Psyllid ID: psy4613

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90------
Protein Sequence
HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRLY
Secondary Structure (PSIPRED)
ccEEEEcccEEEEEccccEEEEEEEEEEcccEEEEEEcccEEEEccccEEEEEEccccEEEEEEEEEccccccccEEEEEEEEccccEEEEEEEEc
Secondary Structure Prediction (SSPRO)
ccEEEEcccEEEccccccEEEEEEEEcccccEEEEEEccccEEEccccEEEEEEEcccEEEEEEEEEEEccHcccccEEEEEEccccccccEEEEc
Coil and Loop (DISEMBL)
hpvihvpnqlvgapidtdvtLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKitkydlgsykciaknslgeveSSIRLY
Flexible Loop (DISEMBL)
hpvihvpnqlvgapidtDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKitkydlgsykciaknslgevessirly
Low Complexity Region (SEG)
HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRLY
Disordered region (IsUnstruct)
***IHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNS***********
Disordered Region (DISOPRED)
HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEV*SSIRLY
Disordered Region (DISEMBL)
HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGE********
Disordered Region (DISPRO)
HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRLY
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRLY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	96	2.2.26 [Sep-21-2011]
Q26474	349	Lachesin OS=Schistocerca	N/A	N/A	0.968	0.266	0.336	2e-08
P97686	1214	Neuronal cell adhesion mo	yes	N/A	0.708	0.056	0.324	2e-07
Q24372	359	Lachesin OS=Drosophila me	no	N/A	0.979	0.261	0.294	2e-07
Q810U4	1256	Neuronal cell adhesion mo	no	N/A	0.708	0.054	0.337	3e-07
Q62718	344	Neurotrimin OS=Rattus nor	no	N/A	0.843	0.235	0.313	5e-07
Q99PJ0	344	Neurotrimin OS=Mus muscul	no	N/A	0.833	0.232	0.305	1e-06
P31836	853	Neural cell adhesion mole	no	N/A	0.906	0.101	0.329	3e-06
Q92823	1304	Neuronal cell adhesion mo	no	N/A	0.708	0.052	0.311	7e-06
Q58DA5	345	Neurotrimin OS=Bos taurus	no	N/A	0.833	0.231	0.294	8e-06
Q9P121	344	Neurotrimin OS=Homo sapie	no	N/A	0.833	0.232	0.282	1e-05

>sp|Q26474|LACH_SCHAM Lachesin OS=Schistocerca americana GN=LAC PE=1 SV=1

 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 2/95 (2%)

Query: 2   PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDF 61
           PVI VP   +G  +  D+ LEC+VEAYP     W++D+   V+S+ ++   S   +  +F
Sbjct: 223 PVITVPRPRLGQALQYDMDLECHVEAYPPPAITWLKDE--TVLSNNQHYSISHFATADEF 280

Query: 62  KMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRLY 96
                +  I K   G Y+C A N LGE    + L+
Sbjct: 281 TDTTRVITIEKRQYGKYQCKAANKLGEAREEVELF 315

May play a role in early neuronal differentiation and axon outgrowth.
Schistocerca americana (taxid: 7009)

>sp|P97686|NRCAM_RAT Neuronal cell adhesion molecule OS=Rattus norvegicus GN=Nrcam PE=1 SV=2

 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 43/77 (55%), Gaps = 9/77 (11%)

Query: 19  VTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSY 78
           ++LEC  E  P  + YW+++ G + ++   Y          +FK  L I  +++ D G+Y
Sbjct: 288 LSLECIAEGLPTPVIYWIKEDGTLPVNRTFYR---------NFKKTLQIIHVSEADSGNY 338

Query: 79  KCIAKNSLGEVESSIRL 95
           +CIAKN+LG V  +I +
Sbjct: 339 QCIAKNALGAVHHTISV 355

Cell adhesion, ankyrin-binding protein involved in neuron-neuron adhesion. May play a role in the molecular assembly of the nodes of Ranvier.

Rattus norvegicus (taxid: 10116)

>sp|Q24372|LACH_DROME Lachesin OS=Drosophila melanogaster GN=Lac PE=2 SV=2

 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 46/95 (48%), Gaps = 1/95 (1%)

Query: 2   PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDF 61
           PVI VP   +G  +  D+ LEC++EAYP     W +D   +  +++ Y +   + +    
Sbjct: 226 PVITVPRPRLGQALQYDMDLECHIEAYPPPAIVWTKDDIQLA-NNQHYSISHFATADEYT 284

Query: 62  KMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRLY 96
              L +  + K   G Y C A N  GE E+ + L+
Sbjct: 285 DSTLRVITVEKRQYGDYVCKATNRFGEAEARVNLF 319

Required for normal tracheal development and maintenance of the trans-epithelial diffusion barrier. Functions as a homophilic cell-adhesion molecule. May play a role in early neuronal differentiation and axon outgrowth.

Drosophila melanogaster (taxid: 7227)

>sp|Q810U4|NRCAM_MOUSE Neuronal cell adhesion molecule OS=Mus musculus GN=Nrcam PE=1 SV=2

 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 9/77 (11%)

Query: 19  VTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSY 78
           ++LEC  E  P  I YW+++ G +  +   Y          +FK  L I  +++ D G+Y
Sbjct: 282 LSLECIAEGLPTPIIYWIKEDGMLPANRTFYR---------NFKKTLQITHVSEADSGNY 332

Query: 79  KCIAKNSLGEVESSIRL 95
           +CIAKN+LG V  +I +
Sbjct: 333 QCIAKNALGAVHHTISV 349

Cell adhesion, ankyrin-binding protein involved in neuron-neuron adhesion. May play a role in the molecular assembly of the nodes of Ranvier.

Mus musculus (taxid: 10090)

>sp|Q62718|NTRI_RAT Neurotrimin OS=Rattus norvegicus GN=Ntm PE=1 SV=1

 Score = 53.1 bits (126), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 5/86 (5%)

Query: 11  VGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKI 70
            G P+    TL+C   A P +   W +D   +V   +  +VE+       F  RLT   +
Sbjct: 231 TGVPVGQKGTLQCEASAVPSAEFQWFKDDKRLVEGKKGVKVEN-----RPFLSRLTFFNV 285

Query: 71  TKYDLGSYKCIAKNSLGEVESSIRLY 96
           +++D G+Y C+A N LG   +SI L+
Sbjct: 286 SEHDYGNYTCVASNKLGHTNASIMLF 311

Neural cell adhesion molecule.

Rattus norvegicus (taxid: 10116)

>sp|Q99PJ0|NTRI_MOUSE Neurotrimin OS=Mus musculus GN=Ntm PE=2 SV=2

 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 5/85 (5%)

Query: 12  GAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKIT 71
           G P+    TL+C   A P +   W +D   +V   +  +VE+       F  +LT   ++
Sbjct: 232 GVPVGQKGTLQCEASAVPSAEFQWFKDDKRLVEGKKGVKVEN-----RPFLSKLTFFNVS 286

Query: 72  KYDLGSYKCIAKNSLGEVESSIRLY 96
           ++D G+Y C+A N LG   +SI L+
Sbjct: 287 EHDYGNYTCVASNKLGHTNASIMLF 311

Neural cell adhesion molecule.

Mus musculus (taxid: 10090)

>sp|P31836|NCAM1_BOVIN Neural cell adhesion molecule 1 OS=Bos taurus GN=NCAM1 PE=1 SV=1

 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 46/97 (47%), Gaps = 10/97 (10%)

Query: 2   PVIHVPNQLVGAP--IDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIF 59
           P +     +V A   +   VTL C  E +P+    W +D        E+ E E   + +F
Sbjct: 212 PTVQARQSIVNATANLGQSVTLVCNAEGFPEPTVSWTKD-------GEQIENEEDEKYLF 264

Query: 60  -DFKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
            D    LTI+K+ K D   Y CIA+N  GE ++SI L
Sbjct: 265 SDDSSELTIRKVDKNDEAEYVCIAENKAGEQDASIHL 301

This protein is a cell adhesion molecule involved in neuron-neuron adhesion, neurite fasciculation, outgrowth of neurites, etc.

Bos taurus (taxid: 9913)

>sp|Q92823|NRCAM_HUMAN Neuronal cell adhesion molecule OS=Homo sapiens GN=NRCAM PE=1 SV=3

 Score = 49.3 bits (116), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 42/77 (54%), Gaps = 9/77 (11%)

Query: 19  VTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSY 78
           ++LEC  E  P  I YW ++ G +  +   Y+         +F+  L I  +++ D G+Y
Sbjct: 288 LSLECIAEGLPTPIIYWAKEDGMLPKNRTVYK---------NFEKTLQIIHVSEADSGNY 338

Query: 79  KCIAKNSLGEVESSIRL 95
           +CIAKN+LG +  +I +
Sbjct: 339 QCIAKNALGAIHHTISV 355

Cell adhesion, ankyrin-binding protein involved in neuron-neuron adhesion. May play a role in the molecular assembly of the nodes of Ranvier.

Homo sapiens (taxid: 9606)

>sp|Q58DA5|NTRI_BOVIN Neurotrimin OS=Bos taurus GN=NTM PE=2 SV=1

 Score = 48.9 bits (115), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 5/85 (5%)

Query: 12  GAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKIT 71
           G P+    TL+C   A P +   W +D   +V   +  +VE+       F  +L    ++
Sbjct: 232 GVPVGQKGTLQCEASAVPSAEFQWYKDDKRLVEGKKGVKVEN-----RPFLSKLIFFNVS 286

Query: 72  KYDLGSYKCIAKNSLGEVESSIRLY 96
           ++D G+Y C+A N LG   +SI L+
Sbjct: 287 EHDYGNYTCVASNKLGHTNASITLF 311

Neural cell adhesion molecule.

Bos taurus (taxid: 9913)

>sp|Q9P121|NTRI_HUMAN Neurotrimin OS=Homo sapiens GN=NTM PE=1 SV=1

 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 5/85 (5%)

Query: 12  GAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKIT 71
           G P+    TL+C   A P +   W +D   ++   +  +VE+       F  +L    ++
Sbjct: 232 GVPVGQKGTLQCEASAVPSAEFQWYKDDKRLIEGKKGVKVEN-----RPFLSKLIFFNVS 286

Query: 72  KYDLGSYKCIAKNSLGEVESSIRLY 96
           ++D G+Y C+A N LG   +SI L+
Sbjct: 287 EHDYGNYTCVASNKLGHTNASIMLF 311

Neural cell adhesion molecule.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	96
270014807	498	hypothetical protein TcasGA2_TC010789 [T	0.864	0.166	0.687	4e-34
91092716	417	PREDICTED: similar to CG32791 CG32791-PA	0.895	0.206	0.687	4e-34
242004450	337	lachesin precursor, putative [Pediculus	0.937	0.267	0.708	5e-34
347965027	416	AGAP001048-PA [Anopheles gambiae str. PE	0.979	0.225	0.656	2e-33
157105177	251	hypothetical protein AaeL_AAEL004233 [Ae	1.0	0.382	0.656	2e-33
328704622	209	PREDICTED: lachesin-like [Acyrthosiphon	1.0	0.459	0.697	9e-33
307211765	241	Lachesin [Harpegnathos saltator]	0.989	0.394	0.663	1e-32
170071738	332	conserved hypothetical protein [Culex qu	1.0	0.289	0.645	4e-32
195400785	556	GJ15333 [Drosophila virilis] gi|19414164	0.979	0.169	0.635	1e-31
195049646	569	GH24041 [Drosophila grimshawi] gi|193893	0.979	0.165	0.635	1e-31

>gi|270014807|gb|EFA11255.1| hypothetical protein TcasGA2_TC010789 [Tribolium castaneum]

 Score =  148 bits (374), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 66/96 (68%), Positives = 82/96 (85%)

Query: 1   HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFD 60
           HPVI VPNQLVGAP+ TDVTLECYVEA PKSINYWVRD G+MVI S +Y+V+ +S+S+F+
Sbjct: 313 HPVIQVPNQLVGAPLGTDVTLECYVEASPKSINYWVRDTGEMVIPSHKYDVQFVSKSLFE 372

Query: 61  FKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRLY 96
            +M + ++ + K D GSY+CIAKNSLGEVES+IRLY
Sbjct: 373 VRMTVIVRNLQKEDAGSYRCIAKNSLGEVESNIRLY 408

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91092716|ref|XP_972399.1| PREDICTED: similar to CG32791 CG32791-PA [Tribolium castaneum]

 Score =  148 bits (374), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 66/96 (68%), Positives = 82/96 (85%)

Query: 1   HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFD 60
           HPVI VPNQLVGAP+ TDVTLECYVEA PKSINYWVRD G+MVI S +Y+V+ +S+S+F+
Sbjct: 232 HPVIQVPNQLVGAPLGTDVTLECYVEASPKSINYWVRDTGEMVIPSHKYDVQFVSKSLFE 291

Query: 61  FKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRLY 96
            +M + ++ + K D GSY+CIAKNSLGEVES+IRLY
Sbjct: 292 VRMTVIVRNLQKEDAGSYRCIAKNSLGEVESNIRLY 327

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242004450|ref|XP_002423099.1| lachesin precursor, putative [Pediculus humanus corporis] gi|212506045|gb|EEB10361.1| lachesin precursor, putative [Pediculus humanus corporis]

 Score =  147 bits (372), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 68/96 (70%), Positives = 83/96 (86%)

Query: 1   HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFD 60
           +PVI VPNQLVGAP+ TDV LECYVEA PKSINYWVRD G+MVISS++YEV+ IS+S+F+
Sbjct: 121 NPVIQVPNQLVGAPLATDVALECYVEASPKSINYWVRDTGEMVISSDKYEVQIISKSLFE 180

Query: 61  FKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRLY 96
            +M L I+   + D+GSY+CIAKNSLGEV+SSIRLY
Sbjct: 181 VRMILLIRNFQRTDVGSYRCIAKNSLGEVDSSIRLY 216

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|347965027|ref|XP_001231126.3| AGAP001048-PA [Anopheles gambiae str. PEST] gi|333469506|gb|EAU76204.3| AGAP001048-PA [Anopheles gambiae str. PEST]

 Score =  146 bits (369), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 63/96 (65%), Positives = 83/96 (86%)

Query: 1   HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFD 60
           HPVI VPNQLVGAP+ TDVT+EC +EA PKSINYWV+D G+M++SS +Y+V+ ++RS+++
Sbjct: 151 HPVIQVPNQLVGAPLGTDVTIECQIEASPKSINYWVKDTGEMLVSSPKYQVQDVTRSLYE 210

Query: 61  FKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRLY 96
            KM LT++   K D+GSY+CIAKNSLGEV+SSIRLY
Sbjct: 211 AKMSLTVRSFQKEDVGSYRCIAKNSLGEVDSSIRLY 246

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157105177|ref|XP_001648752.1| hypothetical protein AaeL_AAEL004233 [Aedes aegypti] gi|108880173|gb|EAT44398.1| AAEL004233-PA [Aedes aegypti]

 Score =  146 bits (369), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 63/96 (65%), Positives = 83/96 (86%)

Query: 1   HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFD 60
           HPVI VPNQLVGAP+ TDV++EC VEA PKSINYWV+D G+M++SS +Y+V+ I +S+++
Sbjct: 11  HPVIQVPNQLVGAPLGTDVSIECLVEASPKSINYWVKDTGEMIVSSPKYQVQDIPKSLYE 70

Query: 61  FKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRLY 96
            KM +T++ I K D+GSY+CIAKNSLGEV+SSIRLY
Sbjct: 71  TKMTMTVRAIQKEDMGSYRCIAKNSLGEVDSSIRLY 106

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328704622|ref|XP_003242550.1| PREDICTED: lachesin-like [Acyrthosiphon pisum]

 Score =  144 bits (362), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 67/96 (69%), Positives = 82/96 (85%)

Query: 1   HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFD 60
           HPVI  P+QLVGAP  T+V LEC VEA+PKSINYWVR+ GDMVI+S++Y+  S ++SIF+
Sbjct: 27  HPVISSPSQLVGAPKGTEVKLECNVEAFPKSINYWVRESGDMVITSDKYQTNSSTKSIFE 86

Query: 61  FKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRLY 96
            +M LTIK + KYDLGSY+CIAKNSLGEVES+IRLY
Sbjct: 87  DQMVLTIKSVEKYDLGSYRCIAKNSLGEVESNIRLY 122

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307211765|gb|EFN87755.1| Lachesin [Harpegnathos saltator]

 Score =  143 bits (361), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 63/95 (66%), Positives = 83/95 (87%)

Query: 2   PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDF 61
           PVIHVPNQLVGAP+ TDV LEC+VEA PKSINYWV D+G M+ISS R++V+++++S F+ 
Sbjct: 46  PVIHVPNQLVGAPLGTDVVLECFVEASPKSINYWVNDKGAMIISSVRHDVQAVAKSQFEV 105

Query: 62  KMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRLY 96
           +M LTI+ + K+D+G+Y+C AKNSLG+VESSIRLY
Sbjct: 106 RMILTIRNLQKHDVGTYRCAAKNSLGDVESSIRLY 140

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170071738|ref|XP_001869995.1| conserved hypothetical protein [Culex quinquefasciatus] gi|167867719|gb|EDS31102.1| conserved hypothetical protein [Culex quinquefasciatus]

 Score =  142 bits (357), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 62/96 (64%), Positives = 80/96 (83%)

Query: 1   HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFD 60
           HPVI VPNQLVGAP+ TDV++EC VEA PKSINYWV+D G+M++SS +Y V+   +S+++
Sbjct: 57  HPVIQVPNQLVGAPLGTDVSIECQVEASPKSINYWVKDTGEMIVSSPKYHVQDTPKSMYE 116

Query: 61  FKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRLY 96
            KM LT++   K D+GSY+CIAKNSLGEV+SSIRLY
Sbjct: 117 TKMSLTVRSFQKEDVGSYRCIAKNSLGEVDSSIRLY 152

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195400785|ref|XP_002058996.1| GJ15333 [Drosophila virilis] gi|194141648|gb|EDW58065.1| GJ15333 [Drosophila virilis]

 Score =  140 bits (352), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 61/96 (63%), Positives = 81/96 (84%)

Query: 1   HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFD 60
           HPVI VPNQLVGAP+ TDV +EC+VEA PKSINYW++D G+M++SS +Y V+  S+S+++
Sbjct: 243 HPVIQVPNQLVGAPLGTDVQIECHVEASPKSINYWIKDTGEMIVSSAKYHVQEGSQSMYE 302

Query: 61  FKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRLY 96
            KM + ++K  K D+GSY+CIAKNSLGEV+SSIRLY
Sbjct: 303 TKMSMIVRKFQKEDVGSYRCIAKNSLGEVDSSIRLY 338

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195049646|ref|XP_001992759.1| GH24041 [Drosophila grimshawi] gi|193893600|gb|EDV92466.1| GH24041 [Drosophila grimshawi]

 Score =  140 bits (352), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 61/96 (63%), Positives = 81/96 (84%)

Query: 1   HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFD 60
           HPVI VPNQLVGAP+ TDV +EC+VEA PKSINYW++D G+M++SS +Y V+  S+S+++
Sbjct: 243 HPVIQVPNQLVGAPLGTDVQIECHVEASPKSINYWIKDTGEMIVSSGKYHVQESSQSMYE 302

Query: 61  FKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRLY 96
            KM + ++K  K D+GSY+CIAKNSLGEV+SSIRLY
Sbjct: 303 TKMSMIVRKFQKDDVGSYRCIAKNSLGEVDSSIRLY 338

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	96
FB|FBgn0259245	555	CG42343 [Drosophila melanogast	1.0	0.172	0.531	1.1e-24
FB|FBgn0259714	467	CG42368 [Drosophila melanogast	0.989	0.203	0.437	3.2e-20
FB|FBgn0031837	376	CG11320 [Drosophila melanogast	0.958	0.244	0.336	5e-11
FB|FBgn0010238	359	Lac "Lachesin" [Drosophila mel	0.979	0.261	0.294	1.5e-08
UNIPROTKB|F1SAE8	428	NRCAM "Uncharacterized protein	0.687	0.154	0.36	2e-07
RGD|620958	344	Ntm "neurotrimin" [Rattus norv	0.833	0.232	0.329	2.8e-07
MGI|MGI:2446259	344	Ntm "neurotrimin" [Mus musculu	0.833	0.232	0.317	6e-07
UNIPROTKB|E1BLM2	1308	E1BLM2 "Uncharacterized protei	0.687	0.050	0.36	6.8e-07
UNIPROTKB|H7BYX6	664	NCAM1 "Neural cell adhesion mo	0.916	0.132	0.350	1e-06
UNIPROTKB|E9PLH7	733	NCAM1 "Neural cell adhesion mo	0.916	0.120	0.350	1.2e-06

FB|FBgn0259245 CG42343 [Drosophila melanogaster (taxid:7227)]

 Score = 288 (106.4 bits), Expect = 1.1e-24, P = 1.1e-24
 Identities = 51/96 (53%), Positives = 71/96 (73%)

Query:     1 HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFD 60
             HP++ VPNQLVGAP+ TDVTL C VEA PK+INYW R+ G+M+I+ +RY +     +++ 
Sbjct:   310 HPLVQVPNQLVGAPVLTDVTLICNVEASPKAINYWQRENGEMIIAGDRYALTEKENNMYA 369

Query:    61 FKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRLY 96
              +M L IK++   D G YKCI+KNS+G+ E +IRLY
Sbjct:   370 IEMILHIKRLQSSDFGGYKCISKNSIGDTEGTIRLY 405

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

FB|FBgn0259714 CG42368 [Drosophila melanogaster (taxid:7227)]

 Score = 245 (91.3 bits), Expect = 3.2e-20, P = 3.2e-20
 Identities = 42/96 (43%), Positives = 65/96 (67%)

Query:     2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESI-SRSIFD 60
             P++ +P+QLVG PI  ++TLEC++EA P S+NYW R+   M+  S +Y+ E+I     + 
Sbjct:   253 PMVWIPHQLVGIPIGFNITLECFIEANPTSLNYWTRENDQMITESSKYKTETIPGHPSYK 312

Query:    61 FKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRLY 96
               MRLTI  +   D G+YKC+AKN  G+++ +I+LY
Sbjct:   313 ATMRLTITNVQSSDYGNYKCVAKNPRGDMDGNIKLY 348

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

FB|FBgn0031837 CG11320 [Drosophila melanogaster (taxid:7227)]

 Score = 159 (61.0 bits), Expect = 5.0e-11, P = 5.0e-11
 Identities = 32/95 (33%), Positives = 52/95 (54%)

Query:     2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDF 61
             P I      +   +   +TLEC  E+ P S+N+W+RD    ++    YE  S+   +F  
Sbjct:   231 PTIWTRYDTIYVGLGQKLTLECITESQPASVNFWLRDS--QLLQGGSYESVSVDH-VFRI 287

Query:    62 KMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRLY 96
              MR+T++ ITK D G Y C AKN++G+ +  I ++
Sbjct:   288 VMRITLRPITKRDFGEYICRAKNAMGQTDRIITVH 322

GO:0007155 "cell adhesion" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISS

FB|FBgn0010238 Lac "Lachesin" [Drosophila melanogaster (taxid:7227)]

 Score = 136 (52.9 bits), Expect = 1.5e-08, P = 1.5e-08
 Identities = 28/95 (29%), Positives = 46/95 (48%)

Query:     2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDF 61
             PVI VP   +G  +  D+ LEC++EAYP     W +D   +  +++ Y +   + +    
Sbjct:   226 PVITVPRPRLGQALQYDMDLECHIEAYPPPAIVWTKDDIQLA-NNQHYSISHFATADEYT 284

Query:    62 KMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRLY 96
                L +  + K   G Y C A N  GE E+ + L+
Sbjct:   285 DSTLRVITVEKRQYGDYVCKATNRFGEAEARVNLF 319

GO:0007409 "axonogenesis" evidence=ISS

GO:0019898 "extrinsic to membrane" evidence=NAS

GO:0007424 "open tracheal system development" evidence=IEP;IMP

GO:0035151 "regulation of tube size, open tracheal system" evidence=IMP

GO:0035160 "maintenance of epithelial integrity, open tracheal system" evidence=IMP

GO:0007156 "homophilic cell adhesion" evidence=IDA

GO:0005918 "septate junction" evidence=IDA

GO:0016331 "morphogenesis of embryonic epithelium" evidence=IMP

GO:0019991 "septate junction assembly" evidence=IMP

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

UNIPROTKB|F1SAE8 NRCAM "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 127 (49.8 bits), Expect = 2.0e-07, P = 2.0e-07
 Identities = 27/75 (36%), Positives = 43/75 (57%)

Query:    19 VTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSY 78
             ++LEC  E  P  I YW+++ G + I+   Y          +FK  L I ++T+ D G+Y
Sbjct:   265 LSLECIAEGLPTPIIYWIKEDGTLPINRTFYR---------NFKKTLQIIQVTEADSGNY 315

Query:    79 KCIAKNSLGEVESSI 93
             +CIAKN+LG +  +I
Sbjct:   316 QCIAKNTLGAIHHTI 330

GO:0045202 "synapse" evidence=IEA

GO:0045162 "clustering of voltage-gated sodium channels" evidence=IEA

GO:0031290 "retinal ganglion cell axon guidance" evidence=IEA

GO:0030506 "ankyrin binding" evidence=IEA

GO:0030424 "axon" evidence=IEA

GO:0019227 "neuronal action potential propagation" evidence=IEA

GO:0016337 "cell-cell adhesion" evidence=IEA

GO:0010975 "regulation of neuron projection development" evidence=IEA

GO:0008104 "protein localization" evidence=IEA

GO:0007417 "central nervous system development" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0001525 "angiogenesis" evidence=IEA

RGD|620958 Ntm "neurotrimin" [Rattus norvegicus (taxid:10116)]

 Score = 124 (48.7 bits), Expect = 2.8e-07, P = 2.8e-07
 Identities = 28/85 (32%), Positives = 44/85 (51%)

Query:    12 GAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKIT 71
             G P+    TL+C   A P +   W +D   +V   +  +VE+  R    F  RLT   ++
Sbjct:   232 GVPVGQKGTLQCEASAVPSAEFQWFKDDKRLVEGKKGVKVEN--RP---FLSRLTFFNVS 286

Query:    72 KYDLGSYKCIAKNSLGEVESSIRLY 96
             ++D G+Y C+A N LG   +SI L+
Sbjct:   287 EHDYGNYTCVASNKLGHTNASIMLF 311

GO:0005615 "extracellular space" evidence=IDA

GO:0005886 "plasma membrane" evidence=IEA

GO:0007155 "cell adhesion" evidence=IEA

GO:0009986 "cell surface" evidence=IDA

GO:0010977 "negative regulation of neuron projection development" evidence=IDA

GO:0021549 "cerebellum development" evidence=IEP

GO:0030424 "axon" evidence=IDA

GO:0031225 "anchored to membrane" evidence=IEA

GO:0032355 "response to estradiol stimulus" evidence=IEP

GO:0048471 "perinuclear region of cytoplasm" evidence=IDA

GO:0060076 "excitatory synapse" evidence=IDA

GO:0070492 "oligosaccharide binding" evidence=IDA

MGI|MGI:2446259 Ntm "neurotrimin" [Mus musculus (taxid:10090)]

 Score = 121 (47.7 bits), Expect = 6.0e-07, P = 6.0e-07
 Identities = 27/85 (31%), Positives = 44/85 (51%)

Query:    12 GAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKIT 71
             G P+    TL+C   A P +   W +D   +V   +  +VE+  R    F  +LT   ++
Sbjct:   232 GVPVGQKGTLQCEASAVPSAEFQWFKDDKRLVEGKKGVKVEN--RP---FLSKLTFFNVS 286

Query:    72 KYDLGSYKCIAKNSLGEVESSIRLY 96
             ++D G+Y C+A N LG   +SI L+
Sbjct:   287 EHDYGNYTCVASNKLGHTNASIMLF 311

GO:0005615 "extracellular space" evidence=ISO

GO:0005886 "plasma membrane" evidence=IEA

GO:0007155 "cell adhesion" evidence=IEA

GO:0009986 "cell surface" evidence=ISO

GO:0010977 "negative regulation of neuron projection development" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0030424 "axon" evidence=ISO

GO:0031225 "anchored to membrane" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=ISO

GO:0060076 "excitatory synapse" evidence=ISO

GO:0070492 "oligosaccharide binding" evidence=ISO

UNIPROTKB|E1BLM2 E1BLM2 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 128 (50.1 bits), Expect = 6.8e-07, P = 6.8e-07
 Identities = 27/75 (36%), Positives = 43/75 (57%)

Query:    19 VTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSY 78
             ++LEC  E  P  I YW+++ G + I+   Y          +FK  L I ++T+ D G+Y
Sbjct:   288 LSLECIAEGLPTPIIYWIKEDGTLPINRTFYR---------NFKKTLQIVQVTEADSGNY 338

Query:    79 KCIAKNSLGEVESSI 93
             +CIAKN+LG +  +I
Sbjct:   339 QCIAKNALGAIHHTI 353

GO:0045202 "synapse" evidence=IEA

GO:0045162 "clustering of voltage-gated sodium channels" evidence=IEA

GO:0031290 "retinal ganglion cell axon guidance" evidence=IEA

GO:0030506 "ankyrin binding" evidence=IEA

GO:0030424 "axon" evidence=IEA

GO:0019227 "neuronal action potential propagation" evidence=IEA

GO:0016337 "cell-cell adhesion" evidence=IEA

GO:0010975 "regulation of neuron projection development" evidence=IEA

GO:0008104 "protein localization" evidence=IEA

GO:0007417 "central nervous system development" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0001525 "angiogenesis" evidence=IEA

UNIPROTKB|H7BYX6 NCAM1 "Neural cell adhesion molecule 1" [Homo sapiens (taxid:9606)]

 Score = 123 (48.4 bits), Expect = 1.0e-06, P = 1.0e-06
 Identities = 34/97 (35%), Positives = 48/97 (49%)

Query:     2 PVIHVPNQLVGAP--IDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIF 59
             P I     +V A   +   VTL C  E +P+    W +D G+ +   E  E     + IF
Sbjct:   211 PTIQARQNIVNATANLGQSVTLVCDAEGFPEPTMSWTKD-GEQIEQEEDDE-----KYIF 264

Query:    60 -DFKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
              D   +LTIKK+ K D   Y CIA+N  GE +++I L
Sbjct:   265 SDDSSQLTIKKVDKNDEAEYICIAENKAGEQDATIHL 301

GO:0007155 "cell adhesion" evidence=IEA

GO:0016020 "membrane" evidence=IEA

UNIPROTKB|E9PLH7 NCAM1 "Neural cell adhesion molecule 1" [Homo sapiens (taxid:9606)]

 Score = 123 (48.4 bits), Expect = 1.2e-06, P = 1.2e-06
 Identities = 34/97 (35%), Positives = 48/97 (49%)

Query:     2 PVIHVPNQLVGAP--IDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIF 59
             P I     +V A   +   VTL C  E +P+    W +D G+ +   E  E     + IF
Sbjct:    94 PTIQARQNIVNATANLGQSVTLVCDAEGFPEPTMSWTKD-GEQIEQEEDDE-----KYIF 147

Query:    60 -DFKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
              D   +LTIKK+ K D   Y CIA+N  GE +++I L
Sbjct:   148 SDDSSQLTIKKVDKNDEAEYICIAENKAGEQDATIHL 184

GO:0007155 "cell adhesion" evidence=IEA

GO:0016020 "membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	96
smart00410	85	smart00410, IG_like, Immunoglobulin like	2e-13
smart00409	85	smart00409, IG, Immunoglobulin	2e-13
pfam07679	90	pfam07679, I-set, Immunoglobulin I-set domain	2e-12
cd05730	95	cd05730, Ig3_NCAM-1_like, Third immunoglobulin (Ig	5e-10
cd00096	74	cd00096, Ig, Immunoglobulin domain	5e-09
cd05731	71	cd05731, Ig3_L1-CAM_like, Third immunoglobulin (Ig	1e-07
cd05723	71	cd05723, Ig4_Neogenin, Fourth immunoglobulin (Ig)-	2e-07
cd05760	77	cd05760, Ig2_PTK7, Second immunoglobulin (Ig)-like	2e-07
cd05725	69	cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like	5e-07
smart00408	63	smart00408, IGc2, Immunoglobulin C-2 Type	9e-07
cd04969	73	cd04969, Ig5_Contactin_like, Fifth Ig domain of co	1e-05
cd05876	71	cd05876, Ig3_L1-CAM, Third immunoglobulin (Ig)-lik	2e-05
cd05724	86	cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like	1e-04
pfam13927	74	pfam13927, Ig_3, Immunoglobulin domain	2e-04
cd05849	93	cd05849, Ig1_Contactin-1, First Ig domain of conta	2e-04
cd07693	100	cd07693, Ig1_Robo, First immunoglobulin (Ig)-like	5e-04
cd05744	75	cd05744, Ig_Myotilin_C_like, Immunoglobulin (Ig)-l	8e-04
cd05728	85	cd05728, Ig4_Contactin-2-like, Fourth Ig domain of	0.001
cd05852	73	cd05852, Ig5_Contactin-1, Fifth Ig domain of conta	0.001
cd05764	74	cd05764, Ig_2, Subgroup of the immunoglobulin (Ig)	0.001
cd05893	75	cd05893, Ig_Palladin_C, C-terminal immunoglobulin	0.002
cd05747	92	cd05747, Ig5_Titin_like, M5, fifth immunoglobulin	0.002
cd05746	69	cd05746, Ig4_Peroxidasin, Fourth immunoglobulin (I	0.003
cd04968	88	cd04968, Ig3_Contactin_like, Third Ig domain of co	0.003

>gnl|CDD|214653 smart00410, IG_like, Immunoglobulin like

 Score = 59.4 bits (144), Expect = 2e-13
 Identities = 27/79 (34%), Positives = 34/79 (43%), Gaps = 5/79 (6%)

Query: 18 DVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGS 77
           VTL C     P     W +  G ++  S R+   S+SRS       LTI  +T  D G+
Sbjct: 11 SVTLSCEASGSPPPEVTWYKQGGKLLAESGRF---SVSRSGSTS--TLTISNVTPEDSGT 65

Query: 78 YKCIAKNSLGEVESSIRLY 96
          Y C A NS G   S   L 
Sbjct: 66 YTCAATNSSGSASSGTTLT 84

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. Length = 85

>gnl|CDD|214652 smart00409, IG, Immunoglobulin

 Score = 59.4 bits (144), Expect = 2e-13
 Identities = 27/79 (34%), Positives = 34/79 (43%), Gaps = 5/79 (6%)

Query: 18 DVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGS 77
           VTL C     P     W +  G ++  S R+   S+SRS       LTI  +T  D G+
Sbjct: 11 SVTLSCEASGSPPPEVTWYKQGGKLLAESGRF---SVSRSGSTS--TLTISNVTPEDSGT 65

Query: 78 YKCIAKNSLGEVESSIRLY 96
          Y C A NS G   S   L 
Sbjct: 66 YTCAATNSSGSASSGTTLT 84

Length = 85

>gnl|CDD|191810 pfam07679, I-set, Immunoglobulin I-set domain

 Score = 57.3 bits (139), Expect = 2e-12
 Identities = 27/94 (28%), Positives = 37/94 (39%), Gaps = 6/94 (6%)

Query: 2  PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDF 61
          P      + V           C V   P     W +D G  + SS+R++V     +    
Sbjct: 1  PKFTQKPKDVEVQEGESARFTCTVTGDPDPTVSWFKD-GQPLRSSDRFKV-----TYEGG 54

Query: 62 KMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
             LTI  +   D G Y C+A NS GE E+S  L
Sbjct: 55 TYTLTISNVQPDDEGKYTCVATNSAGEAEASAEL 88

Length = 90

>gnl|CDD|143207 cd05730, Ig3_NCAM-1_like, Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

 Score = 51.1 bits (122), Expect = 5e-10
 Identities = 28/96 (29%), Positives = 40/96 (41%), Gaps = 9/96 (9%)

Query: 2  PVIHVPNQLVGAPIDTD--VTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIF 59
          P I      V A  +    VTL C  + +P+    W +D   +    E+Y       S  
Sbjct: 2  PTIRARQSEVNATANLGQSVTLACDADGFPEPTMTWTKDGEPIESGEEKY-------SFN 54

Query: 60 DFKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
          +    +TI  + K D   Y CIA+N  GE E+ I L
Sbjct: 55 EDGSEMTILDVDKLDEAEYTCIAENKAGEQEAEIHL 90

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans interactions), through binding to the Ig1 and Ig2 domains. The adhesive ability of NCAM is modulated by the addition of polysialic acid chains to the fifth Ig-like domain. Length = 95

>gnl|CDD|143165 cd00096, Ig, Immunoglobulin domain

 Score = 48.3 bits (114), Expect = 5e-09
 Identities = 23/76 (30%), Positives = 32/76 (42%), Gaps = 2/76 (2%)

Query: 19 VTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSY 78
          VTL C     P     W+++     + S        SR        LTI  +T  D G+Y
Sbjct: 1  VTLTCLASGPPPPTITWLKN--GKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTY 58

Query: 79 KCIAKNSLGEVESSIR 94
           C+A NS G V +S+ 
Sbjct: 59 TCVASNSAGTVSASVT 74

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74

>gnl|CDD|143208 cd05731, Ig3_L1-CAM_like, Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

 Score = 44.3 bits (105), Expect = 1e-07
 Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 9/69 (13%)

Query: 19 VTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSY 78
          + LEC  E  P     W++  G++   ++R + E       +F   L I  +++ D G Y
Sbjct: 1  LLLECIAEGLPTPEISWIKIGGEL--PADRTKFE-------NFNKTLKIDNVSEEDDGEY 51

Query: 79 KCIAKNSLG 87
          +C A NSLG
Sbjct: 52 RCTASNSLG 60

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin. Length = 71

>gnl|CDD|212460 cd05723, Ig4_Neogenin, Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins

 Score = 44.2 bits (104), Expect = 2e-07
 Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 9/78 (11%)

Query: 18 DVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGS 77
          D+  EC V   P     WV++ GDMVI S+ +++          +  L +  + K D G 
Sbjct: 1  DIVFECEVTGKPTPTVKWVKN-GDMVIPSDYFKIVK--------EHNLQVLGLVKSDEGF 51

Query: 78 YKCIAKNSLGEVESSIRL 95
          Y+CIA+N +G V++  +L
Sbjct: 52 YQCIAENDVGNVQAGAQL 69

Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain. Length = 71

>gnl|CDD|143237 cd05760, Ig2_PTK7, Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4

 Score = 44.1 bits (104), Expect = 2e-07
 Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 7/74 (9%)

Query: 19 VTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSY 78
          VTL C+++ +P+    W RD   +      Y V S  R+       LT++     D G Y
Sbjct: 1  VTLRCHIDGHPRPTYQWFRDGTPLSDGQGNYSVSSKERT-------LTLRSAGPDDSGLY 53

Query: 79 KCIAKNSLGEVESS 92
           C A N+ G V SS
Sbjct: 54 YCCAHNAFGSVCSS 67

Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in several cancers, including melanoma and colon cancer lines. Length = 77

>gnl|CDD|143202 cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

 Score = 42.8 bits (101), Expect = 5e-07
 Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 10/77 (12%)

Query: 19 VTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSY 78
          V  +C V   P     W ++ G++     R E       I D K  L I+ +T  D GSY
Sbjct: 1  VEFQCEVGGDPVPTVLWRKEDGELPKG--RAE-------ILDDK-SLKIRNVTAGDEGSY 50

Query: 79 KCIAKNSLGEVESSIRL 95
           C A+N +G++E+S  L
Sbjct: 51 TCEAENMVGKIEASASL 67

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 69

>gnl|CDD|197706 smart00408, IGc2, Immunoglobulin C-2 Type

 Score = 42.0 bits (99), Expect = 9e-07
 Identities = 24/74 (32%), Positives = 32/74 (43%), Gaps = 12/74 (16%)

Query: 15 IDTDVTLECYVEAYPK-SINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKY 73
              VTL C  E  P  +I  W++D     +      V S S         LTIK ++  
Sbjct: 1  EGQSVTLTCPAEGNPVPNIT-WLKD--GKPLPESNRFVASGST--------LTIKSVSLE 49

Query: 74 DLGSYKCIAKNSLG 87
          D G Y C+A+NS G
Sbjct: 50 DSGLYTCVAENSAG 63

Length = 63

>gnl|CDD|143170 cd04969, Ig5_Contactin_like, Fifth Ig domain of contactin

 Score = 39.3 bits (92), Expect = 1e-05
 Identities = 23/75 (30%), Positives = 31/75 (41%), Gaps = 9/75 (12%)

Query: 18 DVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGS 77
          DV +EC  +A PK    W +    +  SS        S         L I  +TK D G 
Sbjct: 3  DVIIECKPKAAPKPTISWSKGTELLTNSSRICIWPDGS---------LEILNVTKSDEGK 53

Query: 78 YKCIAKNSLGEVESS 92
          Y C A+N  G+  S+
Sbjct: 54 YTCFAENFFGKANST 68

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal act ivity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 73

>gnl|CDD|143284 cd05876, Ig3_L1-CAM, Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

 Score = 38.8 bits (90), Expect = 2e-05
 Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 9/71 (12%)

Query: 19 VTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSY 78
          + LEC  E  P    +W R  G +  S  R +  + +++       L +  + + D G Y
Sbjct: 1  LVLECIAEGLPTPEVHWDRIDGPL--SPNRTKKLNNNKT-------LQLDNVLESDDGEY 51

Query: 79 KCIAKNSLGEV 89
           C A+NS G  
Sbjct: 52 VCTAENSEGSA 62

Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM. Length = 71

>gnl|CDD|143201 cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

 Score = 37.0 bits (86), Expect = 1e-04
 Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 9/75 (12%)

Query: 19 VTLECYV-EAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGS 77
            LEC     +P+    W +D   + + +ER       R + D    L I +  K D G+
Sbjct: 14 AVLECSPPRGHPEPTVSWRKDGQPLNLDNERV------RIVDDGN--LLIAEARKSDEGT 65

Query: 78 YKCIAKNSLGEVESS 92
          YKC+A N +GE ES+
Sbjct: 66 YKCVATNMVGERESA 80

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 86

>gnl|CDD|222457 pfam13927, Ig_3, Immunoglobulin domain

 Score = 36.2 bits (83), Expect = 2e-04
 Identities = 23/84 (27%), Positives = 28/84 (33%), Gaps = 12/84 (14%)

Query: 2  PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINY-WVRDQGDMVISSERYEVESISRSIFD 60
          PVI V            VTL C  E  P      W R+      S       S       
Sbjct: 2  PVITVSPSPSVT-SGGGVTLTCSAEGGPPPPTISWYRNGSISGGSGGLGSSGST------ 54

Query: 61 FKMRLTIKKITKYDLGSYKCIAKN 84
              LT+  +T  D G+Y C+A N
Sbjct: 55 ----LTLSSVTSEDSGTYTCVASN 74

This family contains immunoglobulin-like domains. Length = 74

>gnl|CDD|143257 cd05849, Ig1_Contactin-1, First Ig domain of contactin-1

 Score = 36.5 bits (84), Expect = 2e-04
 Identities = 26/89 (29%), Positives = 37/89 (41%), Gaps = 19/89 (21%)

Query: 14 PIDT---------DVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMR 64
          PIDT          V++ C   A P  I  W ++  D+ ++++RY +             
Sbjct: 8  PIDTIYPEESTEGKVSVNCRARANPFPIYKWRKNNLDIDLTNDRYSM---------VGGN 58

Query: 65 LTIKKITKY-DLGSYKCIAKNSLGEVESS 92
          L I    KY D G Y CI  N  G+V S 
Sbjct: 59 LVINNPDKYKDAGRYVCIVSNIYGKVRSR 87

Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 93

>gnl|CDD|143317 cd07693, Ig1_Robo, First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

 Score = 35.6 bits (82), Expect = 5e-04
 Identities = 24/93 (25%), Positives = 38/93 (40%), Gaps = 6/93 (6%)

Query: 3  VIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESI---SRSIF 59
          ++  P+ L+        TL C  E  P     W+++   +    +      I   S S+F
Sbjct: 4  IVEHPSDLI-VSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGSLF 62

Query: 60 DFKMRLTIKKITKYDLGSYKCIAKNSLGEVESS 92
              R+   +  + D G Y C+A NSLGE  S 
Sbjct: 63 FL--RVVHGRKGRSDEGVYVCVAHNSLGEAVSR 93

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 100

>gnl|CDD|143221 cd05744, Ig_Myotilin_C_like, Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin

 Score = 34.8 bits (80), Expect = 8e-04
 Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 6/78 (7%)

Query: 19 VTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDF-KMRLTIKKITKYDLGS 77
          V LEC V A P    +W ++  +M+     Y  + IS    +  ++ L I+   K D G 
Sbjct: 1  VRLECRVSAIPPPQIFWKKNN-EML----TYNTDRISLYQDNCGRICLLIQNANKEDAGW 55

Query: 78 YKCIAKNSLGEVESSIRL 95
          Y   A N  G V  + RL
Sbjct: 56 YTVSAVNEAGVVSCNARL 73

Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP). Length = 75

>gnl|CDD|143205 cd05728, Ig4_Contactin-2-like, Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

 Score = 34.9 bits (80), Expect = 0.001
 Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 10/83 (12%)

Query: 13 APIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITK 72
          A I + +  EC     P+    W+++ G  + S  R EVE+           L I K++ 
Sbjct: 11 ADIGSSLRWECKASGNPRPAYRWLKN-GQPLASENRIEVEA---------GDLRITKLSL 60

Query: 73 YDLGSYKCIAKNSLGEVESSIRL 95
           D G Y+C+A+N  G + +S  L
Sbjct: 61 SDSGMYQCVAENKHGTIYASAEL 83

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes. Length = 85

>gnl|CDD|143260 cd05852, Ig5_Contactin-1, Fifth Ig domain of contactin-1

 Score = 34.6 bits (79), Expect = 0.001
 Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 9/74 (12%)

Query: 19 VTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSY 78
          V +EC  +A PK    W +   ++++++ R        SI+D    L I  ITK D GSY
Sbjct: 4  VIIECKPKAAPKPKFSWSKGT-ELLVNNSRI-------SIWD-DGSLEILNITKLDEGSY 54

Query: 79 KCIAKNSLGEVESS 92
           C A+N+ G+  S+
Sbjct: 55 TCFAENNRGKANST 68

Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 73

>gnl|CDD|143241 cd05764, Ig_2, Subgroup of the immunoglobulin (Ig) superfamily

 Score = 34.4 bits (79), Expect = 0.001
 Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 8/77 (10%)

Query: 19 VTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSY 78
           TL C     P+   +W+   G ++ +S        SR++      L I   T  D GS+
Sbjct: 4  ATLRCKARGDPEPAIHWISPDGKLISNS--------SRTLVYDNGTLDILITTVKDTGSF 55

Query: 79 KCIAKNSLGEVESSIRL 95
           CIA N+ GE  +++ L
Sbjct: 56 TCIASNAAGEATATVEL 72

Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74

>gnl|CDD|143301 cd05893, Ig_Palladin_C, C-terminal immunoglobulin (Ig)-like domain of palladin

 Score = 33.5 bits (76), Expect = 0.002
 Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 4/77 (5%)

Query: 19 VTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSY 78
          V LEC V   P    +W ++   +  +++R  +   +       + L I+  TK D G Y
Sbjct: 1  VRLECRVSGVPHPQIFWKKENESLTHNTDRVSMHQDNCGY----ICLLIQGATKEDAGWY 56

Query: 79 KCIAKNSLGEVESSIRL 95
             AKN  G V  + RL
Sbjct: 57 TVSAKNEAGIVSCTARL 73

Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions. Length = 75

>gnl|CDD|143224 cd05747, Ig5_Titin_like, M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

 Score = 33.9 bits (77), Expect = 0.002
 Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 6/77 (7%)

Query: 19 VTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSY 78
              C V+  P     W+R +G +++SS+R+++ S      ++K    I K+   D G+Y
Sbjct: 21 ARFSCDVDGEPAPTVTWMR-EGQIIVSSQRHQITST-----EYKSTFEISKVQMSDEGNY 74

Query: 79 KCIAKNSLGEVESSIRL 95
            + +NS G+ E+   L
Sbjct: 75 TVVVENSEGKQEAQFTL 91

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Length = 92

>gnl|CDD|143223 cd05746, Ig4_Peroxidasin, Fourth immunoglobulin (Ig)-like domain of peroxidasin

 Score = 33.3 bits (76), Expect = 0.003
 Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 9/77 (11%)

Query: 19 VTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSY 78
          V + C  +  P+    W +D G  V  S ++    IS   +     L I+ +   D G Y
Sbjct: 1  VQIPCSAQGDPEPTITWNKD-GVQVTESGKF---HISPEGY-----LAIRDVGVADQGRY 51

Query: 79 KCIAKNSLGEVESSIRL 95
          +C+A+N++G    S+ L
Sbjct: 52 ECVARNTIGYASVSMVL 68

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self. Length = 69

>gnl|CDD|143169 cd04968, Ig3_Contactin_like, Third Ig domain of contactin

 Score = 33.6 bits (77), Expect = 0.003
 Identities = 24/84 (28%), Positives = 35/84 (41%), Gaps = 10/84 (11%)

Query: 13 APIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITK 72
          A    +VTLEC+    P     W +  G M  S+E     ++          L I  I  
Sbjct: 13 ALKGQNVTLECFALGNPVPQIKWRKVDGSMPSSAEISMSGAV----------LKIPNIQF 62

Query: 73 YDLGSYKCIAKNSLGEVESSIRLY 96
           D G+Y+C A+N  G+     R+Y
Sbjct: 63 EDEGTYECEAENIKGKDTHQGRIY 86

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal act ivity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 88

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	96
cd05747	92	Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like	99.82
cd05851	88	Ig3_Contactin-1 Third Ig domain of contactin-1. Ig	99.81
cd05762	98	Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of	99.81
cd05894	86	Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of card	99.79
PF07679	90	I-set: Immunoglobulin I-set domain; InterPro: IPR0	99.77
cd05869	97	Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain o	99.77
cd05730	95	Ig3_NCAM-1_like Third immunoglobulin (Ig)-like dom	99.76
cd04968	88	Ig3_Contactin_like Third Ig domain of contactin. I	99.76
cd05737	92	Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-	99.75
cd05892	75	Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like	99.74
cd04972	90	Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) o	99.74
cd05867	76	Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like do	99.74
cd05870	98	Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain o	99.73
cd05745	74	Ig3_Peroxidasin Third immunoglobulin (Ig)-like dom	99.73
cd05852	73	Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig	99.73
cd04975	101	Ig4_SCFR_like Fourth immunoglobulin (Ig)-like doma	99.73
cd05866	92	Ig1_NCAM-2 First immunoglobulin (Ig)-like domain o	99.73
cd05728	85	Ig4_Contactin-2-like Fourth Ig domain of the neura	99.73
cd05865	96	Ig1_NCAM-1 First immunoglobulin (Ig)-like domain o	99.72
cd05735	88	Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down	99.72
cd05732	96	Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like dom	99.71
cd05859	101	Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like do	99.71
cd05893	75	Ig_Palladin_C C-terminal immunoglobulin (Ig)-like	99.71
cd05773	109	Ig8_hNephrin_like Eighth immunoglobulin-like domai	99.71
cd05744	75	Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain	99.71
cd05868	76	Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain o	99.7
cd05758	98	Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like do	99.7
cd05857	85	Ig2_FGFR Second immunoglobulin (Ig)-like domain of	99.7
cd05891	92	Ig_M-protein_C C-terminal immunoglobulin (Ig)-like	99.69
cd05748	74	Ig_Titin_like Immunoglobulin (Ig)-like domain of t	99.69
cd05723	71	Ig4_Neogenin Fourth immunoglobulin (Ig)-like domai	99.69
cd05740	91	Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domai	99.68
cd04978	76	Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like	99.68
cd05856	82	Ig2_FGFRL1-like Second immunoglobulin (Ig)-like do	99.68
cd04969	73	Ig5_Contactin_like Fifth Ig domain of contactin. I	99.68
cd05743	78	Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domai	99.66
cd05746	69	Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like do	99.66
cd05849	93	Ig1_Contactin-1 First Ig domain of contactin-1. Ig	99.66
cd05855	79	Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of T	99.66
cd07693	100	Ig1_Robo First immunoglobulin (Ig)-like domain in	99.66
cd05863	67	Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain	99.66
cd05760	77	Ig2_PTK7 Second immunoglobulin (Ig)-like domain of	99.65
cd05764	74	Ig_2 Subgroup of the immunoglobulin (Ig) superfami	99.65
cd05876	71	Ig3_L1-CAM Third immunoglobulin (Ig)-like domain o	99.64
cd05848	94	Ig1_Contactin-5 First Ig domain of contactin-5. Ig	99.64
cd05739	69	Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-li	99.63
cd05726	90	Ig4_Robo Fhird immunoglobulin (Ig)-like domain in	99.63
cd04977	92	Ig1_NCAM-1_like First immunoglobulin (Ig)-like dom	99.63
cd05850	94	Ig1_Contactin-2 First Ig domain of contactin-2. Ig	99.63
cd05763	75	Ig_1 Subgroup of the immunoglobulin (Ig) superfami	99.63
cd04971	81	Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of	99.62
cd04973	79	Ig1_FGFR First immunoglobulin (Ig)-like domain of	99.62
cd05725	69	Ig3_Robo Third immunoglobulin (Ig)-like domain in	99.62
cd05724	86	Ig2_Robo Second immunoglobulin (Ig)-like domain in	99.62
cd05898	98	Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain	99.62
cd05731	71	Ig3_L1-CAM_like Third immunoglobulin (Ig)-like dom	99.61
cd04976	71	Ig2_VEGFR Second immunoglobulin (Ig)-like domain o	99.61
cd05754	85	Ig3_Perlecan_like Third immunoglobulin (Ig)-like d	99.61
cd05756	94	Ig1_IL1R_like First immunoglobulin (Ig)-like domai	99.59
cd05864	70	Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain	99.58
cd05854	85	Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig	99.58
cd04974	90	Ig3_FGFR Third immunoglobulin (Ig)-like domain of	99.58
cd05858	90	Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain o	99.58
cd05765	81	Ig_3 Subgroup of the immunoglobulin (Ig) superfami	99.56
cd05738	74	Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-l	99.56
cd05729	85	Ig2_FGFR_like Second immunoglobulin (Ig)-like doma	99.56
cd04970	85	Ig6_Contactin_like Sixth Ig domain of contactin. I	99.55
cd05742	84	Ig1_VEGFR_like First immunoglobulin (Ig)-like doma	99.55
cd05750	75	Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain	99.54
cd07702	72	Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain	99.53
cd05749	81	Ig2_Tyro3_like Second immunoglobulin (Ig)-like dom	99.53
cd05736	76	Ig2_Follistatin_like Second immunoglobulin (Ig)-li	99.53
cd05722	95	Ig1_Neogenin First immunoglobulin (Ig)-like domain	99.52
cd04967	91	Ig1_Contactin First Ig domain of contactin. Ig1_Co	99.52
cd05734	79	Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain	99.48
cd05861	84	Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like	99.47
cd05874	77	Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of	99.46
cd05875	77	Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-li	99.46
cd05752	78	Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like do	99.46
cd05873	87	Ig_Sema4D_like Immunoglobulin (Ig)-like domain of	99.46
cd05853	85	Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig	99.46
cd05895	76	Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domai	99.45
cd05882	95	Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-	99.44
cd05733	77	Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like dom	99.44
cd04979	89	Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of	99.43
cd07701	95	Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-	99.4
cd05862	86	Ig1_VEGFR First immunoglobulin (Ig)-like domain of	99.36
cd05845	95	Ig2_L1-CAM_like Second immunoglobulin (Ig)-like do	99.36
KOG3513|consensus	1051		99.35
cd07690	94	Ig1_CD4 First immunoglobulin (Ig) domain of CD4. I	99.34
cd05757	92	Ig2_IL1R_like Second immunoglobulin (Ig)-like doma	99.34
cd05717	95	Ig1_Necl-1-3_like First (N-terminal) immunoglobuli	99.33
smart00408	63	IGc2 Immunoglobulin C-2 Type.	99.32
smart00410	86	IG_like Immunoglobulin like. IG domains that canno	99.32
smart00409	86	IG Immunoglobulin.	99.32
cd05860	101	Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of	99.31
cd05871	91	Ig_Semaphorin_classIII Immunoglobulin (Ig)-like do	99.3
KOG3513|consensus	1051		99.28
cd05727	96	Ig2_Contactin-2-like Second Ig domain of the neura	99.28
PF00047	64	ig: Immunoglobulin domain The Prosite family only	99.27
cd05881	95	Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-	99.25
PF13927	75	Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1V	99.24
cd05753	83	Ig2_FcgammaR_like Second immunoglobulin (Ig)-like	99.22
cd04983	109	IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V	99.21
PHA02785	326	IL-beta-binding protein; Provisional	99.2
PF13895	80	Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V	99.17
KOG4194|consensus	873		99.14
PHA02826	227	IL-1 receptor-like protein; Provisional	99.13
cd05899	110	IgV_TCR_beta Immunoglobulin (Ig) variable (V) doma	99.13
cd04980	106	IgV_L_kappa Immunoglobulin (Ig) light chain, kappa	99.1
cd05896	104	Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like	99.06
cd05897	95	Ig2_IL1R2_like Second immunoglobulin (Ig)-like dom	99.06
cd05751	91	Ig1_LILRB1_like First immunoglobulin (Ig)-like dom	99.04
cd05714	106	Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of cho	99.03
cd04982	116	IgV_TCR_gamma Immunoglobulin (Ig) variable (V) dom	99.02
KOG4221|consensus	1381		99.01
cd05872	85	Ig_Sema4B_like Immunoglobulin (Ig)-like domain of	98.98
cd04984	98	IgV_L_lambda Immunoglobulin (Ig) lambda light chai	98.95
cd05900	112	Ig_Aggrecan Immunoglobulin (Ig)-like domain of the	98.92
cd05713	100	Ig_MOG_like Immunoglobulin (Ig)-like domain of mye	98.91
cd05877	106	Ig_LP_like Immunoglobulin (Ig)-like domain of huma	98.9
cd07706	116	IgV_TCR_delta Immunoglobulin (Ig) variable (V) dom	98.89
cd05878	110	Ig_Aggrecan_like Immunoglobulin (Ig)-like domain o	98.89
PHA02826	227	IL-1 receptor-like protein; Provisional	98.89
PF07686	114	V-set: Immunoglobulin V-set domain; InterPro: IPR0	98.87
cd05759	82	Ig2_KIRREL3-like Second immunoglobulin (Ig)-like d	98.87
cd00099	105	IgV Immunoglobulin variable domain (IgV). IgV: Imm	98.85
cd05879	116	Ig_P0 Immunoglobulin (Ig)-like domain of Protein z	98.85
cd05741	92	Ig_CEACAM_D1_like First immunoglobulin (Ig)-like d	98.84
cd05715	116	Ig_P0-like Immunoglobulin (Ig)-like domain of Prot	98.84
cd05880	115	Ig_EVA1 Immunoglobulin (Ig)-like domain of epithel	98.84
cd05885	80	Ig2_Necl-4 Second immunoglobulin (Ig)-like domain	98.82
cd05775	97	Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)	98.8
PHA02785	326	IL-beta-binding protein; Provisional	98.8
cd05716	98	Ig_pIgR Immunoglobulin (Ig)-like domain in the pol	98.77
cd05711	94	Ig_FcalphaRI Immunoglobulin (IG)-like domain of of	98.74
cd05718	98	Ig1_PVR_like First immunoglobulin (Ig) domain of p	98.74
KOG4194|consensus	873		98.74
cd05712	119	Ig_Siglec_N Immunoglobulin (Ig) domain at the N te	98.7
cd07700	107	IgV_CD8_beta Immunoglobulin (Ig) like domain of CD	98.69
cd05902	110	Ig_Neurocan Immunoglobulin (Ig)-like domain of the	98.69
cd05901	117	Ig_Versican Immunoglobulin (Ig)-like domain of the	98.67
cd00098	95	IgC Immunoglobulin Constant domain. IgC: Immunoglo	98.67
cd05846	97	Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain	98.66
cd05720	104	Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD	98.66
cd05774	105	Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain	98.62
cd05888	100	Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain	98.62
cd05761	82	Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like	98.58
PF08205	89	C2-set_2: CD80-like C2-set immunoglobulin domain ;	98.56
cd04981	117	IgV_H Immunoglobulin (Ig) heavy chain (H), variabl	98.56
cd05771	139	IgC_Tapasin_R Tapasin-R immunoglobulin-like domain	98.56
KOG4222|consensus	1281		98.53
cd07694	88	Ig2_CD4 Second immunoglobulin (Ig) domain of CD4.	98.52
cd07698	93	IgC_MHC_I_alpha3 Class I major histocompatibility	98.5
cd00096	74	Ig Immunoglobulin domain. Ig: immunoglobulin (Ig)	98.49
cd05883	82	Ig2_Necl-2 Second immunoglobulin (Ig)-like domain	98.48
PHA02987	189	Ig domain OX-2-like protein; Provisional	98.47
KOG4222|consensus	1281		98.46
cd07705	83	Ig2_Necl-1 Second immunoglobulin (Ig)-like domain	98.39
KOG4221|consensus	1381		98.39
cd05755	100	Ig2_ICAM-1_like Second immunoglobulin (Ig)-like do	98.38
cd05884	83	Ig2_Necl-3 Second immunoglobulin (Ig)-like domain	98.37
cd05887	96	Ig1_Nectin-3_like First immunoglobulin (Ig) domain	98.3
smart00407	75	IGc1 Immunoglobulin C-Type.	98.29
cd05886	99	Ig1_Nectin-1_like First immunoglobulin (Ig) domain	98.28
cd05889	96	Ig1_DNAM-1_like First immunoglobulin (Ig) domain o	98.24
cd05847	94	IgC_CH2_IgE CH2 domain (second constant Ig domain	98.22
cd07699	100	IgC_L Immunoglobulin Constant domain. IgC_L: Immun	98.21
PHA03376	221	BARF1; Provisional	98.17
smart00406	81	IGv Immunoglobulin V-Type.	98.1
cd05767	94	IgC_MHC_II_alpha Class II major histocompatibility	98.02
cd05769	115	IgC_TCR_beta T cell receptor (TCR) beta chain cons	97.98
cd05770	93	IgC_beta2m Class I major histocompatibility comple	97.96
cd07696	96	IgC_CH3 CH3 domain (third constant Ig domain of th	97.92
cd05768	102	IgC_CH4 CH4 domain (fourth constant Ig domain of t	97.82
cd05719	95	Ig2_PVR_like Second immunoglobulin (Ig) domain of	97.74
cd07697	96	IgC_TCR_gamma T cell receptor (TCR) gamma chain co	97.74
PF07654	83	C1-set: Immunoglobulin C1-set domain; InterPro: IP	97.71
cd05772	111	IgC_SIRP Signal-regulatory protein (SIRP) immunogl	97.66
cd05771	139	IgC_Tapasin_R Tapasin-R immunoglobulin-like domain	97.58
PHA02633	63	hypothetical protein; Provisional	97.55
cd04985	95	IgC_CH1 CH1 domain (first constant Ig domain of th	97.5
cd05721	115	IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic	97.43
cd05766	94	IgC_MHC_II_beta Class II major histocompatibility	97.39
cd04986	99	IgC_CH2 CH2 domain (second constant Ig domain of t	97.35
cd07703	95	Ig2_Nectin-2_like Second immunoglobulin (Ig) domai	97.34
cd07691	69	Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain	96.88
PF07354	271	Sp38: Zona-pellucida-binding protein (Sp38); Inter	96.52
KOG3515|consensus	741		96.5
cd07692	65	Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of	96.06
PF08204	130	V-set_CD47: CD47 immunoglobulin-like domain; Inter	95.74
PHA02982	251	hypothetical protein; Provisional	95.7
PHA03052	69	Hypothetical protein; Provisional	95.54
cd07704	97	Ig2_Nectin-3-4_like Second immunoglobulin (Ig) dom	95.26
PF11465	108	Receptor_2B4: Natural killer cell receptor 2B4; In	94.83
KOG4597|consensus	560		94.37
KOG1480|consensus	909		93.18
cd07689	99	Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain	93.0
PHA02914	500	Immunoglobulin-like domain protein; Provisional	92.33
KOG3515|consensus	741		92.05
PHA03042	286	CD47-like protein; Provisional	90.7
PF06328	89	Lep_receptor_Ig: Ig-like C2-type domain; InterPro:	89.62
PHA02865	338	MHC-like TNF binding protein; Provisional	89.49

>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

Probab=99.82  E-value=3.1e-18  Score=78.44  Aligned_cols=89  Identities=25%  Similarity=0.416  Sum_probs=71.3

Q ss_pred             CCeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEE
Q psy4613           1 HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKC   80 (96)
Q Consensus         1 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c   80 (96)
                      +|.+...+....+..|+.+.|.|.+.+.|.|.+.|++++..+. ...++.+....     ....|.|.+++..|.|.|.|
T Consensus         3 ~~~~~~~p~~~~~~~G~~~~L~C~~~g~P~p~v~W~k~g~~l~-~~~~~~~~~~~-----~~~~L~i~~~~~~D~G~Y~C   76 (92)
T cd05747           3 PATILTKPRSLTVSEGESARFSCDVDGEPAPTVTWMREGQIIV-SSQRHQITSTE-----YKSTFEISKVQMSDEGNYTV   76 (92)
T ss_pred             CCcccccCccEEEeCCCcEEEEEEEeecCCCEEEEEECCEECC-CCCcEEEEEcC-----CeeEEEECCCCcccCEeEEE
Confidence            4677777788899999999999999999999999999865442 33344433211     23689999999999999999


Q ss_pred             EEecCCCceEEEEEe
Q psy4613          81 IAKNSLGEVESSIRL   95 (96)
Q Consensus        81 ~~~~~~g~~~~~~~l   95 (96)
                      .+.|..|.....+.|
T Consensus        77 ~a~N~~G~~~~~~~l   91 (92)
T cd05747          77 VVENSEGKQEAQFTL   91 (92)
T ss_pred             EEEcCCCCEeEEEEe
Confidence            999999998888766

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.

>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1

Probab=99.81  E-value=1.2e-18  Score=79.22  Aligned_cols=86  Identities=27%  Similarity=0.344  Sum_probs=69.2

Q ss_pred             CCeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEE
Q psy4613           1 HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKC   80 (96)
Q Consensus         1 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c   80 (96)
                      +|.+...+....+..|+.+.|.|.+.|.|.|.+.|++++..+. ...+.  ..       ....|.|.++...|.|.|.|
T Consensus         1 ~p~i~~~~~~~~~~~G~~v~l~C~~~G~P~P~v~W~k~~~~~~-~~~~~--~~-------~~~~L~I~~v~~~D~G~Y~C   70 (88)
T cd05851           1 PADINVKFKDTYALKGQNVTLECFALGNPVPVIRWRKILEPMP-ATAEI--SM-------SGAVLKIFNIQPEDEGTYEC   70 (88)
T ss_pred             CCceEEccccEEEeCCCcEEEEEEecccCCCEEEEEECCcCCC-CCCEE--ec-------CCCEEEECcCChhhCEEEEE
Confidence            5778888888889999999999999999999999999865432 11111  11       12468999999999999999


Q ss_pred             EEecCCCceEEEEEeC
Q psy4613          81 IAKNSLGEVESSIRLY   96 (96)
Q Consensus        81 ~~~~~~g~~~~~~~l~   96 (96)
                      .+.|..|.......|+
T Consensus        71 ~A~N~~G~~~~~~~l~   86 (88)
T cd05851          71 EAENIKGKDKHQARVY   86 (88)
T ss_pred             EEEcCCCceEEEEEEE
Confidence            9999999988887763

Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK)

Probab=99.81  E-value=5.7e-18  Score=78.32  Aligned_cols=88  Identities=20%  Similarity=0.274  Sum_probs=70.9

Q ss_pred             CeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEE
Q psy4613           2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCI   81 (96)
Q Consensus         2 p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~   81 (96)
                      |.+...+..+.+..|+.+.|.|.+.|.|.+.+.|++++..+. ...++.+....     ..+.|.|..+...|.|.|.|.
T Consensus         1 p~~~~~p~~~~v~~G~~v~l~C~~~G~p~p~v~W~kdg~~l~-~~~~~~~~~~~-----~~s~L~I~~~~~~D~G~Ytc~   74 (98)
T cd05762           1 PQIIQFPEDMKVRAGESVELFCKVTGTQPITCTWMKFRKQIQ-EGEGIKIENTE-----NSSKLTITEGQQEHCGCYTLE   74 (98)
T ss_pred             CceEECCcCEEEECCCEEEEEEEEcccCCCceEEEECCEEec-CCCcEEEEecC-----CeeEEEECCCChhhCEEEEEE
Confidence            556677788889999999999999999999999999876553 33444433211     246799999999999999999


Q ss_pred             EecCCCceEEEEEe
Q psy4613          82 AKNSLGEVESSIRL   95 (96)
Q Consensus        82 ~~~~~g~~~~~~~l   95 (96)
                      +.|..|...+.+.|
T Consensus        75 a~N~~G~~~~~~~l   88 (98)
T cd05762          75 VENKLGSRQAQVNL   88 (98)
T ss_pred             EEcCCCceeEEEEE
Confidence            99999998877765

Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has

>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C)

Probab=99.79  E-value=2.8e-17  Score=74.39  Aligned_cols=82  Identities=20%  Similarity=0.271  Sum_probs=64.6

Q ss_pred             ceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCc
Q psy4613           9 QLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGE   88 (96)
Q Consensus         9 ~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~   88 (96)
                      ..+.+..|+.+.|.|.+.|.|.|.+.|++++..+.....++......     ....|.|..+...|+|.|.|.+.|..|.
T Consensus         3 ~~~~v~~G~~v~l~c~~~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~-----~~~~L~I~~~~~~D~G~Y~c~a~N~~G~   77 (86)
T cd05894           3 NTIVVVAGNKLRLDVPISGEPAPTVTWSRGDKAFTETEGRVRVESYK-----DLSSFVIEGAEREDEGVYTITVTNPVGE   77 (86)
T ss_pred             CEEEEEcCCEEEEEeeEeecCCCeEEEEECCEECccCCCeEEEEEcC-----CeEEEEECCCccCcCEEEEEEEEeCCCc
Confidence            35678899999999999999999999999876553222344333211     2467999999999999999999999999


Q ss_pred             eEEEEEe
Q psy4613          89 VESSIRL   95 (96)
Q Consensus        89 ~~~~~~l   95 (96)
                      ....+.|
T Consensus        78 ~~~~~~l   84 (86)
T cd05894          78 DHASLFV   84 (86)
T ss_pred             EEEEEEE
Confidence            8877765

Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.

>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=99.77  E-value=1.3e-16  Score=72.69  Aligned_cols=88  Identities=38%  Similarity=0.576  Sum_probs=72.7

Q ss_pred             CeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEE
Q psy4613           2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCI   81 (96)
Q Consensus         2 p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~   81 (96)
                      |.+...+..+.+..|+.+.|.|.+.+.|.+.+.|++++..+. ...++......     ....|.|.++...|.|.|.|.
T Consensus         1 P~~~~~~~~~~v~~G~~~~l~c~~~~~p~~~v~W~~~~~~l~-~~~~~~~~~~~-----~~~~L~I~~v~~~D~G~Y~C~   74 (90)
T PF07679_consen    1 PVFTKKPKDVTVKEGESVTLECEVSGNPPPTVTWYKNGRPLT-SSQRYQIESDG-----GSSSLTIKNVTREDAGTYTCV   74 (90)
T ss_dssp             EEEEEESSEEEEETTSEEEEEEEEEESSSSEEEEEETTEEEE-SSSSEEEEEET-----TEEEEEESSESGGGSEEEEEE
T ss_pred             CEEEEecCCEEEeCCCEEEEEEEEEeCCCCccccccccccee-eeeeeeeeccc-----ceeEEccCCCChhhCEEEEEE
Confidence            667777888999999999999999999999999999965554 34555544322     457899999999999999999


Q ss_pred             EecCCCceEEEEEe
Q psy4613          82 AKNSLGEVESSIRL   95 (96)
Q Consensus        82 ~~~~~g~~~~~~~l   95 (96)
                      +.+..|.....+.|
T Consensus        75 ~~n~~g~~~~~~~l   88 (90)
T PF07679_consen   75 ASNSSGEATASVNL   88 (90)
T ss_dssp             EEETTEEEEEEEEE
T ss_pred             EEECCCEEEEEEEE
Confidence            99999988877765

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....

>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.77  E-value=1.4e-16  Score=73.58  Aligned_cols=90  Identities=24%  Similarity=0.369  Sum_probs=66.9

Q ss_pred             CCeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecc----cceEEEEeccccceEEEEEEEccCCCCCCe
Q psy4613           1 HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISS----ERYEVESISRSIFDFKMRLTIKKITKYDLG   76 (96)
Q Consensus         1 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g   76 (96)
                      +|.|...+....+..|+.+.|.|.+.|.|.|.+.|++++..+....    .++....     ....+.|.|.+++..|.|
T Consensus         2 ~p~i~~~~~~~~~~~g~~v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~v~~-----~~~~~~L~I~~v~~~D~G   76 (97)
T cd05869           2 KPKITYVENQTAMELEEQITLTCEASGDPIPSITWRTSTRNISSEEKTLDGHIVVRS-----HARVSSLTLKYIQYTDAG   76 (97)
T ss_pred             CceEEEccCceEEEcCCCEEEEEEeeEeCCCEEEEEECCccccCCccccCccEEEEc-----CccEEEEEEecCccCcCE
Confidence            4777776666666678999999999999999999998754432110    1111111     012367999999999999


Q ss_pred             eEEEEEecCCCceEEEEEe
Q psy4613          77 SYKCIAKNSLGEVESSIRL   95 (96)
Q Consensus        77 ~y~c~~~~~~g~~~~~~~l   95 (96)
                      .|.|.+.|..|.....+.|
T Consensus        77 ~Y~C~A~N~~G~~~~~~~l   95 (97)
T cd05869          77 EYLCTASNTIGQDSQSMYL   95 (97)
T ss_pred             EEEEEEecCCCCeeEEEEE
Confidence            9999999999998888776

Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr

>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.76  E-value=4.1e-17  Score=75.14  Aligned_cols=88  Identities=30%  Similarity=0.523  Sum_probs=65.4

Q ss_pred             CCeEEecC--ceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeE
Q psy4613           1 HPVIHVPN--QLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSY   78 (96)
Q Consensus         1 ~p~~~~~~--~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y   78 (96)
                      +|.+....  ....+..|+.+.|.|.+.|.|.|.+.|++++..+.....++....       ....|.|.++...|.|.|
T Consensus         1 pp~i~~~~~~~~~~~~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~-------~~~~L~I~~v~~~D~G~Y   73 (95)
T cd05730           1 PPTIRARQSEVNATANLGQSVTLACDADGFPEPTMTWTKDGEPIESGEEKYSFNE-------DGSEMTILDVDKLDEAEY   73 (95)
T ss_pred             CCccccCCcccceEEeCCCCEEEEEeccEeCCCEEEEEECCEECcCCCCEEEEeC-------CCCEEEECCCChhhCEEE
Confidence            45555544  334678999999999999999999999998655432212222211       225699999999999999


Q ss_pred             EEEEecCCCceEEEEEe
Q psy4613          79 KCIAKNSLGEVESSIRL   95 (96)
Q Consensus        79 ~c~~~~~~g~~~~~~~l   95 (96)
                      .|.+.|..|.....+.|
T Consensus        74 ~C~a~N~~G~~~~~~~L   90 (95)
T cd05730          74 TCIAENKAGEQEAEIHL   90 (95)
T ss_pred             EEEEEcCCCeEEEEEEE
Confidence            99999999988777655

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the

>cd04968 Ig3_Contactin_like Third Ig domain of contactin

Probab=99.76  E-value=1.2e-16  Score=72.60  Aligned_cols=85  Identities=29%  Similarity=0.343  Sum_probs=66.2

Q ss_pred             CCeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEE
Q psy4613           1 HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKC   80 (96)
Q Consensus         1 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c   80 (96)
                      +|.+...+....+..|+.+.|.|.+.+.|.|.+.|++++.... ......  .       ....|.|.+++..|.|.|.|
T Consensus         1 p~~~~~~p~~~~~~~g~~v~l~C~~~g~P~p~v~W~k~~~~~~-~~~~~~--~-------~~~~L~i~~v~~~D~G~Y~C   70 (88)
T cd04968           1 PSIIVVFPKDTYALKGQNVTLECFALGNPVPQIKWRKVDGSMP-SSAEIS--M-------SGAVLKIPNIQFEDEGTYEC   70 (88)
T ss_pred             CCcEEECCCceEEeCCCcEEEEEEeeEeCCCEEEEEECCCcCC-CccEEE--E-------eCCEEEECCCCcccCEEEEE
Confidence            3555666677778899999999999999999999999765432 111111  1       23679999999999999999


Q ss_pred             EEecCCCceEEEEEe
Q psy4613          81 IAKNSLGEVESSIRL   95 (96)
Q Consensus        81 ~~~~~~g~~~~~~~l   95 (96)
                      .+.|..|.......|
T Consensus        71 ~a~N~~G~~~~~~~l   85 (88)
T cd04968          71 EAENIKGKDTHQGRI   85 (88)
T ss_pred             EEEECCCcEEEEEEE
Confidence            999999988777665

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein

Probab=99.75  E-value=3.6e-16  Score=71.59  Aligned_cols=85  Identities=22%  Similarity=0.320  Sum_probs=65.5

Q ss_pred             ecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecC
Q psy4613           6 VPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNS   85 (96)
Q Consensus         6 ~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~   85 (96)
                      ..+..+.+..|+.+.|.|.+.+.|.|.+.|++++..+. ...++......  .  ....|.|.++...|+|.|.|.+.|.
T Consensus         6 ~lp~~v~v~~G~~v~L~C~v~G~P~p~v~W~k~g~~l~-~~~~~~~~~~~--~--~~~~L~I~~v~~~D~G~Y~C~a~N~   80 (92)
T cd05737           6 GLPDVVTIMEGKTLNLTCTVFGDPDPEVSWLKNDQALA-LSDHYNVKVEQ--G--KYASLTIKGVSSEDSGKYGIVVKNK   80 (92)
T ss_pred             cCCceEEEeCCCcEEEEEEEEecCCCeEEEEECCEECc-cCCCEEEEEcC--C--CEEEEEEccCChhhCEEEEEEEEEC
Confidence            34556778999999999999999999999999865543 33344332210  0  1357999999999999999999999


Q ss_pred             CCceEEEEEe
Q psy4613          86 LGEVESSIRL   95 (96)
Q Consensus        86 ~g~~~~~~~l   95 (96)
                      .|.....+.|
T Consensus        81 ~G~~~~~~~v   90 (92)
T cd05737          81 YGGETVDVTV   90 (92)
T ss_pred             CCcceEEEEE
Confidence            9988877765

Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.

>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin

Probab=99.74  E-value=1.5e-16  Score=70.19  Aligned_cols=73  Identities=29%  Similarity=0.441  Sum_probs=56.2

Q ss_pred             EEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCceEEEEEe
Q psy4613          19 VTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL   95 (96)
Q Consensus        19 ~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~~~~~~l   95 (96)
                      +.|.|.+.|.|.|.+.|++++..+.....++.+....  .  ...+|.|.++...|.|.|.|.+.|..|.......|
T Consensus         1 v~l~C~v~G~P~P~i~W~k~~~~i~~~~~r~~~~~~~--~--g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~L   73 (75)
T cd05892           1 VKLECQISAIPPPKIFWKRNNEMVQYNTDRISLYQDN--S--GRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHARL   73 (75)
T ss_pred             CEEEEEEEecCCCeEEEEECCEECcCCCCeEEEEEcC--C--CcEEEEECCCChhhCEEEEEEEEcCcCeEEEEEEE
Confidence            4689999999999999999876554333444433211  0  12479999999999999999999999998887766

Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.

>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.74  E-value=5.6e-16  Score=70.71  Aligned_cols=84  Identities=17%  Similarity=0.199  Sum_probs=64.2

Q ss_pred             ecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecC
Q psy4613           6 VPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNS   85 (96)
Q Consensus         6 ~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~   85 (96)
                      .++....+..|+.+.|.|.+.|.|.|.+.|++++..+.. ........     ......|.|..++..|.|.|.|.+.|.
T Consensus         5 ~~p~~~~v~~G~~v~l~C~~~G~P~p~v~W~~~g~~~~~-~~~~~~~~-----~~~~~~L~I~~v~~~D~g~Y~C~A~N~   78 (90)
T cd04972           5 DGPNATVVYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQ-TRTDTLET-----TVDIYNLQLSNITSETQTTVTCTAENP   78 (90)
T ss_pred             cCCcCEEEcCCCcEEEEEEEEEcCCCeEEEEECCEEccC-CccEEEEe-----cCCEEEEEEecCCcccCEEEEEEEECC
Confidence            345566689999999999999999999999998765431 11111111     013467999999999999999999999


Q ss_pred             CCceEEEEEe
Q psy4613          86 LGEVESSIRL   95 (96)
Q Consensus        86 ~g~~~~~~~l   95 (96)
                      .|.......|
T Consensus        79 ~G~~~~~~~L   88 (90)
T cd04972          79 VGQANVSVQV   88 (90)
T ss_pred             CCceeEEEEE
Confidence            9998887765

TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo

>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.74  E-value=1.3e-16  Score=70.75  Aligned_cols=73  Identities=18%  Similarity=0.303  Sum_probs=56.0

Q ss_pred             CCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCceEEEEEe
Q psy4613          16 DTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL   95 (96)
Q Consensus        16 g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~~~~~~l   95 (96)
                      |+.+.|.|.+.+.|.|.+.|++++..+...........       ....|.|.+++..|.|.|.|.+.|..|.....+.|
T Consensus         1 G~~v~l~C~~~G~P~p~i~W~k~g~~i~~~~~~~~~~~-------~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l   73 (76)
T cd05867           1 GETARLDCQVEGIPTPNITWSINGAPIEGTDPDPRRHV-------SSGALILTDVQPSDTAVYQCEARNRHGNLLANAHV   73 (76)
T ss_pred             CCeEEEEEEeeEeCCCeEEEEECCEECCCCCCCceEEe-------eCCEEEECCCChhhCEEEEEEEECCCCeEEEEEEE
Confidence            67899999999999999999998655432111111111       23579999999999999999999999998877765

Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM)

Probab=99.73  E-value=1.1e-15  Score=70.81  Aligned_cols=89  Identities=26%  Similarity=0.334  Sum_probs=64.7

Q ss_pred             CCeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccc--eeEe----cccceEEEEeccccceEEEEEEEccCCCCC
Q psy4613           1 HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQG--DMVI----SSERYEVESISRSIFDFKMRLTIKKITKYD   74 (96)
Q Consensus         1 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~--~~~~----~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d   74 (96)
                      +|.+..+ ....+..|+.+.|.|.+.+.|.|.+.|++...  .+..    ...++.+...     .....|.|.+++..|
T Consensus         2 ~p~i~~~-~~~~~~~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~~-----~~~~~L~I~~v~~~D   75 (98)
T cd05870           2 QPHIIQL-KNETTVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQ-----HGESSLHIKDVKLSD   75 (98)
T ss_pred             CCEEEee-ccEEEcCCCcEEEEEecccCCCCeEEEEECCCCceeccCCcCcCceEEEeec-----CCeeEEEEeeCCcCC
Confidence            4666553 45678899999999999999999999998532  2210    0122222110     023579999999999


Q ss_pred             CeeEEEEEecCCCceEEEEEe
Q psy4613          75 LGSYKCIAKNSLGEVESSIRL   95 (96)
Q Consensus        75 ~g~y~c~~~~~~g~~~~~~~l   95 (96)
                      .|.|.|.+.|..|....++.|
T Consensus        76 ~G~Y~C~A~N~~G~~~~~~~l   96 (98)
T cd05870          76 SGRYDCEAASRIGGHQKSMYL   96 (98)
T ss_pred             CEEEEEEEeccCCcceeEEEE
Confidence            999999999999988877765

Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.73  E-value=7.8e-17  Score=71.07  Aligned_cols=72  Identities=24%  Similarity=0.433  Sum_probs=57.4

Q ss_pred             CCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCceEEEEE
Q psy4613          15 IDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIR   94 (96)
Q Consensus        15 ~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~~~~~~   94 (96)
                      +|..+.|.|.+.+.|.|.+.|++++..+. ...+....        ....|.|.+++..|.|.|.|.+.|..|.....+.
T Consensus         1 eG~~v~l~C~~~g~P~p~i~W~k~g~~~~-~~~~~~~~--------~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~   71 (74)
T cd05745           1 EGQTVDFLCEAQGYPQPVIAWTKGGSQLS-VDRRHLVL--------SSGTLRISRVALHDQGQYECQAVNIVGSQRTVAQ   71 (74)
T ss_pred             CCCeEEEEeECCEecCCEEEEEECCEECC-CCCCeEEc--------cCCeEEEeeCCHHhCEEEEEEEEeCCCceeEEEE
Confidence            47899999999999999999999865543 22222221        1357999999999999999999999999888776


Q ss_pred             e
Q psy4613          95 L   95 (96)
Q Consensus        95 l   95 (96)
                      |
T Consensus        72 L   72 (74)
T cd05745          72 L   72 (74)
T ss_pred             E
Confidence            6

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.

>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1

Probab=99.73  E-value=1.3e-16  Score=70.06  Aligned_cols=71  Identities=34%  Similarity=0.490  Sum_probs=57.2

Q ss_pred             CCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCceEEEEEe
Q psy4613          16 DTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL   95 (96)
Q Consensus        16 g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~~~~~~l   95 (96)
                      |+.+.|.|.+.+.|.|.+.|++++..+. ...++.+..        ...|.|.+++..|.|.|.|.+.|..|.......|
T Consensus         1 G~~~~l~C~~~g~P~p~v~W~k~~~~l~-~~~r~~~~~--------~g~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l   71 (73)
T cd05852           1 GGRVIIECKPKAAPKPKFSWSKGTELLV-NNSRISIWD--------DGSLEILNITKLDEGSYTCFAENNRGKANSTGVL   71 (73)
T ss_pred             CCeEEEEEecceeCCCEEEEEeCCEecc-cCCCEEEcC--------CCEEEECcCChhHCEEEEEEEECCCCceeEEEEE
Confidence            6789999999999999999999865432 344544321        2579999999999999999999999998877765

Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins

Probab=99.73  E-value=9.2e-16  Score=71.20  Aligned_cols=86  Identities=20%  Similarity=0.276  Sum_probs=63.8

Q ss_pred             ceeeecCCCcEEEEEEeee-cccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCC
Q psy4613           9 QLVGAPIDTDVTLECYVEA-YPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLG   87 (96)
Q Consensus         9 ~~~~~~~g~~~~l~c~~~~-~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g   87 (96)
                      ..+.+..|+++.|.|.+.+ .|.|.+.|++++..+. ......+.............|.|..++..|+|.|.|.+.|..|
T Consensus        11 ~~~~v~~G~~v~L~c~v~g~~P~p~v~W~Kdg~~i~-~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G   89 (101)
T cd04975          11 TTIFVNLGENLNLVVEVEAYPPPPHINWTYDNRTLT-NKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDA   89 (101)
T ss_pred             ceEEEECCCCEEEEEEEEecCCCCccEEEeCCeeCC-CCcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCc
Confidence            4577899999999999999 8999999999876553 2222211111000111347899999999999999999999999


Q ss_pred             ceEEEEEe
Q psy4613          88 EVESSIRL   95 (96)
Q Consensus        88 ~~~~~~~l   95 (96)
                      .....+.|
T Consensus        90 ~~~~t~~L   97 (101)
T cd04975          90 SKSLTFEL   97 (101)
T ss_pred             cEEEEEEE
Confidence            88877765

Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes

>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2

Probab=99.73  E-value=1.2e-15  Score=69.77  Aligned_cols=80  Identities=25%  Similarity=0.420  Sum_probs=60.6

Q ss_pred             EecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEec
Q psy4613           5 HVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKN   84 (96)
Q Consensus         5 ~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~   84 (96)
                      ..++....+..|+.+.|.|.+.|.|. .+.|++.+........++......     ....|.|..+...|.|.|.|.+.|
T Consensus         4 ~~~~~~~~v~~G~~v~l~C~~~G~P~-~v~W~k~~g~~~~~~~r~~~~~~g-----~~~~L~I~~v~~~D~G~Y~C~A~N   77 (92)
T cd05866           4 SISLSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIVSSQRVVVQKEG-----VRSRLTIYNANIEDAGIYRCQATD   77 (92)
T ss_pred             EEEecceEEcCCCeEEEEEEEEEeCC-eEEEEeCCCeEecCCCCEEEEeCC-----CeeEEEEecCChHHCEEEEEEEEc
Confidence            44556677899999999999999887 899998644443344454433211     235799999999999999999999


Q ss_pred             CCCceE
Q psy4613          85 SLGEVE   90 (96)
Q Consensus        85 ~~g~~~   90 (96)
                      ..|...
T Consensus        78 ~~G~~~   83 (92)
T cd05866          78 AKGQTQ   83 (92)
T ss_pred             CCCcEE
Confidence            998753

Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=99.73  E-value=2.7e-16  Score=71.05  Aligned_cols=80  Identities=28%  Similarity=0.446  Sum_probs=63.9

Q ss_pred             ecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecC
Q psy4613           6 VPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNS   85 (96)
Q Consensus         6 ~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~   85 (96)
                      ..+....+..|+.+.|.|.+.+.|.|.+.|++++..+. ...+...         ....|.|.++...|.|.|.|.+.|.
T Consensus         4 ~~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~g~~~~-~~~~~~~---------~~~~L~i~~~~~~D~G~Y~C~a~N~   73 (85)
T cd05728           4 KVISDTEADIGSSLRWECKASGNPRPAYRWLKNGQPLA-SENRIEV---------EAGDLRITKLSLSDSGMYQCVAENK   73 (85)
T ss_pred             ccCCccEEcCCCcEEEEEEeeEeCCCEEEEEECCEECC-CCCeEEE---------eCCEEEEeeCCHHHCEEEEEEEECC
Confidence            34556778899999999999999999999999866543 2223322         2356899999999999999999999


Q ss_pred             CCceEEEEEe
Q psy4613          86 LGEVESSIRL   95 (96)
Q Consensus        86 ~g~~~~~~~l   95 (96)
                      .|.....+.|
T Consensus        74 ~G~~~~~~~l   83 (85)
T cd05728          74 HGTIYASAEL   83 (85)
T ss_pred             CCeEEEEEEE
Confidence            9998877765

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1

Probab=99.72  E-value=1.7e-15  Score=69.79  Aligned_cols=87  Identities=21%  Similarity=0.307  Sum_probs=61.5

Q ss_pred             EecCceeeecCCCcEEEEEEeeeccc-ceeEEee-ccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEE
Q psy4613           5 HVPNQLVGAPIDTDVTLECYVEAYPK-SINYWVR-DQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIA   82 (96)
Q Consensus         5 ~~~~~~~~~~~g~~~~l~c~~~~~~~-~~~~w~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~   82 (96)
                      ...+....+..|+.+.|.|.+.+.|. |.+.|++ ++..+.....++......  .  ..++|.|..++..|.|.|.|.+
T Consensus         4 ~~~p~~~~v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~~~~r~~v~~~~--~--~~~~L~I~~v~~~D~G~YtC~A   79 (96)
T cd05865           4 DIVPSQGEISVGESKFFLCQVAGEAKDKDISWFSPNGEKLTPNQQRISVVRND--D--YSSTLTIYNANIDDAGIYKCVV   79 (96)
T ss_pred             EEeCCccEECCCCeEEEEEEEeCCCCCCEEEEECCCCcCccccCCeEEEEeCC--C--CceEEEEeccChhhCEEEEEEE
Confidence            34455556889999999999999985 6999998 443332212233222110  0  2368999999999999999999


Q ss_pred             ecCC-CceEEEEEe
Q psy4613          83 KNSL-GEVESSIRL   95 (96)
Q Consensus        83 ~~~~-g~~~~~~~l   95 (96)
                      .|.. |...+++.|
T Consensus        80 ~N~~~g~~~~s~~l   93 (96)
T cd05865          80 SNEDEGESEATVNV   93 (96)
T ss_pred             EcCCCCcEEEEEEE
Confidence            9996 777766554

Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans

>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.72  E-value=1.2e-15  Score=69.31  Aligned_cols=79  Identities=23%  Similarity=0.284  Sum_probs=59.2

Q ss_pred             CCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCceEEEEEe
Q psy4613          16 DTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL   95 (96)
Q Consensus        16 g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~~~~~~l   95 (96)
                      |+.+.|.|.+.+.|.+.+.|.+++..+.....++.+.... ......+.|.|.++...|.|.|.|.+.|..|.....+.|
T Consensus         1 g~~~~l~C~~~g~p~~~i~W~k~~~~i~~~~~r~~~~~~~-~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~L   79 (88)
T cd05735           1 GQKKEMSCTAHGEKPIIVRWEKEDRIINPEMSRYLVSTKE-VGDEVISTLQILPTVREDSGFFSCHAINSYGEDRGIIQL   79 (88)
T ss_pred             CCeEEEEEEEECCCCCEEEEeeCCEECCCCCCcEEEEEec-CCCcEEEEEEECCCCcccCEEEEEEEEcCCCcceEEEEE
Confidence            6789999999999999999999865442222344433211 111245789999999999999999999999998877765

Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins

Probab=99.71  E-value=1.2e-15  Score=70.39  Aligned_cols=89  Identities=27%  Similarity=0.340  Sum_probs=65.2

Q ss_pred             CCeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEec----ccceEEEEeccccceEEEEEEEccCCCCCCe
Q psy4613           1 HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVIS----SERYEVESISRSIFDFKMRLTIKKITKYDLG   76 (96)
Q Consensus         1 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g   76 (96)
                      +|.+.... ...+..|+.+.|.|.+.+.|.|.+.|++.+..+...    ..++....     ......|.|.++...|.|
T Consensus         2 ~P~i~~~~-~~~~~~g~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~L~I~~v~~~D~G   75 (96)
T cd05732           2 QPKITYLE-NQTAVELEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVRG-----HARVSSLTLKDVQLTDAG   75 (96)
T ss_pred             CccceecC-ceeEecCCcEEEEEEEeEcCCCcEEEEECCcccCCCCccccceEEEeC-----CccEEEEEECcCCcCcCE
Confidence            46665433 456788999999999999999999999876333211    11121111     012468999999999999


Q ss_pred             eEEEEEecCCCceEEEEEe
Q psy4613          77 SYKCIAKNSLGEVESSIRL   95 (96)
Q Consensus        77 ~y~c~~~~~~g~~~~~~~l   95 (96)
                      .|.|.+.|..|....++.|
T Consensus        76 ~Y~C~a~N~~G~~~~s~~l   94 (96)
T cd05732          76 RYDCEASNRIGGDQQSMYL   94 (96)
T ss_pred             EeEEEEEeCCCCcEEEEEE
Confidence            9999999999998887766

Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole

>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha

Probab=99.71  E-value=5.1e-16  Score=72.11  Aligned_cols=85  Identities=19%  Similarity=0.234  Sum_probs=62.3

Q ss_pred             eeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEE-EeccccceEEEEEEEccCCCCCCeeEEEEEecCCCc
Q psy4613          10 LVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVE-SISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGE   88 (96)
Q Consensus        10 ~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~   88 (96)
                      ...+..+..+.|.|.+.+.|.|.+.|++++..+. ...+.... ..........+.|.|..++..|+|.|.|.+.|..|.
T Consensus        12 ~~~~~~~~~~~l~~~v~g~P~P~v~W~kdg~~l~-~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~   90 (101)
T cd05859          12 LEFANLHEVKEFVVEVEAYPPPQIRWLKDNRTLI-ENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAV   90 (101)
T ss_pred             eEEEecCCcEEEEEEEEEeCCCceEEEECCEECc-CCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCce
Confidence            4567889999999999999999999999976654 22211111 000001112468999999999999999999999998


Q ss_pred             eEEEEEe
Q psy4613          89 VESSIRL   95 (96)
Q Consensus        89 ~~~~~~l   95 (96)
                      ...++.|
T Consensus        91 ~~~t~~l   97 (101)
T cd05859          91 KSYTFAL   97 (101)
T ss_pred             EEEEEEE
Confidence            8777665

IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.

>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin

Probab=99.71  E-value=6e-16  Score=68.32  Aligned_cols=73  Identities=30%  Similarity=0.459  Sum_probs=55.4

Q ss_pred             EEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCceEEEEEe
Q psy4613          19 VTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL   95 (96)
Q Consensus        19 ~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~~~~~~l   95 (96)
                      +.|.|.+.|.|.|.+.|++++..+.....++...... .   ....|.|..++..|.|.|.|.+.|..|....+..|
T Consensus         1 v~l~C~v~G~P~P~v~W~k~~~~l~~~~~~~~~~~~~-~---~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L   73 (75)
T cd05893           1 VRLECRVSGVPHPQIFWKKENESLTHNTDRVSMHQDN-C---GYICLLIQGATKEDAGWYTVSAKNEAGIVSCTARL   73 (75)
T ss_pred             CEEEEEEeEecCCEEEEEECCEECCCCCCeEEEEEcC-C---CEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEEE
Confidence            4689999999999999999876554323344332211 0   12368999999999999999999999998887765

Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.

>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin

Probab=99.71  E-value=1.6e-15  Score=71.36  Aligned_cols=94  Identities=26%  Similarity=0.379  Sum_probs=64.6

Q ss_pred             CCeEEecCc--eeee--cCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCC-CCCC
Q psy4613           1 HPVIHVPNQ--LVGA--PIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKIT-KYDL   75 (96)
Q Consensus         1 ~p~~~~~~~--~~~~--~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~   75 (96)
                      +|.+..++.  .+..  ..|..+.|.|.+.+.|.+.+.|++++..+.....++...... ......+.|.|.++. ..|.
T Consensus         4 ~P~~~~~~~~~~~~~~~~~g~~v~L~C~a~G~P~p~i~W~k~g~~l~~~~~r~~~~~~~-~~~~~~s~L~I~~v~~~~D~   82 (109)
T cd05773           4 APDLQKGPQLRKVASRGDGSSDANLVCQAQGVPRVQFRWAKNGVPLDLGNPRYEETTEH-TGTVHTSILTIINVSAALDY   82 (109)
T ss_pred             ccccccCCceEEEEEecCCCCEEEEEEECcccCCCEEEEEECCEECCCCCCeEEEEeec-cCccceeEEEECcCCccCCC
Confidence            466655554  2222  356889999999999999999999875543223344322211 111124679999987 5899


Q ss_pred             eeEEEEEecCCCceEEEEEe
Q psy4613          76 GSYKCIAKNSLGEVESSIRL   95 (96)
Q Consensus        76 g~y~c~~~~~~g~~~~~~~l   95 (96)
                      |.|.|.+.|..|.....+.|
T Consensus        83 G~Y~C~A~N~~G~~~~~i~L  102 (109)
T cd05773          83 ALFTCTAHNSLGEDSLDIQL  102 (109)
T ss_pred             EEEEEEEEeCCccCcEEEEE
Confidence            99999999999988777655

Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p

>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin

Probab=99.71  E-value=1.1e-15  Score=67.51  Aligned_cols=73  Identities=29%  Similarity=0.441  Sum_probs=55.4

Q ss_pred             EEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCceEEEEEe
Q psy4613          19 VTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL   95 (96)
Q Consensus        19 ~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~~~~~~l   95 (96)
                      +.|.|.+.|.|.|.+.|++++..+.....++...... .   ....|.|..++..|.|.|.|.+.|..|.......|
T Consensus         1 v~L~C~v~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~-~---~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l   73 (75)
T cd05744           1 VRLECRVSAIPPPQIFWKKNNEMLTYNTDRISLYQDN-C---GRICLLIQNANKEDAGWYTVSAVNEAGVVSCNARL   73 (75)
T ss_pred             CEEEEEEeecCCCeEEEEECCEECCCCCCcEEEEEcC-C---CeEEEEECCCCcccCEEEEEEEEcCCCcEEEEEEE
Confidence            4689999999999999999875553223344332211 0   12469999999999999999999999998888766

Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).

>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule)

Probab=99.70  E-value=7e-16  Score=68.32  Aligned_cols=73  Identities=19%  Similarity=0.271  Sum_probs=55.4

Q ss_pred             CCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCceEEEEEe
Q psy4613          16 DTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL   95 (96)
Q Consensus        16 g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~~~~~~l   95 (96)
                      |+.+.|.|.+.|.|.|.+.|++++..+...........       ....+.|..++..|.|.|.|.+.|..|.....+.|
T Consensus         1 g~~~~l~C~a~G~P~P~i~W~k~g~~i~~~~~~~~~~~-------~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l   73 (76)
T cd05868           1 GEDGTLICRANGNPKPSISWLTNGVPIEIAPTDPSRKV-------DGDTIIFSKVQERSSAVYQCNASNEYGYLLANAFV   73 (76)
T ss_pred             CCCEEEEEEeeEeCCCeEEEEECCEEccccCCCceEEe-------cCCEEEECCCCHhhCEEEEEEEEcCCCEEEEEEEE
Confidence            67899999999999999999998755432111111111       12468889999999999999999999998887765

Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins

Probab=99.70  E-value=4.6e-15  Score=68.67  Aligned_cols=93  Identities=27%  Similarity=0.383  Sum_probs=67.6

Q ss_pred             CCeEEecCceeeecCCCcEEEEEEeeecccc-eeEEeeccceeEec-ccceEEEEeccccceEEEEEEEccCCCCC-Cee
Q psy4613           1 HPVIHVPNQLVGAPIDTDVTLECYVEAYPKS-INYWVRDQGDMVIS-SERYEVESISRSIFDFKMRLTIKKITKYD-LGS   77 (96)
Q Consensus         1 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~-~~~w~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~d-~g~   77 (96)
                      ||.+.. +....+..|..+.|.|.+.+.|.| .+.|.+++..+... ..++.+...... ....+.|.|..++..| .|.
T Consensus         2 pp~i~~-~~~~~~~~G~~v~L~C~~~g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~~~-~~~~s~L~I~~v~~~d~~G~   79 (98)
T cd05758           2 PPIITS-EATQYAILGDKGRVECFIFSTPPPDRIVWTWKENELESGSSGRYTVETDPSP-GGVLSTLTISNTQESDFQTS   79 (98)
T ss_pred             CCeEcC-CCcEEEeCCCcEEEEEEEcccCCCCEeEEEECCEEccCCCCCCEEEEEecCC-CceEEEEEECCcccccccee
Confidence            455644 445668999999999999999999 59999886554322 234544432111 2234679999999855 899


Q ss_pred             EEEEEecCCCceEEEEEe
Q psy4613          78 YKCIAKNSLGEVESSIRL   95 (96)
Q Consensus        78 y~c~~~~~~g~~~~~~~l   95 (96)
                      |.|.+.|..|.....+.|
T Consensus        80 Y~C~A~N~~G~~~~~~~L   97 (98)
T cd05758          80 YNCTAWNSFGSGTAIISL   97 (98)
T ss_pred             EEEEEEcCCCcccEEEEe
Confidence            999999999998887766

Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor

Probab=99.70  E-value=1.8e-15  Score=68.33  Aligned_cols=80  Identities=18%  Similarity=0.433  Sum_probs=60.1

Q ss_pred             eeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCceE
Q psy4613          11 VGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVE   90 (96)
Q Consensus        11 ~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~~   90 (96)
                      +.+..|+.+.|.|.+.+.|.|.+.|++++..+.. ..+.......    .....|.|..+...|.|.|.|.+.|..|...
T Consensus         4 ~~v~~G~~~~L~C~~~g~P~p~i~W~k~g~~l~~-~~~~~~~~~~----~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~   78 (85)
T cd05857           4 HAVPAANTVKFRCPAAGNPTPTMRWLKNGKEFKQ-EHRIGGYKVR----NQHWSLIMESVVPSDKGNYTCVVENEYGSIN   78 (85)
T ss_pred             EEcCCCCEEEEEEEcCCCCCCEEEEEECCEECCC-CCceeeeEEe----CCceEEEEccCCcccCEEEEEEEEeCCCEEE
Confidence            4578899999999999999999999998765532 1111100000    0235688999999999999999999999988


Q ss_pred             EEEEe
Q psy4613          91 SSIRL   95 (96)
Q Consensus        91 ~~~~l   95 (96)
                      ..+.|
T Consensus        79 ~~~~l   83 (85)
T cd05857          79 HTYHL   83 (85)
T ss_pred             EEEEE
Confidence            87765

Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.

>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2)

Probab=99.69  E-value=2.8e-15  Score=68.65  Aligned_cols=85  Identities=26%  Similarity=0.316  Sum_probs=65.1

Q ss_pred             ecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecC
Q psy4613           6 VPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNS   85 (96)
Q Consensus         6 ~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~   85 (96)
                      ..+..+.+..|+.+.|.|.+.+.|.|.+.|++++..+. ...++......  .  ....|.|..++..|+|.|.|.+.|.
T Consensus         6 ~~p~~v~v~eG~~v~L~C~v~g~P~p~i~W~k~~~~~~-~~~~~~~~~~~--~--~~~~L~I~~~~~~D~G~Y~C~a~N~   80 (92)
T cd05891           6 GLPDVVTIMEGKTLNLTCTVFGNPDPEVIWFKNDQDIE-LSEHYSVKLEQ--G--KYASLTIKGVTSEDSGKYSINVKNK   80 (92)
T ss_pred             cCCCcEEEcCCCEEEEEEEEEEeCCCeEEEEECCEECC-CCCCEEEEEcC--C--CEEEEEECCCChhhCEEEEEEEEeC
Confidence            45567788999999999999999999999999876543 22333322111  1  1246999999999999999999999


Q ss_pred             CCceEEEEEe
Q psy4613          86 LGEVESSIRL   95 (96)
Q Consensus        86 ~g~~~~~~~l   95 (96)
                      .|.....+.|
T Consensus        81 ~G~~~~~~~v   90 (92)
T cd05891          81 YGGETVDVTV   90 (92)
T ss_pred             CCceeeEEEE
Confidence            9998877654

Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.

>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins

Probab=99.69  E-value=4.1e-15  Score=65.56  Aligned_cols=71  Identities=28%  Similarity=0.429  Sum_probs=56.0

Q ss_pred             EEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCceEEEEEe
Q psy4613          19 VTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL   95 (96)
Q Consensus        19 ~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~~~~~~l   95 (96)
                      +.|.|.+.|.|.|.+.|++++..+. ...+..+....     ....|.|.++...|.|.|.|.+.|..|.....+.|
T Consensus         2 ~~l~c~~~G~P~p~v~W~k~g~~l~-~~~~~~~~~~~-----~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l   72 (74)
T cd05748           2 VRLEVPISGRPTPTVTWSKDGKPLK-LSGRVQIETTA-----SSTSLVIKNAERSDSGKYTLTLKNPAGEKSATINV   72 (74)
T ss_pred             EEEEeeEeeeCCCeEEEEECCEEcC-CCCeEEEEECC-----CeEEEEECCCCcCcCEEEEEEEECCCccEEEEEEE
Confidence            6789999999999999999876542 23343332211     24789999999999999999999999998887765

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-

>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.69  E-value=2e-15  Score=66.03  Aligned_cols=69  Identities=32%  Similarity=0.629  Sum_probs=54.1

Q ss_pred             cEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCceEEEEEe
Q psy4613          18 DVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL   95 (96)
Q Consensus        18 ~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~~~~~~l   95 (96)
                      .+.|.|.+.|.|.|.+.|++++..+. ...++....        ...+.|.+++..|.|.|.|.+.|..|.......|
T Consensus         1 ~v~l~C~~~G~P~p~v~W~k~g~~~~-~~~~~~~~~--------~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L   69 (71)
T cd05723           1 DVIFECEVTGKPTPTVKWVKNGDMVI-PSDYFKIVK--------EHNLQVLGLVKSDEGFYQCIAENDVGNVQASAQL   69 (71)
T ss_pred             CEEEEEEEEEeCCCEEEEEECCeECC-CCCCEEEEe--------cCCEEEEcCCcccCEEEEEEEEcCCCEEEEEEEE
Confidence            37899999999999999999876543 233333322        2357788999999999999999999998888766

Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=99.68  E-value=1.8e-15  Score=69.08  Aligned_cols=81  Identities=27%  Similarity=0.445  Sum_probs=61.2

Q ss_pred             CCeEE--ecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeE
Q psy4613           1 HPVIH--VPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSY   78 (96)
Q Consensus         1 ~p~~~--~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y   78 (96)
                      +|.+.  ..+..+.+..|+.+.|.|.+.+. .|.+.|++++..+.  ..+.....       ....|.|.+++..|.|.|
T Consensus         1 ~p~~~~~~~~~~~~v~~g~~v~l~C~a~g~-~p~i~W~kng~~l~--~~~~~~~~-------~~~~L~I~~v~~~D~G~Y   70 (91)
T cd05740           1 KPVINSNNSVGNQPPEDNQPVTLTCEAEGQ-ATYIWWVNNGSLLV--PPRLQLSN-------DNRTLTFNNVTRSDTGHY   70 (91)
T ss_pred             CCEeecccccCccccccCCcEEEEEEeCCC-CCEEEEEECCEECC--CCCEEEeC-------CCCEEEECcCChhhCEEE
Confidence            36663  23455678899999999999998 99999999865543  23332221       225799999999999999


Q ss_pred             EEEEecCCCceEE
Q psy4613          79 KCIAKNSLGEVES   91 (96)
Q Consensus        79 ~c~~~~~~g~~~~   91 (96)
                      .|.+.|..|....
T Consensus        71 ~C~a~N~~G~~~S   83 (91)
T cd05740          71 QCEASNEVSNMTS   83 (91)
T ss_pred             EEEEEcCCCCEEe
Confidence            9999999997544

Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the

>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

Probab=99.68  E-value=1.5e-15  Score=67.29  Aligned_cols=73  Identities=16%  Similarity=0.198  Sum_probs=55.8

Q ss_pred             CCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCceEEEEEe
Q psy4613          16 DTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL   95 (96)
Q Consensus        16 g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~~~~~~l   95 (96)
                      |+.+.|.|.+.+.|.|.+.|++++..+...........       ....|.|.+++..|.|.|.|.+.|..|...+.+.|
T Consensus         1 G~~~~l~C~~~g~P~p~i~W~~~g~~~~~~~~~~~~~~-------~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l   73 (76)
T cd04978           1 GETGRLDCEAEGIPQPTITWRLNGVPIEELPPDPRRRV-------DGGTLILSNVQPNDTAVYQCNASNVHGYLLANAFV   73 (76)
T ss_pred             CCeEEEEEEceeeCCCEEEEEECCEECCCCCCcceEEc-------cCCEEEECCCChhhCEEEEEEEEccCCeEEEeEEE
Confidence            67899999999999999999988655432211111111       23678999999999999999999999988877765

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

Probab=99.68  E-value=2.8e-15  Score=67.21  Aligned_cols=78  Identities=24%  Similarity=0.525  Sum_probs=60.0

Q ss_pred             eeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCce
Q psy4613          10 LVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEV   89 (96)
Q Consensus        10 ~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~   89 (96)
                      .+.+..|+.+.|.|.+.+.|.|.+.|++++..+... .......       ....|.|.++...|.|.|.|.+.|..|..
T Consensus         3 ~~~~~~G~~v~L~C~~~g~p~p~i~W~k~~~~~~~~-~~~~~~~-------~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~   74 (82)
T cd05856           3 VIARPVGSSVRLKCVASGNPRPDITWLKDNKPLTPT-EIGESRK-------KKWTLSLKNLKPEDSGKYTCHVSNRAGEI   74 (82)
T ss_pred             ceeccCCCeEEEEEEeeEeCCCcEEEEECCcCCcCC-ccceecC-------ceEEEEEccCChhhCEEEEEEEEcCCccE
Confidence            345778999999999999999999999986554321 1111110       23679999999999999999999999988


Q ss_pred             EEEEEe
Q psy4613          90 ESSIRL   95 (96)
Q Consensus        90 ~~~~~l   95 (96)
                      ...+.|
T Consensus        75 ~~~~~v   80 (82)
T cd05856          75 NATYKV   80 (82)
T ss_pred             EEEEEE
Confidence            877765

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.

>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin

Probab=99.68  E-value=1.8e-15  Score=66.58  Aligned_cols=71  Identities=32%  Similarity=0.465  Sum_probs=57.0

Q ss_pred             CCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCceEEEEEe
Q psy4613          16 DTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL   95 (96)
Q Consensus        16 g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~~~~~~l   95 (96)
                      |+.+.|.|.+.+.|.|.+.|++++..+. ...++...        ....|.|.++...|.|.|.|.+.|..|....++.|
T Consensus         1 G~~v~L~C~~~g~P~p~v~W~k~~~~~~-~~~~~~~~--------~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l   71 (73)
T cd04969           1 GGDVIIECKPKAAPKPTISWSKGTELLT-NSSRICIW--------PDGSLEILNVTKSDEGKYTCFAENFFGKANSTGSL   71 (73)
T ss_pred             CCeEEEEEeeeEcCCCEEEEEECCEEcc-cCCCEEEC--------CCCeEEEccCChhHCEEEEEEEECCCCceEEEEEE
Confidence            6789999999999999999999865543 33344322        12469999999999999999999999998887765

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2

Probab=99.66  E-value=4.2e-15  Score=66.16  Aligned_cols=72  Identities=28%  Similarity=0.394  Sum_probs=54.5

Q ss_pred             CCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCceEEEE
Q psy4613          16 DTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVESSI   93 (96)
Q Consensus        16 g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~~~~~   93 (96)
                      |+.+.|.|.+.+.|.|.+.|++++..+. ...++......     ....|.|.+++..|.|.|.|.+.|..|......
T Consensus         1 G~~v~l~C~~~g~P~p~v~W~~~~~~~~-~~~~~~~~~~~-----~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~   72 (78)
T cd05743           1 GETVEFTCVATGVPTPIINWRLNWGHVP-DSARVSITSEG-----GYGTLTIRDVKESDQGAYTCEAINTRGMVFGIP   72 (78)
T ss_pred             CCEEEEEEEEEEecCCEEEEEECCeECC-CCCCEEEEECC-----CEEEEEECCCChHHCEEEEEEEEecCCEEEecc
Confidence            6789999999999999999998765442 22333322211     246799999999999999999999999765543

Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.

>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.66  E-value=1.5e-15  Score=66.08  Aligned_cols=68  Identities=25%  Similarity=0.528  Sum_probs=53.7

Q ss_pred             EEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCceEEEEEe
Q psy4613          19 VTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL   95 (96)
Q Consensus        19 ~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~~~~~~l   95 (96)
                      +.|.|.+.+.|.|.+.|++++..+. ...++...        ....|.|.++...|.|.|.|.+.|..|....++.|
T Consensus         1 v~L~C~~~g~P~p~i~W~k~g~~~~-~~~~~~~~--------~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L   68 (69)
T cd05746           1 VQIPCSAQGDPEPTITWNKDGVQVT-ESGKFHIS--------PEGYLAIRDVGVADQGRYECVARNTIGYASVSMVL   68 (69)
T ss_pred             CEeEecceEeCCCEEEEEECCEECC-CCCCEEEC--------CCCEEEECcCChhhCEEEEEEEECCCCcEEEEEEe
Confidence            4689999999999999999865442 23333322        13579999999999999999999999998887765

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.

>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1

Probab=99.66  E-value=5e-15  Score=67.89  Aligned_cols=82  Identities=28%  Similarity=0.458  Sum_probs=58.1

Q ss_pred             CCeEEecCceeeecC---CCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCC-CCCCe
Q psy4613           1 HPVIHVPNQLVGAPI---DTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKIT-KYDLG   76 (96)
Q Consensus         1 ~p~~~~~~~~~~~~~---g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~g   76 (96)
                      +|.+...+.......   +..+.|.|.+.|.|.|.+.|++++..+.....++..         ....|.|..+. ..|.|
T Consensus         1 ~P~f~~~P~~~~~~~~~~~~~v~l~C~a~G~P~P~i~W~k~~~~i~~~~~~~~~---------~~g~L~I~~~~~~~D~G   71 (93)
T cd05849           1 GPVFEEQPIDTIYPEESTEGKVSVNCRARANPFPIYKWRKNNLDIDLTNDRYSM---------VGGNLVINNPDKYKDAG   71 (93)
T ss_pred             CCEEEECCCCEEecCCccCCeEEEeCcCccCCCCEEEEEECCEEccCCCCeEEE---------ECCEEEECcCCcCCCCE
Confidence            355655555554444   347999999999999999999987654322233322         12568888875 68999


Q ss_pred             eEEEEEecCCCceEE
Q psy4613          77 SYKCIAKNSLGEVES   91 (96)
Q Consensus        77 ~y~c~~~~~~g~~~~   91 (96)
                      .|.|.+.|..|....
T Consensus        72 ~Y~C~A~N~~G~~~s   86 (93)
T cd05849          72 RYVCIVSNIYGKVRS   86 (93)
T ss_pred             EEEEEEEeCcceEEE
Confidence            999999999997644

Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB

Probab=99.66  E-value=7.4e-15  Score=65.22  Aligned_cols=75  Identities=21%  Similarity=0.272  Sum_probs=53.3

Q ss_pred             EEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCceEEEEEe
Q psy4613          20 TLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL   95 (96)
Q Consensus        20 ~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~~~~~~l   95 (96)
                      .|.|.+.|.|.|.+.|++++..+. ...+................|.|..+...|.|.|.|.+.|..|.....+.+
T Consensus         2 ~i~~~v~G~P~Pti~W~kng~~l~-~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~~~~   76 (79)
T cd05855           2 CIPFTVKGNPKPTLQWFHEGAILN-ESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKNVSA   76 (79)
T ss_pred             eEEEEEeEeCCCceEEEECCEECC-CCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccceEEEe
Confidence            367899999999999999976653 222211110000000124679999999999999999999999998877765

TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.

>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

Probab=99.66  E-value=1.4e-14  Score=67.09  Aligned_cols=91  Identities=24%  Similarity=0.322  Sum_probs=60.9

Q ss_pred             CCeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecc--cceEEEEeccccceEEEEEEE--ccCCCCCCe
Q psy4613           1 HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISS--ERYEVESISRSIFDFKMRLTI--KKITKYDLG   76 (96)
Q Consensus         1 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~i--~~~~~~d~g   76 (96)
                      +|.+...+....+..|+.+.|.|.+.+.|.|.+.|++++..+....  ......... +.  ....+.+  ..+...|.|
T Consensus         1 ~P~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~-~~--~~~~~~i~~~~~~~~D~G   77 (100)
T cd07693           1 PPRIVEHPSDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLP-SG--SLFFLRVVHGRKGRSDEG   77 (100)
T ss_pred             CCeEEecCceeEEcCCCeEEEEeeCCcCCCCEEEEEECCEECccccCCCCcceEEec-CC--cEEEEEeeccCCCcCcCE
Confidence            5788888888889999999999999999999999999875543210  011110000 01  1112222  234689999


Q ss_pred             eEEEEEecCCCc-eEEEEE
Q psy4613          77 SYKCIAKNSLGE-VESSIR   94 (96)
Q Consensus        77 ~y~c~~~~~~g~-~~~~~~   94 (96)
                      .|.|.+.|..|. ......
T Consensus        78 ~Y~C~a~N~~G~~~s~~~~   96 (100)
T cd07693          78 VYVCVAHNSLGEAVSRNAS   96 (100)
T ss_pred             EEEEEEEccccceecceEE
Confidence            999999999997 444433

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res

>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3)

Probab=99.66  E-value=2.8e-15  Score=64.69  Aligned_cols=61  Identities=30%  Similarity=0.383  Sum_probs=48.9

Q ss_pred             EEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCceEEEE
Q psy4613          19 VTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVESSI   93 (96)
Q Consensus        19 ~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~~~~~   93 (96)
                      +.|.|.+.+.|.|.+.|++++..+..   +.           ....|.|.++...|.|.|.|.+.|..|......
T Consensus         1 ~~l~c~v~g~P~P~v~W~kdg~~l~~---~~-----------~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~   61 (67)
T cd05863           1 VKLPVKVAAYPPPEFQWYKDGKLISG---KH-----------SQHSLQIKDVTEASAGTYTLVLWNSAAGLEKRI   61 (67)
T ss_pred             CEEEEEEEEeCCCEEEEEECCEECcc---cC-----------CcCEEEECCCCHHHCEEEEEEEEECCccEEEEE
Confidence            36899999999999999998755421   10           235799999999999999999999999655444

Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.

>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4

Probab=99.65  E-value=2.8e-15  Score=66.55  Aligned_cols=65  Identities=32%  Similarity=0.547  Sum_probs=49.3

Q ss_pred             EEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCceE
Q psy4613          19 VTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVE   90 (96)
Q Consensus        19 ~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~~   90 (96)
                      +.|.|.+.+.|.|.+.|++++..+.....++....       ....|.|.++...|.|.|.|.+.|..|...
T Consensus         1 v~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~-------~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~   65 (77)
T cd05760           1 VTLRCHIDGHPRPTYQWFRDGTPLSDGQGNYSVSS-------KERTLTLRSAGPDDSGLYYCCAHNAFGSVC   65 (77)
T ss_pred             CEEEEEeeecCCCcEEEEECCEECCCCCccEEEeC-------CCCEEEEeeCCcccCEEEEEEEEeCCCeEe
Confidence            47899999999999999998765432222222221       225789999999999999999999999653

Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s

>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.65  E-value=7.6e-15  Score=64.69  Aligned_cols=72  Identities=31%  Similarity=0.483  Sum_probs=55.2

Q ss_pred             CCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCceEEEEEe
Q psy4613          16 DTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL   95 (96)
Q Consensus        16 g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~~~~~~l   95 (96)
                      |+.+.|.|.+.+.|.|.+.|.+.+........+....        ....|.|..+...|.|.|.|.+.|..|.....+.|
T Consensus         1 G~~~~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~--------~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l   72 (74)
T cd05764           1 GQRATLRCKARGDPEPAIHWISPDGKLISNSSRTLVY--------DNGTLDILITTVKDTGSFTCIASNAAGEATATVEL   72 (74)
T ss_pred             CCeEEEEEEccCcCCCEEEEEeCCCEEecCCCeEEEe--------cCCEEEEEECChhhCEEEEEEEECCCCeEEEEEEE
Confidence            6789999999999999999997544443332332221        12568889999999999999999999988877765

Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.64  E-value=2.4e-15  Score=65.83  Aligned_cols=68  Identities=26%  Similarity=0.439  Sum_probs=52.6

Q ss_pred             EEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCceEEEEEe
Q psy4613          19 VTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL   95 (96)
Q Consensus        19 ~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~~~~~~l   95 (96)
                      +.|.|.+.|.|.|.+.|++++..+..  .+.....       ....|.|.++...|.|.|.|.+.|..|.....+.|
T Consensus         1 ~~L~C~~~G~P~P~v~W~k~~~~~~~--~~~~~~~-------~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l   68 (71)
T cd05876           1 LVLECIAEGLPTPEVHWDRIDGPLSP--NRTKKLN-------NNKTLQLDNVLESDDGEYVCTAENSEGSARHHYTV   68 (71)
T ss_pred             CEEEEEeeEecCCeEEEEECCcCCCC--CceeEEc-------CCCEEEEcccCHHhCEEEEEEEEcCCCeEEEEEEE
Confidence            46899999999999999998654431  1111111       23679999999999999999999999998877665

Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5

Probab=99.64  E-value=3.6e-14  Score=65.22  Aligned_cols=82  Identities=26%  Similarity=0.431  Sum_probs=57.4

Q ss_pred             CeEEecCceeeec---CCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCC-CCCCee
Q psy4613           2 PVIHVPNQLVGAP---IDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKIT-KYDLGS   77 (96)
Q Consensus         2 p~~~~~~~~~~~~---~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~g~   77 (96)
                      |.+...+..+.+.   .|+.+.|.|.+.|.|.|.+.|++++..+.. ........       ....|.|..+. ..|.|.
T Consensus         2 P~f~~~p~~~~~~~~~~g~~v~l~C~~~G~P~P~i~W~k~g~~l~~-~~~~~~~~-------~~g~L~i~~~~~~~D~G~   73 (94)
T cd05848           2 PVFVQEPDDAIFPTDSDEKKVILNCEARGNPVPTYRWLRNGTEIDT-ESDYRYSL-------IDGNLIISNPSEVKDSGR   73 (94)
T ss_pred             CeeEECCCcEEccCCCCCCEEEEEEEeeecCCCEEEEEECCeECcc-CCCceEEe-------eCCeEEEccCCccCcCEE
Confidence            5555555554443   468999999999999999999998765532 12222211       12467788774 689999


Q ss_pred             EEEEEecCCCceEE
Q psy4613          78 YKCIAKNSLGEVES   91 (96)
Q Consensus        78 y~c~~~~~~g~~~~   91 (96)
                      |.|.+.|..|....
T Consensus        74 Y~C~A~N~~G~~~S   87 (94)
T cd05848          74 YQCLATNSIGSILS   87 (94)
T ss_pred             EEEEEEcCCCeEEe
Confidence            99999999997643

Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.

>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.63  E-value=1.6e-14  Score=62.83  Aligned_cols=68  Identities=22%  Similarity=0.469  Sum_probs=51.3

Q ss_pred             CCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCceEEEEEe
Q psy4613          16 DTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL   95 (96)
Q Consensus        16 g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~~~~~~l   95 (96)
                      |+.+.|.|.+.|.|.|.+.|++++..+. ...+...         ....|.|.++.  |.|.|.|.+.|..|....+..|
T Consensus         1 G~~v~L~C~a~G~P~P~v~W~k~g~~l~-~~~~~~~---------~~~~L~i~~~~--d~G~Y~C~A~N~~G~~~~~a~l   68 (69)
T cd05739           1 GGSVNLTCVAVGAPMPYVKWMKGGEELT-KEDEMPV---------GRNVLELTNIY--ESANYTCVAISSLGMIEATAQV   68 (69)
T ss_pred             CCeEEEEEEeeecCCCEEEEEECCEECC-Cccceec---------CccEEEEeccc--cCeeEEEEEEeCCCEEEEEEEE
Confidence            5789999999999999999999875542 2222211         12457777764  7899999999999998877765

Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).

>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.63  E-value=7e-15  Score=67.09  Aligned_cols=72  Identities=26%  Similarity=0.524  Sum_probs=55.0

Q ss_pred             CCcEEEEEEeeecccceeEEeeccceeEe-------cccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCc
Q psy4613          16 DTDVTLECYVEAYPKSINYWVRDQGDMVI-------SSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGE   88 (96)
Q Consensus        16 g~~~~l~c~~~~~~~~~~~w~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~   88 (96)
                      |+.+.|.|.+.+.|.|.+.|++++.....       ...++...        ....|.|.+++..|+|.|.|.+.|..|.
T Consensus         1 G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~--------~~~~L~I~~v~~~D~G~Y~C~a~N~~G~   72 (90)
T cd05726           1 GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVS--------QTGDLTITNVQRSDVGYYICQTLNVAGS   72 (90)
T ss_pred             CCEEEEEEECCccCCCEEEEEeCCCcceeecccCCCCCCeEEEC--------CCCeEEEeeCChhhCEEEEEEEEcCCCc
Confidence            67899999999999999999988654321       11222221        1246999999999999999999999998


Q ss_pred             eEEEEEe
Q psy4613          89 VESSIRL   95 (96)
Q Consensus        89 ~~~~~~l   95 (96)
                      ....+.|
T Consensus        73 ~~~~~~l   79 (90)
T cd05726          73 ILTKAYL   79 (90)
T ss_pred             eEEEEEE
Confidence            8777655

Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins

Probab=99.63  E-value=1.1e-13  Score=63.39  Aligned_cols=86  Identities=22%  Similarity=0.364  Sum_probs=59.7

Q ss_pred             EecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEec
Q psy4613           5 HVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKN   84 (96)
Q Consensus         5 ~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~   84 (96)
                      ...+....+..|+.+.|.|.+.+.| +.+.|++.+........+......    ......|.|.+++..|.|.|.|.+.|
T Consensus         4 ~v~p~~~~v~~G~~~~l~C~~~G~p-~~i~W~~~~~~~~~~~~~~~~~~~----~~~~~~L~I~~v~~~D~G~Y~C~A~N   78 (92)
T cd04977           4 DIVPSQGEISVGESKFFLCQVIGEP-KDISWFSPNGEKLVTQQQISVVQN----DDVRSTLTIYNANIEDAGIYKCVATD   78 (92)
T ss_pred             EEecCcEEECCCCeEEEEEEeEeeC-CeEEEECCCCCEeccCCCEEEEeC----CCCEEEEEEecCCcccCEEEEEEEEc
Confidence            4445557789999999999999986 489999743433322233322211    01346899999999999999999999


Q ss_pred             CCCc-eEEEEEe
Q psy4613          85 SLGE-VESSIRL   95 (96)
Q Consensus        85 ~~g~-~~~~~~l   95 (96)
                      ..|. ...+..|
T Consensus        79 ~~g~~~~~sv~l   90 (92)
T cd04977          79 AKGTESEATVNL   90 (92)
T ss_pred             CCCCcceeEEEE
Confidence            8654 4555544

Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s

>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2

Probab=99.63  E-value=7.9e-14  Score=64.08  Aligned_cols=81  Identities=30%  Similarity=0.466  Sum_probs=58.5

Q ss_pred             CeEEecCceeeecCC---CcEEEEEEeeecccceeEEeeccceeEec-ccceEEEEeccccceEEEEEEEccCC-CCCCe
Q psy4613           2 PVIHVPNQLVGAPID---TDVTLECYVEAYPKSINYWVRDQGDMVIS-SERYEVESISRSIFDFKMRLTIKKIT-KYDLG   76 (96)
Q Consensus         2 p~~~~~~~~~~~~~g---~~~~l~c~~~~~~~~~~~w~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~g   76 (96)
                      |.+...+.......|   ..+.|.|.+.+.|.|.+.|++++..+... ..++..         ....|.|.++. ..|.|
T Consensus         2 P~f~~~P~~~~~~~~~~g~~v~l~C~a~g~P~p~i~W~~~g~~l~~~~~~~~~~---------~~g~L~I~~~~~~~D~G   72 (94)
T cd05850           2 PVFEEQPSSLLFPEGSPEEKVTLGCRARASPPATYRWKMNGTEIKFAPESRYTL---------VAGNLVINNPQKARDAG   72 (94)
T ss_pred             CeeEECCCCEEecCCCCCCeEEEEeEceeCCCCEEEEEECCEECccCCCceEEE---------ECCeEEEccCCccCcCE
Confidence            566666666655555   57999999999999999999987655322 122222         12467787755 58999


Q ss_pred             eEEEEEecCCCceEE
Q psy4613          77 SYKCIAKNSLGEVES   91 (96)
Q Consensus        77 ~y~c~~~~~~g~~~~   91 (96)
                      .|.|.+.|..|....
T Consensus        73 ~Y~C~A~N~~G~~~s   87 (94)
T cd05850          73 SYQCLAINRCGTVVS   87 (94)
T ss_pred             EEEEEEEcCcCcEEE
Confidence            999999999997654

Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.63  E-value=6.6e-15  Score=65.05  Aligned_cols=70  Identities=26%  Similarity=0.416  Sum_probs=51.5

Q ss_pred             EEEEEEeeecccceeEEeeccceeEe--cccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCceEEEEEe
Q psy4613          19 VTLECYVEAYPKSINYWVRDQGDMVI--SSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL   95 (96)
Q Consensus        19 ~~l~c~~~~~~~~~~~w~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~~~~~~l   95 (96)
                      +.|.|.+.|.|.|.+.|++++.....  ...++....       ....|.|.+++..|.|.|.|.+.|..|.......|
T Consensus         1 a~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~-------~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l   72 (75)
T cd05763           1 ARLECAATGHPTPQIAWQKDGGTDFPAARERRMHVMP-------EDDVFFIVDVKIEDTGVYSCTAQNTAGSISANATL   72 (75)
T ss_pred             CEeEeecccccCCEEEEEeCCCccCCcccccceEEec-------CCCEEEEeeCCcccCEEEEEEEEcCCCEEEeeEEE
Confidence            36899999999999999998653211  112222211       12468899999999999999999999987776654

Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.62  E-value=4.5e-14  Score=63.17  Aligned_cols=75  Identities=20%  Similarity=0.269  Sum_probs=53.5

Q ss_pred             EEEEEeeecccceeEEeeccceeEecccceEEEEecc--ccceEEEEEEEccCCCCCCeeEEEEEecCCCceEEEEEe
Q psy4613          20 TLECYVEAYPKSINYWVRDQGDMVISSERYEVESISR--SIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL   95 (96)
Q Consensus        20 ~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~~~~~~l   95 (96)
                      .|.|.+.|.|.|.+.|++++..+. ...+........  ........|.|.++...|.|.|.|.+.|..|.....+.+
T Consensus         2 ~i~~~v~G~P~P~v~W~k~g~~i~-~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~~   78 (81)
T cd04971           2 CIPFTVRGNPKPTLTWYHNGAVLN-ESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSKSISA   78 (81)
T ss_pred             eEEEEeEeeCCCcEEEEECCEECc-CCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeeeEEEe
Confidence            368999999999999999876654 222221111000  011134679999999999999999999999998877765

TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun

>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.62  E-value=2.7e-14  Score=63.70  Aligned_cols=76  Identities=17%  Similarity=0.290  Sum_probs=57.8

Q ss_pred             ceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCc
Q psy4613           9 QLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGE   88 (96)
Q Consensus         9 ~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~   88 (96)
                      ....+..|+.+.|.|.+.+. .+.+.|++++..+. ...++.+.         ...|.|..+...|+|.|.|.+.|..|.
T Consensus         2 ~~~~~~~G~~v~l~C~~~~~-~~~v~W~k~g~~l~-~~~~~~~~---------~~~L~I~~~~~~DsG~Y~C~a~n~~g~   70 (79)
T cd04973           2 ESYSAHPGDLLQLRCRLRDD-VQSINWTKDGVQLG-ENNRTRIT---------GEEVQIKDAVPRDSGLYACVTSSPSGS   70 (79)
T ss_pred             CcEEecCCCCEEEEEEecCC-CceEEEeeCCcCCC-CCceEEEe---------CCEEEECCCChhhCEEEEEEEeCCCCc
Confidence            34567899999999999885 56899999875553 22333332         246899999999999999999999887


Q ss_pred             eEEEEEe
Q psy4613          89 VESSIRL   95 (96)
Q Consensus        89 ~~~~~~l   95 (96)
                      ....+.|
T Consensus        71 ~~~~~~v   77 (79)
T cd04973          71 DTTYFSV   77 (79)
T ss_pred             ccEEEEE
Confidence            6665543

Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.

>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.62  E-value=1.4e-14  Score=63.04  Aligned_cols=67  Identities=33%  Similarity=0.584  Sum_probs=52.8

Q ss_pred             EEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCceEEEEEe
Q psy4613          19 VTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL   95 (96)
Q Consensus        19 ~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~~~~~~l   95 (96)
                      +.|.|.+.+.|.|.+.|++++..+.  ..++...        ....|.|.+++..|.|.|.|.+.|..|.......|
T Consensus         1 v~l~C~~~g~P~p~v~W~k~~~~~~--~~~~~~~--------~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l   67 (69)
T cd05725           1 VEFQCEVGGDPVPTVLWRKEDGELP--KGRAEIL--------DDKSLKIRNVTAGDEGSYTCEAENMVGKIEASASL   67 (69)
T ss_pred             CEEEEECccCCCCEEEEEECCccCC--CCcEEEe--------eCCEEEECcCChhHCEEEEEEEEcCCCcEEEEEEE
Confidence            4689999999999999999865442  2333332        12569999999999999999999999988877665

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.62  E-value=1.9e-14  Score=65.09  Aligned_cols=75  Identities=28%  Similarity=0.462  Sum_probs=57.5

Q ss_pred             CceeeecCCCcEEEEEEe-eecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCC
Q psy4613           8 NQLVGAPIDTDVTLECYV-EAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSL   86 (96)
Q Consensus         8 ~~~~~~~~g~~~~l~c~~-~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~   86 (96)
                      +....+..|+.+.|.|.+ .+.|.|.+.|++++..+.....+.....        ...|.|.++...|.|.|.|.+.|..
T Consensus         3 p~~~~~~~G~~v~l~C~~~~g~p~p~i~W~k~g~~~~~~~~~~~~~~--------~~~L~I~~~~~~D~G~Y~C~a~N~~   74 (86)
T cd05724           3 PSDTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLDNERVRIVD--------DGNLLIAEARKSDEGTYKCVATNMV   74 (86)
T ss_pred             CccEEEeCCCCEEEEEECCCCCCCCEEEEEECCEECCCCCCCEEEcc--------CCEEEEeECCcccCEEEEEEEEecc
Confidence            445677899999999997 6888999999998655432223332211        2569999999999999999999998


Q ss_pred             CceE
Q psy4613          87 GEVE   90 (96)
Q Consensus        87 g~~~   90 (96)
                      |...
T Consensus        75 G~~~   78 (86)
T cd05724          75 GERE   78 (86)
T ss_pred             Ccee
Confidence            8754

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago

>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)

Probab=99.62  E-value=1.7e-13  Score=63.16  Aligned_cols=93  Identities=29%  Similarity=0.406  Sum_probs=67.2

Q ss_pred             CCeEEecCceeeecCCCcEEEEEEeeecccc-eeEEeeccceeEec-ccceEEEEeccccceEEEEEEEccCCCCC-Cee
Q psy4613           1 HPVIHVPNQLVGAPIDTDVTLECYVEAYPKS-INYWVRDQGDMVIS-SERYEVESISRSIFDFKMRLTIKKITKYD-LGS   77 (96)
Q Consensus         1 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~-~~~w~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~d-~g~   77 (96)
                      ||.+ .......+..|+.+.|.|.+.+.|.| .+.|...+..+... ..++.+.... ...+..+.|.|.++...| .|.
T Consensus         2 pP~i-~~~~s~~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~-~~~g~~S~L~I~~~~~~d~~g~   79 (98)
T cd05898           2 PPII-SSEQVQYAVRGERGKVKCFIGSTPPPDRIAWAWKENVLESGTSERYTVERTS-TGSGVLSTLTINNIMEADFQTH   79 (98)
T ss_pred             CCEE-ecCceEEEeCCCcEEEEEEEccCCCCcEEEEEEccccccCCCCCCEEEEEEc-cCCCcEEEEEECCCccccCCcE
Confidence            4555 56667778899999999999888887 56787664433221 3455554421 222356889999998767 689


Q ss_pred             EEEEEecCCCceEEEEEe
Q psy4613          78 YKCIAKNSLGEVESSIRL   95 (96)
Q Consensus        78 y~c~~~~~~g~~~~~~~l   95 (96)
                      |.|.+.|.+|.....+.|
T Consensus        80 Y~C~a~N~~G~d~~~i~L   97 (98)
T cd05898          80 YNCTAWNSFGSGTAIIQL   97 (98)
T ss_pred             EEEEEEeCCccceEEEEe
Confidence            999999999998887776

Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.

>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.61  E-value=6.6e-15  Score=64.34  Aligned_cols=68  Identities=32%  Similarity=0.667  Sum_probs=52.1

Q ss_pred             EEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCceEEEEEe
Q psy4613          19 VTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL   95 (96)
Q Consensus        19 ~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~~~~~~l   95 (96)
                      +.|.|.+.+.|.|.+.|++++..+.  ..+.....       ....|.|.++...|.|.|.|.+.|..|.....+.|
T Consensus         1 v~l~C~~~g~P~p~v~W~k~~~~~~--~~~~~~~~-------~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l   68 (71)
T cd05731           1 LLLECIAEGLPTPEISWIKIGGELP--ADRTKFEN-------FNKTLKIDNVSEEDDGEYRCTASNSLGSARHTISV   68 (71)
T ss_pred             CEEEEEeeEecCCeEEEEECCeECC--CCceeEec-------CCCEEEECCCCHHHCEEEEEEEEeCCceEEEEEEE
Confidence            4689999999999999999865432  11211111       23579999999999999999999999988777765

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.

>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR)

Probab=99.61  E-value=1.2e-14  Score=63.54  Aligned_cols=65  Identities=28%  Similarity=0.433  Sum_probs=49.9

Q ss_pred             EEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCceEEEE
Q psy4613          19 VTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVESSI   93 (96)
Q Consensus        19 ~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~~~~~   93 (96)
                      +.|.|.+.+.|.|.+.|++++..+. ...+..  .       ....|.|.++...|+|.|.|.+.|..|.....+
T Consensus         1 ~~l~c~v~g~P~p~v~W~k~g~~l~-~~~~~~--~-------~~~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~   65 (71)
T cd04976           1 VRLPVKVKAYPPPEIQWYKNGKLIS-EKNRTK--K-------SGHSLTIKDVTEEDAGNYTVVLTNKQAKLEKRL   65 (71)
T ss_pred             CEEEeEEEEeCCCEEEEEECCEECC-CCCEEE--c-------CCCEEEECcCCHHHCEEEEEEEEcCCccEEEEE
Confidence            3689999999999999999865543 222221  1       235799999999999999999999998765544

Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa

>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins

Probab=99.61  E-value=2.6e-14  Score=64.56  Aligned_cols=79  Identities=28%  Similarity=0.429  Sum_probs=62.6

Q ss_pred             ecCceeeecCCCcEEEEEEeee-cccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEec
Q psy4613           6 VPNQLVGAPIDTDVTLECYVEA-YPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKN   84 (96)
Q Consensus         6 ~~~~~~~~~~g~~~~l~c~~~~-~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~   84 (96)
                      .++....+..|+.++|.|.+.+ .+.+.+.|++++..+. .  +.  ..       ....|.|.+++..|.|.|.|.+.|
T Consensus         6 ~~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~-~--~~--~~-------~~~~L~I~~v~~~DsG~Y~C~a~n   73 (85)
T cd05754           6 EEPRSQEVRPGADVSFICRAKSKSPAYTLVWTRVGGGLP-S--RA--MD-------FNGILTIRNVQLSDAGTYVCTGSN   73 (85)
T ss_pred             cCCCceEEcCCCCEEEEEEcCCCCCCcEEEEEECCCcCC-C--cc--cc-------cCCEEEECCCCHHHCEEEEEEEec
Confidence            4556677899999999999875 6778999998864421 1  11  11       235799999999999999999999


Q ss_pred             CCCceEEEEEeC
Q psy4613          85 SLGEVESSIRLY   96 (96)
Q Consensus        85 ~~g~~~~~~~l~   96 (96)
                      ..|.......||
T Consensus        74 ~~g~~~~~~~l~   85 (85)
T cd05754          74 MLDTDEATATLY   85 (85)
T ss_pred             cCCeEeEEEEEC
Confidence            999999999887

Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.

>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=99.59  E-value=4.4e-14  Score=64.87  Aligned_cols=79  Identities=24%  Similarity=0.261  Sum_probs=59.1

Q ss_pred             eeeecCCCcEEEEEEeee-----cccceeEEeeccceeEecc-cceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEe
Q psy4613          10 LVGAPIDTDVTLECYVEA-----YPKSINYWVRDQGDMVISS-ERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAK   83 (96)
Q Consensus        10 ~~~~~~g~~~~l~c~~~~-----~~~~~~~w~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~   83 (96)
                      ...+..|+.+.|.|.+.+     .|.+.+.|++++....... ...+...       ....|.|..+...|+|.|.|.+.
T Consensus         8 ~~~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~~~~~~~~r~~~-------~~~~L~I~~~~~~DsG~Y~C~~~   80 (94)
T cd05756           8 KSYVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTPIPTEERSRMHQ-------QKDLLWFLPAALEDSGLYTCVVR   80 (94)
T ss_pred             EEEEecCCCeEEECCCCCcccccCCCceEEEEEcCCCCcccccccceeee-------cCCeEEEccCCcccCeEEEEEEc
Confidence            455778999999999988     6888999999875432111 1111111       12578999999999999999999


Q ss_pred             cCCCceEEEEEe
Q psy4613          84 NSLGEVESSIRL   95 (96)
Q Consensus        84 ~~~g~~~~~~~l   95 (96)
                      |..|.....+.|
T Consensus        81 N~~g~~~~~~~L   92 (94)
T cd05756          81 NSTYCMKVSISL   92 (94)
T ss_pred             CCCccEEEEEEE
Confidence            999988877655

Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2)

Probab=99.58  E-value=2.2e-14  Score=62.46  Aligned_cols=62  Identities=23%  Similarity=0.372  Sum_probs=48.0

Q ss_pred             EEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCceEE
Q psy4613          19 VTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVES   91 (96)
Q Consensus        19 ~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~~~   91 (96)
                      +.|.|.+.|.|.|.+.|++++..+. ...  ...        ....|.|.++...|.|.|.|.+.|..|....
T Consensus         1 ~~~~c~v~G~P~P~v~W~k~g~~l~-~~~--~~~--------~~~~L~I~~v~~~D~G~YtC~a~N~~G~~~~   62 (70)
T cd05864           1 VKIPVKYYGYPPPEVKWYKNGQLIV-LNH--TFK--------RGVHLTIYEVTEKDAGNYTVVLTNPITKEEQ   62 (70)
T ss_pred             CEEEeEEEEeCCCEEEEEECCEECC-CCC--EEc--------cCCEEEECcCCHHHCEEEEEEEEECCCceee
Confidence            3688999999999999999876553 211  111        1246899999999999999999999985543

Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2

Probab=99.58  E-value=2.5e-13  Score=61.32  Aligned_cols=75  Identities=20%  Similarity=0.338  Sum_probs=54.0

Q ss_pred             CcEEEEEEeeecccc--eeEEeeccceeEec--ccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCceEEE
Q psy4613          17 TDVTLECYVEAYPKS--INYWVRDQGDMVIS--SERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVESS   92 (96)
Q Consensus        17 ~~~~l~c~~~~~~~~--~~~w~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~~~~   92 (96)
                      +.+.|.|.+.+.|.|  .+.|++++..+...  ..++.....  .  ...+.|.|.+++..|.|.|.|.+.|..|.....
T Consensus         1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~~--~--~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~   76 (85)
T cd05854           1 ENLTLQCHASHDPTMDLTFTWSLDDFPIDLDKPNGHYRRMEV--K--ETIGDLVIVNAQLSHAGTYTCTAQTVVDSASAS   76 (85)
T ss_pred             CcEEEEEEEecCCCCCeEEEEEECCeEccccCCCCcEEEEEe--c--ceEeEEEEccCChhhCeEEEEEEecCCCCEEEE
Confidence            368899999999887  57899986554321  112211110  0  023689999999999999999999999998887


Q ss_pred             EEe
Q psy4613          93 IRL   95 (96)
Q Consensus        93 ~~l   95 (96)
                      +.|
T Consensus        77 ~~L   79 (85)
T cd05854          77 ATL   79 (85)
T ss_pred             EEE
Confidence            765

Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.58  E-value=8.2e-14  Score=63.56  Aligned_cols=80  Identities=21%  Similarity=0.333  Sum_probs=53.5

Q ss_pred             CCcEEEEEEeeecccceeEEeecc----ceeEecc-cceEEEEe-c-cccceEEEEEEEccCCCCCCeeEEEEEecCCCc
Q psy4613          16 DTDVTLECYVEAYPKSINYWVRDQ----GDMVISS-ERYEVESI-S-RSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGE   88 (96)
Q Consensus        16 g~~~~l~c~~~~~~~~~~~w~~~~----~~~~~~~-~~~~~~~~-~-~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~   88 (96)
                      |+.+.|.|.+.+.|.|.+.|++.+    ..+.... ........ . .........|.|.+++..|.|.|.|.+.|..|.
T Consensus         1 G~~v~l~C~v~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~   80 (90)
T cd04974           1 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNSIGP   80 (90)
T ss_pred             CCcEEEEEEEeCCCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeecccCc
Confidence            578999999999999999999853    1111111 11111110 0 000012346899999999999999999999998


Q ss_pred             eEEEEEe
Q psy4613          89 VESSIRL   95 (96)
Q Consensus        89 ~~~~~~l   95 (96)
                      ...+..|
T Consensus        81 ~~~sa~L   87 (90)
T cd04974          81 SHHSAWL   87 (90)
T ss_pred             ccCCEEE
Confidence            8776655

Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.

>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2)

Probab=99.58  E-value=1.2e-13  Score=62.99  Aligned_cols=80  Identities=21%  Similarity=0.274  Sum_probs=53.7

Q ss_pred             CCcEEEEEEeeecccceeEEeecc----ceeEecc-cceEEEEec--cccceEEEEEEEccCCCCCCeeEEEEEecCCCc
Q psy4613          16 DTDVTLECYVEAYPKSINYWVRDQ----GDMVISS-ERYEVESIS--RSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGE   88 (96)
Q Consensus        16 g~~~~l~c~~~~~~~~~~~w~~~~----~~~~~~~-~~~~~~~~~--~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~   88 (96)
                      |..+.|.|.+.+.|.|.+.|++..    ..+.... .........  .........|.|.+++..|+|.|.|.+.|..|.
T Consensus         1 G~~v~L~C~~~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~   80 (90)
T cd05858           1 GSTVEFVCKVYSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSIGI   80 (90)
T ss_pred             CCeEEEEEEEecCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCCCc
Confidence            678999999999999999999842    1111110 111111000  000001357999999999999999999999998


Q ss_pred             eEEEEEe
Q psy4613          89 VESSIRL   95 (96)
Q Consensus        89 ~~~~~~l   95 (96)
                      ......|
T Consensus        81 ~~~~a~L   87 (90)
T cd05858          81 SHHSAWL   87 (90)
T ss_pred             ccceEEE
Confidence            8777665

Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.

>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.56  E-value=1.6e-13  Score=61.33  Aligned_cols=76  Identities=20%  Similarity=0.357  Sum_probs=53.7

Q ss_pred             CCcEEEEEEeeecccceeEEeeccc---eeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCceEEE
Q psy4613          16 DTDVTLECYVEAYPKSINYWVRDQG---DMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVESS   92 (96)
Q Consensus        16 g~~~~l~c~~~~~~~~~~~w~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~~~~   92 (96)
                      |+.+.|.|.+.+.|.|.+.|++...   ............ ..   ......|.|.+++..|.|.|.|.+.|..|.....
T Consensus         1 G~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~-~~---~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~   76 (81)
T cd05765           1 GETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVRGN-VV---VTNIGQLVIYNAQPQDAGLYTCTARNSGGLLRAN   76 (81)
T ss_pred             CCcEEEEeeccccCCCcEEEEecCCCCcceeecCCcccCC-EE---EccccEEEEccCCcccCEEEEEEEecCCceEEEE
Confidence            6789999999999999999998632   111111110000 00   0012579999999999999999999999998887


Q ss_pred             EEe
Q psy4613          93 IRL   95 (96)
Q Consensus        93 ~~l   95 (96)
                      +.|
T Consensus        77 ~~l   79 (81)
T cd05765          77 FPL   79 (81)
T ss_pred             EEE
Confidence            765

Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.56  E-value=8.4e-14  Score=61.37  Aligned_cols=63  Identities=27%  Similarity=0.388  Sum_probs=48.0

Q ss_pred             EEEEEEeeecccceeEEeeccceeEe-cccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCce
Q psy4613          19 VTLECYVEAYPKSINYWVRDQGDMVI-SSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEV   89 (96)
Q Consensus        19 ~~l~c~~~~~~~~~~~w~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~   89 (96)
                      +.|.|.+.|.|.|.+.|++++..+.. ...++...        ....|.|.+++..|.|.|.|.+.|..|..
T Consensus         1 a~l~C~~~G~P~p~v~W~k~~~~~~~~~~~~~~~~--------~~g~L~i~~~~~~D~G~Y~C~a~N~~G~~   64 (74)
T cd05738           1 ATMLCAASGNPDPEITWFKDFLPVDTTSNGRIKQL--------RSGALQIENSEESDQGKYECVATNSAGTR   64 (74)
T ss_pred             CEEEEEEeEecCCEEEEEECCEECccCCCCCEEEc--------CCcEEEECCCChhhCEEEEEEEECCCCce
Confidence            46899999999999999998654431 12233221        12468999999999999999999999974

Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.

>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

Probab=99.56  E-value=5.1e-13  Score=60.13  Aligned_cols=80  Identities=21%  Similarity=0.451  Sum_probs=59.3

Q ss_pred             eeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCceE
Q psy4613          11 VGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVE   90 (96)
Q Consensus        11 ~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~~   90 (96)
                      +.+..|..+.|.|.+.+.|.+.+.|++++..+. ..........    ......|.|..+...|.|.|.|.+.+..|...
T Consensus         4 ~~~~~G~~~~l~C~~~~~p~~~v~W~k~~~~~~-~~~~~~~~~~----~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~~   78 (85)
T cd05729           4 HAVPAGSTVRLKCPASGNPRPTITWLKDGKPFK-KEHRIGGYKV----RKKKWTLILESVVPSDSGKYTCIVENKYGSIN   78 (85)
T ss_pred             eEecCCCcEEEEEEcCCCCCCeEEEEECCEECc-ccCceeEEEc----cCcEEEEEEeECCcccCEEEEEEEEECCceEE
Confidence            457789999999999998999999998865443 1111111110    01235688999999999999999999999888


Q ss_pred             EEEEe
Q psy4613          91 SSIRL   95 (96)
Q Consensus        91 ~~~~l   95 (96)
                      .++.|
T Consensus        79 ~~~~l   83 (85)
T cd05729          79 HTYKV   83 (85)
T ss_pred             EEEEE
Confidence            77765

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin

>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin

Probab=99.55  E-value=1.8e-13  Score=61.79  Aligned_cols=75  Identities=20%  Similarity=0.325  Sum_probs=53.1

Q ss_pred             CcEEEEEEeeecccc--eeEEeeccceeEeccc--ceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCceEEE
Q psy4613          17 TDVTLECYVEAYPKS--INYWVRDQGDMVISSE--RYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVESS   92 (96)
Q Consensus        17 ~~~~l~c~~~~~~~~--~~~w~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~~~~   92 (96)
                      +++.|.|.+.+.|.|  .+.|++++..+.....  ++......    ...+.|.|.+++..|+|.|.|.+.|..|.....
T Consensus         1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~~----~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~   76 (85)
T cd04970           1 ESITLQCHASHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGGK----DSNGDLMIRNAQLKHAGKYTCTAQTVVDSLSAS   76 (85)
T ss_pred             CcEEEEEEEecCCCCCeEEEEEECCeEeeccCCCccEEEEecc----cccceEEEccCCHHhCeeeEEEEecCCCcEEEE
Confidence            368899999998877  5689988655532221  11111000    023679999999999999999999999987777


Q ss_pred             EEe
Q psy4613          93 IRL   95 (96)
Q Consensus        93 ~~l   95 (96)
                      ..|
T Consensus        77 ~~l   79 (85)
T cd04970          77 ADL   79 (85)
T ss_pred             EEE
Confidence            655

Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins

Probab=99.55  E-value=3.9e-13  Score=60.59  Aligned_cols=79  Identities=18%  Similarity=0.203  Sum_probs=53.3

Q ss_pred             CCcEEEEEEeeec--ccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCceEEEE
Q psy4613          16 DTDVTLECYVEAY--PKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVESSI   93 (96)
Q Consensus        16 g~~~~l~c~~~~~--~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~~~~~   93 (96)
                      |+.+.|.|.+.+.  |.+.+.|...+...... ................+.|.|.+++..|+|.|.|.+.|..|....+.
T Consensus         1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~-~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~s~   79 (84)
T cd05742           1 GETLVLNCTVLTELNEGVDFQWTYPGKKRGRG-KSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQKEST   79 (84)
T ss_pred             CCeEEEEEEEEeCCCccEEEEEecCCcccCCc-eEeecccccccceEEEEEEEECCCChhhCEEEEEEEccCCCceEEEE
Confidence            6789999999998  78899998765433110 00000000001112457899999999999999999999988766655


Q ss_pred             Ee
Q psy4613          94 RL   95 (96)
Q Consensus        94 ~l   95 (96)
                      .+
T Consensus        80 ~v   81 (84)
T cd05742          80 KV   81 (84)
T ss_pred             EE
Confidence            43

Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF

>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs)

Probab=99.54  E-value=3.8e-13  Score=59.30  Aligned_cols=73  Identities=23%  Similarity=0.403  Sum_probs=51.9

Q ss_pred             EEEEEEeee-cccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCceEEEEE
Q psy4613          19 VTLECYVEA-YPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIR   94 (96)
Q Consensus        19 ~~l~c~~~~-~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~~~~~~   94 (96)
                      +.|.|.+.+ .|.|.+.|++++..+... .+........  ......|.|..++..|.|.|.|.+.|..|.....+.
T Consensus         1 ~~l~C~~~g~~P~p~~~W~k~g~~l~~~-~~~~~~~~~~--~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~   74 (75)
T cd05750           1 LVLKCEATSEYPSLRFKWFKDGKELNRK-NKPRNIKIRN--KKKNSELQINKAKLADSGEYTCVVENILGNDTVTAN   74 (75)
T ss_pred             CEEEEEccCCCCCceEEEEcCCeecccc-CCcceEEEEe--cCceEEEEEccCCcccCeEEEEEEEEcCCceeEEEe
Confidence            368999999 899999999986554321 2211100000  013467999999999999999999999998776654

Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv

>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1)

Probab=99.53  E-value=1.1e-13  Score=60.46  Aligned_cols=62  Identities=24%  Similarity=0.296  Sum_probs=46.3

Q ss_pred             EEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCceE
Q psy4613          20 TLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVE   90 (96)
Q Consensus        20 ~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~~   90 (96)
                      .|.|.+.|.|.|.+.|++++..+.....++.  .       ....|.|.++...|+|.|.|.+.+......
T Consensus         2 ~l~c~v~g~P~P~v~W~kdg~~l~~~~~~~~--~-------~~~~L~I~~v~~~D~G~YtC~a~~~~~~~~   63 (72)
T cd07702           2 RLTPKVKAFPAPEVIWLKDGLPAAEKCSRYH--V-------DGYSLVIKDVTEEDAGIYTILLGIKQYNLF   63 (72)
T ss_pred             eEEeeEEEcCCCeEEEEECCEECCCCCcEEE--e-------CCCEEEECcCCHHHCEEEEEEEEccccceE
Confidence            5889999999999999999755432112221  1       124699999999999999999999755443

Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs)

Probab=99.53  E-value=3.4e-13  Score=60.30  Aligned_cols=71  Identities=15%  Similarity=0.219  Sum_probs=53.4

Q ss_pred             cCceeeecCCCcEEEEEEeeecccc-eeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecC
Q psy4613           7 PNQLVGAPIDTDVTLECYVEAYPKS-INYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNS   85 (96)
Q Consensus         7 ~~~~~~~~~g~~~~l~c~~~~~~~~-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~   85 (96)
                      .+..+.+..|+.+.|.|.+.|.|.| .+.|++++..+..   ....         ..+.|.|..+  .|.|.|.|.+.|.
T Consensus         4 ~P~~~~v~~G~~v~l~C~a~G~P~P~~I~W~k~g~~l~~---~~~~---------~~s~L~i~~~--~d~g~Y~C~A~N~   69 (81)
T cd05749           4 EPEDLSVTANTPFNLTCQAVGPPEPVEILWWQGGSPLGD---PPAP---------SPSVLNVPGL--NETSKFSCEAHNA   69 (81)
T ss_pred             CCCceEEcCCCCEEEEEEeeeecCCeEEEEEECCEECCC---CCCC---------CCCEEEEccc--cCCeEEEEEEEec
Confidence            3456778999999999999999999 7999998765421   1110         1246777766  4679999999999


Q ss_pred             CCceEE
Q psy4613          86 LGEVES   91 (96)
Q Consensus        86 ~g~~~~   91 (96)
                      .|....
T Consensus        70 ~G~~~s   75 (81)
T cd05749          70 KGVTTS   75 (81)
T ss_pred             cCcEEe
Confidence            996553

Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c

>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins

Probab=99.53  E-value=2.5e-13  Score=60.09  Aligned_cols=71  Identities=28%  Similarity=0.439  Sum_probs=52.2

Q ss_pred             EEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCceEEEEEe
Q psy4613          19 VTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL   95 (96)
Q Consensus        19 ~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~~~~~~l   95 (96)
                      +.|.|.+.+.|.|.+.|++++..+. ...+.......     ....|.|.++...|.|.|.|.+.|..|.....+.|
T Consensus         1 ~~L~C~v~g~P~p~v~W~k~~~~l~-~~~~~~~~~~~-----~~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l   71 (76)
T cd05736           1 ASLRCHAEGIPLPRLTWLKNGMDIT-PKLSKQLTLIA-----NGSELHISNVRYEDTGAYTCIAKNEAGVDEDISSL   71 (76)
T ss_pred             CEeEeEeeecCCCEEEEEECCEECC-CCCCccEEEeC-----CCCEEEECcCCcccCEEEEEEEEcCCCCcceEEEE
Confidence            3688999999999999999865543 22111111111     12468999999999999999999999988777765

Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.

>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.52  E-value=9.9e-13  Score=60.54  Aligned_cols=76  Identities=28%  Similarity=0.385  Sum_probs=52.6

Q ss_pred             cCceeeecCCCcEEEEEEeeecccceeEEeeccceeEeccc-ceEEEEeccccceEEEEEEEccC-----CCCCCeeEEE
Q psy4613           7 PNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSE-RYEVESISRSIFDFKMRLTIKKI-----TKYDLGSYKC   80 (96)
Q Consensus         7 ~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~i~~~-----~~~d~g~y~c   80 (96)
                      .+....+..|+.+.|.|.+.+.|.|.+.|++++..+..... +.....        ...+.+..+     ...|.|.|.|
T Consensus         5 ~P~~~~~~~g~~v~l~C~v~g~P~p~i~W~k~g~~l~~~~~~~~~~~~--------~~~l~i~~v~~~~~~~~D~G~Y~C   76 (95)
T cd05722           5 EPSDIVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLVSDERRQQLP--------NGSLLITSVVHSKHNKPDEGFYQC   76 (95)
T ss_pred             CCCCeEEcCCCCEEEeeecccCCCCEEEEEECCeECccccCcceEEcc--------CCeEEEeeeeccCCCCCcCEEEEE
Confidence            34455677899999999999999999999998665432211 111111        123444443     5789999999


Q ss_pred             EEecC-CCceE
Q psy4613          81 IAKNS-LGEVE   90 (96)
Q Consensus        81 ~~~~~-~g~~~   90 (96)
                      .+.|. .|...
T Consensus        77 ~a~N~~~G~~~   87 (95)
T cd05722          77 VAQNDSLGSIV   87 (95)
T ss_pred             EEECCccCcEE
Confidence            99999 88753

Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd04967 Ig1_Contactin First Ig domain of contactin

Probab=99.52  E-value=1.8e-12  Score=59.23  Aligned_cols=81  Identities=26%  Similarity=0.439  Sum_probs=55.5

Q ss_pred             CeEEecCceeeec---CCCcEEEEEEeeecccceeEEeeccceeEe-cccceEEEEeccccceEEEEEEEccCC-CCCCe
Q psy4613           2 PVIHVPNQLVGAP---IDTDVTLECYVEAYPKSINYWVRDQGDMVI-SSERYEVESISRSIFDFKMRLTIKKIT-KYDLG   76 (96)
Q Consensus         2 p~~~~~~~~~~~~---~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~g   76 (96)
                      |.+...+......   .++.+.|.|.+.+.|.|.+.|++++..+.. ...++..         ....|.|.++. ..|.|
T Consensus         2 P~f~~~p~~~~~~~~~~~~~~~l~C~~~g~p~p~i~W~k~~~~l~~~~~~~~~~---------~~~~L~i~~~~~~~d~G   72 (91)
T cd04967           2 PVFEEQPDDTIFPEESDEGKVSLNCRARGSPPPTYRWLMNGTEIDDEPDSRYSL---------VGGNLVISNPSKAKDAG   72 (91)
T ss_pred             CeeEeCCCCEEccCCCCCCEEEEEEeeeEcCCCEEEEEECCEECCCCCCCCEEE---------ECCEEEEecCCccCCCE
Confidence            4555555444433   346799999999999999999998654421 1222221         12467787776 48999


Q ss_pred             eEEEEEecCCCceEE
Q psy4613          77 SYKCIAKNSLGEVES   91 (96)
Q Consensus        77 ~y~c~~~~~~g~~~~   91 (96)
                      .|.|.+.|..|....
T Consensus        73 ~Y~C~a~N~~G~~~S   87 (91)
T cd04967          73 RYQCLASNIVGTVLS   87 (91)
T ss_pred             EEEEEEEcCCCEEEe
Confidence            999999999997553

Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata

>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.48  E-value=1.1e-12  Score=58.50  Aligned_cols=63  Identities=30%  Similarity=0.472  Sum_probs=46.3

Q ss_pred             EEEEEEeeecccceeEEeeccceeEe-------cccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCce
Q psy4613          19 VTLECYVEAYPKSINYWVRDQGDMVI-------SSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEV   89 (96)
Q Consensus        19 ~~l~c~~~~~~~~~~~w~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~   89 (96)
                      +.|.|.+.|.|.|.+.|++.+.....       ...+....        ....|.|..+...|.|.|.|.+.|..|..
T Consensus         1 v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~~--------~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~   70 (79)
T cd05734           1 VTLNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLL--------SNGSLLIKHVLEEDSGYYLCKVSNDVGAD   70 (79)
T ss_pred             CEeEeeCeEeCCCEEEEEECCCccccccccccccCCCEEEe--------cCCeEEECcCCcccCEEEEEEEEeCCCCC
Confidence            47899999999999999986432110       11122211        23578999999999999999999998865

Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b)

Probab=99.47  E-value=1.3e-11  Score=55.57  Aligned_cols=69  Identities=23%  Similarity=0.312  Sum_probs=47.8

Q ss_pred             CCcEEEEEEeeecccceeEEeeccceeEecccc-eEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCC
Q psy4613          16 DTDVTLECYVEAYPKSINYWVRDQGDMVISSER-YEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLG   87 (96)
Q Consensus        16 g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g   87 (96)
                      |+++.|.|.+.+.+.+.+.|...+......... ....   .......+.|.|.+++..|+|.|.|.+.+..+
T Consensus         1 Ge~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~---~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~   70 (84)
T cd05861           1 GETITVNCIVQGNEVVDFSWTYPGKDIGKGIPEVEEVK---VPATTLRSTLTFPHATVEDSGTYECAAHESTQ   70 (84)
T ss_pred             CCcEEEEEEEECCCccEEEEEECCccCCCCceEEEEEe---cCCcEEEEEEEECCCCcCCCEEEEEEEEECcc
Confidence            678999999999889999998764322100000 0000   01112457899999999999999999998755

Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.

>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule)

Probab=99.46  E-value=1.2e-12  Score=58.09  Aligned_cols=66  Identities=21%  Similarity=0.392  Sum_probs=45.3

Q ss_pred             EEEEEEeeecccceeEEeeccceeEe-cccceEEEEeccccceEEEEEEEccCCC----CCCeeEEEEEecCCCceEE
Q psy4613          19 VTLECYVEAYPKSINYWVRDQGDMVI-SSERYEVESISRSIFDFKMRLTIKKITK----YDLGSYKCIAKNSLGEVES   91 (96)
Q Consensus        19 ~~l~c~~~~~~~~~~~w~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~i~~~~~----~d~g~y~c~~~~~~g~~~~   91 (96)
                      +.|.|.+.|.|.|.+.|++++..+.. ...+.....       ..+.|.|..+..    .|.|.|.|.+.|..|....
T Consensus         1 ~~l~C~a~G~P~P~i~W~k~g~~l~~~~~~~~~~~~-------~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s   71 (77)
T cd05874           1 IVIQCEAKGKPPPSFSWTRNGTHFDIDKDPKVTMKP-------NTGTLVINIMNGEKAEAYEGVYQCTARNERGAAVS   71 (77)
T ss_pred             CEEEeeCcccCCCeEEEEECCeECCCcCCCCEEEeC-------CCceEEEeccccCCCCCCCEEEEEEEEcCCCeEEe
Confidence            46899999999999999998765421 122222211       124566666553    3789999999999997654

Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF)

Probab=99.46  E-value=2.1e-12  Score=57.27  Aligned_cols=67  Identities=24%  Similarity=0.376  Sum_probs=46.5

Q ss_pred             EEEEEEeeecccceeEEeeccceeE-ecccceEEEEeccccceEEEEEEEccCC----CCCCeeEEEEEecCCCceEEE
Q psy4613          19 VTLECYVEAYPKSINYWVRDQGDMV-ISSERYEVESISRSIFDFKMRLTIKKIT----KYDLGSYKCIAKNSLGEVESS   92 (96)
Q Consensus        19 ~~l~c~~~~~~~~~~~w~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~i~~~~----~~d~g~y~c~~~~~~g~~~~~   92 (96)
                      +.|.|.+.|.|.|.+.|++++..+. ....++....       ....|.|..+.    ..|.|.|.|.+.|..|.....
T Consensus         1 ~~l~C~~~G~P~P~v~W~k~g~~~~~~~~~~~~~~~-------~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~   72 (77)
T cd05875           1 IIIECEAKGNPVPTFQWTRNGKFFNVAKDPRVSMRR-------RSGTLVIDFSGGGRPEDYEGEYQCFARNNLGTALSN   72 (77)
T ss_pred             CEEEEeccccCCCEEEEEECCEEccCcCCCcEEEeC-------CCceEEEeccCCCCCCCCCEEEEEEEEeccceEEEE
Confidence            4689999999999999999875432 1223332211       23567777653    246899999999999976543

Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.

>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=99.46  E-value=2.9e-12  Score=56.94  Aligned_cols=67  Identities=19%  Similarity=0.303  Sum_probs=53.0

Q ss_pred             CeEEecCceeeecCCCcEEEEEEeeeccc-ceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEE
Q psy4613           2 PVIHVPNQLVGAPIDTDVTLECYVEAYPK-SINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKC   80 (96)
Q Consensus         2 p~~~~~~~~~~~~~g~~~~l~c~~~~~~~-~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c   80 (96)
                      |.+...+....+..|+.++|.|.+.+.|. +.+.|++++..+..                ....+.|.++ ..|+|.|.|
T Consensus         1 ~vv~~~P~~~~v~~G~~V~L~C~~~~~p~~~~~~W~kng~~l~~----------------~~~~l~i~~~-~~dsG~Y~C   63 (78)
T cd05752           1 AVVSLDPPWTTIFQGEKVTLTCNGFNSPEQNSTQWYHNGKLLET----------------TTNSYRIRAA-NNDSGEYRC   63 (78)
T ss_pred             CeEEeCCCCeEeeCCCCEEEEEeCCCCCCCccEEEEECCEEeec----------------cCCeEEEeec-ccCCEEeEE
Confidence            56777888888999999999999988775 46899998654411                1245778888 899999999


Q ss_pred             EEecC
Q psy4613          81 IAKNS   85 (96)
Q Consensus        81 ~~~~~   85 (96)
                      .+.+.
T Consensus        64 ~a~~~   68 (78)
T cd05752          64 QTQGS   68 (78)
T ss_pred             ECCCC
Confidence            99875

Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D

Probab=99.46  E-value=2.3e-12  Score=58.24  Aligned_cols=68  Identities=18%  Similarity=0.340  Sum_probs=51.9

Q ss_pred             CceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecC
Q psy4613           8 NQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNS   85 (96)
Q Consensus         8 ~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~   85 (96)
                      +....+..|+++.|.|.+.+ +.+.+.|.+++..+.....++..         ....|.|.+++..|+|.|.|.+.+.
T Consensus         3 P~~~~v~~G~~v~L~C~~~~-~~~~i~W~~ng~~i~~~~~r~~~---------~~~~L~I~nv~~~DsG~Y~C~a~e~   70 (87)
T cd05873           3 PRQRTFKLGNNAELKCSPKS-NLARVVWKFDGKVLTPESAKYLL---------YRDGLLIFNASEADAGRYQCLSVEK   70 (87)
T ss_pred             cceEEEECCCCEEEEEECCC-CCCeEEEEECCEECCCCCceEEE---------ECCcEEEeCCCHHHCEEEEEEEEec
Confidence            45567889999999999765 67789999997665432233332         2256899999999999999999875

Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas

>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4

Probab=99.46  E-value=2.5e-12  Score=57.88  Aligned_cols=75  Identities=19%  Similarity=0.321  Sum_probs=53.0

Q ss_pred             CcEEEEEEeee--cccceeEEeeccceeEe--cccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCceEEE
Q psy4613          17 TDVTLECYVEA--YPKSINYWVRDQGDMVI--SSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVESS   92 (96)
Q Consensus        17 ~~~~l~c~~~~--~~~~~~~w~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~~~~   92 (96)
                      +++.|.|.+.+  .+.+.+.|++++..+..  ...++......    ...+.|.|.+++..|.|.|.|.+.+..+....+
T Consensus         1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~~~~~~----~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~   76 (85)
T cd05853           1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFERVGGQ----DSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSAA   76 (85)
T ss_pred             CcEEEEEEeccCCCCCcEEEEEECCEECcccCCCccEEEeccC----CCCCcEEEecCCHHHCEEEEEEEEcccCceEEE
Confidence            36789999877  44668899999766642  12232221100    012479999999999999999999999988777


Q ss_pred             EEe
Q psy4613          93 IRL   95 (96)
Q Consensus        93 ~~l   95 (96)
                      ..|
T Consensus        77 a~L   79 (85)
T cd05853          77 ADL   79 (85)
T ss_pred             EEE
Confidence            655

Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.

>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1

Probab=99.45  E-value=4.2e-12  Score=56.17  Aligned_cols=71  Identities=21%  Similarity=0.428  Sum_probs=49.9

Q ss_pred             EEEEEEeee-cccceeEEeeccceeEecc-c--ceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCceEEEEE
Q psy4613          19 VTLECYVEA-YPKSINYWVRDQGDMVISS-E--RYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIR   94 (96)
Q Consensus        19 ~~l~c~~~~-~~~~~~~w~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~~~~~~   94 (96)
                      +.|.|.+.+ .|.+.+.|++++..+.... .  ++.....     .....|.|.++...|+|.|.|.+.|..|....++.
T Consensus         1 ~~L~C~a~~~~p~~~~~W~~~g~~i~~~~~~~~~~~~~~~-----~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~~~~   75 (76)
T cd05895           1 LVLRCETVSEYPSLRFKWFKNGKEIGAKNKPDNKIKIRKK-----KKSSELQISKASLADNGEYKCMVSSKLGNDSVTAN   75 (76)
T ss_pred             CEEEEecccCCCCCceEEEECCcccccCCCCCceEEEEeC-----CcEEEEEECcCCcccCEEEEEEEEeCCCceeEEEe
Confidence            368999875 5778999999866553211 1  1121110     12367999999999999999999999998776654

Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process

>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=99.44  E-value=2.4e-11  Score=55.92  Aligned_cols=72  Identities=19%  Similarity=0.302  Sum_probs=52.7

Q ss_pred             ceeeecCCCcEEEEEEeeecccceeEEeeccceeEe-------cccceEEEEeccccceEEEEEEEccCCCCCCeeEEEE
Q psy4613           9 QLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVI-------SSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCI   81 (96)
Q Consensus         9 ~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~   81 (96)
                      ....+..|+++.|.|.+.+.+.+.+.|.+.+..+..       ...++......    .....|.|.++...|.|.|.|.
T Consensus         5 ~~~tv~~G~tv~L~C~v~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~----~~~~~L~I~nV~~~D~G~YtC~   80 (95)
T cd05882           5 QDETVAVGGTVTLKCGVKEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVKST----PTELIISISNVQLSDEGEYTCS   80 (95)
T ss_pred             ccEEEecCCcEEEEEEEeCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEeCC----CceEEEEECCCCcccCEEEEEE
Confidence            456788999999999999999999999987654321       11222221110    0236899999999999999999


Q ss_pred             Eec
Q psy4613          82 AKN   84 (96)
Q Consensus        82 ~~~   84 (96)
                      +..
T Consensus        81 ~~t   83 (95)
T cd05882          81 IFT   83 (95)
T ss_pred             EEe
Confidence            876

Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format

>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=99.44  E-value=1.6e-12  Score=57.68  Aligned_cols=66  Identities=23%  Similarity=0.399  Sum_probs=45.9

Q ss_pred             EEEEEEeeecccceeEEeeccceeEec-ccceEEEEeccccceEEEEEEEccCCC----CCCeeEEEEEecCCCceEE
Q psy4613          19 VTLECYVEAYPKSINYWVRDQGDMVIS-SERYEVESISRSIFDFKMRLTIKKITK----YDLGSYKCIAKNSLGEVES   91 (96)
Q Consensus        19 ~~l~c~~~~~~~~~~~w~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~----~d~g~y~c~~~~~~g~~~~   91 (96)
                      +.|.|.+.|.|.|.+.|++++..+... ..+.....       ....|.|..+..    .|.|.|.|.+.|..|....
T Consensus         1 i~l~C~~~G~P~P~v~W~k~g~~l~~~~~~~~~~~~-------~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s   71 (77)
T cd05733           1 IVIKCEAKGNPPPTFSWTRNGTHFDPEKDPRVTMKP-------DSGTLVIDNMNGGRAEDYEGEYQCYASNELGTAIS   71 (77)
T ss_pred             CEEEeeCcccCCCeEEEEECCeECCCCCCCCEEEeC-------CCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEEc
Confidence            468999999999999999986554321 12222111       135677777643    6899999999999997543

Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.

>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin

Probab=99.43  E-value=2.9e-12  Score=58.32  Aligned_cols=80  Identities=19%  Similarity=0.254  Sum_probs=54.7

Q ss_pred             CceeeecCCCcEEEEEEeeecccceeEEeeccceeEeccc-ceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCC
Q psy4613           8 NQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSE-RYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSL   86 (96)
Q Consensus         8 ~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~   86 (96)
                      +..+.+..|+.+.|.|.+.+ +.+.+.|++++..+..... ......       ....|.|.+++..|.|.|.|.+.+..
T Consensus         3 ~~~~~v~~g~~v~L~C~~~~-p~~~i~W~k~~~~~~~~~~~~~~~~~-------~~~~L~I~~~~~~D~G~Y~C~a~~~~   74 (89)
T cd04979           3 EKVVTVVEGNSVFLECSPKS-NLASVVWLFQGGPLQRKEEPEERLLV-------TEDGLLIRSVSPADAGVYTCQSVEHG   74 (89)
T ss_pred             ceEEEEECCCcEEEEEeCCC-CCceEEEEECCcccccccCcCceEEE-------cCCCEEEccCCHHHCEEEEEEEecCc
Confidence            45567889999999999877 7789999998655432110 111111       12458899999999999999998654


Q ss_pred             C-ceEEEEEe
Q psy4613          87 G-EVESSIRL   95 (96)
Q Consensus        87 g-~~~~~~~l   95 (96)
                      + ....+..|
T Consensus        75 ~~~~~~~~~l   84 (89)
T cd04979          75 FKQTLATYSL   84 (89)
T ss_pred             cceeEeEEEE
Confidence            3 34444433

Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.

>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=99.40  E-value=8.1e-11  Score=54.19  Aligned_cols=73  Identities=19%  Similarity=0.286  Sum_probs=52.4

Q ss_pred             ceeeecCCCcEEEEEEeeecccceeEEeeccceeEe-------cccceEEEEeccccceEEEEEEEccCCCCCCeeEEEE
Q psy4613           9 QLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVI-------SSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCI   81 (96)
Q Consensus         9 ~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~   81 (96)
                      +.+.+..|+++.|.|.+.+.+.+.+.|++.+...+.       ...++......    .....|.|.+++.+|+|.|.|.
T Consensus         5 ~~v~v~eG~~v~L~C~~~~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~----~~~~sL~I~~v~~~DsG~Y~C~   80 (95)
T cd07701           5 QNVTVVEGGTANLTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRAS----WHELSISISDVSLSDEGQYTCS   80 (95)
T ss_pred             ceEEEecCCcEEEEEEEecCCceEEEEeCCCCeEEEEcCcccccCCCEEEEECC----CCcEEEEECcCCcccCEEEEEE
Confidence            457789999999999999999999999864332221       12233221110    1236799999999999999999


Q ss_pred             EecC
Q psy4613          82 AKNS   85 (96)
Q Consensus        82 ~~~~   85 (96)
                      +...
T Consensus        81 ~~t~   84 (95)
T cd07701          81 LFTM   84 (95)
T ss_pred             eEee
Confidence            8864

Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.

>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R)

Probab=99.36  E-value=2.1e-11  Score=55.16  Aligned_cols=78  Identities=19%  Similarity=0.204  Sum_probs=51.1

Q ss_pred             CCcEEEEEEeeeccc--ceeEEeeccceeEe--cccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCceEE
Q psy4613          16 DTDVTLECYVEAYPK--SINYWVRDQGDMVI--SSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVES   91 (96)
Q Consensus        16 g~~~~l~c~~~~~~~--~~~~w~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~~~   91 (96)
                      |+.+.|.|.+.+.+.  ..+.|...+.....  .......  .........+.|.|.+++..|.|.|.|.+.|..|....
T Consensus         1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~--~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~   78 (86)
T cd05862           1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRR--SLQEHTELSSTLTIENVTLSDLGRYTCTASSGQMIAKN   78 (86)
T ss_pred             CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecccccc--cccccceeeeEEEEecCCcccCEEEEEEEeecceEecc
Confidence            678999999987654  46789776543211  0010000  00011124578999999999999999999998887666


Q ss_pred             EEEe
Q psy4613          92 SIRL   95 (96)
Q Consensus        92 ~~~l   95 (96)
                      .+.|
T Consensus        79 ~t~~   82 (86)
T cd05862          79 STIV   82 (86)
T ss_pred             cEEE
Confidence            5544

IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge

>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=99.36  E-value=6.6e-12  Score=57.51  Aligned_cols=72  Identities=18%  Similarity=0.194  Sum_probs=55.4

Q ss_pred             ceeeecCCCcEEEEEE-eeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCe-eEEEEEecCC
Q psy4613           9 QLVGAPIDTDVTLECY-VEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLG-SYKCIAKNSL   86 (96)
Q Consensus         9 ~~~~~~~g~~~~l~c~-~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g-~y~c~~~~~~   86 (96)
                      +.+.+.+|+.+.|.|. ..+.|.|.+.|..+....+....+....        ..+.|.|.++...|.| .|.|.+.+..
T Consensus        11 ~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i~~~~Ri~~~--------~~GnL~fs~v~~~D~g~~Y~C~a~~~~   82 (95)
T cd05845          11 RPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLHITQDERVSMG--------QNGNLYFANVEEQDSHPDYICHAHFPG   82 (95)
T ss_pred             ceeEEecCCCEEEEecCCCCCCCCEEEEECCCCccccccccEEEC--------CCceEEEEEEehhhCCCCeEEEEEccc
Confidence            5677889999999997 6899999999997754443333333222        2378999999999999 8999999875


Q ss_pred             Cc
Q psy4613          87 GE   88 (96)
Q Consensus        87 g~   88 (96)
                      ..
T Consensus        83 ~~   84 (95)
T cd05845          83 LR   84 (95)
T ss_pred             cc
Confidence            43

Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>KOG3513|consensus

Probab=99.35  E-value=1.5e-11  Score=74.75  Aligned_cols=84  Identities=29%  Similarity=0.498  Sum_probs=68.9

Q ss_pred             CeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccc---eEEEEeccccceEEEEEEEccCCCCCCeeE
Q psy4613           2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSER---YEVESISRSIFDFKMRLTIKKITKYDLGSY   78 (96)
Q Consensus         2 p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y   78 (96)
                      |.+....+...+..|+.+.+.|.+.+.|.|.+.|.+++..+. ...+   ..+         ...+|.|.++...|+|.|
T Consensus       332 P~w~~~~~d~~~~~gs~v~~eC~a~g~P~p~v~WlkNg~pl~-~~~r~~~~~i---------~~g~L~is~v~~~dsg~Y  401 (1051)
T KOG3513|consen  332 PYWLQKPQDTEADTGSNVTLECKASGKPNPTVKWLKNGEPLE-PAERDPRYKI---------DDGTLIISNVQESDSGVY  401 (1051)
T ss_pred             chhhcccceeEecCCCCeEEEEEecCCCCCceEEeeCCeecC-ccCCCcceEE---------eCCEEEEEecccccCeEE
Confidence            555566778889999999999999999999999999976654 2222   333         347899999999999999


Q ss_pred             EEEEecCCCceEEEEEe
Q psy4613          79 KCIAKNSLGEVESSIRL   95 (96)
Q Consensus        79 ~c~~~~~~g~~~~~~~l   95 (96)
                      +|.+.|..|...+...|
T Consensus       402 QC~A~Nk~G~i~anA~L  418 (1051)
T KOG3513|consen  402 QCIAENKYGTIYANAEL  418 (1051)
T ss_pred             EeeeecccceEeeeeEE
Confidence            99999999988777655

>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4

Probab=99.34  E-value=2.4e-11  Score=55.72  Aligned_cols=77  Identities=17%  Similarity=0.130  Sum_probs=51.6

Q ss_pred             eeecCCCcEEEEEEeeecccceeEEeecccee-Eeccc------------ceEEEEeccccceEEEEEEEccCCCCCCee
Q psy4613          11 VGAPIDTDVTLECYVEAYPKSINYWVRDQGDM-VISSE------------RYEVESISRSIFDFKMRLTIKKITKYDLGS   77 (96)
Q Consensus        11 ~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~-~~~~~------------~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~   77 (96)
                      +.+..|++++|.|.+.+.+.+.+.|++.+... ....+            +......  ........|.|.+++.+|+|.
T Consensus         2 v~~~~G~~VtL~C~~s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~--~~~~g~~~L~I~~l~~sDsgt   79 (94)
T cd07690           2 VLGKKGDTAELPCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRN--LWDQGSFPLIIKNLKIEDSDT   79 (94)
T ss_pred             eEeeCCCCEEEEEEeCCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecc--cCCCCeEEEEECCCCHHHCEE
Confidence            35788999999999998888999998654222 11111            1111110  000123569999999999999


Q ss_pred             EEEEEecCCCce
Q psy4613          78 YKCIAKNSLGEV   89 (96)
Q Consensus        78 y~c~~~~~~g~~   89 (96)
                      |.|.+.+..+..
T Consensus        80 Y~C~v~~~~~~~   91 (94)
T cd07690          80 YICEVEDKKEEV   91 (94)
T ss_pred             EEEEECCccceE
Confidence            999998876543

Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=99.34  E-value=1.6e-11  Score=56.20  Aligned_cols=73  Identities=15%  Similarity=0.094  Sum_probs=53.4

Q ss_pred             eeeecCCCcEEEEEEeeec-----ccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEec
Q psy4613          10 LVGAPIDTDVTLECYVEAY-----PKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKN   84 (96)
Q Consensus        10 ~~~~~~g~~~~l~c~~~~~-----~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~   84 (96)
                      ...+..|+...|.|...+.     +.|.+.|++++..+..  .+....        ....|.|..+..+|+|.|.|.+.+
T Consensus         4 ~~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~--~~~~~~--------~~~~L~I~~v~~~DsG~YtC~~~n   73 (92)
T cd05757           4 KQILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEG--DRKRFV--------KGSKLLIQNVTEEDAGNYTCKLTF   73 (92)
T ss_pred             eEEEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCC--CccEEe--------cCCEEEEeeCChhhCEEEEEEEEe
Confidence            3457889999999986532     4679999999765432  222211        236799999999999999999999


Q ss_pred             CCCceEEE
Q psy4613          85 SLGEVESS   92 (96)
Q Consensus        85 ~~g~~~~~   92 (96)
                      ..+.....
T Consensus        74 ~~~~~~~~   81 (92)
T cd05757          74 THNGKQYN   81 (92)
T ss_pred             cCCCEEEE
Confidence            87765444

Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1

>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively)

Probab=99.33  E-value=3.5e-10  Score=52.05  Aligned_cols=74  Identities=20%  Similarity=0.300  Sum_probs=51.7

Q ss_pred             ceeeecCCCcEEEEEEeeecccceeEEeeccceeEe-------cccceEEEEeccccceEEEEEEEccCCCCCCeeEEEE
Q psy4613           9 QLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVI-------SSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCI   81 (96)
Q Consensus         9 ~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~   81 (96)
                      +.+.+..|+++.|.|.+.+.+.+.+.|++.+...+.       ...++.....  .  .....|.|.+++..|.|.|.|.
T Consensus         5 ~~~~v~~G~~v~L~C~~~~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~--~--~~~~~L~I~~v~~~DsG~Y~C~   80 (95)
T cd05717           5 QDVTVVEGGTATLKCRVKNNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLVNF--S--ANELSISISNVSLSDEGRYTCS   80 (95)
T ss_pred             CcEEEcCCCCEEEEEEECCCCCceEEEeCCCCcEEEeccccccccCcEEEEcC--C--CCeeEEEEccCCcccCEEEEEE
Confidence            456788999999999998878889999864332221       1123322110  0  1235799999999999999999


Q ss_pred             EecCC
Q psy4613          82 AKNSL   86 (96)
Q Consensus        82 ~~~~~   86 (96)
                      +....
T Consensus        81 ~~~~~   85 (95)
T cd05717          81 LYTMP   85 (95)
T ss_pred             EecCC
Confidence            98754

Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form

>smart00408 IGc2 Immunoglobulin C-2 Type

Probab=99.32  E-value=3.2e-11  Score=50.98  Aligned_cols=63  Identities=33%  Similarity=0.521  Sum_probs=46.8

Q ss_pred             CCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCC
Q psy4613          15 IDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLG   87 (96)
Q Consensus        15 ~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g   87 (96)
                      .|..+.|.|.+.+.+.+.+.|++++..+.   .......       ....|.|.++...|.|.|.|.+.+..|
T Consensus         1 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~---~~~~~~~-------~~~~L~i~~~~~~d~G~Y~C~~~n~~g   63 (63)
T smart00408        1 EGQSVTLTCPAEGDPVPNITWLKDGKPLP---ESNRLSA-------SGSTLTIKSVSLEDSGEYTCVAENSAG   63 (63)
T ss_pred             CCceEEEEeeCccCCCCeEEEEECCEECC---CCCEEec-------CCcEEEEeeCCcccCEEEEEEEecCCC
Confidence            37789999998888888999998765443   1111111       235789999999999999999988654

>smart00410 IG_like Immunoglobulin like

Probab=99.32  E-value=5e-10  Score=49.91  Aligned_cols=80  Identities=31%  Similarity=0.443  Sum_probs=56.9

Q ss_pred             eeeecCCCcEEEEEEeeecccceeEEeec-cceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCc
Q psy4613          10 LVGAPIDTDVTLECYVEAYPKSINYWVRD-QGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGE   88 (96)
Q Consensus        10 ~~~~~~g~~~~l~c~~~~~~~~~~~w~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~   88 (96)
                      .+.+..|+.+.|.|.+.+.+.+.+.|++. +..+. ...+.......     ....|.|.+++..|.|.|.|.+.+..+.
T Consensus         3 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~-~~~~~~~~~~~-----~~~~l~i~~~~~~d~G~Y~C~v~~~~~~   76 (86)
T smart00410        3 SVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLA-ESGRFSVSRSG-----SNSTLTISNVTPEDSGTYTCAATNSSGS   76 (86)
T ss_pred             cEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcC-CCCcEEEEEcC-----CeeEEEEEeeccccCeEEEEEEEcCCCe
Confidence            45578899999999999887889999887 33322 22333322211     1367999999999999999999987776


Q ss_pred             eEEEEEe
Q psy4613          89 VESSIRL   95 (96)
Q Consensus        89 ~~~~~~l   95 (96)
                      ....+.|
T Consensus        77 ~~~~~~l   83 (86)
T smart00410       77 ASSTTTL   83 (86)
T ss_pred             EEEEEEE
Confidence            6555443

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.

>smart00409 IG Immunoglobulin

Probab=99.32  E-value=5e-10  Score=49.91  Aligned_cols=80  Identities=31%  Similarity=0.443  Sum_probs=56.9

Q ss_pred             eeeecCCCcEEEEEEeeecccceeEEeec-cceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCc
Q psy4613          10 LVGAPIDTDVTLECYVEAYPKSINYWVRD-QGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGE   88 (96)
Q Consensus        10 ~~~~~~g~~~~l~c~~~~~~~~~~~w~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~   88 (96)
                      .+.+..|+.+.|.|.+.+.+.+.+.|++. +..+. ...+.......     ....|.|.+++..|.|.|.|.+.+..+.
T Consensus         3 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~-~~~~~~~~~~~-----~~~~l~i~~~~~~d~G~Y~C~v~~~~~~   76 (86)
T smart00409        3 SVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLA-ESGRFSVSRSG-----SNSTLTISNVTPEDSGTYTCAATNSSGS   76 (86)
T ss_pred             cEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcC-CCCcEEEEEcC-----CeeEEEEEeeccccCeEEEEEEEcCCCe
Confidence            45578899999999999887889999887 33322 22333322211     1367999999999999999999987776


Q ss_pred             eEEEEEe
Q psy4613          89 VESSIRL   95 (96)
Q Consensus        89 ~~~~~~l   95 (96)
                      ....+.|
T Consensus        77 ~~~~~~l   83 (86)
T smart00409       77 ASSTTTL   83 (86)
T ss_pred             EEEEEEE
Confidence            6555443

>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR)

Probab=99.31  E-value=6.3e-10  Score=51.37  Aligned_cols=86  Identities=20%  Similarity=0.316  Sum_probs=63.9

Q ss_pred             ceeeecCCCcEEEEEEeeecccce-eEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCC
Q psy4613           9 QLVGAPIDTDVTLECYVEAYPKSI-NYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLG   87 (96)
Q Consensus         9 ~~~~~~~g~~~~l~c~~~~~~~~~-~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g   87 (96)
                      ..+.+..|.++.|.|.+...|.|. +.|.+.+..+....... ..........-.+.|.+..++..|.|.|.|.+.|...
T Consensus        11 ~~~~v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~l~~~~~~~-~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~   89 (101)
T cd05860          11 TTIFVNAGENLDLIVEYEAYPKPEHQQWIYMNRTLTNTSDHY-VKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSDA   89 (101)
T ss_pred             ceEEEECCCCEEEEEEEEeCCCCeeeEEEcCCcccCccccce-eEEeccCceEEEEEEEEeecChhhCcEEEEEEECCCC
Confidence            456789999999999999999997 99998765543222221 1111111222458899999999999999999999988


Q ss_pred             ceEEEEEe
Q psy4613          88 EVESSIRL   95 (96)
Q Consensus        88 ~~~~~~~l   95 (96)
                      ....++.|
T Consensus        90 ~~s~tF~l   97 (101)
T cd05860          90 SASVTFNV   97 (101)
T ss_pred             eEEEEEEE
Confidence            88877765

Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.

>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin

Probab=99.30  E-value=1.7e-10  Score=52.68  Aligned_cols=75  Identities=21%  Similarity=0.356  Sum_probs=50.6

Q ss_pred             eeeecCCCcEEEEEEeeecccceeEEeeccce--eEe---cccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEec
Q psy4613          10 LVGAPIDTDVTLECYVEAYPKSINYWVRDQGD--MVI---SSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKN   84 (96)
Q Consensus        10 ~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~   84 (96)
                      .+.+..|+++.|.|.. +.|.+.+.|++....  ...   ...++..         ....|.|..+...|+|.|.|.+.+
T Consensus         5 ~~~~~eG~~v~L~C~~-~~p~p~v~Wykq~~g~~~~~~~~~~~r~~~---------~~~~L~I~~~~~~DsG~Y~C~a~~   74 (91)
T cd05871           5 VVYGVENNSTFLECLP-KSPQASVKWLFQRGGDQRKEEVKTEERLIH---------TERGLLLRSLQRSDAGVYTCTAVE   74 (91)
T ss_pred             EEEEecCCcEEEEEEC-CCCCceEEEEEECCCCCccccccccccEEE---------ecCeEEEeeCChhHCEEEEEEEEc
Confidence            4557889999999996 468889999974321  110   1122221         225689999999999999999974


Q ss_pred             -CCCceEEEEE
Q psy4613          85 -SLGEVESSIR   94 (96)
Q Consensus        85 -~~g~~~~~~~   94 (96)
                       ..+.......
T Consensus        75 ~~~~~~~~~~~   85 (91)
T cd05871          75 HSFSQTLAKYT   85 (91)
T ss_pred             cCCeEEEEEEE
Confidence             5554444433

Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula

>KOG3513|consensus

Probab=99.28  E-value=3.1e-11  Score=73.53  Aligned_cols=77  Identities=32%  Similarity=0.516  Sum_probs=64.5

Q ss_pred             eeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCce
Q psy4613          10 LVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEV   89 (96)
Q Consensus        10 ~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~   89 (96)
                      .+.+..|..+.|.|.+.+.|.+.+.|.+.+. ......++.+..        ..+|.|.+++..|+|.|.|.+.|.+|..
T Consensus       435 ~~~a~~g~~v~i~C~~~asP~p~~~W~k~~~-~~~~~~r~~i~e--------dGtL~I~n~t~~DaG~YtC~A~N~~G~a  505 (1051)
T KOG3513|consen  435 KVMAVVGGTVTIDCKPFASPKPKVSWLKGGE-KLLQSGRIRILE--------DGTLEISNVTRSDAGKYTCVAENKLGKA  505 (1051)
T ss_pred             EEEEEeCCeEEEeeccCCCCcceEEEEcCCc-ccccCceEEECC--------CCcEEecccCcccCcEEEEEEEcccCcc
Confidence            3567889999999999999999999999866 444667776653        4789999999999999999999999987


Q ss_pred             EEEEEe
Q psy4613          90 ESSIRL   95 (96)
Q Consensus        90 ~~~~~l   95 (96)
                      .....|
T Consensus       506 ~~~~~L  511 (1051)
T KOG3513|consen  506 ESTGNL  511 (1051)
T ss_pred             ceEEEE
Confidence            766544

>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=99.28  E-value=2.8e-11  Score=55.54  Aligned_cols=72  Identities=24%  Similarity=0.295  Sum_probs=52.8

Q ss_pred             ceeeecCCCcEEEEEE-eeecccceeEEeeccceeEe-cccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCC
Q psy4613           9 QLVGAPIDTDVTLECY-VEAYPKSINYWVRDQGDMVI-SSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSL   86 (96)
Q Consensus         9 ~~~~~~~g~~~~l~c~-~~~~~~~~~~w~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~   86 (96)
                      ....+..|..+.|.|. ..+.|.+.+.|++++..... ...+.....       ..+.|.+.+++..|.|.|.|.+.+..
T Consensus        11 ~~~~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~~d~r~~~~~-------~~G~L~fs~v~~~D~g~Y~C~A~n~~   83 (96)
T cd05727          11 DEVKVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIPEDGRRFVSQ-------TNGNLYIAKVEASDRGNYSCFVSSPS   83 (96)
T ss_pred             CceeeeeCCcEEEeeCCCCCCCCCEEEEEECCcccccccCCCeEEeC-------CCCcEEEeecCHhhCceeEEEEEecc
Confidence            4456788999999997 46778899999998654321 222222211       23679999999999999999999865


Q ss_pred             C
Q psy4613          87 G   87 (96)
Q Consensus        87 g   87 (96)
                      .
T Consensus        84 ~   84 (96)
T cd05727          84 S   84 (96)
T ss_pred             c
Confidence            4

Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs

Probab=99.27  E-value=7.6e-11  Score=50.39  Aligned_cols=63  Identities=27%  Similarity=0.475  Sum_probs=42.2

Q ss_pred             CCcEEEEEEe-eecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEE
Q psy4613          16 DTDVTLECYV-EAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIA   82 (96)
Q Consensus        16 g~~~~l~c~~-~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~   82 (96)
                      |+++.|.|.+ ...+...+.|++++....... ......   ........|.|.+++..|+|.|.|.+
T Consensus         1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~~-~~~~~~---~~~~~~~~L~i~~v~~~d~G~Y~C~v   64 (64)
T PF00047_consen    1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEGS-TTNRST---NSVSSTSRLTISNVTPEDSGTYTCVV   64 (64)
T ss_dssp             TSEEEEEEEEEESSSTSEEEEEETTTTTSEEE-EEEEEE---TTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred             CCeEEEEeecCCCCCCcEEEEEECCccccCcc-eeEeec---ccceeeeEEEEccCCHHHCEEEEEEC
Confidence            6789999999 666777999999865543211 111110   01101224999999999999999975

; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....

>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=99.25  E-value=2.2e-09  Score=49.33  Aligned_cols=74  Identities=15%  Similarity=0.297  Sum_probs=53.9

Q ss_pred             CceeeecCCCcEEEEEEeeecccceeEEeeccceeE-------ecccceEEEEeccccceEEEEEEEccCCCCCCeeEEE
Q psy4613           8 NQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMV-------ISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKC   80 (96)
Q Consensus         8 ~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c   80 (96)
                      .+.+.+..|+++.|.|.........+.|++.+...+       ...+|+......    ....+|.|..++..|+|.|.|
T Consensus         4 ~~nvtv~~G~ta~L~C~v~~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~----~~~~tL~I~~vq~~D~G~Y~C   79 (95)
T cd05881           4 TEDVTVVEGEVAIISCRVKNNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNFS----SNELRVSLSNVSLSDEGRYFC   79 (95)
T ss_pred             cCceEEcCCCcEEEEEEEccCCccEEEEEecCCcEEEecCccccCCcCEEEEeCC----CCEEEEEECcCCcccCEEEEE
Confidence            355778999999999999987777888987664443       123344433211    134679999999999999999


Q ss_pred             EEecC
Q psy4613          81 IAKNS   85 (96)
Q Consensus        81 ~~~~~   85 (96)
                      -+...
T Consensus        80 qv~t~   84 (95)
T cd05881          80 QLYTD   84 (95)
T ss_pred             EEEcc
Confidence            98753

Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a

>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C

Probab=99.24  E-value=2.9e-10  Score=49.76  Aligned_cols=74  Identities=34%  Similarity=0.452  Sum_probs=49.5

Q ss_pred             CCeEEecCceeeecCCCcEEEEEEeeecc-cceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEE
Q psy4613           1 HPVIHVPNQLVGAPIDTDVTLECYVEAYP-KSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYK   79 (96)
Q Consensus         1 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~-~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~   79 (96)
                      +|.+...+.......+. +.|.|.+.+.+ .+.+.|+.. .......... .       ......|.+..+...|.|.|.
T Consensus         1 kP~I~~~~~~~~~~~~~-~~l~C~~~~~~~~~~~~W~~~-~~~~~~~~~~-~-------~~~~~~L~i~~v~~~~~g~y~   70 (75)
T PF13927_consen    1 KPQISVPPPPVVTSGGS-VTLTCSAEGGPPPPSISWYDS-NPSFNSNSRG-S-------SSSNSTLTISNVTRSDNGTYT   70 (75)
T ss_dssp             ESEEEEESTSEEETTEE-EEEEEEESSEESSEEEEEETE-EEEEEEEEEE-E-------EEEEEEEEESSCCGGGTEEEE
T ss_pred             CCEEEEcCCCcEeecee-EEEEEEEccccCCeEEEEEec-CCceeeeeee-c-------cceeeEEEEccCCHHhCcEEE
Confidence            47777666665554444 99999998877 778999811 1111110111 1       114578999999999999999


Q ss_pred             EEEec
Q psy4613          80 CIAKN   84 (96)
Q Consensus        80 c~~~~   84 (96)
                      |.+.|
T Consensus        71 C~a~N   75 (75)
T PF13927_consen   71 CIASN   75 (75)
T ss_dssp             EEEEE
T ss_pred             EEEEC
Confidence            99875

...

>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=99.22  E-value=2e-10  Score=51.67  Aligned_cols=64  Identities=22%  Similarity=0.138  Sum_probs=48.7

Q ss_pred             eeecCCCcEEEEEEeee-cccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCc
Q psy4613          11 VGAPIDTDVTLECYVEA-YPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGE   88 (96)
Q Consensus        11 ~~~~~g~~~~l~c~~~~-~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~   88 (96)
                      ..+..|+.++|.|.... .+...+.|++++..+...       .       ....+.|..++..|+|.|.|.+.+..+.
T Consensus         9 ~~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~~~-------~-------~~~~l~I~~~~~~dsG~Y~C~~~~~~~~   73 (83)
T cd05753           9 RVVFEGEPLVLRCHGWKNKPVYKVTYYRDGKAKKYS-------H-------SNSNLSIPQATLSDSGSYHCSGIIGSYD   73 (83)
T ss_pred             ceecCCCCEEEEeeCCCCCcceEEEEEECCeEcccc-------C-------CCceEEECccCHHHCEEEEEEEEeCCce
Confidence            35789999999999754 455679999986433210       0       1256899999999999999999988764

Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins

Probab=99.21  E-value=1.2e-09  Score=51.38  Aligned_cols=79  Identities=18%  Similarity=0.181  Sum_probs=54.1

Q ss_pred             EecCceeeecCCCcEEEEEEeeecccceeEEeeccce--e--E-e--------cccceEEEEeccccceEEEEEEEccCC
Q psy4613           5 HVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGD--M--V-I--------SSERYEVESISRSIFDFKMRLTIKKIT   71 (96)
Q Consensus         5 ~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~--~--~-~--------~~~~~~~~~~~~~~~~~~~~l~i~~~~   71 (96)
                      ..++..+.+..|+++.|.|.+...+...+.|++....  .  + .        ...++.+....   ......|.|.+++
T Consensus         2 ~q~~~~v~~~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~---~~~~~~L~I~~~~   78 (109)
T cd04983           2 TQSPQSLSVQEGENVTLNCNYSTSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDK---SRKSSSLHISAAQ   78 (109)
T ss_pred             eecCCceEEcCCCCEEEEEEECCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcc---cCCEEEEEECCCC
Confidence            3456677899999999999988777778999875321  1  0 0        11222221110   1134679999999


Q ss_pred             CCCCeeEEEEEecCC
Q psy4613          72 KYDLGSYKCIAKNSL   86 (96)
Q Consensus        72 ~~d~g~y~c~~~~~~   86 (96)
                      .+|+|.|.|.+.+..
T Consensus        79 ~~DsG~Y~C~~~~~~   93 (109)
T cd04983          79 LSDSAVYFCALSESG   93 (109)
T ss_pred             HHHCEEEEEEEecCC
Confidence            999999999998654

IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>PHA02785 IL-beta-binding protein; Provisional

Probab=99.20  E-value=1.4e-09  Score=60.13  Aligned_cols=82  Identities=16%  Similarity=0.255  Sum_probs=54.9

Q ss_pred             ceeeecCCCcEEEEEEeeeccc---ceeEEeeccceeEecc--cceEEEEecc-----ccceEEEEEEEccCCCCCCeeE
Q psy4613           9 QLVGAPIDTDVTLECYVEAYPK---SINYWVRDQGDMVISS--ERYEVESISR-----SIFDFKMRLTIKKITKYDLGSY   78 (96)
Q Consensus         9 ~~~~~~~g~~~~l~c~~~~~~~---~~~~w~~~~~~~~~~~--~~~~~~~~~~-----~~~~~~~~l~i~~~~~~d~g~y   78 (96)
                      ....+..|+.+.|.|.+.+.|.   +.+.|.+++..+....  ...++.....     ........|.|.+++.+|.|.|
T Consensus       228 ~~~~~~~G~~v~L~C~a~g~P~~~~~~v~W~kng~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~V~~~D~G~Y  307 (326)
T PHA02785        228 EGVVTSIGSNLTIACRVSLRPPTTDADVFWISNGMYYEEDDEDGDGRISVANKIYTTDKRRVITSRLNINPVKEEDATTF  307 (326)
T ss_pred             CcEEecCCCcEEEEEEEECCCCCCCceEEEEECCEECCCcCCCCceeEEEecCccccccceeeeEEEEECCcchhcCeee
Confidence            4556678999999999998776   4789999865542111  1111111000     0011346799999999999999


Q ss_pred             EEEEecCCCceE
Q psy4613          79 KCIAKNSLGEVE   90 (96)
Q Consensus        79 ~c~~~~~~g~~~   90 (96)
                      .|.+.+..+...
T Consensus       308 ~C~A~n~~~~~~  319 (326)
T PHA02785        308 TCMAFTIPSISK  319 (326)
T ss_pred             EEEEEeccCceE
Confidence            999999876544

>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A

Probab=99.17  E-value=1.8e-09  Score=47.84  Aligned_cols=69  Identities=29%  Similarity=0.476  Sum_probs=50.4

Q ss_pred             CCeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEE
Q psy4613           1 HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKC   80 (96)
Q Consensus         1 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c   80 (96)
                      +|.+..++  ..+..|+.+.|.|.+.+.+...+.|++++..+. ...               ..+.+..+...|.|.|.|
T Consensus         1 kP~l~~~~--~~v~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~-~~~---------------~~~~~~~~~~~~~g~y~C   62 (80)
T PF13895_consen    1 KPVLSSSP--QSVEEGDSVTLTCSVSGNPPPQVQWYKNGSPIN-SSQ---------------NGLFIPNVSPEDSGNYTC   62 (80)
T ss_dssp             --EEEEES--SEEETTSEEEEEEEEESSSSSEEEEEETTEEEE-EES---------------SEEEESSEEGGGTEEEEE
T ss_pred             CcEEEccc--eEEeCCCcEEEEEEEEcccceeeeeeeeeeeee-eee---------------eeeeeeeeccccCEEEEE
Confidence            47777666  346889999999999988888999998754332 100               115567788899999999


Q ss_pred             EEecCCC
Q psy4613          81 IAKNSLG   87 (96)
Q Consensus        81 ~~~~~~g   87 (96)
                      .+.+..+
T Consensus        63 ~~~~~~~   69 (80)
T PF13895_consen   63 RASNGSG   69 (80)
T ss_dssp             EEEETTE
T ss_pred             EEEeCCC
Confidence            9998654

...

>KOG4194|consensus

Probab=99.14  E-value=2.3e-10  Score=66.87  Aligned_cols=87  Identities=22%  Similarity=0.359  Sum_probs=66.0

Q ss_pred             CeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccce-eEecc-cceEEEEeccccceEEEEEEEccCCCCCCeeEE
Q psy4613           2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGD-MVISS-ERYEVESISRSIFDFKMRLTIKKITKYDLGSYK   79 (96)
Q Consensus         2 p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~   79 (96)
                      |.+...|..+....|+.+.+.|.+.|.|.|.+.|.+.++. .+... .+.+....       ...+.|.+++.+|.|.|.
T Consensus       613 PsFtktP~dltl~tg~mArl~CaAtG~P~PeIawqkdggtdFPAA~eRRl~Vmpe-------dd~f~Itnvk~eD~GiYt  685 (873)
T KOG4194|consen  613 PSFTKTPEDLTLRTGQMARLECAATGHPRPEIAWQKDGGTDFPAARERRLHVMPE-------DDVFFITNVKIEDQGIYT  685 (873)
T ss_pred             CccccCcccceeecccceeeeeeccCCCCcceeehhcCCCCCchhhhheeeecCC-------CCEEEEecccccccceeE
Confidence            4455556667788899999999999999999999988655 33222 23444332       245789999999999999


Q ss_pred             EEEecCCCceEEEEEe
Q psy4613          80 CIAKNSLGEVESSIRL   95 (96)
Q Consensus        80 c~~~~~~g~~~~~~~l   95 (96)
                      |.+.|.+|...+...|
T Consensus       686 C~A~n~AG~isanAtL  701 (873)
T KOG4194|consen  686 CTAQNVAGQISANATL  701 (873)
T ss_pred             EeeeccccceeeceEE
Confidence            9999999987665543

>PHA02826 IL-1 receptor-like protein; Provisional

Probab=99.13  E-value=1.3e-09  Score=57.38  Aligned_cols=68  Identities=21%  Similarity=0.344  Sum_probs=50.6

Q ss_pred             eeeecCCCcEEEEEEeee-----cccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEec
Q psy4613          10 LVGAPIDTDVTLECYVEA-----YPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKN   84 (96)
Q Consensus        10 ~~~~~~g~~~~l~c~~~~-----~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~   84 (96)
                      ...+..|+.+.|.|.+.+     .|.|.+.|++++..+. ...+.....       ....|.|.+++.+|+|.|.|.+..
T Consensus       138 ~~~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyKng~~l~-~~~r~~~~~-------~~~~L~I~~V~~~DsG~YtC~a~~  209 (227)
T PHA02826        138 NYQFNSGKDSKLHCYGTDGISSTFKDYTLTWYKNGNIVL-YTDRIQLRN-------NNSTLVIKSATHDDSGIYTCNLRF  209 (227)
T ss_pred             cceEecCCCEEEEeeCCCCccccCCCceEEEEECCEECC-CCCCEEEeC-------CCCEEEECcCCHHhCEEEEEEEEE
Confidence            345678999999999753     3568999999976653 334443322       235799999999999999999987


Q ss_pred             C
Q psy4613          85 S   85 (96)
Q Consensus        85 ~   85 (96)
                      .
T Consensus       210 ~  210 (227)
T PHA02826        210 N  210 (227)
T ss_pred             e
Confidence            5

>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain

Probab=99.13  E-value=1.9e-09  Score=50.84  Aligned_cols=76  Identities=21%  Similarity=0.322  Sum_probs=51.9

Q ss_pred             EecCceeeecCCCcEEEEEEeeecccceeEEeeccc--e--eEe--c-----------ccceEEEEeccccceEEEEEEE
Q psy4613           5 HVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQG--D--MVI--S-----------SERYEVESISRSIFDFKMRLTI   67 (96)
Q Consensus         5 ~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~--~--~~~--~-----------~~~~~~~~~~~~~~~~~~~l~i   67 (96)
                      ...+..+.+..|++++|.|...+ +.+.+.|++...  .  .+.  .           .+++.....  .  .....|.|
T Consensus         2 ~Q~p~~~~v~~G~~v~l~C~~~~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~--~--~~~~~L~I   76 (110)
T cd05899           2 TQSPRYLIKGRGQSVTLRCSQTS-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRP--S--LTRSSLTI   76 (110)
T ss_pred             EECCCceEEcCCCcEEEEEEECC-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECc--C--CCccEEEE
Confidence            34566788999999999999887 677899998532  1  111  0           011111110  0  02467999


Q ss_pred             ccCCCCCCeeEEEEEecC
Q psy4613          68 KKITKYDLGSYKCIAKNS   85 (96)
Q Consensus        68 ~~~~~~d~g~y~c~~~~~   85 (96)
                      .+++.+|+|.|.|.+...
T Consensus        77 ~~~~~~Dsg~Y~Ca~~~~   94 (110)
T cd05899          77 KSAEPEDSAVYLCASSLG   94 (110)
T ss_pred             CCCChhhCEEEEEEeeCC
Confidence            999999999999998864

IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain

Probab=99.10  E-value=3.2e-09  Score=49.78  Aligned_cols=77  Identities=14%  Similarity=0.294  Sum_probs=52.0

Q ss_pred             EEecCceeeecCCCcEEEEEEeeecc-cceeEEeeccc----eeEe-cc--------cceEEEEeccccceEEEEEEEcc
Q psy4613           4 IHVPNQLVGAPIDTDVTLECYVEAYP-KSINYWVRDQG----DMVI-SS--------ERYEVESISRSIFDFKMRLTIKK   69 (96)
Q Consensus         4 ~~~~~~~~~~~~g~~~~l~c~~~~~~-~~~~~w~~~~~----~~~~-~~--------~~~~~~~~~~~~~~~~~~l~i~~   69 (96)
                      +...+..+.+..|+++.|.|.+.+.. ...+.|++...    ..+. ..        .++....     ......|.|.+
T Consensus         3 v~Q~p~~~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~-----~~~~~~L~I~~   77 (106)
T cd04980           3 LTQSPATLSVSPGESATISCKASQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSG-----SGTDFTLTISR   77 (106)
T ss_pred             EEECCCcEEECCCCCEEEEEEECCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEec-----cCCEEEEEECC
Confidence            45667778899999999999987655 56799987531    1111 00        1121110     11235699999


Q ss_pred             CCCCCCeeEEEEEecC
Q psy4613          70 ITKYDLGSYKCIAKNS   85 (96)
Q Consensus        70 ~~~~d~g~y~c~~~~~   85 (96)
                      ++..|+|.|.|.+.+.
T Consensus        78 ~~~~Dsg~Y~Ca~~~~   93 (106)
T cd04980          78 VEPEDAAVYYCQQYGT   93 (106)
T ss_pred             CChHHCEEEEEEEeCC
Confidence            9999999999998754

IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1)

Probab=99.06  E-value=5.7e-09  Score=48.44  Aligned_cols=80  Identities=16%  Similarity=0.205  Sum_probs=53.8

Q ss_pred             ceeeecCCCcEEEEEEe-e----------ecccceeEEeeccceeEecc----cceEEEEeccccceEEEEEEEccCCCC
Q psy4613           9 QLVGAPIDTDVTLECYV-E----------AYPKSINYWVRDQGDMVISS----ERYEVESISRSIFDFKMRLTIKKITKY   73 (96)
Q Consensus         9 ~~~~~~~g~~~~l~c~~-~----------~~~~~~~~w~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~i~~~~~~   73 (96)
                      ..+.+..|+.+.|.|.. .          ......+.|++++.......    ...++..       ....|.|..+..+
T Consensus         8 ~~~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~-------~~~~Lwf~Pa~~e   80 (104)
T cd05896           8 KKYMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSK-------EEDSIWFRPAELQ   80 (104)
T ss_pred             eeEEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEE-------eCCEEEEEeCChh
Confidence            34668899999999985 1          11233789999853332211    1012222       3467999999999


Q ss_pred             CCeeEEEEEecCCCceEEEEEe
Q psy4613          74 DLGSYKCIAKNSLGEVESSIRL   95 (96)
Q Consensus        74 d~g~y~c~~~~~~g~~~~~~~l   95 (96)
                      |+|.|.|.+.|........+.|
T Consensus        81 DSG~Y~C~~rN~t~C~~~~i~l  102 (104)
T cd05896          81 DSGLYTCVLRNSTYCMKVSMSL  102 (104)
T ss_pred             hCeEEEEEECCCCcceEEEEEE
Confidence            9999999999987666655543

Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of

>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2)

Probab=99.06  E-value=1.1e-09  Score=50.29  Aligned_cols=71  Identities=17%  Similarity=0.113  Sum_probs=49.2

Q ss_pred             eeecCCCcEEEEEEe-e----ecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecC
Q psy4613          11 VGAPIDTDVTLECYV-E----AYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNS   85 (96)
Q Consensus        11 ~~~~~g~~~~l~c~~-~----~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~   85 (96)
                      ..+..|.+..|.|.- .    ..+.+.+.|++++..+.....++....       ....|.|..+...|.|.|.|.+.+.
T Consensus         5 ~~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~~~~~~~~~-------~~~~L~I~~v~~~D~G~YtC~~~~~   77 (95)
T cd05897           5 QILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKDNEKFYSLK-------GSTYLHIIDVSLNDSGYYTCKLQFT   77 (95)
T ss_pred             eEeccccCcEEECCCHHHcccCCCCCcEEEccCCEECcCCCcceEecC-------CCCEEEEEEcChhhCEEEEEEEEEe
Confidence            346788999999973 2    235668999999755432222222111       1246999999999999999999997


Q ss_pred             CCc
Q psy4613          86 LGE   88 (96)
Q Consensus        86 ~g~   88 (96)
                      .+.
T Consensus        78 ~~g   80 (95)
T cd05897          78 HEG   80 (95)
T ss_pred             eCC
Confidence            654

Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins

Probab=99.04  E-value=5.5e-09  Score=47.74  Aligned_cols=74  Identities=18%  Similarity=0.311  Sum_probs=50.7

Q ss_pred             CCeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEE
Q psy4613           1 HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKC   80 (96)
Q Consensus         1 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c   80 (96)
                      +|.+...+. ..+..|.+++|.|... .+...+.|++++.........         .......+.|.+++..|+|.|.|
T Consensus         2 kP~L~a~p~-~vV~~G~~VtL~C~~~-~~~~~f~l~k~g~~~~~~~~~---------~~~~~~~f~i~~v~~~~~G~Y~C   70 (91)
T cd05751           2 KPSLWAEPS-SVVPLGKPVTLRCQGP-YGAVEYRLYREGSTFAVKKPP---------EPQNKAKFFIPSMKREHAGRYRC   70 (91)
T ss_pred             CCEEEecCC-CccCCCCcEEEEEecC-CCCCEEEEEECCCCccccccC---------CCceeEEEEccCCChhHCEEEEE
Confidence            366666554 3578999999999875 455677888876432211000         00134678999999999999999


Q ss_pred             EEecC
Q psy4613          81 IAKNS   85 (96)
Q Consensus        81 ~~~~~   85 (96)
                      ...+.
T Consensus        71 ~~~~~   75 (91)
T cd05751          71 YYRSG   75 (91)
T ss_pred             EEECC
Confidence            98775

Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),

>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins

Probab=99.03  E-value=2.3e-08  Score=46.87  Aligned_cols=81  Identities=20%  Similarity=0.292  Sum_probs=49.3

Q ss_pred             CCCcEEEEEEeeecc------cceeEEeecc-----ceeE-e-cccceEE------EEeccccceEEEEEEEccCCCCCC
Q psy4613          15 IDTDVTLECYVEAYP------KSINYWVRDQ-----GDMV-I-SSERYEV------ESISRSIFDFKMRLTIKKITKYDL   75 (96)
Q Consensus        15 ~g~~~~l~c~~~~~~------~~~~~w~~~~-----~~~~-~-~~~~~~~------~~~~~~~~~~~~~l~i~~~~~~d~   75 (96)
                      .|++++|.|.+...+      ...+.|++..     .... . .......      .............|.|.+++..|+
T Consensus         1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD~   80 (106)
T cd05714           1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLEDS   80 (106)
T ss_pred             CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHHC
Confidence            488999999987643      4588998862     1111 1 1111110      000000011347799999999999


Q ss_pred             eeEEEEEecCCCceEEEEEe
Q psy4613          76 GSYKCIAKNSLGEVESSIRL   95 (96)
Q Consensus        76 g~y~c~~~~~~g~~~~~~~l   95 (96)
                      |.|.|.+.+..+.....+.|
T Consensus        81 G~Y~C~v~~~~~~~~~~v~L  100 (106)
T cd05714          81 GRYRCEVIDGIEDEQDTVEL  100 (106)
T ss_pred             EEEEEEEEcCCCceEEEEEE
Confidence            99999999876655555443

Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.

>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain

Probab=99.02  E-value=9.6e-09  Score=48.89  Aligned_cols=76  Identities=21%  Similarity=0.370  Sum_probs=50.8

Q ss_pred             ecCceeeecCCCcEEEEEEeee--cccceeEEeeccc----eeEe--c------------ccceEEEEeccccceEEEEE
Q psy4613           6 VPNQLVGAPIDTDVTLECYVEA--YPKSINYWVRDQG----DMVI--S------------SERYEVESISRSIFDFKMRL   65 (96)
Q Consensus         6 ~~~~~~~~~~g~~~~l~c~~~~--~~~~~~~w~~~~~----~~~~--~------------~~~~~~~~~~~~~~~~~~~l   65 (96)
                      ..+..+.+..|+++.|.|...+  .+.+.+.|++...    ..+.  .            ..++......   ......|
T Consensus         3 Q~p~~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~---~~~~~~L   79 (116)
T cd04982           3 QPQLSITREESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDV---GKSTSTL   79 (116)
T ss_pred             CcCCeEEeCCCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEEC---CCCEEEE
Confidence            4556778899999999999877  5677899998521    1110  0            1122211100   0024679


Q ss_pred             EEccCCCCCCeeEEEEEec
Q psy4613          66 TIKKITKYDLGSYKCIAKN   84 (96)
Q Consensus        66 ~i~~~~~~d~g~y~c~~~~   84 (96)
                      .|.+++..|+|.|.|....
T Consensus        80 ~I~~~~~~Dsg~Y~C~~~~   98 (116)
T cd04982          80 TIQNLEKEDSATYYCAYWE   98 (116)
T ss_pred             EEEECCHHHCEEEEEEEec
Confidence            9999999999999999875

IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>KOG4221|consensus

Probab=99.01  E-value=6e-09  Score=64.68  Aligned_cols=70  Identities=30%  Similarity=0.456  Sum_probs=55.6

Q ss_pred             CceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecC
Q psy4613           8 NQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNS   85 (96)
Q Consensus         8 ~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~   85 (96)
                      +....+..|+.+.|.|.+.+.+.|.+.|.+++..+...+  +++...      ....|.|.+++..|+|.|.|.+.|.
T Consensus       244 p~~~~v~~g~~v~leCvvs~~p~p~v~Wlrng~~i~~ds--~rivl~------g~~slliS~a~~~dSg~YtC~Atn~  313 (1381)
T KOG4221|consen  244 PSNAVVVEGDDVVLECVVSGVPKPSVKWLRNGEKISVDS--YRIVLV------GGSSLLISNATDDDSGKYTCRATNT  313 (1381)
T ss_pred             CCccccccCCcEEEEEEecCCCCCceEEeeCCeeeeecc--eEEEEe------cccceEEeccccccCceEEEEecCC
Confidence            344567889999999999999999999999876665443  332221      2467899999999999999999984

>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B

Probab=98.98  E-value=2.6e-09  Score=48.14  Aligned_cols=65  Identities=18%  Similarity=0.313  Sum_probs=49.0

Q ss_pred             ceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEec
Q psy4613           9 QLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKN   84 (96)
Q Consensus         9 ~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~   84 (96)
                      +...+..|.++.|.|...+. .+.+.|++++..+. ...++...         ...+.|..+...|+|.|.|.+..
T Consensus         4 ~~~tv~~g~~v~L~C~~~s~-~A~v~W~~ng~~l~-~~~r~~~~---------~~GLlI~~~~~~dsG~Y~C~s~E   68 (85)
T cd05872           4 KNRTVAPGADVVLPCQLRSN-LASPVWLFNGTPLN-AQFSYRVG---------TDGLLILVTSPEHSGTYRCYSEE   68 (85)
T ss_pred             eEEEEecCCCEEEECCCCCC-CccEEEEECCcccC-CCcceEEe---------CCCCEEEECCHhhCEEEEEEEec
Confidence            45678899999999998884 66999999876543 22333322         24577999999999999999764

Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.

>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain

Probab=98.95  E-value=1.7e-08  Score=46.69  Aligned_cols=69  Identities=19%  Similarity=0.262  Sum_probs=45.8

Q ss_pred             eecCCCcEEEEEEeeec--ccceeEEeeccc--ee--Ee-c--------ccceEEEEeccccceEEEEEEEccCCCCCCe
Q psy4613          12 GAPIDTDVTLECYVEAY--PKSINYWVRDQG--DM--VI-S--------SERYEVESISRSIFDFKMRLTIKKITKYDLG   76 (96)
Q Consensus        12 ~~~~g~~~~l~c~~~~~--~~~~~~w~~~~~--~~--~~-~--------~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g   76 (96)
                      .+..|+++.|.|.....  ....+.|++...  .+  +. .        .+++....     ......|.|.+++..|+|
T Consensus         2 ~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~-----~~~~~~L~I~~~~~~Dsg   76 (98)
T cd04984           2 SVSPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSK-----SGNTASLTISGAQTEDEA   76 (98)
T ss_pred             ccCCCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEc-----cCCEEEEEECCCChhhCE
Confidence            46789999999998764  456799987532  11  11 0        01222111     113466999999999999


Q ss_pred             eEEEEEecC
Q psy4613          77 SYKCIAKNS   85 (96)
Q Consensus        77 ~y~c~~~~~   85 (96)
                      .|.|.+.+.
T Consensus        77 ~Y~C~~~~~   85 (98)
T cd04984          77 DYYCQVWDS   85 (98)
T ss_pred             EEEEEEccC
Confidence            999998753

IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan

Probab=98.92  E-value=8.4e-08  Score=45.46  Aligned_cols=77  Identities=13%  Similarity=0.325  Sum_probs=47.4

Q ss_pred             CCCcEEEEEEeeecc------------cceeEEeeccc----eeEe-ccc----------ceEEEEeccccceEEEEEEE
Q psy4613          15 IDTDVTLECYVEAYP------------KSINYWVRDQG----DMVI-SSE----------RYEVESISRSIFDFKMRLTI   67 (96)
Q Consensus        15 ~g~~~~l~c~~~~~~------------~~~~~w~~~~~----~~~~-~~~----------~~~~~~~~~~~~~~~~~l~i   67 (96)
                      .|++++|.|.+....            .+.+.|++...    .+.. ...          |..+...  ........|.|
T Consensus         1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~--~~~~~~asL~I   78 (112)
T cd05900           1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNY--PAIPSDATLEI   78 (112)
T ss_pred             CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEeccc--CCCCCCcEEEE
Confidence            488999999987532            35899997521    1111 111          1111100  00113467999


Q ss_pred             ccCCCCCCeeEEEEEecCCCceEEEE
Q psy4613          68 KKITKYDLGSYKCIAKNSLGEVESSI   93 (96)
Q Consensus        68 ~~~~~~d~g~y~c~~~~~~g~~~~~~   93 (96)
                      .+++..|+|.|.|.+...........
T Consensus        79 ~nl~~sDsG~Y~C~V~~g~~~~~~~v  104 (112)
T cd05900          79 TELRSNDSGTYRCEVMHGIEDNYDTV  104 (112)
T ss_pred             eecccccCEEEEEEEecCCCCceeEE
Confidence            99999999999999987766554443

Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG)

Probab=98.91  E-value=1.2e-07  Score=44.03  Aligned_cols=34  Identities=24%  Similarity=0.372  Sum_probs=27.4

Q ss_pred             EEEEEEccCCCCCCeeEEEEEecCCCceEEEEEe
Q psy4613          62 KMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL   95 (96)
Q Consensus        62 ~~~l~i~~~~~~d~g~y~c~~~~~~g~~~~~~~l   95 (96)
                      ..+|.|.+++..|.|.|.|.+.+..+.....+.|
T Consensus        64 ~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~i~l   97 (100)
T cd05713          64 SVALRIHNVRASDEGLYTCFFQSDGFYEEATVEL   97 (100)
T ss_pred             cEEEEEEcCChhhCEEEEEEEecCCcEEEEEEEE
Confidence            3679999999999999999999876665555543

Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).

>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP)

Probab=98.90  E-value=1.6e-07  Score=44.02  Aligned_cols=77  Identities=23%  Similarity=0.381  Sum_probs=49.1

Q ss_pred             CCCcEEEEEEeeecc------cceeEEeeccce-----e-Eecc-----------cceEEEEeccccceEEEEEEEccCC
Q psy4613          15 IDTDVTLECYVEAYP------KSINYWVRDQGD-----M-VISS-----------ERYEVESISRSIFDFKMRLTIKKIT   71 (96)
Q Consensus        15 ~g~~~~l~c~~~~~~------~~~~~w~~~~~~-----~-~~~~-----------~~~~~~~~~~~~~~~~~~l~i~~~~   71 (96)
                      .|++++|.|.+...+      ...+.|++....     . ....           .+..+..   .. .....|.|.+++
T Consensus         1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~---~~-~~~~sL~I~~v~   76 (106)
T cd05877           1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRR---AH-DLDASLVITDLR   76 (106)
T ss_pred             CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecC---CC-CCcEEEEEccCC
Confidence            378999999987642      346899985311     1 0010           0111100   00 123579999999


Q ss_pred             CCCCeeEEEEEecCCCceEEEEEe
Q psy4613          72 KYDLGSYKCIAKNSLGEVESSIRL   95 (96)
Q Consensus        72 ~~d~g~y~c~~~~~~g~~~~~~~l   95 (96)
                      ..|+|.|.|.+.+..+.....+.|
T Consensus        77 ~~DsG~Y~C~v~~~~~~~~~~~~l  100 (106)
T cd05877          77 LEDYGRYRCEVIDGLEDESVVVAL  100 (106)
T ss_pred             hHHCEEEEEEEEecccceEEEEEE
Confidence            999999999999988876666544

Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain

Probab=98.89  E-value=7.2e-08  Score=45.91  Aligned_cols=78  Identities=22%  Similarity=0.371  Sum_probs=51.2

Q ss_pred             EEecCceeeecCCCcEEEEEEeeec-ccceeEEeeccc--e--eEec---------ccceEEEEeccccceEEEEEEEcc
Q psy4613           4 IHVPNQLVGAPIDTDVTLECYVEAY-PKSINYWVRDQG--D--MVIS---------SERYEVESISRSIFDFKMRLTIKK   69 (96)
Q Consensus         4 ~~~~~~~~~~~~g~~~~l~c~~~~~-~~~~~~w~~~~~--~--~~~~---------~~~~~~~~~~~~~~~~~~~l~i~~   69 (96)
                      +...+..+.+..|+++.|.|..... ....+.|++...  .  .+..         .+++.....   .......|.|.+
T Consensus         2 v~q~~~~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~---~~~~~~sL~I~~   78 (116)
T cd07706           2 VTQAQPDVSVQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQ---KAQKSISLTISA   78 (116)
T ss_pred             cEEeCCceEEcCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEe---ccCCEEEEEECC
Confidence            3456677889999999999997754 456789987521  1  1110         122222110   011246799999


Q ss_pred             CCCCCCeeEEEEEec
Q psy4613          70 ITKYDLGSYKCIAKN   84 (96)
Q Consensus        70 ~~~~d~g~y~c~~~~   84 (96)
                      ++..|.|.|.|.+..
T Consensus        79 ~~~~Dsg~Y~C~~~~   93 (116)
T cd07706          79 LQLEDSAKYFCALST   93 (116)
T ss_pred             CCHHHCEEEEEEEEC
Confidence            999999999999985

IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)

Probab=98.89  E-value=1.8e-07  Score=44.24  Aligned_cols=80  Identities=19%  Similarity=0.387  Sum_probs=46.6

Q ss_pred             CCCcEEEEEEeeecc----------cceeEEeeccc--ee--E-ecccc------e--EEEEeccccceEEEEEEEccCC
Q psy4613          15 IDTDVTLECYVEAYP----------KSINYWVRDQG--DM--V-ISSER------Y--EVESISRSIFDFKMRLTIKKIT   71 (96)
Q Consensus        15 ~g~~~~l~c~~~~~~----------~~~~~w~~~~~--~~--~-~~~~~------~--~~~~~~~~~~~~~~~l~i~~~~   71 (96)
                      .|++++|.|.....+          ...+.|++...  ..  . .....      +  ++.-...........|.|.+++
T Consensus         1 ~G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~   80 (110)
T cd05878           1 LSSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLR   80 (110)
T ss_pred             CCCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCC
Confidence            488999999987543          25689998521  11  1 01111      0  0000000001123669999999


Q ss_pred             CCCCeeEEEEEecCCCceEEEEE
Q psy4613          72 KYDLGSYKCIAKNSLGEVESSIR   94 (96)
Q Consensus        72 ~~d~g~y~c~~~~~~g~~~~~~~   94 (96)
                      ..|+|.|.|.+..........+.
T Consensus        81 ~sD~G~Y~C~v~~~~~~~~~~v~  103 (110)
T cd05878          81 SSDSGVYRCEVMHGIEDEQDTVP  103 (110)
T ss_pred             hhhCEEEEEEEEeCCCcceEEEE
Confidence            99999999999876544444443

Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi

>PHA02826 IL-1 receptor-like protein; Provisional

Probab=98.89  E-value=2.2e-08  Score=52.86  Aligned_cols=86  Identities=23%  Similarity=0.263  Sum_probs=54.9

Q ss_pred             ceeeecCCCcEEEEEEeeecc-----------cceeEEeeccceeEe--cccceEEEEecccc-ceEEEEEEEccCCCCC
Q psy4613           9 QLVGAPIDTDVTLECYVEAYP-----------KSINYWVRDQGDMVI--SSERYEVESISRSI-FDFKMRLTIKKITKYD   74 (96)
Q Consensus         9 ~~~~~~~g~~~~l~c~~~~~~-----------~~~~~w~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d   74 (96)
                      ..+.+.+|+.+.|.|.+.+.+           .+.+.|++.+.....  ...+.......... ......|.|.+++..|
T Consensus        30 ~~~~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~~r~~~L~I~~v~~~D  109 (227)
T PHA02826         30 TPVYAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEIGDRSENLWIGNVINID  109 (227)
T ss_pred             ceEEecCCCCEEEEccccccccccccccccCCCccEEEEeCCeEEEEEcCCCccccccccccceecCCCeEEECCCChHH
Confidence            456788999999999976533           448899987543211  11110000000000 0023579999999999


Q ss_pred             CeeEEEEEecCCCceEEEEE
Q psy4613          75 LGSYKCIAKNSLGEVESSIR   94 (96)
Q Consensus        75 ~g~y~c~~~~~~g~~~~~~~   94 (96)
                      +|.|.|.+.|..+.....+.
T Consensus       110 sG~Y~C~a~N~~~~~~~~i~  129 (227)
T PHA02826        110 EGIYICTISSGNICEESTIR  129 (227)
T ss_pred             CEEEEEEEEECCcceEEEEE
Confidence            99999999998877655544

>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=98.87  E-value=2.4e-07  Score=43.58  Aligned_cols=79  Identities=27%  Similarity=0.426  Sum_probs=52.5

Q ss_pred             EEecCceeeecCCCcEEEEEEee-ecccceeEEeeccc----eeEe-c-c------------cceEEEEeccccceEEEE
Q psy4613           4 IHVPNQLVGAPIDTDVTLECYVE-AYPKSINYWVRDQG----DMVI-S-S------------ERYEVESISRSIFDFKMR   64 (96)
Q Consensus         4 ~~~~~~~~~~~~g~~~~l~c~~~-~~~~~~~~w~~~~~----~~~~-~-~------------~~~~~~~~~~~~~~~~~~   64 (96)
                      +..++..+.+..|+++.|.|... ......+.|++...    ..+. . .            .+..+....   ......
T Consensus         4 vt~~~~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~---~~~~~s   80 (114)
T PF07686_consen    4 VTQPPSPVTVQEGESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNG---SQNNFS   80 (114)
T ss_dssp             EEEEESEEEEETTSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEET---TTTEEE
T ss_pred             EEEeCCeEEEecCCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecc---cCCeEE
Confidence            44557778899999999999998 44556889988432    1111 0 0            011111100   012467


Q ss_pred             EEEccCCCCCCeeEEEEEecC
Q psy4613          65 LTIKKITKYDLGSYKCIAKNS   85 (96)
Q Consensus        65 l~i~~~~~~d~g~y~c~~~~~   85 (96)
                      |.|.+++..|+|.|.|.+...
T Consensus        81 L~i~~l~~~DsG~Y~C~v~~~  101 (114)
T PF07686_consen   81 LTIKNLQPSDSGTYFCQVSTS  101 (114)
T ss_dssp             EEESSESGGGEEEEEEEEEES
T ss_pred             EEECCCCcCcCEEEEEEEEEC
Confidence            999999999999999998876

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....

>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)

Probab=98.87  E-value=1.6e-07  Score=42.04  Aligned_cols=66  Identities=20%  Similarity=0.273  Sum_probs=41.6

Q ss_pred             EEEEEEeee-cccceeEEeeccceeEecccceEEEEecc-ccceEEEEEEEccCCCCCCeeEEEEEecCC
Q psy4613          19 VTLECYVEA-YPKSINYWVRDQGDMVISSERYEVESISR-SIFDFKMRLTIKKITKYDLGSYKCIAKNSL   86 (96)
Q Consensus        19 ~~l~c~~~~-~~~~~~~w~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~   86 (96)
                      +.|.|.+.+ .|.+.+.|++++..+. . .......... ..+...+.|.+......|.+.|.|.+.+..
T Consensus         2 ~~L~C~v~g~~P~~~v~W~~~g~~l~-~-~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~   69 (82)
T cd05759           2 YNLTCRARGAKPAAEIIWFRDGEVLD-G-ATYSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEA   69 (82)
T ss_pred             EEEEEEEeCccCCCEEEEEECCEEcc-C-ceeeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCcc
Confidence            578999987 5778999999865442 1 1111111111 112234567777777778889999998854

Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd00099 IgV Immunoglobulin variable domain (IgV)

Probab=98.85  E-value=1.1e-07  Score=44.32  Aligned_cols=73  Identities=22%  Similarity=0.330  Sum_probs=48.3

Q ss_pred             eecCCCcEEEEEEeeec-ccceeEEeeccc----eeEe------------cccceEEEEeccccceEEEEEEEccCCCCC
Q psy4613          12 GAPIDTDVTLECYVEAY-PKSINYWVRDQG----DMVI------------SSERYEVESISRSIFDFKMRLTIKKITKYD   74 (96)
Q Consensus        12 ~~~~g~~~~l~c~~~~~-~~~~~~w~~~~~----~~~~------------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d   74 (96)
                      .+..|+++.|.|.+... ....+.|++...    ..+.            ...+......   .......|.|.+++..|
T Consensus         2 ~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~---~~~~~~sL~I~~v~~~D   78 (105)
T cd00099           2 SVSEGESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRD---SSKSSFTLTISSLQPED   78 (105)
T ss_pred             eecCCCCEEEEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEe---ccCCEEEEEECCCCHHH
Confidence            46789999999998875 566899988532    1110            0112221111   00024579999999999


Q ss_pred             CeeEEEEEecCCC
Q psy4613          75 LGSYKCIAKNSLG   87 (96)
Q Consensus        75 ~g~y~c~~~~~~g   87 (96)
                      .|.|.|.+.+..+
T Consensus        79 ~G~Y~C~v~~~~~   91 (105)
T cd00099          79 SAVYYCAVSLSGG   91 (105)
T ss_pred             CEEEEEEEecCCC
Confidence            9999999987654

IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0)

Probab=98.85  E-value=1.9e-07  Score=44.51  Aligned_cols=77  Identities=21%  Similarity=0.267  Sum_probs=48.2

Q ss_pred             CceeeecCCCcEEEEEEeeecc----cceeEEeeccc------eeE-ecc------------cceEEEEeccccceEEEE
Q psy4613           8 NQLVGAPIDTDVTLECYVEAYP----KSINYWVRDQG------DMV-ISS------------ERYEVESISRSIFDFKMR   64 (96)
Q Consensus         8 ~~~~~~~~g~~~~l~c~~~~~~----~~~~~w~~~~~------~~~-~~~------------~~~~~~~~~~~~~~~~~~   64 (96)
                      +..+.+..|+.+.|.|.+....    ...+.|.+...      ... ...            .|..+..   +......+
T Consensus         5 ~~ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g---~~~~~daS   81 (116)
T cd05879           5 DREVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVG---NPSRKDGS   81 (116)
T ss_pred             cceEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeC---CCCcCeeE
Confidence            3456788999999999987632    34788943211      011 000            1111111   11113467


Q ss_pred             EEEccCCCCCCeeEEEEEecCCC
Q psy4613          65 LTIKKITKYDLGSYKCIAKNSLG   87 (96)
Q Consensus        65 l~i~~~~~~d~g~y~c~~~~~~g   87 (96)
                      +.|.+++..|.|.|.|.+.+..+
T Consensus        82 I~I~nv~~sD~G~Y~C~v~n~p~  104 (116)
T cd05879          82 IVIHNLDYTDNGTFTCDVKNPPD  104 (116)
T ss_pred             EEEccCCcccCEEEEEEEEcCCC
Confidence            99999999999999999998654

Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.

>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins

Probab=98.84  E-value=7.8e-08  Score=43.86  Aligned_cols=80  Identities=20%  Similarity=0.147  Sum_probs=47.7

Q ss_pred             CCcEEEEEEeeecccceeEEeeccceeEecc------cceEEEE---eccccceEEEEEEEccCCCCCCeeEEEEEecCC
Q psy4613          16 DTDVTLECYVEAYPKSINYWVRDQGDMVISS------ERYEVES---ISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSL   86 (96)
Q Consensus        16 g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~------~~~~~~~---~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~   86 (96)
                      |++++|.|.........+.|++.........      .......   ..+........|.|.+++..|+|.|.|.+....
T Consensus         1 G~~VtL~c~~~~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~sL~I~~l~~~DsG~Y~c~v~~~~   80 (92)
T cd05741           1 GESVTLPVSNLPENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYPNGSLLIQNLTKEDSGTYTLQIISTN   80 (92)
T ss_pred             CCcEEEEcccCCCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcCCceEEEccCCchhcEEEEEEEEcCC
Confidence            6789999988775666899988643211000      0000000   000000123679999999999999999998875


Q ss_pred             Cc-eEEEEEe
Q psy4613          87 GE-VESSIRL   95 (96)
Q Consensus        87 g~-~~~~~~l   95 (96)
                      +. ....+.|
T Consensus        81 ~~~~~~~~~l   90 (92)
T cd05741          81 GVTENAKFFL   90 (92)
T ss_pred             CcEEEEEEEE
Confidence            43 3444443

Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf

>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins

Probab=98.84  E-value=3.3e-07  Score=43.71  Aligned_cols=80  Identities=19%  Similarity=0.232  Sum_probs=48.1

Q ss_pred             CceeeecCCCcEEEEEEeeecc----cceeEEeeccc-----e-eEe-c--------ccceEEEE-eccccceEEEEEEE
Q psy4613           8 NQLVGAPIDTDVTLECYVEAYP----KSINYWVRDQG-----D-MVI-S--------SERYEVES-ISRSIFDFKMRLTI   67 (96)
Q Consensus         8 ~~~~~~~~g~~~~l~c~~~~~~----~~~~~w~~~~~-----~-~~~-~--------~~~~~~~~-~~~~~~~~~~~l~i   67 (96)
                      +..+.+..|+.++|.|.+....    ...+.|++...     . +.. .        ..++.... ...+.......|.|
T Consensus         5 p~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I   84 (116)
T cd05715           5 PREVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIVI   84 (116)
T ss_pred             CCeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEEE
Confidence            4556788999999999986532    24688976321     1 110 0        00110000 00001112367999


Q ss_pred             ccCCCCCCeeEEEEEecCCC
Q psy4613          68 KKITKYDLGSYKCIAKNSLG   87 (96)
Q Consensus        68 ~~~~~~d~g~y~c~~~~~~g   87 (96)
                      .+++..|.|.|.|.+.+...
T Consensus        85 ~~v~~~D~G~Y~C~v~~~~~  104 (116)
T cd05715          85 HNLQFTDNGTYTCDVKNPPD  104 (116)
T ss_pred             eeCCcccCEEEEEEEEeCCC
Confidence            99999999999999997544

Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2

>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA)

Probab=98.84  E-value=1.5e-07  Score=44.87  Aligned_cols=80  Identities=24%  Similarity=0.331  Sum_probs=48.3

Q ss_pred             CceeeecCCCcEEEEEEeeecc----cceeEEeecc---ce--eE-ec--------ccceEEEE-eccccceEEEEEEEc
Q psy4613           8 NQLVGAPIDTDVTLECYVEAYP----KSINYWVRDQ---GD--MV-IS--------SERYEVES-ISRSIFDFKMRLTIK   68 (96)
Q Consensus         8 ~~~~~~~~g~~~~l~c~~~~~~----~~~~~w~~~~---~~--~~-~~--------~~~~~~~~-~~~~~~~~~~~l~i~   68 (96)
                      +..+.+..|+++.|.|.+...+    ...+.|++..   ..  .. ..        ..++.... +..+.......|.|.
T Consensus         5 ~~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I~   84 (115)
T cd05880           5 SKEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILIW   84 (115)
T ss_pred             CceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEEe
Confidence            4567789999999999986533    2368997521   11  11 00        00110000 000111124569999


Q ss_pred             cCCCCCCeeEEEEEecCCC
Q psy4613          69 KITKYDLGSYKCIAKNSLG   87 (96)
Q Consensus        69 ~~~~~d~g~y~c~~~~~~g   87 (96)
                      +++..|+|.|.|.+.+..+
T Consensus        85 ~v~~~D~G~Y~C~v~~~~~  103 (115)
T cd05880          85 QLQPTDNGTYTCQVKNPPD  103 (115)
T ss_pred             eCChhhCEEEEEEEEeCCC
Confidence            9999999999999997544

Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.

>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4))

Probab=98.82  E-value=6.3e-08  Score=43.16  Aligned_cols=66  Identities=17%  Similarity=0.187  Sum_probs=45.5

Q ss_pred             EEEEEEee-ecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCc
Q psy4613          19 VTLECYVE-AYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGE   88 (96)
Q Consensus        19 ~~l~c~~~-~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~   88 (96)
                      +.|.|... +.|.+.+.||+++..+... ..   .......+...+.|.+......|.+.|.|.+.|..+.
T Consensus         2 ~~L~C~s~~skP~a~i~W~k~~~~l~~~-~~---~~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~   68 (80)
T cd05885           2 VELTCLSPRSKPAATLRWYRDRKELKGV-IS---QQENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALV   68 (80)
T ss_pred             EEEEEeCCCccCCCeEEEEECCEECCCC-cc---cccCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhC
Confidence            67899965 5678899999997766321 10   0011111224567888888888999999999998764

Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.

>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like

Probab=98.80  E-value=1.4e-07  Score=43.66  Aligned_cols=80  Identities=16%  Similarity=0.169  Sum_probs=48.7

Q ss_pred             cCCCcEEEEEEeee-cccceeEEeeccceeEecccc---eEEEEecc-----c-cceEEEEEEEccCCCCCCeeEEEEEe
Q psy4613          14 PIDTDVTLECYVEA-YPKSINYWVRDQGDMVISSER---YEVESISR-----S-IFDFKMRLTIKKITKYDLGSYKCIAK   83 (96)
Q Consensus        14 ~~g~~~~l~c~~~~-~~~~~~~w~~~~~~~~~~~~~---~~~~~~~~-----~-~~~~~~~l~i~~~~~~d~g~y~c~~~   83 (96)
                      ..|++++|.|.... .....+.|++...........   ........     . .......|.|.+++..|+|.|.|.+.
T Consensus         2 ~~G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~DsG~Y~c~v~   81 (97)
T cd05775           2 ILGGSVTLPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKMEDAGSYRAEIN   81 (97)
T ss_pred             ccCCeEEEeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchHHCEEEEEEEE
Confidence            36899999998755 445578899864333221110   00000000     0 00123679999999999999999998


Q ss_pred             cCCCce-EEEE
Q psy4613          84 NSLGEV-ESSI   93 (96)
Q Consensus        84 ~~~g~~-~~~~   93 (96)
                      ...|.. ...+
T Consensus        82 ~~~~~~~~~~f   92 (97)
T cd05775          82 TKNGVTITKEF   92 (97)
T ss_pred             cCCCCeEEEEE
Confidence            776643 3344

Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region

>PHA02785 IL-beta-binding protein; Provisional

Probab=98.80  E-value=7.4e-08  Score=53.44  Aligned_cols=71  Identities=24%  Similarity=0.186  Sum_probs=50.9

Q ss_pred             eecCCCcEEEEEEe-----eecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCC
Q psy4613          12 GAPIDTDVTLECYV-----EAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSL   86 (96)
Q Consensus        12 ~~~~g~~~~l~c~~-----~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~   86 (96)
                      .+..|+.+.+.|.+     .+.|.+.+.|++++....    +.....       ....+.|..+...|+|.|.|.+.|..
T Consensus        37 ~~~~ge~~~l~C~~~~~~~~g~p~~~i~W~K~g~~~~----~~~~~~-------~g~~l~i~~~~~~DsG~Y~C~a~N~~  105 (326)
T PHA02785         37 MELENEPVILPCPQINTLSSGYNILDILWEKRGADND----RIIPID-------NGSNMLILNPTQSDSGIYICITKNET  105 (326)
T ss_pred             hhhcCCCEEEECCCccccccCCCCceEEEEECCCccc----eEEEcc-------CCceEEEcccCcccCeEEEEEEECCC
Confidence            45679999999996     577888999999864211    111111       01246688899999999999999998


Q ss_pred             CceEEEE
Q psy4613          87 GEVESSI   93 (96)
Q Consensus        87 g~~~~~~   93 (96)
                      |....++
T Consensus       106 g~~~~s~  112 (326)
T PHA02785        106 YCDMMSL  112 (326)
T ss_pred             cceEEEE
Confidence            8665554

>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR)

Probab=98.77  E-value=4.2e-07  Score=41.99  Aligned_cols=73  Identities=18%  Similarity=0.268  Sum_probs=47.2

Q ss_pred             eeecCCCcEEEEEEeee-cccceeEEeeccce----eEe--------cccceEEEEeccccceEEEEEEEccCCCCCCee
Q psy4613          11 VGAPIDTDVTLECYVEA-YPKSINYWVRDQGD----MVI--------SSERYEVESISRSIFDFKMRLTIKKITKYDLGS   77 (96)
Q Consensus        11 ~~~~~g~~~~l~c~~~~-~~~~~~~w~~~~~~----~~~--------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~   77 (96)
                      +.+..|++++|.|.... .....+.|++....    .+.        ...++.+...   .......|.|.+++.+|+|.
T Consensus         2 v~~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~---~~~~~~~L~I~~v~~~DsG~   78 (98)
T cd05716           2 VTGELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDD---PDNGVFTVTLNQLRKEDAGW   78 (98)
T ss_pred             EEEEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEec---CCCCEEEEEEcCCCHHHCEE
Confidence            35778999999998765 34567899876421    110        0122222110   01134679999999999999


Q ss_pred             EEEEEecCC
Q psy4613          78 YKCIAKNSL   86 (96)
Q Consensus        78 y~c~~~~~~   86 (96)
                      |.|.+....
T Consensus        79 Y~C~~~~~~   87 (98)
T cd05716          79 YWCGVGDDG   87 (98)
T ss_pred             EEEEcccCC
Confidence            999987653

Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.

>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI

Probab=98.74  E-value=7.6e-07  Score=40.96  Aligned_cols=75  Identities=15%  Similarity=0.255  Sum_probs=49.2

Q ss_pred             CCeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEE
Q psy4613           1 HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKC   80 (96)
Q Consensus         1 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c   80 (96)
                      +|.+...+. ..+..|++++|.|.... ....+.|++++......    ......  .......+.|..++..|+|.|.|
T Consensus         1 kP~l~a~p~-~vV~~G~~VTL~C~~~~-~~~~f~l~k~g~~~~~~----~~~~~~--~~~~~a~f~I~~~~~~~~G~Y~C   72 (94)
T cd05711           1 KPFLSAHPS-PVVPSGENVTLQCHSDI-RFDRFILYKEGRSKPVL----HLYEKH--HGGFQASFPLGPVTPAHAGTYRC   72 (94)
T ss_pred             CCEEEecCC-CccCCCCeEEEEEecCC-CCCEEEEEECCCCCCce----eccccc--CCeEEEEEEecCCCcccCEEEEE
Confidence            467776664 44789999999997655 44578899886442110    000000  00123578999999999999999


Q ss_pred             EEe
Q psy4613          81 IAK   83 (96)
Q Consensus        81 ~~~   83 (96)
                      ...
T Consensus        73 ~~~   75 (94)
T cd05711          73 YGS   75 (94)
T ss_pred             EEE
Confidence            864

IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.

>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=98.74  E-value=9.8e-07  Score=40.69  Aligned_cols=77  Identities=21%  Similarity=0.297  Sum_probs=45.9

Q ss_pred             CcEEEEEEeeecc---cceeEEeeccce---eEe---cc------c--ceEEEEeccccceEEEEEEEccCCCCCCeeEE
Q psy4613          17 TDVTLECYVEAYP---KSINYWVRDQGD---MVI---SS------E--RYEVESISRSIFDFKMRLTIKKITKYDLGSYK   79 (96)
Q Consensus        17 ~~~~l~c~~~~~~---~~~~~w~~~~~~---~~~---~~------~--~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~   79 (96)
                      +++.|.|......   ...+.|++....   .+.   ..      +  +.+.. ...... ....|.|.+++..|+|.|.
T Consensus         1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~-~~~~~~-~~~sL~I~~v~~~D~G~Y~   78 (98)
T cd05718           1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVS-FLNSSL-EDATISISNLRLEDEGNYI   78 (98)
T ss_pred             CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEE-EeCCCC-CceEEEEccCCcccCEEEE
Confidence            3688999987644   347899986431   110   00      0  00110 000000 2467999999999999999


Q ss_pred             EEEec-CCCceEEEEEe
Q psy4613          80 CIAKN-SLGEVESSIRL   95 (96)
Q Consensus        80 c~~~~-~~g~~~~~~~l   95 (96)
                      |.+.. +.|.....+.|
T Consensus        79 C~v~~~~~g~~~~~~~l   95 (98)
T cd05718          79 CEFATFPQGNRQKVTTL   95 (98)
T ss_pred             EEEEeCCCCcEEEEEEE
Confidence            99864 56666655543

Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c

>KOG4194|consensus

Probab=98.74  E-value=4.7e-08  Score=57.65  Aligned_cols=83  Identities=22%  Similarity=0.361  Sum_probs=61.0

Q ss_pred             CeEEecCceeeecCCCcEEEEEEeeeccc-ceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEE
Q psy4613           2 PVIHVPNQLVGAPIDTDVTLECYVEAYPK-SINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKC   80 (96)
Q Consensus         2 p~~~~~~~~~~~~~g~~~~l~c~~~~~~~-~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c   80 (96)
                      |....|-....+..|..+.+.|.+.+.+. |.+.|+++++.+. ..++..+..       ....+.+......|.|.|.|
T Consensus       707 p~f~~PL~~~~V~~get~vlqC~a~~~~a~pr~~W~k~d~pil-~t~rh~f~d-------~dQllvv~~~~~~daG~yTc  778 (873)
T KOG4194|consen  707 PSFSIPLEDQLVVVGETLVLQCLAEGAPADPRLEWFKEDKPIL-ITERHTFPD-------GDQLLVVKENLVEDAGIYTC  778 (873)
T ss_pred             CcccccccceEEEecceEEEEEecCCCCCCccccccCCCCceE-EeecccCCC-------CCeEEEEEehhhhhcceEEE
Confidence            44445556677889999999999998776 8999999876654 233333332       23456777778899999999


Q ss_pred             EEecCCCceEEE
Q psy4613          81 IAKNSLGEVESS   92 (96)
Q Consensus        81 ~~~~~~g~~~~~   92 (96)
                      .+++..|.....
T Consensus       779 em~~~~~~~~~~  790 (873)
T KOG4194|consen  779 EMSNTLGTERIH  790 (873)
T ss_pred             EEEeeccceeeE
Confidence            999988765443

>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins)

Probab=98.70  E-value=1.3e-06  Score=41.87  Aligned_cols=76  Identities=14%  Similarity=0.122  Sum_probs=48.1

Q ss_pred             cCceeeecCCCcEEEEEEeeecc------cceeEEeeccce-----eEe--cc---------cceEEEEeccccceEEEE
Q psy4613           7 PNQLVGAPIDTDVTLECYVEAYP------KSINYWVRDQGD-----MVI--SS---------ERYEVESISRSIFDFKMR   64 (96)
Q Consensus         7 ~~~~~~~~~g~~~~l~c~~~~~~------~~~~~w~~~~~~-----~~~--~~---------~~~~~~~~~~~~~~~~~~   64 (96)
                      .+..+.+..|+.++|.|......      ...+.|++....     +..  ..         .|+....   +.......
T Consensus         5 ~P~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~---~~~~~~~s   81 (119)
T cd05712           5 MPKSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLG---DLGKKNCS   81 (119)
T ss_pred             CCCEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEec---CCCCCEEE
Confidence            35567899999999999876322      346889976321     110  00         1111100   11113467


Q ss_pred             EEEccCCCCCCeeEEEEEecC
Q psy4613          65 LTIKKITKYDLGSYKCIAKNS   85 (96)
Q Consensus        65 l~i~~~~~~d~g~y~c~~~~~   85 (96)
                      |.|.+++..|+|.|.|.++..
T Consensus        82 L~I~~l~~~Dsg~Y~C~~~~~  102 (119)
T cd05712          82 LLISDAQPEDSGKYFFRVELG  102 (119)
T ss_pred             EEEccCChhhCeEEEEEEEcC
Confidence            999999999999999998764

Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.

>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain

Probab=98.69  E-value=5.8e-07  Score=42.25  Aligned_cols=71  Identities=24%  Similarity=0.449  Sum_probs=44.6

Q ss_pred             eecCCCcEEEEEEeeec-ccceeEEeeccce-----e---E-ec------------ccceEEEEeccccceEEEEEEEcc
Q psy4613          12 GAPIDTDVTLECYVEAY-PKSINYWVRDQGD-----M---V-IS------------SERYEVESISRSIFDFKMRLTIKK   69 (96)
Q Consensus        12 ~~~~g~~~~l~c~~~~~-~~~~~~w~~~~~~-----~---~-~~------------~~~~~~~~~~~~~~~~~~~l~i~~   69 (96)
                      .+..|++++|.|..... ....+.|++....     +   . ..            .+++.+....   ......|.|.+
T Consensus         2 ~v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~---~~~~~~L~I~~   78 (107)
T cd07700           2 LVQTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTS---DSSRYRLHINR   78 (107)
T ss_pred             EEcCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEEC---CCCEEEEEECC
Confidence            47889999999998753 3457999975321     0   0 00            0111111000   00235699999


Q ss_pred             CCCCCCeeEEEEEecC
Q psy4613          70 ITKYDLGSYKCIAKNS   85 (96)
Q Consensus        70 ~~~~d~g~y~c~~~~~   85 (96)
                      ++.+|+|.|.|.....
T Consensus        79 ~~~~Dsg~YyCa~~~~   94 (107)
T cd07700          79 VKPEDSGTYFCMTVGS   94 (107)
T ss_pred             CCHHHCEEEEEeEcCC
Confidence            9999999999998643

IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.

>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan

Probab=98.69  E-value=1.9e-06  Score=40.77  Aligned_cols=33  Identities=15%  Similarity=0.443  Sum_probs=26.1

Q ss_pred             EEEEEEccCCCCCCeeEEEEEecCCCceEEEEE
Q psy4613          62 KMRLTIKKITKYDLGSYKCIAKNSLGEVESSIR   94 (96)
Q Consensus        62 ~~~l~i~~~~~~d~g~y~c~~~~~~g~~~~~~~   94 (96)
                      ..+|.|.+++..|.|.|.|.+..........+.
T Consensus        71 ~asL~i~nv~~~D~G~Y~C~v~~g~~~~~~~v~  103 (110)
T cd05902          71 NASLVLSRLRYSDSGTYRCEVVLGINDEQDTVP  103 (110)
T ss_pred             eEEEEECCCCHHHCEEEEEEEEECCcccEEEEE
Confidence            468999999999999999999886554444443

Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen

>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican

Probab=98.67  E-value=2.5e-06  Score=40.71  Aligned_cols=34  Identities=26%  Similarity=0.549  Sum_probs=28.0

Q ss_pred             EEEEEEccCCCCCCeeEEEEEecCCCceEEEEEe
Q psy4613          62 KMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL   95 (96)
Q Consensus        62 ~~~l~i~~~~~~d~g~y~c~~~~~~g~~~~~~~l   95 (96)
                      ..+|.|.+++..|.|.|.|.+..........+.|
T Consensus        78 ~asL~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L  111 (117)
T cd05901          78 DASLTIVKLRASDAGVYRCEVMHGIEDTQDTVSL  111 (117)
T ss_pred             ceEEEEcccccccCEEEEEEEEECCcccEEEEEE
Confidence            4779999999999999999999877766655543

Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA

>cd00098 IgC Immunoglobulin Constant domain

Probab=98.67  E-value=4.9e-07  Score=41.44  Aligned_cols=74  Identities=15%  Similarity=0.298  Sum_probs=47.1

Q ss_pred             cCCCcEEEEEEeeec-cc-ceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCC
Q psy4613          14 PIDTDVTLECYVEAY-PK-SINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLG   87 (96)
Q Consensus        14 ~~g~~~~l~c~~~~~-~~-~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g   87 (96)
                      ..|+.+.|.|.+.+. |. ..+.|++++...................+...+.|.+......+.+.|.|.+.+...
T Consensus        11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~~   86 (95)
T cd00098          11 LLGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHESL   86 (95)
T ss_pred             HcCCCeEEEEEEeeEECCCcEEEEEECCEECCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCC
Confidence            468899999999997 43 479999986554321110112222222333456676666666688899999988654

IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.

>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins

Probab=98.66  E-value=1.1e-06  Score=40.64  Aligned_cols=78  Identities=24%  Similarity=0.295  Sum_probs=44.4

Q ss_pred             CCcEEEEEEeeeccc-ceeEEeeccce---eEe-c----c----cceEEEEeccccceEEEEEEEccCCCCCCeeEEEEE
Q psy4613          16 DTDVTLECYVEAYPK-SINYWVRDQGD---MVI-S----S----ERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIA   82 (96)
Q Consensus        16 g~~~~l~c~~~~~~~-~~~~w~~~~~~---~~~-~----~----~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~   82 (96)
                      |++++|.|....... ..+.|++....   .+. .    .    ..+.-.............|.|.+++..|+|.|.|.+
T Consensus         1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv~~~D~G~Y~C~~   80 (97)
T cd05846           1 GGNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNVTLEDEGCYKCIF   80 (97)
T ss_pred             CCcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCCceeeeEEEEEEE
Confidence            678999998665433 36889875321   110 0    0    011000000000012467999999999999999997


Q ss_pred             ec-CCCceEEEE
Q psy4613          83 KN-SLGEVESSI   93 (96)
Q Consensus        83 ~~-~~g~~~~~~   93 (96)
                      .. +.|.....+
T Consensus        81 ~~~p~g~~~~~~   92 (97)
T cd05846          81 NTFPDGSKSGTM   92 (97)
T ss_pred             EeCCCCCeeeEE
Confidence            74 556554444

Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.

>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain

Probab=98.66  E-value=6.2e-07  Score=41.99  Aligned_cols=72  Identities=22%  Similarity=0.277  Sum_probs=44.0

Q ss_pred             ecCCCcEEEEEEeeecccceeEEeeccce----e--Ee-c-c-cceE-EE------EeccccceEEEEEEEccCCCCCCe
Q psy4613          13 APIDTDVTLECYVEAYPKSINYWVRDQGD----M--VI-S-S-ERYE-VE------SISRSIFDFKMRLTIKKITKYDLG   76 (96)
Q Consensus        13 ~~~g~~~~l~c~~~~~~~~~~~w~~~~~~----~--~~-~-~-~~~~-~~------~~~~~~~~~~~~l~i~~~~~~d~g   76 (96)
                      +..|++++|.|.........+.|++....    +  +. . . .... ..      ............|.|.+++.+|+|
T Consensus         3 v~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~sDsg   82 (104)
T cd05720           3 AELGQKVELKCEVLNSSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSSNSFVLTLKNFQKENEG   82 (104)
T ss_pred             ccCCCeEEEEEEecCCCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecCCEEEEEECCCCHHHCE
Confidence            57899999999876555567899986422    1  11 0 0 0000 00      000000013456999999999999


Q ss_pred             eEEEEEec
Q psy4613          77 SYKCIAKN   84 (96)
Q Consensus        77 ~y~c~~~~   84 (96)
                      .|.|....
T Consensus        83 tY~Ca~~~   90 (104)
T cd05720          83 YYFCSVAS   90 (104)
T ss_pred             EEEEEEcc
Confidence            99999874

Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.

>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=98.62  E-value=1.3e-06  Score=41.05  Aligned_cols=75  Identities=15%  Similarity=0.055  Sum_probs=45.3

Q ss_pred             eecCCCcEEEEEEeeecccceeEEeeccce-----eEe--cccceEE---EEeccccceEEEEEEEccCCCCCCeeEEEE
Q psy4613          12 GAPIDTDVTLECYVEAYPKSINYWVRDQGD-----MVI--SSERYEV---ESISRSIFDFKMRLTIKKITKYDLGSYKCI   81 (96)
Q Consensus        12 ~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~-----~~~--~~~~~~~---~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~   81 (96)
                      .+..|+++.|.|.........+.|++....     +..  .......   ....+.....+.+|.|.+++..|.|.|.|.
T Consensus         9 ~~~~G~~V~L~v~~~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~ngSL~I~~v~~~D~G~Y~~~   88 (105)
T cd05774           9 QVAEGENVLLLVHNLPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYPNGSLLIQNVTQKDTGFYTLQ   88 (105)
T ss_pred             cccCCCCEEEEecCCCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeCCCcEEEecCCcccCEEEEEE
Confidence            467899999999754444448899985211     110  0000000   000000001246799999999999999999


Q ss_pred             EecCC
Q psy4613          82 AKNSL   86 (96)
Q Consensus        82 ~~~~~   86 (96)
                      +.+..
T Consensus        89 v~~~~   93 (105)
T cd05774          89 TITTN   93 (105)
T ss_pred             EEeCC
Confidence            98865

IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D

>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins

Probab=98.62  E-value=3.2e-06  Score=39.32  Aligned_cols=34  Identities=26%  Similarity=0.474  Sum_probs=26.7

Q ss_pred             EEEEEEccCCCCCCeeEEEEEec-CCCceEEEEEe
Q psy4613          62 KMRLTIKKITKYDLGSYKCIAKN-SLGEVESSIRL   95 (96)
Q Consensus        62 ~~~l~i~~~~~~d~g~y~c~~~~-~~g~~~~~~~l   95 (96)
                      ...|.|.+++..|+|.|.|.+.+ +.|.....+.|
T Consensus        63 ~~sL~I~nv~~sD~GtY~C~v~~~p~g~~~~~~~L   97 (100)
T cd05888          63 DGALILRNAVQADEGKYKCRVITFPAGNFEAELVL   97 (100)
T ss_pred             ceEEEEecCccccceEEEEEEEeCCCCCeeeEEEE
Confidence            45699999999999999999986 66665544443

Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult

>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively)

Probab=98.58  E-value=1.8e-06  Score=38.71  Aligned_cols=68  Identities=15%  Similarity=0.218  Sum_probs=40.7

Q ss_pred             EEEEEEeeec-ccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCc
Q psy4613          19 VTLECYVEAY-PKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGE   88 (96)
Q Consensus        19 ~~l~c~~~~~-~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~   88 (96)
                      +.|.|.+.+. |.+.+.|++++..+.. .. ..........+...+.+.+......+...|.|.+.+....
T Consensus         2 ~~L~C~~~~~~P~~~v~W~~~~~~l~~-~~-~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l~   70 (82)
T cd05761           2 VELTCTSSGSKPAATIRWFKGDKELKG-VK-LKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPALK   70 (82)
T ss_pred             EEEEEEecCcCcCCeEEEEECCEEccC-ce-eeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhcC
Confidence            5789998764 7789999998765431 11 1111111112334455666555555566999999986443

Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel

>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=98.56  E-value=4.4e-06  Score=37.87  Aligned_cols=85  Identities=24%  Similarity=0.346  Sum_probs=49.1

Q ss_pred             CeEEecCceeeecCCCcEEEEEEee-ecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEE
Q psy4613           2 PVIHVPNQLVGAPIDTDVTLECYVE-AYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKC   80 (96)
Q Consensus         2 p~~~~~~~~~~~~~g~~~~l~c~~~-~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c   80 (96)
                      |.|......+... ++.+.+.|.+. +.|.+.+.|+.++...... ............+...+.|.+......+...+.|
T Consensus         1 p~I~~~~~~~~~~-~~~~~~~C~s~~~~P~~~i~W~~~~~~~~~~-~~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C   78 (89)
T PF08205_consen    1 PEITPNPSLLEGE-GEEVTLTCSSSGGYPPPQITWYLDGGPVVAS-NTTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTC   78 (89)
T ss_dssp             EEEEEECSEEESS-TEEEEEEEEEEEEBS-EEEEEEETTCEECEE-EEEEEEETTTTTEEEEEEEEEETTGGGTTEEEEE
T ss_pred             CEeeCCCeeEccc-ceEEEEEEEeCCeECCeEEEEEECCCceeee-eeeeeeccCCCcceEEEEEEEEcChHHCCeEEEE
Confidence            4455554334333 78999999754 6788899999887655111 0111111111222244667776555555668999


Q ss_pred             EEecCCCc
Q psy4613          81 IAKNSLGE   88 (96)
Q Consensus        81 ~~~~~~g~   88 (96)
                      .+.+..-.
T Consensus        79 ~~~~~~~~   86 (89)
T PF08205_consen   79 RASHPALS   86 (89)
T ss_dssp             EEEETTCC
T ss_pred             EEECCccC
Confidence            99886543

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....

>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain

Probab=98.56  E-value=3.1e-06  Score=40.46  Aligned_cols=73  Identities=15%  Similarity=0.215  Sum_probs=45.9

Q ss_pred             ceeeecCCCcEEEEEEeeecc--cceeEEeeccc----eeEe---c-----------ccceEEEEeccccceEEEEEEEc
Q psy4613           9 QLVGAPIDTDVTLECYVEAYP--KSINYWVRDQG----DMVI---S-----------SERYEVESISRSIFDFKMRLTIK   68 (96)
Q Consensus         9 ~~~~~~~g~~~~l~c~~~~~~--~~~~~w~~~~~----~~~~---~-----------~~~~~~~~~~~~~~~~~~~l~i~   68 (96)
                      ..+.+..|++++|.|......  ...+.|++...    .++.   .           .+++.....   .......|.|.
T Consensus         5 ~~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~---~~~~~~~L~I~   81 (117)
T cd04981           5 GPGLVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRD---TSKSTVYLQLN   81 (117)
T ss_pred             CCeEEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEE---ccCCEEEEEEC
Confidence            456688999999999876533  45789997532    1110   0           011111100   00012469999


Q ss_pred             cCCCCCCeeEEEEEec
Q psy4613          69 KITKYDLGSYKCIAKN   84 (96)
Q Consensus        69 ~~~~~d~g~y~c~~~~   84 (96)
                      +++.+|+|.|.|....
T Consensus        82 ~~~~~Dsa~YyCa~~~   97 (117)
T cd04981          82 SLTPEDTAVYYCARGL   97 (117)
T ss_pred             CCCHHHCEEEEEEEEc
Confidence            9999999999999875

IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.

>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain

Probab=98.56  E-value=5.3e-06  Score=40.78  Aligned_cols=85  Identities=18%  Similarity=0.264  Sum_probs=47.3

Q ss_pred             CeEEecCceeeecCCCcEEEEEEeeec-cc-ceeEEeeccceeEe---cccce---EEEEeccccceEEEEEEEccCCCC
Q psy4613           2 PVIHVPNQLVGAPIDTDVTLECYVEAY-PK-SINYWVRDQGDMVI---SSERY---EVESISRSIFDFKMRLTIKKITKY   73 (96)
Q Consensus         2 p~~~~~~~~~~~~~g~~~~l~c~~~~~-~~-~~~~w~~~~~~~~~---~~~~~---~~~~~~~~~~~~~~~l~i~~~~~~   73 (96)
                      |.+...+.......|+.+.|.|.+.+. |. ..+.|++++.....   .....   ......+..+...+.|.+......
T Consensus        39 P~v~~~~~~~~~~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~  118 (139)
T cd05771          39 PRVRLSLEKLVSMIEEPQTLICHIAGYYPLDVQVEWTREPPGDSPPPVSLSNVSFSSHRQHQDGTYSLSSHLTLEPGTED  118 (139)
T ss_pred             CceEEeCCCceeecCCcEEEEEEECCCCCCCeEEEEEECCCCCccceeccCCeEecceEeCCCCCEEEEEEEEecCCccC
Confidence            344333333333467889999999985 43 37899998643110   00011   111122233445566776655544


Q ss_pred             CCeeEEEEEecCC
Q psy4613          74 DLGSYKCIAKNSL   86 (96)
Q Consensus        74 d~g~y~c~~~~~~   86 (96)
                      +...|.|.+....
T Consensus       119 ~g~~ytC~V~H~~  131 (139)
T cd05771         119 AGATYTCRVSHVS  131 (139)
T ss_pred             CCCEEEEEEEcCC
Confidence            5569999998753

IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.

>KOG4222|consensus

Probab=98.53  E-value=3.3e-07  Score=57.16  Aligned_cols=74  Identities=28%  Similarity=0.425  Sum_probs=56.4

Q ss_pred             ceeeecCCCcEEEEEE-eeecccceeEEeeccceeEecc-cceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCC
Q psy4613           9 QLVGAPIDTDVTLECY-VEAYPKSINYWVRDQGDMVISS-ERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSL   86 (96)
Q Consensus         9 ~~~~~~~g~~~~l~c~-~~~~~~~~~~w~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~   86 (96)
                      ..+.+..|+.+.+.|. ..+.+.+.+.|.+++..+.... +...+.        ....|.|.++++.|.|.|.|.+.|..
T Consensus       139 rd~~~a~ge~avlEcgpP~ghpeptvSw~Kdg~pl~~~~~~~~~li--------sgG~LlIsnvrksD~GtY~CVatNmv  210 (1281)
T KOG4222|consen  139 RDVQAAVGEEAVLECGPPRGHPEPTVSWVKDGKPLDHYDVPIIALI--------SGGNLLISNVRKSDEGTYACVATNMV  210 (1281)
T ss_pred             ccccccccceeEEeccCCCCCCCCcceeecCCCccccccceeEEEe--------cCCcEEEeccccCCCceeeeeecccc
Confidence            4466778999999998 4678899999999987765322 222222        23668999999999999999999988


Q ss_pred             CceE
Q psy4613          87 GEVE   90 (96)
Q Consensus        87 g~~~   90 (96)
                      |.+.
T Consensus       211 G~Re  214 (1281)
T KOG4222|consen  211 GERE  214 (1281)
T ss_pred             cccc
Confidence            8643

>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4

Probab=98.52  E-value=3.9e-06  Score=37.87  Aligned_cols=62  Identities=16%  Similarity=0.155  Sum_probs=44.8

Q ss_pred             eecCCCcEEEEEEeeecccc--eeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecC
Q psy4613          12 GAPIDTDVTLECYVEAYPKS--INYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNS   85 (96)
Q Consensus        12 ~~~~g~~~~l~c~~~~~~~~--~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~   85 (96)
                      ....|++++|.|.....+.|  .+.|...+.....+..     .       ...+|.+..+...|+|.+.|.+...
T Consensus        10 ~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~~~~~-----~-------~~ktL~~~qv~~qdSG~WtC~V~~~   73 (88)
T cd07694          10 HVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSKQILN-----Q-------DKKTLNLVQLGPNDSGTWDCIVSVN   73 (88)
T ss_pred             eeecCCcEEEEEecCCCCCCCccEEEeCCCCccceecc-----C-------CccEEEeceeCcccCCEEEEEEEEC
Confidence            46789999999998665555  8999876543321100     0       2367888999999999999999754

Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=98.50  E-value=7.7e-06  Score=37.52  Aligned_cols=68  Identities=25%  Similarity=0.430  Sum_probs=39.3

Q ss_pred             CCcEEEEEEeeec-ccc-eeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCC
Q psy4613          16 DTDVTLECYVEAY-PKS-INYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSL   86 (96)
Q Consensus        16 g~~~~l~c~~~~~-~~~-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~   86 (96)
                      ++.+.|.|.+.+. |.. .+.|.+++...................+...+.|.+...   +...|.|.+....
T Consensus        14 ~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s~l~v~~~---~~~~ytC~V~H~~   83 (93)
T cd07698          14 DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQLWVTLEVPPE---DKARYSCRVEHSG   83 (93)
T ss_pred             CCcEEEEEEEEEEeCCCcEEEEEECCEECcccccccceEECCCCeEEEEEEEEECCC---CCCEEEEEEEeCC
Confidence            6789999999995 443 789999864222111111112222223333445555443   5679999998754

IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.

>cd00096 Ig Immunoglobulin domain

Probab=98.49  E-value=5.3e-06  Score=35.07  Aligned_cols=66  Identities=30%  Similarity=0.411  Sum_probs=42.4

Q ss_pred             EEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCC
Q psy4613          19 VTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSL   86 (96)
Q Consensus        19 ~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~   86 (96)
                      +.+.|.+.+.+...+.|++.+.........  ..............+.+..++..|.|.|.|.+.+..
T Consensus         1 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~   66 (74)
T cd00096           1 VTLTCLASGPPPPTITWLKNGKPLPSSVLT--RVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSA   66 (74)
T ss_pred             CEEEEEecCCCCCcEEEEECCEECCCcccE--EeccccCcceeEEEEEECccCcccCcEEEEEEecCc
Confidence            367899888677789999875443211100  000111112245778899999999999999988765

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=98.48  E-value=5.6e-06  Score=37.12  Aligned_cols=66  Identities=18%  Similarity=0.301  Sum_probs=42.4

Q ss_pred             EEEEEEeee-cccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCC
Q psy4613          19 VTLECYVEA-YPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLG   87 (96)
Q Consensus        19 ~~l~c~~~~-~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g   87 (96)
                      +.|.|...+ .|.+.+.|++++..+...  .. ........+...+.|.+..-...|...|.|.+.+..-
T Consensus         2 ~~L~C~s~gSkP~A~I~W~k~~~~l~~~--~~-~~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~l   68 (82)
T cd05883           2 IELNCTAMASKPAATIRWFKGNKELTGK--ST-VEETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPAV   68 (82)
T ss_pred             EEEEEEecCCCCCCEEEEEECCEECcCc--cc-ceeccCCCcEEEEEEEEECchhhCCCEEEEEEcCccc
Confidence            678999765 577799999987665421  11 0111112233557787766666666799999988653

Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.

>PHA02987 Ig domain OX-2-like protein; Provisional

Probab=98.47  E-value=9.8e-06  Score=41.48  Aligned_cols=72  Identities=18%  Similarity=0.356  Sum_probs=48.0

Q ss_pred             ceeeecCCCcEEEEEEee-ecccceeEEeeccceeEec-----------ccceEEEEeccccceEEEEEEEccCCCCCCe
Q psy4613           9 QLVGAPIDTDVTLECYVE-AYPKSINYWVRDQGDMVIS-----------SERYEVESISRSIFDFKMRLTIKKITKYDLG   76 (96)
Q Consensus         9 ~~~~~~~g~~~~l~c~~~-~~~~~~~~w~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g   76 (96)
                      ..+.+.+|+++.|.|... +...+.+.|.+........           ..|..+.  ..+.  ....+.|.+++.+|+|
T Consensus        23 ~~v~V~ege~VtLsCs~t~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~m--S~s~--~~StItIknVt~sDeG   98 (189)
T PHA02987         23 VKITVSEHVNVKISCNKTSSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYL--SKSF--NESTILIKNVSLKDNG   98 (189)
T ss_pred             EEEEEcCCCCEEEEEecCCCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEe--ccCC--CcceEEEEeCChhhCe
Confidence            356789999999999975 5567789998864322110           0111110  0000  2477999999999999


Q ss_pred             eEEEEEec
Q psy4613          77 SYKCIAKN   84 (96)
Q Consensus        77 ~y~c~~~~   84 (96)
                      .|.|...-
T Consensus        99 cY~C~F~t  106 (189)
T PHA02987         99 CYTCIFNT  106 (189)
T ss_pred             EEEEEEEe
Confidence            99999764

>KOG4222|consensus

Probab=98.46  E-value=2.5e-07  Score=57.64  Aligned_cols=81  Identities=23%  Similarity=0.461  Sum_probs=62.5

Q ss_pred             CeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEE
Q psy4613           2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCI   81 (96)
Q Consensus         2 p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~   81 (96)
                      |.+..++....+..|..+.+.|.+.+.|.|.+.|.+.+..+  ...++.+..       ...++.|.++...|.|.|.|.
T Consensus       226 P~f~~rp~~~~v~~g~~~~f~c~v~GdP~P~Vrwkk~~~~~--P~~ry~i~~-------d~qtl~i~r~tp~deg~y~C~  296 (1281)
T KOG4222|consen  226 PWFWKRPKDLAVLVGAAAEFDCRVGGDPQPTVRWKKDDPSL--PRSRYSILD-------DTQTLRIDRVTPTDEGTYVCP  296 (1281)
T ss_pred             CccccccccceeecccccccccccCCCCCCceeeeccCCCC--Cccceeeee-------ccccccccccCCCcccceeee
Confidence            33444556677888999999999999999999998865544  345555544       336789999999999999999


Q ss_pred             EecCCCceEE
Q psy4613          82 AKNSLGEVES   91 (96)
Q Consensus        82 ~~~~~g~~~~   91 (96)
                      +.|..|....
T Consensus       297 a~n~vG~l~a  306 (1281)
T KOG4222|consen  297 AENLVGGLEA  306 (1281)
T ss_pred             cccccccccc
Confidence            9998876543

>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=98.39  E-value=1.5e-05  Score=35.81  Aligned_cols=67  Identities=12%  Similarity=0.161  Sum_probs=41.8

Q ss_pred             EEEEEEeeec-ccceeEEeeccceeEecccceEEEEecc-ccceEEEEEEEccCCCCCCeeEEEEEecCCC
Q psy4613          19 VTLECYVEAY-PKSINYWVRDQGDMVISSERYEVESISR-SIFDFKMRLTIKKITKYDLGSYKCIAKNSLG   87 (96)
Q Consensus        19 ~~l~c~~~~~-~~~~~~w~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g   87 (96)
                      +.|.|.+.+. |.+.+.|++++..+...  ......... ..+...+.+.+......+...|.|.+.+...
T Consensus         2 ~~LtC~a~g~~P~~~ItW~k~g~~l~~~--~~~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l   70 (83)
T cd07705           2 AKLRCTSSGSKPAANIKWRKGDQELEGA--PTSVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESL   70 (83)
T ss_pred             EEEEEEecCccCCCEeEEEECCEECCCc--ceeEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECccc
Confidence            6789998874 77899999987554311  111211111 1333456666655566666799999998654

Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel

>KOG4221|consensus

Probab=98.39  E-value=1.2e-07  Score=59.28  Aligned_cols=83  Identities=24%  Similarity=0.427  Sum_probs=62.0

Q ss_pred             CeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEE
Q psy4613           2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCI   81 (96)
Q Consensus         2 p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~   81 (96)
                      |.+...+..+.+-.+..+.+.|...+.|.+.+.|++++...+. .+.+.+..        ...+.|..+-..|.|.|+|.
T Consensus       329 P~~~~~p~~l~A~e~~die~ec~~~g~p~p~v~w~kNgd~~ip-sdy~ki~~--------~~~lrIlgi~~sdeg~yQcv  399 (1381)
T KOG4221|consen  329 PGFTKAPTTLVAHESMDIEFECPVSGKPIPTVRWYKNGDRIIP-SDYFKIVG--------GGNLRILGIVKSDEGFYQCV  399 (1381)
T ss_pred             CCCCCCCcceeeeeccceeEeCCCCCCCcceEEEEecCcccCc-ccceEecC--------CCCcEEEEEecccchhhhhh
Confidence            4444445556677799999999999999999999999766653 44444332        12277888888999999999


Q ss_pred             EecCCCceEEEE
Q psy4613          82 AKNSLGEVESSI   93 (96)
Q Consensus        82 ~~~~~g~~~~~~   93 (96)
                      +.|..|......
T Consensus       400 aen~~G~a~a~a  411 (1381)
T KOG4221|consen  400 AENDAGSAQAAA  411 (1381)
T ss_pred             hccCcccccchh
Confidence            999988766543

>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=98.38  E-value=2e-05  Score=36.67  Aligned_cols=79  Identities=15%  Similarity=0.202  Sum_probs=47.0

Q ss_pred             ecCceeeecCCCcEEEEEEeee-cccce--eEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEE
Q psy4613           6 VPNQLVGAPIDTDVTLECYVEA-YPKSI--NYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIA   82 (96)
Q Consensus         6 ~~~~~~~~~~g~~~~l~c~~~~-~~~~~--~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~   82 (96)
                      ..+....+.+|+.++|.|.+.+ .|.+.  +.|++.+..+...  ....  ..........++.+...+..|...|.|.+
T Consensus         6 l~~~p~~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~--~~~~--~~~~~~~~~stlt~~~~r~D~g~~~sC~A   81 (100)
T cd05755           6 LSPLPSWQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQ--PFGD--NTKSPVNAPATITITVDREDHGANFSCET   81 (100)
T ss_pred             EecCCCcccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccc--eecc--ccCCCceeEEEEEEecchhhCCcEEEEEE
Confidence            3334445689999999999876 45555  6999986555321  1110  00011113456666655444455999999


Q ss_pred             ecCCCc
Q psy4613          83 KNSLGE   88 (96)
Q Consensus        83 ~~~~g~   88 (96)
                      ....+.
T Consensus        82 ~l~l~~   87 (100)
T cd05755          82 ELDLRP   87 (100)
T ss_pred             EeccCc
Confidence            976543

Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.

>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=98.37  E-value=1.4e-05  Score=35.91  Aligned_cols=67  Identities=15%  Similarity=0.259  Sum_probs=40.1

Q ss_pred             EEEEEEeee-cccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCC
Q psy4613          19 VTLECYVEA-YPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSL   86 (96)
Q Consensus        19 ~~l~c~~~~-~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~   86 (96)
                      +.|.|.+.+ .|...+.|++++..+. ..............+...+.+.+......+...|.|.+.+..
T Consensus         2 ~~LtC~a~gf~P~~~itW~kng~~l~-~~~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~   69 (83)
T cd05884           2 MQLTCKTSGSKPAADIRWFKNDKEIK-DVKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHES   69 (83)
T ss_pred             EEEEEEeCCccCCCEEEEEECCEECc-CceeeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechh
Confidence            578999887 5566889999876642 111111111111233345667766555555669999998754

Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.

>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins

Probab=98.30  E-value=3.2e-05  Score=35.76  Aligned_cols=34  Identities=26%  Similarity=0.473  Sum_probs=28.3

Q ss_pred             EEEEEEccCCCCCCeeEEEEEe-cCCCceEEEEEe
Q psy4613          62 KMRLTIKKITKYDLGSYKCIAK-NSLGEVESSIRL   95 (96)
Q Consensus        62 ~~~l~i~~~~~~d~g~y~c~~~-~~~g~~~~~~~l   95 (96)
                      ..++.|.+++..|.|.|.|.+. .+.|...++..|
T Consensus        59 d~sl~i~nv~~~D~G~Y~C~v~tfP~G~~~~~~~l   93 (96)
T cd05887          59 DATIMLENVGFSDIGVYICKAVTFPLGNTQSSTTV   93 (96)
T ss_pred             ccEEEEeCCCccccEEEEEEEEeCCCCCeeEEEEE
Confidence            4679999999999999999975 578887777654

Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also

>smart00407 IGc1 Immunoglobulin C-Type

Probab=98.29  E-value=2.8e-05  Score=34.25  Aligned_cols=67  Identities=19%  Similarity=0.320  Sum_probs=39.3

Q ss_pred             EEEEEEeeec-cc-ceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecC
Q psy4613          19 VTLECYVEAY-PK-SINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNS   85 (96)
Q Consensus        19 ~~l~c~~~~~-~~-~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~   85 (96)
                      ++|.|.+.+. |. ..+.|++++...................+...+.|.+......+...|.|.+...
T Consensus         2 ~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~   70 (75)
T smart00407        2 ATLVCLVSGFYPPDITVTWLRNGQEVTSGVSTTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHE   70 (75)
T ss_pred             eEEEEEEEeEeCCCCEEEEEECCEECCCCEEECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEc
Confidence            5789999985 43 4789999865432111111111122234445566777665555666999998764

>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins

Probab=98.28  E-value=3.8e-05  Score=35.73  Aligned_cols=33  Identities=24%  Similarity=0.421  Sum_probs=27.4

Q ss_pred             EEEEEccCCCCCCeeEEEEEec-CCCceEEEEEe
Q psy4613          63 MRLTIKKITKYDLGSYKCIAKN-SLGEVESSIRL   95 (96)
Q Consensus        63 ~~l~i~~~~~~d~g~y~c~~~~-~~g~~~~~~~l   95 (96)
                      .++.|.+++..|.|.|.|.+.+ +.|.....+.|
T Consensus        63 aSi~i~nl~~~D~G~Y~C~v~t~P~g~~~~~~~L   96 (99)
T cd05886          63 GTISLSRLELEDEGVYICEFATFPTGNRESQLNL   96 (99)
T ss_pred             ceEEEcCCccccCEEEEEEEEeCCCCCeEEEEEE
Confidence            6799999999999999999998 67766555544

Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is

>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins

Probab=98.24  E-value=4.7e-05  Score=35.23  Aligned_cols=34  Identities=29%  Similarity=0.473  Sum_probs=27.6

Q ss_pred             EEEEEEccCCCCCCeeEEEEEec-CCCceEEEEEe
Q psy4613          62 KMRLTIKKITKYDLGSYKCIAKN-SLGEVESSIRL   95 (96)
Q Consensus        62 ~~~l~i~~~~~~d~g~y~c~~~~-~~g~~~~~~~l   95 (96)
                      ..++.|.+++..|.|.|.|.+.. +.|...+.+.+
T Consensus        59 d~sI~i~nvt~~D~G~Y~C~~~t~P~g~~~~~i~~   93 (96)
T cd05889          59 DMSLSFNNATEEDVGLYCCSLVTYPQGSWEKVIEV   93 (96)
T ss_pred             ccEEEEcCCCcccCEEEEEEEEeCCCCCeEEEEEE
Confidence            46789999999999999999864 67777766543

Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.

>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE)

Probab=98.22  E-value=5.3e-05  Score=34.91  Aligned_cols=74  Identities=14%  Similarity=0.212  Sum_probs=41.5

Q ss_pred             CCCcEEEEEEeeecccc--eeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCc
Q psy4613          15 IDTDVTLECYVEAYPKS--INYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGE   88 (96)
Q Consensus        15 ~g~~~~l~c~~~~~~~~--~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~   88 (96)
                      ....+.|.|.+.+.-++  .+.|.+++...................+...+.|.+..-.-.+...|.|.+......
T Consensus        13 ~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~H~~~~   88 (94)
T cd05847          13 TSETIQLLCLISGYTPGTIEVEWLVDGQVATLVAASTAPQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVTHQGTT   88 (94)
T ss_pred             CCCCEEEEEEEEeEECCCCEEEEEECCEECcCceeecccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEEECCee
Confidence            45668999999985443  678998865532111111111112224445566666544333445899999875443

IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.

>cd07699 IgC_L Immunoglobulin Constant domain

Probab=98.21  E-value=2.5e-05  Score=36.36  Aligned_cols=85  Identities=16%  Similarity=0.248  Sum_probs=46.6

Q ss_pred             CeEE-ecCceeeecCCCcEEEEEEeeeccc--ceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeE
Q psy4613           2 PVIH-VPNQLVGAPIDTDVTLECYVEAYPK--SINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSY   78 (96)
Q Consensus         2 p~~~-~~~~~~~~~~g~~~~l~c~~~~~~~--~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y   78 (96)
                      |.+. .++.......++.++|.|.+.+..+  -.+.|++++................+..|...+.|.+..-.-.+...|
T Consensus         2 P~V~v~~p~~~~~~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~~   81 (100)
T cd07699           2 PSVTIFPPSSEELEKSGKATLVCLINDFYPGFATVQWKVDGATVSSGVQTSTTEQQSDNTYSLSSYLTLTKSDWNKHKVY   81 (100)
T ss_pred             CeEEEECCCHHHHccCCCcEEEEEEEeEECCCCEEEEEECCEECcccEeccccEECCCCCEEEEEEEEEcHHHhCCCCeE
Confidence            4443 3333333445778999999988443  368899987554211110111111123444455665554443345589


Q ss_pred             EEEEecCC
Q psy4613          79 KCIAKNSL   86 (96)
Q Consensus        79 ~c~~~~~~   86 (96)
                      .|.+....
T Consensus        82 sC~V~H~~   89 (100)
T cd07699          82 TCEVTHEG   89 (100)
T ss_pred             EEEEEecC
Confidence            99998654

IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>PHA03376 BARF1; Provisional

Probab=98.17  E-value=0.00011  Score=37.95  Aligned_cols=78  Identities=17%  Similarity=0.069  Sum_probs=47.0

Q ss_pred             eeeecCCCcEEEEEEeee---cccceeEEeecc----ceeEe-cccceEEEEe-----ccc-cceEEEEEEEccCCCCCC
Q psy4613          10 LVGAPIDTDVTLECYVEA---YPKSINYWVRDQ----GDMVI-SSERYEVESI-----SRS-IFDFKMRLTIKKITKYDL   75 (96)
Q Consensus        10 ~~~~~~g~~~~l~c~~~~---~~~~~~~w~~~~----~~~~~-~~~~~~~~~~-----~~~-~~~~~~~l~i~~~~~~d~   75 (96)
                      .+.+.+|+.+.|.|....   ...-.++|++.+    ..... ........+.     ... ....+.+|.|.+++.+|.
T Consensus        20 pVta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~gnvsLvI~~l~lSDd   99 (221)
T PHA03376         20 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHD   99 (221)
T ss_pred             chhheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecCCeEEEEEEeeeecCC
Confidence            456788999999998763   233478899842    22221 1111000000     000 001357899999999999


Q ss_pred             eeEEEEEecCCC
Q psy4613          76 GSYKCIAKNSLG   87 (96)
Q Consensus        76 g~y~c~~~~~~g   87 (96)
                      |.|.|.+.....
T Consensus       100 GtY~C~fQkge~  111 (221)
T PHA03376        100 GNYLCRMKLGET  111 (221)
T ss_pred             ceEEEEEEcCCC
Confidence            999999887543

>smart00406 IGv Immunoglobulin V-Type

Probab=98.10  E-value=4.3e-05  Score=33.69  Aligned_cols=20  Identities=35%  Similarity=0.657  Sum_probs=18.1

Q ss_pred             EEEEEEccCCCCCCeeEEEE
Q psy4613          62 KMRLTIKKITKYDLGSYKCI   81 (96)
Q Consensus        62 ~~~l~i~~~~~~d~g~y~c~   81 (96)
                      ...|.|.+++..|.|.|.|.
T Consensus        61 ~~~L~i~~~~~~D~G~Y~C~   80 (81)
T smart00406       61 DVSLTISNLRVEDTGTYYCA   80 (81)
T ss_pred             EEEEEEcCCCHHHCEEEEEc
Confidence            46799999999999999996

>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=98.02  E-value=0.00017  Score=33.23  Aligned_cols=70  Identities=14%  Similarity=0.180  Sum_probs=40.6

Q ss_pred             cCCCcEEEEEEeeecccc--eeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCC
Q psy4613          14 PIDTDVTLECYVEAYPKS--INYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSL   86 (96)
Q Consensus        14 ~~g~~~~l~c~~~~~~~~--~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~   86 (96)
                      ..+...+|.|.+.+.-+.  .+.|.+++................+..|...+.|.+..   .+...|.|.+....
T Consensus        13 ~~~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~~~~~~~~~~~Dgty~~~s~L~v~~---~~~~~ytC~V~H~~   84 (94)
T cd05767          13 ELGEPNTLICFVDNFFPPVLNVTWLKNGVPVTDGVSETRYYPRQDLSFQKFSYLNFTP---EEGDIYSCIVEHWG   84 (94)
T ss_pred             cCCCCeEEEEEEEEEECCcCEEEEEECCeEccCceEEeeeEeCCCCcEEEEEEEEEEC---CCCCeEEEEEEeCC
Confidence            345668999999995443  67899886553211111112222333454556666654   23448999998753

IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom

>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain

Probab=97.98  E-value=0.00026  Score=33.87  Aligned_cols=82  Identities=13%  Similarity=0.219  Sum_probs=44.5

Q ss_pred             cCceeeecCCCcEEEEEEeeecccc--eeEEeeccceeEecccceEEEEecc-ccceEEEEEEEccCCCCC-CeeEEEEE
Q psy4613           7 PNQLVGAPIDTDVTLECYVEAYPKS--INYWVRDQGDMVISSERYEVESISR-SIFDFKMRLTIKKITKYD-LGSYKCIA   82 (96)
Q Consensus         7 ~~~~~~~~~g~~~~l~c~~~~~~~~--~~~w~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~i~~~~~~d-~g~y~c~~   82 (96)
                      ++.......+..++|.|.+.+.-+.  .+.|.+++..+.............. ..|...+.|.+....-.+ ...|.|.+
T Consensus         9 ~ps~~e~~~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g~~~~~~~~~~~~gTYs~~S~L~v~~~~w~~~~~~ytC~V   88 (115)
T cd05769           9 PPSEAEIRNKRKATLVCLATGFYPDHVSLSWKVNGKEVTDGVATDPQALRENTSTYSISSRLRVSATEWFNPRNTFTCIV   88 (115)
T ss_pred             CcChHHhccCCCcEEEEEEEeEeCCCcEEEEEECCEECCCCcccccceecCCCCeEEEEEEEEEChHHhccCCCeEEEEE
Confidence            3333333346678999999985444  7789988655431111000111111 234455667666544333 34899998


Q ss_pred             ecCCCc
Q psy4613          83 KNSLGE   88 (96)
Q Consensus        83 ~~~~g~   88 (96)
                      ......
T Consensus        89 ~H~g~~   94 (115)
T cd05769          89 QFYGGT   94 (115)
T ss_pred             EEeCCc
Confidence            765433

IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.

>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin

Probab=97.96  E-value=0.00023  Score=32.78  Aligned_cols=68  Identities=12%  Similarity=0.184  Sum_probs=41.1

Q ss_pred             cCCCcEEEEEEeeecccc--eeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecC
Q psy4613          14 PIDTDVTLECYVEAYPKS--INYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNS   85 (96)
Q Consensus        14 ~~g~~~~l~c~~~~~~~~--~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~   85 (96)
                      ..|....|.|.+.+.-++  .+.|.+++.... ...........+..|+..+.|.+..   .+...|.|.+...
T Consensus        13 ~~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~-~~~~~~~~p~~d~tyq~~s~l~~~~---~~~~~ysC~V~H~   82 (93)
T cd05770          13 ENGKPNVLNCYVTGFHPPDIEIRLLKNGVKIP-KVEQSDLSFSKDWTFYLLKSTEFTP---TKGDEYACRVRHN   82 (93)
T ss_pred             cCCCceEEEEEEEEEeCCCCEEEEEECCEECC-CcEECcEEECCCCCEEEEEEEEECC---CCCCeEEEEEEEC
Confidence            446667899999985444  678999876543 2211222233333454555555553   3445799999874

IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.

>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.92  E-value=0.00029  Score=32.60  Aligned_cols=80  Identities=18%  Similarity=0.240  Sum_probs=44.2

Q ss_pred             cCceeeecCCCcEEEEEEeeec-ccc--eeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEe
Q psy4613           7 PNQLVGAPIDTDVTLECYVEAY-PKS--INYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAK   83 (96)
Q Consensus         7 ~~~~~~~~~g~~~~l~c~~~~~-~~~--~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~   83 (96)
                      ++.......++.++|.|.+.+. -++  .+.|.+++......... ......+..+...+.+.+..-.-.+...|.|.+.
T Consensus         5 pPs~~~l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~~~~~~~-~~~~~~dgty~~~s~l~v~~~~w~~g~~ysC~V~   83 (96)
T cd07696           5 PPSPKQLLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEPVKASIQ-PPESHNNATLSVTSTLNVSTDDWISGDTFQCKVT   83 (96)
T ss_pred             CcCHHHhccCCCeEEEEEEeCCCCCCCcEEEEEECCeEeeeEEec-ccccCCCCCEEEEEEEEeCHHHccCCCcEEEEEE
Confidence            4444445568899999999998 333  67899975433211111 1111222234445555555432222337999998


Q ss_pred             cCCC
Q psy4613          84 NSLG   87 (96)
Q Consensus        84 ~~~g   87 (96)
                      ...-
T Consensus        84 H~~l   87 (96)
T cd07696          84 HPDL   87 (96)
T ss_pred             CCCC
Confidence            7643

IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.82  E-value=0.00031  Score=32.85  Aligned_cols=74  Identities=12%  Similarity=0.234  Sum_probs=40.6

Q ss_pred             ecCCCcEEEEEEeeecccc--eeEEeeccceeEeccc-ceEEEEec--cccceEEEEEEEccCCCCCCeeEEEEEecCC
Q psy4613          13 APIDTDVTLECYVEAYPKS--INYWVRDQGDMVISSE-RYEVESIS--RSIFDFKMRLTIKKITKYDLGSYKCIAKNSL   86 (96)
Q Consensus        13 ~~~g~~~~l~c~~~~~~~~--~~~w~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~   86 (96)
                      ...+..++|.|.+.+..++  .+.|.+++........ ........  +..|...+.|.+..-.-.+...|.|.+....
T Consensus        13 ~~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~~~~~~~~~~~~~~~~dgTy~~~s~L~v~~~~w~~~~~ytC~V~H~~   91 (102)
T cd05768          13 LSLQETATLTCLVKGFSPSDIFVKWLQNGQPLSKQKYVTTAPMQEPGGNESYFLYSKLTVSAEDWNAGDVFTCVVGHEA   91 (102)
T ss_pred             hCcCCceEEEEEEeeEeCCCCEEEEEECCEECCcccccccCcccccCCCCeEEEEEEEEEcHHHhcCCCcEEEEeEeCC
Confidence            4457889999999985544  5689988654321100 00000100  1233345556554332233457999998754

IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=97.74  E-value=0.00068  Score=31.34  Aligned_cols=68  Identities=7%  Similarity=0.139  Sum_probs=38.9

Q ss_pred             CCCcEEEEEEe-eecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCC
Q psy4613          15 IDTDVTLECYV-EAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSL   86 (96)
Q Consensus        15 ~g~~~~l~c~~-~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~   86 (96)
                      ........|.+ .+.|.+.+.|+++.....    ........+..+...+.|.+......+...|.|.+.+..
T Consensus        14 ~~~~~va~C~s~~gkP~a~ItW~~~~~~~~----~~~~~~~~~g~~tv~S~l~~~p~~~d~G~~~tC~v~h~~   82 (95)
T cd05719          14 GEPVTVATCVSANGKPPATISWETTLGGEA----ETQSKENPNGTVTVTSEYRLVPSREANGKELTCVVSHPT   82 (95)
T ss_pred             CCccEEEEEECCCCcCCCEEEEEeCCCCcc----eeEeecCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcc
Confidence            34456778987 467888999998611110    111111111122244566665555555559999998865

Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus

>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain

Probab=97.74  E-value=0.00069  Score=31.39  Aligned_cols=69  Identities=16%  Similarity=0.293  Sum_probs=38.7

Q ss_pred             cCCCcEEEEEEeeecccc--eeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecC
Q psy4613          14 PIDTDVTLECYVEAYPKS--INYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNS   85 (96)
Q Consensus        14 ~~g~~~~l~c~~~~~~~~--~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~   85 (96)
                      ..+...+|.|.+.+.-++  .+.|.+++................ +.|...+.|.+..-..  ...|.|.+...
T Consensus        14 ~~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~~~~~~~~~~~~~-dty~~~S~L~vt~~~~--~~~ysC~V~H~   84 (96)
T cd07697          14 EKQGQGIYLCLLENFFPDVIQVHWREGNSPSILGSQKSEKDKDN-DVYSTTSWLTVTKDSL--GKKFRCIYKHE   84 (96)
T ss_pred             ccCCCEEEEEEEEEEeCCCeEEEEEECCEECcCCeEeccEecCC-CEEEEEEEEEECchhC--CCeEEEEEEEC
Confidence            345678999999985444  678998865532111111111111 2444556666554322  23599999873

IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.

>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=97.71  E-value=0.00066  Score=30.39  Aligned_cols=71  Identities=17%  Similarity=0.280  Sum_probs=41.3

Q ss_pred             cCCCcEEEEEEeeecccc--eeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCC
Q psy4613          14 PIDTDVTLECYVEAYPKS--INYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLG   87 (96)
Q Consensus        14 ~~g~~~~l~c~~~~~~~~--~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g   87 (96)
                      ..++.+.|.|.+.+..+.  .+.|.+++..+.............+..+...+.+.+.   ..+...|.|.+.....
T Consensus         6 ~~~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~---~~~~~~ysC~V~H~~l   78 (83)
T PF07654_consen    6 ELGGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVETTPPPPNSDGTYSVTSSLTVT---WNSGDEYSCRVTHESL   78 (83)
T ss_dssp             HSTSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEEEEEEEEETTSEEEEEEEEEEE---TTTTGGEEEEEEETTS
T ss_pred             cCCCCEEEEEEEEEEECCCcEEEEEeccceeeeeeeecccccccccceeeeEEEEec---CCCCCEEEEEEEECCC
Confidence            348899999999985433  6889887654421111111111233344455666666   2333489999986543

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....

>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain

Probab=97.66  E-value=0.0011  Score=31.55  Aligned_cols=72  Identities=8%  Similarity=0.230  Sum_probs=42.2

Q ss_pred             ecCCCcEEEEEEeeeccc--ceeEEeeccceeEecccceEEEEecc-ccceEEEEEEEccCCCCCCeeEEEEEecCC
Q psy4613          13 APIDTDVTLECYVEAYPK--SINYWVRDQGDMVISSERYEVESISR-SIFDFKMRLTIKKITKYDLGSYKCIAKNSL   86 (96)
Q Consensus        13 ~~~g~~~~l~c~~~~~~~--~~~~w~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~   86 (96)
                      ...|+.++|.|.+.+.-+  -.+.|++++..+...  ......... ..|...+.|.+......+...|.|.+....
T Consensus        18 ~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~~--~~~~~p~~d~~ty~~~S~L~~~~~~~d~~~~ytC~V~H~~   92 (111)
T cd05772          18 ANPGQSVNFTCSAHGFSPRDITVKWLKNGNELSAE--QPNITPEGDSVSYNVTSTVQVKLTEDDVHSQVTCEVQHRT   92 (111)
T ss_pred             cCCCCCEEEEEEEeeEeCCCCEEEEEECCEECccc--ccceeeCCCCCcEEEEEEEEEECccccccCceEEEEEeCC
Confidence            346778999999988544  378999987654311  111111111 234455666666533332336999988753

IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating

>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain

Probab=97.58  E-value=0.00022  Score=35.09  Aligned_cols=32  Identities=28%  Similarity=0.449  Sum_probs=25.6

Q ss_pred             EEEEccCCCCCCeeEEEEEecCCCceEEEEEe
Q psy4613          64 RLTIKKITKYDLGSYKCIAKNSLGEVESSIRL   95 (96)
Q Consensus        64 ~l~i~~~~~~d~g~y~c~~~~~~g~~~~~~~l   95 (96)
                      .|.|.+++..|.|.|.|.+.+..+.....+.|
T Consensus         2 sL~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l   33 (139)
T cd05771           2 SLTLPGLTVHDEGTYICSVSTPPHQAQQIIQL   33 (139)
T ss_pred             eEEECCCCHHHCEEEEEEEEccCcceeeEEEE
Confidence            47899999999999999998876665554443

IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.

>PHA02633 hypothetical protein; Provisional

Probab=97.55  E-value=0.0005  Score=29.07  Aligned_cols=30  Identities=30%  Similarity=0.308  Sum_probs=23.4

Q ss_pred             EEEEEccCCCCCCeeEEEEEecCCCceEEE
Q psy4613          63 MRLTIKKITKYDLGSYKCIAKNSLGEVESS   92 (96)
Q Consensus        63 ~~l~i~~~~~~d~g~y~c~~~~~~g~~~~~   92 (96)
                      ..|.|.++...|+|.|.|...|..-....+
T Consensus        18 ~nLwilpa~~sDSGiYiC~~rn~t~c~~~s   47 (63)
T PHA02633         18 NNMLILNPTQSDSGIYMCITKNETYSDMMK   47 (63)
T ss_pred             ccEEEeccccccCcEEEEEEcCCCeeEEEE
Confidence            458889999999999999998765444333

>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.50  E-value=0.0018  Score=29.94  Aligned_cols=70  Identities=16%  Similarity=0.223  Sum_probs=38.5

Q ss_pred             CCCcEEEEEEeeecccc--eeEEeeccceeEecccce-EEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCC
Q psy4613          15 IDTDVTLECYVEAYPKS--INYWVRDQGDMVISSERY-EVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSL   86 (96)
Q Consensus        15 ~g~~~~l~c~~~~~~~~--~~~w~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~   86 (96)
                      ..+.++|.|.+.+.-+.  .+.|.+++.. . ..... .........|...+.|.+..-.-.....|.|.+....
T Consensus        15 ~~~~~~L~C~a~gFyP~~i~vtW~k~g~~-~-~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~ytC~V~H~~   87 (95)
T cd04985          15 SSDSVTLGCLATGFLPEPVTFTWNSGSNS-T-SGVKTYPAVLQSGGLYTASSQLTVPASEWKGKESFYCKVEHPS   87 (95)
T ss_pred             CCCcEEEEEEEeeEECCCcEEEEeECCEE-C-CCcEECCCEeCCCCCEEEEEEEEEeHHHcCCCCcEEEEEEeCC
Confidence            45678999999985444  6789988654 2 11110 0011112344445556555432112347999988754

IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4)

Probab=97.43  E-value=0.0028  Score=30.36  Aligned_cols=71  Identities=10%  Similarity=0.141  Sum_probs=43.3

Q ss_pred             eeeecCCCcEEEEEEeeeccc---ceeEEeecccee---Ee---c--------ccceEEEEeccccceEEEEEEEccCCC
Q psy4613          10 LVGAPIDTDVTLECYVEAYPK---SINYWVRDQGDM---VI---S--------SERYEVESISRSIFDFKMRLTIKKITK   72 (96)
Q Consensus        10 ~~~~~~g~~~~l~c~~~~~~~---~~~~w~~~~~~~---~~---~--------~~~~~~~~~~~~~~~~~~~l~i~~~~~   72 (96)
                      ...+..+..+.|.|.+.+...   -.+.|++.....   ..   .        ..++....   +.......|.|.+++.
T Consensus         7 ~~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~---~~s~ntv~L~l~~L~a   83 (115)
T cd05721           7 PVLASSNGAASLVCEYTYNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDG---TLGNEQVNFTLQNLRA   83 (115)
T ss_pred             CeEEcCCCCEEEEEEecCCccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeE---eCCCCEEEEEEcCCCH
Confidence            345677888999999876443   357788753221   10   0        01111111   1111246799999999


Q ss_pred             CCCeeEEEEEe
Q psy4613          73 YDLGSYKCIAK   83 (96)
Q Consensus        73 ~d~g~y~c~~~   83 (96)
                      .|.+.|.|...
T Consensus        84 ~DTa~Y~Ca~e   94 (115)
T cd05721          84 NQTDIYFCKIE   94 (115)
T ss_pred             HHCeEEEEEee
Confidence            99999999653

IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased

>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain

Probab=97.39  E-value=0.0027  Score=29.28  Aligned_cols=70  Identities=13%  Similarity=0.202  Sum_probs=40.0

Q ss_pred             cCCCcEEEEEEeeecccc--eeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCC
Q psy4613          14 PIDTDVTLECYVEAYPKS--INYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSL   86 (96)
Q Consensus        14 ~~g~~~~l~c~~~~~~~~--~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~   86 (96)
                      ..++..+|.|.+.+.-++  .+.|.+++...................+...+.|.+..   .+...|.|.+....
T Consensus        12 ~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgTy~~~s~L~~~~---~~~~~ysC~V~H~~   83 (94)
T cd05766          12 SLSHPHLLVCHVWGFYPPEITVKWFKNGQEETEGVVSTELIPNGDWTYQILVMLETTP---SRGDTYTCVVEHSS   83 (94)
T ss_pred             cCCCCeEEEEEEeeecCCCCEEEEEECCeecCCCceecceEECCCCcEEEEEEEEEcC---CCCCEEEEEEEeCC
Confidence            357889999999985444  67899986553211011111112222343445555543   34448999998753

IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be

>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.35  E-value=0.0032  Score=29.40  Aligned_cols=77  Identities=12%  Similarity=0.178  Sum_probs=41.3

Q ss_pred             cCceeeecCCCcEEEEEEeeecc-c--ceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEe
Q psy4613           7 PNQLVGAPIDTDVTLECYVEAYP-K--SINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAK   83 (96)
Q Consensus         7 ~~~~~~~~~g~~~~l~c~~~~~~-~--~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~   83 (96)
                      ++.......+..+.+.|.+.+.. +  -.+.|..++..-....   ......+..|...+.|.+..-.=.....|.|.+.
T Consensus        10 pPs~e~l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~~~~~t---~~~~~~dgTys~~S~L~v~~~~W~~g~~ytC~V~   86 (99)
T cd04986          10 RPALEDLLLGSSASLTCTLSGLRDPEGAVFTWTPSGGKEAVQT---SAESDQCGCYSVSSVLPGCAEEWNKGEPFACTVT   86 (99)
T ss_pred             CcChHHhCcCCccEEEEEEeccCCCCCeEEEEEECCccCcEEc---CcccCCCCCEEEEEEEEeCHHHhcCCCeEEEEEE
Confidence            33333344678899999999854 2  3688988764311000   0111122334445666655321122237999988


Q ss_pred             cCC
Q psy4613          84 NSL   86 (96)
Q Consensus        84 ~~~   86 (96)
                      ...
T Consensus        87 H~~   89 (99)
T cd04986          87 HPE   89 (99)
T ss_pred             CCC
Confidence            753

IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins

Probab=97.34  E-value=0.0032  Score=29.17  Aligned_cols=68  Identities=7%  Similarity=0.092  Sum_probs=38.6

Q ss_pred             CCCcEEEEEEee-ecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCC
Q psy4613          15 IDTDVTLECYVE-AYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSL   86 (96)
Q Consensus        15 ~g~~~~l~c~~~-~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~   86 (96)
                      .-....+.|.+. +.|.+.+.|+.+.....    ...........+...+.|.+......|...+.|.+.+..
T Consensus        14 ~~~~~va~C~s~~gkPaa~IsW~~~~~g~~----~~~~~~~~~gt~tv~S~l~~~P~~~d~Gk~ltC~v~h~a   82 (95)
T cd07703          14 TIPVPVAKCVSANGRPPARISWSSTLGGNA----NTTSKENGDGTVTVTSEYSLVPTPEANGKEVTCKVEHET   82 (95)
T ss_pred             CCccEEEEEEcCCCCCCcEEEEEcCCCCCe----eEEEEeCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcc
Confidence            344577889865 67888999997621111    011111111112234566665555555569999999865

Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.

>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains

Probab=96.88  E-value=0.0089  Score=25.95  Aligned_cols=49  Identities=16%  Similarity=0.306  Sum_probs=33.0

Q ss_pred             CCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEec
Q psy4613          16 DTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKN   84 (96)
Q Consensus        16 g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~   84 (96)
                      ..++.|.|..    ...+.|++ +......               ...++.+-.....-.|.|.|...+
T Consensus         6 ~~~V~L~C~~----~tsi~W~k-G~~~~~~---------------~~~tlnLGs~~~DPRG~Y~C~~s~   54 (69)
T cd07691           6 EGKVFLKCNG----ATNITWKK-GKEILEV---------------SNTLLDLGSRINDPRGTYSCKESE   54 (69)
T ss_pred             CceEEEEecC----CCcEEEec-Ccccccc---------------cccEEeccCcccCCCcceEecCcc
Confidence            4568899965    24589998 4443211               125677777777778999998766

Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals

Probab=96.52  E-value=0.0075  Score=32.92  Aligned_cols=49  Identities=16%  Similarity=0.308  Sum_probs=35.4

Q ss_pred             ccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecC
Q psy4613          29 PKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNS   85 (96)
Q Consensus        29 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~   85 (96)
                      ..|...|...++..+....+..+..        .+.|.+.+-...++|.|.|...-.
T Consensus        11 iDP~y~W~GP~g~~l~gn~~~nIT~--------TG~L~~~~F~esmSG~YTCtLsYk   59 (271)
T PF07354_consen   11 IDPTYLWTGPNGKPLSGNSYVNITE--------TGKLMFKNFQESMSGSYTCTLSYK   59 (271)
T ss_pred             CCCceEEECCCCcccCCCCeEEEcc--------CceEEeeccccccCCceEEEEEEE
Confidence            5678899887666554433444332        466999999999999999997753

These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region

>KOG3515|consensus

Probab=96.50  E-value=0.0026  Score=39.44  Aligned_cols=65  Identities=25%  Similarity=0.355  Sum_probs=43.1

Q ss_pred             eecCCCcEEEEEEeeeccc-ceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCC
Q psy4613          12 GAPIDTDVTLECYVEAYPK-SINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLG   87 (96)
Q Consensus        12 ~~~~g~~~~l~c~~~~~~~-~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g   87 (96)
                      .+..|+.+.|.|.+.+.|+ ..+.|++++....   .+....        ...++......+...+.|.|.+.|+.+
T Consensus        18 ~~~~g~~v~l~C~v~~~pp~~~~eW~h~~~~~~---~~~~~~--------~~~~~~~~~~~~~~~~~~~c~a~ns~~   83 (741)
T KOG3515|consen   18 GLRLGEDVPLPCRVNSNPPEIDVEWYHSTSGEH---GRYATI--------ADPTLVTTGDVRDTVAELNCRAFNSVG   83 (741)
T ss_pred             hhccCCcceeeeecCCCCCCcceEEEecCcccc---cccccc--------cCCceeeecchhhhhhhhhhhhccccc
Confidence            6788999999999987654 5899998854432   222111        234555555555555678888877644

>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain

Probab=96.06  E-value=0.028  Score=24.17  Aligned_cols=53  Identities=23%  Similarity=0.265  Sum_probs=30.8

Q ss_pred             ecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecC
Q psy4613          13 APIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNS   85 (96)
Q Consensus        13 ~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~   85 (96)
                      ...|.+++|.|+....   .+.|.+++........                .+.+.+-. ++.|-|.|...+.
T Consensus         4 sisGTtVtlTCP~~~~---~i~W~~n~~~~~g~~~----------------~~~~~~~~-e~~G~Y~C~~~~~   56 (65)
T cd07692           4 SISGTTVTVTCPLSGD---DIKWKKNDQVSQGSDE----------------KYLSLNHF-SSSGYYHCTADNA   56 (65)
T ss_pred             EEeccEEEEECCCCCC---CceEEeCCccCCCCCc----------------eEEeeccC-CCCceEEEEeCCC
Confidence            3458899999975532   2889988633321111                11111222 6688999988643

Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ]

Probab=95.74  E-value=0.036  Score=27.26  Aligned_cols=82  Identities=18%  Similarity=0.312  Sum_probs=38.8

Q ss_pred             eecCCCcEEEEEEeee-----cccceeEEeeccceeEe-cccceEEEE--ec----cccceEEEEEEEccCCCCCCeeEE
Q psy4613          12 GAPIDTDVTLECYVEA-----YPKSINYWVRDQGDMVI-SSERYEVES--IS----RSIFDFKMRLTIKKITKYDLGSYK   79 (96)
Q Consensus        12 ~~~~g~~~~l~c~~~~-----~~~~~~~w~~~~~~~~~-~~~~~~~~~--~~----~~~~~~~~~l~i~~~~~~d~g~y~   79 (96)
                      .....+.+.|+|.+..     ...-.+.|...+..+.. .........  +.    .........|.+...+.- .|.|.
T Consensus        23 ~t~CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a~-~GnYT  101 (130)
T PF08204_consen   23 YTVCNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDAV-EGNYT  101 (130)
T ss_dssp             E-TT-SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHHH--EEEE
T ss_pred             EEecCCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchhcc-ccceE
Confidence            3466888999999854     22336889887655432 221111110  00    000011234555553322 69999


Q ss_pred             EEEecCCCceEEEEE
Q psy4613          80 CIAKNSLGEVESSIR   94 (96)
Q Consensus        80 c~~~~~~g~~~~~~~   94 (96)
                      |.+..........+.
T Consensus       102 CeVt~~~~ege~~i~  116 (130)
T PF08204_consen  102 CEVTELSREGETTIE  116 (130)
T ss_dssp             EEEEETTEEEEEEEE
T ss_pred             EEEEecCCCceEEEE
Confidence            999876665554443

; PDB: 2VSC_B 2JJS_D 2JJT_C.

>PHA02982 hypothetical protein; Provisional

Probab=95.70  E-value=0.14  Score=27.47  Aligned_cols=77  Identities=27%  Similarity=0.431  Sum_probs=45.1

Q ss_pred             eeecCCCcEEEEEEeeecc-cceeEEeeccceeEec--ccceEEEE----------ecc-ccceEEEEEEEccCCCCCCe
Q psy4613          11 VGAPIDTDVTLECYVEAYP-KSINYWVRDQGDMVIS--SERYEVES----------ISR-SIFDFKMRLTIKKITKYDLG   76 (96)
Q Consensus        11 ~~~~~g~~~~l~c~~~~~~-~~~~~w~~~~~~~~~~--~~~~~~~~----------~~~-~~~~~~~~l~i~~~~~~d~g   76 (96)
                      +.+-+++.+.|.|...... ..+..|..........  .....+..          ... ......++|+|.++.....|
T Consensus        34 v~a~vd~~V~L~C~~~~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g~~STLTIkk~~i~N~G  113 (251)
T PHA02982         34 VNATVDQEVKLQCLFKDADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSGNSSTFTMKKPDPQNLG  113 (251)
T ss_pred             hhccCCCcEEEEecCCCcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEeccceeEEeccCCcccCC
Confidence            3455689999999855433 3366787654322210  00000000          000 00114689999999999999


Q ss_pred             eEEEEEecCCC
Q psy4613          77 SYKCIAKNSLG   87 (96)
Q Consensus        77 ~y~c~~~~~~g   87 (96)
                      .|.|.+....+
T Consensus       114 CYtc~~ks~~~  124 (251)
T PHA02982        114 CFTCEAKDAEG  124 (251)
T ss_pred             ceEEEEecCCC
Confidence            99999987554

>PHA03052 Hypothetical protein; Provisional

Probab=95.54  E-value=0.053  Score=23.45  Aligned_cols=34  Identities=15%  Similarity=0.411  Sum_probs=25.0

Q ss_pred             ceeeecCCCcEEEEEEeeecc---cceeEEeecccee
Q psy4613           9 QLVGAPIDTDVTLECYVEAYP---KSINYWVRDQGDM   42 (96)
Q Consensus         9 ~~~~~~~g~~~~l~c~~~~~~---~~~~~w~~~~~~~   42 (96)
                      ..+.+..|+.+++.|.+.-.+   .+.+.|..++...
T Consensus         5 ~~i~~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~~~~   41 (69)
T PHA03052          5 EGIVTSLGSNLTITCKVSLRPPTTDADVFWISNGMYY   41 (69)
T ss_pred             ccEEEEccCCceEeEEEEecCCCcceEEEEEeCCcEE
Confidence            667889999999999976333   4577787765444

>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins

Probab=95.26  E-value=0.12  Score=24.12  Aligned_cols=73  Identities=10%  Similarity=0.082  Sum_probs=42.2

Q ss_pred             ceeeecCCCcEEE-EEEe-eecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecC
Q psy4613           9 QLVGAPIDTDVTL-ECYV-EAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNS   85 (96)
Q Consensus         9 ~~~~~~~g~~~~l-~c~~-~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~   85 (96)
                      ....+..|..+.+ .|.+ .+.|.+.+.|+.+.....    ........+......+.+.+...+..|...+.|.+...
T Consensus         9 ~~~~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G~~----~~~~~~~~ngT~TV~S~~~l~p~r~d~G~~vtC~V~H~   83 (97)
T cd07704           9 PSLLIDGGNGTTLAACCAAEGRPAADVTWETNVYGTS----ESHSQEHPNGTTTVTSEYIWVPSRHANGHPLTCVVSHP   83 (97)
T ss_pred             CeeEeecCcceeEEEEEccCCccCCEeEEeCCCCCcc----ceeeecCCCCCEEEEEEEEEEeCHHHCCcEEEEEEeCc
Confidence            4455677888777 7775 567788999996522111    01111111112223455666555555666999999875

Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect

>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells

Probab=94.83  E-value=0.19  Score=23.95  Aligned_cols=29  Identities=31%  Similarity=0.319  Sum_probs=23.8

Q ss_pred             EEEEEEccCCCCCCeeEEEEEecCCCceE
Q psy4613          62 KMRLTIKKITKYDLGSYKCIAKNSLGEVE   90 (96)
Q Consensus        62 ~~~l~i~~~~~~d~g~y~c~~~~~~g~~~   90 (96)
                      ..+|.|..++..|+|.|...+.+..|...
T Consensus        70 nlaLlIkaAq~qDSG~Y~LEvT~~sG~V~   98 (108)
T PF11465_consen   70 NLALLIKAAQPQDSGLYCLEVTNESGKVC   98 (108)
T ss_dssp             TTEEEESS-SGGG-EEEEEEEEETTSCEE
T ss_pred             CceEEEeecCcccCceEEEEEEcCCCcEE
Confidence            36799999999999999999999888764

It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.

>KOG4597|consensus

Probab=94.37  E-value=0.1  Score=31.22  Aligned_cols=79  Identities=16%  Similarity=0.131  Sum_probs=50.6

Q ss_pred             eeecCCCcEEEEEEeeecccceeEEeec---cceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCC
Q psy4613          11 VGAPIDTDVTLECYVEAYPKSINYWVRD---QGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLG   87 (96)
Q Consensus        11 ~~~~~g~~~~l~c~~~~~~~~~~~w~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g   87 (96)
                      -.+-++.+..+.|...|.+.+.+.|-+.   .......... ... +....  ....|.|-+....|.|.|.|.+.+..|
T Consensus       206 w~vg~wetcS~tCg~~G~q~r~V~c~qv~anr~~vv~~~nq-~~e-~p~vt--stcql~ic~ewq~~a~w~tCs~rcg~g  281 (560)
T KOG4597|consen  206 WFVGDWETCSSTCGVQGRQYRVVTCEQVFANRENVVMRPNQ-TVE-NPVVT--STCQLVICNEWQADAGWYTCSARCGAG  281 (560)
T ss_pred             hhcccchhhcccccccCCcCceeeeehhhccccceeecCcc-ccC-Cccee--eeeeEEEcchhhcCCCceeeccccccc
Confidence            3456788899999999999999999643   1122211111 000 00000  124477888888999999999999888


Q ss_pred             ceEEEE
Q psy4613          88 EVESSI   93 (96)
Q Consensus        88 ~~~~~~   93 (96)
                      .....+
T Consensus       282 ~~~rdv  287 (560)
T KOG4597|consen  282 FLRRDV  287 (560)
T ss_pred             eeeccc
Confidence            765544

>KOG1480|consensus

Probab=93.18  E-value=0.021  Score=35.84  Aligned_cols=70  Identities=21%  Similarity=0.346  Sum_probs=46.7

Q ss_pred             eeecCCCcEEEEEE-eeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCce
Q psy4613          11 VGAPIDTDVTLECY-VEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEV   89 (96)
Q Consensus        11 ~~~~~g~~~~l~c~-~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~   89 (96)
                      ..+..+....+.|. ..+.+...+.|++++.... +... ....       .-..+.+..+...|.|.|.|.+.|.++..
T Consensus       139 q~V~~~s~~~l~cr~pe~~paae~~w~k~e~~~~-pd~n-~~~~-------~d~~li~~~arlsd~~nytc~a~ni~~~r  209 (909)
T KOG1480|consen  139 QEVQEETTLQLPCRPPEGDPKAEVEWLKNEVVID-PDAN-VIRA-------SDHNLIISQARLSDSGNYTCEATNIVAKR  209 (909)
T ss_pred             heecccccccccccCcccchhhhhhccccCCCCC-cccc-chhh-------hcCCccccchhhhhcccceeeeehhhccc
Confidence            44666777777776 4566777889998854432 2111 1111       12457788888999999999999977654

>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=93.00  E-value=0.49  Score=22.29  Aligned_cols=27  Identities=19%  Similarity=0.174  Sum_probs=19.9

Q ss_pred             ecCCCcEEEEEEeeec-cc--ceeEEeecc
Q psy4613          13 APIDTDVTLECYVEAY-PK--SINYWVRDQ   39 (96)
Q Consensus        13 ~~~g~~~~l~c~~~~~-~~--~~~~w~~~~   39 (96)
                      ..+|..+++.|.+.+. |.  ..+.|++..
T Consensus        12 l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~   41 (99)
T cd07689          12 LEEGKPVTVKCEVPDVYPFDRLEIELLKGE   41 (99)
T ss_pred             ccCCceEEEEEEecCcccCCceEEEEecCc
Confidence            4789999999998753 33  367887754

Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.

>PHA02914 Immunoglobulin-like domain protein; Provisional

Probab=92.33  E-value=1.5  Score=26.19  Aligned_cols=76  Identities=20%  Similarity=0.306  Sum_probs=45.6

Q ss_pred             ceeeecCCCcEEEEEEeee---cccceeEEeecc---ceeE-------------ecccceEEEEe--ccccceEEEEEEE
Q psy4613           9 QLVGAPIDTDVTLECYVEA---YPKSINYWVRDQ---GDMV-------------ISSERYEVESI--SRSIFDFKMRLTI   67 (96)
Q Consensus         9 ~~~~~~~g~~~~l~c~~~~---~~~~~~~w~~~~---~~~~-------------~~~~~~~~~~~--~~~~~~~~~~l~i   67 (96)
                      ..+.+++|+++.+.|.+..   .......|..-+   +++.             .....+.+...  -+... ..++|+|
T Consensus       272 ~~~~~~~g~~v~~~c~~s~~~~e~i~~~~w~~t~~~~~~~~g~~~~~~~v~~~~~~~~~~~i~~~~~~s~dl-k~STLTI  350 (500)
T PHA02914        272 DEVMLEVGKRVDIECFFSMCGNENISNAKWIDTGFEIGPLIGTVKSKDIVEGDFAEDDDFMISAHANYSDDL-KNSTLTI  350 (500)
T ss_pred             ceeEeccCcEEEEEEEEeecCCcccccceEEecCCcccceeEEEEecceeecccccCCceEEEEecccccch-hhceEEe
Confidence            3456778999999999875   334466786432   1111             01112222111  00110 4688999


Q ss_pred             ccCCCCCCeeEEEEEecC
Q psy4613          68 KKITKYDLGSYKCIAKNS   85 (96)
Q Consensus        68 ~~~~~~d~g~y~c~~~~~   85 (96)
                      .++.....|.|.|.+...
T Consensus       351 kka~I~N~GCY~~~a~~g  368 (500)
T PHA02914        351 KKAHINNAGCYEAQAFMG  368 (500)
T ss_pred             eeEEEEcCCceEEEEecC
Confidence            999999999999998754

>KOG3515|consensus

Probab=92.05  E-value=0.97  Score=29.00  Aligned_cols=73  Identities=19%  Similarity=0.124  Sum_probs=43.4

Q ss_pred             eecCCCcEEEEEEee--ecccceeEEeeccceeEeccc-ceEEEEeccccc-eEEEEEEEccCCCCCCeeEEEEEec
Q psy4613          12 GAPIDTDVTLECYVE--AYPKSINYWVRDQGDMVISSE-RYEVESISRSIF-DFKMRLTIKKITKYDLGSYKCIAKN   84 (96)
Q Consensus        12 ~~~~g~~~~l~c~~~--~~~~~~~~w~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~l~i~~~~~~d~g~y~c~~~~   84 (96)
                      ....+..+.+.|...  +.|.+.+.|..++........ ........-... ...+.+.+...+..+.|.|.|.+.+
T Consensus       108 ~~~~~~vvqi~c~~~~~~~P~~nlrW~~n~r~e~~~~~~~~~~~~~a~gss~t~~s~l~~~v~Rka~~g~~tC~A~n  184 (741)
T KOG3515|consen  108 FQVDKGVVQIICSAKVAGRPNPNLRWGFNNRAELNAVNQRGRVGAGALGSSYTEPSLLKQTVSRKADNGNYTCPANN  184 (741)
T ss_pred             hhhcCCeEEEEEeecCCCCCCcceeeeeccEEeecccCCcccccccccCceeccccceeeEEEEecCCceeEccccc
Confidence            355678888999654  456668889887654432211 111110000010 1245577777888899999999987

>PHA03042 CD47-like protein; Provisional

Probab=90.70  E-value=1.9  Score=24.30  Aligned_cols=63  Identities=13%  Similarity=0.244  Sum_probs=36.4

Q ss_pred             ecCCCcEEEEEEeeec-----ccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCC
Q psy4613          13 APIDTDVTLECYVEAY-----PKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLG   87 (96)
Q Consensus        13 ~~~g~~~~l~c~~~~~-----~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g   87 (96)
                      ....+++.++|.....     ..-.+.|..++......... .           ...+.+...+ .-.|+|+|.+.+...
T Consensus        28 T~CN~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~n~t-n-----------~aSL~~~f~~-~l~GNYTCEv~~l~n   94 (286)
T PHA03042         28 TTCNKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFKKNNT-N-----------TSSLKFNFSK-NLSGNYTCEAINKFN   94 (286)
T ss_pred             EecCceEEEEeecCChhhcCccceEEEEEeCCeeEEEecCC-c-----------ceEEEEeccc-cCCCceeEEEeeccc
Confidence            3457889999987642     34468898886554322111 0           1233333322 226899999887544


Q ss_pred             c
Q psy4613          88 E   88 (96)
Q Consensus        88 ~   88 (96)
                      .
T Consensus        95 ~   95 (286)
T PHA03042         95 K   95 (286)
T ss_pred             C
Confidence            3

>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []

Probab=89.62  E-value=1.2  Score=20.46  Aligned_cols=65  Identities=14%  Similarity=0.221  Sum_probs=36.7

Q ss_pred             eeeecCCCcEEEEEEeeec-----ccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEE
Q psy4613          10 LVGAPIDTDVTLECYVEAY-----PKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIA   82 (96)
Q Consensus        10 ~~~~~~g~~~~l~c~~~~~-----~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~   82 (96)
                      ...+..|+.++..|.....     ....+.|..++..+  +.++++....      ..+..++........-.|.|..
T Consensus        12 ~pvv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~i--P~~qy~~in~------~~SsVT~~~~~~~~~~L~cC~l   81 (89)
T PF06328_consen   12 SPVVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGEKI--PGSQYRVIND------TVSSVTLPNLNPTGATLFCCKL   81 (89)
T ss_dssp             SSEEETTS-EEEEEEE-CCCHCT-STTCEEEECSSCES--TCGCEEEEST------TEEEEEESS--SSEEEEEEEEE
T ss_pred             CCEEeCCCCEEEEEEEECCCCCCcccceEEEEECCEEC--ChhHcceeCC------eEEEEEEccCCCCCceEEEEEE
Confidence            3457899999999997632     34478898875532  4455544332      2356666666555444555653

The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.

>PHA02865 MHC-like TNF binding protein; Provisional

Probab=89.49  E-value=2.8  Score=24.44  Aligned_cols=21  Identities=24%  Similarity=0.403  Sum_probs=16.6

Q ss_pred             cEEEEEEeeecccc--eeEEeec
Q psy4613          18 DVTLECYVEAYPKS--INYWVRD   38 (96)
Q Consensus        18 ~~~l~c~~~~~~~~--~~~w~~~   38 (96)
                      .+.|.|.+.|.-+.  .+.|.++
T Consensus       216 ~~tL~C~A~GFYP~~I~v~W~kd  238 (338)
T PHA02865        216 NTTLFCTFDSHYPSSVAAKWYNS  238 (338)
T ss_pred             CceEEEEEEeEeCCccEEEEEec
Confidence            57999999996554  5679887

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	96
1qz1_A	291	Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam		4e-06
3laf_A	403	Structure Of Dcc, A Netrin-1 Receptor Length = 403		1e-05
1ie5_A	107	Nmr Structure Of The Third Immunoglobulin Domain Fr		5e-05
2iep_A	192	Crystal Structure Of Immunoglobulin-Like Domains 1		8e-05
3b43_A	570	I-band Fragment I65-i70 From Titin Length = 570		3e-04
2a38_A	194	Crystal Structure Of The N-Terminus Of Titin Length		4e-04
1ya5_A	201	Crystal Structure Of The Titin Domains Z1z2 In Comp		4e-04
3p3y_A	404	Crystal Structure Of Neurofascin Homophilic Adhesio		4e-04
3lcy_A	197	Titin Ig Tandem Domains A164-A165 Length = 197		9e-04

>pdb|1QZ1|A Chain A, Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam Length = 291

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 31/97 (31%), Positives = 47/97 (48%), Gaps = 8/97 (8%)
Query: 2   PVIHVPNQLVGAP--IDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIF 59
           P +     +V A   +   VTL C  + +P+    W +D G+ + + E    E   + IF
Sbjct: 195 PTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKD-GEPIENEE----EDDEKHIF 249
Query: 60  -DFKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
            D    LTI+ + K D   Y CIA+N  GE ++SI L
Sbjct: 250 SDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHL 286

>pdb|3LAF|A Chain A, Structure Of Dcc, A Netrin-1 Receptor Length = 403

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 9/78 (11%)
Query: 18  DVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGS 77
           D+  EC V   P     W+++ GD+VI S+ +++   S         L I  + K D G 
Sbjct: 329 DIEFECAVSGKPVPTVNWMKN-GDVVIPSDYFQIVGGSN--------LRILGVVKSDEGF 379
Query: 78  YKCIAKNSLGEVESSIRL 95
           Y+C+A+N  G  +SS +L
Sbjct: 380 YQCVAENEAGNAQSSAQL 397

>pdb|1IE5|A Chain A, Nmr Structure Of The Third Immunoglobulin Domain From The Neural Cell Adhesion Molecule Length = 107

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 7/84 (8%)
Query: 13  APIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFK-MRLTIKKIT 71
           A +   VTL C  + +P+    W +D G+ +   +  E  S     F++    L IKK+ 
Sbjct: 25  ANLSQSVTLACDADGFPEPTMTWTKD-GEPIEQEDNEEKYS-----FNYDGSELIIKKVD 78
Query: 72  KYDLGSYKCIAKNSLGEVESSIRL 95
           K D   Y CIA+N  GE +++I L
Sbjct: 79  KSDEAEYICIAENKAGEQDATIHL 102

>pdb|2IEP|A Chain A, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2 Of The Receptor Tyrosine Kinase Musk Length = 192

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 40/86 (46%), Gaps = 7/86 (8%)
Query: 2  PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDF 61
          PVI  P + V A ++   T  C VE+YP+    W R++  + +   RY       SI + 
Sbjct: 8  PVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRY-------SIREN 60
Query: 62 KMRLTIKKITKYDLGSYKCIAKNSLG 87
             LTI  +   D G Y C A N +G
Sbjct: 61 GQLLTILSVEDSDDGIYCCTANNGVG 86

>pdb|3B43|A Chain A, I-band Fragment I65-i70 From Titin Length = 570

Iteration: 1
 Score = 40.0 bits (92), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 43/96 (44%), Gaps = 20/96 (20%)
Query: 7  PNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMR-- 64
          P + V A I   +TL+C V+  P+    W ++   +             RS   +KM+  
Sbjct: 11 PLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKL-------------RSAPAYKMQFK 57
Query: 65 -----LTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
               L I K+   D+G Y C A+NS+G V SS  L
Sbjct: 58 NNVASLVINKVDHSDVGEYTCKAENSVGAVASSAVL 93

>pdb|2A38|A Chain A, Crystal Structure Of The N-Terminus Of Titin Length = 194

Iteration: 1
 Score = 40.0 bits (92), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 40/94 (42%), Gaps = 4/94 (4%)
Query: 2  PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDF 61
          P    P Q V     +  T E ++  +P     W RD    VIS+       IS S  D 
Sbjct: 6  PTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRD--GQVISTSTLPGVQISFS--DG 61
Query: 62 KMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
          + +LTI  +TK + G Y   A N  G+  S+  L
Sbjct: 62 RAKLTIPAVTKANSGRYSLKATNGSGQATSTAEL 95

>pdb|1YA5|A Chain A, Crystal Structure Of The Titin Domains Z1z2 In Complex With Telethonin Length = 201

Iteration: 1
 Score = 39.7 bits (91), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 40/94 (42%), Gaps = 4/94 (4%)
Query: 2  PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDF 61
          P    P Q V     +  T E ++  +P     W RD    VIS+       IS S  D 
Sbjct: 6  PTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRD--GQVISTSTLPGVQISFS--DG 61
Query: 62 KMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
          + +LTI  +TK + G Y   A N  G+  S+  L
Sbjct: 62 RAKLTIPAVTKANSGRYSLKATNGSGQATSTAEL 95

>pdb|3P3Y|A Chain A, Crystal Structure Of Neurofascin Homophilic Adhesion Complex In Space Group P6522 Length = 404

Iteration: 1
 Score = 39.7 bits (91), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 34/78 (43%), Gaps = 9/78 (11%)
Query: 18  DVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGS 77
           D+ LEC     P     W +  GD+     ++E         +F   L I  +++ D G 
Sbjct: 239 DLLLECIASGVPTPDIAWYKKGGDLPSDKAKFE---------NFNKALRITNVSEEDSGE 289
Query: 78  YKCIAKNSLGEVESSIRL 95
           Y C+A N +G +  +I +
Sbjct: 290 YFCLASNKMGSIRHTISV 307

>pdb|3LCY|A Chain A, Titin Ig Tandem Domains A164-A165 Length = 197

Iteration: 1
 Score = 38.5 bits (88), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 37/75 (49%), Gaps = 6/75 (8%)
Query: 21 LECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKC 80
          L C +   P     W R  G  +I S +Y++ S  R+       LT+    + D G Y C
Sbjct: 27 LSCQIVGRPLPDIKWYRF-GKELIQSRKYKMSSDGRT-----HTLTVMTEEQEDEGVYTC 80
Query: 81 IAKNSLGEVESSIRL 95
          IA N +GEVE+S +L
Sbjct: 81 IATNEVGEVETSSKL 95

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	96
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	1e-22
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	2e-12
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	8e-12
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	2e-20
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	1e-14
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	2e-19
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	3e-18
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	2e-13
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	5e-17
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	4e-08
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	1e-16
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	4e-13
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	2e-12
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	1e-11
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	2e-10
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	1e-09
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	3e-09
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	2e-05
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	2e-16
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	4e-12
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	8e-16
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	5e-15
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	7e-13
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	2e-15
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	3e-15
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	4e-15
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	1e-12
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	5e-15
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	6e-15
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	8e-09
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	7e-15
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	6e-10
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	2e-08
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	1e-14
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	1e-13
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	1e-14
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	1e-14
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	2e-13
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	4e-13
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	1e-12
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	5e-12
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	1e-14
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	2e-14
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	8e-09
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	1e-14
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	1e-14
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	1e-14
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	1e-14
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	2e-14
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	2e-14
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	2e-14
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	3e-13
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	3e-07
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	3e-07
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	2e-14
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	5e-13
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	3e-14
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	3e-14
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	1e-05
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	3e-14
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	3e-14
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	4e-14
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	3e-13
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	6e-09
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	4e-14
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	1e-12
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	5e-14
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	6e-14
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	7e-14
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	8e-14
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	9e-08
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	9e-14
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	4e-13
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	2e-10
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	8e-06
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	2e-13
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	2e-13
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	2e-12
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	1e-11
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	6e-08
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	2e-05
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	3e-13
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	3e-13
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	3e-13
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	8e-13
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	5e-07
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	7e-07
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	3e-13
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	3e-13
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	3e-09
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	5e-13
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	3e-12
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	5e-13
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	5e-13
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	2e-11
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	5e-11
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	1e-10
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	2e-09
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	3e-09
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	1e-06
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	5e-13
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	5e-13
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	6e-13
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	4e-10
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	6e-13
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	5e-10
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	8e-08
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	6e-13
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	1e-04
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	7e-13
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	8e-13
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	6e-10
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	2e-05
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	8e-13
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	5e-08
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	5e-04
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	8e-13
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	2e-07
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	9e-13
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	1e-12
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	1e-12
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	3e-09
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	4e-09
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	7e-08
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	1e-05
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	1e-12
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	1e-12
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	9e-06
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	1e-04
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	1e-12
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	5e-10
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	1e-08
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	2e-12
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	3e-11
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	1e-09
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	9e-05
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	2e-12
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	2e-12
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	3e-12
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	2e-12
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	4e-11
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	1e-08
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	4e-06
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	2e-12
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	3e-11
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	2e-12
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	2e-09
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	2e-12
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	2e-11
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	8e-09
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	1e-07
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	3e-06
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	2e-12
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	4e-12
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	3e-11
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	2e-06
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	3e-12
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	2e-08
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	4e-12
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	6e-12
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	1e-06
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	1e-06
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	5e-12
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	5e-12
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	5e-12
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	6e-12
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	2e-11
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	7e-12
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	8e-11
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	1e-10
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	7e-12
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	4e-11
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	9e-12
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-11
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	1e-11
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	1e-11
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	2e-11
1nn8_R	302	CD155 antigen, poliovirus receptor; icosahedral vi	2e-11
1nn8_R	302	CD155 antigen, poliovirus receptor; icosahedral vi	9e-07
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	2e-11
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	2e-08
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	2e-11
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	2e-10
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	3e-08
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	2e-11
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	5e-06
1he7_A	126	High affinity nerve growth factor receptor; transf	2e-11
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	3e-11
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	4e-11
2ens_A	96	Advanced glycosylation END product-specific recept	4e-11
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-11
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	5e-11
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	6e-11
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	6e-11
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	2e-09
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	9e-11
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	1e-10
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	2e-08
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	3e-04
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-10
2ch8_A	201	BARF1, P33, 33 kDa early protein; viral protein, i	2e-10
2ch8_A	201	BARF1, P33, 33 kDa early protein; viral protein, i	3e-05
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	2e-10
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	2e-06
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	6e-05
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	3e-10
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-10
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	4e-10
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	5e-10
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	7e-06
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	5e-10
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	2e-09
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	7e-10
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	7e-10
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	8e-10
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	5e-08
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	2e-07
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	2e-09
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	3e-07
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	3e-09
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	4e-09
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	6e-04
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	5e-09
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	6e-09
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	7e-09
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	8e-06
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	9e-09
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	1e-06
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	3e-06
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	1e-08
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	2e-08
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	3e-08
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	3e-08
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	3e-08
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	4e-08
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	5e-08
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	5e-08
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	6e-08
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	2e-07
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	2e-07
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	2e-07
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	2e-07
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	3e-07
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	8e-07
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	4e-06
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	9e-06
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	2e-04
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	4e-07
3rbg_A	124	Cytotoxic and regulatory T-cell molecule; IGV, crt	5e-07
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	7e-07
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	7e-07
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	8e-07
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	1e-06
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	6e-04
1pko_A	139	Myelin oligodendrocyte glycoprotein; IGV-domain, i	1e-06
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	1e-06
2eo1_A	102	OBSCN protein, cDNA FLJ14124 FIS, clone mamma10024	2e-06
3q0h_A	117	T cell immunoreceptor with IG and ITIM domains; im	2e-06
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	2e-06
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	2e-05
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	3e-06
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	3e-06
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	4e-04
3m45_A	108	Cell adhesion molecule 2; IG fold, dimer, disulfid	4e-06
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	6e-06
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	6e-06
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	2e-05
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	9e-06
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	9e-06
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	1e-05
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	1e-05
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	6e-05
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	1e-05
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	3e-05
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	3e-05
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	3e-05
1n26_A	325	IL-6 receptor alpha chain; transmembrane, glycopro	3e-05
1eaj_A	126	Coxsackie virus and adenovirus receptor; virus/vir	8e-05
2edn_A	118	Myosin-binding protein C, fast-type; beta-sandwich	9e-05
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	1e-04
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	1e-04
1z9m_A	145	GAPA225; nectin-like, IG-like domain, V domain, ce	1e-04
2pnd_A	119	V-SET and immunoglobulin domain containing 4; comp	3e-04
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	3e-04
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	4e-04
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	6e-04

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score = 87.6 bits (217), Expect = 1e-22
 Identities = 28/96 (29%), Positives = 43/96 (44%), Gaps = 6/96 (6%)

Query: 2   PVIHVPNQLVG--APIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIF 59
           P +     +V   A +   VTL C  + +P+    W +D G+ + + E            
Sbjct: 195 PTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKD-GEPIENEEED---DEKHIFS 250

Query: 60  DFKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
           D    LTI+ + K D   Y CIA+N  GE ++SI L
Sbjct: 251 DDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHL 286

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score = 59.9 bits (145), Expect = 2e-12
 Identities = 16/93 (17%), Positives = 26/93 (27%), Gaps = 6/93 (6%)

Query: 2  PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINY-WVRDQGDMVISS-ERYEVESISRSIF 59
            + +        +       C V    K  +  W    G+ +  + +R  V        
Sbjct: 3  LQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSS 62

Query: 60 DFKMRLTIKKITKYDLGSYKCIAKNSLGEVESS 92
               LTI      D G YKC+     G    +
Sbjct: 63 ----TLTIYNANIDDAGIYKCVVTAEDGTQSEA 91

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score = 58.3 bits (141), Expect = 8e-12
 Identities = 16/95 (16%), Positives = 31/95 (32%), Gaps = 9/95 (9%)

Query: 2   PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSE-RYEVESISRSIFD 60
            +              D  + C V +       W     D+++  + R+ V S +     
Sbjct: 101 LMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNY---- 156

Query: 61  FKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
               L I+ I K D G+Y+C  +       +   +
Sbjct: 157 ----LQIRGIKKTDEGTYRCEGRILARGEINFKDI 187

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209

 Score = 80.4 bits (198), Expect = 2e-20
 Identities = 21/97 (21%), Positives = 34/97 (35%), Gaps = 4/97 (4%)

Query: 2   PVIHVPNQLVGAPIDTDVTLECYV-EAYPKSINYWVRDQGDMVISSERYEVESI--SRSI 58
           P     N    A I     L C   +  P S   W +D G ++ ++ +        S  +
Sbjct: 108 PSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKD-GIVMPTNPKSTRAFSNSSYVL 166

Query: 59  FDFKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
                 L    ++  D G Y C A+N  G   +S  +
Sbjct: 167 NPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAV 203

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209

 Score = 65.4 bits (159), Expect = 1e-14
 Identities = 20/97 (20%), Positives = 33/97 (34%), Gaps = 2/97 (2%)

Query: 2   PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDF 61
             +H     V  P +  V L C    +      W  DQGD           + S      
Sbjct: 5   VTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVT 64

Query: 62  KM--RLTIKKITKYDLGSYKCIAKNSLGEVESSIRLY 96
            +   +T K +T+ D G+Y C+     G     +++ 
Sbjct: 65  FLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVK 101

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X Length = 103

 Score = 75.2 bits (185), Expect = 2e-19
 Identities = 20/95 (21%), Positives = 34/95 (35%), Gaps = 4/95 (4%)

Query: 4  IHVP---NQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFD 60
          +H       L     D    +   V+  PK    W  + G ++  S+    +    +  +
Sbjct: 1  VHFAPTITFLESPTSDHHWCIPFTVKGNPKPALQWFYN-GAILNESKYICTKIHVTNHTE 59

Query: 61 FKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
          +   L +   T  + G Y  IAKN  G+ E  I  
Sbjct: 60 YHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISA 94

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212

 Score = 74.6 bits (183), Expect = 3e-18
 Identities = 21/99 (21%), Positives = 36/99 (36%), Gaps = 5/99 (5%)

Query: 2   PVIHVPNQLVGAPIDTDVTLECYV-EAYPKSINYWVRDQGDMVISSERYEVESISRSIFD 60
           P     +      I     L C   +  P S   W +D G  +++++  +  +   S F 
Sbjct: 105 PSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKD-GISMLTADAKKTRAFMNSSFT 163

Query: 61  FKMR---LTIKKITKYDLGSYKCIAKNSLGEVESSIRLY 96
              +   L    +T +D G Y C A+N  G    S   +
Sbjct: 164 IDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAH 202

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212

 Score = 61.5 bits (149), Expect = 2e-13
 Identities = 15/98 (15%), Positives = 31/98 (31%), Gaps = 4/98 (4%)

Query: 2  PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDF 61
            ++     V  P +  + L C    +      W   QG    +   Y  +  +      
Sbjct: 2  GSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGST-TALVCYNSQITAPYADRV 60

Query: 62 KMR---LTIKKITKYDLGSYKCIAKNSLGEVESSIRLY 96
                +T   +T+ D G Y C+     G+    + ++
Sbjct: 61 TFSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIH 98

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score = 71.0 bits (174), Expect = 5e-17
 Identities = 25/96 (26%), Positives = 40/96 (41%), Gaps = 10/96 (10%)

Query: 2   PVIHVPNQL--VGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIF 59
           P I +P +     A    ++T  C     P+    W R+ G ++  +E+Y ++  +    
Sbjct: 97  PAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRN-GKLIEENEKYILKGSNTE-- 153

Query: 60  DFKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
                LT++ I   D G Y C A N  GE E    L
Sbjct: 154 -----LTVRNIINSDGGPYVCRATNKAGEDEKQAFL 184

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score = 47.1 bits (112), Expect = 4e-08
 Identities = 16/92 (17%), Positives = 27/92 (29%), Gaps = 9/92 (9%)

Query: 2  PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMV-ISSERYEVESISRSIFD 60
                          D  + C V + P     W+    ++  IS  R+ + + +     
Sbjct: 3  LTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNN---- 58

Query: 61 FKMRLTIKKITKYDLGSYKCIAKNSLGEVESS 92
              L I  I K D G Y+C  +         
Sbjct: 59 ----LQILNINKSDEGIYRCEGRVEARGEIDF 86

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 72.3 bits (177), Expect = 1e-16
 Identities = 29/94 (30%), Positives = 39/94 (41%), Gaps = 1/94 (1%)

Query: 2   PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDF 61
           PVI    Q         V L+C     P     W  D G  + +++RY+V        D 
Sbjct: 430 PVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELD-GKKIANNDRYQVGQYVTVNGDV 488

Query: 62  KMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
              L I  +   D G YKCIAK+ +G  E S +L
Sbjct: 489 VSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKL 522

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 62.3 bits (151), Expect = 4e-13
 Identities = 17/94 (18%), Positives = 28/94 (29%), Gaps = 4/94 (4%)

Query: 2   PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDF 61
            V      +      + + L C  + YP  +  W +                ++  +   
Sbjct: 249 VVSLAKFDMKTYSGSSTMALLCPAQGYPVPVFRWYKFIEGTTRKQAVV----LNDRVKQV 304

Query: 62  KMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
              L IK     D G Y C+  NS+G       L
Sbjct: 305 SGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVL 338

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 60.7 bits (147), Expect = 2e-12
 Identities = 19/95 (20%), Positives = 33/95 (34%), Gaps = 6/95 (6%)

Query: 2   PVIHVPNQLVGAPIDTDVTLECYVEAYPKSIN-YWVRDQGDMVISSERYEVESISRSIFD 60
            +I    +   A +   +TL C V      +N  W  D G  +          +      
Sbjct: 620 RIIPFAFEEGPAQVGQYLTLHCSVPGGDLPLNIDWTLD-GQAISEDLGITTSRVG----R 674

Query: 61  FKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
               LTI+ +     G++ C A+N  G  + +  L
Sbjct: 675 RGSVLTIEAVEASHAGNFTCHARNLAGHQQFTTPL 709

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 58.4 bits (141), Expect = 1e-11
 Identities = 22/94 (23%), Positives = 37/94 (39%), Gaps = 3/94 (3%)

Query: 2   PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDF 61
           P   +          +D  +EC  + +PK    W +  GD       Y+    S +I   
Sbjct: 715 PRWILEPTDKAFAQGSDAKVECKADGFPKPQVTWKKAVGDTPGE---YKDLKKSDNIRVE 771

Query: 62  KMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
           +  L +  I K + G Y C A N +G   S++ +
Sbjct: 772 EGTLHVDNIQKTNEGYYLCEAINGIGSGLSAVIM 805

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 54.6 bits (131), Expect = 2e-10
 Identities = 18/94 (19%), Positives = 27/94 (28%), Gaps = 16/94 (17%)

Query: 2   PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDF 61
               +                C     P     W++D G  +  SE              
Sbjct: 344 LSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKD-GKAIGHSESV------------ 390

Query: 62  KMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
              L I+ + K D G Y+C  +N     E+S  L
Sbjct: 391 ---LRIESVKKEDKGMYQCFVRNDRESAEASAEL 421

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 52.6 bits (126), Expect = 1e-09
 Identities = 19/92 (20%), Positives = 27/92 (29%), Gaps = 2/92 (2%)

Query: 2   PVIHV-PNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFD 60
           PV    P   +     T   +EC     P     W+R  G  V         S    +  
Sbjct: 39  PVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLV- 97

Query: 61  FKMRLTIKKITKYDLGSYKCIAKNSLGEVESS 92
           F          +     Y C+A+N  G + S 
Sbjct: 98  FPPFRAEDYRQEVHAQVYACLARNQFGSIISR 129

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 51.1 bits (122), Expect = 3e-09
 Identities = 19/92 (20%), Positives = 33/92 (35%), Gaps = 11/92 (11%)

Query: 2   PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDF 61
           P I    +         + + C V  YP     W RD    +  + + +V   + +    
Sbjct: 528 PYIRQMEKKA-IVAGETLIVTCPVAGYPIDSIVWERD-NRALPINRKQKVFP-NGT---- 580

Query: 62  KMRLTIKKITKY-DLGSYKCIAKNSLGEVESS 92
              L I+ + +  D  +Y C+AKN  G     
Sbjct: 581 ---LIIENVERNSDQATYTCVAKNQEGYSARG 609

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 40.3 bits (94), Expect = 2e-05
 Identities = 12/91 (13%), Positives = 28/91 (30%), Gaps = 8/91 (8%)

Query: 2   PVIHVPNQLVGAPIDTDVTLECYVEAY---PKSINYWVRDQGDMVISSERYEVESISRSI 58
                              ++C + ++      +  W  D+ +       Y+     + +
Sbjct: 139 QYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYD----GKYL 194

Query: 59  FDFKMRLTIKKITKYD-LGSYKCIAKNSLGE 88
                 L I+++   D   SY+C  K+ L  
Sbjct: 195 VLPSGELHIREVGPEDGYKSYQCRTKHRLTG 225

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197

 Score = 69.4 bits (170), Expect = 2e-16
 Identities = 18/94 (19%), Positives = 34/94 (36%), Gaps = 5/94 (5%)

Query: 2   PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDF 61
           P        V A     V+++      P  +  W +   D++ ++  Y+V         F
Sbjct: 105 PKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKG-QDLIDNNGHYQVIVTR----SF 159

Query: 62  KMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
              +    + + D G Y   AKN  G  + ++ L
Sbjct: 160 TSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVEL 193

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197

 Score = 58.2 bits (141), Expect = 4e-12
 Identities = 20/83 (24%), Positives = 33/83 (39%), Gaps = 4/83 (4%)

Query: 13 APIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITK 72
              ++ TL C V  +PK I  W R   +++    +Y ++           +L I  +T 
Sbjct: 16 VRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYH----QLIIASVTD 71

Query: 73 YDLGSYKCIAKNSLGEVESSIRL 95
           D   Y+  A N  G V  +  L
Sbjct: 72 DDATVYQVRATNQGGSVSGTASL 94

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score = 69.0 bits (169), Expect = 8e-16
 Identities = 23/96 (23%), Positives = 40/96 (41%), Gaps = 8/96 (8%)

Query: 2   PVIHVPNQLVGAPIDTDVTLECYVEAYPK-SINYWVRDQGDMVISSERYEVESISRSIFD 60
           PV       V      DV LEC ++  P   ++ W +D    + S ++Y++ S      +
Sbjct: 193 PVFRKKPHPVETLKGADVHLECELQGTPPFQVS-WHKD-KRELRSGKKYKIMSE-----N 245

Query: 61  FKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRLY 96
           F   + I  +   D+G Y+C A N +G       + 
Sbjct: 246 FLTSIHILNVDSADIGEYQCKASNDVGSYTCVGSIT 281

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score = 66.7 bits (163), Expect = 5e-15
 Identities = 22/94 (23%), Positives = 37/94 (39%), Gaps = 6/94 (6%)

Query: 2  PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDF 61
          P   +    V   +    T +C+V         W +D    +     Y++     ++ + 
Sbjct: 6  PFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKD-NREIRPGGNYKM-----TLVEN 59

Query: 62 KMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
             LT+ K+TK D G Y C A N  G+   S +L
Sbjct: 60 TATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQL 93

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score = 61.3 bits (149), Expect = 7e-13
 Identities = 19/93 (20%), Positives = 31/93 (33%), Gaps = 6/93 (6%)

Query: 3   VIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFK 62
            I           D     EC +   P+    W +D    +  S ++ +  +        
Sbjct: 101 FIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKD-ETEIQESSKFRMSFVESVA---- 155

Query: 63  MRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
             L +  ++  D G Y C A N+ G   SS  L
Sbjct: 156 -VLEMYNLSVEDSGDYTCEAHNAAGSASSSTSL 187

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 118

 Score = 64.8 bits (158), Expect = 2e-15
 Identities = 23/95 (24%), Positives = 36/95 (37%), Gaps = 5/95 (5%)

Query: 4  IHVP---NQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFD 60
          ++ P     L    +  +  +E  V   P    +W+ + G  +  S+   VE        
Sbjct: 5  VYYPPRVVSLEEPELRLEHCIEFVVRGNPPPTLHWLHN-GQPLRESKIIHVEYYQEGEIS 63

Query: 61 FKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
              L   K T Y+ G+Y  IAKN LG    +I  
Sbjct: 64 EGC-LLFNKPTHYNNGNYTLIAKNPLGTANQTING 97

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 64.4 bits (157), Expect = 3e-15
 Identities = 22/96 (22%), Positives = 29/96 (30%), Gaps = 10/96 (10%)

Query: 2  PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEV-ESISRSIFD 60
          PVI          +D    L C     P     W +D   +     R +  E+       
Sbjct: 9  PVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLENGV----- 63

Query: 61 FKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRLY 96
              L I+     D G Y CIA    GE   S  + 
Sbjct: 64 ----LQIRYAKLGDTGRYTCIASTPSGEATWSAYIE 95

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194

 Score = 65.9 bits (161), Expect = 4e-15
 Identities = 22/95 (23%), Positives = 35/95 (36%), Gaps = 8/95 (8%)

Query: 2   PVIHVPNQLVGAPIDTDVTLECYVEAYPK-SINYWVRDQGDMVISSERYEVESISRSIFD 60
           P      Q +     + V L+  V   P   +  + RD G  + SS  +++         
Sbjct: 104 PNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVV-KFYRD-GAEIQSSLDFQISQ-----EG 156

Query: 61  FKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
               L I +    D G+Y   A NS+G   S+  L
Sbjct: 157 DLYSLLIAEAYPEDSGTYSVNATNSVGRATSTAEL 191

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194

 Score = 59.3 bits (144), Expect = 1e-12
 Identities = 26/95 (27%), Positives = 40/95 (42%), Gaps = 4/95 (4%)

Query: 2  PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDF 61
          P    P Q V     +  T E ++  +P     W RD G ++ +S       +  S  D 
Sbjct: 6  PTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRD-GQVISTSTLPG---VQISFSDG 61

Query: 62 KMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRLY 96
          + +LTI  +TK + G Y   A N  G+  S+  L 
Sbjct: 62 RAKLTIPAVTKANSGRYSLKATNGSGQATSTAELL 96

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 116

 Score = 64.0 bits (156), Expect = 5e-15
 Identities = 23/95 (24%), Positives = 38/95 (40%), Gaps = 6/95 (6%)

Query: 2   PVIHVPNQLVGAPIDTDVTLECYVEAYPK-SINYWVRDQGDMVISSERYEVESISRSIFD 60
           P+     Q         V LEC + A P   + +W R+   +  +++R  +   +     
Sbjct: 16  PMFIYKPQSKKVLEGDSVKLECQISAIPPPKL-FWKRNNEMVQFNTDRISLYQDN----T 70

Query: 61  FKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
            ++ L IK + K D G Y   A N  G    + RL
Sbjct: 71  GRVTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRL 105

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212

 Score = 66.0 bits (161), Expect = 6e-15
 Identities = 23/91 (25%), Positives = 39/91 (42%), Gaps = 9/91 (9%)

Query: 2   PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDF 61
           PVI          +   V + C     P    YW+++Q  + +S+ RY ++         
Sbjct: 111 PVITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLKDGF------ 164

Query: 62  KMRLTIKKITKYDLGSYKCIAKNSLGEVESS 92
              L I+   + D G Y+C+A+NS+G   S 
Sbjct: 165 ---LQIENSREEDQGKYECVAENSMGTEHSK 192

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212

 Score = 49.4 bits (118), Expect = 8e-09
 Identities = 20/91 (21%), Positives = 33/91 (36%), Gaps = 5/91 (5%)

Query: 2  PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDF 61
          P I    Q  G  +    +  C     P     W ++   +  +  RY V      I   
Sbjct: 7  PEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGIS-- 64

Query: 62 KMRLTIKKITKY-DLGSYKCIAKNSLGEVES 91
             L I+ +    D   Y+C+A+N +G+  S
Sbjct: 65 --ILRIEPVRAGRDDAPYECVAENGVGDAVS 93

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score = 66.9 bits (163), Expect = 7e-15
 Identities = 10/94 (10%), Positives = 34/94 (36%), Gaps = 3/94 (3%)

Query: 2   PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDF 61
           P + +    +         + C   +   + + +++     +   ++        + +  
Sbjct: 187 PALTLVPAELVRIRGEAAQIVCSASSVDVNFDVFLQHNNTKLAIPQQS---DFHNNRYQK 243

Query: 62  KMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
            + L + ++     G+Y C+A N  G+  +S+  
Sbjct: 244 VLTLNLDQVDFQHAGNYSCVASNVQGKHSTSMFF 277

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score = 53.0 bits (127), Expect = 6e-10
 Identities = 20/95 (21%), Positives = 28/95 (29%), Gaps = 15/95 (15%)

Query: 2  PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDF 61
          PVI      +       VTL C      +    W    G        Y   S S      
Sbjct: 5  PVIEPSVPELVVKPGATVTLRCVGNGSVE----W---DGPPSPHWTLYSDGSSSI----- 52

Query: 62 KMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRLY 96
             L+    T  + G+Y+C          ++I LY
Sbjct: 53 ---LSTNNATFQNTGTYRCTEPGDPLGGSAAIHLY 84

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score = 48.8 bits (116), Expect = 2e-08
 Identities = 18/92 (19%), Positives = 26/92 (28%), Gaps = 9/92 (9%)

Query: 2   PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINY-WVRDQGDMVISSERYEVESISRSIFD 60
              +V  Q V    D D  L C +           VR +G  ++    Y           
Sbjct: 90  RPWNVLAQEVVVFEDQDALLPCLLTDPVLEAGVSLVRVRGRPLMRHTNYSFSP------- 142

Query: 61  FKMRLTIKKITKYDLGSYKCIAKNSLGEVESS 92
                TI +        Y+C A     +V S 
Sbjct: 143 -WHGFTIHRAKFIQSQDYQCSALMGGRKVMSI 173

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192

 Score = 64.7 bits (158), Expect = 1e-14
 Identities = 27/91 (29%), Positives = 34/91 (37%), Gaps = 9/91 (9%)

Query: 2   PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDF 61
           P I  P   V         L C     PK    W++     +  + R  V   S S    
Sbjct: 101 PKITRPPINVKIIEGLKAVLPCTTMGNPKPSVSWIKG-DSALRENSRIAVLE-SGS---- 154

Query: 62  KMRLTIKKITKYDLGSYKCIAKNSLGEVESS 92
              L I  + K D G Y+C+AKNSLG   S 
Sbjct: 155 ---LRIHNVQKEDAGQYRCVAKNSLGTAYSK 182

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192

 Score = 62.1 bits (151), Expect = 1e-13
 Identities = 27/91 (29%), Positives = 40/91 (43%), Gaps = 7/91 (7%)

Query: 2  PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDF 61
          PVI  P + V A ++   T  C VE+YP+    W R++  + +   RY +    +     
Sbjct: 8  PVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRENGQL---- 63

Query: 62 KMRLTIKKITKYDLGSYKCIAKNSLGEVESS 92
             LTI  +   D G Y C A N +G    S
Sbjct: 64 ---LTILSVEDSDDGIYCCTANNGVGGAVES 91

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 66.8 bits (163), Expect = 1e-14
 Identities = 22/94 (23%), Positives = 37/94 (39%), Gaps = 6/94 (6%)

Query: 2   PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDF 61
           P   +    V   +    T +C+V         W +D    +     Y++     ++ + 
Sbjct: 198 PFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKD-NREIRPGGNYKM-----TLVEN 251

Query: 62  KMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
              LT+ K+TK D G Y C A N  G+   S +L
Sbjct: 252 TATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQL 285

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 66.4 bits (162), Expect = 1e-14
 Identities = 23/94 (24%), Positives = 38/94 (40%), Gaps = 6/94 (6%)

Query: 2   PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDF 61
           PV       V      DV LEC ++  P     W +D    + S ++Y++ S      +F
Sbjct: 385 PVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKD-KRELRSGKKYKIMSE-----NF 438

Query: 62  KMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
              + I  +   D+G Y+C A N +G       +
Sbjct: 439 LTSIHILNVDSADIGEYQCKASNDVGSDTCVGSI 472

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 63.3 bits (154), Expect = 2e-13
 Identities = 28/94 (29%), Positives = 44/94 (46%), Gaps = 6/94 (6%)

Query: 2  PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDF 61
          P    P + V A I   +TL+C V+  P+    W ++    + S+  Y++        + 
Sbjct: 6  PYFIEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKE-HTKLRSAPAYKM-----QFKNN 59

Query: 62 KMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
             L I K+   D+G Y C A+NS+G V SS  L
Sbjct: 60 VASLVINKVDHSDVGEYTCKAENSVGAVASSAVL 93

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 62.1 bits (151), Expect = 4e-13
 Identities = 18/94 (19%), Positives = 32/94 (34%), Gaps = 5/94 (5%)

Query: 2   PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDF 61
           P        +   +  +V L+  +E        W +D+G++V  S+   +        + 
Sbjct: 478 PRFVKKLSDISTVVGEEVQLQATIEGAEPISVAWFKDKGEIVRESDNIWISYS-----EN 532

Query: 62  KMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
              L   +    + G Y C  KN  G  E    L
Sbjct: 533 IATLQFSRAEPANAGKYTCQIKNEAGTQECFATL 566

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 60.6 bits (147), Expect = 1e-12
 Identities = 19/93 (20%), Positives = 31/93 (33%), Gaps = 6/93 (6%)

Query: 3   VIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFK 62
            I           D     EC +   P+    W +D    +  S ++ +  +        
Sbjct: 293 FIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKD-ETEIQESSKFRMSFVESVA---- 347

Query: 63  MRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
             L +  ++  D G Y C A N+ G   SS  L
Sbjct: 348 -VLEMYNLSVEDSGDYTCEAHNAAGSASSSTSL 379

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 59.0 bits (143), Expect = 5e-12
 Identities = 21/95 (22%), Positives = 33/95 (34%), Gaps = 6/95 (6%)

Query: 2   PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDF 61
           P      + V   +   V  EC +         W +D G+++      +   I       
Sbjct: 102 PSFARKLKDVHETLGFPVAFECRINGSEPLQVSWYKD-GELLKDDANLQTSFIHNVA--- 157

Query: 62  KMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRLY 96
              L I +  +  +G Y C A N LG   SS +L 
Sbjct: 158 --TLQILQTDQSHVGQYNCSASNPLGTASSSAKLT 190

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score = 66.0 bits (161), Expect = 1e-14
 Identities = 22/91 (24%), Positives = 37/91 (40%), Gaps = 6/91 (6%)

Query: 2  PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDF 61
            + +    V   +       C     P+SI  W   QG+ +IS++R  V          
Sbjct: 5  LQVTISLSKVELSVGESKFFTCTAIGEPESI-DWYNPQGEKIISTQRVVV-----QKEGV 58

Query: 62 KMRLTIKKITKYDLGSYKCIAKNSLGEVESS 92
          + RLTI      D G Y+C A ++ G+ + +
Sbjct: 59 RSRLTIYNANIEDAGIYRCQATDAKGQTQEA 89

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score = 65.6 bits (160), Expect = 2e-14
 Identities = 25/96 (26%), Positives = 40/96 (41%), Gaps = 10/96 (10%)

Query: 2   PVIHVPNQL--VGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIF 59
           P I +P +     A    ++T  C     P+    W R+ G ++  +E+Y ++  +    
Sbjct: 193 PAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRN-GKLIEENEKYILKGSNTE-- 249

Query: 60  DFKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
                LT++ I   D G Y C A N  GE E    L
Sbjct: 250 -----LTVRNIINSDGGPYVCRATNKAGEDEKQAFL 280

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score = 49.8 bits (119), Expect = 8e-09
 Identities = 17/96 (17%), Positives = 34/96 (35%), Gaps = 10/96 (10%)

Query: 2   PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSE-RYEVESISRSIFD 60
                           D  + C V + P     W+    ++   S+ R+ + + + +   
Sbjct: 99  LTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLA-NNN--- 154

Query: 61  FKMRLTIKKITKYDLGSYKCIAKN-SLGEVESSIRL 95
               L I  I K D G Y+C  +  + GE++    +
Sbjct: 155 ----LQILNINKSDEGIYRCEGRVEARGEIDFRDII 186

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 62.4 bits (152), Expect = 1e-14
 Identities = 21/94 (22%), Positives = 34/94 (36%), Gaps = 8/94 (8%)

Query: 2  PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDF 61
          P+I          +D    L+C     P  +  W+++         R  ++         
Sbjct: 9  PIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQGT----- 63

Query: 62 KMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
             L IK +   D G+Y C+A +S GE   S  L
Sbjct: 64 ---LQIKNLRISDTGTYTCVATSSSGETSWSAVL 94

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} Length = 99

 Score = 62.3 bits (152), Expect = 1e-14
 Identities = 24/95 (25%), Positives = 33/95 (34%), Gaps = 7/95 (7%)

Query: 2  PVIHVPNQLVGAPIDTDVTLECYVEAYPK-SINYWVRDQGDMVISSERYEVESISRSIFD 60
          P   V           DV +   V+  PK  +  W+R+    V   +R   E     +  
Sbjct: 6  PTFKVSLMDQSVREGQDVIMSIRVQGEPKPVV-SWLRN-RQPVRPDQRRFAEEAEGGLC- 62

Query: 61 FKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
             RL I    + D G Y C A N  G  +   RL
Sbjct: 63 ---RLRILAAERGDAGFYTCKAVNEYGARQCEARL 94

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens} Length = 97

 Score = 62.3 bits (152), Expect = 1e-14
 Identities = 25/96 (26%), Positives = 37/96 (38%), Gaps = 7/96 (7%)

Query: 2  PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINY-WVRDQGDMVISSERYEVESISRSIFD 60
           ++              V   C +E Y +S    W       + +SE+YE+        D
Sbjct: 2  AMVSGQIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFG-VRQLENSEKYEITY-----ED 55

Query: 61 FKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRLY 96
              L +K ITK D G+Y+C   N  GE  S   L+
Sbjct: 56 GVAILYVKDITKLDDGTYRCKVVNDYGEDSSYAELF 91

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} Length = 108

 Score = 62.4 bits (152), Expect = 1e-14
 Identities = 20/96 (20%), Positives = 36/96 (37%), Gaps = 10/96 (10%)

Query: 2  PVIHVPNQLVGAPIDTDVTLECYVEAYPK-SINYWVRDQGDMVISSERYEVESISRSIFD 60
          P I    +     I   + + C     P   I  W +D  + ++      ++  +R+   
Sbjct: 11 PTITGNLENQTTSIGESIEVSCTASGNPPPQIM-WFKD-NETLVEDSGIVLKDGNRN--- 65

Query: 61 FKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRLY 96
              LTI+++ K D G Y C A + LG  +      
Sbjct: 66 ----LTIRRVRKEDEGLYTCQACSVLGCAKVEAFFI 97

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 114

 Score = 62.3 bits (152), Expect = 2e-14
 Identities = 19/94 (20%), Positives = 33/94 (35%), Gaps = 6/94 (6%)

Query: 2  PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDF 61
          P I    +         V L   V         W++     +  SE  +VE+      + 
Sbjct: 8  PQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKF-RKQIQESEHMKVEN-----SEN 61

Query: 62 KMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
            +LTI    +   G Y  + +N LG  ++ + L
Sbjct: 62 GSKLTILAARQEHCGCYTLLVENKLGSRQAQVNL 95

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score = 65.6 bits (160), Expect = 2e-14
 Identities = 24/94 (25%), Positives = 36/94 (38%), Gaps = 9/94 (9%)

Query: 2   PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDF 61
            +     + V A   T V LEC+    P     W R  G  +    R    +        
Sbjct: 206 KIEVQFPETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKARRHKSNGI------ 259

Query: 62  KMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
              L I    + D GSY+C+A+NS G+  +  +L
Sbjct: 260 ---LEIPNFQQEDAGSYECVAENSRGKNVAKGQL 290

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score = 62.5 bits (152), Expect = 3e-13
 Identities = 23/94 (24%), Positives = 41/94 (43%), Gaps = 10/94 (10%)

Query: 2   PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDF 61
           P        +   ++  V  EC     PK    W+++ GD +++ +R ++E  +      
Sbjct: 296 PNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLKN-GDPLLTRDRIQIEQGT------ 348

Query: 62  KMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
              L I  +   D G Y+C+A+N  G + SS  L
Sbjct: 349 ---LNITIVNLSDAGMYQCVAENKHGVIFSSAEL 379

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score = 45.6 bits (108), Expect = 3e-07
 Identities = 14/87 (16%), Positives = 29/87 (33%), Gaps = 9/87 (10%)

Query: 7   PNQLVGAPIDTDVTLECYV-EAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRL 65
               V       + L C       +    W+ ++      + R+  +            L
Sbjct: 108 TRSTVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSYQDNRRFVSQETGN--------L 159

Query: 66  TIKKITKYDLGSYKCIAKNSLGEVESS 92
            I K+ K D+G+Y C+  N++   +  
Sbjct: 160 YIAKVEKSDVGNYTCVVTNTVTNHKVL 186

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score = 45.6 bits (108), Expect = 3e-07
 Identities = 23/77 (29%), Positives = 31/77 (40%), Gaps = 9/77 (11%)

Query: 16 DTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKY-D 74
          +  V L C V+  PK    W  + G  V     +    +  S       L I    K  D
Sbjct: 23 EKKVKLSCEVKGNPKPHIRWKLN-GTDVDIGMDFRYSVVDGS-------LLINNPNKTQD 74

Query: 75 LGSYKCIAKNSLGEVES 91
           G+Y+CIA NS G + S
Sbjct: 75 AGTYQCIATNSFGTIVS 91

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1 Length = 122

 Score = 62.2 bits (151), Expect = 3e-14
 Identities = 26/98 (26%), Positives = 37/98 (37%), Gaps = 5/98 (5%)

Query: 2   PVIHVPNQLVGAPIDTDVTLECYVEAYPKSIN-YWVRDQGDMVISSE-RYEVESISRSIF 59
           P+I        A       ++C++ + P      W   +  +   +  RY VE+IS    
Sbjct: 15  PIISSTQT-QHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTE-E 72

Query: 60  DFKMRLTIKKITKYDLG-SYKCIAKNSLGEVESSIRLY 96
                LTI  I + D    Y C A NS G     IRL 
Sbjct: 73  GVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLK 110

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184

 Score = 63.5 bits (154), Expect = 3e-14
 Identities = 20/101 (19%), Positives = 33/101 (32%), Gaps = 12/101 (11%)

Query: 2   PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINY-WVRDQGDMVI-----SSERYEVESIS 55
           P +                L C  E+ P   ++ W +            S  R+ V S  
Sbjct: 84  PRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQ 143

Query: 56  RSIFDFKMRLTIKKIT-KYDLGSYKCIAKNSLGEVESSIRL 95
                    L I+ +  + D G Y+C   +S G  ++ I L
Sbjct: 144 GR-----SELHIENLNMEADPGQYRCNGTSSKGSDQAIITL 179

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184

 Score = 40.8 bits (95), Expect = 1e-05
 Identities = 8/77 (10%), Positives = 22/77 (28%), Gaps = 15/77 (19%)

Query: 13 APIDTDVTLECYVEAYPKSI--NYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKI 70
            + + + L C +      +  + W++    +V+  +    +               K  
Sbjct: 10 EDLGSKILLTCSLNDSATEVTGHRWLKG--GVVLKEDALPGQK-----------TEFKVD 56

Query: 71 TKYDLGSYKCIAKNSLG 87
          +    G Y C+      
Sbjct: 57 SDDQWGEYSCVFLPEPM 73

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens} Length = 99

 Score = 61.5 bits (150), Expect = 3e-14
 Identities = 25/95 (26%), Positives = 34/95 (35%), Gaps = 8/95 (8%)

Query: 2  PVIHVPNQLVGAPIDTDVTLECYVEAYPK-SINYWVRDQGDMVISSERYEVESISRSIFD 60
          PVI    Q      D+           P+ +   W +D G  +    +Y++         
Sbjct: 7  PVIVTGLQDTTVSSDSVAKFAVKATGEPRPTA-IWTKD-GKAITQGGKYKLSED-----K 59

Query: 61 FKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
              L I K    D G Y C  KNS G V SS +L
Sbjct: 60 GGFFLEIHKTDTSDSGLYTCTVKNSAGSVSSSCKL 94

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A Length = 106

 Score = 61.6 bits (150), Expect = 3e-14
 Identities = 19/96 (19%), Positives = 38/96 (39%), Gaps = 8/96 (8%)

Query: 2   PVIHVPNQLVGAPIDTDVTLECYVEAYPK-SINYWVRDQGDMVISSERYEVESISRSIFD 60
             I    + +           C  +  P  ++  W+R  G ++ +S R++V +       
Sbjct: 15  ARILTKPRSMTVYEGESARFSCDTDGEPVPTVT-WLRK-GQVLSTSARHQVTTT-----K 67

Query: 61  FKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRLY 96
           +K    I  +   D G+Y  + +NS G+ E+   L 
Sbjct: 68  YKSTFEISSVQASDEGNYSVVVENSEGKQEAEFTLT 103

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score = 64.9 bits (158), Expect = 4e-14
 Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 9/81 (11%)

Query: 16 DTDVTLECYVEAYPKSIN-YWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYD 74
          + +V L+C V    K  +  W +D    +   E+++ +       D    L I + +K D
Sbjct: 21 ECNVLLKCKVANIKKETHIVWYKD-EREISVDEKHDFK-------DGICTLLITEFSKKD 72

Query: 75 LGSYKCIAKNSLGEVESSIRL 95
           G Y+ I K+  G+ +S ++L
Sbjct: 73 AGIYEVILKDDRGKDKSRLKL 93

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score = 62.6 bits (152), Expect = 3e-13
 Identities = 17/94 (18%), Positives = 31/94 (32%), Gaps = 5/94 (5%)

Query: 2   PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDF 61
            V+     +V       + L C V   P     W+++    + S +   +    +     
Sbjct: 223 RVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKN-EKALASDDHCNL----KFEAGR 277

Query: 62  KMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
               TI  ++  D G Y  + KN  G   S   +
Sbjct: 278 TAYFTINGVSTADSGKYGLVVKNKYGSETSDFTV 311

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score = 50.3 bits (120), Expect = 6e-09
 Identities = 16/96 (16%), Positives = 28/96 (29%), Gaps = 7/96 (7%)

Query: 1   HPVIHVPNQLVGAPIDTDVTLECYVEAY-PKSINYWVRDQGDMVISSERYEVESISRSIF 59
             +      L        + L  +V  Y       W  + G  +  S+R +       I 
Sbjct: 107 KKIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHN-GSAIRYSDRVKTGVTGEQI- 164

Query: 60  DFKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
                L I + T  D G Y     +     + ++ L
Sbjct: 165 ----WLQINEPTPNDKGKYVMELFDGKTGHQKTVDL 196

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197

 Score = 63.2 bits (154), Expect = 4e-14
 Identities = 17/99 (17%), Positives = 32/99 (32%), Gaps = 10/99 (10%)

Query: 2   PVIHVPN---QLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSI 58
           P  H      +     + + + L       P     W      ++ +SE   +E+     
Sbjct: 101 PQFHPGYPLKEKYYGAVGSTLRLHVMYIGRPVPAMTWFHG-QKLLQNSENITIENTEHYT 159

Query: 59  FDFKMRLTIKKIT-KYDLGSYKCIAKNSLGEVESSIRLY 96
                 L +K +  K   G YK    N  G V++ + + 
Sbjct: 160 -----HLVMKNVQRKTHAGKYKVQLSNVFGTVDAILDVE 193

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197

 Score = 59.7 bits (145), Expect = 1e-12
 Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 6/83 (7%)

Query: 13 APIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITK 72
            +     L C +   P     W R  G  +I S +Y++ S  R+       LT+    +
Sbjct: 19 TKLGEAAQLSCQIVGRPLPDIKWYRF-GKELIQSRKYKMSSDGRT-----HTLTVMTEEQ 72

Query: 73 YDLGSYKCIAKNSLGEVESSIRL 95
           D G Y CIA N +GEVE+S +L
Sbjct: 73 EDEGVYTCIATNEVGEVETSSKL 95

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 100

 Score = 60.8 bits (148), Expect = 5e-14
 Identities = 17/84 (20%), Positives = 34/84 (40%), Gaps = 7/84 (8%)

Query: 13 APIDTDVTLECYVEAYPK-SINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKIT 71
                  ++  V   P   +  W  + G  V S + +++    + +      L  + + 
Sbjct: 17 IDEGRFCRMDFKVSGLPAPDV-SWYLN-GRTVQSDDLHKMIVSEKGLH----SLIFEVVR 70

Query: 72 KYDLGSYKCIAKNSLGEVESSIRL 95
            D G+Y C+AKN  GE   +++L
Sbjct: 71 ASDAGAYACVAKNRAGEATFTVQL 94

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 99

 Score = 60.8 bits (148), Expect = 6e-14
 Identities = 21/95 (22%), Positives = 34/95 (35%), Gaps = 11/95 (11%)

Query: 2  PVIHVPNQLVGAPIDTDVTLECYVEAYPK-SINYWVRDQGDMVISSERYEVESISRSIFD 60
          P      +        D  L+C V   P   I  W+ +   +  +    E          
Sbjct: 12 PSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRI-TWLLNGQPIQYARSTCEAGVAE----- 65

Query: 61 FKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
              L I+     D G+Y C+A+N+LG+V  S  +
Sbjct: 66 ----LHIQDALPEDHGTYTCLAENALGQVSCSAWV 96

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 61.3 bits (149), Expect = 7e-14
 Identities = 16/97 (16%), Positives = 35/97 (36%), Gaps = 10/97 (10%)

Query: 2   PVIHVPNQL---VGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSI 58
           P I +P  L       +   + L    +  P+    W +      + + R  V +     
Sbjct: 22  PKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKG--GAPLDTSRVHVRTS---- 75

Query: 59  FDFKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
            DF     +++  + D G Y+   +    +  ++IR+
Sbjct: 76  -DFDTVFFVRQAARSDSGEYELSVQIENMKDTATIRI 111

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201

 Score = 62.6 bits (152), Expect = 8e-14
 Identities = 25/96 (26%), Positives = 38/96 (39%), Gaps = 12/96 (12%)

Query: 2   PVIHVPNQLVGAPIDTDVTLECYVEAYPK-SINYWVRDQGDMVISSERYEVESISRSIFD 60
             I V  + V A +  +VTLEC+    P   I  W +   + + S+              
Sbjct: 114 ADIVVQFKDVYALMGQNVTLECFALGNPVPDIR-WRKV-LEPMPSTAEISTSGAV----- 166

Query: 61  FKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRLY 96
               L I  I   D G Y+C A+N  G+ +   R+Y
Sbjct: 167 ----LKIFNIQLEDEGIYECEAENIRGKDKHQARIY 198

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201

 Score = 46.4 bits (110), Expect = 9e-08
 Identities = 13/77 (16%), Positives = 28/77 (36%), Gaps = 8/77 (10%)

Query: 18 DVTLECYVEA-YPKSINY-WVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDL 75
           + L C     +P  ++Y W+ ++  + I+ ++       R +      L I  +   D 
Sbjct: 25 GMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDK------RRFVSQTNGNLYIANVEASDK 78

Query: 76 GSYKCIAKNSLGEVESS 92
          G+Y C   +        
Sbjct: 79 GNYSCFVSSPSITKSVF 95

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score = 64.1 bits (156), Expect = 9e-14
 Identities = 23/94 (24%), Positives = 35/94 (37%), Gaps = 8/94 (8%)

Query: 2   PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDF 61
                    V A    D  LEC V  YP     W+R +  + + S++Y +   S      
Sbjct: 222 LYFLQRPSNVIAIEGKDAVLECCVSGYPPPSFTWLRGEEVIQLRSKKYSLLGGSN----- 276

Query: 62  KMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
              L I  +T  D G+Y C+       + +S  L
Sbjct: 277 ---LLISNVTDDDSGTYTCVVTYKNENISASAEL 307

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score = 62.2 bits (151), Expect = 4e-13
 Identities = 27/96 (28%), Positives = 43/96 (44%), Gaps = 9/96 (9%)

Query: 1   HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFD 60
            P        + A    D+  EC V   P     W+++ GD+VI S+ +++   S     
Sbjct: 312 PPWFLNHPSNLYAYESMDIEFECAVSGKPVPTVNWMKN-GDVVIPSDYFQIVGGSN---- 366

Query: 61  FKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRLY 96
               L I  + K D G Y+C+A+N  G  +SS +L 
Sbjct: 367 ----LRILGVVKSDEGFYQCVAENEAGNAQSSAQLI 398

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score = 54.5 bits (131), Expect = 2e-10
 Identities = 20/93 (21%), Positives = 34/93 (36%), Gaps = 10/93 (10%)

Query: 2   PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVIS--SERYEVESISRSIF 59
                  + + A +   V L+C V   P    +W ++Q D+       R  V   S +  
Sbjct: 122 LRFLSQTESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVVLP-SGA-- 178

Query: 60  DFKMRLTIKKITKYDLGSYKCIAKNSLGEVESS 92
                L I ++   D G Y+C A+N       +
Sbjct: 179 -----LQISRLQPGDSGVYRCSARNPASTRTGN 206

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score = 41.4 bits (97), Expect = 8e-06
 Identities = 15/92 (16%), Positives = 28/92 (30%), Gaps = 4/92 (4%)

Query: 2   PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINY-WVRDQGDMVISSERYEVESISRSIFD 60
                           +V L C  E+        W +D   + +  +  + +  + S   
Sbjct: 22  LHFVSEPSDAVTMRGGNVLLNCSAESDRGVPVIKWKKDGLILALGMDDRKQQLPNGS--L 79

Query: 61  FKMRLTIKKITKYDLGSYKCIAK-NSLGEVES 91
               +   +  K D G Y+C A     G + S
Sbjct: 80  LIQNILHSRHHKPDEGLYQCEASLGDSGSIIS 111

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 63.1 bits (153), Expect = 2e-13
 Identities = 20/95 (21%), Positives = 34/95 (35%), Gaps = 2/95 (2%)

Query: 2   PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINY-WVRDQGDMVISSERYEVESISRSIFD 60
           PV+ V           + T+ C ++    S+   W R+        E+Y         ++
Sbjct: 212 PVVSVSKASYLLREGEEFTVTCTIKDVSSSVYSTWKRE-NSQTKLQEKYNSWHHGDFNYE 270

Query: 61  FKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
            +  LTI      D G + C A N+ G    +  L
Sbjct: 271 RQATLTISSARVNDSGVFMCYANNTFGSANVTTTL 305

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 60.5 bits (146), Expect = 2e-12
 Identities = 17/96 (17%), Positives = 34/96 (35%), Gaps = 2/96 (2%)

Query: 2   PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINY-WVRDQGDMVISSERYEVESISRSIFD 60
            +  + N  V      +V L    EA+PK  +  W+               +S + S   
Sbjct: 314 NIFPMINTTVFVNDGENVDLIVEYEAFPKPEHQQWIYM-NRTFTDKWEDYPKSENESNIR 372

Query: 61  FKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRLY 96
           +   L + ++   + G+Y  +  NS      +  +Y
Sbjct: 373 YVSELHLTRLKGTEGGTYTFLVSNSDVNAAIAFNVY 408

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 57.8 bits (139), Expect = 1e-11
 Identities = 13/100 (13%), Positives = 33/100 (33%), Gaps = 6/100 (6%)

Query: 3   VIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDM------VISSERYEVESISR 56
            ++   +++      +  L+C    +P+    W    G        V+  +   + S   
Sbjct: 408 YVNTKPEILTYDRLVNGMLQCVAAGFPEPTIDWYFCPGTEQRCSASVLPVDVQTLNSSGP 467

Query: 57  SIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRLY 96
                 ++ +I        G+ +C A N +G+  +     
Sbjct: 468 PFGKLVVQSSIDSSAFKHNGTVECKAYNDVGKTSAYFNFA 507

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 47.7 bits (113), Expect = 6e-08
 Identities = 15/92 (16%), Positives = 28/92 (30%), Gaps = 9/92 (9%)

Query: 2   PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDF 61
             + + ++ +    D D  + C +     +       QG  +    R+        I D 
Sbjct: 115 AKLFLVDRSLYGKEDNDTLVRCPLTDPEVTNYSLKGCQGKPLPKDLRF--------IPDP 166

Query: 62  KMRLTIKKITK-YDLGSYKCIAKNSLGEVESS 92
           K  + IK + + Y      C        V S 
Sbjct: 167 KAGIMIKSVKRAYHRLCLHCSVDQEGKSVLSE 198

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 40.4 bits (94), Expect = 2e-05
 Identities = 16/95 (16%), Positives = 31/95 (32%), Gaps = 21/95 (22%)

Query: 2   PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDF 61
           P IH     +   +  ++ L C    + K    W  +  D    +++             
Sbjct: 37  PSIHPGKSDLIVRVGDEIRLLCTDPGFVK----WTFEILDETNENKQN------------ 80

Query: 62  KMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRLY 96
                 +K    + G Y C  K+ L    +SI ++
Sbjct: 81  --EWITEKAEATNTGKYTCTNKHGLS---NSIYVF 110

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A Length = 154

 Score = 60.6 bits (147), Expect = 3e-13
 Identities = 22/83 (26%), Positives = 34/83 (40%), Gaps = 5/83 (6%)

Query: 13  APIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITK 72
               +    +C VE YP     W +D  + V  S  ++++       +    LTI ++  
Sbjct: 53  VVEGSAARFDCKVEGYPDPEVMWFKD-DNPVKESRHFQIDYDE----EGNCSLTISEVCG 107

Query: 73  YDLGSYKCIAKNSLGEVESSIRL 95
            D   Y C A NSLGE   +  L
Sbjct: 108 DDDAKYTCKAVNSLGEATCTAEL 130

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 59.3 bits (144), Expect = 3e-13
 Identities = 23/96 (23%), Positives = 34/96 (35%), Gaps = 6/96 (6%)

Query: 2  PVIHVPNQLVGAPIDTDVTLECYVEAYPK-SINYWVRDQGDMVISSERYEVESISRSIFD 60
          P   +  +         VT  C V   PK  I YW +D   +   S+ Y ++        
Sbjct: 9  PFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKI-YWFKDGKQISPKSDHYTIQRDLDGTC- 66

Query: 61 FKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRLY 96
              L     T  D G+Y  +A N  G +  + RL 
Sbjct: 67 ---SLHTTASTLDDDGNYTIMAANPQGRISCTGRLM 99

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score = 62.6 bits (152), Expect = 3e-13
 Identities = 26/94 (27%), Positives = 36/94 (38%), Gaps = 10/94 (10%)

Query: 2   PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDF 61
           P          A I +D+   C     P+    W+RD G  + S  R EV          
Sbjct: 295 PDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRD-GQPLASQNRIEVSGGE------ 347

Query: 62  KMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
              L   K+   D G Y+C+A+N  G V +S  L
Sbjct: 348 ---LRFSKLVLEDSGMYQCVAENKHGTVYASAEL 378

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score = 61.4 bits (149), Expect = 8e-13
 Identities = 20/94 (21%), Positives = 29/94 (30%), Gaps = 12/94 (12%)

Query: 2   PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDF 61
            +         A     VTLEC+    P     W +  G         E           
Sbjct: 208 SIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSKWLSSE----------- 256

Query: 62  KMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
              L I+ +   D G+Y+C A+N  G      R+
Sbjct: 257 -PLLHIQNVDFEDEGTYECEAENIKGRDTYQGRI 289

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score = 44.8 bits (106), Expect = 5e-07
 Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 11/78 (14%)

Query: 16 DTDVTLECYVEAYPKSINYWVRDQGDMVISSE-RYEVESISRSIFDFKMRLTIKKITKY- 73
          +  VTL C   A P +   W  +  ++ +  + RY + +           L I    K  
Sbjct: 22 EEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAGD---------LVISNPVKAK 72

Query: 74 DLGSYKCIAKNSLGEVES 91
          D GSY+C+A N+ G V S
Sbjct: 73 DAGSYQCVATNARGTVVS 90

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score = 44.5 bits (105), Expect = 7e-07
 Identities = 18/90 (20%), Positives = 29/90 (32%), Gaps = 7/90 (7%)

Query: 7   PNQLVGAPIDTDVTLECYVEA-YPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRL 65
               V       V   C     YP     W+ ++    I ++        R +      L
Sbjct: 107 ERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADG------RRFVSQTTGNL 160

Query: 66  TIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
            I K    DLG+Y C A + +  +  S+  
Sbjct: 161 YIAKTEASDLGNYSCFATSHIDFITKSVFS 190

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} Length = 215

 Score = 61.4 bits (149), Expect = 3e-13
 Identities = 24/95 (25%), Positives = 40/95 (42%), Gaps = 7/95 (7%)

Query: 2   PVIHVPNQLVGAPIDTDVTLECYVEAYPK-SINYWVRDQGDMVISSERYEVESISRSIFD 60
           P +  P  +        V + C V AYP  +I+ W RD G ++ SS    ++  +     
Sbjct: 20  PKLQGPVAVY-TWEGNQVNITCEVFAYPSATIS-WFRD-GQLLPSSNYSNIKIYNT---P 73

Query: 61  FKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
               L +   ++ D G+Y C A N +G+      L
Sbjct: 74  SASYLEVTPDSENDFGNYNCTAVNRIGQESLEFIL 108

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212

 Score = 61.4 bits (149), Expect = 3e-13
 Identities = 23/91 (25%), Positives = 35/91 (38%), Gaps = 3/91 (3%)

Query: 2   PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDF 61
           P I +  QL         T+ C     P     W +D    V +S       I +   + 
Sbjct: 109 PTIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKD-FLPVDTSN--NNGRIKQLRSES 165

Query: 62  KMRLTIKKITKYDLGSYKCIAKNSLGEVESS 92
              L I++  + D G Y+C+A NS G   S+
Sbjct: 166 IGALQIEQSEESDQGKYECVATNSAGTRYSA 196

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212

 Score = 51.0 bits (122), Expect = 3e-09
 Identities = 21/95 (22%), Positives = 33/95 (34%), Gaps = 6/95 (6%)

Query: 2  PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDF 61
          P                 +  C     P+    W +  G  V +     +E    S    
Sbjct: 7  PRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKK-GKKVSNQRFEVIEFDDGSGS-- 63

Query: 62 KMRLTIKKI-TKYDLGSYKCIAKNSLGEVESSIRL 95
             L I+ + T  D   Y+C+A N++GE+  S RL
Sbjct: 64 --VLRIQPLRTPRDEAIYECVASNNVGEISVSTRL 96

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score = 62.1 bits (151), Expect = 5e-13
 Identities = 20/94 (21%), Positives = 36/94 (38%), Gaps = 4/94 (4%)

Query: 2   PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDF 61
           P       +  +     + + C V++ P +  +W RD   ++ +     +++ S      
Sbjct: 101 PKFISNQTIYYSWEGNPINISCDVKSNPPASIHWRRD-KLVLPAKNTTNLKTYS---TGR 156

Query: 62  KMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
           KM L I   +  D G Y C A N +G       L
Sbjct: 157 KMILEIAPTSDNDFGRYNCTATNHIGTRFQEYIL 190

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score = 59.8 bits (145), Expect = 3e-12
 Identities = 22/95 (23%), Positives = 34/95 (35%), Gaps = 3/95 (3%)

Query: 2  PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVES-ISRSIFD 60
           +I + N+      +  VTL C  E  P     W R       +     ++  I      
Sbjct: 3  HIIQLKNETT--YENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQH 60

Query: 61 FKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
              L IK +   D G Y C A + +G  + S+ L
Sbjct: 61 GSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYL 95

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A Length = 93

 Score = 58.1 bits (141), Expect = 5e-13
 Identities = 17/94 (18%), Positives = 28/94 (29%), Gaps = 6/94 (6%)

Query: 2  PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDF 61
          P I   ++ +         LE      P     W          +    V++        
Sbjct: 3  PKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVG-DSGAALAPELLVDAK-----SS 56

Query: 62 KMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
             +      + D G+YK   KN LGE E+   +
Sbjct: 57 TTSIFFPSAKRADSGNYKLKVKNELGEDEAIFEV 90

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 62.1 bits (150), Expect = 5e-13
 Identities = 19/94 (20%), Positives = 35/94 (37%), Gaps = 8/94 (8%)

Query: 2   PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDF 61
           P I    +     I   + + C     P     W +D  + ++      ++  +R+    
Sbjct: 667 PTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKD-NETLVEDSGIVLKDGNRN---- 721

Query: 62  KMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
              LTI+++ K D G Y C A + LG  +     
Sbjct: 722 ---LTIRRVRKEDEGLYTCQACSVLGCAKVEAFF 752

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 57.5 bits (138), Expect = 2e-11
 Identities = 18/94 (19%), Positives = 35/94 (37%), Gaps = 11/94 (11%)

Query: 2   PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDF 61
                   LV A +   V +      YP     W ++ G  + S+   +   +       
Sbjct: 331 AFGSGMESLVEATVGERVRIPAKYLGYPPPEIKWYKN-GIPLESNHTIKAGHV------- 382

Query: 62  KMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
              LTI ++++ D G+Y  I  N + + + S  +
Sbjct: 383 ---LTIMEVSERDTGNYTVILTNPISKEKQSHVV 413

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 56.3 bits (135), Expect = 5e-11
 Identities = 16/98 (16%), Positives = 33/98 (33%), Gaps = 4/98 (4%)

Query: 2   PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRS---- 57
            V+  P+  +   +   + L C           +  +        ++     +       
Sbjct: 225 DVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSE 284

Query: 58  IFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
           +  F   LTI  +T+ D G Y C A + L   ++S  +
Sbjct: 285 MKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFV 322

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 55.1 bits (132), Expect = 1e-10
 Identities = 19/94 (20%), Positives = 36/94 (38%), Gaps = 7/94 (7%)

Query: 2   PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDF 61
           P + +   ++    +T + + C  +        W+    +   S +R EV   S     F
Sbjct: 32  PRLSIQKDILTIKANTTLQITCRGQRDLD----WLWP-NNQSGSEQRVEVTECSDG--LF 84

Query: 62  KMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
              LTI K+   D G+YKC  + +       + +
Sbjct: 85  CKTLTIPKVIGNDTGAYKCFYRETDLASVIYVYV 118

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 51.7 bits (123), Expect = 2e-09
 Identities = 13/94 (13%), Positives = 25/94 (26%), Gaps = 7/94 (7%)

Query: 2   PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDF 61
                    +    +  V + C       +++   R      +           R  +D 
Sbjct: 129 VSDQHGVVYITENKNKTVVIPCLGSISNLNVSLCARYPEKRFVPDGN-------RISWDS 181

Query: 62  KMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
           K   TI        G   C AK +    +S + +
Sbjct: 182 KKGFTIPSYMISYAGMVFCEAKINDESYQSIMYI 215

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 51.3 bits (122), Expect = 3e-09
 Identities = 14/113 (12%), Positives = 32/113 (28%), Gaps = 21/113 (18%)

Query: 4   IHVPNQLVGAPIDT-----DVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSI 58
           +    ++   P         V+L C  +        W +  G   +     E+ +     
Sbjct: 547 VTRGPEITLQPDMQPTEQESVSLWCTADRSTFENLTWYKL-GPQPLPIHVGELPTPVCKN 605

Query: 59  FDFKMR---------------LTIKKITKYDLGSYKCIAKNSLGEVESSIRLY 96
            D   +               + +K  +  D G Y C+A++   +    +   
Sbjct: 606 LDTLWKLNATMFSNSTNDILIMELKNASLQDQGDYVCLAQDRKTKKRHCVVRQ 658

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 44.0 bits (103), Expect = 1e-06
 Identities = 21/126 (16%), Positives = 31/126 (24%), Gaps = 31/126 (24%)

Query: 2   PVIH---VPNQLVGAPIDTDVTLECYVEAYPKSINY-WVRDQGDMVISSERYEVESISRS 57
           P I    + + +      T  TL C V A P   +  W     +   +     V   +  
Sbjct: 421 PQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPPHHIHWYWQLEEECANEPSQAVSVTNPY 480

Query: 58  IF---------------------------DFKMRLTIKKITKYDLGSYKCIAKNSLGEVE 90
                                          K   T+          YKC A N +G  E
Sbjct: 481 PCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVSTLVIQAANVSALYKCEAVNKVGRGE 540

Query: 91  SSIRLY 96
             I  +
Sbjct: 541 RVISFH 546

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 58.5 bits (142), Expect = 5e-13
 Identities = 20/79 (25%), Positives = 31/79 (39%), Gaps = 7/79 (8%)

Query: 18 DVTLECYVEAYPK-SINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLG 76
             ++C V   P   +  W  D G  V     +++      +      L I+ +T  D G
Sbjct: 26 LCRMDCKVSGLPTPDL-SWQLD-GKPVRPDSAHKMLVRENGVH----SLIIEPVTSRDAG 79

Query: 77 SYKCIAKNSLGEVESSIRL 95
           Y CIA N  G+   S+ L
Sbjct: 80 IYTCIATNRAGQNSFSLEL 98

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4 Length = 99

 Score = 58.4 bits (142), Expect = 5e-13
 Identities = 21/95 (22%), Positives = 30/95 (31%), Gaps = 7/95 (7%)

Query: 2  PVIHVPNQLVGAPIDTDVTLECYVEAYPK-SINYWVRDQGDMVISSERYEVESISRSIFD 60
          P I    Q       +D      V   P      W ++ G  +  S+R        ++  
Sbjct: 6  PKIFERIQSQTVGQGSDAHFRVRVVGKPDPEC-EWYKN-GVKIERSDRIYWYWPEDNVC- 62

Query: 61 FKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
              L I+ +T  D  S    A N  GE  S   L
Sbjct: 63 ---ELVIRDVTGEDSASIMVKAINIAGETSSHAFL 94

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score = 61.5 bits (149), Expect = 6e-13
 Identities = 12/94 (12%), Positives = 29/94 (30%), Gaps = 3/94 (3%)

Query: 2   PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDF 61
           P I +    +         + C         N  ++     +      +      + +  
Sbjct: 187 PQIKLEPSKLVRIRGEAAQIVCSATNAEVGFNVILKRGDTKLEIPLNSD---FQDNYYKK 243

Query: 62  KMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
              L++  +   D G Y C+A N +G   +++  
Sbjct: 244 VRALSLNAVDFQDAGIYSCVASNDVGTRTATMNF 277

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score = 53.4 bits (128), Expect = 5e-10
 Identities = 19/95 (20%), Positives = 29/95 (30%), Gaps = 15/95 (15%)

Query: 2  PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDF 61
          PVI      +       VTL C      +    W              + ES   +    
Sbjct: 5  PVIEPSGPELVVEPGETVTLRCVSNGSVE----WDGPIS----PYWTLDPESPGST---- 52

Query: 62 KMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRLY 96
             LT +  T  + G+Y+C          ++I LY
Sbjct: 53 ---LTTRNATFKNTGTYRCTELEDPMAGSTTIHLY 84

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score = 46.9 bits (111), Expect = 8e-08
 Identities = 16/92 (17%), Positives = 28/92 (30%), Gaps = 9/92 (9%)

Query: 2   PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINY-WVRDQGDMVISSERYEVESISRSIFD 60
              ++  Q V      +  L C +       +   +R+ G  V+    Y         F 
Sbjct: 90  HSWNLLAQEVTVVEGQEAVLPCLITDPALKDSVSLMREGGRQVLRKTVY--------FFS 141

Query: 61  FKMRLTIKKITKYDLGSYKCIAKNSLGEVESS 92
                 I+K    D  +Y C    +  E  S+
Sbjct: 142 PWRGFIIRKAKVLDSNTYVCKTMVNGRESTST 173

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A Length = 222

 Score = 60.8 bits (147), Expect = 6e-13
 Identities = 16/95 (16%), Positives = 27/95 (28%), Gaps = 3/95 (3%)

Query: 1   HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFD 60
                    LV  P+ ++  L C  E YPK+   W      ++              +F+
Sbjct: 116 PYNKINQRILVVDPVTSEHELTCQAEGYPKAEVIWTSSDHQVLSGKTTTTNSKREEKLFN 175

Query: 61  FKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
               L I          + C  +    E   +  L
Sbjct: 176 VTSTLRINTT---TNEIFYCTFRRLDPEENHTAEL 207

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A Length = 222

 Score = 38.1 bits (88), Expect = 1e-04
 Identities = 16/99 (16%), Positives = 30/99 (30%), Gaps = 17/99 (17%)

Query: 4   IHVPNQLVGAPIDTDVTLECYVEAYPKSIN---YWVRDQGDMVISSERYEVESISRSIFD 60
           + VP  L      +++T+EC      +          +  D  I    +  E +      
Sbjct: 4   VTVPKDLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSS 63

Query: 61  FKMR--------------LTIKKITKYDLGSYKCIAKNS 85
           ++ R              L I  +   D G Y+C+    
Sbjct: 64  YRQRARLLKDQLSLGNAALQITDVKLQDAGVYRCMISYG 102

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A Length = 100

 Score = 58.2 bits (141), Expect = 7e-13
 Identities = 16/92 (17%), Positives = 31/92 (33%), Gaps = 5/92 (5%)

Query: 4  IHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKM 63
            +  +L   P    V   C     P     W+++ G       R         + +   
Sbjct: 11 EKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKN-GKEFKQEHRIG----GYKVRNQHW 65

Query: 64 RLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
           L ++ +   D G+Y C+ +N  G +  +  L
Sbjct: 66 SLIMESVVPSDKGNYTCVVENEYGSINHTYHL 97

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score = 61.3 bits (148), Expect = 8e-13
 Identities = 26/102 (25%), Positives = 43/102 (42%), Gaps = 8/102 (7%)

Query: 2   PVIHVP-NQLVGAPIDTDVTLECYVEAYPKSINYWVRD-----QGDMVISSERYEVESIS 55
           PVI  P N+ +   + + + L C V      I YW  +     + D V+  + Y VE+ +
Sbjct: 209 PVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPA 268

Query: 56  RSIFDFKMR-LTIKKITKYDL-GSYKCIAKNSLGEVESSIRL 95
                  +  L I +I        + C AKN+ G   + I+L
Sbjct: 269 NKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQL 310

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score = 53.2 bits (127), Expect = 6e-10
 Identities = 15/90 (16%), Positives = 29/90 (32%), Gaps = 7/90 (7%)

Query: 7  PNQLVGAPIDTDVTLECYVEAYPKSINY-WVRDQGDMVISSERYEVESISRSIFDFKMRL 65
             ++ +  +      C +          W +D     +S+E+      +  I   K +L
Sbjct: 11 EKIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQ------ASRIHQHKEKL 64

Query: 66 TIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
                  D G Y C+ +NS   +   I  
Sbjct: 65 WFVPAKVEDSGHYYCVVRNSSYCLRIKISA 94

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score = 40.5 bits (94), Expect = 2e-05
 Identities = 16/87 (18%), Positives = 31/87 (35%), Gaps = 15/87 (17%)

Query: 14  PIDTDVTLECYVEAYPKSINY------WVRDQGDMVISSERYEVESISRSIFDFKMRLTI 67
           P+  D  L C    + K+ N       W +D   +++ +  +            K RL +
Sbjct: 116 PVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGV---------KDRLIV 166

Query: 68  KKITKYDLGSYKCIAKNSLGEVESSIR 94
             + +   G+Y C A  +    +  I 
Sbjct: 167 MNVAEKHRGNYTCHASYTYLGKQYPIT 193

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290

 Score = 60.9 bits (147), Expect = 8e-13
 Identities = 20/96 (20%), Positives = 36/96 (37%), Gaps = 2/96 (2%)

Query: 2   PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINY-WVRD-QGDMVISSERYEVESISRSIF 59
           PV+ VP            T+ C ++    S+N  W++       I+  ++         +
Sbjct: 189 PVVSVPETSHLLKKGDTFTVVCTIKDVSTSVNSMWLKMNPQPQHIAQVKHNSWHRGDFNY 248

Query: 60  DFKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
           + +  LTI      D G + C A N+ G    +  L
Sbjct: 249 ERQETLTISSARVDDSGVFMCYANNTFGSANVTTTL 284

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290

 Score = 47.8 bits (113), Expect = 5e-08
 Identities = 13/92 (14%), Positives = 31/92 (33%), Gaps = 9/92 (9%)

Query: 2   PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDF 61
             + +    +    D+D  + C +     S    +   G  + +   +        + + 
Sbjct: 92  AKLFLVGLPLFGKEDSDALVRCPLTDPQVSQYSLIECDGKSLPTDLTF--------VPNP 143

Query: 62  KMRLTIKKITK-YDLGSYKCIAKNSLGEVESS 92
           K  +TIK + + Y     +C A+     + S 
Sbjct: 144 KAGITIKNVKRAYHRLCVRCAAQRDGTWLHSD 175

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290

 Score = 36.2 bits (83), Expect = 5e-04
 Identities = 16/95 (16%), Positives = 27/95 (28%), Gaps = 20/95 (21%)

Query: 2  PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDF 61
          P IH     +       ++L C        +  W                   +  + + 
Sbjct: 13 PSIHPAQSELIVEAGDTLSLTCIDPD---FVR-WTFK-------------TYFNEMVENK 55

Query: 62 KMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRLY 96
          K     +K      G+Y C   N L    SSI ++
Sbjct: 56 KNEWIQEKAEATRTGTYTCSNSNGLT---SSIYVF 87

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207

 Score = 60.3 bits (146), Expect = 8e-13
 Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 9/81 (11%)

Query: 16  DTDVTLECYVEAYPKSIN-YWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYD 74
           + +V L+C V    K  +  W +D    +   E+++ +       D    L I + +K D
Sbjct: 131 ECNVLLKCKVANIKKETHIVWYKD-EREISVDEKHDFK-------DGICTLLITEFSKKD 182

Query: 75  LGSYKCIAKNSLGEVESSIRL 95
            G Y+ I K+  G+ +S ++L
Sbjct: 183 AGIYEVILKDDRGKDKSRLKL 203

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207

 Score = 45.7 bits (108), Expect = 2e-07
 Identities = 8/76 (10%), Positives = 26/76 (34%), Gaps = 5/76 (6%)

Query: 18 DVTLECYVEA-YPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLG 76
           V      E     +   ++ +    +    +Y++     +     + + ++K+   D G
Sbjct: 19 QVRFWMQAEKLSGNAKVNYIFN-EKEIFEGPKYKMHIDRNTGI---IEMFMEKLQDEDEG 74

Query: 77 SYKCIAKNSLGEVESS 92
          +Y    ++      S+
Sbjct: 75 TYTFQLQDGKATNHST 90

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 61.1 bits (148), Expect = 9e-13
 Identities = 23/91 (25%), Positives = 37/91 (40%), Gaps = 10/91 (10%)

Query: 2   PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDF 61
           P I   N       D  V L C  E    +  +WV      +  S R ++ + +R+    
Sbjct: 291 PFITSNNSNPVEDEDA-VALTCEPEIQNTTYLWWVN--NQSLPVSPRLQLSNDNRT---- 343

Query: 62  KMRLTIKKITKYDLGSYKCIAKNSLGEVESS 92
              LT+  +T+ D+G Y+C  +N L    S 
Sbjct: 344 ---LTLLSVTRNDVGPYECGIQNELSVDHSD 371

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 61.1 bits (148), Expect = 1e-12
 Identities = 20/91 (21%), Positives = 34/91 (37%), Gaps = 9/91 (9%)

Query: 2   PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDF 61
                 N          V   C  EA   +  +WV  Q   +  S R ++ + +R+    
Sbjct: 468 KPSISSNNSKPVEDKDAVAFTCEPEAQNTTYLWWVNGQS--LPVSPRLQLSNGNRT---- 521

Query: 62  KMRLTIKKITKYDLGSYKCIAKNSLGEVESS 92
              LT+  +T+ D  +Y C  +NS+    S 
Sbjct: 522 ---LTLFNVTRNDARAYVCGIQNSVSANRSD 549

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 60.7 bits (147), Expect = 1e-12
 Identities = 20/90 (22%), Positives = 34/90 (37%), Gaps = 9/90 (10%)

Query: 2   PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDF 61
                 N          V   C  E    +  +WV +Q   +  S R ++ + +R+    
Sbjct: 112 KPSISSNNSKPVEDKDAVAFTCEPETQDATYLWWVNNQS--LPVSPRLQLSNGNRT---- 165

Query: 62  KMRLTIKKITKYDLGSYKCIAKNSLGEVES 91
              LT+  +T+ D  SYKC  +N +    S
Sbjct: 166 ---LTLFNVTRNDTASYKCETQNPVSARRS 192

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 51.1 bits (122), Expect = 3e-09
 Identities = 16/94 (17%), Positives = 27/94 (28%), Gaps = 17/94 (18%)

Query: 2   PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDF 61
               +           ++ L C+  + P     W  + G     ++              
Sbjct: 560 DTPIISPPDSSYLSGANLNLSCHSASNPSPQYSWRIN-GIPQQHTQV------------- 605

Query: 62  KMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
              L I KIT  + G+Y C   N      +SI  
Sbjct: 606 ---LFIAKITPNNNGTYACFVSNLATGRNNSIVK 636

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 50.7 bits (121), Expect = 4e-09
 Identities = 16/94 (17%), Positives = 31/94 (32%), Gaps = 17/94 (18%)

Query: 2   PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDF 61
               +           +++L C+  + P +   W+ D G++   ++              
Sbjct: 382 DDPTISPSYTYYRPGVNLSLSCHAASNPPAQYSWLID-GNIQQHTQE------------- 427

Query: 62  KMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
              L I  IT+ + G Y C A NS      +   
Sbjct: 428 ---LFISNITEKNSGLYTCQANNSASGHSRTTVK 458

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 47.3 bits (112), Expect = 7e-08
 Identities = 17/95 (17%), Positives = 29/95 (30%), Gaps = 17/95 (17%)

Query: 2   PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDF 61
               +           ++ L C+  + P +   W  + G    S++              
Sbjct: 204 DAPTISPLNTSYRSGENLNLSCHAASNPPAQYSWFVN-GTFQQSTQE------------- 249

Query: 62  KMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRLY 96
              L I  IT  + GSY C A NS   +  +    
Sbjct: 250 ---LFIPNITVNNSGSYTCQAHNSDTGLNRTTVTT 281

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 41.1 bits (96), Expect = 1e-05
 Identities = 12/85 (14%), Positives = 24/85 (28%), Gaps = 10/85 (11%)

Query: 18  DVTLECYVEAYPKSINYWVRDQ----GDMVISSERYEVESISRSIFDFKMR------LTI 67
           +V L  +          W + +       +I       ++     +  +        L I
Sbjct: 16  EVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREIIYPNASLLI 75

Query: 68  KKITKYDLGSYKCIAKNSLGEVESS 92
           + I + D G Y      S    E +
Sbjct: 76  QNIIQNDTGFYTLHVIKSDLVNEEA 100

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 57.4 bits (139), Expect = 1e-12
 Identities = 17/94 (18%), Positives = 31/94 (32%), Gaps = 11/94 (11%)

Query: 2  PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDF 61
              V  +         + L C +    +SIN W+RD G  +  S R  +          
Sbjct: 4  GSSGVEVESFLVHPGDLLQLRCRLRDDVQSIN-WLRD-GVQLAESNRTRITG-------- 53

Query: 62 KMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
             + ++     D G Y C+  +  G   +   +
Sbjct: 54 -EEVEVQDSVPADSGLYACVTSSPSGSDTTYFSV 86

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331

 Score = 60.5 bits (146), Expect = 1e-12
 Identities = 17/96 (17%), Positives = 25/96 (26%), Gaps = 12/96 (12%)

Query: 2   PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINY-WVRDQGDMVISSERYEVESISRSIFD 60
            V              DV L C  +A P +  Y W    G +                  
Sbjct: 233 EVTIEGFDGNWYLQRMDVKLTCKADANPPATEYHWTTLNGSL-----------PKGVEAQ 281

Query: 61  FKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRLY 96
            +       I     G+Y C A N +G     + + 
Sbjct: 282 NRTLFFKGPINYSLAGTYICEATNPIGTRSGQVEVN 317

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331

 Score = 41.3 bits (96), Expect = 9e-06
 Identities = 11/79 (13%), Positives = 18/79 (22%), Gaps = 5/79 (6%)

Query: 18  DVTLECYV-EAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLG 76
            +   C      P S+  W           E                R  +    +    
Sbjct: 152 VLVATCTSANGKPPSVVSWETRLKGEAEYQEIRN----PNGTVTVISRYRLVPSREAHQQ 207

Query: 77  SYKCIAKNSLGEVESSIRL 95
           S  CI    +   + S+ L
Sbjct: 208 SLACIVNYHMDRFKESLTL 226

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331

 Score = 38.2 bits (88), Expect = 1e-04
 Identities = 19/111 (17%), Positives = 32/111 (28%), Gaps = 17/111 (15%)

Query: 2   PVIHVPNQLVGAPIDTDVTLECYVEAYPKSIN----YWVRDQGDMVISSERYEVESISRS 57
             +   N  +   I TDV L C       S+      W +       +   Y        
Sbjct: 15  SQVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVSV 74

Query: 58  IFDFKMR------------LTIKKITKYDLGSYKCIAKN-SLGEVESSIRL 95
           +  ++ R            + + ++   D G Y C       G  ES + L
Sbjct: 75  LAPYRERVEFLRPSFTDGTIRLSRLELEDEGVYICEFATFPTGNRESQLNL 125

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score = 60.8 bits (147), Expect = 1e-12
 Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 9/79 (11%)

Query: 18  DVTLECYVEAYPKSIN-YWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLG 76
           +V L+C V    K  +  W +D    +   E+++ +       D    L I + +K D G
Sbjct: 238 NVLLKCKVANIKKETHIVWYKD-EREISVDEKHDFK-------DGICTLLITEFSKKDAG 289

Query: 77  SYKCIAKNSLGEVESSIRL 95
            Y+ I K+  G+ +S ++L
Sbjct: 290 IYEVILKDDRGKDKSRLKL 308

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score = 53.5 bits (128), Expect = 5e-10
 Identities = 25/92 (27%), Positives = 33/92 (35%), Gaps = 7/92 (7%)

Query: 2  PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDF 61
          P        V       +  EC     PKS   W +D       S R EVES        
Sbjct: 4  PFTKEVVVNVDDDGVISLNFECDK-MTPKSEFSWSKD-YVSTEDSPRLEVESK-----GN 56

Query: 62 KMRLTIKKITKYDLGSYKCIAKNSLGEVESSI 93
          K ++T K +   DLG Y C   ++ G   S +
Sbjct: 57 KTKMTFKDLGMDDLGIYSCDVTDTDGIASSYL 88

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score = 49.2 bits (117), Expect = 1e-08
 Identities = 7/80 (8%), Positives = 26/80 (32%), Gaps = 4/80 (5%)

Query: 17  TDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLG 76
                    +    +   ++ +    +    +Y++           + + ++K+   D G
Sbjct: 124 QVRFWMQAEKLSGNAKVNYIFN-EKEIFEGPKYKMHIDRN---TGIIEMFMEKLQDEDEG 179

Query: 77  SYKCIAKNSLGEVESSIRLY 96
           +Y    ++      S++ L 
Sbjct: 180 TYTFQLQDGKATNHSTVVLV 199

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score = 60.7 bits (147), Expect = 2e-12
 Identities = 15/95 (15%), Positives = 30/95 (31%), Gaps = 4/95 (4%)

Query: 1   HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFD 60
                +  + +   +   ++L C  + +P     W +            +   ++  +  
Sbjct: 212 PRTPALVQKPLELMVAHTISLLCPAQGFPAPSFRWYKFIEGTTRK----QAVVLNDRVKQ 267

Query: 61  FKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
               L IK     D G Y C+  NS+G       L
Sbjct: 268 VSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVL 302

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score = 56.9 bits (137), Expect = 3e-11
 Identities = 18/94 (19%), Positives = 27/94 (28%), Gaps = 16/94 (17%)

Query: 2   PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDF 61
               +                C     P     W++D G  +  SE              
Sbjct: 308 LSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKD-GKAIGHSES------------- 353

Query: 62  KMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
              L I+ + K D G Y+C  +N     E+S  L
Sbjct: 354 --VLRIESVKKEDKGMYQCFVRNDRESAEASAEL 385

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score = 52.2 bits (125), Expect = 1e-09
 Identities = 19/91 (20%), Positives = 27/91 (29%), Gaps = 2/91 (2%)

Query: 2  PVIHV-PNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFD 60
          PV    P   +     T   +EC     P     W+R  G  V         S    +  
Sbjct: 4  PVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLV- 62

Query: 61 FKMRLTIKKITKYDLGSYKCIAKNSLGEVES 91
          F          +     Y C+A+N  G + S
Sbjct: 63 FPPFRAEDYRQEVHAQVYACLARNQFGSIIS 93

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score = 38.4 bits (89), Expect = 9e-05
 Identities = 12/90 (13%), Positives = 28/90 (31%), Gaps = 8/90 (8%)

Query: 2   PVIHVPNQLVGAPIDTDVTLECYVEAY---PKSINYWVRDQGDMVISSERYEVESISRSI 58
                              ++C + ++      +  W  D+ +       Y+     + +
Sbjct: 104 QYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYD----GKYL 159

Query: 59  FDFKMRLTIKKITKYD-LGSYKCIAKNSLG 87
                 L I+++   D   SY+C  K+ L 
Sbjct: 160 VLPSGELHIREVGPEDGYKSYQCRTKHRLT 189

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens} Length = 103

 Score = 56.9 bits (138), Expect = 2e-12
 Identities = 17/95 (17%), Positives = 31/95 (32%), Gaps = 8/95 (8%)

Query: 2  PVIHVPNQLVGAPIDTDVTLECYVEAYPK-SINYWVRDQGDMVISSERYEVESISRSIFD 60
          P I +  +    P   +      V++ P   +  W  + G  +  S +    +       
Sbjct: 9  PRITLRMRSHRVPCGQNTRFILNVQSKPTAEVK-WYHN-GVELQESSKIHYTNT-----S 61

Query: 61 FKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
            + L I      D G+Y+ +  N  GE      L
Sbjct: 62 GVLTLEILDCHTDDSGTYRAVCTNYKGEASDYATL 96

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231

 Score = 59.5 bits (144), Expect = 2e-12
 Identities = 16/90 (17%), Positives = 31/90 (34%), Gaps = 5/90 (5%)

Query: 6   VPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRL 65
           +  +L   P    V   C     P     W+++ G       R         + +    L
Sbjct: 24  MEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKN-GKEFKQEHRIGG----YKVRNQHWSL 78

Query: 66  TIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
            ++ +   D G+Y C+ +N  G +  +  L
Sbjct: 79  IMESVVPSDKGNYTCVVENEYGSINHTYHL 108

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231

 Score = 58.8 bits (142), Expect = 3e-12
 Identities = 17/99 (17%), Positives = 29/99 (29%), Gaps = 5/99 (5%)

Query: 2   PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRD-----QGDMVISSERYEVESISR 56
            +           +  DV   C V +  +    W++                 +V   S 
Sbjct: 119 ILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSG 178

Query: 57  SIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
                   L +  +T+ D G Y C   N +G+   S  L
Sbjct: 179 INSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWL 217

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score = 60.3 bits (146), Expect = 2e-12
 Identities = 22/97 (22%), Positives = 40/97 (41%), Gaps = 12/97 (12%)

Query: 2   PVIHVPN---QLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSI 58
           P    P             D+ LEC     P     W +  GD  + S++ + E+ +++ 
Sbjct: 220 PSFMYPQGTASSQMVLRGMDLLLECIASGVPTPDIAWYKKGGD--LPSDKAKFENFNKA- 276

Query: 59  FDFKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
                 L I  +++ D G Y C+A N +G +  +I +
Sbjct: 277 ------LRITNVSEEDSGEYFCLASNKMGSIRHTISV 307

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score = 56.8 bits (137), Expect = 4e-11
 Identities = 13/95 (13%), Positives = 29/95 (30%), Gaps = 7/95 (7%)

Query: 2   PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDF 61
           P      + +      D  L C     PK    W+ + G+ + S+       ++      
Sbjct: 313 PYWLDEPKNLILAPGEDGRLVCRANGNPKPTVQWMVN-GEPLQSAPPNPNREVAGD---- 367

Query: 62  KMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRLY 96
              +  +         Y+C   N  G + ++  + 
Sbjct: 368 --TIIFRDTQISSRAVYQCNTSNEHGYLLANAFVS 400

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score = 49.1 bits (117), Expect = 1e-08
 Identities = 20/97 (20%), Positives = 36/97 (37%), Gaps = 6/97 (6%)

Query: 2   PVIHV-PNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSE-RYEVESISRSIF 59
           P I     +        ++ +EC  +  P    +W R+     I+ + R  +   S ++ 
Sbjct: 17  PTITKQSAKDHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNIAKDPRVSMRRRSGTLV 76

Query: 60  DFKMRLTIKKITKYDLGSYKCIAKNSLGEVES-SIRL 95
              +        +   G Y+C A+N  G   S  IRL
Sbjct: 77  ---IDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRL 110

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score = 42.2 bits (99), Expect = 4e-06
 Identities = 11/77 (14%), Positives = 22/77 (28%), Gaps = 10/77 (12%)

Query: 18  DVTLECYV-EAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDL- 75
            +TL+C      P  + +W+    + +   +R                L    +   D+ 
Sbjct: 133 PLTLQCNPPPGLPSPVIFWMSSSMEPITQDKRVSQGH--------NGDLYFSNVMLQDMQ 184

Query: 76  GSYKCIAKNSLGEVESS 92
             Y C A+         
Sbjct: 185 TDYSCNARFHFTHTIQQ 201

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190

 Score = 58.7 bits (142), Expect = 2e-12
 Identities = 20/95 (21%), Positives = 28/95 (29%), Gaps = 2/95 (2%)

Query: 2   PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDF 61
           P I    +        D  + C    YP     W +   + V                + 
Sbjct: 93  PDITGHKRSENKNEGQDAMMYCKSVGYPHPEWMWRKK-ENGVFEEISNSSGRFFIINKEN 151

Query: 62  KMRLTIKKI-TKYDLGSYKCIAKNSLGEVESSIRL 95
              L I  +    D G Y+C A NS+G    S  L
Sbjct: 152 YTELNIVNLQITEDPGEYECNATNSIGSASVSTVL 186

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190

 Score = 55.6 bits (134), Expect = 3e-11
 Identities = 15/96 (15%), Positives = 39/96 (40%), Gaps = 14/96 (14%)

Query: 2  PVIHVPNQLVGAPIDTDVTLECYVEAYPKSI--NYWVRDQGDMVISSERYEVESISRSIF 59
          P I    +++       VTL+C + +   ++  +YW ++   + +++ R    ++     
Sbjct: 4  PRIVTSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKN--GVELTATRKNASNME---- 57

Query: 60 DFKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
                 I K    D G Y C+  + +   +++  +
Sbjct: 58 -----YRINKPRAEDSGEYHCVY-HFVSAPKANATI 87

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212

 Score = 59.1 bits (143), Expect = 2e-12
 Identities = 16/94 (17%), Positives = 32/94 (34%), Gaps = 5/94 (5%)

Query: 2   PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDF 61
            V+     +V       + L C V   P     W+++    +  ++   ++  +      
Sbjct: 118 RVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKN-EKALAQTDHCNLKFEAGRTA-- 174

Query: 62  KMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
               TI  ++  D G Y  + KN  G   S   +
Sbjct: 175 --YFTINGVSTADSGKYGLVVKNKYGSETSDFTV 206

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212

 Score = 51.0 bits (122), Expect = 2e-09
 Identities = 15/79 (18%), Positives = 28/79 (35%), Gaps = 7/79 (8%)

Query: 18 DVTLECYVEAYPKSIN-YWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLG 76
           + L  +V  Y + +   W  + G  +  S+R +       I      L I + T  D G
Sbjct: 19 GIQLYSFVTYYVEDLKVNWSHN-GSAIRYSDRVKTGVTGEQI-----WLQINEPTPNDKG 72

Query: 77 SYKCIAKNSLGEVESSIRL 95
           Y     +     + ++ L
Sbjct: 73 KYVMELFDGKTGHQKTVDL 91

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 60.5 bits (146), Expect = 2e-12
 Identities = 11/95 (11%), Positives = 31/95 (32%), Gaps = 8/95 (8%)

Query: 2   PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDF 61
             ++    +    +   +TL+  V+A       WV      +     +++++        
Sbjct: 50  GTVYEAAAVE-VDVSASITLQVLVDAPGNISCLWVFK-HSSLNCQPHFDLQN------RG 101

Query: 62  KMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRLY 96
            + + I K+T+   G Y    ++          + 
Sbjct: 102 VVSMVILKMTETQAGEYLLFIQSEATNYTILFTVS 136

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 57.4 bits (138), Expect = 2e-11
 Identities = 12/97 (12%), Positives = 25/97 (25%), Gaps = 12/97 (12%)

Query: 2   PVIHVP--NQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIF 59
             I+    ++        +       +AYP+    W   +                +   
Sbjct: 325 GFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSF----------PCEQKGL 374

Query: 60  DFKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRLY 96
           D    ++     K+  G Y   A+N   +      L 
Sbjct: 375 DNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLN 411

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 50.1 bits (119), Expect = 8e-09
 Identities = 19/98 (19%), Positives = 31/98 (31%), Gaps = 7/98 (7%)

Query: 3   VIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSER----YEVESISRSI 58
            I    Q++     +     C+ + YP     W +        +E           +R +
Sbjct: 411 NIRRKPQVLAEA--SASQASCFSDGYPLPSWTWKKCSDKSPNCTEEITEGVWNRKANRKV 468

Query: 59  F-DFKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
           F  +    T+           KC A NSLG    +I L
Sbjct: 469 FGQWVSSSTLNMSEAIKGFLVKCCAYNSLGTSCETILL 506

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 47.0 bits (111), Expect = 1e-07
 Identities = 8/88 (9%), Positives = 23/88 (26%), Gaps = 3/88 (3%)

Query: 2   PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINY-WVRDQGDMVISSERYEVESISRSIFD 60
           P   +P   +   +   + + C            W  +   +   +        +     
Sbjct: 230 PQTTLPQLFL--KVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMI 287

Query: 61  FKMRLTIKKITKYDLGSYKCIAKNSLGE 88
             +   +  + + D G Y C +     +
Sbjct: 288 RILFAFVSSVARNDTGYYTCSSSKHPSQ 315

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 42.8 bits (100), Expect = 3e-06
 Identities = 15/92 (16%), Positives = 28/92 (30%), Gaps = 11/92 (11%)

Query: 2   PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDF 61
            +  +         + D  L C  E+ P+ I  WV          E              
Sbjct: 141 LLYTLRRPYFRKMENQD-ALVCISESVPEPIVEWVLCDSQGESCKEES----------PA 189

Query: 62  KMRLTIKKITKYDLGSYKCIAKNSLGEVESSI 93
            ++   K + +      +C A+N LG   + +
Sbjct: 190 VVKKEEKVLHELFGTDIRCCARNELGRECTRL 221

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score = 60.3 bits (146), Expect = 2e-12
 Identities = 20/95 (21%), Positives = 37/95 (38%), Gaps = 5/95 (5%)

Query: 2   PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDF 61
           PV    ++ + A       + C   + P     + ++  D+  + E    + I+R     
Sbjct: 213 PVPQYVSKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPE----DRITRHNRTS 268

Query: 62  KMRLTIKKITKYDLGSYKCIAKNSLGEVES-SIRL 95
             RL  K     D G Y C   N +G+ +  S++L
Sbjct: 269 GKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKL 303

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score = 59.2 bits (143), Expect = 4e-12
 Identities = 21/94 (22%), Positives = 32/94 (34%), Gaps = 13/94 (13%)

Query: 4   IHVPNQLVGAPIDTDVTLECYVEAYPK-SINYWVRDQGDMVISSERYEVESISRSIFDFK 62
              P +++      DVT+ C V   P  ++  W  +     +S  R  V           
Sbjct: 312 EQKPEKVIVVKQGQDVTIPCKVTGLPAPNV-VWSHN--AKPLSGGRATVTDSG------- 361

Query: 63  MRLTIKKITKYDLGSYKCIAKNSLGEVESSIRLY 96
             L IK +   D G Y C A N  G+      + 
Sbjct: 362 --LVIKGVKNGDKGYYGCRATNEHGDKYFETLVQ 393

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score = 56.8 bits (137), Expect = 3e-11
 Identities = 19/91 (20%), Positives = 29/91 (31%), Gaps = 8/91 (8%)

Query: 2  PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINY-WVRDQGDMVISSERYEVESISRSIFD 60
          PV+      V    +    LEC +E   + + Y W +D            +     S   
Sbjct: 7  PVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGS--- 63

Query: 61 FKMRLTIKKITKYDLGSYKCIAKNSLGEVES 91
              L   +    D G Y+C A+   G   S
Sbjct: 64 ----LVFLRPQASDEGHYQCFAETPAGVASS 90

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score = 43.4 bits (102), Expect = 2e-06
 Identities = 18/95 (18%), Positives = 31/95 (32%), Gaps = 6/95 (6%)

Query: 2   PVIHVPNQLVGAPIDTDVTLECYV-EAYPKSINYWVRDQGDMVISSERYEVESISRSIFD 60
                              L+C +  AYPK +  W +       +++  + +   R    
Sbjct: 101 IASPAKTHEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDR--RITAG 158

Query: 61  FKMRLTIKKITK---YDLGSYKCIAKNSLGEVESS 92
               L    +TK    D+  Y C AKN+  + E  
Sbjct: 159 PDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVV 193

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217

 Score = 58.7 bits (142), Expect = 3e-12
 Identities = 24/92 (26%), Positives = 36/92 (39%), Gaps = 2/92 (2%)

Query: 2   PVIHVPNQLVGAPIDTDVTLECY-VEAYPKSINYWVRDQGDMVISSERYEVESISRSIFD 60
               V  +           LEC   +  P+    W++D G  +   +     + SR    
Sbjct: 109 DDFRVEPKDTRVAKGETALLECGPPKGIPEPTLIWIKD-GVPLDDLKAMSFGASSRVRIV 167

Query: 61  FKMRLTIKKITKYDLGSYKCIAKNSLGEVESS 92
               L I  +   D G+YKCIA+N +G  ESS
Sbjct: 168 DGGNLLISNVEPIDEGNYKCIAQNLVGTRESS 199

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217

 Score = 48.3 bits (115), Expect = 2e-08
 Identities = 24/94 (25%), Positives = 40/94 (42%), Gaps = 10/94 (10%)

Query: 2  PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSE----RYEVESISRS 57
          P I      +    +   TL C VE  P+    W +D G+ V ++E    R + +  +  
Sbjct: 10 PRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKD-GEPVSTNEKKSHRVQFKDGALF 68

Query: 58 IFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVES 91
                  T++   + D G Y C+AKN +G+  S
Sbjct: 69 F-----YRTMQGKKEQDGGEYWCVAKNRVGQAVS 97

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score = 59.3 bits (143), Expect = 4e-12
 Identities = 11/95 (11%), Positives = 30/95 (31%), Gaps = 8/95 (8%)

Query: 2   PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDF 61
             ++    +    +   +TL+  V+A       WV      +     +++++        
Sbjct: 50  GTVYEAAAVE-VDVSASITLQVLVDAPGNISCLWVFK-HSSLNCQPHFDLQNRGVVS--- 104

Query: 62  KMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRLY 96
              + I K+T+   G Y    ++          + 
Sbjct: 105 ---MVILKMTETQAGEYLLFIQSEATNYTILFTVS 136

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score = 58.9 bits (142), Expect = 6e-12
 Identities = 15/97 (15%), Positives = 26/97 (26%), Gaps = 12/97 (12%)

Query: 2   PVIHVPNQLVGAPID--TDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIF 59
             I+  N      ID   +       +AYP+    W   +                +   
Sbjct: 325 GFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSF----------PCEQKGL 374

Query: 60  DFKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRLY 96
           D    ++     K+  G Y   A+N   +      L 
Sbjct: 375 DNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLN 411

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score = 43.9 bits (103), Expect = 1e-06
 Identities = 10/90 (11%), Positives = 28/90 (31%), Gaps = 5/90 (5%)

Query: 2   PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINY-WVRDQGDMVISSERYEVESISRSIFD 60
           P   +P   +   +   + + C            W  +    +     +E+ + S +   
Sbjct: 230 PQTTLPQLFL--KVGEPLWIRCKAVHVNHGFGLTWELE-NKALEEGNYFEMSTYSTNRTM 286

Query: 61  FKM-RLTIKKITKYDLGSYKCIAKNSLGEV 89
            ++    +  + + D G Y C +     + 
Sbjct: 287 IRILFAFVSSVARNDTGYYTCSSSKHPSQS 316

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score = 43.9 bits (103), Expect = 1e-06
 Identities = 14/94 (14%), Positives = 25/94 (26%), Gaps = 11/94 (11%)

Query: 2   PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDF 61
            +  +         + D  L C  E+ P+ I  WV          E              
Sbjct: 141 LLYTLRRPYFRKMENQD-ALVCISESVPEPIVEWVLCDSQGESCKEESPAVVKKEEKV-- 197

Query: 62  KMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
                   + +      +C A+N LG   + +  
Sbjct: 198 --------LHELFGTDIRCCARNELGRECTRLFT 223

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4 Length = 98

 Score = 56.0 bits (135), Expect = 5e-12
 Identities = 18/95 (18%), Positives = 27/95 (28%), Gaps = 12/95 (12%)

Query: 2  PVIHVPNQLVGAPIDTDVTLECYVEA-YPKSINYWVRDQGDMVISSERYEVESISRSIFD 60
           V     +        DVT  C  ++  P     W R     + S               
Sbjct: 11 MVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMDFNGI------- 63

Query: 61 FKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
              LTI+ +   D G+Y C   N     + +  L
Sbjct: 64 ----LTIRNVQPSDAGTYVCTGSNMFAMDQGTATL 94

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241

 Score = 58.4 bits (141), Expect = 5e-12
 Identities = 16/90 (17%), Positives = 32/90 (35%), Gaps = 5/90 (5%)

Query: 6   VPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRL 65
           +  +L+  P    V   C     P     W+++ G       R         +   +  L
Sbjct: 20  MDKKLLAVPAANTVRFRCPAAGNPTPSISWLKN-GREFRGEHRIG----GIKLRHQQWSL 74

Query: 66  TIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
            ++ +   D G+Y C+ +N  G +  +  L
Sbjct: 75  VMESVVPSDRGNYTCVVENKFGSIRQTYTL 104

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241

 Score = 58.4 bits (141), Expect = 5e-12
 Identities = 20/100 (20%), Positives = 36/100 (36%), Gaps = 6/100 (6%)

Query: 2   PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQ---GDMVISSERYEVESI---S 55
            +         A + +DV   C V +  +    W++     G  V       V  +    
Sbjct: 115 ILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWI 174

Query: 56  RSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
               +  +RL +  +++ D G Y C A N +G  E +  L
Sbjct: 175 SESVEADVRLRLANVSERDGGEYLCRATNFIGVAEKAFWL 214

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191

 Score = 57.5 bits (139), Expect = 6e-12
 Identities = 16/96 (16%), Positives = 30/96 (31%), Gaps = 9/96 (9%)

Query: 2   PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVIS-SERYEVESISRSIFD 60
            +              D  + C V +       W     D+++    R+ V S +     
Sbjct: 101 LMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLS-NNY--- 156

Query: 61  FKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRLY 96
               L I+ I K D G+Y+C  +       +   + 
Sbjct: 157 ----LQIRGIKKTDEGTYRCEGRILARGEINFKDIQ 188

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191

 Score = 56.4 bits (136), Expect = 2e-11
 Identities = 17/93 (18%), Positives = 27/93 (29%), Gaps = 6/93 (6%)

Query: 2  PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINY-WVRDQGDMVISS-ERYEVESISRSIF 59
            + +        +       C V    K  +  W    G+ +  + +R  V        
Sbjct: 3  LQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWND---- 58

Query: 60 DFKMRLTIKKITKYDLGSYKCIAKNSLGEVESS 92
          D    LTI      D G YKC+     G    +
Sbjct: 59 DDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEA 91

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score = 58.7 bits (142), Expect = 7e-12
 Identities = 15/94 (15%), Positives = 32/94 (34%), Gaps = 12/94 (12%)

Query: 2   PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDF 61
           P   +           +V + C     P     W++   + +   +   V          
Sbjct: 206 PRFSILPMSHEIMPGGNVNITCVAVGSPMPYVKWMQG-AEDLTPEDDMPVG--------- 255

Query: 62  KMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
             R  ++     D  +Y C+A +SLG +E+  ++
Sbjct: 256 --RNVLELTDVKDSANYTCVAMSSLGVIEAVAQI 287

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score = 55.6 bits (134), Expect = 8e-11
 Identities = 24/93 (25%), Positives = 33/93 (35%), Gaps = 10/93 (10%)

Query: 2   PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQG--DMVISSERYEVESISRSIF 59
           P I +  QL         T+ C     P     W +D    D   S+ R +         
Sbjct: 109 PNIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGA--- 165

Query: 60  DFKMRLTIKKITKYDLGSYKCIAKNSLGEVESS 92
                L I+   + D G Y+C+A NS G   SS
Sbjct: 166 -----LQIESSEETDQGKYECVATNSAGVRYSS 193

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score = 54.8 bits (132), Expect = 1e-10
 Identities = 21/96 (21%), Positives = 34/96 (35%), Gaps = 6/96 (6%)

Query: 2  PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDF 61
          P      +          +  C     PK    W +  G  V S     +E    +    
Sbjct: 7  PRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKK-GKKVNSQRFETIEFDESAGA-- 63

Query: 62 KMRLTIKKI-TKYDLGSYKCIAKNSLGEVESSIRLY 96
             L I+ + T  D   Y+C+A+NS+GE+    +L 
Sbjct: 64 --VLRIQPLRTPRDENVYECVAQNSVGEITVHAKLT 97

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305

 Score = 58.2 bits (141), Expect = 7e-12
 Identities = 21/95 (22%), Positives = 36/95 (37%), Gaps = 4/95 (4%)

Query: 2  PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDF 61
          P      + +     ++ TL C V  +PK I  W R   +++    +Y ++         
Sbjct: 5  PHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYH-- 62

Query: 62 KMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRLY 96
            +L I  +T  D   Y+  A N  G V  +  L 
Sbjct: 63 --QLIIASVTDDDATVYQVRATNQGGSVSGTASLE 95

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305

 Score = 56.3 bits (136), Expect = 4e-11
 Identities = 21/100 (21%), Positives = 38/100 (38%), Gaps = 10/100 (10%)

Query: 1   HPVIHVPNQLVG-----APIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESIS 55
              IH+P  L G     A     V+++      P  +  W +   D++ ++  Y+V    
Sbjct: 99  PAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKG-QDLIDNNGHYQVIVTR 157

Query: 56  RSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
                F   +    + + D G Y   AKN  G  + ++ L
Sbjct: 158 ----SFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVEL 193

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 58.2 bits (140), Expect = 9e-12
 Identities = 17/97 (17%), Positives = 35/97 (36%), Gaps = 3/97 (3%)

Query: 1   HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFD 60
           +       QL  A       +   V+  P     W+ + G ++  +     E +  +  +
Sbjct: 246 NVSFPASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFN-GSVLNETSFIFTEFLEPAANE 304

Query: 61  FKMR--LTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
                 L + + T  + G+Y  +A N  G+  +SI  
Sbjct: 305 TVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMA 341

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 58.2 bits (140), Expect = 1e-11
 Identities = 18/97 (18%), Positives = 34/97 (35%), Gaps = 9/97 (9%)

Query: 1   HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFD 60
            P + V        +  DV L C VE        W+  + +   +  +            
Sbjct: 158 VPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLG---- 213

Query: 61  FKMRLTIKKIT-KYDLGSYKCIAKNSLGEVESSIRLY 96
               LT+  +T   +  +  C A+N +G  E S+++ 
Sbjct: 214 ----LTLANVTSDLNRKNVTCWAENDVGRAEVSVQVN 246

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 126

 Score = 55.8 bits (134), Expect = 1e-11
 Identities = 15/89 (16%), Positives = 27/89 (30%), Gaps = 6/89 (6%)

Query: 13  APIDTDVTLECYVEAYPKSIN---YWVRDQGDMVISSERYEV---ESISRSIFDFKMRLT 66
             +  D+T    V+A          W + +   + S     +   E+  R    +   + 
Sbjct: 19  VKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQ 78

Query: 67  IKKITKYDLGSYKCIAKNSLGEVESSIRL 95
           I K      G+Y+C           S  L
Sbjct: 79  IIKAKDNFAGNYRCEVTYKDKFDSCSFDL 107

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250

 Score = 57.6 bits (138), Expect = 1e-11
 Identities = 15/109 (13%), Positives = 28/109 (25%), Gaps = 15/109 (13%)

Query: 2   PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIF-- 59
            V     ++V      D+T+ C       +   W                   +++ F  
Sbjct: 137 NVHVSTAEVVQVDEGNDITMTCPCTDCANANVTWYTGPTFFENYETGTYQPLANKNQFGI 196

Query: 60  -----DFKMR--------LTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
                +   R        L I+     D G   C      GE+++    
Sbjct: 197 TWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGELDADRSS 245

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A Length = 137

 Score = 55.4 bits (133), Expect = 2e-11
 Identities = 13/91 (14%), Positives = 25/91 (27%), Gaps = 9/91 (9%)

Query: 13  APIDTDVTLECYVEAYPK-SINYWVRDQGDMVISSERYEVESISRSIFDFKMR------- 64
             +   V L C     P   I  W  +         +    +    +             
Sbjct: 33  RWVGGSVELHCEAVGSPVPEI-QWWFEGQGPNDICSQLWDGARLDRVHIHATYHQHAAST 91

Query: 65  LTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
           ++I  + + D G+Y+C A N       +   
Sbjct: 92  ISIDTLVEEDTGTYECRASNDPDRNHLTRAP 122

>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302

 Score = 57.0 bits (137), Expect = 2e-11
 Identities = 15/96 (15%), Positives = 28/96 (29%), Gaps = 13/96 (13%)

Query: 2   PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINY-WVRDQGDMVISSERYEVESISRSIFD 60
            V              + TL C   + P+   Y W    G +         +        
Sbjct: 218 EVSISGYDNNWYLGQNEATLTCDARSNPEPTGYNWSTTMGPL---PPFAVAQGAQ----- 269

Query: 61  FKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRLY 96
               L I+ + K    +  C   N+LG  ++ + + 
Sbjct: 270 ----LLIRPVDKPINTTLICNVTNALGARQAELTVQ 301

>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302

 Score = 44.3 bits (104), Expect = 9e-07
 Identities = 24/112 (21%), Positives = 36/112 (32%), Gaps = 19/112 (16%)

Query: 2   PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINY-----WVRD------------QGDMVI 44
            V+  P Q V   +   VTL CY++     + +     W R             QG    
Sbjct: 2   VVVQAPTQ-VPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYS 60

Query: 45  SSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNS-LGEVESSIRL 95
            S+R E  +           L +  +   D G+Y C+      G     I L
Sbjct: 61  ESKRLEFVAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWL 112

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212

 Score = 56.4 bits (136), Expect = 2e-11
 Identities = 20/92 (21%), Positives = 29/92 (31%), Gaps = 10/92 (10%)

Query: 2   PVIHVPNQLVGAPIDTDVTLECYV-EAYPKSINYWVRDQGDMVISSERYEVESISRSIFD 60
                    V   +     +EC     +P+    W +D   +    ER  +         
Sbjct: 112 DDFRQNPSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERITIRGGK----- 166

Query: 61  FKMRLTIKKITKYDLGSYKCIAKNSLGEVESS 92
               L I    K D G Y C+  N +GE ES 
Sbjct: 167 ----LMITYTRKSDAGKYVCVGTNMVGERESE 194

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212

 Score = 48.3 bits (115), Expect = 2e-08
 Identities = 27/100 (27%), Positives = 42/100 (42%), Gaps = 15/100 (15%)

Query: 3   VIHVPNQLVGAPIDTDV------TLECYVEAYPK-SINYWVRDQGDMVISSERYEVESIS 55
               P ++V  P D  V      TL C  E  P  +I  W +  G+ V + +        
Sbjct: 5   QEDFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTI-EWYKG-GERVETDKDDPRSH-- 60

Query: 56  RSIFD----FKMRLTIKKITKYDLGSYKCIAKNSLGEVES 91
           R +      F +R+   + ++ D G Y C+A+N LGE  S
Sbjct: 61  RMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVS 100

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score = 57.3 bits (138), Expect = 2e-11
 Identities = 16/92 (17%), Positives = 32/92 (34%), Gaps = 5/92 (5%)

Query: 4   IHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKM 63
             +  +L+  P    V   C     P     W+++ G       R         +   + 
Sbjct: 126 ERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKN-GREFRGEHRIG----GIKLRHQQW 180

Query: 64  RLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
            L ++ +   D G+Y C+ +N  G +  +  L
Sbjct: 181 SLVMESVVPSDRGNYTCVVENKFGSIRQTYTL 212

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score = 54.6 bits (131), Expect = 2e-10
 Identities = 21/101 (20%), Positives = 37/101 (36%), Gaps = 7/101 (6%)

Query: 2   PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQ---GDMVISSERYEVESISRSI 58
            +         A + +DV   C V +  +    W++     G  V       V  +  + 
Sbjct: 223 ILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAG 282

Query: 59  FDFKMR----LTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
            +   +    L++  +T  D G Y C+A NS+G    S  L
Sbjct: 283 ANTTDKELEVLSLHNVTFEDAGEYTCLAGNSIGFSHHSAWL 323

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score = 48.5 bits (115), Expect = 3e-08
 Identities = 18/92 (19%), Positives = 29/92 (31%), Gaps = 11/92 (11%)

Query: 2  PVIHVPNQLVGAPIDTDVTLECYVEA-YPKSINYWVRDQGDMVISSERYEVESISRSIFD 60
                 + +       V L C      P     WV+D G  ++ SER  V         
Sbjct: 9  GPEPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKD-GTGLVPSERVLVGP------- 60

Query: 61 FKMRLTIKKITKYDLGSYKCIAKNSLGEVESS 92
             RL +   +  D G+Y C  + +   +   
Sbjct: 61 --QRLQVLNASHEDSGAYSCRQRLTQRVLCHF 90

>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B Length = 202

 Score = 56.2 bits (135), Expect = 2e-11
 Identities = 16/97 (16%), Positives = 34/97 (35%), Gaps = 7/97 (7%)

Query: 4  IHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQ-----GDMVISSERYEVESISRSI 58
          +  P ++    + + V+LEC  +    +    +R        D  + SER  +  +   +
Sbjct: 5  VTAPKEVYTVDVGSSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATL--LEEQL 62

Query: 59 FDFKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
             K    I  +   D G Y+C+           + +
Sbjct: 63 PLGKALFHIPSVQVRDSGQYRCLVICGAAWDYKYLTV 99

>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B Length = 202

 Score = 41.6 bits (97), Expect = 5e-06
 Identities = 14/92 (15%), Positives = 31/92 (33%), Gaps = 8/92 (8%)

Query: 4   IHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKM 63
           + +  +++  P   +V L C    YP +   W         S  R         ++    
Sbjct: 106 MRIDTRILEVPGTGEVQLTCQARGYPLAEVSWQNVSVPANTSHIR-----TPEGLYQVTS 160

Query: 64  RLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
            L +K        ++ C+  N+  +  +S  +
Sbjct: 161 VLRLKPQ---PSRNFSCMFWNAHMKELTSAII 189

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X Length = 126

 Score = 54.9 bits (132), Expect = 2e-11
 Identities = 15/85 (17%), Positives = 32/85 (37%), Gaps = 7/85 (8%)

Query: 16 DTDVTLECYVEAYPK-SINYWVRDQGDMVISSERYEVESISRSIFDFKMR---LTIKKIT 71
               +   V+  P  S+  W+ +    V++   +          +  +R   L + + T
Sbjct: 15 MHHWCIPFSVDGQPAPSL-RWLFN--GSVLNETSFIFTEFLEPAANETVRHGCLRLNQPT 71

Query: 72 KYDLGSYKCIAKNSLGEVESSIRLY 96
            + G+Y  +A N  G+  +SI   
Sbjct: 72 HVNNGNYTLLAANPFGQASASIMAA 96

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A Length = 108

 Score = 53.9 bits (129), Expect = 3e-11
 Identities = 14/85 (16%), Positives = 24/85 (28%), Gaps = 6/85 (7%)

Query: 17  TDVTLECYVEAYPKSIN---YWVRDQGDMVISSERYEV---ESISRSIFDFKMRLTIKKI 70
             +T    V            W + +   + S     +   +S  R+   +   L I   
Sbjct: 20  GSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDA 79

Query: 71  TKYDLGSYKCIAKNSLGEVESSIRL 95
                GSY+C          S+  L
Sbjct: 80  QPAFTGSYRCEVSTKDKFDCSNFNL 104

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus} Length = 95

 Score = 53.6 bits (129), Expect = 4e-11
 Identities = 17/94 (18%), Positives = 34/94 (36%), Gaps = 11/94 (11%)

Query: 2  PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDF 61
            + V  + +       + L C +    +SIN W+RD G  ++ S R  +          
Sbjct: 10 WGVPVEVESLLVHPGDLLQLRCRLRDDVQSIN-WLRD-GVQLVESNRTRITG-------- 59

Query: 62 KMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
             + ++     D G Y C+  +  G   +   +
Sbjct: 60 -EEVEVRDSIPADSGLYACVTSSPSGSDTTYFSV 92

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96

 Score = 53.6 bits (129), Expect = 4e-11
 Identities = 20/92 (21%), Positives = 33/92 (35%), Gaps = 17/92 (18%)

Query: 2  PVIHVPNQLVGAPIDTDVTLECYVEAYPK-SINYWVRDQGDMVISSERYEVESISRSIFD 60
            + V  +         VTL C V A P   I +W++D   + +                
Sbjct: 11 VQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQI-HWMKDGVPLPLPPSPV----------- 58

Query: 61 FKMRLTIKKITKYDLGSYKCIAKNSLGEVESS 92
              L + +I   D G+Y C+A +S    + S
Sbjct: 59 ----LILPEIGPQDQGTYSCVATHSSHGPQES 86

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 56.3 bits (136), Expect = 5e-11
 Identities = 17/95 (17%), Positives = 29/95 (30%), Gaps = 6/95 (6%)

Query: 2   PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDF 61
            +     Q V       V   C  +  P     W+  +  +V +     +          
Sbjct: 386 RIRDRKAQQVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVFPDGT--- 442

Query: 62  KMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRLY 96
              L ++     D G+Y CIA N+ G       L+
Sbjct: 443 ---LEVRYAQVQDNGTYLCIAANAGGNDSMPAHLH 474

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 56.0 bits (135), Expect = 5e-11
 Identities = 18/83 (21%), Positives = 28/83 (33%), Gaps = 7/83 (8%)

Query: 13  APIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITK 72
           A +   +T+ C  +    +   WV    + V+S       S+          L  KK+  
Sbjct: 258 AHLGDTLTIRCDTKQQGMTKV-WVSPSNEQVLSQGSNGSVSVRNGD------LFFKKVQV 310

Query: 73  YDLGSYKCIAKNSLGEVESSIRL 95
            D G Y C A         S+ L
Sbjct: 311 EDGGVYTCYAMGETFNETLSVEL 333

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 56.0 bits (135), Expect = 6e-11
 Identities = 20/80 (25%), Positives = 27/80 (33%), Gaps = 6/80 (7%)

Query: 16  DTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDL 75
                  C V A    +  W +D    +  S +Y               LTI ++   D 
Sbjct: 497 GQSANFYCRVIASSPPVVTWHKD-DRELKQSVKYMKRY-----NGNDYGLTINRVKGDDK 550

Query: 76  GSYKCIAKNSLGEVESSIRL 95
           G Y   AKNS G  E  + L
Sbjct: 551 GEYTVRAKNSYGTKEEIVFL 570

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182

 Score = 54.8 bits (132), Expect = 6e-11
 Identities = 19/96 (19%), Positives = 32/96 (33%), Gaps = 5/96 (5%)

Query: 2  PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDF 61
            +      +       V L C VE   +    WV+D   +    + Y   S    I   
Sbjct: 3  LKLMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIG-- 60

Query: 62 KMRLTIKKITKYDLGSYKCIAKNSLGEVES-SIRLY 96
             L++K + + D G Y C  ++      S  + L 
Sbjct: 61 --FLSLKSVERSDAGRYWCQVEDGGETEISQPVWLT 94

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182

 Score = 51.0 bits (122), Expect = 2e-09
 Identities = 13/92 (14%), Positives = 21/92 (22%), Gaps = 16/92 (17%)

Query: 2   PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINY-WVRDQGDMVISSERYEVESISRSIFD 60
           P   V  + +  P +    L C     P+ +   W R     +                 
Sbjct: 99  PFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRG-TTKIGGPA------------- 144

Query: 61  FKMRLTIKKITKYDLGSYKCIAKNSLGEVESS 92
                 +          + C A N  G   S 
Sbjct: 145 -PSPSVLNVTGVTQSTMFSCEAHNLKGLASSR 175

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X Length = 122

 Score = 53.2 bits (127), Expect = 9e-11
 Identities = 16/99 (16%), Positives = 34/99 (34%), Gaps = 4/99 (4%)

Query: 1   HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRS--- 57
           + V+  P+  +   +   + L C           +  +        ++     +      
Sbjct: 8   YDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGS 67

Query: 58  -IFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
            +  F   LTI  +T+ D G Y C A + L   ++S  +
Sbjct: 68  EMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFV 106

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329

 Score = 55.2 bits (132), Expect = 1e-10
 Identities = 13/100 (13%), Positives = 33/100 (33%), Gaps = 6/100 (6%)

Query: 1   HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSIN----YWVRDQGDMVISSERYEVESISR 56
           H    + +  +   I     + C   +    ++     W    G  +I  +      ++ 
Sbjct: 228 HRFKLILDPKINVTIGEPANITCTAVSTSLLVDDVLIDWENPSGW-IIGLDFGVYSILTS 286

Query: 57  SIFDFKMRLTIKKITKYDLGS-YKCIAKNSLGEVESSIRL 95
           S    +  L  + +T+  +G+ Y C   N   +   +  +
Sbjct: 287 SGGITEATLYFENVTEEYIGNTYTCRGHNYYFDKTLTTTV 326

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329

 Score = 48.7 bits (115), Expect = 2e-08
 Identities = 15/95 (15%), Positives = 28/95 (29%), Gaps = 10/95 (10%)

Query: 2   PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINY-WVRDQGDMVISSERYEVESISRSIFD 60
           P        +G      + L C +       N  W ++  +++I   +Y           
Sbjct: 129 PSCIPETYELGTHDKYGIDLYCGILYAKHYNNITWYKNNQELIIDGTKYSQSG------- 181

Query: 61  FKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
               L I      D G Y C        +++ I +
Sbjct: 182 --QNLIIHNPELEDSGRYDCYVHYDDVRIKNDIVV 214

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329

 Score = 37.1 bits (85), Expect = 3e-04
 Identities = 10/77 (12%), Positives = 20/77 (25%), Gaps = 3/77 (3%)

Query: 18  DVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGS 77
             + +C         + +      +           ++R + +    L I   T  D   
Sbjct: 46  PFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRPLNRRVKNG--DLWIANYTSNDSHR 103

Query: 78  -YKCIAKNSLGEVESSI 93
            Y C      G+    I
Sbjct: 104 RYLCTVTTKNGDCVQGI 120

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 55.1 bits (133), Expect = 1e-10
 Identities = 23/98 (23%), Positives = 33/98 (33%), Gaps = 12/98 (12%)

Query: 1   HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSE---RYEVESISRS 57
            PVI  P   +         L+C       S+  W+   G ++       R  V S    
Sbjct: 341 APVIVEPPADLNVTEGMAAELKCRASTSLTSV-SWITPNGTVMTHGAYKVRIAVLSDGT- 398

Query: 58  IFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
                  L    +T  D G Y C+  NS+G   +S  L
Sbjct: 399 -------LNFTNVTVQDTGMYTCMVSNSVGNTTASATL 429

>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201

 Score = 53.9 bits (129), Expect = 2e-10
 Identities = 15/93 (16%), Positives = 30/93 (32%), Gaps = 8/93 (8%)

Query: 2   PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDF 61
             + V ++    P  + +T+ C V A+P     W+  +G     +         +     
Sbjct: 105 LTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVMKEKD---- 160

Query: 62  KMRLTIK---KITKYDLGSYKCIAKNSLGEVES 91
              L++     + K       C+ KN   E   
Sbjct: 161 -GSLSVAVDLSLPKPWHLPVTCVGKNDKEEAHG 192

>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201

 Score = 39.6 bits (92), Expect = 3e-05
 Identities = 18/99 (18%), Positives = 29/99 (29%), Gaps = 14/99 (14%)

Query: 11 VGAPIDTDVTLECY---VEAYPKSINYWVR----DQGDMVISSERYEVESISRSIFDFKM 63
          V A +   VTL  Y   V   P+    W +    ++  ++       +         F +
Sbjct: 1  VTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDI 60

Query: 64 R-------LTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
                  L +        G+Y C  K    EV     L
Sbjct: 61 HRSANTFFLVVTAANISHDGNYLCRMKLGETEVTKQEHL 99

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349

 Score = 54.5 bits (130), Expect = 2e-10
 Identities = 26/105 (24%), Positives = 43/105 (40%), Gaps = 11/105 (10%)

Query: 2   PVIHVPNQ--LVGAPIDTDVTLECYV----EAYPKSINYWVRD--QGDMVISSERYEVES 53
           PVIH PN   +       ++ + C V        ++  +W  D  + D +          
Sbjct: 225 PVIHSPNDHVVYEKEPGEELLIPCTVYFSFLMDSRNEVWWTIDGKKPDDITIDVTINESI 284

Query: 54  ISRSIFD--FKMRLTIKKITKYDLG-SYKCIAKNSLGEVESSIRL 95
                 D      L+IKK+T  DL  SY C A+++ GEV  + ++
Sbjct: 285 SHSRTEDETRTQILSIKKVTSEDLKRSYVCHARSAKGEVAKAAKV 329

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349

 Score = 42.9 bits (100), Expect = 2e-06
 Identities = 12/83 (14%), Positives = 24/83 (28%), Gaps = 1/83 (1%)

Query: 13  APIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITK 72
              +  +               W   + D  +          +R I   K  L  +    
Sbjct: 30  PLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENR-ISKEKDVLWFRPTLL 88

Query: 73  YDLGSYKCIAKNSLGEVESSIRL 95
            D G+Y C+ +N+    + +  L
Sbjct: 89  NDTGNYTCMLRNTTYCSKVAFPL 111

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349

 Score = 39.1 bits (90), Expect = 6e-05
 Identities = 8/75 (10%), Positives = 19/75 (25%), Gaps = 10/75 (13%)

Query: 20  TLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYK 79
            ++ Y  +  K    W      +              ++    M L+       + G+Y 
Sbjct: 144 NVDGYFPSSVKPTITWYMGCYKI----------QNFNNVIPEGMNLSFLIALISNNGNYT 193

Query: 80  CIAKNSLGEVESSIR 94
           C+           + 
Sbjct: 194 CVVTYPENGRTFHLT 208

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus} Length = 112

 Score = 51.6 bits (123), Expect = 3e-10
 Identities = 17/95 (17%), Positives = 34/95 (35%), Gaps = 4/95 (4%)

Query: 2   PVIHVPNQLVGAPIDTDVTLECYVEAYPKS-INY-WVRDQGDMVISSERYEV--ESISRS 57
           P I V  +   A   +DV+  C   +   S + + W  D   +  +         +    
Sbjct: 11  PQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGE 70

Query: 58  IFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVESS 92
           + ++   L ++ +     G Y+C+  N  G   S 
Sbjct: 71  LMEYTTILRLRNVEFTSEGXYQCVISNHFGSSYSV 105

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 53.6 bits (129), Expect = 4e-10
 Identities = 19/99 (19%), Positives = 30/99 (30%), Gaps = 15/99 (15%)

Query: 1   HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSE---RYEV-ESISR 56
            P I    + +         L+C     P S   W+   G ++  +    R  V    + 
Sbjct: 352 APFIMDAPRDLNISEGRMAELKCRTP--PMSSVKWLLPNGTVLSHASRHPRISVLNDGT- 408

Query: 57  SIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
                   L    +   D G Y C+  N  G   +S  L
Sbjct: 409 --------LNFSHVLLSDTGVYTCMVTNVAGNSNASAYL 439

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens} Length = 91

 Score = 50.8 bits (122), Expect = 4e-10
 Identities = 11/92 (11%), Positives = 25/92 (27%), Gaps = 17/92 (18%)

Query: 2  PVIHVPNQLVGAPIDTDVTLECYVEAYPK-SINYWVRDQGDMVISSERYEVESISRSIFD 60
            I V          + + L+C     P      W +++  +   +++            
Sbjct: 4  LQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQ-WFKNELPLTHETKKL----------- 51

Query: 61 FKMRLTIKKITKYDLGSYKCIAKNSLGEVESS 92
                +  +     G+Y C   N     +S 
Sbjct: 52 ----YMVPYVDLEHQGTYWCHVYNDRDSQDSK 79

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* Length = 213

 Score = 52.9 bits (126), Expect = 5e-10
 Identities = 18/100 (18%), Positives = 31/100 (31%), Gaps = 4/100 (4%)

Query: 1   HPVIHVPNQLVGAPIDTDVTLECYVEAYPKS--INYWVRDQGDM--VISSERYEVESISR 56
           + V+  P+  +   +   + L C             W              R        
Sbjct: 105 YDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGS 164

Query: 57  SIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRLY 96
            +  F   LTI  +T+ D G Y C A + L   ++S  + 
Sbjct: 165 EMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVR 204

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* Length = 213

 Score = 41.3 bits (96), Expect = 7e-06
 Identities = 11/94 (11%), Positives = 23/94 (24%), Gaps = 7/94 (7%)

Query: 2  PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDF 61
                   +    +  V + C   +             +     +   +       +D 
Sbjct: 10 VSDQHGVVYITENKNKTVVIPCLG-SISNLNVSLCARYPEKRFVPDGNRI------SWDS 62

Query: 62 KMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
          K   TI        G   C AK +    +S + +
Sbjct: 63 KKGFTIPSYMISYAGMVFCEAKINDESYQSIMYI 96

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218

 Score = 52.6 bits (126), Expect = 5e-10
 Identities = 11/91 (12%), Positives = 25/91 (27%), Gaps = 15/91 (16%)

Query: 2   PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDF 61
             I V          + + L+C     P     W +++  +   +++             
Sbjct: 119 LQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETKK------------- 165

Query: 62  KMRLTIKKITKYDLGSYKCIAKNSLGEVESS 92
                +  +     G+Y C   N     +S 
Sbjct: 166 --LYMVPYVDLEHQGTYWCHVYNDRDSQDSK 194

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218

 Score = 51.0 bits (122), Expect = 2e-09
 Identities = 14/91 (15%), Positives = 22/91 (24%), Gaps = 15/91 (16%)

Query: 2  PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDF 61
            I V  +         V L C    +P     W +   ++   +               
Sbjct: 19 SKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNGNTS------------- 65

Query: 62 KMRLTIKKITKYDLGSYKCIAKNSLGEVESS 92
             L    +   D G Y C   N+     S 
Sbjct: 66 --ELIFNAVHVKDAGFYVCRVNNNFTFEFSQ 94

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214

 Score = 52.4 bits (125), Expect = 7e-10
 Identities = 14/95 (14%), Positives = 29/95 (30%), Gaps = 9/95 (9%)

Query: 2   PVIHVPNQLVGAPIDTDVTLECYVEA-YPKSINYWVRDQGDMVISSERYEVESISRSIFD 60
           P            I  D  L+C  +         W +      + +      +       
Sbjct: 122 PSGTRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWLAEMTSPV---- 177

Query: 61  FKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
               +++K  +    G+Y C  +N +G  +  +RL
Sbjct: 178 ----ISVKNASSEYSGTYSCTVQNRVGSDQCMLRL 208

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214

 Score = 52.4 bits (125), Expect = 7e-10
 Identities = 18/114 (15%), Positives = 30/114 (26%), Gaps = 22/114 (19%)

Query: 4   IHVPNQLVGAPIDTDVTLECYVEAYPKSIN----YWVRDQGDMVISSERY---------- 49
           I  P Q +         L C     P+        W+    D  I  +            
Sbjct: 3   ITTPEQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYD 62

Query: 50  --------EVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
                    V   S  +      + +  +   D+G+Y+C  K + G       L
Sbjct: 63  NYYPDLKGRVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLL 116

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score = 52.8 bits (126), Expect = 8e-10
 Identities = 19/105 (18%), Positives = 39/105 (37%), Gaps = 11/105 (10%)

Query: 2   PVIHVPNQLVGAPIDTDVTLECYVEAYPKS----INYWVRDQGDMVISSERYEVESISRS 57
           PVI  P + + A + + +T+ C V     +    + +W  +   +  +     V    R 
Sbjct: 227 PVIISPLKTISASLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQ 286

Query: 58  IFDFK------MRLTIKKITKYDLGS-YKCIAKNSLGEVESSIRL 95
            +         + L    +T+ DL   +KC+  N+L        +
Sbjct: 287 EYSENNENYIEVPLIFDPVTREDLHMDFKCVVHNTLSFQTLRTTV 331

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score = 47.8 bits (113), Expect = 5e-08
 Identities = 16/98 (16%), Positives = 30/98 (30%), Gaps = 15/98 (15%)

Query: 5   HVPNQLVGAPIDTDVTLEC-------YVEAYPKSINYWVRDQGDMVISSERYEVESISRS 57
           H   +         V L C       +    P+    W ++     +  E          
Sbjct: 24  HYKREFRLE--GEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEE------ETR 75

Query: 58  IFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
           ++     L +    + D G+Y C  +N+    + SI L
Sbjct: 76  MWAQDGALWLLPALQEDSGTYVCTTRNASYCDKMSIEL 113

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score = 45.8 bits (108), Expect = 2e-07
 Identities = 10/76 (13%), Positives = 23/76 (30%), Gaps = 7/76 (9%)

Query: 20  TLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYK 79
            L  +          W +D   +   +E++               L +  +   D G Y+
Sbjct: 144 DLSEFTRDKTDVKIQWYKDSLLLDKDNEKF-------LSVRGTTHLLVHDVALEDAGYYR 196

Query: 80  CIAKNSLGEVESSIRL 95
           C+   +    + +I  
Sbjct: 197 CVLTFAHEGQQYNITR 212

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184

 Score = 50.7 bits (121), Expect = 2e-09
 Identities = 10/78 (12%), Positives = 23/78 (29%), Gaps = 16/78 (20%)

Query: 18  DVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGS 77
            +TL                 +G  +   +                 L++ ++   D G+
Sbjct: 114 SLTLTLESPPGSSPSVQCRSPRGKNIQGGKT----------------LSVSQLELQDSGT 157

Query: 78  YKCIAKNSLGEVESSIRL 95
           + C    +  +VE  I +
Sbjct: 158 WTCTVLQNQKKVEFKIDI 175

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184

 Score = 45.0 bits (106), Expect = 3e-07
 Identities = 14/94 (14%), Positives = 27/94 (28%), Gaps = 11/94 (11%)

Query: 8  NQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERY-----------EVESISR 56
           ++V       V L C          +W       ++ ++               +S   
Sbjct: 2  KKVVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRS 61

Query: 57 SIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVE 90
                  L IK +   D  +Y C  ++   EV+
Sbjct: 62 LWDQGNFPLIIKNLKIEDSDTYICEVEDQKEEVQ 95

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 48.8 bits (117), Expect = 3e-09
 Identities = 16/73 (21%), Positives = 28/73 (38%), Gaps = 7/73 (9%)

Query: 18 DVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGS 77
          DV L C +      ++ W++D    +  S++Y+V             L I+  +  D G 
Sbjct: 25 DVELRCELSRAGTPVH-WLKD-RKAIRKSQKYDVVCE-----GTMAMLVIRGASLKDAGE 77

Query: 78 YKCIAKNSLGEVE 90
          Y C  + S     
Sbjct: 78 YTCEVEASKSTAS 90

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208

 Score = 50.4 bits (120), Expect = 4e-09
 Identities = 24/96 (25%), Positives = 36/96 (37%), Gaps = 12/96 (12%)

Query: 1   HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFD 60
            P + V N  V       VTL C       +I  W+ +    +  +ER  +   +     
Sbjct: 112 QPFLQVTNTTV--KELDSVTLTCLSNDIGANI-QWLFN-SQSLQLTERMTLSQNNSI--- 164

Query: 61  FKMRLTIKKITKYDLGSYKCIAKNSLGEVES-SIRL 95
               L I  I + D G Y+C   N +    S SI+L
Sbjct: 165 ----LRIDPIKREDAGEYQCEISNPVSVRRSNSIKL 196

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208

 Score = 35.8 bits (82), Expect = 6e-04
 Identities = 13/84 (15%), Positives = 21/84 (25%), Gaps = 10/84 (11%)

Query: 18 DVTLECYVEAYPKSINYWVRDQ-GDMVISSERYEVESIS---------RSIFDFKMRLTI 67
          +V L  +          W +     +     R+   S           R I      L  
Sbjct: 16 NVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSLLF 75

Query: 68 KKITKYDLGSYKCIAKNSLGEVES 91
          + IT  D+G Y     +       
Sbjct: 76 QMITMKDMGVYTLDMTDENYRRTQ 99

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} Length = 117

 Score = 48.7 bits (116), Expect = 5e-09
 Identities = 23/100 (23%), Positives = 36/100 (36%), Gaps = 10/100 (10%)

Query: 2   PVIHVPNQLVGAPIDTDVTLECYVEAYPK-SINYWVRDQGDMVISSERYEVESISRSIFD 60
           P I      +        TL C  E  P  +I  W +    +    +        R +  
Sbjct: 10  PRIVEHPSDLIVSKGEPATLNCKAEGRPTPTI-EWYKGGERVETDKDDPRSH---RMLLP 65

Query: 61  ----FKMRLTIKKITKYDLGSYKCIAKNSLGEVES-SIRL 95
               F +R+   + ++ D G Y C+A+N LGE  S    L
Sbjct: 66  SGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASL 105

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A Length = 103

 Score = 48.1 bits (115), Expect = 6e-09
 Identities = 13/79 (16%), Positives = 28/79 (35%), Gaps = 11/79 (13%)

Query: 18 DVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGS 77
            TL C + +    +  W     +++   ++Y +           + L ++ +   D G 
Sbjct: 25 AATLRCVLSSVAAPVK-WCYG-NNVLRPGDKYSLRQEGA-----MLELVVRNLRPQDSGR 77

Query: 78 YKCIAKNSLGEVESSIRLY 96
          Y C      G+  +S  L 
Sbjct: 78 YSCSF----GDQTTSATLT 92

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289

 Score = 50.1 bits (119), Expect = 7e-09
 Identities = 14/95 (14%), Positives = 28/95 (29%), Gaps = 1/95 (1%)

Query: 2   PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDF 61
             + V           ++TL C V         W   + +     E    + +    +  
Sbjct: 182 INVSVNAVQTVVRQGENITLMCIVIGNEVVNFEWTYPRKESGRLVEPVT-DFLLDMPYHI 240

Query: 62  KMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRLY 96
           +  L I      D G+Y C    S+ + +    + 
Sbjct: 241 RSILHIPSAELEDSGTYTCNVTESVNDHQDEKAIN 275

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289

 Score = 41.2 bits (96), Expect = 8e-06
 Identities = 18/90 (20%), Positives = 27/90 (30%), Gaps = 11/90 (12%)

Query: 3  VIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFK 62
          V+  P   +   + +   L C   A    +  W R   +          E        F 
Sbjct: 2  VVTPPGPELVLNVSSTFVLTCSGSA---PVV-WERMSQEP-------PQEMAKAQDGTFS 50

Query: 63 MRLTIKKITKYDLGSYKCIAKNSLGEVESS 92
            LT+  +T  D G Y C   +S G     
Sbjct: 51 SVLTLTNLTGLDTGEYFCTHNDSRGLETDE 80

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score = 49.8 bits (118), Expect = 9e-09
 Identities = 10/78 (12%), Positives = 23/78 (29%), Gaps = 16/78 (20%)

Query: 18  DVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGS 77
            +TL                 +G  +   +                 L++ ++   D G+
Sbjct: 113 SLTLTLESPPGSSPSVQCRSPRGKNIQGGKT----------------LSVSQLELQDSGT 156

Query: 78  YKCIAKNSLGEVESSIRL 95
           + C    +  +VE  I +
Sbjct: 157 WTCTVLQNQKKVEFKIDI 174

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score = 44.0 bits (103), Expect = 1e-06
 Identities = 13/84 (15%), Positives = 24/84 (28%), Gaps = 11/84 (13%)

Query: 18 DVTLECYVEAYPKSINYWVRDQGDMVISSERY-----------EVESISRSIFDFKMRLT 66
           V L C          +W       ++ ++               +S           L 
Sbjct: 11 TVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLI 70

Query: 67 IKKITKYDLGSYKCIAKNSLGEVE 90
          IK +   D  +Y C  ++   EV+
Sbjct: 71 IKNLKIEDSDTYICEVEDQKEEVQ 94

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score = 42.9 bits (100), Expect = 3e-06
 Identities = 10/93 (10%), Positives = 26/93 (27%), Gaps = 4/93 (4%)

Query: 6   VPNQLVGAPIDTDVTLECYVEAYPKS---INYWVRDQGDMVISSERYEVESISRSIFDFK 62
            P       +     L    E    S   I + ++++   V    +     + + +    
Sbjct: 198 FPLAFTVEKLTGSGELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKL-PLH 256

Query: 63  MRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
           + L          G+     +   G++   + L
Sbjct: 257 LTLPQALPQYAGSGNLTLALEAKTGKLHQEVNL 289

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 115

 Score = 47.4 bits (113), Expect = 1e-08
 Identities = 14/78 (17%), Positives = 29/78 (37%), Gaps = 9/78 (11%)

Query: 18 DVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGS 77
            T  C +        +W  D    + ++E  E+++           LT++++   D G+
Sbjct: 30 SATFRCRISPANYEPVHWFLD-KTPLHANELNEIDAQP----GGYHVLTLRQLALKDSGT 84

Query: 78 YKCIAKNSLGEVESSIRL 95
              A    G+  +S  L
Sbjct: 85 IYFEA----GDQRASAAL 98

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195

 Score = 48.4 bits (115), Expect = 2e-08
 Identities = 15/85 (17%), Positives = 29/85 (34%), Gaps = 7/85 (8%)

Query: 17  TDVTLECYVEA--YPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMR---LTIKKIT 71
              TL C ++    P  + +W+RD   + ++        +     D  +    L I  + 
Sbjct: 18  LTGTLRCQLQVQGEPPEV-HWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSLQ 76

Query: 72  KYDLGSYKCIAKNSLGEVES-SIRL 95
             D G Y+C+         S    +
Sbjct: 77  LSDTGQYQCLVFLGHQTFVSQPGYV 101

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195

 Score = 47.6 bits (113), Expect = 3e-08
 Identities = 14/92 (15%), Positives = 31/92 (33%), Gaps = 14/92 (15%)

Query: 2   PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINY-WVRDQGDMVISSERYEVESISRSIFD 60
           P      +      +T   L C  +  P+ ++  W++D    + ++  +  +        
Sbjct: 107 PYFLEEPEDRTVAANTPFNLSCQAQGPPEPVDLLWLQD-AVPLATAPGHGPQR------- 158

Query: 61  FKMRLTIKKITKYDLGSYKCIAKNSLGEVESS 92
               L +  +      S+ C A N+ G   S 
Sbjct: 159 ---SLHVPGLN--KTSSFSCEAHNAKGVTTSR 185

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens} Length = 95

 Score = 45.8 bits (109), Expect = 3e-08
 Identities = 17/78 (21%), Positives = 29/78 (37%), Gaps = 11/78 (14%)

Query: 18 DVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGS 77
              E   E     +  W R  G  + +S +Y + +        +  LT++++   D GS
Sbjct: 25 PAVFEAETERAGVKVR-WQRG-GSDISASNKYGLATE-----GTRHTLTVREVGPADQGS 77

Query: 78 YKCIAKNSLGEVESSIRL 95
          Y  IA    G  +    L
Sbjct: 78 YAVIA----GSSKVKFDL 91

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 48.3 bits (114), Expect = 3e-08
 Identities = 16/96 (16%), Positives = 30/96 (31%), Gaps = 21/96 (21%)

Query: 2   PVIHVPN--QLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIF 59
           P +   +       P ++  T  C     P      ++D    +   E   V        
Sbjct: 369 PRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIGESVTV-------- 420

Query: 60  DFKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
                      T+   G+Y C A+++ GEV   + +
Sbjct: 421 -----------TRDLEGTYLCRARSTQGEVTREVTV 445

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score = 45.8 bits (109), Expect = 4e-08
 Identities = 15/83 (18%), Positives = 27/83 (32%), Gaps = 10/83 (12%)

Query: 13 APIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITK 72
            +  ++ L+C +         W ++ G  V  S+R +V    R       +L I     
Sbjct: 19 VNLGKEICLKCEISENIPGK--WTKN-GLPVQESDRLKVVQKGR-----IHKLVIANALT 70

Query: 73 YDLGSYKCIAKNSLGEVESSIRL 95
           D G Y          V    ++
Sbjct: 71 EDEGDYVFAPDA--YNVTLPAKV 91

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 45.9 bits (109), Expect = 5e-08
 Identities = 18/78 (23%), Positives = 27/78 (34%), Gaps = 11/78 (14%)

Query: 18 DVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGS 77
           V L C +         W +D G  V  SE   V+   R     K RL + +    D G 
Sbjct: 27 RVVLTCELSRVDFPAT-WYKD-GQKVEESELLVVKMDGR-----KHRLILPEAKVQDSGE 79

Query: 78 YKCIAKNSLGEVESSIRL 95
          ++C        V +   +
Sbjct: 80 FECRT----EGVSAFFGV 93

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265

 Score = 47.4 bits (112), Expect = 5e-08
 Identities = 13/79 (16%), Positives = 25/79 (31%), Gaps = 19/79 (24%)

Query: 17  TDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLG 76
           +  T  C     P      ++D G   +                         +T+   G
Sbjct: 201 SQQTPMCQAWGNPLPELKCLKD-GTFPLPIGE------------------SVTVTRDLEG 241

Query: 77  SYKCIAKNSLGEVESSIRL 95
           +Y C A+++ GEV   + +
Sbjct: 242 TYLCRARSTQGEVTREVTV 260

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A Length = 100

 Score = 45.5 bits (108), Expect = 6e-08
 Identities = 17/79 (21%), Positives = 26/79 (32%), Gaps = 11/79 (13%)

Query: 18 DVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGS 77
           V     + A PK    W ++ G  +  S +Y  E         +  L I      D   
Sbjct: 25 RVRFVVEL-ADPKLEVKWYKN-GQEIRPSTKYIFEHKGC-----QRILFINNCQMTDDSE 77

Query: 78 YKCIAKNSLGEVESSIRLY 96
          Y   A    G+ + S  L+
Sbjct: 78 YYVTA----GDEKCSTELF 92

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens} Length = 113

 Score = 44.7 bits (106), Expect = 2e-07
 Identities = 13/79 (16%), Positives = 26/79 (32%), Gaps = 12/79 (15%)

Query: 18  DVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGS 77
              L C +         W +   + +   +R+ +          +  L I+ +   D G 
Sbjct: 36  TAVLRCELSKMAPVE--WWKG-HETLRDGDRHSLRQDGA-----RCELQIRGLVAEDAGE 87

Query: 78  YKCIAKNSLGEVESSIRLY 96
           Y C+     G+  +S  L 
Sbjct: 88  YLCMC----GKERTSAMLT 102

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A Length = 108

 Score = 43.9 bits (104), Expect = 2e-07
 Identities = 16/95 (16%), Positives = 30/95 (31%), Gaps = 12/95 (12%)

Query: 2  PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDF 61
                 +   A      TL+C +         W +   + +    RY ++         
Sbjct: 9  ARFTQDLKTKEASEGATATLQCELSKVAPVE--WKKG-PETLRDGGRYSLKQDGT----- 60

Query: 62 KMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRLY 96
          +  L I  ++  D G Y C+     G+  +S  L 
Sbjct: 61 RCELQIHDLSVADAGEYSCMC----GQERTSATLT 91

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 43.9 bits (104), Expect = 2e-07
 Identities = 16/79 (20%), Positives = 30/79 (37%), Gaps = 11/79 (13%)

Query: 18 DVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGS 77
               C  E +P +   W +     + +S +++            +RLTI  + K D  +
Sbjct: 25 TAVFTCKTE-HPAATVTWRKG-LLELRASGKHQPSQE-----GLTLRLTISALEKADSDT 77

Query: 78 YKCIAKNSLGEVESSIRLY 96
          Y C      G+ +S  +L 
Sbjct: 78 YTCDI----GQAQSRAQLL 92

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 45.4 bits (106), Expect = 3e-07
 Identities = 17/100 (17%), Positives = 32/100 (32%), Gaps = 13/100 (13%)

Query: 1   HPVIHVPNQLVGAPIDTDVTLECYVEAYPK-SINYWVRDQG------DMVISSERYEVE- 52
              I     +V     + V + C        SI YW   +G       +++ SE +    
Sbjct: 331 ESTIPRSPTVVKGVAGSSVAVLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQ 390

Query: 53  -----SISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLG 87
                S+     +    + + ++T  D G Y C+      
Sbjct: 391 YEGRLSLLEEPGNGTFTVILNQLTSRDAGFYWCLTNGDTL 430

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 44.6 bits (104), Expect = 8e-07
 Identities = 15/105 (14%), Positives = 32/105 (30%), Gaps = 11/105 (10%)

Query: 1   HPVIHVPNQLVGAPIDTDVTLECYVEA-YPKSINYWVRDQG---DMVISSERYEVE--SI 54
            P +    ++    +   VT+ C  +    +      +  G    +VI S  Y     + 
Sbjct: 112 GPGLLNDTKVYTVDLGRTVTINCPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTG 171

Query: 55  SRSIFD-----FKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIR 94
              +           + I ++   D G Y C A +     + +  
Sbjct: 172 RIRLDIQGTGQLLFSVVINQLRLSDAGQYLCQAGDDSNSNKKNAD 216

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 42.7 bits (99), Expect = 4e-06
 Identities = 13/85 (15%), Positives = 21/85 (24%), Gaps = 3/85 (3%)

Query: 11  VGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKI 70
           +G  +       C   +                    R     ++    D    + I  +
Sbjct: 241 LGPEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRI---LLNPQDKDGSFSVVITGL 297

Query: 71  TKYDLGSYKCIAKNSLGEVESSIRL 95
            K D G Y C A +     E S   
Sbjct: 298 RKEDAGRYLCGAHSDGQLQEGSPIQ 322

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 41.5 bits (96), Expect = 9e-06
 Identities = 16/96 (16%), Positives = 30/96 (31%), Gaps = 7/96 (7%)

Query: 1   HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFD 60
             V      ++G  +       C   +Y K   YW +       +    +       +  
Sbjct: 446 LKVPGNVTAVLGETLKVPCHFPCKFSSYEK---YWCKWNNTGCQALPSQDEGPSKAFVNC 502

Query: 61  ----FKMRLTIKKITKYDLGSYKCIAKNSLGEVESS 92
                 + LT+  +T+ D G Y C  K      E++
Sbjct: 503 DENSRLVSLTLNLVTRADEGWYWCGVKQGHFYGETA 538

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 37.7 bits (86), Expect = 2e-04
 Identities = 17/88 (19%), Positives = 33/88 (37%), Gaps = 13/88 (14%)

Query: 19  VTLECYVE---AYPKSINYWVRDQGDM----VISSERYEVE------SISRSIFDFKMRL 65
           V++ CY         +  YW R         +ISSE Y         +++    +    +
Sbjct: 18  VSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVV 77

Query: 66  TIKKITKYDLGSYKCIAKNSLGEVESSI 93
            I ++++ D G YKC    +   +   +
Sbjct: 78  NIAQLSQDDSGRYKCGLGINSRGLSFDV 105

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus} Length = 106

 Score = 43.1 bits (102), Expect = 4e-07
 Identities = 16/78 (20%), Positives = 27/78 (34%), Gaps = 9/78 (11%)

Query: 18 DVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGS 77
              +C V    K    W ++ G  V  S+R  +  + R       +L I  +   D G 
Sbjct: 25 QAVFKCEVSD-EKVTGKWYKN-GVEVRPSKRITISHVGR-----FHKLVIDDVRPEDEGD 77

Query: 78 YKCIAKNSLGEVESSIRL 95
          Y  +       +  S +L
Sbjct: 78 YTFVPDG--YALSLSAKL 93

>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens} Length = 124

 Score = 43.4 bits (102), Expect = 5e-07
 Identities = 17/85 (20%), Positives = 33/85 (38%), Gaps = 12/85 (14%)

Query: 18 DVTLECYVEAYPKSINYWVRDQGDM-------VISSERYEVESISRSIFDFKMRLTIKKI 70
           +TL+C       S   W+   G         V+ + +Y++   S +       +T+  +
Sbjct: 18 TLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHHSANQL----SITVPNV 73

Query: 71 TKYDLGSYKCIAKNSLGEVESSIRL 95
          T  D G YKC+   S       +++
Sbjct: 74 TLQDEGVYKCLH-YSDSVSTKEVKV 97

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 104

 Score = 42.7 bits (101), Expect = 7e-07
 Identities = 17/79 (21%), Positives = 35/79 (44%), Gaps = 10/79 (12%)

Query: 18  DVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGS 77
            + L   +  +   +  W+++  ++ +S  +Y  ESI       K  LTI + +  D  +
Sbjct: 33  KIRLTVELADHDAEV-KWLKNGQEIQMSGSKYIFESIGA-----KRTLTISQCSLADDAA 86

Query: 78  YKCIAKNSLGEVESSIRLY 96
           Y+C+     G  + S  L+
Sbjct: 87  YQCVV----GGEKCSTELF 101

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A Length = 93

 Score = 42.3 bits (100), Expect = 7e-07
 Identities = 13/79 (16%), Positives = 22/79 (27%), Gaps = 11/79 (13%)

Query: 18 DVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGS 77
              E  + + P     W    G  + +S   E+    +     K  L +        G 
Sbjct: 22 TAHFEIEL-SEPDVHGQWKLK-GQPLAASPDCEIIEDGK-----KHILILHNCQLGMTGE 74

Query: 78 YKCIAKNSLGEVESSIRLY 96
              A N     +S+  L 
Sbjct: 75 VSFQAAN----TKSAANLK 89

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 113

 Score = 42.8 bits (101), Expect = 8e-07
 Identities = 19/85 (22%), Positives = 31/85 (36%), Gaps = 11/85 (12%)

Query: 11 VGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKI 70
          V A     V L C +   P +   W +D G+ V+ S    ++       D   RL +  +
Sbjct: 23 VAAVRLERVVLTCEL-CRPWAEVRWTKD-GEEVVESPALLLQKE-----DTVRRLVLPAV 75

Query: 71 TKYDLGSYKCIAKNSLGEVESSIRL 95
             D G Y C       +  +S  +
Sbjct: 76 QLEDSGEYLCEI----DDESASFTV 96

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A Length = 226

 Score = 43.9 bits (103), Expect = 1e-06
 Identities = 19/109 (17%), Positives = 36/109 (33%), Gaps = 17/109 (15%)

Query: 4   IHVPNQLVGAPIDTDVTLECYVEAYPKSIN---YWVRDQGDMVISSERYEVESISRSIFD 60
           +  P+  + A +  D  L C++     +      WV      V++      E   R    
Sbjct: 7   VLGPSGPILAMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAP 66

Query: 61  FKMR--------------LTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
           ++ R              L I  +T  D G Y C  ++     ++ + L
Sbjct: 67  YRGRTSILRDGITAGKAALRIHNVTASDSGKYLCYFQDGDFYEKALVEL 115

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A Length = 226

 Score = 35.8 bits (82), Expect = 6e-04
 Identities = 15/97 (15%), Positives = 35/97 (36%), Gaps = 5/97 (5%)

Query: 1   HPVIHVPNQLVGAPIDTDVTLECYVE-AYPKSINYWVRDQGDMVISSERYEVESISRSIF 59
             +    +  V    D  + LEC     YP+    W  ++G+  I +    V +    ++
Sbjct: 118 AALGSDLHVDVKGYKDGGIHLECRSTGWYPQPQIQWSNNKGE-NIPTVEAPVVADGVGLY 176

Query: 60  DFKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRLY 96
                + ++  +        C  ++SL  +E +  + 
Sbjct: 177 AVAASVIMRGSSG---EGVSCTIRSSLLGLEKTASIS 210

>1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system; 1.45A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E 3csp_A 1py9_A Length = 139

 Score = 43.0 bits (101), Expect = 1e-06
 Identities = 17/109 (15%), Positives = 37/109 (33%), Gaps = 17/109 (15%)

Query: 4   IHVPNQLVGAPIDTDVTLECYVEAYPKSIN---YWVRDQGDMVISSERYEVESISRSIFD 60
           +  P   + A +  +  L C +     +      W R     V+   R   +  +    +
Sbjct: 9   VIGPGHPIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPE 68

Query: 61  FKMR--------------LTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
           ++ R              L I+ +   D G Y C  ++   + E+++ L
Sbjct: 69  YRGRTELLKESIGEGKVALRIQNVRFSDEGGYTCFFRDHSYQEEAAVEL 117

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 42.0 bits (99), Expect = 1e-06
 Identities = 13/72 (18%), Positives = 22/72 (30%), Gaps = 7/72 (9%)

Query: 18 DVTLECYV-EAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLG 76
            + EC +          W    G  V SS R++     R     K  L +++    D G
Sbjct: 25 SCSFECVLSHESASDPAMWTVG-GKTVGSSSRFQATRQGR-----KYILVVREAAPSDAG 78

Query: 77 SYKCIAKNSLGE 88
                +    +
Sbjct: 79 EVVFSVRGLTSK 90

>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 102

 Score = 41.6 bits (98), Expect = 2e-06
 Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 11/78 (14%)

Query: 18 DVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGS 77
            TL C V      +  W +D G  + SS +  VE++         RL +++  + + G 
Sbjct: 28 SATLSCEVAQAQTEVT-WYKD-GKKLSSSSKVRVEAVGC-----TRRLVVQQAGQAEAGE 80

Query: 78 YKCIAKNSLGEVESSIRL 95
          Y C A    G  + S RL
Sbjct: 81 YSCEA----GGQQLSFRL 94

>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor, adhesion, structural genomics, NEW YORK STR genomics research consortium, nysgrc; 1.70A {Homo sapiens} PDB: 3rq3_A 3udw_A* 3ucr_A Length = 117

 Score = 41.8 bits (98), Expect = 2e-06
 Identities = 17/100 (17%), Positives = 31/100 (31%), Gaps = 8/100 (8%)

Query: 3   VIHVPNQLVGAPIDTDVTLECYVEAYPKSINY--WVRDQGDMVISSERYEVESIS----R 56
            I      + A     + L+C++ +    +    W +    + I +             R
Sbjct: 6   TIETTGN-ISAEKGGSIILQCHLSSTTAQVTQVNWEQQDQLLAICNADLGWHISPSFKDR 64

Query: 57  SIFDFKMRLTIKKITKYDLGSYKC-IAKNSLGEVESSIRL 95
                 + LT++ +T  D G Y C       G     I L
Sbjct: 65  VAPGPGLGLTLQSLTVNDTGEYFCIYHTYPDGTYTGRIFL 104

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* Length = 268

 Score = 42.9 bits (100), Expect = 2e-06
 Identities = 16/114 (14%), Positives = 38/114 (33%), Gaps = 21/114 (18%)

Query: 3   VIHVPNQLVGAPIDTDVTLECYVEAYPKSIN---YWVRDQG-----DMVISSERYEVESI 54
           V+    + +   +     + C +++  +       W+   G     + V+S +       
Sbjct: 120 VLPEEPRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSGK 179

Query: 55  SRSIFDFKMR-------------LTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
            +S+  F+ R             + ++ + + D G Y C       E   +I L
Sbjct: 180 FQSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVL 233

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* Length = 268

 Score = 40.2 bits (93), Expect = 2e-05
 Identities = 17/111 (15%), Positives = 31/111 (27%), Gaps = 17/111 (15%)

Query: 2   PVIHVPNQLVGAPIDTDVTLECYV---EAYPKSINYWVRDQGDMVISSERYEVESISRSI 58
           P + V +  +   +   V + C V   E        W+  +     S       S     
Sbjct: 6   PGLTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVP 65

Query: 59  F-DFKMR-------------LTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
              F+ R             L ++ + K D G Y C  +     +     +
Sbjct: 66  TGRFQNRSHLVGDTFHNDGSLLLQDVQKADEGIYTCEIRLKNESMVMKKPV 116

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* Length = 176

 Score = 42.2 bits (99), Expect = 3e-06
 Identities = 14/92 (15%), Positives = 28/92 (30%), Gaps = 17/92 (18%)

Query: 2   PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINY-WVRDQGDMVISSERYEVESISRSIFD 60
            ++    ++V       + L C+           + +D   +    E +           
Sbjct: 88  LLLQASAEVVM--EGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWYENHN---------- 135

Query: 61  FKMRLTIKKITKYDLGSYKCIAKNSLGEVESS 92
               ++I   T  D G+Y C  K    + ES 
Sbjct: 136 ----ISITNATVEDSGTYYCTGKVWQLDYESE 163

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A Length = 170

 Score = 42.1 bits (99), Expect = 3e-06
 Identities = 8/76 (10%), Positives = 16/76 (21%), Gaps = 15/76 (19%)

Query: 18  DVTLECYVEAYPKSINY-WVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLG 76
            + L C+       +   + ++      S                    +I +      G
Sbjct: 102 TIMLRCHSWKDKPLVKVTFFQNGKSQKFSHLDPT--------------FSIPQANHSHSG 147

Query: 77  SYKCIAKNSLGEVESS 92
            Y C          S 
Sbjct: 148 DYHCTGNIGYTLFSSK 163

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A Length = 170

 Score = 36.3 bits (84), Expect = 4e-04
 Identities = 14/85 (16%), Positives = 27/85 (31%), Gaps = 17/85 (20%)

Query: 2  PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINY-WVRDQGDMVISSERYEVESISRSIFD 60
           V+ +    +    +  VTL C     P+S +  W  + G+++ +  +            
Sbjct: 5  AVLKLEPPWINVLQEDSVTLTCQGARSPESDSIQWFHN-GNLIPTHTQ------------ 51

Query: 61 FKMRLTIKKITKYDLGSYKCIAKNS 85
                  K    D G Y C    +
Sbjct: 52 ---PSYRFKANNNDSGEYTCQTGQT 73

>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus} Length = 108

 Score = 40.6 bits (95), Expect = 4e-06
 Identities = 13/85 (15%), Positives = 24/85 (28%), Gaps = 12/85 (14%)

Query: 18  DVTLECYVEAYPKSINYWVRDQGDM-------VISSERYEVESISRSIFDFKMRLTIKKI 70
              L C V+    +   W               +   R E+   S         +++  +
Sbjct: 23  TAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHEL----SISVSDV 78

Query: 71  TKYDLGSYKCIAKNSLGEVESSIRL 95
           +  D G Y C    ++    S   L
Sbjct: 79  SLSDEGQYTCSL-FTMPVKTSKAYL 102

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens} Length = 731

 Score = 42.1 bits (98), Expect = 6e-06
 Identities = 13/81 (16%), Positives = 25/81 (30%), Gaps = 3/81 (3%)

Query: 13  APIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITK 72
                  T +C       + +       D+  +  +    + S     F     +   TK
Sbjct: 176 VNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSS---RRFIASFNVVNTTK 232

Query: 73  YDLGSYKCIAKNSLGEVESSI 93
            D G Y+C+ +   G   S+ 
Sbjct: 233 RDAGKYRCMIRTEGGVGISNY 253

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A Length = 202

 Score = 41.3 bits (96), Expect = 6e-06
 Identities = 15/78 (19%), Positives = 34/78 (43%), Gaps = 1/78 (1%)

Query: 18  DVTLECYVE-AYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLG 76
            +T++C V   YP         +GD ++ S+ +  ++  +S+    + +T   + +    
Sbjct: 108 PITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGK 167

Query: 77  SYKCIAKNSLGEVESSIR 94
              C AK  + E++S   
Sbjct: 168 VLVCRAKLHIDEMDSVPT 185

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A Length = 202

 Score = 40.1 bits (93), Expect = 2e-05
 Identities = 20/93 (21%), Positives = 33/93 (35%), Gaps = 10/93 (10%)

Query: 4  IHV-PNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFK 62
          I   P     A I   V+L C           W R Q D  ++ +     + S       
Sbjct: 3  IETTPESRYLAQIGDSVSLTCSTTGCESPFFSW-RTQIDSPLNGKVTNEGTTST------ 55

Query: 63 MRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
            LT+  ++  +  SY C A     ++E  I++
Sbjct: 56 --LTMNPVSFGNEHSYLCTATCESRKLEKGIQV 86

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score = 41.1 bits (96), Expect = 9e-06
 Identities = 15/92 (16%), Positives = 25/92 (27%), Gaps = 10/92 (10%)

Query: 1   HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFD 60
            PV++             VTL C  +   +     +            + + S +    +
Sbjct: 171 APVLNASVTSP-LLEGNLVTLSCETKLLLQRPGLQLY---------FSFYMGSKTLRGRN 220

Query: 61  FKMRLTIKKITKYDLGSYKCIAKNSLGEVESS 92
                 I    + D G Y C A    G V   
Sbjct: 221 TSSEYQILTARREDSGLYWCEAATEDGNVLKR 252

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score = 41.1 bits (96), Expect = 9e-06
 Identities = 12/79 (15%), Positives = 19/79 (24%), Gaps = 15/79 (18%)

Query: 18  DVTLECYVEAYPKSINY-WVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLG 76
            + L C+        N  + R+                          LTI K      G
Sbjct: 99  PLALRCHAWKDKLVYNVLYYRNGKAFKFFHWNSN--------------LTILKTNISHNG 144

Query: 77  SYKCIAKNSLGEVESSIRL 95
           +Y C          + I +
Sbjct: 145 TYHCSGMGKHRYTSAGISV 163

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score = 40.7 bits (95), Expect = 1e-05
 Identities = 19/85 (22%), Positives = 26/85 (30%), Gaps = 17/85 (20%)

Query: 2  PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINY-WVRDQGDMVISSERYEVESISRSIFD 60
           VI +    V    +  VTL C V   P S +  W  + G    +S              
Sbjct: 2  AVITLQPPWVSVFQEETVTLHCEVLHLPGSSSTQWFLN-GTATQTSTP------------ 48

Query: 61 FKMRLTIKKITKYDLGSYKCIAKNS 85
                I   +  D G Y+C    S
Sbjct: 49 ---SYRITSASVNDSGEYRCQRGLS 70

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A Length = 182

 Score = 40.6 bits (95), Expect = 1e-05
 Identities = 15/79 (18%), Positives = 24/79 (30%), Gaps = 17/79 (21%)

Query: 17  TDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLG 76
            + TL C V           +D G  +  S+R                +   K T     
Sbjct: 116 INTTLTCEVMNGTDPELNLYQD-GKHLKLSQR----------------VITHKWTTSLSA 158

Query: 77  SYKCIAKNSLGEVESSIRL 95
            +KC A N + +  S   +
Sbjct: 159 KFKCTAGNKVSKESSVEPV 177

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A Length = 182

 Score = 38.7 bits (90), Expect = 6e-05
 Identities = 15/83 (18%), Positives = 25/83 (30%), Gaps = 5/83 (6%)

Query: 18 DVTLECYVEAYPKSIN--YWVRDQGDMVISSERYEVESI---SRSIFDFKMRLTIKKITK 72
          D+ L+         I+   W +      I+  R E E+              L IK +  
Sbjct: 16 DINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHLKT 75

Query: 73 YDLGSYKCIAKNSLGEVESSIRL 95
           D   YK    ++ G+       
Sbjct: 76 DDQDIYKVSIYDTKGKNVLEKIF 98

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E* Length = 204

 Score = 41.0 bits (95), Expect = 1e-05
 Identities = 17/77 (22%), Positives = 29/77 (37%), Gaps = 10/77 (12%)

Query: 17  TDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKY-DL 75
           T V L C    YP S   W  +    +   E        ++I   +  L++K+ ++    
Sbjct: 129 TTVILTCPQ--YPGSEILWQHN-DKNIGGDEDD------KNIGSDEDHLSLKEFSELEQS 179

Query: 76  GSYKCIAKNSLGEVESS 92
           G Y C  + S  E  + 
Sbjct: 180 GYYVCYPRGSKPEDANF 196

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* Length = 175

 Score = 39.5 bits (92), Expect = 3e-05
 Identities = 13/76 (17%), Positives = 20/76 (26%), Gaps = 15/76 (19%)

Query: 18  DVTLECYVEAYPKSINY-WVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLG 76
            + L C+           ++++  D        +                I K T  D G
Sbjct: 105 PIHLRCHSWKNTALHKVTYLQNGKDRKYFHHNSD--------------FHIPKATLKDSG 150

Query: 77  SYKCIAKNSLGEVESS 92
           SY C        V S 
Sbjct: 151 SYFCRGLVGSKNVSSE 166

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 101

 Score = 38.5 bits (90), Expect = 3e-05
 Identities = 10/79 (12%), Positives = 23/79 (29%), Gaps = 7/79 (8%)

Query: 18 DVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGS 77
           V +   V      +  W+++   + ++ E              +  L    + + D G 
Sbjct: 25 RVEMAVEVSEEGAQVM-WMKN--GVELTREDSFKARYRFKKDGKRHILIFSDVVQEDRGR 81

Query: 78 YKCIAKNSLGEVESSIRLY 96
          Y+ I        +    L 
Sbjct: 82 YQVITNGG----QCEAELI 96

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C* Length = 204

 Score = 39.5 bits (92), Expect = 3e-05
 Identities = 12/76 (15%), Positives = 19/76 (25%), Gaps = 15/76 (19%)

Query: 18  DVTLECYVEAYPKSINY-WVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLG 76
            + L C+           ++++           +                I K T  D G
Sbjct: 105 PIHLRCHSWKNTALHKVTYLQNGKGRKYFHHNSD--------------FYIPKATLKDSG 150

Query: 77  SYKCIAKNSLGEVESS 92
           SY C        V S 
Sbjct: 151 SYFCRGLVGSKNVSSE 166

>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein, immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 1p9m_C 2arw_A Length = 325

 Score = 39.8 bits (92), Expect = 3e-05
 Identities = 20/96 (20%), Positives = 33/96 (34%), Gaps = 13/96 (13%)

Query: 2  PVIHVPNQLVGAPIDTDVTLEC-YVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFD 60
          P   V   ++ +     VTL C  VE    +  +WV         S       + R    
Sbjct: 7  PAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLR--KPAAGSHPSRWAGMGR---- 60

Query: 61 FKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRLY 96
             RL ++ +  +D G+Y C      G    ++ L 
Sbjct: 61 ---RLLLRSVQLHDSGNYSCYRA---GRPAGTVHLL 90

>1eaj_A Coxsackie virus and adenovirus receptor; virus/viral protein receptor, immunoglobulin V domain fold, symmetric dimer; 1.35A {Homo sapiens} SCOP: b.1.1.1 PDB: 1f5w_A 2j12_B 2j1k_A 2wbw_B* 2w9l_A* 1rsf_A 1jew_R 1kac_B 1p69_B 1p6a_B Length = 126

 Score = 37.9 bits (88), Expect = 8e-05
 Identities = 18/115 (15%), Positives = 32/115 (27%), Gaps = 22/115 (19%)

Query: 3   VIHVPNQLVGAPIDTDVTLECYVEAYPKSIN----YWVRDQGDMVISSE----RYEVESI 54
            I  P +++         L C     P+        W+    D     +        +  
Sbjct: 7   SITTPEEMIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIY 66

Query: 55  SRSIFDFKMR--------------LTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
                D K R              + +  +   D+G+Y+C  K + G     I L
Sbjct: 67  DDYYPDLKGRVHFTSNDLKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKIHL 121

>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 37.5 bits (86), Expect = 9e-05
 Identities = 15/93 (16%), Positives = 27/93 (29%), Gaps = 6/93 (6%)

Query: 9   QLVGAPIDTDVTLECYVEAYPKSIN---YWVRDQGDMVISSE--RYEV-ESISRSIFDFK 62
             V      D  +   V            W + +   + S    R+   ES + +   + 
Sbjct: 20  DSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFKESHNSASNVYT 79

Query: 63  MRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
           + L I K+   D G Y+   K           +
Sbjct: 80  VELHIGKVVLGDRGYYRLEVKAKDTCDSCGFNI 112

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} Length = 304

 Score = 38.3 bits (88), Expect = 1e-04
 Identities = 18/97 (18%), Positives = 29/97 (29%), Gaps = 21/97 (21%)

Query: 2   PVIHVPNQLVGAPIDTDVTLECYVEAY---PKSINYWVRDQ---GDMVISSERYEVESIS 55
            V     Q       TDV L   V+       + NY +      G+ VI + +       
Sbjct: 93  IVNITEPQHFYVSSQTDVELHATVKFSGGKTPADNYELHYSWSKGEDVIDTTQ------- 145

Query: 56  RSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVESS 92
                    +TI++ T    G Y         +  +S
Sbjct: 146 --------DITIQEFTADKNGVYTVKVWGESEDSAAS 174

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 103

 Score = 36.9 bits (86), Expect = 1e-04
 Identities = 15/68 (22%), Positives = 24/68 (35%), Gaps = 5/68 (7%)

Query: 18 DVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGS 77
           V LEC V     ++  W ++ G+ +I   +             K  L I+  TK D   
Sbjct: 24 RVELECEVSEDDANVK-WFKN-GEEIIPGPKSRYRIRVE---GKKHILIIEGATKADAAE 78

Query: 78 YKCIAKNS 85
          Y  +    
Sbjct: 79 YSVMTTGG 86

>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion; 2.40A {Homo sapiens} Length = 145

 Score = 37.5 bits (86), Expect = 1e-04
 Identities = 12/75 (16%), Positives = 23/75 (30%), Gaps = 11/75 (14%)

Query: 13  APIDTDVTLECYVEAYPKSINYWVRDQGDM-------VISSERYEVESISRSIFDFKMRL 65
                 V L+C V+ +  S   W               +   R ++ + +         +
Sbjct: 50  VVAGGTVVLKCQVKDHEDSSLQWSNPAQQTLYFGEKRALRDNRIQLVTSTPHEL----SI 105

Query: 66  TIKKITKYDLGSYKC 80
           +I  +   D G Y C
Sbjct: 106 SISNVALADEGEYTC 120

>2pnd_A V-SET and immunoglobulin domain containing 4; complement receptor, IG-like domain, immune system; 1.00A {Mus musculus} PDB: 2icc_A 2ice_S* 2icf_S* Length = 119

 Score = 36.1 bits (83), Expect = 3e-04
 Identities = 16/95 (16%), Positives = 30/95 (31%), Gaps = 16/95 (16%)

Query: 1  HPVIHVPNQLVGAPIDTDVTLECYVE---AYPKSINYWVRDQGDMVISSERYEVESISRS 57
          HP +  P  + G     DV ++C  +    Y + +  W+   G   ++    +       
Sbjct: 2  HPTLKTPESVTG-TWKGDVKIQCIYDPLRGYRQVLVKWLVRHGSDSVTIFLRDSTGDHIQ 60

Query: 58 IFDFKMR------------LTIKKITKYDLGSYKC 80
             ++ R            L I  +   D   Y C
Sbjct: 61 QAKYRGRLKVSHKVPGDVSLQINTLQMDDRNHYTC 95

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 Length = 176

 Score = 36.1 bits (83), Expect = 4e-04
 Identities = 15/91 (16%), Positives = 29/91 (31%), Gaps = 3/91 (3%)

Query: 8  NQLVGAPIDTDVTLECYVEAYPKSIN--YWVRDQGDMVISSERYEVESISRSIFDFKM-R 64
          +  V   +   + L          I+   W R    +     + +    S +        
Sbjct: 3  SGTVWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGD 62

Query: 65 LTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
          L IK +T+ D G+Y     ++ G    +  L
Sbjct: 63 LKIKNLTRDDSGTYNVTVYSTNGTRILNKAL 93

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 35.7 bits (81), Expect = 6e-04
 Identities = 5/14 (35%), Positives = 12/14 (85%)

Query: 83 KNSLGEVESSIRLY 96
          K +L ++++S++LY
Sbjct: 19 KQALKKLQASLKLY 32

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	96
3knb_A	100	Titin; IG-like, titin, OBSL1, ATP-binding, calmodu	99.82
3knb_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, AT	99.82
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	99.78
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	99.77
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	99.77
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	99.77
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	99.77
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	99.76
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	99.75
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	99.74
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	99.73
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	99.73
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	99.73
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	99.73
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	99.73
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	99.72
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	99.72
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	99.72
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	99.71
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	99.71
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	99.7
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	99.69
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	99.69
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	99.69
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	99.68
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	99.68
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	99.67
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	99.66
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	99.65
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	99.65
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	99.63
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	99.62
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	99.62
1he7_A	126	High affinity nerve growth factor receptor; transf	99.61
2lvc_A	91	Obscurin-like protein 1; structural genomics, nort	99.61
3m45_A	108	Cell adhesion molecule 2; IG fold, dimer, disulfid	99.61
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	99.61
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	99.6
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	99.6
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	99.59
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	99.59
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	99.59
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	99.59
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	99.59
2lu7_A	84	Obscurin-like protein 1; structural genomics, nort	99.58
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	99.58
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	99.58
3rbg_A	124	Cytotoxic and regulatory T-cell molecule; IGV, crt	99.58
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	99.58
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	99.57
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	99.57
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	99.57
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	99.57
2edn_A	118	Myosin-binding protein C, fast-type; beta-sandwich	99.56
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	99.56
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	99.56
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	99.56
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	99.56
4hwu_A	95	Fibroblast growth factor receptor 2; FGFR2, KGFR,	99.55
4fa8_A	203	Secreted protein BARF1; immunoglobulin-like domain	99.55
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	99.55
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	99.55
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	99.55
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	99.55
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	99.55
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	99.55
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	99.54
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	99.54
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	99.54
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	99.54
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	99.54
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	99.53
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	99.53
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	99.53
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	99.53
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	99.53
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	99.52
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	99.52
2ens_A	96	Advanced glycosylation END product-specific recept	99.52
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	99.51
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	99.51
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	99.51
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	99.51
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	99.49
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	99.49
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	99.49
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	99.48
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	99.48
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	99.48
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	99.47
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	99.47
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	99.47
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	99.46
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	99.46
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	99.46
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	99.46
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	99.46
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	99.45
1jhl_L	108	IGG1-kappa D11.15 FV (light chain); complex(antibo	99.45
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	99.45
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	99.45
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.45
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	99.45
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	99.45
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	99.45
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	99.44
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	99.44
2e6q_A	112	Obscurin-like protein 1; IG-like domain, structura	99.43
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	99.43
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	99.43
3khq_A	133	B-cell antigen receptor complex-associated protei	99.42
1z9m_A	145	GAPA225; nectin-like, IG-like domain, V domain, ce	99.42
2q20_A	109	VK1 O18/O8 germline light chain variable domain; A	99.42
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	99.42
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	99.42
2e27_L	119	Anti-ciguatoxin antibody, light chain; immunoglobu	99.41
2ywz_A	111	NEW antigen receptor variable domain; IG VNAR, imm	99.41
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	99.41
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	99.4
4fqp_A	313	Poliovirus receptor; immunoglobulin-like domain, I	99.4
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	99.4
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	99.4
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	99.4
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	99.4
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	99.4
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	99.39
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	99.39
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	99.38
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	99.38
3moq_A	126	NEW antigen receptor variable domain, P3(40) PEPT	99.38
1i8k_A	107	Epidermal growth factor receptor antibody MR1SCFV	99.37
3nl4_L	213	Antigen binding fragment, immunoglobulin IGG - LI;	99.37
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	99.37
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	99.37
4frw_A	218	Poliovirus receptor-related protein 4; immunoglobu	99.37
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	99.37
2eo1_A	102	OBSCN protein, cDNA FLJ14124 FIS, clone mamma10024	99.37
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.37
1mqk_L	120	Antibody 7E2 FV fragment, light chain; membrane pr	99.37
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	99.37
3mj8_L	213	Stimulatory hamster antibody HL4E10 FAB light CHA;	99.36
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	99.36
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	99.36
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	99.35
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	99.35
1i3g_L	111	Antibody FV fragment; antibiotic; 2.44A {Mus muscu	99.35
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	99.35
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	99.35
2coq_A	108	NEW antigen receptor variable domain; IG VNAR, nat	99.35
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	99.35
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	99.34
4fa8_A	203	Secreted protein BARF1; immunoglobulin-like domain	99.34
1qfw_M	108	FV, antibody (anti beta subunit) (light chain); gl	99.34
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.34
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	99.34
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.33
4i0k_A	222	CD276 antigen; immunoglobulin domain, glycoprotein	99.33
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	99.33
4ffy_L	126	DENV1-E111 single chain variable fragment (light;	99.33
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	99.33
1pko_A	139	Myelin oligodendrocyte glycoprotein; IGV-domain, i	99.33
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	99.33
1j05_L	111	T84.66 antibody, anti-CEA MAB T84.66, light chain;	99.32
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	99.32
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	99.32
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.32
3umt_A	256	SCFV heavy chain and light chain; stability engine	99.32
3r06_A	213	Anti-mouse CD3epsilon antibody 2C11 FAB light CHA;	99.32
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	99.32
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	99.31
1h5b_A	113	Murine T cell receptor (TCR) valpha domain; immune	99.31
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	99.31
2yc1_B	146	Single chain antibody fragment 9004G; immune syste	99.3
3mj8_L	213	Stimulatory hamster antibody HL4E10 FAB light CHA;	99.3
4gos_A	125	V-SET domain-containing T-cell activation inhibit;	99.3
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	99.3
1sq2_N	113	Novel antigen receptor; immunoglobulin fold, prote	99.3
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	99.29
1gsm_A	210	Madcam-1, mucosal addressin cell adhesion molecule	99.29
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	99.29
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	99.29
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	99.29
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	99.29
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	99.28
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	99.28
3s96_B	218	3B5H10 FAB light chain; huntingtin, immune system;	99.28
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	99.28
1eeq_A	114	Kappa-4 immunoglobulin (light chain); protein stab	99.28
2vsd_A	105	CHIR AB1; immune system receptor, FC receptor; HET	99.28
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	99.28
3d9a_L	213	Light chain of hyhel10 antibody fragment (FAB); ly	99.28
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	99.28
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	99.28
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	99.27
2ghw_B	247	Anti-SARS SCFV antibody, 80R; S protein, neutraliz	99.27
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	99.27
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	99.27
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	99.27
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	99.26
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	99.26
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	99.26
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	99.26
1dlf_L	113	Anti-dansyl immunoglobulin IGG2A(S); FV fragment;	99.25
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	99.25
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	99.25
3uzq_A	253	Anti-dengue MAB 4E11; dengue antibody neutralizati	99.25
1xau_A	122	B- and T-lymphocyte attenuator; IG domain, beta sa	99.24
3esu_F	250	Antibody 14B7* light chain and antibody 14B7* heav	99.24
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	99.24
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	99.24
2p1y_A	238	Bispecific alpha/beta TCR; autoimmunity, immunoglo	99.24
3juy_B	256	3B3 single chain variant HIV-1 antibody; envelope	99.24
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	99.24
1eaj_A	126	Coxsackie virus and adenovirus receptor; virus/vir	99.24
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	99.23
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	99.23
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	99.23
3auv_A	276	SC-DSFV derived from the G6-FAB; SC-DSFV (disulfid	99.23
1q0x_L	212	FAB 9B1, light chain; anti-morphine antibody, FAB	99.23
2i24_N	121	NEW antigen receptor PBLA8; immunoglobulin fold, i	99.23
3sob_L	237	Antibody light chain; beta propeller, protein bind	99.23
4hwn_A	108	FC receptor-like A; FCRLA, FCRL, IG-C2 domain, IG	99.23
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	99.23
3tv3_L	211	PGT128 light chain, IG lambda-2 chain C regions; F	99.22
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.22
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	99.22
2jju_A	127	Signal regulatory protein beta-1; immunoglobulin d	99.22
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	99.22
2znx_A	242	SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, s	99.22
2c1o_A	254	IGK-C protein; FAB fragment, enantioselective, fin	99.22
3tf7_C	256	42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE;	99.22
1nqb_A	256	Single-chain antibody fragment; multivalent antibo	99.21
3tv3_L	211	PGT128 light chain, IG lambda-2 chain C regions; F	99.21
4dzb_B	246	Vbeta2 (MAIT T cell receptor); immune system; 1.70	99.21
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	99.21
3u6r_L	143	Antibody 1:7 (light chain); IG-like domain, neutra	99.21
1zox_A	113	CLM-1; IG-superfamily, IG-V, NKP44-like, myeloid I	99.21
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	99.2
3omz_A	259	Human vdelta1 gamma delta T cell receptor delta1A;	99.2
1lk3_L	210	9D7 light chain; antigen-antibody complex, immune	99.2
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	99.2
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	99.2
3q0h_A	117	T cell immunoreceptor with IG and ITIM domains; im	99.2
1lk3_L	210	9D7 light chain; antigen-antibody complex, immune	99.2
1f3r_B	257	FV antibody fragment; IG-fold, immuno complex, ant	99.2
1svz_A	247	Immunoglobulin;, single-chain FV fragment 1696; an	99.2
1moe_A	240	Anti-CEA MAB T84.66; anti carcinoembryonic antigen	99.2
1pew_A	109	JTO2, A lambda-6 type immunoglobulin light chain,	99.2
3d9a_L	213	Light chain of hyhel10 antibody fragment (FAB); ly	99.19
3gkz_A	257	Anti-methamphetamine single chain FV; therapeutic	99.19
1tvd_A	116	T cell receptor, ES204 V delta; immunoreceptor, TC	99.19
2rcj_C	523	Light chain; immunoglobulin M, polymeric antibodie	99.19
1oaq_L	120	Light chain; antibody, allergy, IGE, conformationa	99.19
1nkr_A	201	P58-CL42 KIR; inhibitory receptor, natural killer	99.19
1qok_A	282	MFE-23 recombinant antibody fragment; immunoglobul	99.19
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	99.18
3nfj_J	245	T cell receptor beta chain; immunoglobulin family,	99.18
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	99.18
1q0x_L	212	FAB 9B1, light chain; anti-morphine antibody, FAB	99.18
4fom_A	308	Poliovirus receptor-related protein 3; immunoglobu	99.18
3bkj_L	252	WO2 IGG2A FAB fragment light chain kappa; abeta, F	99.18
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	99.18
1p4b_L	135	Antibody variable light chain; FV antibody, antige	99.18
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	99.17
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	99.17
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	99.17
1q9r_B	222	S25-2 FAB (IGG1K) heavy chain; antigen-binding fra	99.17
3kg5_A	134	B-cell antigen receptor complex-associated protei	99.16
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	99.16
3udw_C	118	Poliovirus receptor; PVR tigit IGSF signal transdu	99.16
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	99.16
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	99.16
2otu_A	115	FV light chain variable domain; antibody FV polygl	99.15
2gjj_A	264	A21 single-chain antibody fragment against ERBB2;	99.15
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	99.15
3s96_B	218	3B5H10 FAB light chain; huntingtin, immune system;	99.15
1fo0_A	116	Protein (BM3.3 T cell receptor alpha-chain); class	99.15
1fo0_B	112	Protein (BM3.3 T cell receptor beta-chain); class	99.15
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	99.15
2rgs_A	218	I, IG gamma-2B heavy chain; FC-fragment, immunoglo	99.15
3tf7_C	256	42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE;	99.15
1nez_G	128	T-cell surface glycoprotein CD8 alpha chain; immun	99.14
3t0v_A	123	Immunoglobulin variable lambda domain; immunoglobu	99.14
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	99.14
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	99.14
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	99.14
3rrq_A	129	Protein PD-1, programmed cell death protein 1; pro	99.14
2q87_A	110	CMRF35-H antigen; all-beta, immunoglobulin, IG-sup	99.13
2oyp_A	109	Hepatitis A virus cellular receptor 2; TIM-3, T-ce	99.13
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	99.13
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	99.13
2d9c_A	136	Signal-regulatory protein beta-1; beta-sandwich, S	99.13
1hxm_B	242	Gamma-delta T-cell receptor; IG domain, TCR, GDTCR	99.13
2gki_A	291	Nuclease; anti-DNA antibody, catalytic antibody, i	99.13
2yz1_A	120	Tyrosine-protein phosphatase non-receptor type sub	99.12
1xt5_A	135	Variable region-containing chitin-binding protein	99.12
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	99.12
1nfd_E	212	H57 FAB; complex (immunoreceptor-immunoglobulin),	99.12
3nl4_L	213	Antigen binding fragment, immunoglobulin IGG - LI;	99.12
2xzc_L	216	FAB A.17 light chain; immune system; HET: XOP; 1.3	99.12
1nfd_E	212	H57 FAB; complex (immunoreceptor-immunoglobulin),	99.12
1x9q_A	268	SCFV, 4M5.3 anti-fluorescein single chain antibody	99.12
4ei6_B	245	Vbeta16 XV19 type II natural killer T cell recept	99.12
1pz5_B	220	Heavy chain of FAB (SYA/J6); antibody-antigen stru	99.12
1ncn_A	110	T lymphocyte activation antigen CD86; IG V, beta s	99.11
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	99.11
2fbj_H	220	IGA-kappa J539 FAB (heavy chain); immunoglobulin;	99.11
2c1o_A	254	IGK-C protein; FAB fragment, enantioselective, fin	99.11
2or8_A	116	Hepatitis A virus cellular receptor 1 homolog; bet	99.11
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	99.11
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	99.1
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	99.1
2p1y_A	238	Bispecific alpha/beta TCR; autoimmunity, immunoglo	99.1
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	99.1
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	99.1
3bqu_C	233	3H6 FAB light chain; beta sheet, immune system; 3.	99.1
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	99.1
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	99.1
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	99.09
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	99.09
2z35_A	112	T-cell receptor alpha-chain; immune receptor, immu	99.09
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	99.09
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	99.09
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	99.09
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	99.09
3ux9_B	256	SCFV antibody; five helices, long loop connecting	99.09
3d9a_H	210	Heavy chain of hyhel10 antibody fragment (FAB); ly	99.09
3bp6_A	117	Programmed cell death protein 1; PD-1, PD-L2, comp	99.09
3juy_B	256	3B3 single chain variant HIV-1 antibody; envelope	99.08
1c1e_H	219	Catalytic antibody 1E9 (heavy chain); diels-alder,	99.08
2qhl_A	111	Novel immune-type receptor 10; immunoglobulin vari	99.08
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	99.08
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	99.08
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	99.08
2wbj_D	279	OB TCR; transmembrane, immune response, T cell rec	99.08
2j6e_L	234	IGM, FAB light chain; autoimmune complex human IGM	99.08
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	99.08
3sob_L	237	Antibody light chain; beta propeller, protein bind	99.07
2ghw_B	247	Anti-SARS SCFV antibody, 80R; S protein, neutraliz	99.07
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	99.07
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	99.07
1nkr_A	201	P58-CL42 KIR; inhibitory receptor, natural killer	99.07
3bj9_1	116	Immunoglobulin IOTA chain, immunoglobulin lambda-	99.07
1qok_A	282	MFE-23 recombinant antibody fragment; immunoglobul	99.07
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	99.07
3esu_F	250	Antibody 14B7* light chain and antibody 14B7* heav	99.06
4gjt_B	123	Poliovirus receptor-related protein 4; six-bladed	99.06
1u3h_A	110	T-cell receptor alpha-chain; complex, immune syste	98.64
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	99.06
1f3r_B	257	FV antibody fragment; IG-fold, immuno complex, ant	99.06
3r08_E	82	T-cell surface glycoprotein CD3 epsilon chain; ant	99.06
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	99.06
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	99.06
2rcj_C	523	Light chain; immunoglobulin M, polymeric antibodie	99.06
3pv7_A	248	B7-H6, IG-like domain-containing protein DKFZP686O	99.06
1svz_A	247	Immunoglobulin;, single-chain FV fragment 1696; an	99.05
2qsq_A	111	Carcinoembryonic antigen-related cell adhesion MO;	99.05
2hp4_A	114	T-cell surface glycoprotein CD8 alpha chain; CO-re	99.05
1i1c_A	239	IGG2A, IG gamma-2A chain C region; FC, immune syst	99.05
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	99.05
1c1e_H	219	Catalytic antibody 1E9 (heavy chain); diels-alder,	99.05
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	99.05
3pv7_A	248	B7-H6, IG-like domain-containing protein DKFZP686O	99.05
3r0n_A	128	Poliovirus receptor-related protein 2; IG-domain,	99.05
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	99.04
2atp_B	115	T-cell surface glycoprotein CD8 beta chain; CD8AB,	99.04
3auv_A	276	SC-DSFV derived from the G6-FAB; SC-DSFV (disulfid	99.04
1u9k_A	114	Triggering receptor expressed on myeloid cells 1;	99.04
3r06_A	213	Anti-mouse CD3epsilon antibody 2C11 FAB light CHA;	99.04
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	99.04
3gkz_A	257	Anti-methamphetamine single chain FV; therapeutic	99.04
3dmm_D	150	T-cell surface glycoprotein CD8 beta chain; T cell	99.03
2eys_A	210	NKT15; natural killer T cell receptor, immune syst	99.03
3ux9_B	256	SCFV antibody; five helices, long loop connecting	99.02
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	99.02
2znx_A	242	SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, s	99.02
2xzc_L	216	FAB A.17 light chain; immune system; HET: XOP; 1.3	99.02
1nqb_A	256	Single-chain antibody fragment; multivalent antibo	99.02
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	99.02
1dee_B	223	IGM RF 2A2; FAB-IBP complex 2.7A resolution bindin	99.02
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	99.02
3r8b_B	125	G5-8, enterotoxin type B; immunoglobulin-like, OB-	99.02
2ptt_A	110	CD48 antigen; CD244, CD48, NK cell receptor, X-RAY	99.01
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	99.01
2w59_A	231	IGY FCU3-4; immunoglobulin, avian, immune system;	99.0
1za6_B	344	IGG heavy chain; immunoglobulin fold, CH2-domain-d	99.0
3bqu_C	233	3H6 FAB light chain; beta sheet, immune system; 3.	99.0
2oi9_C	121	V beta, T cell receptor beta chain; TCR, MHC, immu	99.0
1neu_A	124	Myelin P0 protein; structural protein, glycoprotei	99.0
3fku_X	280	Neutralizing antibody F10; influenza, hemagglutini	99.0
3bik_B	134	Programmed cell death protein 1; CO-stimulation, r	99.0
2vol_A	207	Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry,	99.0
1ypz_E	207	T cell receptor delta, beta-2-microglobulin; H2-T2	98.99
2aw2_A	120	B and T lymphocyte attenuator; IGI domain, IGG dom	98.99
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	98.99
1qgc_4	438	Protein (immunoglobulin); virus-antibody complex,	98.99
1op3_H	225	FAB 2G12, heavy chain; domain-swapped FAB 2G12, an	98.99
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	98.99
1b6u_A	257	KIR2DL3, P58 killer cell inhibitory receptor; natu	98.99
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	98.99
1hkf_A	122	NKP44, NK cell activating receptor; natural cytoto	98.99
1qgc_4	438	Protein (immunoglobulin); virus-antibody complex,	98.98
4fmk_A	225	Poliovirus receptor-related protein 2; immunoglobu	98.98
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	98.98
2j6e_L	234	IGM, FAB light chain; autoimmune complex human IGM	98.98
1nko_A	132	Sialic acid binding IG-like lectin 7; immunoglobul	98.98
3pl6_D	268	MBP peptide / T-cell receptor beta chain chimera;	98.98
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	98.98
3uzq_A	253	Anti-dengue MAB 4E11; dengue antibody neutralizati	98.98
3q5y_A	240	TCR N15 beta; IG, T cell receptor, antigen peptide	98.98
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	98.97
1kxv_C	121	Camelid VHH domain CAB10; beta 8 alpha 8, beta bar	98.97
1moe_A	240	Anti-CEA MAB T84.66; anti carcinoembryonic antigen	98.97
2h32_A	126	Immunoglobulin IOTA chain; beta sheets, V and C-ty	98.97
3bkj_L	252	WO2 IGG2A FAB fragment light chain kappa; abeta, F	98.97
2gjj_A	264	A21 single-chain antibody fragment against ERBB2;	98.97
2xqy_G	261	A13-D6.3 monoclonal antibody, envelope glycoprotei	98.97
1mju_H	227	Immunoglobulin MS6-12; catalytic antibody, ester h	98.97
3umt_A	256	SCFV heavy chain and light chain; stability engine	98.97
3b9v_A	120	Heavy chain variable domain; antibody engineering,	98.96
1n4x_H	120	Immunoglobulin heavy chain variable region; immune	98.96
3bae_H	228	WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO	98.96
1lp9_E	194	T-cell receptor alpha chain; immunoregulatory comp	98.96
2q86_A	229	Valpha14 TCR; INKT cells, TCR, glycolipid recognit	98.96
1igt_B	444	IGG2A intact antibody - MAB231; intact immunoglobu	98.96
3d9a_H	210	Heavy chain of hyhel10 antibody fragment (FAB); ly	98.96
2or7_A	115	T-cell immunoglobulin and mucin domain- containing	98.96
3omz_A	259	Human vdelta1 gamma delta T cell receptor delta1A;	98.95
1j05_H	121	T84.66 antibody, anti-CEA MAB T84.66, heavy chain;	98.95
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	98.95
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	98.95
3nl4_H	215	Antigen binding fragment,immunoglobulin IGG - HEA;	98.95
1yc7_A	124	Anti-VSG immunoglobulin heavy chain variable domai	98.95
2bnu_A	203	TCR alpha chain, T-cell receptor alpha chain C reg	98.95
1hxm_A	229	Gamma-delta T-cell receptor; IG domain, TCR, GDTCR	98.95
1a2y_B	116	IGG1-kappa D1.3 FV (heavy chain); complex (immunog	98.95
2nms_A	124	CMRF35-like-molecule 1; IG-superfamily, IG-V, NKP4	98.95
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	98.94
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	98.94
1mju_H	227	Immunoglobulin MS6-12; catalytic antibody, ester h	98.94
4fmk_A	225	Poliovirus receptor-related protein 2; immunoglobu	98.93
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	98.93
1ypz_F	230	T-cell receptor gamma chain, beta-2-microglobulin;	98.93
2vol_A	207	Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry,	98.93
1q9r_B	222	S25-2 FAB (IGG1K) heavy chain; antigen-binding fra	98.93
2yc1_A	117	Single chain antibody fragment 9004G; immune syste	98.93
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	98.93
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	98.93
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	98.93
3dmm_C	166	T-cell surface glycoprotein CD8 alpha chain; T cel	98.93
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	98.93
1pz5_B	220	Heavy chain of FAB (SYA/J6); antibody-antigen stru	98.92
1bec_A	238	14.3.D T cell antigen receptor; T cell receptor; 1	98.92
2fbj_H	220	IGA-kappa J539 FAB (heavy chain); immunoglobulin;	98.92
2xt1_B	121	Camelid VHH 9; viral protein-immune system complex	98.92
1dee_B	223	IGM RF 2A2; FAB-IBP complex 2.7A resolution bindin	98.92
3qib_D	270	2B4 beta chain; IG domain, immune system; HET: NAG	98.92
1dn0_B	232	IGM-kappa cold agglutinin (heavy chain); FAB, anti	98.91
3qjh_A	205	5C.C7 alpha chain; immunoglobulin domain, T cell r	98.91
3bae_H	228	WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO	98.91
1op3_H	225	FAB 2G12, heavy chain; domain-swapped FAB 2G12, an	98.91
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	98.91
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	98.91
3noi_A	120	Natural cytotoxicity triggering receptor 3; immune	98.91
3liz_H	253	4C3 monoclonal antibody heavy chain; hydrolase-imm	98.91
2wqr_A	323	IG epsilon chain C region; immune system, immunogl	98.9
2gki_A	291	Nuclease; anti-DNA antibody, catalytic antibody, i	98.9
3mbe_C	229	I-AG7; T cell receptor, histocompatability antigen	98.9
2rgs_A	218	I, IG gamma-2B heavy chain; FC-fragment, immunoglo	98.89
3fku_X	280	Neutralizing antibody F10; influenza, hemagglutini	98.89
2p45_B	123	Antibody CAB-RN05; seMet phasing, camelid single-d	98.89
1dlf_H	124	Anti-dansyl immunoglobulin IGG2A(S); FV fragment;	98.89
3bn9_D	257	E2 FAB heavy chain; antibody-protease complex, pro	98.89
1mfa_H	120	IGG1-lambda Se155-4 FAB (heavy chain); immunoglobu	98.88
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	98.88
1zvh_A	134	Immunoglobulin heavy chain antibody variable domai	98.88
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	98.88
2wqr_A	323	IG epsilon chain C region; immune system, immunogl	98.88
2ak4_D	211	SB27 T cell receptor alpha chain; bulged epitopes,	98.87
1l6x_A	207	Immunoglobulin gamma-1 heavy chain constant regio;	98.87
3kgr_A	106	LAIR-1, hlair1, leukocyte-associated immunoglobuli	98.87
1i3u_A	127	Antibody VHH LAMA domain; VHH fragment, immune sys	98.87
3to4_D	253	NKT vbeta2 (mouse variable domain, human constant;	98.87
3lh2_H	137	FV 4E10 heavy chain; epitope-scaffold, immune syst	98.87
1dqt_A	117	CTLA4, cytotoxic T lymphocyte associated antigen 4	98.87
3tjh_C	226	42F3 alpha; IG MHC, antigen recognition, TCR-PMHC,	98.87
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	98.87
1x9q_A	268	SCFV, 4M5.3 anti-fluorescein single chain antibody	98.87
1n26_A	325	IL-6 receptor alpha chain; transmembrane, glycopro	98.86
1b6u_A	257	KIR2DL3, P58 killer cell inhibitory receptor; natu	98.86
1xed_A	117	Polymeric-immunoglobulin receptor; IG-like fold, i	98.85
2wzp_D	123	Camelid VHH5; baseplate, viral protein; 2.60A {Lam	98.85
4frw_A	218	Poliovirus receptor-related protein 4; immunoglobu	98.85
1c5d_H	215	Monoclonal antibody against the main immunogenic t	98.85
3rgv_A	200	YAE62 TCR A chain; TCR, MHC, MHC class I, immune s	98.85
4ei6_A	208	Valpha1 XV19 type II natural killer T cell recept	98.84
3o3u_N	581	Maltose-binding periplasmic protein, advanced Gly	98.84
1hzh_H	457	IGG, immunoglobulin heavy chain; antibody, immune	98.84
3m8o_H	221	Immunoglobulin A1 heavy chain; immunoglobulin fold	98.84
4fqp_A	313	Poliovirus receptor; immunoglobulin-like domain, I	98.84

>3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*

Probab=99.82  E-value=4.9e-19  Score=81.56  Aligned_cols=90  Identities=18%  Similarity=0.256  Sum_probs=71.0

Q ss_pred             CCeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEe-cccceEEEEeccccceEEEEEEEccCCCCCCeeEE
Q psy4613           1 HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVI-SSERYEVESISRSIFDFKMRLTIKKITKYDLGSYK   79 (96)
Q Consensus         1 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~   79 (96)
                      ||.+...+..+.+..|+.+.|.|.+.+.|.|.+.|++++..+.. ...++.+....     ....|.|.++...|.|.|.
T Consensus         5 PP~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~g~~i~~~~~~~~~~~~~~-----~~~~L~I~~~~~~D~G~Y~   79 (100)
T 3knb_A            5 PPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTD-----DLTTLIIMDVQKQDGGLYT   79 (100)
T ss_dssp             EEEECCCCSEEEEETTSEEEEEEEEEEESCCEEEEEETTEECCTTGGGTEEEEECS-----SEEEEEESSCCGGGCEEEE
T ss_pred             CCEEEeCCCcEEEeCCCeEEEEEEEEEecCCEEEEEECceEeeeeccceeeeeccc-----ceEEEEEcCCCccCCEEEE
Confidence            36666677788899999999999999999999999998766542 22344443321     2467999999999999999


Q ss_pred             EEEecCCCceEEEEEe
Q psy4613          80 CIAKNSLGEVESSIRL   95 (96)
Q Consensus        80 c~~~~~~g~~~~~~~l   95 (96)
                      |.+.|..|.....+.|
T Consensus        80 C~a~N~~G~~~~~~~l   95 (100)
T 3knb_A           80 LSLGNEFGSDSATVNI   95 (100)
T ss_dssp             EEEEETTEEEEEEEEE
T ss_pred             EEEEECCCEEEEEEEE
Confidence            9999999988777665

>3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O

Probab=99.82  E-value=4.7e-19  Score=82.53  Aligned_cols=89  Identities=21%  Similarity=0.331  Sum_probs=70.7

Q ss_pred             CCeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEE
Q psy4613           1 HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKC   80 (96)
Q Consensus         1 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c   80 (96)
                      +|.+...+..+.+..|+.+.|.|.+.|.|.|.+.|++++..+. ...++.+....     ....|.|.++...|.|.|.|
T Consensus        13 pP~f~~~p~~~~v~~G~~~~l~C~~~G~P~p~v~W~k~g~~l~-~~~~~~~~~~~-----~~~~L~I~~v~~~D~G~Y~C   86 (107)
T 3knb_B           13 PPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLA-ASERLSFPADG-----AEHGLLLTAALPTDAGVYVC   86 (107)
T ss_dssp             EEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECC-CCSSEECCEET-----TEEEEEESSCCGGGCEEEEE
T ss_pred             CCEEEeCCCcEEEeCCCcEEEEEEEEEecCCEEEEEECccccc-ceeeEEEeecC-----ceEEEEEecCChhhCEEEEE
Confidence            3667777777889999999999999999999999999876553 33444433211     24679999999999999999


Q ss_pred             EEecCCCceEEEEEe
Q psy4613          81 IAKNSLGEVESSIRL   95 (96)
Q Consensus        81 ~~~~~~g~~~~~~~l   95 (96)
                      .+.|..|.....+.|
T Consensus        87 ~a~N~~G~~~~~~~l  101 (107)
T 3knb_B           87 RARNAAGEAYAAAAV  101 (107)
T ss_dssp             EEEETTEEEEEEEEE
T ss_pred             EEEECCCEEEEEEEE
Confidence            999999987776654

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens}

Probab=99.78  E-value=1.3e-17  Score=76.39  Aligned_cols=90  Identities=26%  Similarity=0.352  Sum_probs=68.9

Q ss_pred             CCeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEE
Q psy4613           1 HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKC   80 (96)
Q Consensus         1 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c   80 (96)
                      +|.+...+....+..|..+.|.|.+.+.|.+.+.|++++..+.....++......     ....|.|.++...|.|.|.|
T Consensus         5 ~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~-----~~~~L~i~~~~~~D~G~Y~C   79 (99)
T 1u2h_A            5 PPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEG-----GLCRLRILAAERGDAGFYTC   79 (99)
T ss_dssp             EEEEEECCCCEEEETTCCEEEEEEEEEESCCEEEEEETTEECCCBTTEEEEECGG-----GEEEEEESSCCGGGCEEEEE
T ss_pred             CCEEEEcCCceEecCCCEEEEEEEEEEcCCCEEEEEECCEECCCCCCEEEEECCC-----CEEEEEEccCCcCCCEEEEE
Confidence            3667777777889999999999999999999999999876554222222221111     23579999999999999999


Q ss_pred             EEecCCCceEEEEEe
Q psy4613          81 IAKNSLGEVESSIRL   95 (96)
Q Consensus        81 ~~~~~~g~~~~~~~l   95 (96)
                      .+.|..|.....+.|
T Consensus        80 ~a~N~~g~~~~~~~l   94 (99)
T 1u2h_A           80 KAVNEYGARQCEARL   94 (99)
T ss_dssp             EEEETTEEEEEEEEE
T ss_pred             EEEECCCceeEEEEE
Confidence            999999987766654

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens}

Probab=99.77  E-value=3.6e-17  Score=75.42  Aligned_cols=89  Identities=19%  Similarity=0.270  Sum_probs=69.6

Q ss_pred             CCeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEE
Q psy4613           1 HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKC   80 (96)
Q Consensus         1 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c   80 (96)
                      +|.+...+....+..|+.+.|.|.+.+.|.|.+.|++++..+. ...++......     ....|.|.++...|.|.|.|
T Consensus         8 ~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~~~~~~-~~~~~~~~~~~-----~~~~L~i~~~~~~D~G~Y~C   81 (103)
T 3qp3_A            8 APRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQ-ESSKIHYTNTS-----GVLTLEILDCHTDDSGTYRA   81 (103)
T ss_dssp             EEEEEECCCCEEEETTCCEEEEEEEEEESCCEEEEEETTEECC-CCSSEEEEEET-----TEEEEEECSCCGGGCEEEEE
T ss_pred             CCEEEeCCcceEEeCCCeEEEEEEEEecCCCEEEEEECCEECC-CCCCEEEEECC-----CEEEEEEcCCCcccCEEEEE
Confidence            3666677777889999999999999999999999999875553 33444433211     23579999999999999999


Q ss_pred             EEecCCCceEEEEEe
Q psy4613          81 IAKNSLGEVESSIRL   95 (96)
Q Consensus        81 ~~~~~~g~~~~~~~l   95 (96)
                      .+.|..|.......|
T Consensus        82 ~a~N~~G~~~~~~~l   96 (103)
T 3qp3_A           82 VCTNYKGEASDYATL   96 (103)
T ss_dssp             EEEETTEEEEEEEEE
T ss_pred             EEEeCCCcEEEEEEE
Confidence            999999987766654

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4

Probab=99.77  E-value=3.6e-17  Score=74.92  Aligned_cols=90  Identities=22%  Similarity=0.142  Sum_probs=68.9

Q ss_pred             CCeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEE
Q psy4613           1 HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKC   80 (96)
Q Consensus         1 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c   80 (96)
                      +|.+...+....+..|+.+.|.|.+.+.|.+.+.|++++..+. ...+........    ....|.|.++...|.|.|.|
T Consensus         5 ~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~~~-~~~~~~~~~~~~----~~~~L~i~~v~~~D~G~Y~C   79 (99)
T 1g1c_A            5 APKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIE-RSDRIYWYWPED----NVCELVIRDVTGEDSASIMV   79 (99)
T ss_dssp             EEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECC-CCSSEEEEEEET----TEEEEEECSCCGGGCEEEEE
T ss_pred             CCceEecCcceEEcCCCcEEEEEEEEEeCCCEEEEEECCEECC-CCCCEEEEEcCC----CEEEEEECCCCcCCCEEEEE
Confidence            3666667777889999999999999999999999999876553 223332221110    24579999999999999999


Q ss_pred             EEecCCCceEEEEEe
Q psy4613          81 IAKNSLGEVESSIRL   95 (96)
Q Consensus        81 ~~~~~~g~~~~~~~l   95 (96)
                      .+.|..|.....+.|
T Consensus        80 ~a~N~~g~~~~~~~l   94 (99)
T 1g1c_A           80 KAINIAGETSSHAFL   94 (99)
T ss_dssp             EEEETTEEEEEEEEE
T ss_pred             EEEECCCcEEEEEEE
Confidence            999999987776654

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.77  E-value=4e-17  Score=76.59  Aligned_cols=89  Identities=21%  Similarity=0.230  Sum_probs=69.3

Q ss_pred             CCeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEE
Q psy4613           1 HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKC   80 (96)
Q Consensus         1 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c   80 (96)
                      +|.+...+..+.+..|+.+.|.|.+.+.|.+.+.|++++..+. ...++.+....     ....|.|.++...|.|.|.|
T Consensus         7 pp~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~~~~~~-~~~~~~~~~~~-----~~~~L~I~~v~~~D~G~Y~C   80 (114)
T 2cqv_A            7 GPQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQ-ESEHMKVENSE-----NGSKLTILAARQEHCGCYTL   80 (114)
T ss_dssp             CCEESCCCCSEEEETTCCEEEEEEEESSSSCEEEEEESSSBCC-CSSSEEEEECS-----SEEEEEETTCCTTTCEEEEE
T ss_pred             CCEEEeCCCCeEEeCCCeEEEEEEEEcCCCCEEEEEECCEECc-CCCCEEEEEcC-----CEEEEEECCCChhcCEEEEE
Confidence            4667667777889999999999999999999999999876553 33444443211     24689999999999999999


Q ss_pred             EEecCCCceEEEEEe
Q psy4613          81 IAKNSLGEVESSIRL   95 (96)
Q Consensus        81 ~~~~~~g~~~~~~~l   95 (96)
                      .+.|..|.....+.|
T Consensus        81 ~a~N~~g~~~~~~~l   95 (114)
T 2cqv_A           81 LVENKLGSRQAQVNL   95 (114)
T ss_dssp             EEECSSCEEECCEEE
T ss_pred             EEEECCCcEEEEEEE
Confidence            999999876555443

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A

Probab=99.77  E-value=1.2e-17  Score=75.83  Aligned_cols=87  Identities=21%  Similarity=0.269  Sum_probs=68.5

Q ss_pred             CCeEEecCceeeecCCCcEEEEEEeeecccceeEEeecc--ceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeE
Q psy4613           1 HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQ--GDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSY   78 (96)
Q Consensus         1 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y   78 (96)
                      +|.+..++..+.+..|+.+.|.|.+.+.|.|.+.|++++  ..+. ...  ......     ....|.|.++...|.|.|
T Consensus         2 ~P~i~~~~~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~~~~~~~~-~~~--~~~~~~-----~~~~L~i~~~~~~D~G~Y   73 (93)
T 1wit_A            2 KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALA-PEL--LVDAKS-----STTSIFFPSAKRADSGNY   73 (93)
T ss_dssp             CCEECCCCCEEEECTTBCCEEEEEEECCSSCEEEEECSTTTCBCS-TTS--EEEEET-----TEEEEECTTBCGGGCEEE
T ss_pred             CCeEEcCCCceEEeCCCEEEEEEEEEEcCCCEEEEEECCCCcccC-CcE--EEEecC-----CEEEEEECCCChhcCEEE
Confidence            577777778888999999999999999999999999987  4432 111  111111     246799999999999999


Q ss_pred             EEEEecCCCceEEEEEe
Q psy4613          79 KCIAKNSLGEVESSIRL   95 (96)
Q Consensus        79 ~c~~~~~~g~~~~~~~l   95 (96)
                      .|.+.|..|.....+.|
T Consensus        74 ~C~a~N~~G~~~~~~~l   90 (93)
T 1wit_A           74 KLKVKNELGEDEAIFEV   90 (93)
T ss_dssp             EEEEEETTEEEEEEEEE
T ss_pred             EEEEEcCCCeEEEEEEE
Confidence            99999999988777655

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens}

Probab=99.76  E-value=9.3e-17  Score=73.50  Aligned_cols=88  Identities=27%  Similarity=0.390  Sum_probs=69.1

Q ss_pred             CeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEE
Q psy4613           2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCI   81 (96)
Q Consensus         2 p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~   81 (96)
                      |.+...+....+..|+.+.|.|.+.+.|.+.+.|++++..+. ...++......     ....|.|.++...|.|.|.|.
T Consensus         7 P~i~~~~~~~~v~~G~~~~l~C~~~g~p~p~v~W~~~g~~~~-~~~~~~~~~~~-----~~~~L~i~~~~~~d~G~Y~C~   80 (99)
T 3puc_A            7 PVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAIT-QGGKYKLSEDK-----GGFFLEIHKTDTSDSGLYTCT   80 (99)
T ss_dssp             EEEEECCCCEEEESSSCEEEEEEEEEESCCEEEEEETTEECC-SSSSEEEEEET-----TEEEEEECSCCGGGCEEEEEE
T ss_pred             CEEEecCccEEEeCCCcEEEEEEEEecCCCEEEEEECCEECc-CCCCEEEEEeC-----CEEEEEECCCCcccCEEEEEE
Confidence            566667777889999999999999999999999999865543 33454443311     235799999999999999999


Q ss_pred             EecCCCceEEEEEe
Q psy4613          82 AKNSLGEVESSIRL   95 (96)
Q Consensus        82 ~~~~~g~~~~~~~l   95 (96)
                      +.|..|.....+.|
T Consensus        81 a~n~~g~~~~~~~l   94 (99)
T 3puc_A           81 VKNSAGSVSSSCKL   94 (99)
T ss_dssp             EEETTEEEEEEEEE
T ss_pred             EEeCCCcEeEEEEE
Confidence            99999987766654

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.75  E-value=4.5e-17  Score=74.73  Aligned_cols=89  Identities=17%  Similarity=0.221  Sum_probs=66.3

Q ss_pred             CeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEE
Q psy4613           2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCI   81 (96)
Q Consensus         2 p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~   81 (96)
                      |.+...+..+.+..|+.+.|.|.+.+.|.+.+.|++++..+... .+....... .   ....|.|.++...|.|.|.|.
T Consensus         6 P~~~~~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~g~~~~~~-~~~~~~~~~-~---~~~~L~i~~v~~~D~G~Y~C~   80 (100)
T 2kdg_A            6 PRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSD-DLHKMIVSE-K---GLHSLIFEVVRASDAGAYACV   80 (100)
T ss_dssp             EECCCCCCCEEEETTCCEEEEEECEEESCCEEEEEETTEEECCC-SSSCEEEET-T---TEEEEEESSCCGGGCEEEEEE
T ss_pred             CeEEeCCCCEEecCCCEEEEEEEEEeeCCCEEEEEECCEECcCC-CcEEEEEcC-C---CeEEEEECCCCcccCEEEEEE
Confidence            55555666778899999999999999999999999987655322 221111111 0   225799999999999999999


Q ss_pred             EecCCCceEEEEEe
Q psy4613          82 AKNSLGEVESSIRL   95 (96)
Q Consensus        82 ~~~~~g~~~~~~~l   95 (96)
                      +.|..|.....+.|
T Consensus        81 a~n~~g~~~~~~~l   94 (100)
T 2kdg_A           81 AKNRAGEATFTVQL   94 (100)
T ss_dssp             EEETTEEEEEEEEE
T ss_pred             EEcCCCeEEEEEEE
Confidence            99999987766654

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens}

Probab=99.73  E-value=8.5e-16  Score=70.13  Aligned_cols=87  Identities=26%  Similarity=0.345  Sum_probs=67.9

Q ss_pred             eEEecCceeeecCCCcEEEEEEeeec-ccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEE
Q psy4613           3 VIHVPNQLVGAPIDTDVTLECYVEAY-PKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCI   81 (96)
Q Consensus         3 ~~~~~~~~~~~~~g~~~~l~c~~~~~-~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~   81 (96)
                      .+..++..+.+..|+.+.|.|.+.+. |.+.+.|++++..+. ...++.+....     ....|.|.++...|.|.|.|.
T Consensus         3 ~v~~~~~~~~v~~G~~v~l~C~~~g~~p~~~v~W~~~~~~~~-~~~~~~~~~~~-----~~~~L~i~~v~~~D~G~Y~C~   76 (97)
T 2bk8_A            3 MVSGQIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLE-NSEKYEITYED-----GVAILYVKDITKLDDGTYRCK   76 (97)
T ss_dssp             CEECCCCCEEECTTCCEEEEEEEESCCTTCEEEEEETTEECC-SSSSEEEEEET-----TEEEEEECSCCGGGCEEEEEE
T ss_pred             ceeccCcCEEEcCCCcEEEEEEEeccCCCCEEEEEECCEECc-CCCCEEEEEcC-----CeEEEEEecCChhhCeEEEEE
Confidence            45566777889999999999999997 889999999865543 33454443211     235799999999999999999


Q ss_pred             EecCCCceEEEEEe
Q psy4613          82 AKNSLGEVESSIRL   95 (96)
Q Consensus        82 ~~~~~g~~~~~~~l   95 (96)
                      +.|..|.......|
T Consensus        77 a~n~~g~~~~~~~l   90 (97)
T 2bk8_A           77 VVNDYGEDSSYAEL   90 (97)
T ss_dssp             EECSSCEEEEEEEE
T ss_pred             EECCCCeEeEEEEE
Confidence            99999987776654

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A

Probab=99.73  E-value=5.6e-17  Score=75.33  Aligned_cols=89  Identities=20%  Similarity=0.340  Sum_probs=69.7

Q ss_pred             CCeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEE
Q psy4613           1 HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKC   80 (96)
Q Consensus         1 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c   80 (96)
                      +|.+...+..+.+..|+.+.|.|.+.+.|.+.+.|++++..+. ...++.+....     ....|.|.++...|.|.|.|
T Consensus        14 ~~~i~~~p~~~~v~~G~~v~L~C~~~g~p~p~v~W~k~g~~l~-~~~~~~~~~~~-----~~~~L~I~~v~~~D~G~Y~C   87 (106)
T 1nct_A           14 AARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLS-TSARHQVTTTK-----YKSTFEISSVQASDEGNYSV   87 (106)
T ss_dssp             CCEEEECCCCEEESSSSCEECCEEEECSSCCBCCBCSSSSCCT-TCSSEEEEECS-----SEEEEEECCCCSSCCSEEEE
T ss_pred             CCEEEECCCCEEEeCCCcEEEEEEEEEcCCCEEEEEECCEECC-CCCCEEEEECC-----CEEEEEECcCCchhCEEEEE
Confidence            3667777788889999999999999999999999999865543 33444433211     24689999999999999999


Q ss_pred             EEecCCCceEEEEEe
Q psy4613          81 IAKNSLGEVESSIRL   95 (96)
Q Consensus        81 ~~~~~~g~~~~~~~l   95 (96)
                      .+.|..|.....+.|
T Consensus        88 ~a~N~~G~~~~~~~l  102 (106)
T 1nct_A           88 VVENSEGKQEAEFTL  102 (106)
T ss_dssp             CCBCSSCBCCEEEEE
T ss_pred             EEEeCCCeEEEEEEE
Confidence            999999987666554

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.73  E-value=4e-17  Score=74.81  Aligned_cols=86  Identities=24%  Similarity=0.365  Sum_probs=66.3

Q ss_pred             CCeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEE
Q psy4613           1 HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKC   80 (96)
Q Consensus         1 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c   80 (96)
                      +|.+...+....+..|+.+.|.|.+.+.|.|.+.|++++..+...  ......       ....|.|.++...|.|.|.|
T Consensus        11 ~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~g~~~~~~--~~~~~~-------~~~~L~i~~v~~~D~G~Y~C   81 (99)
T 2yr3_A           11 APSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYA--RSTCEA-------GVAELHIQDALPEDHGTYTC   81 (99)
T ss_dssp             EEEEEECCCCEEECTTCCEEEECEEEEESCCCCEEEESSSBCSSC--CCEEET-------TEEEEEECSCCTTCCBCEEE
T ss_pred             CCceeecCCCCEEeCCCeEEEEEEEeeeCCCeEEEEECCEECccc--ceEeeC-------CeEEEEECCCChhhCEEEEE
Confidence            356666677788999999999999999999999999986554311  111111       24679999999999999999


Q ss_pred             EEecCCCceEEEEEe
Q psy4613          81 IAKNSLGEVESSIRL   95 (96)
Q Consensus        81 ~~~~~~g~~~~~~~l   95 (96)
                      .+.|..|.....+.|
T Consensus        82 ~a~N~~g~~~~~~~l   96 (99)
T 2yr3_A           82 LAENALGQVSCSAWV   96 (99)
T ss_dssp             EEECSSCEEEEECCE
T ss_pred             EEEECCCeEEEEEEE
Confidence            999999987665443

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.73  E-value=8.8e-17  Score=74.96  Aligned_cols=89  Identities=22%  Similarity=0.313  Sum_probs=67.6

Q ss_pred             CCeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEE
Q psy4613           1 HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKC   80 (96)
Q Consensus         1 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c   80 (96)
                      +|.+...+..+.+..|+.+.|.|.+.+.|.+.+.|++++..+.....++.+.... .   ....|.|.++...|.|.|.|
T Consensus         8 ~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~~~~~-~---~~~~L~i~~v~~~D~G~Y~C   83 (110)
T 2dm2_A            8 APFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDL-D---GTCSLHTTASTLDDDGNYTI   83 (110)
T ss_dssp             CCCBSSCCCCEEEETTCCEEEEEEBCCSSCCEEEEECSSCBCCTTCSSEEEEECT-T---CEEEEEESSCCTTTCSCCEE
T ss_pred             CCEEEecCcCeEEeCCCeEEEEEEEEecCCCEEEEEECCEECCCCCCeEEEEECC-C---cEEEEEECCCChhhCEEEEE
Confidence            3556566677788999999999999999999999999876554333455443321 0   23579999999999999999


Q ss_pred             EEecCCCceEEEE
Q psy4613          81 IAKNSLGEVESSI   93 (96)
Q Consensus        81 ~~~~~~g~~~~~~   93 (96)
                      .+.|..|.....+
T Consensus        84 ~a~N~~g~~~~~~   96 (110)
T 2dm2_A           84 MAANPQGRISCTG   96 (110)
T ss_dssp             EEECTTCCEEECC
T ss_pred             EEEECCCeEEEEE
Confidence            9999998765544

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.72  E-value=1.3e-16  Score=75.18  Aligned_cols=90  Identities=26%  Similarity=0.369  Sum_probs=69.0

Q ss_pred             CeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEE
Q psy4613           2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCI   81 (96)
Q Consensus         2 p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~   81 (96)
                      |.+...+..+.+..|+.+.|.|.+.+.|.+.+.|++++..+.....++.......    ....|.|.++...|.|.|.|.
T Consensus        16 p~f~~~p~~~~v~~G~~v~L~C~~~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~----~~~~L~I~~v~~~D~G~Y~C~   91 (116)
T 2kkq_A           16 PMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNT----GRVTLLIKDVNKKDAGWYTVS   91 (116)
T ss_dssp             CCBSSCCCCEEEETTEEEEEEEEBCCBSCCEEEEEETTEECCCCBTTEEEEECTT----CEEEEEEEEECGGGCEEEEEE
T ss_pred             CeEEeCCCcEEEeCCCcEEEEEEEeccCCCEEEEEECCEECcCCCCeEEEEeCCC----CeEEEEECCCCcccCEEEEEE
Confidence            4555666778899999999999999999999999998765543334554433111    234799999999999999999


Q ss_pred             EecCCCceEEEEEe
Q psy4613          82 AKNSLGEVESSIRL   95 (96)
Q Consensus        82 ~~~~~g~~~~~~~l   95 (96)
                      +.|..|.....+.|
T Consensus        92 a~N~~G~~~~~~~l  105 (116)
T 2kkq_A           92 AVNEAGVTTCNTRL  105 (116)
T ss_dssp             EEETTEEEEEEEEE
T ss_pred             EEcCCCeEEEEEEE
Confidence            99999987666554

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.72  E-value=3e-17  Score=75.35  Aligned_cols=87  Identities=24%  Similarity=0.358  Sum_probs=67.0

Q ss_pred             CCeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEE
Q psy4613           1 HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKC   80 (96)
Q Consensus         1 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c   80 (96)
                      +|.+...+....+..|+.+.|.|.+.+.|.+.+.|++++..+.....++...        ....|.|.++...|.|.|.|
T Consensus         8 ~P~i~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~--------~~~~L~i~~v~~~d~G~Y~C   79 (100)
T 2edj_A            8 PPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQ--------EQGTLQIKNLRISDTGTYTC   79 (100)
T ss_dssp             SCEEEECCCCEEEESSSEEEECCEEECSSCCEEEEEESSSEESSSCSSCEEC--------TTCCEEEESCCTTTCCEEEE
T ss_pred             CCEEEeCcCCEEEcCCCcEEEEEEEEEcCCCEEEEEECCEECCCCCCCEEEc--------CCCEEEEccCCcccCEEEEE
Confidence            4677777777888999999999999999999999999876554222333221        12468999999999999999


Q ss_pred             EEecCCCceEEEEEe
Q psy4613          81 IAKNSLGEVESSIRL   95 (96)
Q Consensus        81 ~~~~~~g~~~~~~~l   95 (96)
                      .+.|..|.....+.|
T Consensus        80 ~a~n~~g~~~~~~~l   94 (100)
T 2edj_A           80 VATSSSGETSWSAVL   94 (100)
T ss_dssp             EEECSSCCCBCCEEE
T ss_pred             EEEcCCCCEEEEEEE
Confidence            999998876555443

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.71  E-value=7.2e-16  Score=72.71  Aligned_cols=81  Identities=15%  Similarity=0.264  Sum_probs=62.9

Q ss_pred             CceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCC
Q psy4613           8 NQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLG   87 (96)
Q Consensus         8 ~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g   87 (96)
                      ...+.+..|+.+.|.|.+.+.|.|.+.|++++..+.  ..+..+....     ....|.|.++...|.|.|.|.+.|..|
T Consensus        31 ~~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~--~~~~~~~~~~-----~~~~L~i~~~~~~D~G~Y~C~a~N~~G  103 (118)
T 2e7c_A           31 RQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPLD--TSRVHVRTSD-----FDTVFFVRQAARSDSGEYELSVQIENM  103 (118)
T ss_dssp             SSCEEEESSSCEEEEEEEEEESCCEEEEEETTEECC--CSSCEEEECS-----SEEEEEESSCCTTTCEEEEEEEECSSC
T ss_pred             CCCEEEECCCEEEEEEEEccCCCCEEEEEECCEECC--CCcEEEEECC-----CeEEEEECCCChhcCEEEEEEEEeCCC
Confidence            356778899999999999999999999999876553  2333333211     246799999999999999999999999


Q ss_pred             ceEEEEEe
Q psy4613          88 EVESSIRL   95 (96)
Q Consensus        88 ~~~~~~~l   95 (96)
                      .....+.|
T Consensus       104 ~~~~~~~l  111 (118)
T 2e7c_A          104 KDTATIRI  111 (118)
T ss_dssp             EECCEEEE
T ss_pred             eEEEEEEE
Confidence            76665544

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.71  E-value=7e-17  Score=75.24  Aligned_cols=90  Identities=21%  Similarity=0.255  Sum_probs=68.0

Q ss_pred             CCeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEE
Q psy4613           1 HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKC   80 (96)
Q Consensus         1 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c   80 (96)
                      +|.+...+..+.+..|+.+.|.|.+.+.|.+.+.|++++..+.. .......... .   ....|.|.+++..|.|.|.|
T Consensus         9 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~g~~~~~-~~~~~~~~~~-~---~~~~L~i~~v~~~D~G~Y~C   83 (110)
T 2dm3_A            9 RPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRP-DSAHKMLVRE-N---GVHSLIIEPVTSRDAGIYTC   83 (110)
T ss_dssp             CCEEEECCCEEEEESSSCBCCEEEEECSSCCEEECBBSSSBCCC-CSSEEEEECT-T---SCEEEEESSCCGGGCSBBCE
T ss_pred             CCcEEeCCCcEEEeCCCEEEEEEEEEEcCCCEEEEEECCEECCC-CCceEEEEec-C---CeEEEEEeeCCcccCEEEEE
Confidence            47777778888899999999999999999999999998665432 2222221111 1   13579999999999999999


Q ss_pred             EEecCCCceEEEEEe
Q psy4613          81 IAKNSLGEVESSIRL   95 (96)
Q Consensus        81 ~~~~~~g~~~~~~~l   95 (96)
                      .+.|..|.....+.|
T Consensus        84 ~a~n~~g~~~~~~~l   98 (110)
T 2dm3_A           84 IATNRAGQNSFSLEL   98 (110)
T ss_dssp             EEECSSCEEEECCEE
T ss_pred             EEECCCCEEEEEEEE
Confidence            999999876655443

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.70  E-value=6.5e-17  Score=76.30  Aligned_cols=86  Identities=24%  Similarity=0.304  Sum_probs=66.3

Q ss_pred             CCeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEE
Q psy4613           1 HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKC   80 (96)
Q Consensus         1 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c   80 (96)
                      +|.+...+....+..|+.+.|.|.+.+.+.+.+.|++++..+.....++....        ...|.|.++...|.|.|.|
T Consensus         8 pP~i~~~p~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~g~~~~~~~~~~~~~~--------~~~L~i~~v~~~D~G~Y~C   79 (118)
T 2eo9_A            8 PPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLE--------NGVLQIRYAKLGDTGRYTC   79 (118)
T ss_dssp             SCCCSBCCCCEEEETTCEEEEECBCCCSSCCEEEEEESSSBCCTTSTTEEEEE--------TTEEEEESCCGGGCCCEEE
T ss_pred             CCEEEcCCCCEEEcCCCeEEEEEEEEecCCCEEEEEECCEECcCCCCeEEEcc--------CCEEEEccCCcCCCEEEEE
Confidence            35555566677889999999999999999999999998765543334443322        2479999999999999999


Q ss_pred             EEecCCCceEEEEE
Q psy4613          81 IAKNSLGEVESSIR   94 (96)
Q Consensus        81 ~~~~~~g~~~~~~~   94 (96)
                      .+.|..|.....+.
T Consensus        80 ~a~n~~g~~~~~~~   93 (118)
T 2eo9_A           80 IASTPSGEATWSAY   93 (118)
T ss_dssp             EEECSSCEEEEECC
T ss_pred             EEEcCCCcEEEEEE
Confidence            99999987665543

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A

Probab=99.69  E-value=1.2e-15  Score=71.02  Aligned_cols=94  Identities=14%  Similarity=0.134  Sum_probs=65.7

Q ss_pred             CeEEecCceeeecCCCcEEEEEEeeeccc---ceeEEeeccceeEe--cccceEEEEec-cccceEEEEEEEccCCCCCC
Q psy4613           2 PVIHVPNQLVGAPIDTDVTLECYVEAYPK---SINYWVRDQGDMVI--SSERYEVESIS-RSIFDFKMRLTIKKITKYDL   75 (96)
Q Consensus         2 p~~~~~~~~~~~~~g~~~~l~c~~~~~~~---~~~~w~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~l~i~~~~~~d~   75 (96)
                      |.+...+..+.+..|+.+.|.|.+.+.|.   |.+.|++++.....  ...++.+.... .........|.|.+++..|.
T Consensus         5 p~f~~~p~~~~v~~G~~v~L~C~~~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~   84 (108)
T 3cx2_A            5 GLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPAFT   84 (108)
T ss_dssp             CSCSBCCCCEEEETTCCEEEEEEEECC-CCSCCEEEEEETTTEEGGGGCBTTEEEEEEEETTTTEEEEEEEECSCCGGGC
T ss_pred             cEEEeCCCcEEEeCCCCEEEEEEECCCccCCCcEEEEccCCcccccccCCceEEEeeEEecccccceEEEEEecCCCccC
Confidence            44555667788999999999999999888   89999987522111  11233322111 01111246899999999999


Q ss_pred             eeEEEEEecCCCceEEEEEe
Q psy4613          76 GSYKCIAKNSLGEVESSIRL   95 (96)
Q Consensus        76 g~y~c~~~~~~g~~~~~~~l   95 (96)
                      |.|.|.+.|..|...+.+.|
T Consensus        85 G~Y~C~a~N~~G~~~~~~~L  104 (108)
T 3cx2_A           85 GSYRCEVSTKDKFDCSNFNL  104 (108)
T ss_dssp             EEEEEEEECSSCEEEEEEEE
T ss_pred             EEEEEEEecCCCceEEEEEE
Confidence            99999999999988777665

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A

Probab=99.69  E-value=2.3e-15  Score=73.99  Aligned_cols=89  Identities=25%  Similarity=0.414  Sum_probs=68.5

Q ss_pred             CeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEE
Q psy4613           2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCI   81 (96)
Q Consensus         2 p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~   81 (96)
                      |.+...+..+.+..|..+.|.|.+.+.|.+.+.|++++..+. ...++.+.... .   ....|.|.++...|.|.|.|.
T Consensus        42 P~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~-~~~~~~~~~~~-~---~~~~L~I~~v~~~D~G~Y~C~  116 (154)
T 1fhg_A           42 PYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVK-ESRHFQIDYDE-E---GNCSLTISEVCGDDDAKYTCK  116 (154)
T ss_dssp             EEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECC-CSSSEEEEECT-T---CEEEEEESSCCGGGCEEEEEE
T ss_pred             CeEEccCCcEEEeCCCeEEEEEEEEEecCCEEEEEECCEECC-CCCcEEEEECC-C---CeEEEEECCCChhcCEEEEEE
Confidence            556666677888999999999999999999999999875543 33444433211 0   236899999999999999999


Q ss_pred             EecCCCceEEEEEe
Q psy4613          82 AKNSLGEVESSIRL   95 (96)
Q Consensus        82 ~~~~~g~~~~~~~l   95 (96)
                      +.|..|.....+.|
T Consensus       117 a~N~~G~~~~~~~l  130 (154)
T 1fhg_A          117 AVNSLGEATCTAEL  130 (154)
T ss_dssp             EEETTEEEEEEEEE
T ss_pred             EEECCCeEEEEEEE
Confidence            99999987766554

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus}

Probab=99.69  E-value=2.3e-16  Score=71.88  Aligned_cols=83  Identities=17%  Similarity=0.259  Sum_probs=63.9

Q ss_pred             CeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEE
Q psy4613           2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCI   81 (96)
Q Consensus         2 p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~   81 (96)
                      |.+...+..+.+..|+.+.|.|.+.+.+ +.+.|++++..+. ...++.+.         ...|.|.+++..|.|.|.|.
T Consensus        10 p~~~~~~~~~~v~~G~~v~l~C~~~g~p-p~i~W~k~g~~~~-~~~~~~~~---------~~~L~i~~~~~~D~G~Y~C~   78 (95)
T 2ckn_A           10 WGVPVEVESLLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLV-ESNRTRIT---------GEEVEVRDSIPADSGLYACV   78 (95)
T ss_dssp             CCBTTBBCCEEECTTSCEEEECCEESSC-CEEEEEBTTBCCC-CCSSEEEC---------SSEEEESSCCGGGSEEEEEE
T ss_pred             CEEEcCcceEEEcCCCeEEEEEECCCCC-CceEEEECCEecC-CCCCEEEe---------CCEEEECCCChHHCEEEEEE
Confidence            3444455667789999999999999987 7999999865543 23343322         25799999999999999999


Q ss_pred             EecCCCceEEEEEe
Q psy4613          82 AKNSLGEVESSIRL   95 (96)
Q Consensus        82 ~~~~~g~~~~~~~l   95 (96)
                      +.|..|.....+.|
T Consensus        79 a~n~~g~~~~~~~l   92 (95)
T 2ckn_A           79 TSSPSGSDTTYFSV   92 (95)
T ss_dssp             EEETTEEEEEEEEE
T ss_pred             eccCCCcEEEEEEE
Confidence            99999987766654

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X

Probab=99.68  E-value=7.1e-15  Score=67.88  Aligned_cols=81  Identities=21%  Similarity=0.246  Sum_probs=59.6

Q ss_pred             cCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCceEEEE
Q psy4613          14 PIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVESSI   93 (96)
Q Consensus        14 ~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~~~~~   93 (96)
                      ..+..+.|.|.+.|.|.|.+.|++++..+. ...+................|.|.++...|.|.|.|.+.|..|.....+
T Consensus        14 ~~~~~~~~~c~v~G~P~P~i~W~k~g~~l~-~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~   92 (103)
T 1wwb_X           14 TSDHHWCIPFTVKGNPKPALQWFYNGAILN-ESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQI   92 (103)
T ss_dssp             CCCCEEEEEEEEECSSCCEEEEEETTEEEC-CCSSEEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEECSSCEEEEEE
T ss_pred             eECcEEEEEEEEEEeCCCEEEEEECCEECC-CCCcEeEEEEecCCcEEEEEEEECCCCcccCEEEEEEEEeCCCcEeEEE
Confidence            457789999999999999999999876553 2233211111111111346799999999999999999999999988877


Q ss_pred             Ee
Q psy4613          94 RL   95 (96)
Q Consensus        94 ~l   95 (96)
                      .|
T Consensus        93 ~l   94 (103)
T 1wwb_X           93 SA   94 (103)
T ss_dssp             EE
T ss_pred             EE
Confidence            66

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} SCOP: b.1.1.0

Probab=99.68  E-value=1.3e-16  Score=74.08  Aligned_cols=86  Identities=22%  Similarity=0.365  Sum_probs=58.4

Q ss_pred             CeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEE
Q psy4613           2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCI   81 (96)
Q Consensus         2 p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~   81 (96)
                      |.+...+....+..|+.+.|.|.+.+.|.+.+.|++++..+. ...+.....       ....|.|.++...|.|.|.|.
T Consensus        11 P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~~~~~~~~-~~~~~~~~~-------~~~~L~i~~v~~~D~G~Y~C~   82 (108)
T 3kvq_A           11 PTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLV-EDSGIVLKD-------GNRNLTIRRVRKEDEGLYTCQ   82 (108)
T ss_dssp             CCCBSCCCCEEEETTCCEEEECBCC----CCEEEEESSSBCC-CBTTEEEET-------TTTEEEECSCCGGGCEEEEEE
T ss_pred             CceecCCCCeEEeCCCeEEEEEECcCcCCCeEEEEECCeEcc-cCCCeEEeC-------CCcEEEEeecCcccCEEEEEE
Confidence            455555666788999999999999999999999999876553 223332221       125699999999999999999


Q ss_pred             EecCCCceEEEEEe
Q psy4613          82 AKNSLGEVESSIRL   95 (96)
Q Consensus        82 ~~~~~g~~~~~~~l   95 (96)
                      +.|..|.....+.|
T Consensus        83 a~n~~g~~~~~~~l   96 (108)
T 3kvq_A           83 ACSVLGCAKVEAFF   96 (108)
T ss_dssp             EC----CEEEEEEE
T ss_pred             EEeCCCceEEEEEE
Confidence            99999987766654

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A

Probab=99.67  E-value=3.3e-15  Score=67.90  Aligned_cols=79  Identities=15%  Similarity=0.076  Sum_probs=60.8

Q ss_pred             CCeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEE
Q psy4613           1 HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKC   80 (96)
Q Consensus         1 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c   80 (96)
                      +|.+..++..+.+..|+.+.|.|.+.+ +.+.+.|++++..+. ...++.+....     ....|.|.++...|.|.|.|
T Consensus         5 ~~~~~~~~~~~~v~~G~~v~l~C~v~~-~~~~v~W~k~g~~i~-~~~~~~i~~~g-----~~~~L~I~~v~~~D~G~Y~C   77 (93)
T 1waa_A            5 LIEVEKPLYGVEVFVGETAHFEIELSE-PDVHGQWKLKGQPLA-ASPDCEIIEDG-----KKHILILHNCQLGMTGEVSF   77 (93)
T ss_dssp             CCCEEECCCCEEEETTSCEEEEEEESS-SSCCCEEEETTEECC-CBTTEEEEEET-----TEEEEEECSCCGGGCEEEEE
T ss_pred             CcEeeccCcceEEeCCCCEEEEEEECC-CCCeEEEEECCEECc-CCCCEEEEEEC-----CEEEEEECCCChhhCEEEEE
Confidence            356677778888999999999999976 557899999876553 34555544311     23579999999999999999


Q ss_pred             EEecCC
Q psy4613          81 IAKNSL   86 (96)
Q Consensus        81 ~~~~~~   86 (96)
                      .+.|..
T Consensus        78 ~a~n~~   83 (93)
T 1waa_A           78 QAANTK   83 (93)
T ss_dssp             EETTEE
T ss_pred             EECCCc
Confidence            998753

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A

Probab=99.66  E-value=5.2e-15  Score=71.40  Aligned_cols=87  Identities=15%  Similarity=0.159  Sum_probs=64.1

Q ss_pred             CCeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEec---------ccceEEEEeccccceEEEEEEEccCC
Q psy4613           1 HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVIS---------SERYEVESISRSIFDFKMRLTIKKIT   71 (96)
Q Consensus         1 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~l~i~~~~   71 (96)
                      +|.+...+..+.+..|+.+.|.|.+.+.|.|.+.|++++..+...         ..+.........  .....|.|.+++
T Consensus        21 pP~~~~~p~~~~v~~G~~v~L~C~~~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~L~I~~v~   98 (137)
T 3qr2_A           21 MAGFVQAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLDRVHIHATYHQ--HAASTISIDTLV   98 (137)
T ss_dssp             CCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEEEESSTTCCCEECCTTHHHHTEEEEEEESS--SEEEEEEECSCC
T ss_pred             CCeEEcCCCCEEEeCCCCEEEEEEEeeecCCeEEEEECCCCccccceeecccCcccceEEeccccc--ccceEEEECCCC
Confidence            477777778888999999999999999999999999865433110         122222211111  134689999999


Q ss_pred             CCCCeeEEEEEecCCCce
Q psy4613          72 KYDLGSYKCIAKNSLGEV   89 (96)
Q Consensus        72 ~~d~g~y~c~~~~~~g~~   89 (96)
                      ..|.|.|.|.+.|..|..
T Consensus        99 ~~D~G~Y~C~a~N~~G~~  116 (137)
T 3qr2_A           99 EEDTGTYECRASNDPDRN  116 (137)
T ss_dssp             GGGCEEEEEEEECCTTSS
T ss_pred             cccCEEEEEEEEecCCcc
Confidence            999999999999988863

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A

Probab=99.65  E-value=5.4e-16  Score=71.11  Aligned_cols=80  Identities=20%  Similarity=0.488  Sum_probs=60.7

Q ss_pred             ceeeecCCCcEEEEEEeeecccceeEEeeccceeEeccc--ceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCC
Q psy4613           9 QLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSE--RYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSL   86 (96)
Q Consensus         9 ~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~   86 (96)
                      ..+.+..|+.+.|.|.+.+.|.+.+.|++++..+.....  ......       ....|.|.++...|.|.|.|.+.|..
T Consensus        16 ~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~-------~~~~L~i~~v~~~D~G~Y~C~a~N~~   88 (100)
T 3caf_A           16 RLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRN-------QHWSLIMESVVPSDKGNYTCVVENEY   88 (100)
T ss_dssp             CEEEECTTCCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEEG-------GGTEEEECSCCGGGCEEEEEEEEETT
T ss_pred             cEEEecCCCEEEEEEEccccCCCEEEEEECCEEcccccccccEEEec-------CeEEEEEccCCcCCCEEEEEEEEeCC
Confidence            456788999999999999999999999998755432111  111111       12468999999999999999999999


Q ss_pred             CceEEEEEe
Q psy4613          87 GEVESSIRL   95 (96)
Q Consensus        87 g~~~~~~~l   95 (96)
                      |.....+.|
T Consensus        89 g~~~~~~~l   97 (100)
T 3caf_A           89 GSINHTYHL   97 (100)
T ss_dssp             EEEEEEEEE
T ss_pred             CEEEEEEEE
Confidence            987766654

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.65  E-value=4.2e-15  Score=68.36  Aligned_cols=77  Identities=17%  Similarity=0.201  Sum_probs=59.8

Q ss_pred             CeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEE
Q psy4613           2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCI   81 (96)
Q Consensus         2 p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~   81 (96)
                      |.+..+...+.+..|+.+.|.|.+  .|.+.+.|++++..+. ...++.+....     ....|.|.++...|.|.|.|.
T Consensus         8 ~~~~~~~~~~~v~~G~~v~l~C~v--~p~p~v~W~k~g~~l~-~~~r~~i~~~~-----~~~~L~I~~v~~~D~G~Y~C~   79 (100)
T 2yuz_A            8 LKILTPLTDQTVNLGKEICLKCEI--SENIPGKWTKNGLPVQ-ESDRLKVVQKG-----RIHKLVIANALTEDEGDYVFA   79 (100)
T ss_dssp             CCCSBCCCCEEEETTSCCCEEEEC--SSCCCEEEEETTEECC-CCSSEEEEECS-----SEEEEEESSCCGGGCSEEEEE
T ss_pred             CEEeccCCceEEcCCCCEEEEEEe--CCCCeEEEEECCEECC-CCCcEEEEEeC-----CEEEEEECCCChhhCEEEEEE
Confidence            445556677789999999999999  6888999999876553 34555544321     246799999999999999999


Q ss_pred             EecCC
Q psy4613          82 AKNSL   86 (96)
Q Consensus        82 ~~~~~   86 (96)
                      +.|..
T Consensus        80 a~N~~   84 (100)
T 2yuz_A           80 PDAYN   84 (100)
T ss_dssp             ESSSC
T ss_pred             EcCCC
Confidence            99973

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}

Probab=99.63  E-value=5.5e-15  Score=75.75  Aligned_cols=77  Identities=25%  Similarity=0.426  Sum_probs=61.5

Q ss_pred             eeecCCCcEEEEEEeeec-ccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCce
Q psy4613          11 VGAPIDTDVTLECYVEAY-PKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEV   89 (96)
Q Consensus        11 ~~~~~g~~~~l~c~~~~~-~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~   89 (96)
                      ..+..|..+.|.|.+.+. |.|.+.|++++..+.. ..++...       .....|.|.++...|.|.|.|.+.|..|..
T Consensus       126 ~~v~~g~~v~l~C~v~g~~P~p~i~W~k~g~~l~~-~~~~~~~-------~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~  197 (207)
T 3rbs_A          126 WEVTGECNVLLKCKVANIKKETHIVWYKDEREISV-DEKHDFK-------DGICTLLITEFSKKDAGIYEVILKDDRGKD  197 (207)
T ss_dssp             EEEETTTEEEEEEEEESCCTTCEEEEEETTEEECC-CCCCCCS-------SEEEEEEETTCCGGGCEEEEEEEEETTEEE
T ss_pred             cEEcCCCcEEEEEEEeCCCCCCEEEEEECCEECCC-CCceEcC-------CCEEEEEECCCCcccCEEEEEEEEcCCCEE
Confidence            567889999999999998 8999999998766532 2222111       134679999999999999999999999998


Q ss_pred             EEEEEe
Q psy4613          90 ESSIRL   95 (96)
Q Consensus        90 ~~~~~l   95 (96)
                      .+...|
T Consensus       198 ~~~~~L  203 (207)
T 3rbs_A          198 KSRLKL  203 (207)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            887766

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens}

Probab=99.62  E-value=5e-15  Score=66.89  Aligned_cols=74  Identities=15%  Similarity=0.197  Sum_probs=60.2

Q ss_pred             CeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEE
Q psy4613           2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCI   81 (96)
Q Consensus         2 p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~   81 (96)
                      +.+...+....+..|+.+.|.|.+.+.|.+.+.|++++..+... .              ...|.|.++...|.|.|.|.
T Consensus         4 ~~i~~~p~~~~v~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~-~--------------~~~L~i~~v~~~d~G~Y~C~   68 (91)
T 3bfo_A            4 LQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHE-T--------------KKLYMVPYVDLEHQGTYWCH   68 (91)
T ss_dssp             CEEEECCCCEEECTTSCEEEECEEECSSCCEEEEEETTEECTTC-C--------------SSEEEESSCCGGGCEEEEEE
T ss_pred             eEEEECCCccEecCCCcEEEEEEeccCCCCEEEEEcCCeeCCcC-C--------------CCeEEECCCCHHhCEEEEEE
Confidence            56667777788999999999999999999999999986543211 1              14688999999999999999


Q ss_pred             EecCCCceE
Q psy4613          82 AKNSLGEVE   90 (96)
Q Consensus        82 ~~~~~g~~~   90 (96)
                      +.|..|...
T Consensus        69 a~n~~g~~~   77 (91)
T 3bfo_A           69 VYNDRDSQD   77 (91)
T ss_dssp             EECSSCEEE
T ss_pred             EEcCCCCEE
Confidence            999988643

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.62  E-value=8.9e-15  Score=67.75  Aligned_cols=79  Identities=13%  Similarity=0.214  Sum_probs=61.1

Q ss_pred             CCeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEE
Q psy4613           1 HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKC   80 (96)
Q Consensus         1 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c   80 (96)
                      +|.+..++..+.+..|+.+.|.|.+.+.+.+ +.|++++..+. ...++.+....     ....|.|.++...|.|.|.|
T Consensus         8 ~p~~~~~~~~~~v~~G~~v~l~C~~~~~~~~-v~W~k~g~~~~-~~~~~~~~~~~-----~~~~L~I~~v~~~D~G~Y~C   80 (106)
T 2dlt_A            8 QLEVLQDIADLTVKAAEQAVFKCEVSDEKVT-GKWYKNGVEVR-PSKRITISHVG-----RFHKLVIDDVRPEDEGDYTF   80 (106)
T ss_dssp             CCCEEECCCCEEEESSCCEECCCEESCSSCE-EEEEESSCBCC-CCSSCEEEEET-----TEEEEEESSCCTTTCSCEEE
T ss_pred             CCEEecCCCCeEEeCCCeEEEEEEEcCCCcc-eEEEcCCEECc-CCCCEEEEEeC-----CEEEEEECCCCcCCCEEEEE
Confidence            3566677778889999999999999988877 99999876553 33444443211     23579999999999999999


Q ss_pred             EEecCC
Q psy4613          81 IAKNSL   86 (96)
Q Consensus        81 ~~~~~~   86 (96)
                      .+.|..
T Consensus        81 ~a~n~~   86 (106)
T 2dlt_A           81 VPDGYA   86 (106)
T ss_dssp             EEETSC
T ss_pred             EEccCC
Confidence            999873

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X

Probab=99.61  E-value=5.6e-14  Score=66.91  Aligned_cols=80  Identities=16%  Similarity=0.152  Sum_probs=59.3

Q ss_pred             CCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEecc--ccceEEEEEEEccCCCCCCeeEEEEEecCCCceEEE
Q psy4613          15 IDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISR--SIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVESS   92 (96)
Q Consensus        15 ~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~~~~   92 (96)
                      .+..+.|.|.+.|.|.|.+.|++++..+. ...+........  ........|.|..+...|.|.|.|.+.|..|.....
T Consensus        14 ~~~~~~l~c~v~G~P~P~I~W~knG~~l~-~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~t   92 (126)
T 1he7_A           14 EMHHWCIPFSVDGQPAPSLRWLFNGSVLN-ETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASAS   92 (126)
T ss_dssp             CCCEEEEEEEECCSSCCEEEEEETTEECC-CCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEEETTEEEEEE
T ss_pred             cCccEEEEEEEeeeCCCeEEEEECCEECC-CCCceeEEEeeccccccccceEEEECcCCCCCCEEEEEEEEECCCeEEEE
Confidence            56789999999999999999999976553 333332221110  111124679999999999999999999999998877


Q ss_pred             EEe
Q psy4613          93 IRL   95 (96)
Q Consensus        93 ~~l   95 (96)
                      +.|
T Consensus        93 ~~l   95 (126)
T 1he7_A           93 IMA   95 (126)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            665

>2lvc_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=99.61  E-value=4.5e-15  Score=67.18  Aligned_cols=77  Identities=23%  Similarity=0.327  Sum_probs=56.1

Q ss_pred             CeEEecCce--eeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEE
Q psy4613           2 PVIHVPNQL--VGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYK   79 (96)
Q Consensus         2 p~~~~~~~~--~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~   79 (96)
                      |.+..|...  +.+..|+.+.|.|.+.+ |.+.+.|++++..+. ...++.+....     ....|.|.++...|.|.|.
T Consensus         5 ~~i~~p~~~~~v~~~~g~~v~l~C~v~~-p~~~v~W~k~g~~i~-~~~~~~i~~~~-----~~~~L~I~~v~~~D~G~Y~   77 (91)
T 2lvc_A            5 VHIVDPREHVFVHAITSECVMLACEVDR-EDAPVRWYKDGQEVE-ESDFVVLENEG-----PHRRLVLPATQPSDGGEFQ   77 (91)
T ss_dssp             CCCCBCCSCEEEECCTTCCEEEEEECSC-TTSCCEEEETTSCCC-CCSSCEEEEET-----TEEEEEESSCCGGGCSEEE
T ss_pred             cEEeccCCCeEEEEECCCcEEEEEEECC-CCcEEEEEECCEEee-eeeeeeEEecC-----CeEEEEeCCCChhhcEEEE
Confidence            344445443  34568999999999865 888899999876654 34555544321     2357999999999999999


Q ss_pred             EEEecC
Q psy4613          80 CIAKNS   85 (96)
Q Consensus        80 c~~~~~   85 (96)
                      |.+.|.
T Consensus        78 C~a~n~   83 (91)
T 2lvc_A           78 CVAGDE   83 (91)
T ss_dssp             EECSSC
T ss_pred             EEEcce
Confidence            998664

>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus}

Probab=99.61  E-value=6.6e-14  Score=64.75  Aligned_cols=88  Identities=17%  Similarity=0.210  Sum_probs=62.4

Q ss_pred             eEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEec-------ccceEEEEeccccceEEEEEEEccCCCCCC
Q psy4613           3 VIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVIS-------SERYEVESISRSIFDFKMRLTIKKITKYDL   75 (96)
Q Consensus         3 ~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~   75 (96)
                      .+...+..+.+..|+.+.|.|.+.+.+.+.+.|++.+......       ..++.......    ....|.|.+++..|.
T Consensus         8 ~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~----~~~~L~I~~v~~~D~   83 (108)
T 3m45_A            8 GQFPLTQNVTVVEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASW----HELSISVSDVSLSDE   83 (108)
T ss_dssp             CCCEECCCEEEETTSCEEEEEEESSCSSCCEEEECTTCCEEEETTEECSCCTTEEEEEESS----SEEEEEECSCCGGGC
T ss_pred             CccccCCeeEEEeCCcEEEEeEEcCCCccEEEEEcCCCceEEEcCCcccccCcEEEeecCC----CcEEEEECCCChhHC
Confidence            3344456678899999999999999888999999875422211       12433322110    246899999999999


Q ss_pred             eeEEEEEecCCCceEEEEEe
Q psy4613          76 GSYKCIAKNSLGEVESSIRL   95 (96)
Q Consensus        76 g~y~c~~~~~~g~~~~~~~l   95 (96)
                      |.|.|.+.+ .+.......|
T Consensus        84 G~Y~C~~~n-~~~~~~~~~L  102 (108)
T 3m45_A           84 GQYTCSLFT-MPVKTSKAYL  102 (108)
T ss_dssp             EEEEEEECS-SSCEEEEEEE
T ss_pred             eEEEEEEEc-CCCcEEEEEE
Confidence            999999999 7766555543

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A

Probab=99.61  E-value=9.1e-14  Score=70.21  Aligned_cols=90  Identities=22%  Similarity=0.352  Sum_probs=68.8

Q ss_pred             CCeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEE
Q psy4613           1 HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKC   80 (96)
Q Consensus         1 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c   80 (96)
                      +|.+...+....+..|+.+.|.|.+.+.|.+.+.|++++..+.....++.......    ....|.|.+++..|.|.|.|
T Consensus         4 ~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~----~~~~L~i~~~~~~d~G~Y~C   79 (197)
T 2j8h_A            4 APHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKG----GYHQLIIASVTDDDATVYQV   79 (197)
T ss_dssp             CCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEECCCCSSSEEEEEETT----TEEEEEECSCCGGGCSEEEE
T ss_pred             CCEEEEcCCccEEcCCCEEEEEEEEeecCCCEEEEEECCEECccCCCcEEEEEcCC----CEEEEEECcCCHHhCEEEEE
Confidence            57787777888899999999999999989999999998766543334444332111    23489999999999999999


Q ss_pred             EEecCCCceEEEEE
Q psy4613          81 IAKNSLGEVESSIR   94 (96)
Q Consensus        81 ~~~~~~g~~~~~~~   94 (96)
                      .+.+..|.....+.
T Consensus        80 ~~~n~~g~~~~~~~   93 (197)
T 2j8h_A           80 RATNQGGSVSGTAS   93 (197)
T ss_dssp             EEEETTEEEEEEEE
T ss_pred             EEEECCCceeEEEE
Confidence            99998776554443

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1

Probab=99.60  E-value=1.4e-15  Score=72.11  Aligned_cols=93  Identities=30%  Similarity=0.429  Sum_probs=68.2

Q ss_pred             CCeEEecCceeeecCCCcEEEEEEeeecccce-eEEeeccceeEe-cccceEEEEeccccceEEEEEEEccCCCCCC-ee
Q psy4613           1 HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSI-NYWVRDQGDMVI-SSERYEVESISRSIFDFKMRLTIKKITKYDL-GS   77 (96)
Q Consensus         1 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~-~~w~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~-g~   77 (96)
                      +|.+.. +....+..|+.+.|.|.+.+.|.|. +.|++++..+.. ...++.+..... .......|.|.++...|. |.
T Consensus        14 ~P~i~~-~~~~~~~~G~~v~l~C~~~g~P~p~~i~W~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~L~I~~v~~~D~~G~   91 (122)
T 2cry_A           14 PPIISS-TQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETIST-EEGVISTLTISNIVRADFQTI   91 (122)
T ss_dssp             SCCEEE-ECCCCCCTTSCCCCCEEECCSSCCSEEEEESSSCEECSEEETTEEEEEEEE-TTEEEEEEECTTCCHHHHHSC
T ss_pred             CCCccC-CCeEEEecCCCEEEEEEEeecCCCcEeEEEECCEEccCCCCCCEEEEEecC-CCceEEEEEEcCCChhhCCce
Confidence            355555 5566788999999999999999987 999998765532 134444432111 111256899999999998 99


Q ss_pred             EEEEEecCCCceEEEEEe
Q psy4613          78 YKCIAKNSLGEVESSIRL   95 (96)
Q Consensus        78 y~c~~~~~~g~~~~~~~l   95 (96)
                      |.|.+.|..|.....+.|
T Consensus        92 Y~C~a~N~~G~~~~~~~l  109 (122)
T 2cry_A           92 YNCTAWNSFGSDTEIIRL  109 (122)
T ss_dssp             EEEEEECSSCEEEEEECC
T ss_pred             EEEEEECCCCeEEEEEEE
Confidence            999999999988776654

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4

Probab=99.60  E-value=2.8e-14  Score=65.14  Aligned_cols=78  Identities=23%  Similarity=0.353  Sum_probs=59.4

Q ss_pred             cCceeeecCCCcEEEEEEee-ecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecC
Q psy4613           7 PNQLVGAPIDTDVTLECYVE-AYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNS   85 (96)
Q Consensus         7 ~~~~~~~~~g~~~~l~c~~~-~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~   85 (96)
                      .+....+..|+.+.|.|.+. +.+.+.+.|++++.... . .....         ....|.|.+++..|.|.|.|.+.|.
T Consensus        16 ~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~k~~~~~~-~-~~~~~---------~~~~L~i~~v~~~D~G~Y~C~a~n~   84 (98)
T 1gl4_B           16 EQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKL-P-SRAMD---------FNGILTIRNVQPSDAGTYVCTGSNM   84 (98)
T ss_dssp             SCCEEEECTTCCEEEEEEEEESSSCCEEEEEEGGGBCC-C-TTEEE---------ETTEEEECSCCGGGCEEEEEEEECS
T ss_pred             CCCCeEEecCCCEEEEEeCCCCCCCcEEEEEeCCCCCC-C-ceeec---------CCCEEEEeCCChhhCEEEEEEecCC
Confidence            34666789999999999998 57888999998743322 1 11111         1247999999999999999999999


Q ss_pred             CCceEEEEEe
Q psy4613          86 LGEVESSIRL   95 (96)
Q Consensus        86 ~g~~~~~~~l   95 (96)
                      .|.....+.|
T Consensus        85 ~g~~~~~~~l   94 (98)
T 1gl4_B           85 FAMDQGTATL   94 (98)
T ss_dssp             SCEEEEEEEE
T ss_pred             CCccccEEEE
Confidence            9987766654

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A

Probab=99.59  E-value=2.3e-13  Score=69.57  Aligned_cols=89  Identities=21%  Similarity=0.327  Sum_probs=68.2

Q ss_pred             CCeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCC-CCCeeEE
Q psy4613           1 HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITK-YDLGSYK   79 (96)
Q Consensus         1 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~-~d~g~y~   79 (96)
                      +|.+...+....+..|+.+.|.|.+.+.+.+.+.|++++..+.....++.......    ....|.|.++.. .|.|.|.
T Consensus         6 pP~~~~~p~~~~v~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~----~~~~L~i~~v~~~~d~G~Y~   81 (212)
T 2yd1_A            6 PPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPG----GISILRIEPVRAGRDDAPYE   81 (212)
T ss_dssp             CCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEECCTTSTTEEEEEETT----TEEEEEESSCCTTTTCSEEE
T ss_pred             CCEEEcCCCceEEecCCEEEEEEEEccCCCCeEEEEECCEECCCCcceeEEEEcCC----CeEEEEEEecCCCCcCceEE
Confidence            57777778888899999999999999999999999998765542344544432111    136799999999 9999999


Q ss_pred             EEEecCCCc-eEEEE
Q psy4613          80 CIAKNSLGE-VESSI   93 (96)
Q Consensus        80 c~~~~~~g~-~~~~~   93 (96)
                      |.+.+..|. ....+
T Consensus        82 C~~~n~~g~~~~~~~   96 (212)
T 2yd1_A           82 CVAENGVGDAVSADA   96 (212)
T ss_dssp             EEEECSSSCEEEEEE
T ss_pred             EEEEeCCCCeEEeeE
Confidence            999998887 44443

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.59  E-value=7.8e-14  Score=66.44  Aligned_cols=92  Identities=16%  Similarity=0.168  Sum_probs=62.8

Q ss_pred             EEecCceeeecCCCcEEEEEEeeec---ccceeEEeeccceeEe--cccceEEEE-eccccceEEEEEEEccCCCCCCee
Q psy4613           4 IHVPNQLVGAPIDTDVTLECYVEAY---PKSINYWVRDQGDMVI--SSERYEVES-ISRSIFDFKMRLTIKKITKYDLGS   77 (96)
Q Consensus         4 ~~~~~~~~~~~~g~~~~l~c~~~~~---~~~~~~w~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~l~i~~~~~~d~g~   77 (96)
                      +...+..+.+..|+.+.|.|.+.+.   |.|.+.|+++......  ...++.+.. ...........|.|.++...|+|.
T Consensus        10 F~~~P~~v~V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DaG~   89 (126)
T 2dav_A           10 FIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFAGN   89 (126)
T ss_dssp             CCSCCCCCEEETTCCEEEEEEEECCCSSSCCEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTTSCEE
T ss_pred             EEEcCCCeEEeCCCCEEEEEEEeccCCCCCCcEEEeeCcCcccCCCCCceEEEccccccccccceEEEEEccCCcccCEE
Confidence            3345577789999999999998864   7899999996311110  122333321 111111124789999999999999


Q ss_pred             EEEEEecCCCceEEEEEe
Q psy4613          78 YKCIAKNSLGEVESSIRL   95 (96)
Q Consensus        78 y~c~~~~~~g~~~~~~~l   95 (96)
                      |.|.+.|..|...+.+.|
T Consensus        90 Y~Cevsn~~g~~~~~~~L  107 (126)
T 2dav_A           90 YRCEVTYKDKFDSCSFDL  107 (126)
T ss_dssp             EEEEEECSSCEEEECCEE
T ss_pred             EEEEEEeCCCcEEEEEEE
Confidence            999999998877665544

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens}

Probab=99.59  E-value=1.1e-13  Score=70.99  Aligned_cols=88  Identities=24%  Similarity=0.361  Sum_probs=65.8

Q ss_pred             CeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecc-cceEEEEeccccceEEEEEEEccCCCCCCeeEEE
Q psy4613           2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISS-ERYEVESISRSIFDFKMRLTIKKITKYDLGSYKC   80 (96)
Q Consensus         2 p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c   80 (96)
                      |.+. .+..+.+..|+.+.|.|.+.+.|.+.+.|++++..+.... .++.+....     ....|.|.++...|.|.|.|
T Consensus        20 P~~~-~p~~~~~~~G~~v~l~C~~~g~p~p~i~W~~~g~~l~~~~~~~~~~~~~~-----~~~~L~i~~~~~~d~G~Y~C   93 (215)
T 3mtr_A           20 PKLQ-GPVAVYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYNTP-----SASYLEVTPDSENDFGNYNC   93 (215)
T ss_dssp             EEEE-CCSEEEECTTCCEEEEEEEEEESCCEEEEEETTEESSCSSSCSEEEEEET-----TEEEEEECCCSGGGCEEEEE
T ss_pred             Cccc-CCceEEEECCCCEEEEEEEeecCCCEEEEEECCeECCCCCCccEEEecCC-----CeeEEEEecCChhhCeEEEE
Confidence            4553 4445778899999999999999999999999876553221 233332211     24789999999999999999


Q ss_pred             EEecCCCceEEEEEe
Q psy4613          81 IAKNSLGEVESSIRL   95 (96)
Q Consensus        81 ~~~~~~g~~~~~~~l   95 (96)
                      .+.|..|.....+.|
T Consensus        94 ~a~n~~g~~~~~~~l  108 (215)
T 3mtr_A           94 TAVNRIGQESLEFIL  108 (215)
T ss_dssp             EEECSSCEEEEEEEE
T ss_pred             EEEECCCceEEEEEE
Confidence            999999987665543

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens}

Probab=99.59  E-value=9.5e-14  Score=63.11  Aligned_cols=73  Identities=21%  Similarity=0.318  Sum_probs=55.5

Q ss_pred             eEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEE
Q psy4613           3 VIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIA   82 (96)
Q Consensus         3 ~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~   82 (96)
                      .+..++..+.+..|..+.|.|.+ +.+.+.+.|++++..+. ...++.+....     ....|.|.++...|.|.|.|.+
T Consensus        10 ~~~~~~~~~~v~~G~~v~l~C~~-~~p~~~v~W~k~~~~l~-~~~~~~~~~~~-----~~~~L~I~~v~~~D~G~Y~C~a   82 (95)
T 2k1m_A           10 AFSKKPRSVEVAAGSPAVFEAET-ERAGVKVRWQRGGSDIS-ASNKYGLATEG-----TRHTLTVREVGPADQGSYAVIA   82 (95)
T ss_dssp             CCSBCCCCEEEETTSCEEEEEEC-SSSSCCCEEECSSSEEC-SSTTCEEEEET-----TEEEEEESSCCTTCCSEEEEEE
T ss_pred             eeEeCCCcEEEeCCCcEEEEEEe-CCCCCeEEEEECCEECC-CCCcEEEEEcC-----CEEEEEEcCCCcccCEEEEEEE
Confidence            34445667788999999999999 77888999999876543 33455443311     2357999999999999999998

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.59  E-value=5.5e-14  Score=64.70  Aligned_cols=77  Identities=22%  Similarity=0.343  Sum_probs=59.7

Q ss_pred             CCeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEE
Q psy4613           1 HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKC   80 (96)
Q Consensus         1 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c   80 (96)
                      +|.+..++..+.+..|+.+.|.|.+.+ +.+.+.|++++..+. ...++.+....     ....|.|.++...|.|.|.|
T Consensus         8 pp~~~~~~~~~~v~~G~~v~l~C~~~~-~~~~v~W~k~g~~~~-~~~~~~~~~~~-----~~~~L~I~~v~~~D~G~Y~C   80 (103)
T 2edf_A            8 PAAIIKPLEDQWVAPGEDVELRCELSR-AGTPVHWLKDRKAIR-KSQKYDVVCEG-----TMAMLVIRGASLKDAGEYTC   80 (103)
T ss_dssp             CCCEEECCCCEEECTTSCEEECCEESS-SSCCCCEEESSCBCC-CSSSEEEEEET-----TEEEEEESSCCTTTCSEEEE
T ss_pred             CcEEEecCCccEEcCCCCEEEEEEEeC-CCCcEEEEECCEEcc-CCCCEEEEECC-----CEEEEEECCCCcccCEEEEE
Confidence            456666777788999999999999987 778899999876553 33444443211     24579999999999999999


Q ss_pred             EEec
Q psy4613          81 IAKN   84 (96)
Q Consensus        81 ~~~~   84 (96)
                      .+.|
T Consensus        81 ~a~n   84 (103)
T 2edf_A           81 EVEA   84 (103)
T ss_dssp             ECSS
T ss_pred             EEcc
Confidence            9988

>2lu7_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=99.58  E-value=2.1e-14  Score=64.09  Aligned_cols=71  Identities=21%  Similarity=0.305  Sum_probs=54.2

Q ss_pred             ceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCC
Q psy4613           9 QLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSL   86 (96)
Q Consensus         9 ~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~   86 (96)
                      ..+.+..|+.+.|.|.+.+ |.|.+.|++++..+. ...++.+....     ....|.|.++...|.|.|.|.+.+..
T Consensus         4 t~v~~~~G~~v~l~C~vs~-p~p~v~W~k~g~~l~-~~~~~~~~~~~-----~~~~L~I~~~~~~D~G~Y~C~a~n~~   74 (84)
T 2lu7_A            4 TRVRSTPGGDLELVVHLSG-PGGPVRWYKDGERLA-SQGRVQLEQAG-----ARQVLRVQGARSGDAGEYLCDAPQDS   74 (84)
T ss_dssp             CCEEECTTSCEEEECCCSC-CSTTCEEEETTEECC-CCSSEEEEECS-----SCEEEEESSCSSTTCEEEEEECTTTC
T ss_pred             eEEEEecCCCEEEEEEECC-CCcEEEEEECCEEcc-ccccEEEeecC-----CeEEEEecCCCCcccEEEEEEECCEE
Confidence            3567889999999999866 888999999876654 34555443321     23579999999999999999986643

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.58  E-value=3.4e-14  Score=65.53  Aligned_cols=73  Identities=19%  Similarity=0.252  Sum_probs=56.1

Q ss_pred             eeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCceE
Q psy4613          11 VGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVE   90 (96)
Q Consensus        11 ~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~~   90 (96)
                      +.+..|+.+.|.|.+.+.+.+ +.|++++..+. ...++.+....     ....|.|.+++..|.|.|.|.+.|..+...
T Consensus        20 ~~v~~G~~v~l~C~~~~~p~~-v~W~k~g~~~~-~~~~~~~~~~~-----~~~~L~I~~~~~~D~G~Y~C~a~n~~~~~~   92 (104)
T 2e6p_A           20 LTFTTSERVVLTCELSRVDFP-ATWYKDGQKVE-ESELLVVKMDG-----RKHRLILPEAKVQDSGEFECRTEGVSAFFG   92 (104)
T ss_dssp             EEEESSSCEECCEECSSTTCC-CEEEETTEECC-CBTTBEEEEET-----TEEEEEESSCCTTTCEEEEEECSSCCCCEE
T ss_pred             EEEeCCCcEEEEEEecCCCCc-cEEeeCCEECC-CCCCEEEEeCC-----CEEEEEECCCChhhCEEEEEEECCceEEEE
Confidence            678999999999999998888 99999876543 23344433211     246799999999999999999998766443

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}

Probab=99.58  E-value=5.9e-13  Score=66.99  Aligned_cols=89  Identities=26%  Similarity=0.330  Sum_probs=65.6

Q ss_pred             CeEEecCceeeecCCCcEEEEEEeeecccceeEEee--ccceeEe--cccceEEEEeccccceEEEEEEEccCC-CCCCe
Q psy4613           2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVR--DQGDMVI--SSERYEVESISRSIFDFKMRLTIKKIT-KYDLG   76 (96)
Q Consensus         2 p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~g   76 (96)
                      |.+...+....+..|..+.|.|.+.+.|.+.+.|++  ++..+..  ...++......     ....|.|.++. ..|.|
T Consensus        93 p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~g~~~~~~~~~~~~~~~~~~-----~~~~L~i~~~~~~~d~G  167 (190)
T 2wv3_A           93 PDITGHKRSENKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKE-----NYTELNIVNLQITEDPG  167 (190)
T ss_dssp             CEEEEECSEEEEETTSCEEEEEEEECSSCCEEEEEEEETTEEEECCCTTSCEEEEECS-----SEEEEEECSCCTTTSCE
T ss_pred             CcccccCCcceeeCCCcEEEEEEeCccCCCceEEEEcCCCceeeeecCCCeEEEecCC-----CeeEEEEEeccccCCCE
Confidence            555555556678899999999999999999999998  4333321  23344333211     23579999999 79999


Q ss_pred             eEEEEEecCCCceEEEEEe
Q psy4613          77 SYKCIAKNSLGEVESSIRL   95 (96)
Q Consensus        77 ~y~c~~~~~~g~~~~~~~l   95 (96)
                      .|.|.+.|..|.....+.|
T Consensus       168 ~Y~C~a~N~~g~~~~~~~l  186 (190)
T 2wv3_A          168 EYECNATNSIGSASVSTVL  186 (190)
T ss_dssp             EEEEEEECSSCEEEEEEEE
T ss_pred             EEEEEEEecCCcceeEEEE
Confidence            9999999999988776654

>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens}

Probab=99.58  E-value=1.2e-13  Score=65.59  Aligned_cols=85  Identities=18%  Similarity=0.356  Sum_probs=61.8

Q ss_pred             ecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEe-------cccceEEEEeccccceEEEEEEEccCCCCCCeeE
Q psy4613           6 VPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVI-------SSERYEVESISRSIFDFKMRLTIKKITKYDLGSY   78 (96)
Q Consensus         6 ~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y   78 (96)
                      ..+..+.+..|+++.|.|.+.+.+.+.+.|++.+.....       ...++......    .....|.|.+++..|+|.|
T Consensus         6 ~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~----~~~~~L~I~~v~~~DsG~Y   81 (124)
T 3rbg_A            6 NHTETITVEEGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHHS----ANQLSITVPNVTLQDEGVY   81 (124)
T ss_dssp             CSEEEEEEETTSCEEEEEECCCCTTCEEEEECTTSCEEEETTEECSCSSCCEEEEEE----TTEEEEEESSCCGGGCEEE
T ss_pred             CCCccEEEcCCCCEEEEeEEeccCCCEEEEECCCCeEEEEeccccccCCcEEEEeCC----CCEEEEEECCCChHHCEEE
Confidence            445667889999999999999989999999976554332       22333332100    0246899999999999999


Q ss_pred             EEEEecCCCceEEEEEe
Q psy4613          79 KCIAKNSLGEVESSIRL   95 (96)
Q Consensus        79 ~c~~~~~~g~~~~~~~l   95 (96)
                      .|.+.+. |.......|
T Consensus        82 ~C~a~n~-g~~~~~~~l   97 (124)
T 3rbg_A           82 KCLHYSD-SVSTKEVKV   97 (124)
T ss_dssp             EEEEESS-SEEEEEEEE
T ss_pred             EEEEEcC-CCCcEEEEE
Confidence            9999998 766655543

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A

Probab=99.58  E-value=1.6e-13  Score=62.86  Aligned_cols=74  Identities=16%  Similarity=0.123  Sum_probs=55.6

Q ss_pred             CeEEecCce-eeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEE
Q psy4613           2 PVIHVPNQL-VGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKC   80 (96)
Q Consensus         2 p~~~~~~~~-~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c   80 (96)
                      |.+..++.. +.+..|+.+.|.|.+. .|.+.+.|++++..+. ...++.+....     ....|.|.++...|.|.|.|
T Consensus         8 p~~~~~~~~~~~v~~G~~v~l~C~~~-~p~~~v~W~k~g~~i~-~~~~~~~~~~~-----~~~~L~I~~~~~~D~G~Y~C   80 (100)
T 2yuv_A            8 AAFAKILDPAYQVDKGGRVRFVVELA-DPKLEVKWYKNGQEIR-PSTKYIFEHKG-----CQRILFINNCQMTDDSEYYV   80 (100)
T ss_dssp             CCEEECCCSCEEECTTEEEEEEEEES-CTTSCEEEEESSCBCC-CBTTEEEEEET-----TEEEEEEEEECTTTCCEEEE
T ss_pred             CeEEecCCCccEEcCCCcEEEEEEec-CCCceEEEEECCEECC-CCCCEEEEecC-----CEEEEEEcCCCcCcCEEEEE
Confidence            555555544 6788999999999998 6888999999876553 33455443311     23579999999999999999


Q ss_pred             EE
Q psy4613          81 IA   82 (96)
Q Consensus        81 ~~   82 (96)
                      .+
T Consensus        81 ~a   82 (100)
T 2yuv_A           81 TA   82 (100)
T ss_dssp             EE
T ss_pred             EE
Confidence            98

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}

Probab=99.57  E-value=2.4e-13  Score=68.52  Aligned_cols=88  Identities=28%  Similarity=0.428  Sum_probs=67.2

Q ss_pred             CCeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEE
Q psy4613           1 HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKC   80 (96)
Q Consensus         1 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c   80 (96)
                      +|.+...+..+.+..|+.+.|.|.+.+.+.+.+.|++++..+. ...++......     ....|.|.++...|.|.|.|
T Consensus         7 ~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~-~~~~~~~~~~~-----~~~~L~i~~~~~~d~G~Y~C   80 (197)
T 3lcy_A            7 APGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELI-QSRKYKMSSDG-----RTHTLTVMTEEQEDEGVYTC   80 (197)
T ss_dssp             EEEEEECCCCEEEETTSEEEEEEEEEEESCCEEEEEETTEEEC-CCSSEEEEESS-----SEEEEEEECCSGGGCEEEEE
T ss_pred             CCcccccCCceEEeCCCcEEEEEEEecCCCCEEEEEECCEECC-CCccEEEEeCC-----CEEEEEEecCCccCCEEEEE
Confidence            3666677777889999999999999998889999999865543 33444433211     23579999999999999999


Q ss_pred             EEecCCCceEEEEE
Q psy4613          81 IAKNSLGEVESSIR   94 (96)
Q Consensus        81 ~~~~~~g~~~~~~~   94 (96)
                      .+.+..|.......
T Consensus        81 ~~~n~~~~~~~~~~   94 (197)
T 3lcy_A           81 IATNEVGEVETSSK   94 (197)
T ss_dssp             EEECSSCEEEEEEE
T ss_pred             EEECCCCceeEEEE
Confidence            99998887655543

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}

Probab=99.57  E-value=2.2e-13  Score=72.80  Aligned_cols=90  Identities=22%  Similarity=0.352  Sum_probs=69.2

Q ss_pred             CCeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEE
Q psy4613           1 HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKC   80 (96)
Q Consensus         1 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c   80 (96)
                      +|.+...+..+.+..|+.+.|.|.+.+.|.+.+.|++++..+.....++.......    ....|.|.+++..|.|.|.|
T Consensus         4 ~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~----~~~~L~i~~v~~~d~G~Y~C   79 (305)
T 2nzi_A            4 APHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKG----GYHQLIIASVTDDDATVYQV   79 (305)
T ss_dssp             CCEEEECCCCEEECTTCCEEEEEEEECSSCCEEEEEETTEECCCCSSSEEEEEETT----TEEEEEESSCCGGGCSEEEE
T ss_pred             CCeeeecccceEEeCCCcEEEEEEEeCCCCCeEEEEECCEEcccCCCeEEEEECCC----CEEEEEEccCChhhCeEEEE
Confidence            57777777888899999999999999999999999998766543333444332111    23579999999999999999


Q ss_pred             EEecCCCceEEEEE
Q psy4613          81 IAKNSLGEVESSIR   94 (96)
Q Consensus        81 ~~~~~~g~~~~~~~   94 (96)
                      .+.|..|.......
T Consensus        80 ~a~n~~g~~~~~~~   93 (305)
T 2nzi_A           80 RATNQGGSVSGTAS   93 (305)
T ss_dssp             EEEETTEEEEEEEE
T ss_pred             EEEcCCCCccceEE
Confidence            99998887655544

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.57  E-value=2.1e-14  Score=65.79  Aligned_cols=78  Identities=15%  Similarity=0.264  Sum_probs=60.1

Q ss_pred             cCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCC
Q psy4613           7 PNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSL   86 (96)
Q Consensus         7 ~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~   86 (96)
                      ++..+.+..|..+.|.|.+.+.+ +.+.|++++..+. ...++.+.         ...|.|.++...|.|.|.|.+.|..
T Consensus         9 ~p~~~~v~~G~~v~L~C~~~g~p-p~i~W~k~g~~~~-~~~~~~~~---------~~~L~i~~v~~~D~G~Y~C~a~n~~   77 (99)
T 2cr3_A            9 EVESFLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLA-ESNRTRIT---------GEEVEVQDSVPADSGLYACVTSSPS   77 (99)
T ss_dssp             CEEECCBCTTSCEEEECCCCSSC-CEEEEEESSSBCC-CCSSEEEC---------SSEEEETTCCTTTCEEEEEEEEETT
T ss_pred             CCcCeEEeCCCcEEEEEEecCCC-CeEEEEECCEECC-CCCcEEEE---------CCEEEEccCCHHHCEEEEEEEEeCC
Confidence            34556788999999999999876 7999999875543 22333322         2479999999999999999999998


Q ss_pred             CceEEEEEe
Q psy4613          87 GEVESSIRL   95 (96)
Q Consensus        87 g~~~~~~~l   95 (96)
                      |.....+.|
T Consensus        78 g~~~~~~~l   86 (99)
T 2cr3_A           78 GSDTTYFSV   86 (99)
T ss_dssp             EEEEEEEEE
T ss_pred             ceEEEEEEE
Confidence            887666654

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}

Probab=99.57  E-value=3.4e-13  Score=68.72  Aligned_cols=84  Identities=18%  Similarity=0.300  Sum_probs=64.7

Q ss_pred             cCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCC
Q psy4613           7 PNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSL   86 (96)
Q Consensus         7 ~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~   86 (96)
                      .+....+..|..+.|.|.+.+.|.+.+.|++++..+. ...++......  .  ....|.|.++...|.|.|.|.+.|..
T Consensus       123 ~~~~~~v~~g~~~~l~C~~~g~p~p~v~W~~~~~~~~-~~~~~~~~~~~--~--~~~~L~i~~~~~~d~G~Y~C~a~N~~  197 (212)
T 2r15_A          123 LPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALA-QTDHCNLKFEA--G--RTAYFTINGVSTADSGKYGLVVKNKY  197 (212)
T ss_dssp             CCSEEEEETTCCEEEEEEEECSSCCEEEEEETTEEEC-CCSSEEEEEET--T--TEEEEEESSCCGGGCEEEEEEEEETT
T ss_pred             CCCcEEEccCCeEEEEEEEcCCCCceEEEEECCeECc-cCCCEEEEEcC--C--CEEEEEEcCcchHHCeEEEEEEEcCC
Confidence            3455678899999999999999999999999865543 33444443311  0  23589999999999999999999999


Q ss_pred             CceEEEEEe
Q psy4613          87 GEVESSIRL   95 (96)
Q Consensus        87 g~~~~~~~l   95 (96)
                      |.....+.|
T Consensus       198 g~~~~~~~l  206 (212)
T 2r15_A          198 GSETSDFTV  206 (212)
T ss_dssp             EEEEEEEEE
T ss_pred             CcEEEEEEE
Confidence            987766654

>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.56  E-value=9.3e-14  Score=65.50  Aligned_cols=90  Identities=16%  Similarity=0.144  Sum_probs=62.9

Q ss_pred             ecCceeeecCCCcEEEEEEeeec---ccceeEEeeccceeEe--cccceEEEEe-ccccceEEEEEEEccCCCCCCeeEE
Q psy4613           6 VPNQLVGAPIDTDVTLECYVEAY---PKSINYWVRDQGDMVI--SSERYEVESI-SRSIFDFKMRLTIKKITKYDLGSYK   79 (96)
Q Consensus         6 ~~~~~~~~~~g~~~~l~c~~~~~---~~~~~~w~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~l~i~~~~~~d~g~y~   79 (96)
                      ..+..+.+..|+.+.|.|.+.+.   |.|.+.|+++.-....  ...++.+... ..........|.|.++...|+|.|.
T Consensus        17 ~~P~~v~V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~   96 (118)
T 2edn_A           17 KKPDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFKESHNSASNVYTVELHIGKVVLGDRGYYR   96 (118)
T ss_dssp             BCCCCCEEETTSCEECCEEEETTTSSSCCCCEEEETTTCCCCCSTTSSCEEEEEECSSSCEEEEEEEESSCCTTTCSCEE
T ss_pred             ECCCCeEEeCCCCEEEEEEEeccCCCCCCcEEEeeCCEeccCCCCccEEEeccccccccccceEEEEEeeCChhhCEEEE
Confidence            34567789999999999999874   7889999996311111  1223333211 1111112478999999999999999


Q ss_pred             EEEecCCCceEEEEEe
Q psy4613          80 CIAKNSLGEVESSIRL   95 (96)
Q Consensus        80 c~~~~~~g~~~~~~~l   95 (96)
                      |.+.|..|...+.+.|
T Consensus        97 Cevsn~~g~~s~~~~L  112 (118)
T 2edn_A           97 LEVKAKDTCDSCGFNI  112 (118)
T ss_dssp             EEEECSSCEEEEEECC
T ss_pred             EEEEEcCCcEEEEEEE
Confidence            9999999987777654

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X

Probab=99.56  E-value=8.2e-13  Score=62.42  Aligned_cols=87  Identities=18%  Similarity=0.254  Sum_probs=59.4

Q ss_pred             cCceeeecCCCcEEEEEEeeecc--cceeEEeeccceeEe----cccceEEEEeccccceEEEEEEEccCCCCCCeeEEE
Q psy4613           7 PNQLVGAPIDTDVTLECYVEAYP--KSINYWVRDQGDMVI----SSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKC   80 (96)
Q Consensus         7 ~~~~~~~~~g~~~~l~c~~~~~~--~~~~~w~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c   80 (96)
                      ++..+.+..|+.+.|.|.+.+.+  .+.+.|++++.....    .........  .........|.|.+++..|+|.|.|
T Consensus        14 p~~~v~v~~G~~v~L~C~~~g~p~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~L~I~~v~~~DsG~Y~C   91 (122)
T 3s35_X           14 PSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSG--SEMKKFLSTLTIDGVTRSDQGLYTC   91 (122)
T ss_dssp             SCSCEEEEETCCEEEEEEEEECTTCCCEEEEECSCTTCCHHHHBCCSCCEEEE--TTEEEEEEEEEESSCCGGGCEEEEE
T ss_pred             CCCCEEEecCCeEEEEEEEEcCCCCcEEEEEECCCcccCCceeeeeccccccC--CceeeEEEEEEECCCCcccCEEEEE
Confidence            44555788999999999999844  467899987653210    111111100  0001134679999999999999999


Q ss_pred             EEecCCCceEEEEEe
Q psy4613          81 IAKNSLGEVESSIRL   95 (96)
Q Consensus        81 ~~~~~~g~~~~~~~l   95 (96)
                      .+.|..|.....+.|
T Consensus        92 ~a~n~~g~~~~~~~l  106 (122)
T 3s35_X           92 AASSGLMTKKNSTFV  106 (122)
T ss_dssp             EEECSSCEEEEEEEE
T ss_pred             EEccCCCceEEEEEE
Confidence            999999987766554

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A

Probab=99.56  E-value=1.3e-13  Score=69.43  Aligned_cols=87  Identities=23%  Similarity=0.265  Sum_probs=65.3

Q ss_pred             eEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEE
Q psy4613           3 VIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIA   82 (96)
Q Consensus         3 ~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~   82 (96)
                      .+...+....+..|..+.|.|.+.+.|.+.+.|++++..+. ...++......     ....|.|.++...|.|.|.|.+
T Consensus       105 ~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~-~~~~~~~~~~~-----~~~~L~i~~~~~~d~G~Y~C~a  178 (194)
T 2a38_A          105 NFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQ-SSLDFQISQEG-----DLYSLLIAEAYPEDSGTYSVNA  178 (194)
T ss_dssp             EEEECCCCEEECTTEEEEEEEEEEEESCCEEEEEETTEECC-CSSSEEEEEET-----TEEEEEEEEECGGGCEEEEEEE
T ss_pred             EEEeCCccEEEcCCCEEEEEEEEEEecCCeEEEEECCEECC-CCCcEEEEEcC-----CEEEEEECCCChhcCeEEEEEE
Confidence            33444455668889999999999999999999999876543 33444333211     2347899999999999999999


Q ss_pred             ecCCCceEEEEEe
Q psy4613          83 KNSLGEVESSIRL   95 (96)
Q Consensus        83 ~~~~g~~~~~~~l   95 (96)
                      .|..|.....+.|
T Consensus       179 ~n~~g~~~~~~~l  191 (194)
T 2a38_A          179 TNSVGRATSTAEL  191 (194)
T ss_dssp             EETTEEEEEEEEE
T ss_pred             EeCCCceEEEEEE
Confidence            9999987776655

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus}

Probab=99.56  E-value=3.3e-13  Score=62.57  Aligned_cols=87  Identities=18%  Similarity=0.382  Sum_probs=60.5

Q ss_pred             CCeEEecCceeeecCCCcEEEEEEeeecc--cceeEEeeccceeEecccceEEEEeccc---cceEEEEEEEccCCCCCC
Q psy4613           1 HPVIHVPNQLVGAPIDTDVTLECYVEAYP--KSINYWVRDQGDMVISSERYEVESISRS---IFDFKMRLTIKKITKYDL   75 (96)
Q Consensus         1 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~--~~~~~w~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~i~~~~~~d~   75 (96)
                      +|.+...+....+..|+.+.|.|.+.+.+  .+.+.|++++..+.. ............   .......|.|.++...|.
T Consensus        10 ~P~i~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~i~W~k~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~   88 (112)
T 3so5_A           10 XPQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQD-AEMENYAHLRAQGGELMEYTTILRLRNVEFTSE   88 (112)
T ss_dssp             SCEEEECCCCEEECTTCCEEEEEEEEESCCCCCEEEEEETTEECTT-CEEEEEEETTGGGSSCEEEEEEEEECSCCGGGC
T ss_pred             CCeEEeCCCCcEEECCCCEEEEEEEecCCCCCEEEEEccCCccccc-ccccceeeeeccCCCccccceEEEEeccccccC
Confidence            46777777777899999999999998654  578999998654421 110000110000   001246899999999999


Q ss_pred             eeEEEEEecCCCc
Q psy4613          76 GSYKCIAKNSLGE   88 (96)
Q Consensus        76 g~y~c~~~~~~g~   88 (96)
                      |.|.|.+.|..|.
T Consensus        89 G~Y~C~a~n~~g~  101 (112)
T 3so5_A           89 GXYQCVISNHFGS  101 (112)
T ss_dssp             EEEEEEEEETTEE
T ss_pred             CeEEEEEEeCCCc
Confidence            9999999998886

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.56  E-value=8e-14  Score=64.46  Aligned_cols=70  Identities=21%  Similarity=0.349  Sum_probs=53.2

Q ss_pred             ceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEec
Q psy4613           9 QLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKN   84 (96)
Q Consensus         9 ~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~   84 (96)
                      ..+.+..|+.+.|.|.+ +.+.+.+.|++++..+.....++.+....     ....|.|.++...|.|.|.|.+.+
T Consensus        24 ~~~~v~~G~~v~L~C~~-~~p~~~v~W~k~g~~l~~~~~~~~~~~~~-----~~~~L~I~~v~~~D~G~Y~C~a~~   93 (104)
T 1pd6_A           24 PAYQVSKGHKIRLTVEL-ADHDAEVKWLKNGQEIQMSGSKYIFESIG-----AKRTLTISQCSLADDAAYQCVVGG   93 (104)
T ss_dssp             SEEEEETTSCEEEEEEC-SSSSSCCEEEESSSEECCCSSSSEEEEET-----TEEEEEECSCSSSSCEEEEEEETT
T ss_pred             CcEEEecCCCEEEEEEE-cCCCCEEEEEECCEECCCCCCeEEEEecC-----CEEEEEECCCCcccCEEEEEEECC
Confidence            44778999999999999 67888999999876654221455443211     235899999999999999999854

>4hwu_A Fibroblast growth factor receptor 2; FGFR2, KGFR, CD332, IG-C2 type 1 domain, IG superfamily, IMM system, structural genomics, PSI-biology; 2.90A {Mus musculus}

Probab=99.55  E-value=8.9e-14  Score=63.16  Aligned_cols=77  Identities=18%  Similarity=0.274  Sum_probs=58.9

Q ss_pred             cCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCC
Q psy4613           7 PNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSL   86 (96)
Q Consensus         7 ~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~   86 (96)
                      ++....+..|+.+.|.|.+.+  .|.+.|++++..+. ...++...         ...|.|.++...|.|.|.|.+.|..
T Consensus         7 ~p~~~~v~~G~~~~l~C~~~~--~p~v~W~k~g~~~~-~~~~~~~~---------~~~L~i~~~~~~D~G~Y~C~a~n~~   74 (95)
T 4hwu_A            7 QPEAYVVAPGESLELQCMLKD--AAVISWTKDGVHLG-PNNRTVLI---------GEYLQIKGATPRDSGLYACTAARTV   74 (95)
T ss_dssp             -CEEEEECTTSCEEEECCCCT--TCEEEEEETTEEEC-CCSSEEEE---------TTEEEECSCCGGGCEEEEEEEECSS
T ss_pred             CCCcEEECCCCEEEEEEEeCC--CCEEEEEECCEECC-CCceEEEe---------CCEEEECcCCcccCEEEEEEEccCC
Confidence            456677899999999999886  57899999865543 33343332         2469999999999999999999999


Q ss_pred             CceEEEEEe
Q psy4613          87 GEVESSIRL   95 (96)
Q Consensus        87 g~~~~~~~l   95 (96)
                      |.....+.|
T Consensus        75 g~~~~~~~l   83 (95)
T 4hwu_A           75 DSETWIFMV   83 (95)
T ss_dssp             CEEEEEEEE
T ss_pred             CcEEEEEEE
Confidence            877666544

>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*

Probab=99.55  E-value=4.3e-14  Score=72.30  Aligned_cols=84  Identities=18%  Similarity=0.165  Sum_probs=56.2

Q ss_pred             EEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEec---ccceEEEEeccccceEEEEEEEccCCCCCCeeEEE
Q psy4613           4 IHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVIS---SERYEVESISRSIFDFKMRLTIKKITKYDLGSYKC   80 (96)
Q Consensus         4 ~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c   80 (96)
                      +...+....+..|+.+.|.|.+.|.|.|.+.|+++++.....   ..++....   +  +....+.+.+++..|.|.|.|
T Consensus       109 ~~~~~~~~~v~~g~~~~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~r~~~~~---~--g~l~il~i~~v~~~D~G~YtC  183 (203)
T 4fa8_A          109 LSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVMKEK---D--GSLSVAVDLSLPKPWHLPVTC  183 (203)
T ss_dssp             EEEEEEECCSSCSCCEEEEEEEEEESCCEEEECCC------------CCEECT---T--SCEEEEEEEEECSSCCCCEEE
T ss_pred             eeecceeEEEcCCCEEEEEEEcCCCCCCEEEEEECCeeecCcccccceEEEeC---C--CCEEEEEECCCCHHHCEEEEE
Confidence            333445566788999999999999999999998875544321   12222211   1  123456667899999999999


Q ss_pred             EEecCCCceEEE
Q psy4613          81 IAKNSLGEVESS   92 (96)
Q Consensus        81 ~~~~~~g~~~~~   92 (96)
                      .+.|..|.....
T Consensus       184 ~A~N~~G~a~~v  195 (203)
T 4fa8_A          184 VGKNDKEEAHGV  195 (203)
T ss_dssp             EEESSSCEEEEE
T ss_pred             EEEcCCCEEEEE
Confidence            999999987654

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A

Probab=99.55  E-value=2.5e-13  Score=68.38  Aligned_cols=89  Identities=25%  Similarity=0.328  Sum_probs=66.6

Q ss_pred             CCeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecc-cceEEEEeccccceEEEEEEEccCCCCCCeeEE
Q psy4613           1 HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISS-ERYEVESISRSIFDFKMRLTIKKITKYDLGSYK   79 (96)
Q Consensus         1 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~   79 (96)
                      +|.+..++....+..|+.+.|.|.+.+.+.+.+.|++++..+.... .+.......     ....|.|.+++..|.|.|.
T Consensus         5 ~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~-----~~~~L~i~~~~~~d~G~Y~   79 (194)
T 2a38_A            5 APTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSD-----GRAKLTIPAVTKANSGRYS   79 (194)
T ss_dssp             EEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEESSSBCCTTTSTTCEEEEET-----TEEEEEESSCCGGGCEEEE
T ss_pred             CCeEEccCCceEEECCCEEEEEEEEEecCCCEEEEEECCEEcccccCCceEEEeCC-----CEEEEEECCCCcccCEEEE
Confidence            3667777778889999999999999998989999999876543221 123322211     2467999999999999999


Q ss_pred             EEEecCCCceEEEEE
Q psy4613          80 CIAKNSLGEVESSIR   94 (96)
Q Consensus        80 c~~~~~~g~~~~~~~   94 (96)
                      |.+.+..|.......
T Consensus        80 C~~~n~~~~~~~~~~   94 (194)
T 2a38_A           80 LKATNGSGQATSTAE   94 (194)
T ss_dssp             EEEEETTEEEEEEEE
T ss_pred             EEEEcCCceEeEEEE
Confidence            999998876555443

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens}

Probab=99.55  E-value=6.7e-13  Score=62.00  Aligned_cols=73  Identities=15%  Similarity=0.253  Sum_probs=55.2

Q ss_pred             CeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEE
Q psy4613           2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCI   81 (96)
Q Consensus         2 p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~   81 (96)
                      |.+..++....+..|+.+.|.|.+.+.  |.+.|++++..+. ...++.+....     ....|.|.++...|.|.|.|.
T Consensus        20 p~~~~~~~~~~v~~G~~v~l~C~~~~~--p~v~W~k~~~~l~-~~~~~~~~~~~-----~~~~L~I~~v~~~D~G~Y~C~   91 (113)
T 2edh_A           20 IKFTEGLRNEEATEGATAVLRCELSKM--APVEWWKGHETLR-DGDRHSLRQDG-----ARCELQIRGLVAEDAGEYLCM   91 (113)
T ss_dssp             CCEEECCCCCEECTTSCEEEEEEESSC--CCCEEEESSSBCC-CSSSEEEEEET-----TEEEEEECSCCSTTCEEEEEE
T ss_pred             CcccccCCceEEeCCCeEEEEEEECCC--CcEEEEECCEECC-CCCcEEEEECC-----CEEEEEECCCChhhCEEEEEE
Confidence            455556667788999999999998664  7899999876553 34555544311     235799999999999999999


Q ss_pred             E
Q psy4613          82 A   82 (96)
Q Consensus        82 ~   82 (96)
                      +
T Consensus        92 a   92 (113)
T 2edh_A           92 C   92 (113)
T ss_dssp             E
T ss_pred             e
Confidence            8

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.55  E-value=5.9e-13  Score=66.68  Aligned_cols=89  Identities=21%  Similarity=0.357  Sum_probs=65.5

Q ss_pred             CeEEecCceeeecCCCcEEEEEEeeecc-cceeEEee---ccceeEec--ccceEEEEeccccceEEEEEEEccCC-CCC
Q psy4613           2 PVIHVPNQLVGAPIDTDVTLECYVEAYP-KSINYWVR---DQGDMVIS--SERYEVESISRSIFDFKMRLTIKKIT-KYD   74 (96)
Q Consensus         2 p~~~~~~~~~~~~~g~~~~l~c~~~~~~-~~~~~w~~---~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d   74 (96)
                      |.+...+....+..|..+.|.|.+.+.| .+.+.|++   ++......  ..++.+....     ....|.|.++. ..|
T Consensus        84 P~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~L~i~~v~~~~d  158 (184)
T 3b5h_A           84 PRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQ-----GRSELHIENLNMEAD  158 (184)
T ss_dssp             CCCEESCSEEEECTTSCEEEEEECCCSSCCCEEEEEECCSSSCEECCTTGGGTEEEEEET-----TEEEEEECSCCTTTS
T ss_pred             CceeecCCCcEEcCCCcEEEEEEECCCCCCCeEEEEEcCCCCCEEeecCCCCEEEEEecC-----CeeEEEEeecccccc
Confidence            4444455556788899999999999988 78999999   44443322  2344433211     23679999999 899


Q ss_pred             CeeEEEEEecCCCceEEEEEe
Q psy4613          75 LGSYKCIAKNSLGEVESSIRL   95 (96)
Q Consensus        75 ~g~y~c~~~~~~g~~~~~~~l   95 (96)
                      .|.|.|.+.|..|.....+.|
T Consensus       159 ~G~Y~C~a~N~~g~~~~~~~l  179 (184)
T 3b5h_A          159 PGQYRCNGTSSKGSDQAIITL  179 (184)
T ss_dssp             SEEEEEEEEETTEEEEEEEEE
T ss_pred             CceEEEEEEeCCCcceEEEEE
Confidence            999999999999988777655

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*

Probab=99.55  E-value=7.2e-14  Score=77.05  Aligned_cols=83  Identities=24%  Similarity=0.428  Sum_probs=65.3

Q ss_pred             eEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEE
Q psy4613           3 VIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIA   82 (96)
Q Consensus         3 ~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~   82 (96)
                      .+........+..|..+.|.|.+.+.|.|.+.|++++..+. ...++...         ...|.|..+...|.|.|.|.+
T Consensus       297 ~~~~~~~~~~v~~g~~v~l~C~~~g~P~p~i~W~k~g~~l~-~~~~~~~~---------~~~L~i~~v~~~D~G~Y~C~A  366 (384)
T 3kld_A          297 NWVQIINDIHVAMEESVFWECKANGRPKPTYRWLKNGDPLL-TRDRIQIE---------QGTLNITIVNLSDAGMYQCVA  366 (384)
T ss_dssp             EEEECCCCEEECTTCCEEEECEEEEESCCEEEEEETTEECC-CBTTEEEE---------TTEEEESSCCGGGCEEEEEEE
T ss_pred             ccccCCCceEecCCCCEEEEeECCccCCCeEEEEECCEECC-CCccEEEe---------CCEEEEeecChhhCEEEEEEE
Confidence            33344455678889999999999999999999999876553 33444332         247899999999999999999


Q ss_pred             ecCCCceEEEEEe
Q psy4613          83 KNSLGEVESSIRL   95 (96)
Q Consensus        83 ~~~~g~~~~~~~l   95 (96)
                      .|..|.......|
T Consensus       367 ~N~~G~~~~~a~L  379 (384)
T 3kld_A          367 ENKHGVIFSSAEL  379 (384)
T ss_dssp             EETTEEEEEEEEE
T ss_pred             EeCCceEEeceEE
Confidence            9999988777655

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A

Probab=99.55  E-value=2.6e-13  Score=69.43  Aligned_cols=89  Identities=20%  Similarity=0.326  Sum_probs=65.6

Q ss_pred             CCeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCC-CCCCeeEE
Q psy4613           1 HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKIT-KYDLGSYK   79 (96)
Q Consensus         1 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~g~y~   79 (96)
                      +|.+...+....+..|+.+.|.|.+.+.|.+.+.|++++..+.  ..+.........   ....|.|.++. ..|.|.|.
T Consensus         6 ~P~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~v~W~k~~~~~~--~~~~~~~~~~~~---~~~~L~i~~v~~~~d~G~Y~   80 (212)
T 2yd6_A            6 PPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVS--NQRFEVIEFDDG---SGSVLRIQPLRTPRDEAIYE   80 (212)
T ss_dssp             EEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECC--CTTEEEEEEGGG---TEEEEEECSCCTTTTCEEEE
T ss_pred             CCeEEeCcceeEEecCCeEEEEEEEeeCCCCEEEEEECCcCCC--CCceeEEEEcCC---CceEEEEeccCCCCCCeEEE
Confidence            3667777777889999999999999998999999999876543  222222211111   23679999994 99999999


Q ss_pred             EEEecCCCceEEEEE
Q psy4613          80 CIAKNSLGEVESSIR   94 (96)
Q Consensus        80 c~~~~~~g~~~~~~~   94 (96)
                      |.+.+..|.....+.
T Consensus        81 C~a~n~~g~~~~~~~   95 (212)
T 2yd6_A           81 CVASNNVGEISVSTR   95 (212)
T ss_dssp             EEEEETTEEEEEEEE
T ss_pred             EEEEcCCCcEEEEEE
Confidence            999998887555443

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A

Probab=99.55  E-value=2.4e-13  Score=72.00  Aligned_cols=86  Identities=24%  Similarity=0.453  Sum_probs=65.4

Q ss_pred             EEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEe
Q psy4613           4 IHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAK   83 (96)
Q Consensus         4 ~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~   83 (96)
                      +...+....+..|..+.|.|.+.+.|.+.+.|++++..+. ...++......     ....|.|.++...|.|.|.|.+.
T Consensus       195 ~~~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~~~~~~~~-~~~~~~~~~~~-----~~~~L~i~~v~~~d~G~Y~C~a~  268 (284)
T 2rik_A          195 FRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELR-SGKKYKIMSEN-----FLTSIHILNVDSADIGEYQCKAS  268 (284)
T ss_dssp             CCSCCCCEEECTTCCEEEEEECBSSSCCEEEEEETTEEEC-BTTTEEEEEET-----TEEEEEECSCCGGGCEEEEEEEE
T ss_pred             ceeCCCcceecCCCeEEEEEEEEecCCCEEEEEECCEECc-CCCCEEEEEcC-----CEEEEEEcCCCcccCEEEEEEEE
Confidence            3334445667889999999999999999999999876553 33444433211     23578999999999999999999


Q ss_pred             cCCCceEEEEEe
Q psy4613          84 NSLGEVESSIRL   95 (96)
Q Consensus        84 ~~~g~~~~~~~l   95 (96)
                      |..|.....+.|
T Consensus       269 N~~G~~~~~~~l  280 (284)
T 2rik_A          269 NDVGSYTCVGSI  280 (284)
T ss_dssp             ETTEEEEEEEEE
T ss_pred             eCCCceeEEEEE
Confidence            999988777655

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A

Probab=99.54  E-value=6.1e-13  Score=70.48  Aligned_cols=88  Identities=24%  Similarity=0.398  Sum_probs=67.8

Q ss_pred             CCeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEE
Q psy4613           1 HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKC   80 (96)
Q Consensus         1 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c   80 (96)
                      +|.+...+..+.+..|+.+.|.|.+.+.|.+.+.|++++..+. ...++......     ....|.|.+++..|.|.|.|
T Consensus         5 pP~~~~~p~~~~~~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~-~~~~~~~~~~~-----~~~~L~i~~v~~~d~G~Y~C   78 (284)
T 2rik_A            5 PPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIR-PGGNYKMTLVE-----NTATLTVLKVTKGDAGQYTC   78 (284)
T ss_dssp             CCEEEECCCCEEEETTCCEEEEEEEESSSCCEEEEEETTEECC-SSSSEEEEEET-----TEEEEEESSCCGGGCEEEEE
T ss_pred             CCEEEccccceEecCCCcEEEEEEEEcCCCCEEEEEECCEECc-CCCcEEEEEcC-----CEEEEEEecCCcccCEEEEE
Confidence            5777777788889999999999999998889999999876543 33343332211     24679999999999999999


Q ss_pred             EEecCCCceEEEEE
Q psy4613          81 IAKNSLGEVESSIR   94 (96)
Q Consensus        81 ~~~~~~g~~~~~~~   94 (96)
                      .+.+..|.......
T Consensus        79 ~~~n~~g~~~~~~~   92 (284)
T 2rik_A           79 YASNVAGKDSCSAQ   92 (284)
T ss_dssp             EEEETTEEEEEEEE
T ss_pred             EEEECCceEEEEEE
Confidence            99998876554443

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.54  E-value=1.1e-13  Score=63.68  Aligned_cols=74  Identities=22%  Similarity=0.320  Sum_probs=56.1

Q ss_pred             EEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEeccc--ceEEEEeccccceEEEEEEEccCCCCCCeeEEEE
Q psy4613           4 IHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSE--RYEVESISRSIFDFKMRLTIKKITKYDLGSYKCI   81 (96)
Q Consensus         4 ~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~   81 (96)
                      +..++..+.+..|+.+.|.|.+.+ +.+.+.|++++..+. ...  ++.+....     ....|.|.++...|.|.|.|.
T Consensus        10 ~~~~~~~~~v~~G~~v~l~C~~~~-~~~~v~W~k~g~~l~-~~~~~~~~~~~~~-----~~~~L~I~~~~~~D~G~Y~C~   82 (103)
T 1x44_A           10 VTKQLEDTTAYCGERVELECEVSE-DDANVKWFKNGEEII-PGPKSRYRIRVEG-----KKHILIIEGATKADAAEYSVM   82 (103)
T ss_dssp             CSBCCCCEEEETTEEEEEEEECSS-SSCCCEEEETTEECC-CSTTCSEEEEEET-----TEEEEEEEEECTTTCSEEEEE
T ss_pred             eeccCCCEEEECCCCEEEEEEecC-CCCeEEEEECCEECC-CCCceEEEEEEcC-----CEEEEEECCCCcccCEEEEEE
Confidence            445556678899999999999977 678999999876553 223  44443311     236799999999999999999


Q ss_pred             Eec
Q psy4613          82 AKN   84 (96)
Q Consensus        82 ~~~   84 (96)
                      +.|
T Consensus        83 a~n   85 (103)
T 1x44_A           83 TTG   85 (103)
T ss_dssp             ETT
T ss_pred             ECC
Confidence            987

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.54  E-value=3.8e-14  Score=65.56  Aligned_cols=76  Identities=16%  Similarity=0.191  Sum_probs=56.6

Q ss_pred             eEEecCceeeecCCCcEEEEEEeeecccc-eeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEE
Q psy4613           3 VIHVPNQLVGAPIDTDVTLECYVEAYPKS-INYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCI   81 (96)
Q Consensus         3 ~~~~~~~~~~~~~g~~~~l~c~~~~~~~~-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~   81 (96)
                      .+..++....+..|+.+.|.|.+.+.+.+ .+.|++++..+. ...++.+....     ....|.|.++...|+|.|.|.
T Consensus        10 ~~~~~~~~~~v~~G~~v~l~C~v~~~~~~~~v~W~k~g~~i~-~~~r~~~~~~~-----~~~~L~I~~v~~~D~G~Y~C~   83 (104)
T 2eny_A           10 GITKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVG-SSSRFQATRQG-----RKYILVVREAAPSDAGEVVFS   83 (104)
T ss_dssp             CCSBCCCCEEEESSCCEEEEEECSSCCCSSCBCCBSSSSBCS-BCSSCEEEEET-----TEEEEEECSCCTTTCSCEEEE
T ss_pred             EEEecCCCcEEcCCCcEEEEEEEcCCCCCceeEEEECCEECC-CCCCEEEEEcC-----CEEEEEECCCCHHHCEEEEEE
Confidence            34455567789999999999999887644 799999876553 33455443311     245799999999999999998


Q ss_pred             Eec
Q psy4613          82 AKN   84 (96)
Q Consensus        82 ~~~   84 (96)
                      +.+
T Consensus        84 a~~   86 (104)
T 2eny_A           84 VRG   86 (104)
T ss_dssp             ETT
T ss_pred             ECC
Confidence            755

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.54  E-value=2.6e-14  Score=65.67  Aligned_cols=79  Identities=15%  Similarity=0.228  Sum_probs=59.4

Q ss_pred             CCeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecc-c--ceEEEEeccccceEEEEEEEccCCCCCCee
Q psy4613           1 HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISS-E--RYEVESISRSIFDFKMRLTIKKITKYDLGS   77 (96)
Q Consensus         1 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~   77 (96)
                      +|.+..++....+..|+.+.|.|.+.+.+ +.+.|++++..+.... .  ++.+....     ....|.|.++...|.|.
T Consensus         8 p~~~~~~~~~~~v~~G~~v~l~C~~~~~~-~~v~W~k~g~~i~~~~~~~~~~~~~~~~-----~~~~L~I~~~~~~D~G~   81 (101)
T 2edk_A            8 PVLIVTPLEDQQVFVGDRVEMAVEVSEEG-AQVMWMKNGVELTREDSFKARYRFKKDG-----KRHILIFSDVVQEDRGR   81 (101)
T ss_dssp             CCCEEECCCCEEEESSCCCBCCEEESCSS-CCCEEEESSCBCCCSCCSSCCCEEEECS-----SEEEEECSSCCGGGCSB
T ss_pred             CCEEEecCCceEEcCCCCEEEEEEEeCCC-CEEEEEECCEECCCCCCcceeEEEEECC-----CEEEEEECCCChhhCEE
Confidence            35566666778899999999999999888 9999999876553221 1  33443211     24679999999999999


Q ss_pred             EEEEEecC
Q psy4613          78 YKCIAKNS   85 (96)
Q Consensus        78 y~c~~~~~   85 (96)
                      |.|.+.|.
T Consensus        82 Y~C~a~n~   89 (101)
T 2edk_A           82 YQVITNGG   89 (101)
T ss_dssp             EEEECSSC
T ss_pred             EEEEEcCC
Confidence            99998873

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4

Probab=99.54  E-value=5.6e-13  Score=62.72  Aligned_cols=77  Identities=26%  Similarity=0.292  Sum_probs=56.6

Q ss_pred             CcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCceEEEEEe
Q psy4613          17 TDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL   95 (96)
Q Consensus        17 ~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~~~~~~l   95 (96)
                      ....+.|.+.|.|.|.+.|++++..+. ...+........ .......|.|.++...|.|.|.|.+.|..|.....+.|
T Consensus        21 ~~~~l~C~~~g~P~p~i~W~k~g~~l~-~~~~~~~~~~~~-~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l   97 (118)
T 1wwc_A           21 LEHCIEFVVRGNPPPTLHWLHNGQPLR-ESKIIHVEYYQE-GEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTING   97 (118)
T ss_dssp             CEEEEEEEEECSSCCEEEEEETTEECC-CSSSEEEEEEEC-SSEEEEEEEEESCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred             cceEEEEEeeeeCCCeEEEEECCEECC-CCCceeEEEecc-CccccEEEEECCCChhcCEEEEEEEECCCCeEeeEEEE
Confidence            567889999999999999999876554 223333221111 01134689999999999999999999999988877664

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A

Probab=99.53  E-value=1.8e-13  Score=62.99  Aligned_cols=75  Identities=13%  Similarity=0.272  Sum_probs=56.7

Q ss_pred             CeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEE
Q psy4613           2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCI   81 (96)
Q Consensus         2 p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~   81 (96)
                      |.+..++..+.+..|+.+.|.|.+.+.+.+ +.|++++..+. ...++.+....     ....|.|.+++..|.|.|.|.
T Consensus         9 p~~~~~~~~~~v~~G~~v~l~C~~~~~p~~-v~W~k~~~~l~-~~~~~~~~~~~-----~~~~L~I~~v~~~D~G~Y~C~   81 (103)
T 2e7b_A            9 VRFQEALKDLEVLEGGAATLRCVLSSVAAP-VKWCYGNNVLR-PGDKYSLRQEG-----AMLELVVRNLRPQDSGRYSCS   81 (103)
T ss_dssp             CCCTBCCCCEEEESSSCEEEEEECSSCCCS-CEEEESSSBCC-CSSSEEEEECS-----SEEEEEECSCCTTTCCCEEEE
T ss_pred             CEEEecCccEEEECCCcEEEEEEEeCCCCC-eEEEECCEECC-CCCcEEEEEcC-----CEEEEEEccCCcccCEEEEEE
Confidence            445555667789999999999999998888 99999866553 33455444321     345799999999999999998


Q ss_pred             Ee
Q psy4613          82 AK   83 (96)
Q Consensus        82 ~~   83 (96)
                      ..
T Consensus        82 ~g   83 (103)
T 2e7b_A           82 FG   83 (103)
T ss_dssp             CS
T ss_pred             EC
Confidence            43

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens}

Probab=99.53  E-value=1.4e-14  Score=68.10  Aligned_cols=89  Identities=24%  Similarity=0.310  Sum_probs=58.6

Q ss_pred             CCeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEeccc--ceEEEEeccccceEEEEEEEccCCCCCCeeE
Q psy4613           1 HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSE--RYEVESISRSIFDFKMRLTIKKITKYDLGSY   78 (96)
Q Consensus         1 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y   78 (96)
                      +|.+...+....+..|+.+.|.|.+.+.|.|.+.|++++..+.....  +....... +.......+.+.++...|.|.|
T Consensus         9 pP~i~~~p~~~~v~~G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~v~~~D~G~Y   87 (117)
T 2v9t_A            9 PPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLP-SGSLFFLRIVHGRKSRPDEGVY   87 (117)
T ss_dssp             EEEEEECCCCEEECTTCCEEECCEEEEESCCEEEEEETTEECCCTTTCSSCSEEECT-TSCEEESSCCCBTTBCSSCEEE
T ss_pred             CCeeEcCCCCEEEcCCCcEEEEEECCccCCCeEEEEECCEeccccCCCCcceeEEec-CCcEEEEEEEeCCCCcCcCEEE
Confidence            36677777778899999999999999999999999998765432211  11111101 1100011122225578999999


Q ss_pred             EEEEecCCCceE
Q psy4613          79 KCIAKNSLGEVE   90 (96)
Q Consensus        79 ~c~~~~~~g~~~   90 (96)
                      .|.+.|..|...
T Consensus        88 ~C~a~N~~G~~~   99 (117)
T 2v9t_A           88 VCVARNYLGEAV   99 (117)
T ss_dssp             EEEEEETTEEEE
T ss_pred             EEEEEeCccceE
Confidence            999999998754

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}

Probab=99.53  E-value=4.1e-13  Score=77.31  Aligned_cols=87  Identities=31%  Similarity=0.516  Sum_probs=68.2

Q ss_pred             CCeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEE
Q psy4613           1 HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKC   80 (96)
Q Consensus         1 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c   80 (96)
                      +|.+..+...+.+..|+.+.|.|.+.+.|.+.+.|++++..+. ...++......     ....|.|.++...|.|.|.|
T Consensus         5 pP~f~~~~~~~~v~~G~~v~L~C~~~g~p~~~v~W~k~g~~l~-~~~~~~~~~~~-----~~~~L~I~~v~~~D~G~Y~C   78 (570)
T 3b43_A            5 PPYFIEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLR-SAPAYKMQFKN-----NVASLVINKVDHSDVGEYTC   78 (570)
T ss_dssp             CCEEEECCCCEEECTTSCEEEEEEEESSSSCEEEEECSSSBCC-CCSSEEEECCT-----TEEEEEESSCCGGGCEEEEE
T ss_pred             CCcceEECCceEEcCCCEEEEEEEEccCCCCEEEEEECCEEcc-CCCCEEEEEEC-----CEEEEEEccCChhhCEEEEE
Confidence            5777778888889999999999999999999999999876653 23344332211     23679999999999999999


Q ss_pred             EEecCCCceEEEE
Q psy4613          81 IAKNSLGEVESSI   93 (96)
Q Consensus        81 ~~~~~~g~~~~~~   93 (96)
                      .+.|..|......
T Consensus        79 ~a~N~~g~~~~~~   91 (570)
T 3b43_A           79 KAENSVGAVASSA   91 (570)
T ss_dssp             EEEETTEEEEEEE
T ss_pred             EEEeCCceEEEEE
Confidence            9999988655443

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}

Probab=99.53  E-value=3.9e-13  Score=77.42  Aligned_cols=89  Identities=20%  Similarity=0.304  Sum_probs=68.5

Q ss_pred             CeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEE
Q psy4613           2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCI   81 (96)
Q Consensus         2 p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~   81 (96)
                      |.+........+..|..+.|.|.+.+.|.+.+.|++++..+.....+..+....     ....|.|..+...|+|.|.|.
T Consensus       478 P~~~~~~~~~~~~~g~~~~l~c~~~g~p~~~v~W~k~~~~~~~~~~~~~~~~~~-----~~~~L~i~~~~~~d~G~Y~C~  552 (570)
T 3b43_A          478 PRFVKKLSDISTVVGEEVQLQATIEGAEPISVAWFKDKGEIVRESDNIWISYSE-----NIATLQFSRAEPANAGKYTCQ  552 (570)
T ss_dssp             CEEEECCCCBCCBTTCCEEEEEEEESCSSCCCEEEETTEECCCCTTTEEECCCS-----SEEEEEESSCCTTCCEEEEEE
T ss_pred             CcccccCCCceecCCCeEEEEEEEecCCCCEEEEEeCCeEeccCCCeEEEEECC-----CEEEEEECcCCHHHCEEEEEE
Confidence            555555556677889999999999999999999999865554333443332111     246899999999999999999


Q ss_pred             EecCCCceEEEEEe
Q psy4613          82 AKNSLGEVESSIRL   95 (96)
Q Consensus        82 ~~~~~g~~~~~~~l   95 (96)
                      +.|..|...+...|
T Consensus       553 a~N~~G~~~~~a~L  566 (570)
T 3b43_A          553 IKNEAGTQECFATL  566 (570)
T ss_dssp             EECSSCEEEEEEEE
T ss_pred             EEECCcEEEEEEEE
Confidence            99999998887766

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*

Probab=99.53  E-value=2.2e-12  Score=68.45  Aligned_cols=90  Identities=14%  Similarity=0.222  Sum_probs=65.8

Q ss_pred             CeEEecCceeeecCCCcEEEEEEeee-cccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEE
Q psy4613           2 PVIHVPNQLVGAPIDTDVTLECYVEA-YPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKC   80 (96)
Q Consensus         2 p~~~~~~~~~~~~~g~~~~l~c~~~~-~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c   80 (96)
                      |.+...+....+..|..+.|.|.+.+ .|.+.+.|++++..+... ...   ............|.|.++...|.|.|.|
T Consensus       187 p~i~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~-~~~---~~~~~~~~~~~~L~i~~v~~~d~G~Y~C  262 (289)
T 3ejj_X          187 PQIKLEPSKLVRIRGEAAQIVCSATNAEVGFNVILKRGDTKLEIP-LNS---DFQDNYYKKVRALSLNAVDFQDAGIYSC  262 (289)
T ss_dssp             CEEEEESSSEECCSSSCEEEEEEEEESSSCCEEEEEETTEECCCC-EEE---EECSSSEEEEEEEEESSCCSSSCEEEEE
T ss_pred             CeEEecCCceEEEeCCcEEEEEEeCCCCCceEEEEEECCEEeecc-CCc---ccccceEEeeEEEEEEeecccCCEEEEE
Confidence            44555555556678999999999998 688899999986554211 110   0011111235789999999999999999


Q ss_pred             EEecCCCceEEEEEe
Q psy4613          81 IAKNSLGEVESSIRL   95 (96)
Q Consensus        81 ~~~~~~g~~~~~~~l   95 (96)
                      .+.|..|....++.|
T Consensus       263 ~a~N~~G~~~~s~~L  277 (289)
T 3ejj_X          263 VASNDVGTRTATMNF  277 (289)
T ss_dssp             EEECSSCEEEEEEEE
T ss_pred             EEEcCCCCccccEEE
Confidence            999999999888876

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}

Probab=99.52  E-value=7.6e-13  Score=70.31  Aligned_cols=86  Identities=15%  Similarity=0.176  Sum_probs=60.4

Q ss_pred             ceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCc
Q psy4613           9 QLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGE   88 (96)
Q Consensus         9 ~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~   88 (96)
                      ....+..|+.+.|.|.+.+.|.+.+.|++++.......... ..............|.|.++...|.|.|.|.+.|..|.
T Consensus       189 ~~~~v~~G~~v~L~C~~~g~p~p~v~W~~~~~~~~~~~~~~-~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~  267 (289)
T 3mjg_X          189 VQTVVRQGENITLMCIVIGNEVVNFEWTYPRKESGRLVEPV-TDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVND  267 (289)
T ss_dssp             SCSEEETTSCEEEEEEEESCSSBEEEEECTTSSSSCCCCCE-EEESCTTTTEEEEEEEESSCCSSCCEEEEEEEEETTTT
T ss_pred             CcceeEcCCCEEEEEEECCCCCcceEEEcCCccCCCccccc-ccccCCcceEEEEEEEEcccChhhCcEEEEEeecCCCC
Confidence            33557889999999999999999999997643321111111 11111101224578999999999999999999999998


Q ss_pred             eEEEEEe
Q psy4613          89 VESSIRL   95 (96)
Q Consensus        89 ~~~~~~l   95 (96)
                      ......|
T Consensus       268 ~~~~~~l  274 (289)
T 3mjg_X          268 HQDEKAI  274 (289)
T ss_dssp             EEEEEEE
T ss_pred             ceeEEEE
Confidence            7776654

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A

Probab=99.52  E-value=1.1e-13  Score=70.72  Aligned_cols=81  Identities=28%  Similarity=0.506  Sum_probs=62.9

Q ss_pred             CeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEE
Q psy4613           2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCI   81 (96)
Q Consensus         2 p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~   81 (96)
                      |.+...+....+..|..+.|.|.+.+.|.+.+.|++++..+.....++...         ...|.|.++...|.|.|.|.
T Consensus       111 p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~---------~~~L~i~~v~~~d~G~Y~C~  181 (212)
T 2yd1_A          111 PVITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLK---------DGFLQIENSREEDQGKYECV  181 (212)
T ss_dssp             CEEEECCCCEEEETTCCEEECCEEECSSCCEEEEEETTEECCTTSTTEEEE---------TTEEEECSCCGGGCEEEEEE
T ss_pred             CeeEeCCCceEeecCCeEEEEEEeccCCCCeEEEEECCeEcccCCCeEEcc---------CCeEEEccCChhhCEEEEEE
Confidence            455555556677889999999999999999999999876554323343322         24799999999999999999


Q ss_pred             EecCCCceEE
Q psy4613          82 AKNSLGEVES   91 (96)
Q Consensus        82 ~~~~~g~~~~   91 (96)
                      +.|..|....
T Consensus       182 a~N~~G~~~s  191 (212)
T 2yd1_A          182 AENSMGTEHS  191 (212)
T ss_dssp             EEETTEEEEC
T ss_pred             eecCCCceeE
Confidence            9999987653

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.52  E-value=6.5e-15  Score=67.10  Aligned_cols=72  Identities=25%  Similarity=0.331  Sum_probs=56.0

Q ss_pred             CeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEE
Q psy4613           2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCI   81 (96)
Q Consensus         2 p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~   81 (96)
                      |.+...+....+..|..+.|.|.+.+.|.+.+.|++++..+...               ....|.|.++...|.|.|.|.
T Consensus        11 ~~i~~~p~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~~~~~~~~---------------~~~~L~i~~v~~~d~G~Y~C~   75 (96)
T 2ens_A           11 VQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLP---------------PSPVLILPEIGPQDQGTYSCV   75 (96)
T ss_dssp             CCCEEESTTSEECTTCEEEEECCCSSCSSCCCCCEESSSBCSSC---------------CCSEEEEESCCTTTCEEEECE
T ss_pred             CEEEECCCCCEEcCCCeEEEEEEEccCCCCEEEEEECCEECcCC---------------CCCEEEECCCCcccCEEEEEE
Confidence            34445555566889999999999999899999999986544211               124688999999999999999


Q ss_pred             EecCCCc
Q psy4613          82 AKNSLGE   88 (96)
Q Consensus        82 ~~~~~g~   88 (96)
                      +.|..+.
T Consensus        76 a~n~~~~   82 (96)
T 2ens_A           76 ATHSSHG   82 (96)
T ss_dssp             ECCSSCC
T ss_pred             EEeCCCC
Confidence            9996553

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}

Probab=99.51  E-value=1.2e-13  Score=69.47  Aligned_cols=80  Identities=33%  Similarity=0.530  Sum_probs=62.4

Q ss_pred             CeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEE
Q psy4613           2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCI   81 (96)
Q Consensus         2 p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~   81 (96)
                      |.+..++..+.+..|+.+.|.|.+.+.+.+.+.|++++..+.....++.....       ...|.|.+++..|.|.|.|.
T Consensus         8 P~i~~~~~~~~~~~G~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~-------~~~L~i~~~~~~d~G~Y~C~   80 (192)
T 2iep_A            8 PVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIREN-------GQLLTILSVEDSDDGIYCCT   80 (192)
T ss_dssp             EEESSCCCEEEEETTSCEEEECCEEEESCCEEEEEETTEECCTTCTTEEEEGG-------GTEEEESSCCGGGCEEEEEE
T ss_pred             ceeecCccceeeeCCCcEEEEeeCCCCCCCeEEEEECCEEccccCccEEEcCC-------ccEEEEcCCCcccCeEEEEE
Confidence            56666677788899999999999999888999999986655433344443321       13689999999999999999


Q ss_pred             EecCCCc
Q psy4613          82 AKNSLGE   88 (96)
Q Consensus        82 ~~~~~g~   88 (96)
                      +.+..|.
T Consensus        81 ~~~~~~~   87 (192)
T 2iep_A           81 ANNGVGG   87 (192)
T ss_dssp             EECSSSC
T ss_pred             EEcCCCc
Confidence            9998776

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}

Probab=99.51  E-value=2.6e-12  Score=68.31  Aligned_cols=92  Identities=20%  Similarity=0.316  Sum_probs=65.4

Q ss_pred             CeEEecCceeeecCCCcEEEEEEeeecccce-eEEeecccee---EecccceEEEEeccccceEEEEEEEccCCCCCCee
Q psy4613           2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSI-NYWVRDQGDM---VISSERYEVESISRSIFDFKMRLTIKKITKYDLGS   77 (96)
Q Consensus         2 p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~-~~w~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~   77 (96)
                      |.+...+....+..|+.+.|.|.+.+.|.+. +.|++++...   ...........  .........|.|.++...|.|.
T Consensus       189 P~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~~i~W~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~L~I~~v~~~d~G~  266 (290)
T 2o26_X          189 PVVSVPETSHLLKKGDTFTVVCTIKDVSTSVNSMWLKMNPQPQHIAQVKHNSWHRG--DFNYERQETLTISSARVDDSGV  266 (290)
T ss_dssp             CEEECSCSBCCCCTTCCEEEEEEEEESSTTCEEEEEEESSSEEECCCEECCEEEEE--TTEEEEEEEEEESSCCSSSCEE
T ss_pred             CccccCCCcceEecCCcEEEEEEEecCCcceeEEEecCCCCCccceeecccccccC--ceeeEEEEEEEEcCCCcccCeE
Confidence            4555455555788899999999999999986 9999987653   11111111110  0011145789999999999999


Q ss_pred             EEEEEecCCCceEEEEEe
Q psy4613          78 YKCIAKNSLGEVESSIRL   95 (96)
Q Consensus        78 y~c~~~~~~g~~~~~~~l   95 (96)
                      |.|.+.|..|.....+.|
T Consensus       267 Y~C~a~N~~g~~~~~~~l  284 (290)
T 2o26_X          267 FMCYANNTFGSANVTTTL  284 (290)
T ss_dssp             EEEEEECSSCEEEEEEEE
T ss_pred             EEEEEeCCCCcEEEEEEE
Confidence            999999999988777665

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.51  E-value=3.1e-13  Score=62.15  Aligned_cols=73  Identities=16%  Similarity=0.266  Sum_probs=54.9

Q ss_pred             CeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEE
Q psy4613           2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCI   81 (96)
Q Consensus         2 p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~   81 (96)
                      |.+...+..+.+..|..+.|.|. .+.+.+.+.|++++..+. ...++.+....     ....|.|.++...|.|.|.|.
T Consensus         9 p~~~~~~~~~~v~~G~~v~l~C~-~~~p~~~v~W~k~~~~l~-~~~~~~~~~~~-----~~~~L~I~~v~~~D~G~Y~C~   81 (103)
T 2dku_A            9 NCFTEELTNLQVEEKGTAVFTCK-TEHPAATVTWRKGLLELR-ASGKHQPSQEG-----LTLRLTISALEKADSDTYTCD   81 (103)
T ss_dssp             CCCSSCCCCEEEETTSEEEEEEE-CSSCCSCCEEEESSCBCC-SSSSEEEEEET-----TEEEEEEESCCTTTCSEEEEE
T ss_pred             CEeEecCCcEEEeCCCcEEEEEE-eCCCCCeEEEEeCCEECC-CCCeEEEEeCC-----CEEEEEECCCCcccCEEEEEE
Confidence            44555567778999999999999 477888999999876543 33455443211     235799999999999999998

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A

Probab=99.51  E-value=1.2e-12  Score=66.95  Aligned_cols=84  Identities=25%  Similarity=0.308  Sum_probs=61.4

Q ss_pred             CeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEec--ccceEEEEeccccceEEEEEEEccCCCCCCeeEE
Q psy4613           2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVIS--SERYEVESISRSIFDFKMRLTIKKITKYDLGSYK   79 (96)
Q Consensus         2 p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~   79 (96)
                      |.+...+....+..|..+.|.|.+.+.|.+.+.|++++..+...  ..++......     ....|.|.++...|.|.|.
T Consensus       109 p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~g~~l~~~~~~~~~~~~~~~-----~~~~L~i~~~~~~d~G~Y~  183 (212)
T 2yd6_A          109 PTIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSE-----SIGALQIEQSEESDQGKYE  183 (212)
T ss_dssp             CEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEEC------CCEEEEEET-----TEEEEEECSCCGGGCEEEE
T ss_pred             ceeecCCcceeEecCCCEEEEEEecCCCCCeEEEEECCccccCcCCCceEEEEecC-----CeEEEEEcCCCcccCEEEE
Confidence            44555555567788999999999999999999999987655422  1232222111     2478999999999999999


Q ss_pred             EEEecCCCceE
Q psy4613          80 CIAKNSLGEVE   90 (96)
Q Consensus        80 c~~~~~~g~~~   90 (96)
                      |.+.|..|...
T Consensus       184 C~a~N~~G~~~  194 (212)
T 2yd6_A          184 CVATNSAGTRY  194 (212)
T ss_dssp             EEEEETTEEEE
T ss_pred             EEEECCCCccc
Confidence            99999988654

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A

Probab=99.49  E-value=9e-13  Score=61.08  Aligned_cols=76  Identities=17%  Similarity=0.317  Sum_probs=56.4

Q ss_pred             CCeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEE
Q psy4613           1 HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKC   80 (96)
Q Consensus         1 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c   80 (96)
                      +|.+...+..+.+..|+.+.|.|.+.+.  +.+.|++++..+. ...++.+....     ....|.|.+++..|.|.|.|
T Consensus         8 pp~~~~~~~~~~v~~G~~v~l~C~~~~~--p~v~W~k~~~~~~-~~~~~~~~~~~-----~~~~L~I~~v~~~D~G~Y~C   79 (108)
T 2dm7_A            8 PARFTQDLKTKEASEGATATLQCELSKV--APVEWKKGPETLR-DGGRYSLKQDG-----TRCELQIHDLSVADAGEYSC   79 (108)
T ss_dssp             CCCBCSCCBCCEEETTSCEEEEEEBSSS--CCCEEESSSSBCC-SSSSCEEEEET-----TEEEEEESSCCTTTCSEEEE
T ss_pred             CCeeeecCCcEEEeCCCcEEEEEEeCCC--CeeEEEECCEECC-CCCCEEEEecC-----CEEEEEECCCCcccCEEEEE
Confidence            3555556677788999999999998764  7899999866543 33455443311     23569999999999999999


Q ss_pred             EEec
Q psy4613          81 IAKN   84 (96)
Q Consensus        81 ~~~~   84 (96)
                      .+.+
T Consensus        80 ~a~n   83 (108)
T 2dm7_A           80 MCGQ   83 (108)
T ss_dssp             EETT
T ss_pred             EEcC
Confidence            9855

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}

Probab=99.49  E-value=1.4e-12  Score=69.75  Aligned_cols=77  Identities=25%  Similarity=0.411  Sum_probs=61.3

Q ss_pred             eeecCCCcEEEEEEeeecccc-eeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCce
Q psy4613          11 VGAPIDTDVTLECYVEAYPKS-INYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEV   89 (96)
Q Consensus        11 ~~~~~g~~~~l~c~~~~~~~~-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~   89 (96)
                      ..+..|..+.|.|.+.+.|.+ .+.|++++..+.. ..++....       ....|.|.++...|.|.|.|.+.|..|..
T Consensus       231 ~~v~~G~~~~l~C~~~~~p~~~~v~W~~~g~~~~~-~~~~~~~~-------~~~~L~I~~v~~~d~G~Y~C~a~N~~G~~  302 (312)
T 2y23_A          231 WEVTGECNVLLKCKVANIKKETHIVWYKDEREISV-DEKHDFKD-------GICTLLITEFSKKDAGIYEVILKDDRGKD  302 (312)
T ss_dssp             EEEETTTEEEEEEEEESCCSSCEEEEEETTEEEEE-ECCC-----------CEEEEEECSCSGGGCEEEEEEEESTTCCE
T ss_pred             EEEeCCCEEEEEEEEcCCCCCCEEEEeeCCEECCC-CCcEEEEC-------CEEEEEECcCCHHHCEEEEEEEEcCCCce
Confidence            567899999999999999888 9999998765542 33333321       24689999999999999999999999998


Q ss_pred             EEEEEe
Q psy4613          90 ESSIRL   95 (96)
Q Consensus        90 ~~~~~l   95 (96)
                      ...+.|
T Consensus       303 ~~~~~l  308 (312)
T 2y23_A          303 KSRLKL  308 (312)
T ss_dssp             EEEEEE
T ss_pred             eeeeEE
Confidence            887765

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A

Probab=99.49  E-value=8e-13  Score=66.72  Aligned_cols=80  Identities=21%  Similarity=0.281  Sum_probs=62.1

Q ss_pred             eeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEcc-CCCCCCeeEEEEEecCCCc
Q psy4613          10 LVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKK-ITKYDLGSYKCIAKNSLGE   88 (96)
Q Consensus        10 ~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~-~~~~d~g~y~c~~~~~~g~   88 (96)
                      ...+..|..+.|.|.+.+.|.+.+.|++++..+. ...++......     ....|.|.+ +...|.|.|.|.+.|..|.
T Consensus       113 ~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~-~~~~~~~~~~~-----~~~~L~i~~~~~~~d~G~Y~C~a~N~~g~  186 (197)
T 2j8h_A          113 AVHALRGEVVSIKIPFSGKPDPVITWQKGQDLID-NNGHYQVIVTR-----SFTSLVFPNGVERKDAGFYVVCAKNRFGI  186 (197)
T ss_dssp             EEEEETTCCCEEEEEEEEESCCEEEEEESSCEEC-SSSSCEEEECS-----SEEEEECTTCCCGGGCEEEEEEEEETTEE
T ss_pred             eEEEeCCCEEEEEEEEEecCCCcEEEEECCEEee-cCCCEEEEEcC-----CceEEEEeCCCCcccCEeEEEEEEeCCCc
Confidence            3557789999999999999999999999865543 33444433211     246789999 9999999999999999998


Q ss_pred             eEEEEEe
Q psy4613          89 VESSIRL   95 (96)
Q Consensus        89 ~~~~~~l   95 (96)
                      ....+.|
T Consensus       187 ~~~~~~l  193 (197)
T 2j8h_A          187 DQKTVEL  193 (197)
T ss_dssp             EEEEEEE
T ss_pred             EeEEEEE
Confidence            7776654

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A

Probab=99.48  E-value=4.8e-13  Score=73.46  Aligned_cols=84  Identities=30%  Similarity=0.438  Sum_probs=65.3

Q ss_pred             CeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEE
Q psy4613           2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCI   81 (96)
Q Consensus         2 p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~   81 (96)
                      |.+...+....+..|+.+.|.|.+.+.|.+.+.|++++..+. ...++...         ...|.|.++...|.|.|.|.
T Consensus       295 p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~-~~~~~~~~---------~~~L~i~~v~~~d~G~Y~C~  364 (382)
T 1cs6_A          295 PDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLA-SQNRIEVS---------GGELRFSKLVLEDSGMYQCV  364 (382)
T ss_dssp             EEEEECCCCEEEETTCCEEEECEEEEESCCEEEEEETTEECC-CCSSEEEE---------TTEEEESSCCGGGCEEEEEE
T ss_pred             CCcccCCCccEEcCCCeEEEEEEeeeecCCEEEEEECCEECC-CCceEEEE---------CCEEEECcCCcccCEEEEEE
Confidence            344444455678889999999999999999999999876543 33343332         24699999999999999999


Q ss_pred             EecCCCceEEEEEe
Q psy4613          82 AKNSLGEVESSIRL   95 (96)
Q Consensus        82 ~~~~~g~~~~~~~l   95 (96)
                      +.|..|.....+.|
T Consensus       365 a~N~~G~~~~~~~l  378 (382)
T 1cs6_A          365 AENKHGTVYASAEL  378 (382)
T ss_dssp             EEETTEEEEEEEEE
T ss_pred             EEeCCCeEEEEEEE
Confidence            99999988777665

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A

Probab=99.48  E-value=3.8e-12  Score=70.02  Aligned_cols=89  Identities=27%  Similarity=0.322  Sum_probs=65.1

Q ss_pred             CCeEEecCceeeecCCCcEEEEEEeeecccceeEEeec--cceeEec----ccceEEEEeccccceEEEEEEEccCCCCC
Q psy4613           1 HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRD--QGDMVIS----SERYEVESISRSIFDFKMRLTIKKITKYD   74 (96)
Q Consensus         1 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~--~~~~~~~----~~~~~~~~~~~~~~~~~~~l~i~~~~~~d   74 (96)
                      +|.+..+.. ..+..|+.+.|.|.+.+.|.+.+.|+++  +..+...    ..++.....     .....|.|.+++..|
T Consensus         1 ~P~i~~~~~-~~~~~G~~v~l~C~~~g~p~p~v~W~~~~~g~~~~~~~~~~~~~~~~~~~-----~~~~~L~i~~v~~~D   74 (389)
T 2jll_A            1 QPHIIQLKN-ETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQ-----HGSSSLHIKDVKLSD   74 (389)
T ss_dssp             CCEEEECCC-EEEETTSEEEEEEEEECSSCCEEEEEETTTTEEECC--CCSSSSEEEEEC-----SSEEEEEEESCCGGG
T ss_pred             CCeEEecCc-eEEeCCCeEEEEEEeecccCCeEEEEeCCCCceeccCcCCCCCeEEEecc-----CCcceEEEcccChhh
Confidence            577776544 4566799999999999999999999998  4443211    233333221     024689999999999


Q ss_pred             CeeEEEEEecCCCceEEEEEe
Q psy4613          75 LGSYKCIAKNSLGEVESSIRL   95 (96)
Q Consensus        75 ~g~y~c~~~~~~g~~~~~~~l   95 (96)
                      .|.|.|.+.|..|.....+.|
T Consensus        75 ~G~Y~C~a~n~~g~~~~~~~l   95 (389)
T 2jll_A           75 SGRYDCEAASRIGGHQKSMYL   95 (389)
T ss_dssp             CEEEEEEEECSSCEEEEEEEE
T ss_pred             CEEEEEEEEeCCCCcceEEEE
Confidence            999999999999877655544

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}

Probab=99.48  E-value=1.6e-12  Score=69.72  Aligned_cols=83  Identities=19%  Similarity=0.317  Sum_probs=64.2

Q ss_pred             CceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCC
Q psy4613           8 NQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLG   87 (96)
Q Consensus         8 ~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g   87 (96)
                      +....+..|+.+.|.|.+.+.|.+.+.|++++..+. ...++.+...  +.  ....|.|.++...|.|.|.|.+.|..|
T Consensus       229 ~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~-~~~~~~~~~~--~~--~~~~L~i~~v~~~d~G~Y~C~a~N~~g  303 (317)
T 2y25_A          229 PDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALA-SDDHCNLKFE--AG--RTAYFTINGVSTADSGKYGLVVKNKYG  303 (317)
T ss_dssp             CSEEEEETTSBBCEEEEEECSSCCEEEEEESSSEEC-CCSSEEECCB--TT--TEEEEEEBSCCSTTCEEEEEEEEETTE
T ss_pred             CccEEEEcCCEEEEEEEEecCCCCEEEEEECCEeCC-CCCcEEEEEc--CC--CEEEEEECCCCHHHCEEEEEEEEeCCC
Confidence            455678899999999999999999999999876553 3334433221  01  235899999999999999999999999


Q ss_pred             ceEEEEEe
Q psy4613          88 EVESSIRL   95 (96)
Q Consensus        88 ~~~~~~~l   95 (96)
                      .....+.|
T Consensus       304 ~~~~~~~l  311 (317)
T 2y25_A          304 SETSDFTV  311 (317)
T ss_dssp             EEEEEEEE
T ss_pred             eEEEEEEE
Confidence            88776654

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}

Probab=99.47  E-value=1.2e-12  Score=70.02  Aligned_cols=87  Identities=21%  Similarity=0.303  Sum_probs=61.2

Q ss_pred             CCeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCC-CCCeeEE
Q psy4613           1 HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITK-YDLGSYK   79 (96)
Q Consensus         1 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~-~d~g~y~   79 (96)
                      +|.+...+....+..|+.+.|.|.+.+.|.+.+.|++++..+.  ..+........ .  ....|.|.++.. .|.|.|.
T Consensus         6 ~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~~~i~W~k~g~~i~--~~~~~~~~~~~-~--~~~~L~i~~~~~~~D~G~Y~   80 (304)
T 2yd9_A            6 PPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVN--SQRFETIEFDE-S--AGAVLRIQPLRTPRDENVYE   80 (304)
T ss_dssp             CCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEC---------CTTEEEEEETT-T--TEEEEEECSCCTTTTCSEEE
T ss_pred             CCeeeecCCceEecCCCeEEEEEEEEEeCCCeEEEEECCEECC--CCceEEEEecC-C--CceEEEEecccccCCCeEEE
Confidence            5777777778889999999999999999999999999866542  23333322111 1  136799999997 9999999


Q ss_pred             EEEecCCCceEEE
Q psy4613          80 CIAKNSLGEVESS   92 (96)
Q Consensus        80 c~~~~~~g~~~~~   92 (96)
                      |.+.+..|.....
T Consensus        81 C~a~n~~g~~~~~   93 (304)
T 2yd9_A           81 CVAQNSVGEITVH   93 (304)
T ss_dssp             EEEECSSCEECCE
T ss_pred             EEEECCCCeEEEE
Confidence            9999988864433

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}

Probab=99.47  E-value=3.3e-12  Score=64.44  Aligned_cols=88  Identities=15%  Similarity=0.161  Sum_probs=63.5

Q ss_pred             CCeEEecCceeeecCCCcEEEEEEee-ecccceeEEeeccceeEecc-cceEEEEecc--ccceEEEEEEEccCCCCCCe
Q psy4613           1 HPVIHVPNQLVGAPIDTDVTLECYVE-AYPKSINYWVRDQGDMVISS-ERYEVESISR--SIFDFKMRLTIKKITKYDLG   76 (96)
Q Consensus         1 ~p~~~~~~~~~~~~~g~~~~l~c~~~-~~~~~~~~w~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~l~i~~~~~~d~g   76 (96)
                      +|.+...+....+..|+.+.|.|.+. +.|.+.+.|++++..+.... .+........  ..+.....|.|.+++..|.|
T Consensus         2 ~~~~~~~p~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G   81 (195)
T 2c5d_C            2 ESPFVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSLQLSDTG   81 (195)
T ss_dssp             CCSEEECCCCEEECTTCCEEEEEEEEEESSCCCCEEEETTEECCSCEEEEEEEECSSSTTSEEEEEEEEEESSCCSTTCE
T ss_pred             CCeeccChhheEEecCCcEEEecccccCCCCcEEEEEECCEEcccCCCCceEEEEccccccceeeccEEEEEeccccCCc
Confidence            46777788888899999999999999 88889999999865543211 1222221111  01111478999999999999


Q ss_pred             eEEEEEecCCCc
Q psy4613          77 SYKCIAKNSLGE   88 (96)
Q Consensus        77 ~y~c~~~~~~g~   88 (96)
                      .|.|.+.+..|.
T Consensus        82 ~Y~C~~~~~~~~   93 (195)
T 2c5d_C           82 QYQCLVFLGHQT   93 (195)
T ss_dssp             EEEEEEEETTEE
T ss_pred             EEEEEEEeCCCc
Confidence            999999987664

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.46  E-value=9.3e-13  Score=72.49  Aligned_cols=83  Identities=24%  Similarity=0.345  Sum_probs=64.6

Q ss_pred             CeEEecCce-eeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEE
Q psy4613           2 PVIHVPNQL-VGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKC   80 (96)
Q Consensus         2 p~~~~~~~~-~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c   80 (96)
                      |.+...+.. ..+..|+.+.|.|.+.+.|.+.+.|++++..+.  ..++....         ..|.|.++...|.|.|.|
T Consensus       309 P~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~--~~~~~~~~---------~~L~i~~~~~~d~G~Y~C  377 (395)
T 1bih_A          309 PKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLS--GGRATVTD---------SGLVIKGVKNGDKGYYGC  377 (395)
T ss_dssp             EEEEECCCSEEEECTTSCEEEECEEEEESCCCCEEEETTEECC--SSSEEEET---------TEEEESSCCSTTCEEEEE
T ss_pred             CccccCCCcceEecCCCeEEEEEEECcccCCeeEEEECCEECC--CCceEEEC---------CEEEEeeCCcccCEEEEE
Confidence            444444443 678899999999999999999999999876543  23443321         379999999999999999


Q ss_pred             EEecCCCceEEEEEe
Q psy4613          81 IAKNSLGEVESSIRL   95 (96)
Q Consensus        81 ~~~~~~g~~~~~~~l   95 (96)
                      .+.|..|.....+.|
T Consensus       378 ~a~N~~G~~~~~~~l  392 (395)
T 1bih_A          378 RATNEHGDKYFETLV  392 (395)
T ss_dssp             EEEETTEEEEEEEEE
T ss_pred             EEEccCCCceEEEEE
Confidence            999999988777655

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}

Probab=99.46  E-value=3.8e-13  Score=67.95  Aligned_cols=77  Identities=30%  Similarity=0.375  Sum_probs=60.0

Q ss_pred             ceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCc
Q psy4613           9 QLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGE   88 (96)
Q Consensus         9 ~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~   88 (96)
                      ....+..|..+.|.|.+.+.|.+.+.|++++..+. ..  .....       ....|.|.++...|.|.|.|.+.|..|.
T Consensus       121 ~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~~~~~~-~~--~~~~~-------~~~~L~i~~v~~~d~G~Y~C~a~n~~g~  190 (201)
T 3s97_C          121 KDVYALMGQNVTLECFALGNPVPDIRWRKVLEPMP-ST--AEIST-------SGAVLKIFNIQLEDEGIYECEAENIRGK  190 (201)
T ss_dssp             CCEEEETTCCEEEEEEEEEESCCEEEEEETTBCCC-TT--CEEET-------TTTEEEECSCCGGGCEEEEEEEEETTEE
T ss_pred             CceEEecCCcEEEEEEccCCCCCceEEEeCCCcCC-Cc--eeecC-------CCCEEEEccCChhhCEEEEEEEEecCCc
Confidence            35667889999999999999999999999876442 11  11111       1247899999999999999999999998


Q ss_pred             eEEEEEe
Q psy4613          89 VESSIRL   95 (96)
Q Consensus        89 ~~~~~~l   95 (96)
                      ....+.|
T Consensus       191 ~~~~~~l  197 (201)
T 3s97_C          191 DKHQARI  197 (201)
T ss_dssp             EEEEEEE
T ss_pred             eeeeEEE
Confidence            7776654

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*

Probab=99.46  E-value=3.4e-13  Score=74.34  Aligned_cols=87  Identities=14%  Similarity=0.155  Sum_probs=64.4

Q ss_pred             CeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEE
Q psy4613           2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCI   81 (96)
Q Consensus         2 p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~   81 (96)
                      |.+...+....+..|+.+.|.|.+.+.|.+.+.|++++..+...........       ....|.|.++...|.|.|.|.
T Consensus       313 p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~-------~~~~L~i~~v~~~d~G~Y~C~  385 (404)
T 3p3y_A          313 PYWLDEPKNLILAPGEDGRLVCRANGNPKPTVQWMVNGEPLQSAPPNPNREV-------AGDTIIFRDTQISSRAVYQCN  385 (404)
T ss_dssp             EEEEECCCCEEECTTCCEEEECEEEEESCCEEEEEETTEEGGGSCCCTTEEE-------ETTEEEESSCCSSCCCEEEEE
T ss_pred             CeeeccCCcceeecCCcEEEEEEccccCCCceEEEECCEecCCCCCCceEEe-------cCCEEEEeecCHHHCEEEEEE
Confidence            3444455566788899999999999999999999998765532111111111       124799999999999999999


Q ss_pred             EecCCCceEEEEEe
Q psy4613          82 AKNSLGEVESSIRL   95 (96)
Q Consensus        82 ~~~~~g~~~~~~~l   95 (96)
                      +.|..|.....+.|
T Consensus       386 a~N~~G~~~~~~~l  399 (404)
T 3p3y_A          386 TSNEHGYLLANAFV  399 (404)
T ss_dssp             EEETTEEEEEEEEE
T ss_pred             EEeCCCcEEEEEEE
Confidence            99999988776654

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}

Probab=99.46  E-value=5.3e-13  Score=66.89  Aligned_cols=77  Identities=27%  Similarity=0.449  Sum_probs=59.6

Q ss_pred             eeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCceE
Q psy4613          11 VGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVE   90 (96)
Q Consensus        11 ~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~~   90 (96)
                      ..+..|..+.|.|.+.+.|.+.+.|++++..+. ...++....       ....|.|.++...|.|.|.|.+.|..|...
T Consensus       108 ~~~~~g~~v~l~C~~~g~p~~~v~W~~~g~~~~-~~~~~~~~~-------~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~  179 (189)
T 2v5t_A          108 ATAERGEEMTFSCRASGSPEPAISWFRNGKLIE-ENEKYILKG-------SNTELTVRNIINSDGGPYVCRATNKAGEDE  179 (189)
T ss_dssp             EETTSCCCEEEECEEEEESCCEEEEEETTEECC-CSSSEEEET-------TTTEEEECSCCGGGCEEEEEEEEETTEEEE
T ss_pred             ccccCCCcEEEEEEEccCCCCeEEEEECCEECc-CCCcEEEec-------CCCEEEEcCCChhhCeeEEEEEEeCCCcee
Confidence            456779999999999999999999999865543 233333221       124689999999999999999999999877


Q ss_pred             EEEEe
Q psy4613          91 SSIRL   95 (96)
Q Consensus        91 ~~~~l   95 (96)
                      ..+.|
T Consensus       180 ~~~~l  184 (189)
T 2v5t_A          180 KQAFL  184 (189)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            66654

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R

Probab=99.46  E-value=9.3e-12  Score=66.83  Aligned_cols=94  Identities=22%  Similarity=0.322  Sum_probs=64.9

Q ss_pred             CeEEecCc-eeeecCCCcEEEEEEeeecccceeEEeeccceeEeccc----ceEEEEeccc--cceEEEEEEEccCCCCC
Q psy4613           2 PVIHVPNQ-LVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSE----RYEVESISRS--IFDFKMRLTIKKITKYD   74 (96)
Q Consensus         2 p~~~~~~~-~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~----~~~~~~~~~~--~~~~~~~l~i~~~~~~d   74 (96)
                      |.+..++. .+.+..|..+.|.|.+.+.|.|.+.|++++..+.....    .+.......+  .......|.|.++...|
T Consensus       209 P~~~~~~~~~~~~~~g~~v~l~C~~~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d  288 (315)
T 1itb_B          209 PVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRF  288 (315)
T ss_dssp             CEECSCCSEEEECCSSSCEEEEEEEEECTTSEEEEEETTEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCGGG
T ss_pred             CEEecCCCCcEEEeCCCcEEEEEEEecCCCCeeEEEECCEECCcccccccccceeeeccCCCceeEEEEEEEEeecCHHH
Confidence            44443333 24678999999999999999999999998655432111    1100000000  01134689999999999


Q ss_pred             -CeeEEEEEecCCCceEEEEEe
Q psy4613          75 -LGSYKCIAKNSLGEVESSIRL   95 (96)
Q Consensus        75 -~g~y~c~~~~~~g~~~~~~~l   95 (96)
                       .|.|.|.+.|..|.....+.|
T Consensus       289 ~~G~Y~C~a~N~~G~~~~~~~l  310 (315)
T 1itb_B          289 YKHPFTCFAKNTHGIDAAYIQL  310 (315)
T ss_dssp             GTSCEEEEEECTTCCEEEEEEE
T ss_pred             cCCceEEEEecCCCceeEEEEE
Confidence             999999999999998887765

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.45  E-value=2.4e-13  Score=63.80  Aligned_cols=76  Identities=17%  Similarity=0.165  Sum_probs=56.0

Q ss_pred             eEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEE
Q psy4613           3 VIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIA   82 (96)
Q Consensus         3 ~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~   82 (96)
                      .+...+..+.+..|+.+.|.|.+.+.|.|.+.|++++..+. ...++.+....    .....|.|.++...|.|.|.|.+
T Consensus        15 ~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~l~-~~~~~~~~~~~----~~~~~L~I~~v~~~D~G~Y~C~~   89 (115)
T 2cr6_A           15 HIIEDLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLH-ANELNEIDAQP----GGYHVLTLRQLALKDSGTIYFEA   89 (115)
T ss_dssp             EEEECCCEEEEETTSCEECCCEEESTTCCSCEEEESSCEEC-CSSSCCBCCBT----TTBCCBEECSCCTTTCEEEEEEE
T ss_pred             eEeccCccEEEeCCCcEEEEEEEcCCCCCccEEEECCEECC-CCCcEEEEEcC----CCEEEEEEcCCChhhCEEEEEEE
Confidence            45556677889999999999999999999999999876543 22333221100    02246999999999999999984


Q ss_pred             e
Q psy4613          83 K   83 (96)
Q Consensus        83 ~   83 (96)
                      .
T Consensus        90 g   90 (115)
T 2cr6_A           90 G   90 (115)
T ss_dssp             T
T ss_pred             C
Confidence            3

>1jhl_L IGG1-kappa D11.15 FV (light chain); complex(antibody-antigen); 2.40A {Mus musculus} SCOP: b.1.1.1

Probab=99.45  E-value=2.5e-12  Score=59.65  Aligned_cols=79  Identities=18%  Similarity=0.321  Sum_probs=56.5

Q ss_pred             eEEecCceeeecCCCcEEEEEEeeecccceeEEeeccc----eeEe-c--------ccceEEEEeccccceEEEEEEEcc
Q psy4613           3 VIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQG----DMVI-S--------SERYEVESISRSIFDFKMRLTIKK   69 (96)
Q Consensus         3 ~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~----~~~~-~--------~~~~~~~~~~~~~~~~~~~l~i~~   69 (96)
                      .+..++..+.+..|+++.|.|.+.+.+.+.+.|++...    ..+. .        ..++....     ......|.|.+
T Consensus         3 ~v~q~p~~~~~~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~-----~~~~~~L~I~~   77 (108)
T 1jhl_L            3 ELTQSPSYLVASPGETITINCRASKSISKSLAWYQEKPGKTNNLLIYSGSTLQSGIPSRFSGSG-----SGTDFTLTISS   77 (108)
T ss_dssp             CEEEECSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE-----SSSEEEEEECS
T ss_pred             ceeccCCeeEEcCCCCEEEEeEECCCCCceEEEEEECCCCCCEEEEEcCCCcCCCCCceEEEEe-----cCCEEEEEECC
Confidence            34556677889999999999999988888999998531    1111 0        12333221     01246799999


Q ss_pred             CCCCCCeeEEEEEecCC
Q psy4613          70 ITKYDLGSYKCIAKNSL   86 (96)
Q Consensus        70 ~~~~d~g~y~c~~~~~~   86 (96)
                      ++..|+|.|.|.+.+..
T Consensus        78 v~~~DsG~Y~C~~~n~~   94 (108)
T 1jhl_L           78 LEPEDFAMYICQQHNEY   94 (108)
T ss_dssp             CCTTCCSEEEEEECSSS
T ss_pred             CCHHHCEEEEEEEccCC
Confidence            99999999999998863

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A

Probab=99.45  E-value=9.2e-12  Score=62.55  Aligned_cols=82  Identities=18%  Similarity=0.216  Sum_probs=61.1

Q ss_pred             CeEEecCceeeecCCCcEEEEEEeeecc-cceeEEee-ccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEE
Q psy4613           2 PVIHVPNQLVGAPIDTDVTLECYVEAYP-KSINYWVR-DQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYK   79 (96)
Q Consensus         2 p~~~~~~~~~~~~~g~~~~l~c~~~~~~-~~~~~w~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~   79 (96)
                      +.+...+....+..|+.+.|.|.+.+.+ .+.+.|++ ++..+.....++......    .....|.|.+++..|.|.|.
T Consensus         3 ~~v~~~p~~~~v~~G~~v~l~C~~~~~~~~~~v~W~~~~g~~~~~~~~~~~~~~~~----~~~~~L~i~~~~~~d~G~Y~   78 (191)
T 1epf_A            3 LQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWND----DDSSTLTIYNANIDDAGIYK   78 (191)
T ss_dssp             CCEEEESSSEEEETTCCEEEEEEECCCSCCCEEEEECTTSCEECCBSSSEEEEEEE----TTEEEEEECSCCGGGCEEEE
T ss_pred             eEEEecCCCcEEcCCCCEEEEEECCCCCCCceEEEEeCCCccccCCCCeEEEEECC----CCceEEEEccCCcccCEEEE
Confidence            4566677778899999999999999876 78999999 554443233444432210    02468999999999999999


Q ss_pred             EEEecCCC
Q psy4613          80 CIAKNSLG   87 (96)
Q Consensus        80 c~~~~~~g   87 (96)
                      |.+.+..+
T Consensus        79 C~~~~~~~   86 (191)
T 1epf_A           79 CVVTAEDG   86 (191)
T ss_dssp             EEEEETTT
T ss_pred             EEEEcCCC
Confidence            99999874

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.45  E-value=6.6e-13  Score=74.49  Aligned_cols=85  Identities=25%  Similarity=0.411  Sum_probs=64.8

Q ss_pred             CeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecc---cceEEEEeccccceEEEEEEEccCCCCCCeeE
Q psy4613           2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISS---ERYEVESISRSIFDFKMRLTIKKITKYDLGSY   78 (96)
Q Consensus         2 p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y   78 (96)
                      |.+..++....+..|+.+.+.|.+ +.|.|.+.|++.++......   .++...        ...+|.|.+++..|+|.|
T Consensus       342 P~i~~~~~~~~v~~G~~v~L~C~~-~~p~p~i~W~~~~~~~~~~~~~~~~~~~~--------~~~~L~I~~v~~~D~G~Y  412 (440)
T 3zyj_A          342 PVIVEPPADLNVTEGMAAELKCRA-STSLTSVSWITPNGTVMTHGAYKVRIAVL--------SDGTLNFTNVTVQDTGMY  412 (440)
T ss_dssp             CCEEECCCCEEECTTSCCEECCEE-SSTTSEEEEECTTSCEEESSSCCSSEEEC--------TTCCEEESSCCSTTCEEE
T ss_pred             CcccccccceeeccCceEEEEeec-CCCCCceEEEeCCCceeeccCCCceEEEc--------cCCeEEEccCChhhCEEE
Confidence            566666777889999999999999 56888999998655543221   122211        124699999999999999


Q ss_pred             EEEEecCCCceEEEEEe
Q psy4613          79 KCIAKNSLGEVESSIRL   95 (96)
Q Consensus        79 ~c~~~~~~g~~~~~~~l   95 (96)
                      .|.+.|..|....+..+
T Consensus       413 ~C~a~N~~G~~~~~~~~  429 (440)
T 3zyj_A          413 TCMVSNSVGNTTASATL  429 (440)
T ss_dssp             EEEEECSSCEEEEEEEE
T ss_pred             EEEEEcCCCcEEEEEEE
Confidence            99999999988777654

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}

Probab=99.45  E-value=2.8e-13  Score=71.96  Aligned_cols=77  Identities=27%  Similarity=0.449  Sum_probs=60.6

Q ss_pred             eeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCceE
Q psy4613          11 VGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVE   90 (96)
Q Consensus        11 ~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~~   90 (96)
                      ..+..|..+.|.|.+.+.|.+.+.|++++..+. ...++....       ....|.|.++...|.|.|.|.+.|..|...
T Consensus       204 ~~~~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~-~~~~~~~~~-------~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~  275 (291)
T 2wim_A          204 ATAERGEEMTFSCRASGSPEPAISWFRNGKLIE-ENEKYILKG-------SNTELTVRNIINSDGGPYVCRATNKAGEDE  275 (291)
T ss_dssp             CCSSSCCEEEEECBCCCBSCCEEEEEETTEECC-CTTTEEECS-------TTCEEEEESCCSTTCEEEEEEEEETTEEEE
T ss_pred             ceecCCCeEEEEEEeecCCCCeEEEEECCEECc-CCccEEEcC-------CccEEEEeeCCcccCEEEEEEEEECCCcee
Confidence            356779999999999999999999999865543 233333221       125789999999999999999999999988


Q ss_pred             EEEEe
Q psy4613          91 SSIRL   95 (96)
Q Consensus        91 ~~~~l   95 (96)
                      ..+.|
T Consensus       276 ~~~~l  280 (291)
T 2wim_A          276 KQAFL  280 (291)
T ss_dssp             EEEEE
T ss_pred             eeEEE
Confidence            87765

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}

Probab=99.45  E-value=4.6e-12  Score=63.74  Aligned_cols=82  Identities=20%  Similarity=0.365  Sum_probs=59.4

Q ss_pred             CCeEEecCceeeecCCCcEEEEEEeeeccc--ceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeE
Q psy4613           1 HPVIHVPNQLVGAPIDTDVTLECYVEAYPK--SINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSY   78 (96)
Q Consensus         1 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~--~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y   78 (96)
                      +|.+..++.......|+.+.|.|.+.+.+.  +.+.|++++..+. . .+...         ....|.|.+++..|.|.|
T Consensus         3 ~P~i~~~~~~~v~~~G~~v~l~C~~~~~~~~~~~v~W~~~~~~~~-~-~~~~~---------~~~~L~i~~~~~~d~G~Y   71 (190)
T 2wv3_A            3 EPRIVTSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELT-A-TRKNA---------SNMEYRINKPRAEDSGEY   71 (190)
T ss_dssp             CCEEEECCCEECCCSSSCEEEEEEEEECSSCEEEEEEEETTEECT-T-CCBCC---------SEEEEEESSCCGGGCEEE
T ss_pred             CCcccccceEEEccCCceEEEEEEeccCCCCceEEEEEECCEECc-c-cceEe---------ccEEEEEecCCcccCEEE
Confidence            567776655444444999999999998876  7899999865542 1 11110         247799999999999999


Q ss_pred             EEEEecCCCceEEEEE
Q psy4613          79 KCIAKNSLGEVESSIR   94 (96)
Q Consensus        79 ~c~~~~~~g~~~~~~~   94 (96)
                      .|.+.+. +.....+.
T Consensus        72 ~C~~~n~-~~~~~~~~   86 (190)
T 2wv3_A           72 HCVYHFV-SAPKANAT   86 (190)
T ss_dssp             EEEEEET-TEEEEEEE
T ss_pred             EEEEEeC-CcccccEE
Confidence            9999988 65554443

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.44  E-value=4.5e-12  Score=59.11  Aligned_cols=67  Identities=24%  Similarity=0.328  Sum_probs=51.3

Q ss_pred             eeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEec
Q psy4613          11 VGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKN   84 (96)
Q Consensus        11 ~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~   84 (96)
                      +.+..|+.+.|.|.+. .+.+.+.|++++..+. ...++.+....     ....|.|.++...|.|.|.|.+.|
T Consensus        23 ~~~~~G~~v~L~C~~~-~p~~~v~W~k~g~~~~-~~~~~~~~~~~-----~~~~L~I~~v~~~D~G~Y~C~a~n   89 (113)
T 2cpc_A           23 VAAVRLERVVLTCELC-RPWAEVRWTKDGEEVV-ESPALLLQKED-----TVRRLVLPAVQLEDSGEYLCEIDD   89 (113)
T ss_dssp             EEEETTCCEEEEEEES-CTTCCCEEEETTEECC-CBTTBEEEECS-----SEEEEEESSCCTTTCEEEEEESSS
T ss_pred             EEEEcCCeEEEEEEec-CCCCeEEEEECCEECc-cCCCEEEEECC-----CEEEEEECCCCcccCEEEEEEEec
Confidence            5677899999999985 6888999999865543 33444443211     236799999999999999999988

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A

Probab=99.44  E-value=7.6e-12  Score=72.46  Aligned_cols=88  Identities=25%  Similarity=0.302  Sum_probs=70.1

Q ss_pred             CeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEE
Q psy4613           2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCI   81 (96)
Q Consensus         2 p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~   81 (96)
                      |.+........+..|+++.+.|.+.+.|.|.+.|++++..+. ...++......     ....|.|..+...|.|.|.|.
T Consensus       483 P~~~~~~~~~~v~~G~~~~~~~~v~g~P~P~v~W~k~~~el~-~s~~~~i~~~~-----~~~~L~I~~~~~~D~G~Yt~~  556 (573)
T 3uto_A          483 PRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELK-QSVKYMKRYNG-----NDYGLTINRVKGDDKGEYTVR  556 (573)
T ss_dssp             CEEEECCCCEEECTTSCEEEEEEEECSSCCEEEEEETTEECC-SSSSEEEEEET-----TEEEEEECSCCGGGCEEEEEE
T ss_pred             CccccCCCCcEEeCCCcEEEEEEEEccCCCeEEEEECCEEcc-cCCcEEEEEcC-----CEEEEEEcCCCcccCcEEEEE
Confidence            444555566778899999999999999999999999876654 44555544322     346799999999999999999


Q ss_pred             EecCCCceEEEEEe
Q psy4613          82 AKNSLGEVESSIRL   95 (96)
Q Consensus        82 ~~~~~g~~~~~~~l   95 (96)
                      +.|..|...+.+.|
T Consensus       557 A~N~~G~~~~~v~l  570 (573)
T 3uto_A          557 AKNSYGTKEEIVFL  570 (573)
T ss_dssp             EEETTEEEEEEEEE
T ss_pred             EEeCCCcEEEEEEE
Confidence            99999998877665

>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.43  E-value=8.9e-12  Score=58.30  Aligned_cols=75  Identities=16%  Similarity=0.191  Sum_probs=56.4

Q ss_pred             CeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEeccc----------ceEEEEeccccceEEEEEEEccCC
Q psy4613           2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSE----------RYEVESISRSIFDFKMRLTIKKIT   71 (96)
Q Consensus         2 p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~l~i~~~~   71 (96)
                      |.+..+.....+..|+.+.|.|.+.+  .+.+.|++++..+. ...          ++.+...   .  ....|.|.++.
T Consensus         9 ~~~~~~l~d~~v~eG~~a~f~C~vs~--~p~v~W~knG~~l~-~~~~~~~~~~~~~r~~i~~~---g--~~~~L~I~~v~   80 (112)
T 2e6q_A            9 ARLVAGLEDVQVYDGEDAVFSLDLST--IIQGTWFLNGEELK-SNEPEGQVEPGALRYRIEQK---G--LQHRLILHAVK   80 (112)
T ss_dssp             CCEEECCCCEEEETTCEEEEEEEESS--CCCCEEEESSCBCC-SSCCCTTSCTTSCEEEECCB---T--TEEEEEEESCC
T ss_pred             cEEecCCCCeEEcCCCcEEEEEEECC--CCeEEEEECCEECc-cCcccccccccccEEEEEeC---C--cEEEEEECCCC
Confidence            45666777888999999999999987  77899999977664 233          4443221   1  24579999999


Q ss_pred             CCCCeeEEEEEec
Q psy4613          72 KYDLGSYKCIAKN   84 (96)
Q Consensus        72 ~~d~g~y~c~~~~   84 (96)
                      ..|.|.|.|...+
T Consensus        81 ~~D~G~Y~~~~~~   93 (112)
T 2e6q_A           81 HQDSGALVGFSCP   93 (112)
T ss_dssp             STTCSEEEEEEET
T ss_pred             HHHCccEEEEEEC
Confidence            9999999775544

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*

Probab=99.43  E-value=2.3e-12  Score=70.82  Aligned_cols=75  Identities=20%  Similarity=0.349  Sum_probs=61.2

Q ss_pred             EecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEec
Q psy4613           5 HVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKN   84 (96)
Q Consensus         5 ~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~   84 (96)
                      ...+....+..|+.+.|.|.+.+.|.+.+.|++++..+..                ....|.|.++...|.|.|.|.+.|
T Consensus       311 ~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~i~~----------------~~~~L~i~~v~~~d~G~Y~C~a~N  374 (388)
T 2v5m_A          311 KIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGH----------------SESVLRIESVKKEDKGMYQCFVRN  374 (388)
T ss_dssp             EEESSEEEECTTSCEEEEEEEEEECCCEEEEEETTEECSC----------------CSSEEEESSCCGGGCEEEEEEEEC
T ss_pred             ccCCCcEEecCCCCEEEEEEeccccCCeEEEEECCEECcc----------------CCCEEEEecCChhhCEEEEEEEEc
Confidence            3344556788999999999999999999999998654421                124689999999999999999999


Q ss_pred             CCCceEEEEEe
Q psy4613          85 SLGEVESSIRL   95 (96)
Q Consensus        85 ~~g~~~~~~~l   95 (96)
                      ..|.....+.|
T Consensus       375 ~~G~~~~~~~l  385 (388)
T 2v5m_A          375 DRESAEASAEL  385 (388)
T ss_dssp             SSCEEEEEEEE
T ss_pred             CCCcEEEEEEE
Confidence            99988877765

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A

Probab=99.43  E-value=1.3e-12  Score=69.39  Aligned_cols=79  Identities=30%  Similarity=0.496  Sum_probs=60.1

Q ss_pred             eeeecCCCcEEEEEEeeecccceeEEeeccceeEecc---cceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCC
Q psy4613          10 LVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISS---ERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSL   86 (96)
Q Consensus        10 ~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~   86 (96)
                      ...+..|..+.|.|.+.+.|.+.+.|++++..+....   .++....       ....|.|.++...|.|.|.|.+.|..
T Consensus       205 ~~~~~~g~~v~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~-------~~~~L~i~~v~~~d~G~Y~C~a~N~~  277 (291)
T 1qz1_A          205 NATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSD-------DSSELTIRNVDKNDEAEYVCIAENKA  277 (291)
T ss_dssp             EEETTSCCCEEEEEEEEEESCCEEEEEETTEECCCC--CCSSEEECT-------TSCEEEECSCCGGGCEEEEEEEEETT
T ss_pred             ccccccCceEEEEEEEEEeCCCcEEEEECCEECcCCCCCCcceEEcC-------CCcEEEEEecChhcCEEEEEEEEeCC
Confidence            3457789999999999999999999999876543221   1222211       12579999999999999999999999


Q ss_pred             CceEEEEEe
Q psy4613          87 GEVESSIRL   95 (96)
Q Consensus        87 g~~~~~~~l   95 (96)
                      |.....+.|
T Consensus       278 G~~~~~~~l  286 (291)
T 1qz1_A          278 GEQDASIHL  286 (291)
T ss_dssp             EEEEEEEEE
T ss_pred             CceEEEEEE
Confidence            987766654

>3khq_A B-cell antigen receptor complex-associated protei chain; CD79B, CD79A, IG-beta, BCR, IG domain, V-SET, immunoglobulin protein binding; HET: FLC GSH; 1.70A {Mus musculus} PDB: 3kho_A*

Probab=99.42  E-value=6.1e-12  Score=60.51  Aligned_cols=77  Identities=22%  Similarity=0.275  Sum_probs=56.0

Q ss_pred             EEecCceeeecCCCcEEEEEEeeecccceeEEeecc--cee---EecccceEEEEeccccceEEEEEEEccCCCCCCeeE
Q psy4613           4 IHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQ--GDM---VISSERYEVESISRSIFDFKMRLTIKKITKYDLGSY   78 (96)
Q Consensus         4 ~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y   78 (96)
                      +...+..+.+..|+.+.|.|.+.+.  +.+.|+++.  ...   .....++......     ....|.|.+++..|+|.|
T Consensus        20 v~q~p~~~~v~~G~~v~L~C~~~~~--~~v~W~r~~~g~~~~~l~~~~~r~~~~~~~-----~~~~L~I~~~~~~DsG~Y   92 (133)
T 3khq_A           20 IWQHPRFAAKKRSSMVKFHCYTNHS--GALTWFRKRGSQQPQELVSEEGRIVQTQNG-----SVYTLTIQNIQYEDNGIY   92 (133)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSS--SCEEEEEECTTSCCEECCCTTTTEEEEEET-----TEEEEEECSCCGGGCEEE
T ss_pred             eEEcCceEEEeCCCeEEEEEEeCCC--CEEEEEEeCCCCCCEEEEEeCCCEEEEcCC-----CEEEEEECCCChHHCEEE
Confidence            4555667789999999999999876  889999863  111   1123455443211     246799999999999999


Q ss_pred             EEEEecCCC
Q psy4613          79 KCIAKNSLG   87 (96)
Q Consensus        79 ~c~~~~~~g   87 (96)
                      .|.+.+..|
T Consensus        93 ~C~a~n~~g  101 (133)
T 3khq_A           93 FCKQKCDSA  101 (133)
T ss_dssp             EEEESSCC-
T ss_pred             EEEEEeCCC
Confidence            999998754

>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion; 2.40A {Homo sapiens}

Probab=99.42  E-value=2.1e-11  Score=59.26  Aligned_cols=84  Identities=14%  Similarity=0.195  Sum_probs=58.8

Q ss_pred             cCceeeecCCCcEEEEEEeeecccceeEEeeccceeEe-------cccceEEEEeccccceEEEEEEEccCCCCCCeeEE
Q psy4613           7 PNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVI-------SSERYEVESISRSIFDFKMRLTIKKITKYDLGSYK   79 (96)
Q Consensus         7 ~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~   79 (96)
                      .+..+.+..|+++.|.|.+.+.+.+.+.|++.+...+.       ...++......    .....|.|.+++..|.|.|.
T Consensus        44 ~p~~~~v~~G~~v~L~C~~~~~~~~~i~W~~~~~~~i~~~~~~~~~~~r~~~~~~~----~~~~~L~I~~v~~~DsG~Y~  119 (145)
T 1z9m_A           44 WTSDETVVAGGTVVLKCQVKDHEDSSLQWSNPAQQTLYFGEKRALRDNRIQLVTST----PHELSISISNVALADEGEYT  119 (145)
T ss_dssp             BCCCEEEETTSCEEEEEECSCCTTCCEEEECTTCCEEEETTEECSCCTTEEEEEEC----SSEEEEEECSCCGGGCEEEE
T ss_pred             CCceEEEEcCCCEEEEEEEcCCCCcEEEEECCCCcEEEECCceecccCCEEEecCC----CCeEEEEECCCChhhCEEEE
Confidence            34567789999999999999888889999854322211       12333322111    02468999999999999999


Q ss_pred             EEEecCCCceEEEEEe
Q psy4613          80 CIAKNSLGEVESSIRL   95 (96)
Q Consensus        80 c~~~~~~g~~~~~~~l   95 (96)
                      |.+.+. +.....+.|
T Consensus       120 C~~~n~-~~~~~~~~L  134 (145)
T 1z9m_A          120 CSIFTM-PVRTAKSLV  134 (145)
T ss_dssp             EEECSS-SCEEEEEEE
T ss_pred             EEEEcC-CCceEEEEE
Confidence            999998 766555543

>2q20_A VK1 O18/O8 germline light chain variable domain; Al, light chain amyloidosis, amyloid, immunoglobulin, protein fibril; 1.30A {Homo sapiens} PDB: 2kqm_A 3cdf_A 3cdc_A 2kqn_A 3cdy_A 2q1e_A 3dvi_A 1igm_L 1bww_A 1b0w_A 1bre_A 1qp1_A 3dvf_A 1rei_A 1wtl_A 1ar2_A 1fgv_L 2bx5_A 2uzi_L* 1bvk_A ...

Probab=99.42  E-value=6.7e-12  Score=58.33  Aligned_cols=78  Identities=15%  Similarity=0.336  Sum_probs=55.7

Q ss_pred             eEEecCceeeecCCCcEEEEEEeeecccceeEEeeccc----eeEe-c--------ccceEEEEeccccceEEEEEEEcc
Q psy4613           3 VIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQG----DMVI-S--------SERYEVESISRSIFDFKMRLTIKK   69 (96)
Q Consensus         3 ~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~----~~~~-~--------~~~~~~~~~~~~~~~~~~~l~i~~   69 (96)
                      .+..++..+.+..|+++.|.|.+.+.+.+.+.|++...    ..+. .        ..++.....     .....|.|.+
T Consensus         5 ~v~q~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~R~~~~~~-----~~~~~L~I~~   79 (109)
T 2q20_A            5 QMTQSPSSLSASVGDRVTITCQASQDISNYLNWYQQKPGKAPKLLIYDASNLETGVPSRFSGSGS-----GTDFTFTISS   79 (109)
T ss_dssp             CEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEE-----TTEEEEEESS
T ss_pred             cEEeeCCEEEecCCCcEEEEEeeccCCCCcEEEEEECCCCCCEEEEEEcCccCCCCCCcEEEecc-----CCEEEEEECC
Confidence            45566677889999999999999887778899998631    1111 1        123332210     0235799999


Q ss_pred             CCCCCCeeEEEEEecC
Q psy4613          70 ITKYDLGSYKCIAKNS   85 (96)
Q Consensus        70 ~~~~d~g~y~c~~~~~   85 (96)
                      ++..|+|.|.|.+.+.
T Consensus        80 v~~~DsG~Y~C~~~~~   95 (109)
T 2q20_A           80 LQPEDIATYYCQQYDN   95 (109)
T ss_dssp             CCGGGCEEEEEEECSS
T ss_pred             CChhhCEEEEEEEeeC
Confidence            9999999999999874

>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B

Probab=99.42  E-value=5.5e-12  Score=64.01  Aligned_cols=89  Identities=17%  Similarity=0.222  Sum_probs=60.7

Q ss_pred             EEecCceeeecCCCcEEEEEEeeeccc-----ceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeE
Q psy4613           4 IHVPNQLVGAPIDTDVTLECYVEAYPK-----SINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSY   78 (96)
Q Consensus         4 ~~~~~~~~~~~~g~~~~l~c~~~~~~~-----~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y   78 (96)
                      +..++..+.+..|+.+.|.|.+.+.+.     +.+.|++.+........+..+..  .........|.|.+++..|.|.|
T Consensus         5 v~~p~~~v~v~~G~~v~L~C~~~~~p~~~~~~~~v~W~k~~~~~~~~~~r~~~~~--~~~~~~~~~L~I~~v~~~D~G~Y   82 (202)
T 3bp6_B            5 VTAPKEVYTVDVGSSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLE--EQLPLGKALFHIPSVQVRDSGQY   82 (202)
T ss_dssp             EECSCSEEEEETTSCEEEEEEECTTC---CTTEEEEEEECC--CCCBCSSCEECG--GGGGGTEEEEEECSCCGGGCEEE
T ss_pred             EecCCcCEEEeCCCcEEEEEEecCCCCCCccceEEEEEcCCCcccccCCceEEee--ccccCCeeEEEECCCCHHHCcEE
Confidence            445667788999999999999988775     78999994333332233333221  11011246799999999999999


Q ss_pred             EEEEecCCCceEEEEE
Q psy4613          79 KCIAKNSLGEVESSIR   94 (96)
Q Consensus        79 ~c~~~~~~g~~~~~~~   94 (96)
                      .|.+.+..+.....+.
T Consensus        83 ~C~~~~~~~~~~~~~~   98 (202)
T 3bp6_B           83 RCLVICGAAWDYKYLT   98 (202)
T ss_dssp             EEEEEETTEEEEEEEE
T ss_pred             EEEEEeCCCcceEEEE
Confidence            9999998775544443

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A

Probab=99.42  E-value=8.7e-13  Score=66.30  Aligned_cols=81  Identities=20%  Similarity=0.251  Sum_probs=59.7

Q ss_pred             CeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEec-ccceEEEEeccccceEEEEEEEccCCCCCCeeEEE
Q psy4613           2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVIS-SERYEVESISRSIFDFKMRLTIKKITKYDLGSYKC   80 (96)
Q Consensus         2 p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c   80 (96)
                      |.+...+....+..|..+.|.|.+.+.|.+.+.|++++..+... ..++....        ...|.|.++...|.|.|.|
T Consensus       101 p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~--------~~~L~i~~~~~~d~G~Y~C  172 (191)
T 1epf_A          101 LMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLS--------NNYLQIRGIKKTDEGTYRC  172 (191)
T ss_dssp             SEEEECCSSEECCTTSCEEECCEEECSSCCEEEEEETTEEGGGGCCTTEEECT--------TSCEEETTCCGGGCEEEEE
T ss_pred             ceEecCCCcEeecCCCeEEEEEEECCCCCCEEEEEECCEEeeccCCceEEEec--------CCeEEECCCChhhCEEEEE
Confidence            44444555667889999999999999999999999987655321 12322211        1368999999999999999


Q ss_pred             EEecCCCceE
Q psy4613          81 IAKNSLGEVE   90 (96)
Q Consensus        81 ~~~~~~g~~~   90 (96)
                      .+.|..+...
T Consensus       173 ~a~n~~~~~~  182 (191)
T 1epf_A          173 EGRILARGEI  182 (191)
T ss_dssp             EEEEGGGTEE
T ss_pred             EEEEecceeE
Confidence            9999876443

>2e27_L Anti-ciguatoxin antibody, light chain; immunoglobulin fold, immune system; HET: AB0; 1.70A {Mus musculus} PDB: 3iy1_A

Probab=99.41  E-value=5.8e-12  Score=59.49  Aligned_cols=78  Identities=17%  Similarity=0.318  Sum_probs=55.5

Q ss_pred             eEEecCceeeecCCCcEEEEEEeeecccceeEEeeccc----eeEe-c--------ccceEEEEeccccceEEEEEEEcc
Q psy4613           3 VIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQG----DMVI-S--------SERYEVESISRSIFDFKMRLTIKK   69 (96)
Q Consensus         3 ~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~----~~~~-~--------~~~~~~~~~~~~~~~~~~~l~i~~   69 (96)
                      .+..++..+.+..|++++|.|.+.+.+.+.+.|++...    ..+. .        ..++.....     .....|.|.+
T Consensus         5 ~v~q~p~~v~v~~G~~vtL~C~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~R~~~~~~-----~~~~~L~I~~   79 (119)
T 2e27_L            5 QMTQSPSSLSASLGGKVTITCKANQDIKKKIAWYQHKPGKGPRLLIYYTSTLKSGISSRFSGSGS-----GRDYSFSISN   79 (119)
T ss_dssp             CEEEECSEEEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEE-----TTEEEEEECS
T ss_pred             eeEecCCeEEEeCCCCEEEEEEeCCCCCceEEEEEECCCCCCEEEEEECCccCCCCCCcEEEEcc-----CCEEEEEECC
Confidence            45566677889999999999999887778999998531    1111 1        123332210     0245799999


Q ss_pred             CCCCCCeeEEEEEecC
Q psy4613          70 ITKYDLGSYKCIAKNS   85 (96)
Q Consensus        70 ~~~~d~g~y~c~~~~~   85 (96)
                      ++.+|+|.|.|.+.+.
T Consensus        80 v~~~DsG~Y~C~~~~~   95 (119)
T 2e27_L           80 LEPEDAATYYCLQYDN   95 (119)
T ss_dssp             CCGGGCEEEEEEECGG
T ss_pred             CChHHCEEEEEEEccC
Confidence            9999999999999874

>2ywz_A NEW antigen receptor variable domain; IG VNAR, immune system; 2.21A {Orectolobus maculatus} PDB: 2ywy_A

Probab=99.41  E-value=2e-11  Score=56.91  Aligned_cols=79  Identities=22%  Similarity=0.325  Sum_probs=55.9

Q ss_pred             eEEecCceeeecCCCcEEEEEEeeec--ccceeEEeeccc-----eeEecccceEEEEeccccceEEEEEEEccCCCCCC
Q psy4613           3 VIHVPNQLVGAPIDTDVTLECYVEAY--PKSINYWVRDQG-----DMVISSERYEVESISRSIFDFKMRLTIKKITKYDL   75 (96)
Q Consensus         3 ~~~~~~~~~~~~~g~~~~l~c~~~~~--~~~~~~w~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~   75 (96)
                      .+...+..+.+..|++++|.|.+.+.  +.+.+.|++...     .++....++........   ....|.|.+++..|+
T Consensus         2 ~v~q~p~~~~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~r~~~~~~~~~---~~~~L~I~~v~~~Ds   78 (111)
T 2ywz_A            2 WVDQTPRTITKETGESLTIKCVLKDHSCGLSSTTWYRTQLGSTNEKTISIGGRYDETVDKGS---KSFSLRISDLRVEDS   78 (111)
T ss_dssp             EEEEECSEEEECTTCCEEEEEEEESCSSCCCEEEEEEEETTCCCCEECCSBTTEEEEEETTT---TEEEEEECSCCGGGC
T ss_pred             eeEECCCcEEEccCCCEEEEeEECCCCCCCCEEEEEEeCCCCCceEeeEeCCCEEEEEeCCC---CEEEEEECCCChhcC
Confidence            45566777889999999999999875  467899998531     11112334443221111   246799999999999


Q ss_pred             eeEEEEEec
Q psy4613          76 GSYKCIAKN   84 (96)
Q Consensus        76 g~y~c~~~~   84 (96)
                      |.|.|.+.+
T Consensus        79 G~Y~C~~~~   87 (111)
T 2ywz_A           79 GTYKCQADY   87 (111)
T ss_dssp             EEEEEEEEE
T ss_pred             EEEEEEEEc
Confidence            999999987

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}

Probab=99.41  E-value=1.1e-12  Score=72.36  Aligned_cols=85  Identities=26%  Similarity=0.443  Sum_probs=65.3

Q ss_pred             CeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEE
Q psy4613           2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCI   81 (96)
Q Consensus         2 p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~   81 (96)
                      |.+...+....+..|..+.|.|.+.+.|.+.+.|++++..+. ...+.....        ...|.|..+...|.|.|.|.
T Consensus       313 p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~g~~~~-~~~~~~~~~--------~~~L~i~~v~~~d~G~Y~C~  383 (403)
T 3laf_A          313 PWFLNHPSNLYAYESMDIEFECAVSGKPVPTVNWMKNGDVVI-PSDYFQIVG--------GSNLRILGVVKSDEGFYQCV  383 (403)
T ss_dssp             EEEEECCCCEECCTTCCEEECCEEEEESCCEEEEEETTEECC-CSSSEEEET--------TTEEEESSCCGGGCEEEEEE
T ss_pred             CcEeecCcceEEecCCeEEEEEEEeeccCCEEEEEECCEECC-CCCcEEEec--------CccEEEeccccccCEEEEEE
Confidence            344445555667889999999999999999999999876543 233333221        24689999999999999999


Q ss_pred             EecCCCceEEEEEe
Q psy4613          82 AKNSLGEVESSIRL   95 (96)
Q Consensus        82 ~~~~~g~~~~~~~l   95 (96)
                      +.|..|.....+.|
T Consensus       384 a~N~~G~~~~~~~l  397 (403)
T 3laf_A          384 AENEAGNAQSSAQL  397 (403)
T ss_dssp             EEETTEEEEEEEEE
T ss_pred             EEcCCceEEEEEEE
Confidence            99999988877765

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*

Probab=99.40  E-value=4.2e-11  Score=61.36  Aligned_cols=87  Identities=18%  Similarity=0.242  Sum_probs=58.4

Q ss_pred             CceeeecCCCcEEEEEEeeeccc--ceeEEeeccceeEecccceEEEEeccc---cceEEEEEEEccCCCCCCeeEEEEE
Q psy4613           8 NQLVGAPIDTDVTLECYVEAYPK--SINYWVRDQGDMVISSERYEVESISRS---IFDFKMRLTIKKITKYDLGSYKCIA   82 (96)
Q Consensus         8 ~~~~~~~~g~~~~l~c~~~~~~~--~~~~w~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~i~~~~~~d~g~y~c~~   82 (96)
                      ...+.+..|+.+.|.|.+.+.+.  +.+.|++++..+... ...........   .......|.|.+++..|+|.|.|.+
T Consensus       112 ~~~~~v~~G~~v~L~C~~~g~p~~~~~i~W~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a  190 (213)
T 2x1w_L          112 SHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHK-KLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAA  190 (213)
T ss_dssp             CSCEEEETTCCEEEEEEEEECTTBCCEEEEECSCSSCCSE-EEEEEEECCCSSCSCEEEEEEEEESSCCGGGCEEEEEEE
T ss_pred             CCCeEEcCCCCEEEEEEEECCCCCceEEEEEecCCccceE-EEeccccccccCccceeeeEEEEECCCCcccCEEEEEEE
Confidence            34447889999999999998554  468999876543111 00000000000   0123468999999999999999999


Q ss_pred             ecCCCceEEEEEe
Q psy4613          83 KNSLGEVESSIRL   95 (96)
Q Consensus        83 ~~~~g~~~~~~~l   95 (96)
                      .|..|.....+.|
T Consensus       191 ~N~~g~~~~~~~l  203 (213)
T 2x1w_L          191 SSGLMTKKNSTFV  203 (213)
T ss_dssp             ECSSCEEEEEEEE
T ss_pred             ecCCCcEEEEEEE
Confidence            9999987766654

>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R

Probab=99.40  E-value=2.7e-12  Score=69.02  Aligned_cols=73  Identities=18%  Similarity=0.224  Sum_probs=57.0

Q ss_pred             eeecCCCcEEEEEEeeecccc-eeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCce
Q psy4613          11 VGAPIDTDVTLECYVEAYPKS-INYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEV   89 (96)
Q Consensus        11 ~~~~~g~~~~l~c~~~~~~~~-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~   89 (96)
                      ..+..|..+.|.|.+.+.|.| .+.|++++..+. .  ....         ....|.|.++...|.|.|.|.+.|..|..
T Consensus       227 ~~~~~g~~v~l~C~~~g~P~p~~v~W~~~~~~l~-~--~~~~---------~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~  294 (313)
T 4fqp_A          227 NWYLGQNEATLTCDARSNPEPTGYNWSTTMGPLP-P--FAVA---------QGAQLLIRPVDKPINTTLICNVTNALGAR  294 (313)
T ss_dssp             CEETTCCCEEEEEEEEEESCCCEEEEEETTBSCC-T--TEEE---------ETTEEEECCCSSCCEEEEEEEEECSSCEE
T ss_pred             eeecCCCeEEEEEEecCCCCCcEEEEEECCEECC-C--ceEE---------eCCEEEECcCChhhCEEEEEEEEeCCCcE
Confidence            345668899999999999988 699999876543 1  1111         12468999999999999999999999988


Q ss_pred             EEEEEe
Q psy4613          90 ESSIRL   95 (96)
Q Consensus        90 ~~~~~l   95 (96)
                      ...+.|
T Consensus       295 ~~~~~l  300 (313)
T 4fqp_A          295 QAELTV  300 (313)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            777655

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}

Probab=99.40  E-value=3e-11  Score=64.12  Aligned_cols=83  Identities=24%  Similarity=0.388  Sum_probs=63.2

Q ss_pred             CCeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEE
Q psy4613           1 HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKC   80 (96)
Q Consensus         1 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c   80 (96)
                      +|.+...+....+..|+.+.|.|.+.+.|. .+.|++.++.......++......     ....|.|.+++..|.|.|.|
T Consensus         4 ~p~v~~~~~~~~v~~G~~v~l~C~~~~~p~-~v~W~~~~g~~~~~~~~~~~~~~~-----~~~~L~i~~~~~~D~G~Y~C   77 (291)
T 2wim_A            4 LLQVTISLSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIISTQRVVVQKEG-----VRSRLTIYNANIEDAGIYRC   77 (291)
T ss_dssp             CCEEEESCSEEEEETTCCEEEEEEEESCCS-EEECBCTTCCBCCCBTTEEEEEET-----TEEEEEECSCCGGGCEEEEE
T ss_pred             CceEEEeccceEecCCCcEEEEEEEeCCCC-ceEEECCCCcCccCCCcEEEecCC-----CEEEEEEccCCcccCEEEEE
Confidence            467778888889999999999999998764 899998434433334454443211     24679999999999999999


Q ss_pred             EEecCCCce
Q psy4613          81 IAKNSLGEV   89 (96)
Q Consensus        81 ~~~~~~g~~   89 (96)
                      .+.+..|..
T Consensus        78 ~~~n~~g~~   86 (291)
T 2wim_A           78 QATDAKGQT   86 (291)
T ss_dssp             EEECSSSCE
T ss_pred             EEecccCce
Confidence            999988765

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}

Probab=99.40  E-value=6.5e-12  Score=67.34  Aligned_cols=85  Identities=21%  Similarity=0.311  Sum_probs=62.2

Q ss_pred             CCeEEecCceeeecCCCcEEEEEEeeec-ccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEE
Q psy4613           1 HPVIHVPNQLVGAPIDTDVTLECYVEAY-PKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYK   79 (96)
Q Consensus         1 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~-~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~   79 (96)
                      +|.+..+. ...+..|+.+.|.|.+.+. |.+.+.|++++..+. ...++....       ....|.|.+++..|.|.|.
T Consensus         7 ~P~~~~~~-~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~-~~~~~~~~~-------~~~~L~i~~~~~~d~G~Y~   77 (317)
T 2y25_A            7 GPHFVEYL-SWEVTGECNVLLKCKVANIKKETHIVWYKDEREIS-VDEKHDFKD-------GICTLLITEFSKKDAGIYE   77 (317)
T ss_dssp             CCEEEEEE-EEEEETTTEEEEEEEEESCCTTCEEEEEETTEEEC-CSCC------------CCEEEEETTCCSTTCSCEE
T ss_pred             CCcEeeee-eEEECCCCeEEEEEEEcCCCCCCEEEEEECCeEcC-CCCcEEEEC-------CeEEEEEccCCcccCeEEE
Confidence            45665444 4778999999999999887 778999999875543 233333322       2368999999999999999


Q ss_pred             EEEecCCCceEEEEE
Q psy4613          80 CIAKNSLGEVESSIR   94 (96)
Q Consensus        80 c~~~~~~g~~~~~~~   94 (96)
                      |.+.+..|.....+.
T Consensus        78 C~~~n~~g~~~~~~~   92 (317)
T 2y25_A           78 VILKDDRGKDKSRLK   92 (317)
T ss_dssp             EEEESSSCEEEEEEC
T ss_pred             EEEECCCCcEEEEEE
Confidence            999998887655543

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}

Probab=99.40  E-value=1.6e-11  Score=61.82  Aligned_cols=81  Identities=19%  Similarity=0.316  Sum_probs=61.2

Q ss_pred             ceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCC-CCCeeEEEEEecCCC
Q psy4613           9 QLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITK-YDLGSYKCIAKNSLG   87 (96)
Q Consensus         9 ~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~-~d~g~y~c~~~~~~g   87 (96)
                      ....+..|..+.|.|.+.+.|.+.+.|++++..+. ...+.......     ....|.|.++.. .|.|.|.|.+.|..|
T Consensus       111 ~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~-~~~~~~~~~~~-----~~~~L~i~~~~~~~d~G~Y~C~a~n~~g  184 (197)
T 3lcy_A          111 EKYYGAVGSTLRLHVMYIGRPVPAMTWFHGQKLLQ-NSENITIENTE-----HYTHLVMKNVQRKTHAGKYKVQLSNVFG  184 (197)
T ss_dssp             SEEEEETTSCEEEEEEEEEESCCEEEEEETTEECC-CCSSEEEEECS-----SEEEEEESSCCHHHHCEEEEEEEECSSC
T ss_pred             cceeecCCCeEEEEEEEeeeeCCeeEEeECCEECC-CCCceEEEEcC-----CEEEEEEccccchhhCceEEEEEEcCcC
Confidence            33456789999999999999999999999865543 33344333211     236799999985 899999999999999


Q ss_pred             ceEEEEEe
Q psy4613          88 EVESSIRL   95 (96)
Q Consensus        88 ~~~~~~~l   95 (96)
                      .....+.|
T Consensus       185 ~~~~~~~l  192 (197)
T 3lcy_A          185 TVDAILDV  192 (197)
T ss_dssp             EEEEEEEE
T ss_pred             ceEEEEEE
Confidence            88776654

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}

Probab=99.40  E-value=4.1e-11  Score=62.13  Aligned_cols=88  Identities=23%  Similarity=0.349  Sum_probs=61.4

Q ss_pred             CceeeecCCCcEEEEEEeeecccceeEEee----ccceeEecccceE-EE-EeccccceEEEEEEEccCCCCCCeeEEEE
Q psy4613           8 NQLVGAPIDTDVTLECYVEAYPKSINYWVR----DQGDMVISSERYE-VE-SISRSIFDFKMRLTIKKITKYDLGSYKCI   81 (96)
Q Consensus         8 ~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~----~~~~~~~~~~~~~-~~-~~~~~~~~~~~~l~i~~~~~~d~g~y~c~   81 (96)
                      +....+..|..+.|.|.+.+.|.+.+.|++    ++..+........ .. ............|.|.++...|.|.|.|.
T Consensus       121 ~~~~~~~~g~~v~L~C~~~~~p~p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~  200 (241)
T 3grw_A          121 PANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANVSERDGGEYLCR  200 (241)
T ss_dssp             TCSEECCTTCCEEEEEEEECSSCCEEEEEEECCSSSCSSCTTTCCCEEEEEEEECSBSEEEEEEEECSCCGGGCEEEEEE
T ss_pred             CccceecCCCEEEEEEEEecCCCCEEEEEEcccCCCcccCCCCceeeeeeeEeeeeecCCceEEEECcCCcccCcEEEEE
Confidence            344567789999999999999999999998    5443322111111 11 11111112357799999999999999999


Q ss_pred             EecCCCceEEEEEe
Q psy4613          82 AKNSLGEVESSIRL   95 (96)
Q Consensus        82 ~~~~~g~~~~~~~l   95 (96)
                      +.|..|.....+.|
T Consensus       201 a~N~~g~~~~~~~l  214 (241)
T 3grw_A          201 ATNFIGVAEKAFWL  214 (241)
T ss_dssp             EECSSCEEEEEEEE
T ss_pred             EecCcceEEEEEEE
Confidence            99999988777654

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C

Probab=99.39  E-value=9.7e-13  Score=67.72  Aligned_cols=78  Identities=19%  Similarity=0.472  Sum_probs=58.3

Q ss_pred             ceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccce---EEEEeccccceEEEEEEEccCCCCCCeeEEEEEecC
Q psy4613           9 QLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERY---EVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNS   85 (96)
Q Consensus         9 ~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~   85 (96)
                      ....+..|+.+.|.|.+.+.+.+.+.|++++..+.. ..+.   ....       ....|.|.+++..|.|.|.|.+.+.
T Consensus        27 ~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~-~~~~~~~~~~~-------~~~~L~i~~~~~~d~G~Y~C~~~n~   98 (231)
T 3ojm_B           27 RLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQ-EHRIGGYKVRN-------QHWSLIMESVVPSDKGNYTCVVENE   98 (231)
T ss_dssp             SCEEEETTSCEEEECCEEEESCCEEEEEETTEECCG-GGSTTCCEEEG-------GGTEEEECSCCGGGCEEEEEEEEET
T ss_pred             eeEEEccCCCEEEEEecccCCCCeEEEEECCccccc-cccccceeeec-------CcceEEEecCCcccCEEEEEEEecc
Confidence            556788999999999999989999999998765432 1111   1111       1246899999999999999999998


Q ss_pred             CCceEEEEE
Q psy4613          86 LGEVESSIR   94 (96)
Q Consensus        86 ~g~~~~~~~   94 (96)
                      .|.......
T Consensus        99 ~~~~~~~~~  107 (231)
T 3ojm_B           99 YGSINHTYH  107 (231)
T ss_dssp             TEEEEEEEE
T ss_pred             cCcccccEE
Confidence            776654443

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4

Probab=99.39  E-value=1.5e-11  Score=61.38  Aligned_cols=83  Identities=17%  Similarity=0.240  Sum_probs=59.2

Q ss_pred             CeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEE
Q psy4613           2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCI   81 (96)
Q Consensus         2 p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~   81 (96)
                      |.+...+..+.+..|+.+.|.|.+.+.+.+.+.|++++..+. ...+.......   ......|.|.+++..|.|.|.|.
T Consensus         3 ~~~~~~p~~~~v~~G~~v~l~C~~~~~p~~~v~W~k~~~~~~-~~~~~~~~~~~---~~~~~~L~i~~~~~~d~G~Y~C~   78 (182)
T 1rhf_A            3 LKLMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQ-NLDQLYIPVSE---QHWIGFLSLKSVERSDAGRYWCQ   78 (182)
T ss_dssp             ----CCCEEEEEETTCCEEEEEEEESCSSCCEEEEETTEECC-SSEEEEEEEET---TEEEEEEEESSCCGGGCEEEEEE
T ss_pred             CEEEeCCcceEEeCCCcEEEEEEEeCCCCCeEEEEECCeecC-CCCceEEEecC---CCceEEEEEeecCcccCeEEEEE
Confidence            566667778889999999999999998889999999865543 22222222111   11246899999999999999999


Q ss_pred             EecCCCc
Q psy4613          82 AKNSLGE   88 (96)
Q Consensus        82 ~~~~~g~   88 (96)
                      +.+..+.
T Consensus        79 ~~~~~~~   85 (182)
T 1rhf_A           79 VEDGGET   85 (182)
T ss_dssp             ESSCTTC
T ss_pred             EEcCCCc
Confidence            9987654

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A

Probab=99.38  E-value=1.8e-12  Score=65.96  Aligned_cols=73  Identities=26%  Similarity=0.429  Sum_probs=56.6

Q ss_pred             ceeeecCCCcEEEEEEe-eecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCC
Q psy4613           9 QLVGAPIDTDVTLECYV-EAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLG   87 (96)
Q Consensus         9 ~~~~~~~g~~~~l~c~~-~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g   87 (96)
                      ....+..|..+.|.|.+ .+.|.+.+.|++++..+.....+....         ...|.|..+...|.|.|.|.+.|..|
T Consensus       119 ~~~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~l~~~~~~~~~~---------~~~L~i~~~~~~d~G~Y~C~a~N~~g  189 (212)
T 2v9r_A          119 SDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERITIR---------GGKLMITYTRKSDAGKYVCVGTNMVG  189 (212)
T ss_dssp             CCEEEETTSCEEEECBCCCEESCCEEEEEETTEEECTTSTTEEEE---------TTEEEESSCCGGGCEEEEEEEEETTE
T ss_pred             CceEecCCCcEEEEEecCCCCCCCEEEEEECCccCCCCcceEEcc---------CCeEEEeeCCHhhCeeEEEEEecccC
Confidence            44567889999999998 888999999999876554222333221         24689999999999999999999888


Q ss_pred             ceE
Q psy4613          88 EVE   90 (96)
Q Consensus        88 ~~~   90 (96)
                      ...
T Consensus       190 ~~~  192 (212)
T 2v9r_A          190 ERE  192 (212)
T ss_dssp             EEE
T ss_pred             cee
Confidence            643

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}

Probab=99.38  E-value=9.9e-12  Score=66.52  Aligned_cols=81  Identities=17%  Similarity=0.311  Sum_probs=58.6

Q ss_pred             eEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEE
Q psy4613           3 VIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIA   82 (96)
Q Consensus         3 ~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~   82 (96)
                      .+...+....+..|+.+.|.|.+.+.|.+.+.|++++..+.. .....         .....|.+..+  .|.|.|.|.+
T Consensus       207 ~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~l~~-~~~~~---------~~~~~L~i~~~--~d~G~Y~C~a  274 (304)
T 2yd9_A          207 RFSILPMSHEIMPGGNVNITCVAVGSPMPYVKWMQGAEDLTP-EDDMP---------VGRNVLELTDV--KDSANYTCVA  274 (304)
T ss_dssp             EEEECCCCBCCCTTCCEEEEEEEEEESCCEEEEEETTEECSC-SSSCC---------BSEEEEEECSC--CSCEEEEEEE
T ss_pred             cEEecCCceEEcCCCeEEEEEEEeeeCCCEEEEEECCEECCC-ccccc---------CCcEEEEEccc--ccCEEEEEEE
Confidence            344444455678899999999999999999999998655432 11111         02345666665  5899999999


Q ss_pred             ecCCCceEEEEEe
Q psy4613          83 KNSLGEVESSIRL   95 (96)
Q Consensus        83 ~~~~g~~~~~~~l   95 (96)
                      .|..|.....+.|
T Consensus       275 ~N~~G~~~~~~~l  287 (304)
T 2yd9_A          275 MSSLGVIEAVAQI  287 (304)
T ss_dssp             EETTEEEEEEEEE
T ss_pred             EeCCCcEEEEEEE
Confidence            9999988777665

>3moq_A NEW antigen receptor variable domain, P3(40) PEPT amyloid beta A4 protein; AB-ignar, AB-12Y-2, glycoprotein, membran protease inhibitor; 2.05A {Orectolobus maculatus} PDB: 2z8w_C 2z8v_C 1ves_A 1ver_A

Probab=99.38  E-value=4.6e-11  Score=56.96  Aligned_cols=82  Identities=18%  Similarity=0.261  Sum_probs=57.6

Q ss_pred             CeEEecCceeeecCCCcEEEEEEeeec--ccceeEEeecc--ce---eEecccceEEEEeccccceEEEEEEEccCCCCC
Q psy4613           2 PVIHVPNQLVGAPIDTDVTLECYVEAY--PKSINYWVRDQ--GD---MVISSERYEVESISRSIFDFKMRLTIKKITKYD   74 (96)
Q Consensus         2 p~~~~~~~~~~~~~g~~~~l~c~~~~~--~~~~~~w~~~~--~~---~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d   74 (96)
                      +.+..++..+.+..|++++|.|.+.+.  +.+.+.|++..  ..   +.....++........   ....|.|.+++.+|
T Consensus         1 ~~V~Q~p~~v~v~~G~svtL~C~~s~~~~~~~~v~Wyrq~~g~~~~~li~~~~R~~~~~~~~~---~~~sL~I~~v~~~D   77 (126)
T 3moq_A            1 AWVDQTPRTATKETGESLTINCVLRDASFELKDTGWYRTKLGSTNEQSISIGGRYVETVNKGS---KSFSLRISDLRVED   77 (126)
T ss_dssp             CEEEEECSEEEEETTCCEEEEEEEESCSSCCCEEEEEEEETTCCCCEECCCBTTEEEEEETTT---TEEEEEECSCCGGG
T ss_pred             CceEECCceEEEeCCCCEEEEEEeecCccCCceEEEEEeCCCCCceEEEEeCCcEEEEEeCCC---CEEEEEECcCChHh
Confidence            356677888889999999999998865  45679999842  11   1112344443322111   24679999999999


Q ss_pred             CeeEEEEEecCC
Q psy4613          75 LGSYKCIAKNSL   86 (96)
Q Consensus        75 ~g~y~c~~~~~~   86 (96)
                      +|.|.|.+.+..
T Consensus        78 sG~Y~C~~~~~~   89 (126)
T 3moq_A           78 SGTYKCQAFYVF   89 (126)
T ss_dssp             CEEEEEEEEEEE
T ss_pred             CEEEEEEEEEcC
Confidence            999999988743

>1i8k_A Epidermal growth factor receptor antibody MR1SCFV light chain; antibody-peptide complex, immunoglobulin fold, type II' beta turn., immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 PDB: 1i8i_A

Probab=99.37  E-value=1.4e-11  Score=57.10  Aligned_cols=78  Identities=15%  Similarity=0.332  Sum_probs=55.3

Q ss_pred             eEEecCceeeecCCCcEEEEEEeeecccceeEEeecc--c--eeEe-c--------ccceEEEEeccccceEEEEEEEcc
Q psy4613           3 VIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQ--G--DMVI-S--------SERYEVESISRSIFDFKMRLTIKK   69 (96)
Q Consensus         3 ~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~--~--~~~~-~--------~~~~~~~~~~~~~~~~~~~l~i~~   69 (96)
                      .+..++..+.+..|++++|.|.+.+.+.+.+.|++..  .  ..+. .        ..++.....     .....|.|.+
T Consensus         3 ~v~q~p~~~~~~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~-----~~~~~L~I~~   77 (107)
T 1i8k_A            3 ELTQSPASLSVATGEKVTIRCMTSTDIDDDMNWYQQKPGEPPKFLISEGNTLRPGVPSRFSSSGT-----GTDFVFTIEN   77 (107)
T ss_dssp             CEEEECSEEECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEE-----TTEEEEEESS
T ss_pred             ceEeCCCeEEecCCCCEEEEEEECCCCCCcEEEEEECCCCCCEEEEEecCccCCCCCCCEEEEcc-----CCEEEEEECC
Confidence            3455667788999999999999988777889999853  1  1111 1        123332210     0235799999


Q ss_pred             CCCCCCeeEEEEEecC
Q psy4613          70 ITKYDLGSYKCIAKNS   85 (96)
Q Consensus        70 ~~~~d~g~y~c~~~~~   85 (96)
                      ++.+|+|.|.|.+.+.
T Consensus        78 v~~~DsG~Y~C~~~~~   93 (107)
T 1i8k_A           78 TLSEDVGDYYCLQSFN   93 (107)
T ss_dssp             CCGGGCEEEEEEECSS
T ss_pred             CCHHHCEEEEEEEeeC
Confidence            9999999999999875

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A

Probab=99.37  E-value=4.6e-11  Score=63.44  Aligned_cols=84  Identities=18%  Similarity=0.203  Sum_probs=61.7

Q ss_pred             CCeEEecCceeeecCCCcEEEEEEeeecc-cceeEEee-ccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeE
Q psy4613           1 HPVIHVPNQLVGAPIDTDVTLECYVEAYP-KSINYWVR-DQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSY   78 (96)
Q Consensus         1 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~-~~~~~w~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y   78 (96)
                      ++.+...+....+..|+.+.|.|.+.+.+ .+.+.|++ ++..+.....++......    .....|.|.+++..|.|.|
T Consensus         2 ~~~v~~~p~~~~v~~G~~v~l~C~~~~~~~~~~i~W~~~~g~~~~~~~~~~~~~~~~----~~~~~L~i~~~~~~D~G~Y   77 (291)
T 1qz1_A            2 VLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWND----DDSSTLTIYNANIDDAGIY   77 (291)
T ss_dssp             CCCEEEESSSEEEETTCCEEEEEEESSCCSCCEEEEECTTSCBCCSSCSSEEEEEEE----TTEEEEEECSCCGGGCEEE
T ss_pred             CcceEecCCCceEeCCCeEEEEEEeCCCCCCcEeEEECCCCeECccCCceEEEEEcC----CCeEEEEEecCCCCCCEEE
Confidence            45677777778899999999999998876 68999998 444333223333332211    0246899999999999999


Q ss_pred             EEEEecCCCc
Q psy4613          79 KCIAKNSLGE   88 (96)
Q Consensus        79 ~c~~~~~~g~   88 (96)
                      .|.+.+..|.
T Consensus        78 ~C~~~n~~g~   87 (291)
T 1qz1_A           78 KCVVTAEDGT   87 (291)
T ss_dssp             EEEEECTTSC
T ss_pred             EEEEEcCCCC
Confidence            9999998764

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4

Probab=99.37  E-value=1.3e-11  Score=62.77  Aligned_cols=78  Identities=19%  Similarity=0.368  Sum_probs=59.9

Q ss_pred             CCeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEe-----------cccceEEEEeccccceEEEEEEEcc
Q psy4613           1 HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVI-----------SSERYEVESISRSIFDFKMRLTIKK   69 (96)
Q Consensus         1 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~l~i~~   69 (96)
                      +..+..++..+.+..|+.+.|.|.+.+.+.+.+.|++++.....           ...+....         ...|.|.+
T Consensus         1 ~~~v~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~---------~~~L~i~~   71 (212)
T 1f97_A            1 KGSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFS---------SSGITFSS   71 (212)
T ss_dssp             CCEEECSCSEEEEETTCCEEEECEEESCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEEE---------TTEEEESC
T ss_pred             CceEEecCCCeEEEcCCCEEEEeEeCCCCCcEEEEEECCCceeeEEecCCcccccccCcEEee---------ceeEEEcc
Confidence            34566777888899999999999999888899999987654211           11222221         25689999


Q ss_pred             CCCCCCeeEEEEEecCCC
Q psy4613          70 ITKYDLGSYKCIAKNSLG   87 (96)
Q Consensus        70 ~~~~d~g~y~c~~~~~~g   87 (96)
                      ++..|.|.|.|.+.+..|
T Consensus        72 v~~~D~G~Y~C~~~~~~g   89 (212)
T 1f97_A           72 VTRKDNGEYTCMVSEEGG   89 (212)
T ss_dssp             CCGGGCEEEEEEEEETTS
T ss_pred             cCcccCeEEEEEEEccCC
Confidence            999999999999998766

>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}

Probab=99.37  E-value=1.1e-11  Score=63.03  Aligned_cols=79  Identities=8%  Similarity=0.094  Sum_probs=56.8

Q ss_pred             ceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCc
Q psy4613           9 QLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGE   88 (96)
Q Consensus         9 ~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~   88 (96)
                      ....+..+..+.+.|.+.+.|.|.+.|++++..+... ...    .........+.|.|..+...|.|.|.|.+.|..|.
T Consensus       126 ~~~~~~~~~~~~~~c~~~g~p~p~i~W~~~~~~~~~~-~~~----~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~g~  200 (218)
T 4frw_A          126 PALEEGQGLTLAASCTAEGSPAPSVTWDTEVKGTTSS-RSF----KHSRSAAVTSEFHLVPSRSMNGQPLTCVVSHPGLL  200 (218)
T ss_dssp             SCEETTCCSEEEEEEEEEEBSCCEEEEEESSCCEEEE-EEE----ECSSSEEEEEEEEECCCGGGTTCEEEEEEECTTCS
T ss_pred             eeeeeeeccccceeeeccCCcCceEEEEECCcccccC-ceE----ecCCcEEEEEEEEEeeCCHHhCeEEEEEEEeCCCC
Confidence            3345667889999999999999999999986554321 110    01111113467999999999999999999999886


Q ss_pred             eEEE
Q psy4613          89 VESS   92 (96)
Q Consensus        89 ~~~~   92 (96)
                      ....
T Consensus       201 ~~~~  204 (218)
T 4frw_A          201 QDQR  204 (218)
T ss_dssp             SCEE
T ss_pred             eEEE
Confidence            5433

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}

Probab=99.37  E-value=3.7e-12  Score=65.49  Aligned_cols=72  Identities=15%  Similarity=0.196  Sum_probs=57.4

Q ss_pred             CeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEE
Q psy4613           2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCI   81 (96)
Q Consensus         2 p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~   81 (96)
                      |.+...+....+..|..+.|.|.+.+.|.+.+.|++++..+. ..              ....|.|.++...|.|.|.|.
T Consensus       119 p~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~v~W~~~~~~~~-~~--------------~~~~L~i~~v~~~d~G~Y~C~  183 (218)
T 3k0w_A          119 LQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLT-HE--------------TKKLYMVPYVDLEHQGTYWCH  183 (218)
T ss_dssp             CEEEECCCCEEECTTCCEEEECEEEBSSCCEEEEEETTEECT-TC--------------CSSEEEESSCCGGGCEEEEEE
T ss_pred             ceEEECCCceeecCCCcEEEEEEecccCCCeEEEEECCEECC-CC--------------CCCEEEEeecChhcCEEEEEE
Confidence            445555566778899999999999999999999999865442 11              114688999999999999999


Q ss_pred             EecCCCc
Q psy4613          82 AKNSLGE   88 (96)
Q Consensus        82 ~~~~~g~   88 (96)
                      +.|..|.
T Consensus       184 a~n~~g~  190 (218)
T 3k0w_A          184 VYNDRDS  190 (218)
T ss_dssp             EECSSCE
T ss_pred             EEcCCCC
Confidence            9998775

>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.37  E-value=8.1e-12  Score=57.28  Aligned_cols=69  Identities=26%  Similarity=0.442  Sum_probs=52.3

Q ss_pred             eeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecC
Q psy4613          10 LVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNS   85 (96)
Q Consensus        10 ~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~   85 (96)
                      .+.+..|+.+.|.|.+. .+.+.+.|++++..+. ...++.+....     ....|.|.++...|.|.|.|.+.+.
T Consensus        20 ~~~v~~G~~v~L~C~~~-~p~~~v~W~k~g~~~~-~~~~~~~~~~~-----~~~~L~I~~~~~~D~G~Y~C~a~~~   88 (102)
T 2eo1_A           20 EVQAEAGASATLSCEVA-QAQTEVTWYKDGKKLS-SSSKVRVEAVG-----CTRRLVVQQAGQAEAGEYSCEAGGQ   88 (102)
T ss_dssp             EEEEETTCCEEECCBCS-CSSSCCEEEETTEECC-CCSSEEEEEET-----TEEEEEETTCCTTTCSCEEEEETTE
T ss_pred             cEEEeCCCcEEEEEEec-CCCCceEEEECCEECC-CCCCEEEEEcC-----CEEEEEECCCCcccCEEEEEEcCCC
Confidence            45688999999999988 7888999999876553 23344443211     2367999999999999999998654

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.37  E-value=1e-12  Score=74.23  Aligned_cols=80  Identities=24%  Similarity=0.319  Sum_probs=60.3

Q ss_pred             CceeeecCCCcEEEEEEeeecccceeEEeeccceeEec--ccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecC
Q psy4613           8 NQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVIS--SERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNS   85 (96)
Q Consensus         8 ~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~   85 (96)
                      +....+..|+.+.+.|.+.|.|.|.+.|++++......  ..++...        ...++.|.+++..|+|.|.|.+.|.
T Consensus       392 ~~~~~v~~G~~v~l~C~~~g~P~p~i~W~~~~~~~~~~~~~~~~~~~--------~~~~L~i~~v~~~d~G~Y~C~a~N~  463 (477)
T 2id5_A          392 AQQVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVF--------PDGTLEVRYAQVQDNGTYLCIAANA  463 (477)
T ss_dssp             CEEEEEETTCCEEECCCEEEESCCEEEEECTTSCBC-------CEEC--------TTSCEEESSCCSTTCEEEEEEEEET
T ss_pred             cccEEEeCCCeEEEEEeccccCCCEEEEEECCccccccCCCceEEeC--------CCCEEEEeeCChHHCEEEEEEEEeC
Confidence            35567889999999999999999999999987554321  1122111        1145899999999999999999999


Q ss_pred             CCceEEEEEe
Q psy4613          86 LGEVESSIRL   95 (96)
Q Consensus        86 ~g~~~~~~~l   95 (96)
                      .|.....+.|
T Consensus       464 ~g~~~~~~~l  473 (477)
T 2id5_A          464 GGNDSMPAHL  473 (477)
T ss_dssp             TEEEEEEEEE
T ss_pred             CCcEEEEEEE
Confidence            9987766654

>1mqk_L Antibody 7E2 FV fragment, light chain; membrane protein, cytochrome C oxidase, high- resolution structure, immune system; 1.28A {Mus musculus} SCOP: b.1.1.1 PDB: 1ar1_D 3ehb_D* 3hb3_D* 1qle_L* 1f6l_L 3iy2_A 1vfa_A 1dvf_A 1kir_A 1g7i_A 1g7j_A 1a2y_A 1kip_A 1kiq_A 1vfb_A 1g7h_A 1a7o_L 1g7l_A 1g7m_A 1a7n_L ...

Probab=99.37  E-value=1.6e-11  Score=58.04  Aligned_cols=77  Identities=19%  Similarity=0.344  Sum_probs=55.1

Q ss_pred             EEecCceeeecCCCcEEEEEEeeecccceeEEeecc--c--ee-Eec--------ccceEEEEeccccceEEEEEEEccC
Q psy4613           4 IHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQ--G--DM-VIS--------SERYEVESISRSIFDFKMRLTIKKI   70 (96)
Q Consensus         4 ~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~--~--~~-~~~--------~~~~~~~~~~~~~~~~~~~l~i~~~   70 (96)
                      +..++..+.+..|++++|.|.+.+.+.+.+.|++..  .  .. ...        ..++.....     .....|.|.++
T Consensus         4 v~q~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~g~~~~~li~~~~~~~~~~~~R~~~~~~-----~~~~~L~I~~v   78 (120)
T 1mqk_L            4 LTQTPVSLSASVGETVTITCRASENIYSYLAWYQQKQGKSPQFLVYNAKTLGEGVPSRFSGSGS-----GTQFSLKINSL   78 (120)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEE-----TTEEEEEESSC
T ss_pred             eEecCCeEEEcCCCcEEEEEEeCCCCCceEEEEEECCCCCCEEEEEeCCcCCCCCCceEEEecc-----CCEEEEEECCC
Confidence            455667788999999999999988777889999853  1  11 111        123332210     02357999999


Q ss_pred             CCCCCeeEEEEEecC
Q psy4613          71 TKYDLGSYKCIAKNS   85 (96)
Q Consensus        71 ~~~d~g~y~c~~~~~   85 (96)
                      +..|+|.|.|.+.+.
T Consensus        79 ~~~DsG~Y~C~~~~~   93 (120)
T 1mqk_L           79 LPEDFGSYYCQHHYG   93 (120)
T ss_dssp             CGGGCEEEEEEECSS
T ss_pred             CHHHCEEEEEEEEeC
Confidence            999999999999875

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}

Probab=99.37  E-value=1.2e-11  Score=62.35  Aligned_cols=76  Identities=17%  Similarity=0.290  Sum_probs=57.3

Q ss_pred             CeEEecCceeeecCCCcEEEEEEeeecccc-eeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEE
Q psy4613           2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKS-INYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKC   80 (96)
Q Consensus         2 p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c   80 (96)
                      |.+...+....+..|..+.|.|.+.+.|.+ .+.|++++..+.... ..          .....|.|.++.  |.|.|.|
T Consensus       107 p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~~-~~----------~~~~~L~i~~~~--d~G~Y~C  173 (195)
T 2c5d_C          107 PYFLEEPEDRTVAANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAP-GH----------GPQRSLHVPGLN--KTSSFSC  173 (195)
T ss_dssp             CEEEECCCCEEECTTCCEEEEEEEECSSCCCEEEEEESSCBSSSST-TS----------SCCEEEEECCCS--SCEEEEE
T ss_pred             CeEEcCCCcEEEcCCCEEEEEeECCCCCCCCEEEEEECCEeccCCC-Cc----------CCCCeEEEcccc--cCceEEE
Confidence            445555555678889999999999999999 999999876553221 11          023678888887  7899999


Q ss_pred             EEecCCCceE
Q psy4613          81 IAKNSLGEVE   90 (96)
Q Consensus        81 ~~~~~~g~~~   90 (96)
                      .+.|..|...
T Consensus       174 ~a~N~~g~~~  183 (195)
T 2c5d_C          174 EAHNAKGVTT  183 (195)
T ss_dssp             EEEETTEEEE
T ss_pred             EEEcCCCceE
Confidence            9999988664

>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*

Probab=99.36  E-value=1.8e-11  Score=62.53  Aligned_cols=80  Identities=19%  Similarity=0.292  Sum_probs=58.2

Q ss_pred             CeEEecCceeeecCCCcEEEEEEeeecccceeEEeecc--cee--Ee---------cccceEEEEeccccceEEEEEEEc
Q psy4613           2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQ--GDM--VI---------SSERYEVESISRSIFDFKMRLTIK   68 (96)
Q Consensus         2 p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~--~~~--~~---------~~~~~~~~~~~~~~~~~~~~l~i~   68 (96)
                      |.+..++ .+.+..|+.+.|.|.+.+.+.+.+.|++..  ...  ..         ...++.....     .....|.|.
T Consensus         2 ~~v~~~~-~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-----~~~~~L~I~   75 (213)
T 3mj8_L            2 YTLTQPP-LVSVALGQKATITCSGDKLSDVYVHWYQQKAGQAPVLVIYEDNRRPSGIPDHFSGSNS-----GNMATLTIS   75 (213)
T ss_dssp             CCBBCCS-EEEEETTSCEEEEEECSSTTTSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEE-----TTEEEEEES
T ss_pred             eeEEeCC-cEEEeCCCCEEEEEEcCCCCCceEEEEEECCCCCcEEEEEECCccCCCccCcEEEEec-----CCEEEEEEC
Confidence            4555666 788999999999999998889999999831  111  10         1123332221     134679999


Q ss_pred             cCCCCCCeeEEEEEecCCC
Q psy4613          69 KITKYDLGSYKCIAKNSLG   87 (96)
Q Consensus        69 ~~~~~d~g~y~c~~~~~~g   87 (96)
                      +++..|.|.|.|.+.+..+
T Consensus        76 ~v~~~D~G~Y~C~~~~~~~   94 (213)
T 3mj8_L           76 KAQAGDEADYYCQSWDGTN   94 (213)
T ss_dssp             SCCGGGCEEEEEEEEETTT
T ss_pred             CCChhhCEEEEEEeccCCc
Confidence            9999999999999998876

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}

Probab=99.36  E-value=1.9e-11  Score=68.47  Aligned_cols=81  Identities=15%  Similarity=0.251  Sum_probs=57.4

Q ss_pred             CceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCC
Q psy4613           8 NQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLG   87 (96)
Q Consensus         8 ~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g   87 (96)
                      +..+.+..|+.+.|.|.+.+.|.+.+.|++++..+.. ........      .....|.|.+++..|.|.|.|.+.|..|
T Consensus        55 ~~~v~V~~G~~v~L~C~v~g~P~p~i~W~~~~~~l~~-~~~~~~~~------~~~~sL~I~~v~~~D~G~Y~C~a~N~~g  127 (423)
T 3qs7_E           55 AAAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNC-QPHFDLQN------RGVVSMVILKMTETQAGEYLLFIQSEAT  127 (423)
T ss_dssp             -CEEEECSSCCEEEEEECSCCSSCEEEEEETTEEECC-CCBC-----------CEEEEEESSCCSSSCSEEEEEEEC--C
T ss_pred             cccEEEecCCcEEEEEEEEcCCCCeEEEEECCCccCc-cceecccc------ceEEEEEEeecCcccCEEEEEEEEcCCC
Confidence            3467899999999999999999999999988654431 11111000      0124689999999999999999999988


Q ss_pred             ceEEEEEe
Q psy4613          88 EVESSIRL   95 (96)
Q Consensus        88 ~~~~~~~l   95 (96)
                      .....+.|
T Consensus       128 ~~~~~~~l  135 (423)
T 3qs7_E          128 NYTILFTV  135 (423)
T ss_dssp             EEEEEEEE
T ss_pred             cEEEEEEE
Confidence            77655544

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A

Probab=99.36  E-value=2.2e-11  Score=67.00  Aligned_cols=87  Identities=21%  Similarity=0.284  Sum_probs=63.1

Q ss_pred             eEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecc-cceEEEEeccccceEEEEEEEccCCCCCCeeEEEE
Q psy4613           3 VIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISS-ERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCI   81 (96)
Q Consensus         3 ~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~   81 (96)
                      .+..+.....+..|+.+.|.|.+.+.|.+.+.|++++..+.... .++......     ....|.|.++...|.|.|.|.
T Consensus       102 ~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~i~W~~~g~~l~~~~~~~~~~~~~~-----~~~~L~i~~~~~~d~G~Y~C~  176 (389)
T 2jll_A          102 KFISNQTIYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTG-----RKMILEIAPTSDNDFGRYNCT  176 (389)
T ss_dssp             EECCSCCEEEECTTCCEEEEECEEEESCCEEEEEETTEESSCTTCTTEEEEECS-----SCEEEEECCCSTTSSEEEEEE
T ss_pred             EEecCcceEEeccCCEEEEEEEEEecCCCeEEEEECCccCCcccCceEEEeccC-----CEEEEEECCCChhhCEEEEEE
Confidence            33334444467889999999999999999999999876553221 233322211     236799999999999999999


Q ss_pred             EecCCCceEEEEE
Q psy4613          82 AKNSLGEVESSIR   94 (96)
Q Consensus        82 ~~~~~g~~~~~~~   94 (96)
                      +.|..|.....+.
T Consensus       177 a~N~~G~~~~~~~  189 (389)
T 2jll_A          177 ATNHIGTRFQEYI  189 (389)
T ss_dssp             EEETTEEEEEEEE
T ss_pred             EEcCCCcEEEEEE
Confidence            9999987665543

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*

Probab=99.35  E-value=1.7e-12  Score=66.44  Aligned_cols=77  Identities=29%  Similarity=0.402  Sum_probs=57.3

Q ss_pred             CceeeecCCCcEEEEEEe-eecccceeEEeeccceeEe-------cccceEEEEeccccceEEEEEEEccCCCCCCeeEE
Q psy4613           8 NQLVGAPIDTDVTLECYV-EAYPKSINYWVRDQGDMVI-------SSERYEVESISRSIFDFKMRLTIKKITKYDLGSYK   79 (96)
Q Consensus         8 ~~~~~~~~g~~~~l~c~~-~~~~~~~~~w~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~   79 (96)
                      +....+..|..+.|.|.+ .+.|.+.+.|++++..+..       ...+....        ....|.|.++...|.|.|.
T Consensus       115 ~~~~~~~~g~~v~l~C~~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~--------~~~~L~i~~~~~~d~G~Y~  186 (217)
T 2vr9_A          115 PKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIV--------DGGNLLISNVEPIDEGNYK  186 (217)
T ss_dssp             CCCEEECTTSCEEECCBCCCEESCCEEEEEETTEEECCCCCC---CCCSEEEE--------TTTEEEESSCCSTTCEEEE
T ss_pred             CCccEEcCCCeEEEEEECCCCCCCCeEEEEECCcCCCcccccccccCCcEEec--------CCCcEEEeeCCHHHCeEEE
Confidence            344567889999999998 8889999999998655431       11122111        1246999999999999999


Q ss_pred             EEEecCCCceEEE
Q psy4613          80 CIAKNSLGEVESS   92 (96)
Q Consensus        80 c~~~~~~g~~~~~   92 (96)
                      |.+.|..|.....
T Consensus       187 C~a~N~~G~~~~~  199 (217)
T 2vr9_A          187 CIAQNLVGTRESS  199 (217)
T ss_dssp             EEEEETTEEEECC
T ss_pred             EEEEcccceeccc
Confidence            9999999876544

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}

Probab=99.35  E-value=7.1e-12  Score=62.78  Aligned_cols=80  Identities=19%  Similarity=0.292  Sum_probs=57.8

Q ss_pred             CCeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEe-cccceEEEEeccccceEEEEEEEccCCCCCCeeEE
Q psy4613           1 HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVI-SSERYEVESISRSIFDFKMRLTIKKITKYDLGSYK   79 (96)
Q Consensus         1 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~   79 (96)
                      +|.+...+....+..|+.+.|.|.+.+.+.+.+.|++++..+.. ...++....        ...|.|.+++..|.|.|.
T Consensus         2 ~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~--------~~~L~i~~~~~~d~G~Y~   73 (189)
T 2v5t_A            2 MLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLA--------NNNLQILNINKSDEGIYR   73 (189)
T ss_dssp             CCEEEECCSSEEEETTSCEEECCEEECSSCCEEEEEC-----CBCCCTTEEECT--------TSCEEETTCCGGGCEEEE
T ss_pred             CceeeccCCCEEEeCCCcEEEEEEEcCCCCCEEEEEECCccceeccCCeEEEec--------CCCEEEeeCCHhHCcEEE
Confidence            46677777778899999999999999988899999998655432 122332211        235899999999999999


Q ss_pred             EEEecCCCc
Q psy4613          80 CIAKNSLGE   88 (96)
Q Consensus        80 c~~~~~~g~   88 (96)
                      |.+.+..+.
T Consensus        74 C~~~~~~~~   82 (189)
T 2v5t_A           74 CEGRVEARG   82 (189)
T ss_dssp             EEEEETTTT
T ss_pred             EEEEEcCCC
Confidence            999987654

>1i3g_L Antibody FV fragment; antibiotic; 2.44A {Mus musculus} SCOP: b.1.1.1 PDB: 3iy6_A

Probab=99.35  E-value=5.6e-11  Score=55.39  Aligned_cols=78  Identities=18%  Similarity=0.381  Sum_probs=55.4

Q ss_pred             eEEecCceeeecCCCcEEEEEEeeecccceeEEeeccc----eeEe-c--------ccceEEEEeccccceEEEEEEEcc
Q psy4613           3 VIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQG----DMVI-S--------SERYEVESISRSIFDFKMRLTIKK   69 (96)
Q Consensus         3 ~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~----~~~~-~--------~~~~~~~~~~~~~~~~~~~l~i~~   69 (96)
                      .+..++..+.+..|++++|.|.+.+.+.+.+.|++...    ..+. .        ..++.....     .....|.|.+
T Consensus         6 ~v~q~p~~~~~~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~R~~~~~~-----~~~~~L~I~~   80 (111)
T 1i3g_L            6 VLTQSHKFMSTSVGDRVSITCKASQDVGTAVAWYQQKPGQSPKLLIYWASTRHTGVPDRFTGSGS-----GTDFTLTISN   80 (111)
T ss_dssp             CEEESCSEEECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEE-----TTEEEEEESS
T ss_pred             eEEEeCCEEEEcCCCCEEEEEEeCCCCCCCEEEEEECCCCCCEEEEEECCccCCCCCCcEEEEcC-----CCEEEEEECC
Confidence            45566777889999999999999877777899998632    1111 1        123332210     0235799999


Q ss_pred             CCCCCCeeEEEEEecC
Q psy4613          70 ITKYDLGSYKCIAKNS   85 (96)
Q Consensus        70 ~~~~d~g~y~c~~~~~   85 (96)
                      ++..|+|.|.|.+.+.
T Consensus        81 v~~~DsG~Y~C~~~~~   96 (111)
T 1i3g_L           81 VQSEDLADYFCQQYSS   96 (111)
T ss_dssp             CCGGGCSEEEEEECSS
T ss_pred             CCHHHCEEEEEEEecC
Confidence            9999999999999875

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*

Probab=99.35  E-value=5.4e-12  Score=69.64  Aligned_cols=77  Identities=29%  Similarity=0.425  Sum_probs=57.4

Q ss_pred             ceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCc
Q psy4613           9 QLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGE   88 (96)
Q Consensus         9 ~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~   88 (96)
                      ....+..|+.+.|.|.+.+.|.|.+.|++.+.......  .....       ....|.|.+++..|.|.|.|.+.|..|.
T Consensus       213 ~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~~~~~~~~~--~~~~~-------~~~~L~I~~v~~~D~G~Y~C~a~N~~G~  283 (384)
T 3kld_A          213 ETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARK--ARRHK-------SNGILEIPNFQQEDAGSYECVAENSRGK  283 (384)
T ss_dssp             SEEEEETTSCEEEEEEEEEESCCEEEEEETTCCCCCTT--CEECT-------TSCEEEECSCCGGGCEEEEEEEEETTEE
T ss_pred             CceEecCCCcEEEEEEEeecCCCcEEEEeCCCcccccc--ceecC-------CCcEEEECCCChhhCEEEEEEEEcCCCe
Confidence            34567889999999999999999999998654332111  11111       1256999999999999999999999987


Q ss_pred             eEEEEE
Q psy4613          89 VESSIR   94 (96)
Q Consensus        89 ~~~~~~   94 (96)
                      ......
T Consensus       284 ~~~~~~  289 (384)
T 3kld_A          284 NVAKGQ  289 (384)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            655443

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}

Probab=99.35  E-value=2.2e-12  Score=65.31  Aligned_cols=78  Identities=17%  Similarity=0.202  Sum_probs=56.6

Q ss_pred             CCeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEE
Q psy4613           1 HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKC   80 (96)
Q Consensus         1 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c   80 (96)
                      +|.+...+.. .+..|+.+.|.|.+.+ +.+.+.|++++..+...  .  ..   .........|.|.+++..|.|.|.|
T Consensus         5 ~P~i~~~p~~-~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~--~--~~---~~~~~~~~~L~i~~v~~~D~G~Y~C   75 (196)
T 3p2t_A            5 KPTLWAEPGS-VISWGNSVTIWCQGTL-EAREYRLDKEESPAPWD--R--QN---PLEPKNKARFSIPSMTEDYAGRYRC   75 (196)
T ss_dssp             CCEEEEESCS-EEETTCCEEEEEECCT-TCCEEEEEETTSCSCSE--E--EC---CCSSSSEEEEEESSCCGGGCEEEEE
T ss_pred             CCEEEccCCC-cCCCCCcEEEEeeCCC-CCCEEEEEECCCCCccc--c--cc---cccCCceEEEEeccCCcccCceEEE
Confidence            4666666655 6889999999999888 67789999987554211  0  00   0000134779999999999999999


Q ss_pred             EEecCCC
Q psy4613          81 IAKNSLG   87 (96)
Q Consensus        81 ~~~~~~g   87 (96)
                      .+.|..|
T Consensus        76 ~a~n~~g   82 (196)
T 3p2t_A           76 YYRSPVG   82 (196)
T ss_dssp             EEEETTE
T ss_pred             EEeCCCc
Confidence            9998776

>2coq_A NEW antigen receptor variable domain; IG VNAR, natural TYPE2, immune system; 2.10A {Orectolobus maculatus}

Probab=99.35  E-value=5.3e-11  Score=55.21  Aligned_cols=79  Identities=20%  Similarity=0.344  Sum_probs=55.0

Q ss_pred             eEEecCceeeecCCCcEEEEEEeeecc--cceeEEeecc--ce---eEecccceEEEEeccccceEEEEEEEccCCCCCC
Q psy4613           3 VIHVPNQLVGAPIDTDVTLECYVEAYP--KSINYWVRDQ--GD---MVISSERYEVESISRSIFDFKMRLTIKKITKYDL   75 (96)
Q Consensus         3 ~~~~~~~~~~~~~g~~~~l~c~~~~~~--~~~~~w~~~~--~~---~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~   75 (96)
                      .+...+..+.+..|+++.|.|.+.+..  .+.+.|++..  ..   +.....++........   ....|.|.+++..|+
T Consensus         2 ~v~q~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~r~~~~~~~~~---~~~~L~I~~~~~~Ds   78 (108)
T 2coq_A            2 RVDQTPRIATKETGESLTINCVLRDTACALDSTNWYRTKLGSTKEQTISIGGRYSETVDEGS---NSASLTIRDLRVEDS   78 (108)
T ss_dssp             CEEEECSEEEECTTCCEEEEEEECCSSEEEEEEEEEEEETTCCCEEECCCBTTEEEEEETTT---TEEEEEECSCCGGGC
T ss_pred             ceEeCCceEEEcCCCCEEEEeEeCCCcCCCCEEEEEEcCCCCCcEEEEEeCCceEEEEcCCC---CEEEEEECCCCcccC
Confidence            355667778899999999999987653  5689999863  11   1112344443221111   246799999999999


Q ss_pred             eeEEEEEec
Q psy4613          76 GSYKCIAKN   84 (96)
Q Consensus        76 g~y~c~~~~   84 (96)
                      |.|.|.+.+
T Consensus        79 G~Y~C~~~~   87 (108)
T 2coq_A           79 GTYKCKAYR   87 (108)
T ss_dssp             EEEEEEEEE
T ss_pred             EEEEEEEEe
Confidence            999999987

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}

Probab=99.35  E-value=1.8e-10  Score=62.43  Aligned_cols=88  Identities=13%  Similarity=0.142  Sum_probs=63.0

Q ss_pred             cCceeeecCCCcEEEEEEeeecc---cc-eeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCe-eEEEE
Q psy4613           7 PNQLVGAPIDTDVTLECYVEAYP---KS-INYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLG-SYKCI   81 (96)
Q Consensus         7 ~~~~~~~~~g~~~~l~c~~~~~~---~~-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g-~y~c~   81 (96)
                      .+....+..|+.+.|.|.+.+.|   .+ .+.|++++..+................ .....|.|.++...|.| .|.|.
T Consensus       234 ~~~~~~v~~G~~~~l~C~~~g~p~~~~~i~v~W~~~g~~i~~~~~~~~~~~~~~~~-~~~~~L~I~~v~~~D~G~~Y~C~  312 (329)
T 3oq3_B          234 LDPKINVTIGEPANITCTAVSTSLLVDDVLIDWENPSGWIIGLDFGVYSILTSSGG-ITEATLYFENVTEEYIGNTYTCR  312 (329)
T ss_dssp             CCSEEEECTTSCEEEEEEEEETTCCTTCCEEEEECTTSCBCCBCSSEEEEEEEETT-EEEEEEEESSCCGGGTTCEEEEE
T ss_pred             cCCeeEEecCCCEEEEEEEEECCCCCCCcEEEEEECCeeeeccCCceeeeecccCc-eeEeEEEEEeccHHHCCCcEEEE
Confidence            34456788999999999999987   67 789999876543222222111101111 14578999999999999 99999


Q ss_pred             EecCCCceEEEEEe
Q psy4613          82 AKNSLGEVESSIRL   95 (96)
Q Consensus        82 ~~~~~g~~~~~~~l   95 (96)
                      +.|..|.....+.|
T Consensus       313 a~N~~G~~~~~~~l  326 (329)
T 3oq3_B          313 GHNYYFDKTLTTTV  326 (329)
T ss_dssp             EECSSCEEEEEEEE
T ss_pred             EEecCCceEEEEEE
Confidence            99999988777655

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}

Probab=99.34  E-value=4.7e-12  Score=65.68  Aligned_cols=79  Identities=16%  Similarity=0.445  Sum_probs=58.4

Q ss_pred             ceeeecCCCcEEEEEEeeecccceeEEeeccceeEeccc--ceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCC
Q psy4613           9 QLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSE--RYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSL   86 (96)
Q Consensus         9 ~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~   86 (96)
                      ..+.+..|+.+.|.|.+.+.+.+.+.|++++..+.....  ......       ....|.|.+++..|.|.|.|.+.+..
T Consensus        23 ~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~-------~~~~L~i~~v~~~d~G~Y~C~~~~~~   95 (241)
T 3grw_A           23 KLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRH-------QQWSLVMESVVPSDRGNYTCVVENKF   95 (241)
T ss_dssp             CEEEEETTSEEEEECCEECSSCCEEEEEETTEECCGGGSTTCCEEEG-------GGTEEEECSCCGGGCEEEEEEEEETT
T ss_pred             cceEEcCCCeEEEEEEecCCCCceeEEEECCcccCCCCcccceeeec-------cceEEEEEeCCcccCEEEEEEEeecC
Confidence            457788999999999999988999999998765532111  111111       12468999999999999999999987


Q ss_pred             CceEEEEE
Q psy4613          87 GEVESSIR   94 (96)
Q Consensus        87 g~~~~~~~   94 (96)
                      +.....+.
T Consensus        96 ~~~~~~~~  103 (241)
T 3grw_A           96 GSIRQTYT  103 (241)
T ss_dssp             EEEEEEEE
T ss_pred             CceEEEEE
Confidence            76655443

>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*

Probab=99.34  E-value=1.8e-11  Score=62.61  Aligned_cols=81  Identities=21%  Similarity=0.201  Sum_probs=56.1

Q ss_pred             eeeecCCCcEEEEEE---eeecccceeEEeeccceeEe-----cc-----------cceEEEEeccccceEEEEEEEccC
Q psy4613          10 LVGAPIDTDVTLECY---VEAYPKSINYWVRDQGDMVI-----SS-----------ERYEVESISRSIFDFKMRLTIKKI   70 (96)
Q Consensus        10 ~~~~~~g~~~~l~c~---~~~~~~~~~~w~~~~~~~~~-----~~-----------~~~~~~~~~~~~~~~~~~l~i~~~   70 (96)
                      .+.+..|+.+.|.|.   ..+.|.+.+.|++.+.....     ..           .++.....     .....|.|.++
T Consensus         2 ~Vta~~Ge~v~L~C~~~~v~~~p~~~V~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~L~I~~v   76 (203)
T 4fa8_A            2 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRS-----ANTFFLVVTAA   76 (203)
T ss_dssp             CCEEETTCCEEEEEECSSTTCSTTSEEEEEEEETTTEEEEEEEEETTEEEECGGGBTTEEEEEE-----TTEEEEEESSC
T ss_pred             CeEEEcCCCEEEEeeeeccCCCCCcEEEEEEcCCCcceEEEEecCCceEEeeccccceEEEEEc-----CCEEEEEEccC
Confidence            456889999999995   45678899999987532210     00           01111110     02367999999


Q ss_pred             CCCCCeeEEEEEecCCCceEEEEEe
Q psy4613          71 TKYDLGSYKCIAKNSLGEVESSIRL   95 (96)
Q Consensus        71 ~~~d~g~y~c~~~~~~g~~~~~~~l   95 (96)
                      +..|.|.|.|.+.|..|.......|
T Consensus        77 ~~~D~G~Y~C~a~n~~g~~~~~~~l  101 (203)
T 4fa8_A           77 NISHDGNYLCRMKLGETEVTKQEHL  101 (203)
T ss_dssp             CGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred             CHHHCeEEEEEEEcCCCcEEEEEEE
Confidence            9999999999999988877665543

>1qfw_M FV, antibody (anti beta subunit) (light chain); glycoprotein hormone; HET: NAG; 3.50A {Mus musculus} SCOP: b.1.1.1

Probab=99.34  E-value=1.2e-11  Score=57.42  Aligned_cols=77  Identities=18%  Similarity=0.369  Sum_probs=54.3

Q ss_pred             EEecCceeeecCCCcEEEEEEeeecccceeEEeeccc----eeEe-c--------ccceEEEEeccccceEEEEEEEccC
Q psy4613           4 IHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQG----DMVI-S--------SERYEVESISRSIFDFKMRLTIKKI   70 (96)
Q Consensus         4 ~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~----~~~~-~--------~~~~~~~~~~~~~~~~~~~l~i~~~   70 (96)
                      +..++..+.+..|+++.|.|.+.+.+.+.+.|++...    ..+. .        ..++....     ......|.|.++
T Consensus         4 v~q~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~-----~~~~~~L~I~~v   78 (108)
T 1qfw_M            4 LTQSPKSMSMSVGERVTLSCKASETVDSFVSWYQQKPEQSPKLLIFGASNRFSGVPDRFTGSG-----SATDFTLTISSV   78 (108)
T ss_dssp             EEEECSCEECCTTCCEEEEEEESSCCCSCEEEEEECTTSCCEEEECSSSCBCTTCCTTEECCB-----CSSEEEEEESSC
T ss_pred             EEEeCCeEEEcCCCCEEEEeeeCCCCCcEEEEEEECCCCCCEEEEEEcCccCCCCCCcEEEEc-----CCCEEEEEECCC
Confidence            4556667789999999999999877777899998531    1111 0        11222110     112467999999


Q ss_pred             CCCCCeeEEEEEecC
Q psy4613          71 TKYDLGSYKCIAKNS   85 (96)
Q Consensus        71 ~~~d~g~y~c~~~~~   85 (96)
                      +..|+|.|.|.+.+.
T Consensus        79 ~~~DsG~Y~C~~~~~   93 (108)
T 1qfw_M           79 QAEDFADYHCGQTYN   93 (108)
T ss_dssp             CTTCCSEEEEEECSS
T ss_pred             ChhhCEEEEEEEccC
Confidence            999999999999875

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.34  E-value=8.8e-12  Score=68.54  Aligned_cols=78  Identities=23%  Similarity=0.322  Sum_probs=59.8

Q ss_pred             CceeeecCCCcEEEEEEeeecccceeEEeeccceeEec---ccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEec
Q psy4613           8 NQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVIS---SERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKN   84 (96)
Q Consensus         8 ~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~   84 (96)
                      +..+.+..|+.+.+.|.+.+ |.|.+.|++.+......   ..++.. .        ..+|.|.+++..|+|.|.|.+.|
T Consensus       253 ~~~v~v~~G~~~~l~C~~~g-p~p~i~W~~~~~~~~~~~~~~~r~~~-~--------~~~L~I~~v~~~D~G~Y~C~a~N  322 (361)
T 2xot_A          253 ESAWEAHLGDTLTIRCDTKQ-QGMTKVWVSPSNEQVLSQGSNGSVSV-R--------NGDLFFKKVQVEDGGVYTCYAMG  322 (361)
T ss_dssp             CCCCEEETTCCEEECCCCSS-TTCEEEEECTTSCBCCSCCSSSSEEE-E--------TTEEEESSCCTTSCEEEEEEEEC
T ss_pred             ccCceecCCCeEEEEeEeeC-CCCeEEEEeCCCeeEeecccCCceEe-e--------cCeEEEeecCcccCEEEEEEEec
Confidence            34567889999999999998 88999999976554321   123333 1        24699999999999999999999


Q ss_pred             CCCceEEEEEe
Q psy4613          85 SLGEVESSIRL   95 (96)
Q Consensus        85 ~~g~~~~~~~l   95 (96)
                      ..|.....+.|
T Consensus       323 ~~g~~~~~~~l  333 (361)
T 2xot_A          323 ETFNETLSVEL  333 (361)
T ss_dssp             SSCEEEEEEEE
T ss_pred             CCCccEEEEEE
Confidence            98887766554

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*

Probab=99.34  E-value=1e-11  Score=63.09  Aligned_cols=69  Identities=22%  Similarity=0.328  Sum_probs=53.4

Q ss_pred             ecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCceE
Q psy4613          13 APIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVE   90 (96)
Q Consensus        13 ~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~~   90 (96)
                      +..|..+.|.|.+.+.+ +.+.|++++..+. ...++....       ....|.|.++...|.|.|.|.+.|..|...
T Consensus       122 ~~~g~~v~l~C~~~~~p-p~i~W~~~g~~l~-~~~~~~~~~-------~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~  190 (208)
T 3r4d_A          122 VKELDSVTLTCLSNDIG-ANIQWLFNSQSLQ-LTERMTLSQ-------NNSILRIDPIKREDAGEYQCEISNPVSVRR  190 (208)
T ss_dssp             CCTTCCEEEEEECSCTT-CEEEEEETTEECC-CCSSEEEET-------TTTEEEESSCCGGGCEEEEEEEECTTCCEE
T ss_pred             EeeCCCEEEEEECCCCC-CceEEEECCEeCC-CCCCeEEcC-------CCCEEEEeccCHHhCeEEEEEEecCCCccc
Confidence            67899999999998865 7999999865543 333443322       125699999999999999999999988754

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.33  E-value=2.2e-11  Score=66.54  Aligned_cols=82  Identities=17%  Similarity=0.152  Sum_probs=60.1

Q ss_pred             ecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEec--cccceEEEEEEEccCCCCCCeeEEEEEecCCCceE
Q psy4613          13 APIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESIS--RSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVE   90 (96)
Q Consensus        13 ~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~~   90 (96)
                      ...|..+.|.|.+.+.|.|.+.|++++..+. ...........  .........|.|.+++..|.|.|.|.+.|..|...
T Consensus       258 ~~~g~~v~l~C~~~g~P~p~i~W~~~g~~l~-~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~G~~~  336 (347)
T 2ifg_A          258 AVEMHHWCIPFSVDGQPAPSLRWLFNGSVLN-ETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQAS  336 (347)
T ss_dssp             CEESSSEEEEEEEEEESCCEEEEEETTEECC-CCSSEEEEECCCCTTCCCEEEEEEESSCCGGGCEEEEEEEEETTEEEE
T ss_pred             CccCceEEEEEEeeecCCCcEEEEeCCEECC-CCcceeeEEEeecCCCcccceEEEECCCCcccCceEEEEEecCCCcee
Confidence            4568999999999999999999999875543 22222211111  01111357799999999999999999999999888


Q ss_pred             EEEEe
Q psy4613          91 SSIRL   95 (96)
Q Consensus        91 ~~~~l   95 (96)
                      ..+.|
T Consensus       337 ~~~~l  341 (347)
T 2ifg_A          337 ASIMA  341 (347)
T ss_dssp             EEEEE
T ss_pred             eEEEE
Confidence            77765

>4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus}

Probab=99.33  E-value=6.2e-11  Score=60.83  Aligned_cols=81  Identities=15%  Similarity=0.263  Sum_probs=53.9

Q ss_pred             eecCCCcEEEEEEe-eecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCceE
Q psy4613          12 GAPIDTDVTLECYV-EAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVE   90 (96)
Q Consensus        12 ~~~~g~~~~l~c~~-~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~~   90 (96)
                      .+..|..+.|.|.+ .+.|.+.+.|++++................   ......+.|.++...|.|.|.|.+.|..|...
T Consensus       121 ~v~~G~~~~l~C~~~~g~P~~~v~W~~~~~~~~~~~~~~~~~~~~---~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~  197 (222)
T 4i0k_A          121 DLRPGNMVTITCSSYQGYPEAEVFWKDGQGVPLTGNVTTSQMANE---RGLFDVHSVLRVVLGANGTYSCLVRNPVLQQD  197 (222)
T ss_dssp             ---CCSEEEEEEEEEEEBSCCEEEEECTTSCBCCSEEEEEEEECT---TSCEEEEEEEEEECCTTCEEEEEEEETTTTEE
T ss_pred             eecCCceEEEEEecccccCCCeEEEEcCCCccCCCCcceeEEcCC---CCeEEEEEEEEEEeCCCCEEEEEEECCCCCCc
Confidence            45679999999999 788889999998544332111111111111   11224577888899999999999999999877


Q ss_pred             EEEEe
Q psy4613          91 SSIRL   95 (96)
Q Consensus        91 ~~~~l   95 (96)
                      ..+.|
T Consensus       198 ~~~~l  202 (222)
T 4i0k_A          198 AHGSV  202 (222)
T ss_dssp             EEEEE
T ss_pred             eEEEE
Confidence            76654

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}

Probab=99.33  E-value=2e-12  Score=64.98  Aligned_cols=78  Identities=29%  Similarity=0.461  Sum_probs=59.0

Q ss_pred             eEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEE
Q psy4613           3 VIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIA   82 (96)
Q Consensus         3 ~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~   82 (96)
                      .+...+....+..|..+.|.|.+.+.|.+.+.|++++..+. ...++....        ...|.|.++...|.|.|.|.+
T Consensus       102 ~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~-~~~~~~~~~--------~~~L~i~~~~~~d~G~Y~C~a  172 (192)
T 2iep_A          102 KITRPPINVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALR-ENSRIAVLE--------SGSLRIHNVQKEDAGQYRCVA  172 (192)
T ss_dssp             EEEECCCCEEEETTSCEEECCEEEEESCCEEEEEETTEECC-CCSSEEECT--------TSCEEESSCCGGGCEEEEEEE
T ss_pred             ccccCCcceEEeCCCcEEEEEEEeccCCceEEEEeCCEEcc-CCCcEEEec--------CCcEEEecCChhhCEEEEEEE
Confidence            34444555678889999999999999999999999865543 223332211        136899999999999999999


Q ss_pred             ecCCCce
Q psy4613          83 KNSLGEV   89 (96)
Q Consensus        83 ~~~~g~~   89 (96)
                      .|..|..
T Consensus       173 ~n~~g~~  179 (192)
T 2iep_A          173 KNSLGTA  179 (192)
T ss_dssp             EETTEEE
T ss_pred             EcCCCcE
Confidence            9998865

>4ffy_L DENV1-E111 single chain variable fragment (light; viral envelope proteins, structural genomics, antibody epito flavivirus, niaid; 2.50A {Mus musculus}

Probab=99.33  E-value=3.2e-11  Score=57.45  Aligned_cols=80  Identities=19%  Similarity=0.372  Sum_probs=56.3

Q ss_pred             CeEEecCceeeecCCCcEEEEEEeeecc----cceeEEeeccc----eeEec---------ccceEEEEeccccceEEEE
Q psy4613           2 PVIHVPNQLVGAPIDTDVTLECYVEAYP----KSINYWVRDQG----DMVIS---------SERYEVESISRSIFDFKMR   64 (96)
Q Consensus         2 p~~~~~~~~~~~~~g~~~~l~c~~~~~~----~~~~~w~~~~~----~~~~~---------~~~~~~~~~~~~~~~~~~~   64 (96)
                      +.+..++..+.+..|++++|.|.+...+    .+.+.|++...    ..+..         ..++.....     .....
T Consensus         2 ~~v~q~p~~v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~-----~~~~s   76 (126)
T 4ffy_L            2 IVLTQSPASLAVSLGQRATISCRASESVDHYGNSFIYWYQQKPGQPPKLLIYLASNLESGVPARFSGSGS-----ETDFT   76 (126)
T ss_dssp             CCEEEECSEEEEETTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEE-----TTEEE
T ss_pred             CcEEeCCCeEEEeCCCCEEEEEecCCCcccCCCceEEEEEECCCCCCEEEEEEcCccCCCCCCcEEEecC-----CCEEE
Confidence            4566777788899999999999988765    56899998521    11111         123332210     12467


Q ss_pred             EEEccCCCCCCeeEEEEEecCC
Q psy4613          65 LTIKKITKYDLGSYKCIAKNSL   86 (96)
Q Consensus        65 l~i~~~~~~d~g~y~c~~~~~~   86 (96)
                      |.|.+++..|+|.|.|.+.+..
T Consensus        77 L~I~~v~~~DsG~Y~C~~~~~~   98 (126)
T 4ffy_L           77 LTIDSVETDDAATYYCQQNNED   98 (126)
T ss_dssp             EEESSCCGGGCEEEEEEECSSS
T ss_pred             EEECCCCHHHCEEEEEEEecCC
Confidence            9999999999999999998753

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A

Probab=99.33  E-value=8.7e-11  Score=60.59  Aligned_cols=88  Identities=20%  Similarity=0.228  Sum_probs=58.2

Q ss_pred             EEecCceeeecCCCcEEEEEEeeecccc---eeEEeeccceeEe---c-------------ccceEEEEeccccceEEEE
Q psy4613           4 IHVPNQLVGAPIDTDVTLECYVEAYPKS---INYWVRDQGDMVI---S-------------SERYEVESISRSIFDFKMR   64 (96)
Q Consensus         4 ~~~~~~~~~~~~g~~~~l~c~~~~~~~~---~~~w~~~~~~~~~---~-------------~~~~~~~~~~~~~~~~~~~   64 (96)
                      +..|...+.+..|+++.|.|.+.+.+.+   .+.|++++.....   .             ..+....  ..........
T Consensus         7 V~~P~~pV~v~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~--~~~~~~~~~~   84 (226)
T 4f80_A            7 VLGPSGPILAMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPYRGRTSIL--RDGITAGKAA   84 (226)
T ss_dssp             EECCSSCEEEETTSCEEEEEEEESCCCCTTSEEEEEETTTCCEEEEEETTEECGGGSCTTTTTTEEEE--CTTGGGTEEE
T ss_pred             EECCCCCEEEEcCCcEEEEEEEECCCCCCceEEEEEECCCCceEEEEeCCeEcccccCccccceEEEe--cccccCCeEE
Confidence            3345666888999999999998865544   6899987543210   0             0011111  1111112467


Q ss_pred             EEEccCCCCCCeeEEEEEecCCCceEEEE
Q psy4613          65 LTIKKITKYDLGSYKCIAKNSLGEVESSI   93 (96)
Q Consensus        65 l~i~~~~~~d~g~y~c~~~~~~g~~~~~~   93 (96)
                      |.|.+++..|.|.|.|.+.|..|......
T Consensus        85 L~I~~v~~~D~G~Y~C~a~n~~~~~~~~v  113 (226)
T 4f80_A           85 LRIHNVTASDSGKYLCYFQDGDFYEKALV  113 (226)
T ss_dssp             EEESSCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred             EEEeeCchHHCeeEEEEEECCCcEEEEEE
Confidence            99999999999999999999877655443

>1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system; 1.45A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E 3csp_A 1py9_A

Probab=99.33  E-value=1.9e-10  Score=55.45  Aligned_cols=90  Identities=21%  Similarity=0.285  Sum_probs=58.0

Q ss_pred             EEecCceeeecCCCcEEEEEEeeecc---cceeEEeeccce--eE-ec-------------ccceEEEEeccccceEEEE
Q psy4613           4 IHVPNQLVGAPIDTDVTLECYVEAYP---KSINYWVRDQGD--MV-IS-------------SERYEVESISRSIFDFKMR   64 (96)
Q Consensus         4 ~~~~~~~~~~~~g~~~~l~c~~~~~~---~~~~~w~~~~~~--~~-~~-------------~~~~~~~~~~~~~~~~~~~   64 (96)
                      +..++..+.+..|+++.|.|.+.+.+   .+.+.|++.+..  .. ..             ..+..+...  ........
T Consensus         9 V~~~~~~v~~~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~--~~~~~~~s   86 (139)
T 1pko_A            9 VIGPGHPIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKE--SIGEGKVA   86 (139)
T ss_dssp             EECCSSCEEEETTSCEEEEEEEESCCCCTTSEEEEEEC--CCEEEEEETTEECGGGSCSTTTTSEEEECT--TGGGTEEE
T ss_pred             EECCCCCEEEEeCCCEEEeeEccCCCCCCceEEEEEECCCCceEEEEeCCcccccccCcccCCceEEccc--cccCCeEE
Confidence            34456677899999999999987644   257999987531  11 00             112222110  00112467


Q ss_pred             EEEccCCCCCCeeEEEEEecCCCceEEEEEe
Q psy4613          65 LTIKKITKYDLGSYKCIAKNSLGEVESSIRL   95 (96)
Q Consensus        65 l~i~~~~~~d~g~y~c~~~~~~g~~~~~~~l   95 (96)
                      |.|.+++..|+|.|.|.+.+..+.....+.|
T Consensus        87 L~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~L  117 (139)
T 1pko_A           87 LRIQNVRFSDEGGYTCFFRDHSYQEEAAVEL  117 (139)
T ss_dssp             EEESSCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred             EEEccCCHHHCEEEEEEEEcCCCceEEEEEE
Confidence            9999999999999999999987755554443

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4

Probab=99.33  E-value=4.2e-11  Score=59.74  Aligned_cols=74  Identities=18%  Similarity=0.266  Sum_probs=56.3

Q ss_pred             CeEEecCceeeecCCCcEEEEEEeeecccc-eeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEE
Q psy4613           2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKS-INYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKC   80 (96)
Q Consensus         2 p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c   80 (96)
                      |.+...+....+..|..+.|.|.+.+.|.| .+.|++++..+...  . .          ....|.|.++  .|.|.|.|
T Consensus        99 p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~--~-~----------~~~~L~i~~~--~d~G~Y~C  163 (182)
T 1rhf_A           99 PFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGP--A-P----------SPSVLNVTGV--TQSTMFSC  163 (182)
T ss_dssp             CEEEECCCCEEECTTCCEEEEEEEECSSSCCEEEEEETTEECSCS--E-E----------SSEEEEECCC--SSCEEEEE
T ss_pred             CeEEecCcceEecCCCEEEEEeEecCCCCCCEEEEEcCCeECCCC--C-C----------CceEEEEecc--ccCeEEEE
Confidence            555555566678899999999999999999 99999986554211  1 0          1256888887  48899999


Q ss_pred             EEecCCCceE
Q psy4613          81 IAKNSLGEVE   90 (96)
Q Consensus        81 ~~~~~~g~~~   90 (96)
                      .+.|..|...
T Consensus       164 ~a~N~~g~~~  173 (182)
T 1rhf_A          164 EAHNLKGLAS  173 (182)
T ss_dssp             EEEETTEEEE
T ss_pred             EEECCCCCcc
Confidence            9999988664

>1j05_L T84.66 antibody, anti-CEA MAB T84.66, light chain; immunoglobulin, immune system; 1.50A {Mus musculus} SCOP: b.1.1.1 PDB: 1qfw_L* 1qnz_L 3iy3_A 3iy4_A

Probab=99.32  E-value=4.3e-11  Score=55.74  Aligned_cols=78  Identities=15%  Similarity=0.316  Sum_probs=54.2

Q ss_pred             eEEecCceeeecCCCcEEEEEEeeecc----cceeEEeecc--c--eeEec---------ccceEEEEeccccceEEEEE
Q psy4613           3 VIHVPNQLVGAPIDTDVTLECYVEAYP----KSINYWVRDQ--G--DMVIS---------SERYEVESISRSIFDFKMRL   65 (96)
Q Consensus         3 ~~~~~~~~~~~~~g~~~~l~c~~~~~~----~~~~~w~~~~--~--~~~~~---------~~~~~~~~~~~~~~~~~~~l   65 (96)
                      .+...+..+.+..|+++.|.|.+.+.+    .+.+.|++..  .  ..+..         ..++.....     .....|
T Consensus         3 ~v~q~p~~~~~~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~R~~~~~~-----~~~~~L   77 (111)
T 1j05_L            3 VLTQSPASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGS-----RTDFTL   77 (111)
T ss_dssp             CEEEECSEEECCTTSCEEEEEEESSCCEETTEECEEEEEECTTSCEEEEEETTTEECTTSCTTEEEEEE-----TTEEEE
T ss_pred             cEEEeCCEEEEeCCCCEEEEeecCCCcccCCCceEEEEEeCCCCCCEEEEEecCcCCCCCCCcEEEEcc-----CCEEEE
Confidence            345566778899999999999988765    5689999853  1  11111         123332210     023579


Q ss_pred             EEccCCCCCCeeEEEEEecC
Q psy4613          66 TIKKITKYDLGSYKCIAKNS   85 (96)
Q Consensus        66 ~i~~~~~~d~g~y~c~~~~~   85 (96)
                      .|.+++..|+|.|.|.+.+.
T Consensus        78 ~I~~v~~~DsG~Y~C~~~~~   97 (111)
T 1j05_L           78 IIDPVEADDVATYYCQQTNE   97 (111)
T ss_dssp             EESSCCGGGCEEEEEEECSS
T ss_pred             EECCCCcccCEEEEEEEecC
Confidence            99999999999999999875

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}

Probab=99.32  E-value=1.8e-10  Score=68.63  Aligned_cols=93  Identities=30%  Similarity=0.406  Sum_probs=65.9

Q ss_pred             CeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEE
Q psy4613           2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCI   81 (96)
Q Consensus         2 p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~   81 (96)
                      |.+........+..|+.+.|.|.+.+.|.+.+.|++++..+. ...++...............|.|..+...|.|.|.|.
T Consensus       430 p~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~v~W~~~g~~l~-~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~  508 (816)
T 3dmk_A          430 PVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIA-NNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCI  508 (816)
T ss_dssp             CEEEEECCCEEECSSSCEEEEEEEECSSCCEEEEEETTEECC-SCTTEEEEEEECTTSCEEEEEEESSCCTTTCEEEEEE
T ss_pred             CceEecCcceEEcCCCCEEEEEEEecCCCCEEEEEECCEECC-CCCCcccccEEecCCCcEEEEEEeeccccCCEEEEEE
Confidence            444444455667889999999999999999999999865543 3334433221111111346799999999999999999


Q ss_pred             EecCCCceEEEEEe
Q psy4613          82 AKNSLGEVESSIRL   95 (96)
Q Consensus        82 ~~~~~g~~~~~~~l   95 (96)
                      +.|..|.......|
T Consensus       509 a~n~~g~~~~~~~l  522 (816)
T 3dmk_A          509 AKSKVGVAEHSAKL  522 (816)
T ss_dssp             EEETTEEEEEEEEE
T ss_pred             EEECCCeEEEEEEE
Confidence            99998876655543

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A

Probab=99.32  E-value=3e-11  Score=61.63  Aligned_cols=79  Identities=19%  Similarity=0.268  Sum_probs=55.1

Q ss_pred             cCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCC
Q psy4613           7 PNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSL   86 (96)
Q Consensus         7 ~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~   86 (96)
                      +...+.+..|+.+.|.|.+.|.|.|.+.|.+......  ...... . .     ....|.|.+++..|.|.|.|.+.|..
T Consensus         7 p~~~~~~~~G~~v~L~C~~~g~P~p~i~W~~~~~~~~--~~~~~~-~-~-----~~~~L~I~~v~~~D~G~Y~C~a~n~~   77 (202)
T 1vca_A            7 PESRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPL--NGKVTN-E-G-----TTSTLTMNPVSFGNEHSYLCTATCES   77 (202)
T ss_dssp             SSSEEEEETTSCEEEEEEEESCSSCEEEEEETTCCCC--SSEEEE-E-T-----TEEEEEESSCCGGGCSEEEEEEEETT
T ss_pred             CCCcEEEcCCCcEEEEEeecCCCCCeEEEECCCCCCc--cceEEE-c-C-----CccEEEECcCCHHHCEEEEEEEEECC
Confidence            3344555699999999999998999999987432211  011111 0 0     23569999999999999999999987


Q ss_pred             CceEEEEE
Q psy4613          87 GEVESSIR   94 (96)
Q Consensus        87 g~~~~~~~   94 (96)
                      |.....+.
T Consensus        78 ~~~~~~~~   85 (202)
T 1vca_A           78 RKLEKGIQ   85 (202)
T ss_dssp             EEEEEEEE
T ss_pred             ceEeeEEE
Confidence            76554443

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.32  E-value=2.5e-12  Score=72.42  Aligned_cols=84  Identities=23%  Similarity=0.346  Sum_probs=62.7

Q ss_pred             CeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecc---cceEEEEeccccceEEEEEEEccCCCCCCeeE
Q psy4613           2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISS---ERYEVESISRSIFDFKMRLTIKKITKYDLGSY   78 (96)
Q Consensus         2 p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y   78 (96)
                      |.+...+....+..|+.+.+.|.+.  |.|.+.|++.++......   .++...        ...+|.|.+++..|+|.|
T Consensus       353 P~i~~~~~~~~v~~G~~~~l~C~~~--p~p~i~W~~~~~~~~~~~~~~~~~~~~--------~~g~L~i~~v~~~D~G~Y  422 (452)
T 3zyi_A          353 PFIMDAPRDLNISEGRMAELKCRTP--PMSSVKWLLPNGTVLSHASRHPRISVL--------NDGTLNFSHVLLSDTGVY  422 (452)
T ss_dssp             CCCSBCCCCEECCTTSCCEECCBCC--TTSEEEEECTTSCEECSSCCCSSCEEC--------TTSCEECSSCCTTCCEEE
T ss_pred             cccccccccccccCCCEEEEEEeCC--CCCcEEEEeCCCcEeccCCCCCCEEEC--------CCCeEEEeecCHHHCEEE
Confidence            4444455667889999999999988  889999998655543211   122211        124699999999999999


Q ss_pred             EEEEecCCCceEEEEEe
Q psy4613          79 KCIAKNSLGEVESSIRL   95 (96)
Q Consensus        79 ~c~~~~~~g~~~~~~~l   95 (96)
                      .|.+.|..|.....+.|
T Consensus       423 ~C~a~N~~G~~~~~~~l  439 (452)
T 3zyi_A          423 TCMVTNVAGNSNASAYL  439 (452)
T ss_dssp             EEEEECSSCEEEEEEEE
T ss_pred             EEEEEcCCCcEEEEEEE
Confidence            99999999988877665

>3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D

Probab=99.32  E-value=5.4e-11  Score=62.46  Aligned_cols=79  Identities=19%  Similarity=0.322  Sum_probs=54.8

Q ss_pred             eEEecCceeeecCCCcEEEEEEeeecccceeEEeecc--ceeE--ec---------ccceEEEEeccccceEEEEEEEcc
Q psy4613           3 VIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQ--GDMV--IS---------SERYEVESISRSIFDFKMRLTIKK   69 (96)
Q Consensus         3 ~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~--~~~~--~~---------~~~~~~~~~~~~~~~~~~~l~i~~   69 (96)
                      .+...+..+.+..|+.++|.|.+.+.+.+.+.|++..  ....  ..         ..++.....     .....|.|.+
T Consensus       140 ~~~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-----~~~~~L~I~~  214 (256)
T 3umt_A          140 QLTQSPSSLSASLGERVSITCRASQDIGSNLNWLQQKPDGTIKRLIYATSSLDSGVPKRFSGSRS-----GSDYSLTISS  214 (256)
T ss_dssp             CEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTCCEEEEEETTTEECTTSCTTEEEEEE-----TTEEEEEECS
T ss_pred             EEEcCCCeEEEECCCCEEEEEEEecCCCcEEEEEEECCCCCcEEEEEeccccCCccCCCEEEecC-----CCEEEEEECC
Confidence            3444455677889999999999999888899999842  1111  00         123322211     1245799999


Q ss_pred             CCCCCCeeEEEEEecCC
Q psy4613          70 ITKYDLGSYKCIAKNSL   86 (96)
Q Consensus        70 ~~~~d~g~y~c~~~~~~   86 (96)
                      ++..|.|.|.|.+.+..
T Consensus       215 v~~~D~G~Y~C~~~~~~  231 (256)
T 3umt_A          215 LESEDFVDYYCLQYASS  231 (256)
T ss_dssp             CCGGGCSEEEEEECSSS
T ss_pred             CChhHCEEEEEEEeeCC
Confidence            99999999999998853

>3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B*

Probab=99.32  E-value=4.8e-11  Score=60.93  Aligned_cols=81  Identities=16%  Similarity=0.272  Sum_probs=58.3

Q ss_pred             CeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccc--e--eE-e--------cccceEEEEeccccceEEEEEEEc
Q psy4613           2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQG--D--MV-I--------SSERYEVESISRSIFDFKMRLTIK   68 (96)
Q Consensus         2 p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~--~--~~-~--------~~~~~~~~~~~~~~~~~~~~l~i~   68 (96)
                      |.+..++..+.+..|+.+.|.|.+.+.+.+.+.|++...  .  .. .        ...++.....     .....|.|.
T Consensus         2 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-----~~~~~L~I~   76 (213)
T 3r06_A            2 IQMTQSPSSLPASLGDRVTINCQASQDISNYLNWYQQKPGKAPKLLIYYTNKLADGVPSRFSGSGS-----GRDSSFTIS   76 (213)
T ss_dssp             CCEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEE-----TTEEEEEES
T ss_pred             CeeEeCCCEEEecCCCcEEEEEEeCCCcCceEEEEEECCCCCcEEEEEEcCcCCCCCCCcEEEecc-----CCEEEEEEC
Confidence            556676778889999999999999998888999987321  1  11 0        1223333211     024579999


Q ss_pred             cCCCCCCeeEEEEEecCCC
Q psy4613          69 KITKYDLGSYKCIAKNSLG   87 (96)
Q Consensus        69 ~~~~~d~g~y~c~~~~~~g   87 (96)
                      +++..|.|.|.|.+.+..+
T Consensus        77 ~v~~~D~G~Y~C~~~~~~~   95 (213)
T 3r06_A           77 SLESEDIGSYYCQQYYNYP   95 (213)
T ss_dssp             SCCGGGCSEEEEEECSSSS
T ss_pred             CCCcccCEEEEEecccCCc
Confidence            9999999999999987643

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*

Probab=99.32  E-value=9.2e-12  Score=63.72  Aligned_cols=86  Identities=23%  Similarity=0.342  Sum_probs=60.4

Q ss_pred             CCeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecc-cceEEEEeccccceEEEEEEEccCCCCCCeeEE
Q psy4613           1 HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISS-ERYEVESISRSIFDFKMRLTIKKITKYDLGSYK   79 (96)
Q Consensus         1 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~   79 (96)
                      +|.+...+..+.+..|+.+.|.|.+.+.|.+.+.|++++..+.... ....... ....  ....+.|.+++..|.|.|.
T Consensus         9 ~P~i~~~p~~~~v~~G~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~-~~~~--~~~~l~i~~v~~~d~G~Y~   85 (217)
T 2vr9_A            9 SPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQF-KDGA--LFFYRTMQGKKEQDGGEYW   85 (217)
T ss_dssp             CCEEEECCCCEEECTTSCEEECCEEECSSCCEEEEEETTEECCCSSSSSSEEEC-TTSC--EEESSCCBSSSCBCCEEEE
T ss_pred             CCEEecCCCceEEeCCCcEEEEEEcCCCCCCeEEEEECCcCccCCCccceeEEe-cCCc--eEEEEEeccCCcccCceEE
Confidence            4777777778889999999999999998889999999865543211 1111111 1000  1123467788999999999


Q ss_pred             EEEecCCCce
Q psy4613          80 CIAKNSLGEV   89 (96)
Q Consensus        80 c~~~~~~g~~   89 (96)
                      |.+.+..|..
T Consensus        86 C~~~n~~g~~   95 (217)
T 2vr9_A           86 CVAKNRVGQA   95 (217)
T ss_dssp             EEEEETTEEE
T ss_pred             EEEecCCCcc
Confidence            9999877643

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*

Probab=99.31  E-value=2.2e-11  Score=60.66  Aligned_cols=73  Identities=22%  Similarity=0.277  Sum_probs=56.9

Q ss_pred             CCeEEecCceeeecCCCcEEEEEEeeecccce-eEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEE
Q psy4613           1 HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSI-NYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYK   79 (96)
Q Consensus         1 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~-~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~   79 (96)
                      +|.+...+....+..|+.+.|.|.+.+.+.+. +.|++++..+. .               ....|.|.+++..|.|.|.
T Consensus         7 ~p~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~~~~W~~~~~~~~-~---------------~~~~L~i~~~~~~d~G~Y~   70 (175)
T 1fnl_A            7 KAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLIS-S---------------QASSYFIDAATVNDSGEYR   70 (175)
T ss_dssp             CCEEEEESCCSEEETTCCEEEEEECCCBTTBCCCEEEETTEEEE-S---------------SCSEEEESSCCGGGCEEEE
T ss_pred             CCEEEEcCCceeeeCCCcEEEEeeCCCCCCCcceEEEECCEEcc-C---------------CceEEEEeCCCcccCEEEE
Confidence            36666666666789999999999999887775 78999865442 1               1257899999999999999


Q ss_pred             EEEecCCCce
Q psy4613          80 CIAKNSLGEV   89 (96)
Q Consensus        80 c~~~~~~g~~   89 (96)
                      |.+.+..+..
T Consensus        71 C~~~n~~~s~   80 (175)
T 1fnl_A           71 CQTNLSTLSD   80 (175)
T ss_dssp             EECSSSCCCC
T ss_pred             EEeeCCcccc
Confidence            9998865543

>1h5b_A Murine T cell receptor (TCR) valpha domain; immune response, immunoglobulin fold; 1.85A {Mus musculus} SCOP: b.1.1.1 PDB: 1h5b_C 1h5b_B

Probab=99.31  E-value=1.5e-10  Score=54.05  Aligned_cols=81  Identities=21%  Similarity=0.271  Sum_probs=54.8

Q ss_pred             EEecCceeeecCCCcEEEEEEeeecccceeEEeeccc--ee--Ee-------cccceEEEEeccccceEEEEEEEccCCC
Q psy4613           4 IHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQG--DM--VI-------SSERYEVESISRSIFDFKMRLTIKKITK   72 (96)
Q Consensus         4 ~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~--~~--~~-------~~~~~~~~~~~~~~~~~~~~l~i~~~~~   72 (96)
                      +...+..+.+..|+++.|.|.+.+.+ +.+.|++...  ..  +.       ...++......  .......|.|.+++.
T Consensus         4 v~q~p~~~~v~~G~~v~L~C~~~~~~-~~v~W~r~~~~~~~~~l~~~~~~~~~~~r~~~~~~~--~~~~~~~L~I~~v~~   80 (113)
T 1h5b_A            4 VEQSPSALSLHEGTDSALRCNFTTTM-RSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDS--ERARYSTLHIRDAQL   80 (113)
T ss_dssp             EEEECSEEEEETTCCEEEEEEESSCC-SEEEEEEECTTSCEEEEEEESSSEEEETTEEEECCS--SSSSEEEEEECSCCG
T ss_pred             eEECCCEEEEecCCcEEEEEEECCCC-ceEEEEEECCCCCeEEEEEECCCCccCCceEEEEcc--CCCCEEEEEECCCCh
Confidence            45566777899999999999988744 6899987531  11  10       12233221110  011346799999999


Q ss_pred             CCCeeEEEEEecCCC
Q psy4613          73 YDLGSYKCIAKNSLG   87 (96)
Q Consensus        73 ~d~g~y~c~~~~~~g   87 (96)
                      .|+|.|.|.+.+..|
T Consensus        81 ~DsG~Y~C~~~n~~~   95 (113)
T 1h5b_A           81 EDSGTYFCAAEASSG   95 (113)
T ss_dssp             GGCEEEEEEEECSSS
T ss_pred             hhCEEEEEEEecCCC
Confidence            999999999998654

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*

Probab=99.31  E-value=1e-10  Score=66.72  Aligned_cols=85  Identities=19%  Similarity=0.244  Sum_probs=62.0

Q ss_pred             eeeecCCCcEEEEEEeeecccce-eEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCc
Q psy4613          10 LVGAPIDTDVTLECYVEAYPKSI-NYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGE   88 (96)
Q Consensus        10 ~~~~~~g~~~~l~c~~~~~~~~~-~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~   88 (96)
                      ...+..|+.+.|.|.+.+.|.+. +.|++++..+.....++.... ....+.....|.|.++...|.|.|.|.+.|..|.
T Consensus       322 ~~~v~~G~~v~l~C~~~g~P~p~~v~W~k~g~~~~~~~~~~~~~~-~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~  400 (524)
T 2ec8_A          322 TVFVNDGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSE-NESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVN  400 (524)
T ss_dssp             EEEECTTCCEEEEEEEEEESCCCEEEEESSSCBCSSSBCCEESCC-SSSCCEEEEEEEECSCCGGGCEEEEEEEECSSCE
T ss_pred             eEEEcCCCcEEEEEEEeecCCCcEEEEEECCeeccCCccceeEEc-cCCCceeEEEEEEeecCcccCeEEEEEEEecCce
Confidence            56788999999999999999998 999998765532221221110 0001113478999999999999999999999998


Q ss_pred             eEEEEEe
Q psy4613          89 VESSIRL   95 (96)
Q Consensus        89 ~~~~~~l   95 (96)
                      ....+.|
T Consensus       401 ~~~~~~l  407 (524)
T 2ec8_A          401 AAIAFNV  407 (524)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            7666554

>2yc1_B Single chain antibody fragment 9004G; immune system-toxin complex, scorpion toxin; 1.90A {Homo sapiens} PDB: 2ybr_B 3lh2_L 3h3p_L 3lhp_L

Probab=99.30  E-value=1.2e-10  Score=56.78  Aligned_cols=78  Identities=18%  Similarity=0.298  Sum_probs=55.3

Q ss_pred             eEEecCceeeecCCCcEEEEEEeeecccceeEEeeccc----eeEec---------ccceEEEEeccccceEEEEEEEcc
Q psy4613           3 VIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQG----DMVIS---------SERYEVESISRSIFDFKMRLTIKK   69 (96)
Q Consensus         3 ~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~----~~~~~---------~~~~~~~~~~~~~~~~~~~l~i~~   69 (96)
                      .+..++..+.+..|++++|.|.+...+.+.+.|++...    ..+..         ..++.....     .....|.|.+
T Consensus        18 ~v~q~p~~v~v~~G~sVtL~C~~s~~~~~~v~Wyrq~~g~~~~~li~~~~~~~~~~~~Rfs~~~~-----~~~~sL~I~~   92 (146)
T 2yc1_B           18 VLTQSPATLSVSPGERATLSCRASQSVRSYLAWYQQKPGQAPRLLFSDASNRATGIPARFTGSGS-----GTDFTLTISS   92 (146)
T ss_dssp             CEEEECSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEE-----TTEEEEEESS
T ss_pred             eEEEeCCEEEEecCCCEEEEEEECCCCCCEEEEEEECCCCCCEEEEEeCCccCCCcCCCeEEecC-----CCEEEEEECC
Confidence            45566777889999999999998876777899998531    12111         123332210     0235799999


Q ss_pred             CCCCCCeeEEEEEecC
Q psy4613          70 ITKYDLGSYKCIAKNS   85 (96)
Q Consensus        70 ~~~~d~g~y~c~~~~~   85 (96)
                      ++..|+|.|.|.+.+.
T Consensus        93 v~~~DsG~Y~C~~~~~  108 (146)
T 2yc1_B           93 LEPEDFAIYYCQQYRY  108 (146)
T ss_dssp             CCGGGCSEEEEEECSS
T ss_pred             CCHHHCEEEEEEEecC
Confidence            9999999999999875

>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*

Probab=99.30  E-value=5.3e-12  Score=64.47  Aligned_cols=79  Identities=16%  Similarity=0.201  Sum_probs=53.1

Q ss_pred             cCCCcEEEEEEeeecc-c-ceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCceEE
Q psy4613          14 PIDTDVTLECYVEAYP-K-SINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVES   91 (96)
Q Consensus        14 ~~g~~~~l~c~~~~~~-~-~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~~~   91 (96)
                      ..|..+.|.|.+.+.+ . +.+.|++++..+........... ....+.....|.|..+...|.|.|.|.+.|..+....
T Consensus       127 ~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~-~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~  205 (213)
T 3mj8_L          127 LKTNQATLVCMINGFYPADVAVTWEADGTPITQGVKTTQPSK-SDSKYMATSYLTMTADAWKSRNTFICKVTHGGNTVEK  205 (213)
T ss_dssp             HTTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEE-ETTEEEEEEEEEEESHHHHSCSCEEEEEEETTEEEEE
T ss_pred             ccCCcEEEEEEeeceeCCCeEEEEEcCCcccCCCcccCCcCc-cCCcEEEEEEEEEeHHHcCCCCEEEEEEEECCccEEe
Confidence            3699999999998853 3 38999998765431100000000 1112224467899999999999999999999877665


Q ss_pred             EE
Q psy4613          92 SI   93 (96)
Q Consensus        92 ~~   93 (96)
                      .+
T Consensus       206 ~~  207 (213)
T 3mj8_L          206 SL  207 (213)
T ss_dssp             EE
T ss_pred             ee
Confidence            54

>4gos_A V-SET domain-containing T-cell activation inhibit; immunoglobulin domain, glycoprotein, disulfide bond, immunit adaptive immunity; HET: NAG BMA MAN; 1.59A {Homo sapiens}

Probab=99.30  E-value=1.5e-11  Score=58.56  Aligned_cols=88  Identities=22%  Similarity=0.308  Sum_probs=56.2

Q ss_pred             ecCceeeecCCCcEEEEEEeeeccc---ceeEEeecccee---Eec-------------ccceEEEEeccccceEEEEEE
Q psy4613           6 VPNQLVGAPIDTDVTLECYVEAYPK---SINYWVRDQGDM---VIS-------------SERYEVESISRSIFDFKMRLT   66 (96)
Q Consensus         6 ~~~~~~~~~~g~~~~l~c~~~~~~~---~~~~w~~~~~~~---~~~-------------~~~~~~~~~~~~~~~~~~~l~   66 (96)
                      .++..+...+|++++|.|.+.....   ..+.|++.+...   ...             ..+..+  ...........|.
T Consensus        10 ~~~~~v~g~vG~~v~L~C~~~~~~~~~~~~V~W~k~~~~~~v~~~~~g~~~~~~~~~~~~~R~~~--~~~~~~~g~~sL~   87 (125)
T 4gos_A           10 VTTVASAGNIGEDGILSCTFEPDIKLSDIVIQWLKEGVLGLVHEFKEGKDELSEQDEMFRGRTAV--FADQVIVGNASLR   87 (125)
T ss_dssp             EEEECEEEETTSCEEEEEEECCCSCGGGCEEEEEETTCSSBSEEEETTEECCTTBCGGGTTCEEE--CTTTGGGTBCCEE
T ss_pred             ccCceEEEeCCCCEEEEEEEcCCcccCcEEEEEEEeccCceEEEEEeecccccccCccccceEEE--ecCCccCCeEEEE
Confidence            4445567789999999999864332   268898864211   000             011111  1111011134699


Q ss_pred             EccCCCCCCeeEEEEEecCCCceEEEEEe
Q psy4613          67 IKKITKYDLGSYKCIAKNSLGEVESSIRL   95 (96)
Q Consensus        67 i~~~~~~d~g~y~c~~~~~~g~~~~~~~l   95 (96)
                      |.+++..|+|.|.|.+.+..|.....+.|
T Consensus        88 I~~v~~~D~G~Y~C~v~~~~g~~~~~v~L  116 (125)
T 4gos_A           88 LKNVQLTDAGTYKCYIITSKGKGNANLEY  116 (125)
T ss_dssp             ESSCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred             ECCCChHHCEEEEEEEEeCCCeEEEEEEE
Confidence            99999999999999999988877766654

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*

Probab=99.30  E-value=2.4e-10  Score=65.26  Aligned_cols=92  Identities=20%  Similarity=0.337  Sum_probs=64.6

Q ss_pred             CeEEecCceeeecCCCcEEEEEEeeecccce-eEEeecccee-EecccceEEEEeccccceEEEEEEEccCCCCCCeeEE
Q psy4613           2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSI-NYWVRDQGDM-VISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYK   79 (96)
Q Consensus         2 p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~-~~w~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~   79 (96)
                      |.+...+....+..|+.+.|.|.+.+.+.+. +.|++++... .....+....  ..........|.|.++...|.|.|.
T Consensus       212 p~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~~i~W~~~~~~~~~~~~~~~~~~--~~~~~~~~~~L~I~~~~~~D~G~Y~  289 (524)
T 2ec8_A          212 PVVSVSKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHH--GDFNYERQATLTISSARVNDSGVFM  289 (524)
T ss_dssp             CEEECSCSEEEEETTSCEEEEEEEEESSTTCEEEEEETTCSCCCCEEEEEEEC--SSSCEEEEEEEEESSCCTTTCEEEE
T ss_pred             CcEEecCCcceEEcCCcEEEEEEEecCCCcEEEEEEeCCCCCccccccccccc--cCCccceEEEEEECCCCHHHCEEEE
Confidence            5555555666789999999999999988886 9999987652 1011111110  0001124578999999999999999


Q ss_pred             EEEecCCCceEEEEEe
Q psy4613          80 CIAKNSLGEVESSIRL   95 (96)
Q Consensus        80 c~~~~~~g~~~~~~~l   95 (96)
                      |.+.|..|.....+.|
T Consensus       290 C~a~n~~g~~~~~~~l  305 (524)
T 2ec8_A          290 CYANNTFGSANVTTTL  305 (524)
T ss_dssp             EEEECSSCEEEEEEEE
T ss_pred             EEEEecCCceEEEEEE
Confidence            9999998877655543

>1sq2_N Novel antigen receptor; immunoglobulin fold, protein-protein complex, hydrolase/immune system complex; 1.45A {Ginglymostoma cirratum} SCOP: b.1.1.1 PDB: 1t6v_N

Probab=99.30  E-value=1.1e-10  Score=54.63  Aligned_cols=78  Identities=21%  Similarity=0.299  Sum_probs=54.7

Q ss_pred             EEecCceeeecCCCcEEEEEEeeecc--cceeEEeeccc--ee--E-ecccceEEEEeccccceEEEEEEEccCCCCCCe
Q psy4613           4 IHVPNQLVGAPIDTDVTLECYVEAYP--KSINYWVRDQG--DM--V-ISSERYEVESISRSIFDFKMRLTIKKITKYDLG   76 (96)
Q Consensus         4 ~~~~~~~~~~~~g~~~~l~c~~~~~~--~~~~~w~~~~~--~~--~-~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g   76 (96)
                      +...+..+.+..|++++|.|.+.+.+  .+.+.|++...  ..  . ....++........   ....|.|.+++.+|+|
T Consensus         3 v~q~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~r~~~~~~~~~---~~~~L~I~~~~~~DsG   79 (113)
T 1sq2_N            3 VDQTPRSVTKETGESLTINCVLRDASYALGSTCWYRKKSGEGNEESISKGGRYVETVNSGS---KSFSLRINDLTVEDGG   79 (113)
T ss_dssp             EEEECSEEEECTTCCEEEEEEECSCSSCCCCEEEEEEETTSCCCEECCCBTTEEEEEETTT---TEEEEEECSCCGGGCE
T ss_pred             eEeCCccEEEecCCCEEEEEEECCCcCCCCEEEEEEeCCCCCceEeEEeCCCEEEEEeCCC---CEEEEEECCCChhhCE
Confidence            45566778899999999999987655  56899998631  11  1 12234443221111   2467999999999999


Q ss_pred             eEEEEEec
Q psy4613          77 SYKCIAKN   84 (96)
Q Consensus        77 ~y~c~~~~   84 (96)
                      .|.|.+.+
T Consensus        80 ~Y~C~~~~   87 (113)
T 1sq2_N           80 TYRCGLGV   87 (113)
T ss_dssp             EEEEEECB
T ss_pred             EEEEEEEe
Confidence            99999987

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}

Probab=99.29  E-value=8e-11  Score=59.58  Aligned_cols=70  Identities=16%  Similarity=0.298  Sum_probs=49.7

Q ss_pred             eecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCC
Q psy4613          12 GAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLG   87 (96)
Q Consensus        12 ~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g   87 (96)
                      .+..|..+.|.|.+.+ +.+.+.|++++...............     .....|.|.+++..|.|.|.|.+.|..+
T Consensus       110 ~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~~~-----~~~~~L~i~~v~~~d~G~Y~C~a~n~~~  179 (196)
T 3p2t_A          110 LVTSGKSVTLLCQSRS-PMDTFLLCKERAAHPLLCLRSEHGAQ-----QHQAEFPMSPVTSVHGGTYRCFSSHGFS  179 (196)
T ss_dssp             EECTTCCEEEEEEEEE-EEEEEEEEETTCCCGGGSEEEEEEEE-----EEEEEEEECSCCGGGCEEEEEEEECGGG
T ss_pred             eecCCCeEEEEEecCC-CCCEEEEEeCCCcccceeeccccccc-----CcceEEEeCCCcccCCCeEEEEEEcCCC
Confidence            4678999999999887 45688999986544221111111000     1346799999999999999999999765

>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A*

Probab=99.29  E-value=1.6e-10  Score=59.48  Aligned_cols=74  Identities=12%  Similarity=0.253  Sum_probs=55.3

Q ss_pred             ceeeecCCCcEEEEEEeeecccc--eeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCC
Q psy4613           9 QLVGAPIDTDVTLECYVEAYPKS--INYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSL   86 (96)
Q Consensus         9 ~~~~~~~g~~~~l~c~~~~~~~~--~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~   86 (96)
                      ..+.+..|.++.|.|.+ +.+.|  .+.|.+....+    .+.....       ....|.|.+++..|.|.|.|.+.+..
T Consensus        15 ~~v~v~~G~sv~L~C~a-~~p~P~~~i~W~~~~~~l----~~~~~~~-------~~~~L~I~~v~~~d~G~Y~C~a~n~~   82 (210)
T 1gsm_A           15 PVVAVALGASRQLTCRL-ACADRGASVQWRGLDTSL----GAVQSDT-------GRSVLTVRNASLSAAGTRVCVGSCGG   82 (210)
T ss_dssp             SEEEEETTCCEEEEEEE-CCSSTTCEEEEESSTTTT----CCEEEES-------SEEEEEECSCCGGGCEEEEEEEEETT
T ss_pred             CceEEeCCCCEEEEEEC-CCCCCCcceEEeeccccc----CcEEecC-------CccEEEECccCcccCceEEEEEEeCC
Confidence            34688999999999999 88888  99998854322    1211111       34779999999999999999999987


Q ss_pred             CceEEEEE
Q psy4613          87 GEVESSIR   94 (96)
Q Consensus        87 g~~~~~~~   94 (96)
                      +.....+.
T Consensus        83 ~~~~~~~~   90 (210)
T 1gsm_A           83 RTFQHTVQ   90 (210)
T ss_dssp             EEEEEEEE
T ss_pred             CceEEEEE
Confidence            76554443

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X

Probab=99.29  E-value=2.6e-12  Score=65.40  Aligned_cols=76  Identities=18%  Similarity=0.331  Sum_probs=56.1

Q ss_pred             eecCCCcEEEEEEe-eecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCceE
Q psy4613          12 GAPIDTDVTLECYV-EAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVE   90 (96)
Q Consensus        12 ~~~~g~~~~l~c~~-~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~~   90 (96)
                      .+..|..+.|.|.+ .+.|.+.+.|++++...........      ..  ....|.|.++...|.|.|.|.+.|..|...
T Consensus       132 ~~~~g~~v~l~C~~~~g~p~~~v~W~~~~~~~~~~~~~~~------~~--~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~  203 (214)
T 3jz7_A          132 SEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWLA------EM--TSPVISVKNASSEYSGTYSCTVQNRVGSDQ  203 (214)
T ss_dssp             CCBTTCCEEEEEECSBCCSSCEEEEEECSTTCCCCGGGGG------GT--TSSEEEECSCCGGGCEEEEEEEECSSCEEE
T ss_pred             ceecCCcEEEEecCCCCCCCCEEEEEECCCCCccCcccee------cc--CCCEEEEecCCHHHCEEEEEEEEcCCCcEE
Confidence            36779999999999 7889999999985432211111000      00  124799999999999999999999999887


Q ss_pred             EEEEe
Q psy4613          91 SSIRL   95 (96)
Q Consensus        91 ~~~~l   95 (96)
                      ..+.|
T Consensus       204 ~~~~l  208 (214)
T 3jz7_A          204 CMLRL  208 (214)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            77765

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}

Probab=99.29  E-value=3.1e-10  Score=60.30  Aligned_cols=90  Identities=12%  Similarity=0.274  Sum_probs=60.4

Q ss_pred             CeEEecCceeeecCCCcEEEEEEeeecccc-eeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEE
Q psy4613           2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKS-INYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKC   80 (96)
Q Consensus         2 p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c   80 (96)
                      |.+...+....+..|+.+.|.|.+.+.+.+ .+.|.+++..+... ......   ...+.....|.|.++...|.|.|.|
T Consensus       187 p~i~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~w~~~~~~~~~~-~~~~~~---~~~~~~~~~L~i~~v~~~d~G~Y~C  262 (292)
T 4dkd_C          187 PALTLVPAELVRIRGEAAQIVCSASSVDVNFDVFLQHNNTKLAIP-QQSDFH---NNRYQKVLTLNLDQVDFQHAGNYSC  262 (292)
T ss_dssp             CEEEEESSCBCCCSSSCEEEEEEEEESSSCCEEECCBSSCCCCCC-BEEEEE---TTEEEEEEEEEESSCCTTSCEEEEE
T ss_pred             CeEEccCCceeEecCCCEEEEEEecCCCCceEEEEeCCCcccccC-ccceec---cceeeeEEEEEECccChhcCeEEEE
Confidence            444444455556789999999999986654 56676665433211 111111   1111234689999999999999999


Q ss_pred             EEecCCCceEEEEEe
Q psy4613          81 IAKNSLGEVESSIRL   95 (96)
Q Consensus        81 ~~~~~~g~~~~~~~l   95 (96)
                      .+.|..|.....+.|
T Consensus       263 ~a~N~~g~~~~~~~l  277 (292)
T 4dkd_C          263 VASNVQGKHSTSMFF  277 (292)
T ss_dssp             EEECSSCEEEEEEEE
T ss_pred             EEecCCCCceeEEEE
Confidence            999999988777655

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...

Probab=99.29  E-value=4.9e-11  Score=59.74  Aligned_cols=69  Identities=14%  Similarity=0.134  Sum_probs=55.7

Q ss_pred             eeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCceE
Q psy4613          11 VGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVE   90 (96)
Q Consensus        11 ~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~~   90 (96)
                      ..+..|+.+.|.|.+.+.|.+.+.|++++.....                ....|.|.++...|.|.|.|.+.+..+...
T Consensus       107 ~~v~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~----------------~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~  170 (184)
T 2ny1_B          107 THLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQ----------------GGKTLSVSQLELQDSGTWTCTVLQNQKKVE  170 (184)
T ss_dssp             SEEETTCCEEEEEECCTTCCCEEEEECTTSCEEE----------------ESSEEEESSCCGGGCEEEEEEEEETTEEEE
T ss_pred             ceeecCCCEEEEEEcCCCCCCEEEEEeCCCcccc----------------CceEEEEecCCcCCCeEEEEEEEECCceEE
Confidence            4568899999999998889999999988644311                235789999999999999999999887766


Q ss_pred             EEEEe
Q psy4613          91 SSIRL   95 (96)
Q Consensus        91 ~~~~l   95 (96)
                      ..+.|
T Consensus       171 ~~~~l  175 (184)
T 2ny1_B          171 FKIDI  175 (184)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            66544

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*

Probab=99.29  E-value=2.5e-11  Score=62.66  Aligned_cols=78  Identities=14%  Similarity=0.152  Sum_probs=54.5

Q ss_pred             CCeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEE--EEEEccCCCCCCeeE
Q psy4613           1 HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKM--RLTIKKITKYDLGSY   78 (96)
Q Consensus         1 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~i~~~~~~d~g~y   78 (96)
                      +|.+...+. ..+..|+.++|.|.+.+ +.+.+.|++++..+..........       ....  .|.|.+++..|+|.|
T Consensus         9 ~P~i~~~p~-~~v~~G~~vtL~C~~~~-~~~~~~W~k~g~~~~~~~~~~~~~-------~~~~~~~L~I~~v~~~D~G~Y   79 (218)
T 1uct_A            9 MPFISAKSS-PVIPLDGSVKIQCQAIR-EAYLTQLMIIKNSTYREIGRRLKF-------WNETDPEFVIDHMDANKAGRY   79 (218)
T ss_dssp             CCCEEESSC-SEEETTCCEEEEECCCT-TCSEEEEEEEETTEEEECSEECC-----------CCCEEEECSCCGGGCEEE
T ss_pred             CCEEEecCC-CccCCCCCEEEEEEcCC-CCCEEEEEECCCcccccccccCCC-------CcceeeEEEEcccccccCEEE
Confidence            356665555 46889999999999876 677899999865543211110000       0123  799999999999999


Q ss_pred             EEEEecCCC
Q psy4613          79 KCIAKNSLG   87 (96)
Q Consensus        79 ~c~~~~~~g   87 (96)
                      .|.+.+..|
T Consensus        80 ~C~a~n~~~   88 (218)
T 1uct_A           80 QCQYRIGHY   88 (218)
T ss_dssp             EEEEEETTT
T ss_pred             EEEEEcCCC
Confidence            999998765

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A

Probab=99.28  E-value=4.9e-11  Score=64.39  Aligned_cols=74  Identities=24%  Similarity=0.323  Sum_probs=58.3

Q ss_pred             eeeecCCCcEEEEEEeeecccce-eEEeeccceeEecccceEEEEeccccceEEEEEEEc-cCCCCCCeeEEEEEecCCC
Q psy4613          10 LVGAPIDTDVTLECYVEAYPKSI-NYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIK-KITKYDLGSYKCIAKNSLG   87 (96)
Q Consensus        10 ~~~~~~g~~~~l~c~~~~~~~~~-~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~-~~~~~d~g~y~c~~~~~~g   87 (96)
                      ...+..|+.+.|.|.+.+.|.+. +.|++++..+. .  ....         ....|.|. ++...|.|.|.|.+.|..|
T Consensus       241 ~~~~~~g~~~~l~C~~~g~p~p~~i~W~~~~~~~~-~--~~~~---------~~~~L~i~~~v~~~d~G~Y~C~a~N~~G  308 (331)
T 3u83_A          241 GNWYLQRMDVKLTCKADANPPATEYHWTTLNGSLP-K--GVEA---------QNRTLFFKGPINYSLAGTYICEATNPIG  308 (331)
T ss_dssp             SCCBTTCCCEEEEEEEEEESCCCEEEEEETTBSCC-T--TEEE---------ETTEEEECSCCCGGGCEEEEEEEEETTE
T ss_pred             CceEeCCCeEEEEEeCcCCCCCCEEEEEECCCccc-c--ccee---------cCcEEEEeCCCccccCeEEEEEEEeccc
Confidence            34467899999999999999998 99999876543 1  1111         12568899 8999999999999999999


Q ss_pred             ceEEEEEe
Q psy4613          88 EVESSIRL   95 (96)
Q Consensus        88 ~~~~~~~l   95 (96)
                      .....+.|
T Consensus       309 ~~~~~~~l  316 (331)
T 3u83_A          309 TRSGQVEV  316 (331)
T ss_dssp             EEEEEEEE
T ss_pred             cceEEEEE
Confidence            88777665

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.28  E-value=5.9e-12  Score=69.32  Aligned_cols=82  Identities=20%  Similarity=0.256  Sum_probs=62.6

Q ss_pred             CCeEEecCceeeecCCCcEEEEEEeee-cccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEE
Q psy4613           1 HPVIHVPNQLVGAPIDTDVTLECYVEA-YPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYK   79 (96)
Q Consensus         1 ~p~~~~~~~~~~~~~g~~~~l~c~~~~-~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~   79 (96)
                      +|.+...+..+.+..|+.+.|.|.+.+ .+.+.+.|++++..+.....+.....       ....|.|.+++..|.|.|.
T Consensus         6 ~P~~~~~p~~~~v~~G~~v~l~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~-------~~~~L~i~~~~~~D~G~Y~   78 (395)
T 1bih_A            6 YPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRK-------DEGSLVFLRPQASDEGHYQ   78 (395)
T ss_dssp             CCEECCCCSEEEEETTSCEEECCCEESCCSSCEEEEEESSSBCCTTTTTEEECT-------TSCCEEESSCCGGGCEEEE
T ss_pred             CCEeecCCCceEEeCCCEEEEEEEEecCCCCceEEEEECCcCcccccceEEEec-------CCceEEEecCCCCCCcEEE
Confidence            477777777888999999999999998 78889999998765532221221111       1246899999999999999


Q ss_pred             EEEecCCCce
Q psy4613          80 CIAKNSLGEV   89 (96)
Q Consensus        80 c~~~~~~g~~   89 (96)
                      |.+.+..|..
T Consensus        79 C~a~n~~g~~   88 (395)
T 1bih_A           79 CFAETPAGVA   88 (395)
T ss_dssp             EEEEETTEEE
T ss_pred             EEEEeCCCeE
Confidence            9999977653

>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A

Probab=99.28  E-value=5e-11  Score=61.02  Aligned_cols=80  Identities=18%  Similarity=0.253  Sum_probs=56.9

Q ss_pred             CeEEecCceeeecCCCcEEEEEEeeec-ccceeEEeecc---c-eeE-ecc------------cceEEEEeccccceEEE
Q psy4613           2 PVIHVPNQLVGAPIDTDVTLECYVEAY-PKSINYWVRDQ---G-DMV-ISS------------ERYEVESISRSIFDFKM   63 (96)
Q Consensus         2 p~~~~~~~~~~~~~g~~~~l~c~~~~~-~~~~~~w~~~~---~-~~~-~~~------------~~~~~~~~~~~~~~~~~   63 (96)
                      |.+..++ .+.+..|+.+.|.|.+.+. +.+.+.|++..   . ... ...            .++.+..     .....
T Consensus         2 ~~v~~~p-~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-----~~~~~   75 (218)
T 3s96_B            2 LVLTQSS-SASFSLGASAKLTCTLNSQHSTYTIEWYQQQPLKPPKYVMELKKDGSHSTGDGIPDRFSGSS-----SGADR   75 (218)
T ss_dssp             CSEECCS-EEEEETTSCEEEEEEECGGGTTCCEEEEEECTTSCCEEEEEECTTSCEEECSSCCTTEEEEE-----ETTEE
T ss_pred             CeEEeCC-cEEECCCCcEEEEEECCCCCCCcEEEEEEECCCCCeEEEEEEcccCccccCCCcccceEEec-----CCceE
Confidence            4566677 8889999999999999998 88899999832   1 111 000            1332221     01246


Q ss_pred             EEEEccCCCCCCeeEEEEEecCCC
Q psy4613          64 RLTIKKITKYDLGSYKCIAKNSLG   87 (96)
Q Consensus        64 ~l~i~~~~~~d~g~y~c~~~~~~g   87 (96)
                      .|.|.+++..|.|.|.|.+.+..|
T Consensus        76 ~L~I~~v~~~D~G~Y~C~~~~~~~   99 (218)
T 3s96_B           76 YLSISNIQPEDEAIYICGVGDTIK   99 (218)
T ss_dssp             EEEESSCCGGGCEEEEEEEEEEET
T ss_pred             EEEEccCCcccCEEEEEEEecCCC
Confidence            799999999999999999988665

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C

Probab=99.28  E-value=2.9e-11  Score=62.18  Aligned_cols=87  Identities=21%  Similarity=0.273  Sum_probs=59.4

Q ss_pred             ceeeecCCCcEEEEEEeeecccceeEEee----ccceeEecccce-EEEEeccccceEEEEEEEccCCCCCCeeEEEEEe
Q psy4613           9 QLVGAPIDTDVTLECYVEAYPKSINYWVR----DQGDMVISSERY-EVESISRSIFDFKMRLTIKKITKYDLGSYKCIAK   83 (96)
Q Consensus         9 ~~~~~~~g~~~~l~c~~~~~~~~~~~w~~----~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~   83 (96)
                      ....+..|..+.|.|.+.+.|.+.+.|++    ++..+....... ...............|.|.++...|.|.|.|.+.
T Consensus       126 ~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~  205 (231)
T 3ojm_B          126 ANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVS  205 (231)
T ss_dssp             CCEEEETTCCEEEECCEECSSCCEEEEEEECCBTTBSBCTTSCBCEEEEEECSTTCSCTTEEEECSCCGGGCEEEEEEEE
T ss_pred             CceEEEeCCcEEEEEEEecCCCCEEEEEECCCCCCccccCCCcceEeEecccccccCCccEEEEecCCHHHCeEEEEEEE
Confidence            44567889999999999999999999998    443332111111 1111111111122469999999999999999999


Q ss_pred             cCCCceEEEEEe
Q psy4613          84 NSLGEVESSIRL   95 (96)
Q Consensus        84 ~~~g~~~~~~~l   95 (96)
                      |..|.....+.|
T Consensus       206 n~~g~~~~~~~l  217 (231)
T 3ojm_B          206 NYIGQANQSAWL  217 (231)
T ss_dssp             ETTEEEEEEEEE
T ss_pred             eccceEeeEEEE
Confidence            999987666554

>1eeq_A Kappa-4 immunoglobulin (light chain); protein stability, hydrogen bonds, immune system; 1.50A {Homo sapiens} SCOP: b.1.1.1 PDB: 1eeu_A 1lve_A 2lve_A 3lve_A 5lve_A 4lve_A 1efq_A 1qac_A 1ek3_A 2imm_A 1mvu_A 2ap2_A 1ap2_A 3bd3_A* 3bd4_A* 3bd5_A* 2imn_A 3dus_A* 3duu_A* 3dv4_A* ...

Probab=99.28  E-value=9e-11  Score=54.90  Aligned_cols=78  Identities=18%  Similarity=0.330  Sum_probs=54.3

Q ss_pred             eEEecCceeeecCCCcEEEEEEeeecc------cceeEEeeccc----eeEe-c--------ccceEEEEeccccceEEE
Q psy4613           3 VIHVPNQLVGAPIDTDVTLECYVEAYP------KSINYWVRDQG----DMVI-S--------SERYEVESISRSIFDFKM   63 (96)
Q Consensus         3 ~~~~~~~~~~~~~g~~~~l~c~~~~~~------~~~~~w~~~~~----~~~~-~--------~~~~~~~~~~~~~~~~~~   63 (96)
                      .+..++..+.+..|+++.|.|.+.+.+      .+.+.|++...    ..+. .        ..++.....     ....
T Consensus         3 ~v~q~p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~-----~~~~   77 (114)
T 1eeq_A            3 VLTQSPDSLAVSLGERATINCKSSQSVLDSSNSKNYLAWYQQKPGQPPKLLIYWASTRESGVPDRFSGSGS-----GTDF   77 (114)
T ss_dssp             CEEEECSEEEECTTSCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEE-----TTEE
T ss_pred             ceEecCCeEEEcCCCeEEEEEEcCCCccccccCCccEEEEEECCCCCCEEEEEecCccCCCCCCCEEEeec-----CCEE
Confidence            355666778899999999999988765      36899998531    1111 1        123332210     0235


Q ss_pred             EEEEccCCCCCCeeEEEEEecC
Q psy4613          64 RLTIKKITKYDLGSYKCIAKNS   85 (96)
Q Consensus        64 ~l~i~~~~~~d~g~y~c~~~~~   85 (96)
                      .|.|.+++..|+|.|.|.+.+.
T Consensus        78 ~L~I~~v~~~DsG~Y~C~~~~~   99 (114)
T 1eeq_A           78 TLTISSLQAEDVAVYYCQQYYS   99 (114)
T ss_dssp             EEEESSCCGGGCEEEEEEECSS
T ss_pred             EEEECCCCcccCEEEEEEEeeC
Confidence            7999999999999999999875

>2vsd_A CHIR AB1; immune system receptor, FC receptor; HET: NAG NDG MAN; 1.82A {Gallus gallus}

Probab=99.28  E-value=1.9e-11  Score=56.52  Aligned_cols=74  Identities=15%  Similarity=0.157  Sum_probs=51.7

Q ss_pred             CCeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEE
Q psy4613           1 HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKC   80 (96)
Q Consensus         1 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c   80 (96)
                      +|.+...+.. .+..|++++|.|...+. ...+.|++++......  +.     .  .......|.|..++..|+|.|.|
T Consensus         5 kP~i~~~p~~-~v~~G~~VtL~C~~~~~-~~~~~w~k~g~~~~~~--~~-----~--~~~~~~~l~I~~v~~~dsG~Y~C   73 (105)
T 2vsd_A            5 QPSLSLHPSQ-GVSLGDTVTLRCHLPRM-AAWVQLWLNGTLRFDK--EK-----D--KEQDAAEFSFAVTNLEDAGTYQC   73 (105)
T ss_dssp             CCEEEEESCS-SCCTTCEEEEEEECCSS-CEEEEEEETTEEEEEE--EE-----C--TTCSEEEEEEECCSGGGCEEEEE
T ss_pred             CCEEEeCCCC-CcCcCCCEEEEEEcCCC-CcEEEEEECCccceee--ec-----c--CCCCEEEEEECCCCHHHCeEEEE
Confidence            3666655544 58899999999998764 3567798886433211  00     0  01134679999999999999999


Q ss_pred             EEecC
Q psy4613          81 IAKNS   85 (96)
Q Consensus        81 ~~~~~   85 (96)
                      .+.+.
T Consensus        74 ~~~n~   78 (105)
T 2vsd_A           74 RYQVS   78 (105)
T ss_dssp             EEEEE
T ss_pred             EEEcC
Confidence            99874

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A

Probab=99.28  E-value=4.5e-11  Score=69.60  Aligned_cols=71  Identities=21%  Similarity=0.235  Sum_probs=57.8

Q ss_pred             CceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCC
Q psy4613           8 NQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLG   87 (96)
Q Consensus         8 ~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g   87 (96)
                      +....+..|+.+.|.|.+.+.|.+.+.|++++..+.                 ....|.|.++...|.|.|.|.+.|..|
T Consensus       566 ~~~~~v~~g~~~~l~C~~~g~p~p~v~W~~~g~~i~-----------------~~~~L~i~~~~~~d~G~Y~C~a~N~~G  628 (642)
T 1e07_A          566 PPDSSYLSGANLNLSCHSASNPSPQYSWRINGIPQQ-----------------HTQVLFIAKITPNNNGTYACFVSNLAT  628 (642)
T ss_pred             CCceeEEcCCcEEEEEEeccCCCCeEEEEECCEECc-----------------cCceEEECcccccCCeEEEEEEEeccc
Confidence            344667889999999999999999999999864432                 114688999999999999999999999


Q ss_pred             ceEEEEEe
Q psy4613          88 EVESSIRL   95 (96)
Q Consensus        88 ~~~~~~~l   95 (96)
                      ....+..|
T Consensus       629 ~~~~s~~l  636 (642)
T 1e07_A          629 GRNNSIVK  636 (642)
T ss_pred             CcceeEEE
Confidence            87666544

>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...

Probab=99.28  E-value=8.4e-11  Score=60.04  Aligned_cols=80  Identities=18%  Similarity=0.290  Sum_probs=57.0

Q ss_pred             EEecCceeeecCCCcEEEEEEeeecccceeEEeeccc--ee--Ee---------cccceEEEEeccccceEEEEEEEccC
Q psy4613           4 IHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQG--DM--VI---------SSERYEVESISRSIFDFKMRLTIKKI   70 (96)
Q Consensus         4 ~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~--~~--~~---------~~~~~~~~~~~~~~~~~~~~l~i~~~   70 (96)
                      +..++..+.+..|+.+.|.|.+.+.+.+.+.|++...  ..  ..         ...++.....     .....|.|.++
T Consensus         4 v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-----~~~~~L~I~~v   78 (213)
T 3d9a_L            4 LTQSPATLSVTPGNSVSLSCRASQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGS-----GTDFTLSINSV   78 (213)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEE-----TTEEEEEESSC
T ss_pred             EEeCCccEEEeCCCcEEEEEECCCCCCCCEEEEEeCCCCCcEEEEEEcccccccccccEEEEcC-----CCEEEEEECCC
Confidence            4455677889999999999999998888999987431  11  00         0123332210     02357999999


Q ss_pred             CCCCCeeEEEEEecCCCc
Q psy4613          71 TKYDLGSYKCIAKNSLGE   88 (96)
Q Consensus        71 ~~~d~g~y~c~~~~~~g~   88 (96)
                      +..|.|.|.|.+.+..+.
T Consensus        79 ~~~D~G~Y~C~~~~~~~~   96 (213)
T 3d9a_L           79 ETEDFGMYFCQQSNSWPY   96 (213)
T ss_dssp             CGGGCEEEEEEECSSSSC
T ss_pred             ChhhCEEEEEeeecCCcc
Confidence            999999999999987653

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}

Probab=99.28  E-value=2.8e-10  Score=60.84  Aligned_cols=80  Identities=21%  Similarity=0.281  Sum_probs=60.6

Q ss_pred             eeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEcc-CCCCCCeeEEEEEecCCCc
Q psy4613          10 LVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKK-ITKYDLGSYKCIAKNSLGE   88 (96)
Q Consensus        10 ~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~-~~~~d~g~y~c~~~~~~g~   88 (96)
                      ...+..|..+.|.|.+.+.|.+.+.|++++..+. ...++......     ....|.|.+ +...|.|.|.|.+.|..|.
T Consensus       113 ~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~-~~~~~~~~~~~-----~~~~l~i~~~~~~~d~G~Y~C~a~N~~G~  186 (305)
T 2nzi_A          113 AVHALRGEVVSIKIPFSGKPDPVITWQKGQDLID-NNGHYQVIVTR-----SFTSLVFPNGVERKDAGFYVVCAKNRFGI  186 (305)
T ss_dssp             CEEEETTCCEEEEEEEEEESCCEEEEEESSSBCC-SSSSCEEEECS-----SEEEEEETTCCCSTTCEEEEEEEEETTEE
T ss_pred             cEEecCCCEEEEEEEECCCCCCEEEEEECCEECC-CCCcEEEEEcC-----CceEEEEecCCccCccEEEEEEEEeCCCc
Confidence            3556789999999999999999999999865543 33344332211     246788998 9999999999999999998


Q ss_pred             eEEEEEe
Q psy4613          89 VESSIRL   95 (96)
Q Consensus        89 ~~~~~~l   95 (96)
                      ....+.|
T Consensus       187 ~~~~~~l  193 (305)
T 2nzi_A          187 DQKTVEL  193 (305)
T ss_dssp             EEEEEEE
T ss_pred             eeeEEEE
Confidence            7666543

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*

Probab=99.28  E-value=4.4e-11  Score=61.10  Aligned_cols=71  Identities=21%  Similarity=0.285  Sum_probs=55.1

Q ss_pred             CeEEecCceeeecCCCcEEEEEEeeecccce-eEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEE
Q psy4613           2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSI-NYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKC   80 (96)
Q Consensus         2 p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~-~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c   80 (96)
                      |.+...+....+..|+.+.|.|.+.+.+.+. +.|++++..+...                ...|.|.+++..|.|.|.|
T Consensus         8 p~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~~v~W~k~g~~l~~~----------------~~~L~i~~v~~~D~G~Y~C   71 (204)
T 3sgj_C            8 AVVFLEPQWYRVLEKDSVTLKCQGAYSPEDQSTQWFHNESLISSQ----------------ASSYFIDAATVDDSGEYRC   71 (204)
T ss_dssp             CEEEEESCCSEEETTCCEEEEEECCSSSSCCCEEEEETTEEESCC----------------SSEEEESSCCGGGCEEEEE
T ss_pred             CeEEEcCCCeEEECCCCEEEEEcCCCCCCCcEEEEEECCEEcccC----------------ccEEEEecccccCCEEEEE
Confidence            5566556556788999999999999988775 9999986544211                1468999999999999999


Q ss_pred             EEecCCCc
Q psy4613          81 IAKNSLGE   88 (96)
Q Consensus        81 ~~~~~~g~   88 (96)
                      .+.+....
T Consensus        72 ~a~n~~~s   79 (204)
T 3sgj_C           72 QTQLSTLS   79 (204)
T ss_dssp             EETTSBCC
T ss_pred             EeCCCccc
Confidence            99875443

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R

Probab=99.27  E-value=3.7e-13  Score=79.28  Aligned_cols=86  Identities=22%  Similarity=0.354  Sum_probs=0.0

Q ss_pred             CeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEE
Q psy4613           2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCI   81 (96)
Q Consensus         2 p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~   81 (96)
                      |.+...+....+..|+.+.|.|.+.+.|.|.+.|++++..+.. ..++....       ....|.|.++...|.|.|.|.
T Consensus       667 P~~~~~~~~~~v~~g~~~~l~C~~~g~P~p~v~W~k~g~~l~~-~~~~~~~~-------~~~~L~I~~v~~~D~G~Y~C~  738 (772)
T 3v2a_R          667 PTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVE-DSGIVLKD-------GNRNLTIRRVRKEDEGLYTCQ  738 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CEeecCCCceEEeCCCCEEEEEEeCccCCCeEEEEECCeECcC-CCCeEEcC-------CCcEEEECcCCHHHCEEEEEE
Confidence            3444444456678899999999999999999999998765532 22222211       246799999999999999999


Q ss_pred             EecCCCceEEEEEe
Q psy4613          82 AKNSLGEVESSIRL   95 (96)
Q Consensus        82 ~~~~~g~~~~~~~l   95 (96)
                      +.|..|.....+.|
T Consensus       739 a~N~~G~~~~~~~l  752 (772)
T 3v2a_R          739 ACSVLGCAKVEAFF  752 (772)
T ss_dssp             --------------
T ss_pred             EEeCCcceeEEEEE
Confidence            99999987665543

>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1

Probab=99.27  E-value=2e-10  Score=59.93  Aligned_cols=77  Identities=17%  Similarity=0.258  Sum_probs=53.7

Q ss_pred             EecCceeeecCCCcEEEEEEeeecccceeEEee--ccceeE--e---------cccceEEEEeccccceEEEEEEEccCC
Q psy4613           5 HVPNQLVGAPIDTDVTLECYVEAYPKSINYWVR--DQGDMV--I---------SSERYEVESISRSIFDFKMRLTIKKIT   71 (96)
Q Consensus         5 ~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~--~~~~~~--~---------~~~~~~~~~~~~~~~~~~~~l~i~~~~   71 (96)
                      ...+..+.+..|+.+.|.|.+.+.+.+.+.|++  .+..+.  .         ...++....     ......|.|.+++
T Consensus       139 ~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~-----~~~~~~L~I~~v~  213 (247)
T 2ghw_B          139 TQSPATLSLSPGERATLSCRASQSVRSNLAWYQQKPGQAPRPLIYDASTRATGIPDRFSGSG-----SGTDFTLTISRLE  213 (247)
T ss_dssp             EEECSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEC-----SSSEEEEEECSCC
T ss_pred             EccCCEEEecCCCcEEEEEEeCCCccceEEEEEECCCCCcEEEEEEeccCCCccCCCEEEec-----CCCeEEEEECcCC
Confidence            334455668899999999999998888999998  332221  0         012332211     0124679999999


Q ss_pred             CCCCeeEEEEEecCC
Q psy4613          72 KYDLGSYKCIAKNSL   86 (96)
Q Consensus        72 ~~d~g~y~c~~~~~~   86 (96)
                      ..|.|.|.|.+.+..
T Consensus       214 ~~D~G~Y~C~a~~~~  228 (247)
T 2ghw_B          214 PEDFAVYYCQQRSNW  228 (247)
T ss_dssp             GGGCEEEEEEECSSS
T ss_pred             HHHCEEEEEEEccCC
Confidence            999999999998753

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}

Probab=99.27  E-value=3.1e-11  Score=71.83  Aligned_cols=85  Identities=25%  Similarity=0.371  Sum_probs=63.1

Q ss_pred             CeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEe------cccceEEEEeccccceEEEEEEEccCCCCCC
Q psy4613           2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVI------SSERYEVESISRSIFDFKMRLTIKKITKYDL   75 (96)
Q Consensus         2 p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~   75 (96)
                      |.+...+....+..|..+.|.|.+.+.|.|.+.|++++.....      ...+...         ....|.|.++...|.
T Consensus       715 P~~~~~~~~~~v~~G~~v~l~C~~~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~---------~~~~L~i~~v~~~d~  785 (816)
T 3dmk_A          715 PRWILEPTDKAFAQGSDAKVECKADGFPKPQVTWKKAVGDTPGEYKDLKKSDNIRV---------EEGTLHVDNIQKTNE  785 (816)
T ss_dssp             EEEEECCCCEEEETTCCEEEECEEEEESCCEEECCEECSSSTTCCBCCCCBTTEEE---------ETTEEEECSCCGGGC
T ss_pred             CceeeecccceecCCCcEEEEEEEecCCCCeEEEEecCCCCCccccccccCCCEEe---------cCCEEEECcCChhhC
Confidence            4444455566778899999999999999999999987543210      1111111         124699999999999


Q ss_pred             eeEEEEEecCCCceEEEEEe
Q psy4613          76 GSYKCIAKNSLGEVESSIRL   95 (96)
Q Consensus        76 g~y~c~~~~~~g~~~~~~~l   95 (96)
                      |.|.|.+.|..|.....+.+
T Consensus       786 G~Y~C~a~N~~G~~~~~v~~  805 (816)
T 3dmk_A          786 GYYLCEAINGIGSGLSAVIM  805 (816)
T ss_dssp             EEEEEEEECSSSSCEEEEEE
T ss_pred             eEEEEEEEeCCCCCcEEEEE
Confidence            99999999999988776654

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}

Probab=99.27  E-value=8.4e-12  Score=63.22  Aligned_cols=78  Identities=15%  Similarity=0.182  Sum_probs=54.7

Q ss_pred             CCeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEE
Q psy4613           1 HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKC   80 (96)
Q Consensus         1 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c   80 (96)
                      +|.+...+.. .+..|+.+.|.|.+.+.+. .+.|++++..+....   .  .  .........|.|.+++..|.|.|.|
T Consensus         5 ~P~i~~~p~~-~v~~G~~v~L~C~~~~~~~-~~~W~k~g~~~~~~~---~--~--~~~~~~~~~L~i~~v~~~D~G~Y~C   75 (196)
T 2d3v_A            5 KATLWAEPGS-VISRGNSVTIRCQGTLEAQ-EYRLVKEGSPEPWDT---Q--N--PLEPKNKARFSIPSMTEHHAGRYRC   75 (196)
T ss_dssp             BCEEEEESCS-EEETTCCEEEEEECCTTCC-EEEEEETTCSSCSEE---E--C--CCSSTTEEEEEESSCCGGGCEEEEE
T ss_pred             CCEEEeCCCC-cccCCCeEEEEEeCCCCCc-EEEEEECCCCCCccc---c--c--ccCCccccEEEeccCChhHCeEEEE
Confidence            3666655553 6889999999999887655 899999865442110   0  0  0000134679999999999999999


Q ss_pred             EEecCCC
Q psy4613          81 IAKNSLG   87 (96)
Q Consensus        81 ~~~~~~g   87 (96)
                      .+.+..|
T Consensus        76 ~a~n~~g   82 (196)
T 2d3v_A           76 YYYSPAG   82 (196)
T ss_dssp             EEEETTE
T ss_pred             EEeCCCC
Confidence            9988654

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A

Probab=99.27  E-value=8.9e-11  Score=59.49  Aligned_cols=72  Identities=14%  Similarity=0.107  Sum_probs=48.0

Q ss_pred             eeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCC
Q psy4613          11 VGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLG   87 (96)
Q Consensus        11 ~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g   87 (96)
                      ..+..|..+.|.|.+.+. .+.+.|++++..+...........  ..  .....|.|.+++..|.|.|.|.+.|..+
T Consensus       110 ~~v~~G~~v~L~C~~~~~-~~~v~W~k~g~~~~~~~~~~~~~~--~~--~~~~~L~i~~v~~~D~G~Y~C~a~n~~~  181 (198)
T 1ugn_A          110 PVVNSGGNVTLQCDSQVA-FDGFILCKEGEDEHPQCLNSQPHA--RG--SSRAIFSVGPVSPSRRWWYRCYAYDSNS  181 (198)
T ss_dssp             SEEETTCCEEEEEECSSC-CSEEEEEEC------CEEEC----------CCEEEEEECCCCTTSCEEEEEEEECTTS
T ss_pred             cccCCCCcEEEEEecCCC-CcEEEEEECCCccCCccccccccC--CC--cceeEEEecccCcccCeEEEEEEEeCCC
Confidence            457789999999999887 779999998765421111111100  00  0236799999999999999999999765

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}

Probab=99.26  E-value=1.2e-10  Score=59.67  Aligned_cols=72  Identities=11%  Similarity=0.159  Sum_probs=53.7

Q ss_pred             eeeecCCCcEEEEEEeee-cccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecC
Q psy4613          10 LVGAPIDTDVTLECYVEA-YPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNS   85 (96)
Q Consensus        10 ~~~~~~g~~~~l~c~~~~-~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~   85 (96)
                      ...+..|+.+.|.|.+.+ .|.|.+.|++++..+. ...++.+......   ....|.|.++...|.|.|.|.+.|.
T Consensus        11 ~~~v~eg~~v~l~c~~~~~~P~p~i~W~kng~~l~-~~~~~~~~~~~~~---g~~~L~I~~v~~~D~G~Y~C~a~Ng   83 (207)
T 3rbs_A           11 AVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIF-EGPKYKMHIDRNT---GIIEMFMEKLQDEDEGTYTFQLQDG   83 (207)
T ss_dssp             EEEECGGGCEEEEEECSCCCSCCEEEEEETTEEEC-SSSSCEEEECTTT---CEEEEEESCCCGGGCEEEEEEEEET
T ss_pred             ceEEEeCCeEEEEEEEecCCCCCEEEEEECCEECc-cCCCEEEEEeCCC---CEEEEEECCCChhhCEEEEEEEECC
Confidence            466888999999999864 6889999999976653 3444444321111   2357999999999999999999883

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}

Probab=99.26  E-value=1.7e-11  Score=63.03  Aligned_cols=72  Identities=18%  Similarity=0.212  Sum_probs=58.4

Q ss_pred             CeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEE
Q psy4613           2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCI   81 (96)
Q Consensus         2 p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~   81 (96)
                      +.+...+..+.+..|+.+.|.|.+.+.|.+.+.|++++..+...               ....|.|.++...|.|.|.|.
T Consensus        19 ~~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~---------------~~~~L~i~~v~~~d~G~Y~C~   83 (218)
T 3k0w_A           19 SKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNG---------------NTSELIFNAVHVKDAGFYVCR   83 (218)
T ss_dssp             CCEEECCCCEEEETTSBEEEECEETTTTSSEEEEEETTEECTTC---------------CSSEEEETTCCGGGCEEEEEE
T ss_pred             CEEEECCCCeEEeCCCcEEEEeeecCCCCCEEEEEECCEECCCC---------------CCCEEEEccCChhhCeEeEEE
Confidence            45666777788999999999999999888999999986544211               124689999999999999999


Q ss_pred             EecCCCc
Q psy4613          82 AKNSLGE   88 (96)
Q Consensus        82 ~~~~~g~   88 (96)
                      +.+..|.
T Consensus        84 ~~n~~~~   90 (218)
T 3k0w_A           84 VNNNFTF   90 (218)
T ss_dssp             EECTTCC
T ss_pred             EEcCCCC
Confidence            9998664

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}

Probab=99.26  E-value=6e-12  Score=68.22  Aligned_cols=87  Identities=17%  Similarity=0.139  Sum_probs=64.1

Q ss_pred             CeEEecCceeeecCCCcEEEEEEee-------ecccceeEEeeccceeEeccc-ceEEEEeccccceEEEEEEEccCCCC
Q psy4613           2 PVIHVPNQLVGAPIDTDVTLECYVE-------AYPKSINYWVRDQGDMVISSE-RYEVESISRSIFDFKMRLTIKKITKY   73 (96)
Q Consensus         2 p~~~~~~~~~~~~~g~~~~l~c~~~-------~~~~~~~~w~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~i~~~~~~   73 (96)
                      |.+...+..+.+..|+.+.|.|.+.       +.+.+.+.|++++........ ...+..       ....|.|.+++..
T Consensus        19 p~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~-------~~~~L~i~~v~~~   91 (339)
T 3o4o_C           19 RFRGRHYKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEEETRMWA-------QDGALWLLPALQE   91 (339)
T ss_dssp             EEEEECSCCEEEETTBCCEEECTTSCSSCCSTTSSCCBCCCEESSCCSCCSCCSSSCEEE-------ETTEEEESSBCTT
T ss_pred             HhhCcCceEEEEECCccEEEEeccccccccccCCCCceEEEEECCCCcccCccccccEEe-------eCCeEEECCCCcc
Confidence            5566667778899999999999997       778889999998765322211 222211       2257999999999


Q ss_pred             CCeeEEEEEecCCCceEEEEEe
Q psy4613          74 DLGSYKCIAKNSLGEVESSIRL   95 (96)
Q Consensus        74 d~g~y~c~~~~~~g~~~~~~~l   95 (96)
                      |.|.|.|.+.+..|.....+.|
T Consensus        92 D~G~Y~C~~~n~~g~~~~~~~l  113 (339)
T 3o4o_C           92 DSGTYVCTTRNASYCDKMSIEL  113 (339)
T ss_dssp             CCEEEECCEEETTEEEEEEEEE
T ss_pred             cCEEEEEEEECCcceEEEEEEE
Confidence            9999999999988765555443

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}

Probab=99.26  E-value=9.8e-11  Score=63.29  Aligned_cols=77  Identities=10%  Similarity=0.167  Sum_probs=46.4

Q ss_pred             ecCCCcEEEEEEeeecc-cc-eeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCceE
Q psy4613          13 APIDTDVTLECYVEAYP-KS-INYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVE   90 (96)
Q Consensus        13 ~~~g~~~~l~c~~~~~~-~~-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~~   90 (96)
                      +..|..+.|.|.+.+.+ .+ .+.|++++..+... ............+.....|.|..+...|.|.|.|.+.|..+...
T Consensus       232 ~~~G~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~-~~~~~~~~~~g~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~~~~~  310 (327)
T 2wng_A          232 VRAENQVNVTCQVRKFYPQRLQLTWLENGNVSRTE-TASTVTENKDGTYNWMSWLLVNVSAHRDDVKLTCQVEHDGQPAV  310 (327)
T ss_dssp             CSSTTCCEEEEEEEEEBSSCEEEEEEETTEEEEEE-ECCSCEECTTSCEEEEEEEEC-------CCEEEEEEEETTCCCE
T ss_pred             cCCCCcEEEEEEEccccCCCcEEEEEECCeEccCc-ccCceEECCCCcEEEEEEEEEccccccCCCEEEEEEEeCCCCCc
Confidence            56899999999999854 44 79999987665321 11111111112222346788888999999999999999988643

>1dlf_L Anti-dansyl immunoglobulin IGG2A(S); FV fragment; 1.45A {Mus musculus} SCOP: b.1.1.1 PDB: 1wz1_L* 2dlf_L 1maj_A 1mak_A 1ktr_L 2cju_L* 2uud_K* 1dsf_L 3nn8_B 1n4x_L 1bfv_L* 1cfv_L* 2bfv_L* 1wt5_C

Probab=99.25  E-value=2.2e-10  Score=53.48  Aligned_cols=78  Identities=15%  Similarity=0.339  Sum_probs=53.7

Q ss_pred             eEEecCceeeecCCCcEEEEEEeeecc-----cceeEEeeccc----eeEe-c--------ccceEEEEeccccceEEEE
Q psy4613           3 VIHVPNQLVGAPIDTDVTLECYVEAYP-----KSINYWVRDQG----DMVI-S--------SERYEVESISRSIFDFKMR   64 (96)
Q Consensus         3 ~~~~~~~~~~~~~g~~~~l~c~~~~~~-----~~~~~w~~~~~----~~~~-~--------~~~~~~~~~~~~~~~~~~~   64 (96)
                      .+...+..+.+..|++++|.|.+.+.+     .+.+.|++...    ..+. .        ..++.....     .....
T Consensus         3 ~v~q~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~-----~~~~~   77 (113)
T 1dlf_L            3 VMTQTPLSLPVSLGNQASISCRSSQSLVHSNGNTYLHWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGSGS-----GTDFT   77 (113)
T ss_dssp             CEEEECSEEEECTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEE-----TTEEE
T ss_pred             cEEEeCCEEEEcCCCCEEEEEEccccccccCCCceEEEEEECCCCCCeEEEEecCccCCCCCCCEEEEcc-----CCEEE
Confidence            345566778899999999999987655     36899987531    1111 1        123322210     02357


Q ss_pred             EEEccCCCCCCeeEEEEEecC
Q psy4613          65 LTIKKITKYDLGSYKCIAKNS   85 (96)
Q Consensus        65 l~i~~~~~~d~g~y~c~~~~~   85 (96)
                      |.|.+++..|+|.|.|.+.+.
T Consensus        78 L~I~~v~~~DsG~Y~C~~~~~   98 (113)
T 1dlf_L           78 LKISRVEAEDLGVYFCSQSTH   98 (113)
T ss_dssp             EEECSCCGGGCEEEEEEECSS
T ss_pred             EEECCCChHHCEEEEEEEecC
Confidence            999999999999999999875

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}

Probab=99.25  E-value=2.5e-11  Score=63.21  Aligned_cols=87  Identities=18%  Similarity=0.157  Sum_probs=55.7

Q ss_pred             ceeeecCCCcEEEEEEeeecccceeEEeeccceeEeccc-ceEEE-Ee---------cc-ccce---EEEEEEEccCCCC
Q psy4613           9 QLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSE-RYEVE-SI---------SR-SIFD---FKMRLTIKKITKY   73 (96)
Q Consensus         9 ~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~-~~~~~-~~---------~~-~~~~---~~~~l~i~~~~~~   73 (96)
                      ....+..|..+.|.|.+.+.|.|.+.|++++..+..... ..... ..         .. ....   ....|.|.+++..
T Consensus       144 ~~~~v~~g~~v~L~C~~~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~  223 (250)
T 2fbo_J          144 EVVQVDEGNDITMTCPCTDCANANVTWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAGRASFSGARNLVIRAAKIT  223 (250)
T ss_dssp             SEEECCTTCCEEECCCEESCTTCEEEEEEEEECSSCSSSCEEEEEEEECTTSCEEECTTTTTSEEEETTTEEEECSCCGG
T ss_pred             ceEEecCCCcEEEEEEecCCCCCeeEEEeCCCcccccccCcceeEeccCCCCccccCceEecccccCCccEEEEecCCcc
Confidence            345566799999999999989999999998654321100 00000 00         00 0000   1147999999999


Q ss_pred             CCeeEEEEEecCCC---ceEEEEEe
Q psy4613          74 DLGSYKCIAKNSLG---EVESSIRL   95 (96)
Q Consensus        74 d~g~y~c~~~~~~g---~~~~~~~l   95 (96)
                      |.|.|.|.+.|..|   .....+.|
T Consensus       224 D~G~Y~C~a~N~~g~~g~~~~~~~l  248 (250)
T 2fbo_J          224 DAGRVWCELATGQGELDADRSSTIL  248 (250)
T ss_dssp             GCEEEEEEEESSSSGGGEEEEEEEE
T ss_pred             cCEEEEEEecCCccccCccceeEEE
Confidence            99999999999555   44444443

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}

Probab=99.25  E-value=4.8e-11  Score=68.55  Aligned_cols=76  Identities=13%  Similarity=0.074  Sum_probs=59.2

Q ss_pred             eeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCce
Q psy4613          10 LVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEV   89 (96)
Q Consensus        10 ~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~   89 (96)
                      ...+..|+.+.|.|.+.+.|.|.+.|++++..+... .+...         ....|.|.++...|.|.|.|.+.|..|..
T Consensus       335 ~~~v~~G~~v~L~C~~~g~P~p~i~W~k~g~~l~~~-~~~~~---------~~~~L~I~~v~~~D~G~YtC~A~N~~g~~  404 (527)
T 3qs9_E          335 DYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCE-QKGLD---------NGYSISKFCNHKHQPGEYIFHAENDDAQF  404 (527)
T ss_dssp             EECCCTTCCCCEEEEEEEESCCEEEEEETTEEEECB-CCBCS---------SSSEEEEECCCTTCCSCEEEEEEETTEEE
T ss_pred             cEEEcCCCeEEEEEEEEecCCCEEEEEECCEECcCC-ccccc---------CCcEEEEecCCcccCEEEEEEEEeCCCcE
Confidence            356778999999999999999999999987655322 21110         12468899999999999999999999987


Q ss_pred             EEEEEe
Q psy4613          90 ESSIRL   95 (96)
Q Consensus        90 ~~~~~l   95 (96)
                      ...+.|
T Consensus       405 ~~~~~L  410 (527)
T 3qs9_E          405 TKMFTL  410 (527)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            766655

>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A

Probab=99.25  E-value=1.3e-10  Score=60.92  Aligned_cols=79  Identities=16%  Similarity=0.308  Sum_probs=54.1

Q ss_pred             eEEecCceeeecCCCcEEEEEEeeecccc----eeEEeecc--ceeE--ec---------ccceEEEEeccccceEEEEE
Q psy4613           3 VIHVPNQLVGAPIDTDVTLECYVEAYPKS----INYWVRDQ--GDMV--IS---------SERYEVESISRSIFDFKMRL   65 (96)
Q Consensus         3 ~~~~~~~~~~~~~g~~~~l~c~~~~~~~~----~~~w~~~~--~~~~--~~---------~~~~~~~~~~~~~~~~~~~l   65 (96)
                      .+...+....+..|+++.|.|.+.+.+.+    .+.|++..  ....  ..         ..++.....     .....|
T Consensus       135 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-----~~~~~L  209 (253)
T 3uzq_A          135 VMTQTPASLAVSLGQRATISCRASENVDRYGNSFMHWYQQKAGQPPKLLIYRASNLESGIPARFSGSGS-----RTDFTL  209 (253)
T ss_dssp             CEEEECSEEEECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEE-----TTEEEE
T ss_pred             eEECcCCeEEEeCCCCEEEEEEecCccccCCCcEEEEEEECCCCCCEEEEEEccccCCccCCceEEeCC-----CCEEEE
Confidence            34445556778899999999999987776    89999842  1111  00         122222110     024579


Q ss_pred             EEccCCCCCCeeEEEEEecCC
Q psy4613          66 TIKKITKYDLGSYKCIAKNSL   86 (96)
Q Consensus        66 ~i~~~~~~d~g~y~c~~~~~~   86 (96)
                      .|.+++..|+|.|.|.+.+..
T Consensus       210 ~I~~v~~~DsG~Y~C~~~n~~  230 (253)
T 3uzq_A          210 TINPVEADDVATYFCQRSNEV  230 (253)
T ss_dssp             EESSCCGGGCEEEEEEECSSS
T ss_pred             EECCCCHHHCEEEEEEEccCC
Confidence            999999999999999998854

>1xau_A B- and T-lymphocyte attenuator; IG domain, beta sandwich, structural genomics, PSI, protein structure initiative; 1.80A {Mus musculus} SCOP: b.1.1.4

Probab=99.24  E-value=3.9e-10  Score=52.07  Aligned_cols=80  Identities=21%  Similarity=0.261  Sum_probs=55.4

Q ss_pred             ceeeecCCCcEEEEEEeee-cccceeEEeeccceeEec---ccc-eEEEEeccccceEEEEEEEccCCCCCCeeEEEEEe
Q psy4613           9 QLVGAPIDTDVTLECYVEA-YPKSINYWVRDQGDMVIS---SER-YEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAK   83 (96)
Q Consensus         9 ~~~~~~~g~~~~l~c~~~~-~~~~~~~w~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~   83 (96)
                      ....+..|..+.|.|.+.+ .+.|.+.|.+.+......   ... +.......+  .....|.+..+...|.|.|.|.+.
T Consensus        22 S~~tv~~G~~~~LeCpv~yc~~rPnVtWcK~~~~~c~~L~~~~q~~~~w~e~~n--~s~fiL~f~~V~~sDsG~YrCsAn   99 (122)
T 1xau_A           22 SKHSAWTGELFKIECPVKYCVHRPNVTWCKHNGTIWVPLEVGPQLYTSWEENRS--VPVFVLHFKPIHLSDNGSYSCSTN   99 (122)
T ss_dssp             EEEEECTTSCEEEEEEEECSSSCCCEEEEEECSSSEEECCCBTTEEEEEECSSS--SCEEEEEETTCCGGGCEEEEEEEE
T ss_pred             ccEEEecCCeEEEEeEecCCCCCCcEEEEecCCeeccccccceeeecceeccCC--ceeEEEEEeeEEEcCCccEEEEee
Confidence            4456889999999999976 579999999875432211   111 111111111  134689999999999999999999


Q ss_pred             cCCCceE
Q psy4613          84 NSLGEVE   90 (96)
Q Consensus        84 ~~~g~~~   90 (96)
                      +..|...
T Consensus       100 ~~~g~ie  106 (122)
T 1xau_A          100 FNSQVIN  106 (122)
T ss_dssp             ETTEEEE
T ss_pred             CCCCcee
Confidence            9877543

>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*

Probab=99.24  E-value=2.8e-10  Score=59.44  Aligned_cols=80  Identities=21%  Similarity=0.407  Sum_probs=57.0

Q ss_pred             eEEecCceeeecCCCcEEEEEEeeecccceeEEeeccc----eeEe---------cccceEEEEeccccceEEEEEEEcc
Q psy4613           3 VIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQG----DMVI---------SSERYEVESISRSIFDFKMRLTIKK   69 (96)
Q Consensus         3 ~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~----~~~~---------~~~~~~~~~~~~~~~~~~~~l~i~~   69 (96)
                      .+..++..+.+..|+.+.|.|.+.+.+.+.+.|++...    ..+.         ...++.....     .....|.|.+
T Consensus         6 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~i~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~-----~~~~~L~I~~   80 (250)
T 3esu_F            6 VLIQSTSSLSASLGDRVTISCRASQDIRNYLNWYQQKPDGTVKLLIYYTSRLQSGVPSRFSGSGS-----GTDYSLTISN   80 (250)
T ss_dssp             CEECSCSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEE-----TTEEEEEESS
T ss_pred             eEEecCCEEEeeCCCcEEEEEEecccCCceEEEEEECCCCCCEEEEEEeCCCCCCCCCCEEEeCC-----CCEEEEEEcc
Confidence            45566777889999999999999998999999998531    1110         0123322110     0235799999


Q ss_pred             CCCCCCeeEEEEEecCCC
Q psy4613          70 ITKYDLGSYKCIAKNSLG   87 (96)
Q Consensus        70 ~~~~d~g~y~c~~~~~~g   87 (96)
                      ++..|.|.|.|.+.+..+
T Consensus        81 v~~~D~G~Y~C~~~n~~~   98 (250)
T 3esu_F           81 LEQEDIGTYFCQQGNTLP   98 (250)
T ss_dssp             CCGGGCEEEEEEECSSSS
T ss_pred             CChhhCEEEEEEEeeCCC
Confidence            999999999999988644

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A

Probab=99.24  E-value=4.1e-10  Score=57.74  Aligned_cols=81  Identities=17%  Similarity=0.335  Sum_probs=51.1

Q ss_pred             eecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCceEE
Q psy4613          12 GAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVES   91 (96)
Q Consensus        12 ~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~~~   91 (96)
                      .+..|..+.|.|.+.+.|.|.+.|+++++..................+.....+   .+...|.|.|.|.+.|..|....
T Consensus       127 ~~~~g~~v~L~C~~~g~P~p~i~W~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l---~v~~~d~g~Y~C~a~n~~g~~~~  203 (222)
T 3sbw_C          127 VDPVTSEHELTCQAEGYPKAEVIWTSSDHQVLSGKTTTTNSKREEKLFNVTSTL---RINTTTNEIFYCTFRRLDPEENH  203 (222)
T ss_dssp             EETTTTEEEEEEEEEEBSCCEEEEEETTCCEECCEEEEEECC----CEEEEEEE---EEECCTTCEEEEEEEETTTTEEE
T ss_pred             eecCCCcEEEEEEecCCCCCeEEEEECCCceecCccceEEEcCCCCCEEEEEEE---EEeccCCcEEEEEEEeCccceee
Confidence            467899999999999999999999998444332111111111111111112222   33467899999999999998776


Q ss_pred             EEEe
Q psy4613          92 SIRL   95 (96)
Q Consensus        92 ~~~l   95 (96)
                      .+.|
T Consensus       204 ~~~l  207 (222)
T 3sbw_C          204 TAEL  207 (222)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            6654

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}

Probab=99.24  E-value=1.1e-10  Score=61.14  Aligned_cols=74  Identities=24%  Similarity=0.281  Sum_probs=59.9

Q ss_pred             CCeEEecCceeeecCCCcEEEEEEeeecccc-eeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEE
Q psy4613           1 HPVIHVPNQLVGAPIDTDVTLECYVEAYPKS-INYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYK   79 (96)
Q Consensus         1 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~   79 (96)
                      +|.+...+....+..|+.+.|.|.+.+.+.+ .+.|++++..+...                ...|.|.+++..|.|.|.
T Consensus         1 kP~i~~~p~~~~v~~G~~v~l~C~~~~~~~~~~~~W~~~g~~~~~~----------------~~~l~i~~~~~~d~G~Y~   64 (262)
T 3rjd_A            1 KAVITLQPPWVSVFQEETVTLHCEVLHLPGSSSTQWFLNGTATQTS----------------TPSYRITSASVNDSGEYR   64 (262)
T ss_dssp             CCEEEESSCCSEEETTCCEEEEEECSSCCCTTCEEEEETTEECSCC----------------SSEEEESSCCGGGCEEEE
T ss_pred             CCeEecCCCcEEeeCCCeEEEEEECCCCCCCceEEEEECCEEeecc----------------CCeEEEecCCcccCeEEE
Confidence            5788888888889999999999999888877 89999986544211                145889999999999999


Q ss_pred             EEEecCCCceE
Q psy4613          80 CIAKNSLGEVE   90 (96)
Q Consensus        80 c~~~~~~g~~~   90 (96)
                      |.+.+..+...
T Consensus        65 C~~~~~~~s~~   75 (262)
T 3rjd_A           65 CQRGLSGRSDP   75 (262)
T ss_dssp             EEESSSCCCCC
T ss_pred             EEEecCCcccc
Confidence            99988766543

>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A

Probab=99.24  E-value=2.6e-10  Score=59.12  Aligned_cols=78  Identities=18%  Similarity=0.204  Sum_probs=54.1

Q ss_pred             EecCceeeecCCCcEEEEEEeeecccceeEEeeccc----eeEe---------cccceEEEEeccccceEEEEEEEccCC
Q psy4613           5 HVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQG----DMVI---------SSERYEVESISRSIFDFKMRLTIKKIT   71 (96)
Q Consensus         5 ~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~----~~~~---------~~~~~~~~~~~~~~~~~~~~l~i~~~~   71 (96)
                      ...+..+.+..|+.+.|.|.+.+.+.+.+.|+++..    ..+.         ...++......   ......|.|.+++
T Consensus       131 ~~~p~~~~v~~G~~v~L~C~~~~~p~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~---~~~~~~L~I~~v~  207 (238)
T 2p1y_A          131 RQSPQSLTVWEGETAILNCSYENSAFDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNK---REKKLSLHIADSQ  207 (238)
T ss_dssp             EEECSEEEEETTSCEEEEEECCCTTCCEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEET---TTTEEEEEETTCC
T ss_pred             EccCceEEEeCCCeEEEEEEEecCCCCcEEEEEECCCCCCEEEEEEccCCCcccCCceEEEecC---CCCeEEEEEcCCC
Confidence            334455678899999999999998889999998631    1110         11223222100   0023679999999


Q ss_pred             CCCCeeEEEEEecC
Q psy4613          72 KYDLGSYKCIAKNS   85 (96)
Q Consensus        72 ~~d~g~y~c~~~~~   85 (96)
                      ..|+|.|.|.+.|.
T Consensus       208 ~~D~G~Y~C~a~n~  221 (238)
T 2p1y_A          208 PGDSATYFCAAIDT  221 (238)
T ss_dssp             GGGCEEEEEEEEET
T ss_pred             HHHCEEEEEEEeeC
Confidence            99999999999987

>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens}

Probab=99.24  E-value=3.9e-10  Score=59.20  Aligned_cols=80  Identities=16%  Similarity=0.247  Sum_probs=54.6

Q ss_pred             eEEecCceeeecCCCcEEEEEEeeeccc-ceeEEeecc--ceeE--e---------cccceEEEEeccccceEEEEEEEc
Q psy4613           3 VIHVPNQLVGAPIDTDVTLECYVEAYPK-SINYWVRDQ--GDMV--I---------SSERYEVESISRSIFDFKMRLTIK   68 (96)
Q Consensus         3 ~~~~~~~~~~~~~g~~~~l~c~~~~~~~-~~~~w~~~~--~~~~--~---------~~~~~~~~~~~~~~~~~~~~l~i~   68 (96)
                      .+...+....+..|+.++|.|.+.+.+. +.+.|++..  ....  .         ...++......     ....|.|.
T Consensus       151 ~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~-----~~~~L~I~  225 (256)
T 3juy_B          151 VLTQAPGTLSLSPGERATFSCRSSHSIRSRRVAWYQHKPGQAPRLVIHGVSNRASGISDRFSGSGSG-----TDFTLTIT  225 (256)
T ss_dssp             CEEEECSEEEECTTSCEEEEEEESSCCTTCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEET-----TEEEEEES
T ss_pred             EEEecCCeEEEeCCCCEEEEEEECCCcCCeeEEEEEECCCCCcEEEEEecCccCCccCCcEEEEccC-----CEEEEEEC
Confidence            3444556677889999999999988775 899998731  1111  0         11233222111     24569999


Q ss_pred             cCCCCCCeeEEEEEecCCC
Q psy4613          69 KITKYDLGSYKCIAKNSLG   87 (96)
Q Consensus        69 ~~~~~d~g~y~c~~~~~~g   87 (96)
                      +++..|+|.|.|.+.+...
T Consensus       226 ~v~~~DsG~Y~C~~~~~~~  244 (256)
T 3juy_B          226 RVEPEDFALYYCQVYGASS  244 (256)
T ss_dssp             SCCGGGCSEEEEEECCSSC
T ss_pred             CCCHhHCEEEEEEEeeCCC
Confidence            9999999999999988543

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}

Probab=99.24  E-value=5.6e-11  Score=65.61  Aligned_cols=81  Identities=27%  Similarity=0.437  Sum_probs=60.2

Q ss_pred             cCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCC
Q psy4613           7 PNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSL   86 (96)
Q Consensus         7 ~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~   86 (96)
                      .+....+..|+.+.|.|.+.+.|.+.+.|++++..+.....+....        ....|.|.++...|.|.|.|.+.|..
T Consensus       227 ~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~--------~~~~L~i~~~~~~d~G~Y~C~a~n~~  298 (403)
T 3laf_A          227 RPSNVIAIEGKDAVLECCVSGYPPPSFTWLRGEEVIQLRSKKYSLL--------GGSNLLISNVTDDDSGTYTCVVTYKN  298 (403)
T ss_dssp             CCCCEEEETTSCEEECCEEEEESCCEEEEEETTEECCCSSSSEEEE--------TTTEEEECSCCGGGCEEEEEEEEETT
T ss_pred             CCCceEecCCCcEEEEEEcCCCCCCeEEEEECCeeccCCCceEEEC--------CccEEEEeCCCHHHCEEEEEEEEcCC
Confidence            3444567789999999999999999999999865543222232221        12468999999999999999999988


Q ss_pred             CceEEEEEe
Q psy4613          87 GEVESSIRL   95 (96)
Q Consensus        87 g~~~~~~~l   95 (96)
                      |.......|
T Consensus       299 g~~~~~~~l  307 (403)
T 3laf_A          299 ENISASAEL  307 (403)
T ss_dssp             EEEEEEEEE
T ss_pred             CceEEEEEE
Confidence            876555443

>1eaj_A Coxsackie virus and adenovirus receptor; virus/viral protein receptor, immunoglobulin V domain fold, symmetric dimer; 1.35A {Homo sapiens} SCOP: b.1.1.1 PDB: 1f5w_A 2j12_B 2j1k_A 2wbw_B* 2w9l_A* 1rsf_A 1jew_R 1kac_B 1p69_B 1p6a_B

Probab=99.24  E-value=2.5e-11  Score=57.25  Aligned_cols=90  Identities=20%  Similarity=0.395  Sum_probs=57.3

Q ss_pred             EEecCceeeecCCCcEEEEEEeeeccc----ceeEEeeccce------eE-e-c------------ccceEEEEeccccc
Q psy4613           4 IHVPNQLVGAPIDTDVTLECYVEAYPK----SINYWVRDQGD------MV-I-S------------SERYEVESISRSIF   59 (96)
Q Consensus         4 ~~~~~~~~~~~~g~~~~l~c~~~~~~~----~~~~w~~~~~~------~~-~-~------------~~~~~~~~~~~~~~   59 (96)
                      +..++..+.+..|+++.|.|.+.+.+.    ..+.|++.+..      .. . .            ..+..+...  ...
T Consensus         8 v~~~~~~v~~~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~--~~~   85 (126)
T 1eaj_A            8 ITTPEEMIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPDLKGRVHFTSN--DLK   85 (126)
T ss_dssp             ESSSEEEEEEETTSCEEECCBEECCTTCCSCEEEEEEEEETTSSCCSEEEEEEETTEEECTTSSTTTTTEEECCS--CGG
T ss_pred             EECCCceEEEEeCCCEEEEEEEecCCCCCCceEEEEEEeCCCcCCCceEEEEEeCCeeccccCccccCeeEEEcc--ccc
Confidence            334556678899999999999887554    35899886421      11 1 0            011111110  000


Q ss_pred             eEEEEEEEccCCCCCCeeEEEEEecCCCceEEEEEe
Q psy4613          60 DFKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL   95 (96)
Q Consensus        60 ~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~~~~~~l   95 (96)
                      .....|.|.+++..|+|.|.|.+.+..+.....+.|
T Consensus        86 ~~~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~L  121 (126)
T 1eaj_A           86 SGDASINVTNLQLSDIGTYQCKVKKAPGVANKKIHL  121 (126)
T ss_dssp             GTBCCEEECSCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred             CCeEEEEECcCChHHCeEEEEEEEcCCccCCcEEEE
Confidence            012569999999999999999999987765555543

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}

Probab=99.23  E-value=2.6e-11  Score=65.69  Aligned_cols=65  Identities=18%  Similarity=0.347  Sum_probs=51.5

Q ss_pred             eecCCCcEEEEEEeeecc-cceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecC
Q psy4613          12 GAPIDTDVTLECYVEAYP-KSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNS   85 (96)
Q Consensus        12 ~~~~g~~~~l~c~~~~~~-~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~   85 (96)
                      .+..|+.+.|.|.+.+.| .+.+.|++++..+.....++...         ...|.|.++...|.|.|.|.+.|.
T Consensus       139 ~~~~G~~v~L~C~~~g~p~~~~i~W~k~~~~l~~~~~~~~~~---------~~~L~I~~v~~~D~G~Y~C~a~n~  204 (329)
T 3oq3_B          139 GTHDKYGIDLYCGILYAKHYNNITWYKNNQELIIDGTKYSQS---------GQNLIIHNPELEDSGRYDCYVHYD  204 (329)
T ss_dssp             TSSTTTCEEEECCCCSCCCCCEEEEEETTEECCCSSSSEEEE---------TTEEEECSCCGGGCEEEEEEEEEC
T ss_pred             EEeCCCcEEEEeccCCCCCCceEEEEECCccCCCCCceEecC---------CCEEEEeecChhhCEEEEEEEEec
Confidence            356699999999999988 89999999876654333343322         257899999999999999999986

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A

Probab=99.23  E-value=6.9e-11  Score=60.97  Aligned_cols=82  Identities=18%  Similarity=0.255  Sum_probs=50.3

Q ss_pred             eeeecCCCcEEEEEEeee-cccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCc
Q psy4613          10 LVGAPIDTDVTLECYVEA-YPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGE   88 (96)
Q Consensus        10 ~~~~~~g~~~~l~c~~~~-~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~   88 (96)
                      ...+..|..+.+.|.+.+ .|.|.+.|+++++........ .........   ...+.+..++..|.|.|.|.+.|..|.
T Consensus       127 ~~~~~~g~~v~l~c~~~g~~P~p~i~W~k~~~~~~~~~~~-~~~~~~~g~---~~v~s~l~v~~~d~G~YtC~a~N~~g~  202 (226)
T 4f80_A          127 DVKGYKDGGIHLECRSTGWYPQPQIQWSNNKGENIPTVEA-PVVADGVGL---YAVAASVIMRGSSGEGVSCTIRSSLLG  202 (226)
T ss_dssp             EEEEEETTEEEEEEEEEEEBSCCEEEEECTTSCBCCCEEC-CCEECTTSC---EEEEEEEEECC----CEEEEEEETTTT
T ss_pred             eeeeccCCceeeEEEeccCCCCCEEEEEECCceEcCCCce-EEEECCCCc---EEEEEEEEechhcCcEEEEEEEeCCCC
Confidence            345677999999999988 589999999865544321111 111111111   122334456778999999999999998


Q ss_pred             eEEEEEe
Q psy4613          89 VESSIRL   95 (96)
Q Consensus        89 ~~~~~~l   95 (96)
                      ....+.|
T Consensus       203 ~~~~~~v  209 (226)
T 4f80_A          203 LEKTASI  209 (226)
T ss_dssp             EEEEEEE
T ss_pred             eEEEEEE
Confidence            7777655

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G

Probab=99.23  E-value=3.4e-11  Score=61.11  Aligned_cols=77  Identities=26%  Similarity=0.477  Sum_probs=58.1

Q ss_pred             CeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEe-----------cccceEEEEeccccceEEEEEEEccC
Q psy4613           2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVI-----------SSERYEVESISRSIFDFKMRLTIKKI   70 (96)
Q Consensus         2 p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~l~i~~~   70 (96)
                      +.+..++..+.+..|+.+.|.|.+.+.+.+.+.|++++..+..           ...+...         ....|.|.++
T Consensus         5 ~~i~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~---------~~~~L~i~~~   75 (209)
T 1nbq_A            5 VTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTF---------LPTGITFKSV   75 (209)
T ss_dssp             CEEECSCSBCCEETTCCCEEECEEESCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEE---------ETTEEECSCC
T ss_pred             EEEEcCCCceEEEcCCCEEEEEEEeCCCCcEEEEEEcCCceeEEEEecCccCccccCceEe---------eccEEEEeeC
Confidence            4556677778889999999999999888899999987654211           0112221         1256899999


Q ss_pred             CCCCCeeEEEEEecCCC
Q psy4613          71 TKYDLGSYKCIAKNSLG   87 (96)
Q Consensus        71 ~~~d~g~y~c~~~~~~g   87 (96)
                      +..|.|.|.|.+.+..|
T Consensus        76 ~~~d~G~Y~C~~~~~~g   92 (209)
T 1nbq_A           76 TREDTGTYTCMVSEEGG   92 (209)
T ss_dssp             CTTSCSEEEEEEEETTS
T ss_pred             CHHHCcEEEEEEecCCC
Confidence            99999999999998755

>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L

Probab=99.23  E-value=3.9e-10  Score=59.88  Aligned_cols=80  Identities=16%  Similarity=0.315  Sum_probs=57.0

Q ss_pred             eEEecCceeeecCCCcEEEEEEeeecccceeEEeeccc----eeEec---------ccceEEEEeccccceEEEEEEEcc
Q psy4613           3 VIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQG----DMVIS---------SERYEVESISRSIFDFKMRLTIKK   69 (96)
Q Consensus         3 ~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~----~~~~~---------~~~~~~~~~~~~~~~~~~~l~i~~   69 (96)
                      .+...+..+.+..|+.+.|.|.+.+.+.+.+.|+++..    .....         ..++.....     .....|.|.+
T Consensus        14 ~v~~~p~~~~v~~G~~v~L~C~~~~~p~~~i~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-----~~~~~L~I~~   88 (276)
T 3auv_A           14 QMTQSPSSLSASVGDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGS-----GTDFTLTISS   88 (276)
T ss_dssp             CEEEECSEEECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEE-----TTEEEEEESS
T ss_pred             eEEeCCCeEEEcCCCCEEEEeEcCCCCCCcEEEEEECCCCCCEEEEEEcCccCCCCCCCEEEecc-----CCeEEEEEcc
Confidence            35556677789999999999999988888999998532    11110         123332210     0235799999


Q ss_pred             CCCCCCeeEEEEEecCCC
Q psy4613          70 ITKYDLGSYKCIAKNSLG   87 (96)
Q Consensus        70 ~~~~d~g~y~c~~~~~~g   87 (96)
                      ++..|.|.|.|.+.+..+
T Consensus        89 v~~~DsG~Y~C~~~n~~~  106 (276)
T 3auv_A           89 LQPEDFATYYCQQHYTTP  106 (276)
T ss_dssp             CCGGGCEEEEEEECSSSS
T ss_pred             CChhhCEEEEEEEecCCc
Confidence            999999999999988643

>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ...

Probab=99.23  E-value=4.7e-11  Score=60.96  Aligned_cols=79  Identities=14%  Similarity=0.161  Sum_probs=51.3

Q ss_pred             cCCCcEEEEEEeeecccc--eeEEeeccceeEecccce-EEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCceE
Q psy4613          14 PIDTDVTLECYVEAYPKS--INYWVRDQGDMVISSERY-EVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVE   90 (96)
Q Consensus        14 ~~g~~~~l~c~~~~~~~~--~~~w~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~~   90 (96)
                      ..|..+.|.|.+.+.+++  .+.|++++..+. ..... .........+...+.|.|......|.|.|.|.+.+......
T Consensus       128 ~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~l~-~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~  206 (212)
T 1q0x_L          128 LSTAKATLVCTITDFYPGVVTVDWKVDGTPVT-AGMETTQPSKQSNNKYMASSYLTLTARAWERHSSYSCQVTHEGHSSN  206 (212)
T ss_dssp             HTTTEEEEEEEEEEEBSSCCEEEEEETTEEEC-TTEEECCCEECTTSCEEEEEEEEEEHHHHTTCCEEEEEEEETTEEEE
T ss_pred             ccCCcEEEEEEEEEEeCCCeEEEEEECCEeCC-CCeecCCceeCCCCCEEEEEEEEEcHHHccCCCcEEEEEEeCCccee
Confidence            358899999999885443  899999865542 11110 01111111222446788888888999999999999866554


Q ss_pred             EEE
Q psy4613          91 SSI   93 (96)
Q Consensus        91 ~~~   93 (96)
                      ..+
T Consensus       207 ~~v  209 (212)
T 1q0x_L          207 KTL  209 (212)
T ss_dssp             EEE
T ss_pred             eee
Confidence            443

>2i24_N NEW antigen receptor PBLA8; immunoglobulin fold, immune system; 1.35A {Ginglymostoma cirratum} PDB: 2i25_N 2i27_N 2i26_N

Probab=99.23  E-value=7.1e-10  Score=52.50  Aligned_cols=78  Identities=23%  Similarity=0.409  Sum_probs=53.9

Q ss_pred             EEecCceeeecCCCcEEEEEEeeec--ccceeEEeeccc----e-eEecccceEEEEeccccceEEEEEEEccCCCCCCe
Q psy4613           4 IHVPNQLVGAPIDTDVTLECYVEAY--PKSINYWVRDQG----D-MVISSERYEVESISRSIFDFKMRLTIKKITKYDLG   76 (96)
Q Consensus         4 ~~~~~~~~~~~~g~~~~l~c~~~~~--~~~~~~w~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g   76 (96)
                      +...+..+.+..|++++|.|.+.+.  +.+.+.|++...    . +.....++........   ....|.|.+++.+|+|
T Consensus         3 v~Q~p~~v~v~~G~~vtL~C~~s~~~~~~~~v~Wyrq~~g~~~~~~~~~~~R~~~~~~~~~---~~~~L~I~~~~~~DsG   79 (121)
T 2i24_N            3 VDQTPQRITKETGESLTINCVVRDSRCVLSTGYWYRKPPGSRNEESISDGGRYVETVNRGS---KSFSLRINDLTVKDSG   79 (121)
T ss_dssp             EEEECSEEEEETTCCEEEEEEECSCCCCEEEEEEEEECTTCSCCEEECSBTTEEEEEETTT---TEEEEEECSCCGGGCE
T ss_pred             cEECCcEEEEecCCcEEEEeEccCCCCCCCEEEEEEeCCCCCceeeEecCCCeEEEecCCC---CEEEEEECCCChhhCE
Confidence            5566677889999999999998764  356899998531    1 1112344443221111   2467999999999999


Q ss_pred             eEEEEEec
Q psy4613          77 SYKCIAKN   84 (96)
Q Consensus        77 ~y~c~~~~   84 (96)
                      .|.|.+..
T Consensus        80 ~Y~C~~~~   87 (121)
T 2i24_N           80 TYRCKPES   87 (121)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEec
Confidence            99999864

>3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*

Probab=99.23  E-value=2.5e-10  Score=59.06  Aligned_cols=79  Identities=16%  Similarity=0.323  Sum_probs=55.6

Q ss_pred             EEecCceeeecCCCcEEEEEEeeecccceeEEeeccc--e--eEe---------cccceEEEEeccccceEEEEEEEccC
Q psy4613           4 IHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQG--D--MVI---------SSERYEVESISRSIFDFKMRLTIKKI   70 (96)
Q Consensus         4 ~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~--~--~~~---------~~~~~~~~~~~~~~~~~~~~l~i~~~   70 (96)
                      +..++..+.+..|+.+.|.|.+.+.+.+.+.|++...  .  ...         ...++.....     .....|.|.++
T Consensus        27 v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-----~~~~~L~I~~v  101 (237)
T 3sob_L           27 MTQSPSSLSASVGDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGS-----GTDFTLTISSL  101 (237)
T ss_dssp             EEEECSEEEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEE-----TTEEEEEESSC
T ss_pred             EEeCCCeEEEeCCCcEEEEEecCCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCcEEEEcC-----CCEEEEEECCC
Confidence            4445566788999999999999988888999988421  1  110         0123333211     02467999999


Q ss_pred             CCCCCeeEEEEEecCCC
Q psy4613          71 TKYDLGSYKCIAKNSLG   87 (96)
Q Consensus        71 ~~~d~g~y~c~~~~~~g   87 (96)
                      +..|.|.|.|.+.+..+
T Consensus       102 ~~~D~G~Y~C~~~~~~~  118 (237)
T 3sob_L          102 QPEDFATYYCQQSYTTP  118 (237)
T ss_dssp             CGGGCEEEEEEECSSSS
T ss_pred             ChhhCeEEEEeeccCCc
Confidence            99999999999987553

>4hwn_A FC receptor-like A; FCRLA, FCRL, IG-C2 domain, IG superfamily, immune system, ST genomics, PSI-biology; 2.01A {Homo sapiens}

Probab=99.23  E-value=2.4e-10  Score=53.08  Aligned_cols=72  Identities=15%  Similarity=0.229  Sum_probs=48.7

Q ss_pred             CCeEEecCceeeecCCCcEEEEEEeeecccc-----eeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCC
Q psy4613           1 HPVIHVPNQLVGAPIDTDVTLECYVEAYPKS-----INYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDL   75 (96)
Q Consensus         1 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~-----~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~   75 (96)
                      +|.+...+.. .+..|..++|.|.....+..     .+.|++++..+..       ..       ....+.|..++..|+
T Consensus         8 kP~l~~~p~~-~v~~G~~VtL~C~~~~~~~~~~~~~~~~w~k~g~~l~~-------~~-------~~~~l~i~~v~~~ds   72 (108)
T 4hwn_A            8 APILRAVPSA-EPQAGSPMTLSCQTKLPLQRSAARLLFSFYKDGRIVQS-------RG-------LSSEFQIPTASEDHS   72 (108)
T ss_dssp             CCEEEEESCS-SCBTTCCEEEEEEC---------CCEEEEEETTEEEEE-------EE-------SCCEEEESSCCGGGC
T ss_pred             CCEEEecCCC-cCCCCCcEEEEEcccCCCCCcCcceEEEEEECCcCccC-------CC-------cccEEEeCccCcccC
Confidence            3566555443 47789999999998764443     3889998654421       01       235689999999999


Q ss_pred             eeEEEEEecCCC
Q psy4613          76 GSYKCIAKNSLG   87 (96)
Q Consensus        76 g~y~c~~~~~~g   87 (96)
                      |.|.|.+.+..+
T Consensus        73 G~Y~C~~~~~~~   84 (108)
T 4hwn_A           73 GSYWCEAATEDN   84 (108)
T ss_dssp             EEEEEEEECTTS
T ss_pred             eEEEEEEEeCCC
Confidence            999999998654

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}

Probab=99.23  E-value=2.4e-10  Score=58.15  Aligned_cols=76  Identities=17%  Similarity=0.230  Sum_probs=53.7

Q ss_pred             cCCCcEEEEEEeeec-ccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCceEEE
Q psy4613          14 PIDTDVTLECYVEAY-PKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVESS   92 (96)
Q Consensus        14 ~~g~~~~l~c~~~~~-~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~~~~   92 (96)
                      ..+..+.|.|.+.+. |.+.+.|++++..+. ...++.+....     ....|.|.+++..|.|.|.|.+.+..|.....
T Consensus        15 c~~~~~~l~C~~~~~~p~~~i~W~~~g~~i~-~~~~~~~~~~~-----~~~~L~i~~v~~~D~G~Y~C~~~n~~~~~~~~   88 (212)
T 2r15_A           15 STAEGIQLYSFVTYYVEDLKVNWSHNGSAIR-YSDRVKTGVTG-----EQIWLQINEPTPNDKGKYVMELFDGKTGHQKT   88 (212)
T ss_dssp             ECSSEEEEEEEBSSCCSSCEEEEEETTEECC-CCSSEEEEEET-----TEEEEEEESCCGGGCEEEEEEEECSSCEEEEE
T ss_pred             EcCceEEEEEEEeccCCCceEEEEECCEEcc-CCCeEEEEEeC-----CEEEEEECCCCcccCEEEEEEEecCCcceEEE
Confidence            356667777777664 578999999875543 33444433211     23569999999999999999999988876655


Q ss_pred             EEe
Q psy4613          93 IRL   95 (96)
Q Consensus        93 ~~l   95 (96)
                      +.|
T Consensus        89 ~~l   91 (212)
T 2r15_A           89 VDL   91 (212)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            543

>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ...

Probab=99.22  E-value=1.2e-10  Score=59.38  Aligned_cols=77  Identities=16%  Similarity=0.244  Sum_probs=54.7

Q ss_pred             eEEecCceeeecCCCcEEEEEEeeecccceeEEeecc--cee--Ee---------cccceEEEEeccccceEEEEEEEcc
Q psy4613           3 VIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQ--GDM--VI---------SSERYEVESISRSIFDFKMRLTIKK   69 (96)
Q Consensus         3 ~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~--~~~--~~---------~~~~~~~~~~~~~~~~~~~~l~i~~   69 (96)
                      .+..++ .+.+..|+.+.|.|.+.  +.+.+.|++..  ...  ..         ...++......     ....|.|.+
T Consensus         3 ~v~~~~-~~~v~~G~~v~L~C~~~--~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~-----~~~~L~I~~   74 (211)
T 3tv3_L            3 ALTQPP-SASGSPGQSITISCTGT--SNNFVSWYQQHAGKAPKLVIYDVNKRPSGVPDRFSGSKSG-----NTASLTVSG   74 (211)
T ss_dssp             CCBCCS-EEEECTTCEEEEEEECC--CSSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEET-----TEEEEEEES
T ss_pred             eEEeCc-eEEEcCCCCEEEEEEEC--CCCeEEEEEECCCCCCEEEEEEecccCCCCcCcEEEEccC-----CEEEEEECC
Confidence            344556 78899999999999988  78899999842  111  11         11233332211     246799999


Q ss_pred             CCCCCCeeEEEEEecCCC
Q psy4613          70 ITKYDLGSYKCIAKNSLG   87 (96)
Q Consensus        70 ~~~~d~g~y~c~~~~~~g   87 (96)
                      ++..|.|.|.|.+.+..+
T Consensus        75 v~~~D~G~Y~C~~~~~~~   92 (211)
T 3tv3_L           75 LQTDDEAVYYCGSLVGNW   92 (211)
T ss_dssp             CCGGGCEEEEEEEEETTT
T ss_pred             CChhHCEEEEEEEecCCC
Confidence            999999999999998766

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.22  E-value=1.7e-11  Score=66.93  Aligned_cols=85  Identities=21%  Similarity=0.244  Sum_probs=63.6

Q ss_pred             CCeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCe-eEE
Q psy4613           1 HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLG-SYK   79 (96)
Q Consensus         1 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g-~y~   79 (96)
                      +|.+...+....+..|+.+.|.|.+.+.|.+.+.|++++..........        .......|.|.++...|.| .|.
T Consensus       158 ~P~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~i~W~~~~~~~~~~~~~~--------~~~~~~~L~i~~v~~~D~G~~Y~  229 (347)
T 2ifg_A          158 VPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKS--------GGLPSLGLTLANVTSDLNRKNVT  229 (347)
T ss_dssp             CCEEEEECCSSCCBTTCCEEEEEEEECSSCCCCCEEESCCCSSEEECCC--------CCSSEEEEEEESCCSTTTTCCEE
T ss_pred             CCceeccCCceEEeCCCcEEEEEEEecCCCCEEEEEcCCceeecccccc--------eecccceEEEeeCChHHCCCeEE
Confidence            3666666677788999999999999999999999999865432111110        0113578999999999999 999


Q ss_pred             EEEecCCCceEEEE
Q psy4613          80 CIAKNSLGEVESSI   93 (96)
Q Consensus        80 c~~~~~~g~~~~~~   93 (96)
                      |.+.+..|.....+
T Consensus       230 C~a~n~~g~~~~~~  243 (347)
T 2ifg_A          230 CWAENDVGRAEVSV  243 (347)
T ss_dssp             ECCEETTEECCEEE
T ss_pred             EEEEcCCCCEEEEE
Confidence            99999877655443

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}

Probab=99.22  E-value=5e-11  Score=59.89  Aligned_cols=69  Identities=17%  Similarity=0.211  Sum_probs=53.2

Q ss_pred             CCeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEE
Q psy4613           1 HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKC   80 (96)
Q Consensus         1 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c   80 (96)
                      +|.+...+.. .+..|+.+.|.|.+.+ +.+.+.|++++....         .       ....|.|.+++..|.|.|.|
T Consensus         8 ~P~i~~~p~~-~v~~G~~v~L~C~~~~-~~~~~~W~k~g~~~~---------~-------~~~~L~i~~v~~~D~G~Y~C   69 (184)
T 2gi7_A            8 KPSLQALPSS-LVPLEKPVTLRCQGPP-GVDLYRLEKLSSSRY---------Q-------DQAVLFIPAMKRSLAGRYRC   69 (184)
T ss_dssp             CCEEEEESCS-EEETTCCEEEEEECST-TCSEEEEEETTTCCE---------E-------SSSEEEESSCCGGGCEEEEE
T ss_pred             CCeEEeCCCc-cccCCCcEEEEEeCCC-CCCEEEEEECCcccc---------C-------cccEEEECcCChhhCceEEE
Confidence            3566655554 6889999999999877 777899999864410         0       12568999999999999999


Q ss_pred             EEecCCC
Q psy4613          81 IAKNSLG   87 (96)
Q Consensus        81 ~~~~~~g   87 (96)
                      .+.+..|
T Consensus        70 ~a~n~~g   76 (184)
T 2gi7_A           70 SYQNGSL   76 (184)
T ss_dssp             EEEETTE
T ss_pred             EEEcCCC
Confidence            9998654

>2jju_A Signal regulatory protein beta-1; immunoglobulin domain, immunoglobulin superfamily, immune system, transmembrane, paired receptor; 1.19A {Homo sapiens} PDB: 2jjv_A 2uv3_A* 2jjt_A* 2jjs_A* 2jjw_A

Probab=99.22  E-value=9e-11  Score=55.93  Aligned_cols=82  Identities=22%  Similarity=0.419  Sum_probs=53.0

Q ss_pred             EEecCceeeecCCCcEEEEEEeeec-ccceeEEeeccce---eEecc-----cceEEEEeccccceEEEEEEEccCCCCC
Q psy4613           4 IHVPNQLVGAPIDTDVTLECYVEAY-PKSINYWVRDQGD---MVISS-----ERYEVESISRSIFDFKMRLTIKKITKYD   74 (96)
Q Consensus         4 ~~~~~~~~~~~~g~~~~l~c~~~~~-~~~~~~w~~~~~~---~~~~~-----~~~~~~~~~~~~~~~~~~l~i~~~~~~d   74 (96)
                      +..++..+.+..|++++|.|.+.+. +.+.+.|++....   ++...     .++...............|.|.+++..|
T Consensus         6 v~q~p~~~~v~~G~~vtL~C~~~~~~~~~~v~W~r~~~~~~~li~~~~~~~~~r~~~~~~~~~~~~~~~~L~I~~v~~~D   85 (127)
T 2jju_A            6 VIQPEKSVSVAAGESATLRCAMTSLIPVGPIMWFRGAGAGRELIYNQKEGHFPRVTTVSELTKRNNLDFSISISNITPAD   85 (127)
T ss_dssp             EECCCSEEEEETTSCEEECCEESCCCSCCCEEEEECSSTTCEEEEESSSSCCTTEEEC-------CCBCCEEECSCCGGG
T ss_pred             EEeeCCeEEEeCCCCEEEEEEEeCCCCCCEEEEEecCCCCcEEEEECCCCccCcEEeeEeeeecCCCEEEEEECCCCHHH
Confidence            4456677889999999999998765 4668999986421   22111     1222110000000013569999999999


Q ss_pred             CeeEEEEEecC
Q psy4613          75 LGSYKCIAKNS   85 (96)
Q Consensus        75 ~g~y~c~~~~~   85 (96)
                      +|.|.|.+.+.
T Consensus        86 sG~Y~C~~~~~   96 (127)
T 2jju_A           86 AGTYYCVKFRK   96 (127)
T ss_dssp             CEEEEEEEEEC
T ss_pred             CEEEEEEEEcC
Confidence            99999998875

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.22  E-value=7.2e-11  Score=59.48  Aligned_cols=77  Identities=16%  Similarity=0.175  Sum_probs=53.6

Q ss_pred             CCeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEE
Q psy4613           1 HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKC   80 (96)
Q Consensus         1 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c   80 (96)
                      +|.+...+.. .+..|+.++|.|.+.+ +.+.+.|++++..+.......       ........|.|.+++..|.|.|.|
T Consensus         4 ~P~i~~~p~~-~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~-------~~~~~~~~L~I~~v~~~D~G~Y~C   74 (188)
T 1oll_A            4 KPFIWAEPHF-MVPKEKQVTICCQGNY-GAVEYQLHFEGSLFAVDRPKP-------PERINKVKFYIPDMNSRMAGQYSC   74 (188)
T ss_dssp             CCEEEEESCS-EEETTCCEEEEEECCT-TCCEEEEEETTEEEEEECCSS-------CTTCCEEEEEESSCCGGGCEEEEE
T ss_pred             CCEEEeecCC-cCCCCCCEEEEEecCC-CCCEEEEEECCCccccccccc-------CCCcceeEEEeCcCCcccCeEEEE
Confidence            4666665554 6889999999999865 446788998865543111000       001134679999999999999999


Q ss_pred             EEecCC
Q psy4613          81 IAKNSL   86 (96)
Q Consensus        81 ~~~~~~   86 (96)
                      .+.+..
T Consensus        75 ~~~~~~   80 (188)
T 1oll_A           75 IYRVGE   80 (188)
T ss_dssp             EEEETT
T ss_pred             EecCCC
Confidence            997753

>2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A*

Probab=99.22  E-value=2.6e-10  Score=59.51  Aligned_cols=80  Identities=18%  Similarity=0.275  Sum_probs=57.4

Q ss_pred             eEEecCceeeecCCCcEEEEEEeeecccceeEEeeccc----eeEec---------ccceEEEEeccccceEEEEEEEcc
Q psy4613           3 VIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQG----DMVIS---------SERYEVESISRSIFDFKMRLTIKK   69 (96)
Q Consensus         3 ~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~----~~~~~---------~~~~~~~~~~~~~~~~~~~l~i~~   69 (96)
                      .+...+..+.+..|+++.|.|.+.+.+.+.+.|++...    .....         ..++.....     .....|.|.+
T Consensus         3 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-----~~~~~L~I~~   77 (242)
T 2znx_A            3 VLTQSPATLSVTPGNSVSLSCRASQSIGNNLHXYQQKSHESPRLLIKYASQSISGIPSRFSGSGS-----GTDFTLSINS   77 (242)
T ss_dssp             CEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEE-----TTEEEEEESS
T ss_pred             cEEEcCCeEEEcCCCcEEEEEEeCCCCCceEEEEEeCCCCCceEEEEeccccCCCCCCCEEEecC-----CCEEEEEECC
Confidence            45566777889999999999999988888999998531    11110         123332210     0235799999


Q ss_pred             CCCCCCeeEEEEEecCCC
Q psy4613          70 ITKYDLGSYKCIAKNSLG   87 (96)
Q Consensus        70 ~~~~d~g~y~c~~~~~~g   87 (96)
                      ++..|+|.|.|.+.+..+
T Consensus        78 v~~~D~G~Y~C~~~n~~~   95 (242)
T 2znx_A           78 VETEDFGMYFCQQSNSXP   95 (242)
T ss_dssp             CCGGGCEEEEEEECSSSS
T ss_pred             CChHHCEEEEEeEecCCc
Confidence            999999999999988643

>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus}

Probab=99.22  E-value=2.2e-10  Score=59.96  Aligned_cols=81  Identities=17%  Similarity=0.336  Sum_probs=56.2

Q ss_pred             CeEEecCceeeecCCCcEEEEEEeeecc-----cceeEEeecc--ceeE--e---------cccceEEEEeccccceEEE
Q psy4613           2 PVIHVPNQLVGAPIDTDVTLECYVEAYP-----KSINYWVRDQ--GDMV--I---------SSERYEVESISRSIFDFKM   63 (96)
Q Consensus         2 p~~~~~~~~~~~~~g~~~~l~c~~~~~~-----~~~~~w~~~~--~~~~--~---------~~~~~~~~~~~~~~~~~~~   63 (96)
                      |.+...+..+.+..|+.+.|.|.+.+.+     .+.+.|++..  ..+.  .         ...++.....     ....
T Consensus        39 ~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~-----~~~~  113 (254)
T 2c1o_A           39 LVMTQSPLTLSVTIGQPASISCKSSQSLLYSNGKTYLNWLLQRPGQSPKRLIYLVSKLDSGDPDRFTGSGS-----GTDF  113 (254)
T ss_dssp             CCEEEECSEEEECTTSCEEEEEEESSCCBCSSSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEE-----TTEE
T ss_pred             eeEEeCCceEEecCCCcEEEEeeccCcccccCCCCceEEEEeCCCCCceEEEEeccccCCCccceEEEecC-----CCEE
Confidence            3455556678899999999999998877     3889999743  1110  0         0123332211     0235


Q ss_pred             EEEEccCCCCCCeeEEEEEecCCC
Q psy4613          64 RLTIKKITKYDLGSYKCIAKNSLG   87 (96)
Q Consensus        64 ~l~i~~~~~~d~g~y~c~~~~~~g   87 (96)
                      .|.|.+++..|.|.|.|.+.+..+
T Consensus       114 ~L~I~~v~~~D~G~Y~C~a~n~~~  137 (254)
T 2c1o_A          114 TLKISRVEAEDLGIYYCVQGSHFP  137 (254)
T ss_dssp             EEEESSCCGGGCSEEEEEECSSSS
T ss_pred             EEEECcCCcccCEEEEEEEEcCcc
Confidence            799999999999999999988754

>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus}

Probab=99.22  E-value=5.4e-10  Score=58.75  Aligned_cols=83  Identities=16%  Similarity=0.275  Sum_probs=58.2

Q ss_pred             CeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccc----eeEe----------cccceEEEEeccccceEEEEEEE
Q psy4613           2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQG----DMVI----------SSERYEVESISRSIFDFKMRLTI   67 (96)
Q Consensus         2 p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~----~~~~----------~~~~~~~~~~~~~~~~~~~~l~i   67 (96)
                      ..+..++..+.+..|+.+.|.|.+.+.+.+.+.|++...    ..+.          ...++.......   .....|.|
T Consensus         4 ~~v~q~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~---~~~~sL~I   80 (256)
T 3tf7_C            4 QSVTQPDARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGPQMLLKYYSGDPVVQGVNGFEAEFSKS---DSSFHLRK   80 (256)
T ss_dssp             CEEECSCSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECSTTCEEEEETT---TTEEEEEE
T ss_pred             cEEEecCceEEecCCCeEEEEEEeCCCCCceEEEEEECCCCCeEEEEEEccCCcccccCCCeEEEEcCC---CCEEEEEE
Confidence            356677778889999999999999998999999987421    1110          012222211110   12467999


Q ss_pred             ccCCCCCCeeEEEEEecCCC
Q psy4613          68 KKITKYDLGSYKCIAKNSLG   87 (96)
Q Consensus        68 ~~~~~~d~g~y~c~~~~~~g   87 (96)
                      .+++..|+|.|.|.+.+..+
T Consensus        81 ~~v~~~DsG~Y~C~~~~~~~  100 (256)
T 3tf7_C           81 ASVHRSDSAVYFCAVSAKGT  100 (256)
T ss_dssp             SSCCGGGCSEEEEEEECTTC
T ss_pred             CCCCcccCEEEEEEEecCCC
Confidence            99999999999999988654

>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H

Probab=99.21  E-value=6.9e-10  Score=58.43  Aligned_cols=77  Identities=14%  Similarity=0.258  Sum_probs=53.1

Q ss_pred             EEecCceeeecCCCcEEEEEEeeecccc-----eeEEee--ccceeE--ec---------ccceEEEEeccccceEEEEE
Q psy4613           4 IHVPNQLVGAPIDTDVTLECYVEAYPKS-----INYWVR--DQGDMV--IS---------SERYEVESISRSIFDFKMRL   65 (96)
Q Consensus         4 ~~~~~~~~~~~~g~~~~l~c~~~~~~~~-----~~~w~~--~~~~~~--~~---------~~~~~~~~~~~~~~~~~~~l   65 (96)
                      +...+..+.+..|+.+.|.|.+.+.+.+     .+.|++  .+..+.  ..         ..++.....     .....|
T Consensus       124 v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~-----~~~~~L  198 (256)
T 1nqb_A          124 LTQTPLSLPVSLGDQASISCRSSQSIVHSNGNTYLEWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGSGS-----GTDFTL  198 (256)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEE-----TTEEEE
T ss_pred             EEecCcEEEEecCCcEEEEeEecCcccccccceEEEEEEECCCCCcEEEEEEeCCCCCccCCcEEEEcc-----CCEEEE
Confidence            3344556678899999999999887765     899998  333221  00         123332211     024579


Q ss_pred             EEccCCCCCCeeEEEEEecC
Q psy4613          66 TIKKITKYDLGSYKCIAKNS   85 (96)
Q Consensus        66 ~i~~~~~~d~g~y~c~~~~~   85 (96)
                      .|.+++..|.|.|.|.+.+.
T Consensus       199 ~I~~v~~~DsG~Y~C~a~~~  218 (256)
T 1nqb_A          199 KISRVEAEDLGVYYCFQGSH  218 (256)
T ss_dssp             EESSCCGGGCEEEEEEECSS
T ss_pred             EECCCChHHCEEEEEEEccC
Confidence            99999999999999999874

>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ...

Probab=99.21  E-value=1.5e-11  Score=62.78  Aligned_cols=79  Identities=16%  Similarity=0.227  Sum_probs=52.6

Q ss_pred             CCCcEEEEEEeeecc--cceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCceEEE
Q psy4613          15 IDTDVTLECYVEAYP--KSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVESS   92 (96)
Q Consensus        15 ~g~~~~l~c~~~~~~--~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~~~~   92 (96)
                      .|..+.|.|.+.+.+  .+.+.|++++..+................+.....|.|......|.|.|.|.+.+..+.....
T Consensus       125 ~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~v~~~~~~~~~~  204 (211)
T 3tv3_L          125 QANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKT  204 (211)
T ss_dssp             HTTCEEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEECTTSSEEEEEEEEECHHHHHHSSCEEEEEEETTEEEEEE
T ss_pred             cCCCeEEEEEeeeecCCCeEEEEEECCeecCCCcccCCceECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEECCCCEEee
Confidence            599999999998853  468999998755421000000111111222244678888888889999999999988776655


Q ss_pred             E
Q psy4613          93 I   93 (96)
Q Consensus        93 ~   93 (96)
                      +
T Consensus       205 ~  205 (211)
T 3tv3_L          205 V  205 (211)
T ss_dssp             E
T ss_pred             c
Confidence            4

>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E

Probab=99.21  E-value=4e-10  Score=58.74  Aligned_cols=80  Identities=21%  Similarity=0.320  Sum_probs=56.4

Q ss_pred             CeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccc----eeE-ec-------------ccceEEEEeccccceEEE
Q psy4613           2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQG----DMV-IS-------------SERYEVESISRSIFDFKM   63 (96)
Q Consensus         2 p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~----~~~-~~-------------~~~~~~~~~~~~~~~~~~   63 (96)
                      +.+..++..+.+..|+.+.|.|.+.+.+.+.+.|++...    ... ..             ..++.+....    ....
T Consensus         2 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~----~~~~   77 (246)
T 4dzb_B            2 AVVSQHPSWVISKSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHAS----LTLS   77 (246)
T ss_dssp             CCEEEECSEEEEETTSCEEEEEEESSSCCCSEEEEEECTTSCCEEEEEECTTSCCEECTTCCGGGEEEEEEE----TTEE
T ss_pred             CccEECCcEEEEeCCCcEEEEeEecCCCceEEEEEEECCCCCcEEEEEEccCCCceecCcccCCcEEEEecC----CCEE
Confidence            356667778889999999999999988888999998210    110 00             0233332210    0235


Q ss_pred             EEEEccCCCCCCeeEEEEEecC
Q psy4613          64 RLTIKKITKYDLGSYKCIAKNS   85 (96)
Q Consensus        64 ~l~i~~~~~~d~g~y~c~~~~~   85 (96)
                      .|.|.+++..|.|.|.|.+.+.
T Consensus        78 ~L~I~~v~~~D~G~Y~C~~~~~   99 (246)
T 4dzb_B           78 TLTVTSAHPEDSSFYICSARTS   99 (246)
T ss_dssp             EEEECSCCGGGCEEEEEEECCS
T ss_pred             EEEECCCCHHHCEEEEEEEecC
Confidence            7999999999999999999864

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4

Probab=99.21  E-value=1.6e-11  Score=62.45  Aligned_cols=72  Identities=22%  Similarity=0.445  Sum_probs=53.4

Q ss_pred             eeecCCCcEEEEEE-eeecccceeEEeeccc-eeEeccc--------ceEEEEeccccceEEEEEEEccCCCCCCeeEEE
Q psy4613          11 VGAPIDTDVTLECY-VEAYPKSINYWVRDQG-DMVISSE--------RYEVESISRSIFDFKMRLTIKKITKYDLGSYKC   80 (96)
Q Consensus        11 ~~~~~g~~~~l~c~-~~~~~~~~~~w~~~~~-~~~~~~~--------~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c   80 (96)
                      ..+..|..+.|.|. +.+.|.+.+.|++++. .+.....        ++....       ....|.|.++...|.|.|.|
T Consensus       114 ~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~l~~~~~~~~~~~~~~~~~~~-------~~~~L~i~~~~~~d~G~Y~C  186 (212)
T 1f97_A          114 SSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDP-------KSGDLIFDPVTAFDSGEYYC  186 (212)
T ss_dssp             SEEETTSCEEEEEECSCCBSCCEEEEEETTEESBC-----CBSCSSSCEEECT-------TTCCEEESSCCGGGCEEEEE
T ss_pred             cccCCCCeEEEEEEcccCcCCCEEEEEeCCcccccccccccccccCceeEecC-------CCceEEEEecChhhCcEEEE
Confidence            34678999999999 7888999999999876 4432111        111100       13568999999999999999


Q ss_pred             EEecCCCce
Q psy4613          81 IAKNSLGEV   89 (96)
Q Consensus        81 ~~~~~~g~~   89 (96)
                      .+.|..|..
T Consensus       187 ~a~n~~g~~  195 (212)
T 1f97_A          187 QAQNGYGTA  195 (212)
T ss_dssp             EEECSSSCC
T ss_pred             EEccccCCc
Confidence            999998876

>3u6r_L Antibody 1:7 (light chain); IG-like domain, neutralizing single chain FV, immune system; 2.67A {Homo sapiens}

Probab=99.21  E-value=9.3e-10  Score=53.53  Aligned_cols=78  Identities=15%  Similarity=0.291  Sum_probs=55.0

Q ss_pred             eEEecCceeeecCCCcEEEEEEeeecccceeEEeecc--c--eeEec---------ccceEEEEeccccceEEEEEEEcc
Q psy4613           3 VIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQ--G--DMVIS---------SERYEVESISRSIFDFKMRLTIKK   69 (96)
Q Consensus         3 ~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~--~--~~~~~---------~~~~~~~~~~~~~~~~~~~l~i~~   69 (96)
                      .+...+..+.+..|++++|.|.+.......+.|++..  .  ..+..         ..++.....     .....|.|.+
T Consensus         2 ~v~Q~p~~v~v~~G~~vtL~C~~s~~~~~~v~Wyrq~~g~~~~~li~~~~~~~~~~~~Rfs~~~~-----~~~~sL~I~~   76 (143)
T 3u6r_L            2 ELTQSPATLSLSPGERATLSCRASQSVNKYLAWYQQKPGQAPRLLIYDASNRATGIPARFSGSGS-----GTDFTLTISN   76 (143)
T ss_dssp             CEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEE-----TTEEEEEECS
T ss_pred             eEEECCCEEEEeCCCCEEEEEEECCCCceeeEEEEECCCCCCEEEEEeCCccCCCccCcEeEEcc-----CCEEEEEEcc
Confidence            3566677788999999999999887666789999852  1  21111         123333210     1246799999


Q ss_pred             CCCCCCeeEEEEEecC
Q psy4613          70 ITKYDLGSYKCIAKNS   85 (96)
Q Consensus        70 ~~~~d~g~y~c~~~~~   85 (96)
                      ++..|+|.|.|.+.+.
T Consensus        77 l~~~DsG~Y~C~~~~~   92 (143)
T 3u6r_L           77 LEPEDFAVYYCQQRSD   92 (143)
T ss_dssp             CCGGGCEEEEEEECSS
T ss_pred             CcccCCEEEEEEEecC
Confidence            9999999999998764

>1zox_A CLM-1; IG-superfamily, IG-V, NKP44-like, myeloid IG-like receptor, structural genomics, PSI, protein structure initiative; 2.10A {Mus musculus}

Probab=99.21  E-value=2.2e-09  Score=49.98  Aligned_cols=84  Identities=17%  Similarity=0.277  Sum_probs=54.4

Q ss_pred             CceeeecCCCcEEEEEEeeecccc-eeEEeeccc----eeEe-c--------ccceEEEEeccccceEEEEEEEccCCCC
Q psy4613           8 NQLVGAPIDTDVTLECYVEAYPKS-INYWVRDQG----DMVI-S--------SERYEVESISRSIFDFKMRLTIKKITKY   73 (96)
Q Consensus         8 ~~~~~~~~g~~~~l~c~~~~~~~~-~~~w~~~~~----~~~~-~--------~~~~~~~~~~~~~~~~~~~l~i~~~~~~   73 (96)
                      +..+.+..|+++.|.|.+...... .+.|++...    ..+. .        ..++.+....   ......|.|.+++..
T Consensus         8 p~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~---~~~~~sL~I~~~~~~   84 (113)
T 1zox_A            8 PEEVSGQEQGSLTVQCRYTSGWKDYKKYWCQGVPQRSCKTLVETDASEQLVKKNRVSIRDNQ---RDFIFTVTMEDLRMS   84 (113)
T ss_dssp             CSEEEEETTSCEEEEEEECGGGTTSCEEEEESSSGGGCEEEEECCSSSCCEEETTEEEEEET---TTTEEEEEECSCCGG
T ss_pred             CCEEEEeCCCcEEEEeECCCCcccceEEEEeCCCCCCCeEEEEecCccccccCCCEEEEECC---cCCEEEEEEccCCHH
Confidence            456788999999999998764433 589998642    1111 1        1233322110   012467999999999


Q ss_pred             CCeeEEEEEecCCCceEEEEE
Q psy4613          74 DLGSYKCIAKNSLGEVESSIR   94 (96)
Q Consensus        74 d~g~y~c~~~~~~g~~~~~~~   94 (96)
                      |+|.|.|.+.+........+.
T Consensus        85 DsG~Y~C~v~~~~~~~~~~v~  105 (113)
T 1zox_A           85 DAGIYWCGITKGGLDPMFKVT  105 (113)
T ss_dssp             GCEEEEEEECCSSSCCEEEEE
T ss_pred             HCEEEEEeeEcCCCCccEEEE
Confidence            999999999887544444443

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A

Probab=99.20  E-value=2.6e-11  Score=61.69  Aligned_cols=87  Identities=24%  Similarity=0.324  Sum_probs=58.0

Q ss_pred             CCeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEeccc--c-eEEEEeccccceEEEEEEEccCCCCCCee
Q psy4613           1 HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSE--R-YEVESISRSIFDFKMRLTIKKITKYDLGS   77 (96)
Q Consensus         1 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~l~i~~~~~~d~g~   77 (96)
                      +|.+...+..+.+..|+.+.|.|.+.+.|.+.+.|++++..+.....  . ..... . ........+.|.++...|.|.
T Consensus         9 pp~i~~~p~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~l~i~~~~~~d~G~   86 (212)
T 2v9r_A            9 PPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLL-P-SGSLFFLRIVHGRKSRPDEGV   86 (212)
T ss_dssp             EEEEEECCCCEEECTTCCEEECCEEEEESCCEEEEEETTEECCCTTTCTTCSEEEC-T-TSCEEESSCCCCSSCCCSCEE
T ss_pred             CcceecCCCceEEeCCCcEEEEEEcCCCCCCEEEEEECCEEeeccccccccceEEe-c-CCcEEEEEEEecCCCcccCeE
Confidence            35667777778899999999999999989999999998655432111  0 01110 0 110011224445678999999


Q ss_pred             EEEEEecCCCce
Q psy4613          78 YKCIAKNSLGEV   89 (96)
Q Consensus        78 y~c~~~~~~g~~   89 (96)
                      |.|.+.+..|..
T Consensus        87 Y~C~~~n~~g~~   98 (212)
T 2v9r_A           87 YVCVARNYLGEA   98 (212)
T ss_dssp             EEEEEEETTEEE
T ss_pred             EEEEEECCCCce
Confidence            999999876643

>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens}

Probab=99.20  E-value=1.3e-10  Score=61.13  Aligned_cols=84  Identities=11%  Similarity=0.139  Sum_probs=46.5

Q ss_pred             CCeEEecCceeeecCCCcEEEEEEeeecccceeEEeecc--c--eeEeccc--------------ceEEEEeccccceEE
Q psy4613           1 HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQ--G--DMVISSE--------------RYEVESISRSIFDFK   62 (96)
Q Consensus         1 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~--~--~~~~~~~--------------~~~~~~~~~~~~~~~   62 (96)
                      +|.+..++..+.+..|+.+.|.|.+.+.+.+.+.|++..  .  .......              +.....   ......
T Consensus         2 s~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~---~~~~~~   78 (259)
T 3omz_A            2 SSNLEGRTKSVIRQTGSSAEITCDLAEGSTGYIHWYLHQEGKAPQRLLYYDSYTSSVVLESGISPGKYDTY---GSTRKN   78 (259)
T ss_dssp             ---------CEEEETTCCEEEECCC-----CEEEEEEECTTSCCEEEEEEETTTCCEEECTTCCBTTEEEE---CC--CC
T ss_pred             ccccccCCceeEecCCCcEEEEEEEccCCCcEEEEEEECCCCCcEEEEEEecCcCccccCCCCCcceeEee---cCCCCe
Confidence            356667777888999999999999998888899998832  1  1111000              000000   000022


Q ss_pred             EEEEEccCCCCCCeeEEEEEecCCC
Q psy4613          63 MRLTIKKITKYDLGSYKCIAKNSLG   87 (96)
Q Consensus        63 ~~l~i~~~~~~d~g~y~c~~~~~~g   87 (96)
                      ..|.|.+++..|+|.|.|.+.+..+
T Consensus        79 ~~L~I~~v~~~DsG~Y~C~~~~~~~  103 (259)
T 3omz_A           79 LRMILRNLIENDSGVYYCATWDQNY  103 (259)
T ss_dssp             CEEEESSCCGGGCEEEEEEEECTTS
T ss_pred             EEEEECCCCcccCEEEEEEEeeCCc
Confidence            4699999999999999999988654

>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*

Probab=99.20  E-value=3.8e-10  Score=57.58  Aligned_cols=79  Identities=15%  Similarity=0.198  Sum_probs=55.9

Q ss_pred             EEecCceeeecCCCcEEEEEEeeecccceeEEeecc--cee--Ee---------cccceEEEEeccccceEEEEEEEccC
Q psy4613           4 IHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQ--GDM--VI---------SSERYEVESISRSIFDFKMRLTIKKI   70 (96)
Q Consensus         4 ~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~--~~~--~~---------~~~~~~~~~~~~~~~~~~~~l~i~~~   70 (96)
                      +.. +..+.+..|+.+.|.|.+.+.+.+.+.|+++.  ...  ..         ...++.....     .....|.|.++
T Consensus         4 v~q-p~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~-----~~~~~L~I~~v   77 (210)
T 1lk3_L            4 LTQ-PPALTVSPGEKLTISCKASESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGS-----GTDFTLTIDPV   77 (210)
T ss_dssp             EEC-CSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEE-----TTEEEEEESSC
T ss_pred             EEC-CCcEEEcCCCCEEEEeeCCCccCCCEEEEEECCCCCeEEEEEccccccCCccccEEEEec-----CCEEEEEECCC
Confidence            444 66778999999999999998888899998842  111  10         0123332210     02357999999


Q ss_pred             CCCCCeeEEEEEecCCCc
Q psy4613          71 TKYDLGSYKCIAKNSLGE   88 (96)
Q Consensus        71 ~~~d~g~y~c~~~~~~g~   88 (96)
                      +..|.|.|.|.+.+..+.
T Consensus        78 ~~~D~G~Y~C~~~~~~~~   95 (210)
T 1lk3_L           78 EADDTAIYFCQQSWNGPL   95 (210)
T ss_dssp             CGGGCEEEEEEECSSSSC
T ss_pred             CHHHCeEEEEEEEcCCCc
Confidence            999999999999987653

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}

Probab=99.20  E-value=9.9e-10  Score=61.67  Aligned_cols=76  Identities=11%  Similarity=0.172  Sum_probs=52.9

Q ss_pred             ceeeecCCCcEEEEEEeee-cccceeEEeeccceeEecccceEEEEeccc-cceEEEEEEEccCCCCCCeeEEEEEecC
Q psy4613           9 QLVGAPIDTDVTLECYVEA-YPKSINYWVRDQGDMVISSERYEVESISRS-IFDFKMRLTIKKITKYDLGSYKCIAKNS   85 (96)
Q Consensus         9 ~~~~~~~g~~~~l~c~~~~-~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~i~~~~~~d~g~y~c~~~~~   85 (96)
                      ....+..|+.+.|.|.+.+ .|.+.+.|++++..+. ............. .......|.|.++...|.|.|.|.+.|.
T Consensus       235 ~~~~v~~G~~v~L~C~~~g~~p~p~i~W~k~g~~l~-~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~  312 (423)
T 3qs7_E          235 PQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALE-EGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKH  312 (423)
T ss_dssp             TEEEEETTSCEEEEEEEEESSSCCCEEEEESSSBCC-GGGEEEEEEEETTTEEEEEEEEEESSCCTTTCEEEEEEETTE
T ss_pred             CceEEeCCCeEEEEEEEEcCCCCcEEEEEECCEEcc-ccceeecccccCCceeEEEEEEEEeecCHHHCEEEEEEEecC
Confidence            4566788999999999998 6678999999876542 1111111110000 0113467999999999999999999887

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*

Probab=99.20  E-value=3.3e-11  Score=60.05  Aligned_cols=74  Identities=18%  Similarity=0.204  Sum_probs=55.2

Q ss_pred             CCeEEecCceeeecCCCcEEEEEEeeecccc-eeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEE
Q psy4613           1 HPVIHVPNQLVGAPIDTDVTLECYVEAYPKS-INYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYK   79 (96)
Q Consensus         1 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~   79 (96)
                      +|.+...+....+..|+.+.|.|.+.+.+.+ .+.|++++..+..                ....|.|.+++..|.|.|.
T Consensus         4 ~P~i~~~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~----------------~~~~L~i~~v~~~d~G~Y~   67 (176)
T 1f2q_A            4 KPKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEE----------------TNSSLNIVNAKFEDSGEYK   67 (176)
T ss_dssp             CCCCEEESSCSEEETTCCEEEECCTTCC----CCEEEETTEECSC----------------CSSEEEECSCCGGGCEEEE
T ss_pred             CCEEEcCCCCcceecCCcEEEEEeCCCCCCcceEEEEECCeECCC----------------CceEEEEeccceecCEEEE
Confidence            3566666666778999999999999887775 6899998654321                1256899999999999999


Q ss_pred             EEEecCCCceE
Q psy4613          80 CIAKNSLGEVE   90 (96)
Q Consensus        80 c~~~~~~g~~~   90 (96)
                      |.+.+..+...
T Consensus        68 C~~~~~~~s~~   78 (176)
T 1f2q_A           68 CQHQQVNESEP   78 (176)
T ss_dssp             EECTTSSCCCC
T ss_pred             EEcCCcccccc
Confidence            99988665443

>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor, adhesion, structural genomics, NEW YORK STR genomics research consortium, nysgrc; 1.70A {Homo sapiens} PDB: 3rq3_A 3udw_A* 3ucr_A

Probab=99.20  E-value=3.3e-10  Score=53.28  Aligned_cols=80  Identities=21%  Similarity=0.331  Sum_probs=52.8

Q ss_pred             CceeeecCCCcEEEEEEeee--cccceeEEeeccceeEec------------ccceEEEEeccccceEEEEEEEccCCCC
Q psy4613           8 NQLVGAPIDTDVTLECYVEA--YPKSINYWVRDQGDMVIS------------SERYEVESISRSIFDFKMRLTIKKITKY   73 (96)
Q Consensus         8 ~~~~~~~~g~~~~l~c~~~~--~~~~~~~w~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~l~i~~~~~~   73 (96)
                      +..+.+..|+++.|.|.+.+  .....+.|++....+...            ..|..+.        ....|.|.+++..
T Consensus        10 ~~~v~~~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~i~~~~~~~~~~~~~~~~~R~~~~--------~~~sL~I~~v~~~   81 (117)
T 3q0h_A           10 TGNISAEKGGSIILQCHLSSTTAQVTQVNWEQQDQLLAICNADLGWHISPSFKDRVAPG--------PGLGLTLQSLTVN   81 (117)
T ss_dssp             SCCEEEETTCCEEECEEEESCCCEEEEEEEEETTEEEEEEETTTEEECCGGGTTTEEEC--------STTCEEECSCCGG
T ss_pred             cCCEEEecCCCEEEEEEecCCCCCEEEEEEEeCCEEEEEEECCCCceeCccccCcEEeC--------CceEEEEeeCChh
Confidence            34567889999999999887  334478999875332211            1122110        1246999999999


Q ss_pred             CCeeEEEEEec-CCCceEEEEEe
Q psy4613          74 DLGSYKCIAKN-SLGEVESSIRL   95 (96)
Q Consensus        74 d~g~y~c~~~~-~~g~~~~~~~l   95 (96)
                      |.|.|.|.+.. ..|.....+.|
T Consensus        82 D~G~Y~C~v~~~~~g~~~~~~~L  104 (117)
T 3q0h_A           82 DTGEYFCIYHTYPDGTYTGRIFL  104 (117)
T ss_dssp             GCEEEEEEEEEETTCCEEEEEEE
T ss_pred             hCEEEEEEEEECCCCCeEEEEEE
Confidence            99999999754 45665554443

>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*

Probab=99.20  E-value=3.5e-11  Score=61.42  Aligned_cols=75  Identities=12%  Similarity=0.231  Sum_probs=49.1

Q ss_pred             cCCCcEEEEEEeeec-ccc-eeEEeeccceeEec-ccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCc
Q psy4613          14 PIDTDVTLECYVEAY-PKS-INYWVRDQGDMVIS-SERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGE   88 (96)
Q Consensus        14 ~~g~~~~l~c~~~~~-~~~-~~~w~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~   88 (96)
                      ..|..+.|.|.+.+. |.+ .+.|++++..+... .............+...+.|.|..+...|.|.|.|.+.+....
T Consensus       124 ~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~  201 (210)
T 1lk3_L          124 LATGGASVVCLMNNFYPRDISVKWKIDGTERRDGVLDSVTDQDSKDSTYSMSSTLSLTKADYESHNLYTCEVVHKTSS  201 (210)
T ss_dssp             HTTTEEEEEEEEEEEBSSCCEEEEEETTEECCTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTCS
T ss_pred             ccCCcEEEEEEEEeEeCCceEEEEEeCCccCCCCceEccCCccCCCCCEEEEEEEEEChHHhccCCcEEEEEEecCCC
Confidence            468899999999874 443 79999987554211 0000000111112224567999999999999999999997663

>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1

Probab=99.20  E-value=1.3e-10  Score=61.13  Aligned_cols=74  Identities=22%  Similarity=0.280  Sum_probs=52.4

Q ss_pred             CceeeecCCCcEEEEEEeeecccceeEEee--ccceeE--ec---------ccceEEEEeccccceEEEEEEEccCCCCC
Q psy4613           8 NQLVGAPIDTDVTLECYVEAYPKSINYWVR--DQGDMV--IS---------SERYEVESISRSIFDFKMRLTIKKITKYD   74 (96)
Q Consensus         8 ~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~--~~~~~~--~~---------~~~~~~~~~~~~~~~~~~~l~i~~~~~~d   74 (96)
                      +..+.+..|+.+.|.|.+.+.+.+.+.|++  .+..+.  ..         ..++.....     .....|.|.+++..|
T Consensus       146 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~-----~~~~~L~I~~v~~~D  220 (257)
T 1f3r_B          146 PSLLSASVGDRVTLSCKGSQNINNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGS-----GTDYTLTISSLQPED  220 (257)
T ss_dssp             TSEECCCTTCCEEEEEECSSCCBTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEE-----BTEEEEEECSCCGGG
T ss_pred             CCEEEEcCCCCEEEEEEECCcCCCcEEEEEECCCCCcEEEEEEccCCCCCcCCCEEEecC-----CCEEEEEECCCChhh
Confidence            345567889999999999988888999998  333221  10         123332210     123579999999999


Q ss_pred             CeeEEEEEecCC
Q psy4613          75 LGSYKCIAKNSL   86 (96)
Q Consensus        75 ~g~y~c~~~~~~   86 (96)
                      +|.|.|.+.|..
T Consensus       221 ~G~Y~C~a~n~~  232 (257)
T 1f3r_B          221 VATYFCYQYNNG  232 (257)
T ss_dssp             CSEEEEEEESSS
T ss_pred             CEEEEEEEeCCC
Confidence            999999999863

>1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A

Probab=99.20  E-value=4.6e-10  Score=58.58  Aligned_cols=80  Identities=14%  Similarity=0.332  Sum_probs=56.2

Q ss_pred             eEEecCceeeecCCCcEEEEEEeeecc-----cceeEEeeccc----eeEec---------ccceEEEEeccccceEEEE
Q psy4613           3 VIHVPNQLVGAPIDTDVTLECYVEAYP-----KSINYWVRDQG----DMVIS---------SERYEVESISRSIFDFKMR   64 (96)
Q Consensus         3 ~~~~~~~~~~~~~g~~~~l~c~~~~~~-----~~~~~w~~~~~----~~~~~---------~~~~~~~~~~~~~~~~~~~   64 (96)
                      .+...+..+.+..|+.+.|.|.+.+.+     .+.+.|++...    .....         ..++.....     .....
T Consensus         3 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-----~~~~~   77 (247)
T 1svz_A            3 LMTQTPLYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGS-----GTDFT   77 (247)
T ss_dssp             CEEEECSEEEECTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEE-----TTEEE
T ss_pred             cEEecCCeEEecCCCCEEEEEeCCCcccccCCCceEEEEEECCCCCceEEEEEecccCCCCCCcEEeccC-----CCEEE
Confidence            355666778899999999999998877     68899988421    11110         123332210     02357


Q ss_pred             EEEccCCCCCCeeEEEEEecCCC
Q psy4613          65 LTIKKITKYDLGSYKCIAKNSLG   87 (96)
Q Consensus        65 l~i~~~~~~d~g~y~c~~~~~~g   87 (96)
                      |.|.+++..|.|.|.|.+.+..+
T Consensus        78 L~I~~v~~~D~G~Y~C~~~n~~~  100 (247)
T 1svz_A           78 LKISRVEAEDLGIYYCFQGSHFP  100 (247)
T ss_dssp             EEESSCCGGGCEEEEEEECSSSS
T ss_pred             EEECCCCHHHCEEEEEEEccCCc
Confidence            99999999999999999988644

>1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=99.20  E-value=3.3e-10  Score=58.84  Aligned_cols=80  Identities=15%  Similarity=0.280  Sum_probs=56.8

Q ss_pred             eEEecCceeeecCCCcEEEEEEeeecc----cceeEEeecc--ce--eEec---------ccceEEEEeccccceEEEEE
Q psy4613           3 VIHVPNQLVGAPIDTDVTLECYVEAYP----KSINYWVRDQ--GD--MVIS---------SERYEVESISRSIFDFKMRL   65 (96)
Q Consensus         3 ~~~~~~~~~~~~~g~~~~l~c~~~~~~----~~~~~w~~~~--~~--~~~~---------~~~~~~~~~~~~~~~~~~~l   65 (96)
                      .+...+..+.+..|+.+.|.|.+.+.+    .+.+.|+++.  ..  ....         ..++.....     .....|
T Consensus         3 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-----~~~~~L   77 (240)
T 1moe_A            3 VLTQSPASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGS-----RTDFTL   77 (240)
T ss_dssp             CEEEECSEEEECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEE-----TTEEEE
T ss_pred             ceEeeCCeEEecCCCCEEEEEeCCCccccCCCceEEEEEECCCCCceEEEEEecccCcCCCccEEEEec-----CCeEEE
Confidence            455667778899999999999999887    7789999852  11  1110         123333210     023579


Q ss_pred             EEccCCCCCCeeEEEEEecCCC
Q psy4613          66 TIKKITKYDLGSYKCIAKNSLG   87 (96)
Q Consensus        66 ~i~~~~~~d~g~y~c~~~~~~g   87 (96)
                      .|.+++..|.|.|.|.+.+..+
T Consensus        78 ~I~~v~~~D~G~Y~C~~~n~~~   99 (240)
T 1moe_A           78 IIDPVEADDVATYYCQQTNEDP   99 (240)
T ss_dssp             EESSCCGGGCEEEEEEECSSSS
T ss_pred             EEcCCChhhCEEEEEEEccCCc
Confidence            9999999999999999998744

>1pew_A JTO2, A lambda-6 type immunoglobulin light chain, domain; beta sheet, immune system; 1.60A {Homo sapiens} SCOP: b.1.1.1 PDB: 1cd0_A 1pw3_A 2cd0_A 2w0k_A 3b5g_A 3bdx_A* 2w0l_A

Probab=99.20  E-value=1e-09  Score=50.91  Aligned_cols=78  Identities=18%  Similarity=0.284  Sum_probs=52.7

Q ss_pred             EEecCceeeecCCCcEEEEEE-eeecc-cceeEEeecccee--Ee-c--------ccceEEEEeccccceEEEEEEEccC
Q psy4613           4 IHVPNQLVGAPIDTDVTLECY-VEAYP-KSINYWVRDQGDM--VI-S--------SERYEVESISRSIFDFKMRLTIKKI   70 (96)
Q Consensus         4 ~~~~~~~~~~~~g~~~~l~c~-~~~~~-~~~~~w~~~~~~~--~~-~--------~~~~~~~~~~~~~~~~~~~l~i~~~   70 (96)
                      +.. +..+.+..|+++.|.|. +.+.+ .+.+.|++.....  +. .        ..++.......   .....|.|.++
T Consensus         4 v~q-p~~~~v~~G~~v~L~C~v~~~~~~~~~v~W~r~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~---~~~~~L~I~~v   79 (109)
T 1pew_A            4 LNQ-PHSVSESPGKTVTISCTRSSGNIASNYVQWYQQRSAPITVIYEDNQRPSGVPDRFAGSIDRS---SNSASLTISGL   79 (109)
T ss_dssp             EEC-CSEEEECTTSCEEEEEEESSSCGGGSCCEEEEC-CCCEEEEBTTTBCCTTCCTTEEEEEETT---TTEEEEEECSC
T ss_pred             EEC-CCCEEEcCCCCEEEEEEeCCCCCCCccEEEEEECCCCcEEEEecCCcCCCCCCcEEEEeccC---CCEEEEEECCC
Confidence            445 56778999999999999 77654 4789999875211  11 0        12333321111   12467999999


Q ss_pred             CCCCCeeEEEEEecC
Q psy4613          71 TKYDLGSYKCIAKNS   85 (96)
Q Consensus        71 ~~~d~g~y~c~~~~~   85 (96)
                      +..|+|.|.|.+.+.
T Consensus        80 ~~~DsG~Y~C~~~~~   94 (109)
T 1pew_A           80 KTEDEADYYCQSYDA   94 (109)
T ss_dssp             CGGGCEEEEEEEEET
T ss_pred             ChhhCEEEEEEEEeC
Confidence            999999999999874

>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...

Probab=99.19  E-value=2.4e-11  Score=62.07  Aligned_cols=75  Identities=19%  Similarity=0.319  Sum_probs=49.5

Q ss_pred             cCCCcEEEEEEeee-cccc-eeEEeeccceeEec-ccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCc
Q psy4613          14 PIDTDVTLECYVEA-YPKS-INYWVRDQGDMVIS-SERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGE   88 (96)
Q Consensus        14 ~~g~~~~l~c~~~~-~~~~-~~~w~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~   88 (96)
                      ..|..+.|.|.+.+ .|.+ .+.|++++..+... .............+...+.|.|.++...|.|.|.|.+.|....
T Consensus       125 ~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~  202 (213)
T 3d9a_L          125 LTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTST  202 (213)
T ss_dssp             HHTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHHCCEEEEEEECTTCS
T ss_pred             cCCCcEEEEEEEeeecCCceEEEEEcCCCcCcceeeecCCCccCCCCCEEEEEEEEEeccccCCCCEEEEEEEEccCC
Confidence            35889999999987 5555 79999986554311 0000000011112223568999999999999999999997655

>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A

Probab=99.19  E-value=6.1e-10  Score=58.46  Aligned_cols=79  Identities=24%  Similarity=0.347  Sum_probs=53.9

Q ss_pred             eEEecCceeeecCCCcEEEEEEeeecccc-eeEEeecc--ceeE--ec---------ccceEEEEeccccceEEEEEEEc
Q psy4613           3 VIHVPNQLVGAPIDTDVTLECYVEAYPKS-INYWVRDQ--GDMV--IS---------SERYEVESISRSIFDFKMRLTIK   68 (96)
Q Consensus         3 ~~~~~~~~~~~~~g~~~~l~c~~~~~~~~-~~~w~~~~--~~~~--~~---------~~~~~~~~~~~~~~~~~~~l~i~   68 (96)
                      .+...+....+..|+.+.|.|.+.+.+.+ .+.|++..  ....  ..         ..++.....     .....|.|.
T Consensus       143 ~~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-----~~~~~L~I~  217 (257)
T 3gkz_A          143 VLTQSPAIMSASPGEKVTLTCSASSSVSSSHLYWYQQKPGSSPKLWIYSTSNLASGVPARFSGSGS-----GTSYSLTIS  217 (257)
T ss_dssp             CEECSCSEEEECTTCCEEEEEEESSCCCGGGEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEE-----TTEEEEEES
T ss_pred             EEEcCCceEEEeCCCcEEEEEEEccCccceEEEEEEECCCCCcEEEEEEccccCCCcCCCEEEecC-----CCEEEEEEC
Confidence            34445566778899999999999887777 89999742  1111  00         123222110     023579999


Q ss_pred             cCCCCCCeeEEEEEecCC
Q psy4613          69 KITKYDLGSYKCIAKNSL   86 (96)
Q Consensus        69 ~~~~~d~g~y~c~~~~~~   86 (96)
                      +++..|+|.|.|.+.+..
T Consensus       218 ~v~~~D~G~Y~C~~~~~~  235 (257)
T 3gkz_A          218 SMEAEDAASYFCHQWSSF  235 (257)
T ss_dssp             SCCGGGCEEEEEEECSSS
T ss_pred             CCChHHCEEEEEEEccCC
Confidence            999999999999998743

>1tvd_A T cell receptor, ES204 V delta; immunoreceptor, TCR, delta chain, variable domain; 1.90A {Homo sapiens} SCOP: b.1.1.1

Probab=99.19  E-value=8.6e-10  Score=51.67  Aligned_cols=79  Identities=18%  Similarity=0.305  Sum_probs=53.6

Q ss_pred             EEecCceeeecCCCcEEEEEEeeec-ccceeEEeeccc----eeEe-c-----------ccceEEEEeccccceEEEEEE
Q psy4613           4 IHVPNQLVGAPIDTDVTLECYVEAY-PKSINYWVRDQG----DMVI-S-----------SERYEVESISRSIFDFKMRLT   66 (96)
Q Consensus         4 ~~~~~~~~~~~~g~~~~l~c~~~~~-~~~~~~w~~~~~----~~~~-~-----------~~~~~~~~~~~~~~~~~~~l~   66 (96)
                      +...+..+.+..|++++|.|.+... +...+.|++...    ..+. .           ..++......   ......|.
T Consensus         3 v~q~p~~~~~~~G~~vtL~C~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~---~~~~~~L~   79 (116)
T 1tvd_A            3 VTQSSPDQTVASGSEVVLLCTYDTVYSNPDLFWYRIRPDYSFQFVFYGDDSRSEGADFTQGRFSVKHIL---TQKAFHLV   79 (116)
T ss_dssp             EECCSCCEEEETTCCEEECCEEECCSSSCCEEEEEECTTSCEEEEEEECSSCEEECGGGTTTEEEEEEG---GGTEEEEE
T ss_pred             eecCCCcEEEecCCeEEEEeEeEcCCCCcEEEEEEeCCCCCcEEEEEECCcccccCcccCCCEEEEEec---CCCEEEEE
Confidence            4566777889999999999998754 456799987531    1111 0           1233322110   11235799


Q ss_pred             EccCCCCCCeeEEEEEecC
Q psy4613          67 IKKITKYDLGSYKCIAKNS   85 (96)
Q Consensus        67 i~~~~~~d~g~y~c~~~~~   85 (96)
                      |.+++..|+|.|.|.+.+.
T Consensus        80 I~~~~~~DsG~Y~C~~~~~   98 (116)
T 1tvd_A           80 ISPVRTEDSATYYCAFTLP   98 (116)
T ss_dssp             ESSCCGGGCEEEEEEEECT
T ss_pred             EccCChHHCEEEEEEEeCC
Confidence            9999999999999999874

>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}

Probab=99.19  E-value=2.3e-10  Score=65.31  Aligned_cols=80  Identities=15%  Similarity=0.162  Sum_probs=53.2

Q ss_pred             eeeecCCCcEEEEEEeeecccc--eeEEeeccceeEecccceE-EEEeccccceEEEEEEEccCCCCCCeeEEEEEecCC
Q psy4613          10 LVGAPIDTDVTLECYVEAYPKS--INYWVRDQGDMVISSERYE-VESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSL   86 (96)
Q Consensus        10 ~~~~~~g~~~~l~c~~~~~~~~--~~~w~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~   86 (96)
                      ...+..|+.+.|.|.+.+.+.+  .+.|++++..+.. ..... ........+...+.|.|..+...|.|.|.|.+.+..
T Consensus       123 ~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~-~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~  201 (523)
T 2rcj_C          123 SSEELQANKATLVCLISDFYPGAVTVAWKADGSPVKA-GVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEG  201 (523)
T ss_pred             cccccCCCceEEEEEeccccCCceEEEEecCCCCCCC-ceEeccccccCCCCEEEEEEEEEechhcCCCceEEEEEEecC
Confidence            3345568899999999987654  8999998755431 11111 000111122234679999999999999999999987


Q ss_pred             CceE
Q psy4613          87 GEVE   90 (96)
Q Consensus        87 g~~~   90 (96)
                      +...
T Consensus       202 ~~~~  205 (523)
T 2rcj_C          202 STVE  205 (523)
T ss_pred             cccc
Confidence            7543

>1oaq_L Light chain; antibody, allergy, IGE, conformational diversity, multispecificity; 1.50A {Rattus rattus} SCOP: b.1.1.1 PDB: 1ocw_L 2bjm_L* 1oau_L* 1oar_L* 1oaz_L 1mfa_L* 1a6v_L* 1oax_L* 1oay_L* 1a6w_L* 1a6u_L 1dl7_L*

Probab=99.19  E-value=4.9e-10  Score=52.84  Aligned_cols=77  Identities=23%  Similarity=0.299  Sum_probs=52.6

Q ss_pred             eEEecCceeeecCCCcEEEEEEeeecc---cceeEEeeccc----eeEec---------ccceEEEEeccccceEEEEEE
Q psy4613           3 VIHVPNQLVGAPIDTDVTLECYVEAYP---KSINYWVRDQG----DMVIS---------SERYEVESISRSIFDFKMRLT   66 (96)
Q Consensus         3 ~~~~~~~~~~~~~g~~~~l~c~~~~~~---~~~~~w~~~~~----~~~~~---------~~~~~~~~~~~~~~~~~~~l~   66 (96)
                      .+..++. +.+..|+++.|.|.+.+.+   ...+.|++...    ..+..         ..++.....     .....|.
T Consensus         3 ~v~q~~~-~~~~~G~~v~L~C~~~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~-----~~~~~L~   76 (120)
T 1oaq_L            3 VVTQESA-LTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLI-----GNKAALT   76 (120)
T ss_dssp             CEEECSE-EEECTTCEEEEEEEETTBCCCGGGCCEEEEEETTTEEEEEEETTTEECTTSCTTEEEEEE-----TTEEEEE
T ss_pred             cEEcCCc-EEEcCCCCEEEEEEeCCCccCCCCEEEEEEeCCCCCCeEEEEEcCccCCCCCCceEEecC-----CCeEEEE
Confidence            3455554 8899999999999987654   56899987531    11110         123332210     1235799


Q ss_pred             EccCCCCCCeeEEEEEecC
Q psy4613          67 IKKITKYDLGSYKCIAKNS   85 (96)
Q Consensus        67 i~~~~~~d~g~y~c~~~~~   85 (96)
                      |.+++.+|+|.|.|.+.+.
T Consensus        77 I~~~~~~DsG~Y~C~~~~~   95 (120)
T 1oaq_L           77 ITGAQTEDEAIYFCALWYS   95 (120)
T ss_dssp             EESCCGGGCEEEEEEEEET
T ss_pred             ECCCChhhCeEEEEEEccC
Confidence            9999999999999998865

>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A

Probab=99.19  E-value=4e-10  Score=57.29  Aligned_cols=77  Identities=16%  Similarity=0.091  Sum_probs=52.3

Q ss_pred             CeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEE
Q psy4613           2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCI   81 (96)
Q Consensus         2 p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~   81 (96)
                      |.+...+. ..+..|+.++|.|.+.+ +.+.+.|++++..+..........     .......|.|.+++..|.|.|.|.
T Consensus         9 P~i~~~p~-~~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~-----~~~~~~~l~I~~v~~~D~G~Y~C~   81 (201)
T 1nkr_A            9 PSLLAHPG-PLVKSEETVILQCWSDV-MFEHFLLHREGMFNDTLRLIGEHH-----DGVSKANFSISRMTQDLAGTYRCY   81 (201)
T ss_dssp             CEEEEESC-SEEETTCCEEEEEEESS-CCSEEEEEEESSSCEEEEEECEEE-----TTEEEEEEEESSCCGGGCEEEEEE
T ss_pred             CeEEEEcC-CccCCCCcEEEEEeccC-CCCEEEEEECCCcCCcceeeeecC-----CCCceEEEEeccCCcccCeEEEEe
Confidence            55555444 55789999999999864 677899999875443110000000     001346799999999999999999


Q ss_pred             EecC
Q psy4613          82 AKNS   85 (96)
Q Consensus        82 ~~~~   85 (96)
                      +.+.
T Consensus        82 a~~~   85 (201)
T 1nkr_A           82 GSVT   85 (201)
T ss_dssp             EEBT
T ss_pred             EecC
Confidence            9753

>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=99.19  E-value=1e-09  Score=58.44  Aligned_cols=75  Identities=20%  Similarity=0.324  Sum_probs=52.6

Q ss_pred             EecCceeeecCCCcEEEEEEeeecccceeEEeec--cceeE--e---------cccceEEEEeccccceEEEEEEEccCC
Q psy4613           5 HVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRD--QGDMV--I---------SSERYEVESISRSIFDFKMRLTIKKIT   71 (96)
Q Consensus         5 ~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~--~~~~~--~---------~~~~~~~~~~~~~~~~~~~~l~i~~~~   71 (96)
                      ..++..+.+..|+.+.|.|.+.+.+ +.+.|++.  +..+.  .         ...++.....     .....|.|.+++
T Consensus       166 ~~~p~~~~v~~G~~v~L~C~~~~~~-~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~-----~~~~~L~I~~v~  239 (282)
T 1qok_A          166 TQSPAIMSASPGEKVTITCSASSSV-SYMHWFQQKPGTSPKLWIYSTSNLASGVPARFSGSGS-----GTSYSLTISRME  239 (282)
T ss_dssp             EEECSEEEECTTCCEEEEEEESSCC-SCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEE-----TTEEEEEESSCC
T ss_pred             ecCCCEEEEcCCCcEEEEEEecCCC-ceEEEEEECCCCCcEEEEEEecCCCCcccCCeEEecC-----CCEEEEEEccCC
Confidence            3344556788999999999999888 89999983  33221  0         0123332211     024579999999


Q ss_pred             CCCCeeEEEEEecC
Q psy4613          72 KYDLGSYKCIAKNS   85 (96)
Q Consensus        72 ~~d~g~y~c~~~~~   85 (96)
                      ..|.|.|.|.+.+.
T Consensus       240 ~~DsG~Y~C~a~~~  253 (282)
T 1qok_A          240 AEDAATYYCQQRSS  253 (282)
T ss_dssp             GGGCEEEEEEECSS
T ss_pred             hhHCEEEEEEEeeC
Confidence            99999999999874

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*

Probab=99.18  E-value=1.5e-10  Score=59.15  Aligned_cols=63  Identities=16%  Similarity=0.075  Sum_probs=48.6

Q ss_pred             eeecCCCcEEEEEEeeec-ccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCC
Q psy4613          11 VGAPIDTDVTLECYVEAY-PKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLG   87 (96)
Q Consensus        11 ~~~~~g~~~~l~c~~~~~-~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g   87 (96)
                      ..+..|+.+.|.|.+.+. +.+.+.|++++..+...       .       ....|.|.++...|.|.|.|.+.|..+
T Consensus        98 ~~v~~G~~v~L~C~~~~~~p~~~v~W~k~g~~~~~~-------~-------~~~~L~i~~v~~~D~G~Y~C~a~n~~~  161 (204)
T 3sgj_C           98 WVFKEEDPIHLRCHSWKNTALHKVTYLQNGKGRKYF-------H-------HNSDFYIPKATLKDSGSYFCRGLVGSK  161 (204)
T ss_dssp             SEEETTCCEEEEEEEGGGCCCEEEEEEETTEEEEEE-------E-------ECCCEEESSCCGGGCEEEEEEEEETTE
T ss_pred             eeEeCCCcEEEEEEecCCCCCceEEEEECCcEeecc-------c-------CCceEEECcCCcccCEEEEEEEEeCCC
Confidence            456789999999999665 55789999987554211       0       235689999999999999999999533

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A

Probab=99.18  E-value=2.6e-10  Score=56.32  Aligned_cols=64  Identities=13%  Similarity=0.185  Sum_probs=49.9

Q ss_pred             eeecCCCcEEEEEEee-ecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCc
Q psy4613          11 VGAPIDTDVTLECYVE-AYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGE   88 (96)
Q Consensus        11 ~~~~~g~~~~l~c~~~-~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~   88 (96)
                      ..+..|..+.|.|.+. +.+.+.+.|++++..+....              ....|.|.++...|.|.|.|.+.|..|.
T Consensus        95 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~--------------~~~~L~i~~v~~~d~G~Y~C~a~n~~g~  159 (170)
T 3ry4_A           95 LEFQEGETIMLRCHSWKDKPLVKVTFFQNGKSQKFSH--------------LDPTFSIPQANHSHSGDYHCTGNIGYTL  159 (170)
T ss_dssp             SEECTTCCEEEEEEEGGGCCEEEEEEEETTEEEEEES--------------SCCEEEESSCCGGGCEEEEEEEEETTEE
T ss_pred             ceeecCCeEEEEEECCCCCCCceEEEEECCeEccccC--------------CCCeEEEEeccccCCEEEEEEEEeCcCc
Confidence            4567899999999984 45668999999865543111              1256899999999999999999998875

>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ...

Probab=99.18  E-value=6.9e-10  Score=56.63  Aligned_cols=78  Identities=21%  Similarity=0.260  Sum_probs=54.7

Q ss_pred             EEecCceeeecCCCcEEEEEEeeecc---cceeEEeecc--cee--Ee---------cccceEEEEeccccceEEEEEEE
Q psy4613           4 IHVPNQLVGAPIDTDVTLECYVEAYP---KSINYWVRDQ--GDM--VI---------SSERYEVESISRSIFDFKMRLTI   67 (96)
Q Consensus         4 ~~~~~~~~~~~~g~~~~l~c~~~~~~---~~~~~w~~~~--~~~--~~---------~~~~~~~~~~~~~~~~~~~~l~i   67 (96)
                      +.. +..+.+..|+.+.|.|.+.+.+   .+.+.|+++.  ...  ..         ...++.....     .....|.|
T Consensus         4 v~~-p~~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-----~~~~~L~I   77 (212)
T 1q0x_L            4 VTQ-ESALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLI-----GDKAALTI   77 (212)
T ss_dssp             EEE-CSEEEECTTCCEEEEEEESSSCCCGGGCCEEEEEETTTEEEEEEETTTEECTTCCTTEEEEEE-----TTEEEEEE
T ss_pred             EEC-CCeEeecCCCCEEEEEEecccccCCCCeEEEEEeCCCCCceEEEEcCcccCCcccccEEEEee-----CCEEEEEE
Confidence            444 6677899999999999998876   4789998853  121  10         0123332210     02357999


Q ss_pred             ccCCCCCCeeEEEEEecCCC
Q psy4613          68 KKITKYDLGSYKCIAKNSLG   87 (96)
Q Consensus        68 ~~~~~~d~g~y~c~~~~~~g   87 (96)
                      .+++..|.|.|.|.+.+..+
T Consensus        78 ~~v~~~D~G~Y~C~~~~~~~   97 (212)
T 1q0x_L           78 TGAQTEDEAIYFCALWSNNK   97 (212)
T ss_dssp             SSCCGGGCEEEEEEEECSSC
T ss_pred             CCCCccCCEEEEEEEecCch
Confidence            99999999999999998755

>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}

Probab=99.18  E-value=2.1e-11  Score=65.35  Aligned_cols=74  Identities=23%  Similarity=0.224  Sum_probs=55.6

Q ss_pred             eeecCCCcEEEEEEeeecccc-eeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCce
Q psy4613          11 VGAPIDTDVTLECYVEAYPKS-INYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEV   89 (96)
Q Consensus        11 ~~~~~g~~~~l~c~~~~~~~~-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~   89 (96)
                      ..+..|..+.|.|.+.+.|.| .+.|++++..+... ...   .       ....+.|..++..|.|.|.|.+.|..|..
T Consensus       222 ~~~~~g~~v~l~C~~~g~P~p~~v~W~k~~~~~~~~-~~~---~-------~~~~l~i~~v~~~d~G~Y~C~A~N~~G~~  290 (308)
T 4fom_A          222 NWFVGRKGVNLKCNADANPPPFKSVWSRLDGQWPDG-LLA---S-------DNTLHFVHPLTFNYSGVYICKVTNSLGQR  290 (308)
T ss_dssp             CEETTCCSCEEECCEEEESCEEEEECCBSSSCCCSS-CBC---S-------TTEEECCSCCCSCCCSEEEEEEEETTEEE
T ss_pred             eeeeccccEEEEEEEecCCCCcEEEEEECCeECCCc-EEE---c-------CCeEEEECCCChhhCEEEEEEEEeCCCcE
Confidence            445678899999999999988 68999986554311 100   0       12456678899999999999999999988


Q ss_pred             EEEEEe
Q psy4613          90 ESSIRL   95 (96)
Q Consensus        90 ~~~~~l   95 (96)
                      ...+.|
T Consensus       291 ~~~~~l  296 (308)
T 4fom_A          291 SDQKVI  296 (308)
T ss_dssp             EEEEEC
T ss_pred             EEEEEE
Confidence            777665

>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L

Probab=99.18  E-value=5.1e-10  Score=58.65  Aligned_cols=79  Identities=14%  Similarity=0.307  Sum_probs=54.8

Q ss_pred             EEecCceeeecCCCcEEEEEEeeecc-----cceeEEeeccc--e--eEec---------ccceEEEEeccccceEEEEE
Q psy4613           4 IHVPNQLVGAPIDTDVTLECYVEAYP-----KSINYWVRDQG--D--MVIS---------SERYEVESISRSIFDFKMRL   65 (96)
Q Consensus         4 ~~~~~~~~~~~~g~~~~l~c~~~~~~-----~~~~~w~~~~~--~--~~~~---------~~~~~~~~~~~~~~~~~~~l   65 (96)
                      +..++..+.+..|+.+.|.|.+.+.+     .+.+.|++++.  .  ....         ..++.....     .....|
T Consensus        37 v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-----~~~~~L  111 (252)
T 3bkj_L           37 MTQTPLSLPVNLGEQASISCRSSQSIVHSNGHTYLEWYLQRPGQSPKLLIYQVSTRFSGVPDRFSGSGS-----GTDFTL  111 (252)
T ss_dssp             EEEECSEEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEE-----TTEEEE
T ss_pred             EEeCCceEEEeCCCcEEEEEEcCCCccccCCCCcEEEEEECCCCCcEEEEEcCCcccCCcCCceEEEcc-----CCEEEE
Confidence            44556667789999999999998876     57899998531  1  1100         123332210     023579


Q ss_pred             EEccCCCCCCeeEEEEEecCCC
Q psy4613          66 TIKKITKYDLGSYKCIAKNSLG   87 (96)
Q Consensus        66 ~i~~~~~~d~g~y~c~~~~~~g   87 (96)
                      .|.+++..|.|.|.|.+.+..+
T Consensus       112 ~I~~v~~~D~G~Y~C~~~~~~~  133 (252)
T 3bkj_L          112 RISRVEAEDLGVYYCFQASLVP  133 (252)
T ss_dssp             EESSCCGGGCEEEEEEECSBSS
T ss_pred             EECCCCcccCEEEEEEEEcCCc
Confidence            9999999999999999988644

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*

Probab=99.18  E-value=1.3e-11  Score=67.16  Aligned_cols=84  Identities=21%  Similarity=0.272  Sum_probs=36.7

Q ss_pred             eecCCCcEEEEEEee----ecccceeEEeeccceeEecccceEEEE----eccccceEEEEEEEccCCCCCC-eeEEEEE
Q psy4613          12 GAPIDTDVTLECYVE----AYPKSINYWVRDQGDMVISSERYEVES----ISRSIFDFKMRLTIKKITKYDL-GSYKCIA   82 (96)
Q Consensus        12 ~~~~g~~~~l~c~~~----~~~~~~~~w~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~i~~~~~~d~-g~y~c~~   82 (96)
                      .+..|..+.|.|.+.    +.|.+.+.|++++..+.....+.....    ...........|.|.++...|. |.|.|.+
T Consensus       237 ~v~~G~~v~l~C~~~~~~~g~p~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~a  316 (349)
T 4dep_C          237 EKEPGEELLIPCTVYFSFLMDSRNEVWWTIDGKKPDDITIDVTINESISHSRTEDETRTQILSIKKVTSEDLKRSYVCHA  316 (349)
T ss_dssp             --------CCCEEEEECCCTTCCCEEEEESSCC--------CCCCEEEECCTTCCEEEEECC-------------CEEEE
T ss_pred             EEecCCcEEEEEEEEEccCCCCCCEEEEEECCEEccccCCccccccceeeecCCCcEEEEEEEEeeccHHHcCCcEEEEE
Confidence            677899999999998    457889999998765432111111100    0001111345699999999999 9999999


Q ss_pred             ecCCCceEEEEEe
Q psy4613          83 KNSLGEVESSIRL   95 (96)
Q Consensus        83 ~~~~g~~~~~~~l   95 (96)
                      .|..|.....+.|
T Consensus       317 ~N~~G~~~~~~~l  329 (349)
T 4dep_C          317 RSAKGEVAKAAKV  329 (349)
T ss_dssp             ECSSCEEEEECC-
T ss_pred             EcCCCcEEEEEEE
Confidence            9999987766543

>1p4b_L Antibody variable light chain; FV antibody, antigen peptide binder, SCFV, picomolar binder, immune system; 2.35A {Mus musculus} SCOP: b.1.1.1 PDB: 1p4i_L

Probab=99.18  E-value=1.1e-09  Score=52.81  Aligned_cols=77  Identities=23%  Similarity=0.291  Sum_probs=52.6

Q ss_pred             eEEecCceeeecCCCcEEEEEEeeecc---cceeEEeeccc----eeEec---------ccceEEEEeccccceEEEEEE
Q psy4613           3 VIHVPNQLVGAPIDTDVTLECYVEAYP---KSINYWVRDQG----DMVIS---------SERYEVESISRSIFDFKMRLT   66 (96)
Q Consensus         3 ~~~~~~~~~~~~~g~~~~l~c~~~~~~---~~~~~w~~~~~----~~~~~---------~~~~~~~~~~~~~~~~~~~l~   66 (96)
                      .+..++. +.+.+|++++|.|.+...+   .+.+.|++...    ..+..         ..++.....     .....|.
T Consensus         8 ~v~q~~~-v~v~~G~~vtL~C~~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~Rf~~~~~-----~~~~sL~   81 (135)
T 1p4b_L            8 VVTQESA-LTTSPGETVTLTCRSSTGAVTTSNYASWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLI-----GDKAALT   81 (135)
T ss_dssp             CEECCSE-EEECTTCEEEEEEEETTSSCCGGGCCEEEEEEGGGEEEEEEETTTEECTTCCTTEEEEEE-----TTEEEEE
T ss_pred             eEEECCc-EEEcCCCCEEEEEEecCCCcCCCCEEEEEEECCCCCCEEEEEeCCccCCCCCCCEEEEcC-----CCEEEEE
Confidence            3455554 8899999999999987654   56899997532    11110         123332210     0235799


Q ss_pred             EccCCCCCCeeEEEEEecC
Q psy4613          67 IKKITKYDLGSYKCIAKNS   85 (96)
Q Consensus        67 i~~~~~~d~g~y~c~~~~~   85 (96)
                      |.+++..|+|.|.|.+.+.
T Consensus        82 I~~v~~~DsG~Y~C~~~~~  100 (135)
T 1p4b_L           82 ITGAQTEDEAIYFCALWYS  100 (135)
T ss_dssp             EESCCGGGCEEEEEEEECS
T ss_pred             ECCCChhHCEEEEEEEecC
Confidence            9999999999999999865

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A

Probab=99.17  E-value=6.9e-11  Score=64.95  Aligned_cols=80  Identities=29%  Similarity=0.471  Sum_probs=59.2

Q ss_pred             CCeEEecCceeee---cCCCcEEEEEEeeecccceeEEeeccceeEec-ccceEEEEeccccceEEEEEEEccCCC-CCC
Q psy4613           1 HPVIHVPNQLVGA---PIDTDVTLECYVEAYPKSINYWVRDQGDMVIS-SERYEVESISRSIFDFKMRLTIKKITK-YDL   75 (96)
Q Consensus         1 ~p~~~~~~~~~~~---~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~-~d~   75 (96)
                      +|.+...+.....   ..|+.+.|.|.+.+.|.+.+.|++++..+... ..++...         ...|.|.++.. .|.
T Consensus         4 ~P~~~~~p~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~k~g~~~~~~~~~~~~~~---------~~~L~i~~~~~~~D~   74 (382)
T 1cs6_A            4 GPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLV---------AGDLVISNPVKAKDA   74 (382)
T ss_dssp             EEEEEECCCCEEEETTCSCCEEEECCEEEEESCCEEEEEETTEECCCSTTSSEEEE---------TTEEEEESCCHHHHC
T ss_pred             CCEEEECCCcEEEecCCCCCcEEEEEEecCCCCCEEEEEECCEECCcCCCccEEee---------CCeEEEecccccccC
Confidence            3666666655554   68999999999999899999999987655322 2333322         24688888886 999


Q ss_pred             eeEEEEEecCCCce
Q psy4613          76 GSYKCIAKNSLGEV   89 (96)
Q Consensus        76 g~y~c~~~~~~g~~   89 (96)
                      |.|.|.+.+..|..
T Consensus        75 G~Y~C~a~n~~g~~   88 (382)
T 1cs6_A           75 GSYQCVATNARGTV   88 (382)
T ss_dssp             EEEEEEEEETTEEE
T ss_pred             EEEEEEEEcCCcEE
Confidence            99999999987743

>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B

Probab=99.17  E-value=8.8e-10  Score=55.87  Aligned_cols=76  Identities=13%  Similarity=0.153  Sum_probs=54.9

Q ss_pred             eecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCceEE
Q psy4613          12 GAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVES   91 (96)
Q Consensus        12 ~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~~~   91 (96)
                      .+..|..+.|.|.+.+.|.|.+.|++++.....     ...... ..  ....+.+..+...|.|.|.|.+.|..|....
T Consensus       114 ~~~~g~~v~l~C~~~g~P~p~v~W~~~~~~~~~-----~~~~~~-~~--~~~~~~i~~v~~~d~G~Y~C~a~N~~g~~~~  185 (202)
T 3bp6_B          114 EVPGTGEVQLTCQARGYPLAEVSWQNVSVPANT-----SHIRTP-EG--LYQVTSVLRLKPQPSRNFSCMFWNAHMKELT  185 (202)
T ss_dssp             ECTTTCCEEEEEEEEEBSCCEEEETTCCSCCEE-----EEEECT-TS--CEEEEEEEEECCCTTCCEEEEEEETTTTEEE
T ss_pred             ecCCCCeEEEEEEccccCCceEEEEeCCCCccC-----ceeeCC-CC--CEEEEEEEEEEcCCCCEEEEEEEcCCccccc
Confidence            456899999999999999999999987543321     011111 11  1244567778888999999999999998877


Q ss_pred             EEEe
Q psy4613          92 SIRL   95 (96)
Q Consensus        92 ~~~l   95 (96)
                      .+.|
T Consensus       186 ~~~l  189 (202)
T 3bp6_B          186 SAII  189 (202)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            7655

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}

Probab=99.17  E-value=1.5e-09  Score=58.05  Aligned_cols=76  Identities=11%  Similarity=0.130  Sum_probs=56.4

Q ss_pred             eeeecCCCcEEEEEEee-ecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCc
Q psy4613          10 LVGAPIDTDVTLECYVE-AYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGE   88 (96)
Q Consensus        10 ~~~~~~g~~~~l~c~~~-~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~   88 (96)
                      ...+..|+.+.|.|.+. +.|.+.+.|++++..+. ...++........   ....|.|.++...|.|.|.|.+.+..+.
T Consensus       116 ~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~i~-~~~~~~~~~~~~~---~~~~L~i~~~~~~d~G~Y~C~~~~~~~~  191 (312)
T 2y23_A          116 AVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIF-EGPKYKMHIDRNT---GIIEMFMEKLQDEDEGTYTFQLQDGKAT  191 (312)
T ss_dssp             EEEECSSSCEEEEEEESCCCSSCEEEEEETTEEEC-SSSSCEEEEETTT---TEEEEEESCCCGGGCEEEEEEEESSSCE
T ss_pred             ceEEeeCCCEEEEEEEEeCCCCCEEEEEECCEECe-eCCcEEEEEccCC---CEEEEEEccCCcccCEeEEEEEEeCCce
Confidence            56788899999999998 78899999999876543 3344444332111   2356999999999999999999875544


Q ss_pred             e
Q psy4613          89 V   89 (96)
Q Consensus        89 ~   89 (96)
                      .
T Consensus       192 ~  192 (312)
T 2y23_A          192 N  192 (312)
T ss_dssp             E
T ss_pred             E
Confidence            3

>1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ...

Probab=99.17  E-value=8.3e-10  Score=56.78  Aligned_cols=76  Identities=16%  Similarity=0.297  Sum_probs=51.6

Q ss_pred             ecCCCcEEEEEEeeec-ccc-eeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCceE
Q psy4613          13 APIDTDVTLECYVEAY-PKS-INYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVE   90 (96)
Q Consensus        13 ~~~g~~~~l~c~~~~~-~~~-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~~   90 (96)
                      +..|..+.|.|.+.+. |.| .+.|++++..+...  ...... ....+...+.|.|......| |.|.|.+.|..|...
T Consensus       139 ~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~~~~~~--~~~~~~-~~~~~~~~s~L~i~~~~~~d-g~y~C~a~n~~~~~~  214 (222)
T 1q9r_B          139 AQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVH--TFPAVL-QSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTK  214 (222)
T ss_dssp             CCCSSEEEEEEEEEEEBSSCCEEEEGGGTBCTTEE--EEEEEE-ETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTEE
T ss_pred             ccCCCcEEEEEEEccEECCCCEEEEecCCeEcceE--eccccc-cCCcEEEEEEEEECchhcCC-CeEEEEEEccCCCCc
Confidence            4578999999999985 888 99999886443111  111110 11122244678998888889 999999999888654


Q ss_pred             EE
Q psy4613          91 SS   92 (96)
Q Consensus        91 ~~   92 (96)
                      ..
T Consensus       215 ~~  216 (222)
T 1q9r_B          215 VD  216 (222)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>3kg5_A B-cell antigen receptor complex-associated protei chain; CD79B, IG-beta, BCR, immunoglobulin domain, protein binding; 3.20A {Homo sapiens}

Probab=99.16  E-value=1.2e-09  Score=52.64  Aligned_cols=75  Identities=20%  Similarity=0.301  Sum_probs=54.2

Q ss_pred             EecCceeeecCCCcEEEEEEeeecccceeEEeec---cceeE---ecccceEEEEeccccceEEEEEEEccCCCCCCeeE
Q psy4613           5 HVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRD---QGDMV---ISSERYEVESISRSIFDFKMRLTIKKITKYDLGSY   78 (96)
Q Consensus         5 ~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~---~~~~~---~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y   78 (96)
                      ...+..+.+..|++++|.|...+. ...+.|++.   +..+.   ....++.....     .....|.|.+++.+|+|.|
T Consensus        22 ~Q~p~~~~v~~G~svtL~C~~s~~-~~~v~Wyrq~~~g~~~~~l~~~~~rf~~~~~-----~~~~~L~I~~~~~~Dsg~Y   95 (134)
T 3kg5_A           22 WQSPRFIARKRGFTVKMHCYMNSA-SGNVSWLWKQEMDENPQQLKLEKGRMEESQN-----ESLATLTIQGIRFEDNGIY   95 (134)
T ss_dssp             EEECSEEEEETTCCEEEEEECCCT-TCCCEEEEESSSSSCCEECCCCTTTEEEEEC-----SSEEEEEECSCCTTTCEEE
T ss_pred             EEeCCEEEEeCCCCEEEEEEECCC-CceEEEEEECCCCCCcEEEEEECCeEEEEcc-----CCEEEEEECCCCcCcCEEE
Confidence            345566789999999999998764 578899987   22221   12345544321     1346899999999999999


Q ss_pred             EEEEecC
Q psy4613          79 KCIAKNS   85 (96)
Q Consensus        79 ~c~~~~~   85 (96)
                      .|.+.+.
T Consensus        96 ~C~~~~~  102 (134)
T 3kg5_A           96 FCQQKCN  102 (134)
T ss_dssp             EEEEECT
T ss_pred             EEEEEcC
Confidence            9999875

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*

Probab=99.16  E-value=8.2e-11  Score=64.93  Aligned_cols=76  Identities=26%  Similarity=0.525  Sum_probs=58.2

Q ss_pred             eeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCceE
Q psy4613          11 VGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVE   90 (96)
Q Consensus        11 ~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~~   90 (96)
                      ..+..|..+.|.|.+.+.|.+.+.|++++..+..  .......       ....|.|.++...|.|.|.|.+.|..|...
T Consensus       232 ~~~~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~--~~~~~~~-------~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~  302 (404)
T 3p3y_A          232 QMVLRGMDLLLECIASGVPTPDIAWYKKGGDLPS--DKAKFEN-------FNKALRITNVSEEDSGEYFCLASNKMGSIR  302 (404)
T ss_dssp             EEEETTSCEEEECCBCCSSCCEEEEEETTBCCCT--TTEEEEG-------GGTEEEESSCCGGGCEEEEEEEECSSCEEE
T ss_pred             ceEecCCCEEEEEEECCCCCCcEEEEECCEECCC--Ccccccc-------cCceEEEccCCHhHCEEEEEEEEeCCCcEE
Confidence            4577899999999999999999999998765532  1212211       125799999999999999999999988766


Q ss_pred             EEEEe
Q psy4613          91 SSIRL   95 (96)
Q Consensus        91 ~~~~l   95 (96)
                      ..+.|
T Consensus       303 ~~~~l  307 (404)
T 3p3y_A          303 HTISV  307 (404)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            55543

>3udw_C Poliovirus receptor; PVR tigit IGSF signal transduction immunology, IGSF, cell SU receptor signalling, glycosylation, membrane protein; HET: NAG; 2.90A {Homo sapiens}

Probab=99.16  E-value=2.5e-10  Score=53.33  Aligned_cols=88  Identities=24%  Similarity=0.365  Sum_probs=53.8

Q ss_pred             EecCceeeecCCCcEEEEEEeee-cccc----eeEEeecccee--Ee--c--------ccceEEEEeccccce--EEEEE
Q psy4613           5 HVPNQLVGAPIDTDVTLECYVEA-YPKS----INYWVRDQGDM--VI--S--------SERYEVESISRSIFD--FKMRL   65 (96)
Q Consensus         5 ~~~~~~~~~~~g~~~~l~c~~~~-~~~~----~~~w~~~~~~~--~~--~--------~~~~~~~~~~~~~~~--~~~~l   65 (96)
                      ..+.. +.+..|+.+.|.|.+.. .+.+    .+.|++.+...  ..  .        ..+..+..  .....  ....|
T Consensus         5 ~~p~~-v~~~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~~~~~sL   81 (118)
T 3udw_C            5 QAPTQ-VPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVA--ARLGAELRNASL   81 (118)
T ss_dssp             ECCSE-EEEETTSCEEECCEEECCTTCCCEEEEEEEEETTCSBCSEEEETTTEEEETTCSSEEETT--CCTTSCCCBCCE
T ss_pred             eCCCe-EEEeeCCcEEEEEEeECCCCCCCceEEEEEEEcCCCceEEEEeCCCCCccCCcCcEEEec--ccccCCCCCcEE
Confidence            33444 77899999999999853 3333    48999873221  10  0        11111110  00000  04579


Q ss_pred             EEccCCCCCCeeEEEEEec-CCCceEEEEEe
Q psy4613          66 TIKKITKYDLGSYKCIAKN-SLGEVESSIRL   95 (96)
Q Consensus        66 ~i~~~~~~d~g~y~c~~~~-~~g~~~~~~~l   95 (96)
                      .|.+++..|.|.|.|.+.+ ..+.....+.|
T Consensus        82 ~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~~L  112 (118)
T 3udw_C           82 RMFGLRVEDEGNYTCLFVTFPQGSRSVDIWL  112 (118)
T ss_dssp             EECSCCGGGCEEEEEEEEEETTEEEEEEEEE
T ss_pred             EEeecChHHCeEEEEEEEECCCCCccceEEE
Confidence            9999999999999999988 66655544443

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J

Probab=99.16  E-value=1.2e-09  Score=63.08  Aligned_cols=81  Identities=20%  Similarity=0.172  Sum_probs=56.5

Q ss_pred             CceeeecCCCcEEEEEEee----ecccceeEEeeccceeEecccceE---EEEeccccceEEEEEEEccCCCCCCeeEEE
Q psy4613           8 NQLVGAPIDTDVTLECYVE----AYPKSINYWVRDQGDMVISSERYE---VESISRSIFDFKMRLTIKKITKYDLGSYKC   80 (96)
Q Consensus         8 ~~~~~~~~g~~~~l~c~~~----~~~~~~~~w~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c   80 (96)
                      +....+..|..+.|.|.+.    +.|.+.+.|++++..+........   +....  .......|.|.++...|.|.|.|
T Consensus       449 ~~~~~v~~G~~v~L~C~~~~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~~--~~~~~~~L~i~~v~~~d~G~Y~C  526 (585)
T 2ocw_A          449 PGNVTAVLGETLKVPCHFPCKFSSYEKYWCKWNNTGCQALPSQDEGPSKAFVNCD--ENSRLVSLTLNLVTRADEGWYWC  526 (585)
T ss_pred             CCceeEecCCcEEEEEEecCCCCCCccEEEEEeecCceeeeccCCCCCcceEEec--CcccEEEEEECCCCcccCeEEEE
Confidence            3455688899999999986    667788999998766543211100   11100  01123689999999999999999


Q ss_pred             EEecCCCceE
Q psy4613          81 IAKNSLGEVE   90 (96)
Q Consensus        81 ~~~~~~g~~~   90 (96)
                      .+.|..|...
T Consensus       527 ~a~N~~G~~~  536 (585)
T 2ocw_A          527 GVKQGHFYGE  536 (585)
T ss_pred             EeEeCCCccE
Confidence            9999987544

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}

Probab=99.16  E-value=6.1e-11  Score=60.03  Aligned_cols=72  Identities=10%  Similarity=0.026  Sum_probs=42.8

Q ss_pred             eeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCC
Q psy4613          11 VGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLG   87 (96)
Q Consensus        11 ~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g   87 (96)
                      ..+..|+.+.|.|.+.+.+ +.+.|++++..+.....  ......  .......|.|.+++..|.|.|.|.+.+..+
T Consensus       109 ~~v~~G~~v~L~C~~~~~p-~~~~W~k~g~~~~~~~~--~~~~~~--~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~  180 (196)
T 2d3v_A          109 PVVTSGENVTLQCGSRLRF-DRFILTEEGDHKLSWTL--DSQLTP--SGQFQALFPVGPVTPSHRWMLRCYGSRRHI  180 (196)
T ss_dssp             --------CEEEEEESSCC-SEEEEEEC---CCEEEE--ECEECT--TSCEEEEEECCCCBTTBCEEEEEEEEETTE
T ss_pred             ccccCCCcEEEEEEcCCCC-CEEEEEccCCccccccc--cccccc--CCCceeEEEeeecCcccCeeEEEEEEccCC
Confidence            3577899999999999887 89999998755421100  000000  001346799999999999999999998654

>2otu_A FV light chain variable domain; antibody FV polyglutamine complex, immune system; 1.68A {Mus musculus} PDB: 2otw_A 2gsg_A

Probab=99.15  E-value=2.9e-09  Score=49.83  Aligned_cols=77  Identities=17%  Similarity=0.274  Sum_probs=52.0

Q ss_pred             EEecCceeeecCCCcEEEEEEeeec-ccceeEEeecc----ceeE-e-c-----------ccceEEEEeccccceEEEEE
Q psy4613           4 IHVPNQLVGAPIDTDVTLECYVEAY-PKSINYWVRDQ----GDMV-I-S-----------SERYEVESISRSIFDFKMRL   65 (96)
Q Consensus         4 ~~~~~~~~~~~~g~~~~l~c~~~~~-~~~~~~w~~~~----~~~~-~-~-----------~~~~~~~~~~~~~~~~~~~l   65 (96)
                      +.. +..+.+..|++++|.|.+.+. +...+.|++..    ...+ . .           ..++.....     .....|
T Consensus         5 v~q-p~~~~~~~G~~v~L~C~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~-----~~~~~L   78 (115)
T 2otu_A            5 LTQ-SSSASFSLGASAKLTCTLSSQHSTYTIEWYQQQPLKPPKYVMELKKDGSHSTGDGIPDRFSGSSS-----GADRYL   78 (115)
T ss_dssp             EEE-CCCEECCTTCCEEEEEEECGGGTTCCEEEEEECTTSCCEEEEEECTTSCEEECTTCCTTEEEEEE-----TTEEEE
T ss_pred             EEc-CCCEEECCCCCEEEEEEecCCCCCeEEEEEEeCCCCCceEEEEEecCCceecCcccCCCEEEEcc-----CCEEEE
Confidence            445 566788999999999998765 46689998742    1111 1 0           112222210     123579


Q ss_pred             EEccCCCCCCeeEEEEEecCC
Q psy4613          66 TIKKITKYDLGSYKCIAKNSL   86 (96)
Q Consensus        66 ~i~~~~~~d~g~y~c~~~~~~   86 (96)
                      .|.+++.+|+|.|.|.+.+..
T Consensus        79 ~I~~~~~~Dsg~Y~C~~~~~~   99 (115)
T 2otu_A           79 SISNIQPEDEAIYICGVGDTI   99 (115)
T ss_dssp             EESSCCGGGCEEEEEEEEECC
T ss_pred             EECCCChhHCEEEEEEEecCC
Confidence            999999999999999998653

>2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV, immune system; 2.10A {Mus musculus} PDB: 3h3b_C

Probab=99.15  E-value=7.9e-10  Score=58.46  Aligned_cols=81  Identities=20%  Similarity=0.334  Sum_probs=57.0

Q ss_pred             CeEEecCceeeecCCCcEEEEEEeeecc------cceeEEeecc--ce--eEec---------ccceEEEEeccccceEE
Q psy4613           2 PVIHVPNQLVGAPIDTDVTLECYVEAYP------KSINYWVRDQ--GD--MVIS---------SERYEVESISRSIFDFK   62 (96)
Q Consensus         2 p~~~~~~~~~~~~~g~~~~l~c~~~~~~------~~~~~w~~~~--~~--~~~~---------~~~~~~~~~~~~~~~~~   62 (96)
                      +.+...+..+.+..|+.+.|.|.+.+.+      .+.+.|++..  ..  .+..         ..++.....     ...
T Consensus         6 ~~v~q~p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~R~~~~~~-----~~~   80 (264)
T 2gjj_A            6 IVLTQTPSSLPVSVGEKVTMTCKSSQTLLYSNNQKNYLAWYQQKPGQSPKLLISWAFTRKSGVPDRFTGSGS-----GTD   80 (264)
T ss_dssp             CCEEEECSEEEEETTCCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEE-----TTE
T ss_pred             cceEecCCeEEecCCCcEEEEeEcCCcccccccCCceEEEEEECCCCCcEEEEEecccCCCCCCccEEEecC-----CCE
Confidence            3456667778899999999999998876      6789999852  11  1110         123333210     023


Q ss_pred             EEEEEccCCCCCCeeEEEEEecCCC
Q psy4613          63 MRLTIKKITKYDLGSYKCIAKNSLG   87 (96)
Q Consensus        63 ~~l~i~~~~~~d~g~y~c~~~~~~g   87 (96)
                      ..|.|.+++..|.|.|.|.+.+..+
T Consensus        81 ~~L~I~~v~~~DsG~Y~C~~~~~~~  105 (264)
T 2gjj_A           81 FTLTIGSVKAEDLAVYYCQQYSNYP  105 (264)
T ss_dssp             EEEEESSCCGGGCEEEEEEECSSSS
T ss_pred             EEEEECCCCHHHCEEEEEEEecCCc
Confidence            5799999999999999999988643

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}

Probab=99.15  E-value=1.2e-09  Score=62.84  Aligned_cols=78  Identities=10%  Similarity=0.156  Sum_probs=54.6

Q ss_pred             cCceeeecCCCcEEEEEEee-ecccceeEEeeccceeEecccceEEEEec-cccceEEEEEEEccCCCCCCeeEEEEEec
Q psy4613           7 PNQLVGAPIDTDVTLECYVE-AYPKSINYWVRDQGDMVISSERYEVESIS-RSIFDFKMRLTIKKITKYDLGSYKCIAKN   84 (96)
Q Consensus         7 ~~~~~~~~~g~~~~l~c~~~-~~~~~~~~w~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~i~~~~~~d~g~y~c~~~~   84 (96)
                      ++....+..|+.+.|.|.+. +.|.+.+.|++++..+. ........... .........|.|.+++..|.|.|.|.+.|
T Consensus       233 ~p~~~~v~~G~~v~L~C~~~~g~p~p~i~W~k~g~~l~-~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~N  311 (527)
T 3qs9_E          233 TLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALE-EGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSK  311 (527)
T ss_dssp             SCCEEEECTTSCEEEEEEEEESSSCCCEEEECSSSCCC-GGGEEEEEEEETTTEEEEEEEEEESSCCGGGCEEEEEEETT
T ss_pred             CCCceEEeCCCeEEEEEEEccCCCCeEEEEEECCEECC-CCceeeeeeeccCcceeeEEEEEEccCCcccCeEEEEEEEe
Confidence            34556788999999999996 88899999999876543 11111111111 00111346799999999999999999988


Q ss_pred             C
Q psy4613          85 S   85 (96)
Q Consensus        85 ~   85 (96)
                      .
T Consensus       312 ~  312 (527)
T 3qs9_E          312 H  312 (527)
T ss_dssp             E
T ss_pred             C
Confidence            6

>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A

Probab=99.15  E-value=8.8e-11  Score=60.10  Aligned_cols=79  Identities=15%  Similarity=0.196  Sum_probs=49.4

Q ss_pred             cCCCcEEEEEEeee-cccc-eeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCceEE
Q psy4613          14 PIDTDVTLECYVEA-YPKS-INYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVES   91 (96)
Q Consensus        14 ~~g~~~~l~c~~~~-~~~~-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~~~   91 (96)
                      ..+..+.|.|.+.+ .|.+ .+.|++++..+............ ...+...+.|.+......|.|.|.|.+.|..+....
T Consensus       134 ~~~~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~-~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~  212 (218)
T 3s96_B          134 LKENKATLVCLISNFSPSGVTVAWKANGTPITQGVDTSNPTKE-GNKFMASSFLHLTSDQWRSHNSFTCQVTHEGDTVEK  212 (218)
T ss_dssp             HHTTEEEEEEEEEEEBSSCCEEEEEETTEEC---------------CEEEEEEEEEEHHHHHTCSCEEEEEEETTEEEEE
T ss_pred             ccCCcEEEEEEECcccCCCeEEEEEECCEECcCceecCccccc-CCcEEEEEEEEEeHHHccCCCeEEEEEEeCCCcccc
Confidence            44688999999988 4666 89999987655321111111110 112223455778888888899999999998877665


Q ss_pred             EE
Q psy4613          92 SI   93 (96)
Q Consensus        92 ~~   93 (96)
                      .+
T Consensus       213 ~~  214 (218)
T 3s96_B          213 SL  214 (218)
T ss_dssp             EE
T ss_pred             cc
Confidence            54

>1fo0_A Protein (BM3.3 T cell receptor alpha-chain); class I MHC, H-2KB, TCR-PMHC complex, immune system; 2.50A {Mus musculus} SCOP: b.1.1.1 PDB: 1nam_A*

Probab=99.15  E-value=1.2e-09  Score=51.19  Aligned_cols=78  Identities=17%  Similarity=0.302  Sum_probs=53.3

Q ss_pred             EEecCceeeecCCCcEEEEEEeeec-ccceeEEeeccc----eeEe--c--------ccceEEEEeccccceEEEEEEEc
Q psy4613           4 IHVPNQLVGAPIDTDVTLECYVEAY-PKSINYWVRDQG----DMVI--S--------SERYEVESISRSIFDFKMRLTIK   68 (96)
Q Consensus         4 ~~~~~~~~~~~~g~~~~l~c~~~~~-~~~~~~w~~~~~----~~~~--~--------~~~~~~~~~~~~~~~~~~~l~i~   68 (96)
                      +...+..+.+..|++++|.|.+.+. ..+.+.|++...    ..+.  .        ..++.+....   ......|.|.
T Consensus         3 v~q~p~~~~~~~G~~vtL~C~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~R~~~~~~~---~~~~~~L~I~   79 (116)
T 1fo0_A            3 VTQTQTSISVMEKTTVTMDCVYETQDSSYFLFWYKQTASGEIVFLIRQDSYKKENATVGHYSLNFQK---PKSSIGLIIT   79 (116)
T ss_dssp             EECCCCEEEEETTCCEEECCEECCCCSSCEEEEEEECTTCCEEEEEEEETTCCSCCEETTEEEEEEG---GGTEEEEEEC
T ss_pred             cCcCCCcEEEecCCcEEEEeEecCCCCCeEEEEEEeCCCCCeEEEEEEccCCcCcccCCcEEEEEeC---CCCEEEEEEC
Confidence            4556677889999999999998776 555899987531    1111  0        1233322111   1124679999


Q ss_pred             cCCCCCCeeEEEEEec
Q psy4613          69 KITKYDLGSYKCIAKN   84 (96)
Q Consensus        69 ~~~~~d~g~y~c~~~~   84 (96)
                      +++.+|+|.|.|.+.+
T Consensus        80 ~~~~~DsG~Y~C~~~~   95 (116)
T 1fo0_A           80 ATQIEDSAVYFCAMRG   95 (116)
T ss_dssp             SCCGGGCEEEEEEEEC
T ss_pred             CCChhhCEEEEEEEEc
Confidence            9999999999999987

>1fo0_B Protein (BM3.3 T cell receptor beta-chain); class I MHC, H-2KB, TCR-PMHC complex, immune system; 2.50A {Mus musculus} SCOP: b.1.1.1 PDB: 1nam_B* 2ol3_B* 1kb5_B 1kj2_B*

Probab=99.15  E-value=1.2e-09  Score=51.01  Aligned_cols=77  Identities=12%  Similarity=0.180  Sum_probs=52.1

Q ss_pred             eEEecCceeeecCCCcEEEEEEeeecccceeEEeeccc----eeEe-c-c-----------cceEEEEeccccceEEEEE
Q psy4613           3 VIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQG----DMVI-S-S-----------ERYEVESISRSIFDFKMRL   65 (96)
Q Consensus         3 ~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~----~~~~-~-~-----------~~~~~~~~~~~~~~~~~~l   65 (96)
                      .+...+..+.+..|++++|.|.+.....+.+.|++...    ..+. . .           .++.....     ... .|
T Consensus         3 ~v~q~p~~~~v~~G~~vtL~C~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~Rf~~~~~-----~~~-~L   76 (112)
T 1fo0_B            3 LLEQNPRWRLVPRGQAVNLRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRV-----TDT-EL   76 (112)
T ss_dssp             SEEEECSEEECCTTCCEEEEEEESCTTCCEEEEEEECTTCCEEEEEECCSTTCEEEEEETTEEEEEEEE-----ETT-EE
T ss_pred             cEEeCCCeEEEecCCcEEEEEEeCCCCCceEEEEEECCCCCCEEEEEEeCCCceecCccccCCEEEEcC-----CCC-eE
Confidence            34556677889999999999998765667899997531    1111 1 1           11111100     011 79


Q ss_pred             EEccCCCCCCeeEEEEEecC
Q psy4613          66 TIKKITKYDLGSYKCIAKNS   85 (96)
Q Consensus        66 ~i~~~~~~d~g~y~c~~~~~   85 (96)
                      .|.+++.+|+|.|.|.+.+.
T Consensus        77 ~I~~~~~~Dsg~Y~C~~~~~   96 (112)
T 1fo0_B           77 RLQVANMSQGRTLYCTCSAD   96 (112)
T ss_dssp             EEEEESCCSCEEEEEEEESS
T ss_pred             EEcCCCHhHCEEEEEEEEcC
Confidence            99999999999999999864

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.15  E-value=6.8e-11  Score=63.94  Aligned_cols=87  Identities=22%  Similarity=0.284  Sum_probs=58.6

Q ss_pred             ceeeecCCCcEEEEEEeeecccceeEEee----ccceeEeccc-ceEEEEec--cccceEEEEEEEccCCCCCCeeEEEE
Q psy4613           9 QLVGAPIDTDVTLECYVEAYPKSINYWVR----DQGDMVISSE-RYEVESIS--RSIFDFKMRLTIKKITKYDLGSYKCI   81 (96)
Q Consensus         9 ~~~~~~~g~~~~l~c~~~~~~~~~~~w~~----~~~~~~~~~~-~~~~~~~~--~~~~~~~~~l~i~~~~~~d~g~y~c~   81 (96)
                      ....+..|+.+.|.|.+.+.|.+.+.|++    ++..+..... ........  .........|.|.++...|.|.|.|.
T Consensus       230 ~~~~~~~G~~v~l~C~~~g~p~p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~  309 (334)
T 1ry7_B          230 ANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCL  309 (334)
T ss_dssp             CCEEEESSCCEEECCCCBCSSCEEEEEEECCCGGGCSBCTTSSBCCCCCCCSSCSCSCTTCCCEEECSCCTTSCSEEEEE
T ss_pred             CceEEeCCCCEEEEEEEecCCCCeEEEEECCcCCCccccCCCCeeEEEeecCccccccccccEEEEccCCHHHCEEEEEE
Confidence            44567889999999999999999999998    4333321111 00100000  00000123699999999999999999


Q ss_pred             EecCCCceEEEEEe
Q psy4613          82 AKNSLGEVESSIRL   95 (96)
Q Consensus        82 ~~~~~g~~~~~~~l   95 (96)
                      +.|..|.....+.|
T Consensus       310 a~N~~G~~~~~~~l  323 (334)
T 1ry7_B          310 AGNSIGFSHHSAWL  323 (334)
T ss_dssp             EEESSCCEEEEEEE
T ss_pred             EeCCCCeEEEEEEE
Confidence            99999988777655

>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin, glycosylation, immune system; HET: NAG FUC MAN GAL; 2.13A {Mus musculus}

Probab=99.15  E-value=2.2e-10  Score=58.95  Aligned_cols=75  Identities=13%  Similarity=0.097  Sum_probs=50.8

Q ss_pred             ecCCCcEEEEEEeeec---cc-ceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCc
Q psy4613          13 APIDTDVTLECYVEAY---PK-SINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGE   88 (96)
Q Consensus        13 ~~~g~~~~l~c~~~~~---~~-~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~   88 (96)
                      +..|+.+.|.|.+.+.   +. +.+.|++++..+... ............+.....|.|.+++..|.|.|.|.+.+..+.
T Consensus        23 v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~-~~~~~~~~~~~~~~~~~~L~I~~~~~~D~g~Y~C~~~~~~~~  101 (218)
T 2rgs_A           23 LMISLTPKVTCVVVDVSEDDPDVQISWFVNNVEVHTA-QTQTHREDYNSTIRVVSTLPIQHQDWMSGKEFKCKVNNKDLP  101 (218)
T ss_dssp             HCTTSCCEEEEEEEEECTTSCCEEEEEEETTEEECCC-EEEEEEETTTTEEEEEEEEECCHHHHHTTCCEEEEEEETTCS
T ss_pred             hccCCCeeEEEEEcCCccCCCceEEEEEECCccccCc-ccccccccCCCeEEEEEEEEEcHHHcCCCCeEEEEEECCcCC
Confidence            6789999999999886   33 689999987543211 110011111111223467999999999999999999987664

>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus}

Probab=99.15  E-value=1.1e-09  Score=57.62  Aligned_cols=81  Identities=16%  Similarity=0.323  Sum_probs=53.6

Q ss_pred             eEEecCceeeecCCCcEEEEEEeeecccceeEEeeccc--ee--Eec------------ccceEEEEeccccceEEEEEE
Q psy4613           3 VIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQG--DM--VIS------------SERYEVESISRSIFDFKMRLT   66 (96)
Q Consensus         3 ~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~--~~--~~~------------~~~~~~~~~~~~~~~~~~~l~   66 (96)
                      .+...+....+..|+.++|.|.+.+. .+.+.|++...  ..  ...            ..++.....    ......|.
T Consensus       139 ~v~~~p~~~~v~~G~~v~L~C~~~~~-~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~----~~~~~~L~  213 (256)
T 3tf7_C          139 AVTQSPRNKVTVTGENVTLSCRQTNS-HNYMYWYRQDTGHELRLIYYSYGAGNLQIGDVPDGYKATRT----TQEDFFLT  213 (256)
T ss_dssp             CEEESCSEEEEETTCCEEECEEECSC-CSEEEEEEECTTSCEEEEEEEESTTCCEECSCCTTCEEECC----SSSBCEEE
T ss_pred             EEEecCCEEEEeCCCcEEEEEEcCCC-ceEEEEEEECCCCCeEEEEEEcCCCceecCccCCceEEEeC----CCCeEEEE
Confidence            44555666777899999999999875 77899987421  11  100            111111110    01234799


Q ss_pred             EccCCCCCCeeEEEEEecCCCc
Q psy4613          67 IKKITKYDLGSYKCIAKNSLGE   88 (96)
Q Consensus        67 i~~~~~~d~g~y~c~~~~~~g~   88 (96)
                      |.+++..|+|.|.|.+.+..|.
T Consensus       214 I~~v~~~DsG~Y~C~a~n~~g~  235 (256)
T 3tf7_C          214 LESASPSQTSLYFCASSDAPGQ  235 (256)
T ss_dssp             ESSCCGGGCEEEEEEEEEETTE
T ss_pred             ECCCCHHHCEEEEEEecCCCCc
Confidence            9999999999999999887553

>1nez_G T-cell surface glycoprotein CD8 alpha chain; immune system; HET: NAG; 2.10A {Synthetic} SCOP: b.1.1.1 PDB: 1bqh_G* 3b9k_A* 2atp_A* 2arj_R

Probab=99.14  E-value=3.3e-09  Score=50.65  Aligned_cols=78  Identities=22%  Similarity=0.330  Sum_probs=54.0

Q ss_pred             CeEEecCceeeecCCCcEEEEEEeeecccceeEEeecc--c-----eeEe-c-c--------------cceEE-EEeccc
Q psy4613           2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQ--G-----DMVI-S-S--------------ERYEV-ESISRS   57 (96)
Q Consensus         2 p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~--~-----~~~~-~-~--------------~~~~~-~~~~~~   57 (96)
                      +.+...+..+.+..|++++|.|...+.....+.|++..  .     .++. . .              .++.. ..   .
T Consensus         5 ~~v~Q~p~~~~v~~G~~vtL~C~~s~~~~~~v~WyrQ~~g~~l~~p~~l~~~~~~~~~~~~~~~~~~~~rfs~~~~---~   81 (128)
T 1nez_G            5 PELRIFPKKMDAELGQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSAMRD---T   81 (128)
T ss_dssp             CEEEEESSCEEECTTCCEEEEEEEESCCSSCEEEEEEESSCSSCCCEEEEEECSSSCCEEECTTTTGGGTEEEEEE---T
T ss_pred             CeeEECCCeEEEcCCCCEEEEEEeCccCCCcEEEEEeCCCCCCCCcEEEEEEecccCCceeeccccCCCcEEEEeC---C
Confidence            56677777788999999999999876555789999742  1     1111 1 0              12222 11   1


Q ss_pred             cceEEEEEEEccCCCCCCeeEEEEEec
Q psy4613          58 IFDFKMRLTIKKITKYDLGSYKCIAKN   84 (96)
Q Consensus        58 ~~~~~~~l~i~~~~~~d~g~y~c~~~~   84 (96)
                      .  ....|.|.+++.+|+|.|.|....
T Consensus        82 ~--~~~~L~I~~~~~~Dsg~YyCa~~~  106 (128)
T 1nez_G           82 N--NKYVLTLNKFSKENEGYYFCSVIS  106 (128)
T ss_dssp             T--TEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             C--CEEEEEECCCCHHHCEEEEEEEcC
Confidence            1  235799999999999999999865

>3t0v_A Immunoglobulin variable lambda domain; immunoglobulin fold, fluorogen activation, dimethylindole RE binding protein; HET: 1PE PE3; 1.45A {Homo sapiens} PDB: 3t0w_A* 3t0x_A* 3lrg_A 3lrh_A 2rhe_A

Probab=99.14  E-value=1e-09  Score=52.13  Aligned_cols=79  Identities=19%  Similarity=0.331  Sum_probs=54.4

Q ss_pred             CeEEecCceeeecCCCcEEEEEEeeecc--cceeEEeecc--c--eeEec---------ccceEEEEeccccceEEEEEE
Q psy4613           2 PVIHVPNQLVGAPIDTDVTLECYVEAYP--KSINYWVRDQ--G--DMVIS---------SERYEVESISRSIFDFKMRLT   66 (96)
Q Consensus         2 p~~~~~~~~~~~~~g~~~~l~c~~~~~~--~~~~~w~~~~--~--~~~~~---------~~~~~~~~~~~~~~~~~~~l~   66 (96)
                      |.+..+ ..+.+..|++++|.|...+..  ...+.|++..  .  ..+..         ..++....     ......|.
T Consensus         2 p~v~Qp-~~v~v~~G~~vtL~C~~s~~~~~~~~v~Wyrq~~g~~~~~li~~~~~~~~~~~~Rfs~~~-----~~~~~sL~   75 (123)
T 3t0v_A            2 PVLTQS-PSVSGTPGQKVTIFCSGSSSNVEDNSVYWYQQFPGTTPKVLIYNDDRRSSGVPDRFSGSK-----SGTSASLA   75 (123)
T ss_dssp             CSBEEC-CCEEECTTCCEEEEEECCTTTTTTSCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE-----ETTEEEEE
T ss_pred             CccCcc-CeEEEcCCCCEEEEEecCCCccCCCeEEEEEECCCCCCEEEEEECCcCCCCCcCCEEEEc-----cCCEEEEE
Confidence            667775 467899999999999987654  4689999742  1  11111         12333221     01246799


Q ss_pred             EccCCCCCCeeEEEEEecCC
Q psy4613          67 IKKITKYDLGSYKCIAKNSL   86 (96)
Q Consensus        67 i~~~~~~d~g~y~c~~~~~~   86 (96)
                      |.+++..|+|.|.|.+.+..
T Consensus        76 I~~l~~~DsG~Y~C~~~~~~   95 (123)
T 3t0v_A           76 ISGLRSEDEADYYCLSWDDS   95 (123)
T ss_dssp             ECSCCGGGCEEEEEEEEETT
T ss_pred             ECCCCHHHCEEEEEEEEcCC
Confidence            99999999999999988653

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A

Probab=99.14  E-value=1.1e-09  Score=56.16  Aligned_cols=86  Identities=21%  Similarity=0.350  Sum_probs=55.1

Q ss_pred             EecCceeeecCCCcEEEEEEeeeccc-----ceeEEeeccceeEec--------------ccceEEEEeccccceEEEEE
Q psy4613           5 HVPNQLVGAPIDTDVTLECYVEAYPK-----SINYWVRDQGDMVIS--------------SERYEVESISRSIFDFKMRL   65 (96)
Q Consensus         5 ~~~~~~~~~~~g~~~~l~c~~~~~~~-----~~~~w~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~l   65 (96)
                      ..++..+.+..|+.+.|.|.+.+.+.     ..+.|++++......              ..+..+..  .........|
T Consensus         5 ~~p~~~v~~~~G~~v~L~C~~~~~p~~~~~~~~v~W~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~--~~~~~~~~~L   82 (222)
T 3sbw_C            5 TVPKDLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLK--DQLSLGNAAL   82 (222)
T ss_dssp             BCSCSEEEEETTSCEEEEEECCCCSSCCTTTCEEEEEETTEEEEEEETTEECSSSSCGGGSSSEEECH--HHHTTTEEEE
T ss_pred             ecCCccEEEEcCCcEEEEeEecCCCCCCCccEEEEEEECCcEEEEEeCCccccccccccccCceEEcc--ccccCCEEEE
Confidence            34566778899999999999876553     378999875222110              01111110  0000123579


Q ss_pred             EEccCCCCCCeeEEEEEecCCCceEEEE
Q psy4613          66 TIKKITKYDLGSYKCIAKNSLGEVESSI   93 (96)
Q Consensus        66 ~i~~~~~~d~g~y~c~~~~~~g~~~~~~   93 (96)
                      .|.+++..|.|.|.|.+.+ .+.....+
T Consensus        83 ~I~~v~~~D~G~Y~C~~~~-~~~~~~~~  109 (222)
T 3sbw_C           83 QITDVKLQDAGVYRCMISY-GGADYKRI  109 (222)
T ss_dssp             EESSCCGGGCEEEEEEEES-SSEEEEEE
T ss_pred             EEcCcccccCeEEEEEEEe-CCCceeEE
Confidence            9999999999999999998 44444433

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*

Probab=99.14  E-value=5.1e-10  Score=55.72  Aligned_cols=64  Identities=17%  Similarity=0.119  Sum_probs=49.8

Q ss_pred             eeecCCCcEEEEEEeeeccc-ceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCc
Q psy4613          11 VGAPIDTDVTLECYVEAYPK-SINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGE   88 (96)
Q Consensus        11 ~~~~~g~~~~l~c~~~~~~~-~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~   88 (96)
                      ..+..|..+.|.|.+.+.+. +.+.|++++..+...       .       ....|.|.++...|.|.|.|.+.|..+.
T Consensus        98 ~~~~~g~~~~l~C~~~~~~~~~~~~W~k~g~~~~~~-------~-------~~~~L~i~~v~~~d~G~Y~C~a~n~~~~  162 (175)
T 1fnl_A           98 WVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKYF-------H-------HNSDFHIPKATLKDSGSYFCRGLVGSKN  162 (175)
T ss_dssp             SEEETTCCEEEEEEECTTCCCEEEEEEETTEEEEEE-------E-------ECCCEEESSCCGGGCEEEEEEEEETTEE
T ss_pred             ceecCCCCEEEEEEcCCCCCceEEEEEECCeEccCC-------C-------CCCEEEEcccChhhCeEEEEEEEcCCCC
Confidence            45778999999999987665 499999986554211       0       2357899999999999999999997553

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3

Probab=99.14  E-value=1.6e-10  Score=57.80  Aligned_cols=72  Identities=19%  Similarity=0.219  Sum_probs=51.4

Q ss_pred             eeeecCCCcEEEEEEeee--cccceeEEeeccceeE---------ecccceEEEEeccccceEEEEEEEccCCCCCCeeE
Q psy4613          10 LVGAPIDTDVTLECYVEA--YPKSINYWVRDQGDMV---------ISSERYEVESISRSIFDFKMRLTIKKITKYDLGSY   78 (96)
Q Consensus        10 ~~~~~~g~~~~l~c~~~~--~~~~~~~w~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y   78 (96)
                      .+.+..|+.+.|.|....  .+.+.+.|++++..+.         ....++.+.        ....|.|.+++..|+|.|
T Consensus         5 ~v~~~~G~~v~L~c~~~~~~~~~~~i~W~k~~~~i~~~~~~~~~~~~~~r~~~~--------~~gsL~I~~v~~~D~G~Y   76 (176)
T 1hng_A            5 TVWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEIL--------ANGDLKIKNLTRDDSGTY   76 (176)
T ss_dssp             EEEEETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEEC--------TTSCEEESSCCGGGCEEE
T ss_pred             EEEEEcCCcEEEcCCCCCcccccccEEEEeCCceeEEEcCCCeecCCCCeEEEC--------CCCcEEEcccccccCEEE
Confidence            356788999999995433  5567899999865332         112233221        123499999999999999


Q ss_pred             EEEEecCCCce
Q psy4613          79 KCIAKNSLGEV   89 (96)
Q Consensus        79 ~c~~~~~~g~~   89 (96)
                      .|.+.+..|..
T Consensus        77 ~C~~~n~~g~~   87 (176)
T 1hng_A           77 NVTVYSTNGTR   87 (176)
T ss_dssp             EEEEEETTCCE
T ss_pred             EEEEEeCCCCE
Confidence            99999988875

>3rrq_A Protein PD-1, programmed cell death protein 1; programmed death-1, costimulatory, immune system; 2.10A {Homo sapiens}

Probab=99.14  E-value=9.7e-10  Score=52.52  Aligned_cols=81  Identities=16%  Similarity=0.271  Sum_probs=54.0

Q ss_pred             EecCceeeecCCCcEEEEEEeeecc-cceeEEeeccc----eeE-ec---------ccceEEEEeccccceEEEEEEEcc
Q psy4613           5 HVPNQLVGAPIDTDVTLECYVEAYP-KSINYWVRDQG----DMV-IS---------SERYEVESISRSIFDFKMRLTIKK   69 (96)
Q Consensus         5 ~~~~~~~~~~~g~~~~l~c~~~~~~-~~~~~w~~~~~----~~~-~~---------~~~~~~~~~~~~~~~~~~~l~i~~   69 (96)
                      ...+..+.+..|++++|.|.+.+.. ...+.|++...    ..+ ..         ..++.+....   ......|.|.+
T Consensus         5 ~Q~P~~~~v~~G~~vtL~C~~s~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~Rf~~~~~~---~~~~~sL~I~~   81 (129)
T 3rrq_A            5 TFSPALLVVTEGDNATFTCSFSNTSESFVLNWYRMSPSNQTDKLAAFPEDRSQPGQDCRFRVTQLP---NGRDFHMSVVR   81 (129)
T ss_dssp             EEECSEEEEETTSCEEEEEECCCCC-CEEEEEEEEESTTSCEEEEEETC--------CCEEEEECT---TSSEEEEEESS
T ss_pred             EECCCEEEEeCCCCEEEEeEecCCCCCcEEEEeEeCCCCCccEEEEEcCCccCCCcCCcEEEEEcC---CCCEEEEEECC
Confidence            3456678899999999999987754 45789987421    111 11         1233222111   11246899999


Q ss_pred             CCCCCCeeEEEEEecCCCc
Q psy4613          70 ITKYDLGSYKCIAKNSLGE   88 (96)
Q Consensus        70 ~~~~d~g~y~c~~~~~~g~   88 (96)
                      ++..|+|.|.|.+.+..+.
T Consensus        82 ~~~~Dsg~Y~C~~~~~~~~  100 (129)
T 3rrq_A           82 ARRNDSGTYLCGAISLAPK  100 (129)
T ss_dssp             CCGGGCEEEEEEEEECGGG
T ss_pred             CChhHCEEEEEEEEecCCC
Confidence            9999999999999886553

>2q87_A CMRF35-H antigen; all-beta, immunoglobulin, IG-superfamily, IG-V, NKP44-like, natural killer cell IG-like receptor, inhibitory receptor; 1.70A {Homo sapiens}

Probab=99.13  E-value=2.6e-09  Score=49.56  Aligned_cols=75  Identities=20%  Similarity=0.430  Sum_probs=50.6

Q ss_pred             ceeeecCCCcEEEEEEeeecc-cceeEEeeccce-----eEe-------cccceEEEEeccccceEEEEEEEccCCCCCC
Q psy4613           9 QLVGAPIDTDVTLECYVEAYP-KSINYWVRDQGD-----MVI-------SSERYEVESISRSIFDFKMRLTIKKITKYDL   75 (96)
Q Consensus         9 ~~~~~~~g~~~~l~c~~~~~~-~~~~~w~~~~~~-----~~~-------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~   75 (96)
                      ..+.+..|++++|.|.+.... ...+.|++....     +..       ...++.+.....   .....|.|.+++..|+
T Consensus         4 ~~v~~~~G~~v~L~C~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~R~~~~~~~~---~~~~~L~I~~~~~~Ds   80 (110)
T 2q87_A            4 RTVAGPVGGSLSVQCPYEKEHRTLNKYWCRPPQIFLCDKIVETKGSAGKRNGRVSIRDSPA---NLSFTVTLENLTEEDA   80 (110)
T ss_dssp             EEEEECTTSCEEEEEECCGGGTTSEEEEESCCSSSSCCCSEESSSTTCSEETTEEEEEEGG---GTEEEEEESSCCGGGC
T ss_pred             cEEEEeCCCcEEEEeEecCCcCCceEEEEecCCCCCCeEEEEeCCccccccCCEEEEEcCc---CCEEEEEEccCCHHHC
Confidence            456788999999999987644 358999986321     111       112333321110   1246799999999999


Q ss_pred             eeEEEEEecCC
Q psy4613          76 GSYKCIAKNSL   86 (96)
Q Consensus        76 g~y~c~~~~~~   86 (96)
                      |.|.|.+.+..
T Consensus        81 G~Y~C~~~~~~   91 (110)
T 2q87_A           81 GTYWCGVDTPW   91 (110)
T ss_dssp             EEEEEEEECTT
T ss_pred             EEEEEEEecCc
Confidence            99999999875

>2oyp_A Hepatitis A virus cellular receptor 2; TIM-3, T-cell immunoglobulin mucin, signaling protein; 1.95A {Mus musculus} PDB: 3kaa_A*

Probab=99.13  E-value=6.3e-10  Score=51.33  Aligned_cols=81  Identities=17%  Similarity=0.198  Sum_probs=50.9

Q ss_pred             eeeecCCCcEEEEEEeeecccc---eeEEeeccce-------eEec---------ccceEEEEeccccceEEEEEEEccC
Q psy4613          10 LVGAPIDTDVTLECYVEAYPKS---INYWVRDQGD-------MVIS---------SERYEVESISRSIFDFKMRLTIKKI   70 (96)
Q Consensus        10 ~~~~~~g~~~~l~c~~~~~~~~---~~~w~~~~~~-------~~~~---------~~~~~~~~~~~~~~~~~~~l~i~~~   70 (96)
                      .+.+..|+++.|.|.+.+.+.+   .+.|++....       +...         ..++.+....   ......|.|.++
T Consensus         3 ~v~~~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~g~~~~~~~~~r~~~~~~~---~~~~~sL~I~~v   79 (109)
T 2oyp_A            3 GYKVEVGKNAYLPCSYTLPTSGTLVPMCWGKGFCPWSQCTNELLRTDERNVTYQKSSRYQLKGDL---NKGDVSLIIKNV   79 (109)
T ss_dssp             EEEECTTSCEEECCBCCCCTTCCCCCEEEESSSCCSSSCSSEEEEECSSSEEEESCTTEEECSCG---GGTBCCEEECSC
T ss_pred             CEEEEcCCCEEEEEEeECCCCCCeEEEEEEecCCCCCCceeEEEEcCCcCccccccceEEEccCc---cCCcEeEEEccC
Confidence            4567899999999998765432   4899986421       1111         1122111100   001257999999


Q ss_pred             CCCCCeeEEEEEecCCCceEEEE
Q psy4613          71 TKYDLGSYKCIAKNSLGEVESSI   93 (96)
Q Consensus        71 ~~~d~g~y~c~~~~~~g~~~~~~   93 (96)
                      +..|+|.|.|.+.+..+.....+
T Consensus        80 ~~~D~G~Y~C~v~~~~~~~~~~~  102 (109)
T 2oyp_A           80 TLDDHGTYCCRIQFPGLMNDKKL  102 (109)
T ss_dssp             CGGGCEEEEEEECCSSTTCCEEE
T ss_pred             CChhCeEEEEEEEcCCcccceEE
Confidence            99999999999998765443333

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G

Probab=99.13  E-value=1.1e-11  Score=62.94  Aligned_cols=73  Identities=25%  Similarity=0.405  Sum_probs=54.1

Q ss_pred             eeecCCCcEEEEEEe-eecccceeEEeeccceeEeccc--------ceEEEEeccccceEEEEEEEccCCCCCCeeEEEE
Q psy4613          11 VGAPIDTDVTLECYV-EAYPKSINYWVRDQGDMVISSE--------RYEVESISRSIFDFKMRLTIKKITKYDLGSYKCI   81 (96)
Q Consensus        11 ~~~~~g~~~~l~c~~-~~~~~~~~~w~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~   81 (96)
                      ..+..|..+.|.|.+ .+.|.+.+.|++++..+.....        ++...       .....|.|.++...|.|.|.|.
T Consensus       117 ~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~L~i~~~~~~d~G~Y~C~  189 (209)
T 1nbq_A          117 SSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLN-------PTTGELVFDPLSASDTGEYSCE  189 (209)
T ss_dssp             SEEETTSCEEECCCCCSCBSCCEEEEEETTCCCCSCSSSSSSCTTCCCCCC-------TTTCCEEESSCCGGGCCCEEEE
T ss_pred             cceecCCEEEEEEeCCCCCCCceeEEEECCeeCCCccccceeeeccceEEc-------CCcceEEEEeccccCCeEEEEE
Confidence            346789999999996 8889999999998765432111        11000       0125789999999999999999


Q ss_pred             EecCCCceE
Q psy4613          82 AKNSLGEVE   90 (96)
Q Consensus        82 ~~~~~g~~~   90 (96)
                      +.|..|...
T Consensus       190 a~n~~g~~~  198 (209)
T 1nbq_A          190 ARNGYGTPM  198 (209)
T ss_dssp             EECSSSCCE
T ss_pred             EeCCcCccc
Confidence            999988763

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*

Probab=99.13  E-value=9.4e-11  Score=64.48  Aligned_cols=80  Identities=21%  Similarity=0.334  Sum_probs=56.8

Q ss_pred             CCeEEecC-ceeeecCCCcEEEEEEeeecccceeEEee-ccceeEecccceEEEEeccccceEEEEEEEccCCCCC----
Q psy4613           1 HPVIHVPN-QLVGAPIDTDVTLECYVEAYPKSINYWVR-DQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYD----   74 (96)
Q Consensus         1 ~p~~~~~~-~~~~~~~g~~~~l~c~~~~~~~~~~~w~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d----   74 (96)
                      +|.+...+ ..+.+..|..+.|.|.+.+.|.+.+.|++ ++..+. .........       ....|.|.+++..|    
T Consensus         3 ~P~f~~~p~~~~~~~~G~~v~l~C~~~g~p~p~v~W~k~~g~~~~-~~~~~~~~~-------~~~~L~i~~~~~~d~~~~   74 (388)
T 2v5m_A            3 GPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVG-DVPGLRQIS-------SDGKLVFPPFRAEDYRQE   74 (388)
T ss_dssp             EEEEEECCCSEEEEETTTCEEEECEEEEESCCEEEEEETTSCBCC-CBTTTBEEC-------STTEEEECCCCGGGCCHH
T ss_pred             CCchhhCCCceEEEEcCccEEEEEECCCCCCCEEEEEcCCCCccc-cCCCceEEc-------CCceEEecccChhhcccc
Confidence            35565544 44667889999999999999999999999 443332 222211111       12468899999887    


Q ss_pred             --CeeEEEEEecCCCc
Q psy4613          75 --LGSYKCIAKNSLGE   88 (96)
Q Consensus        75 --~g~y~c~~~~~~g~   88 (96)
                        .|.|.|.+.|..|.
T Consensus        75 ~d~G~Y~C~a~n~~g~   90 (388)
T 2v5m_A           75 VHAQVYACLARNQFGS   90 (388)
T ss_dssp             HHEEEEEEEEEETTEE
T ss_pred             ccCceEEEEEEccCCe
Confidence              99999999998775

>2d9c_A Signal-regulatory protein beta-1; beta-sandwich, SIRP-beta-1, CD172B antigen, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.13  E-value=2.1e-10  Score=55.20  Aligned_cols=84  Identities=21%  Similarity=0.386  Sum_probs=54.0

Q ss_pred             eEEecCceeeecCCCcEEEEEEeeec-ccceeEEeeccce---eEecc-----cceEEEEeccccceEEEEEEEccCCCC
Q psy4613           3 VIHVPNQLVGAPIDTDVTLECYVEAY-PKSINYWVRDQGD---MVISS-----ERYEVESISRSIFDFKMRLTIKKITKY   73 (96)
Q Consensus         3 ~~~~~~~~~~~~~g~~~~l~c~~~~~-~~~~~~w~~~~~~---~~~~~-----~~~~~~~~~~~~~~~~~~l~i~~~~~~   73 (96)
                      .+..++..+.+..|++++|.|.+.+. +.+.+.|++....   ++...     .++...............|.|.+++..
T Consensus        10 ~v~q~p~~~~v~~G~~v~L~C~~~~~~~~~~v~W~r~~~~~~~~i~~~~~~~~~r~~~~~~~~~~~~~~~~L~I~~v~~~   89 (136)
T 2d9c_A           10 QVIQPEKSVSVAAGESATLRCAMTSLIPVGPIMWFRGAGAGRELIYNQKEGHFPRVTTVSELTKRNNLDFSISISNITPA   89 (136)
T ss_dssp             CEECCCSEEEEETTSCEEECCEESCCCSCCCCEEEETTTSSCEEEEESSSCCCSSBCCSSCSSSSSCCBCCEEESSCCTT
T ss_pred             EEEecCcEEEEcCCCCEEEEEEEcCCCCCceEEEEeecCCCeEEEEEcCCCcccceeeeeeeccCCCCEEEEEECCCCHH
Confidence            34556677889999999999998765 4568999987521   11111     011100000000011457999999999


Q ss_pred             CCeeEEEEEecCC
Q psy4613          74 DLGSYKCIAKNSL   86 (96)
Q Consensus        74 d~g~y~c~~~~~~   86 (96)
                      |+|.|.|.+.+..
T Consensus        90 DsG~Y~C~~~~~~  102 (136)
T 2d9c_A           90 DAGTYYCVKFRKG  102 (136)
T ss_dssp             TCEEEEEEEEECC
T ss_pred             HCEEEEEEEEeCC
Confidence            9999999988643

>1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.13  E-value=2.4e-09  Score=55.90  Aligned_cols=82  Identities=23%  Similarity=0.449  Sum_probs=56.7

Q ss_pred             CCeEEecCceeeecCCCcEEEEEEeeec--ccceeEEeecc--ce--eEe--------------cccceEEEEeccccce
Q psy4613           1 HPVIHVPNQLVGAPIDTDVTLECYVEAY--PKSINYWVRDQ--GD--MVI--------------SSERYEVESISRSIFD   60 (96)
Q Consensus         1 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~--~~~~~~w~~~~--~~--~~~--------------~~~~~~~~~~~~~~~~   60 (96)
                      ++.+...+..+.+..|+.+.|.|.+.+.  +.+.+.|++..  ..  ...              ...++.+....  . .
T Consensus         1 ~~~v~q~p~~v~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~--~-~   77 (242)
T 1hxm_B            1 AGHLEQPQISSTKTLSKTARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIP--E-T   77 (242)
T ss_dssp             CCEEECCCSEEEEETTCCEEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEET--T-T
T ss_pred             CCccCcCCceEEecCCCcEEEEEEeCCccccCceEEEEEeCCCCCcEEEEEEecCCceecCCcccCCeEEEEecC--C-C
Confidence            4566777788889999999999999875  56789999853  11  111              11233322110  0 0


Q ss_pred             EEEEEEEccCCCCCCeeEEEEEecC
Q psy4613          61 FKMRLTIKKITKYDLGSYKCIAKNS   85 (96)
Q Consensus        61 ~~~~l~i~~~~~~d~g~y~c~~~~~   85 (96)
                      ....|.|.+++..|.|.|.|.+.+.
T Consensus        78 ~~~~L~I~~v~~~D~G~Y~C~~~~~  102 (242)
T 1hxm_B           78 STSTLTIHNVEKQDIATYYCALWEA  102 (242)
T ss_dssp             TEEEEEECSCCGGGCEEEEEEEEEE
T ss_pred             cEEEEEECCCCcccCEEEEEeeecC
Confidence            2467999999999999999999875

>2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system; 2.88A {Mus musculus}

Probab=99.13  E-value=9.9e-10  Score=58.82  Aligned_cols=76  Identities=17%  Similarity=0.287  Sum_probs=52.4

Q ss_pred             EecCceeeecCCCcEEEEEEeeecccc------eeEEeecc--c--eeEec---------ccceEEEEeccccceEEEEE
Q psy4613           5 HVPNQLVGAPIDTDVTLECYVEAYPKS------INYWVRDQ--G--DMVIS---------SERYEVESISRSIFDFKMRL   65 (96)
Q Consensus         5 ~~~~~~~~~~~g~~~~l~c~~~~~~~~------~~~w~~~~--~--~~~~~---------~~~~~~~~~~~~~~~~~~~l   65 (96)
                      ...+..+.+..|+.+.|.|.+.+.+.+      .+.|+++.  .  ..+..         ..++.....     .....|
T Consensus       163 ~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~-----~~~~~L  237 (291)
T 2gki_A          163 SQSPSSLAVSAGEKVTMSCKSSQSLFNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGS-----GTDFTL  237 (291)
T ss_dssp             ECSCSEEEEETTSCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEE-----TTEEEE
T ss_pred             EcCCCEEEEcCCCcEEEEEEcCCccccccccceeEEEEEECCCCCcEEEEEEcccCCCCcCCCEEEEec-----CCEEEE
Confidence            334455678899999999999887765      89999863  1  11111         123332210     023579


Q ss_pred             EEccCCCCCCeeEEEEEecC
Q psy4613          66 TIKKITKYDLGSYKCIAKNS   85 (96)
Q Consensus        66 ~i~~~~~~d~g~y~c~~~~~   85 (96)
                      .|.+++..|+|.|.|.+.+.
T Consensus       238 ~I~~v~~~DsG~Y~C~a~~~  257 (291)
T 2gki_A          238 TISSVQAEDLAVYYCKQSYY  257 (291)
T ss_dssp             EESSCCGGGCEEEEEEEEET
T ss_pred             EECCCCHHHCEEEEEEEccC
Confidence            99999999999999999884

>2yz1_A Tyrosine-protein phosphatase non-receptor type substrate 1; beta-sandwich, structural genomics, NPPSFA; 1.40A {Mus musculus}

Probab=99.12  E-value=3.4e-10  Score=53.32  Aligned_cols=84  Identities=20%  Similarity=0.372  Sum_probs=53.4

Q ss_pred             eEEecCceeeecCCCcEEEEEEeeec-ccceeEEeeccce---eEec-c----cceEEEEeccccceEEEEEEEccCCCC
Q psy4613           3 VIHVPNQLVGAPIDTDVTLECYVEAY-PKSINYWVRDQGD---MVIS-S----ERYEVESISRSIFDFKMRLTIKKITKY   73 (96)
Q Consensus         3 ~~~~~~~~~~~~~g~~~~l~c~~~~~-~~~~~~w~~~~~~---~~~~-~----~~~~~~~~~~~~~~~~~~l~i~~~~~~   73 (96)
                      .+..++..+.+..|++++|.|.+.+. +.+.+.|++....   ++.. .    .++...............|.|.+++..
T Consensus         9 ~v~q~p~~~~~~~G~~v~L~C~~~~~~~~~~v~W~r~~~~~~~~i~~~~~~~~~r~~~~~~~~~~~~~~~~L~I~~v~~~   88 (120)
T 2yz1_A            9 KVTQPEKSVSVAAGDSTVLNCTLTSLLPVGPIKWYRGVGQSRLLIYSFTGEHFPRVTNVSDATKRNNMDFSIRISNVTPE   88 (120)
T ss_dssp             CEECCSSEEEECTTCCEEECCEESCCCSCCCEEEEESSSTTCEEEEEECEECTTTCCSEEECCBSSTTBCCEEECSCCGG
T ss_pred             EEECCCceEEEeCCCCEEEEeEECCCCCCcEEEEEcCCCCCcEEEEEcCCcccCcccceeeccccCCCeEEEEECCCCHH
Confidence            34556677889999999999998764 4568999987421   1111 0    011100000000011246999999999


Q ss_pred             CCeeEEEEEecCC
Q psy4613          74 DLGSYKCIAKNSL   86 (96)
Q Consensus        74 d~g~y~c~~~~~~   86 (96)
                      |+|.|.|.+.+..
T Consensus        89 DsG~Y~C~~~~~~  101 (120)
T 2yz1_A           89 DAGTYYCVKFQKG  101 (120)
T ss_dssp             GCEEEEEEEEECC
T ss_pred             HCEEEEEEEEcCC
Confidence            9999999988753

>1xt5_A Variable region-containing chitin-binding protein 3; innate immunity, VCBP, primordial antigen receptor, florida lancelet, amphioxus; 1.15A {Branchiostoma floridae}

Probab=99.12  E-value=7.9e-10  Score=52.91  Aligned_cols=83  Identities=16%  Similarity=0.197  Sum_probs=52.1

Q ss_pred             EEecCceeeecCCCcEEEEEEeee---cccceeEEeecccee----Eec-------------ccceEEEEecc--ccce-
Q psy4613           4 IHVPNQLVGAPIDTDVTLECYVEA---YPKSINYWVRDQGDM----VIS-------------SERYEVESISR--SIFD-   60 (96)
Q Consensus         4 ~~~~~~~~~~~~g~~~~l~c~~~~---~~~~~~~w~~~~~~~----~~~-------------~~~~~~~~~~~--~~~~-   60 (96)
                      +..++..+.+..|+++.|.|.+..   .+.+.+.|++.....    +..             ...........  .... 
T Consensus         7 v~~~~~~v~v~~G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~   86 (135)
T 1xt5_A            7 VRTTHTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLGRASV   86 (135)
T ss_dssp             EECSCSEEEEETTSCEEECCEEEEETCCSCCEEEEEEESSSSSEEEEEEEEECCCCTTCCCCTTSEEEEECGGGTTTEEE
T ss_pred             EeCCCceEEEeCCCCEEEeeEeecCCCCCccEEEEEeeCCCCCceEEEEeccccccccccccccccccccChhhcCcEEE
Confidence            445667788999999999999764   466789999864321    110             00000000000  0000 


Q ss_pred             ---EEEEEEEccCCCCCCeeEEEEEecCC
Q psy4613          61 ---FKMRLTIKKITKYDLGSYKCIAKNSL   86 (96)
Q Consensus        61 ---~~~~l~i~~~~~~d~g~y~c~~~~~~   86 (96)
                         ....|.|.+++..|+|.|.|.+.+..
T Consensus        87 ~~~~~~sL~I~~v~~~D~G~Y~C~v~~~~  115 (135)
T 1xt5_A           87 ANLAAPTLRLTHVHPQDGGRYWCQVAQWS  115 (135)
T ss_dssp             SCTTSCCEEECSCCGGGCEEEEEEEECSS
T ss_pred             ecCCCCeEEECCCChhhCcEEEEEEEcCC
Confidence               12469999999999999999999853

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A

Probab=99.12  E-value=1.4e-09  Score=56.02  Aligned_cols=82  Identities=13%  Similarity=0.207  Sum_probs=52.6

Q ss_pred             EEecCceeeecCCCcE-EEEEEe-eecccceeEEeeccceeEecc---cceEEEEe----ccccceEEEEEEEccCCCCC
Q psy4613           4 IHVPNQLVGAPIDTDV-TLECYV-EAYPKSINYWVRDQGDMVISS---ERYEVESI----SRSIFDFKMRLTIKKITKYD   74 (96)
Q Consensus         4 ~~~~~~~~~~~~g~~~-~l~c~~-~~~~~~~~~w~~~~~~~~~~~---~~~~~~~~----~~~~~~~~~~l~i~~~~~~d   74 (96)
                      +...+....+..|..+ .|.|.+ .+.|.+.+.|++++..+....   .+..+...    ....+...+.|.+......|
T Consensus       121 ~~~~~~~~~~~~g~~~~~l~C~~~~~~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~dd  200 (231)
T 2pet_A          121 VSPNKGTLSVMEDSAQEIATCNSRNGNPAPKITWYRNGQRLEVPVEMNPEGYMTSRTVREASGLLSLTSTLYLRLRKDDR  200 (231)
T ss_dssp             EEECCSSCCTTCCSEEEEEEEEEEEEBSCCEEEEEETTEECCCCSSCCSSEEEEEEEEECTTSCEEEEEEEEEECCGGGG
T ss_pred             EecCCcceeecCCCceEEEEEEeECcccCCEEEEEECCccCccccccccceeecceeEecCCCeEEEEEEEEEecchhhC
Confidence            3333444445678877 999999 888999999999876554222   23332221    11122223667777556666


Q ss_pred             CeeEEEEEecC
Q psy4613          75 LGSYKCIAKNS   85 (96)
Q Consensus        75 ~g~y~c~~~~~   85 (96)
                      .|.|.|.+.|.
T Consensus       201 ~g~Y~C~a~n~  211 (231)
T 2pet_A          201 DASFHCAAHYS  211 (231)
T ss_dssp             GCEEEEEEEEE
T ss_pred             CceEEEEEEcC
Confidence            99999999984

>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.12  E-value=4.6e-10  Score=57.27  Aligned_cols=75  Identities=20%  Similarity=0.436  Sum_probs=53.1

Q ss_pred             EEecCceeeecCCCcEEEEEEeeecccceeEEeecc--ceeE--e---------cccceEEEEeccccceEEEEEEEccC
Q psy4613           4 IHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQ--GDMV--I---------SSERYEVESISRSIFDFKMRLTIKKI   70 (96)
Q Consensus         4 ~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~--~~~~--~---------~~~~~~~~~~~~~~~~~~~~l~i~~~   70 (96)
                      +.. +..+.+..|+.+.|.|.+.+.+.+.+.|++..  ..+.  .         ...++......     ....|.|.++
T Consensus         3 v~q-p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~-----~~~~L~I~~v   76 (212)
T 1nfd_E            3 LIQ-PSSASVTVGETVKITCSGDQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSG-----TTATLTISGA   76 (212)
T ss_dssp             EEC-CSEEEEETTSCCCEEEEETTGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEET-----TEEEEEETTC
T ss_pred             eEC-CCeEEEeCCCcEEEEEecCCCCCCeEEEEEECCCCCcEEEEEeccccCCCccccEEEEeeC-----CEEEEEECcC
Confidence            344 56778899999999999888777889998753  2111  0         02333332210     2357999999


Q ss_pred             CCCCCeeEEEEEec
Q psy4613          71 TKYDLGSYKCIAKN   84 (96)
Q Consensus        71 ~~~d~g~y~c~~~~   84 (96)
                      +..|.|.|.|.+.+
T Consensus        77 ~~~D~G~Y~C~~~n   90 (212)
T 1nfd_E           77 QPEDEAAYYCLSSY   90 (212)
T ss_dssp             CGGGCSEEEEEEEE
T ss_pred             CcccCEEEEEEEEc
Confidence            99999999999986

>2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ...

Probab=99.12  E-value=1.7e-10  Score=59.10  Aligned_cols=73  Identities=16%  Similarity=0.275  Sum_probs=48.1

Q ss_pred             CCCcEEEEEEeee-cccc-eeEEeeccceeEecccceEE--EEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCc
Q psy4613          15 IDTDVTLECYVEA-YPKS-INYWVRDQGDMVISSERYEV--ESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGE   88 (96)
Q Consensus        15 ~g~~~~l~c~~~~-~~~~-~~~w~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~   88 (96)
                      .|..+.|.|.+.+ .|.+ .+.|++++..+. .......  .......+...+.|.|......|.|.|.|.+.|....
T Consensus       128 ~g~~v~L~C~~~g~~P~~~~v~W~k~g~~~~-~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~  204 (216)
T 2xzc_L          128 KSGTASVVCLLNNFYPREAKVQWKVDNALQS-GNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLS  204 (216)
T ss_dssp             HTTEEEEEEEEEEEBSSCCEEEEEETTEECC-SSEEEEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCS
T ss_pred             cCCcEEEEEEEEeEcCCceEEEEEECCeecC-CCeeEecCcccCCCCCEEEEEEEEECHHHhCCCCcEEEEEEcCCCC
Confidence            4889999999988 4454 899999865542 1100000  0011112224567889998899999999999997643

>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.12  E-value=4.9e-12  Score=64.62  Aligned_cols=75  Identities=12%  Similarity=0.141  Sum_probs=49.8

Q ss_pred             cCCCcEEEEEEeeec-cc-ceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCce
Q psy4613          14 PIDTDVTLECYVEAY-PK-SINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEV   89 (96)
Q Consensus        14 ~~g~~~~l~c~~~~~-~~-~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~   89 (96)
                      ..|..+.|.|.+.+. |. +.+.|++++..+............. +.+...+.|.|..+...|.|.|.|.+.|..+..
T Consensus       126 ~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~-~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~  202 (212)
T 1nfd_E          126 LRTNKATLVCLVNDFYPGSATVTWKANGATINDGVKTTKPSKQG-QNYMTSSYLSLTADQWKSHNRVSCQVTHEGETV  202 (212)
T ss_dssp             HHTTEECCCEEEEEEBSSCCEEEEEETTEEECSSCBCCCCBCSS-SCEEEEEBCCEEHHHHHTCSCEEEEEECTTTTC
T ss_pred             ccCCceEEEEEEEeeECCccEEEEEECCeEcCCCeecCCceecC-CCceEEEEEEEchhhcCCCCeEEEEEEeCCceE
Confidence            458899999999886 44 6899999875543111100000000 112234668899999999999999999987653

>1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY high affinity, antibody binding, electrostatics, directed evolution; HET: FLU; 1.50A {Homo sapiens}

Probab=99.12  E-value=1.3e-09  Score=57.62  Aligned_cols=80  Identities=15%  Similarity=0.323  Sum_probs=55.3

Q ss_pred             eEEecCceeeecCCCcEEEEEEeeecc-----cceeEEeecc--c--eeEec---------ccceEEEEeccccceEEEE
Q psy4613           3 VIHVPNQLVGAPIDTDVTLECYVEAYP-----KSINYWVRDQ--G--DMVIS---------SERYEVESISRSIFDFKMR   64 (96)
Q Consensus         3 ~~~~~~~~~~~~~g~~~~l~c~~~~~~-----~~~~~w~~~~--~--~~~~~---------~~~~~~~~~~~~~~~~~~~   64 (96)
                      .+...+..+.+..|+.+.|.|.+.+.+     .+.+.|++..  .  ..+..         ..++.....     .....
T Consensus        17 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~-----~~~~~   91 (268)
T 1x9q_A           17 VMTQTPLSLPVSLGDQASISCRSSQSLVHSNGNTYLRWYLQKPGQSPKVLIYKVSNRVSGVPDRFSGSGS-----GTDFT   91 (268)
T ss_dssp             CEEEECSEECCCTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEE-----TTEEE
T ss_pred             eEEeeCCeEEecCCCCEEEEeEecCCcccccCCceEEEEEECCCCCCEEEEEecCCCCCCCcccEEEEcC-----CCEEE
Confidence            345556677789999999999988766     4789999753  1  11110         123333210     02357


Q ss_pred             EEEccCCCCCCeeEEEEEecCCC
Q psy4613          65 LTIKKITKYDLGSYKCIAKNSLG   87 (96)
Q Consensus        65 l~i~~~~~~d~g~y~c~~~~~~g   87 (96)
                      |.|.+++..|.|.|.|.+.+..+
T Consensus        92 L~I~~v~~~DsG~Y~C~~~~~~~  114 (268)
T 1x9q_A           92 LKINRVEAEDLGVYFCSQSTHVP  114 (268)
T ss_dssp             EEESSCCGGGCEEEEEEECSSSS
T ss_pred             EEECCCChhHCEEEEEEEecCCC
Confidence            99999999999999999988643

>4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B 4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B 3qjh_B 3qiw_D* 3qiu_D

Probab=99.12  E-value=2.6e-09  Score=55.64  Aligned_cols=78  Identities=19%  Similarity=0.258  Sum_probs=53.0

Q ss_pred             CeEEecCceeeecCCCcEEEEEEeeecccceeEEeecc--ce--eE----------ecc---cceEEEEeccccceEEEE
Q psy4613           2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQ--GD--MV----------ISS---ERYEVESISRSIFDFKMR   64 (96)
Q Consensus         2 p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~--~~--~~----------~~~---~~~~~~~~~~~~~~~~~~   64 (96)
                      +.+..++..+.+..|+.+.|.| ..+.+.+.+.|++..  ..  ..          ...   .++.+....    .....
T Consensus         3 ~~v~~~p~~v~v~~G~~v~L~C-~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~----~~~~s   77 (245)
T 4ei6_B            3 PKVLQIPSHQIIDMGQMVTLNC-DPVSNHLYFYWYKQILGQQMEFLVNFYNGKVMEKSKLFKDQFSVERPD----GSYFT   77 (245)
T ss_dssp             CCCEEECSEEEEETTCCEEEEE-ECCTTCCEEEEEEEETTTEEEEEEEEETTEEEEECTTCCTTEEEECCT----TSCEE
T ss_pred             cceEeCCceEEecCCCCEEEEE-EcCCCCCEEEEEEECCCCCcEEEEEECCCceeccCCCccCCEEEEecc----CceEE
Confidence            3455667778899999999999 556678899998821  11  00          000   333322210    12357


Q ss_pred             EEEccCCCCCCeeEEEEEec
Q psy4613          65 LTIKKITKYDLGSYKCIAKN   84 (96)
Q Consensus        65 l~i~~~~~~d~g~y~c~~~~   84 (96)
                      |.|.+++..|.|.|.|.+.+
T Consensus        78 L~I~~v~~~D~G~Y~C~~~~   97 (245)
T 4ei6_B           78 LKIQPTALEDSAVYFCASSF   97 (245)
T ss_dssp             EEECSCCGGGCEEEEEEEEC
T ss_pred             EEECCCCHhHCEEEEEEEcc
Confidence            99999999999999999985

>1pz5_B Heavy chain of FAB (SYA/J6); antibody-antigen structure, peptide-carbohydrate mimicry, VA design, immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1m7d_B* 1m71_B* 1m7i_B* 1r24_B 1uz6_F 1uz8_B* 1clz_H*

Probab=99.12  E-value=8.5e-10  Score=56.68  Aligned_cols=78  Identities=17%  Similarity=0.233  Sum_probs=53.0

Q ss_pred             ecCCCcEEEEEEeeec-ccc-eeEEeeccceeE-ecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCce
Q psy4613          13 APIDTDVTLECYVEAY-PKS-INYWVRDQGDMV-ISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEV   89 (96)
Q Consensus        13 ~~~g~~~~l~c~~~~~-~~~-~~~w~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~   89 (96)
                      +..|..+.|.|.+.+. |.| .+.|++++.... .......  . . ..+...+.|.|......| |.|.|.+.|..|..
T Consensus       137 ~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~~~~~~~~~~~~--~-~-~~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~  211 (220)
T 1pz5_B          137 DTSGSSVTLGCLVKGYFPEPVTVKWNYGALSSGVRTVSSVL--Q-S-GFYSLSSLVTVPSSTWPS-QTVICNVAHPASKV  211 (220)
T ss_dssp             CSCSSSEEEEEEEEEEBSSCCEEEEGGGTCCTTEEECCCEE--E-T-TEEEEEEEEEECGGGTTT-SCCEEEEEEGGGTE
T ss_pred             cCCCCcEEEEEEEEEEeCCCeEEEEecCCcccceEEcCCcc--c-C-CeEEEEEEEEEcchhcCC-ceEEEEEEECCccE
Confidence            4578999999999987 888 999998764310 0001000  0 0 112234678888887766 99999999999887


Q ss_pred             EEEEEe
Q psy4613          90 ESSIRL   95 (96)
Q Consensus        90 ~~~~~l   95 (96)
                      ...+.+
T Consensus       212 ~~~~~~  217 (220)
T 1pz5_B          212 DLIKEI  217 (220)
T ss_dssp             EEEEEC
T ss_pred             eeeecC
Confidence            776654

>1ncn_A T lymphocyte activation antigen CD86; IG V, beta strands, immune system; 2.70A {Homo sapiens} SCOP: b.1.1.1 PDB: 1i85_A

Probab=99.11  E-value=4.2e-10  Score=52.18  Aligned_cols=75  Identities=16%  Similarity=0.289  Sum_probs=49.7

Q ss_pred             eeeecCCCcEEEEEEeeecccc-----eeEEeeccceeE--ecc-------------cceEEEEeccccceEEEEEEEcc
Q psy4613          10 LVGAPIDTDVTLECYVEAYPKS-----INYWVRDQGDMV--ISS-------------ERYEVESISRSIFDFKMRLTIKK   69 (96)
Q Consensus        10 ~~~~~~g~~~~l~c~~~~~~~~-----~~~w~~~~~~~~--~~~-------------~~~~~~~~~~~~~~~~~~l~i~~   69 (96)
                      .+.+..|+++.|.|.+.+.+.+     .+.|++.+....  ...             .+..+..       ....|.|.+
T Consensus         3 ~v~~~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-------~~~sL~I~~   75 (110)
T 1ncn_A            3 KIQAYFNETADLPCQFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTSFDS-------DSWTLRLHN   75 (110)
T ss_dssp             EEEEETTSCEEEECCCCCTTCCCGGGEEEEEEETTCCEEEEEETTEECCSSBCTTTTTSEEEET-------TTTEEEECS
T ss_pred             EEEEEeCCCEEEEeEeCCCCcCCCccEEEEEEeCCCccEEEEECCcccccccCcccCCcEEEEC-------CCEEEEEcC
Confidence            3567899999999998754432     489998753211  100             1111110       125799999


Q ss_pred             CCCCCCeeEEEEEecCCCceEE
Q psy4613          70 ITKYDLGSYKCIAKNSLGEVES   91 (96)
Q Consensus        70 ~~~~d~g~y~c~~~~~~g~~~~   91 (96)
                      ++..|+|.|.|.+.+..+....
T Consensus        76 v~~~D~G~Y~C~v~~~~~~~~~   97 (110)
T 1ncn_A           76 LQIKDKGLYQCIIHHKKPTGMI   97 (110)
T ss_dssp             CCGGGCEEEEEEEEEECSSSEE
T ss_pred             CChHHCEEEEEEEEcCCCCceE
Confidence            9999999999999987665443

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.11  E-value=5.7e-10  Score=56.19  Aligned_cols=64  Identities=13%  Similarity=0.282  Sum_probs=47.1

Q ss_pred             eeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecC
Q psy4613          11 VGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNS   85 (96)
Q Consensus        11 ~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~   85 (96)
                      ..+..|+.+.|.|.+.+ +.+.+.|++++..+...   ....       .....|.|.+++..|.|.|.|.+.+.
T Consensus       108 ~~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~---~~~~-------~~~~~L~I~~v~~~d~G~Y~C~a~n~  171 (188)
T 1oll_A          108 PEVISGEKVTFYCRLDT-ATSMFLLLKEGRSSHVQ---RGYG-------KVQAEFPLGPVTTAHRGTYRCFGSYN  171 (188)
T ss_dssp             SEEETTCEEEEEEECSS-SCSEEEEEEESSSCEEE---EEEC-------SSEEEEEEEECCGGGCEEEEEECEEE
T ss_pred             CccccCCEEEEEEEcCC-CCCEEEEEECCcccccc---ccCC-------CceeEEEECCCCcCCCcEEEEEEEcC
Confidence            34678999999999766 45688999986554321   1100       13477999999999999999998764

>2fbj_H IGA-kappa J539 FAB (heavy chain); immunoglobulin; HET: NAG FUC; 1.95A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mcp_H 2mcp_H*

Probab=99.11  E-value=3.2e-09  Score=54.70  Aligned_cols=77  Identities=18%  Similarity=0.266  Sum_probs=52.0

Q ss_pred             ecCCCcEEEEEEeeec-cc--ceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCce
Q psy4613          13 APIDTDVTLECYVEAY-PK--SINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEV   89 (96)
Q Consensus        13 ~~~g~~~~l~c~~~~~-~~--~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~   89 (96)
                      +..|..+.|.|.+.+. |.  +.+.|++++..+........  ......+...+.|.|......|.|.|.|.+.+..+..
T Consensus       134 ~~~g~~v~L~C~~~g~~P~~~~~v~W~~~~~~~~~~~~~~~--~~~~g~~~~~s~L~i~~~~~~d~g~ytC~v~n~~~~~  211 (220)
T 2fbj_H          134 ALSSDPVIIGCLIHDYFPSGTMNVTWGKSGKDITTVNFPPA--LASGGRYTMSNQLTLPAVECPEGESVKCSVQHDSNPV  211 (220)
T ss_dssp             SSCCSSEEEEEEEEEEBSCCCEEEEESCCCSSCEEEECCCE--ECSSSCEEEEEEEEECGGGSCTTCEEEEEEEETTSCC
T ss_pred             ccCCCcEEEEEEEEeEECCCcEEEEEecCCEecceEecCce--ECCCCCEEEEEEEEECHHHcCCCCeEEEEEEcCCCce
Confidence            4578999999999886 65  68999988654321101100  0111223244578888888889999999999998876


Q ss_pred             EE
Q psy4613          90 ES   91 (96)
Q Consensus        90 ~~   91 (96)
                      ..
T Consensus       212 ~~  213 (220)
T 2fbj_H          212 QE  213 (220)
T ss_dssp             EE
T ss_pred             Ec
Confidence            53

>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus}

Probab=99.11  E-value=1.2e-10  Score=61.01  Aligned_cols=74  Identities=15%  Similarity=0.246  Sum_probs=48.1

Q ss_pred             CCCcEEEEEEeeeccc--ceeEEeeccceeEec-ccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCc
Q psy4613          15 IDTDVTLECYVEAYPK--SINYWVRDQGDMVIS-SERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGE   88 (96)
Q Consensus        15 ~g~~~~l~c~~~~~~~--~~~~w~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~   88 (96)
                      .|..+.|.|.+.+.++  +.+.|++++..+... .............+.....|.|..+...|.|.|.|.+.|....
T Consensus       168 ~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~  244 (254)
T 2c1o_A          168 TSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTST  244 (254)
T ss_dssp             HTTEEEEEEEEEEEBSSCCEEEEEESSSEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTCS
T ss_pred             cCCcEEEEEEEecccCCCcEEEEEECCCcccCcceeccccccCCCCcEEEEEEEEeccccccCCCeEEEEEEcCCCC
Confidence            4779999999988443  358999987654311 0000000001112224578999999999999999999997654

>2or8_A Hepatitis A virus cellular receptor 1 homolog; beta barrel, immunoglobulin fold, IGV domain, TIM, immune system; 2.50A {Mus musculus}

Probab=99.11  E-value=1e-09  Score=51.21  Aligned_cols=78  Identities=24%  Similarity=0.300  Sum_probs=50.7

Q ss_pred             cCceeeecCCCcEEEEEEeee-cccceeEEeeccce------eE-ec---------ccceEEEEeccccceEEEEEEEcc
Q psy4613           7 PNQLVGAPIDTDVTLECYVEA-YPKSINYWVRDQGD------MV-IS---------SERYEVESISRSIFDFKMRLTIKK   69 (96)
Q Consensus         7 ~~~~~~~~~g~~~~l~c~~~~-~~~~~~~w~~~~~~------~~-~~---------~~~~~~~~~~~~~~~~~~~l~i~~   69 (96)
                      ++..+.+..|+++.|.|.+.. .....+.|++....      .. ..         ..++.+..   ........|.|.+
T Consensus         3 ~~~~v~~~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~---~~~~~~~sL~I~~   79 (116)
T 2or8_A            3 SYVEVKGVVGHPVTLPCTYSTYRGITTTCWGRGQCPSSACQNTLIWTNGHRVTYQKSSRYNLKG---HISEGDVSLTIEN   79 (116)
T ss_dssp             CCEEEEEETTSCEEECCBCCCTTCCCCEEEEESCCCSSSCTTEEEEECSSSEEEESSTTEECCS---CGGGTBCCEEESS
T ss_pred             CcceEEEEeCCcEEEEEEeeCCCCCcEEEEEEECCCCCCceEEEEEeCCcccCcCCCCeEEEec---CCCCCeEEEEECC
Confidence            445677899999999999865 34557899987411      11 11         11221100   0001235699999


Q ss_pred             CCCCCCeeEEEEEecCCC
Q psy4613          70 ITKYDLGSYKCIAKNSLG   87 (96)
Q Consensus        70 ~~~~d~g~y~c~~~~~~g   87 (96)
                      ++..|+|.|.|.+.+..+
T Consensus        80 v~~~DsG~Y~C~v~~~~~   97 (116)
T 2or8_A           80 SVESDSGLYCCRVEIPGW   97 (116)
T ss_dssp             CCGGGCEEEEEEECCSST
T ss_pred             CCcccCEEEEEEEEcCCc
Confidence            999999999999987643

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}

Probab=99.11  E-value=9e-11  Score=59.21  Aligned_cols=76  Identities=18%  Similarity=0.257  Sum_probs=55.4

Q ss_pred             cCceeeecCCCcEEEEEE-eeeccc-ceeEEeeccceeEec-ccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEe
Q psy4613           7 PNQLVGAPIDTDVTLECY-VEAYPK-SINYWVRDQGDMVIS-SERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAK   83 (96)
Q Consensus         7 ~~~~~~~~~g~~~~l~c~-~~~~~~-~~~~w~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~   83 (96)
                      ++..+.+..|+.+.|.|. +.+.|. +.+.|++++..+... ..+.....       ....|.|.+++..|.|.|.|.+.
T Consensus        14 ~~~~~~v~~G~~v~L~C~~~~~~p~~~~v~W~~~~~~~~~~~~~~~~~~~-------~~~~L~i~~v~~~d~G~Y~C~~~   86 (201)
T 3s97_C           14 ERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQ-------TNGNLYIANVEASDKGNYSCFVS   86 (201)
T ss_dssp             CCCCEEEETTCCEEECCCCCSEESSCCEEEEEESSTTCBCCCSSSEEECT-------TTCCEEESSCCGGGCEEEEEEEE
T ss_pred             CCceEEEECCCCEEEeccccccCCCceEEEEEECCceeeeeeCCCeEEEc-------CCCeEEECcCCcccCeEEEEEEE
Confidence            345677899999999999 888888 899999987655321 11211111       12468999999999999999999


Q ss_pred             cCCCce
Q psy4613          84 NSLGEV   89 (96)
Q Consensus        84 ~~~g~~   89 (96)
                      +..+..
T Consensus        87 ~~~~~~   92 (201)
T 3s97_C           87 SPSITK   92 (201)
T ss_dssp             EGGGTE
T ss_pred             ecCCCc
Confidence            865443

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*

Probab=99.10  E-value=3.8e-10  Score=58.22  Aligned_cols=65  Identities=9%  Similarity=0.127  Sum_probs=48.3

Q ss_pred             eeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecC
Q psy4613          11 VGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNS   85 (96)
Q Consensus        11 ~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~   85 (96)
                      ..+..|+.++|.|...+.+.+.+.|++++..+..   ......       ....|.|.+++..|.|.|.|.+.+.
T Consensus       115 ~~v~~G~~v~L~C~~~~~~~~~~~W~k~g~~~~~---~~~~~~-------~~~~L~I~~v~~~D~G~Y~C~a~n~  179 (218)
T 1uct_A          115 LVLMPGENISLTCSSAHIPFDRFSLAKEGELSLP---QHQSGE-------HPANFSLGPVDLNVSGIYRCYGWYN  179 (218)
T ss_dssp             SEECTTCCCEEEEECSSSCCSEEEEEETTCSSCC---SEEECS-------SSEEEECCSCCGGGCEEEEEEEECT
T ss_pred             CccCCCCCEEEEEeCCCCCCCEEEEEECCCcccc---cccCCC-------ccCEEEEccCCcccCEEEEEEEEcC
Confidence            3568899999999766667788999998754421   111000       2367999999999999999999875

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3

Probab=99.10  E-value=1.8e-10  Score=57.60  Aligned_cols=63  Identities=14%  Similarity=0.071  Sum_probs=47.5

Q ss_pred             CCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCceEEEEEe
Q psy4613          16 DTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL   95 (96)
Q Consensus        16 g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~~~~~~l   95 (96)
                      +..+.|.|.+.+.|.|.+.|++++..+.. ..+                +.+..+...|.|.|.|.+.|..|.......|
T Consensus       110 ~~~v~L~C~~~g~p~p~i~W~~~g~~l~~-~~~----------------~~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l  172 (176)
T 1hng_A          110 CSNATLTCEVLEGTDVELKLYQGKEHLRS-LRQ----------------KTMSYQWTNLRAPFKCKAVNRVSQESEMEVV  172 (176)
T ss_dssp             TTTTEEEEECSSCSSCEEEEEETTEEEEE-ESS----------------SEEEEECSCCSSCEEEEEEETTEEEEEEECC
T ss_pred             CCcEEEEEEecCCCCcEEEEEECCEECCC-CCc----------------EEEEEEEccCCeEEEEEEEecCCCceecccc
Confidence            45689999999999999999998655432 111                2233566899999999999999987766544

>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A

Probab=99.10  E-value=1.5e-09  Score=56.32  Aligned_cols=80  Identities=18%  Similarity=0.260  Sum_probs=53.3

Q ss_pred             eEEecCceeeecCCCcEEEEEEeeecccceeEEeecc--cee--Ee------------cccceEEEEeccccceEEEEEE
Q psy4613           3 VIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQ--GDM--VI------------SSERYEVESISRSIFDFKMRLT   66 (96)
Q Consensus         3 ~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~--~~~--~~------------~~~~~~~~~~~~~~~~~~~~l~   66 (96)
                      .+...+..+.+..|+.+.|.|. .+.+.+.+.|+++.  ...  ..            ...++.+...  .  .....|.
T Consensus         2 ~v~q~p~~~~v~~G~~v~L~C~-~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~--~--~~~~~L~   76 (238)
T 2p1y_A            2 AVTQSPRNKVAVTGGKVTLSCN-QTNNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRP--S--QENFSLI   76 (238)
T ss_dssp             CEEEECSEEEEETTCCEEEEEE-ECSCCSEEEEEEEETTTEEEEEEEESSTTCCEECSSCTTCEEECC--S--SSBCEEE
T ss_pred             cceECccceEEeCCCEEEEEee-cCCCCccEEEEEECCCCCcEEEEEEecCcceeCCCccceEEEEcc--C--CceEEEE
Confidence            3455667788999999999999 77788899999852  111  00            0123322210  0  0134799


Q ss_pred             EccCCCCCCeeEEEEEecCCC
Q psy4613          67 IKKITKYDLGSYKCIAKNSLG   87 (96)
Q Consensus        67 i~~~~~~d~g~y~c~~~~~~g   87 (96)
                      |.+++..|+|.|.|.+.+..|
T Consensus        77 I~~v~~~DsG~Y~C~~~~~~g   97 (238)
T 2p1y_A           77 LELATPSQTSVYFCASGDLGQ   97 (238)
T ss_dssp             ESSCCGGGCEEEEEEEEC---
T ss_pred             EecCCcccCeeEEEEEEeCCC
Confidence            999999999999999998754

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}

Probab=99.10  E-value=7e-10  Score=57.72  Aligned_cols=85  Identities=15%  Similarity=0.171  Sum_probs=55.5

Q ss_pred             EEecCceeeecCCCcEEEEEEeee---cccceeEEeecccee----Eeccc-------------ceEEEEecc-c-cce-
Q psy4613           4 IHVPNQLVGAPIDTDVTLECYVEA---YPKSINYWVRDQGDM----VISSE-------------RYEVESISR-S-IFD-   60 (96)
Q Consensus         4 ~~~~~~~~~~~~g~~~~l~c~~~~---~~~~~~~w~~~~~~~----~~~~~-------------~~~~~~~~~-~-~~~-   60 (96)
                      +..++..+.+..|+.+.|.|.+.+   .+.+.+.|++++...    .....             ......... . ... 
T Consensus         5 v~~~~~~v~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~   84 (250)
T 2fbo_J            5 VRTTHTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLGRASV   84 (250)
T ss_dssp             EECSCSEEEECTTSCEEECCEEEECSCCSCCEEEEEEEEETTEEEEEEEEEECCCBTTBCCCTTSEEEEECGGGTTTEEC
T ss_pred             EEcCCCceEEecCCeEEEEEEeEcCCCCCceEEEEEeCCCCCccEEEEeeccccccccccccccccccccCCCcCceEEe
Confidence            445667788999999999999987   778899999875321    00000             000000000 0 000 


Q ss_pred             ---EEEEEEEccCCCCCCeeEEEEEecCCCc
Q psy4613          61 ---FKMRLTIKKITKYDLGSYKCIAKNSLGE   88 (96)
Q Consensus        61 ---~~~~l~i~~~~~~d~g~y~c~~~~~~g~   88 (96)
                         ....|.|.+++..|.|.|.|.+.+..+.
T Consensus        85 ~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~  115 (250)
T 2fbo_J           85 ANLAAPTLRLTHVHPQDGGRYWCQVAQWSIR  115 (250)
T ss_dssp             SCTTSCCEEECSCCGGGCEEEEEEEECTTCC
T ss_pred             ccCCcceEEEeeCChhhCeEEEEEeccCccC
Confidence               0136999999999999999999987664

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*

Probab=99.10  E-value=5.5e-10  Score=55.60  Aligned_cols=63  Identities=16%  Similarity=0.080  Sum_probs=48.4

Q ss_pred             eeecCCCcEEEEEEee-ecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCC
Q psy4613          11 VGAPIDTDVTLECYVE-AYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLG   87 (96)
Q Consensus        11 ~~~~~g~~~~l~c~~~-~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g   87 (96)
                      ..+..|+.+.|.|.+. +.+.+.+.|++++..+....              ....|.|.++...|.|.|.|.+.|..+
T Consensus        95 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~--------------~~~~L~i~~v~~~d~G~Y~C~a~n~~~  158 (176)
T 1f2q_A           95 EVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWY--------------ENHNISITNATVEDSGTYYCTGKVWQL  158 (176)
T ss_dssp             SEEETTSCEEEEEEEGGGCCEEEEEEEETTEECCSCC--------------CSSEEEESSCCGGGCEEEEEEEEETTE
T ss_pred             ceeeCCCCEEEEEEecCCCCceEEEEEECCEEEeeec--------------CCCeEEECCCCcccCEEEEEEEEeCCc
Confidence            4567899999999984 56667999999865442110              125789999999999999999998644

>3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus}

Probab=99.10  E-value=1.6e-10  Score=59.73  Aligned_cols=79  Identities=18%  Similarity=0.379  Sum_probs=42.5

Q ss_pred             EEecCceeeecCCCcEEEEEEeeecccceeEEeeccc--ee--Eec---------ccceEEEEeccccceEEEEEEEccC
Q psy4613           4 IHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQG--DM--VIS---------SERYEVESISRSIFDFKMRLTIKKI   70 (96)
Q Consensus         4 ~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~--~~--~~~---------~~~~~~~~~~~~~~~~~~~l~i~~~   70 (96)
                      +..++..+.+..|+.+.|.|.+.+.+.+.+.|++...  ..  ...         ..++....     ......|.|.++
T Consensus        26 v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-----~~~~~~L~I~~v  100 (233)
T 3bqu_C           26 VTQSPASLSMSIGEKVTIRCITSTDIDDDMNWYQQKPGEPPRLLISDGNTLRPGVPSRFSSSG-----YGTDFVFTIENM  100 (233)
T ss_dssp             EEEECSBC-------CCEEEEEEEEESSCEEEEEECTTSCCEEEECTTSCBCTTSCTTCCCCE-----EEEEEEEC----
T ss_pred             EEEcCCeEEEecCCCEEEEEecCCcCCCeEEEEEECCCCCcEEEEEcCCccCCCCCccEEeec-----cCCEEEEEECCC
Confidence            4444566678899999999999888778899987531  11  100         11211110     112357999999


Q ss_pred             CCCCCeeEEEEEecCCC
Q psy4613          71 TKYDLGSYKCIAKNSLG   87 (96)
Q Consensus        71 ~~~d~g~y~c~~~~~~g   87 (96)
                      +..|.|.|.|.+.+..+
T Consensus       101 ~~~D~G~Y~C~~~~~~~  117 (233)
T 3bqu_C          101 LSEDVADYYCLQSDNLP  117 (233)
T ss_dssp             -CCCCSEEEEEECSSSS
T ss_pred             CHHHCEEEEEEEecCCc
Confidence            99999999999987654

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A

Probab=99.10  E-value=2.6e-11  Score=61.44  Aligned_cols=77  Identities=17%  Similarity=0.146  Sum_probs=53.8

Q ss_pred             CCeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEE
Q psy4613           1 HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKC   80 (96)
Q Consensus         1 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c   80 (96)
                      +|.+...+. ..+..|+.+.|.|.+.+.+. .+.|++++..+.........       ......|.|.+++..|.|.|.|
T Consensus         5 ~P~i~~~p~-~~v~~G~~v~L~C~~~~~~~-~~~W~k~g~~~~~~~~~~~~-------~~~~~~L~i~~v~~~D~G~Y~C   75 (198)
T 1ugn_A            5 KPTLWAEPG-SVITQGSPVTLRCQGGQETQ-EYRLYREKKTAPWITRIPQE-------LVKKGQFPIPSITWEHTGRYRC   75 (198)
T ss_dssp             CCEEEEESC-SEEETTCCEEEEEECCTTCC-CEEEEESSSCCHHHHTSCHH-------HHTTTEEEESSCCGGGCEEEEE
T ss_pred             CCeEeccCC-CcccCCCcEEEEEEecCCCc-EEEEEECCcccccccccccc-------CCcccEEEECCCCHHHCeEEEE
Confidence            466665555 36889999999999988665 68999986544211000000       0012568999999999999999


Q ss_pred             EEecCC
Q psy4613          81 IAKNSL   86 (96)
Q Consensus        81 ~~~~~~   86 (96)
                      .+.|..
T Consensus        76 ~a~n~~   81 (198)
T 1ugn_A           76 YYGSDT   81 (198)
T ss_dssp             EEEETT
T ss_pred             EEECCC
Confidence            998865

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}

Probab=99.10  E-value=3.6e-10  Score=61.11  Aligned_cols=86  Identities=22%  Similarity=0.368  Sum_probs=58.2

Q ss_pred             eEEecCceeeecCCCcEEEEEEeeec-ccceeEEeecccee---Eec-c----cceEEEEeccccceEEEEEEEccCCCC
Q psy4613           3 VIHVPNQLVGAPIDTDVTLECYVEAY-PKSINYWVRDQGDM---VIS-S----ERYEVESISRSIFDFKMRLTIKKITKY   73 (96)
Q Consensus         3 ~~~~~~~~~~~~~g~~~~l~c~~~~~-~~~~~~w~~~~~~~---~~~-~----~~~~~~~~~~~~~~~~~~l~i~~~~~~   73 (96)
                      .+..++..+.+..|+.+.|.|.+.+. |.+.+.|++++...   ... .    .++...............|.|.+++..
T Consensus         5 ~v~~~p~~~~v~~G~~v~L~C~~~~~~p~~~v~W~k~~~~~~~~i~~~~~~~~~r~~~~~~~~~~~~~~~~L~I~~v~~~   84 (327)
T 2wng_A            5 QVIQPDKSVSVAAGESAILHCTVTSLIPVGPIQWFRGAGPARELIYNQKEGHFPRVTTVSESTKRENMDFSISISNITPA   84 (327)
T ss_dssp             CEECCCSEEEEETTSCEEECCEESCCCSCCCEEEEESCSTTCEEEEETTSSCCTTEEECC---CTTCCBCCEEECSCCGG
T ss_pred             EEEcCCCceEEecCCcEEEEEEccCcCCCceEEEEECCCCCceEEEEcCCCCcceeeeecccccccCceeEEEEccCccc
Confidence            45566778889999999999999887 77899999975431   111 0    122211100000012356999999999


Q ss_pred             CCeeEEEEEecCCCc
Q psy4613          74 DLGSYKCIAKNSLGE   88 (96)
Q Consensus        74 d~g~y~c~~~~~~g~   88 (96)
                      |.|.|.|.+.+..+.
T Consensus        85 D~G~Y~C~a~n~~~~   99 (327)
T 2wng_A           85 DAGTYYCVKFRKGSP   99 (327)
T ss_dssp             GCEEEEEEEEESSTT
T ss_pred             cCeEEEEEeecCCCc
Confidence            999999999987553

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E

Probab=99.09  E-value=8.4e-10  Score=60.46  Aligned_cols=87  Identities=13%  Similarity=0.157  Sum_probs=58.8

Q ss_pred             ceeeecCCCcEEEEEEeee-----cccceeEEeeccceeEec-------ccceEEEEecccc-----ceEEEEEEEccCC
Q psy4613           9 QLVGAPIDTDVTLECYVEA-----YPKSINYWVRDQGDMVIS-------SERYEVESISRSI-----FDFKMRLTIKKIT   71 (96)
Q Consensus         9 ~~~~~~~g~~~~l~c~~~~-----~~~~~~~w~~~~~~~~~~-------~~~~~~~~~~~~~-----~~~~~~l~i~~~~   71 (96)
                      ....+..|+.+.|.|.+.+     .|.+.+.|++++..+...       ..++.+.......     ......|.|.++.
T Consensus       184 ~~~~~~~G~~v~l~C~~~~~~~~~~P~p~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~  263 (363)
T 1wio_A          184 SIVYKKEGEQVEFSFPLAFTVEKLTGSGELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQAL  263 (363)
T ss_dssp             EEEEEETBCCEEEECCCCCCCCSSCEEEEEEEEESSCCCCCCEEEEEECSSCEEEEEEECSSCCBCCSSSSCEEEESSBC
T ss_pred             CceEEecCCEEEEEEEEecccccCCCceeEEEecCCCCccceEEEEEecCCeeeccccccchhhhcccCCceEEEEccCC
Confidence            3445778999999998877     778899999886554321       2233222110000     0012479999999


Q ss_pred             CCCCeeEEEEEecC--CCceEEEEEe
Q psy4613          72 KYDLGSYKCIAKNS--LGEVESSIRL   95 (96)
Q Consensus        72 ~~d~g~y~c~~~~~--~g~~~~~~~l   95 (96)
                      ..|.|.|.|.+.|.  .|.....+.|
T Consensus       264 ~~d~G~Y~C~a~n~~~~g~~~~~~~l  289 (363)
T 1wio_A          264 PQYAGSGNLTLALEAKTGKLHQEVNL  289 (363)
T ss_dssp             GGGCEEEEEEECBTTTTCCEEEEEEE
T ss_pred             cCcCcEEEEEEEEhhhcCeEEEEEeE
Confidence            99999999999999  8876666544

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}

Probab=99.09  E-value=3e-11  Score=65.50  Aligned_cols=90  Identities=22%  Similarity=0.425  Sum_probs=60.2

Q ss_pred             CeEEecCceeeecCCCcEEEEEEe---eecc-cceeEEeeccceeEe--------cccceEEEEeccccceEEEEEEEcc
Q psy4613           2 PVIHVPNQLVGAPIDTDVTLECYV---EAYP-KSINYWVRDQGDMVI--------SSERYEVESISRSIFDFKMRLTIKK   69 (96)
Q Consensus         2 p~~~~~~~~~~~~~g~~~~l~c~~---~~~~-~~~~~w~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~l~i~~   69 (96)
                      |.+..++....+..|+.+.|.|.+   .+.| .+.+.|++++..+..        ...++....  .........|.|.+
T Consensus       227 P~i~~~~~~~~v~~G~~v~L~C~~~~~~g~P~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~--~g~~~~~~~L~i~~  304 (339)
T 3o4o_C          227 PVIISPLKTISASLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQEYSE--NNENYIEVPLIFDP  304 (339)
T ss_dssp             CEECCCSCCCCCCCCSCCCCCCCEEESSSCCSSCEEEEESSSSCSSSSSCSSSCEECCCEECCC--SSSCEEEECCEECS
T ss_pred             CEEecCCceeEeccCCCEEEEEEEECCCCCCCCceEEEEECCeecccccccccceecceEEecc--cCceEEEEEEEEEE
Confidence            444445555667889999999999   7888 778899887654321        111111110  11111234799999


Q ss_pred             CCCCCC-eeEEEEEecCCCceEEEE
Q psy4613          70 ITKYDL-GSYKCIAKNSLGEVESSI   93 (96)
Q Consensus        70 ~~~~d~-g~y~c~~~~~~g~~~~~~   93 (96)
                      +...|. |.|.|.+.|..|.....+
T Consensus       305 v~~~d~~G~Y~C~a~N~~G~~~~~~  329 (339)
T 3o4o_C          305 VTREDLHMDFKCVVHNTLSFQTLRT  329 (339)
T ss_dssp             SCCCSCCCCCEEEEEETTEEECCBC
T ss_pred             echhhcCccEEEEEEeccCceEEEE
Confidence            999997 999999999999765544

>2z35_A T-cell receptor alpha-chain; immune receptor, immune system; 2.20A {Mus musculus} PDB: 2pxy_A 2z31_A 1ac6_A

Probab=99.09  E-value=2.2e-09  Score=50.02  Aligned_cols=77  Identities=14%  Similarity=0.223  Sum_probs=52.4

Q ss_pred             EEecCceeeecCCCcEEEEEEeeecccceeEEeeccc----eeEe-c--------ccceEEEEeccccceEEEEEEEccC
Q psy4613           4 IHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQG----DMVI-S--------SERYEVESISRSIFDFKMRLTIKKI   70 (96)
Q Consensus         4 ~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~----~~~~-~--------~~~~~~~~~~~~~~~~~~~l~i~~~   70 (96)
                      +...+..+.+..|++++|.|.+.+...+.+.|++...    ..+. .        ..++......   ......|.|.++
T Consensus         3 v~q~p~~~~~~~G~~v~L~C~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~---~~~~~~L~I~~~   79 (112)
T 2z35_A            3 VTQTGGQVALSEEDFLTIHCNYSASGYPALFWYVQYPGEGPQFLFRASRDKEKGSSRGFEATYNK---EATSFHLQKASV   79 (112)
T ss_dssp             EECSCSEEEEETTCCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSTTCEEEETTEEEECBT---TTTBCCEEESSC
T ss_pred             eEeCCCcEEEcCCCCEEEEEEECCCCCCeEEEEEECCCCCcEEeEEEecccCCccCCCEEEEEcC---CCCEEEEEECCC
Confidence            4456677889999999999998876677899997531    1111 0        1222221100   011346999999


Q ss_pred             CCCCCeeEEEEEe
Q psy4613          71 TKYDLGSYKCIAK   83 (96)
Q Consensus        71 ~~~d~g~y~c~~~   83 (96)
                      +..|+|.|.|.+.
T Consensus        80 ~~~DsG~Y~C~~~   92 (112)
T 2z35_A           80 QESDSAVYYCALS   92 (112)
T ss_dssp             CSTTCSEEEEEEE
T ss_pred             ChhhCEEEEEEEE
Confidence            9999999999998

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}

Probab=99.09  E-value=3.5e-10  Score=56.80  Aligned_cols=66  Identities=17%  Similarity=0.197  Sum_probs=47.8

Q ss_pred             eeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCC
Q psy4613          11 VGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLG   87 (96)
Q Consensus        11 ~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g   87 (96)
                      ..+..|+.+.|.|.+.+. .+.+.|++++..+.. .....         .....|.|.+++..|.|.|.|.+.|..+
T Consensus       103 ~~v~~G~~v~l~C~~~~~-~~~~~w~k~g~~~~~-~~~~~---------~~~~~L~i~~v~~~D~G~Y~C~a~n~~~  168 (184)
T 2gi7_A          103 PAVSSGGDVTLQCQTRYG-FDQFALYKEGDPAPY-KNPER---------WYRASFPIITVTAAHSGTYRCYSFSSRD  168 (184)
T ss_dssp             CSSCCTTCEEEEEECSSC-CCEEEEEECCCCTTS-CCCCE---------EEEESSSEEEETTCCSEEEEEEEECTTS
T ss_pred             ceecCCCcEEEEEEcCCC-CcEEEEEECCCcCcc-eecCC---------CceEEEEEccCCccCCeEEEEEEEeCCC
Confidence            346689999999997664 468899998654421 11111         1346788999999999999999999654

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A

Probab=99.09  E-value=4.2e-10  Score=55.57  Aligned_cols=72  Identities=17%  Similarity=0.221  Sum_probs=52.9

Q ss_pred             CeEEecCceeeecCCCcEEEEEEeeecc-cceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEE
Q psy4613           2 PVIHVPNQLVGAPIDTDVTLECYVEAYP-KSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKC   80 (96)
Q Consensus         2 p~~~~~~~~~~~~~g~~~~l~c~~~~~~-~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c   80 (96)
                      |.+...+....+..|+.+.|.|.+.+.+ .+.+.|++++..+... .               ..+.+.++...|.|.|.|
T Consensus         5 p~i~~~p~~~~v~~G~~v~l~C~~~~~p~~~~~~W~~~g~~~~~~-~---------------~~~~~~~~~~~d~G~Y~C   68 (170)
T 3ry4_A            5 AVLKLEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTH-T---------------QPSYRFKANNNDSGEYTC   68 (170)
T ss_dssp             CEEEEESCCSEEETTCEEEEEEESCCCSSSSCEEEEETTEECTTC-C---------------SSEEEEECCGGGCEEEEE
T ss_pred             CEEEeCCCCeEEECCCcEEEEEEecCCCCcceEEEEECCeEcccC-c---------------cceEEEecccccCeEEEE
Confidence            5566666666788999999999998876 5689999986544211 1               224456789999999999


Q ss_pred             EEecCCCce
Q psy4613          81 IAKNSLGEV   89 (96)
Q Consensus        81 ~~~~~~g~~   89 (96)
                      .+.+.....
T Consensus        69 ~~~~~~~s~   77 (170)
T 3ry4_A           69 QTGQTSLSD   77 (170)
T ss_dssp             EETTSBCCC
T ss_pred             EEeCCCceE
Confidence            998755443

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X

Probab=99.09  E-value=3.1e-10  Score=57.69  Aligned_cols=88  Identities=18%  Similarity=0.346  Sum_probs=56.3

Q ss_pred             EecCceeeecCCCcEEEEEEeeecc----cceeEEeeccce-------eEe-c------------ccceEEEEeccccce
Q psy4613           5 HVPNQLVGAPIDTDVTLECYVEAYP----KSINYWVRDQGD-------MVI-S------------SERYEVESISRSIFD   60 (96)
Q Consensus         5 ~~~~~~~~~~~g~~~~l~c~~~~~~----~~~~~w~~~~~~-------~~~-~------------~~~~~~~~~~~~~~~   60 (96)
                      ..++..+.+..|+.+.|.|.+.+.+    .+.+.|++.+..       ... .            ..+..+..  .....
T Consensus         4 ~~~~~~v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~   81 (214)
T 3jz7_A            4 TTPEQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVHFTS--NDVKS   81 (214)
T ss_dssp             --CEEEEEEETTSCEEECCBCCCCTTCCSCCEEEEEEEESSSSCCSEEEEEEETTEEECCCCGGGTTTEEESC--SCGGG
T ss_pred             ecCCceEEEecCCCEEEEEEEecCCCCCCcEEEEEEecCCCCCCCceEEEEEeCCeEccccCCccccceEEec--cCccC
Confidence            4455677899999999999998866    468999874311       110 0            11111110  00000


Q ss_pred             EEEEEEEccCCCCCCeeEEEEEecCCCceEEEEE
Q psy4613          61 FKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIR   94 (96)
Q Consensus        61 ~~~~l~i~~~~~~d~g~y~c~~~~~~g~~~~~~~   94 (96)
                      ....|.|.+++..|.|.|.|.+.+..|.....+.
T Consensus        82 ~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~  115 (214)
T 3jz7_A           82 GDASINVTNLQLSDIGTYQCKVKKAPGVANKKFL  115 (214)
T ss_dssp             TBCCEEECSCCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred             CcccEEEccCChhhCeEEEEEEEeCCCccccEEE
Confidence            1356999999999999999999998776555443

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A

Probab=99.09  E-value=6.9e-11  Score=59.56  Aligned_cols=61  Identities=18%  Similarity=0.269  Sum_probs=47.9

Q ss_pred             ecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCce
Q psy4613          13 APIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEV   89 (96)
Q Consensus        13 ~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~   89 (96)
                      +..|..+.|.|.+   |.|.+.|++++..+... ..            ....|.|.++...|.|.|.|.+.|..|..
T Consensus       119 ~~~G~~v~l~C~~---p~p~i~W~k~g~~i~~~-~~------------~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~  179 (186)
T 1jbj_A          119 SRGDGSVLLTCGL---TDKTIKWLKDGSIISPL-NA------------TKNTWNLGNNAKDPRGTYQCQGAKETSNP  179 (186)
T ss_dssp             CSSSCEEEEECSS---SCSCEEEEETTEECCCS-SC------------CSSCCEEEETTSCCEEEEEEEESSCEEEE
T ss_pred             cCCCCeEEEEeeC---CCCeEEEEECCEECccc-CC------------CcceEEECCCCcCcCEEEEEEEEcCcCCc
Confidence            3489999999998   78899999987654311 11            12568889999999999999999987755

>3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens}

Probab=99.09  E-value=1e-08  Score=53.73  Aligned_cols=72  Identities=14%  Similarity=0.244  Sum_probs=49.5

Q ss_pred             eeecCCCcEEEEEEeeecc--cceeEEeecc--ceeE-----e-----------cccceEEEEeccccceEEEEEEEccC
Q psy4613          11 VGAPIDTDVTLECYVEAYP--KSINYWVRDQ--GDMV-----I-----------SSERYEVESISRSIFDFKMRLTIKKI   70 (96)
Q Consensus        11 ~~~~~g~~~~l~c~~~~~~--~~~~~w~~~~--~~~~-----~-----------~~~~~~~~~~~~~~~~~~~~l~i~~~   70 (96)
                      ..+..|+.+.|.|.+.+.+  .+.+.|+++.  ..+.     .           ...++.+.....   .....|.|.++
T Consensus       144 ~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~---~~~~~L~I~~v  220 (256)
T 3ux9_B          144 GLVQPGGSLRLSCAASGFTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNS---KNTLYLQMNSL  220 (256)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSEEEEEEECTTCCEEEEEEECSSSSCEEECGGGTTTEEEEEETT---TTEEEEEECSC
T ss_pred             eEEcCCCeEEEEEEEeCCcccccEEEEEEECCCCCcEEEEEEccCCCceecCccccceEEEEecCC---CCEEEEEECCC
Confidence            3478899999999998766  6789999852  1110     0           011333322111   12356999999


Q ss_pred             CCCCCeeEEEEEecC
Q psy4613          71 TKYDLGSYKCIAKNS   85 (96)
Q Consensus        71 ~~~d~g~y~c~~~~~   85 (96)
                      +..|+|.|.|.+.+.
T Consensus       221 ~~~DsG~Y~C~~~~~  235 (256)
T 3ux9_B          221 RAEDTAVYYCARYID  235 (256)
T ss_dssp             CGGGCEEEEEEEEET
T ss_pred             ChhhCEEEEEEEEcC
Confidence            999999999999985

>3d9a_H Heavy chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_H 1gpo_H 3ks0_H* 1dqd_H 1ndm_B 1nak_H 1dqq_B 1dqm_H 1dqj_B 1nby_B 1nbz_B 1xgu_B 1ndg_B 1xgt_B 1xgp_B 1xgq_B 1xgr_B 1s5i_H 1f8t_H 1f90_H ...

Probab=99.09  E-value=9.3e-10  Score=56.15  Aligned_cols=76  Identities=18%  Similarity=0.284  Sum_probs=50.7

Q ss_pred             ecCCCcEEEEEEeeec-ccc-eeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCceE
Q psy4613          13 APIDTDVTLECYVEAY-PKS-INYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVE   90 (96)
Q Consensus        13 ~~~g~~~~l~c~~~~~-~~~-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~~   90 (96)
                      +..|..+.|.|.+.+. |.| .+.|++++..+....... ... . ..+...+.|.|......| |.|.|.+.|..|...
T Consensus       130 ~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~~~~~~~~~~-~~~-~-~~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~  205 (210)
T 3d9a_H          130 AQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPA-VLQ-S-DLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTK  205 (210)
T ss_dssp             CCCSSEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCC-EEE-T-TEEEEEEEEEEEGGGTTT-SCCEEEEEEGGGTEE
T ss_pred             cccCCcEEEEEEEeeEecCCcEEEEeeCCcccceEEcCC-ccC-C-CcEEEEEEEEEcHHHcCC-CcEEEEEEeCCCCcc
Confidence            4578999999999986 778 999998765321110000 000 0 112234678888888766 999999999888755


Q ss_pred             EE
Q psy4613          91 SS   92 (96)
Q Consensus        91 ~~   92 (96)
                      ..
T Consensus       206 ~~  207 (210)
T 3d9a_H          206 VD  207 (210)
T ss_dssp             EE
T ss_pred             cc
Confidence            43

>3bp6_A Programmed cell death protein 1; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3rnk_A 3sbw_A 3bp5_A 1npu_A 3rnq_A

Probab=99.09  E-value=1.6e-08  Score=47.41  Aligned_cols=79  Identities=14%  Similarity=0.272  Sum_probs=52.6

Q ss_pred             EecCceeeecCCCcEEEEEEeeecc-cceeEEeecc--c--eeEe----------cccceEEEEeccccceEEEEEEEcc
Q psy4613           5 HVPNQLVGAPIDTDVTLECYVEAYP-KSINYWVRDQ--G--DMVI----------SSERYEVESISRSIFDFKMRLTIKK   69 (96)
Q Consensus         5 ~~~~~~~~~~~g~~~~l~c~~~~~~-~~~~~w~~~~--~--~~~~----------~~~~~~~~~~~~~~~~~~~~l~i~~   69 (96)
                      ...+..+.+..|++++|.|.+.... ...+.|++..  .  ..+.          ...++......   ......|.|.+
T Consensus         3 ~q~p~~~~v~~G~~vtL~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~~Rf~~~~~~---~~~~~~L~I~~   79 (117)
T 3bp6_A            3 TFYPAWLTVSEGANATFTCSLSNWSEDLMLNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQIIQLP---NRHDFHMNILD   79 (117)
T ss_dssp             EEECSEEEECTTCCEEEEEEESSCCTTCEEEEEEECTTCCEEEEEEEETTEEEESSCTTEEEEECT---TSSEEEEEESS
T ss_pred             eecCCcEEEeCCCCEEEEeEeecCCCCCEEEEEEeCCCCCceEEEEECCCCccccccCcEEEEEcC---CCCEEEEEECc
Confidence            4456677899999999999987643 4689999752  1  1111          01233322111   11345799999


Q ss_pred             CCCCCCeeEEEEEecCC
Q psy4613          70 ITKYDLGSYKCIAKNSL   86 (96)
Q Consensus        70 ~~~~d~g~y~c~~~~~~   86 (96)
                      ++.+|+|.|.|.+.+..
T Consensus        80 ~~~~Dsg~Y~C~~~~~~   96 (117)
T 3bp6_A           80 TRRNDSGIYLCGAISLH   96 (117)
T ss_dssp             CCGGGCEEEEEEEEECS
T ss_pred             CCHHHCEEEEEEEEecC
Confidence            99999999999988643

>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens}

Probab=99.08  E-value=3.3e-09  Score=55.67  Aligned_cols=81  Identities=15%  Similarity=0.229  Sum_probs=54.8

Q ss_pred             CeEEecCceeeecCCCcEEEEEEeeec--ccceeEEeecc--ce--eEe--c------------ccceEEEEeccccceE
Q psy4613           2 PVIHVPNQLVGAPIDTDVTLECYVEAY--PKSINYWVRDQ--GD--MVI--S------------SERYEVESISRSIFDF   61 (96)
Q Consensus         2 p~~~~~~~~~~~~~g~~~~l~c~~~~~--~~~~~~w~~~~--~~--~~~--~------------~~~~~~~~~~~~~~~~   61 (96)
                      |....++..+.+..|+.+.|.|.+.+.  +.+.+.|++..  ..  .+.  .            ..++.+.....   ..
T Consensus         7 ~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~---~~   83 (256)
T 3juy_B            7 QVQLVQSGAEVKKPGASVKVSCQASGYRFSHFTVHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTS---AN   83 (256)
T ss_dssp             CCEEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETT---TT
T ss_pred             eEEEEecCCceecCCCeEEEEEEeecccccCceEEEEEECCCCCcEEEEEEEcCCCcEeecccCcceEEEEEecC---CC
Confidence            344556677889999999999999873  66789998742  11  110  0            12333321110   12


Q ss_pred             EEEEEEccCCCCCCeeEEEEEecC
Q psy4613          62 KMRLTIKKITKYDLGSYKCIAKNS   85 (96)
Q Consensus        62 ~~~l~i~~~~~~d~g~y~c~~~~~   85 (96)
                      ...|.|.+++..|+|.|.|.+.+.
T Consensus        84 ~~~L~I~~v~~~DsG~Y~C~~~~~  107 (256)
T 3juy_B           84 TAYMELRSLRSADTAVYYCARVGE  107 (256)
T ss_dssp             EEEEEECSCCGGGCEEEEEEECCC
T ss_pred             EEEEEECCCCcccCEEEEEeEEec
Confidence            357999999999999999999886

>1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H

Probab=99.08  E-value=1.2e-09  Score=56.05  Aligned_cols=77  Identities=14%  Similarity=0.265  Sum_probs=48.9

Q ss_pred             ecCCCcEEEEEEeee-cccc-eeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCceE
Q psy4613          13 APIDTDVTLECYVEA-YPKS-INYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVE   90 (96)
Q Consensus        13 ~~~g~~~~l~c~~~~-~~~~-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~~   90 (96)
                      +..|..+.|.|.+.+ .|.| .+.|++++..+....... ..  ....+...+.|.|..... |.|.|.|.+.|..+...
T Consensus       136 ~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~~~~~~~~~~-~~--~~~~~~~~s~L~i~~~~~-d~g~Y~C~a~n~~~~~~  211 (219)
T 1c1e_H          136 AQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPA-VL--QSDLYTLSSSVTVPSSPR-PSETVTCNVAHPASSTK  211 (219)
T ss_dssp             SCCSSEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCC-EE--SSSCEEEEEEEEEESSST-TTSCCEEEEEEGGGTEE
T ss_pred             cccCCeEEEEEEcccccCCCeEEEEEeCCcccceEecCC-cc--cCCeEEEEEEEEEecccC-CCCEEEEEEEeCCCCcc
Confidence            457999999999998 7888 999998865421100000 00  001122345688844443 56999999999877654


Q ss_pred             EEE
Q psy4613          91 SSI   93 (96)
Q Consensus        91 ~~~   93 (96)
                      ...
T Consensus       212 ~~~  214 (219)
T 1c1e_H          212 VDK  214 (219)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            443

>2qhl_A Novel immune-type receptor 10; immunoglobulin variable domain-like beta-sandwich, immune system; 1.56A {Ictalurus punctatus} PDB: 3b5t_A 2qjd_A 2qte_A 2qqq_A

Probab=99.08  E-value=1.1e-09  Score=50.95  Aligned_cols=74  Identities=22%  Similarity=0.312  Sum_probs=51.4

Q ss_pred             cCceeeecCCCcEEEEEEee-ecccceeEEeeccc----eeEe--c-------------ccceEEEEeccccceEEEEEE
Q psy4613           7 PNQLVGAPIDTDVTLECYVE-AYPKSINYWVRDQG----DMVI--S-------------SERYEVESISRSIFDFKMRLT   66 (96)
Q Consensus         7 ~~~~~~~~~g~~~~l~c~~~-~~~~~~~~w~~~~~----~~~~--~-------------~~~~~~~~~~~~~~~~~~~l~   66 (96)
                      .+..+.+..|++++|.|.+. +.+.+.+.|++...    ..+.  .             ..++....   .  .....|.
T Consensus         5 ~p~~~~~~~G~~v~L~C~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~~R~~~~~---~--~~~~~L~   79 (111)
T 2qhl_A            5 ELHVKTVKRGENVTMECSMSKVKDKDKLAWYRQSFGKVPQYFVRYYSSNSGYKFAEGFKDSRFSMTV---N--DQKFDLN   79 (111)
T ss_dssp             BCEEEECCTTCCEEECCBCTTCSCGGGEEEEEECTTBCCEEEEEECSSSSCEEECTTCCCTTEEEEE---S--SSBEEEE
T ss_pred             CCceEEEeCCCCEEEEEEccCCcccceEEEEEecCCCCCEEEEEEeccCCccccccCCCCCcEEEEE---c--CCeEEEE
Confidence            45567789999999999987 66677899987531    1111  0             12222221   0  1235799


Q ss_pred             EccCCCCCCeeEEEEEecC
Q psy4613          67 IKKITKYDLGSYKCIAKNS   85 (96)
Q Consensus        67 i~~~~~~d~g~y~c~~~~~   85 (96)
                      |.+++.+|+|.|.|.+.+.
T Consensus        80 I~~~~~~DsG~Y~C~~~~~   98 (111)
T 2qhl_A           80 IIGTREDDGGEYFCGEVEG   98 (111)
T ss_dssp             ESSCCGGGCEEEEEEEEET
T ss_pred             ECCCChhHCEEEEEEEccC
Confidence            9999999999999999875

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}

Probab=99.08  E-value=1.9e-09  Score=57.29  Aligned_cols=76  Identities=22%  Similarity=0.341  Sum_probs=51.7

Q ss_pred             CeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEE
Q psy4613           2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCI   81 (96)
Q Consensus         2 p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~   81 (96)
                      |.+......+.+..|+.+.|.|.+.+.    +.|++++..+.   .+.  .......  ....|.|.+++..|.|.|.|.
T Consensus         1 P~i~~~~~~~~v~~G~~v~L~C~~~~~----v~W~~~~~~~~---~~~--~~~~~~~--~~~~L~i~~~~~~D~G~Y~C~   69 (289)
T 3mjg_X            1 LVVTPPGPELVLNVSSTFVLTCSGSAP----VVWERMSQEPP---QEM--AKAQDGT--FSSVLTLTNLTGLDTGEYFCT   69 (289)
T ss_dssp             CCBCSSCSEEECCTTCCEEEEEEESSC----CEEEBTTBCCS---EEE--EECTTSC--EEEEEEECSCCGGGCEEEEEE
T ss_pred             CeecCCCCeEEEeCCCcEEEEEeccce----EEEECCCCCcc---cce--eccCCCc--eeEEEEEccCChhhCEEEEEE
Confidence            445555566788999999999998764    89999875541   111  1111111  247899999999999999999


Q ss_pred             EecCCCc
Q psy4613          82 AKNSLGE   88 (96)
Q Consensus        82 ~~~~~g~   88 (96)
                      +.|..|.
T Consensus        70 a~n~~g~   76 (289)
T 3mjg_X           70 HNDSRGL   76 (289)
T ss_dssp             CCC----
T ss_pred             EcccCCC
Confidence            9987764

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D

Probab=99.08  E-value=2.1e-09  Score=57.89  Aligned_cols=70  Identities=13%  Similarity=0.088  Sum_probs=48.5

Q ss_pred             ecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCc
Q psy4613          13 APIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGE   88 (96)
Q Consensus        13 ~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~   88 (96)
                      +..|+.+.|.|.+.+ +.+.+.|++++.............     .......|.|.+++..|.|.|.|.+.|..|.
T Consensus       130 v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~-----~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~  199 (316)
T 3vh8_G          130 VKSGERVILQCWSDI-MFEHFFLHKEGISKDPSRLVGQIH-----DGVSKANFSIGPMMLALAGTYRCYGSVTHTP  199 (316)
T ss_dssp             EETTCCEEEEEEESS-CCSEEEEEETTCCSCCEEEECEEE-----TTEEEEEEEECSCCGGGCEEEEEEEECTTCT
T ss_pred             cCCCCeEEEEEcCCC-CCcEEEEEECCCccccceeeeeec-----CCCceEEEEECCCChhhCceEEEEEecCCCC
Confidence            678999999999854 566888998865442110000000     0013467999999999999999999987663

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A*

Probab=99.08  E-value=1.7e-08  Score=51.09  Aligned_cols=77  Identities=12%  Similarity=0.241  Sum_probs=50.0

Q ss_pred             cCCCcEEEEEEee-ecccceeEEeeccceeEecccceEEEEecc-ccceEEEEEEEccCCCCCCeeEEEEEecCCCceEE
Q psy4613          14 PIDTDVTLECYVE-AYPKSINYWVRDQGDMVISSERYEVESISR-SIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVES   91 (96)
Q Consensus        14 ~~g~~~~l~c~~~-~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~~~   91 (96)
                      ..|..+.|.|.+. +.|.|.+.|++++..+...  ......... ..+....   +..+...|.|.|.|.+.|..|....
T Consensus       119 ~~g~~~~l~C~~~~g~P~p~i~W~k~g~~l~~~--~~~~~~~~~~~~~~~~~---~~~v~~~d~g~Y~C~a~n~~~~~s~  193 (201)
T 1dr9_A          119 PTSNIRRIICSTSGGFPEPHLSWLENGEELNAI--NTTVSQDPETELYAVSS---KLDFNMTTNHSFMCLIKYGHLRVNQ  193 (201)
T ss_dssp             SSTTEEEEEEEEEEESSCEEEEEEESSCEECCS--EEEEEECTTTCCEEEEE---EEEEETTSCEEEEEEEEETTCCEEE
T ss_pred             CCCCeEEEEEecCCccCCCEEEEEECCEECccc--cceEEecCCCcEEEEEE---EEEEEecCCCEEEEEEecCcceeee
Confidence            4578899999995 8899999999986554311  112222111 1111112   2334457899999999999998877


Q ss_pred             EEEe
Q psy4613          92 SIRL   95 (96)
Q Consensus        92 ~~~l   95 (96)
                      .+.+
T Consensus       194 ~~~~  197 (201)
T 1dr9_A          194 TFNW  197 (201)
T ss_dssp             EEEE
T ss_pred             EEec
Confidence            6653

>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II, MEM receptor, molecular mimicry, multiple sclerosis, immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo sapiens}

Probab=99.08  E-value=2.6e-09  Score=56.79  Aligned_cols=79  Identities=19%  Similarity=0.303  Sum_probs=55.5

Q ss_pred             eEEecCceeeecCCCcEEEEEEeeecccceeEEeeccc----eeEe--------------cccceEEEEeccccceEEEE
Q psy4613           3 VIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQG----DMVI--------------SSERYEVESISRSIFDFKMR   64 (96)
Q Consensus         3 ~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~----~~~~--------------~~~~~~~~~~~~~~~~~~~~   64 (96)
                      .+..++..+.+..|+++.|.|.+.+.+.+.+.|++...    ....              ...++.+....    .....
T Consensus        26 ~v~~~p~~v~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~----~~~~s  101 (279)
T 2wbj_D           26 VVSQHPSWVISKSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHAS----LTLST  101 (279)
T ss_dssp             CEEEECSEEEEETTSCEEEEEEESSSCEEEEEEEEECSSSCCEEEEEEESSSCCCCCSSSCSSSEEEEECS----SSEEE
T ss_pred             eEEeCCCeEEecCCCeEEEEEEeCCCCCCeEEEEEeCCCCCeEEEEEEecCCcceecCCccCCcEEEEeCC----CCEEE
Confidence            44556677889999999999999877888999998531    1110              01233322110    12457


Q ss_pred             EEEccCCCCCCeeEEEEEecC
Q psy4613          65 LTIKKITKYDLGSYKCIAKNS   85 (96)
Q Consensus        65 l~i~~~~~~d~g~y~c~~~~~   85 (96)
                      |.|.+++..|.|.|.|.+.+.
T Consensus       102 L~I~~v~~~D~G~Y~C~~~~~  122 (279)
T 2wbj_D          102 LTVTSAHPEDSSFYICSARDL  122 (279)
T ss_dssp             EEESSCCGGGCEEEEEEEEET
T ss_pred             EEEccCCccCCEEEEEEEccc
Confidence            999999999999999999883

>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.08  E-value=3.5e-11  Score=62.24  Aligned_cols=79  Identities=16%  Similarity=0.230  Sum_probs=50.6

Q ss_pred             CCCcEEEEEEeeecccc--eeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCceEEE
Q psy4613          15 IDTDVTLECYVEAYPKS--INYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVESS   92 (96)
Q Consensus        15 ~g~~~~l~c~~~~~~~~--~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~~~~   92 (96)
                      .|+.+.|.|.+.+.+++  .+.|++++..+................+...+.|.|......|.|.|.|.+.|..+.....
T Consensus       149 ~g~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~  228 (234)
T 2j6e_L          149 QANKATLVCLISDFFPGAVTVAWKADGAPVKAGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKT  228 (234)
T ss_dssp             TTSCCCEEECCCBCSSCCCEEEEEETTEECCSSEEECCCCCCTTSCCBCCEEECCCGGGTTTSCCEEEEEEBTTBCCCEE
T ss_pred             cCCceEEEEEEEEEcCCceEEEEEECCEECCCCccccCceECCCCCEEEEEEEEECHHHcCCCCeEEEEEEeCCCceEEe
Confidence            57899999999885433  8999998655421100000000111122234678888888999999999999987765544


Q ss_pred             E
Q psy4613          93 I   93 (96)
Q Consensus        93 ~   93 (96)
                      +
T Consensus       229 ~  229 (234)
T 2j6e_L          229 V  229 (234)
T ss_dssp             E
T ss_pred             c
Confidence            3

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens}

Probab=99.08  E-value=8.6e-10  Score=55.84  Aligned_cols=87  Identities=20%  Similarity=0.227  Sum_probs=54.9

Q ss_pred             cCceeeecCCCcEEEEEEeee-cccceeEEeeccceeEe--cccc--eEEEE-ec----cccceEEEEEEEccCCCCCCe
Q psy4613           7 PNQLVGAPIDTDVTLECYVEA-YPKSINYWVRDQGDMVI--SSER--YEVES-IS----RSIFDFKMRLTIKKITKYDLG   76 (96)
Q Consensus         7 ~~~~~~~~~g~~~~l~c~~~~-~~~~~~~w~~~~~~~~~--~~~~--~~~~~-~~----~~~~~~~~~l~i~~~~~~d~g   76 (96)
                      .+..+.+..|+++.|.|.+.+ .+.+.+.|++++..+..  ....  ..... ..    +........|.|.+++..|.|
T Consensus         4 ~p~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G   83 (193)
T 2if7_A            4 TPLMVNGILGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQSYSLQLSNLKMEDTG   83 (193)
T ss_dssp             CCEEEEEETTSCEEECCCCCCCSCCCEEEEEETTEEEEEEECCSSSCCEEEECCHHHHTTEEECTTCCEEECSCCGGGCE
T ss_pred             CCeEEEEEecCeEEEeccCCCcccccEEEEEECCEEEEEEecccCCCCceeecCccccccEEECCCeEEEECCCCcccCc
Confidence            455677899999999999875 44568999987543221  1000  00000 00    000001256999999999999


Q ss_pred             eEEEEEecCCCceEEEE
Q psy4613          77 SYKCIAKNSLGEVESSI   93 (96)
Q Consensus        77 ~y~c~~~~~~g~~~~~~   93 (96)
                      .|.|.+.+..+.....+
T Consensus        84 ~Y~C~~~~~~~~~~~~~  100 (193)
T 2if7_A           84 SYRAQISTKTSAKLSSY  100 (193)
T ss_dssp             EEEEEEECSSCEEEEEE
T ss_pred             eEEEEEEecCCCeEEEE
Confidence            99999999877544433

>3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*

Probab=99.07  E-value=2e-10  Score=59.44  Aligned_cols=74  Identities=16%  Similarity=0.234  Sum_probs=48.3

Q ss_pred             CCCcEEEEEEeeec-c-cceeEEeeccceeEecc-cceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCc
Q psy4613          15 IDTDVTLECYVEAY-P-KSINYWVRDQGDMVISS-ERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGE   88 (96)
Q Consensus        15 ~g~~~~l~c~~~~~-~-~~~~~w~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~   88 (96)
                      .|+.+.|.|.+.+. | .+.+.|++++..+.... ............+.....|.+......|.|.|.|.+.|....
T Consensus       149 ~g~~v~l~C~~~~~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~  225 (237)
T 3sob_L          149 KSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLS  225 (237)
T ss_dssp             HHTEEEEEEEEEEEBSSCCEEEEEETTEECCSSEEEEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCS
T ss_pred             cCCceEEEEEEcccCCCceEEEEEECCCCCCCceeecccccccCCCcEEEEEEEEEcHHHccCCCcEEEEEeeCCCC
Confidence            47889999999884 4 47999999865543110 000000011112224567888888889999999999998653

>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1

Probab=99.07  E-value=5.9e-09  Score=54.36  Aligned_cols=79  Identities=15%  Similarity=0.257  Sum_probs=53.3

Q ss_pred             eEEecCceeeecCCCcEEEEEEeeecc--cceeEEeeccc--ee--Ee--------------cccceEEEEeccccceEE
Q psy4613           3 VIHVPNQLVGAPIDTDVTLECYVEAYP--KSINYWVRDQG--DM--VI--------------SSERYEVESISRSIFDFK   62 (96)
Q Consensus         3 ~~~~~~~~~~~~~g~~~~l~c~~~~~~--~~~~~w~~~~~--~~--~~--------------~~~~~~~~~~~~~~~~~~   62 (96)
                      .+..+ ..+.+..|+.+.|.|.+.+.+  .+.+.|++...  ..  ..              ...++.+.....   ...
T Consensus         5 ~v~~p-~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~---~~~   80 (247)
T 2ghw_B            5 QLVQS-GGGVVQPGKSLRLSCAASGFAFSSYAMHWVRQAPGKGLEWVAVISYDGSNKYYADSVKGRFTISRDNS---KNT   80 (247)
T ss_dssp             EEEEE-CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEETT---TTE
T ss_pred             EEEec-CCEEEecCCcEEEEEEeccccCCCceEEEEEeCCCCceEEEEEEecCCCceeeCccccCcEEEEEeCC---CCE
Confidence            34444 347789999999999999876  57899988421  11  10              112333322100   023


Q ss_pred             EEEEEccCCCCCCeeEEEEEecC
Q psy4613          63 MRLTIKKITKYDLGSYKCIAKNS   85 (96)
Q Consensus        63 ~~l~i~~~~~~d~g~y~c~~~~~   85 (96)
                      ..|.|.+++..|+|.|.|.+.+.
T Consensus        81 ~~L~I~~v~~~D~G~Y~C~~~n~  103 (247)
T 2ghw_B           81 LYLQMNSLRAEDTAVYYCARDRS  103 (247)
T ss_dssp             EEEEECSCCGGGCEEEEEEEEET
T ss_pred             EEEEECcCCHHHCEEEEEeeecc
Confidence            57999999999999999999886

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*

Probab=99.07  E-value=5.3e-11  Score=60.84  Aligned_cols=65  Identities=25%  Similarity=0.382  Sum_probs=48.9

Q ss_pred             CCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccC-CCCCCeeEEEEEecCCCc
Q psy4613          15 IDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKI-TKYDLGSYKCIAKNSLGE   88 (96)
Q Consensus        15 ~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~-~~~d~g~y~c~~~~~~g~   88 (96)
                      .|..+.|.|.  +.|.+.+.|++++..+...........       ....|.|.++ ...|.|.|.|.+.|..|.
T Consensus       127 ~G~~v~L~C~--g~p~p~i~W~k~~~~l~~~~~~~~~~~-------~~~~L~I~~v~~~~D~G~Y~C~A~N~~g~  192 (204)
T 1sy6_A          127 SGTTVILTCP--QYPGSEILWQHNDKNIGGDEDDKNIGS-------DEDHLSLKEFSELEQSGYYVCYPRGSKPE  192 (204)
T ss_dssp             ETTEEEEECS--CCCSSCEEEEETTEEESCCTTCTTEEE-------ETTEEEETTCCHHHHCEEEEEEETTSCGG
T ss_pred             cCCcEEEEcC--CCCCCceEEEECCEECCCccCCceEec-------CCCEEEEeeCCccccCEEEEEEeccCCCC
Confidence            7999999999  778889999998765432211111111       1257999999 999999999999999885

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*

Probab=99.07  E-value=2.9e-10  Score=59.83  Aligned_cols=85  Identities=15%  Similarity=0.241  Sum_probs=56.5

Q ss_pred             CceeeecCCCcEEEEEEe---eecccceeEEeeccceeEec-----------------cc----ceEEEEeccccceEEE
Q psy4613           8 NQLVGAPIDTDVTLECYV---EAYPKSINYWVRDQGDMVIS-----------------SE----RYEVESISRSIFDFKM   63 (96)
Q Consensus         8 ~~~~~~~~g~~~~l~c~~---~~~~~~~~~w~~~~~~~~~~-----------------~~----~~~~~~~~~~~~~~~~   63 (96)
                      +....+..|+.+.|.|.+   .+.|.+.+.|++.+......                 ..    +....   ........
T Consensus       125 p~~~~v~~G~~v~L~C~~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~---~~~~~~~~  201 (268)
T 3mj6_A          125 PRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSGKFQSLGRFRNRVDLT---GDISRNDG  201 (268)
T ss_dssp             CSEEEEETTCCEEECCBCEESSSSCCCEEEEEEECTTCSSCEEEEEEETTSSSCEEECSSTTTTTEEEC---SCGGGTBC
T ss_pred             CCccccccCCcEEEEEEecCCCCCCccceEEEecCCCCCcceeEEEecCCCCccccccccccccceEee---ccCCCCeE
Confidence            345678899999999999   45688899999843221100                 00    10000   00001235


Q ss_pred             EEEEccCCCCCCeeEEEEEecCCCceEEEEEe
Q psy4613          64 RLTIKKITKYDLGSYKCIAKNSLGEVESSIRL   95 (96)
Q Consensus        64 ~l~i~~~~~~d~g~y~c~~~~~~g~~~~~~~l   95 (96)
                      .|.|.++...|.|.|.|.+.|..|.....+.|
T Consensus       202 ~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l  233 (268)
T 3mj6_A          202 SIKLQTVKESDQGIYTCSIYVGKLESRKTIVL  233 (268)
T ss_dssp             CEEECSCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred             EEEECcCChhhCeEEEEEEEcCCceEEEEEEE
Confidence            79999999999999999999988876666544

>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A

Probab=99.07  E-value=2.9e-09  Score=54.08  Aligned_cols=66  Identities=15%  Similarity=0.179  Sum_probs=45.0

Q ss_pred             eecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecC
Q psy4613          12 GAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNS   85 (96)
Q Consensus        12 ~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~   85 (96)
                      .+..|+.++|.|.+.+ +.+.+.|++++..+...........     ......|.|.+++  |.|.|.|.+.+.
T Consensus       118 ~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~~-----~~~~~~L~i~~v~--d~G~Y~C~a~~~  183 (201)
T 1nkr_A          118 TVLAGENVTLSCSSRS-SYDMYHLSREGEAHERRLPAGPKVN-----GTFQADFPLGPAT--HGGTYRCFGSFH  183 (201)
T ss_dssp             EECTTCEEEEEEEESS-CCSEEEEEETTCSSCEEEECEEEET-----TEEEEEEEEEECC--SCEEEEEEEEET
T ss_pred             ccCCCCeEEEEEeCCC-CCceEEEEECCcccCcccccccccC-----CceEEEEEeCCcC--CCeeEEEEEEcC
Confidence            5788999999999876 5678899998754432111111000     0024678899988  999999998754

>3bj9_1 Immunoglobulin IOTA chain, immunoglobulin lambda- like polypeptide 1; immunoglobulin domain, beta sheet, polymorphism, immune system; 2.00A {Homo sapiens} PDB: 2h3n_A

Probab=99.07  E-value=1.7e-08  Score=47.21  Aligned_cols=77  Identities=17%  Similarity=0.326  Sum_probs=50.4

Q ss_pred             EecCceeeecCCCcEEEEEEeeec---ccceeEEeeccc----eeEec-------------ccceEEEEeccccceEEEE
Q psy4613           5 HVPNQLVGAPIDTDVTLECYVEAY---PKSINYWVRDQG----DMVIS-------------SERYEVESISRSIFDFKMR   64 (96)
Q Consensus         5 ~~~~~~~~~~~g~~~~l~c~~~~~---~~~~~~w~~~~~----~~~~~-------------~~~~~~~~~~~~~~~~~~~   64 (96)
                      ..++ .+.+..|++++|.|.+...   +...+.|++...    ..+..             ..++.......   .....
T Consensus         3 ~q~~-~~~~~~G~~v~L~C~~~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~---~~~~s   78 (116)
T 3bj9_1            3 HQPP-AMSSALGTTIRLTCTLRNDHDIGVYSVYWYQQRPGHPPRFLLRYFSQSDKSQGPQVPPRFSGSKDVA---RNRGY   78 (116)
T ss_dssp             ECCS-EEEEETTCCEEEEEEECSSSCGGGCCEEEEEECTTSCCEEEEEEEETTEEEECTTCCTTEEEEEEGG---GTEEE
T ss_pred             ecCC-cEEEcCCCcEEEEEEeecCccCCCceEEEEEeCCCCCcEEEEEEecCCCceeCccCCCcEEEEecCC---CceEE
Confidence            3444 5789999999999998754   456899987531    11110             11222221110   01347


Q ss_pred             EEEccCCCCCCeeEEEEEecC
Q psy4613          65 LTIKKITKYDLGSYKCIAKNS   85 (96)
Q Consensus        65 l~i~~~~~~d~g~y~c~~~~~   85 (96)
                      |.|.+++..|+|.|.|.+.+.
T Consensus        79 L~I~~~~~~DsG~Y~C~~~~~   99 (116)
T 3bj9_1           79 LSISELQPEDEAMYYCAMGAR   99 (116)
T ss_dssp             EEECSCCGGGCEEEEEEECCS
T ss_pred             EEECCCChhHCEEEEEEEeCC
Confidence            999999999999999999865

>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=99.07  E-value=6.8e-09  Score=55.31  Aligned_cols=77  Identities=17%  Similarity=0.246  Sum_probs=52.6

Q ss_pred             CceeeecCCCcEEEEEEeeecc--cceeEEeeccc--ee--Ee--------------cccceEEEEeccccceEEEEEEE
Q psy4613           8 NQLVGAPIDTDVTLECYVEAYP--KSINYWVRDQG--DM--VI--------------SSERYEVESISRSIFDFKMRLTI   67 (96)
Q Consensus         8 ~~~~~~~~g~~~~l~c~~~~~~--~~~~~w~~~~~--~~--~~--------------~~~~~~~~~~~~~~~~~~~~l~i   67 (96)
                      +..+.+..|+++.|.|.+.+.+  .+.+.|++...  ..  +.              ...++.......   .....|.|
T Consensus        33 p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~---~~~~sL~I  109 (282)
T 1qok_A           33 SGAELVRSGTSVKLSCTASGFNIKDSYMHWLRQGPEQGLEWIGWIDPENGDTEYAPKFQGKATFTTDTS---SNTAYLQL  109 (282)
T ss_dssp             CCCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGBTTEEEEEETT---TTEEEEEE
T ss_pred             CCCEEEeCCCeEEEEEeccCCCCCCceEEEEEeCCCCCcEEEEEEecCCCccccCchhcCcEEEEEecC---CCeEEEEE
Confidence            3456788999999999998764  57899998531  11  10              012333222100   02367999


Q ss_pred             ccCCCCCCeeEEEEEecCCC
Q psy4613          68 KKITKYDLGSYKCIAKNSLG   87 (96)
Q Consensus        68 ~~~~~~d~g~y~c~~~~~~g   87 (96)
                      .+++..|+|.|.|.+.+..|
T Consensus       110 ~~v~~~DsG~Y~C~~~n~~g  129 (282)
T 1qok_A          110 SSLTSEDTAVYYCNEGTPTG  129 (282)
T ss_dssp             CSCCGGGCEEEEEEEECSSS
T ss_pred             CcCChhhCEEEEEEeccCCC
Confidence            99999999999999998765

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.07  E-value=9.1e-10  Score=57.70  Aligned_cols=76  Identities=16%  Similarity=0.190  Sum_probs=52.5

Q ss_pred             CCeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEE
Q psy4613           1 HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKC   80 (96)
Q Consensus         1 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c   80 (96)
                      +|.+...+.. .+..|+.++|.|.+.+ +...+.|++++..+.......       ........|.|.+++..|.|.|.|
T Consensus         7 kP~i~~~P~~-~v~~G~~VtL~C~~~~-~~~~~~w~k~g~~~~~~~~~~-------~~~~~~~~L~I~~v~~~DsG~Y~C   77 (242)
T 1p6f_A            7 KPFIWAEPHF-MVPKEKQVTICCQGNY-GAVEYQLHFEGSLFAVDRPKP-------PERINKVKFYIPDMNSRMAGQYSC   77 (242)
T ss_dssp             CCEEEEESCS-EEETTCCEEEEEECCT-TCCEEEEEETTEEEEEECCSS-------CTTCCEEEEEECSCCGGGCEEEEE
T ss_pred             CCEEEeeCCC-ccCCCCcEEEEEeeCC-CCcEEEEEECCCccccccccc-------cCCcceeEEEecCCCcccCeEEEE
Confidence            3666655554 6889999999999865 445788999865443110000       001134679999999999999999


Q ss_pred             EEecC
Q psy4613          81 IAKNS   85 (96)
Q Consensus        81 ~~~~~   85 (96)
                      .+.+.
T Consensus        78 ~~~~~   82 (242)
T 1p6f_A           78 IYRVG   82 (242)
T ss_dssp             EEEET
T ss_pred             EEecC
Confidence            98764

>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*

Probab=99.06  E-value=5e-09  Score=54.72  Aligned_cols=73  Identities=14%  Similarity=0.179  Sum_probs=50.1

Q ss_pred             ceeeecCCCcEEEEEEeeecc--cceeEEeec--cceeEe----------------cccceEEEEeccccceEEEEEEEc
Q psy4613           9 QLVGAPIDTDVTLECYVEAYP--KSINYWVRD--QGDMVI----------------SSERYEVESISRSIFDFKMRLTIK   68 (96)
Q Consensus         9 ~~~~~~~g~~~~l~c~~~~~~--~~~~~w~~~--~~~~~~----------------~~~~~~~~~~~~~~~~~~~~l~i~   68 (96)
                      ....+..|+.+.|.|.+.+.+  .+.+.|+++  +..+..                ...++.+.....   .....|.|.
T Consensus       139 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~---~~~~~L~I~  215 (250)
T 3esu_F          139 GPELVKPGASVKISCKDSGYAFSSSWMNWVKQRPGQGPEWIGRIYPGDGDTNYNGKFKGKATLTADKS---SSTAYMQLS  215 (250)
T ss_dssp             CCEEECTTCCEEEEEECCSTTGGGSEEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGG---GTEEEEEEC
T ss_pred             CceEEcCCceEEEEEEecCCcccCCEEEEEEECCCCCcEEEEEEeccCCccccCccccceEEEEecCC---CCeEEEEEC
Confidence            345678999999999998866  678999986  222210                012333322110   123579999


Q ss_pred             cCCCCCCeeEEEEEec
Q psy4613          69 KITKYDLGSYKCIAKN   84 (96)
Q Consensus        69 ~~~~~d~g~y~c~~~~   84 (96)
                      +++..|.|.|.|.+.+
T Consensus       216 ~v~~~DsG~Y~C~~~~  231 (250)
T 3esu_F          216 SLTSVDSAVYFCARSG  231 (250)
T ss_dssp             SCCGGGCEEEEEEEEC
T ss_pred             CCCcccCEEEEEEEec
Confidence            9999999999999996

>4gjt_B Poliovirus receptor-related protein 4; six-bladed -propeller, IGV-like fold, viral entry, MV-H, NEC BETA4/BETA5 groove; HET: NAG; 3.10A {Homo sapiens}

Probab=99.06  E-value=1.1e-09  Score=51.85  Aligned_cols=87  Identities=17%  Similarity=0.357  Sum_probs=52.8

Q ss_pred             cCceeeecCCCcEEEEEEeeeccc---ceeEEeecccee----E-e-c-----------ccceEEEEeccccceEEEEEE
Q psy4613           7 PNQLVGAPIDTDVTLECYVEAYPK---SINYWVRDQGDM----V-I-S-----------SERYEVESISRSIFDFKMRLT   66 (96)
Q Consensus         7 ~~~~~~~~~g~~~~l~c~~~~~~~---~~~~w~~~~~~~----~-~-~-----------~~~~~~~~~~~~~~~~~~~l~   66 (96)
                      .+..+.+..|+++.|.|.+.+.+.   ..+.|++.....    . . .           ..|..+..  ........+|.
T Consensus         6 ~p~~vtv~~G~~v~L~C~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~--~~~~~~~~sL~   83 (123)
T 4gjt_B            6 TSDVVTVVLGQDAKLPCFYRGDSGEQVGQVAWARVDAGEGAQELALLHSKYGLHVSPAYEGRVEQPP--PPRNPLDGSVL   83 (123)
T ss_dssp             CCSEEECCTTSEEEECCEECCCTTCCEEEEEEEECCCSSCCCEEEEECSSSCCCBCGGGTTTEECCC--SSCCTTBCCEE
T ss_pred             cCCEEEEEcCCCEEEEEEEeCCccCceeEEEEEEcCCCCCcceeEEEEecCCcEeCccceeEEEEec--CCCcCCEEEEE
Confidence            345677899999999999876443   357898753211    0 0 0           01111100  00000124699


Q ss_pred             EccCCCCCCeeEEEEEec-CCCceEEEEEe
Q psy4613          67 IKKITKYDLGSYKCIAKN-SLGEVESSIRL   95 (96)
Q Consensus        67 i~~~~~~d~g~y~c~~~~-~~g~~~~~~~l   95 (96)
                      |.+++..|+|.|.|.+.+ +.|.....+.|
T Consensus        84 I~~v~~~DsG~Y~C~v~t~~~g~~~~~~~L  113 (123)
T 4gjt_B           84 LRNAVQADEGEYECRVSTFPAGSFQARLRL  113 (123)
T ss_dssp             EESCCSSSCSEEEEEEEESSSCEEEEEEEE
T ss_pred             ECCCChHHCEEEEEEEEECCCCeEEeEEEE
Confidence            999999999999998765 56666555544

>1u3h_A T-cell receptor alpha-chain; complex, immune system; 2.42A {Mus musculus} SCOP: b.1.1.1 PDB: 1b88_A 1kj2_A* 1kb5_A 1d9k_A*

Probab=98.64  E-value=1.5e-11  Score=57.22  Aligned_cols=78  Identities=18%  Similarity=0.170  Sum_probs=52.3

Q ss_pred             EecCceeeecCCCcEEEEEEeeecccceeEEeeccc--ee--Ee---------cccceEEEEeccccceEEEEEEEccCC
Q psy4613           5 HVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQG--DM--VI---------SSERYEVESISRSIFDFKMRLTIKKIT   71 (96)
Q Consensus         5 ~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~--~~--~~---------~~~~~~~~~~~~~~~~~~~~l~i~~~~   71 (96)
                      ...+..+.+..|++++|.|.+.+.+.+.+.|++...  ..  +.         ...++.....   .......|.|.+++
T Consensus         3 ~Q~p~~v~v~~G~~v~L~C~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~R~~~~~~---~~~~~~~L~I~~v~   79 (110)
T 1u3h_A            3 RQSPQSLTVWEGETAILNCSYENSAFDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFN---KREKKLSLHIADSQ   79 (110)
Confidence            345566778999999999999877778899998632  11  10         0112221110   01123579999999


Q ss_pred             CCCCeeEEEEEecC
Q psy4613          72 KYDLGSYKCIAKNS   85 (96)
Q Consensus        72 ~~d~g~y~c~~~~~   85 (96)
                      .+|+|.|.|.+.+.
T Consensus        80 ~~DsG~Y~C~~~~~   93 (110)
T 1u3h_A           80 PGDSATYFCAASAN   93 (110)
Confidence            99999999998864

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.06  E-value=1.7e-09  Score=60.65  Aligned_cols=71  Identities=14%  Similarity=0.155  Sum_probs=53.3

Q ss_pred             CceeeecCCCcEEEEEEeeecccc---eeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEec
Q psy4613           8 NQLVGAPIDTDVTLECYVEAYPKS---INYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKN   84 (96)
Q Consensus         8 ~~~~~~~~g~~~~l~c~~~~~~~~---~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~   84 (96)
                      +....+..|+.+.|.|.+.+.+.+   .+.|++++..+.... .      ..  ......|.|..++..|.|.|.|.+.|
T Consensus        93 ~~~~~v~~G~~v~L~C~~~g~~~~~~~~v~W~k~g~~l~~~~-~------~~--~~~~~~L~i~~~~~~d~G~Y~C~a~n  163 (450)
T 1z7z_I           93 PLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREP-A------VG--EPAEVTTTVLVRRDHHGANFSCRTEL  163 (450)
T ss_dssp             CCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEE-C------CT--TTEEEEEEEECCSSCSSCEEEEEEEE
T ss_pred             CCCceEeeCCeEEEEEEecCCCCCcCcEEEEeeCCEEeeccc-c------cc--cccceEEEEEeeccccCceEEEEEEc
Confidence            344567889999999999998887   899999876553211 0      00  01346899999999999999999998


Q ss_pred             CCC
Q psy4613          85 SLG   87 (96)
Q Consensus        85 ~~g   87 (96)
                      ..|
T Consensus       164 ~~g  166 (450)
T 1z7z_I          164 DLR  166 (450)
T ss_dssp             ECG
T ss_pred             ccC
Confidence            765

>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1

Probab=99.06  E-value=7.9e-09  Score=54.35  Aligned_cols=80  Identities=16%  Similarity=0.236  Sum_probs=53.6

Q ss_pred             EEecCceeeecCCCcEEEEEEeeecc--cceeEEeecc--ce--eEe-------------cccceEEEEeccccceEEEE
Q psy4613           4 IHVPNQLVGAPIDTDVTLECYVEAYP--KSINYWVRDQ--GD--MVI-------------SSERYEVESISRSIFDFKMR   64 (96)
Q Consensus         4 ~~~~~~~~~~~~g~~~~l~c~~~~~~--~~~~~w~~~~--~~--~~~-------------~~~~~~~~~~~~~~~~~~~~   64 (96)
                      +..++ ...+..|+.+.|.|.+.+.+  .+.+.|++..  ..  .+.             ...++.+.....   .....
T Consensus         4 ~~~p~-~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~---~~~~~   79 (257)
T 1f3r_B            4 LLESG-PGLVRPSETLSLTCTVSGFSLTSFSVSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSISRDTS---KNQVF   79 (257)
T ss_dssp             EEEEC-CSEECTTSEEEEEEEEESSCTTTSCCEEEEEETTSCCEEEEEECSSSCEEECSSSSTTEEEEEETT---TTEEE
T ss_pred             EECCC-CccccCCceEEEEEEEecccCCCccEEEEEeCCCCCcEEEEEEecCCceeeCcccCCcEEEEEECC---CCEEE
Confidence            44443 34689999999999998874  6789999852  11  110             012333322100   12357


Q ss_pred             EEEccCCCCCCeeEEEEEecCCC
Q psy4613          65 LTIKKITKYDLGSYKCIAKNSLG   87 (96)
Q Consensus        65 l~i~~~~~~d~g~y~c~~~~~~g   87 (96)
                      |.|.+++..|+|.|.|.+.+..|
T Consensus        80 L~I~~v~~~DsG~Y~C~a~n~~g  102 (257)
T 1f3r_B           80 LKMNSLQTDDTGTYYCTRDLYGG  102 (257)
T ss_dssp             EEEESCCTTCCEEEEEEEESSSS
T ss_pred             EEECCCCcccCEEEEEEEccccc
Confidence            99999999999999999998753

>3r08_E T-cell surface glycoprotein CD3 epsilon chain; antibody, T-cell receptor, signalling, immune SY; 4.10A {Cricetulus migratorius}

Probab=99.06  E-value=2.4e-11  Score=53.77  Aligned_cols=60  Identities=17%  Similarity=0.315  Sum_probs=45.2

Q ss_pred             CceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccC-CCCCCeeEEEEEec
Q psy4613           8 NQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKI-TKYDLGSYKCIAKN   84 (96)
Q Consensus         8 ~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~-~~~d~g~y~c~~~~   84 (96)
                      +....+..|.+++|.|.+.+.|.  +.|++++..+. . .             ....|.|.++ ...|+|.|.|.+..
T Consensus         6 p~~~v~~~G~~v~L~C~~~g~P~--i~W~kdg~~l~-~-~-------------~~~~L~I~~v~~~~DsG~Y~C~A~t   66 (82)
T 3r08_E            6 IEYKVSISGTSVELTCPLDSDEN--LKWEKNGQELP-Q-K-------------HDKHLVLQDFSEVEDSGYYVCYTPA   66 (82)
T ss_dssp             CCCEEEEETTEEEEECSSCCCSS--CEEEETTEECT-T-C-------------CSSCCBCCSCCTTTTCSCEEEECSS
T ss_pred             CceeEEEcCCeEEEEEECCCCCc--EEEEECCEECc-C-C-------------CCCEEEECccCccCcCEEEEEEEcc
Confidence            34455678999999999999873  99999875542 1 1             0146889996 77999999998854

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A

Probab=99.06  E-value=2.9e-10  Score=57.25  Aligned_cols=61  Identities=18%  Similarity=0.288  Sum_probs=47.5

Q ss_pred             eecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEcc-CCCCCCeeEEEEEecCCCce
Q psy4613          12 GAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKK-ITKYDLGSYKCIAKNSLGEV   89 (96)
Q Consensus        12 ~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~-~~~~d~g~y~c~~~~~~g~~   89 (96)
                      ....|+.+.|.|.+.+ +. .+.|++++..+...               ....|.|.+ ++..|+|.|.|.+.|..|..
T Consensus        10 v~~~G~~v~L~C~~~~-~~-~i~W~k~g~~l~~~---------------~~~~L~I~~~~~~~D~G~Y~C~a~n~~g~~   71 (186)
T 1jbj_A           10 VSISGTSVELTCPLDS-DE-NLKWEKNGQELPQK---------------HDKHLVLQDFSEVEDSGYYVCYTPASNKNT   71 (186)
T ss_dssp             EEEETTEEEEECSSCC-CT-TCEEEETTEEECSC---------------CCSEEEEESCCTTTSCEEEEEECSSCCCCC
T ss_pred             EEeCCcEEEEEEeCCC-CC-ceEEEECCEECCCC---------------CCCEEEECCCCccccCEEEEEEEEeCCCcE
Confidence            3467999999999887 43 49999987554311               013689999 99999999999999987763

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.06  E-value=1.3e-10  Score=62.91  Aligned_cols=79  Identities=16%  Similarity=0.418  Sum_probs=56.6

Q ss_pred             eeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCceE
Q psy4613          11 VGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVE   90 (96)
Q Consensus        11 ~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~~   90 (96)
                      ..+..|..+.|.|.+.+.|.+.+.|++++..+.. ..+.......    .....|.|.++...|.|.|.|.+.+..|...
T Consensus       133 ~~v~~g~~v~l~C~~~g~p~~~v~W~~~~~~~~~-~~~~~~~~~~----~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~  207 (334)
T 1ry7_B          133 LAVPAANTVRFRCPAAGNPTPSISWLKNGREFRG-EHRIGGIKLR----HQQWSLVMESVVPSDRGNYTCVVENKFGSIR  207 (334)
T ss_dssp             EEEETTCCEEEECCCCCSSCCEEECCBTTBCCCT-TSSTTCCCCC----TTTTEEEECSCCGGGCCCEEEEEEETTEEEE
T ss_pred             EEecCCCcEEEEEEccCCCCCeEEEEECCEECcc-cccccceecc----cceEEEEECCCCcccCEEEEEEEEeCCCCEE
Confidence            4577899999999999999999999998655432 1111000000    0124689999999999999999999888765


Q ss_pred             EEEE
Q psy4613          91 SSIR   94 (96)
Q Consensus        91 ~~~~   94 (96)
                      ..+.
T Consensus       208 ~~~~  211 (334)
T 1ry7_B          208 QTYT  211 (334)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            5544

>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}

Probab=99.06  E-value=3.6e-09  Score=60.46  Aligned_cols=78  Identities=14%  Similarity=0.247  Sum_probs=52.9

Q ss_pred             eecCCCcEEEEEEeeec-ccc-eeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCce
Q psy4613          12 GAPIDTDVTLECYVEAY-PKS-INYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEV   89 (96)
Q Consensus        12 ~~~~g~~~~l~c~~~~~-~~~-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~   89 (96)
                      .+..|+.+.|.|.+.+. |.| .+.|++++..+...... ... .....+...+.|.|..+...| |.|.|.+.|..|..
T Consensus       230 ~~~~G~~~~l~C~~~g~~P~p~~v~W~k~g~~~~~~~~~-~~~-~~~g~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~g~~  306 (523)
T 2rcj_C          230 KSTSGGTAALGCLVKDYFPQPVTVSWNSGALTSGVHTFP-AVL-QSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNT  306 (523)
T ss_pred             ccccCCceEEEEEEeceeCCCeEEEEecCCcccceEeCC-cEe-cCCCcEEEEEEEEechhhcCC-ceEEEEEEeCCCCc
Confidence            45689999999999886 777 79999986543211000 000 011112234689999999999 99999999998875


Q ss_pred             EEE
Q psy4613          90 ESS   92 (96)
Q Consensus        90 ~~~   92 (96)
                      ...
T Consensus       307 ~~~  309 (523)
T 2rcj_C          307 KVD  309 (523)
T ss_pred             ceE
Confidence            443

>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A*

Probab=99.06  E-value=7.6e-09  Score=53.97  Aligned_cols=76  Identities=11%  Similarity=0.174  Sum_probs=45.1

Q ss_pred             ecCCCcEEEEEEeee-cccc-eeEEeeccceeEe-----cccc-eEEEEeccccceEEEEEEEccCCCCCCeeEEEEEec
Q psy4613          13 APIDTDVTLECYVEA-YPKS-INYWVRDQGDMVI-----SSER-YEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKN   84 (96)
Q Consensus        13 ~~~g~~~~l~c~~~~-~~~~-~~~w~~~~~~~~~-----~~~~-~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~   84 (96)
                      ...|..+.|.|.+.+ .|.+ .+.|++++..+..     .... ..........+.....|.+......|.|.|.|.+.|
T Consensus       130 ~~~~~~~~L~C~~~g~~P~pi~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~n  209 (248)
T 3pv7_A          130 GMKENEDKYMCESSGFYPEAINITWEKQTQKFPHPIEISEDVITGPTIKNMDGTFNVTSCLKLNSSQEDPGTVYQCVVRH  209 (248)
T ss_dssp             ------CEEEEEEEEEBSSCCEEEEEEECSSSCSCEEECTTEEEEEEEECTTSCEEEEEEEECC--CCCTTCEEEEEEEC
T ss_pred             cccCCCcEEEEEEccEECCCeEEEEEECCccCCCccccccceeecccEECCCCCEEEEEEEEEcCccccCCCEEEEEEEC
Confidence            345777889999998 7888 9999998643210     0000 111111222333456788888888899999999999


Q ss_pred             CCCc
Q psy4613          85 SLGE   88 (96)
Q Consensus        85 ~~g~   88 (96)
                      ..+.
T Consensus       210 ~~~~  213 (248)
T 3pv7_A          210 ASLH  213 (248)
T ss_dssp             TTCS
T ss_pred             CCCC
Confidence            8775

>1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A

Probab=99.05  E-value=7.4e-09  Score=54.03  Aligned_cols=72  Identities=19%  Similarity=0.317  Sum_probs=49.1

Q ss_pred             eeecCCCcEEEEEEeeecc--cceeEEeecc--cee--Ee--------------cccceEEEEeccccceEEEEEEEccC
Q psy4613          11 VGAPIDTDVTLECYVEAYP--KSINYWVRDQ--GDM--VI--------------SSERYEVESISRSIFDFKMRLTIKKI   70 (96)
Q Consensus        11 ~~~~~g~~~~l~c~~~~~~--~~~~~w~~~~--~~~--~~--------------~~~~~~~~~~~~~~~~~~~~l~i~~~   70 (96)
                      ..+..|+.+.|.|.+.+.+  .+.+.|+++.  ...  +.              ...++.+....   ......|.|.++
T Consensus       137 ~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~---~~~~~~L~I~~v  213 (247)
T 1svz_A          137 ELKKPGETVKISCKATNYAFTDYSMHWVKQAPGGDLKYVGWINTETDEPTFADDFKGRFAFSLDT---STSTAFLQINNL  213 (247)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECTTTCCEEECGGGSSSEEEEEEG---GGTEEEEEECSC
T ss_pred             eeecCCCcEEEEEEEcCcccCCcEEEEEEeCCCCCcEEEEEEEcCCCccccCccccCcEEEEEec---CCCEEEEEECCC
Confidence            3488999999999998864  5689999853  111  10              01233322110   012368999999


Q ss_pred             CCCCCeeEEEEEecC
Q psy4613          71 TKYDLGSYKCIAKNS   85 (96)
Q Consensus        71 ~~~d~g~y~c~~~~~   85 (96)
                      +..|+|.|.|.+.+.
T Consensus       214 ~~~DsG~Y~C~a~n~  228 (247)
T 1svz_A          214 KNEDTATYFCVRDRH  228 (247)
T ss_dssp             CGGGCEEEEEEEEEG
T ss_pred             ChhHCEEEEEEEecc
Confidence            999999999999884

>2qsq_A Carcinoembryonic antigen-related cell adhesion MO; glycoprotein, GPI-anchor, immunoglobulin DOMA lipoprotein, membrane; 1.95A {Homo sapiens} PDB: 2qst_A 2ver_N* 2gk2_A

Probab=99.05  E-value=7.1e-10  Score=51.78  Aligned_cols=76  Identities=18%  Similarity=0.051  Sum_probs=49.9

Q ss_pred             eeecCCCcEEEEEEeeecccceeEEeecccee----Ee---c-----------ccceEEEEeccccceEEEEEEEccCCC
Q psy4613          11 VGAPIDTDVTLECYVEAYPKSINYWVRDQGDM----VI---S-----------SERYEVESISRSIFDFKMRLTIKKITK   72 (96)
Q Consensus        11 ~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~----~~---~-----------~~~~~~~~~~~~~~~~~~~l~i~~~~~   72 (96)
                      ..+..|+++.|.|.........+.|++.....    +.   .           ..|..+.        .+.+|.|.+++.
T Consensus        10 ~~~~~G~~v~L~~~~~p~~~~~i~W~kg~~~~~~~~I~~y~~~~~~~~~~~~~~gR~~~~--------~ngSL~I~nvt~   81 (111)
T 2qsq_A           10 FNVAEGKEVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREIIY--------PNASLLIQNIIQ   81 (111)
T ss_dssp             SEEETTSCEEEEEESCCSSEEEEEEEESSSCCGGGEEEEEETTTTEEEECTTCCSCEEEC--------TTSCEEECSCCG
T ss_pred             ceeccCCCEEEEEeCCCCCceEEEEEeCCCCCCCcEEEEEECCCcceecCcccCCcEEEe--------cCCcEEEccCcc
Confidence            45789999999998544444578999864211    10   0           1122111        235799999999


Q ss_pred             CCCeeEEEEEecCCCc-eEEEEE
Q psy4613          73 YDLGSYKCIAKNSLGE-VESSIR   94 (96)
Q Consensus        73 ~d~g~y~c~~~~~~g~-~~~~~~   94 (96)
                      .|.|.|.|.+.+..+. ......
T Consensus        82 ~D~G~Ytc~v~~~~~~~~~~~~~  104 (111)
T 2qsq_A           82 NDAGFYTLHVIKSDLVNEEATGQ  104 (111)
T ss_dssp             GGCEEEEEEEEETTSCCEEEEEE
T ss_pred             cCCeEEEEEEEeCCCcEEEEEEE
Confidence            9999999999987653 343333

>2hp4_A T-cell surface glycoprotein CD8 alpha chain; CO-receptor, soluble protein, KD, protein engineering, immunotherapy, immune-suppressor, immune system; 2.10A {Homo sapiens} PDB: 1akj_D 1cd8_A 3qzw_G 2q3a_A

Probab=99.05  E-value=8.8e-09  Score=48.16  Aligned_cols=77  Identities=18%  Similarity=0.255  Sum_probs=51.5

Q ss_pred             EEecCceeeecCCCcEEEEEEeeecc-cceeEEeec--cc----eeE-ec------------ccceEEEEeccccceEEE
Q psy4613           4 IHVPNQLVGAPIDTDVTLECYVEAYP-KSINYWVRD--QG----DMV-IS------------SERYEVESISRSIFDFKM   63 (96)
Q Consensus         4 ~~~~~~~~~~~~g~~~~l~c~~~~~~-~~~~~w~~~--~~----~~~-~~------------~~~~~~~~~~~~~~~~~~   63 (96)
                      +...+..+.+..|++++|.|.+.... ...+.|++.  +.    ..+ ..            ..++.....     ....
T Consensus         3 ~~q~p~~v~v~~G~~vtL~C~~~~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~rf~~~~~-----~~~~   77 (114)
T 2hp4_A            3 FRVSPLDRTWNLGETVELKCQVLLSNPTSGASWLFQPRGAAASPTFLLYLNQNKPKAAEGLDTQRFSGKRL-----GDTF   77 (114)
T ss_dssp             EEEECCSCCCCTTCCEEEEEEECCSSCCSCEEEEEEESSSSCCCEEEEEESSSSCEECTTCCTTTEEEEEE-----TTEE
T ss_pred             cEeCCCEEEEcCCCCEEEEEEeecCCCCceEEEEEECCCCCCCcEEEEEEcCCCccccCCCCcccEEEEec-----CCEE
Confidence            44556667889999999999987543 568999874  22    111 10            122222110     0235


Q ss_pred             EEEEccCCCCCCeeEEEEEecC
Q psy4613          64 RLTIKKITKYDLGSYKCIAKNS   85 (96)
Q Consensus        64 ~l~i~~~~~~d~g~y~c~~~~~   85 (96)
                      .|.|.+++.+|+|.|.|.+.+.
T Consensus        78 ~L~I~~~~~~Dsg~Y~C~~~~~   99 (114)
T 2hp4_A           78 VLTLSDFRRENEGYYFCSALSN   99 (114)
T ss_dssp             EEEESSCCGGGCEEEEEEEEET
T ss_pred             EEEECCCCHHHCEEEEEEEecC
Confidence            7999999999999999998864

>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2 b.1.1.2 PDB: 1i1a_D*

Probab=99.05  E-value=4.9e-10  Score=58.58  Aligned_cols=75  Identities=15%  Similarity=0.106  Sum_probs=51.5

Q ss_pred             ecCCCcEEEEEEeeec---ccc-eeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCc
Q psy4613          13 APIDTDVTLECYVEAY---PKS-INYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGE   88 (96)
Q Consensus        13 ~~~g~~~~l~c~~~~~---~~~-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~   88 (96)
                      +..|+.+.|.|.+.+.   |.+ .+.|++++..+... ............+.....|.|..++..|.|.|.|.+.+..+.
T Consensus        29 v~~G~~v~L~C~~~g~~~~P~~~~v~W~k~~~~~~~~-~~~~~~~~~~~~~~~~s~L~I~~~~~~D~g~Y~C~~~~~~~~  107 (239)
T 1i1c_A           29 LGGGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTA-QTHAPEKQSNSTLRSVSELPIVERDWLNGKTFKCKVNSGAFP  107 (239)
T ss_dssp             TTSSSCCEEEEEEEEECTTCCCCEEEEEESSCEECCC-EECCCEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECSSSS
T ss_pred             cccCCcEEEEEEEecCccCCCCCEEEEEECCccccCc-ccccceEcCCCcEEEEEEEEEEhhHccCCCeEEEEEecccCC
Confidence            6789999999999886   666 89999987543211 000000111112224567999999999999999999998774

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A

Probab=99.05  E-value=8.6e-10  Score=56.28  Aligned_cols=71  Identities=14%  Similarity=0.162  Sum_probs=48.9

Q ss_pred             ecCCCcEEEEEEeeec----ccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCc
Q psy4613          13 APIDTDVTLECYVEAY----PKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGE   88 (96)
Q Consensus        13 ~~~g~~~~l~c~~~~~----~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~   88 (96)
                      +..|..+.|.|.+.+.    |.|.+.|++++.....  ...          ...+.|.|..+...|.|.|.|.+.|..+.
T Consensus       135 ~~~G~~v~L~C~~~~~~~~~p~p~v~W~~~~~~~~~--~~~----------~~~~~L~i~~~~~~~~g~Y~C~a~n~~~~  202 (214)
T 2zg1_A          135 LESGRPTRLSCSLPGSCEAGPPLTFSWTGNALSPLD--PET----------TRSSELTLTPRPEDHGTNLTCQMKRQGAQ  202 (214)
T ss_dssp             CCTTCCEEEEEECTTCCSCSSCCEEEEESSTTSSSC--SSC----------CCSSEEEECCCTTCCSCEEEEEEECC---
T ss_pred             ccCCCeEEEEEEeccCCCCCCCceEEEeCCCCccCC--CCc----------eeEEEEEEecccHHcCcEEEEEEEeCCCC
Confidence            4579999999998763    7889999988644221  111          02356888999888999999999997543


Q ss_pred             --eEEEEEe
Q psy4613          89 --VESSIRL   95 (96)
Q Consensus        89 --~~~~~~l   95 (96)
                        ....+.|
T Consensus       203 ~~~~~~v~l  211 (214)
T 2zg1_A          203 VTTERTVQL  211 (214)
T ss_dssp             -CCEEEEEC
T ss_pred             cceEEEEEE
Confidence              3444443

>1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H

Probab=99.05  E-value=1.5e-08  Score=51.94  Aligned_cols=76  Identities=14%  Similarity=0.250  Sum_probs=52.0

Q ss_pred             CceeeecCCCcEEEEEEeeecc--cceeEEeecc--ceeEe----------------cccceEEEEeccccceEEEEEEE
Q psy4613           8 NQLVGAPIDTDVTLECYVEAYP--KSINYWVRDQ--GDMVI----------------SSERYEVESISRSIFDFKMRLTI   67 (96)
Q Consensus         8 ~~~~~~~~g~~~~l~c~~~~~~--~~~~~w~~~~--~~~~~----------------~~~~~~~~~~~~~~~~~~~~l~i   67 (96)
                      +..+.+..|+.+.|.|.+.+.+  .+.+.|+++.  ..+..                ...++.+.....   .....|.|
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~---~~~~~L~I   83 (219)
T 1c1e_H            7 SGPELKKPGETVKISCKASGYMFTNYGMNWVKQAPGKALKLMGWINPYTGESTFADDFKGRFAFFLETS---ATTAYLQI   83 (219)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECSSSCCEEECGGGCSSEEEEEEGG---GTEEEEEE
T ss_pred             CCCeEecCCCcEEEEEEEeCcccccceEEEEEeCCCCCcEEEEEEecCCCceEeCcccCCcEEEEEecC---CCEEEEEE
Confidence            3456789999999999998764  6789999863  22110                012333221110   01367999


Q ss_pred             ccCCCCCCeeEEEEEecCC
Q psy4613          68 KKITKYDLGSYKCIAKNSL   86 (96)
Q Consensus        68 ~~~~~~d~g~y~c~~~~~~   86 (96)
                      .+++..|.|.|.|.+.+..
T Consensus        84 ~~v~~~D~G~Y~C~~~~~~  102 (219)
T 1c1e_H           84 NNLKNEDMATYFCARGTTI  102 (219)
T ss_dssp             CSCCGGGCEEEEEEEEETT
T ss_pred             CCCCcccCEEEEEEEeccC
Confidence            9999999999999999875

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J

Probab=99.05  E-value=4.6e-09  Score=60.64  Aligned_cols=91  Identities=14%  Similarity=0.228  Sum_probs=59.8

Q ss_pred             CeEEecCceeeecCCCcEEEEEEeeecc-cceeEEeeccceeE---ec---------ccceEEEEeccccceEEEEEEEc
Q psy4613           2 PVIHVPNQLVGAPIDTDVTLECYVEAYP-KSINYWVRDQGDMV---IS---------SERYEVESISRSIFDFKMRLTIK   68 (96)
Q Consensus         2 p~~~~~~~~~~~~~g~~~~l~c~~~~~~-~~~~~w~~~~~~~~---~~---------~~~~~~~~~~~~~~~~~~~l~i~   68 (96)
                      |.+...+....+..|+.+.|.|.+.+.+ .+.+.|++++....   ..         ..+..+....  .......|.|.
T Consensus       113 p~~~~~~~~~~v~~G~~v~l~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~--~~~~~~~L~I~  190 (585)
T 2ocw_A          113 PGLLNDTKVYTVDLGRTVTINCPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQG--TGQLLFSVVIN  190 (585)
T ss_pred             ccccCCCccEEEEcCCCEEEEEEecCCCCCccEEEEECCCCCceEEecCCcccCccccCcEEEEecc--CCCcEEEEEEc
Confidence            3444455667788999999999998654 56799999864321   11         1222222111  00012379999


Q ss_pred             cCCCCCCeeEEEEEecCCCceEEEEE
Q psy4613          69 KITKYDLGSYKCIAKNSLGEVESSIR   94 (96)
Q Consensus        69 ~~~~~d~g~y~c~~~~~~g~~~~~~~   94 (96)
                      +++..|.|.|.|.+.+..|.....+.
T Consensus       191 ~v~~~D~G~Y~C~a~n~~g~~~~~~~  216 (585)
T 2ocw_A          191 QLRLSDAGQYLCQAGDDSNSNKKNAD  216 (585)
T ss_pred             cCChhHCeEEEEEeccCCccccceEE
Confidence            99999999999999998886554443

>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A*

Probab=99.05  E-value=1e-09  Score=57.26  Aligned_cols=89  Identities=12%  Similarity=0.149  Sum_probs=55.6

Q ss_pred             ecCceeeecCCCcEEEEEEeeecccce-----eEEeeccceeE-----e--cccceEEEEec-----cccceEEEEEEEc
Q psy4613           6 VPNQLVGAPIDTDVTLECYVEAYPKSI-----NYWVRDQGDMV-----I--SSERYEVESIS-----RSIFDFKMRLTIK   68 (96)
Q Consensus         6 ~~~~~~~~~~g~~~~l~c~~~~~~~~~-----~~w~~~~~~~~-----~--~~~~~~~~~~~-----~~~~~~~~~l~i~   68 (96)
                      .++..+.+..|+.+.|.|.+.+.+.+.     +.|++.+....     .  ...........     .........|.|.
T Consensus         8 ~~p~~~~v~~G~~v~L~C~~~g~p~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~   87 (248)
T 3pv7_A            8 MAGGTQITPLNDNVTIFCNIFYSQPLNITSMGITWFWKSLTFDKEVKVFEFFGDHQEAFRPGAIVSPWRLKSGDASLRLP   87 (248)
T ss_dssp             STTSEEEEETTSCEEECCEEEESSCCCTTSCEEEEEEECSSCCCEEEEEEEESSCEEESSTTCBCCHHHHTTTBCCEEES
T ss_pred             eCCCCeEEeCCCCEEEeeEEecCCCcCCCceEEEEEEEcCCCCcceEEEEecCCcccccCCceEEEeccCCCCcEEEEeC
Confidence            345667788999999999998877665     99988632211     0  00000000000     0000012459999


Q ss_pred             cCCCCCCeeEEEEEecCCCceEEEEE
Q psy4613          69 KITKYDLGSYKCIAKNSLGEVESSIR   94 (96)
Q Consensus        69 ~~~~~d~g~y~c~~~~~~g~~~~~~~   94 (96)
                      +++..|.|.|.|.+.+..+.....+.
T Consensus        88 ~v~~~D~G~Y~C~~~~~~~~~~~~~~  113 (248)
T 3pv7_A           88 GIQLEEAGEYRCEVVVTPLKAQGTVQ  113 (248)
T ss_dssp             SCCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred             CCCHHHCeEEEEEEEeCCccceeEEE
Confidence            99999999999999987765544443

>3r0n_A Poliovirus receptor-related protein 2; IG-domain, cell-adhesion molecule, virus entry receptor, STR genomics, PSI-biology; 1.30A {Homo sapiens} PDB: 4dfh_A 4dfi_A

Probab=99.05  E-value=1.7e-09  Score=51.37  Aligned_cols=89  Identities=24%  Similarity=0.277  Sum_probs=54.0

Q ss_pred             cCceeeecCCCcEEEEEEeeecccc----eeEEeeccc----e-eE-e---------c----ccceEEEEecccc-----
Q psy4613           7 PNQLVGAPIDTDVTLECYVEAYPKS----INYWVRDQG----D-MV-I---------S----SERYEVESISRSI-----   58 (96)
Q Consensus         7 ~~~~~~~~~g~~~~l~c~~~~~~~~----~~~w~~~~~----~-~~-~---------~----~~~~~~~~~~~~~-----   58 (96)
                      .+..+.+..|+++.|.|.+...+.+    .+.|++...    . .. .         .    ..+..+.......     
T Consensus         8 ~p~~v~~~~G~~v~L~C~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~g~~~~   87 (128)
T 3r0n_A            8 VLPEVRGQLGGTVELPCHLLPPVPGLYISLVTWQRPDAPANHQNVAAFHPKMGPSFPSPKPGSERLSFVSAKQSTGQDTE   87 (128)
T ss_dssp             CCSEEECCTTSCEEECCEEESCCTTCEEEEEEEECTTSCGGGCEEEEEETTTEEECCSSSSCGGGEEESSCBCCCSTTCC
T ss_pred             cCCeEEEEcCCCEEEEEEeecCCCCCcEEEEEEEEeCCCCCCeeEEEEecccCcccccccccCCcEEEeccccccccccc
Confidence            3455778899999999998876544    788998521    0 00 0         0    0111111000000     


Q ss_pred             -ceEEEEEEEccCCCCCCeeEEEEEec-CCCceEEEEEe
Q psy4613          59 -FDFKMRLTIKKITKYDLGSYKCIAKN-SLGEVESSIRL   95 (96)
Q Consensus        59 -~~~~~~l~i~~~~~~d~g~y~c~~~~-~~g~~~~~~~l   95 (96)
                       ......|.|.+++..|+|.|.|.+.. ..|.....+.|
T Consensus        88 ~~~~~~sL~I~~v~~~D~G~Y~C~v~~~~~g~~~~~~~L  126 (128)
T 3r0n_A           88 AELQDATLALHGLTVEDEGNYTCEFATFPKGSVRGMTWL  126 (128)
T ss_dssp             CBCSBCCEEECSCCGGGCEEEEEEEEEETTEEEEEEEEE
T ss_pred             cCCCCeEEEEccCCchhCeEEEEEEEeCCCCCcccEEEE
Confidence             00124799999999999999998664 55666665554

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*

Probab=99.04  E-value=1.7e-09  Score=58.85  Aligned_cols=80  Identities=15%  Similarity=0.145  Sum_probs=56.2

Q ss_pred             CceeeecCCCcEEEEEEeeeccc-----------ceeEEeeccceeE----ec--ccceEEEEeccccceEEEEEEEccC
Q psy4613           8 NQLVGAPIDTDVTLECYVEAYPK-----------SINYWVRDQGDMV----IS--SERYEVESISRSIFDFKMRLTIKKI   70 (96)
Q Consensus         8 ~~~~~~~~g~~~~l~c~~~~~~~-----------~~~~w~~~~~~~~----~~--~~~~~~~~~~~~~~~~~~~l~i~~~   70 (96)
                      ...+.+..|+.+.|.|.+.+.|.           +.+.|++++....    ..  ........       ....|.|.++
T Consensus        14 ~~~v~v~~G~~v~L~C~~~~~p~~~~ys~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~-------~~~~L~i~~~   86 (349)
T 4dep_C           14 MRQIQVFEDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISK-------EKDVLWFRPT   86 (349)
T ss_dssp             CCCCEEETTSCEEEECTCCCCCSSSCHHHHHHTTCEEEEEEEESSCCCEEECCCCCGGGCEEE-------ETTEEEESSC
T ss_pred             eeeEEEecCCeEEEEccccccccccccccccCCCceEEEEECCCCCcccccccccccCceEee-------cCCEEEEccC
Confidence            45567899999999999987554           8999999863211    00  01111111       2257999999


Q ss_pred             CCCCCeeEEEEEecCCCceEEEEE
Q psy4613          71 TKYDLGSYKCIAKNSLGEVESSIR   94 (96)
Q Consensus        71 ~~~d~g~y~c~~~~~~g~~~~~~~   94 (96)
                      +..|.|.|.|.+.+..+.....+.
T Consensus        87 ~~~D~G~Y~C~a~n~~~~~~~~~~  110 (349)
T 4dep_C           87 LLNDTGNYTCMLRNTTYCSKVAFP  110 (349)
T ss_dssp             CGGGCEEEEEEEECSSCEEEEEEE
T ss_pred             ChhhCEEEEEEEecCCceEEEEEE
Confidence            999999999999998876655443

>2atp_B T-cell surface glycoprotein CD8 beta chain; CD8AB, CD8AA, MHC, immune system; HET: NAG; 2.40A {Mus musculus} SCOP: b.1.1.1 PDB: 3b9k_B*

Probab=99.04  E-value=7.4e-09  Score=48.37  Aligned_cols=77  Identities=19%  Similarity=0.301  Sum_probs=50.9

Q ss_pred             ecCceeeecCCCcEEEEEEeeec-ccceeEEeeccce-------eEe--c------------ccceEEEEeccccceEEE
Q psy4613           6 VPNQLVGAPIDTDVTLECYVEAY-PKSINYWVRDQGD-------MVI--S------------SERYEVESISRSIFDFKM   63 (96)
Q Consensus         6 ~~~~~~~~~~g~~~~l~c~~~~~-~~~~~~w~~~~~~-------~~~--~------------~~~~~~~~~~~~~~~~~~   63 (96)
                      ..+..+.+..|++++|.|.+.+. ....+.|++....       .+.  .            ..++.......   ....
T Consensus         3 Q~p~~~~~~~G~~vtL~C~~~~~~~~~~v~W~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~---~~~~   79 (115)
T 2atp_B            3 QTPSSLLVQTNHTAKMSCEVKSISKLTSIYWLRERQDPKDKYFEFLASWSSSKGVLYGESVDKKRNIILESSD---SRRP   79 (115)
T ss_dssp             EECSEEEECTTSCEEEEEECCSSCCSSEEEEEEEEECSSCEEEEEEEEEETTTEEEECGGGTTTCCEEEESTT---SSSC
T ss_pred             cCCCCEEEcCCCcEEEEEEecCCCCcccEEEEEeCCCCCCCccEEEEEEeCCCCeEecCCCccCcEEEEEeCC---CCEE
Confidence            44566779999999999998764 4568999875421       110  0            12222221100   0124


Q ss_pred             EEEEccCCCCCCeeEEEEEecC
Q psy4613          64 RLTIKKITKYDLGSYKCIAKNS   85 (96)
Q Consensus        64 ~l~i~~~~~~d~g~y~c~~~~~   85 (96)
                      .|.|.+++.+|+|.|.|.+...
T Consensus        80 ~L~I~~~~~~DsG~Y~C~~~~~  101 (115)
T 2atp_B           80 FLSIMNVKPEDSDFYFCATVGS  101 (115)
T ss_dssp             EEEECSCCGGGCEEEEEEEECS
T ss_pred             EEEECCCCHHHCEEEEEeEccC
Confidence            7999999999999999998753

>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L

Probab=99.04  E-value=9.2e-09  Score=54.64  Aligned_cols=74  Identities=15%  Similarity=0.195  Sum_probs=51.0

Q ss_pred             ceeeecCCCcEEEEEEeeecc--cceeEEeecc--cee--Ee--------------cccceEEEEeccccceEEEEEEEc
Q psy4613           9 QLVGAPIDTDVTLECYVEAYP--KSINYWVRDQ--GDM--VI--------------SSERYEVESISRSIFDFKMRLTIK   68 (96)
Q Consensus         9 ~~~~~~~g~~~~l~c~~~~~~--~~~~~w~~~~--~~~--~~--------------~~~~~~~~~~~~~~~~~~~~l~i~   68 (96)
                      ....+..|+.+.|.|.+.+.+  .+.+.|+++.  ...  +.              ...++.......   .....|.|.
T Consensus       142 ~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~---~~~~~L~I~  218 (276)
T 3auv_A          142 GGGLVQPGGSLRLSCAASGFTISDYWIHWVRQAPGKCLEWVAGITPAGGYTYYADSVKGRFTISADTS---KNTAYLQMN  218 (276)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTCCEEEEEEECGGGCCEEECTTTTTTEEEEEEGG---GTEEEEEEC
T ss_pred             CceEecCCCeEEEEEEecCccCCCCEEEEEEcCCCCCcEEEEEEeccCCccccccccCCcEEEEecCC---CcEEEEEEC
Confidence            345678899999999998765  5789999863  111  10              012333322110   123579999


Q ss_pred             cCCCCCCeeEEEEEecC
Q psy4613          69 KITKYDLGSYKCIAKNS   85 (96)
Q Consensus        69 ~~~~~d~g~y~c~~~~~   85 (96)
                      +++..|.|.|.|.+.|.
T Consensus       219 ~v~~~DsG~Y~C~a~n~  235 (276)
T 3auv_A          219 SLRAEDTAVYYCARFVF  235 (276)
T ss_dssp             SCCGGGCEEEEEEEECS
T ss_pred             CCChhHCEEEEEEEEcC
Confidence            99999999999999997

>1u9k_A Triggering receptor expressed on myeloid cells 1; activating receptors, TREM-1, innate immunity, immune system receptor, immune system; 1.76A {Mus musculus} SCOP: b.1.1.1

Probab=99.04  E-value=1e-08  Score=47.88  Aligned_cols=79  Identities=11%  Similarity=0.270  Sum_probs=51.9

Q ss_pred             ecCceeeecCCCcEEEEEEeeecc--cceeEEeeccc----eeE-ec-----------ccceEEEEeccccceEEEEEEE
Q psy4613           6 VPNQLVGAPIDTDVTLECYVEAYP--KSINYWVRDQG----DMV-IS-----------SERYEVESISRSIFDFKMRLTI   67 (96)
Q Consensus         6 ~~~~~~~~~~g~~~~l~c~~~~~~--~~~~~w~~~~~----~~~-~~-----------~~~~~~~~~~~~~~~~~~~l~i   67 (96)
                      ..+..+.+..|++++|.|.+.+..  ...+.|++...    ..+ ..           ..++.+....   ......|.|
T Consensus         4 q~p~~v~~~~G~~vtL~C~~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~---~~~~~~L~I   80 (114)
T 1u9k_A            4 LEEERYDLVEGQTLTVKCPFNIMKYANSQKAWQRLPDGKEPLTLVVTQRPFTRPSEVHMGKFTLKHDP---SEAMLQVQM   80 (114)
T ss_dssp             -CCEEEEECTTCCEEEEEECCHHHHTTSEEEEEECCTTSCCEEEEECCSSTTSCEEEEETTEEEEEEG---GGTEEEEEE
T ss_pred             cCCccEEEeCCCcEEEEeEecCcccCCceEEEEEeCCCCCCEEEEEEcCCCCccccccCCcEEEEecC---cCCEEEEEE
Confidence            456677899999999999987533  35789998531    111 11           0222222111   112457999


Q ss_pred             ccCCCCCCeeEEEEEecCCC
Q psy4613          68 KKITKYDLGSYKCIAKNSLG   87 (96)
Q Consensus        68 ~~~~~~d~g~y~c~~~~~~g   87 (96)
                      .+++.+|+|.|.|.+.+..+
T Consensus        81 ~~~~~~Dsg~Y~C~~~~~~~  100 (114)
T 1u9k_A           81 TDLQVTDSGLYRCVIYHPPN  100 (114)
T ss_dssp             CSCCGGGCEEEEEEEECTTS
T ss_pred             CCCChHHCEEEEEEEecCCC
Confidence            99999999999999988654

>3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B*

Probab=99.04  E-value=5.1e-10  Score=57.13  Aligned_cols=75  Identities=15%  Similarity=0.199  Sum_probs=47.8

Q ss_pred             ecCCCcEEEEEEeeeccc--ceeEEeeccceeEecc-cceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCC
Q psy4613          13 APIDTDVTLECYVEAYPK--SINYWVRDQGDMVISS-ERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLG   87 (96)
Q Consensus        13 ~~~g~~~~l~c~~~~~~~--~~~~w~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g   87 (96)
                      ...|..+.|.|.+.+.++  +.+.|++++..+.... ............+...+.|.+......|.|.|.|.+.|...
T Consensus       124 ~~~~~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~g~YtC~v~n~~~  201 (213)
T 3r06_A          124 QLGTGSATLVCFVNNFYPKDINVKWKVDGSEKRDGVLQSVTDQDSKDSTYSLSSTLSLTKADYERHNLYTCEVTHKTS  201 (213)
T ss_dssp             HHTTTEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEEETTC
T ss_pred             ecCCCCcEEEEEEeeecCCceEEEEEECCcccCCceEeccCceeCCCCcEEEEEEEEeCHHHhccCCeEEEEEEeccc
Confidence            446778999999988654  3899999865543110 00000011112222456788888888889999999998753

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*

Probab=99.04  E-value=9.6e-10  Score=57.84  Aligned_cols=83  Identities=17%  Similarity=0.243  Sum_probs=52.5

Q ss_pred             eEEecCceeeecCCCcEEEEEEee---ecccceeEEeeccceeEec-----------------ccceEEEEeccccceEE
Q psy4613           3 VIHVPNQLVGAPIDTDVTLECYVE---AYPKSINYWVRDQGDMVIS-----------------SERYEVESISRSIFDFK   62 (96)
Q Consensus         3 ~~~~~~~~~~~~~g~~~~l~c~~~---~~~~~~~~w~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~   62 (96)
                      .+..++..+.+..|+.+.|.|.+.   +.+.+.+.|++.+......                 ..+..+..   ......
T Consensus         7 ~v~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~---~~~~~~   83 (268)
T 3mj6_A            7 GLTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRSHLVG---DTFHND   83 (268)
T ss_dssp             -----CCEEEEETTCCEEECCBCCCSSCCCEEEEEEEEESSSTTCCEEEEEEETTEEEECGGGTTTEEECS---CTTTTB
T ss_pred             ccccCCCceEEecCCcEEEEEEeecCCCCceEEEEEEEeCCCCCceEEEEEEcCCCcccCccccCceEEee---cCCCCE
Confidence            455566778899999999999987   6677789999864321100                 01111100   000012


Q ss_pred             EEEEEccCCCCCCeeEEEEEecCCCc
Q psy4613          63 MRLTIKKITKYDLGSYKCIAKNSLGE   88 (96)
Q Consensus        63 ~~l~i~~~~~~d~g~y~c~~~~~~g~   88 (96)
                      ..|.|.+++..|.|.|.|.+.+..+.
T Consensus        84 ~~L~I~~v~~~D~G~Y~C~~~~~~~~  109 (268)
T 3mj6_A           84 GSLLLQDVQKADEGIYTCEIRLKNES  109 (268)
T ss_dssp             CCEEECSCCGGGCEEEEEEEEETTCC
T ss_pred             EEEEECCCCHhHCEEEEEEEEecCCc
Confidence            56999999999999999999886543

>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A

Probab=99.04  E-value=1.5e-08  Score=53.23  Aligned_cols=75  Identities=17%  Similarity=0.248  Sum_probs=50.4

Q ss_pred             CceeeecCCCcEEEEEEeeec--ccceeEEeeccc----eeEe-------------cccceEEEEeccccceEEEEEEEc
Q psy4613           8 NQLVGAPIDTDVTLECYVEAY--PKSINYWVRDQG----DMVI-------------SSERYEVESISRSIFDFKMRLTIK   68 (96)
Q Consensus         8 ~~~~~~~~g~~~~l~c~~~~~--~~~~~~w~~~~~----~~~~-------------~~~~~~~~~~~~~~~~~~~~l~i~   68 (96)
                      +....+..|+.+.|.|.+.+.  +.+.+.|++...    ....             ...++.+.....   .....|.|.
T Consensus        15 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~---~~~~~L~I~   91 (257)
T 3gkz_A           15 SGPSLVKPSQTLSLTCSVTGDSVTSGYWSWIRQFPGNKLDYMGYISYRGSTYYNPSLKSRISITRDTS---KNQVYLQLK   91 (257)
T ss_dssp             ECCSEECTTCCEEEEEEEEESCCSSCEEEEEEECTTSCEEEEEEEETTCCEEECTTTTTTEEEEEEGG---GTEEEEEEC
T ss_pred             CCCeEEcCCCcEEEEEEEEcccccceEEEEEEECCCCCcEEEEEEecCCcEEecccccccEEEEEecC---CceEEEEEC
Confidence            344568899999999999884  467899988421    1110             012333222110   123579999


Q ss_pred             cCCCCCCeeEEEEEecC
Q psy4613          69 KITKYDLGSYKCIAKNS   85 (96)
Q Consensus        69 ~~~~~d~g~y~c~~~~~   85 (96)
                      +++..|+|.|.|.+.+.
T Consensus        92 ~v~~~DsG~Y~C~~~n~  108 (257)
T 3gkz_A           92 SVSSEDTATYYCSYFDS  108 (257)
T ss_dssp             SCCGGGCEEEEEEEECT
T ss_pred             CCChhhCEEEEEEEecC
Confidence            99999999999999886

>3dmm_D T-cell surface glycoprotein CD8 beta chain; T cell CO-receptor CD8AB MHC complex, immune response, membrane, MHC I, phosphoprotein, transmembrane; 2.60A {Mus musculus}

Probab=99.03  E-value=6.9e-09  Score=50.82  Aligned_cols=81  Identities=17%  Similarity=0.260  Sum_probs=53.3

Q ss_pred             CeEEecCceeeecCCCcEEEEEEeeec-ccceeEEeeccc-----e--eEec--------------ccceEEEEeccccc
Q psy4613           2 PVIHVPNQLVGAPIDTDVTLECYVEAY-PKSINYWVRDQG-----D--MVIS--------------SERYEVESISRSIF   59 (96)
Q Consensus         2 p~~~~~~~~~~~~~g~~~~l~c~~~~~-~~~~~~w~~~~~-----~--~~~~--------------~~~~~~~~~~~~~~   59 (96)
                      |.+...+..+.+..|+.+.|.|.+.+. ....+.|++...     .  ++..              ..++.+.....   
T Consensus         2 ~~v~Q~p~~~~v~~G~svtL~C~~s~~~~~~~v~Wyrq~~g~~g~~~~~l~~~~~~~~~~~~~~~~~~Rf~~~~~~~---   78 (150)
T 3dmm_D            2 SALIQTPSSLLVQTNHTAKMSCEVKSISKLTSIYWLRERQDPKDKYFEFLASWSSSKGVLYGESVDKKRNIILESSD---   78 (150)
T ss_dssp             --CEEECSEEEEETTSCEEEEEECCCSSCCCEEEEEEEECCSSCCEEEEEEEEETTTEEEECTTTTTTCCEEEESTT---
T ss_pred             CccEECCCeEEEeCCCcEEEEEEecCCCCCceEEEEEeCCCCCCCccEEEEEEecCCceEeCCCCccCcEEEEEcCC---
Confidence            556677778889999999999998764 556899997631     1  1110              11222211010   


Q ss_pred             eEEEEEEEccCCCCCCeeEEEEEecC
Q psy4613          60 DFKMRLTIKKITKYDLGSYKCIAKNS   85 (96)
Q Consensus        60 ~~~~~l~i~~~~~~d~g~y~c~~~~~   85 (96)
                      .....|.|.+++.+|+|.|.|.+...
T Consensus        79 ~~~~sL~I~~l~~~Dsg~Y~C~~~~~  104 (150)
T 3dmm_D           79 SRRPFLSIMNVKPEDSDFYFCATVGS  104 (150)
T ss_dssp             SSSCEEEESSCCGGGCEEEEEEEECS
T ss_pred             CCEEEEEECCCChhhCEEEEEEEecC
Confidence            12357999999999999999998753

>2eys_A NKT15; natural killer T cell receptor, immune system; 2.21A {Homo sapiens} PDB: 2eyr_A 2eyt_A 3huj_E* 3tyf_A 3tzv_A* 3sdx_E* 2po6_C* 2cde_A 3to4_C*

Probab=99.03  E-value=1.9e-08  Score=51.75  Aligned_cols=80  Identities=20%  Similarity=0.223  Sum_probs=54.3

Q ss_pred             eEEecCceeeecCCCcEEEEEEeeecccceeEEeeccc----eeE-e--c------ccceEEEEeccccceEEEEEEEcc
Q psy4613           3 VIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQG----DMV-I--S------SERYEVESISRSIFDFKMRLTIKK   69 (96)
Q Consensus         3 ~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~----~~~-~--~------~~~~~~~~~~~~~~~~~~~l~i~~   69 (96)
                      .+...+..+.+..|+.+.|.|.+.+...+.+.|++...    ..+ .  .      ..++......   ......|.|.+
T Consensus         5 ~v~Q~p~~~~v~~G~svtL~C~~s~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~Rfs~~~~~---~~~~~sL~I~~   81 (210)
T 2eys_A            5 QVEQSPQSLIILEGKNCTLQCNYTVSPFSNLRWYKQDTGRGPVSLTIMTFSENTKSNGRYTATLDA---DTKQSSLHITA   81 (210)
T ss_dssp             CEEEECSEEEEETTCCEEEEEEECCSSCCEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEET---TTTEEEEEESS
T ss_pred             eEEEeCCEEEEecCCCEEEEEEECCCCCCeEEEEEeCCCCCCEEEEEEecCCCCccCCCEEEEEcC---CCCEEEEEEcc
Confidence            34556677889999999999998776667899997531    111 1  1      1222221110   01236799999


Q ss_pred             CCCCCCeeEEEEEecC
Q psy4613          70 ITKYDLGSYKCIAKNS   85 (96)
Q Consensus        70 ~~~~d~g~y~c~~~~~   85 (96)
                      ++..|+|.|.|.+.+.
T Consensus        82 ~~~~Dsg~Y~C~~~~~   97 (210)
T 2eys_A           82 SQLSDSASYICVVSDR   97 (210)
T ss_dssp             CCGGGCEEEEEEEESC
T ss_pred             CCcccCceEEEEEEcc
Confidence            9999999999999873

>3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens}

Probab=99.02  E-value=5.2e-09  Score=54.88  Aligned_cols=74  Identities=16%  Similarity=0.285  Sum_probs=51.7

Q ss_pred             ceeeecCCCcEEEEEEeeec--ccceeEEeeccc----eeEe---------cccceEEEEeccccceEEEEEEEccCCCC
Q psy4613           9 QLVGAPIDTDVTLECYVEAY--PKSINYWVRDQG----DMVI---------SSERYEVESISRSIFDFKMRLTIKKITKY   73 (96)
Q Consensus         9 ~~~~~~~g~~~~l~c~~~~~--~~~~~~w~~~~~----~~~~---------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~   73 (96)
                      ..+.+..|+.+.|.|.+.+.  +.+.+.|++...    ..+.         ...++......     ....|.|.+++..
T Consensus        10 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~-----~~~~L~I~~v~~~   84 (256)
T 3ux9_B           10 PSVSGAPGQRVTISCSGSSSNIGSNYVSWYQQLPGTAPKLLIYDNNQRPSGVPDRFSGSKSG-----TSASLAITGLQSE   84 (256)
T ss_dssp             SEEEECTTCCEEEEEECCTTTTTTSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEET-----TEEEEEECSCCGG
T ss_pred             CcEEEcCCCcEEEEEecCCCCCCCceEEEEEECCCCCCEEEEEecCCCCCCcCCcEEEEccC-----CEEEEEECCCChh
Confidence            45778999999999999876  678999998421    1111         11233322110     2357999999999


Q ss_pred             CCeeEEEEEecCCC
Q psy4613          74 DLGSYKCIAKNSLG   87 (96)
Q Consensus        74 d~g~y~c~~~~~~g   87 (96)
                      |+|.|.|.+.+..+
T Consensus        85 DsG~Y~C~~~~~~~   98 (256)
T 3ux9_B           85 DEADYYCQVRDNNE   98 (256)
T ss_dssp             GCEEEEEEEEETTT
T ss_pred             hCEEEEEEEEECCC
Confidence            99999999988543

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}

Probab=99.02  E-value=2.9e-09  Score=55.71  Aligned_cols=68  Identities=15%  Similarity=0.131  Sum_probs=51.9

Q ss_pred             eeeecCCCcEEEEEEe-eecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCc
Q psy4613          10 LVGAPIDTDVTLECYV-EAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGE   88 (96)
Q Consensus        10 ~~~~~~g~~~~l~c~~-~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~   88 (96)
                      ...+..|+.+.|.|.+ .+.+.+.+.|++++..+...       .       ....|.|..++..|.|.|.|.+.+..+.
T Consensus        91 ~~~~~~g~~v~l~C~~~~~~p~~~v~W~~~g~~~~~~-------~-------~~~~l~i~~~~~~d~G~Y~C~~~n~~~~  156 (262)
T 3rjd_A           91 SRVFTEGEPLALRCHAWKDKLVYNVLYYRNGKAFKFF-------H-------WNSNLTILKTNISHNGTYHCSGMGKHRY  156 (262)
T ss_dssp             CSEEETTSCEEEEEEEGGGCCCEEEEEEETTEEEEEE-------E-------ECCCEEESSCCGGGCEEEEEEEESSSEE
T ss_pred             CeEEecCCeEEEEEEccCCCCCceEEEEECCcccccc-------C-------CCCeEEEEECChhhCEEEEEEEeCCCCc
Confidence            3456789999999998 66777899999986554211       0       1256889999999999999999998765


Q ss_pred             eEE
Q psy4613          89 VES   91 (96)
Q Consensus        89 ~~~   91 (96)
                      ...
T Consensus       157 ~~~  159 (262)
T 3rjd_A          157 TSA  159 (262)
T ss_dssp             EEE
T ss_pred             ccc
Confidence            444

>2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A*

Probab=99.02  E-value=1.3e-08  Score=53.08  Aligned_cols=71  Identities=14%  Similarity=0.201  Sum_probs=48.1

Q ss_pred             eeecCCCcEEEEEEeeecc--cceeEEeecc--ceeE---e------------cccceEEEEeccccceEEEEEEEccCC
Q psy4613          11 VGAPIDTDVTLECYVEAYP--KSINYWVRDQ--GDMV---I------------SSERYEVESISRSIFDFKMRLTIKKIT   71 (96)
Q Consensus        11 ~~~~~g~~~~l~c~~~~~~--~~~~~w~~~~--~~~~---~------------~~~~~~~~~~~~~~~~~~~~l~i~~~~   71 (96)
                      ..+..|+.+.|.|.+.+.+  .+.+.|++..  ..+.   .            ...++......   ......|.|.+++
T Consensus       132 ~~v~~G~~v~L~C~~~g~~~~~~~v~W~k~~~~~~~~~l~~~~~~g~~~~~~~~~~r~~~~~~~---~~~~~~L~I~~v~  208 (242)
T 2znx_A          132 SLVKPSQTLSLTCSVTGDSITSDYXSXIRKFPGNRLEYMGYVSYSGSTYYNPSLKSRISITRDT---SKNQYYLDLNSVT  208 (242)
T ss_dssp             SEECTTSCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSCEEECGGGTTCEEEEEET---TTTEEEEEECSCC
T ss_pred             ceecCCCeEEEEEEEEccccCCcceeeEeeCCCCCcEEEEEEecCCccccCccccCcEEEEecC---CCCEEEEEECCCC
Confidence            3478899999999998765  4689999852  2111   0            01233322110   0123579999999


Q ss_pred             CCCCeeEEEEEec
Q psy4613          72 KYDLGSYKCIAKN   84 (96)
Q Consensus        72 ~~d~g~y~c~~~~   84 (96)
                      ..|+|.|.|.+.+
T Consensus       209 ~~D~G~Y~C~a~~  221 (242)
T 2znx_A          209 TEDTATYYCANXD  221 (242)
T ss_dssp             GGGCEEEEEEETT
T ss_pred             cCcCEEEEEeccC
Confidence            9999999999987

>2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ...

Probab=99.02  E-value=4.9e-09  Score=53.66  Aligned_cols=75  Identities=19%  Similarity=0.202  Sum_probs=51.4

Q ss_pred             CceeeecCCCcEEEEEEee-ecc-cceeEEeeccc--ee--Ee---------cccceEEEEeccccceEEEEEEEccCCC
Q psy4613           8 NQLVGAPIDTDVTLECYVE-AYP-KSINYWVRDQG--DM--VI---------SSERYEVESISRSIFDFKMRLTIKKITK   72 (96)
Q Consensus         8 ~~~~~~~~g~~~~l~c~~~-~~~-~~~~~w~~~~~--~~--~~---------~~~~~~~~~~~~~~~~~~~~l~i~~~~~   72 (96)
                      +..+.+..|+.+.|.|.+. +.+ .+.+.|++.+.  ..  ..         ...++.....     .....|.|.+++.
T Consensus         7 p~~~~v~~G~~v~L~C~v~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-----~~~~~L~I~~v~~   81 (216)
T 2xzc_L            7 PPSVSAAPGQKVTISCSGSSSNIGNNYVSWYQQLPGTAPKLLIYDNNKRPSGIPDRFSGSKS-----GTSATLGITGLQT   81 (216)
T ss_dssp             CSEEEECTTCCEEEEEECCTTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEE-----TTEEEEEECSCCG
T ss_pred             CCcEEecCCCeEEEEEEeecCCCCCCeEEEEEeCCCCCcEEEEEecCccCCCCCCceEEecc-----CCEEEEEECCCCc
Confidence            4567899999999999954 432 57899998531  11  10         0123332210     1235799999999


Q ss_pred             CCCeeEEEEEecCCC
Q psy4613          73 YDLGSYKCIAKNSLG   87 (96)
Q Consensus        73 ~d~g~y~c~~~~~~g   87 (96)
                      .|.|.|.|.+.+..+
T Consensus        82 ~D~G~Y~C~~~~~~~   96 (216)
T 2xzc_L           82 GDEADYYCGTWDSSL   96 (216)
T ss_dssp             GGCEEEEEEEECTTS
T ss_pred             ccCEEEEEEEEeCCC
Confidence            999999999998765

>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H

Probab=99.02  E-value=9.2e-09  Score=54.16  Aligned_cols=77  Identities=14%  Similarity=0.227  Sum_probs=52.6

Q ss_pred             CceeeecCCCcEEEEEEeeecc--cceeEEeecc--cee--Ee--------------cccceEEEEeccccceEEEEEEE
Q psy4613           8 NQLVGAPIDTDVTLECYVEAYP--KSINYWVRDQ--GDM--VI--------------SSERYEVESISRSIFDFKMRLTI   67 (96)
Q Consensus         8 ~~~~~~~~g~~~~l~c~~~~~~--~~~~~w~~~~--~~~--~~--------------~~~~~~~~~~~~~~~~~~~~l~i   67 (96)
                      +..+.+..|+.+.|.|.+.+.+  .+.+.|++..  ...  +.              ...++.+.....   .....|.|
T Consensus         7 p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~---~~~~~L~I   83 (256)
T 1nqb_A            7 SGAELVKPGASVKLSCKASGYTFTSYWMHWVKQRPGRGLEWIGRIDPNSGGTKYNEKFKSKATLTVDKP---SSTAYMQL   83 (256)
T ss_dssp             CCCEEECTTCCEEEEEEECSSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGTTTEEEEEETT---TTEEEEEE
T ss_pred             CCCeeecCCCcEEEEEEeccccCCCceEEEEEECCCCCcEEEEEEecCCCceeeCcccCCeEEEEEecC---CCEEEEEE
Confidence            3456789999999999998765  5789999852  111  10              012333322100   02357999


Q ss_pred             ccCCCCCCeeEEEEEecCCC
Q psy4613          68 KKITKYDLGSYKCIAKNSLG   87 (96)
Q Consensus        68 ~~~~~~d~g~y~c~~~~~~g   87 (96)
                      .+++..|+|.|.|.+.+..|
T Consensus        84 ~~v~~~DsG~Y~C~~~n~~g  103 (256)
T 1nqb_A           84 SSLTSEDSAVYYCARYDYYG  103 (256)
T ss_dssp             CSCCGGGCEEEEEEECCTTS
T ss_pred             CcCChhhCEEEEEEEeeccC
Confidence            99999999999999998755

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}

Probab=99.02  E-value=2.8e-09  Score=56.71  Aligned_cols=67  Identities=21%  Similarity=0.242  Sum_probs=51.9

Q ss_pred             CCeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEE
Q psy4613           1 HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKC   80 (96)
Q Consensus         1 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c   80 (96)
                      +|.+...+..+.+..|+.+.|.|.+.+    .+.|++++..+.      ....       ....|.|.+++..|.|.|.|
T Consensus        12 ~P~i~~~~~~~~v~~G~~v~l~C~~~~----~i~W~~~~~~~~------~~~~-------~~~~L~i~~~~~~d~G~Y~C   74 (290)
T 2o26_X           12 PPSIHPAQSELIVEAGDTLSLTCIDPD----FVRWTFKTYFNE------MVEN-------KKNEWIQEKAEATRTGTYTC   74 (290)
T ss_dssp             CCEESSCSSEEEEETTSCEEEEEECTT----EEEEEEECSSSC------EEEE-------CSSEEEETTCCGGGCEEEEE
T ss_pred             CCEEeCCCCeEEEcCCCcEEEEECCCC----cEEEecCCccee------eecC-------CCceEEEeccCHHhCeEEEE
Confidence            366666667788999999999999877    889999865441      0111       11579999999999999999


Q ss_pred             EEec
Q psy4613          81 IAKN   84 (96)
Q Consensus        81 ~~~~   84 (96)
                      .+.+
T Consensus        75 ~~~n   78 (290)
T 2o26_X           75 SNSN   78 (290)
T ss_dssp             EESS
T ss_pred             EeeC
Confidence            9988

>1dee_B IGM RF 2A2; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1hez_B 1adq_H

Probab=99.02  E-value=9e-09  Score=53.11  Aligned_cols=78  Identities=12%  Similarity=0.261  Sum_probs=50.3

Q ss_pred             cCCCcEEEEEEeeec-ccc-eeEEee-ccceeEecccceEEEEeccccceEEEEEEEccCCC--CCCeeEEEEEecCCCc
Q psy4613          14 PIDTDVTLECYVEAY-PKS-INYWVR-DQGDMVISSERYEVESISRSIFDFKMRLTIKKITK--YDLGSYKCIAKNSLGE   88 (96)
Q Consensus        14 ~~g~~~~l~c~~~~~-~~~-~~~w~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~--~d~g~y~c~~~~~~g~   88 (96)
                      ..|..+.|.|.+.+. |.+ .+.|++ ++..+.. ....... .....+...+.|.|.....  .|.|.|.|.+.+..+.
T Consensus       139 ~~g~~v~L~C~~~g~~P~p~~v~W~~~~g~~l~~-~~~~~~~-~~~~~~~~~s~L~i~~~~~~~~d~g~y~C~v~n~~~~  216 (223)
T 1dee_B          139 NPSSTVAVGCLAQDFLPDSITFSWKYKNNSDISS-TRGFPSV-LRGGKYAATSQVLLPSKDVAQGTNEHVVCKVQHPNGN  216 (223)
T ss_dssp             CSSSEEEEEEEEEEEBSSCCEEEEEETTSCBCSC-EEECCCE-EETTEEEEEEEEEEECTTTTSTTCCEEEEEEECTTCC
T ss_pred             CCCCcEEEEEEEEEEeCCCeEEEeEccCCCccce-eEECCcc-ccCCeEEEEEEEEEcHHHhccCCCCEEEEEEEeCCCC
Confidence            578899999999886 666 899999 6544321 0000000 0011222346678877765  7789999999999887


Q ss_pred             eEEEE
Q psy4613          89 VESSI   93 (96)
Q Consensus        89 ~~~~~   93 (96)
                      ....+
T Consensus       217 ~~~~~  221 (223)
T 1dee_B          217 KEKDV  221 (223)
T ss_dssp             EEEEE
T ss_pred             Ccccc
Confidence            66544

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*

Probab=99.02  E-value=1.5e-10  Score=61.00  Aligned_cols=67  Identities=19%  Similarity=0.200  Sum_probs=51.6

Q ss_pred             eeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCce
Q psy4613          10 LVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEV   89 (96)
Q Consensus        10 ~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~   89 (96)
                      ...+..|+.+.|.|.+.+.|.|.+.|++++.... ...                .+  ..++..|.|.|.|.+.|..|..
T Consensus       194 ~~~v~~g~~~~l~C~~~g~P~p~i~W~~~~~~~~-~~g----------------~~--~~v~~~d~G~Y~C~a~N~~G~~  254 (265)
T 2oz4_A          194 NWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPL-PIG----------------ES--VTVTRDLEGTYLCRARSTQGEV  254 (265)
T ss_dssp             EEEEETTCEECCCCCCEEESCCEEEEEETTTEEC-CTT----------------SC--EECCGGGCEEEEEEEEETTEEE
T ss_pred             ccEEcCCCeEEEEeECccCCCCeEEEEECCcccC-CCC----------------cE--EEeehhhCeEEEEEEECCCCcE
Confidence            4567889999999999999999999999875221 110                11  1367799999999999999987


Q ss_pred             EEEEEe
Q psy4613          90 ESSIRL   95 (96)
Q Consensus        90 ~~~~~l   95 (96)
                      ...+.|
T Consensus       255 ~~~~~l  260 (265)
T 2oz4_A          255 TREVTV  260 (265)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            776654

>3r8b_B G5-8, enterotoxin type B; immunoglobulin-like, OB-fold, toxin-immune system complex; 2.95A {Rattus norvegicus}

Probab=99.02  E-value=2.9e-08  Score=47.13  Aligned_cols=78  Identities=19%  Similarity=0.275  Sum_probs=53.3

Q ss_pred             eEEecCceeeecCCCcEEEEEEeeecccceeEEeecc--c--eeEe-c-----------ccceEEEEeccccceEEEEEE
Q psy4613           3 VIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQ--G--DMVI-S-----------SERYEVESISRSIFDFKMRLT   66 (96)
Q Consensus         3 ~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~--~--~~~~-~-----------~~~~~~~~~~~~~~~~~~~l~   66 (96)
                      .+..++..+.+..|++++|.|.........+.|++..  .  .++. .           ..++......    .....|.
T Consensus         7 ~V~Q~p~~~~v~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~Rf~~~~~~----~~~~sL~   82 (125)
T 3r8b_B            7 AVTQSPRNKVAVTGEKVTLSCKQTNSYFNNMYWYRQDTGHELRLIFMSHGIRNVEKGDIPDGYKASRPS----QENFSLI   82 (125)
T ss_dssp             EEEEECSEEEEETTCCEEEEEEEESCCCSEEEEEEECTTSCEEEEEEESSTTCCEECSSCTTCEEEEEE----TTEEEEE
T ss_pred             cEEecCCeEEEcCCCcEEEEEEECCCCCCeEEEEEECCCCCcEEEEEEcCCccccCCCCCCceEEEecC----CCEEEEE
Confidence            4566777788999999999999876554589999742  1  1111 0           1122222110    1246799


Q ss_pred             EccCCCCCCeeEEEEEec
Q psy4613          67 IKKITKYDLGSYKCIAKN   84 (96)
Q Consensus        67 i~~~~~~d~g~y~c~~~~   84 (96)
                      |.+++.+|+|.|.|.+..
T Consensus        83 I~~~~~~Dsg~Y~C~~~~  100 (125)
T 3r8b_B           83 LELATPSQTSVYFCASGG  100 (125)
T ss_dssp             ETTCCGGGCEEEEEEEEE
T ss_pred             ECCCChhhCEEEEEEEcC
Confidence            999999999999999875

>2ptt_A CD48 antigen; CD244, CD48, NK cell receptor, X-RAY, immune system; 1.63A {Mus musculus} PDB: 2ptv_A

Probab=99.01  E-value=1.2e-09  Score=50.70  Aligned_cols=73  Identities=19%  Similarity=0.195  Sum_probs=50.3

Q ss_pred             cCceeeecCCCcEEEEEEe-eecccceeEEeeccce-eEe-c-c-----------cceEEEEeccccceEEEEEEEccCC
Q psy4613           7 PNQLVGAPIDTDVTLECYV-EAYPKSINYWVRDQGD-MVI-S-S-----------ERYEVESISRSIFDFKMRLTIKKIT   71 (96)
Q Consensus         7 ~~~~~~~~~g~~~~l~c~~-~~~~~~~~~w~~~~~~-~~~-~-~-----------~~~~~~~~~~~~~~~~~~l~i~~~~   71 (96)
                      +...+.+..|++++|.|.. .+.+.+.+.|++.... +.. . .           .++.+..       ....|.|.+++
T Consensus         9 ~~~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~~R~~~~~-------~~~sL~I~~v~   81 (110)
T 2ptt_A            9 SIPDINAYTGSNVTLKIHKDPLGPYRRITWLHTKNQKILEYNYNSTKTIFESEFKGRVYLEE-------NNGALHISNVR   81 (110)
T ss_dssp             CCCSEEEETTSCEEECSCSSCCCSCSEEEEEESTTBEEEEEETTSCEEECSSTTTTTEEECT-------TTCCEEESSCC
T ss_pred             CCCCEEEecCCcEEEeCCccCCCCcCEEEEEecCCccEEEEECCCCceeeccccCCcEEEeC-------CCccEEECCCC
Confidence            3455778999999999998 6666778999984322 110 0 0           1221110       12469999999


Q ss_pred             CCCCeeEEEEEecCC
Q psy4613          72 KYDLGSYKCIAKNSL   86 (96)
Q Consensus        72 ~~d~g~y~c~~~~~~   86 (96)
                      ..|+|.|.|.+.+..
T Consensus        82 ~~DsG~Y~C~v~~~~   96 (110)
T 2ptt_A           82 KEDKGTYYMRVLRET   96 (110)
T ss_dssp             GGGCEEEEEEEESSS
T ss_pred             cccCeEEEEEEEcCC
Confidence            999999999998754

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.01  E-value=5.8e-10  Score=62.54  Aligned_cols=68  Identities=19%  Similarity=0.204  Sum_probs=53.2

Q ss_pred             ceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCc
Q psy4613           9 QLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGE   88 (96)
Q Consensus         9 ~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~   88 (96)
                      ....+..|+.+.|.|.+.+.|.|.+.|++++...... ..               .+   .+...|.|.|.|.+.|..|.
T Consensus       378 ~~~~~~~g~~~~l~C~~~g~P~p~i~W~~~g~~~~~~-g~---------------~~---~v~~~d~G~Y~C~a~N~~G~  438 (450)
T 1z7z_I          378 GNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPI-GE---------------SV---TVTRDLEGTYLCRARSTQGE  438 (450)
T ss_dssp             SEEEEETTCEECCCCCCEEESCCEEEEEETTTEECCT-TS---------------CE---ECCGGGCEEEEEEEEETTEE
T ss_pred             CceeEcCCCeEEEEEecccCCCCcEEEEECCcccCCC-CC---------------eE---eEehhhCeEEEEEEEeCCCc
Confidence            4556788999999999999999999999987532211 10               11   46778999999999999998


Q ss_pred             eEEEEEe
Q psy4613          89 VESSIRL   95 (96)
Q Consensus        89 ~~~~~~l   95 (96)
                      ....+.|
T Consensus       439 ~~~~~~l  445 (450)
T 1z7z_I          439 VTREVTV  445 (450)
T ss_dssp             EEEEEEE
T ss_pred             eeEEEEE
Confidence            8777665

>2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN; 1.75A {Gallus gallus}

Probab=99.00  E-value=2.6e-09  Score=55.49  Aligned_cols=81  Identities=12%  Similarity=0.178  Sum_probs=53.4

Q ss_pred             cCceeeecCCCcEEEEEEeeec-cc-c-eeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEe
Q psy4613           7 PNQLVGAPIDTDVTLECYVEAY-PK-S-INYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAK   83 (96)
Q Consensus         7 ~~~~~~~~~g~~~~l~c~~~~~-~~-~-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~   83 (96)
                      .+....+..|+.+.|.|.+.+. |. + .+.|++++..+...... .........+.....|.|..+...|.|.|.|.+.
T Consensus        19 ~p~~~~v~~G~~v~L~C~~~g~~P~~p~~v~W~~~g~~~~~~~~~-~~~~~~~g~~~~~s~L~I~~~~~~D~g~Y~C~~~   97 (231)
T 2w59_A           19 PPSPGELYISLDAKLRCLVVNLPSDSSLSVTWTREKSGNLRPDPM-VLQEHFNGTYSASSAVPVSTQDWLSGERFTCTVQ   97 (231)
T ss_dssp             CCCHHHHHTSCCCEEEEEEEEESCCTTCEEEEECSSSSCCCCCCC-EEEECTTSCEEEEEEEECCHHHHHTTCCEEEEEE
T ss_pred             CcChhhcccCCceEEEEEEeCccCCCCeEEEEEcCCeeccccccc-cceECCCCcEEEEEEEEecchhccCCCEEEEEEE
Confidence            4444556789999999999885 53 5 89999876554111111 1111111222245678999998899999999999


Q ss_pred             cCCCc
Q psy4613          84 NSLGE   88 (96)
Q Consensus        84 ~~~g~   88 (96)
                      +..+.
T Consensus        98 ~~~~~  102 (231)
T 2w59_A           98 HEELP  102 (231)
T ss_dssp             CTTCS
T ss_pred             cCCCC
Confidence            87654

>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2

Probab=99.00  E-value=1.7e-08  Score=55.05  Aligned_cols=75  Identities=11%  Similarity=0.193  Sum_probs=51.2

Q ss_pred             ceeeecCCCcEEEEEEeeecc--cceeEEeecc--ceeE---e-------------cccceEEEEeccccceEEEEEEEc
Q psy4613           9 QLVGAPIDTDVTLECYVEAYP--KSINYWVRDQ--GDMV---I-------------SSERYEVESISRSIFDFKMRLTIK   68 (96)
Q Consensus         9 ~~~~~~~g~~~~l~c~~~~~~--~~~~~w~~~~--~~~~---~-------------~~~~~~~~~~~~~~~~~~~~l~i~   68 (96)
                      ..+.+..|+.+.|.|.+.+.+  .+.+.|+++.  ..+.   .             ...++.+....   ......|.|.
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~---~~~~~~L~I~   84 (344)
T 1za6_B            8 GAEVVKPGASVKISCKASGYTFTDHAIHWVKQNPGQRLEWIGYFSPGNDDFKYNERFKGKATLTADT---SASTAYVELS   84 (344)
T ss_dssp             CCEEECTTCCEEEEEEEESSCTTSSCEEEEEECSSSCEEEEEEEETTTTEEEECTTTBTTEEEEEET---TTTEEEEEEC
T ss_pred             CCeEEeCCCcEEEEEEcCCccccccEEEEEEECCCCCcEEEEEEecCCCceEECcccCCcEEEEEec---CCCEEEEEEC
Confidence            346789999999999998763  5789999862  2211   0             01233332210   0123579999


Q ss_pred             cCCCCCCeeEEEEEecCC
Q psy4613          69 KITKYDLGSYKCIAKNSL   86 (96)
Q Consensus        69 ~~~~~d~g~y~c~~~~~~   86 (96)
                      +++..|.|.|.|.+.+..
T Consensus        85 ~v~~~D~G~Y~C~~~n~~  102 (344)
T 1za6_B           85 SLRSEDTAVYFCTRSLNM  102 (344)
T ss_dssp             SCCGGGCEEEEEEETTTT
T ss_pred             CCCcccCEEEEEEEecCc
Confidence            999999999999998854

>3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus}

Probab=99.00  E-value=2.4e-10  Score=59.09  Aligned_cols=73  Identities=16%  Similarity=0.277  Sum_probs=43.5

Q ss_pred             CCCcEEEEEEeeecc-cc-eeEEeeccceeEec-ccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCC
Q psy4613          15 IDTDVTLECYVEAYP-KS-INYWVRDQGDMVIS-SERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLG   87 (96)
Q Consensus        15 ~g~~~~l~c~~~~~~-~~-~~~w~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g   87 (96)
                      .|+.+.|.|.+.+.+ .+ .+.|++++..+... .............+...+.|.|......|.|.|.|.+.|...
T Consensus       148 ~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~  223 (233)
T 3bqu_C          148 TSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTS  223 (233)
T ss_dssp             HTTEEEEEEEEEEEBSSCEEEEEEEC-----CCEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCCEEEEEEEC--
T ss_pred             cCCceEEEEEEccccCCceEEEEEECCeeCCCCceEecCCccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCC
Confidence            588999999998854 33 69999986544211 000000001111222456788888888899999999998644

>2oi9_C V beta, T cell receptor beta chain; TCR, MHC, immune system; 2.35A {Mus musculus} PDB: 2e7l_C

Probab=99.00  E-value=1.8e-08  Score=47.61  Aligned_cols=79  Identities=19%  Similarity=0.315  Sum_probs=52.6

Q ss_pred             CeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccc----eeEe-c-----------ccceEEEEeccccceEEEEE
Q psy4613           2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQG----DMVI-S-----------SERYEVESISRSIFDFKMRL   65 (96)
Q Consensus         2 p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~----~~~~-~-----------~~~~~~~~~~~~~~~~~~~l   65 (96)
                      +.+...+..+.+..|++++|.|... .....+.|++...    .++. .           ..++.... .   ......|
T Consensus         2 ~~v~q~p~~v~v~~G~~vtL~C~~~-~~~~~v~W~rq~~g~~~~~l~~~~~~~~~~~~~~~~R~~~~~-~---~~~~~sL   76 (121)
T 2oi9_C            2 AAVTQSPRNKVAVTGEKVTLSCNQT-NNHNNMYWYRQDTGHELRLIYYSYGAGSTEKGDIPDGYKASR-P---SQENFSL   76 (121)
T ss_dssp             CSEEEECSEEEEETTCCEEEEEEES-SCCSEEEEEEESSSSCCEEEEEESSTTCCEECSSCTTEEEEC-C---SSSEEEE
T ss_pred             CceEeCCCeEEecCCCcEEEEEEec-CCCCeEEEEEECCCCCcEEEEEECCCceeeCCccCCCeEEEc-C---CCCEEEE
Confidence            3456667778899999999999953 3456899987531    1111 0           11222211 0   0124679


Q ss_pred             EEccCCCCCCeeEEEEEecC
Q psy4613          66 TIKKITKYDLGSYKCIAKNS   85 (96)
Q Consensus        66 ~i~~~~~~d~g~y~c~~~~~   85 (96)
                      .|.+++.+|+|.|.|.+.+.
T Consensus        77 ~I~~v~~~DsG~Y~C~~~~~   96 (121)
T 2oi9_C           77 TLESATPSQTSVYFCASGGG   96 (121)
T ss_dssp             EESSCCGGGCEEEEEEEESS
T ss_pred             EECCCCHHHCEEEEEEEccC
Confidence            99999999999999998864

>1neu_A Myelin P0 protein; structural protein, glycoprotein, transmembrane, phosphorylation, immunoglobulin fold, signal; 1.90A {Rattus norvegicus} SCOP: b.1.1.1

Probab=99.00  E-value=1.8e-08  Score=47.38  Aligned_cols=79  Identities=18%  Similarity=0.195  Sum_probs=48.7

Q ss_pred             cCceeeecCCCcEEEEEEeeec----ccceeEEeeccce------eEe-c------------ccceEEEEeccccceEEE
Q psy4613           7 PNQLVGAPIDTDVTLECYVEAY----PKSINYWVRDQGD------MVI-S------------SERYEVESISRSIFDFKM   63 (96)
Q Consensus         7 ~~~~~~~~~g~~~~l~c~~~~~----~~~~~~w~~~~~~------~~~-~------------~~~~~~~~~~~~~~~~~~   63 (96)
                      .+..+.+..|+++.|.|.+...    ....+.|++....      +.. .            ..+..+..   +......
T Consensus         5 ~~~~v~~~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~R~~~~~---~~~~~~~   81 (124)
T 1neu_A            5 TDREVYGAVGSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTFKERIQWVG---DPSWKDG   81 (124)
T ss_dssp             CCSEEEEETTSCEEECCEEECSSCCCSCCEEEEEEEETTCCCCEEEEEEETTEEEECSSSTTTTCEEECC---BGGGTBC
T ss_pred             cCCeEEEEeCCeEEEEeEEeCCCCCCCceEEEEEEcCCCCCceEEEEEecCCeeccccCccccCcEEEec---CCcCCeE
Confidence            3456778999999999998643    4568899876431      110 0            01111110   0000124


Q ss_pred             EEEEccCCCCCCeeEEEEEecCCCc
Q psy4613          64 RLTIKKITKYDLGSYKCIAKNSLGE   88 (96)
Q Consensus        64 ~l~i~~~~~~d~g~y~c~~~~~~g~   88 (96)
                      .|.|.+++..|+|.|.|.+.+..+.
T Consensus        82 sL~I~~v~~~D~G~Y~C~v~~~~~~  106 (124)
T 1neu_A           82 SIVIHNLDYSDNGTFTCDVKNPPDI  106 (124)
T ss_dssp             CEEECSCCGGGCEEEEEEEEC----
T ss_pred             EEEEccCChhhCEEEEEEEEcCCCC
Confidence            6999999999999999999987653

>3fku_X Neutralizing antibody F10; influenza, hemagglutinin, SCFV, F membrane, envelope protein, fusion protein, membrane, trans virion; HET: NAG BMA; 3.20A {Homo sapiens}

Probab=99.00  E-value=3.7e-09  Score=56.35  Aligned_cols=71  Identities=21%  Similarity=0.291  Sum_probs=49.1

Q ss_pred             eeecCCCcEEEEEEeee-cc-cceeEEeecc--ceeEe-----------cccceEEEEeccccceEEEEEEEccCCCCCC
Q psy4613          11 VGAPIDTDVTLECYVEA-YP-KSINYWVRDQ--GDMVI-----------SSERYEVESISRSIFDFKMRLTIKKITKYDL   75 (96)
Q Consensus        11 ~~~~~g~~~~l~c~~~~-~~-~~~~~w~~~~--~~~~~-----------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~   75 (96)
                      ..+..|++++|.|.+.+ .+ .+.+.|++..  .....           ...++......     ....|.|.+++..|+
T Consensus       149 ~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~-----~~~~L~I~~v~~~Ds  223 (280)
T 3fku_X          149 VSKGLRQTATLTCTGNSNNVGNQGAAWLQQHQGHPPKLLSYRNNDRPSGISERFSASRSG-----NTASLTITGLQPEDE  223 (280)
T ss_dssp             EEECTTCCEEEEEECCCCCCCTTCCEEEEECSSSCCEESCCTTCCCCSSSCTTEEEEEET-----TEEEEEECSCCGGGC
T ss_pred             EEEecCCCEEEEEEecCCCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCCEEEEccC-----CEEEEEECCCCHHHC
Confidence            67889999999999987 33 4789998742  11110           01233332211     235699999999999


Q ss_pred             eeEEEEEecCC
Q psy4613          76 GSYKCIAKNSL   86 (96)
Q Consensus        76 g~y~c~~~~~~   86 (96)
                      |.|.|.+.+..
T Consensus       224 G~Y~C~~~~~~  234 (280)
T 3fku_X          224 ADYYCSTWDSS  234 (280)
T ss_dssp             SEEEEEEEETT
T ss_pred             EEEEEEEecCC
Confidence            99999998765

>3bik_B Programmed cell death protein 1; CO-stimulation, receptor-ligand complex, immunoglobulin-like sandwich, T cell, B cell, programmed death; 2.65A {Mus musculus} SCOP: b.1.1.1

Probab=99.00  E-value=4.9e-08  Score=46.90  Aligned_cols=80  Identities=15%  Similarity=0.289  Sum_probs=52.9

Q ss_pred             EEecCceeeecCCCcEEEEEEeeecc-cceeEEeecc--c--eeEe--c--------ccceEEEEeccccceEEEEEEEc
Q psy4613           4 IHVPNQLVGAPIDTDVTLECYVEAYP-KSINYWVRDQ--G--DMVI--S--------SERYEVESISRSIFDFKMRLTIK   68 (96)
Q Consensus         4 ~~~~~~~~~~~~g~~~~l~c~~~~~~-~~~~~w~~~~--~--~~~~--~--------~~~~~~~~~~~~~~~~~~~l~i~   68 (96)
                      +...+..+.+..|++++|.|...... ...+.|++..  .  ..+.  .        ..++......   ......|.|.
T Consensus        12 v~Q~p~~v~v~~G~~vtL~C~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~Rf~~~~~~---~~~~~~L~I~   88 (134)
T 3bik_B           12 LTFYPAWLTVSEGANATFTCSLSNWSEDLMLNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQIIQLP---NRHDFHMNIL   88 (134)
T ss_dssp             EEEECSEEEEETTSCEEEEEEESSCCTTCEEEEEEECTTCCEEEEEEEETTEEEESSCTTEEEEECT---TSSEEEEEEC
T ss_pred             EEECCCeEEEeCCCCEEEEEEeCCCCCCcEEEEEEcCCCCCceEEEEEcCCCCCcccCCCEEEEecC---CCCEEEEEEC
Confidence            34456677899999999999987643 4689999752  1  1111  0        1233322111   1124679999


Q ss_pred             cCCCCCCeeEEEEEecCC
Q psy4613          69 KITKYDLGSYKCIAKNSL   86 (96)
Q Consensus        69 ~~~~~d~g~y~c~~~~~~   86 (96)
                      +++..|+|.|.|.+.+..
T Consensus        89 ~~~~~Dsg~Y~C~~~~~~  106 (134)
T 3bik_B           89 DTRRNDSGIYLCGAISLH  106 (134)
T ss_dssp             SCCGGGCEEEEEEEEECS
T ss_pred             CCChHHCEEEEEEEEeCC
Confidence            999999999999987643

>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A

Probab=99.00  E-value=1.1e-09  Score=55.89  Aligned_cols=81  Identities=15%  Similarity=0.146  Sum_probs=52.7

Q ss_pred             cCceee-ecCCCcEEEEEEeeecc---c-ceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEE
Q psy4613           7 PNQLVG-APIDTDVTLECYVEAYP---K-SINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCI   81 (96)
Q Consensus         7 ~~~~~~-~~~g~~~~l~c~~~~~~---~-~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~   81 (96)
                      ++.... +..|+.+.|.|.+.+.+   . ..+.|++++..+......... ......+.....|.|.+++..|.|.|.|.
T Consensus         8 ~P~~~~~v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~-~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~   86 (207)
T 2vol_A            8 PPKPKDVLTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTKPRE-EQFNSTFRSVSELPIMHQDWLNGKEFKCR   86 (207)
T ss_dssp             CCCHHHHHSTTSCCEEEEEEEEECTTCCCCEEEEEETTEEECCCEEECCC-EETTTEEEEEEEEECCHHHHHTTCCEEEE
T ss_pred             CcChhhhhccCCceEEEEEEeCcccCCCceEEEEEECCccccccccCCCc-CcCCCcEEEEEEEEEehhHcCCCCEEEEE
Confidence            444333 78999999999998874   2 389999987543211000000 00111122346789999999999999999


Q ss_pred             EecCCCc
Q psy4613          82 AKNSLGE   88 (96)
Q Consensus        82 ~~~~~g~   88 (96)
                      +.+..+.
T Consensus        87 a~~~~~~   93 (207)
T 2vol_A           87 VNSAAFP   93 (207)
T ss_dssp             EECTTCS
T ss_pred             EEccCCC
Confidence            9998774

>1ypz_E T cell receptor delta, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=98.99  E-value=2.7e-08  Score=50.95  Aligned_cols=80  Identities=19%  Similarity=0.191  Sum_probs=54.3

Q ss_pred             eEEecCceeeecCCCcEEEEEEeeecccceeEEeeccc----eeEe-------cccceEEEEeccccceEEEEEEEccCC
Q psy4613           3 VIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQG----DMVI-------SSERYEVESISRSIFDFKMRLTIKKIT   71 (96)
Q Consensus         3 ~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~----~~~~-------~~~~~~~~~~~~~~~~~~~~l~i~~~~   71 (96)
                      .+...+..+.+..|+.+.|.|.+.+.. +.+.|++...    ..+.       ...++......  .......|.|.+++
T Consensus         3 ~v~q~p~~v~v~~G~~v~L~C~~~~~~-~~v~W~r~~~~~~~~~~~~~~~~~~~~~R~~~~~~~--~~~~~~~L~I~~v~   79 (207)
T 1ypz_E            3 QVEQSPSALSLHEGTDSALRCNFTTTM-RSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDS--KERRYSTLHIRDAQ   79 (207)
T ss_dssp             SEEESCSEEEEETTCCEEEEEEESSCC-SEEEEEEECTTSCCEEEEEESSEEEEETTEEEEECT--TTCSEEEEEECSCC
T ss_pred             ccEECCCeEEEccCCcEEEEEEEeCCC-eEEEEEEeCCCCCeEEEEEEccCCccCCCEEEEecc--CCCCEEEEEECCCC
Confidence            355667778899999999999987643 4799987531    1111       12333333210  00124679999999


Q ss_pred             CCCCeeEEEEEecC
Q psy4613          72 KYDLGSYKCIAKNS   85 (96)
Q Consensus        72 ~~d~g~y~c~~~~~   85 (96)
                      ..|+|.|.|.+.+.
T Consensus        80 ~~D~G~Y~C~~~~~   93 (207)
T 1ypz_E           80 LEDSGTYFCAADTW   93 (207)
T ss_dssp             GGGCEEEEEEEECB
T ss_pred             HHHCEEEEEEEecC
Confidence            99999999999875

>2aw2_A B and T lymphocyte attenuator; IGI domain, IGG domain, TNFRSF, protein-protein complex, IMM system; HET: NAG FUL; 2.80A {Homo sapiens} SCOP: b.1.1.1

Probab=98.99  E-value=2.4e-08  Score=45.76  Aligned_cols=80  Identities=20%  Similarity=0.265  Sum_probs=56.1

Q ss_pred             ceeeecCCCcEEEEEEeee-cccceeEEeeccceeEec-ccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCC
Q psy4613           9 QLVGAPIDTDVTLECYVEA-YPKSINYWVRDQGDMVIS-SERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSL   86 (96)
Q Consensus         9 ~~~~~~~g~~~~l~c~~~~-~~~~~~~w~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~   86 (96)
                      ....+..|..+.|.|.+.. .+.|.+.|-+.+...... ..+.+.+....+.  ....|.+..+...|.|.|.|.+....
T Consensus        19 S~hsv~~G~~f~leCpv~yc~~rP~VtWcKln~~~c~~L~~~~q~w~E~~N~--s~fvLhf~~V~~sDsGsYRCsAn~~s   96 (120)
T 2aw2_A           19 SEHSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNI--SFFILHFEPVLPNDNGSYRCSANFQS   96 (120)
T ss_dssp             EEEEEETTSCEEEEEEEECSSSCCEEEEEEECSSCEEECCSSCEEEEECSSC--EEEEEEESSCCGGGCEEEEEEEEETT
T ss_pred             ccceEecCCeEEEEccEEeccCCCceEEEecCCceEEECccccccceecCCe--eEEEEEEeeeeEcCCcceEEEeeCCC
Confidence            3456789999999999998 689999998865422211 1222222211111  34678999999999999999999887


Q ss_pred             CceE
Q psy4613          87 GEVE   90 (96)
Q Consensus        87 g~~~   90 (96)
                      |...
T Consensus        97 g~ie  100 (120)
T 2aw2_A           97 NLIE  100 (120)
T ss_dssp             EEEE
T ss_pred             CcEE
Confidence            7643

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R

Probab=98.99  E-value=2e-09  Score=57.81  Aligned_cols=70  Identities=23%  Similarity=0.387  Sum_probs=53.8

Q ss_pred             eeecCCCcEEEEEEe------eecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEe-
Q psy4613          11 VGAPIDTDVTLECYV------EAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAK-   83 (96)
Q Consensus        11 ~~~~~g~~~~l~c~~------~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~-   83 (96)
                      ..+..|+.+.|.|.+      .+.|.+.+.|++++..+.....+...         ....|.|.++...|.|.|.|.+. 
T Consensus       113 ~~~~~g~~v~l~C~~~~~~~~~g~p~~~i~W~k~~~~l~~~~~~~~~---------~~~~L~i~~v~~~d~G~Y~C~a~~  183 (315)
T 1itb_B          113 QKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSG---------VKDRLIVMNVAEKHRGNYTCHASY  183 (315)
T ss_dssp             EEEETTSCEEEECSSCTTTCTTTTCCCCCEEEETTEECCCCSSSEEE---------ETTEEEESSCCGGGCEEEEEEEEE
T ss_pred             eEEecCCCeEEEEecccccccCCCCCCEEEEEECCEECCCccceEee---------cCceEEEEeceehhCcEEEEEEEc
Confidence            457789999999998      78888999999987665432223221         12479999999999999999999 


Q ss_pred             cCCCce
Q psy4613          84 NSLGEV   89 (96)
Q Consensus        84 ~~~g~~   89 (96)
                      +..|..
T Consensus       184 n~~g~~  189 (315)
T 1itb_B          184 TYLGKQ  189 (315)
T ss_dssp             EETTEE
T ss_pred             CCCCcE
Confidence            677754

>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1

Probab=98.99  E-value=6.8e-09  Score=58.01  Aligned_cols=80  Identities=18%  Similarity=0.340  Sum_probs=56.4

Q ss_pred             eEEecCceeeecCCCcEEEEEEeeeccc----ceeEEeecc--cee--Ee---------cccceEEEEeccccceEEEEE
Q psy4613           3 VIHVPNQLVGAPIDTDVTLECYVEAYPK----SINYWVRDQ--GDM--VI---------SSERYEVESISRSIFDFKMRL   65 (96)
Q Consensus         3 ~~~~~~~~~~~~~g~~~~l~c~~~~~~~----~~~~w~~~~--~~~--~~---------~~~~~~~~~~~~~~~~~~~~l   65 (96)
                      .+...+..+.+..|+.+.|.|.+.+.+.    +.+.|+++.  ..+  ..         ...++.....     .....|
T Consensus         3 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~-----~~~~~L   77 (438)
T 1qgc_4            3 VLTQSPASLAVSLGQRATISCRASESVDSSGHSFMHWYQQKPGQPPKLLIYRASNLESGIPDRFSGSGS-----RTDFTL   77 (438)
T ss_dssp             CEEEECSEEEECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEESSSSCBCSSCCTTEEEEEE-----TTEEEE
T ss_pred             ceEecCCeEEeeCCCCEEEEEecCCCcccCCcceEEEEEECCCCCcEEEEEECcccCCCccCcEEEEcc-----CCcEEE
Confidence            3455667788999999999999888776    489999853  111  10         1123333221     024679


Q ss_pred             EEccCCCCCCeeEEEEEecCCC
Q psy4613          66 TIKKITKYDLGSYKCIAKNSLG   87 (96)
Q Consensus        66 ~i~~~~~~d~g~y~c~~~~~~g   87 (96)
                      .|.+++..|.|.|.|.+.+..+
T Consensus        78 ~I~~v~~~D~G~Y~C~a~n~~~   99 (438)
T 1qgc_4           78 TIDPVEADDVATYYCQQSNEVP   99 (438)
T ss_dssp             EESSCCGGGCEEEEEEECSSTT
T ss_pred             EeCCCcCcCCeeEEEEEecCCC
Confidence            9999999999999999998765

>1op3_H FAB 2G12, heavy chain; domain-swapped FAB 2G12, anti-carbohydrate antibody, immune system; HET: MAN; 1.75A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1om3_H* 1op5_H* 3oay_M* 1zlu_H* 1zlv_H* 1zlw_H* 2oqj_B 1zls_H* 3ob0_H* 3oau_H* 3oaz_H* 3ghe_H 3eyf_B 3eyo_B 3ghb_H 3c2a_H 1q1j_H 2fl5_H*

Probab=98.99  E-value=1.4e-08  Score=52.45  Aligned_cols=75  Identities=23%  Similarity=0.276  Sum_probs=51.5

Q ss_pred             eeeecCCCcEEEEEEeeecc--cceeEEeecc--cee--Ee--------------cccceEEEEeccccceEEEEEEEcc
Q psy4613          10 LVGAPIDTDVTLECYVEAYP--KSINYWVRDQ--GDM--VI--------------SSERYEVESISRSIFDFKMRLTIKK   69 (96)
Q Consensus        10 ~~~~~~g~~~~l~c~~~~~~--~~~~~w~~~~--~~~--~~--------------~~~~~~~~~~~~~~~~~~~~l~i~~   69 (96)
                      .+.+..|+.+.|.|.+.+.+  .+.+.|++..  ..+  ..              ...++.+.....   .....|.|.+
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~---~~~~sL~I~~   85 (225)
T 1op3_H            9 GGLVKAGGSLILSCGVSNFRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDL---EDFVYLQMHK   85 (225)
T ss_dssp             CEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEETT---TTEEEEEECS
T ss_pred             CeEecCCCCEEEEEEecCcccCCceEEEEEeCCCCCcEEEEEEccCCCccccCcccCCceEEEecCC---CCEEEEEECC
Confidence            45789999999999998765  6789998753  111  10              012333322100   0236799999


Q ss_pred             CCCCCCeeEEEEEecCCC
Q psy4613          70 ITKYDLGSYKCIAKNSLG   87 (96)
Q Consensus        70 ~~~~d~g~y~c~~~~~~g   87 (96)
                      ++..|.|.|.|.+.+..|
T Consensus        86 v~~~D~G~Y~C~~~~~~~  103 (225)
T 1op3_H           86 MRVEDTAIYYCARKGSDR  103 (225)
T ss_dssp             CCGGGCEEEEEEEECCSS
T ss_pred             CChhhCEEEEEEEecCCC
Confidence            999999999999998754

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...

Probab=98.99  E-value=6.6e-10  Score=55.61  Aligned_cols=76  Identities=16%  Similarity=0.194  Sum_probs=51.8

Q ss_pred             eeeecCCCcEEEEEEeeecccceeEEeeccceeEec-------------ccceEEEEeccccceEEEEEEEccCCCCCCe
Q psy4613          10 LVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVIS-------------SERYEVESISRSIFDFKMRLTIKKITKYDLG   76 (96)
Q Consensus        10 ~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g   76 (96)
                      .+.+..|+.+.|.|.+.+.+.+.+.|++++......             ..+.....  .........|.|.+++..|.|
T Consensus         4 ~v~~~~G~~v~L~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~~~~L~i~~v~~~D~G   81 (184)
T 2ny1_B            4 VVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRR--SLWDQGNFPLIIKNLKIEDSD   81 (184)
T ss_dssp             EEEEETTSCEEECCBCSSSSCCCEEEEETTCCEEEEEETTEEEECSCTTGGGEECCG--GGGGGTBCCEEECSCCGGGCE
T ss_pred             cEEEeCCCCEEEEEEEcCCCceEEEEEeCCccceEEecCceEecCChhhCCcccccc--ccccCCeEEEEEecCCHHHCE
Confidence            456889999999999988888899999986532211             01111100  000001345999999999999


Q ss_pred             eEEEEEecCCC
Q psy4613          77 SYKCIAKNSLG   87 (96)
Q Consensus        77 ~y~c~~~~~~g   87 (96)
                      .|.|.+.+..+
T Consensus        82 ~Y~C~~~~~~~   92 (184)
T 2ny1_B           82 TYICEVEDQKE   92 (184)
T ss_dssp             EEEEEETTEEE
T ss_pred             EEEEEEEcCCC
Confidence            99999987654

>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=98.99  E-value=3.5e-09  Score=56.01  Aligned_cols=77  Identities=13%  Similarity=0.085  Sum_probs=51.7

Q ss_pred             CCeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEE
Q psy4613           1 HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKC   80 (96)
Q Consensus         1 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c   80 (96)
                      +|.+...+. ..+..|+.++|.|.+.. +.+.+.|++++..+....    .. ...........|.|.+++..|+|.|.|
T Consensus         7 kP~i~~~P~-~~V~~G~~VtL~C~~~~-~~~~~~W~k~g~~~~~~~----~~-~~~~~~~~~~~L~I~~v~~~DsG~Y~C   79 (257)
T 1b6u_A            7 KPSLLAHPG-PLVKSEETVILQCWSDV-RFQHFLLHREGKFKDTLH----LI-GEHHDGVSKANFSIGPMMQDLAGTYRC   79 (257)
T ss_dssp             CCEECCBSC-SEEESSCCEEEEEEESS-CCSEEEEEEESTTCEEEE----EE-CBCCTTCEEEEEEECSCCTTTCEEEEE
T ss_pred             CCEEEEcCC-CEecCCCCEEEEEecCC-CCcEEEEEECCCCCCcce----ee-eeccCCCceEEEEeecCCcccCEEEEE
Confidence            355655554 55789999999999864 566889999865432110    00 000001134679999999999999999


Q ss_pred             EEec
Q psy4613          81 IAKN   84 (96)
Q Consensus        81 ~~~~   84 (96)
                      .+.+
T Consensus        80 ~a~~   83 (257)
T 1b6u_A           80 YGSV   83 (257)
T ss_dssp             EEEC
T ss_pred             eEec
Confidence            9875

>1hkf_A NKP44, NK cell activating receptor; natural cytotoxicity receptor, immunoglobulin domain; 2.2A {Homo sapiens} SCOP: b.1.1.1

Probab=98.99  E-value=8.2e-08  Score=45.43  Aligned_cols=79  Identities=15%  Similarity=0.259  Sum_probs=52.2

Q ss_pred             EecCceeeecCCCcEEEEEEeeecc--cceeEEeeccc-----eeEec--------ccceEEEEeccccceEEEEEEEcc
Q psy4613           5 HVPNQLVGAPIDTDVTLECYVEAYP--KSINYWVRDQG-----DMVIS--------SERYEVESISRSIFDFKMRLTIKK   69 (96)
Q Consensus         5 ~~~~~~~~~~~g~~~~l~c~~~~~~--~~~~~w~~~~~-----~~~~~--------~~~~~~~~~~~~~~~~~~~l~i~~   69 (96)
                      ...+..+.+..|++++|.|......  ...+.|++...     .++..        ..++.+.....   .....|.|.+
T Consensus        14 ~~~~~~v~~~~G~svtL~C~~s~~~~~~~~v~W~rq~~~~~~~~li~~~~~~~~~~~~R~~~~~~~~---~~~~sL~I~~   90 (122)
T 1hkf_A           14 QSKAQVLQSVAGQTLTVRCQYPPTGSLYEKKGWCKEASALVCIRLVTSSKPRTMAWTSRFTIWDDPD---AGFFTVTMTD   90 (122)
T ss_dssp             -CCCEEEEECTTCCEEEEEECCCCTTCCCEEEEEEEEETTEEEEEEEECSTTCCBCSTTEEEEEETT---TTEEEEEECS
T ss_pred             ccCCceEEEecCCCEEEEeEccCCCCcccEEEEEcCCCCCCceEEEEeCCeEeEeecCcEEEEEcCc---CCEEEEEEeC
Confidence            4456677899999999999987532  35789987632     11111        12333221111   1246799999


Q ss_pred             CCCCCCeeEEEEEecCC
Q psy4613          70 ITKYDLGSYKCIAKNSL   86 (96)
Q Consensus        70 ~~~~d~g~y~c~~~~~~   86 (96)
                      ++..|+|.|.|.+....
T Consensus        91 l~~~Dsg~Y~C~v~~~~  107 (122)
T 1hkf_A           91 LREEDSGHYWCRIYRPS  107 (122)
T ss_dssp             CCGGGCEEEEEEEECTT
T ss_pred             CCHHHCEEEEEEEEcCC
Confidence            99999999999998754

>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1

Probab=98.98  E-value=9.9e-10  Score=61.35  Aligned_cols=73  Identities=19%  Similarity=0.312  Sum_probs=49.5

Q ss_pred             CCCcEEEEEEeee-cccc-eeEEeeccceeEecccceEEEE--eccccceEEEEEEEccCCCCCCeeEEEEEecCCCc
Q psy4613          15 IDTDVTLECYVEA-YPKS-INYWVRDQGDMVISSERYEVES--ISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGE   88 (96)
Q Consensus        15 ~g~~~~l~c~~~~-~~~~-~~~w~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~   88 (96)
                      .|+.+.|.|.+.+ .|.+ .+.|++++..+. .........  .....+.....|.|..+...|.|.|.|.+.|..+.
T Consensus       130 ~g~~~~l~C~~~g~~p~~~~v~W~k~g~~~~-~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~  206 (438)
T 1qgc_4          130 TSGGASVVCFLNNFYPKDINVKWKIDGSERQ-NGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTST  206 (438)
T ss_dssp             HTTEEEEEEEEEEEBSSCEEEEEEETTEEEC-TTEEEEEECCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEEETTCS
T ss_pred             cCCceEEEEEEccccCCCcEEEEEECCEEcC-CCceeccccccCCCCcEEEEEEEEEeCcccCCCCeEEEEEEecccC
Confidence            4779999999987 5666 899999865442 110111110  01112223568999999999999999999998776

>4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A*

Probab=98.98  E-value=3.9e-09  Score=53.82  Aligned_cols=82  Identities=17%  Similarity=0.206  Sum_probs=52.3

Q ss_pred             ceeeecCCCcEEEEEEeeecccc---eeEEeeccceeEec-c--------------cceEEEEec--cccceEEEEEEEc
Q psy4613           9 QLVGAPIDTDVTLECYVEAYPKS---INYWVRDQGDMVIS-S--------------ERYEVESIS--RSIFDFKMRLTIK   68 (96)
Q Consensus         9 ~~~~~~~g~~~~l~c~~~~~~~~---~~~w~~~~~~~~~~-~--------------~~~~~~~~~--~~~~~~~~~l~i~   68 (96)
                      ..+.+..|+++.|.|.+.+.+.+   .+.|++++...... .              .+.......  ........+|.|.
T Consensus         9 ~~V~~~~G~~v~L~C~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~   88 (225)
T 4fmk_A            9 PEVRGRLGGTVELPCHLLPPTTERVSQVTWQRLDGTVVAAFHPSFGVDFPNSQFSKDRLSFVRARPETNADLRDATLAFR   88 (225)
T ss_dssp             SEEEEETTSCEEECCEECSSCCCEEEEEEEECTTSCEEEEEETTTEEECCCTTSCTTTEEECCCSCSCCSSCCBCCEEEC
T ss_pred             CEEEEecCCCEEEEEEEECCCCCceeEEEEEECCCcceEEEecccceeeccccccccceeeeccccccccccCcEEEEEc
Confidence            35678899999999999876655   47899876443210 0              011100000  0000123569999


Q ss_pred             cCCCCCCeeEEEEEecCCCceE
Q psy4613          69 KITKYDLGSYKCIAKNSLGEVE   90 (96)
Q Consensus        69 ~~~~~d~g~y~c~~~~~~g~~~   90 (96)
                      +++..|.|.|.|.+.+..+...
T Consensus        89 ~v~~~D~G~Y~C~~~~~~~~~~  110 (225)
T 4fmk_A           89 GLRVEDEGNYTCEFATFPNGTR  110 (225)
T ss_dssp             SCCGGGCEEEEEEEEEETTEEE
T ss_pred             cCCHHHCcceEEEEEeCCCcce
Confidence            9999999999999988666443

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A

Probab=98.98  E-value=2.4e-09  Score=62.50  Aligned_cols=65  Identities=23%  Similarity=0.326  Sum_probs=52.6

Q ss_pred             ceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCc
Q psy4613           9 QLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGE   88 (96)
Q Consensus         9 ~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~   88 (96)
                      ....+..|..+.|.|.+.+.|.+.+.|++++..+.                 ....|.|.++...|.|.|.|.+.|..|.
T Consensus       389 ~~~~~~~g~~~~l~C~~~g~p~~~i~W~~~g~~~~-----------------~~~~L~i~~~~~~d~G~Y~C~a~n~~g~  451 (642)
T 1e07_A          389 SYTYYRPGVNLSLSCHAASNPPAQYSWLIDGNIQQ-----------------HTQELFISNITEKNSGLYTCQANNSASG  451 (642)
T ss_pred             CceEecCCCcEEEEEEcCccCCCeEEEEECCEEcC-----------------CCceEEEccCChhhCeEEEEEEEcCCCC
Confidence            34456789999999999999999999999864432                 1145889999999999999999998875


Q ss_pred             eE
Q psy4613          89 VE   90 (96)
Q Consensus        89 ~~   90 (96)
                      ..
T Consensus       452 ~~  453 (642)
T 1e07_A          452 HS  453 (642)
T ss_pred             Cc
Confidence            43

>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=98.98  E-value=4.1e-09  Score=54.46  Aligned_cols=75  Identities=17%  Similarity=0.245  Sum_probs=51.3

Q ss_pred             CceeeecCCCcEEEEEEeeecc-cc-eeEEeeccc--ee--Ee---------cccceEEEEeccccceEEEEEEEccCCC
Q psy4613           8 NQLVGAPIDTDVTLECYVEAYP-KS-INYWVRDQG--DM--VI---------SSERYEVESISRSIFDFKMRLTIKKITK   72 (96)
Q Consensus         8 ~~~~~~~~g~~~~l~c~~~~~~-~~-~~~w~~~~~--~~--~~---------~~~~~~~~~~~~~~~~~~~~l~i~~~~~   72 (96)
                      +..+.+..|+.+.|.|.+.+.+ .+ .+.|+++..  ..  ..         ...++.....     .....|.|.+++.
T Consensus        26 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-----~~~~~L~I~~v~~  100 (234)
T 2j6e_L           26 PPSASGTPGQRVTISCSGSSSNIGSNYVYWYQQLPGTAPKLLIYRNNQRPSGVPDRFSGSKS-----GTSASLAISGLRS  100 (234)
T ss_dssp             CSCCCBCTTCEEEEEEECCTTTTTTSCCEEEEECSSSCCEEEEBTTTBCCSSSCTTEEEEEE-----TTEEEEEEESCCS
T ss_pred             CCcEEeeCCCcEEEEEEecCCCCCCCeEEEEEecCCCCcEEEEECccccCCCccccEEEEec-----CCeEEEEECCCCH
Confidence            4456688999999999998754 34 699987531  11  10         0123332210     0235799999999


Q ss_pred             CCCeeEEEEEecCCC
Q psy4613          73 YDLGSYKCIAKNSLG   87 (96)
Q Consensus        73 ~d~g~y~c~~~~~~g   87 (96)
                      .|.|.|.|.+.+..+
T Consensus       101 ~D~G~Y~C~~~~~~~  115 (234)
T 2j6e_L          101 EDEADYYCATWDDSL  115 (234)
T ss_dssp             TTCSEEEEEEEETTT
T ss_pred             HHCEEEEEEEEcCCc
Confidence            999999999998766

>1nko_A Sialic acid binding IG-like lectin 7; immunoglobulin, siglec7, immune system; 1.45A {Homo sapiens} SCOP: b.1.1.1 PDB: 2g5r_A* 1o7v_A* 2df3_A* 1o7s_A* 2hrl_A*

Probab=98.98  E-value=6.7e-09  Score=49.63  Aligned_cols=77  Identities=18%  Similarity=0.259  Sum_probs=49.6

Q ss_pred             ecCceeeecCCCcEEEEEEeee-------cccceeEEeeccce-----eEec-----------ccceEEEEeccccceEE
Q psy4613           6 VPNQLVGAPIDTDVTLECYVEA-------YPKSINYWVRDQGD-----MVIS-----------SERYEVESISRSIFDFK   62 (96)
Q Consensus         6 ~~~~~~~~~~g~~~~l~c~~~~-------~~~~~~~w~~~~~~-----~~~~-----------~~~~~~~~~~~~~~~~~   62 (96)
                      ..+..+.+..|+.+.|.|.+..       .....+.|++....     +...           ..|+.+.....   ...
T Consensus        11 q~p~~v~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~i~~~~~~~~~~~~~~~R~~~~~~~~---~~~   87 (132)
T 1nko_A           11 TMQSSVTVQEGMCVHVRCSFSYPVDSDTDSDPVHGYWFRAGNDISWKAPVATNNPAWAVQEETRDRFHLLGDPQ---TKN   87 (132)
T ss_dssp             EECSEEEEETTCCEEECEEEECCCCTTTTTSCCEEEEEEC-----CCSCSEESCTTCCCCGGGTTTEEECSCGG---GTB
T ss_pred             eCCCEEEEcCCCeEEEEccccCCCccccCCCccEEEEEECCCCCCcccEEEeCCCccccccccCccEEEeCCCC---CCc
Confidence            3456678999999999999873       34568999986431     1111           12222211100   012


Q ss_pred             EEEEEccCCCCCCeeEEEEEecC
Q psy4613          63 MRLTIKKITKYDLGSYKCIAKNS   85 (96)
Q Consensus        63 ~~l~i~~~~~~d~g~y~c~~~~~   85 (96)
                      ..|.|.+++..|+|.|.|.+.+.
T Consensus        88 ~sL~I~~v~~~DsG~Y~C~v~~~  110 (132)
T 1nko_A           88 CTLSIRDARMSDAGRYFFRMEKG  110 (132)
T ss_dssp             CCEEECSCCGGGCEEEEEEEEET
T ss_pred             eEEEEcccCcccCeeEEEEEEcC
Confidence            47999999999999999998764

>3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex, immunoglobulin fold, immune receptor, membr immune system; HET: NAG; 2.55A {Homo sapiens}

Probab=98.98  E-value=1.3e-08  Score=53.75  Aligned_cols=76  Identities=17%  Similarity=0.198  Sum_probs=51.3

Q ss_pred             EEecCceeeecCCCcEEEEEEeeecccceeEEeecc--cee--Ee-cc------------cceEEEEeccccceEEEEEE
Q psy4613           4 IHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQ--GDM--VI-SS------------ERYEVESISRSIFDFKMRLT   66 (96)
Q Consensus         4 ~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~--~~~--~~-~~------------~~~~~~~~~~~~~~~~~~l~   66 (96)
                      +..++..+.+..|+.+.|.|.+. .+.+.+.|++..  ...  .. ..            .++.+...    ......|.
T Consensus        29 v~~~p~~v~v~~G~~v~L~C~~~-~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~----~~~~~sL~  103 (268)
T 3pl6_D           29 VSQTPSNKVTEKGKYVELRCDPI-SGHTALYWYRQSLGQGPEFLIYFQGTGAADDSGLPNDRFFAVRP----EGSVSTLK  103 (268)
T ss_dssp             CBCCCSEEEEETTCCEEEEEBCB-TTCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECT----TSSSEEEE
T ss_pred             eEeCCCEEEecCCCCEEEEEEeC-CCCceEEEEEECCCCCcEEEEEECCCCccccCCCccCcEEEEec----CCCEEEEE
Confidence            33455667889999999999976 477789998831  111  00 00            23332211    01246799


Q ss_pred             EccCCCCCCeeEEEEEec
Q psy4613          67 IKKITKYDLGSYKCIAKN   84 (96)
Q Consensus        67 i~~~~~~d~g~y~c~~~~   84 (96)
                      |.+++..|.|.|.|.+.+
T Consensus       104 I~~v~~~D~G~Y~C~~~~  121 (268)
T 3pl6_D          104 IQRTERGDSAVYLCATSA  121 (268)
T ss_dssp             ECSCCGGGCEEEEEEEES
T ss_pred             ECCCCcccCEEEEEEEec
Confidence            999999999999999987

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A

Probab=98.98  E-value=8.6e-08  Score=51.77  Aligned_cols=83  Identities=13%  Similarity=0.167  Sum_probs=55.3

Q ss_pred             ceeeecCC---CcEEEEEE-eeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEec
Q psy4613           9 QLVGAPID---TDVTLECY-VEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKN   84 (96)
Q Consensus         9 ~~~~~~~g---~~~~l~c~-~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~   84 (96)
                      ..+.+..|   ..+.|.|. ..+.|.+.+.|+++.......    ...............|.|..+...|.|.|.|.+.+
T Consensus       140 ~~~~~~~g~~~~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~----~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n  215 (331)
T 3u83_A          140 AVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEY----QEIRNPNGTVTVISRYRLVPSREAHQQSLACIVNY  215 (331)
T ss_dssp             SCEEECTTCCCCEEEEEEEEEEEBSCCEEEEEESSCCEEEE----EEEECTTSCEEEEEEEEECCCGGGTTCEEEEEEEE
T ss_pred             CceeecCCCccceEEEEEEecCCcCCceEEEEcCCCCcccc----ceeECCCCcEEEEEEEEEEeccccCCCEEEEEEec
Confidence            44556667   77999998 788899999999853221100    00011111222346789999999999999999999


Q ss_pred             CCCceEEEEEe
Q psy4613          85 SLGEVESSIRL   95 (96)
Q Consensus        85 ~~g~~~~~~~l   95 (96)
                      ..|.....+.|
T Consensus       216 ~~~~~~~~~~l  226 (331)
T 3u83_A          216 HMDRFKESLTL  226 (331)
T ss_dssp             TTEEEEEEEEC
T ss_pred             CCCcceeeEEE
Confidence            88776555443

>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A

Probab=98.98  E-value=2.4e-08  Score=52.34  Aligned_cols=79  Identities=13%  Similarity=0.154  Sum_probs=52.0

Q ss_pred             ecCceeeecCCCcEEEEEEeeecc--cceeEEeecc--cee--Ee--------------cccceEEEEeccccceEEEEE
Q psy4613           6 VPNQLVGAPIDTDVTLECYVEAYP--KSINYWVRDQ--GDM--VI--------------SSERYEVESISRSIFDFKMRL   65 (96)
Q Consensus         6 ~~~~~~~~~~g~~~~l~c~~~~~~--~~~~~w~~~~--~~~--~~--------------~~~~~~~~~~~~~~~~~~~~l   65 (96)
                      ..+..+.+..|+.+.|.|.+.+.+  .+.+.|++..  ...  ..              ...++.......   .....|
T Consensus         6 ~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~---~~~~~L   82 (253)
T 3uzq_A            6 EQSGAELVKPGASVRLSCTASGFNIKDTYMSWVKQRPEQGLEWIGRIDPANGDTKYDPKFQGKATITADTS---SNTAYL   82 (253)
T ss_dssp             EECCCEEECTTCCEEEEEEECSSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETT---TTEEEE
T ss_pred             ecCCCeeecCCCcEEEEEEeeCCcccCceEEEEEeCCCCCCEEEEEEccCCCcceeCCcCCCcEEEEeecC---CCeEEE
Confidence            344567789999999999988743  6789998832  111  10              012333222110   013569


Q ss_pred             EEccCCCCCCeeEEEEEecCCC
Q psy4613          66 TIKKITKYDLGSYKCIAKNSLG   87 (96)
Q Consensus        66 ~i~~~~~~d~g~y~c~~~~~~g   87 (96)
                      .|.+++..|+|.|.|.+.+..+
T Consensus        83 ~I~~v~~~DsG~Y~C~~~~~~~  104 (253)
T 3uzq_A           83 HLSSLTSGDTAVYYCSRGWEGF  104 (253)
T ss_dssp             EECSCCGGGCEEEEEEECSSSC
T ss_pred             EeCCCCcccCEEEEEEEeeCCc
Confidence            9999999999999999988543

>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane, immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B* 3q5t_A

Probab=98.98  E-value=7.2e-09  Score=53.86  Aligned_cols=76  Identities=13%  Similarity=0.239  Sum_probs=51.9

Q ss_pred             eEEecCceeeecCCCcEEEEEEeeecccceeEEeeccc----eeE----------e--cccceEEEEeccccceEEEEEE
Q psy4613           3 VIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQG----DMV----------I--SSERYEVESISRSIFDFKMRLT   66 (96)
Q Consensus         3 ~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~----~~~----------~--~~~~~~~~~~~~~~~~~~~~l~   66 (96)
                      .+..++..+.+..|+.+.|.|.+.+ +.+.+.|++...    ...          .  ...++......    .....|.
T Consensus         4 ~v~~~p~~v~v~~G~~v~L~C~~~~-~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~----~~~~sL~   78 (240)
T 3q5y_A            4 GVVQSPRHIIKEKGGRSVLTCIPIS-GHSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQFD----DYHSEMN   78 (240)
T ss_dssp             CCEEECSEEEEETTCCEEEEEECCT-TCCEEEEEEECTTSCCEEEEEEETTEEEEECSCCTTEEEEECT----TSCEEEE
T ss_pred             ccccCcceeeecCCCcEEEEEEeCC-CCceEEEEEECCCCCCEEEEEEcCCccccCcccCCeEEEEeCC----CCEEEEE
Confidence            3455667788999999999999876 777999998321    000          0  01233322210    1235799


Q ss_pred             EccCCCCCCeeEEEEEe
Q psy4613          67 IKKITKYDLGSYKCIAK   83 (96)
Q Consensus        67 i~~~~~~d~g~y~c~~~   83 (96)
                      |.+++..|.|.|.|.+.
T Consensus        79 I~~v~~~D~G~Y~C~~~   95 (240)
T 3q5y_A           79 MSALELEDSAMYFCASS   95 (240)
T ss_dssp             ECSCCGGGCEEEEEEEE
T ss_pred             ECcCChhHCEEEEEEEc
Confidence            99999999999999997

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B

Probab=98.97  E-value=1.3e-09  Score=54.30  Aligned_cols=76  Identities=17%  Similarity=0.191  Sum_probs=50.3

Q ss_pred             eeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEecc--ccc---eEEEEEEEccCCCCCCeeEEEEEec
Q psy4613          10 LVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISR--SIF---DFKMRLTIKKITKYDLGSYKCIAKN   84 (96)
Q Consensus        10 ~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~--~~~---~~~~~l~i~~~~~~d~g~y~c~~~~   84 (96)
                      .+.+..|++++|.|.+. .+.+.+.|++.+..+...... .......  ...   .....|.|.+++..|+|.|.|.+.+
T Consensus         4 ~v~~~~G~~VtL~c~~~-~~~~~i~W~~~~~~i~~~~~~-~~~~~~~~~~R~~~~~~~~sL~I~~v~~~DsG~Y~C~~~n   81 (171)
T 1ccz_A            4 QIYGVVYGNVTFHVPSN-VPLKEVLWKKQKDKVAELENS-EFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPN   81 (171)
T ss_dssp             EEEEETTCCEEECCCCS-SCCSCEEEEETTEEEEEEETT-EEEECGGGTTSEEECTTTCCEEECSCCGGGCEEEEEECTT
T ss_pred             EEEEEcCCCEEEcCCCC-CCcceEEEEeCCcEEEEEcCC-CcccccccCCcEEEeCCCCeEEECCCChhhCceEEEEEeC
Confidence            45678999999999984 478899999876533211100 0000000  000   0125699999999999999999988


Q ss_pred             CCC
Q psy4613          85 SLG   87 (96)
Q Consensus        85 ~~g   87 (96)
                      ..|
T Consensus        82 ~~~   84 (171)
T 1ccz_A           82 ITD   84 (171)
T ss_dssp             CCS
T ss_pred             CCC
Confidence            777

>1kxv_C Camelid VHH domain CAB10; beta 8 alpha 8, beta barrel, hydrolase, immune system; 1.60A {Camelus dromedarius} SCOP: b.1.1.1

Probab=98.97  E-value=6.1e-08  Score=45.68  Aligned_cols=78  Identities=15%  Similarity=0.205  Sum_probs=51.0

Q ss_pred             EEecCceeeecCCCcEEEEEEeeecc--cceeEEeeccc----eeE-e-c-----------ccceEEEEeccccceEEEE
Q psy4613           4 IHVPNQLVGAPIDTDVTLECYVEAYP--KSINYWVRDQG----DMV-I-S-----------SERYEVESISRSIFDFKMR   64 (96)
Q Consensus         4 ~~~~~~~~~~~~g~~~~l~c~~~~~~--~~~~~w~~~~~----~~~-~-~-----------~~~~~~~~~~~~~~~~~~~   64 (96)
                      +..++ .+.+..|++++|.|.+.+.+  ...+.|++...    ..+ . .           ..++.+....   ......
T Consensus         4 l~q~~-~~~~~~G~~vtL~C~~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~---~~~~~~   79 (121)
T 1kxv_C            4 LVESG-GGTVPAGGSLRLSCAASGNTLCTYDMSWYRRAPGKGRDFVSGIDNDGTTTYVDSVAGRFTISQGN---AKNTAY   79 (121)
T ss_dssp             EEEEC-CEEECTTCCEEEEEEEESCTTCCEEEEEEEECTTSCEEEEEEECTTCCEEECGGGBTTEEEEECS---STTEEE
T ss_pred             EEcCC-CEEEcCCCcEEEEEEecCCCcCceEEEEEEeCCCCCCEEEEEEeCCCCeeeCcccCCcEEEEEEC---CCCEEE
Confidence            44444 56789999999999987543  46799987521    111 1 0           1122222110   012467


Q ss_pred             EEEccCCCCCCeeEEEEEecC
Q psy4613          65 LTIKKITKYDLGSYKCIAKNS   85 (96)
Q Consensus        65 l~i~~~~~~d~g~y~c~~~~~   85 (96)
                      |.|.+++.+|+|.|.|.+.+.
T Consensus        80 L~I~~~~~~Dsg~Y~C~~~~~  100 (121)
T 1kxv_C           80 LQMDSLKPDDTAMYYCKPSLR  100 (121)
T ss_dssp             EEECSCCGGGCEEEEEEEEES
T ss_pred             EEECCCCHHHCEEEEEEEEec
Confidence            999999999999999998864

>1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=98.97  E-value=1.9e-08  Score=52.23  Aligned_cols=74  Identities=14%  Similarity=0.198  Sum_probs=49.2

Q ss_pred             CceeeecCCCcEEEEEEeeeccc--ceeEEeecc--ceeE-----e-----------cccceEEEEeccccceEEEEEEE
Q psy4613           8 NQLVGAPIDTDVTLECYVEAYPK--SINYWVRDQ--GDMV-----I-----------SSERYEVESISRSIFDFKMRLTI   67 (96)
Q Consensus         8 ~~~~~~~~g~~~~l~c~~~~~~~--~~~~w~~~~--~~~~-----~-----------~~~~~~~~~~~~~~~~~~~~l~i   67 (96)
                      +....+..|+.+.|.|.+.+.+.  +.+.|+++.  ....     .           ...++......   ......|.|
T Consensus       126 ~~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~---~~~~~~L~I  202 (240)
T 1moe_A          126 SGAELVEPGASVKLSCTASGFNIKDTYMHWVKQRPEQGLEWIGRIDPANGNSKYVPKFQGKATITADT---SSNTAYLQL  202 (240)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEET---TTTEEEEEE
T ss_pred             CCceEEeCCCcEEEEEEEcCccCCCCEEEEEEECCCCCcEEEEEEcccCCccccCccccccEEEEEcc---cCCEEEEEE
Confidence            34456788999999999998763  589999852  1110     0           01223222110   012357999


Q ss_pred             ccCCCCCCeeEEEEEec
Q psy4613          68 KKITKYDLGSYKCIAKN   84 (96)
Q Consensus        68 ~~~~~~d~g~y~c~~~~   84 (96)
                      .+++..|+|.|.|.+..
T Consensus       203 ~~v~~~D~G~Y~C~a~~  219 (240)
T 1moe_A          203 TSLTSEDTAVYYCAPFG  219 (240)
T ss_dssp             CSCCGGGCEEEEEEECS
T ss_pred             CcCCHHHCEEEEEEEEe
Confidence            99999999999999984

>2h32_A Immunoglobulin IOTA chain; beta sheets, V and C-type IG folds, immune system; 2.70A {Homo sapiens}

Probab=98.97  E-value=9.8e-08  Score=45.38  Aligned_cols=80  Identities=16%  Similarity=0.282  Sum_probs=52.1

Q ss_pred             EEecCceeeecCCCcEEEEEEeeec---ccceeEEeeccc----eeE-e-c-----------ccceEEEEeccccceEEE
Q psy4613           4 IHVPNQLVGAPIDTDVTLECYVEAY---PKSINYWVRDQG----DMV-I-S-----------SERYEVESISRSIFDFKM   63 (96)
Q Consensus         4 ~~~~~~~~~~~~g~~~~l~c~~~~~---~~~~~~w~~~~~----~~~-~-~-----------~~~~~~~~~~~~~~~~~~   63 (96)
                      +..+ ..+.+..|++++|.|.+...   ....+.|++...    ..+ . .           ..++.+....   .....
T Consensus         4 ~~qp-~~v~v~~G~~vtL~C~~s~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~Rf~~~~~~---~~~~~   79 (126)
T 2h32_A            4 LHQP-PAMSSALGTTIRLTCTLRNDHDIGVYSVYWYQQRPGHPPRFLLRYFSQSDKSQGPQVPPRFSGSKDV---ARNRG   79 (126)
T ss_dssp             EECC-SEEEEETTCCEEEEEEECTTSCGGGCEEEEEEECTTSCCEEEEEEEETTEEEECTTCCTTEEEEEEG---GGTEE
T ss_pred             eECC-CCEEECCCCCEEEEEEecCCCccccceEEEEEECCCCCCEEEEEEECCCCEEeCCCCCCCEEEEEeC---CCCeE
Confidence            4444 46778999999999998764   245799987531    111 1 0           1122222111   11235


Q ss_pred             EEEEccCCCCCCeeEEEEEecCCC
Q psy4613          64 RLTIKKITKYDLGSYKCIAKNSLG   87 (96)
Q Consensus        64 ~l~i~~~~~~d~g~y~c~~~~~~g   87 (96)
                      .|.|.+++..|+|.|.|.+.+..+
T Consensus        80 sL~I~~~~~~DsG~Y~C~~~~~~~  103 (126)
T 2h32_A           80 YLSISELQPEDEAMYYCAMGARSS  103 (126)
T ss_dssp             EEEECSCCGGGCEEEEEEEECSCC
T ss_pred             EEEECCCChhHCEEEEEEEEcCCC
Confidence            799999999999999999987654

>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L

Probab=98.97  E-value=4.7e-10  Score=58.76  Aligned_cols=73  Identities=18%  Similarity=0.308  Sum_probs=47.8

Q ss_pred             CCCcEEEEEEeeec-ccc-eeEEeeccceeEecccceEE--EEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCc
Q psy4613          15 IDTDVTLECYVEAY-PKS-INYWVRDQGDMVISSERYEV--ESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGE   88 (96)
Q Consensus        15 ~g~~~~l~c~~~~~-~~~-~~~w~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~   88 (96)
                      .|+.+.|.|.+.+. |.+ .+.|++++..+. .......  .......+.....|.|..+...|.|.|.|.+.+....
T Consensus       164 ~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~-~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~  240 (252)
T 3bkj_L          164 TSGGASVVCFLNNFYPKDINVKWKIDGSERQ-NGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTST  240 (252)
T ss_dssp             HHTEEEEEEEEEEEBSSCCEEEEEETTEEEC-SSEEEEECCCCTTTCCEEEEEEEEEEHHHHHHCCEEEEEEECTTCS
T ss_pred             CCCcEEEEEEEeeEeCCCcEEEEEECCeecC-CCeeeecCcccCCCCCEEEEEEEEEcchhccCCCeEEEEEEeCCCC
Confidence            57899999999884 443 699999865442 1100000  0011112224567899999889999999999987554

>2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV, immune system; 2.10A {Mus musculus} PDB: 3h3b_C

Probab=98.97  E-value=3.6e-08  Score=52.15  Aligned_cols=72  Identities=14%  Similarity=0.258  Sum_probs=49.2

Q ss_pred             eeecCCCcEEEEEEeeeccc--ceeEEeecc--ce--eEe---c-----------ccceEEEEeccccceEEEEEEEccC
Q psy4613          11 VGAPIDTDVTLECYVEAYPK--SINYWVRDQ--GD--MVI---S-----------SERYEVESISRSIFDFKMRLTIKKI   70 (96)
Q Consensus        11 ~~~~~g~~~~l~c~~~~~~~--~~~~w~~~~--~~--~~~---~-----------~~~~~~~~~~~~~~~~~~~l~i~~~   70 (96)
                      ..+..|+.+.|.|.+.+.+.  +.+.|+++.  ..  .+.   .           ..++.+....   ......|.|.++
T Consensus       148 ~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~---~~~~~~L~I~~v  224 (264)
T 2gjj_A          148 EVVKTGASVKISCKASGYSFTGYFINWVKKNSGKSPEWIGHISSSYATSTYNQKFKNKAAFTVDT---SSSTAFMQLNSL  224 (264)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCCEEEEEEETTTCCEEECGGGTTTEEEEEET---TTTEEEEEECSC
T ss_pred             EEEcCCCcEEEEEEEeCCccCCeEEEEEEECCCCCcEEEEEEeccCcccccCcccCCceEEEEcC---CCCEEEEEECcC
Confidence            35789999999999988763  789999863  11  111   0           1223222110   012468999999


Q ss_pred             CCCCCeeEEEEEecC
Q psy4613          71 TKYDLGSYKCIAKNS   85 (96)
Q Consensus        71 ~~~d~g~y~c~~~~~   85 (96)
                      +..|+|.|.|.+.+.
T Consensus       225 ~~~DsG~Y~C~a~n~  239 (264)
T 2gjj_A          225 TSEDSADYYCVRSGN  239 (264)
T ss_dssp             CGGGCEEEEEEEECS
T ss_pred             CcccCEEEEEEEecC
Confidence            999999999999984

>2xqy_G A13-D6.3 monoclonal antibody, envelope glycoprotein H; immune system-viral protein complex, envelope protein; HET: NAG; 2.05A {Mus musculus}

Probab=98.97  E-value=5.3e-08  Score=51.56  Aligned_cols=76  Identities=12%  Similarity=0.220  Sum_probs=52.1

Q ss_pred             CceeeecCCCcEEEEEEeeecc--cceeEEeecc--cee--Ee--c------------ccceEEEEeccccceEEEEEEE
Q psy4613           8 NQLVGAPIDTDVTLECYVEAYP--KSINYWVRDQ--GDM--VI--S------------SERYEVESISRSIFDFKMRLTI   67 (96)
Q Consensus         8 ~~~~~~~~g~~~~l~c~~~~~~--~~~~~w~~~~--~~~--~~--~------------~~~~~~~~~~~~~~~~~~~l~i   67 (96)
                      +..+.+..|+.+.|.|.+.+.+  .+.+.|++..  ..+  +.  .            ..++.+.....   .....|.|
T Consensus        13 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~---~~~~sL~I   89 (261)
T 2xqy_G           13 PGAELVKPGASVKMSCKASGYSFTSYWMNWVKQRPGRGLEWIGRIDPSDNETHYNQDFKDKVTLTVDKS---SSTVYIQL   89 (261)
T ss_dssp             CSEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGG---GTEEEEEE
T ss_pred             CCCEEEcCCCCEEEEEEeCCcccCCceEEEEEeCCCCCcEEEEEEecCCCceeeCCccCCcEEEEecCC---CCEEEEEE
Confidence            4466789999999999998765  5789999763  111  10  0            12333322110   02367999


Q ss_pred             ccCCCCCCeeEEEEEecCC
Q psy4613          68 KKITKYDLGSYKCIAKNSL   86 (96)
Q Consensus        68 ~~~~~~d~g~y~c~~~~~~   86 (96)
                      .+++..|+|.|.|.+.+..
T Consensus        90 ~~v~~~DsG~Y~C~~~~~~  108 (261)
T 2xqy_G           90 SSLTSEDSAVYYCGRLGYV  108 (261)
T ss_dssp             CSCCGGGCEEEEEEEECTT
T ss_pred             cCCCcccCeEEEEEEecCC
Confidence            9999999999999998853

>1mju_H Immunoglobulin MS6-12; catalytic antibody, ester hydrolysis, esterolytic, FAB, immune system; 1.22A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mjj_B 1mie_H 1mj7_H* 1mj8_H 1mh5_B* 4aeh_H 2y5t_A 2vwe_E 2op4_H 2ntf_H 3loh_C 1e4x_H 2vl5_A 1e4x_I 1e4w_H 3opz_H 3oz9_H 1plg_H 1hi6_B 1cfn_B ...

Probab=98.97  E-value=2.8e-08  Score=51.43  Aligned_cols=75  Identities=15%  Similarity=0.228  Sum_probs=51.4

Q ss_pred             CceeeecCCCcEEEEEEeeecc--cceeEEeecc--cee--Ee--c------------ccceEEEEeccccceEEEEEEE
Q psy4613           8 NQLVGAPIDTDVTLECYVEAYP--KSINYWVRDQ--GDM--VI--S------------SERYEVESISRSIFDFKMRLTI   67 (96)
Q Consensus         8 ~~~~~~~~g~~~~l~c~~~~~~--~~~~~w~~~~--~~~--~~--~------------~~~~~~~~~~~~~~~~~~~l~i   67 (96)
                      +..+.+..|+.+.|.|.+.+.+  .+.+.|++..  ...  +.  .            ..++.+.....   .....|.|
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~---~~~~sL~I   83 (227)
T 1mju_H            7 PGAELVKPGASVKLSCKASGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTS---SSTAYMQL   83 (227)
T ss_dssp             CSEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETT---TTEEEEEE
T ss_pred             CCCeEEcCCCCEEEEEEecCCccccceEEEEEeCCCCCcEEEEEEeccCCceeeCCccCCcEEEEEeCC---CCeEEEEE
Confidence            3456789999999999998765  6789999853  111  10  0            12333221110   12467999


Q ss_pred             ccCCCCCCeeEEEEEecC
Q psy4613          68 KKITKYDLGSYKCIAKNS   85 (96)
Q Consensus        68 ~~~~~~d~g~y~c~~~~~   85 (96)
                      .+++..|.|.|.|.+.+.
T Consensus        84 ~~v~~~D~G~Y~C~~~~~  101 (227)
T 1mju_H           84 SSLTSDDSAVYYCANKLG  101 (227)
T ss_dssp             CSCCGGGCEEEEEEEEET
T ss_pred             CCCCcccCEEEEEEECCC
Confidence            999999999999999875

>3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D

Probab=98.97  E-value=2e-08  Score=52.69  Aligned_cols=73  Identities=15%  Similarity=0.256  Sum_probs=49.4

Q ss_pred             eeeecCCCcEEEEEEeeecc--cceeEEeecc--cee--Ee--------------cccceEEEEeccccceEEEEEEEcc
Q psy4613          10 LVGAPIDTDVTLECYVEAYP--KSINYWVRDQ--GDM--VI--------------SSERYEVESISRSIFDFKMRLTIKK   69 (96)
Q Consensus        10 ~~~~~~g~~~~l~c~~~~~~--~~~~~w~~~~--~~~--~~--------------~~~~~~~~~~~~~~~~~~~~l~i~~   69 (96)
                      ...+..|+.+.|.|.+.+.+  .+.+.|++..  ...  ..              ...++.+.....   .....|.|.+
T Consensus        11 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~---~~~~~L~I~~   87 (256)
T 3umt_A           11 LELVKPGASVKISCKTSGYTFTEYTMHWVKQSHGKSLEWIGGINPNNGGTSYNQKFKGKAILTVDKS---SSTAYLELRS   87 (256)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGG---GTEEEEEECS
T ss_pred             ceEEcCCCCEEEEEEEecccccccEEEEEEECCCCCcEEEEEEeccCCcccccccccceEEEEEecC---CCEEEEEECC
Confidence            45589999999999988755  6789998742  111  10              012333222110   1235699999


Q ss_pred             CCCCCCeeEEEEEecC
Q psy4613          70 ITKYDLGSYKCIAKNS   85 (96)
Q Consensus        70 ~~~~d~g~y~c~~~~~   85 (96)
                      ++..|+|.|.|.+.+.
T Consensus        88 v~~~DsG~Y~C~~~~~  103 (256)
T 3umt_A           88 LTSEDSAVYYCARDDR  103 (256)
T ss_dssp             CCGGGCEEEEEEECCS
T ss_pred             CCcccCEEEEEEEccC
Confidence            9999999999999886

>3b9v_A Heavy chain variable domain; antibody engineering, phage display, immune system; 1.80A {Homo sapiens} PDB: 1fvc_B 3p9w_B 1fgv_H 2vh5_H*

Probab=98.96  E-value=6e-08  Score=45.60  Aligned_cols=78  Identities=14%  Similarity=0.206  Sum_probs=51.2

Q ss_pred             EEecCceeeecCCCcEEEEEEeeecc--cceeEEeeccc----eeEe--c------------ccceEEEEeccccceEEE
Q psy4613           4 IHVPNQLVGAPIDTDVTLECYVEAYP--KSINYWVRDQG----DMVI--S------------SERYEVESISRSIFDFKM   63 (96)
Q Consensus         4 ~~~~~~~~~~~~g~~~~l~c~~~~~~--~~~~~w~~~~~----~~~~--~------------~~~~~~~~~~~~~~~~~~   63 (96)
                      +..++ .+.+..|++++|.|.+.+..  ...+.|++...    ..+.  .            ..++......   .....
T Consensus         4 v~qp~-~~~~~~G~~vtL~C~~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~---~~~~~   79 (120)
T 3b9v_A            4 LVESG-GGLVQPGGSLRLSCAASGFNIKDTYIGWVRRAPGKGEEWVASIYPTNGYTRYADSVKGRFTISADT---SKNTA   79 (120)
T ss_dssp             EEEEC-CEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTCCEEEEEEEETTTTEEEECTTTTTTEEEEEEG---GGTEE
T ss_pred             EECCC-CEEEeCCccEEEEEEeeCccccccEEEEEEECCCCCcEEEEEEecCCCceecCcccCCeEEEEEcC---CCCEE
Confidence            44443 56789999999999987533  56899987531    1111  0            1233332211   01235


Q ss_pred             EEEEccCCCCCCeeEEEEEecC
Q psy4613          64 RLTIKKITKYDLGSYKCIAKNS   85 (96)
Q Consensus        64 ~l~i~~~~~~d~g~y~c~~~~~   85 (96)
                      .|.|.+++.+|+|.|.|.+.+.
T Consensus        80 ~L~I~~~~~~Dsg~Y~C~~~~~  101 (120)
T 3b9v_A           80 YLQMNSLRAEDTAVYYCARWGG  101 (120)
T ss_dssp             EEEECSCCGGGCEEEEEEEECT
T ss_pred             EEEECCCCHHHCEEEEEEEEcC
Confidence            7999999999999999998865

>1n4x_H Immunoglobulin heavy chain variable region; immune system; 1.70A {Mus musculus} SCOP: b.1.1.1 PDB: 3iy4_B

Probab=98.96  E-value=7.1e-08  Score=45.36  Aligned_cols=78  Identities=15%  Similarity=0.247  Sum_probs=51.2

Q ss_pred             EEecCceeeecCCCcEEEEEEeeecc--cceeEEeeccc----eeEe--c------------ccceEEEEeccccceEEE
Q psy4613           4 IHVPNQLVGAPIDTDVTLECYVEAYP--KSINYWVRDQG----DMVI--S------------SERYEVESISRSIFDFKM   63 (96)
Q Consensus         4 ~~~~~~~~~~~~g~~~~l~c~~~~~~--~~~~~w~~~~~----~~~~--~------------~~~~~~~~~~~~~~~~~~   63 (96)
                      +..++ .+.+..|++++|.|.+.+..  ...+.|++...    ..+.  .            ..++......   .....
T Consensus         4 v~qp~-~~~~~~G~~vtL~C~~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~---~~~~~   79 (120)
T 1n4x_H            4 LQQSG-PELKKPGETVKISCKATNYAFTDYSMHWVKQAPGGDLKYVGWINTETDEPTFADDFKGRFAFSLDT---STSTA   79 (120)
T ss_dssp             EEECC-CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTEEEEEEG---GGTEE
T ss_pred             EECCC-CEEEcCCCeEEEEEEecCcccCCcEEEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEEEeC---CCCEE
Confidence            44444 46789999999999987533  45799987531    1111  0            1233332211   01246


Q ss_pred             EEEEccCCCCCCeeEEEEEecC
Q psy4613          64 RLTIKKITKYDLGSYKCIAKNS   85 (96)
Q Consensus        64 ~l~i~~~~~~d~g~y~c~~~~~   85 (96)
                      .|.|.+++..|+|.|.|.+.+.
T Consensus        80 ~L~I~~~~~~DsG~Y~C~~~~~  101 (120)
T 1n4x_H           80 FLQINNLKNEDTATYFCVRDRH  101 (120)
T ss_dssp             EEEECSCCGGGCEEEEEEEESS
T ss_pred             EEEECCCCHHHCEEEEEEEEcc
Confidence            7999999999999999999865

>3bae_H WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} SCOP: b.1.1.2 PDB: 3bkc_H 3bkj_H 3bkm_H 3mck_H 2r0w_H* 2iqa_H 2iq9_H 1ggi_H 1ggb_H 1ggc_H 3eys_H* 2ipt_H 2ipu_H 3eyu_H* 2r0z_H* 3rkd_H 1r0a_H* 1n5y_H* 1n6q_H* 1t03_H* ...

Probab=98.96  E-value=1.4e-08  Score=52.56  Aligned_cols=76  Identities=17%  Similarity=0.260  Sum_probs=48.9

Q ss_pred             ecCCCcEEEEEEeeec-ccc-eeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCceE
Q psy4613          13 APIDTDVTLECYVEAY-PKS-INYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVE   90 (96)
Q Consensus        13 ~~~g~~~~l~c~~~~~-~~~-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~~   90 (96)
                      +..|..+.|.|.+.+. |.+ .+.|++++...... ...... . ...+...+.|.|......| |.|.|.+.|..+...
T Consensus       142 ~~~g~~~~l~C~~~g~~P~p~~v~W~~~~~~~~~~-~~~~~~-~-~~~~~~~s~L~i~~~~~d~-g~YtC~~~n~~~~~~  217 (228)
T 3bae_H          142 DTTGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVH-TFPAVL-Q-SDLYTLSSSVTVTSSTWPS-ESITCNVAHPASSTK  217 (228)
T ss_dssp             --CCSEEEEEEEEEEEBSSCCEEEEGGGTCCTTEE-EEEEEE-E-TTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTEE
T ss_pred             ccCCCCEEEEEEEccEeCCCEEEEEeeCCcccCce-EcCcee-C-CCcEEEEEEEEEEhhhcCC-CcEEEEEEECCCCCC
Confidence            4578999999999886 777 89999875432100 000111 1 1222245678888887766 999999999887654


Q ss_pred             EE
Q psy4613          91 SS   92 (96)
Q Consensus        91 ~~   92 (96)
                      ..
T Consensus       218 ~~  219 (228)
T 3bae_H          218 VD  219 (228)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>1lp9_E T-cell receptor alpha chain; immunoregulatory complex, class I MHC:TCR CO-crystal, immune; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 2j8u_E 2jcc_E 2uwe_E 1nfd_A*

Probab=98.96  E-value=6.8e-09  Score=52.81  Aligned_cols=79  Identities=14%  Similarity=0.165  Sum_probs=54.0

Q ss_pred             eEEecCceeeecCCCcEEEEEEeeecccceeEEeeccc----e-eEec--------ccceEEEEeccccceEEEEEEEcc
Q psy4613           3 VIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQG----D-MVIS--------SERYEVESISRSIFDFKMRLTIKK   69 (96)
Q Consensus         3 ~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~----~-~~~~--------~~~~~~~~~~~~~~~~~~~l~i~~   69 (96)
                      .+...+..+.+..|+.+.|.|.+.+.....+.|++...    . +...        ..++......   ......|.|.+
T Consensus         3 ~v~Q~p~~v~v~~G~~v~L~C~~s~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~Rfs~~~~~---~~~~~sL~I~~   79 (194)
T 1lp9_E            3 SVTQTEGLVTLTEGLPVMLNCTYQSTYSPFLFWYVQHLNEAPKLLLKSFTDNKRPEHQGFHATLHK---SSSSFHLQKSS   79 (194)
T ss_dssp             EEEECCSEEEEETTSCEEECEEEECSSSCCEEEEEECTTSCCEEEEESCSSTTCCCCSSCEECCBG---GGTBCCEEESS
T ss_pred             ccEecCCEEEEecCCCEEEEEEeCCCCCceEEEEEeCCCCCeEEEEEEcCCCCcccCCCeEEEecC---CCCEEEEEEcc
Confidence            45666777889999999999998876667899987531    1 1111        1222221100   00125799999


Q ss_pred             CCCCCCeeEEEEEec
Q psy4613          70 ITKYDLGSYKCIAKN   84 (96)
Q Consensus        70 ~~~~d~g~y~c~~~~   84 (96)
                      ++..|+|.|.|.+.+
T Consensus        80 ~~~~Dsg~Y~C~~~~   94 (194)
T 1lp9_E           80 AQLSDSALYYCALFL   94 (194)
T ss_dssp             CCGGGCEEEEEEEEE
T ss_pred             cCcccCeeEEEEEec
Confidence            999999999999876

>2q86_A Valpha14 TCR; INKT cells, TCR, glycolipid recognition, innate immunity, IM system; HET: NAG BMA MAN FUC; 1.85A {Mus musculus} PDB: 3quy_C* 3o9w_C* 3qux_C* 3o8x_C* 3quz_C* 3rtq_C* 3rzc_C* 3ta3_C* 3tvm_C* 3qi9_C* 3ard_C* 3are_C* 3arf_C* 3arg_C* 3he6_C* 3he7_C* 3arb_C* 3scm_C* 3sda_C* 3sdc_C* ...

Probab=98.96  E-value=2.2e-08  Score=52.17  Aligned_cols=79  Identities=15%  Similarity=0.243  Sum_probs=53.4

Q ss_pred             eEEecCceeeecCCCcEEEEEEeeecccceeEEeeccc----eeE-ec--------ccceEEEEeccccceEEEEEEEcc
Q psy4613           3 VIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQG----DMV-IS--------SERYEVESISRSIFDFKMRLTIKK   69 (96)
Q Consensus         3 ~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~----~~~-~~--------~~~~~~~~~~~~~~~~~~~l~i~~   69 (96)
                      .+...+..+.+..|+++.|.|.+.+.....+.|++...    ..+ ..        ..++......   ......|.|.+
T Consensus         3 ~v~Q~p~~v~v~~G~svtL~C~~s~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~Rfs~~~~~---~~~~~sL~I~~   79 (229)
T 2q86_A            3 QVEQSPQSLVVRQGENCVLQCNYSVTPDNHLRWYKQDTGKGLVLLTVLVDQKDKTSNGRYSATLDK---DAKHSTLHITA   79 (229)
T ss_dssp             SEEEECSEEEEETTCCEEEEEEECCSCCSCEEEEEECTTCCEEEEEEECSSEEEEEETTEEEEEET---TTTEEEEEECS
T ss_pred             ceEECCCEEEEecCCCEEEEEEECCCCCcEEEEEEECCCCCcEEEEEEcCCCCcccCCCEEEEEcC---CCCEEEEEEcc
Confidence            45566677889999999999998776666899997531    111 11        1222221110   01235799999


Q ss_pred             CCCCCCeeEEEEEec
Q psy4613          70 ITKYDLGSYKCIAKN   84 (96)
Q Consensus        70 ~~~~d~g~y~c~~~~   84 (96)
                      ++..|+|.|.|.+.+
T Consensus        80 ~~~~Dsg~Y~C~~~~   94 (229)
T 2q86_A           80 TLLDDTATYFCVVGD   94 (229)
T ss_dssp             CCGGGCEEEEEEESC
T ss_pred             cCcccCccEEEEEEe
Confidence            999999999999865

>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=98.96  E-value=2.4e-09  Score=60.08  Aligned_cols=76  Identities=13%  Similarity=0.115  Sum_probs=52.0

Q ss_pred             ecCCCcEEEEEEeeecc----cceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCc
Q psy4613          13 APIDTDVTLECYVEAYP----KSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGE   88 (96)
Q Consensus        13 ~~~g~~~~l~c~~~~~~----~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~   88 (96)
                      +..|+.+.|.|.+.+.+    .+.+.|++++..+...... .........+.....|.|..+...|.|.|.|.+.|..+.
T Consensus       252 ~~~G~~~~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~-~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~  330 (444)
T 1igt_B          252 LMISLSPIVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQ-THREDYNSTLRVVSALPIQHQDWMSGKEFKCKVNNKDLP  330 (444)
T ss_dssp             HCTTSCCEEEEEEEEECTTCCCCEEEEEETTEECSSTTCB-CCEEECSSSEEEEEEEECCHHHHHTTCEEEEEEECTTCS
T ss_pred             eecCCCcEEEEEEeecccCCCCeEEEEEECCccccCcccc-cceeCCCCcEEEEEEEEEcHHHhccCCcEEEEEEcCCCC
Confidence            47799999999999873    3589999987554211111 001111111224567999999999999999999998775


Q ss_pred             e
Q psy4613          89 V   89 (96)
Q Consensus        89 ~   89 (96)
                      .
T Consensus       331 ~  331 (444)
T 1igt_B          331 A  331 (444)
T ss_dssp             S
T ss_pred             C
Confidence            4

>3d9a_H Heavy chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_H 1gpo_H 3ks0_H* 1dqd_H 1ndm_B 1nak_H 1dqq_B 1dqm_H 1dqj_B 1nby_B 1nbz_B 1xgu_B 1ndg_B 1xgt_B 1xgp_B 1xgq_B 1xgr_B 1s5i_H 1f8t_H 1f90_H ...

Probab=98.96  E-value=1.5e-08  Score=51.64  Aligned_cols=74  Identities=15%  Similarity=0.238  Sum_probs=50.4

Q ss_pred             ceeeecCCCcEEEEEEeeecc--cceeEEeecc--ceeE---e------------cccceEEEEeccccceEEEEEEEcc
Q psy4613           9 QLVGAPIDTDVTLECYVEAYP--KSINYWVRDQ--GDMV---I------------SSERYEVESISRSIFDFKMRLTIKK   69 (96)
Q Consensus         9 ~~~~~~~g~~~~l~c~~~~~~--~~~~~w~~~~--~~~~---~------------~~~~~~~~~~~~~~~~~~~~l~i~~   69 (96)
                      ..+.+..|+.+.|.|.+.+.+  .+.+.|++..  ....   .            ...++.+.....   .....|.|.+
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~---~~~~~L~I~~   84 (210)
T 3d9a_H            8 GPSLVKPSQTLSLTCSVTGDSITSDYWSWIRKFPGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTS---KNQYYLDLNS   84 (210)
T ss_dssp             SCSEECTTSCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTSCEEECGGGTTTEEEEEEGG---GTEEEEEECS
T ss_pred             CCEEecCCCcEEEEEEEecccCCCCcEEEEEeCCCCCcEEEEEEcCCCCeEECcccCceEEEEecCC---CCEEEEEECC
Confidence            445789999999999998864  4789998752  1111   0            112333322110   0135899999


Q ss_pred             CCCCCCeeEEEEEecC
Q psy4613          70 ITKYDLGSYKCIAKNS   85 (96)
Q Consensus        70 ~~~~d~g~y~c~~~~~   85 (96)
                      ++..|.|.|.|.+.+.
T Consensus        85 v~~~D~G~Y~C~~~~~  100 (210)
T 3d9a_H           85 VTTEDTATYYCANWDG  100 (210)
T ss_dssp             CCGGGCEEEEEEETTS
T ss_pred             CCcccCEEEEEEEecC
Confidence            9999999999999875

>2or7_A T-cell immunoglobulin and mucin domain- containing protein 2; beta barrel, immunoglobulin fold, IGV domain, TIM, immune system; 1.50A {Mus musculus}

Probab=98.96  E-value=6.8e-09  Score=48.49  Aligned_cols=77  Identities=21%  Similarity=0.308  Sum_probs=48.7

Q ss_pred             CceeeecCCCcEEEEEEeeec--ccceeEEeecc-------ceeEec---------ccceEEEEeccccceEEEEEEEcc
Q psy4613           8 NQLVGAPIDTDVTLECYVEAY--PKSINYWVRDQ-------GDMVIS---------SERYEVESISRSIFDFKMRLTIKK   69 (96)
Q Consensus         8 ~~~~~~~~g~~~~l~c~~~~~--~~~~~~w~~~~-------~~~~~~---------~~~~~~~~~~~~~~~~~~~l~i~~   69 (96)
                      +..+.+..|++++|.|.+...  ....+.|++..       ..+...         ..++.+..   +.......|.|.+
T Consensus         4 p~~v~~~~G~~v~L~C~~~~~~~~~~~v~W~~~~~~~~~~~~~~i~~~~~~~~~~~~~r~~~~~---~~~~~~~sL~I~~   80 (115)
T 2or7_A            4 HTAVQGLAGHPVTLPCIYSTHLGGIVPMCWGLGECRHSYCIRSLIWTNGYTVTHQRNSRYQLKG---NISEGNVSLTIEN   80 (115)
T ss_dssp             --CEEEETTSCEEECCBCCHHHHCSCCEEEEESCHHHHTTTTEEEEECSSSEEEESSTTEECCS---CGGGTBCCEEESS
T ss_pred             ccEEEEEcCCCEEEEEEeecCCCCCEEEEEECCCCCcCCCceEEEEeCCeEcccccCccEEEec---CccCCeEEEEEcc
Confidence            455678999999999998653  24578999874       112111         11221110   0001235699999


Q ss_pred             CCCCCCeeEEEEEecCCC
Q psy4613          70 ITKYDLGSYKCIAKNSLG   87 (96)
Q Consensus        70 ~~~~d~g~y~c~~~~~~g   87 (96)
                      ++..|+|.|.|.+.....
T Consensus        81 v~~~DsG~Y~C~v~~~~~   98 (115)
T 2or7_A           81 TVVGDGGPYCCVVEIPGA   98 (115)
T ss_dssp             CCGGGCEEEEEEECCTTS
T ss_pred             CCHHHCEEEEEEEECCCc
Confidence            999999999999986543

>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens}

Probab=98.95  E-value=6e-09  Score=54.78  Aligned_cols=79  Identities=25%  Similarity=0.378  Sum_probs=51.9

Q ss_pred             eEEecCceeeecCCCcEEEEEEeeec-ccceeEEeeccc--ee--Eec---------ccceEEEEeccccceEEEEEEEc
Q psy4613           3 VIHVPNQLVGAPIDTDVTLECYVEAY-PKSINYWVRDQG--DM--VIS---------SERYEVESISRSIFDFKMRLTIK   68 (96)
Q Consensus         3 ~~~~~~~~~~~~~g~~~~l~c~~~~~-~~~~~~w~~~~~--~~--~~~---------~~~~~~~~~~~~~~~~~~~l~i~   68 (96)
                      .+...+..+.+..|+++.|.|.+.+. +.+.+.|++...  ..  ...         ..++.+....   ......|.|.
T Consensus       138 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~---~~~~~~L~I~  214 (259)
T 3omz_A          138 KVTQAQSSVSMPVRKAVTLNCLYETSWWSYYIFWYKRLPSKEMIFLIRQGSDEQNAKSGRYSVNFKK---AAKSVALTIS  214 (259)
T ss_dssp             EEECCCCCEEEETTCCEEECCEEECCCSSCEEEEEEECTTCCEEEEEEEETTSCCCEETTEEECCBG---GGTBCCEEES
T ss_pred             eeEEeCCEEEEcCCCCEEEEEECCCccCCceEEEeeeCCCCCcEEEEEECCcCCcccCCeEEEEEcC---cCCEEEEEEC
Confidence            44555566778899999999988774 678999998532  11  100         1222211100   0012459999


Q ss_pred             cCCCCCCeeEEEEEec
Q psy4613          69 KITKYDLGSYKCIAKN   84 (96)
Q Consensus        69 ~~~~~d~g~y~c~~~~   84 (96)
                      +++..|+|.|.|.+..
T Consensus       215 ~v~~~DsG~Y~C~~~~  230 (259)
T 3omz_A          215 ALQLEDSAKYFCALGE  230 (259)
T ss_dssp             SCCGGGCSEEEEEEES
T ss_pred             CCChhHCEEEEEEEeC
Confidence            9999999999999974

>1j05_H T84.66 antibody, anti-CEA MAB T84.66, heavy chain; immunoglobulin, immune system; 1.50A {Mus musculus} SCOP: b.1.1.1 PDB: 1dvf_D 1mvu_B 1ap2_B 2ap2_B

Probab=98.95  E-value=7.5e-08  Score=45.36  Aligned_cols=78  Identities=13%  Similarity=0.230  Sum_probs=50.9

Q ss_pred             EEecCceeeecCCCcEEEEEEeeecc--cceeEEeeccc----eeEe--c------------ccceEEEEeccccceEEE
Q psy4613           4 IHVPNQLVGAPIDTDVTLECYVEAYP--KSINYWVRDQG----DMVI--S------------SERYEVESISRSIFDFKM   63 (96)
Q Consensus         4 ~~~~~~~~~~~~g~~~~l~c~~~~~~--~~~~~w~~~~~----~~~~--~------------~~~~~~~~~~~~~~~~~~   63 (96)
                      +..++ .+.+..|++++|.|.+.+.+  ...+.|++...    ..+.  .            ..++......   .....
T Consensus         4 v~qp~-~~~~~~G~~vtL~C~~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~---~~~~~   79 (121)
T 1j05_H            4 LQQSG-AELVEPGASVKLSCTASGFNIKDTYMHWVKQRPEQGLEWIGRIDPANGNSKYVPKFQGKATITADT---SSNTA   79 (121)
T ss_dssp             EEECC-CEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTCCEEEEEEEETTTTEEEECGGGBTTEEEEEEG---GGTEE
T ss_pred             EECCC-CEEEeCCCcEEEEEEecCcccCCcEEEEEEECCCCCcEEEEEEecCCCceeeCcccCCcEEEEEcC---CCCEE
Confidence            44444 46789999999999987543  45799987531    1111  0            1133322111   01245


Q ss_pred             EEEEccCCCCCCeeEEEEEecC
Q psy4613          64 RLTIKKITKYDLGSYKCIAKNS   85 (96)
Q Consensus        64 ~l~i~~~~~~d~g~y~c~~~~~   85 (96)
                      .|.|.+++.+|+|.|.|.+.+.
T Consensus        80 ~L~I~~~~~~Dsg~Y~C~~~~~  101 (121)
T 1j05_H           80 YLQLTSLTSEDTAVYYCAPFGY  101 (121)
T ss_dssp             EEEECSCCGGGCEEEEEEEEBT
T ss_pred             EEEECCCCHHHCEEEEEEEEcC
Confidence            7999999999999999999875

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*

Probab=98.95  E-value=3.2e-09  Score=56.31  Aligned_cols=70  Identities=19%  Similarity=0.211  Sum_probs=51.5

Q ss_pred             cCceeeecCCCcEEEEEEeeecccce-eEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEec
Q psy4613           7 PNQLVGAPIDTDVTLECYVEAYPKSI-NYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKN   84 (96)
Q Consensus         7 ~~~~~~~~~g~~~~l~c~~~~~~~~~-~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~   84 (96)
                      .+....+..|..+.|.|.+.+.+.+. +.|++.+........++....        ...|.|.++...|.|.|.|.+.+
T Consensus        95 ~~~~~~v~~g~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~--------~~~L~i~~v~~~d~G~Y~C~a~~  165 (289)
T 3ejj_X           95 LAQEVTVVEGQEAVLPCLITDPALKDSVSLMREGGRQVLRKTVYFFSP--------WRGFIIRKAKVLDSNTYVCKTMV  165 (289)
T ss_dssp             SCSEEEEETTSCEEECEEESCGGGGGSEEEEEGGGEECCTTCCEEEET--------TTEEEESSCCGGGCEEEEEEEEE
T ss_pred             ccceEEEecCCceEeEEEccCCCcceEEEEEecCCeecCCCccEEECC--------CCCEEEeecccccCEEEEEEEEe
Confidence            34566788899999999999877665 999875555443334433321        24589999999999999999983

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens}

Probab=98.95  E-value=1.2e-08  Score=51.65  Aligned_cols=63  Identities=24%  Similarity=0.321  Sum_probs=43.5

Q ss_pred             CCC-cEEEEEEeeec-ccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCC-CCCeeEEEEEecCCCceEE
Q psy4613          15 IDT-DVTLECYVEAY-PKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITK-YDLGSYKCIAKNSLGEVES   91 (96)
Q Consensus        15 ~g~-~~~l~c~~~~~-~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~-~d~g~y~c~~~~~~g~~~~   91 (96)
                      .|. .+.|.|.+.+. +.+.+.|++++..+. ..                ..|.|..... .|.|.|.|.+.|..|....
T Consensus       122 ~g~~~v~L~C~~~g~~p~p~i~W~~~g~~l~-~~----------------~~l~i~~~~~~~d~G~Y~C~a~N~~g~~s~  184 (193)
T 2if7_A          122 NMTCELHLTCSVEDADDNVSFRWEALGNTLS-SQ----------------PNLTVSWDPRISSEQDYTCIAENAVSNLSF  184 (193)
T ss_dssp             CSSEEEEEEEEEESCCTTCEEEEEETTEEEE-SS----------------SEEEEEECTTTCSCCEEEEEEEETTEEEEE
T ss_pred             CCCceEEEEEEEecCCCceEEEEEeCCEEcC-CC----------------CeEEEEeccCcCCCCcEEEEEECCCCcccc
Confidence            344 79999999985 478999999864332 11                1234433334 3899999999999987765


Q ss_pred             EEE
Q psy4613          92 SIR   94 (96)
Q Consensus        92 ~~~   94 (96)
                      .+.
T Consensus       185 ~~~  187 (193)
T 2if7_A          185 SVS  187 (193)
T ss_dssp             EEE
T ss_pred             ccc
Confidence            543

>1yc7_A Anti-VSG immunoglobulin heavy chain variable domain caban33; antibody, camel antibody, immune system; 1.60A {Camelus dromedarius} PDB: 1yc8_A 1yzz_A

Probab=98.95  E-value=1e-07  Score=45.20  Aligned_cols=78  Identities=17%  Similarity=0.268  Sum_probs=50.9

Q ss_pred             EEecCceeeecCCCcEEEEEEeeecc--cceeEEeeccc----eeEe--c-----------ccceEEEEeccccceEEEE
Q psy4613           4 IHVPNQLVGAPIDTDVTLECYVEAYP--KSINYWVRDQG----DMVI--S-----------SERYEVESISRSIFDFKMR   64 (96)
Q Consensus         4 ~~~~~~~~~~~~g~~~~l~c~~~~~~--~~~~~w~~~~~----~~~~--~-----------~~~~~~~~~~~~~~~~~~~   64 (96)
                      +..| ..+.+..|++++|.|.+.+..  ...+.|++...    ..+.  .           ..++.+....   ......
T Consensus         4 l~qp-~~~~~~~G~~vtL~C~~s~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~Rf~~~~~~---~~~~~~   79 (124)
T 1yc7_A            4 LVES-GGGSVQAGGSLRLSCAVSGSTYSPCTTGWYRQAPGKEREWVSSISSPGTIYYQDSVKGRFTISRDN---AKNTVY   79 (124)
T ss_dssp             EEEE-CCEEECTTCCEEEEEEEESCCSSCEEEEEEEECTTSCEEEEEEECSTTCEEECGGGTTTEEEEEET---TTTEEE
T ss_pred             EECC-CCEEEecCCCEEEEEEEeCCCcCCCEEEEEEECCCCCeEEEEEEecCCceeeCcccCCcEEEEEEC---CCCEEE
Confidence            4444 356789999999999987533  45799987531    1111  1           1133322211   012467


Q ss_pred             EEEccCCCCCCeeEEEEEecC
Q psy4613          65 LTIKKITKYDLGSYKCIAKNS   85 (96)
Q Consensus        65 l~i~~~~~~d~g~y~c~~~~~   85 (96)
                      |.|.+++.+|+|.|.|.+.+.
T Consensus        80 L~I~~~~~~Dsg~Y~C~~~~~  100 (124)
T 1yc7_A           80 LQMNSLQREDTGMYYCQIQCG  100 (124)
T ss_dssp             EEECSCCGGGCEEEEEEEEEC
T ss_pred             EEECCCCHHHCEEEEEEEEeC
Confidence            999999999999999998865

>2bnu_A TCR alpha chain, T-cell receptor alpha chain C region; superagonist peptide T-cell vaccines, transmembrane, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2bnq_D 2bnr_D 2f54_D 2pyf_A* 2pye_D* 2f53_D 2p5e_D* 2p5w_D* 3mv7_D 3mv8_D 3mv9_D 3utt_D 2cdg_A

Probab=98.95  E-value=2.2e-08  Score=51.24  Aligned_cols=78  Identities=15%  Similarity=0.199  Sum_probs=53.2

Q ss_pred             EEecCceeeecCCCcEEEEEEeeecccceeEEeeccc----eeE-ec--------ccceEEEEeccccceEEEEEEEccC
Q psy4613           4 IHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQG----DMV-IS--------SERYEVESISRSIFDFKMRLTIKKI   70 (96)
Q Consensus         4 ~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~----~~~-~~--------~~~~~~~~~~~~~~~~~~~l~i~~~   70 (96)
                      +..++..+.+..|+++.|.|.+.+.....+.|++...    ..+ ..        ..++......   ......|.|.++
T Consensus         3 v~q~p~~v~v~~G~~v~L~C~~s~~~~~~v~W~rq~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~---~~~~~sL~I~~v   79 (203)
T 2bnu_A            3 VTQIPAALSVPEGENLVLNCSFTDSAIYNLQWFRQDPGKGLTSLLLIQSSQREQTSGRLNASLDK---SSGRSTLYIAAS   79 (203)
T ss_dssp             EEEECSEEEEETTCCEEEEEEESCCCEEEEEEEEECTTSCEEEEEEEETTCSEEEETTEEEEEET---TTTEEEEEESSC
T ss_pred             cEEcCCEEEEeCCCCEEEEEEECCCCcceEEEEEeCCCCCcEEEEEECCCCccccCCCeEEEEcC---CCCEEEEEEeeC
Confidence            4556677889999999999998765556899987531    111 10        1233222110   012467999999


Q ss_pred             CCCCCeeEEEEEec
Q psy4613          71 TKYDLGSYKCIAKN   84 (96)
Q Consensus        71 ~~~d~g~y~c~~~~   84 (96)
                      +..|.|.|.|.+.+
T Consensus        80 ~~~Dsg~Y~C~~~~   93 (203)
T 2bnu_A           80 QPGDSATYLCAVRP   93 (203)
T ss_dssp             CGGGCEEEEEEEEE
T ss_pred             CcccCeEEEEEEEc
Confidence            99999999999876

>1hxm_A Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=98.95  E-value=3.8e-08  Score=51.25  Aligned_cols=80  Identities=19%  Similarity=0.252  Sum_probs=54.9

Q ss_pred             eEEecCceeeecCCCcEEEEEEeeecc--cceeEEeeccc----eeEec---------ccceEEEEeccccceEEEEEEE
Q psy4613           3 VIHVPNQLVGAPIDTDVTLECYVEAYP--KSINYWVRDQG----DMVIS---------SERYEVESISRSIFDFKMRLTI   67 (96)
Q Consensus         3 ~~~~~~~~~~~~~g~~~~l~c~~~~~~--~~~~~w~~~~~----~~~~~---------~~~~~~~~~~~~~~~~~~~l~i   67 (96)
                      .+...+..+.+..|+++.|.|.+.+.+  ...+.|++...    ..+..         ..++......   ......|.|
T Consensus         3 ~v~q~p~~v~v~~G~~vtL~C~~s~~~~~~~~v~W~rq~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~---~~~~~sL~I   79 (229)
T 1hxm_A            3 ELVPEHQTVPVSIGVPATLRCSMKGEAIGNYYINWYRKTQGNTMTFIYREKDIYGPGFKDNFQGDIDI---AKNLAVLKI   79 (229)
T ss_dssp             CEEESCSEEEEETTCCEEEEEEECSSCGGGSEEEEEEEESSSCSEEEEETTTEECTTTTTTEEEEEEG---GGTEEEEEE
T ss_pred             ccEeCCCEEEEcCCCCEEEEeEecCCccCcceEEEEEECCCCCcEEEEEcCCccCCCcCCeEEEEEcC---CCCEEEEEE
Confidence            355667778899999999999988543  45799987531    12111         1334333211   012357999


Q ss_pred             ccCCCCCCeeEEEEEecC
Q psy4613          68 KKITKYDLGSYKCIAKNS   85 (96)
Q Consensus        68 ~~~~~~d~g~y~c~~~~~   85 (96)
                      .+++..|.|.|.|.+.+.
T Consensus        80 ~~v~~~Dsg~Y~C~~~~~   97 (229)
T 1hxm_A           80 LAPSERDEGSYYCACDTL   97 (229)
T ss_dssp             SSCCGGGCEEEEEEEECC
T ss_pred             CcCCHhHCeEEEEEEecC
Confidence            999999999999999875

>1a2y_B IGG1-kappa D1.3 FV (heavy chain); complex (immunoglobulin/hydrolase), immunoglobulin V region, signal, hydrolase, glycosidase, bacteriolytic enzyme, egg white; 1.50A {Mus musculus} SCOP: b.1.1.1 PDB: 1a7r_H 1dvf_B 1g7h_B 1g7i_B 1g7j_B 1g7l_B 1g7m_B 1kir_B 1vfa_B 1vfb_B 1kiq_B 1a7o_H 1a7n_H 1a7p_H 1kip_B 1a7q_H 1dl7_H* 1bvk_B 1bvl_A 1p4i_H ...

Probab=98.95  E-value=1.2e-07  Score=44.39  Aligned_cols=78  Identities=13%  Similarity=0.264  Sum_probs=50.9

Q ss_pred             EEecCceeeecCCCcEEEEEEeeecc--cceeEEeeccc----eeE-e-c-----------ccceEEEEeccccceEEEE
Q psy4613           4 IHVPNQLVGAPIDTDVTLECYVEAYP--KSINYWVRDQG----DMV-I-S-----------SERYEVESISRSIFDFKMR   64 (96)
Q Consensus         4 ~~~~~~~~~~~~g~~~~l~c~~~~~~--~~~~~w~~~~~----~~~-~-~-----------~~~~~~~~~~~~~~~~~~~   64 (96)
                      +..++. +.+..|++++|.|.+.+.+  ...+.|++...    ..+ . .           ..++......   ......
T Consensus         4 v~q~~~-~~~~~G~~vtL~C~~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~---~~~~~~   79 (116)
T 1a2y_B            4 LQESGP-GLVAPSQSLSITCTVSGFSLTGYGVNWVRQPPGKGLEWLGMIWGDGNTDYNSALKSRLSISKDN---SKSQVF   79 (116)
T ss_dssp             EEEECC-SEECTTSCEEEEEEEESSCTTSSEEEEEEECTTSCCEEEEEECTTSCEEECTTTGGGEEEEEEG---GGTEEE
T ss_pred             EEcCCC-EEEeCCCcEEEEEEEcCCCcCCcEEEEEEeCCCCCcEEEEEEecCCCeeeCcccCCcEEEEEEC---CCCEEE
Confidence            444443 6789999999999987643  46899987531    111 1 0           1233322211   012467


Q ss_pred             EEEccCCCCCCeeEEEEEecC
Q psy4613          65 LTIKKITKYDLGSYKCIAKNS   85 (96)
Q Consensus        65 l~i~~~~~~d~g~y~c~~~~~   85 (96)
                      |.|.+++..|+|.|.|.+.+.
T Consensus        80 L~I~~~~~~Dsg~Y~C~~~~~  100 (116)
T 1a2y_B           80 LKMNSLHTDDTARYYCARERD  100 (116)
T ss_dssp             EEECSCCGGGCEEEEEEEESS
T ss_pred             EEECCCCHHHCEEEEEEEecC
Confidence            999999999999999999865

>2nms_A CMRF35-like-molecule 1; IG-superfamily, IG-V, NKP44-like, myeloid IG-like receptor, inhibitory receptor, myelo-monocytic cells; 2.60A {Homo sapiens}

Probab=98.95  E-value=1.3e-07  Score=44.86  Aligned_cols=76  Identities=16%  Similarity=0.288  Sum_probs=49.9

Q ss_pred             CceeeecCCCcEEEEEEeeeccc-ceeEEeeccc----ee-Eec--------ccceEEEEeccccceEEEEEEEccCCCC
Q psy4613           8 NQLVGAPIDTDVTLECYVEAYPK-SINYWVRDQG----DM-VIS--------SERYEVESISRSIFDFKMRLTIKKITKY   73 (96)
Q Consensus         8 ~~~~~~~~g~~~~l~c~~~~~~~-~~~~w~~~~~----~~-~~~--------~~~~~~~~~~~~~~~~~~~l~i~~~~~~   73 (96)
                      +..+.+.+|++++|.|....... ..+.|++...    .. +..        ..++.+....   ......|.|.+++..
T Consensus         9 p~~v~~~~G~svtL~C~~s~~~~~~~~~W~rq~~~~~~~~li~~~~~~~~~~~~R~~~~~~~---~~~~~sL~I~~l~~~   85 (124)
T 2nms_A            9 PTTVNGLERGSLTVQCVYRSGWETYLKWWCRGAIWRDCKILVKTSGSEQEVKRDRVSIKDNQ---KNRTFTVTMEDLMKT   85 (124)
T ss_dssp             CSEEEEETTCCEEEEEEECTTCTTSEEEEEESSSSTTCEEEEECCSSSCCEEETTEEEEEET---TTTEEEEEECSCCGG
T ss_pred             ccEEEEeCCCCEEEEeEEeCCcccccEEEEeCCCCCCceEEEEcCCcccceeCCCEEEEEcC---cCCEEEEEEeCCCHH
Confidence            35677899999999999876433 3688998642    11 111        1222222111   112467999999999


Q ss_pred             CCeeEEEEEecCC
Q psy4613          74 DLGSYKCIAKNSL   86 (96)
Q Consensus        74 d~g~y~c~~~~~~   86 (96)
                      |+|.|.|.+....
T Consensus        86 Dsg~Y~C~~~~~~   98 (124)
T 2nms_A           86 DADTYWCGIEKTG   98 (124)
T ss_dssp             GCEEEEEEEEETT
T ss_pred             HCEEEEEEEEcCC
Confidence            9999999988653

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*

Probab=98.94  E-value=3e-09  Score=54.01  Aligned_cols=77  Identities=13%  Similarity=0.017  Sum_probs=48.7

Q ss_pred             eeeecCCCcEEEEEEeeecccceeEEeeccceeE-----e-cccceEEEEecc--cc--ceEEEEEEEccCCCCCCeeEE
Q psy4613          10 LVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMV-----I-SSERYEVESISR--SI--FDFKMRLTIKKITKYDLGSYK   79 (96)
Q Consensus        10 ~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~-----~-~~~~~~~~~~~~--~~--~~~~~~l~i~~~~~~d~g~y~   79 (96)
                      ...+..|+.+.|.|...+.+.+.+.|++......     . ............  ..  ......|.|.+++..|.|.|.
T Consensus         8 ~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~L~i~~v~~~D~G~Y~   87 (208)
T 3r4d_A            8 PPQVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSLLFQMITMKDMGVYT   87 (208)
T ss_dssp             SSEEETTCCEEEEEECCCSSCSEEEEEESSCCCGGGEEEEEEGGGTEEEECTTCCSSEEECTTSCEEECSCCGGGCEEEE
T ss_pred             cceeecCCcEEEEEeCCCCCceEEEeccCCCCCccceEEEEecCCCccccCccccceeEEecCCeEEEccccccCCeEEE
Confidence            3567899999999998887888999997632110     0 000000000000  00  001136999999999999999


Q ss_pred             EEEecCC
Q psy4613          80 CIAKNSL   86 (96)
Q Consensus        80 c~~~~~~   86 (96)
                      |.+.+..
T Consensus        88 C~~~~~~   94 (208)
T 3r4d_A           88 LDMTDEN   94 (208)
T ss_dssp             EEEECSS
T ss_pred             EEEEccc
Confidence            9999874

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D

Probab=98.94  E-value=1e-09  Score=59.09  Aligned_cols=72  Identities=15%  Similarity=0.196  Sum_probs=51.7

Q ss_pred             CCeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEE
Q psy4613           1 HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKC   80 (96)
Q Consensus         1 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c   80 (96)
                      +|.+...+. ..+..|+.+.|.|.+.+. .+.+.|++++..+.... ...         .....|.|.+++..|.|.|.|
T Consensus        24 ~P~i~~~p~-~~v~~G~~v~L~C~~~~~-~~~~~W~k~g~~~~~~~-~~~---------~~~~~L~I~~v~~~D~G~Y~C   91 (316)
T 3vh8_G           24 KPFLSAWPS-AVVPRGGHVTLRCHYRHR-FNNFMLYKEDRIHIPIF-HGR---------IFQESFNMSPVTTAHAGNYTC   91 (316)
T ss_dssp             CCEEEEESC-SEEETTSCEEEEEEBTTB-CCSEEEEESSCSSSCHH-HHC---------CBSSCEEECSCCGGGCEEEEE
T ss_pred             CCEeeccCC-CccCCCCCEEEEEEccCC-CceEEEEeCCCccceee-cCC---------cceEEEEECCCCcccCeEEEE
Confidence            356665555 457799999999999886 67889999875532110 000         012568899999999999999


Q ss_pred             EEec
Q psy4613          81 IAKN   84 (96)
Q Consensus        81 ~~~~   84 (96)
                      .+.+
T Consensus        92 ~a~~   95 (316)
T 3vh8_G           92 RGSH   95 (316)
T ss_dssp             EEBC
T ss_pred             EEEc
Confidence            9875

>1mju_H Immunoglobulin MS6-12; catalytic antibody, ester hydrolysis, esterolytic, FAB, immune system; 1.22A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mjj_B 1mie_H 1mj7_H* 1mj8_H 1mh5_B* 4aeh_H 2y5t_A 2vwe_E 2op4_H 2ntf_H 3loh_C 1e4x_H 2vl5_A 1e4x_I 1e4w_H 3opz_H 3oz9_H 1plg_H 1hi6_B 1cfn_B ...

Probab=98.94  E-value=1.9e-08  Score=52.06  Aligned_cols=74  Identities=19%  Similarity=0.288  Sum_probs=45.0

Q ss_pred             ecCCCcEEEEEEeeec-ccc-eeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCceE
Q psy4613          13 APIDTDVTLECYVEAY-PKS-INYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVE   90 (96)
Q Consensus        13 ~~~g~~~~l~c~~~~~-~~~-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~~   90 (96)
                      +..|..+.|.|.+.+. |.+ .+.|++++..+....... ... . ..+...+.|.|......| |.|.|.+.+..+...
T Consensus       133 ~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~~~~~~~~~~-~~~-~-g~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~  208 (227)
T 1mju_H          133 DTSGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPA-VLQ-S-DLYTLSSSVTVTSSTWPS-QSITCNVAHPASSTK  208 (227)
T ss_dssp             -----CEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCC-EEE-T-TEEEEEEEEEECTTTTTT-SCCEEEEEEGGGTEE
T ss_pred             ccCCCcEEEEEEeecEeCCCeEEEEecCCCcCCcEECCc-eec-C-CeEEEEEEEEEchhhcCC-CeEEEEEEECCCCcc
Confidence            4568999999999985 666 899998764421100000 000 0 122245678898888877 999999999765443

>4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A*

Probab=98.93  E-value=7.4e-08  Score=49.08  Aligned_cols=74  Identities=12%  Similarity=0.152  Sum_probs=47.4

Q ss_pred             ecCCCcEEEEEEe-eecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCce
Q psy4613          13 APIDTDVTLECYV-EAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEV   89 (96)
Q Consensus        13 ~~~g~~~~l~c~~-~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~   89 (96)
                      ...+....+.|.. .+.|.+.+.|++++...... ..  ........+...+.|.|..+...|.|.|.|.+.|..+..
T Consensus       133 ~~~~~~~~~~c~~~~~~P~~~~~w~~~~~~~~~~-~~--~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~~~~  207 (225)
T 4fmk_A          133 IGPQSVAVARCVSTGGRPPARITWISSLGGEAKD-TQ--EPGIQAGTVTIISRYSLVPVGRADGVKVTCRVEHESFEE  207 (225)
T ss_dssp             CSSSCEEEEEEEEEEEBSCCEEEEECSSCCEEEE-EE--EECSSTTCEEEEEEEEECCCGGGTTCEEEEEEECTTCSS
T ss_pred             ecceeeeeeeeeecCCCCCCEEEEEECCccccCC-cc--eEEecCCCEEEEEEEEEeeCCHHHCCEEEEEEEcCCCCe
Confidence            4456666666665 45677788898876544321 00  111111122234679999999999999999999987754

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A

Probab=98.93  E-value=4.7e-08  Score=49.83  Aligned_cols=76  Identities=13%  Similarity=0.021  Sum_probs=48.6

Q ss_pred             eeecCCCcEEEEEEeeeccc---ceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCC
Q psy4613          11 VGAPIDTDVTLECYVEAYPK---SINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLG   87 (96)
Q Consensus        11 ~~~~~g~~~~l~c~~~~~~~---~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g   87 (96)
                      ..+..|+.+.|.|.+.+.++   +.+.|++++..+.........  ...........|.+......|.|.|.|.+.|..+
T Consensus       101 ~~~~~G~~~~L~C~~~~~~p~~~~~i~W~k~~~~l~~~~~~~~~--~~~~~~~~~~~l~i~~~~~d~~g~ytC~A~n~~~  178 (202)
T 1vca_A          101 GPLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDA--DRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHID  178 (202)
T ss_dssp             SCEETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEECCSCC--SSCCCEEEEEEEEECCCGGGTTCEEEEEEEECSC
T ss_pred             eEEcCCCCEEEEEEECCcCCCCCeEEEEEeCCeECccccccccc--CcCcceEEEEEEEEEeeeccCCCeEEEEEEcccc
Confidence            34678999999999987543   368999987654321100000  0000011345677888888888999999999876


Q ss_pred             c
Q psy4613          88 E   88 (96)
Q Consensus        88 ~   88 (96)
                      .
T Consensus       179 ~  179 (202)
T 1vca_A          179 E  179 (202)
T ss_dssp             C
T ss_pred             C
Confidence            5

>1ypz_F T-cell receptor gamma chain, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=98.93  E-value=1.7e-08  Score=52.36  Aligned_cols=79  Identities=18%  Similarity=0.266  Sum_probs=53.2

Q ss_pred             EEecCceeeecCCCcEEEEEEeeec--ccceeEEeeccc----eeE-e------------cccceEEEEeccccceEEEE
Q psy4613           4 IHVPNQLVGAPIDTDVTLECYVEAY--PKSINYWVRDQG----DMV-I------------SSERYEVESISRSIFDFKMR   64 (96)
Q Consensus         4 ~~~~~~~~~~~~g~~~~l~c~~~~~--~~~~~~w~~~~~----~~~-~------------~~~~~~~~~~~~~~~~~~~~   64 (96)
                      +...+..+.+..|+++.|.|.+.+.  +.+.+.|++...    ..+ .            ...++.+....  . .....
T Consensus         4 v~q~p~~v~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~--~-~~~~~   80 (230)
T 1ypz_F            4 LEQPEISISRPRDETAQISCKVFIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNP--S-ASTSI   80 (230)
T ss_dssp             EECSCSEEEEETTSCEEEEEEECCGGGGGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECC--T-TTEEE
T ss_pred             ccccCCEEEEeCCCcEEEEEEeeccccCccEEEEEEECCCCCCEEEEEEecCCeeecCcccCCeEEEEEcC--C-CCEEE
Confidence            4556677889999999999998874  566899987531    111 1            01222222100  0 02357


Q ss_pred             EEEccCCCCCCeeEEEEEecC
Q psy4613          65 LTIKKITKYDLGSYKCIAKNS   85 (96)
Q Consensus        65 l~i~~~~~~d~g~y~c~~~~~   85 (96)
                      |.|.+++..|+|.|.|.+.+.
T Consensus        81 L~I~~v~~~D~G~Y~C~~~~~  101 (230)
T 1ypz_F           81 LTIYSLEEEDEAIYYCSYGEG  101 (230)
T ss_dssp             EEECSCCGGGCSEEEEEECCT
T ss_pred             EEECcCChhhCEEEEEEEECC
Confidence            999999999999999999874

>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A

Probab=98.93  E-value=5e-09  Score=53.51  Aligned_cols=72  Identities=11%  Similarity=0.153  Sum_probs=45.7

Q ss_pred             CCCcEEEEEEeeec-cc-ceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCC
Q psy4613          15 IDTDVTLECYVEAY-PK-SINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLG   87 (96)
Q Consensus        15 ~g~~~~l~c~~~~~-~~-~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g   87 (96)
                      .|..+.|.|.+.+. |. ..+.|++++..+... ............+...+.|.+......|.|.|.|.+.|...
T Consensus       123 ~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~-~~~~~~~~~~g~~~~~s~l~i~~~~~~~~g~ytC~a~n~~l  196 (207)
T 2vol_A          123 AKDKVSLTCMITDFFPEDITVEWESNGQPAENY-KNTQPIMDTDGSYFVYSKLNVQKSNWEAGNTFTCSVLHEGL  196 (207)
T ss_dssp             SSSEEEEEEEEEEEBSSCCEEEEEETTEECSCE-EECCCEECTTSCEEEEEEEEEEHHHHSSCCEEEEEEECTTS
T ss_pred             cCCceEEEEEEeeEECCCCEEEEEECCEeccCc-ccCCceECCCCCEEEEEEEEECHHHcCCCCEEEEEEECCCC
Confidence            48899999999985 44 389999987644211 11111111222333455677766666678999999999754

>1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ...

Probab=98.93  E-value=1.9e-08  Score=51.68  Aligned_cols=74  Identities=14%  Similarity=0.261  Sum_probs=50.3

Q ss_pred             eeeecCCCcEEEEEEeeecc--cceeEEeecc--cee--E-e---------------cccceEEEEeccccceEEEEEEE
Q psy4613          10 LVGAPIDTDVTLECYVEAYP--KSINYWVRDQ--GDM--V-I---------------SSERYEVESISRSIFDFKMRLTI   67 (96)
Q Consensus        10 ~~~~~~g~~~~l~c~~~~~~--~~~~~w~~~~--~~~--~-~---------------~~~~~~~~~~~~~~~~~~~~l~i   67 (96)
                      .+.+..|+.+.|.|.+.+.+  .+.+.|++..  ...  . .               ...++.+.....   .....|.|
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~---~~~~~L~I   85 (222)
T 1q9r_B            9 GGLVQSGGSLRLSCATSGFTFTDYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRDNS---QSILYLQM   85 (222)
T ss_dssp             CCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEETT---TTEEEEEE
T ss_pred             ceeEcCCCEEEEEEEecCccCCCCcEEEEEECCCCCcEEEEEEccCCcccccccCcccCCceEEEEECC---CCeEEEEE
Confidence            45688999999999998755  6789998753  111  1 0               012333322110   02357999


Q ss_pred             ccCCCCCCeeEEEEEecCC
Q psy4613          68 KKITKYDLGSYKCIAKNSL   86 (96)
Q Consensus        68 ~~~~~~d~g~y~c~~~~~~   86 (96)
                      .+++..|.|.|.|.+.+..
T Consensus        86 ~~v~~~D~G~Y~C~~~~~~  104 (222)
T 1q9r_B           86 NTLRAEDSATYYCARDHDG  104 (222)
T ss_dssp             CSCCGGGCEEEEEEECCCS
T ss_pred             CcCCcccCeEEEEEEeccC
Confidence            9999999999999998864

>2yc1_A Single chain antibody fragment 9004G; immune system-toxin complex, scorpion toxin; 1.90A {Homo sapiens} PDB: 2ybr_A 1dql_H 3cfi_C

Probab=98.93  E-value=6.5e-08  Score=45.28  Aligned_cols=78  Identities=14%  Similarity=0.195  Sum_probs=51.0

Q ss_pred             EEecCceeeecCCCcEEEEEEeeecc--cceeEEeeccc--e--eE-e-c------------ccceEEEEeccccceEEE
Q psy4613           4 IHVPNQLVGAPIDTDVTLECYVEAYP--KSINYWVRDQG--D--MV-I-S------------SERYEVESISRSIFDFKM   63 (96)
Q Consensus         4 ~~~~~~~~~~~~g~~~~l~c~~~~~~--~~~~~w~~~~~--~--~~-~-~------------~~~~~~~~~~~~~~~~~~   63 (96)
                      +..++ .+.+..|++++|.|.+.+..  ...+.|++...  .  .+ . .            ..++......   .....
T Consensus         4 v~qp~-~~~~~~G~~vtL~C~~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~---~~~~~   79 (117)
T 2yc1_A            4 LVESG-GGLVQPGGSLRLSCTGSGFTFDNYAMHWLRQVPGEGLEWVSGISRSSGDIDYADSVKGRFTISRDD---AKKTL   79 (117)
T ss_dssp             EEEEC-CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECGGGTTTEEEEEET---TTTEE
T ss_pred             EEcCC-CEEEcCCCeEEEEEEecCcccCCCeEEEEEECCCCCcEEEEEEccCCCceeeCcccCCeEEEEEeC---CCCEE
Confidence            44444 46789999999999987533  46799987531  1  11 1 0            1233322211   01235


Q ss_pred             EEEEccCCCCCCeeEEEEEecC
Q psy4613          64 RLTIKKITKYDLGSYKCIAKNS   85 (96)
Q Consensus        64 ~l~i~~~~~~d~g~y~c~~~~~   85 (96)
                      .|.|.+++..|+|.|.|.+.+.
T Consensus        80 ~L~I~~~~~~Dsg~Y~C~~~~~  101 (117)
T 2yc1_A           80 SLQMNSLRAEDTAVYYCARGGV  101 (117)
T ss_dssp             EEEECSCCGGGCEEEEEEEEET
T ss_pred             EEEECCCCHHHCEEEEEEEEeC
Confidence            7999999999999999998764

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens}

Probab=98.93  E-value=1e-08  Score=60.88  Aligned_cols=74  Identities=23%  Similarity=0.325  Sum_probs=53.4

Q ss_pred             ceeeecCCCcEEEEEEeeecccceeE-Ee--eccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecC
Q psy4613           9 QLVGAPIDTDVTLECYVEAYPKSINY-WV--RDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNS   85 (96)
Q Consensus         9 ~~~~~~~g~~~~l~c~~~~~~~~~~~-w~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~   85 (96)
                      ..+.+..|+.+.|.|.+.+.|.|.+. |.  +++..+... ..   ....  .......|.|.++...|.|.|.|.+.|.
T Consensus       172 ~~~~v~~G~~v~l~C~~~g~P~p~i~~W~~~~~g~~l~~~-~~---~~~~--~~~~~~~l~I~~~~~~d~g~Y~c~A~n~  245 (731)
T 2v5y_A          172 QNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLK-EI---KVTS--SRRFIASFNVVNTTKRDAGKYRCMIRTE  245 (731)
T ss_dssp             CCEEEETTSCEEEEEEEESCCCTTCEEEEEESSSCCEEEE-EE---EECC--SSEEEEEEEECSCCTTTCEEEEEEEEET
T ss_pred             cceEEeCCCcEEEEEEeCCCCCCceeEEEecCCCcccccc-ce---EEec--cccceEEEEEcccccccCeEEEEEEECC
Confidence            45778899999999999999999887 66  444333211 10   0000  1113478999999999999999999999


Q ss_pred             CCc
Q psy4613          86 LGE   88 (96)
Q Consensus        86 ~g~   88 (96)
                      .|.
T Consensus       246 ~G~  248 (731)
T 2v5y_A          246 GGV  248 (731)
T ss_dssp             TEE
T ss_pred             CCC
Confidence            886

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}

Probab=98.93  E-value=1.5e-09  Score=57.61  Aligned_cols=77  Identities=18%  Similarity=0.189  Sum_probs=53.4

Q ss_pred             CCeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEE
Q psy4613           1 HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKC   80 (96)
Q Consensus         1 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c   80 (96)
                      +|.+...+..+.+..|+.+.|.|.+.+.    +.|++.....      ......     .....|.|.+++..|.|.|.|
T Consensus         4 ~P~i~~~~~~~~v~~G~~v~L~C~~~~~----v~W~~~~~~~------~~~~~~-----~~~~~L~i~~~~~~d~G~Y~C   68 (292)
T 4dkd_C            4 IPVIEPSVPELVVKPGATVTLRCVGNGS----VEWDGPPSPH------WTLYSD-----GSSSILSTNNATFQNTGTYRC   68 (292)
T ss_dssp             CCEEESCCSSCEECTTCCEEEEEECSSC----CCBCCCCCSS------CEECCB-----TTEEEEEESSCCGGGCSCEEE
T ss_pred             CceecCCCCeEEEcCCCcEEEEEcCCCc----eEEccCCCCc------eEEecc-----CceEEEEEcccccccCEEEEE
Confidence            5778777778889999999999998773    8898653221      111100     023689999999999999999


Q ss_pred             EEecCCCceEEE
Q psy4613          81 IAKNSLGEVESS   92 (96)
Q Consensus        81 ~~~~~~g~~~~~   92 (96)
                      .+.+..+.....
T Consensus        69 ~~~n~~~~~~~~   80 (292)
T 4dkd_C           69 TEPGDPLGGSAA   80 (292)
T ss_dssp             CCCC----CCEE
T ss_pred             EEccCCCCcceE
Confidence            998876654433

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A

Probab=98.93  E-value=1.8e-08  Score=51.86  Aligned_cols=87  Identities=18%  Similarity=0.269  Sum_probs=54.6

Q ss_pred             cCceeeecCCCcEEEEEEeeeccc-ceeEEeecccee----Ee----cccceEEEEe-ccc---c--ceEEEEEEEccCC
Q psy4613           7 PNQLVGAPIDTDVTLECYVEAYPK-SINYWVRDQGDM----VI----SSERYEVESI-SRS---I--FDFKMRLTIKKIT   71 (96)
Q Consensus         7 ~~~~~~~~~g~~~~l~c~~~~~~~-~~~~w~~~~~~~----~~----~~~~~~~~~~-~~~---~--~~~~~~l~i~~~~   71 (96)
                      .+..+.+..|+.+.|.|.+.+.+. +.+.|++.+...    ..    ....+..... ...   .  ......|.|.+++
T Consensus         6 ~p~~~~v~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~L~i~~v~   85 (231)
T 2pet_A            6 VPPLVEVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPPYQLDSQGRLVLAEAQ   85 (231)
T ss_dssp             CCSEEEEETTCCEEECCCCBSCCSEEEEEEEEECTTCCCCEEEEEEEETTEEEEEECCCSCCSSCCEECTTCCEEESSCC
T ss_pred             CCCcEEEEcCCCEEEecccCCCCCceEEEEEEeCCCceeEEEEeccccCCccccccccccccccccccCCCceEEEcccC
Confidence            345677899999999999998884 899999754331    10    0111111110 000   0  0011239999999


Q ss_pred             CCCCeeEEEEEecCC-CceEEEE
Q psy4613          72 KYDLGSYKCIAKNSL-GEVESSI   93 (96)
Q Consensus        72 ~~d~g~y~c~~~~~~-g~~~~~~   93 (96)
                      ..|.|.|.|.+.+.. +.....+
T Consensus        86 ~~D~G~Y~C~~~~~~~~~~~~~~  108 (231)
T 2pet_A           86 VGDERDYVCVVRAGAAGTAEATA  108 (231)
T ss_dssp             GGGCEEEEEEEECGGGCEEEEEE
T ss_pred             cccCceEEEEEEecCCCceEEEE
Confidence            999999999999876 5444443

>3dmm_C T-cell surface glycoprotein CD8 alpha chain; T cell CO-receptor CD8AB MHC complex, immune response, membrane, MHC I, phosphoprotein, transmembrane; 2.60A {Mus musculus}

Probab=98.93  E-value=6.9e-08  Score=48.07  Aligned_cols=80  Identities=21%  Similarity=0.319  Sum_probs=53.0

Q ss_pred             CeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccc-------eeEe--c--------------ccceEEEEecccc
Q psy4613           2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQG-------DMVI--S--------------SERYEVESISRSI   58 (96)
Q Consensus         2 p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~-------~~~~--~--------------~~~~~~~~~~~~~   58 (96)
                      +.+...+..+.+..|+.+.|.|.........+.|++...       .++.  .              ..++.....   .
T Consensus        10 ~~v~Q~P~~v~v~~G~sVtL~C~~s~~~~~~v~WyrQ~pg~~~~~p~~Li~~~~~~~~~~y~~~~~~~~Rfs~s~~---~   86 (166)
T 3dmm_C           10 PELRIFPKKMDAELGQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSAMRD---T   86 (166)
T ss_dssp             CEEEEECSCBCCCTTCCEEEEEEEESSSCCEEEEEEEETTCSCCSCEEEEEEESSSCCEEECGGGSSCCSEEEECS---T
T ss_pred             ccEEEeCCeEEEcCCCCEEEEEEEeCCCCceEEEEEECCCCCCCCcEEEEEEeCCCCceeeccccccccceEEEcC---C
Confidence            345566667789999999999998754566899987422       1111  0              111211111   1


Q ss_pred             ceEEEEEEEccCCCCCCeeEEEEEecC
Q psy4613          59 FDFKMRLTIKKITKYDLGSYKCIAKNS   85 (96)
Q Consensus        59 ~~~~~~l~i~~~~~~d~g~y~c~~~~~   85 (96)
                       .....|.|.+++.+|+|.|+|.+...
T Consensus        87 -~~~~sL~I~~vq~eDsG~YyCa~~~~  112 (166)
T 3dmm_C           87 -NNKYVLTLNKFSKENEGYYFCSVISN  112 (166)
T ss_dssp             -TTEEEEEESSCCTTTCEEEEEEEESS
T ss_pred             -CCEEEEEECCCChhhCEEEEEEECCC
Confidence             12367999999999999999998753

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=98.93  E-value=1e-08  Score=53.76  Aligned_cols=63  Identities=13%  Similarity=0.290  Sum_probs=46.7

Q ss_pred             eecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecC
Q psy4613          12 GAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNS   85 (96)
Q Consensus        12 ~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~   85 (96)
                      .+..|+.++|.|.+.+. .+.+.|++++..+..   .....       .....|.|.+++..|.|.|.|.+.+.
T Consensus       112 ~v~~G~~vtL~C~~~~~-~~~~~w~k~g~~~~~---~~~~~-------~~~~~l~I~~v~~~d~G~Y~C~a~n~  174 (242)
T 1p6f_A          112 EVISGEKVTFYCRLDTA-TSMFLLLKEGRSSHV---QRGYG-------KVQAEFPLGPVTTAHRGTYRCFGSYN  174 (242)
T ss_dssp             EEETTCEEEEEEECTTS-CSEEEEEECSSSCEE---EEEEC-------SSEEEEEEEECCGGGCEEEEEEEEEE
T ss_pred             ccCCCCcEEEEEecCCC-CCEEEEEECCCccCc---cccCC-------CceEEEEeCCCccccCEEEEEEEECC
Confidence            46789999999998764 458899998755432   11100       13477999999999999999999864

>1pz5_B Heavy chain of FAB (SYA/J6); antibody-antigen structure, peptide-carbohydrate mimicry, VA design, immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1m7d_B* 1m71_B* 1m7i_B* 1r24_B 1uz6_F 1uz8_B* 1clz_H*

Probab=98.92  E-value=6.8e-08  Score=49.58  Aligned_cols=75  Identities=16%  Similarity=0.249  Sum_probs=51.4

Q ss_pred             ceeeecCCCcEEEEEEeeecc--cceeEEeeccc--e--eE-ec---------------ccceEEEEeccccceEEEEEE
Q psy4613           9 QLVGAPIDTDVTLECYVEAYP--KSINYWVRDQG--D--MV-IS---------------SERYEVESISRSIFDFKMRLT   66 (96)
Q Consensus         9 ~~~~~~~g~~~~l~c~~~~~~--~~~~~w~~~~~--~--~~-~~---------------~~~~~~~~~~~~~~~~~~~l~   66 (96)
                      ..+.+..|+.+.|.|.+.+.+  .+.+.|++...  .  .+ ..               ..++.+....   ......|.
T Consensus         8 ~~~~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~---~~~~~~L~   84 (220)
T 1pz5_B            8 GGGLVQPGGSMKLSCVASGFTFSNYWMEWVRQSPEKGLEWVAEIRLKSNNYATHYAESVKGRFTISRDD---SKSSVYLQ   84 (220)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSEEEEEEEETTTEEEEEEEECCGGGTTCEEECGGGTTTEEEEEEG---GGTEEEEE
T ss_pred             CCEEEcCCCeEEEEEEEcCCccCCccEEEEEeCCCCCcEEEEEEEcCCCccccccCcccCCcEEEEEeC---CCCeEEEE
Confidence            456789999999999998765  67899988531  1  11 00               1233332211   01235799


Q ss_pred             EccCCCCCCeeEEEEEecCC
Q psy4613          67 IKKITKYDLGSYKCIAKNSL   86 (96)
Q Consensus        67 i~~~~~~d~g~y~c~~~~~~   86 (96)
                      |.+++..|.|.|.|.+.+..
T Consensus        85 I~~v~~~D~G~Y~C~~~~~~  104 (220)
T 1pz5_B           85 MNNLRAEDTGIYYCTRGGAV  104 (220)
T ss_dssp             ECSCCGGGCEEEEEEEECTT
T ss_pred             EccCCHHHCEEEEEEEecCC
Confidence            99999999999999999864

>1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A 1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B 2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B* 2aq3_A 3mc0_A 3byt_A 3bzd_A ...

Probab=98.92  E-value=2.8e-08  Score=51.72  Aligned_cols=78  Identities=17%  Similarity=0.247  Sum_probs=52.8

Q ss_pred             EEecCceeeecCCCcEEEEEEeeecccceeEEeeccc--ee--Ee--c----------ccceEEEEeccccceEEEEEEE
Q psy4613           4 IHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQG--DM--VI--S----------SERYEVESISRSIFDFKMRLTI   67 (96)
Q Consensus         4 ~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~--~~--~~--~----------~~~~~~~~~~~~~~~~~~~l~i   67 (96)
                      +...+..+.+..|+.+.|.|.+. .+.+.+.|++...  ..  ..  .          ..++.+...    ......|.|
T Consensus         2 v~q~p~~v~v~~G~~v~L~C~~~-~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~----~~~~~~L~I   76 (238)
T 1bec_A            2 VTQSPRNKVAVTGGKVTLSCQQT-NNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRP----SQEQFSLIL   76 (238)
T ss_dssp             EEEECSEEEEETTCCEEEEEEES-SCCSEEEEEEECTTSCEEEEEEEEETTEEEECSCCTTCEEECC----SSSEEEEEE
T ss_pred             cccCCCeeEEeCCCcEEEEEEeC-CCCceEEEEEECCCCCEEEEEEEeCCCcccCCCccceEEEEec----CCCEEEEEE
Confidence            34556677899999999999984 4677899998531  11  10  0          112222110    012467999


Q ss_pred             ccCCCCCCeeEEEEEecCC
Q psy4613          68 KKITKYDLGSYKCIAKNSL   86 (96)
Q Consensus        68 ~~~~~~d~g~y~c~~~~~~   86 (96)
                      .+++..|.|.|.|.+.+..
T Consensus        77 ~~v~~~D~G~Y~C~~~~~~   95 (238)
T 1bec_A           77 ELATPSQTSVYFCASGGGR   95 (238)
T ss_dssp             SSCCGGGCEEEEEEEESCT
T ss_pred             ecCCcccCEEEEEEEecCC
Confidence            9999999999999998863

>2fbj_H IGA-kappa J539 FAB (heavy chain); immunoglobulin; HET: NAG FUC; 1.95A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mcp_H 2mcp_H*

Probab=98.92  E-value=5.4e-08  Score=50.12  Aligned_cols=80  Identities=15%  Similarity=0.219  Sum_probs=52.9

Q ss_pred             EEecCceeeecCCCcEEEEEEeeecc--cceeEEeeccc--e--eEe-c-------------ccceEEEEeccccceEEE
Q psy4613           4 IHVPNQLVGAPIDTDVTLECYVEAYP--KSINYWVRDQG--D--MVI-S-------------SERYEVESISRSIFDFKM   63 (96)
Q Consensus         4 ~~~~~~~~~~~~g~~~~l~c~~~~~~--~~~~~w~~~~~--~--~~~-~-------------~~~~~~~~~~~~~~~~~~   63 (96)
                      +..+ ..+.+..|+.+.|.|.+.+.+  .+.+.|++...  .  .+. .             ..++.+....   .....
T Consensus         4 ~~q~-~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~---~~~~~   79 (220)
T 2fbj_H            4 LLES-GGGLVQPGGSLKLSCAASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDN---AKNSL   79 (220)
T ss_dssp             EEEE-CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECS---SSCEE
T ss_pred             EecC-CCeEecCCCcEEEEEEecCccCCCceEEEEEECCCCCeEEEEEEccCCCceecCCccCCcEEEEeeC---CCCEE
Confidence            3344 347789999999999998755  56899987531  1  111 0             1233332210   01246


Q ss_pred             EEEEccCCCCCCeeEEEEEecCCC
Q psy4613          64 RLTIKKITKYDLGSYKCIAKNSLG   87 (96)
Q Consensus        64 ~l~i~~~~~~d~g~y~c~~~~~~g   87 (96)
                      .|.|.+++..|+|.|.|.+.+..+
T Consensus        80 ~L~I~~v~~~DsG~Y~C~~~~~~~  103 (220)
T 2fbj_H           80 YLQMSKVRSEDTALYYCARLHYYG  103 (220)
T ss_dssp             EEEECSCCGGGCEEEEEEEEETTT
T ss_pred             EEEECCCChhhCEEEEEEEecccc
Confidence            799999999999999999987643

>2xt1_B Camelid VHH 9; viral protein-immune system complex; 1.32A {Vicugna pacos} PDB: 2xv6_B 2xxc_B 2xxm_B

Probab=98.92  E-value=1.6e-07  Score=44.30  Aligned_cols=76  Identities=13%  Similarity=0.217  Sum_probs=49.6

Q ss_pred             EEecCceeeecCCCcEEEEEEeeecc--cceeEEeeccc----eeEe---c-----------ccceEEEEeccccceEEE
Q psy4613           4 IHVPNQLVGAPIDTDVTLECYVEAYP--KSINYWVRDQG----DMVI---S-----------SERYEVESISRSIFDFKM   63 (96)
Q Consensus         4 ~~~~~~~~~~~~g~~~~l~c~~~~~~--~~~~~w~~~~~----~~~~---~-----------~~~~~~~~~~~~~~~~~~   63 (96)
                      +..++ .+.+..|++++|.|.+.+.+  ...+.|++...    ..+.   .           ..++......   .....
T Consensus         6 v~qp~-~~~v~~G~~vtL~C~~s~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~---~~~~~   81 (121)
T 2xt1_B            6 LVESG-GGLVQAGGSLRLSCAASGSFFMSNVMAWYRQAPGKARELIAAIRGGDMSTVYDDSVKGRFTITRDD---DKNIL   81 (121)
T ss_dssp             EEEEC-CEEEETTCCEEEEEEEESSSCCCSEEEEEEECTTSCCEEEEEEETTTCCEEECGGGTTTEEEEEET---TTTEE
T ss_pred             EEcCC-CEEEeCCCCEEEEEEecCeeccCceEEEEEECCCCCcEEEEEEecCCCcceeCcccCCeEEEEEeC---CCCEE
Confidence            34443 57789999999999987533  55799998521    1111   0           1233322211   01246


Q ss_pred             EEEEccCCCCCCeeEEEEEe
Q psy4613          64 RLTIKKITKYDLGSYKCIAK   83 (96)
Q Consensus        64 ~l~i~~~~~~d~g~y~c~~~   83 (96)
                      .|.|.+++.+|+|.|.|.+.
T Consensus        82 sL~I~~v~~~DsG~Y~C~~~  101 (121)
T 2xt1_B           82 YLQMNDLKPEDTAMYYCKAS  101 (121)
T ss_dssp             EEEECSCCGGGCEEEEEEET
T ss_pred             EEEECCCCHHHCEEEEEEEE
Confidence            79999999999999999986

>1dee_B IGM RF 2A2; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1hez_B 1adq_H

Probab=98.92  E-value=5.8e-08  Score=50.09  Aligned_cols=75  Identities=15%  Similarity=0.222  Sum_probs=50.7

Q ss_pred             ceeeecCCCcEEEEEEeeecc--cceeEEeeccc----eeEe--------------cccceEEEEeccccceEEEEEEEc
Q psy4613           9 QLVGAPIDTDVTLECYVEAYP--KSINYWVRDQG----DMVI--------------SSERYEVESISRSIFDFKMRLTIK   68 (96)
Q Consensus         9 ~~~~~~~g~~~~l~c~~~~~~--~~~~~w~~~~~----~~~~--------------~~~~~~~~~~~~~~~~~~~~l~i~   68 (96)
                      ..+.+..|+.+.|.|.+.+.+  .+.+.|++...    ..+.              ...++.+.....   .....|.|.
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~---~~~~sL~I~   84 (223)
T 1dee_B            8 GGGVVQPGKSLRLSCAASGFTFSGYGMHWVRQAPGKGLEWVALISYDESNKYYADSVKGRFTISRDNS---KNTLYLQMN   84 (223)
T ss_dssp             CCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSCCEEECTTTBTTEEEEEETT---TTEEEEEEC
T ss_pred             CCEEEcCCCcEEEEEEecCcccCCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCeEEEEecCC---CCEEEEEEC
Confidence            456789999999999998755  46899997531    1110              012333221100   013579999


Q ss_pred             cCCCCCCeeEEEEEecCC
Q psy4613          69 KITKYDLGSYKCIAKNSL   86 (96)
Q Consensus        69 ~~~~~d~g~y~c~~~~~~   86 (96)
                      +++..|.|.|.|.+.+..
T Consensus        85 ~v~~~D~G~Y~C~~~~~~  102 (223)
T 1dee_B           85 SLRAEDTAVYYCAKVKFY  102 (223)
T ss_dssp             SCCGGGCEEEEEEEESSS
T ss_pred             CCCHHHCEEEEEEEeccc
Confidence            999999999999998864

>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A {Mus musculus}

Probab=98.92  E-value=2.4e-08  Score=52.78  Aligned_cols=77  Identities=14%  Similarity=0.292  Sum_probs=51.4

Q ss_pred             EEecCceeeecCCCcEEEEEEeeecccceeEEeecc--ce--eEe-ccc------------ceEEEEeccccceEEEEEE
Q psy4613           4 IHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQ--GD--MVI-SSE------------RYEVESISRSIFDFKMRLT   66 (96)
Q Consensus         4 ~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~--~~--~~~-~~~------------~~~~~~~~~~~~~~~~~l~   66 (96)
                      +..++..+.+..|+.+.|.|.+.+ +.+.+.|++..  ..  ... ...            ++.....    ......|.
T Consensus        30 v~~~p~~v~v~~G~~v~L~C~~~~-~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~----~~~~~sL~  104 (270)
T 3qib_D           30 VIQTPRYLVKGQGQKAKMRCIPEK-GHPVVFWYQQNKNNEFKFLINFQNQEVLQQIDMTEKRFSAECP----SNSPCSLE  104 (270)
T ss_dssp             CEEECSEEEEETTSCEEEEEECCT-TCCEEEEEEECTTCCEEEEEEEETTEEEEECHHHHHHEEEECC----TTSCEEEE
T ss_pred             EEeCCCeEEEcCCCCEEEEEEecC-CCceEEEEEECCCCCcEEEEEECCCCceecCCccCCcEEEEeC----CCcEEEEE
Confidence            345566778999999999999865 67789998732  11  110 000            2222110    01246799


Q ss_pred             EccCCCCCCeeEEEEEecC
Q psy4613          67 IKKITKYDLGSYKCIAKNS   85 (96)
Q Consensus        67 i~~~~~~d~g~y~c~~~~~   85 (96)
                      |.+++..|.|.|.|.+.+.
T Consensus       105 I~~v~~~D~G~Y~C~~~~~  123 (270)
T 3qib_D          105 IQSSEAGDSALYLCASSLN  123 (270)
T ss_dssp             ESSCCGGGCEEEEEEEESC
T ss_pred             ECCCCHhHCeEEEEEEecC
Confidence            9999999999999999863

>1dn0_B IGM-kappa cold agglutinin (heavy chain); FAB, antibody, human, immune system; 2.28A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1qlr_B* 2j6e_H* 2agj_H* 2h32_H

Probab=98.91  E-value=6e-08  Score=50.38  Aligned_cols=77  Identities=14%  Similarity=0.288  Sum_probs=47.1

Q ss_pred             cCC-CcEEEEEEeeec-ccc-eeEEee-ccceeEecccceEEEEeccccceEEEEEEEccCCC--CCCeeEEEEEecCCC
Q psy4613          14 PID-TDVTLECYVEAY-PKS-INYWVR-DQGDMVISSERYEVESISRSIFDFKMRLTIKKITK--YDLGSYKCIAKNSLG   87 (96)
Q Consensus        14 ~~g-~~~~l~c~~~~~-~~~-~~~w~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~--~d~g~y~c~~~~~~g   87 (96)
                      ..| ..+.|.|.+.+. |.+ .+.|++ ++..+.. ........ ....+...+.|.|.....  .|.|.|.|.+.+..+
T Consensus       138 ~~g~~~v~L~C~~~g~~P~p~~v~W~~~~g~~l~~-~~~~~~~~-~~~~~~~~s~L~i~~~~~~~~d~g~ytC~v~n~~~  215 (232)
T 1dn0_B          138 PSDTSSVAVGCLAQDFLPDSITFSWKYKNNSDISS-TRGFPSVL-RGGKYAATSQVLLPSKDVMAGTDEHVVCKVQHPNG  215 (232)
T ss_dssp             ---CCSEEEEEEEEEEBSSCCEEEEEETTSCEECC-EEECCCEE-ETTEEEEEEEEEECTTCC---CCCEEEEEEECTTC
T ss_pred             CCCCCcEEEEEEEEEEeCCCeEEEEEcCCCCceee-EEECCccc-cCCcEEEEEEEEEcHHHhcccCCCeEEEEEEeCCC
Confidence            367 899999999886 666 899999 6544321 00000000 012222456788888776  778999999999888


Q ss_pred             ceEEE
Q psy4613          88 EVESS   92 (96)
Q Consensus        88 ~~~~~   92 (96)
                      .....
T Consensus       216 ~~~~~  220 (232)
T 1dn0_B          216 NKEKN  220 (232)
T ss_dssp             CEEEE
T ss_pred             Cccee
Confidence            65443

>3qjh_A 5C.C7 alpha chain; immunoglobulin domain, T cell receptor, immune system; 1.90A {Mus musculus} PDB: 3qiu_C* 3qiw_C* 3qjf_A 3qib_C 2ial_A 2iam_C 2ian_D 4e41_D 4e42_A 3rug_E* 3axl_A

Probab=98.91  E-value=2.7e-08  Score=51.12  Aligned_cols=76  Identities=18%  Similarity=0.222  Sum_probs=51.9

Q ss_pred             EEecCceeeecCCCcEEEEEEeeecccceeEEeeccc----eeEe-c------ccceEEEEeccccceEEEEEEEccCCC
Q psy4613           4 IHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQG----DMVI-S------SERYEVESISRSIFDFKMRLTIKKITK   72 (96)
Q Consensus         4 ~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~----~~~~-~------~~~~~~~~~~~~~~~~~~~l~i~~~~~   72 (96)
                      +...+..+.+..|+.+.|.|.+.+. ...+.|++...    ..+. .      ..|+......   ......|.|.+++.
T Consensus         6 V~Q~p~~v~v~~G~svtL~C~~s~~-~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~Rfs~~~~~---~~~~~sL~I~~l~~   81 (205)
T 3qjh_A            6 VEQSPSALSLHEGTGSALRCNFTTT-MRAVQWFRKNSRGSLINLFYLASGTKENGRLKSAFDS---KERYSTLHIRDAQL   81 (205)
T ss_dssp             BEEECSEEEEETTCCEEEEEECSSC-EEEEEEEEEC-CCCEEEEEEESSEEEEETTEEEEEET---TTTEEEEEECSCCG
T ss_pred             EEEeCCEEEEeCCCCEEEEEEEECC-cceEEEEEECCCCCcEEEEEECCCCccCCCEEEEEcC---CCCEEEEEEecccc
Confidence            4455667889999999999998776 56899998531    1111 1      1233222111   11246799999999


Q ss_pred             CCCeeEEEEEe
Q psy4613          73 YDLGSYKCIAK   83 (96)
Q Consensus        73 ~d~g~y~c~~~   83 (96)
                      +|+|.|.|.+.
T Consensus        82 ~DsG~Y~Cav~   92 (205)
T 3qjh_A           82 EDSGTYFCAAE   92 (205)
T ss_dssp             GGCEEEEEEEE
T ss_pred             ccCeEEEEEEE
Confidence            99999999987

>3bae_H WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} SCOP: b.1.1.2 PDB: 3bkc_H 3bkj_H 3bkm_H 3mck_H 2r0w_H* 2iqa_H 2iq9_H 1ggi_H 1ggb_H 1ggc_H 3eys_H* 2ipt_H 2ipu_H 3eyu_H* 2r0z_H* 3rkd_H 1r0a_H* 1n5y_H* 1n6q_H* 1t03_H* ...

Probab=98.91  E-value=2.2e-08  Score=51.78  Aligned_cols=76  Identities=13%  Similarity=0.235  Sum_probs=51.4

Q ss_pred             ceeeecCCCcEEEEEEeeeccc----ceeEEeecc--cee--E-ec------------ccceEEEEeccccceEEEEEEE
Q psy4613           9 QLVGAPIDTDVTLECYVEAYPK----SINYWVRDQ--GDM--V-IS------------SERYEVESISRSIFDFKMRLTI   67 (96)
Q Consensus         9 ~~~~~~~g~~~~l~c~~~~~~~----~~~~w~~~~--~~~--~-~~------------~~~~~~~~~~~~~~~~~~~l~i   67 (96)
                      ..+.+..|+.+.|.|.+.+.+.    +.+.|++..  ...  + ..            ..++.+.....   .....|.|
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~---~~~~~L~I   84 (228)
T 3bae_H            8 GPGLLKPSQTLSLTCSFSGFSIRTSKVGVSWIRQPSGKGLEWLAHIYWDDDKRYNPSLESRLTISKDTS---RDMVFMKI   84 (228)
T ss_dssp             CCSEECTTCCEEEEEEEESSCHHHHCCEEEEEEEETTCCCEEEEEECTTSCEEECTTTGGGEEEEEETT---TTEEEEEE
T ss_pred             CceeecCCCeEEEEEEEeCcccCCCceeEEEEEECCCCCeEEEEEEecCCceeeCcccCCcEEEEEcCC---CCeEEEEE
Confidence            4567899999999999988664    789998753  111  1 10            12333221110   01367999


Q ss_pred             ccCCCCCCeeEEEEEecCCC
Q psy4613          68 KKITKYDLGSYKCIAKNSLG   87 (96)
Q Consensus        68 ~~~~~~d~g~y~c~~~~~~g   87 (96)
                      .+++..|.|.|.|.+.+..|
T Consensus        85 ~~v~~~D~G~Y~C~~~~~~g  104 (228)
T 3bae_H           85 TSVDTADTATYYCARRGFYG  104 (228)
T ss_dssp             CSCCGGGCEEEEEEEEEEST
T ss_pred             cCCCcccCEEEEEEEecCCC
Confidence            99999999999999987643

>1op3_H FAB 2G12, heavy chain; domain-swapped FAB 2G12, anti-carbohydrate antibody, immune system; HET: MAN; 1.75A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1om3_H* 1op5_H* 3oay_M* 1zlu_H* 1zlv_H* 1zlw_H* 2oqj_B 1zls_H* 3ob0_H* 3oau_H* 3oaz_H* 3ghe_H 3eyf_B 3eyo_B 3ghb_H 3c2a_H 1q1j_H 2fl5_H*

Probab=98.91  E-value=5.7e-09  Score=53.90  Aligned_cols=75  Identities=15%  Similarity=0.255  Sum_probs=48.5

Q ss_pred             ecCCCcEEEEEEeeec-ccc-eeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCceE
Q psy4613          13 APIDTDVTLECYVEAY-PKS-INYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVE   90 (96)
Q Consensus        13 ~~~g~~~~l~c~~~~~-~~~-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~~   90 (96)
                      +..|..+.|.|.+.+. |.+ .+.|++++..+....... . ......+...+.|.|......| |.|.|.+.|..+...
T Consensus       140 ~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~~~~~~~~~~-~-~~~~g~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~  216 (225)
T 1op3_H          140 STSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPA-V-LQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTK  216 (225)
T ss_dssp             CCCCCEEEEEEEEEEEBSSCCEEECCTTSCCTTCEECCC-E-ECTTSCEEEEEEEEEEGGGTTC-CCCCEEEEEGGGTEE
T ss_pred             ccCCCcEEEEEEEEeEECCCeEEEEecCCCcCCeEecCc-e-eCCCCCEEEEEEEEEechhcCC-CcEEEEEEcCCCCcc
Confidence            3578999999999886 666 899998764321000000 0 0111222245678888888778 999999999765443

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E

Probab=98.91  E-value=4.6e-09  Score=57.58  Aligned_cols=64  Identities=14%  Similarity=0.110  Sum_probs=51.1

Q ss_pred             eecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCceEE
Q psy4613          12 GAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVES   91 (96)
Q Consensus        12 ~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~~~   91 (96)
                      .+..|+.+.|.|.+.+.|.+.+.|++++.....                ....|.|.++...|.|.|.|.+.+..+....
T Consensus       107 ~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~----------------~~~~L~i~~v~~~d~G~Y~C~a~~~~~~~~~  170 (363)
T 1wio_A          107 HLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQ----------------GGKTLSVSQLELQDSGTWTCTVLQNQKKVEF  170 (363)
T ss_dssp             SEESBSCEEEEEECCTTCCCCEEEECSSSCEEE----------------ESSEEEECSBCGGGCEECEEEEEETTEEEEE
T ss_pred             EEecCCCEEEEEEcCCCCCCeEEEEcCCCcccc----------------cceEEEEeeCChhcCCEEEEEEecCCCeEEE
Confidence            467899999999998889999999988644311                1257899999999999999999987554433

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*

Probab=98.91  E-value=1.6e-09  Score=55.47  Aligned_cols=70  Identities=17%  Similarity=0.083  Sum_probs=47.5

Q ss_pred             ceeeecCC--CcEEEEEEeeecccceeEEeec--cceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEec
Q psy4613           9 QLVGAPID--TDVTLECYVEAYPKSINYWVRD--QGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKN   84 (96)
Q Consensus         9 ~~~~~~~g--~~~~l~c~~~~~~~~~~~w~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~   84 (96)
                      ..+.+..|  +.+.|.|.+.+ |.+.+.|++.  ++.......+....        ....|.|.+++..|.|.|.|.+.+
T Consensus        15 ~~v~v~eG~~~~v~L~C~~~~-p~~~v~w~~~~~~g~~~~~~~~~~~~--------~~~~l~I~~v~~~D~G~Y~C~a~n   85 (213)
T 2x1w_L           15 GVVYITENKNKTVVIPCLGSI-SNLNVSLCARYPEKRFVPDGNRISWD--------SKKGFTIPSYMISYAGMVFCEAKI   85 (213)
T ss_dssp             EEEEECCSTTCEEEECCCBSS-TTCCEEEEEETTTEEECCCSSSCEEE--------TTTEEEEEGGGTTTCSEEEEEEC-
T ss_pred             eEEEEecCCCccEEEeeccCC-CCcEEEEEhhcCCCccccCCCccccc--------CCccEEEccCChhcCceEEEEEEE
Confidence            56678889  99999999876 6788999875  33332222222211        123589999999999999999987


Q ss_pred             CCC
Q psy4613          85 SLG   87 (96)
Q Consensus        85 ~~g   87 (96)
                      ..+
T Consensus        86 ~~~   88 (213)
T 2x1w_L           86 NDE   88 (213)
T ss_dssp             ---
T ss_pred             CCe
Confidence            433

>3noi_A Natural cytotoxicity triggering receptor 3; immune system, innate immunity, immunoglobulin-like I2 type natural killer cell activation; HET: 1PG; 1.84A {Homo sapiens} PDB: 3pv6_B*

Probab=98.91  E-value=3.6e-09  Score=49.85  Aligned_cols=77  Identities=22%  Similarity=0.292  Sum_probs=49.7

Q ss_pred             CceeeecCCCcEEEEEEeeecc----cceeEEeecc---ceeEe-----cccceEEEEeccccceEEEEEEEccCCCCCC
Q psy4613           8 NQLVGAPIDTDVTLECYVEAYP----KSINYWVRDQ---GDMVI-----SSERYEVESISRSIFDFKMRLTIKKITKYDL   75 (96)
Q Consensus         8 ~~~~~~~~g~~~~l~c~~~~~~----~~~~~w~~~~---~~~~~-----~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~   75 (96)
                      +..+.+..|+++.|.|.+...+    ...+.|++..   .....     ...++...............|.|.+++..|+
T Consensus        14 p~~v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~~~g~~~~~~~~~~~~R~~~~~~~~~~~~~~~sL~I~~v~~~Ds   93 (120)
T 3noi_A           14 PPEIRTLEGSSAFLPCSFNASQGRLAIGSVTWFRDEVVPGKEVRNGTPEFRGRLAPLASSRFLHDHQAELHIRDVRGHDA   93 (120)
T ss_dssp             CSEEEEETTSCEEECCEECCCTTSCCCEEEEEEESSCSTTCBCCTTCTTTTTCEECCCHHHHHTTCBCCEEESSCCGGGC
T ss_pred             CCEEEEEcCCCEEEEeeecCCCCCCceeEEEEEeccCCCCceecccccccCCcEEeecccccccCCcEEEEEecCChhhC
Confidence            4567789999999999987654    4579999874   11111     1122222110000011235799999999999


Q ss_pred             eeEEEEEec
Q psy4613          76 GSYKCIAKN   84 (96)
Q Consensus        76 g~y~c~~~~   84 (96)
                      |.|.|.+..
T Consensus        94 G~Y~C~v~~  102 (120)
T 3noi_A           94 SIYVCRVEV  102 (120)
T ss_dssp             EEEEEEEEE
T ss_pred             EEEEEEEEE
Confidence            999999874

>3liz_H 4C3 monoclonal antibody heavy chain; hydrolase-immune system complex; HET: NAG BMA MAN; 1.80A {Mus musculus} PDB: 3rvv_D* 3rvu_D 3rvt_D* 3rvw_D* 3rvx_D 1lo4_H 1ub6_H 3r06_B 3r08_H

Probab=98.91  E-value=2.5e-08  Score=52.40  Aligned_cols=76  Identities=17%  Similarity=0.263  Sum_probs=48.2

Q ss_pred             ecCCCcEEEEEEeee-cccc-eeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCceE
Q psy4613          13 APIDTDVTLECYVEA-YPKS-INYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVE   90 (96)
Q Consensus        13 ~~~g~~~~l~c~~~~-~~~~-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~~   90 (96)
                      +..|..+.|.|.+.+ .|.+ .+.|++++.......... .. .. ..+...+.|.|......| |.|.|.+.+..+...
T Consensus       136 ~~~g~~v~L~C~~~g~~P~~~~v~W~~~~~~~~~~~~~~-~~-~~-g~~~~~s~L~i~~~~~~d-g~ytC~v~~~~~~~~  211 (253)
T 3liz_H          136 AQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPA-VL-QS-DLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTK  211 (253)
T ss_dssp             ---CCEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCC-EE-ET-TEEEEEEEEEEETTSTTT-SCCEEEEEEGGGTEE
T ss_pred             cCCCCcEEEEEEEeeEeCCCeEEEEEeCCeecceEeCCc-cc-cC-CeEEEEEEEEEcHHHCCC-ceEEEEEEECCCCcc
Confidence            456899999999988 5666 799998764221000000 00 00 122244778999998889 999999999877554


Q ss_pred             EE
Q psy4613          91 SS   92 (96)
Q Consensus        91 ~~   92 (96)
                      ..
T Consensus       212 ~~  213 (253)
T 3liz_H          212 VD  213 (253)
T ss_dssp             EE
T ss_pred             eE
Confidence            33

>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A

Probab=98.90  E-value=5.6e-09  Score=56.49  Aligned_cols=74  Identities=18%  Similarity=0.258  Sum_probs=47.2

Q ss_pred             CcEEEEEEeeec-c-cceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCceEE
Q psy4613          17 TDVTLECYVEAY-P-KSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVES   91 (96)
Q Consensus        17 ~~~~l~c~~~~~-~-~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~~~   91 (96)
                      +.+.|.|.+.+. | .+.+.|++++..+............ ...+...+.|.|......|.|.|.|.+.+..+....
T Consensus        25 ~~v~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~-~g~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~  100 (323)
T 2wqr_A           25 PTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTASTTQE-GELASTQSELTLSQKHWLSDRTYTCQVTYQGHTFED  100 (323)
T ss_dssp             SEEEEEEEEEEECCCCEEEEEEETTEECCGGGEEEEEEEE-TTEEEEEEEEEEEHHHHHTTCCEEEEEEETTEEEEE
T ss_pred             CcEEEEEEEeCeECCCeEEEEEECCEEcccceecCCcCcc-CCcEEEEEEEEEcHHHcCCCCcEEEEEEeCCCCcce
Confidence            589999999885 3 4689999986554311111111111 112223456777777777999999999998765443

>2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system; 2.88A {Mus musculus}

Probab=98.90  E-value=4.8e-08  Score=52.33  Aligned_cols=75  Identities=13%  Similarity=0.192  Sum_probs=50.5

Q ss_pred             ceeeecCCCcEEEEEEeeecc--cceeEEeeccc----eeEec--------------ccceEEEEeccccceEEEEEEEc
Q psy4613           9 QLVGAPIDTDVTLECYVEAYP--KSINYWVRDQG----DMVIS--------------SERYEVESISRSIFDFKMRLTIK   68 (96)
Q Consensus         9 ~~~~~~~g~~~~l~c~~~~~~--~~~~~w~~~~~----~~~~~--------------~~~~~~~~~~~~~~~~~~~l~i~   68 (96)
                      ..+.+..|+++.|.|.+.+.+  .+.+.|++...    ..+..              ..++.+....   ......|.|.
T Consensus        30 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~---~~~~~sL~I~  106 (291)
T 2gki_A           30 GPELVKPGASVKMSCKASGYTFTSYVMHWVKQKPGQGLEWIGYINPYNDGTKYNEKFKGKATLTSDK---SSSTAYMELS  106 (291)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECGGGBTTBCEEEEG---GGTEEEEEEC
T ss_pred             CcEEecCCCCEEEEEeccCCcccccEEEEEEECCCCCcEEEEEEecCCCccccCcccCCCEEEEEeC---CCCEEEEEEC
Confidence            356788999999999988765  57899998531    11100              1222221110   0023679999


Q ss_pred             cCCCCCCeeEEEEEecCC
Q psy4613          69 KITKYDLGSYKCIAKNSL   86 (96)
Q Consensus        69 ~~~~~d~g~y~c~~~~~~   86 (96)
                      +++..|+|.|.|.+.+..
T Consensus       107 ~v~~~DsG~Y~C~~~~~~  124 (291)
T 2gki_A          107 SLTSEDSAVYYCARGAYK  124 (291)
T ss_dssp             SCCGGGCEEEEEEEECGG
T ss_pred             cCCHHHCEEEEEEEeccc
Confidence            999999999999998863

>3mbe_C I-AG7; T cell receptor, histocompatability antigen, MHC class II, I immune system; HET: NAG; 2.89A {Mus musculus}

Probab=98.90  E-value=5.9e-08  Score=50.63  Aligned_cols=78  Identities=19%  Similarity=0.249  Sum_probs=53.5

Q ss_pred             eEEecCceeeecCCCcEEEEEEeeecccceeEEeecc--ce--eE-e------cccceEEEEeccccceEEEEEEEccCC
Q psy4613           3 VIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQ--GD--MV-I------SSERYEVESISRSIFDFKMRLTIKKIT   71 (96)
Q Consensus         3 ~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~--~~--~~-~------~~~~~~~~~~~~~~~~~~~~l~i~~~~   71 (96)
                      .+...+..+.+..|+.+.|.|.+.+. ...+.|++..  ..  .+ .      ...|+......   ......|.|.+++
T Consensus         3 ~V~Q~p~~v~v~~G~sVtL~C~~s~~-~~~v~Wyrq~pg~~~~~l~~~~~~~~~~~Rfs~~~~~---~~~~~sLtI~~lq   78 (229)
T 3mbe_C            3 PVEQNPPALSLYEGADSGLRCNFSTT-MKSVQWFQQNHRGRLITLFYLAQGTKENGRLKSTFNS---KERYSTLHIKDAQ   78 (229)
T ss_dssp             CEEEECSEEEEETTCCEEEEEEESSC-CSCEEEEEECSSSCBCCCEEESSEEEEETTEEEEEET---TTTEEEEEECSCC
T ss_pred             cEEEcCCEEEEEcCCCEEEEEEEeCC-CcEEEEEEECCCCCcEEEEEeCCCCccCCCEEEEECC---CCCEEEEEEECCc
Confidence            35566777889999999999998876 6689999752  11  11 1      11233322111   1124679999999


Q ss_pred             CCCCeeEEEEEec
Q psy4613          72 KYDLGSYKCIAKN   84 (96)
Q Consensus        72 ~~d~g~y~c~~~~   84 (96)
                      .+|+|.|.|.+..
T Consensus        79 ~~DSG~Y~Ca~~~   91 (229)
T 3mbe_C           79 LEDSGTYFCAAED   91 (229)
T ss_dssp             STTCBEEEEEEEC
T ss_pred             ccCCCCEEEEEEe
Confidence            9999999999875

>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin, glycosylation, immune system; HET: NAG FUC MAN GAL; 2.13A {Mus musculus}

Probab=98.89  E-value=4.4e-09  Score=54.12  Aligned_cols=73  Identities=16%  Similarity=0.175  Sum_probs=45.5

Q ss_pred             CCCcEEEEEEeee-cccc-eeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCc
Q psy4613          15 IDTDVTLECYVEA-YPKS-INYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGE   88 (96)
Q Consensus        15 ~g~~~~l~c~~~~-~~~~-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~   88 (96)
                      .|..+.|.|.+.+ .|.+ .+.|++++..+. ..............+...+.|.+......|.|.|.|.+.|....
T Consensus       131 ~g~~~~L~C~~~g~~P~~~~v~W~k~g~~~~-~~~~~~~~~~~~gt~~~~s~l~v~~~~~~d~g~YtC~a~n~~l~  205 (218)
T 2rgs_A          131 SRKDVSLTCLVVGFNPGDISVEWTSNGHTEE-NYKDTAPVLDSDGSYFIYSKLNMKTSKWEKTDSFSCNVRHEGLK  205 (218)
T ss_dssp             TSSEEEEEEEEEEEBSSCCEEEEEETTEEEC-CEEECCCEECTTSCEEEEEEEEEEHHHHHHCSCEEEEEECTTSG
T ss_pred             cCCceEEEEEEEeeeCCCcEEEEEECCEecc-CceecccEECCCCCEEEEEEEEECHHHcCCCCeEEEEEEcCCCC
Confidence            4899999999998 5665 899999876542 11111111111122334455666655555689999999997553

>3fku_X Neutralizing antibody F10; influenza, hemagglutinin, SCFV, F membrane, envelope protein, fusion protein, membrane, trans virion; HET: NAG BMA; 3.20A {Homo sapiens}

Probab=98.89  E-value=2.3e-08  Score=53.31  Aligned_cols=79  Identities=13%  Similarity=0.143  Sum_probs=52.7

Q ss_pred             eEEecCceeeecCCCcEEEEEEeeec--ccceeEEeeccce-----eEec-------------ccceEEEEeccccceEE
Q psy4613           3 VIHVPNQLVGAPIDTDVTLECYVEAY--PKSINYWVRDQGD-----MVIS-------------SERYEVESISRSIFDFK   62 (96)
Q Consensus         3 ~~~~~~~~~~~~~g~~~~l~c~~~~~--~~~~~~w~~~~~~-----~~~~-------------~~~~~~~~~~~~~~~~~   62 (96)
                      .+.. +..+.+..|+.+.|.|.+.+.  +.+.+.|++....     +...             ..++.+....   ....
T Consensus         3 ~v~q-p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~---~~~~   78 (280)
T 3fku_X            3 QLVQ-SGAEVKKPGSSVKVSCTSSEVTFSSFAISWVRQAPGQGLEWLGGISPMFGTPNYAQKFQGRVTITADQ---STRT   78 (280)
T ss_dssp             CEEC-CCCCEECTTCCEEEEEEECCSCCTTSCEEECCBCSSSCCCCCEEECTTTCCEEECGGGTTTCEEEEET---TTTE
T ss_pred             eEEc-CCCEEECCCCcEEEEEEeeccCCCCeEEEEEEeCCCCCCEEEEEEeccCCccccCcccCCcEEEEEeC---CCCE
Confidence            4555 566778999999999998775  4578999874211     0000             1133322111   0123


Q ss_pred             EEEEEccCCCCCCeeEEEEEecC
Q psy4613          63 MRLTIKKITKYDLGSYKCIAKNS   85 (96)
Q Consensus        63 ~~l~i~~~~~~d~g~y~c~~~~~   85 (96)
                      ..|.|.+++..|+|.|.|.+.+.
T Consensus        79 ~sL~I~~v~~~DsG~Y~C~~~~~  101 (280)
T 3fku_X           79 AYMDLRSLRSEDTAVYYCARSPS  101 (280)
T ss_dssp             EEEEECSCCSTTCEECCEEECSS
T ss_pred             EEEEECCCChhhCEEEEEEEecC
Confidence            57999999999999999999876

>2p45_B Antibody CAB-RN05; seMet phasing, camelid single-domain antibody, VHH, RNAse A, yeast surface display, hydrolase/immune system complex; 1.10A {Camelus dromedarius} PDB: 2p46_B 2p47_B 2p48_B 2p44_B 2p49_B 2p42_B 2p43_B 1bzq_K 3qsk_B 2p4a_B 1op9_A 1sjx_A 3qxt_A* 3qxu_A 3eba_A

Probab=98.89  E-value=7.1e-08  Score=45.57  Aligned_cols=78  Identities=17%  Similarity=0.193  Sum_probs=50.9

Q ss_pred             EEecCceeeecCCCcEEEEEEeeecc--cceeEEeeccc----eeE-e--c-----------ccceEEEEeccccceEEE
Q psy4613           4 IHVPNQLVGAPIDTDVTLECYVEAYP--KSINYWVRDQG----DMV-I--S-----------SERYEVESISRSIFDFKM   63 (96)
Q Consensus         4 ~~~~~~~~~~~~g~~~~l~c~~~~~~--~~~~~w~~~~~----~~~-~--~-----------~~~~~~~~~~~~~~~~~~   63 (96)
                      +..++ .+.+..|++++|.|.+.+..  ...+.|++...    ..+ .  .           ..++......   .....
T Consensus         6 v~q~~-~~~~~~G~~vtL~C~~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~---~~~~~   81 (123)
T 2p45_B            6 MVESG-GGLVQAGGSLRLSCAASGYAYTYIYMGWFRQAPGKEREGVAAMDSGGGGTLYADSVKGRMTISRDK---GKNTV   81 (123)
T ss_dssp             EEEEC-CEEEETTCCEEEEEEEESCSSCCSEEEEEEECTTSCCEEEEEEETTSCSCEECTTTBTTEEEECCT---TSSEE
T ss_pred             EEccC-CEEEeCCCCEEEEEEecCccCcCcEEEEEEECCCCCcEEEEEEecCCCceEeCcccCCeEEEEEeC---CCCEE
Confidence            44444 46789999999999987532  56799987531    111 1  0           1123222110   11346


Q ss_pred             EEEEccCCCCCCeeEEEEEecC
Q psy4613          64 RLTIKKITKYDLGSYKCIAKNS   85 (96)
Q Consensus        64 ~l~i~~~~~~d~g~y~c~~~~~   85 (96)
                      .|.|.+++.+|+|.|.|.+.+.
T Consensus        82 ~L~I~~~~~~Dsg~Y~C~~~~~  103 (123)
T 2p45_B           82 YLQMDSLKPEDTATYYCAAGGY  103 (123)
T ss_dssp             EEEESSCCGGGCEEEEEEESSC
T ss_pred             EEEECCCCHHHCEEEEEEEEec
Confidence            7999999999999999998763

>1dlf_H Anti-dansyl immunoglobulin IGG2A(S); FV fragment; 1.45A {Mus musculus} SCOP: b.1.1.1 PDB: 2dlf_H 1wz1_H* 3iy5_B 2uud_H*

Probab=98.89  E-value=1.9e-07  Score=44.16  Aligned_cols=78  Identities=15%  Similarity=0.248  Sum_probs=50.5

Q ss_pred             EEecCceeeecCCCcEEEEEEeeecc--cceeEEeeccc----eeE-ec---------------ccceEEEEeccccceE
Q psy4613           4 IHVPNQLVGAPIDTDVTLECYVEAYP--KSINYWVRDQG----DMV-IS---------------SERYEVESISRSIFDF   61 (96)
Q Consensus         4 ~~~~~~~~~~~~g~~~~l~c~~~~~~--~~~~~w~~~~~----~~~-~~---------------~~~~~~~~~~~~~~~~   61 (96)
                      +..++ .+.+..|++++|.|...+..  ...+.|++...    ..+ ..               ..++......   ...
T Consensus         4 l~q~~-~~~~~~G~~vtL~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~y~~~~~~~~~~~~~~~~Rf~~~~~~---~~~   79 (124)
T 1dlf_H            4 LEESG-GGLVQPGGSMKLSCATSGFTFSDAWMDWVRQSPEKGLEWVAEIRNKANNHATYYAESVKGRFTISRDD---SKR   79 (124)
T ss_dssp             EEEEC-CCEECTTCCEEEEEEEESSCTTTCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEET---TTT
T ss_pred             EEccC-CEEEcCCCCEEEEeECCCccCCCCeEEEEEECCCCCceEEEEEEeccCCCceeeCcccCCcEEEEEcC---CCC
Confidence            44443 56789999999999987532  45799987531    111 11               1122222111   012


Q ss_pred             EEEEEEccCCCCCCeeEEEEEecC
Q psy4613          62 KMRLTIKKITKYDLGSYKCIAKNS   85 (96)
Q Consensus        62 ~~~l~i~~~~~~d~g~y~c~~~~~   85 (96)
                      ...|.|.+++.+|+|.|.|.+.+.
T Consensus        80 ~~~L~I~~~~~~Dsg~Y~C~~~~~  103 (124)
T 1dlf_H           80 RVYLQMNTLRAEDTGIYYCTGIYY  103 (124)
T ss_dssp             EEEEEECSCCGGGCEEEEEEEEBT
T ss_pred             EEEEEECCCCHHHCEEEEEEEEeC
Confidence            457999999999999999998864

>3bn9_D E2 FAB heavy chain; antibody-protease complex, protein-protein complex, enzyme- inhibitor complex, disease mutation, glycoprotein, hydrolase; 2.17A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 3kr3_H 2xtj_E

Probab=98.89  E-value=6.3e-08  Score=51.22  Aligned_cols=80  Identities=14%  Similarity=0.186  Sum_probs=52.8

Q ss_pred             EEecCceeeecCCCcEEEEEEeeecc--cceeEEeeccc--ee--Ee--------------cccceEEEEeccccceEEE
Q psy4613           4 IHVPNQLVGAPIDTDVTLECYVEAYP--KSINYWVRDQG--DM--VI--------------SSERYEVESISRSIFDFKM   63 (96)
Q Consensus         4 ~~~~~~~~~~~~g~~~~l~c~~~~~~--~~~~~w~~~~~--~~--~~--------------~~~~~~~~~~~~~~~~~~~   63 (96)
                      +..++ .+.+..|+.+.|.|.+.+.+  .+.+.|++...  .+  +.              ...++.+....   .....
T Consensus         4 l~qp~-~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~---~~~~~   79 (257)
T 3bn9_D            4 LVQSG-GGLVKPGGSLRLSCAASGFTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDN---SKNTL   79 (257)
T ss_dssp             EEEEC-CEEECTTCEEEEEEEEESSCGGGCCEEEEEECTTSCEEEEEEECSSSCCEEECGGGTTTEEEEEET---TTTEE
T ss_pred             EEccC-CEEEcCCCcEEEEEEeccccCCCceEEEEEECCCCCeEEEEEEecCCCceecCcccCCceEEEecC---CCCEE
Confidence            34443 45689999999999998765  56899987531  11  10              01233322110   01235


Q ss_pred             EEEEccCCCCCCeeEEEEEecCCC
Q psy4613          64 RLTIKKITKYDLGSYKCIAKNSLG   87 (96)
Q Consensus        64 ~l~i~~~~~~d~g~y~c~~~~~~g   87 (96)
                      .|.|.+++..|.|.|.|.+.+..|
T Consensus        80 sL~I~~v~~~DsG~Y~C~~~~~~g  103 (257)
T 3bn9_D           80 YLQMSSLRAEDTAVYYCARPYLTY  103 (257)
T ss_dssp             EEEEESCCGGGCEEEEEEEECCSS
T ss_pred             EEEECCCChhhCEEEEEEEecCCC
Confidence            799999999999999999998654

>1mfa_H IGG1-lambda Se155-4 FAB (heavy chain); immunoglobulin; HET: GLA MMA; 1.70A {Mus musculus} SCOP: b.1.1.1 PDB: 3iy2_B

Probab=98.88  E-value=2e-07  Score=43.86  Aligned_cols=78  Identities=13%  Similarity=0.285  Sum_probs=50.5

Q ss_pred             EEecCceeeecCCCcEEEEEEeeecc--cceeEEeeccc----eeEe--c------------ccceEEEEeccccceEEE
Q psy4613           4 IHVPNQLVGAPIDTDVTLECYVEAYP--KSINYWVRDQG----DMVI--S------------SERYEVESISRSIFDFKM   63 (96)
Q Consensus         4 ~~~~~~~~~~~~g~~~~l~c~~~~~~--~~~~~w~~~~~----~~~~--~------------~~~~~~~~~~~~~~~~~~   63 (96)
                      +..++ .+.+..|+++.|.|.+.+..  ...+.|++...    ..+.  .            ..++......   .....
T Consensus         4 v~qp~-~~~~~~G~~v~L~C~~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~---~~~~~   79 (120)
T 1mfa_H            4 VQQSG-TVVARPGASVKMSCKASGYTFTNYWMHWIKQRPGQGLEWIGAIYPGNSATFYNHKFRAKTKLTAVT---STTTA   79 (120)
T ss_dssp             EEECC-CEEECTTCCEEEEEEEESSCGGGSEEEEEEEETTTEEEEEEEEETTTTEEEECTTTTTTEEEEEET---TTTEE
T ss_pred             EECCC-CEEEeCCCCEEEEEEeeCccccccEEEEEEECCCCCcEEEEEEecCCCceEECcccCCcEEEEEeC---CCCEE
Confidence            44444 46789999999999987533  45799987421    1111  0            1233322111   01236


Q ss_pred             EEEEccCCCCCCeeEEEEEecC
Q psy4613          64 RLTIKKITKYDLGSYKCIAKNS   85 (96)
Q Consensus        64 ~l~i~~~~~~d~g~y~c~~~~~   85 (96)
                      .|.|.+++..|+|.|.|.+.+.
T Consensus        80 ~L~I~~~~~~Dsg~Y~C~~~~~  101 (120)
T 1mfa_H           80 YMELSSLTSEDSAVYYCTRGGH  101 (120)
T ss_dssp             EEEECSCCGGGCEEEEEEEEET
T ss_pred             EEEECCCCHHHCEEEEEEEecC
Confidence            7999999999999999998765

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A

Probab=98.88  E-value=7.9e-09  Score=52.08  Aligned_cols=73  Identities=16%  Similarity=0.186  Sum_probs=51.3

Q ss_pred             ceeeecCCCcEEEEEEee--ecccceeEEee--ccceeEe---------cccceEEEEeccccceEEEEEEEccCCCCCC
Q psy4613           9 QLVGAPIDTDVTLECYVE--AYPKSINYWVR--DQGDMVI---------SSERYEVESISRSIFDFKMRLTIKKITKYDL   75 (96)
Q Consensus         9 ~~~~~~~g~~~~l~c~~~--~~~~~~~~w~~--~~~~~~~---------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~   75 (96)
                      ..+....|+++.|.|...  +.+.+.+.|++  ++..+..         ...++.+.        ...+|.|.+++..|+
T Consensus         7 ~~v~g~~G~sv~L~~~~~~~~~~~~~i~W~k~~~~~~i~~~~~~~~~~~~~~R~~~~--------~ngsL~I~~v~~~Ds   78 (182)
T 1hnf_A            7 LETWGALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLF--------KNGTLKIKHLKTDDQ   78 (182)
T ss_dssp             EEEEEETTSCEEECCTTCCCCSSEEEEEEEEGGGCCEEEEECGGGCEEESCTTEEEC--------TTSCEEECSCCGGGC
T ss_pred             cEEEEecCCCEEEeCCcccccCcCCEEEEEECCCCcEEEEEeCccCCCCCCCeEEEC--------CCCCEEECCCChhhC
Confidence            446678899999999543  34567899998  6544321         12232221        124799999999999


Q ss_pred             eeEEEEEecCCCce
Q psy4613          76 GSYKCIAKNSLGEV   89 (96)
Q Consensus        76 g~y~c~~~~~~g~~   89 (96)
                      |.|.|.+.+..|..
T Consensus        79 G~Y~c~~~n~~g~~   92 (182)
T 1hnf_A           79 DIYKVSIYDTKGKN   92 (182)
T ss_dssp             EEEEEEEEETTSCE
T ss_pred             EEEEEEEEeCCCce
Confidence            99999999987764

>1zvh_A Immunoglobulin heavy chain antibody variable domain; beta sandwich, immunoglobulin fold, protein-protein heterocomplex; 1.50A {Camelus dromedarius} SCOP: b.1.1.1 PDB: 3dwt_A 1g6v_K 1zv5_A 1kxq_E

Probab=98.88  E-value=9e-08  Score=45.99  Aligned_cols=78  Identities=18%  Similarity=0.249  Sum_probs=50.7

Q ss_pred             EEecCceeeecCCCcEEEEEEeeecc--cceeEEeeccc----eeE-e-c------------ccceEEEEeccccceEEE
Q psy4613           4 IHVPNQLVGAPIDTDVTLECYVEAYP--KSINYWVRDQG----DMV-I-S------------SERYEVESISRSIFDFKM   63 (96)
Q Consensus         4 ~~~~~~~~~~~~g~~~~l~c~~~~~~--~~~~~w~~~~~----~~~-~-~------------~~~~~~~~~~~~~~~~~~   63 (96)
                      +..++ .+.+..|++++|.|.+.+..  ...+.|++...    ..+ . .            ..++......   .....
T Consensus         4 v~qp~-~~~v~~G~~vtL~C~~s~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~Rf~~~~~~---~~~~~   79 (134)
T 1zvh_A            4 LVESG-GGSVQAGGSLRLSCAASGYIASINYLGWFRQAPGKEREGVAAVSPAGGTPYYADSVKGRFTVSLDN---AENTV   79 (134)
T ss_dssp             EEEEC-CEEECTTCCEEEEEEEEESGGGEEEEEEEEECTTSCCEEEEEECTTTCCEEECTTTBTTBEEEEET---TTTEE
T ss_pred             EEcCC-CEEEccCCCEEEEEEeCCCCcCCcEEEEEEECCCCCCEEEEEEEcCCCceecCcccCCcEEEEEcC---CCCEE
Confidence            34444 46789999999999987643  45789987531    111 1 0            1233322211   01235


Q ss_pred             EEEEccCCCCCCeeEEEEEecC
Q psy4613          64 RLTIKKITKYDLGSYKCIAKNS   85 (96)
Q Consensus        64 ~l~i~~~~~~d~g~y~c~~~~~   85 (96)
                      .|.|.+++.+|+|.|.|.+.+.
T Consensus        80 sL~I~~~~~~DsG~Y~C~~~~~  101 (134)
T 1zvh_A           80 YLQMNSLKPEDTALYYCAAARQ  101 (134)
T ss_dssp             EEEECSCCGGGCEEEEEEEEES
T ss_pred             EEEECCCCHHHCEEEEEEEecC
Confidence            7999999999999999998765

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A

Probab=98.88  E-value=1.4e-08  Score=51.78  Aligned_cols=78  Identities=21%  Similarity=0.195  Sum_probs=52.1

Q ss_pred             ecCceeeecCCCcEEEEEEeeec-------ccceeEEeecccee-----Ee-----------cccceEEEEeccccceEE
Q psy4613           6 VPNQLVGAPIDTDVTLECYVEAY-------PKSINYWVRDQGDM-----VI-----------SSERYEVESISRSIFDFK   62 (96)
Q Consensus         6 ~~~~~~~~~~g~~~~l~c~~~~~-------~~~~~~w~~~~~~~-----~~-----------~~~~~~~~~~~~~~~~~~   62 (96)
                      ..+..+.+..|+.+.|.|.+...       +.+.+.|++.+...     ..           ...++.+....   ....
T Consensus         5 ~~p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~---~~~~   81 (214)
T 2zg1_A            5 QVQKSVTVQEGLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPETQGRFRLLGDV---QKKN   81 (214)
T ss_dssp             ECCSEEEEETTCCEEECCEEECCCCCCSCCCCEEEEEEETTCCGGGCCBSEESCTTSCBCTTTTTTEEECSCG---GGTB
T ss_pred             eCCcEEEEecCccEEEeeeeecCCcccCCCCceEEEEEecCCCCcccceEecCCcccccCccccCceEEeccC---CCCe
Confidence            34566788999999999998754       46789999875321     10           01222221100   0012


Q ss_pred             EEEEEccCCCCCCeeEEEEEecCC
Q psy4613          63 MRLTIKKITKYDLGSYKCIAKNSL   86 (96)
Q Consensus        63 ~~l~i~~~~~~d~g~y~c~~~~~~   86 (96)
                      ..|.|.+++..|.|.|.|.+.+..
T Consensus        82 ~sL~I~~v~~~D~G~Y~C~~~~~~  105 (214)
T 2zg1_A           82 CSLSIGDARMEDTGSYFFRVERGR  105 (214)
T ss_dssp             CCEEECSCCGGGCEEEEEEEEETT
T ss_pred             EEEEEccCCHhhCceEEEEEEcCC
Confidence            469999999999999999998765

>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A

Probab=98.88  E-value=9.1e-09  Score=55.67  Aligned_cols=78  Identities=19%  Similarity=0.237  Sum_probs=50.8

Q ss_pred             ceeeecCCCcEEEEEEeeec-ccc---eeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEec
Q psy4613           9 QLVGAPIDTDVTLECYVEAY-PKS---INYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKN   84 (96)
Q Consensus         9 ~~~~~~~g~~~~l~c~~~~~-~~~---~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~   84 (96)
                      ....+..|+.+.|.|.+.+. |.+   .+.|+++++........... ......+.....|.|.++...|.|.|.|.+.+
T Consensus       121 ~~~~v~~G~~v~L~C~~~g~~P~p~~~~i~W~k~~g~~~~~~~~~~~-~~~~g~~~~~~~L~I~~~~~~D~G~Y~C~a~n  199 (323)
T 2wqr_A          121 SPFDLFIRKSPTITCLVVDLAPSKGTVQLTWSRASGKPVNHSTRKEE-KQRNGTLTVTSTLPVGTRDWIEGETYQCRVTH  199 (323)
T ss_dssp             CHHHHHTSSCCEEEEEEEEECCCSSCCEEEEEETTCCCCCCCCCEEE-ECTTSCEEEEEEEECCHHHHHTTCCEEEEEEC
T ss_pred             CHHHhccCCeEEEEEEEeccCCCCCceEEEEEECCCcccccccCCCc-cCCCCCEEEEEEEEECHHHccCCCCEEEEEEC
Confidence            33346779999999999875 455   89999875443211111110 01111111346799999999999999999998


Q ss_pred             CCC
Q psy4613          85 SLG   87 (96)
Q Consensus        85 ~~g   87 (96)
                      ..+
T Consensus       200 ~~~  202 (323)
T 2wqr_A          200 PHL  202 (323)
T ss_dssp             TTS
T ss_pred             CCC
Confidence            764

>2ak4_D SB27 T cell receptor alpha chain; bulged epitopes, PMHC/TCR complex, immune system; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 3kxf_D 3nfj_I 3ffc_D

Probab=98.87  E-value=1.2e-07  Score=48.85  Aligned_cols=80  Identities=19%  Similarity=0.264  Sum_probs=53.2

Q ss_pred             eEEecCceeeecCCCcEEEEEEeeecccc-eeEEeeccc----eeE-ec---------ccceEEEEeccccceEEEEEEE
Q psy4613           3 VIHVPNQLVGAPIDTDVTLECYVEAYPKS-INYWVRDQG----DMV-IS---------SERYEVESISRSIFDFKMRLTI   67 (96)
Q Consensus         3 ~~~~~~~~~~~~~g~~~~l~c~~~~~~~~-~~~w~~~~~----~~~-~~---------~~~~~~~~~~~~~~~~~~~l~i   67 (96)
                      .+...+..+.+..|+.+.|.|.+.+.... .+.|++...    ..+ ..         ..|+......   ......|.|
T Consensus         5 ~v~Q~p~~v~v~~G~~vtL~C~~s~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~Rf~~~~~~---~~~~~~L~I   81 (211)
T 2ak4_D            5 KVTQAQTEISVVEKEDVTLDCVYETRDTTYYLFWYKQPPSGELVFLIRRNSFDEQNEISGRYSWNFQK---STSSFNFTI   81 (211)
T ss_dssp             EEECCCCEEEEETTCCEEECCEEECSCSSCEEEEEEECTTCCCEEEEEEETTSCSEEEETTEEEEEET---TTTEEEEEE
T ss_pred             ceEEeCCEEEEecCCCEEEEEEecCCcCceeEEEEEECCCCccEEEEEECCCcCccCcCCCEEEEEcC---CCCEEEEEE
Confidence            35566677889999999999998764444 799987531    111 10         1222221110   012367999


Q ss_pred             ccCCCCCCeeEEEEEecC
Q psy4613          68 KKITKYDLGSYKCIAKNS   85 (96)
Q Consensus        68 ~~~~~~d~g~y~c~~~~~   85 (96)
                      .+++..|.|.|.|.+.+.
T Consensus        82 ~~~~~~Dsg~Y~C~~~~~   99 (211)
T 2ak4_D           82 TASQVVDSAVYFCALSGF   99 (211)
T ss_dssp             SSCCGGGCEEEEEEEECS
T ss_pred             CccccccCceEEEEEEcC
Confidence            999999999999999863

>1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A* 3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A* 3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A* 2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ...

Probab=98.87  E-value=7.9e-09  Score=52.75  Aligned_cols=75  Identities=17%  Similarity=0.153  Sum_probs=43.5

Q ss_pred             cCCCcEEEEEEeeeccc----ceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCce
Q psy4613          14 PIDTDVTLECYVEAYPK----SINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEV   89 (96)
Q Consensus        14 ~~g~~~~l~c~~~~~~~----~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~   89 (96)
                      ..|+.+.|.|.+.+.+.    ..+.|++++..+... ............+.....+.+......|.|.|.|.+.+..+..
T Consensus        16 ~~G~~v~L~C~~~g~~p~~~~~~v~W~k~~~~~~~~-~~~~~~~~~~g~~~~~~~l~i~~~d~~d~g~Y~C~a~n~~~~~   94 (207)
T 1l6x_A           16 MISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNA-KTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPA   94 (207)
T ss_dssp             CTTSCCEEEEEEEEECSSSCCCEEEEEETTEEECCC-EECCCEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTTSSS
T ss_pred             ecCCceEEEEEEecccCCCCCeEEEEEECCccccCc-ccCCceeccCCcEEEEEEEEEEHHHccCCceEEEEEEcCcCCc
Confidence            68999999999988652    389999986543211 0000000111111122334333333344999999999987753

>3kgr_A LAIR-1, hlair1, leukocyte-associated immunoglobulin-like receptor; IG-like domain, cell membrane, glycoprotein; 1.80A {Homo sapiens} PDB: 3rp1_A

Probab=98.87  E-value=4.2e-08  Score=45.30  Aligned_cols=78  Identities=17%  Similarity=0.245  Sum_probs=49.8

Q ss_pred             CCeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEec-ccceEEEEeccccceEEEEEEEccCCCCCCeeEE
Q psy4613           1 HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVIS-SERYEVESISRSIFDFKMRLTIKKITKYDLGSYK   79 (96)
Q Consensus         1 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~   79 (96)
                      +|.+...+.. .+..|..++|.|..... ...+.|++++...... .......     .......+.|..++..|.|.|.
T Consensus         9 kPsL~a~P~~-vv~~G~~VtL~C~~~~~-~~~f~l~k~g~~~~~~~~~~~~~~-----~~~~~~~f~i~~vt~~~aG~Y~   81 (106)
T 3kgr_A            9 RPSISAEPGT-VIPLGSHVTFVCRGPVG-VQTFRLERESRSTYNDTEDVSQAS-----PSESEARFRIDSVSEGNAGPYR   81 (106)
T ss_dssp             CCEEEEESCS-EEETTCCEEEEEEECTT-CCEEEEEEGGGTEEEEECCCEEEE-----TTEEEEEEEESSCCGGGCEEEE
T ss_pred             CCEEEEeCCC-ccCCCCeEEEEEEccCC-CcEEEEEECCCccccccccccccC-----CCCcceEEEecCCCcCCCceEE
Confidence            3566555544 57889999999986543 3467788886543210 0111000     0013467899999999999999


Q ss_pred             EEEecC
Q psy4613          80 CIAKNS   85 (96)
Q Consensus        80 c~~~~~   85 (96)
                      |...+.
T Consensus        82 C~~~~~   87 (106)
T 3kgr_A           82 CIYYKP   87 (106)
T ss_dssp             EEEEET
T ss_pred             EEeeCC
Confidence            987653

>1i3u_A Antibody VHH LAMA domain; VHH fragment, immune system; HET: RR1; 1.95A {Lama glama} SCOP: b.1.1.1 PDB: 1i3v_A

Probab=98.87  E-value=2.8e-07  Score=43.77  Aligned_cols=78  Identities=15%  Similarity=0.225  Sum_probs=51.2

Q ss_pred             EEecCceeeecCCCcEEEEEEeeecc--cceeEEeeccc----eeEe-c------------------ccceEEEEecccc
Q psy4613           4 IHVPNQLVGAPIDTDVTLECYVEAYP--KSINYWVRDQG----DMVI-S------------------SERYEVESISRSI   58 (96)
Q Consensus         4 ~~~~~~~~~~~~g~~~~l~c~~~~~~--~~~~~w~~~~~----~~~~-~------------------~~~~~~~~~~~~~   58 (96)
                      +..++ .+.+..|++++|.|.+.+..  ...+.|++...    ..+. .                  ..++......   
T Consensus         4 v~qp~-~~~v~~G~~vtL~C~~s~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Rf~~~~~~---   79 (127)
T 1i3u_A            4 LQESG-GGLVQAGDSLKLSCEASGDSIGTYVIGWFRQAPGKERIYLATIGRNLVGPSDFYTRYADSVKGRFAVSRDN---   79 (127)
T ss_dssp             EEEES-CEECCTTCCEEEEEEEESSCGGGSEEEEEEECTTSCCEEEEEEEEEESSSSCEEEEECTTTBTTEEEEEEG---
T ss_pred             EECCC-CEEEeCCCcEEEEEEecCCCcCCcEEEEEEECCCCCcEEEEEEEeccccCCCcceeeCcccCCeEEEEEcC---
Confidence            44443 56789999999999987533  46799987531    1111 0                  1233322211   


Q ss_pred             ceEEEEEEEccCCCCCCeeEEEEEecC
Q psy4613          59 FDFKMRLTIKKITKYDLGSYKCIAKNS   85 (96)
Q Consensus        59 ~~~~~~l~i~~~~~~d~g~y~c~~~~~   85 (96)
                      ......|.|.+++.+|+|.|.|.+.+.
T Consensus        80 ~~~~~~L~I~~~~~~Dsg~Y~C~~~~~  106 (127)
T 1i3u_A           80 AKNTVNLQMNSLKPEDTAVYYCAAKTT  106 (127)
T ss_dssp             GGTEEEEEECSCCGGGCEEEEEEEESC
T ss_pred             CCCEEEEEECCCChhhCEEEEEEEEcC
Confidence            012467999999999999999999875

>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D, mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo sapiens}

Probab=98.87  E-value=3.5e-08  Score=51.78  Aligned_cols=76  Identities=11%  Similarity=0.117  Sum_probs=50.7

Q ss_pred             EecCceeeecCCCcEEEEEEeeecccceeEEeeccc----eeE-eccc------------ceEEEEeccccceEEEEEEE
Q psy4613           5 HVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQG----DMV-ISSE------------RYEVESISRSIFDFKMRLTI   67 (96)
Q Consensus         5 ~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~----~~~-~~~~------------~~~~~~~~~~~~~~~~~l~i   67 (96)
                      ..++..+.+..|+.+.|.|.+.+.+.+.+.|++...    ... ....            ++....  ...   .. |.|
T Consensus         5 ~q~p~~v~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~--~~~---~~-L~I   78 (253)
T 3to4_D            5 EQNPRWRLVPRGQAVNLRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATR--VTD---TE-LRL   78 (253)
T ss_dssp             EEECSEEEEESSCCEEEEEECSCTTCCCEEEEEEETTCCEEEEEEECSTTCEEEEEETTEEEEEEC--CSS---SC-CEE
T ss_pred             EeCCCeEEEeCCCcEEEEEEeCCCCcceEEEEEECCCCCcEEEEEECCCcceecCCccCCcEEEEe--CCC---Ce-EEE
Confidence            445667789999999999998888888999987321    111 0000            211111  000   11 899


Q ss_pred             ccCCCCCCeeEEEEEecCC
Q psy4613          68 KKITKYDLGSYKCIAKNSL   86 (96)
Q Consensus        68 ~~~~~~d~g~y~c~~~~~~   86 (96)
                      .+++..|+|.|.|.+.+..
T Consensus        79 ~~v~~~DsG~Y~C~~~~~~   97 (253)
T 3to4_D           79 QVANMSQGRTLYCTSSADH   97 (253)
T ss_dssp             EEESCSSCEEEEEEEECSC
T ss_pred             ccCChhhCeEEEEEEecCC
Confidence            9999999999999998653

>3lh2_H FV 4E10 heavy chain; epitope-scaffold, immune system; 2.65A {Homo sapiens} PDB: 3h3p_H 3lhp_H 2xtj_D

Probab=98.87  E-value=3.2e-07  Score=44.31  Aligned_cols=81  Identities=16%  Similarity=0.225  Sum_probs=52.2

Q ss_pred             eEEecCceeeecCCCcEEEEEEeeecc--cceeEEeeccc----eeEec--------------ccceEEEEeccccceEE
Q psy4613           3 VIHVPNQLVGAPIDTDVTLECYVEAYP--KSINYWVRDQG----DMVIS--------------SERYEVESISRSIFDFK   62 (96)
Q Consensus         3 ~~~~~~~~~~~~~g~~~~l~c~~~~~~--~~~~~w~~~~~----~~~~~--------------~~~~~~~~~~~~~~~~~   62 (96)
                      .+..++..+ +.+|++++|.|...+..  ...+.|++...    ..+..              ..|+.+....   ....
T Consensus         5 ~v~Q~p~~~-v~~G~sVtL~C~~s~~~~~~~~v~Wyrq~~g~~~~~li~~~~~~~~~~~~~~~~~Rfs~~~~~---~~~~   80 (137)
T 3lh2_H            5 QLVQSGAEV-KRPGSSVTVSCKASGGSFSTYALSWVRQAPGRGLEWMGGVIPLLTITNYAPRFQGRITITADR---STST   80 (137)
T ss_dssp             EEEECCCEE-ECSSCCEEEEEEEESSCSTTSCEEEEEECTTCCCEEEEEEEGGGTEEEECTTTTTTEEEEEET---TTTE
T ss_pred             eEEECCCEE-EcCCCCEEEEEEecCCcccccEEEEEEECCCCCCEEEEEEEcCCCccccCcccCCcEEEEecC---CCCE
Confidence            455666666 89999999999987532  35789987421    11111              0122222110   1124


Q ss_pred             EEEEEccCCCCCCeeEEEEEecCCC
Q psy4613          63 MRLTIKKITKYDLGSYKCIAKNSLG   87 (96)
Q Consensus        63 ~~l~i~~~~~~d~g~y~c~~~~~~g   87 (96)
                      ..|.|.+++.+|+|.|.|.+....|
T Consensus        81 ~sLtI~~lq~~Dsg~Y~C~~~~~~~  105 (137)
T 3lh2_H           81 AYLELNSLRPEDTAVYYCAREGTTG  105 (137)
T ss_dssp             EEEEECSCCGGGCEEEEEEEEEEC-
T ss_pred             EEEEECCCChhhCEEEEEEEEECCC
Confidence            6799999999999999999987554

>1dqt_A CTLA4, cytotoxic T lymphocyte associated antigen 4; immunoglobulin variable domain-like beta-sandwich, homodimer, immune system; 2.00A {Mus musculus} SCOP: b.1.1.1

Probab=98.87  E-value=1.1e-07  Score=44.47  Aligned_cols=77  Identities=17%  Similarity=0.201  Sum_probs=47.0

Q ss_pred             CceeeecCCCcEEEEEEeeecccc---eeEEeecccee-------Ee-cccceEEEEe---ccccceEEEEEEEccCCCC
Q psy4613           8 NQLVGAPIDTDVTLECYVEAYPKS---INYWVRDQGDM-------VI-SSERYEVESI---SRSIFDFKMRLTIKKITKY   73 (96)
Q Consensus         8 ~~~~~~~~g~~~~l~c~~~~~~~~---~~~w~~~~~~~-------~~-~~~~~~~~~~---~~~~~~~~~~l~i~~~~~~   73 (96)
                      +..+.+..|++++|.|...+....   .+.|++.....       .. ..........   ..........|.|.+++.+
T Consensus         6 p~~~~~~~G~~v~L~C~~~~~~~~~~~~v~Wyrq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~   85 (117)
T 1dqt_A            6 PSVVLASSHGVASFPCEYSPSHNTDEVRVTVLRQTNDQMTEVCATTFTEKNTVGFLDYPFCSGTFNESRVNLTIQGLRAV   85 (117)
T ss_dssp             CSEEECCTTSCEEEEEEEESCCTTCEEEEEEEEECSSCEEEEEEEEECSSSBEECTTCTTEEEEEETTEEEEEECSCCGG
T ss_pred             CceEEEeCCCeEEEEEEeeCCCCCCccEEEEEecCCCCCcEEEEEEEecCccceEeccEEEecccCCCEEEEEEeCCCcc
Confidence            456778999999999998743333   78999753211       10 0000000000   0000012357999999999


Q ss_pred             CCeeEEEEEec
Q psy4613          74 DLGSYKCIAKN   84 (96)
Q Consensus        74 d~g~y~c~~~~   84 (96)
                      |+|.|.|.+..
T Consensus        86 Dsg~Y~C~~~~   96 (117)
T 1dqt_A           86 DTGLYLCKVEL   96 (117)
T ss_dssp             GCEEEEEEEEE
T ss_pred             cCEEEEEEEee
Confidence            99999999864

>3tjh_C 42F3 alpha; IG MHC, antigen recognition, TCR-PMHC, membrane receptor, IM system; 2.12A {Mus musculus} PDB: 3tpu_A 3tfk_C 1j8h_D* 1fyt_D* 4gkz_A* 3rev_A 1mwa_A* 1g6r_A* 1tcr_A* 2ckb_A 1zgl_M 3c5z_A 1i9e_A* 2oi9_B 2e7l_A 2icw_I 3e2h_B 3e3q_D 4h1l_G

Probab=98.87  E-value=9.1e-08  Score=49.85  Aligned_cols=78  Identities=17%  Similarity=0.282  Sum_probs=53.6

Q ss_pred             EEecCceeeecCCCcEEEEEEeeecccceeEEeecc--c--eeEe-c--------c-cceEEEEeccccceEEEEEEEcc
Q psy4613           4 IHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQ--G--DMVI-S--------S-ERYEVESISRSIFDFKMRLTIKK   69 (96)
Q Consensus         4 ~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~--~--~~~~-~--------~-~~~~~~~~~~~~~~~~~~l~i~~   69 (96)
                      +...+..+.+..|++++|.|.........+.|++..  .  ..+. .        . .|+......   ......|.|.+
T Consensus        12 V~Qsp~~v~v~~G~sVtL~C~~s~~~~~~v~WyrQ~pg~~~~~Li~~~~~~~~~~~~~Rfs~s~~~---~~~~~sLtI~~   88 (226)
T 3tjh_C           12 VTQPDARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGLQMLLKYYSGDPVVQGVNGFEAEFSK---SDSSFHLRKAS   88 (226)
T ss_dssp             EECSCSEEEEETTSCEEECCEEEESSCEEEEEEEECTTSCCEEEEEECSSSSEEECGGGEEEEEET---TTTEEEEEESS
T ss_pred             EEEeCCEEEEEcCCCEEEEEEEecCCCCeEEEEEECCCCCcEEEEEecCCCccccccCcEEEEEcC---CCCEEEEEEec
Confidence            455667788999999999999887656689999852  1  1111 0        1 333332111   11246799999


Q ss_pred             CCCCCCeeEEEEEec
Q psy4613          70 ITKYDLGSYKCIAKN   84 (96)
Q Consensus        70 ~~~~d~g~y~c~~~~   84 (96)
                      ++.+|+|.|.|.+..
T Consensus        89 lq~~DSG~YyCa~~~  103 (226)
T 3tjh_C           89 VHWSDSAVYFCAVSA  103 (226)
T ss_dssp             CCGGGCEEEEEEEEE
T ss_pred             CCcccCCCEEEEEEe
Confidence            999999999999874

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R

Probab=98.87  E-value=1.9e-07  Score=55.54  Aligned_cols=85  Identities=18%  Similarity=0.217  Sum_probs=53.4

Q ss_pred             ceeeecCCCcEEEEEEeeec--ccceeEEeeccceeEecccceEEEEec---cccceEEEEEEEccCCCCCCeeEEEEEe
Q psy4613           9 QLVGAPIDTDVTLECYVEAY--PKSINYWVRDQGDMVISSERYEVESIS---RSIFDFKMRLTIKKITKYDLGSYKCIAK   83 (96)
Q Consensus         9 ~~~~~~~g~~~~l~c~~~~~--~~~~~~w~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~i~~~~~~d~g~y~c~~~   83 (96)
                      ....+..|+.+.|.|.+.+.  +.+.+.|++++...... .........   .........|.|.++...|.|.|.|.+.
T Consensus       232 ~~~~v~~G~~v~L~C~~~~~~~~~~~~~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~  310 (772)
T 3v2a_R          232 HGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHK-KLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAAS  310 (772)
T ss_dssp             SCEEEETTCCEEEEEEEEECTTCCCEEEEECC---------CEEEEC-----CCCEEEEEEEEESSCCSTTCSEEEEEEE
T ss_pred             CceEEecCCcEEEEEEEecCCCCceeEEEecCCccCCCc-eeeeccccccccccceEEEEEEEECcCCcCCCeEEEEEEE
Confidence            33568899999999999874  45578999886543211 111000000   0111245789999999999999999999


Q ss_pred             cCCCceEEEEE
Q psy4613          84 NSLGEVESSIR   94 (96)
Q Consensus        84 ~~~g~~~~~~~   94 (96)
                      +..+.....+.
T Consensus       311 ~~~~~~~~~~~  321 (772)
T 3v2a_R          311 SGLMTKKNSTF  321 (772)
T ss_dssp             CSSCEEEEEEE
T ss_pred             cCCcceeEEEE
Confidence            98776554443

>1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY high affinity, antibody binding, electrostatics, directed evolution; HET: FLU; 1.50A {Homo sapiens}

Probab=98.87  E-value=7.7e-08  Score=50.88  Aligned_cols=73  Identities=16%  Similarity=0.276  Sum_probs=49.0

Q ss_pred             eeeecCCCcEEEEEEeeecc--cceeEEeecc--cee--Ee----------------cccceEEEEeccccceEEEEEEE
Q psy4613          10 LVGAPIDTDVTLECYVEAYP--KSINYWVRDQ--GDM--VI----------------SSERYEVESISRSIFDFKMRLTI   67 (96)
Q Consensus        10 ~~~~~~g~~~~l~c~~~~~~--~~~~~w~~~~--~~~--~~----------------~~~~~~~~~~~~~~~~~~~~l~i   67 (96)
                      ...+..|+.+.|.|.+.+.+  .+.+.|++..  ...  +.                ...++......   ......|.|
T Consensus       160 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~~---~~~~~~L~I  236 (268)
T 1x9q_A          160 GGLVQPGGAMKLSCVTSGFTFGHYWMNWVRQSPEKGLEWVAQFRNKPYNYETYYSDSVKGRFTISRDD---SKSSVYLQM  236 (268)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEEG---GGTEEEEEE
T ss_pred             ceEecCCCcEEEEEEecCccccccEEEEEEeCCCCCcEEEEEEcccccccccccCCccCCeEEEEEeC---CCCEEEEEE
Confidence            45688899999999998765  3789998753  111  10                01233322111   001367999


Q ss_pred             ccCCCCCCeeEEEEEecC
Q psy4613          68 KKITKYDLGSYKCIAKNS   85 (96)
Q Consensus        68 ~~~~~~d~g~y~c~~~~~   85 (96)
                      .+++..|+|.|.|.+.+.
T Consensus       237 ~~v~~~DsG~Y~C~a~~~  254 (268)
T 1x9q_A          237 NNLRVEDTGIYYCTGASY  254 (268)
T ss_dssp             CSCCGGGCEEEEEEEEET
T ss_pred             CCCCHHHCEEEEEEEccC
Confidence            999999999999999874

>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein, immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 1p9m_C 2arw_A

Probab=98.86  E-value=4.7e-09  Score=57.02  Aligned_cols=68  Identities=21%  Similarity=0.329  Sum_probs=47.8

Q ss_pred             EecCceeeecCCCcEEEEEEeeecc-cceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEE
Q psy4613           5 HVPNQLVGAPIDTDVTLECYVEAYP-KSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCI   81 (96)
Q Consensus         5 ~~~~~~~~~~~g~~~~l~c~~~~~~-~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~   81 (96)
                      ..+...+.+..|..++|.|.+.+.+ .+.+.|.+++..+.....+..  .       ....|.|.++...|.|.|.|.
T Consensus        10 ~~p~~~v~~~~G~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~--~-------~~~~L~i~~v~~~d~G~Y~C~   78 (325)
T 1n26_A           10 EVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWA--G-------MGRRLLLRSVQLHDSGNYSCY   78 (325)
T ss_dssp             CCCTTEEEECTTCCEEEECTTSCTTCCSEEEEEEECSSSSCCCEEEE--E-------ESSEEEECSCCGGGCEEEEEE
T ss_pred             ccCCCcEECCCCCcEEEEeCCCCCCCCceEEEEECCccCCccccccc--c-------ccceEEecccchhhCeEeEEE
Confidence            3455555567999999999988654 678999987654311111111  1       225689999999999999998

>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=98.86  E-value=1.1e-08  Score=54.14  Aligned_cols=66  Identities=15%  Similarity=0.188  Sum_probs=44.7

Q ss_pred             eecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecC
Q psy4613          12 GAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNS   85 (96)
Q Consensus        12 ~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~   85 (96)
                      .+..|+.++|.|.+.+. .+.+.|++++..+.........   ...  .....|.|.+++  |.|.|.|.+.+.
T Consensus       117 ~V~~G~~vtL~C~~~~~-~~~~~w~k~g~~~~~~~~~~~~---~~~--~~~~~l~I~~v~--D~G~Y~C~a~~~  182 (257)
T 1b6u_A          117 TVLAGESVTLSCSSRSS-YDMYHLSREGEAHERRFSAGPK---VNG--TFQADFPLGPAT--HGGTYRCFGSFR  182 (257)
T ss_dssp             TCBTTCEEEEEEECSSC-CSEEEEEETTSSCEECCBCBCC---SSS--CCBEEEEEEECC--SCEEEEEEEECS
T ss_pred             ccCCCCEEEEEEeCCCC-CcEEEEEECCcccCcccccccc---cCC--ceeEEEEecccc--cCEEEEEEEEcC
Confidence            46789999999998774 4688999987655322111000   000  013678888888  999999999864

>1xed_A Polymeric-immunoglobulin receptor; IG-like fold, immune system; 1.90A {Homo sapiens} SCOP: b.1.1.1

Probab=98.85  E-value=1.5e-07  Score=44.22  Aligned_cols=75  Identities=21%  Similarity=0.395  Sum_probs=49.1

Q ss_pred             CceeeecCCCcEEEEEEeeecc---cceeEEeeccc----eeEe-c--------ccceEEEEeccccceEEEEEEEccCC
Q psy4613           8 NQLVGAPIDTDVTLECYVEAYP---KSINYWVRDQG----DMVI-S--------SERYEVESISRSIFDFKMRLTIKKIT   71 (96)
Q Consensus         8 ~~~~~~~~g~~~~l~c~~~~~~---~~~~~w~~~~~----~~~~-~--------~~~~~~~~~~~~~~~~~~~l~i~~~~   71 (96)
                      +..+.+..|++++|.|......   ...+.|++...    ..+. .        ..++......   ......|.|.+++
T Consensus         7 p~~v~~~~G~~vtL~C~~s~~~~~~~~~v~Wyrq~~~~~~~~li~~~~~~~~~~~~R~~~~~~~---~~~~~sL~I~~l~   83 (117)
T 1xed_A            7 PEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFP---ENGTFVVNIAQLS   83 (117)
T ss_dssp             CSEEEEETTCCEEEEEECCCCHHHHHSCEEEEEC-----CEEEEESSSCBCTTTTTTEEEEEET---TTTEEEEEECSCC
T ss_pred             CCeEEEecCCCEEEEeEecCCcCCCCceEEEEEeCCCCCCEEEEEeCCeEcceEcCCEEEEecC---CCCEEEEEECCCC
Confidence            4567789999999999987531   45789998642    1111 1        1233322111   1124679999999


Q ss_pred             CCCCeeEEEEEecC
Q psy4613          72 KYDLGSYKCIAKNS   85 (96)
Q Consensus        72 ~~d~g~y~c~~~~~   85 (96)
                      .+|+|.|.|.+...
T Consensus        84 ~~DsG~Y~C~v~~~   97 (117)
T 1xed_A           84 QDDSGRYKCGLGIN   97 (117)
T ss_dssp             GGGCEEEEEEESCG
T ss_pred             hHHCEEEEEEEEeC
Confidence            99999999998754

>2wzp_D Camelid VHH5; baseplate, viral protein; 2.60A {Lama glama} PDB: 2bse_D

Probab=98.85  E-value=6e-08  Score=45.82  Aligned_cols=78  Identities=17%  Similarity=0.218  Sum_probs=50.9

Q ss_pred             EEecCceeeecCCCcEEEEEEeeecc--cceeEEeeccc----eeE-e--c-----------ccceEEEEeccccceEEE
Q psy4613           4 IHVPNQLVGAPIDTDVTLECYVEAYP--KSINYWVRDQG----DMV-I--S-----------SERYEVESISRSIFDFKM   63 (96)
Q Consensus         4 ~~~~~~~~~~~~g~~~~l~c~~~~~~--~~~~~w~~~~~----~~~-~--~-----------~~~~~~~~~~~~~~~~~~   63 (96)
                      +..+ ..+.+..|+++.|.|.+.+..  ...+.|++...    ..+ .  .           ..++......   .....
T Consensus         4 v~qp-~~~~~~~G~~vtL~C~~~~~~~~~~~v~W~rq~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~---~~~~~   79 (123)
T 2wzp_D            4 LQES-GGGLVQAGGSLRLSCTASRRTGSNWCMGWFRQLAGKEPELVVALNFDYDMTYYADSVKGRFTVSRDS---GKNTV   79 (123)
T ss_dssp             EEEE-ECEEEETTCCEEEEEEESSCCSSSEEEEEEECCSSSSCEEEEEEETTTTEEEECGGGTTTEEEEEET---TEEEE
T ss_pred             EECC-CCEEEcCCCcEEEEEEecCCCccCcEEEEEEECCCCCCEEEEEEEcCCCceecCcccCCCEEEEEeC---CCCEE
Confidence            3443 356789999999999987532  56799998531    111 1  0           1233322110   11346


Q ss_pred             EEEEccCCCCCCeeEEEEEecC
Q psy4613          64 RLTIKKITKYDLGSYKCIAKNS   85 (96)
Q Consensus        64 ~l~i~~~~~~d~g~y~c~~~~~   85 (96)
                      .|.|.+++.+|+|.|.|.+.+.
T Consensus        80 ~L~I~~~~~~Dsg~Y~C~~~~~  101 (123)
T 2wzp_D           80 YLQMNSLKPEDTAIYYCAARSG  101 (123)
T ss_dssp             EEEECSCCGGGCEEEEEEEEES
T ss_pred             EEEECCCCHHHCEEEEEEEecC
Confidence            7999999999999999998865

>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}

Probab=98.85  E-value=1.6e-08  Score=51.32  Aligned_cols=82  Identities=13%  Similarity=0.258  Sum_probs=51.4

Q ss_pred             cCceeeecCCCcEEEEEEeeecccc---eeEEeeccceeEec-----ccceEEEEec----------cccceEEEEEEEc
Q psy4613           7 PNQLVGAPIDTDVTLECYVEAYPKS---INYWVRDQGDMVIS-----SERYEVESIS----------RSIFDFKMRLTIK   68 (96)
Q Consensus         7 ~~~~~~~~~g~~~~l~c~~~~~~~~---~~~w~~~~~~~~~~-----~~~~~~~~~~----------~~~~~~~~~l~i~   68 (96)
                      .+..+.+..|+.+.|.|.+.+.+.+   .+.|++++......     ..........          ........+|.|.
T Consensus         5 ~p~~vtv~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~   84 (218)
T 4frw_A            5 TSDVVTVVLGQDAKLPCFYRGDSGEQVGQVAWARVDAGEGAQELALLHSKYGLHVSPAYEGRVEQPPPPRNPLDGSVLLR   84 (218)
T ss_dssp             CCSEEEEETTSCEEECCEECCCTTCEEEEEEEEEECSSSCEEEEEEEETTTEEEECGGGTTTEECCSSCCCTTBCCEEES
T ss_pred             CCCeEEEEcCCCEEEEEEEEcCCCCCccEEEEEECCCCCCceeEEEecCCCCeEeCccccceEEEecccccCCeEEEEEe
Confidence            3456778999999999999887755   48899865332110     0000000000          0000012469999


Q ss_pred             cCCCCCCeeEEEEEecCCCc
Q psy4613          69 KITKYDLGSYKCIAKNSLGE   88 (96)
Q Consensus        69 ~~~~~d~g~y~c~~~~~~g~   88 (96)
                      +++..|.|.|.|.+.+..+.
T Consensus        85 ~v~~~D~G~Y~C~~~~~~~~  104 (218)
T 4frw_A           85 NAVQADEGEYECRVSTFPAG  104 (218)
T ss_dssp             SCCGGGCEEEEEEEEEETTE
T ss_pred             eccHHHCCceeEEEEeccCc
Confidence            99999999999998875554

>1c5d_H Monoclonal antibody against the main immunogenic the human muscle acetylcholine receptor...; immunoglobulin, immune system; 2.40A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 2arj_H 3b9k_H* 2gk0_H 2gjz_H 1fn4_B 3mj8_H 3mj9_H*

Probab=98.85  E-value=3.8e-08  Score=50.49  Aligned_cols=75  Identities=16%  Similarity=0.311  Sum_probs=50.3

Q ss_pred             ceeeecCCCcEEEEEEeeecc--cceeEEeecc--cee--E-e------------cccceEEEEeccccceEEEEEEEcc
Q psy4613           9 QLVGAPIDTDVTLECYVEAYP--KSINYWVRDQ--GDM--V-I------------SSERYEVESISRSIFDFKMRLTIKK   69 (96)
Q Consensus         9 ~~~~~~~g~~~~l~c~~~~~~--~~~~~w~~~~--~~~--~-~------------~~~~~~~~~~~~~~~~~~~~l~i~~   69 (96)
                      ..+.+..|+.+.|.|.+.+.+  .+.+.|++..  ...  + .            ...++.+.....   .....|.|.+
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~---~~~~~L~I~~   84 (215)
T 1c5d_H            8 GPGLVQPSQTLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTS---KSQVFLKMNS   84 (215)
T ss_dssp             CCCEECTTCCEEEEEEECSSCTTSCCEEEEEECTTSCCEEEEEECTTCCEECCTTTGGGEEEEEETT---TTEEEEEESS
T ss_pred             CCeeecCCCcEEEEEEECCCcCCCCeEEEEEECCCCCcEEEEEEcCCCCcEECCcccCcEEEEeeCC---CceEEEEECC
Confidence            446788999999999998754  4689998753  111  1 0            012333221110   0235799999


Q ss_pred             CCCCCCeeEEEEEecCC
Q psy4613          70 ITKYDLGSYKCIAKNSL   86 (96)
Q Consensus        70 ~~~~d~g~y~c~~~~~~   86 (96)
                      ++..|.|.|.|.+.+..
T Consensus        85 v~~~D~G~Y~C~~~~~~  101 (215)
T 1c5d_H           85 LQTEDTAIYFCTREDGW  101 (215)
T ss_dssp             CCGGGCEEEEEEECCSS
T ss_pred             CCcccCEEEEEEEecCC
Confidence            99999999999998753

>3rgv_A YAE62 TCR A chain; TCR, MHC, MHC class I, immune system; 2.90A {Mus musculus} PDB: 3c60_A

Probab=98.85  E-value=4.3e-08  Score=50.19  Aligned_cols=79  Identities=13%  Similarity=0.196  Sum_probs=53.3

Q ss_pred             eEEecCceeeecCCCcEEEEEEeeecccceeEEeecc--c--eeEe-c--------ccceEEEEeccccceEEEEEEEcc
Q psy4613           3 VIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQ--G--DMVI-S--------SERYEVESISRSIFDFKMRLTIKK   69 (96)
Q Consensus         3 ~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~--~--~~~~-~--------~~~~~~~~~~~~~~~~~~~l~i~~   69 (96)
                      .+...+..+.+..|+.++|.|.+.......+.|++..  .  ..+. .        ..|+......   ......|.|.+
T Consensus         2 ~VtQ~p~~v~v~~G~svtL~C~~s~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~Rfs~~~~~---~~~~~sL~I~~   78 (200)
T 3rgv_A            2 SVTQMQGQVTLSENDFLFINCTYSTTGYPTLFWYVQYSGEGPQLLLQVTTANNKGSSRGFEATYDK---GTTSFHLQKTS   78 (200)
T ss_dssp             EEECCCSEEEEETTCCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSTTCEEEETTEEEECBT---TTTBCCEEESS
T ss_pred             ccEECCCEEEEeCCCCEEEEEEecCCCCcEEEEEEeCCCCCcEEEEEecCCCCcccCCceEEEECC---CCCEEEEEEcC
Confidence            3556677888999999999999887555689999742  1  1111 1        1222222111   01235699999


Q ss_pred             CCCCCCeeEEEEEec
Q psy4613          70 ITKYDLGSYKCIAKN   84 (96)
Q Consensus        70 ~~~~d~g~y~c~~~~   84 (96)
                      ++.+|+|.|.|.+..
T Consensus        79 l~~~DsG~Y~Ca~~~   93 (200)
T 3rgv_A           79 VQEIDSAVYYCAANS   93 (200)
T ss_dssp             CCSTTCEEEEEEEES
T ss_pred             CcCccCCCEEEEecc
Confidence            999999999999864

>4ei6_A Valpha1 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_C 4elk_A 4elm_E* 3qeu_A 1ao7_D 3qdj_D 3qdg_D 3qfj_D 1qsf_D 1qse_D* 3d39_D* 3d3v_D* 3h9s_D 3pwp_D 2gj6_D 3utp_D* 3uts_D 1qrn_D 3hg1_D 3rdt_A ...

Probab=98.84  E-value=2.7e-08  Score=51.20  Aligned_cols=79  Identities=15%  Similarity=0.299  Sum_probs=52.6

Q ss_pred             eEEecCceeeecCCCcEEEEEEeeecccceeEEeeccc----eeEe-c-------ccceEEEEeccccceEEEEEEEccC
Q psy4613           3 VIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQG----DMVI-S-------SERYEVESISRSIFDFKMRLTIKKI   70 (96)
Q Consensus         3 ~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~----~~~~-~-------~~~~~~~~~~~~~~~~~~~l~i~~~   70 (96)
                      .+...+..+.+..|+.+.|.|...+.....+.|++...    ..+. .       ..|+.......   .....|.|.++
T Consensus         4 ~V~Q~p~~v~v~~G~sVtL~C~~s~~~~~~v~Wyrq~~g~~~~~li~~~~~~~~~~~Rfs~~~~~~---~~~~sL~I~~l   80 (208)
T 4ei6_A            4 KVQQSPESLSVPEGGMASLNCTSSDRNFQYFWWYRQHSGEGPKALMSIFSDGDKKEGRFTAHLNKA---SLHVSLHIRDS   80 (208)
T ss_dssp             CEEEECSEEEEETTCCEECEEEECCTTEEEEEEEEECTTSCCEEEEECCSSEEEEETTEEEEEBTT---TTBC-CEECSC
T ss_pred             eEEEeCCEEEEECCCCEEEEEEEcCCCCceEEEEEeCCCCCcEEEEEECCCCcccCCcEEEEEcCC---CCEEEEEEEeC
Confidence            45566777889999999999998876556899997521    1111 1       12232221110   12357999999


Q ss_pred             CCCCCeeEEEEEec
Q psy4613          71 TKYDLGSYKCIAKN   84 (96)
Q Consensus        71 ~~~d~g~y~c~~~~   84 (96)
                      +.+|+|.|.|.+..
T Consensus        81 q~~DsG~Y~Ca~~~   94 (208)
T 4ei6_A           81 QPSDSALYFCAASE   94 (208)
T ss_dssp             CGGGCEEEEEEEEE
T ss_pred             cccCCCcEEEEEec
Confidence            99999999999864

>3o3u_N Maltose-binding periplasmic protein, advanced Gly END product-specific receptor; RAGE, AGER, scavenger receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3s59_A 3s58_A 3cjj_A 2l7u_A* 2e5e_A

Probab=98.84  E-value=2.8e-09  Score=61.63  Aligned_cols=73  Identities=22%  Similarity=0.240  Sum_probs=53.5

Q ss_pred             ceeeecCCCcEEEEEEe-eecccceeEEeeccceeEec-----------ccceEEEEeccccceEEEEEEEccCCCCCCe
Q psy4613           9 QLVGAPIDTDVTLECYV-EAYPKSINYWVRDQGDMVIS-----------SERYEVESISRSIFDFKMRLTIKKITKYDLG   76 (96)
Q Consensus         9 ~~~~~~~g~~~~l~c~~-~~~~~~~~~w~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g   76 (96)
                      ..+.+..|+.+.|.|.+ .+.+.+.+.|++++......           ..+....        ....|.|.+++..|.|
T Consensus       374 ~~~~~~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~r~~~~--------~~~~L~i~~v~~~D~G  445 (581)
T 3o3u_N          374 QNITARIGEPLVLKCKGAPKKPPQRLEWKLNTGRTEAWKVLSPQGGGPWDSVARVL--------PNGSLFLPAVGIQDEG  445 (581)
T ss_dssp             EEEEEETTSCEEECCTTCCSSSSCEEEEEEEETTSSSCEECCSCCSSGGGGTSEEC--------TTSCEEESSCCGGGCE
T ss_pred             cccceecCCcEEEeeeecCCCCCceEEEEEcCCeeEEEEecccCCCCCcCCcEEEc--------CCceEEEeccccccCe
Confidence            34567899999999998 77888899999875422100           1121111        1236999999999999


Q ss_pred             eEEEEEecCCCce
Q psy4613          77 SYKCIAKNSLGEV   89 (96)
Q Consensus        77 ~y~c~~~~~~g~~   89 (96)
                      .|.|.+.+..+..
T Consensus       446 ~Y~C~~~n~~~~~  458 (581)
T 3o3u_N          446 IFRCQAMNRNGKE  458 (581)
T ss_dssp             EEEEEEECTTSCE
T ss_pred             EEEEEEEcCCCce
Confidence            9999999988866

>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*

Probab=98.84  E-value=4.5e-08  Score=55.23  Aligned_cols=74  Identities=14%  Similarity=0.268  Sum_probs=48.8

Q ss_pred             ecCCCcEEEEEEeeec-cc-ceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCce
Q psy4613          13 APIDTDVTLECYVEAY-PK-SINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEV   89 (96)
Q Consensus        13 ~~~g~~~~l~c~~~~~-~~-~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~   89 (96)
                      +..|+.+.|.|.+.+. |. +.+.|++++..+...  ...........+.....|.|..+...| |.|.|.+.+..+..
T Consensus       144 ~~~g~~v~L~C~~~g~~P~~~~v~W~k~~~~~~~~--~~~~~~~~~~~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~~~~  219 (457)
T 1hzh_H          144 STSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVH--TFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNT  219 (457)
T ss_dssp             CCTTCCEEEEEEEESBBSCCCEEEETTTTBCTTEE--EEEEEECTTSCEEEEEEEEECSGGGGT-SCCEEEEEEGGGTE
T ss_pred             ccCCCcEEEEEEEeEEeCCCeEEEEEeCCEeccce--EcCceECCCCCEEEEEEEEecccccCC-ceEEEEEEeCCCCc
Confidence            4689999999999886 54 689999886432100  000001111122234578999998888 99999999976653

>3m8o_H Immunoglobulin A1 heavy chain; immunoglobulin fold, immune system; 1.55A {Homo sapiens} PDB: 3qnx_B 3qny_B

Probab=98.84  E-value=1.6e-07  Score=48.26  Aligned_cols=73  Identities=16%  Similarity=0.247  Sum_probs=48.9

Q ss_pred             eeeecCCCcEEEEEEeeecc--cceeEEeeccc--ee--Ee----------------cccceEEEEeccccceEEEEEEE
Q psy4613          10 LVGAPIDTDVTLECYVEAYP--KSINYWVRDQG--DM--VI----------------SSERYEVESISRSIFDFKMRLTI   67 (96)
Q Consensus        10 ~~~~~~g~~~~l~c~~~~~~--~~~~~w~~~~~--~~--~~----------------~~~~~~~~~~~~~~~~~~~~l~i   67 (96)
                      .+.+..|+++.|.|.+.+.+  .+.+.|++...  ..  ..                ...++.+.....   .....|.|
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~---~~~~sL~I   85 (221)
T 3m8o_H            9 GGLVQPGGSLKLSCAASGFTLSGSNVHWVRQASGKGLEWVGRIKRNAESDATAYAASMRGRLTISRDDS---KNTAFLQM   85 (221)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECCGGGTTCEEECGGGTTSEEEEEEGG---GTEEEEEE
T ss_pred             CEEEcCCCCEEEEEEcccccccccEEEEEEECCCCCcEEEEEEcccccCcccccCccccccEEEEecCC---CCEEEEEE
Confidence            46689999999999998643  56899987421  11  10                012333322110   12357999


Q ss_pred             ccCCCCCCeeEEEEEecC
Q psy4613          68 KKITKYDLGSYKCIAKNS   85 (96)
Q Consensus        68 ~~~~~~d~g~y~c~~~~~   85 (96)
                      .+++..|+|.|.|.+.+.
T Consensus        86 ~~v~~~DsG~Y~C~~~~~  103 (221)
T 3m8o_H           86 NSLKSDDTAMYYCVIRGD  103 (221)
T ss_dssp             CSCCGGGCEEEEEEEESC
T ss_pred             CCCCHHHCEEEEEEEECC
Confidence            999999999999999875

>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R

Probab=98.84  E-value=2.1e-07  Score=50.08  Aligned_cols=76  Identities=14%  Similarity=0.138  Sum_probs=50.6

Q ss_pred             eeeecCCCcEEEEEEee-ecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCc
Q psy4613          10 LVGAPIDTDVTLECYVE-AYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGE   88 (96)
Q Consensus        10 ~~~~~~g~~~~l~c~~~-~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~   88 (96)
                      ...+..+....+.|.+. +.|.+.+.|++++..+... .  .........+...+.|.+......|.|.|.|.+.|..+.
T Consensus       126 ~~~~~~~~~~~~~C~~~~~~P~~~i~W~~~~~~~~~~-~--~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~  202 (313)
T 4fqp_A          126 KVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNT-S--QVPGFLSGTVTVTSLWILVPSSQVDGKNVTCKVEHESFE  202 (313)
T ss_dssp             CBCCCSSCEEEEEEEEEEEBSCCEEEEEETTCCEEEE-E--EEECSSTTCEEEEEEEEECCCGGGTTCEEEEEEECTTSS
T ss_pred             ceEeecCceEEEEEEccCccCCcEEEeecCCcccccc-c--eeeeecccccccceeeeecccccccCeeEEEEEEccCcC
Confidence            34456677888889865 6788899999986554321 1  111111112223467888888999999999999987654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	96
d3dara1	97	b.1.1.4 (A:153-249) Fibroblast growth factor recep	2e-13
d1biha4	89	b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecr	2e-13
d2cqva1	101	b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [T	4e-13
d1qz1a3	100	b.1.1.4 (A:190-289) Neural cell adhesion molecule	5e-13
d1koaa1	97	b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorha	5e-12
d1g1ca_	98	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	9e-12
d1f97a2	110	b.1.1.4 (A:129-238) Junction adhesion molecule, JA	8e-11
d1nbqa2	104	b.1.1.4 (A:130-233) Junction adhesion molecule, JA	1e-10
d2fdbp2	109	b.1.1.4 (P:2252-2360) Fibroblast growth factor rec	1e-10
d1pkoa_	126	b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (	4e-10
d1cs6a1	97	b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus	8e-10
d1cs6a3	91	b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gall	1e-09
d1cs6a4	89	b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gall	1e-09
d1rhfa1	91	b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor	2e-09
d1tnna_	91	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	2e-09
d1wwbx_	103	b.1.1.4 (X:) Ligand binding domain of trkB recepto	2e-09
d1iray3	107	b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor	2e-09
d3b5ha1	101	b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo	3e-09
d1biha1	94	b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropi	3e-09
d1fhga_	102	b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo)	3e-09
d1he7a_	107	b.1.1.4 (A:) High affinity nerve growth factor rec	5e-09
d1wiua_	93	b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis el	4e-08
d1n26a1	93	b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chai	6e-08
d2crya1	115	b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRR	7e-08
d1gxea_	130	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	1e-07
d1nbqa1	105	b.1.1.1 (A:25-129) Junction adhesion molecule, JAM	1e-07
d1epfa2	92	b.1.1.4 (A:98-189) Neural cell adhesion molecule (	2e-07
d1gl4b_	89	b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus muscu	3e-07
d2avga1	110	b.1.1.4 (A:1-110) Cardiac myosin binding protein C	9e-07
d1wwca_	105	b.1.1.4 (A:) NT3 binding domain of trkC receptor {	1e-06
d1biha3	97	b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecr	1e-06
d2dava1	113	b.1.1.4 (A:8-120) Myosin-binding protein C, slow-t	2e-06
d1f97a1	102	b.1.1.1 (A:27-128) Junction adhesion molecule, JAM	2e-06
d1x44a1	90	b.1.1.4 (A:8-97) Myosin-binding protein C, slow-ty	6e-06
d2c9aa1	96	b.1.1.4 (A:184-279) Receptor-type tyrosine-protein	6e-06
d1ccza1	93	b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-ter	6e-06
d2aw2a1	104	b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator	2e-05
d2oz4a3	84	b.1.1.4 (A:367-450) Intercellular adhesion molecul	8e-05
d1l6za2	96	b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a,	1e-04
d1hnga1	98	b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus no	7e-04
d1pd6a_	94	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	0.001
d1cs6a2	105	b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gall	0.001
d1rhfa2	85	b.1.1.4 (A:98-182) Tyrosine-protein kinase recepto	0.001
d1iray2	103	b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor	0.002
d1iray1	101	b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {H	0.002
d1olza1	92	b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {	0.003
d1iama1	103	b.1.1.3 (A:83-185) Intercellular cell adhesion mol	0.004

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

 Score = 57.9 bits (139), Expect = 2e-13
 Identities = 14/90 (15%), Positives = 30/90 (33%), Gaps = 5/90 (5%)

Query: 6  VPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRL 65
          +  +L   P    V   C     P     W+++  +                + +    L
Sbjct: 10 MEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIG-----GYKVRNQHWSL 64

Query: 66 TIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
           ++ +   D G+Y C+ +N  G +  +  L
Sbjct: 65 IMESVVPSDKGNYTCVVENEYGSINHTYHL 94

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 57.8 bits (139), Expect = 2e-13
 Identities = 18/93 (19%), Positives = 27/93 (29%), Gaps = 11/93 (11%)

Query: 3  VIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFK 62
              P +++      DVT+ C V   P     W  +   +                    
Sbjct: 5  YEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGGR-----------ATVTD 53

Query: 63 MRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
            L IK +   D G Y C A N  G+      +
Sbjct: 54 SGLVIKGVKNGDKGYYGCRATNEHGDKYFETLV 86

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.9 bits (139), Expect = 4e-13
 Identities = 17/94 (18%), Positives = 31/94 (32%), Gaps = 6/94 (6%)

Query: 2  PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDF 61
          P I    +         V L   V         W++ +  +  S      E +     + 
Sbjct: 1  PQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQES------EHMKVENSEN 54

Query: 62 KMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
            +LTI    +   G Y  + +N LG  ++ + L
Sbjct: 55 GSKLTILAARQEHCGCYTLLVENKLGSRQAQVNL 88

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 57.6 bits (138), Expect = 5e-13
 Identities = 28/96 (29%), Positives = 42/96 (43%), Gaps = 6/96 (6%)

Query: 2  PVIHVPNQLVG--APIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIF 59
          P +     +V   A +   VTL C  + +P+    W +D   +    E  E +       
Sbjct: 4  PTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPI----ENEEEDDEKHIFS 59

Query: 60 DFKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
          D    LTI+ + K D   Y CIA+N  GE ++SI L
Sbjct: 60 DDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHL 95

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 54.9 bits (131), Expect = 5e-12
 Identities = 20/94 (21%), Positives = 29/94 (30%), Gaps = 6/94 (6%)

Query: 2  PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDF 61
          P   V                C V A    +  W +D  ++       +     +     
Sbjct: 2  PRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDREL------KQSVKYMKRYNGN 55

Query: 62 KMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
             LTI ++   D G Y   AKNS G  E  + L
Sbjct: 56 DYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFL 89

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 54.1 bits (129), Expect = 9e-12
 Identities = 21/94 (22%), Positives = 27/94 (28%), Gaps = 5/94 (5%)

Query: 2  PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDF 61
          P I    Q       +D      V   P     W ++   +  S   Y          D 
Sbjct: 5  PKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWP-----EDN 59

Query: 62 KMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
             L I+ +T  D  S    A N  GE  S   L
Sbjct: 60 VCELVIRDVTGEDSASIMVKAINIAGETSSHAFL 93

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 51.9 bits (123), Expect = 8e-11
 Identities = 18/94 (19%), Positives = 29/94 (30%), Gaps = 3/94 (3%)

Query: 2  PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDF 61
          P     +      I     L C          Y     G  +++++  +  +   S F  
Sbjct: 3  PSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTI 62

Query: 62 KM---RLTIKKITKYDLGSYKCIAKNSLGEVESS 92
                L    +T +D G Y C A+N  G    S
Sbjct: 63 DPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRS 96

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.6 bits (122), Expect = 1e-10
 Identities = 18/96 (18%), Positives = 30/96 (31%), Gaps = 2/96 (2%)

Query: 2  PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESI--SRSIF 59
          P     N    A I     L C  +       Y     G ++ ++ +        S  + 
Sbjct: 3  PSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLN 62

Query: 60 DFKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
               L    ++  D G Y C A+N  G   +S  +
Sbjct: 63 PTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAV 98

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

 Score = 51.5 bits (122), Expect = 1e-10
 Identities = 19/103 (18%), Positives = 33/103 (32%), Gaps = 8/103 (7%)

Query: 2   PVIHVPN-QLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSE-------RYEVES 53
           P++           +  DV   C V +  +    W++                 +    +
Sbjct: 5   PILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAA 64

Query: 54  ISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRLY 96
              +       L I+ +T  D G Y C+A NS+G    S  L 
Sbjct: 65  GVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLT 107

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 126

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 50.8 bits (120), Expect = 4e-10
 Identities = 20/109 (18%), Positives = 37/109 (33%), Gaps = 17/109 (15%)

Query: 4   IHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVR-----------------DQGDMVISS 46
           +  P   + A +  +  L C +     +    V                  DQ       
Sbjct: 5   VIGPGHPIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPE 64

Query: 47  ERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
            R   E +  SI + K+ L I+ +   D G Y C  ++   + E+++ L
Sbjct: 65  YRGRTELLKESIGEGKVALRIQNVRFSDEGGYTCFFRDHSYQEEAAVEL 113

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 49.1 bits (116), Expect = 8e-10
 Identities = 18/75 (24%), Positives = 29/75 (38%), Gaps = 7/75 (9%)

Query: 18 DVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGS 77
           VTL C   A P +   W  +  ++ +  +        R        +    +   D GS
Sbjct: 24 KVTLTCRARANPPATYRWKMNGTELKMGPDS-------RYRLVAGDLVISNPVKAKDAGS 76

Query: 78 YKCIAKNSLGEVESS 92
          Y+C+A N+ G V S 
Sbjct: 77 YQCVATNARGTVVSR 91

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 48.3 bits (114), Expect = 1e-09
 Identities = 21/95 (22%), Positives = 31/95 (32%), Gaps = 13/95 (13%)

Query: 2  PVIHV-PNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFD 60
          P I         A     VTLEC+    P     W +  G              +     
Sbjct: 5  PSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQ------------TSKWLS 52

Query: 61 FKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
           +  L I+ +   D G+Y+C A+N  G      R+
Sbjct: 53 SEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRI 87

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 48.3 bits (114), Expect = 1e-09
 Identities = 22/94 (23%), Positives = 33/94 (35%), Gaps = 10/94 (10%)

Query: 2  PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDF 61
          P          A I +D+   C     P+    W+RD   +          +    I   
Sbjct: 2  PDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPL----------ASQNRIEVS 51

Query: 62 KMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
             L   K+   D G Y+C+A+N  G V +S  L
Sbjct: 52 GGELRFSKLVLEDSGMYQCVAENKHGTVYASAEL 85

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.0 bits (113), Expect = 2e-09
 Identities = 21/87 (24%), Positives = 33/87 (37%), Gaps = 10/87 (11%)

Query: 12 GAPIDT------DVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRL 65
          GAP+         V L C VE   +    WV+D   +    + Y    I  S   +   L
Sbjct: 1  GAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLY----IPVSEQHWIGFL 56

Query: 66 TIKKITKYDLGSYKCIAKNSLGEVESS 92
          ++K + + D G Y C  ++      S 
Sbjct: 57 SLKSVERSDAGRYWCQVEDGGETEISQ 83

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 47.9 bits (113), Expect = 2e-09
 Identities = 15/78 (19%), Positives = 27/78 (34%), Gaps = 6/78 (7%)

Query: 18 DVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGS 77
               C  +  P     W+R    +  S+          +   +K    I  +   D G+
Sbjct: 16 SARFSCDTDGEPVPTVTWLRKGQVLSTSARHQ------VTTTKYKSTFEISSVQASDEGN 69

Query: 78 YKCIAKNSLGEVESSIRL 95
          Y  + +NS G+ E+   L
Sbjct: 70 YSVVVENSEGKQEAEFTL 87

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.0 bits (113), Expect = 2e-09
 Identities = 19/95 (20%), Positives = 32/95 (33%), Gaps = 4/95 (4%)

Query: 4  IHVP---NQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFD 60
          +H       L     D    +   V+  PK    W  +   +  S +    +    +  +
Sbjct: 1  VHFAPTITFLESPTSDHHWCIPFTVKGNPKPALQWFYNGAILNES-KYICTKIHVTNHTE 59

Query: 61 FKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
          +   L +   T  + G Y  IAKN  G+ E  I  
Sbjct: 60 YHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISA 94

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.2 bits (113), Expect = 2e-09
 Identities = 19/101 (18%), Positives = 34/101 (33%), Gaps = 7/101 (6%)

Query: 2   PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDF 61
            ++   N+ +   + + + L C V      I YW  +   +         +  S      
Sbjct: 3   VIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPAN 62

Query: 62  KM------RLTIKKITKYDLGS-YKCIAKNSLGEVESSIRL 95
           K        L I +I        + C AKN+ G   + I+L
Sbjct: 63  KRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQL 103

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.7 bits (112), Expect = 3e-09
 Identities = 19/101 (18%), Positives = 31/101 (30%), Gaps = 12/101 (11%)

Query: 2  PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDM------VISSERYEVESIS 55
          P +                L C  E+ P   ++      D         S  R+ V S  
Sbjct: 3  PRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSS-- 60

Query: 56 RSIFDFKMRLTIKKITKYDL-GSYKCIAKNSLGEVESSIRL 95
                +  L I+ +      G Y+C   +S G  ++ I L
Sbjct: 61 ---SQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITL 98

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 47.7 bits (112), Expect = 3e-09
 Identities = 18/92 (19%), Positives = 30/92 (32%), Gaps = 6/92 (6%)

Query: 2  PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDF 61
          PV+      V    +    LEC +E   + + Y  +  G      E          +   
Sbjct: 3  PVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAA------LRKD 56

Query: 62 KMRLTIKKITKYDLGSYKCIAKNSLGEVESSI 93
          +  L   +    D G Y+C A+   G   S +
Sbjct: 57 EGSLVFLRPQASDEGHYQCFAETPAGVASSRV 88

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

 Score = 47.6 bits (112), Expect = 3e-09
 Identities = 22/94 (23%), Positives = 31/94 (32%), Gaps = 5/94 (5%)

Query: 2  PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDF 61
          P        +     +    +C VE YP     W +D   +  S              + 
Sbjct: 9  PYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQI-----DYDEEG 63

Query: 62 KMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
             LTI ++   D   Y C A NSLGE   +  L
Sbjct: 64 NCSLTISEVCGDDDAKYTCKAVNSLGEATCTAEL 97

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.2 bits (111), Expect = 5e-09
 Identities = 16/94 (17%), Positives = 35/94 (37%), Gaps = 3/94 (3%)

Query: 5  HVP-NQLVGAPID-TDVTLECYVEAYPKSINYWVRDQGDMV-ISSERYEVESISRSIFDF 61
          H+P +  +   ++     +   V+  P     W+ +   +   S    E    + +    
Sbjct: 2  HMPASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVR 61

Query: 62 KMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
             L + + T  + G+Y  +A N  G+  +SI  
Sbjct: 62 HGCLRLNQPTHVNNGNYTLLAANPFGQASASIMA 95

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 44.6 bits (104), Expect = 4e-08
 Identities = 17/94 (18%), Positives = 27/94 (28%), Gaps = 6/94 (6%)

Query: 2  PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDF 61
          P I   ++ +         LE      P     W        ++ E              
Sbjct: 3  PKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAK------SS 56

Query: 62 KMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
             +      + D G+YK   KN LGE E+   +
Sbjct: 57 TTSIFFPSAKRADSGNYKLKVKNELGEDEAIFEV 90

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.1 bits (103), Expect = 6e-08
 Identities = 14/95 (14%), Positives = 26/95 (27%), Gaps = 11/95 (11%)

Query: 2  PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDF 61
          P   V   ++ +     VTL C       +       +     S                
Sbjct: 7  PAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSR--------WAGM 58

Query: 62 KMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRLY 96
            RL ++ +  +D G+Y C           ++ L 
Sbjct: 59 GRRLLLRSVQLHDSGNYSCYRAGRPA---GTVHLL 90

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]} Length = 115

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.7 bits (104), Expect = 7e-08
 Identities = 19/96 (19%), Positives = 28/96 (29%), Gaps = 2/96 (2%)

Query: 2   PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWV-RDQGDMVISSERYEVESISRSIFD 60
           P I    Q   A       ++C++ + P          +  +   +          +   
Sbjct: 7   PPIISSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEG 66

Query: 61  FKMRLTIKKIT-KYDLGSYKCIAKNSLGEVESSIRL 95
               LTI  I        Y C A NS G     IRL
Sbjct: 67  VISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRL 102

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.3 bits (103), Expect = 1e-07
 Identities = 13/101 (12%), Positives = 29/101 (28%), Gaps = 23/101 (22%)

Query: 18  DVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIF------------------ 59
            + L+  +   P     W +       +  R   ++   +                    
Sbjct: 26  KLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCETEGRV 85

Query: 60  -----DFKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
                  +   T++   K D G Y    KN +GE + ++ +
Sbjct: 86  RVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTV 126

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.6 bits (101), Expect = 1e-07
 Identities = 20/96 (20%), Positives = 32/96 (33%), Gaps = 2/96 (2%)

Query: 2   PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVI--SSERYEVESISRSIF 59
             +H     V  P +  V L C    +      W  DQGD             S    + 
Sbjct: 5   VTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVT 64

Query: 60  DFKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
                +T K +T+ D G+Y C+     G     +++
Sbjct: 65  FLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKV 100

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.0 bits (100), Expect = 2e-07
 Identities = 14/79 (17%), Positives = 26/79 (32%), Gaps = 7/79 (8%)

Query: 17 TDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLG 76
           D  + C V +       W     D+++  +          I      L I+ I K D G
Sbjct: 17 EDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRF-------IVLSNNYLQIRGIKKTDEG 69

Query: 77 SYKCIAKNSLGEVESSIRL 95
          +Y+C  +       +   +
Sbjct: 70 TYRCEGRILARGEINFKDI 88

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.3 bits (98), Expect = 3e-07
 Identities = 15/80 (18%), Positives = 27/80 (33%), Gaps = 10/80 (12%)

Query: 17 TDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLG 76
           DVT  C  ++   +         +  + S   +   I          LTI+ +   D G
Sbjct: 18 ADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMDFNGI----------LTIRNVQPSDAG 67

Query: 77 SYKCIAKNSLGEVESSIRLY 96
          +Y C   N     + +  L+
Sbjct: 68 TYVCTGSNMFAMDQGTATLH 87

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.6 bits (96), Expect = 9e-07
 Identities = 13/100 (13%), Positives = 25/100 (25%), Gaps = 6/100 (6%)

Query: 2   PVIHVPNQLVGAPIDTDVTLECYVEAYPKSIN---YWVRDQGDMVISSERYEVESISRSI 58
            +  +  Q     +   +T    V            W + +   + S     ++      
Sbjct: 5   GLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYD 64

Query: 59  FDFKM---RLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
              K+    L I        G Y+C          S+  L
Sbjct: 65  RASKVYLFELHITDAQPAFTGGYRCEVSTKDKFDCSNFNL 104

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.5 bits (96), Expect = 1e-06
 Identities = 21/95 (22%), Positives = 37/95 (38%), Gaps = 5/95 (5%)

Query: 4  IHVPNQLVGAP---IDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFD 60
          ++ P ++V      +  +  +E  V   P    +W+ +   +  S   +        I +
Sbjct: 2  VYYPPRVVSLEEPELRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISE 61

Query: 61 FKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
              L   K T Y+ G+Y  IAKN LG    +I  
Sbjct: 62 --GCLLFNKPTHYNNGNYTLIAKNPLGTANQTING 94

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 40.7 bits (94), Expect = 1e-06
 Identities = 20/95 (21%), Positives = 36/95 (37%), Gaps = 5/95 (5%)

Query: 2  PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDF 61
          PV    ++ + A       + C   + P     + ++  D+  + E      I+R     
Sbjct: 4  PVPQYVSKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDR----ITRHNRTS 59

Query: 62 KMRLTIKKITKYDLGSYKCIAKNSLGEVES-SIRL 95
            RL  K     D G Y C   N +G+ +  S++L
Sbjct: 60 GKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKL 94

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 113

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.4 bits (93), Expect = 2e-06
 Identities = 13/85 (15%), Positives = 26/85 (30%), Gaps = 6/85 (7%)

Query: 17  TDVTLECYVEAYPKS----INYWVRDQGDMVISSERYEVESISRSIF--DFKMRLTIKKI 70
            D+T    V+A        I ++     D+   + ++     +       +   + I K 
Sbjct: 16  EDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKA 75

Query: 71  TKYDLGSYKCIAKNSLGEVESSIRL 95
                G+Y+C           S  L
Sbjct: 76  KDNFAGNYRCEVTYKDKFDSCSFDL 100

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.5 bits (93), Expect = 2e-06
 Identities = 14/96 (14%), Positives = 28/96 (29%), Gaps = 2/96 (2%)

Query: 2  PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISS--ERYEVESISRSIF 59
            ++     V  P +  + L C    +      W   QG                +  + 
Sbjct: 2  GSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVT 61

Query: 60 DFKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
               +T   +T+ D G Y C+     G+    + +
Sbjct: 62 FSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSI 97

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.0 bits (90), Expect = 6e-06
 Identities = 16/83 (19%), Positives = 29/83 (34%), Gaps = 5/83 (6%)

Query: 13 APIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITK 72
          A     V LEC V +   +   W ++  +++   +      +       K  L I+  TK
Sbjct: 12 AYCGERVELECEV-SEDDANVKWFKNGEEIIPGPKSRYRIRVEGK----KHILIIEGATK 66

Query: 73 YDLGSYKCIAKNSLGEVESSIRL 95
           D   Y  +        + S+ L
Sbjct: 67 ADAAEYSVMTTGGQSSAKLSVDL 89

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.9 bits (89), Expect = 6e-06
 Identities = 13/75 (17%), Positives = 24/75 (32%), Gaps = 3/75 (4%)

Query: 18 DVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGS 77
            T +C       + +       D+  +  +        S   F     +   TK D G 
Sbjct: 18 FATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEI---KVTSSRRFIASFNVVNTTKRDAGK 74

Query: 78 YKCIAKNSLGEVESS 92
          Y+C+ +   G   S+
Sbjct: 75 YRCMIRTEGGVGISN 89

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.7 bits (89), Expect = 6e-06
 Identities = 12/89 (13%), Positives = 29/89 (32%), Gaps = 3/89 (3%)

Query: 9  QLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMR---L 65
          Q +   +  +VT         K + +  +      + +  +   S  ++          L
Sbjct: 3  QQIYGVVYGNVTFHVPSNVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSL 62

Query: 66 TIKKITKYDLGSYKCIAKNSLGEVESSIR 94
          TI  +T  D   Y+  + N    ++  + 
Sbjct: 63 TIYNLTSSDEDEYEMESPNITDTMKFFLY 91

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.1 bits (87), Expect = 2e-05
 Identities = 14/75 (18%), Positives = 20/75 (26%)

Query: 18 DVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGS 77
             LEC V+      +                   S           L  + +   D GS
Sbjct: 20 PFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISFFILHFEPVLPNDNGS 79

Query: 78 YKCIAKNSLGEVESS 92
          Y+C A      +ES 
Sbjct: 80 YRCSANFQSNLIESH 94

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.7 bits (81), Expect = 8e-05
 Identities = 12/79 (15%), Positives = 24/79 (30%), Gaps = 19/79 (24%)

Query: 17 TDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLG 76
          +  T  C     P      ++D    +                          +T+   G
Sbjct: 20 SQQTPMCQAWGNPLPELKCLKDGTFPLPIG-------------------ESVTVTRDLEG 60

Query: 77 SYKCIAKNSLGEVESSIRL 95
          +Y C A+++ GEV   + +
Sbjct: 61 TYLCRARSTQGEVTREVTV 79

>d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 96

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.4 bits (80), Expect = 1e-04
 Identities = 22/95 (23%), Positives = 32/95 (33%), Gaps = 12/95 (12%)

Query: 2  PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDF 61
          P + V N  V       VTL C       +I +    Q             +   ++   
Sbjct: 6  PFLQVTNTTVKE--LDSVTLTCLSNDIGANIQWLFNSQSLQ---------LTERMTLSQN 54

Query: 62 KMRLTIKKITKYDLGSYKCIAKNSLGEVES-SIRL 95
             L I  I + D G Y+C   N +    S SI+L
Sbjct: 55 NSILRIDPIKREDAGEYQCEISNPVSVRRSNSIKL 89

>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 33.5 bits (76), Expect = 7e-04
 Identities = 14/88 (15%), Positives = 28/88 (31%), Gaps = 3/88 (3%)

Query: 8  NQLVGAPIDTDVTLECYVEAYPKSINY--WVRDQGDMVISSERYEVESISRSIFDFKM-R 64
          +  V   +   + L          I+   W R    +     + +    S +        
Sbjct: 2  SGTVWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGD 61

Query: 65 LTIKKITKYDLGSYKCIAKNSLGEVESS 92
          L IK +T+ D G+Y     ++ G    +
Sbjct: 62 LKIKNLTRDDSGTYNVTVYSTNGTRILN 89

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.3 bits (75), Expect = 0.001
 Identities = 11/77 (14%), Positives = 25/77 (32%), Gaps = 6/77 (7%)

Query: 18 DVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGS 77
           + L   +  +   + +    Q   +  S+              K  LTI + +  D  +
Sbjct: 23 KIRLTVELADHDAEVKWLKNGQEIQMSGSKYIFESI------GAKRTLTISQCSLADDAA 76

Query: 78 YKCIAKNSLGEVESSIR 94
          Y+C+        E  ++
Sbjct: 77 YQCVVGGEKCSTELFVK 93

>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 33.1 bits (74), Expect = 0.001
 Identities = 13/76 (17%), Positives = 23/76 (30%), Gaps = 5/76 (6%)

Query: 18 DVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGS 77
           V   C    +  +++Y                      +       L I K    DLG+
Sbjct: 21 GVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTT-----GNLYIAKTEASDLGN 75

Query: 78 YKCIAKNSLGEVESSI 93
          Y C A + +  +  S+
Sbjct: 76 YSCFATSHIDFITKSV 91

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.6 bits (73), Expect = 0.001
 Identities = 11/91 (12%), Positives = 19/91 (20%), Gaps = 14/91 (15%)

Query: 2  PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDF 61
          P   V  + +  P +    L C     P+ +          +                  
Sbjct: 2  PFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPAP------------- 48

Query: 62 KMRLTIKKITKYDLGSYKCIAKNSLGEVESS 92
               +          + C A N  G   S 
Sbjct: 49 -SPSVLNVTGVTQSTMFSCEAHNLKGLASSR 78

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.5 bits (73), Expect = 0.002
 Identities = 14/88 (15%), Positives = 29/88 (32%), Gaps = 15/88 (17%)

Query: 14 PIDTDVTLECYVEAYPKSIN------YWVRDQGDMVISSERYEVESISRSIFDFKMRLTI 67
          P+  D  L C    + K+ N       W +D   +++ +  +               L +
Sbjct: 12 PVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVKDR---------LIV 62

Query: 68 KKITKYDLGSYKCIAKNSLGEVESSIRL 95
            + +   G+Y C A  +    +  I  
Sbjct: 63 MNVAEKHRGNYTCHASYTYLGKQYPITR 90

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.6 bits (73), Expect = 0.002
 Identities = 16/84 (19%), Positives = 27/84 (32%), Gaps = 7/84 (8%)

Query: 13 APIDTDVTLECYVEA-YPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKIT 71
          +  +      C +     K    W +D     +S+E+         I   K +L      
Sbjct: 14 SSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQA------SRIHQHKEKLWFVPAK 67

Query: 72 KYDLGSYKCIAKNSLGEVESSIRL 95
            D G Y C+ +NS   +   I  
Sbjct: 68 VEDSGHYYCVVRNSSYCLRIKISA 91

>d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Semaphorin 4d Ig-like domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 31.9 bits (71), Expect = 0.003
 Identities = 9/78 (11%), Positives = 28/78 (35%), Gaps = 9/78 (11%)

Query: 18 DVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGS 77
             L+C  ++    + +  ++      S +   +          +  L I  +++ D G 
Sbjct: 14 TAELKCSQKSNLARVFWKFQNGVLKAESPKYGLM---------GRKNLLIFNLSEGDSGV 64

Query: 78 YKCIAKNSLGEVESSIRL 95
          Y+C+++  +        +
Sbjct: 65 YQCLSEERVKNKTVFQVV 82

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 31.8 bits (71), Expect = 0.004
 Identities = 11/97 (11%), Positives = 27/97 (27%), Gaps = 12/97 (12%)

Query: 2  PVIHVPNQLVGAPIDTDVTLECYVEA---YPKSINYWVRDQGDMVISSERYEVESISRSI 58
            + +       P+   +TL C VE      +     +R + ++       E   ++   
Sbjct: 5  ERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPAVGEPAEVT--- 61

Query: 59 FDFKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
                 T+     +    + C  +  L      +  
Sbjct: 62 ------TTVLVRRDHHGAQFSCRTELDLRPQGLELFE 92

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	96
d1wiua_	93	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.81
d1cs6a4	89	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.81
d1g1ca_	98	Titin {Human (Homo sapiens), different modules [Ta	99.8
d1fhga_	102	Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103	99.8
d2cqva1	101	Telokin {Human (Homo sapiens) [TaxId: 9606]}	99.78
d1koaa1	97	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.78
d1biha4	89	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.77
d1cs6a3	91	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.75
d1tnna_	91	Titin {Human (Homo sapiens), different modules [Ta	99.74
d1qz1a3	100	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.74
d3dara1	97	Fibroblast growth factor receptor, FGFR {Human (Ho	99.73
d1vcaa2	90	Vascular cell adhesion molecule-1 (VCAM-1) {Human	99.73
d1iray3	107	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.73
d2fdbp2	109	Fibroblast growth factor receptor, FGFR {Human (Ho	99.73
d3b5ha1	101	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	99.73
d1gsma1	90	Mucosal addressin cell adhesion molecule-1 (MADCAM	99.72
d2avga1	110	Cardiac myosin binding protein C, different domain	99.7
d2ifga1	92	High affinity nerve growth factor receptor TrkA, d	99.7
d1epfa2	92	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.69
d1epfa1	97	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.69
d1gl4b_	89	Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId:	99.69
d1f97a1	102	Junction adhesion molecule, JAM, N-terminal domain	99.68
d1biha1	94	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.67
d1rhfa1	91	Tyrosine-protein kinase receptor tyro3, N-terminal	99.67
d1biha3	97	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.66
d2nxyb2	84	CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9	99.66
d2aw2a1	104	B- and T-lymphocyte attenuator CD272 {Human (Homo	99.66
d1rhfa2	85	Tyrosine-protein kinase receptor tyro3, second dom	99.66
d1wwbx_	103	Ligand binding domain of trkB receptor {Human (Hom	99.65
d1cs6a1	97	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.65
d2dava1	113	Myosin-binding protein C, slow-type {Human (Homo s	99.64
d1n26a1	93	Interleukin-6 receptor alpha chain, N-terminal dom	99.64
d1nbqa1	105	Junction adhesion molecule, JAM, N-terminal domain	99.63
d1gxea_	130	Cardiac myosin binding protein C, different domain	99.63
d2c9aa1	96	Receptor-type tyrosine-protein phosphatase mu {Hum	99.61
d1pd6a_	94	Cardiac myosin binding protein C, different domain	99.6
d2oz4a3	84	Intercellular adhesion molecule-1, ICAM-1 {Human (	99.59
d1wwca_	105	NT3 binding domain of trkC receptor {Human (Homo s	99.58
d1cs6a2	105	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.57
d1fnla1	84	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.55
d1he7a_	107	High affinity nerve growth factor receptor TrkA, d	99.55
d1x44a1	90	Myosin-binding protein C, slow-type {Human (Homo s	99.54
d1olza1	92	Semaphorin 4d Ig-like domain {Human (Homo sapiens)	99.53
d1nbqa2	104	Junction adhesion molecule, JAM, C-terminal domain	99.53
d2crya1	115	Kin of IRRE-like protein 3, KIRREL3 {Human (Homo s	99.52
d1f97a2	110	Junction adhesion molecule, JAM, C-terminal domain	99.52
d1l6za2	96	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-t	99.5
d1tiua_	89	Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxI	99.5
d1f2qa1	82	IgE high affinity receptor alpha subunit {Human (H	99.49
d1iray1	101	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.49
d2fcba2	88	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.48
d1iama1	103	Intercellular cell adhesion molecule-1 (ICAM-1) {H	99.47
d1iray2	103	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.46
d2fcba1	85	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.45
d1fnla2	89	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.45
d1f2qa2	89	IgE high affinity receptor alpha subunit {Human (H	99.36
d1biha2	111	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.3
d1nezg_	122	CD8 {Mouse (Mus musculus) [TaxId: 10090]}	99.3
d1pkoa_	126	Myelin oligodendrocyte glycoprotein (MOG) {Rat (Ra	99.29
d1zxqa1	106	Intercellular cell adhesion molecule-2 (ICAM-2) {H	99.29
d1ccza1	93	CD2-binding domain of CD58, N-terminal domain {Hum	99.23
d1a0ql1	106	Immunoglobulin light chain kappa variable domain,	99.15
d2bnqd1	113	T-cell antigen receptor {Human (Homo sapiens), alp	99.14
d2cdea1	114	T-cell antigen receptor {Human (Homo sapiens), bet	99.14
d1j1pl_	107	Immunoglobulin light chain kappa variable domain,	99.14
d1i8ka_	106	Immunoglobulin light chain kappa variable domain,	99.13
d1c5cl1	107	Immunoglobulin light chain kappa variable domain,	99.13
d1kcvl1	107	Immunoglobulin light chain kappa variable domain,	99.13
d1vesa_	113	Novel antigen receptor 12Y-2 {Spotted wobbegong (O	99.12
d1tjgl1	107	Immunoglobulin light chain kappa variable domain,	99.11
d1lp9e1	115	T-cell antigen receptor {Mouse (Mus musculus), alp	99.09
d1d5il1	107	Immunoglobulin light chain kappa variable domain,	99.08
d1sq2n_	112	Novel antigen receptor (against lysozyme) {Nurse s	99.08
d1u3ha1	110	T-cell antigen receptor {Mouse (Mus musculus), alp	99.07
d1mexl1	107	Immunoglobulin light chain kappa variable domain,	99.07
d3bp5a1	114	Programmed cell death protein 1, PD1, extracellula	99.06
d1jhll_	108	Immunoglobulin light chain kappa variable domain,	99.06
d1eaja_	124	Coxsackie virus and adenovirus receptor (Car), dom	99.05
d1tvda_	116	T-cell antigen receptor {Human (Homo sapiens), del	99.05
d1ospl1	107	Immunoglobulin light chain kappa variable domain,	99.05
d1lk3l1	106	Immunoglobulin light chain kappa variable domain,	99.04
d1op3k1	106	Immunoglobulin light chain kappa variable domain,	99.03
d1bd2d1	111	T-cell antigen receptor {Human (Homo sapiens), alp	99.03
d2ij0c1	118	T-cell antigen receptor {Human (Homo sapiens), bet	99.02
d8faba1	103	Immunoglobulin light chain lambda variable domain,	99.02
d1bwwa_	109	Immunoglobulin light chain kappa variable domain,	99.02
d1hxmb1	123	T-cell antigen receptor {Human (Homo sapiens), del	99.02
d1mqkl_	109	Immunoglobulin light chain kappa variable domain,	99.02
d1j8hd1	115	T-cell antigen receptor {Human (Homo sapiens), alp	99.01
d1akjd_	114	CD8 {Human (Homo sapiens) [TaxId: 9606]}	98.99
d2nxyb1	97	CD4 V-set domains {Human (Homo sapiens) [TaxId: 96	98.99
d1i9ea_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.97
d2ak4d1	114	T-cell antigen receptor {Human (Homo sapiens), alp	98.96
d2fx7l1	108	Immunoglobulin light chain kappa variable domain,	98.94
d2aq2a1	110	T-cell antigen receptor {Mouse (Mus musculus), bet	98.94
d3cx5k1	107	Immunoglobulin light chain kappa variable domain,	98.94
d1h5ba_	113	T-cell antigen receptor {Mouse (Mus musculus), alp	98.94
d1ucta1	99	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	98.93
d1fo0a_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.93
d1hnga1	98	CD2, first domain {Rat (Rattus norvegicus) [TaxId:	98.92
d1rzfl1	111	Immunoglobulin light chain lambda variable domain,	98.92
d1yqvl1	104	Immunoglobulin light chain kappa variable domain,	98.91
d2atpb1	115	CD8 {Mouse (Mus musculus), beta-chain [TaxId: 1009	98.91
d1smoa_	113	TREM-1 (triggering receptor expressed on myeloid c	98.91
d1oaql_	110	Immunoglobulin light chain lambda variable domain,	98.9
d1lgva1	112	Immunoglobulin light chain lambda variable domain,	98.88
d2gj6d1	94	T-cell antigen receptor {Mouse (Mus musculus), bet	98.88
d1w72l1	109	Immunoglobulin light chain lambda variable domain,	98.88
d1ypzf1	120	T-cell antigen receptor {Human (Homo sapiens), gam	98.88
d1xeda_	116	Polymeric-immunoglobulin receptor, PIGR {Human (Ho	98.88
d1olla1	95	Ligand binding domain of NK receptor NKp46 {Human	98.87
d1ogad1	115	T-cell antigen receptor {Human (Homo sapiens), alp	98.87
d1f3rb2	119	Immunoglobulin light chain kappa variable domain,	98.87
d1hxma1	120	T-cell antigen receptor {Human (Homo sapiens), gam	98.87
d1kgce1	112	T-cell antigen receptor {Human (Homo sapiens), bet	98.84
d1nfde1	108	Immunoglobulin light chain lambda variable domain,	98.83
d1n4xl_	113	Immunoglobulin light chain kappa variable domain,	98.83
d1ac6a_	110	T-cell antigen receptor {Mouse (Mus musculus), alp	98.82
d2gsia1	111	Immunoglobulin light chain kappa variable domain,	98.82
d1mjul1	112	Immunoglobulin light chain kappa variable domain,	98.82
d2rhea_	114	Immunoglobulin light chain lambda variable domain,	98.82
d2esve1	111	T-cell antigen receptor {Human (Homo sapiens), bet	98.81
d1q9ra1	113	Immunoglobulin light chain kappa variable domain,	98.81
d2ntsp1	113	T-cell antigen receptor {Human (Homo sapiens), bet	98.81
d1j05a_	111	Immunoglobulin light chain kappa variable domain,	98.81
d2esvd1	110	T-cell antigen receptor {Human (Homo sapiens), alp	98.8
d1ogae1	114	T-cell antigen receptor {Human (Homo sapiens), bet	98.79
d1cd0a_	111	Immunoglobulin light chain lambda variable domain,	98.79
d1hkfa_	108	NK cell activating receptor NKP44 {Human (Homo sap	98.77
d1nfdb1	113	T-cell antigen receptor {Mouse (Mus musculus), bet	98.74
d1ncwl1	112	Immunoglobulin light chain kappa variable domain,	98.73
d1kgcd1	112	T-cell antigen receptor {Human (Homo sapiens), alp	98.68
d2bnub1	112	T-cell antigen receptor {Human (Homo sapiens), bet	98.67
d1j8he1	113	T-cell antigen receptor {Human (Homo sapiens), bet	98.67
d1fo0b_	112	T-cell antigen receptor {Mouse (Mus musculus), bet	98.65
d1neua_	119	Myelin membrane adhesion molecule P0 {Rat (Rattus	98.64
d1nkra1	96	Killer cell inhibitory receptor {Human (Homo sapie	98.64
d2cdeb1	112	T-cell antigen receptor {Human (Homo sapiens), bet	98.63
d1ucta2	96	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	98.61
d1olla2	93	Ligand binding domain of NK receptor NKp46 {Human	98.61
d1dr9a1	105	CD80, N-terminal domain {Human (Homo sapiens) [Tax	98.6
d1u9ka_	110	TREM-1 (triggering receptor expressed on myeloid c	98.59
d1nkra2	99	Killer cell inhibitory receptor {Human (Homo sapie	98.57
d1dqta_	117	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	98.55
d1i8lc_	118	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	98.55
d1ymmd1	96	T-cell antigen receptor {Human (Homo sapiens), alp	98.54
d1l6za1	107	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-t	98.51
d1vcaa1	109	Vascular cell adhesion molecule-1 (VCAM-1) {Human	98.49
d2g5ra1	121	N-terminal domain of sialic acid binding Ig-like l	98.46
d1ncna_	110	CD86 (b7-2), N-terminal domain {Human (Homo sapien	98.39
d1muja1	100	Class II MHC alpha chain, C-terminal domain {Mouse	98.39
d1qfoa_	118	N-terminal domain of sialoadhesin {Mouse (Mus musc	98.36
d1q0xl2	102	Immunoglobulin light chain lambda constant domain,	98.35
d2agjh1	120	Immunoglobulin heavy chain variable domain, VH {En	98.31
d1ugna2	98	Ligand binding domain of lir-1 (ilt2) {Human (Homo	98.29
d1i3ua_	127	Camelid IG heavy chain variable domain, VHh {Llama	98.27
d1kxvc_	119	Camelid IG heavy chain variable domain, VHh {Camel	98.27
d1fnga1	101	Class II MHC alpha chain, C-terminal domain {Mouse	98.24
d1rzfl2	102	Immunoglobulin light chain lambda constant domain,	98.22
d1iqdb1	117	Immunoglobulin heavy chain variable domain, VH {Hu	98.2
d1ugna1	96	Ligand binding domain of lir-1 (ilt2) {Human (Homo	98.16
d1k5nb_	100	beta2-microglobulin {Human (Homo sapiens) [TaxId:	98.14
d7fabh1	116	Immunoglobulin heavy chain variable domain, VH {Hu	98.13
d1uvqa1	99	Class II MHC alpha chain, C-terminal domain {Human	98.13
d1yjdc1	118	CD28 {Human (Homo sapiens) [TaxId: 9606]}	98.12
d1fp5a2	105	Immunoglobulin heavy chain epsilon constant domain	98.11
d1dr9a2	95	CD80, second domain {Human (Homo sapiens) [TaxId:	98.1
d1hdmb1	98	Class II MHC beta chain, C-terminal domain {Human	98.1
d1f3dh1	115	Immunoglobulin heavy chain variable domain, VH {Mo	98.1
d1sjva_	107	Camelid IG heavy chain variable domain, VHh {Llama	98.1
d1qnzh_	119	Immunoglobulin heavy chain variable domain, VH {Mo	98.09
d1dn0b1	120	Immunoglobulin heavy chain variable domain, VH {Hu	98.08
d1a2yb_	116	Immunoglobulin heavy chain variable domain, VH {Mo	98.07
d1indh1	114	Immunoglobulin heavy chain variable domain, VH {Mo	98.07
d1eapb1	119	Immunoglobulin heavy chain variable domain, VH {Mo	98.06
d1nlbh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	98.06
d1o0va1	104	Immunoglobulin heavy chain epsilon constant domain	98.06
d1tjgh1	132	Immunoglobulin heavy chain variable domain, VH {En	98.05
d1um5h1	117	Immunoglobulin heavy chain variable domain, VH {Mo	98.05
d1ol0a_	121	Immunoglobulin heavy chain variable domain, VH {En	98.04
d1ai1h1	120	Immunoglobulin heavy chain variable domain, VH {Mo	98.02
d1j05b_	121	Immunoglobulin heavy chain variable domain, VH {Mo	98.01
d2jelh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	98.0
d1c5db1	117	Immunoglobulin heavy chain variable domain, VH {Ra	98.0
d2ck0h1	109	Immunoglobulin heavy chain variable domain, VH {Mo	98.0
d1d5mb1	98	Class II MHC beta chain, C-terminal domain {Human	97.99
d1mqkh_	123	Immunoglobulin heavy chain variable domain, VH {Mo	97.99
d1pg7x1	120	Immunoglobulin heavy chain variable domain, VH {Mo	97.98
d2p49b1	121	Camelid IG heavy chain variable domain, VHh {Camel	97.98
d1jpth1	117	Immunoglobulin heavy chain variable domain, VH {En	97.97
d1lk2b_	99	beta2-microglobulin {Mouse (Mus musculus) [TaxId:	97.96
d1uvqb1	97	Class II MHC beta chain, C-terminal domain {Human	97.96
d1vgeh1	122	Immunoglobulin heavy chain variable domain, VH {Hu	97.95
d1r0ah1	123	Immunoglobulin heavy chain variable domain, VH {Mo	97.94
d1ncwh1	119	Immunoglobulin heavy chain variable domain, VH {Mo	97.92
d1cqka_	101	Immunoglobulin heavy chain gamma constant domain 3	97.92
d1etzb1	126	Immunoglobulin heavy chain variable domain, VH {Mo	97.91
d1mjul2	107	Immunoglobulin light chain kappa constant domain,	97.91
d1rihh1	125	Immunoglobulin heavy chain variable domain, VH {Mo	97.91
d1oari_	103	Immunoglobulin heavy chain variable domain, VH {Ra	97.89
d1igtb4	102	Immunoglobulin heavy chain gamma constant domain 3	97.87
d1dfbh1	126	Immunoglobulin heavy chain variable domain, VH {Hu	97.87
d1rjca1	126	Camelid IG heavy chain variable domain, VHh {Camel	97.87
d1i1ca2	102	Immunoglobulin heavy chain gamma constant domain 3	97.86
d1ad9b1	120	Immunoglobulin heavy chain variable domain, VH {En	97.86
d1l6xa2	102	Immunoglobulin heavy chain gamma constant domain 3	97.85
d1jnhb1	117	Immunoglobulin heavy chain variable domain, VH {Mo	97.85
d1ct8b1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.85
d1fn4b1	116	Immunoglobulin heavy chain variable domain, VH {Ra	97.84
d2nxyd1	128	Immunoglobulin heavy chain variable domain, VH {Hu	97.83
d1n0xh1	127	Immunoglobulin heavy chain variable domain, VH {Hu	97.83
d2fbjh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.82
d1fltx_	95	Second domain of the Flt-1 receptor {Human (Homo s	97.82
d1op3h1	125	Immunoglobulin heavy chain variable domain, VH {En	97.81
d1zvya1	124	Camelid IG heavy chain variable domain, VHh {Camel	97.8
d1rhhb1	130	Immunoglobulin heavy chain variable domain, VH {Hu	97.8
d1mjuh1	116	Immunoglobulin heavy chain variable domain, VH {Mo	97.8
d2fx7h1	127	Immunoglobulin heavy chain variable domain, VH {Hu	97.78
d1rz7h1	119	Immunoglobulin heavy chain variable domain, VH {Hu	97.78
d2mhaa1	89	Class I MHC, alpha-3 domain {Mouse (Mus musculus)	97.78
d1yedb1	124	Immunoglobulin heavy chain variable domain, VH {Mo	97.78
d1c5cl2	107	Immunoglobulin light chain kappa constant domain,	97.77
d1rzga1	130	Immunoglobulin heavy chain variable domain, VH {Hu	97.75
d2b1hh1	124	Immunoglobulin heavy chain variable domain, VH {En	97.75
d1lo4h1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.74
d3frua1	91	Fc (IgG) receptor, alpha-3 domain {Rat (Rattus nor	97.73
d1mfah1	117	Immunoglobulin heavy chain variable domain, VH {Mo	97.73
d1de4a1	94	Hemochromatosis protein Hfe, alpha-3 domain {Human	97.72
d1t7va1	94	Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Hu	97.69
d2h26a1	96	CD1, alpha-3 domain {Human (Homo sapiens), CD1a [T	97.69
d1ow0a2	108	Immunoglobulin heavy chain alpha constant domain 3	97.68
d1bz7b1	122	Immunoglobulin heavy chain variable domain, VH {Mo	97.68
d1q9rb1	122	Immunoglobulin heavy chain variable domain, VH {Mo	97.67
d3cx5j1	127	Immunoglobulin heavy chain variable domain, VH {Mo	97.66
d1lmka1	126	Immunoglobulin heavy chain variable domain, VH {Mo	97.66
d1dlfh_	120	Immunoglobulin heavy chain variable domain, VH {Mo	97.66
d1nfdf1	121	Immunoglobulin heavy chain variable domain, VH {Ha	97.64
d1rzfh1	133	Immunoglobulin heavy chain variable domain, VH {Hu	97.63
d1k5na1	95	Class I MHC, alpha-3 domain {Human (Homo sapiens)	97.61
d2fb4h1	127	Immunoglobulin heavy chain variable domain, VH {Hu	97.59
d1fp5a1	103	Immunoglobulin heavy chain epsilon constant domain	97.59
d1ieha_	135	Camelid IG heavy chain variable domain, VHh {Llama	97.56
d3b5ha2	80	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	97.56
d1kcvh2	101	Immunoglobulin heavy chain gamma constant domain 1	97.55
d1xaua_	104	B and T lymphocyte attenuator, Btla {Mouse (Mus mu	97.55
d1hxmb2	107	T-cell antigen receptor {Human (Homo sapiens), del	97.52
d1b2wh1	117	Immunoglobulin heavy chain variable domain, VH {En	97.5
d3c2ah1	131	Immunoglobulin heavy chain variable domain, VH {Hu	97.46
d1mjuh2	102	Immunoglobulin heavy chain gamma constant domain 1	97.41
d1nfde2	104	Immunoglobulin light chain lambda constant domain,	97.38
d1c5ch2	103	Immunoglobulin heavy chain gamma constant domain 1	97.36
d1hyrc1	94	Class I MHC homolog, alpha-3 domain {Human (Homo s	97.29
d1dn0b2	105	Immunoglobulin heavy chain mu constant domain 1, C	97.09
d1hdma1	103	Class II MHC alpha chain, C-terminal domain {Human	97.09
d1i1ca1	103	Immunoglobulin heavy chain gamma constant domain 2	97.08
d1igtb3	119	Immunoglobulin heavy chain gamma constant domain 2	96.98
d1l6xa1	105	Immunoglobulin heavy chain gamma constant domain 2	96.96
d1ogae2	127	T-cell antigen receptor {Human (Homo sapiens), bet	96.87
d1pfca_	111	Immunoglobulin heavy chain gamma constant domain 3	96.5
d2fbjh2	102	Immunoglobulin heavy chain alpha constant domain 1	96.17
d1jbja2	100	CD3 epsilon chain ectodomain fragment {Mouse (Mus	96.16
d1u58a1	98	Immunomodulatory protein m144, alpha-3 domain {Mur	95.93
d1xiwa_	91	CD3 epsilon chain ectodomain fragment {Human (Homo	95.0
d3d85d1	87	The p40 domain of interleukin-12 (IL-12 beta chain	94.53
d1xiwb_	74	CD3 delta chain ectodomain fragment {Human (Homo s	94.05
d1ow0a1	101	Immunoglobulin heavy chain alpha constant domain 2	94.03
d1sy6a1	81	CD3 gamma chain ectodomain fragment {Human (Homo s	93.27
d1jbja1	86	CD3 gamma chain ectodomain fragment {Mouse (Mus mu	92.4
d1igyb3	116	Immunoglobulin heavy chain gamma constant domain 2	89.28
d1hxma2	86	T-cell antigen receptor {Human (Homo sapiens), gam	88.29
d1i1ra1	100	Cytokine receptor gp130 cytokine-binding domains {	80.23

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.81  E-value=4.5e-19  Score=79.64  Aligned_cols=89  Identities=20%  Similarity=0.255  Sum_probs=72.7

Q ss_pred             CCeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEE
Q psy4613           1 HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKC   80 (96)
Q Consensus         1 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c   80 (96)
                      +|.+..+...+.+..|+.+.|.|.+.+.|.|.+.|++++..+. ...+.......     ....|.|.++...|.|.|.|
T Consensus         2 ~P~i~~~~~~~~v~~G~~~~l~c~~~g~P~p~v~W~~~~~~i~-~~~~~~~~~~~-----~~~~L~I~~~~~~D~G~Y~c   75 (93)
T d1wiua_           2 KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAA-LAPELLVDAKS-----STTSIFFPSAKRADSGNYKL   75 (93)
T ss_dssp             CCEECCCCCEEEECSSBCCEEEEEEECCSSCEEEEECSSSSCB-CSTTSEEEEET-----TEEEEECTTBCGGGCEEEEE
T ss_pred             CCeEEeCCCcEEEeCCCeEEEEEEEEEecCCeEEEEeeeeece-eeeeeeecccc-----cceeeccccccccccEEEEE
Confidence            5888888888999999999999999999999999999876554 33344333221     34679999999999999999


Q ss_pred             EEecCCCceEEEEEe
Q psy4613          81 IAKNSLGEVESSIRL   95 (96)
Q Consensus        81 ~~~~~~g~~~~~~~l   95 (96)
                      .+.|..|.....+.|
T Consensus        76 ~a~N~~G~~~~~~~l   90 (93)
T d1wiua_          76 KVKNELGEDEAIFEV   90 (93)
T ss_dssp             EEEETTEEEEEEEEE
T ss_pred             EEEECCCEEEEEEEE
Confidence            999999988877765

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.81  E-value=3.6e-19  Score=79.36  Aligned_cols=85  Identities=29%  Similarity=0.438  Sum_probs=69.5

Q ss_pred             CCeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEE
Q psy4613           1 HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKC   80 (96)
Q Consensus         1 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c   80 (96)
                      +|.+...+....+..|+.+.|.|.+.|.|.|.+.|++++..+. ...++...         ...|.|.++...|.|.|.|
T Consensus         1 kP~f~~~~~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~g~~i~-~~~~~~~~---------~~~L~i~~v~~~D~G~Y~C   70 (89)
T d1cs6a4           1 QPDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLA-SQNRIEVS---------GGELRFSKLVLEDSGMYQC   70 (89)
T ss_dssp             EEEEEECCCCEEEETTCCEEEECEEEEESCCEEEEEETTEECC-CCSSEEEE---------TTEEEESSCCGGGCEEEEE
T ss_pred             CCCeEEECCCEEECCCCcEEEEEEEEEEcCCEEEEEEeecccc-ccceeeee---------eeeEEEEeecccCCEEEEE
Confidence            3677777788889999999999999999999999999876553 34444432         2468999999999999999


Q ss_pred             EEecCCCceEEEEEe
Q psy4613          81 IAKNSLGEVESSIRL   95 (96)
Q Consensus        81 ~~~~~~g~~~~~~~l   95 (96)
                      .+.|..|.......|
T Consensus        71 ~a~N~~G~~~~~~~l   85 (89)
T d1cs6a4          71 VAENKHGTVYASAEL   85 (89)
T ss_dssp             EEEETTEEEEEEEEE
T ss_pred             EEEeCCCEEEEEEEE
Confidence            999999987776655

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.80  E-value=1.9e-18  Score=78.22  Aligned_cols=90  Identities=22%  Similarity=0.145  Sum_probs=70.7

Q ss_pred             CCeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEE
Q psy4613           1 HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKC   80 (96)
Q Consensus         1 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c   80 (96)
                      +|.+..+.....+..|+.+.|.|.+.+.|.|.+.|++++..+. ...+....... .   ....|.|.++...|.|.|.|
T Consensus         4 aP~f~~~~~~~~v~~g~~v~l~c~v~g~P~p~v~W~k~~~~i~-~~~~~~~~~~~-~---~~~~L~I~~~~~~D~G~Y~c   78 (98)
T d1g1ca_           4 APKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIE-RSDRIYWYWPE-D---NVCELVIRDVTGEDSASIMV   78 (98)
T ss_dssp             EEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECC-CCSSEEEEEEE-T---TEEEEEECSCCGGGCEEEEE
T ss_pred             CCeEecCCCcEEEcCCCcEEEEEEEEEecCCeEEEEeCceEEe-eeeeeEEEecc-c---eEEEEEeccCccccCEEEEE
Confidence            4777777788889999999999999999999999999876554 33343322211 1   23579999999999999999


Q ss_pred             EEecCCCceEEEEEe
Q psy4613          81 IAKNSLGEVESSIRL   95 (96)
Q Consensus        81 ~~~~~~g~~~~~~~l   95 (96)
                      .+.|..|...+...|
T Consensus        79 ~a~N~~G~~~~~~~L   93 (98)
T d1g1ca_          79 KAINIAGETSSHAFL   93 (98)
T ss_dssp             EEEETTEEEEEEEEE
T ss_pred             EEEECCcEEEEEEEE
Confidence            999999988777655

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

Probab=99.80  E-value=3.6e-18  Score=77.82  Aligned_cols=90  Identities=24%  Similarity=0.412  Sum_probs=71.3

Q ss_pred             CCeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEE
Q psy4613           1 HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKC   80 (96)
Q Consensus         1 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c   80 (96)
                      +|.+...+..+.+..|+.+.|.|.+.+.|.|.+.|++++..+. ...++.......    ....|.|.++...|.|.|.|
T Consensus         8 ~P~f~~~~~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~~~~i~-~~~~~~~~~~~~----~~~~L~I~~~~~~D~G~Y~C   82 (102)
T d1fhga_           8 KPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVK-ESRHFQIDYDEE----GNCSLTISEVCGDDDAKYTC   82 (102)
T ss_dssp             EEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECC-CSSSEEEEECTT----CEEEEEESSCCGGGCEEEEE
T ss_pred             CCeEEcCCCcEEEecCCcEEEEEEEEeccCCeEEEEeeecccc-ceeeEeEEEecC----ceeeeEecCCCHHhCEEEEE
Confidence            3566667777888999999999999999999999999876654 344544432111    24679999999999999999


Q ss_pred             EEecCCCceEEEEEe
Q psy4613          81 IAKNSLGEVESSIRL   95 (96)
Q Consensus        81 ~~~~~~g~~~~~~~l   95 (96)
                      .+.|..|....++.|
T Consensus        83 ~a~N~~G~~~~~~~L   97 (102)
T d1fhga_          83 KAVNSLGEATCTAEL   97 (102)
T ss_dssp             EEEETTEEEEEEEEE
T ss_pred             EEEECCcEEEEEEEE
Confidence            999999988877765

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=8e-18  Score=76.53  Aligned_cols=88  Identities=22%  Similarity=0.238  Sum_probs=69.4

Q ss_pred             CeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEE
Q psy4613           2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCI   81 (96)
Q Consensus         2 p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~   81 (96)
                      |.+...+....+..|+.+.|.|.+.+.|.+.+.|++++..+. ...++.+....     ....|.|.++...|.|.|.|.
T Consensus         1 P~~~~~p~~~~v~~G~~~~l~C~v~g~p~p~v~W~k~~~~l~-~~~~~~~~~~~-----~~~~L~I~~~~~~D~G~Y~C~   74 (101)
T d2cqva1           1 PQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQ-ESEHMKVENSE-----NGSKLTILAARQEHCGCYTLL   74 (101)
T ss_dssp             CEESCCCCSEEEETTCCEEEEEEEESSSSCEEEEEESSSBCC-CSSSEEEEECS-----SEEEEEETTCCTTTCEEEEEE
T ss_pred             CeEEeeCCcEEEeCCCcEEEEEEEEecCCCEEEEEeCceeec-cCCcEEEEEec-----ceeEEEEeeCCcccCEEEEEE
Confidence            455556677788999999999999999999999999876653 34555543322     246799999999999999999


Q ss_pred             EecCCCceEEEEEe
Q psy4613          82 AKNSLGEVESSIRL   95 (96)
Q Consensus        82 ~~~~~g~~~~~~~l   95 (96)
                      +.|..|.....+.|
T Consensus        75 a~N~~G~~~~~~~l   88 (101)
T d2cqva1          75 VENKLGSRQAQVNL   88 (101)
T ss_dssp             EECSSCEEECCEEE
T ss_pred             EEECCCEEEEEEEE
Confidence            99999987766554

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.78  E-value=1.1e-18  Score=78.94  Aligned_cols=89  Identities=25%  Similarity=0.284  Sum_probs=69.9

Q ss_pred             CCeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEE
Q psy4613           1 HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKC   80 (96)
Q Consensus         1 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c   80 (96)
                      .|.+...+....+..|+.+.|.|.+.+.|.|.+.|++++..+. ...++.....   .  ....|.|.++...|.|.|.|
T Consensus         1 ~P~f~~~p~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~~~~l~-~~~~~~~~~~---~--~~~~L~I~~~~~~D~G~Y~C   74 (97)
T d1koaa1           1 QPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELK-QSVKYMKRYN---G--NDYGLTINRVKGDDKGEYTV   74 (97)
T ss_dssp             SCEEEECCCCCEEETTSCEEEEEEEECSSCCEEEEEETTEECC-SBTTBBCCCS---T--TEEEEEESCCCSGGGSCEEE
T ss_pred             CCEEEEeCCCEEEeCCCcEEEEEEEEEcCCCEEEEEEeeeccc-eeeEEEEEec---C--CeeEEEeCCCceecCEEEEE
Confidence            4778888888889999999999999999999999999876553 3333322211   1  24679999999999999999


Q ss_pred             EEecCCCceEEEEEe
Q psy4613          81 IAKNSLGEVESSIRL   95 (96)
Q Consensus        81 ~~~~~~g~~~~~~~l   95 (96)
                      .+.|..|.....+.|
T Consensus        75 ~a~N~~G~~~~~~~l   89 (97)
T d1koaa1          75 RAKNSYGTKEEIVFL   89 (97)
T ss_dssp             EEEETTEEEEEEECC
T ss_pred             EEEECCCEEEEEEEE
Confidence            999999987666543

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.77  E-value=7.2e-18  Score=75.08  Aligned_cols=84  Identities=25%  Similarity=0.372  Sum_probs=66.3

Q ss_pred             CCeEEec-CceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEE
Q psy4613           1 HPVIHVP-NQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYK   79 (96)
Q Consensus         1 ~p~~~~~-~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~   79 (96)
                      +|.+... ...+.+..|+.+.|.|.+.+.|.|.+.|++++..+  ...++....         ..|.|.++...|.|.|.
T Consensus         2 aP~f~~~p~~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~~~~i--~~~~~~~~~---------~~L~i~~v~~~d~G~Y~   70 (89)
T d1biha4           2 APKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPL--SGGRATVTD---------SGLVIKGVKNGDKGYYG   70 (89)
T ss_dssp             EEEEEECCCSEEEECTTSCEEEECEEEEESCCCCEEEETTEEC--CSSSEEEET---------TEEEESSCCSTTCEEEE
T ss_pred             CCeEEECCCCCEEEeCCCeEEEEEEEEEeCCCEEEEEeCCccC--ccccEEEee---------eeEEECCCChhhCEEEE
Confidence            3666654 45567889999999999999999999999987655  234443322         45999999999999999


Q ss_pred             EEEecCCCceEEEEEe
Q psy4613          80 CIAKNSLGEVESSIRL   95 (96)
Q Consensus        80 c~~~~~~g~~~~~~~l   95 (96)
                      |.+.|..|.....+.|
T Consensus        71 C~a~N~~G~~~~~~~l   86 (89)
T d1biha4          71 CRATNEHGDKYFETLV   86 (89)
T ss_dssp             EEEEETTEEEEEEEEE
T ss_pred             EEEEECCCEEEEEEEE
Confidence            9999999987766654

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.75  E-value=5.9e-18  Score=75.63  Aligned_cols=83  Identities=27%  Similarity=0.321  Sum_probs=64.3

Q ss_pred             CCeEEec-CceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEE
Q psy4613           1 HPVIHVP-NQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYK   79 (96)
Q Consensus         1 ~p~~~~~-~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~   79 (96)
                      +|.+... +..+.+..|+.+.|.|.+.+.|.|.+.|++++......   ..  .       ....|.|.++...|.|.|.
T Consensus         4 ~P~i~~~~p~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~~~~~~~~---~~--~-------~~~~L~I~~v~~~D~G~Y~   71 (91)
T d1cs6a3           4 APSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSK---WL--S-------SEPLLHIQNVDFEDEGTYE   71 (91)
T ss_dssp             EEEEEECCCSEEEEETTCCEEEECEEEEESCCEEEEEECCSCCSCC---CS--B-------SSSEEEECSCCGGGCEEEE
T ss_pred             CCeEEeeCCCcEEEecCCcEEEEEEEEEccCCEEEEEecccccceE---ee--e-------eeeEEEeCCCCccCCEEEE
Confidence            3556543 57788899999999999999999999999875433211   00  0       1256899999999999999


Q ss_pred             EEEecCCCceEEEEEe
Q psy4613          80 CIAKNSLGEVESSIRL   95 (96)
Q Consensus        80 c~~~~~~g~~~~~~~l   95 (96)
                      |.+.|..|.....+.|
T Consensus        72 C~a~N~~G~~~~~~~l   87 (91)
T d1cs6a3          72 CEAENIKGRDTYQGRI   87 (91)
T ss_dssp             EEEEETTEEEEEEEEE
T ss_pred             EEEEECCCEEEEEEEE
Confidence            9999999987776654

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.74  E-value=5.3e-18  Score=75.78  Aligned_cols=84  Identities=20%  Similarity=0.362  Sum_probs=66.2

Q ss_pred             ecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecC
Q psy4613           6 VPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNS   85 (96)
Q Consensus         6 ~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~   85 (96)
                      ..+..+.+..|+.+.|.|.+.+.|.|.+.|++++..+. ...+.......     ....|.|.++...|.|.|.|.+.|.
T Consensus         4 ~~P~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~g~~l~-~~~~~~~~~~~-----~~~~L~i~~v~~~D~G~Y~C~a~N~   77 (91)
T d1tnna_           4 TKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLS-TSARHQVTTTK-----YKSTFEISSVQASDEGNYSVVVENS   77 (91)
T ss_dssp             BCCCCEECSSSSCCCEEEECCCSSCCCCEEESSSSTTC-SSSSCEEEECS-----SEEEEECSSCCSCCCEEEEEECBCS
T ss_pred             eCCcCEEEeCCCcEEEEEEEEEEeCCeEEEEEeecccc-cccceeeeeec-----ceeEEeecCCCHHHCEEEEEEEEEC
Confidence            35567889999999999999999999999999875553 33343333221     3467999999999999999999999


Q ss_pred             CCceEEEEEe
Q psy4613          86 LGEVESSIRL   95 (96)
Q Consensus        86 ~g~~~~~~~l   95 (96)
                      .|.....+.|
T Consensus        78 ~G~~~~~~~l   87 (91)
T d1tnna_          78 EGKQEAEFTL   87 (91)
T ss_dssp             SCBCCEEEEE
T ss_pred             CCEEEEEEEE
Confidence            9987766654

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.74  E-value=2e-17  Score=75.01  Aligned_cols=89  Identities=28%  Similarity=0.507  Sum_probs=64.7

Q ss_pred             CCeEEecCce--eeecCCCcEEEEEEeeecccceeEEeeccceeEecc--cceEEEEeccccceEEEEEEEccCCCCCCe
Q psy4613           1 HPVIHVPNQL--VGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISS--ERYEVESISRSIFDFKMRLTIKKITKYDLG   76 (96)
Q Consensus         1 ~p~~~~~~~~--~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g   76 (96)
                      ||.+...+..  ..+..|+.+.|.|.+.+.|.|.+.|++++..+....  .......   .   ....|.|.+++..|.|
T Consensus         3 PP~i~~~~~~~~~t~~~G~~v~l~C~~~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~---~---~~~~L~I~~v~~~D~G   76 (100)
T d1qz1a3           3 PPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFS---D---DSSELTIRNVDKNDEA   76 (100)
T ss_dssp             EEEEEESCSEEEEETTSCCCEEEEEEEEEESCCEEEEEETTEECCCC--CCSSEEEC---T---TSCEEEECSCCGGGCE
T ss_pred             CCEEEeCCCceeEEEcCCCCEEEEEEEEEecCCEEEEEeCCcccccccccceeEEee---c---CceEEEeCCCCcccCE
Confidence            4666654433  456789999999999999999999999876553211  1111111   0   2357999999999999


Q ss_pred             eEEEEEecCCCceEEEEEe
Q psy4613          77 SYKCIAKNSLGEVESSIRL   95 (96)
Q Consensus        77 ~y~c~~~~~~g~~~~~~~l   95 (96)
                      .|.|.+.|..|.....+.|
T Consensus        77 ~Y~C~a~N~~G~~~~~~~l   95 (100)
T d1qz1a3          77 EYVCIAENKAGEQDASIHL   95 (100)
T ss_dssp             EEEEEEEETTEEEEEEEEE
T ss_pred             EEEEEEEECCCEEEEEEEE
Confidence            9999999999988777655

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

Probab=99.73  E-value=6.5e-18  Score=76.31  Aligned_cols=81  Identities=17%  Similarity=0.384  Sum_probs=61.1

Q ss_pred             eeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCce
Q psy4613          10 LVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEV   89 (96)
Q Consensus        10 ~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~   89 (96)
                      .+.+..|+.+.|.|.+.|.|.|.+.|++++..+.............     ....|.|.++...|.|.|.|.+.|..|..
T Consensus        14 ~~~v~~G~~v~l~C~~~g~P~p~i~W~kng~~l~~~~~~~~~~~~~-----~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~   88 (97)
T d3dara1          14 LHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRN-----QHWSLIMESVVPSDKGNYTCVVENEYGSI   88 (97)
T ss_dssp             EEEECTTCCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEEG-----GGTEEEECSCCGGGCEEEEEEEEETTEEE
T ss_pred             cEEECCCCcEEEEEEEeEECCCEEEEEECCEeccccCceeeEEEcC-----CcEEEEECCCCcccCEEEEEEEEECCCEE
Confidence            3567889999999999999999999999876654221111111100     12579999999999999999999999987


Q ss_pred             EEEEEe
Q psy4613          90 ESSIRL   95 (96)
Q Consensus        90 ~~~~~l   95 (96)
                      ...+.|
T Consensus        89 ~~~~~l   94 (97)
T d3dara1          89 NHTYHL   94 (97)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            777655

>d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=3.4e-17  Score=72.97  Aligned_cols=80  Identities=20%  Similarity=0.271  Sum_probs=62.1

Q ss_pred             cCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCC
Q psy4613           7 PNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSL   86 (96)
Q Consensus         7 ~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~   86 (96)
                      |...+.+..|+.+.|.|.+.+.|.|.+.|++.+.....  .......       ....|.|.++...|.|.|.|.+.|..
T Consensus         7 P~~~~~~~~G~~v~l~C~~~g~p~p~i~W~~~~~~~~~--~~~~~~~-------~~~~L~I~~v~~~d~G~Y~C~a~N~~   77 (90)
T d1vcaa2           7 PESRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLN--GKVTNEG-------TTSTLTMNPVSFGNEHSYLCTATCES   77 (90)
T ss_dssp             SSSEEEEETTSCEEEEEEEESCSSCEEEEEETTCCCCS--SEEEEET-------TEEEEEESSCCGGGCSEEEEEEEETT
T ss_pred             CCCcEEEECCCEEEEEEeccCCCCceEEEEecCcccee--eeeeeec-------CCcEEEEecccccccceEEEEEEeCC
Confidence            44556678999999999999999999999987654421  1111111       34689999999999999999999999


Q ss_pred             CceEEEEEe
Q psy4613          87 GEVESSIRL   95 (96)
Q Consensus        87 g~~~~~~~l   95 (96)
                      |.....+.|
T Consensus        78 g~~~~~~~v   86 (90)
T d1vcaa2          78 RKLEKGIQV   86 (90)
T ss_dssp             EEEEEEEEE
T ss_pred             CEEEEEEEE
Confidence            987776654

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=5.1e-16  Score=71.08  Aligned_cols=95  Identities=21%  Similarity=0.312  Sum_probs=68.1

Q ss_pred             CCeEEecC-ceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEE---Eecc---ccceEEEEEEEccCCCC
Q psy4613           1 HPVIHVPN-QLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVE---SISR---SIFDFKMRLTIKKITKY   73 (96)
Q Consensus         1 ~p~~~~~~-~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~---~~~~---~~~~~~~~l~i~~~~~~   73 (96)
                      +|.+..+. ..+.+..|+.+.|.|.+.+.|.|.+.|.+++..+..........   ....   ......+.|.|.+++..
T Consensus         1 kP~i~~p~~~~i~v~~G~~v~l~C~v~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~   80 (107)
T d1iray3           1 RPVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESR   80 (107)
T ss_dssp             CCEEEECCSEEEECCTTCCEEEEEEEEECTTCEEEEEETTEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCGG
T ss_pred             CCCEEEECCCEEEEeCCCEEEEEEEeccCCCCeEEEEECCcccccccceeeeeeeeeccceeeecccceEEEEEeecchH
Confidence            47776655 44668889999999999999999999998765443211111110   0000   11124578999999999


Q ss_pred             CCe-eEEEEEecCCCceEEEEEe
Q psy4613          74 DLG-SYKCIAKNSLGEVESSIRL   95 (96)
Q Consensus        74 d~g-~y~c~~~~~~g~~~~~~~l   95 (96)
                      |.| .|.|.+.|..|.....+.|
T Consensus        81 D~g~~Y~C~A~N~~G~~~~~i~L  103 (107)
T d1iray3          81 FYKHPFTCFAKNTHGIDAAYIQL  103 (107)
T ss_dssp             GGSSCEEEEEECSSCEEEEEEEE
T ss_pred             HCCcEEEEEEEeCCCeEEEEEEE
Confidence            999 5999999999998888766

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

Probab=99.73  E-value=1.8e-16  Score=72.77  Aligned_cols=95  Identities=21%  Similarity=0.264  Sum_probs=65.5

Q ss_pred             CCeEEec-CceeeecCCCcEEEEEEeeecccceeEEeeccceeEe---cc--cceEEEEe--ccccceEEEEEEEccCCC
Q psy4613           1 HPVIHVP-NQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVI---SS--ERYEVESI--SRSIFDFKMRLTIKKITK   72 (96)
Q Consensus         1 ~p~~~~~-~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~---~~--~~~~~~~~--~~~~~~~~~~l~i~~~~~   72 (96)
                      +|.+... +....+..|+.+.|.|.+.+.|.|.+.|++.+.....   ..  ........  ..........|.|.++..
T Consensus         4 ~P~i~~~~P~~~tv~~G~~v~l~C~v~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~   83 (109)
T d2fdbp2           4 RPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTF   83 (109)
T ss_dssp             CCEECTTCSCCEEECTTCCEEEEEEEECSSCCEEEEEEEC-------------CEEEECCEEEEETTEEEEEEEECSCCG
T ss_pred             CCEEcCCCCCCEEEecCCcEEEEEEEEEcCCCeEEEEecCccCCceeccCCceeEeecccceeEEecCCcEEEEECCCCH
Confidence            4677654 5778899999999999999999999999986432210   00  00010000  000111347799999999


Q ss_pred             CCCeeEEEEEecCCCceEEEEEe
Q psy4613          73 YDLGSYKCIAKNSLGEVESSIRL   95 (96)
Q Consensus        73 ~d~g~y~c~~~~~~g~~~~~~~l   95 (96)
                      .|.|.|.|.+.|..|.......|
T Consensus        84 ~D~G~Y~C~a~N~~G~~~~~~~L  106 (109)
T d2fdbp2          84 EDAGEYTCLAGNSIGISFHSAWL  106 (109)
T ss_dssp             GGCEEEEEEEECSSCEEEEEEEE
T ss_pred             HHCeEEEEEEEECCCEEEEEEEE
Confidence            99999999999999988877765

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=2.8e-16  Score=71.26  Aligned_cols=90  Identities=22%  Similarity=0.305  Sum_probs=67.6

Q ss_pred             CCeEEecCceeeecCCCcEEEEEEeeecccc-eeEEeeccceeE---e--cccceEEEEeccccceEEEEEEEccCC-CC
Q psy4613           1 HPVIHVPNQLVGAPIDTDVTLECYVEAYPKS-INYWVRDQGDMV---I--SSERYEVESISRSIFDFKMRLTIKKIT-KY   73 (96)
Q Consensus         1 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~-~~~w~~~~~~~~---~--~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~   73 (96)
                      ||.+...+....+..|+.+.|.|.+.+.|.+ .+.|++.+....   .  ...++......     ....|.|.++. ..
T Consensus         2 PP~i~~~~~~~~v~~G~~v~l~C~v~g~P~p~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~-----~~~~L~I~~v~~~~   76 (101)
T d3b5ha1           2 PPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQ-----GRSELHIENLNMEA   76 (101)
T ss_dssp             SCCCEESCSEEEECTTSCEEEEEECCCSSCCCEEEEEECCSSSCEECCTTGGGTEEEEEET-----TEEEEEECSCCTTT
T ss_pred             CceEEEcCCcEEECcCCeEEEEEEEEecCCeeEEEEEeccceeeeecccCCCceEEEEeCC-----CEEEEEEecccccc
Confidence            5778878888889999999999999998877 789998643221   1  12233332211     34689999997 57


Q ss_pred             CCeeEEEEEecCCCceEEEEEe
Q psy4613          74 DLGSYKCIAKNSLGEVESSIRL   95 (96)
Q Consensus        74 d~g~y~c~~~~~~g~~~~~~~l   95 (96)
                      |.|.|.|.+.|..|.....+.|
T Consensus        77 D~G~Y~C~A~N~~G~~~~~~~L   98 (101)
T d3b5ha1          77 DPGQYRCNGTSSKGSDQAIITL   98 (101)
T ss_dssp             SSEEEEEEEEETTEEEEEEEEE
T ss_pred             CCEEEEEEEEECCCEEEEEEEE
Confidence            9999999999999988877765

>d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=2.5e-16  Score=70.13  Aligned_cols=82  Identities=13%  Similarity=0.255  Sum_probs=62.4

Q ss_pred             eEEecCceeeecCCCcEEEEEEee-ecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEE
Q psy4613           3 VIHVPNQLVGAPIDTDVTLECYVE-AYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCI   81 (96)
Q Consensus         3 ~~~~~~~~~~~~~g~~~~l~c~~~-~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~   81 (96)
                      .+..++..+.+..|+++.|.|.+. +.|.+.+.|.+.+..+.    ......       ..+.|.|.+++..|+|.|.|.
T Consensus         5 ~i~~p~~~~~~~~G~~~~l~C~~~~g~p~p~v~W~~~~~~~~----~~~~~~-------~~~~L~i~~v~~~D~G~Y~C~   73 (90)
T d1gsma1           5 QVEPPEPVVAVALGASRQLTCRLACADRGASVQWRGLDTSLG----AVQSDT-------GRSVLTVRNASLSAAGTRVCV   73 (90)
T ss_dssp             EEESCCSEEEEETTCCEEEEEEECCSSTTCEEEEESSTTTTC----CEEEES-------SEEEEEECSCCGGGCEEEEEE
T ss_pred             EEeCCCCeEEEEeCCcEEEEEEecCCCCccEEEEEEeeeeee----eeeccC-------ceeeEEcCccChhhCCcEEEE
Confidence            344455667788999999999875 77889999988654431    111111       347899999999999999999


Q ss_pred             EecCCCceEEEEEe
Q psy4613          82 AKNSLGEVESSIRL   95 (96)
Q Consensus        82 ~~~~~g~~~~~~~l   95 (96)
                      +.|..|....++.|
T Consensus        74 Asn~~g~~~~s~~l   87 (90)
T d1gsma1          74 GSCGGRTFQHTVQL   87 (90)
T ss_dssp             EEETTEEEEEEEEE
T ss_pred             EEeCCCcEEEEEEE
Confidence            99999987777655

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=7.6e-16  Score=70.83  Aligned_cols=93  Identities=14%  Similarity=0.164  Sum_probs=66.8

Q ss_pred             eEEecCceeeecCCCcEEEEEEeeecc---cceeEEeeccceeEec--ccceEEEE-eccccceEEEEEEEccCCCCCCe
Q psy4613           3 VIHVPNQLVGAPIDTDVTLECYVEAYP---KSINYWVRDQGDMVIS--SERYEVES-ISRSIFDFKMRLTIKKITKYDLG   76 (96)
Q Consensus         3 ~~~~~~~~~~~~~g~~~~l~c~~~~~~---~~~~~w~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~l~i~~~~~~d~g   76 (96)
                      .+...+..+.+..|+++.|.|.+.+.|   .|.+.|++++......  ..+..... ...........|.|.+++..|.|
T Consensus         6 ~Fv~~P~~~~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G   85 (110)
T d2avga1           6 LFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPAFTG   85 (110)
T ss_dssp             SEEECCCCEEEETTSEEEEEEEEECCSCSSSCEEEEECSTTCCSTTTCSSSEEEEEEEETTTTEEEEEEEEESCCTTCCE
T ss_pred             EeEECCCeEEEECCCCEEEEEeecCCCCCCCCEEEEEeCceeeecccCCceeEeeeeeEEecccCEEEEEEeccCHHHCc
Confidence            345566778899999999999999887   5789999875432211  12222221 11122224578999999999999


Q ss_pred             eEEEEEecCCCceEEEEEe
Q psy4613          77 SYKCIAKNSLGEVESSIRL   95 (96)
Q Consensus        77 ~y~c~~~~~~g~~~~~~~l   95 (96)
                      .|.|.+.|..|...+.+.|
T Consensus        86 ~Y~C~a~N~~G~~~~~~~L  104 (110)
T d2avga1          86 GYRCEVSTKDKFDCSNFNL  104 (110)
T ss_dssp             EEEEEEEETTEEEEEEEEE
T ss_pred             EEEEEEEECCCeEEEEEEE
Confidence            9999999999998888766

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=1.5e-17  Score=74.46  Aligned_cols=87  Identities=21%  Similarity=0.251  Sum_probs=67.5

Q ss_pred             CCeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCe-eEE
Q psy4613           1 HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLG-SYK   79 (96)
Q Consensus         1 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g-~y~   79 (96)
                      .|.+...+....+..|+.+.|.|.+.+.|.|.+.|++++..+.......        .......|.|.++...|.| .|.
T Consensus         2 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~--------~~~~~~~L~i~~~~~~d~G~~Y~   73 (92)
T d2ifga1           2 VPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKS--------GGLPSLGLTLANVTSDLNRKNVT   73 (92)
T ss_dssp             CCEEEEECCSSCCBTTCCEEEEEEEECSSCCCCCEEESCCCSSEEECCC--------CCSSEEEEEEESCCSTTTTCCEE
T ss_pred             CCEEEEeCCCEEEeCCCEEEEeeeccCCCCcEEEEEECCceeeeeeeee--------eeccceeEEEccccccccceEEE
Confidence            3777777777889999999999999999999999999865543211110        0113467999999999998 799


Q ss_pred             EEEecCCCceEEEEEe
Q psy4613          80 CIAKNSLGEVESSIRL   95 (96)
Q Consensus        80 c~~~~~~g~~~~~~~l   95 (96)
                      |.+.|..|....++.|
T Consensus        74 C~a~N~~G~~~~s~~l   89 (92)
T d2ifga1          74 CWAENDVGRAEVSVQV   89 (92)
T ss_dssp             ECCEETTEECCEEECC
T ss_pred             EEEEcCCCEEEEEEEE
Confidence            9999999988777654

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.69  E-value=5.4e-17  Score=72.59  Aligned_cols=84  Identities=15%  Similarity=0.192  Sum_probs=63.1

Q ss_pred             CeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEE
Q psy4613           2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCI   81 (96)
Q Consensus         2 p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~   81 (96)
                      +.+...+....+..|+.+.|.|.+.+.|.|.+.|++++..+...... .....      ....|.|.++...|.|.|.|.
T Consensus         2 ~~F~~~P~~~~v~~G~~~~l~C~v~g~p~p~v~W~~~~~~i~~~~~~-~~~~~------~~~~L~I~~~~~~D~G~Y~C~   74 (92)
T d1epfa2           2 LMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDV-RFIVL------SNNYLQIRGIKKTDEGTYRCE   74 (92)
T ss_dssp             SEEEECCSSEECCTTSCEEECCEEECSSCCEEEEEETTEEGGGGCCT-TEEEC------TTSCEEETTCCGGGCEEEEEE
T ss_pred             cEEEEcCCCEEEeCCCcEEEEEEEeecCCCeEEEEEcCcccccccce-eeeee------eeeeEEECCCCHHhCEEEEEE
Confidence            56666778888999999999999999999999999987655422211 11111      113589999999999999999


Q ss_pred             EecCCCceEEE
Q psy4613          82 AKNSLGEVESS   92 (96)
Q Consensus        82 ~~~~~g~~~~~   92 (96)
                      +.|..+.....
T Consensus        75 a~n~~~~~~~~   85 (92)
T d1epfa2          75 GRILARGEINF   85 (92)
T ss_dssp             EEEGGGTEEEE
T ss_pred             EEECcCCEEEE
Confidence            99976654433

>d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.69  E-value=2.6e-15  Score=67.62  Aligned_cols=82  Identities=20%  Similarity=0.244  Sum_probs=61.0

Q ss_pred             EEecCceeeecCCCcEEEEEEeeeccc-ceeEEeeccceeE-ecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEE
Q psy4613           4 IHVPNQLVGAPIDTDVTLECYVEAYPK-SINYWVRDQGDMV-ISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCI   81 (96)
Q Consensus         4 ~~~~~~~~~~~~g~~~~l~c~~~~~~~-~~~~w~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~   81 (96)
                      +...+....+..|+.+.|.|.+.+.|. +.+.|++.+.... ....++.......    ....|.|.+++..|.|.|.|.
T Consensus         3 V~i~P~~~~v~~G~~~~l~C~v~g~p~~~~v~W~~~~g~~~~~~~~~~~~~~~~~----~~~~L~I~~~~~~D~G~Y~C~   78 (97)
T d1epfa1           3 VDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDD----DSSTLTIYNANIDDAGIYKCV   78 (97)
T ss_dssp             EEEESSSEEEETTCCEEEEEEECCCSCCCEEEEECTTSCEECCBSSSEEEEEEET----TEEEEEECSCCGGGCEEEEEE
T ss_pred             EEEECCCEEEccCCcEEEEEEEEeccCCCEEEEEEeeeeeeeeccccEEEEeecC----cceEEEcccCchhhceEEEEE
Confidence            445566677899999999999998875 6899998654433 2344444332111    246799999999999999999


Q ss_pred             EecCCCce
Q psy4613          82 AKNSLGEV   89 (96)
Q Consensus        82 ~~~~~g~~   89 (96)
                      +.|..|..
T Consensus        79 a~N~~G~~   86 (97)
T d1epfa1          79 VTAEDGTQ   86 (97)
T ss_dssp             EEETTTEE
T ss_pred             EEeCCCcE
Confidence            99999864

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.69  E-value=1.5e-15  Score=67.37  Aligned_cols=78  Identities=23%  Similarity=0.341  Sum_probs=61.6

Q ss_pred             cCceeeecCCCcEEEEEEee-ecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecC
Q psy4613           7 PNQLVGAPIDTDVTLECYVE-AYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNS   85 (96)
Q Consensus         7 ~~~~~~~~~g~~~~l~c~~~-~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~   85 (96)
                      .+....+..|+.+.|.|.+. +.|.+.+.|++++.....  .+...         ....|.|.++...|.|.|.|.+.|.
T Consensus         8 ~p~~~~v~~G~~~~l~C~~~~~~p~~~v~W~k~~~~~~~--~~~~~---------~~~~L~i~~v~~~d~G~Y~C~a~N~   76 (89)
T d1gl4b_           8 EQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLP--SRAMD---------FNGILTIRNVQPSDAGTYVCTGSNM   76 (89)
T ss_dssp             SCCEEEECTTCCEEEEEEEEESSSCCEEEEEEGGGBCCC--TTEEE---------ETTEEEECSCCGGGCEEEEEEEECS
T ss_pred             CCCeEEEeCCCcEEEEEEccCCCCCCEEEEecCCceeec--cccEe---------eceEEEEecCCcccCEEEEEEEEEC
Confidence            45677889999999999997 567789999998665432  22221         1256999999999999999999999


Q ss_pred             CCceEEEEEe
Q psy4613          86 LGEVESSIRL   95 (96)
Q Consensus        86 ~g~~~~~~~l   95 (96)
                      .|.....+.|
T Consensus        77 ~G~~~~~~~l   86 (89)
T d1gl4b_          77 FAMDQGTATL   86 (89)
T ss_dssp             SCEEEEEEEE
T ss_pred             CCEEEEEEEE
Confidence            9988777765

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.68  E-value=2.9e-16  Score=71.35  Aligned_cols=94  Identities=15%  Similarity=0.246  Sum_probs=66.3

Q ss_pred             CCeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEec-ccceEEEEeccc-cceEEEEEEEccCCCCCCeeE
Q psy4613           1 HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVIS-SERYEVESISRS-IFDFKMRLTIKKITKYDLGSY   78 (96)
Q Consensus         1 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~l~i~~~~~~d~g~y   78 (96)
                      +|.+..+...+.+..|+.+.|.|.+.+.|.|.+.|++.+...... ............ ......+|.|.++...|.|.|
T Consensus         1 k~sV~t~~~~v~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tL~I~~v~~~D~G~Y   80 (102)
T d1f97a1           1 KGSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSSVTRKDNGEY   80 (102)
T ss_dssp             CCEEECSCSEEEEETTCCEEEECEEESCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEEETTEEEESCCCGGGCEEE
T ss_pred             CCCEEccCCcEEEeCCCEEEEEEEcCCCCCCeEEEEeccccceeeeccccccccceeeEEEecCCEEEEeECCccCCEEE
Confidence            477888888899999999999999999999999999865433210 000000000000 000234699999999999999


Q ss_pred             EEEEecCCCceEEEEE
Q psy4613          79 KCIAKNSLGEVESSIR   94 (96)
Q Consensus        79 ~c~~~~~~g~~~~~~~   94 (96)
                      .|.+.|..|.....+.
T Consensus        81 ~C~a~n~~g~~~~~~~   96 (102)
T d1f97a1          81 TCMVSEEGGQNYGEVS   96 (102)
T ss_dssp             EEEEEETTSSSEEEEE
T ss_pred             EEEEEECCCCEEEEEE
Confidence            9999999988665543

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.67  E-value=6.4e-17  Score=72.58  Aligned_cols=82  Identities=20%  Similarity=0.276  Sum_probs=63.4

Q ss_pred             CCeEEecCceeeecCCCcEEEEEEeeecccc-eeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEE
Q psy4613           1 HPVIHVPNQLVGAPIDTDVTLECYVEAYPKS-INYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYK   79 (96)
Q Consensus         1 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~   79 (96)
                      .|.+...+..+.+..|+.+.|.|.+.+.|.| .+.|++++..+...........       ....|.|.++...|.|.|.
T Consensus         2 ~P~i~~~p~~~~v~~g~~~~l~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~-------~~~~L~i~~v~~~D~G~Y~   74 (94)
T d1biha1           2 YPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRK-------DEGSLVFLRPQASDEGHYQ   74 (94)
T ss_dssp             CCEECCCCSEEEEETTSCEEECCCEESCCSSCEEEEEESSSBCCTTTTTEEECT-------TSCCEEESSCCGGGCEEEE
T ss_pred             CCEEEecCCcEEEeCCCeEEEEEEecCCCCeeEEEEEeeeeeeeeecceeeecc-------cceEEEEeccChhcCeEEE
Confidence            3777777888889999999999999998876 6899998766532222222211       1246899999999999999


Q ss_pred             EEEecCCCce
Q psy4613          80 CIAKNSLGEV   89 (96)
Q Consensus        80 c~~~~~~g~~   89 (96)
                      |.+.|..|..
T Consensus        75 C~a~N~~G~~   84 (94)
T d1biha1          75 CFAETPAGVA   84 (94)
T ss_dssp             EEEEETTEEE
T ss_pred             EEEEeCCCEE
Confidence            9999999864

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=1.2e-15  Score=67.99  Aligned_cols=78  Identities=18%  Similarity=0.270  Sum_probs=59.1

Q ss_pred             CceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCC
Q psy4613           8 NQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLG   87 (96)
Q Consensus         8 ~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g   87 (96)
                      |..+.+..|+.+.|.|.+.+.|.|.+.|++++..+. ...+.......   ......|.|.++...|.|.|.|.+.|..|
T Consensus         3 P~~~~v~~G~~~~l~C~v~g~p~p~v~W~k~g~~l~-~~~~~~~~~~~---~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G   78 (91)
T d1rhfa1           3 PVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQ-NLDQLYIPVSE---QHWIGFLSLKSVERSDAGRYWCQVEDGGE   78 (91)
T ss_dssp             CEEEEEETTCCEEEEEEEESCSSCCEEEEETTEECC-SSEEEEEEEET---TEEEEEEEESSCCGGGCEEEEEEESSCTT
T ss_pred             CeeEEEcCCCeEEEEEEEEecCCceEEEEEeecccc-cceeeeeeecc---cCceeeEEECCCCcccCEEEEEEEEECCC
Confidence            456778999999999999999999999999876543 22222222111   11346789999999999999999999988


Q ss_pred             ce
Q psy4613          88 EV   89 (96)
Q Consensus        88 ~~   89 (96)
                      ..
T Consensus        79 ~~   80 (91)
T d1rhfa1          79 TE   80 (91)
T ss_dssp             CE
T ss_pred             CE
Confidence            64

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.66  E-value=1.4e-15  Score=68.55  Aligned_cols=80  Identities=18%  Similarity=0.241  Sum_probs=59.8

Q ss_pred             cCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCC
Q psy4613           7 PNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSL   86 (96)
Q Consensus         7 ~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~   86 (96)
                      .+..+.+..|+.+.|.|.+.+.|.+.+.|++++..+... ...........   ....|.|.++...|.|.|.|.+.|..
T Consensus         9 ~~~~~~~~~G~~v~l~C~~~g~P~~~v~W~k~g~~i~~~-~~~~~~~~~~~---~~~~L~I~~~~~~D~G~Y~C~a~N~~   84 (97)
T d1biha3           9 VSKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGN-PEDRITRHNRT---SGKRLLFKTTLPEDEGVYTCEVDNGV   84 (97)
T ss_dssp             ECCSEEEETTSCEEEEEEEECSSCCCCEEEETTEECCCC-TTSSEESCSSS---TTSEEEESSCCGGGCEEEEEEECCSS
T ss_pred             CCCCEEEecCCeEEEEEEEEEecCCEEEEEEeeeecccc-ceeeeeeeeec---CCCEEEEEeccccccEEEEEEEEECC
Confidence            345677899999999999999999999999987665422 22222111111   12469999999999999999999999


Q ss_pred             CceE
Q psy4613          87 GEVE   90 (96)
Q Consensus        87 g~~~   90 (96)
                      |...
T Consensus        85 G~~~   88 (97)
T d1biha3          85 GKPQ   88 (97)
T ss_dssp             SSCE
T ss_pred             CcEE
Confidence            9754

>d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD4 C2-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=1.1e-15  Score=67.18  Aligned_cols=69  Identities=14%  Similarity=0.134  Sum_probs=57.5

Q ss_pred             eeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCceE
Q psy4613          11 VGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVE   90 (96)
Q Consensus        11 ~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~~   90 (96)
                      ..+..|+.+.|.|.+.+.|.|.+.|++++.....                ....+.|.++...|+|.|.|.+.|..|...
T Consensus         9 ~~v~~G~~~~L~C~~~g~p~P~i~W~~~~~~~~~----------------~~~~l~i~~v~~~DsG~Y~C~a~N~~g~~~   72 (84)
T d2nxyb2           9 THLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQ----------------GGKTLSVSQLELQDSGTWTCTVLQNQKKVE   72 (84)
T ss_dssp             SCEETTCCEEEEEECCTTCCCEEEEECTTCCEEE----------------ESSEEEESSCCGGGCEEEEEEEEETTEEEE
T ss_pred             eEEECCCeEEEEEEeEcCCchheEEEeeccccee----------------eeeeeeeeecccccccEEEEEEEeCCCEEE
Confidence            4578999999999999999999999987644321                124578999999999999999999999887


Q ss_pred             EEEEe
Q psy4613          91 SSIRL   95 (96)
Q Consensus        91 ~~~~l   95 (96)
                      ..+.|
T Consensus        73 ~~~~v   77 (84)
T d2nxyb2          73 FKIDI   77 (84)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            77654

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=1.5e-15  Score=69.15  Aligned_cols=83  Identities=18%  Similarity=0.203  Sum_probs=59.4

Q ss_pred             cCceeeecCCCcEEEEEEeeecc-cceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecC
Q psy4613           7 PNQLVGAPIDTDVTLECYVEAYP-KSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNS   85 (96)
Q Consensus         7 ~~~~~~~~~g~~~~l~c~~~~~~-~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~   85 (96)
                      .+....+..|+.+.|.|.+.+.| .|.+.|++++..+............... ......|.|.++...|.|.|.|.+.|.
T Consensus         9 ~~~~~~v~~G~~v~L~C~v~g~p~~P~v~W~k~~~~~~~~~~~~~~~~~~~~-~~~~~~L~I~~v~~~D~G~Y~C~A~N~   87 (104)
T d2aw2a1           9 RQSEHSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEK-NISFFILHFEPVLPNDNGSYRCSANFQ   87 (104)
T ss_dssp             TTEEEEEETTSCEEEEEEEECSSSCCEEEEEEECSSCEEECCSSCEEEEECS-SCEEEEEEESSCCGGGCEEEEEEEEET
T ss_pred             cCCeEEEeCCCeEEEEEEEEeeCCCCEEEEEecCcccccccceeeeeEEecC-CceEEEEEEccccHHHCCeEEEEEEcC
Confidence            44566789999999999999988 4899999987655432222111111111 113457999999999999999999999


Q ss_pred             CCceE
Q psy4613          86 LGEVE   90 (96)
Q Consensus        86 ~g~~~   90 (96)
                      .|...
T Consensus        88 ~G~~~   92 (104)
T d2aw2a1          88 SNLIE   92 (104)
T ss_dssp             TEEEE
T ss_pred             CCeEE
Confidence            88643

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=1.3e-15  Score=67.08  Aligned_cols=73  Identities=16%  Similarity=0.236  Sum_probs=56.3

Q ss_pred             CeEEecCceeeecCCCcEEEEEEeeecccc-eeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEE
Q psy4613           2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKS-INYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKC   80 (96)
Q Consensus         2 p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c   80 (96)
                      |.+...+....+..|+.+.|.|.+.|.|.| .+.|++++..+....               ...+.|......|.|.|.|
T Consensus         2 P~f~~~P~~~~v~~G~~~~l~C~~~g~P~P~~i~W~k~g~~i~~~~---------------~~~~~l~~~~~~d~G~Y~C   66 (85)
T d1rhfa2           2 PFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPA---------------PSPSVLNVTGVTQSTMFSC   66 (85)
T ss_dssp             CEEEECCCCEEECTTCCEEEEEEEECSSSCCEEEEEETTEECSCSE---------------ESSEEEEECCCSSCEEEEE
T ss_pred             CcEEEeCCcEEEcCCCEEEEEEEEecCCcceEEEEEECCEECCCCC---------------CcceEEecCCccccEEEEE
Confidence            677777888889999999999999999988 899999875542110               1123444555679999999


Q ss_pred             EEecCCCce
Q psy4613          81 IAKNSLGEV   89 (96)
Q Consensus        81 ~~~~~~g~~   89 (96)
                      .+.|..|..
T Consensus        67 ~A~N~~G~~   75 (85)
T d1rhfa2          67 EAHNLKGLA   75 (85)
T ss_dssp             EEEETTEEE
T ss_pred             EEEcCCCcE
Confidence            999999854

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=1.5e-14  Score=65.78  Aligned_cols=82  Identities=21%  Similarity=0.234  Sum_probs=61.1

Q ss_pred             cCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCceEEEE
Q psy4613          14 PIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVESSI   93 (96)
Q Consensus        14 ~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~~~~~   93 (96)
                      ..+....+.|.+.|.|.|.+.|++++..+. ...+................|.|.+++..|.|.|.|.+.|..|.....+
T Consensus        14 ~~~~~~~i~~~v~G~P~P~i~W~~~g~~l~-~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~   92 (103)
T d1wwbx_          14 TSDHHWCIPFTVKGNPKPALQWFYNGAILN-ESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQI   92 (103)
T ss_dssp             CCCCEEEEEEEEECSSCCEEEEEETTEEEC-CCSSEEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEECSSCEEEEEE
T ss_pred             ccceeEEEEEEEEEeCCCEEEEEECCEEee-eeeeeeeeecccccccceEEEEECCCCHHhCceEEEEEeccCCEEEEEE
Confidence            356667889999999999999999876653 3333333322211212356799999999999999999999999998887


Q ss_pred             EeC
Q psy4613          94 RLY   96 (96)
Q Consensus        94 ~l~   96 (96)
                      .|.
T Consensus        93 ~v~   95 (103)
T d1wwbx_          93 SAH   95 (103)
T ss_dssp             EEC
T ss_pred             EEE
Confidence            763

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.65  E-value=1.7e-16  Score=71.53  Aligned_cols=83  Identities=23%  Similarity=0.328  Sum_probs=59.9

Q ss_pred             CCeEEecCceeeecCC---CcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCee
Q psy4613           1 HPVIHVPNQLVGAPID---TDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGS   77 (96)
Q Consensus         1 ~p~~~~~~~~~~~~~g---~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~   77 (96)
                      +|.+...+....+..|   +.+.|.|.+.+.|.|.+.|++++..+...........       ....+.+..+...|.|.
T Consensus         4 ~P~f~~~P~~~~~~~g~~~~~v~l~C~~~g~P~p~v~W~~ng~~i~~~~~~~~~~~-------~~~~l~i~~~~~~d~G~   76 (97)
T d1cs6a1           4 GPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLV-------AGDLVISNPVKAKDAGS   76 (97)
T ss_dssp             EEEEEECCCCEEEETTCSCCEEEECCEEEEESCCEEEEEETTEECCCSTTSSEEEE-------TTEEEEESCCHHHHCEE
T ss_pred             CCEEEEeCCCEEEECccCCCeEEEEEEEEEeCCCEEEEEEeeeeccCCCCceEEee-------eeeEEEEecccccCCEE
Confidence            3666666666656554   6899999999999999999998766543222211111       12457788888999999


Q ss_pred             EEEEEecCCCceE
Q psy4613          78 YKCIAKNSLGEVE   90 (96)
Q Consensus        78 y~c~~~~~~g~~~   90 (96)
                      |.|.+.|..|...
T Consensus        77 Y~C~a~N~~G~~~   89 (97)
T d1cs6a1          77 YQCVATNARGTVV   89 (97)
T ss_dssp             EEEEEEETTEEEE
T ss_pred             EEEEEEECCCEEE
Confidence            9999999999653

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=5.8e-15  Score=68.11  Aligned_cols=90  Identities=17%  Similarity=0.160  Sum_probs=63.5

Q ss_pred             ecCceeeecCCCcEEEEEEeeecc---cceeEEeeccceeEe--cccceEEEEec-cccceEEEEEEEccCCCCCCeeEE
Q psy4613           6 VPNQLVGAPIDTDVTLECYVEAYP---KSINYWVRDQGDMVI--SSERYEVESIS-RSIFDFKMRLTIKKITKYDLGSYK   79 (96)
Q Consensus         6 ~~~~~~~~~~g~~~~l~c~~~~~~---~~~~~w~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~l~i~~~~~~d~g~y~   79 (96)
                      ..+..+.+..|+.+.|.|.+.+.|   .|.+.|++++.....  ...+....... .........|.|.+++..|.|.|.
T Consensus         5 ~~P~~~~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~   84 (113)
T d2dava1           5 EKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFAGNYR   84 (113)
T ss_dssp             SCCCCCEEETTCCEEEEEEEECCCSSSCCEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTTSCEEEE
T ss_pred             ECCceEEEeCCCEEEEEEEEccCCCCCCCEEEEEEeeccccccccceeeeeccceeeEeecCEEEEEEccCCHHHCeEEE
Confidence            345667889999999999999887   578999987533221  12223222211 112223567999999999999999


Q ss_pred             EEEecCCCceEEEEEe
Q psy4613          80 CIAKNSLGEVESSIRL   95 (96)
Q Consensus        80 c~~~~~~g~~~~~~~l   95 (96)
                      |.+.|..|...+.+.|
T Consensus        85 C~a~N~~G~~~~~~~L  100 (113)
T d2dava1          85 CEVTYKDKFDSCSFDL  100 (113)
T ss_dssp             EEEECSSCEEEECCEE
T ss_pred             EEEEeCCCEEEEEEEE
Confidence            9999999987766554

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=4.9e-16  Score=69.52  Aligned_cols=79  Identities=18%  Similarity=0.226  Sum_probs=59.5

Q ss_pred             CCeEEecCceeeecCCCcEEEEEEeeeccc-ceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEE
Q psy4613           1 HPVIHVPNQLVGAPIDTDVTLECYVEAYPK-SINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYK   79 (96)
Q Consensus         1 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~-~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~   79 (96)
                      +|.+..+...+.+..|+.+.|.|.+.+.+. +.+.|++++..+.. ..+. ...       ....|.|.+++..|+|.|.
T Consensus         6 ~P~~~~~~~~v~~~~G~~v~L~C~~~g~~~~~~i~W~k~~~~l~~-~~~~-~~~-------~~~~L~I~~v~~~D~G~Y~   76 (93)
T d1n26a1           6 CPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGS-HPSR-WAG-------MGRRLLLRSVQLHDSGNYS   76 (93)
T ss_dssp             CCCCCCCTTEEEECTTCCEEEECTTSCTTCCSEEEEEEECSSSSC-CCEE-EEE-------ESSEEEECSCCGGGCEEEE
T ss_pred             CCcEEeCCCCEEEeCCCcEEEEEEeecCCCCceEEEEEccccccc-eeeE-Eec-------CCCEEEECCCChhcCEEEE
Confidence            366677778888999999999999988665 48999998765532 2222 211       2357999999999999999


Q ss_pred             EEEecCCCc
Q psy4613          80 CIAKNSLGE   88 (96)
Q Consensus        80 c~~~~~~g~   88 (96)
                      |.+.+..+.
T Consensus        77 C~a~n~~~~   85 (93)
T d1n26a1          77 CYRAGRPAG   85 (93)
T ss_dssp             EESSSSCSC
T ss_pred             EEECCcccc
Confidence            999886543

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=1.3e-15  Score=69.42  Aligned_cols=93  Identities=20%  Similarity=0.363  Sum_probs=63.8

Q ss_pred             CeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecc-cceEEEEeccc-cceEEEEEEEccCCCCCCeeEE
Q psy4613           2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISS-ERYEVESISRS-IFDFKMRLTIKKITKYDLGSYK   79 (96)
Q Consensus         2 p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~l~i~~~~~~d~g~y~   79 (96)
                      +.+...+..+.+..|+.+.|.|.+.+.|.|.+.|++++....... ........... .......|.|.++...|.|.|.
T Consensus         5 v~V~~~~~~v~v~~g~~v~L~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~   84 (105)
T d1nbqa1           5 VTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTREDTGTYT   84 (105)
T ss_dssp             CEEECSCSBCCEETTCCCEEECEEESCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEEETTEEECSCCCTTSCSEEE
T ss_pred             eEEECCCCeEEEeCCCeEEEEEEeCCCCCCeeEEEeeeeceeeeeeccceeeccccceeeecCceEEEecccccceeeEE
Confidence            355666777889999999999999999999999998754433110 00000000000 0001246899999999999999


Q ss_pred             EEEecCCCceEEEEE
Q psy4613          80 CIAKNSLGEVESSIR   94 (96)
Q Consensus        80 c~~~~~~g~~~~~~~   94 (96)
                      |.+.|..|.......
T Consensus        85 C~a~n~~G~~~~~~~   99 (105)
T d1nbqa1          85 CMVSEEGGNSYGEVK   99 (105)
T ss_dssp             EEEEETTSSCEECCE
T ss_pred             EEEEECCCCEEEEEE
Confidence            999999998765543

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=1.8e-15  Score=71.18  Aligned_cols=83  Identities=18%  Similarity=0.261  Sum_probs=61.4

Q ss_pred             CceeeecCCCcEEEEEEeeecccceeEEeeccceeEec----------------------------ccceEEEEeccccc
Q psy4613           8 NQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVIS----------------------------SERYEVESISRSIF   59 (96)
Q Consensus         8 ~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~----------------------------~~~~~~~~~~~~~~   59 (96)
                      +..+.+..|+.+.|.|.+.|.|.|.+.|++++..+...                            ..+......     
T Consensus        16 ~~~v~v~~G~~v~L~C~v~G~P~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-----   90 (130)
T d1gxea_          16 PDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCETEGRVRVETT-----   90 (130)
T ss_dssp             CCEEEESSSSCCCCEEECCSBSCCEEEEEEECCCSCSSCCCCCCCCCCCCCCSSCCCCSCCCCCSCSSSCEEEEE-----
T ss_pred             CCCEEEEcCCeEEEEEEEEEecCCeEEEeeCCeEccCCccceeeecccccccceeeecCCceeeccCceEEEEEC-----
Confidence            35677899999999999999999999999864322100                            011111110     


Q ss_pred             eEEEEEEEccCCCCCCeeEEEEEecCCCceEEEEEe
Q psy4613          60 DFKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL   95 (96)
Q Consensus        60 ~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~~~~~~l   95 (96)
                      .....|.|.++...|+|.|.|.+.|..|.....+.|
T Consensus        91 ~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l  126 (130)
T d1gxea_          91 KDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTV  126 (130)
T ss_dssp             TTEEEEECSCCCTTTCEEEEEEEECSSCEEEEEEEE
T ss_pred             CCEEEEEECcCChhcCEEEEEEEEECCCEEEEEEEE
Confidence            024679999999999999999999999988777655

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=1.7e-14  Score=64.79  Aligned_cols=86  Identities=19%  Similarity=0.145  Sum_probs=58.3

Q ss_pred             CCeEEecCceeeecCCCcEEEEEEeeecccceeEEee--ccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeE
Q psy4613           1 HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVR--DQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSY   78 (96)
Q Consensus         1 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y   78 (96)
                      +|.+. ....+.+..|+++.|.|.+.+.|.|...|++  .+.... ...+.....    .......|.|.++...|.|.|
T Consensus         2 ~P~f~-~~~~~~v~~G~~v~l~C~~~g~p~p~~~~~~~~~~~~~~-~~~~~~~~~----~~~~~~~L~I~~v~~~D~G~Y   75 (96)
T d2c9aa1           2 TPHFL-RIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDA-PLKEIKVTS----SRRFIASFNVVNTTKRDAGKY   75 (96)
T ss_dssp             SCEEC-CCCCEEECSSSCEEEEEEEESCCCSSCEEEEEETTBCCC-CEEEEEEEE----TTEEEEEEEECSCCGGGCSEE
T ss_pred             cCeec-ccCCEEEeCCCEEEEEEEEeecCCCcEEEEEeeeeeeee-cCCceeEEE----eecCceEEEECCCCHHHCeEE
Confidence            46675 4677889999999999999999888655432  222211 111111111    011346799999999999999


Q ss_pred             EEEEecCCCceEEE
Q psy4613          79 KCIAKNSLGEVESS   92 (96)
Q Consensus        79 ~c~~~~~~g~~~~~   92 (96)
                      .|.+.|..|.....
T Consensus        76 ~C~a~N~~G~~~s~   89 (96)
T d2c9aa1          76 RCMIRTEGGVGISN   89 (96)
T ss_dssp             EEEEEETTEEEEEE
T ss_pred             EEEEEeCCCeEEEE
Confidence            99999999975443

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=2e-14  Score=64.33  Aligned_cols=73  Identities=19%  Similarity=0.319  Sum_probs=55.0

Q ss_pred             CceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCC
Q psy4613           8 NQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSL   86 (96)
Q Consensus         8 ~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~   86 (96)
                      ...+.+..|+.+.|.|.+. .|.+.+.|++++..+.....++......     ....|.|.++...|.|.|.|.+.|..
T Consensus        13 ~~~~~v~~G~~v~l~c~v~-~p~~~v~W~k~g~~i~~~~~~~~~~~~~-----~~~~L~I~~~~~~D~G~Y~c~a~n~~   85 (94)
T d1pd6a_          13 EPAYQVSKGHKIRLTVELA-DHDAEVKWLKNGQEIQMSGSKYIFESIG-----AKRTLTISQCSLADDAAYQCVVGGEK   85 (94)
T ss_dssp             CSEEEEETTSCEEEEEECS-SSSSCCEEEESSSEECCCSSSSEEEEET-----TEEEEEECSCSSSSCEEEEEEETTEE
T ss_pred             CCCEEECcCCeEEEEEEEC-CCCceEEEEEcCccceeeeeeEeeeccC-----CeEEeecCCCCceecEEEEEEEeeEE
Confidence            3456788999999999985 4888999999987765333344433321     24679999999999999999987643

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=1.2e-16  Score=70.24  Aligned_cols=69  Identities=19%  Similarity=0.153  Sum_probs=54.8

Q ss_pred             CceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCC
Q psy4613           8 NQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLG   87 (96)
Q Consensus         8 ~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g   87 (96)
                      +..+.+..|+.+.|.|.+.|.|.|.+.|++++..+...                   +.+..++..|+|.|.|.+.|..|
T Consensus        11 p~~~~~~~G~~~~l~C~a~G~P~P~v~W~k~g~~~~~~-------------------~~~~~v~~~d~G~Y~C~A~N~~G   71 (84)
T d2oz4a3          11 PGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPI-------------------GESVTVTRDLEGTYLCRARSTQG   71 (84)
T ss_dssp             CSEEEEETTCEECCCCCCEEESCCEEEEEETTTEECCT-------------------TSCEECCGGGCEEEEEEEEETTE
T ss_pred             CccEEEeCCCEEEEEEEEeEcCccEEEEEEeeccceee-------------------eeeeccccCCCCEEEEEEEcCCC
Confidence            46678899999999999999999999999986544311                   11234677899999999999999


Q ss_pred             ceEEEEEe
Q psy4613          88 EVESSIRL   95 (96)
Q Consensus        88 ~~~~~~~l   95 (96)
                      .....+.|
T Consensus        72 ~~~~~~~l   79 (84)
T d2oz4a3          72 EVTREVTV   79 (84)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEEE
Confidence            87766654

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=3.9e-14  Score=64.54  Aligned_cols=78  Identities=26%  Similarity=0.287  Sum_probs=56.5

Q ss_pred             CCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCceEEEEEe
Q psy4613          16 DTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL   95 (96)
Q Consensus        16 g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~~~~~~l   95 (96)
                      +....+.|.+.|.|.|.+.|++++..+. ...+....... ........|.|.++...|.|.|.|.+.|..|.....+.|
T Consensus        17 ~~~~~i~~~v~G~P~P~v~W~~n~~~i~-~~~~~~~~~~~-~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~v   94 (105)
T d1wwca_          17 RLEHCIEFVVRGNPPPTLHWLHNGQPLR-ESKIIHVEYYQ-EGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTING   94 (105)
T ss_dssp             CCEEEEEEEEECSSCCEEEEEETTEECC-CSSSEEEEEEE-CSSEEEEEEEEESCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred             EEEEEEEEEEEEeCCCeEEEEeCccccC-CCcceeeeEEe-ecccceEEEEEeecccccceEEEEEEEcCCCEEEEEEEE
Confidence            3345577889999999999999876553 23333322211 112235679999999999999999999999988877765

>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.57  E-value=1.7e-15  Score=69.15  Aligned_cols=80  Identities=24%  Similarity=0.324  Sum_probs=59.1

Q ss_pred             cCceeeecCCCcEEEEEEe-eecccceeEEeeccceeEec-ccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEec
Q psy4613           7 PNQLVGAPIDTDVTLECYV-EAYPKSINYWVRDQGDMVIS-SERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKN   84 (96)
Q Consensus         7 ~~~~~~~~~g~~~~l~c~~-~~~~~~~~~w~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~   84 (96)
                      +...+.+..|+.+.|.|.+ .+.|.+.+.|++++..+... ..+.....       ....|.|.+++..|.|.|.|.+.|
T Consensus        10 ~~~~v~v~eG~~~~l~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~~-------~~~~L~I~~v~~~D~G~Y~C~a~N   82 (105)
T d1cs6a2          10 ERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQ-------TTGNLYIAKTEASDLGNYSCFATS   82 (105)
T ss_dssp             CCCCEEEETTSCEEECCCCCSEESCCEEEEEESSTTCBCCCCSSEEECT-------TTCCEEESSCCGGGCEEEEEEEEE
T ss_pred             CCCCEEEeCCCeEEEEEEccCCCCCCEEEEEEeeccccccccceeeeec-------CCCEEeecccccccCcEEEEEEEE
Confidence            3455778999999999997 68889999999987654322 22221111       124689999999999999999999


Q ss_pred             CCCceEEEE
Q psy4613          85 SLGEVESSI   93 (96)
Q Consensus        85 ~~g~~~~~~   93 (96)
                      ..|.....+
T Consensus        83 ~~g~~~~~v   91 (105)
T d1cs6a2          83 HIDFITKSV   91 (105)
T ss_dssp             EETTEEEEE
T ss_pred             CCCCEEEEE
Confidence            888766543

>d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=99.55  E-value=2.6e-14  Score=62.70  Aligned_cols=74  Identities=20%  Similarity=0.196  Sum_probs=54.8

Q ss_pred             CCeEEecCceeeecCCCcEEEEEEeeecccceeEE-eeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEE
Q psy4613           1 HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYW-VRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYK   79 (96)
Q Consensus         1 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~   79 (96)
                      +|.+...+....+..|++++|.|.+.+.+.+...| ++++..+. .               ....|.|.+++..|+|.|.
T Consensus         5 kpvi~~~P~~~~v~~G~~vtL~C~~~~~~~~~~~~~~~~~~~~~-~---------------~~~~l~i~~~~~~d~G~Y~   68 (84)
T d1fnla1           5 KAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLIS-S---------------QASSYFIDAATVNDSGEYR   68 (84)
T ss_dssp             CCEEEEESCCSEEETTCCEEEEEECCCBTTBCCCEEEETTEEEE-S---------------SCSEEEESSCCGGGCEEEE
T ss_pred             CCEEEECCCCcEEeCCCeEEEEEEeccCCCCeEEEEeeeceeee-e---------------cceeeEecCCcccCCEEEE
Confidence            46666666667789999999999999988886554 55543321 1               1246889999999999999


Q ss_pred             EEEecCCCceE
Q psy4613          80 CIAKNSLGEVE   90 (96)
Q Consensus        80 c~~~~~~g~~~   90 (96)
                      |.+.+...+..
T Consensus        69 C~a~~s~~S~~   79 (84)
T d1fnla1          69 CQTNLSTLSDP   79 (84)
T ss_dssp             EECSSSCCCCC
T ss_pred             EEccCCCcccc
Confidence            99887765543

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=7e-14  Score=63.89  Aligned_cols=76  Identities=17%  Similarity=0.166  Sum_probs=54.8

Q ss_pred             EEEEEEeeecccceeEEeeccceeEecccceEEEE--eccccceEEEEEEEccCCCCCCeeEEEEEecCCCceEEEEEe
Q psy4613          19 VTLECYVEAYPKSINYWVRDQGDMVISSERYEVES--ISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL   95 (96)
Q Consensus        19 ~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~~~~~~l   95 (96)
                      ..+.|.+.|.|.|.+.|++++..+. ...+.....  ...........|.|.++...|.|.|.|.+.|..|.....+.|
T Consensus        18 ~ci~~~v~G~P~P~v~W~~ng~~l~-~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~A~N~~G~~~~~i~v   95 (107)
T d1he7a_          18 WCIPFSVDGQPAPSLRWLFNGSVLN-ETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMA   95 (107)
T ss_dssp             EEEEEEECCSSCCEEEEEETTEECC-CCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred             EEEEEEEEEecCCeEEEEEeeeEcc-CccceeeeeeeeeeeeeccceEEEECcccHHHCcEEEEEEEeCCCEEEEEEEE
Confidence            3455688999999999999876553 223322221  111122245679999999999999999999999998887766

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=3.4e-14  Score=63.08  Aligned_cols=76  Identities=21%  Similarity=0.274  Sum_probs=56.2

Q ss_pred             ecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEec-ccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEec
Q psy4613           6 VPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVIS-SERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKN   84 (96)
Q Consensus         6 ~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~   84 (96)
                      .+...+.+..|+.+.|.|.+. .|.+.+.|++++..+... ..++......     ....|.|.++...|.|.|.|.+.|
T Consensus         5 ~~l~~~~v~~G~~v~l~C~v~-~p~~~v~W~k~~~~~~~~~~~~~~~~~~~-----~~~~L~I~~v~~~D~G~Y~C~a~n   78 (90)
T d1x44a1           5 KQLEDTTAYCGERVELECEVS-EDDANVKWFKNGEEIIPGPKSRYRIRVEG-----KKHILIIEGATKADAAEYSVMTTG   78 (90)
T ss_dssp             BCCCCEEEETTEEEEEEEECS-SSSCCCEEEETTEECCCSTTCSEEEEEET-----TEEEEEEEEECTTTCSEEEEEETT
T ss_pred             cCCCCEEEeCCCcEEEEEEEC-CCCceEEEEEeecccCCCCCccEEEEEeC-----CccEEEECccccccCEEEEEEEec
Confidence            456778899999999999984 588899999987655422 2233333211     246799999999999999999877


Q ss_pred             CCC
Q psy4613          85 SLG   87 (96)
Q Consensus        85 ~~g   87 (96)
                      ..+
T Consensus        79 ~~~   81 (90)
T d1x44a1          79 GQS   81 (90)
T ss_dssp             EEE
T ss_pred             ceE
Confidence            533

>d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Semaphorin 4d Ig-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=2.1e-15  Score=67.29  Aligned_cols=74  Identities=16%  Similarity=0.284  Sum_probs=55.9

Q ss_pred             ceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCc
Q psy4613           9 QLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGE   88 (96)
Q Consensus         9 ~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~   88 (96)
                      ....+..|+++.|.|.+.+ +.|.+.|++++..+.....++...        ....|.|.++...|.|.|.|.+.|..|.
T Consensus         5 ~~~~~~~G~~~~l~C~~~g-~~~~v~W~~~g~~l~~~~~~~~~~--------~~~~L~I~~v~~~DsG~Y~C~A~n~~g~   75 (92)
T d1olza1           5 RQHFFKHGGTAELKCSQKS-NLARVFWKFQNGVLKAESPKYGLM--------GRKNLLIFNLSEGDSGVYQCLSEERVKN   75 (92)
T ss_dssp             EEEEEETTSCEEECCCCSC-TTCEEEEEESSSBCCCCSSSBCCT--------TTTCEEECSCCGGGCEEEEEEEEEECSS
T ss_pred             hheeEeCCCEEEEEEEeec-cCCceeeecCcccceeeeeeeecc--------eeeEEEECCCCHHHCcEEEEEEEEcCCC
Confidence            3466889999999999988 678999999876654333332211        1235999999999999999999998776


Q ss_pred             eEE
Q psy4613          89 VES   91 (96)
Q Consensus        89 ~~~   91 (96)
                      ...
T Consensus        76 ~~~   78 (92)
T d1olza1          76 KTV   78 (92)
T ss_dssp             SEE
T ss_pred             EEE
Confidence            543

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=5e-16  Score=70.75  Aligned_cols=84  Identities=21%  Similarity=0.268  Sum_probs=57.3

Q ss_pred             ceeeecCCCcEEEEEEee-ecccceeEEeeccceeEecccceEEEEecc--ccceEEEEEEEccCCCCCCeeEEEEEecC
Q psy4613           9 QLVGAPIDTDVTLECYVE-AYPKSINYWVRDQGDMVISSERYEVESISR--SIFDFKMRLTIKKITKYDLGSYKCIAKNS   85 (96)
Q Consensus         9 ~~~~~~~g~~~~l~c~~~-~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~i~~~~~~d~g~y~c~~~~~   85 (96)
                      ....+..|+.+.|.|.+. +.|.+.+.|++++..+... .+........  ........|.|.++...|.|.|.|.+.|.
T Consensus        10 ~~~~v~~G~~v~l~C~~~~g~p~p~v~W~~~~~~i~~~-~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~N~   88 (104)
T d1nbqa2          10 IPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTN-PKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNG   88 (104)
T ss_dssp             CBSEEETTSCEEECCCCCSCBSCCEEEEEETTCCCCSC-SSSSSSCTTCCCCCCTTTCCEEESSCCGGGCCCEEEEEECS
T ss_pred             CCCEEecCCcEEEEEEeecCCCCCEEEEEECCEEccCC-CceeEEeeCCcEEEeecccceEECCCCcccCcEEEEEEEEC
Confidence            344578899999999974 7889999999987655321 1110000000  00002356889999999999999999999


Q ss_pred             CCceEEEE
Q psy4613          86 LGEVESSI   93 (96)
Q Consensus        86 ~g~~~~~~   93 (96)
                      .|....+.
T Consensus        89 ~G~~~~s~   96 (104)
T d1nbqa2          89 YGTPMTSN   96 (104)
T ss_dssp             SSCCEECC
T ss_pred             CCceEEEE
Confidence            99876554

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=5.9e-15  Score=68.22  Aligned_cols=93  Identities=30%  Similarity=0.422  Sum_probs=64.4

Q ss_pred             CCeEEecCceeeecCCCcEEEEEEeeecc-cceeEEeeccceeEe-cccceEEEEeccccceEEEEEEEccCCCCC-Cee
Q psy4613           1 HPVIHVPNQLVGAPIDTDVTLECYVEAYP-KSINYWVRDQGDMVI-SSERYEVESISRSIFDFKMRLTIKKITKYD-LGS   77 (96)
Q Consensus         1 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~-~~~~~w~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d-~g~   77 (96)
                      ||.+.. +....+..|+.+.|.|.+.+.+ .+.+.|++++..+.. ...++.+..... .....+.|.|.++...| .|.
T Consensus         7 Pp~i~~-~~~~~~~~G~~~~l~C~v~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~-~~~~~s~L~I~~v~~~D~~G~   84 (115)
T d2crya1           7 PPIISS-TQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETIST-EEGVISTLTISNIVRADFQTI   84 (115)
T ss_dssp             SCCEEE-ECCCCCCTTSCCCCCEEECCSSCCSEEEEESSSCEECSEEETTEEEEEEEE-TTEEEEEEECTTCCHHHHHSC
T ss_pred             CCEEec-CCCEEEecCCEEEEEEEeecCCCeeEEEEeeeeeeEeeeeeeeEeeeeecc-ccCcEEEEEEeccchhcCCeE
Confidence            345543 3445678899999999998854 557889888665532 223343332211 11234679999999999 589


Q ss_pred             EEEEEecCCCceEEEEEe
Q psy4613          78 YKCIAKNSLGEVESSIRL   95 (96)
Q Consensus        78 y~c~~~~~~g~~~~~~~l   95 (96)
                      |.|.+.|..|.....+.|
T Consensus        85 Y~C~A~N~~G~~~~~~~L  102 (115)
T d2crya1          85 YNCTAWNSFGSDTEIIRL  102 (115)
T ss_dssp             EEEEEECSSCEEEEEECC
T ss_pred             EEEEEEECCCeEEEEEEE
Confidence            999999999998887765

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.52  E-value=2.1e-15  Score=69.28  Aligned_cols=79  Identities=24%  Similarity=0.383  Sum_probs=53.2

Q ss_pred             eecCCCcEEEEEEee-ecccceeEEeeccceeEecccceEEEEeccc---cceEEEEEEEccCCCCCCeeEEEEEecCCC
Q psy4613          12 GAPIDTDVTLECYVE-AYPKSINYWVRDQGDMVISSERYEVESISRS---IFDFKMRLTIKKITKYDLGSYKCIAKNSLG   87 (96)
Q Consensus        12 ~~~~g~~~~l~c~~~-~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g   87 (96)
                      .+..|+.+.|.|.+. +.|.+.+.|++++..+... ...........   .......|.|.+++..|.|.|.|.+.|..|
T Consensus        13 ~v~~G~~v~L~C~~~~g~p~~~v~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~N~~G   91 (110)
T d1f97a2          13 SVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTA-DAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYG   91 (110)
T ss_dssp             EEETTSCEEEEEECSCCBSCCEEEEEETTEESBC------CBSCSSSCEEECTTTCCEEESSCCGGGCEEEEEEEECSSS
T ss_pred             EEecCCeEEEEEEeecCCCCCEEEEEeCCeEecCC-CceeEEeecCceEEEeecccceEECCCCccCCEEEEEEEEECCC
Confidence            467899999999975 7889999999986544211 11100000000   000124688999999999999999999998


Q ss_pred             ceEE
Q psy4613          88 EVES   91 (96)
Q Consensus        88 ~~~~   91 (96)
                      ....
T Consensus        92 ~~~~   95 (110)
T d1f97a2          92 TAMR   95 (110)
T ss_dssp             CCEE
T ss_pred             cEEE
Confidence            7654

>d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.50  E-value=8e-14  Score=62.51  Aligned_cols=78  Identities=22%  Similarity=0.331  Sum_probs=56.9

Q ss_pred             CeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEE
Q psy4613           2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCI   81 (96)
Q Consensus         2 p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~   81 (96)
                      |.+..  ....+..|+.+.|.|.+.+ +.+.+.|++++..+. ...+.....       ....|.|.++...|.|.|.|.
T Consensus         6 P~i~~--~~~~v~~g~~v~l~C~~~~-~~~~v~W~~~~~~l~-~~~~~~~~~-------~~~~L~I~~v~~~d~G~Y~C~   74 (96)
T d1l6za2           6 PFLQV--TNTTVKELDSVTLTCLSND-IGANIQWLFNSQSLQ-LTERMTLSQ-------NNSILRIDPIKREDAGEYQCE   74 (96)
T ss_dssp             CCEEC--SCSEECTTSCEEEEECCCC-SSCEEEEEETTEECC-CCTTEEEET-------TTTEEEECSCCGGGCEEEEEE
T ss_pred             CeEEc--CceEEeCCCeEEEEEccCC-CCCCEEEEEeeeecc-cccceeccC-------CceEEEEeccchhhceEEEEE
Confidence            44443  3345788999999999866 567899999876553 334443322       124689999999999999999


Q ss_pred             EecCCCceE
Q psy4613          82 AKNSLGEVE   90 (96)
Q Consensus        82 ~~~~~g~~~   90 (96)
                      +.|..|...
T Consensus        75 a~N~~g~~~   83 (96)
T d1l6za2          75 ISNPVSVRR   83 (96)
T ss_dssp             EESSSCCEE
T ss_pred             EEeCCCCeE
Confidence            999888653

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

Probab=99.50  E-value=9.8e-15  Score=64.74  Aligned_cols=78  Identities=15%  Similarity=0.083  Sum_probs=59.8

Q ss_pred             EecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEec
Q psy4613           5 HVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKN   84 (96)
Q Consensus         5 ~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~   84 (96)
                      ..+...+.+..|+++.|.|.+ +.|.+.+.|++++..+. ...++......     ....|.|.++...|+|.|.|.+.|
T Consensus         5 ~~~l~d~~v~~G~~~~~~c~v-s~p~~~v~W~k~g~~i~-~~~~~~~~~~~-----~~~~L~I~~~~~~D~G~Y~c~a~n   77 (89)
T d1tiua_           5 EKPLYGVEVFVGETAHFEIEL-SEPDVHGQWKLKGQPLT-ASPDCEIIEDG-----KKHILILHNCQLGMTGEVSFQAAN   77 (89)
T ss_dssp             SBCCCCEEEETTSCCCEEEBC-SSSSCCCBCCSSSCCCC-SSSSCEEEECS-----SCEEEECCSCCSCCCSEECCBCSS
T ss_pred             EcCCcCEEEeCCCcEEEEEEE-CCCCcEEEEEEeeeecc-cceeEEEEeec-----eeEEEEEcCCChhcCEEEEEEECc
Confidence            346677889999999999997 46888999999876654 44555544321     236799999999999999999887


Q ss_pred             CCCce
Q psy4613          85 SLGEV   89 (96)
Q Consensus        85 ~~g~~   89 (96)
                      ..+..
T Consensus        78 ~~~sa   82 (89)
T d1tiua_          78 AKSAA   82 (89)
T ss_dssp             CBCCE
T ss_pred             eEEEE
Confidence            65543

>d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=9.7e-15  Score=63.84  Aligned_cols=74  Identities=18%  Similarity=0.220  Sum_probs=52.6

Q ss_pred             CCeEEecCceeeecCCCcEEEEEEeeecccceeE-EeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEE
Q psy4613           1 HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINY-WVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYK   79 (96)
Q Consensus         1 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~-w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~   79 (96)
                      +|.|...+....+..|+.+.|.|.+.+.+.+... |++++..+. .               ....|.|..++..|+|.|.
T Consensus         1 KP~It~~P~~~~v~~G~~v~L~C~~~~~~~~~~~~~~~~~~~~~-~---------------~~~~l~i~~v~~~d~G~Y~   64 (82)
T d1f2qa1           1 KPKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSE-E---------------TNSSLNIVNAKFEDSGEYK   64 (82)
T ss_dssp             CCCCEEESSCSEEETTCCEEEECCTTCC----CCEEEETTEECS-C---------------CSSEEEECSCCGGGCEEEE
T ss_pred             CCEEEEcCCCeEEeCCCeEEEEEEEeeeeeecceeeeeeeeeee-c---------------ccceeEECCCChhhCCcEE
Confidence            4777777766778999999999999998887554 555543321 1               1245889999999999999


Q ss_pred             EEEecCCCceE
Q psy4613          80 CIAKNSLGEVE   90 (96)
Q Consensus        80 c~~~~~~g~~~   90 (96)
                      |.+.+..++..
T Consensus        65 C~a~~s~~S~~   75 (82)
T d1f2qa1          65 CQHQQVNESEP   75 (82)
T ss_dssp             EECTTSSCCCC
T ss_pred             EEecCCCCccc
Confidence            99988766544

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=6.6e-14  Score=63.35  Aligned_cols=81  Identities=16%  Similarity=0.236  Sum_probs=60.7

Q ss_pred             CceeeecCCCcEEEEEEee-ecccceeEEeeccceeEe-cccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecC
Q psy4613           8 NQLVGAPIDTDVTLECYVE-AYPKSINYWVRDQGDMVI-SSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNS   85 (96)
Q Consensus         8 ~~~~~~~~g~~~~l~c~~~-~~~~~~~~w~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~   85 (96)
                      +..+.+..|+.+.|.|.+. +.+.+.+.|++++..... .....++..       ....|.|.+++..|.|.|.|.+.|.
T Consensus         9 ~~~~~~~~~e~~~l~C~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~-------~~~~L~I~~v~~~D~G~Y~C~a~N~   81 (101)
T d1iray1           9 KIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQ-------HKEKLWFVPAKVEDSGHYYCVVRNS   81 (101)
T ss_dssp             CCCEEEETTSCEEECCCCCGGGCSSEEEEECSSTTSBCCCCTTSSEEE-------ETTEEEETTCCGGGCEEEEEEEEET
T ss_pred             CcEEEEeCCCeEEEEeeCCCCCCCceEEEEECCcccccccccceEEec-------cCCEEEeccceecCCEEEEEEEECC
Confidence            4456788899999999875 668889999998754432 112222222       2257999999999999999999999


Q ss_pred             CCceEEEEEe
Q psy4613          86 LGEVESSIRL   95 (96)
Q Consensus        86 ~g~~~~~~~l   95 (96)
                      .|.....+.|
T Consensus        82 ~g~~~~~~~L   91 (101)
T d1iray1          82 SYCLRIKISA   91 (101)
T ss_dssp             TEEEEEEEEE
T ss_pred             CCeEEEEEEE
Confidence            9988777655

>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=99.48  E-value=4.1e-13  Score=59.29  Aligned_cols=65  Identities=12%  Similarity=0.151  Sum_probs=49.9

Q ss_pred             eeecCCCcEEEEEEeeec-ccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCce
Q psy4613          11 VGAPIDTDVTLECYVEAY-PKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEV   89 (96)
Q Consensus        11 ~~~~~g~~~~l~c~~~~~-~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~   89 (96)
                      ..+.+|+.+.|.|.+.+. |.+.+.|++++..+....              ....|.|..+...|+|.|.|.+.|..|..
T Consensus        10 ~~v~eG~~v~L~C~~~~~~p~~~~~W~k~g~~~~~~~--------------~~~~l~i~~v~~~dsG~Y~C~a~n~~g~~   75 (88)
T d2fcba2          10 LEFQEGETIVLRCHSWKDKPLVKVTFFQNGKSKKFSR--------------SDPNFSIPQANHSHSGDYHCTGNIGYTLY   75 (88)
T ss_dssp             SEECTTCCEEEEEEEGGGCCCEEEEEEETTEEEEEES--------------SCCEEEETTCCGGGCEEEEEEEEETTEEE
T ss_pred             CeEecCCeEEEEEEecCCCCCcEEEEEeecccccccc--------------cccccccCccCHHHCCeEEEEEEeCCCCE
Confidence            447899999999998654 566899999865442111              12468899999999999999999987754

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=2.5e-13  Score=61.63  Aligned_cols=79  Identities=14%  Similarity=0.182  Sum_probs=56.3

Q ss_pred             CCeEEecCceeeecCCCcEEEEEEeee-cccc--eeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCee
Q psy4613           1 HPVIHVPNQLVGAPIDTDVTLECYVEA-YPKS--INYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGS   77 (96)
Q Consensus         1 ~p~~~~~~~~~~~~~g~~~~l~c~~~~-~~~~--~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~   77 (96)
                      ++.+...+....+..|+.++|.|.+.+ .|.+  .+.|++++..+.....         ......+.|.|...+..|.|.
T Consensus         4 P~~v~i~p~~~~v~~G~~~~L~C~v~g~~P~p~~~v~W~~~~~~l~~~~~---------~~~~~~s~l~i~~~~~dd~g~   74 (103)
T d1iama1           4 PERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPA---------VGEPAEVTTTVLVRRDHHGAQ   74 (103)
T ss_dssp             CSEEEECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEEC---------CTTTEEEEEEEECCSSCSSCE
T ss_pred             CCceEEeCCCceEeCCCEEEEEEEecCCCCCCceEEEEcccccccccccc---------ccccceEEEEEeeehhHCCCE
Confidence            355666555666889999999999986 4545  5779988655532100         011135678999999999999


Q ss_pred             EEEEEecCCCc
Q psy4613          78 YKCIAKNSLGE   88 (96)
Q Consensus        78 y~c~~~~~~g~   88 (96)
                      |.|.+.|..|.
T Consensus        75 ytC~A~n~~g~   85 (103)
T d1iama1          75 FSCRTELDLRP   85 (103)
T ss_dssp             EEEEEEEECGG
T ss_pred             EEEEEEeCCCC
Confidence            99999997775

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=2e-13  Score=61.94  Aligned_cols=70  Identities=20%  Similarity=0.312  Sum_probs=53.1

Q ss_pred             eeecCCCcEEEEE------EeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEec
Q psy4613          11 VGAPIDTDVTLEC------YVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKN   84 (96)
Q Consensus        11 ~~~~~g~~~~l~c------~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~   84 (96)
                      ..+..|+...|.|      ...+.|.|.+.|++++..+.....+...         ....|.|.++...|+|.|.|.+.|
T Consensus         9 q~~~~g~~~~l~Cp~~~~~~~~~~p~P~i~W~kdg~~l~~~~~~~~~---------~~~~L~I~~v~~~D~G~Y~C~a~n   79 (103)
T d1iray2           9 QKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSG---------VKDRLIVMNVAEKHRGNYTCHASY   79 (103)
T ss_dssp             EEEESSSCEEEECTTGGGGCBTTTBCCCCEEEETTEECCCCSSSEEE---------ETTEEEESSCCGGGCEEEEEEEEE
T ss_pred             EEEecCCCEEEEcCCccccccCCCCCCEEEEEECCccccCCCcEEEe---------cCCEEEEcccccccCcEEEEEEEE
Confidence            4578899999999      4567888999999987665433223222         124699999999999999999998


Q ss_pred             CCCce
Q psy4613          85 SLGEV   89 (96)
Q Consensus        85 ~~g~~   89 (96)
                      ..|..
T Consensus        80 ~~~g~   84 (103)
T d1iray2          80 TYLGK   84 (103)
T ss_dssp             EETTE
T ss_pred             CcCCE
Confidence            77643

>d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=99.45  E-value=4.6e-14  Score=62.04  Aligned_cols=74  Identities=19%  Similarity=0.243  Sum_probs=54.3

Q ss_pred             CeEEecCceeeecCCCcEEEEEEeeecccc-eeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEE
Q psy4613           2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKS-INYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKC   80 (96)
Q Consensus         2 p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c   80 (96)
                      |.+...+....+..|+.++|.|.+.+.+.+ .+.|++++..+. .               ....|.|..++..|.|.|.|
T Consensus         5 p~i~~~P~~~~v~~G~~v~L~C~~~~~~~~~~~~w~~~g~~~~-~---------------~~~~l~i~~v~~~dsG~Y~C   68 (85)
T d2fcba1           5 AVLKLEPQWINVLQEDSVTLTCRGTHSPESDSIQWFHNGNLIP-T---------------HTQPSYRFKANNNDSGEYTC   68 (85)
T ss_dssp             CEEEEESCCSEEETTCEEEEEEECSSCCCTTCCEEEETTEECT-T---------------CCSSEEEEECCGGGCEEEEE
T ss_pred             CEEEECCCCeEEcCCCeEEEEEEEeeccceeEEEeeccccccc-c---------------cccceEEeeccccCCcEEEE
Confidence            456666666778899999999999888776 466776654332 1               11347788899999999999


Q ss_pred             EEecCCCceEE
Q psy4613          81 IAKNSLGEVES   91 (96)
Q Consensus        81 ~~~~~~g~~~~   91 (96)
                      .+.+..++...
T Consensus        69 ~a~ns~~S~~v   79 (85)
T d2fcba1          69 QTGQTSLSDPV   79 (85)
T ss_dssp             ECTTSBCCCCE
T ss_pred             ECCCCcccccE
Confidence            99887665443

>d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=99.45  E-value=5.4e-13  Score=59.02  Aligned_cols=66  Identities=18%  Similarity=0.111  Sum_probs=49.8

Q ss_pred             eeeecCCCcEEEEEEeee-cccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCc
Q psy4613          10 LVGAPIDTDVTLECYVEA-YPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGE   88 (96)
Q Consensus        10 ~~~~~~g~~~~l~c~~~~-~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~   88 (96)
                      ...+..|+.+.|.|.+.+ .|.+.+.|++++..+...       .       ....+.|.++...|+|.|.|.+.|..|.
T Consensus        11 ~~~v~eG~~v~L~C~~~~~~p~~~~~W~kng~~~~~~-------~-------~~~~l~I~~v~~~dsG~Y~C~a~n~~~~   76 (89)
T d1fnla2          11 RWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKYF-------H-------HNSDFHIPKATLKDSGSYFCRGLVGSKN   76 (89)
T ss_dssp             CSEEETTCCEEEEEEECTTCCCEEEEEEETTEEEEEE-------E-------ECCCEEESSCCGGGCEEEEEEEEETTEE
T ss_pred             CCeEccCCeEEEEEEecCCCCCcEEEEEEccccccee-------c-------cccccEECccceeccceEEEEEEeCCCC
Confidence            345789999999999864 456689999986543211       1       1246789999999999999999987764


Q ss_pred             e
Q psy4613          89 V   89 (96)
Q Consensus        89 ~   89 (96)
                      .
T Consensus        77 ~   77 (89)
T d1fnla2          77 V   77 (89)
T ss_dssp             E
T ss_pred             e
Confidence            3

>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=3e-12  Score=56.54  Aligned_cols=64  Identities=16%  Similarity=0.059  Sum_probs=48.3

Q ss_pred             eeecCCCcEEEEEEeeec-ccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCc
Q psy4613          11 VGAPIDTDVTLECYVEAY-PKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGE   88 (96)
Q Consensus        11 ~~~~~g~~~~l~c~~~~~-~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~   88 (96)
                      ..+..|+.+.|.|.+.+. +...+.|++++..+... .             ....+.|.+++..|+|.|.|.+.|..+.
T Consensus        10 ~~V~eG~~v~L~C~~~~~~~~~~~~w~k~g~~~~~~-~-------------~~~~l~i~~~~~~dsG~Y~C~a~n~~~~   74 (89)
T d1f2qa2          10 EVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYW-Y-------------ENHNISITNATVEDSGTYYCTGKVWQLD   74 (89)
T ss_dssp             SEEETTSCEEEEEEEGGGCCEEEEEEEETTEECCSC-C-------------CSSEEEESSCCGGGCEEEEEEEEETTEE
T ss_pred             CeEeCCCEEEEEEEecCCCCCeEEEEEEeeeccccc-c-------------ccceEEEeeeeeecCcEEEEEEEeCCCC
Confidence            447889999999998765 44578899986544211 1             1246889999999999999999987664

>d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.30  E-value=2.3e-13  Score=62.51  Aligned_cols=76  Identities=24%  Similarity=0.343  Sum_probs=54.1

Q ss_pred             eeecCCCcEEEEEEe-eecccceeEEeeccceeEecc------cceEEEEeccccceEEEEEEEccCCCCCCe---eEEE
Q psy4613          11 VGAPIDTDVTLECYV-EAYPKSINYWVRDQGDMVISS------ERYEVESISRSIFDFKMRLTIKKITKYDLG---SYKC   80 (96)
Q Consensus        11 ~~~~~g~~~~l~c~~-~~~~~~~~~w~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g---~y~c   80 (96)
                      ..+.+|+.+.|.|.+ .|.|.|.+.|++++.......      .++...        ....|.|.+++..|+|   .|.|
T Consensus        12 ~t~~EG~~~~L~C~v~~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~--------~~~~L~i~~v~~~D~gd~g~Y~C   83 (111)
T d1biha2          12 KTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAG--------PDGNLYFTIVTKEDVSDIYKYVC   83 (111)
T ss_dssp             ECCBTTEEEEECCCCCEEESCCEEEEEEEETTSCGGGCCCCCCTTEEEC--------TTSCEEEEEECGGGCCSSEEEEE
T ss_pred             ccccCCCeEEEEEEcccCCCCCEEEEEeCCccccccccceeeeeeeccc--------cccccEEeeeEeeccCCceEEEE
Confidence            356789999999996 899999999999765443111      111111        1245888888887766   6999


Q ss_pred             EEecCCCceEEEEE
Q psy4613          81 IAKNSLGEVESSIR   94 (96)
Q Consensus        81 ~~~~~~g~~~~~~~   94 (96)
                      .+.|..|.......
T Consensus        84 ~A~N~~g~~~~~~~   97 (111)
T d1biha2          84 TAKNAAVDEEVVLV   97 (111)
T ss_dssp             EEECTTCSSCEEEE
T ss_pred             EEEeCCCCceEEEE
Confidence            99999987765543

>d1nezg_ b.1.1.1 (G:) CD8 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.30  E-value=5.7e-11  Score=55.24  Aligned_cols=84  Identities=20%  Similarity=0.283  Sum_probs=55.8

Q ss_pred             CCeEEecCceeeecCCCcEEEEEEeeecccceeEEeecc--ce------eEec-ccceEEEEecc----cc------ceE
Q psy4613           1 HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQ--GD------MVIS-SERYEVESISR----SI------FDF   61 (96)
Q Consensus         1 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~--~~------~~~~-~~~~~~~~~~~----~~------~~~   61 (96)
                      +|.+...|..+.+.+|++++|.|...+.....+.|++..  ..      +... ...........    ..      ...
T Consensus         1 a~~~~~~P~~~~~~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~   80 (122)
T d1nezg_           1 APELRIFPKKMDAELGQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSAMRDTNN   80 (122)
T ss_dssp             CCEEEEESSCEEECTTCCEEEEEEEESCCSSCEEEEEEESSCSSCCCEEEEEECSSSCCEEECTTTTGGGTEEEEEETTT
T ss_pred             CCceEEcCCEEEECCCCCEEEEEEEcCccCCCEEEEEECCCCCcCceEEEEeeeccccceeeccCCCCCcEEEEECCCCC
Confidence            688999999999999999999999887777789998732  11      1100 00000000000    00      002


Q ss_pred             EEEEEEccCCCCCCeeEEEEEec
Q psy4613          62 KMRLTIKKITKYDLGSYKCIAKN   84 (96)
Q Consensus        62 ~~~l~i~~~~~~d~g~y~c~~~~   84 (96)
                      ...|.|.+++.+|+|.|.|.+..
T Consensus        81 ~~~L~I~~~~~~Dsg~YyCa~~~  103 (122)
T d1nezg_          81 KYVLTLNKFSKENEGYYFCSVIS  103 (122)
T ss_dssp             EEEEEESSCCGGGCEEEEEEEEE
T ss_pred             EeEEEEcccccCCCEEEEeeEeC
Confidence            35799999999999999998764

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.29  E-value=1.1e-10  Score=54.37  Aligned_cols=90  Identities=22%  Similarity=0.308  Sum_probs=56.9

Q ss_pred             EEecCceeeecCCCcEEEEEEeeecc---cceeEEeeccceeE---e-c------------ccceEEEEeccccceEEEE
Q psy4613           4 IHVPNQLVGAPIDTDVTLECYVEAYP---KSINYWVRDQGDMV---I-S------------SERYEVESISRSIFDFKMR   64 (96)
Q Consensus         4 ~~~~~~~~~~~~g~~~~l~c~~~~~~---~~~~~w~~~~~~~~---~-~------------~~~~~~~~~~~~~~~~~~~   64 (96)
                      +..|...+.+..|++++|.|.+....   ...+.|++.+....   . .            ..+....  ..........
T Consensus         5 V~~p~~~V~~~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~--~~~~~~~~~s   82 (126)
T d1pkoa_           5 VIGPGHPIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELL--KESIGEGKVA   82 (126)
T ss_dssp             EECCSSCEEEETTSCEEEEEEEESCCCCTTSEEEEEEC--CCEEEEEETTEECGGGSCSTTTTSEEEE--CTTGGGTEEE
T ss_pred             EECCCCCEEEEcCCcEEEEEEEECcCCCCceEEEEeecCCcceEEEEEeccccccccccccceeEEEe--eccccCCeEE
Confidence            45566678899999999999875322   23578987532111   0 0            0111111  1111112578


Q ss_pred             EEEccCCCCCCeeEEEEEecCCCceEEEEEe
Q psy4613          65 LTIKKITKYDLGSYKCIAKNSLGEVESSIRL   95 (96)
Q Consensus        65 l~i~~~~~~d~g~y~c~~~~~~g~~~~~~~l   95 (96)
                      |.|.+++..|+|.|.|.+.+..+.....+.|
T Consensus        83 L~I~~v~~~D~G~Y~C~v~~~~~~~~~~v~L  113 (126)
T d1pkoa_          83 LRIQNVRFSDEGGYTCFFRDHSYQEEAAVEL  113 (126)
T ss_dssp             EEESSCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred             EEEEEEchhHCeEEEEEEEECCCEEEEEEEE
Confidence            9999999999999999999877766555544

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=5e-12  Score=57.51  Aligned_cols=78  Identities=12%  Similarity=0.112  Sum_probs=51.0

Q ss_pred             cCceeeecCCCcEEEEEEeeec---ccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEe
Q psy4613           7 PNQLVGAPIDTDVTLECYVEAY---PKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAK   83 (96)
Q Consensus         7 ~~~~~~~~~g~~~~l~c~~~~~---~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~   83 (96)
                      ......+..|..++|.|.+.+.   +.+.+.|++++..+...... .   .........+.|.+...+..|.|.|.|.+.
T Consensus         8 ~~~p~~v~~G~~v~l~C~v~g~~p~p~~~i~W~~~~~~i~~~~~~-~---~~~~~~~~~s~l~~~~~~~d~g~~ytC~A~   83 (106)
T d1zxqa1           8 TLQPTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFG-K---AAPAPQEATATFNSTADREDGHRNFSCLAV   83 (106)
T ss_dssp             EEESSEECTTSEEEEEEEECSCBCGGGEEEEEEETTEEEEEEECC-S---STTCTTCEEEEEEEECCGGGGGCEEEEEEE
T ss_pred             cCCCCEEeCCCEEEEEEEEeCcccCCCceEEEEcCCEEeeecccc-e---EeecccceeEEEEEeeehhcCCcEEEEEEE
Confidence            3344457789999999999863   44578899987665422110 0   001111134667777777788889999999


Q ss_pred             cCCCc
Q psy4613          84 NSLGE   88 (96)
Q Consensus        84 ~~~g~   88 (96)
                      |..+.
T Consensus        84 n~~~~   88 (106)
T d1zxqa1          84 LDLMS   88 (106)
T ss_dssp             EECGG
T ss_pred             ecCCC
Confidence            87653

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=4.6e-11  Score=52.95  Aligned_cols=82  Identities=16%  Similarity=0.150  Sum_probs=54.0

Q ss_pred             eeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccc-----eEEEEEEEccCCCCCCeeEEEEEec
Q psy4613          10 LVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIF-----DFKMRLTIKKITKYDLGSYKCIAKN   84 (96)
Q Consensus        10 ~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~i~~~~~~d~g~y~c~~~~   84 (96)
                      .+...+|++++|.|... .|.+.+.|.+++..+...... ..........     .....|.|.+++..|+|.|.|.+.+
T Consensus         4 ~v~~~~G~sVtl~c~~~-~p~~~v~W~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~sL~I~~l~~~DsG~Y~c~~~n   81 (93)
T d1ccza1           4 QIYGVVYGNVTFHVPSN-VPLKEVLWKKQKDKVAELENS-EFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPN   81 (93)
T ss_dssp             EEEEETTCCEEECCCCS-SCCSCEEEEETTEEEEEEETT-EEEECGGGTTSEEECTTTCCEEECSCCGGGCEEEEEECTT
T ss_pred             EEEEEECCCEEEEecCC-CCCcEEEEEEeccccceeeec-ceeeCCCccceEEEcCCeeEEEEEecChhhCEEEEEEEEC
Confidence            35678999999999864 477899999876554321111 1111111000     0124699999999999999999988


Q ss_pred             CCCceEEEE
Q psy4613          85 SLGEVESSI   93 (96)
Q Consensus        85 ~~g~~~~~~   93 (96)
                      ..+......
T Consensus        82 ~~~t~~~~l   90 (93)
T d1ccza1          82 ITDTMKFFL   90 (93)
T ss_dssp             CCSCEEEEE
T ss_pred             CCcEEEEEE
Confidence            877665443

>d1a0ql1 b.1.1.1 (L:2-108) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=99.15  E-value=6.7e-10  Score=50.35  Aligned_cols=76  Identities=16%  Similarity=0.330  Sum_probs=52.4

Q ss_pred             EEecCceeeecCCCcEEEEEEeeecccceeEEeecc--c--eeEec---------ccceEEEEeccccceEEEEEEEccC
Q psy4613           4 IHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQ--G--DMVIS---------SERYEVESISRSIFDFKMRLTIKKI   70 (96)
Q Consensus         4 ~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~--~--~~~~~---------~~~~~~~~~~~~~~~~~~~l~i~~~   70 (96)
                      +...+..+.+.+|++++|.|.........+.|++..  .  .+...         ..++.....     .....|.|.++
T Consensus         3 ltQsP~~l~~~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~s-----~~~~~L~I~~~   77 (106)
T d1a0ql1           3 LTQSPSSLSASLGGKVTITCKASQDIKKYIGWYQHKPGKQPRLLIHYTSTLLPGIPSRFRGSGS-----GRDYSFSISNL   77 (106)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEE-----TTEEEEEECSC
T ss_pred             eECcCCEEEECCCCCEEEEEEcCCCCCCCeEEEECCCCCcEEEEEEccccccCCCCcceEeecC-----CCEeeeEehhh
Confidence            566777888999999999998766556679999742  1  11110         122222211     12467999999


Q ss_pred             CCCCCeeEEEEEec
Q psy4613          71 TKYDLGSYKCIAKN   84 (96)
Q Consensus        71 ~~~d~g~y~c~~~~   84 (96)
                      +.+|++.|.|..+.
T Consensus        78 ~~~DsA~YyCa~~~   91 (106)
T d1a0ql1          78 EPEDIATYYCLQYY   91 (106)
T ss_dssp             CGGGCSEEEEEECS
T ss_pred             cccCCEeEEEEEeC
Confidence            99999999998765

>d2bnqd1 b.1.1.1 (D:2-114) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=99.14  E-value=1.8e-09  Score=49.39  Aligned_cols=80  Identities=15%  Similarity=0.208  Sum_probs=54.1

Q ss_pred             EEecCceeeecCCCcEEEEEEeeecccceeEEeecc--c--eeEe---------cccceEEEEeccccceEEEEEEEccC
Q psy4613           4 IHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQ--G--DMVI---------SSERYEVESISRSIFDFKMRLTIKKI   70 (96)
Q Consensus         4 ~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~--~--~~~~---------~~~~~~~~~~~~~~~~~~~~l~i~~~   70 (96)
                      +...+..+.+..|+++.|.|.........+.|++..  .  ....         ...+.......   ......|.|.++
T Consensus         3 V~Q~P~~v~v~~G~sv~L~C~~s~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~L~i~~~   79 (113)
T d2bnqd1           3 VTQIPAALSVPEGENLVLNCSFTDSAIYNLQWFRQDPGKGLTSLLLIQSSQREQTSGRLNASLDK---SSGRSTLYIAAS   79 (113)
T ss_dssp             EECSSSEEEEETTCCEEEEEEESCCCEEEEEEEEECTTSCEEEEEEEETTCCEEEETTEEEEEET---TTTEEEEEESSC
T ss_pred             cEeeCCEEEEcCCCCEEEEEEEecCcccCCeEEEeccccccceeeeeccceecccccceeeeecc---CCCEEEeeeecC
Confidence            566777888999999999999877666688999742  1  1111         01122221111   113467999999


Q ss_pred             CCCCCeeEEEEEecCC
Q psy4613          71 TKYDLGSYKCIAKNSL   86 (96)
Q Consensus        71 ~~~d~g~y~c~~~~~~   86 (96)
                      +.+|+|.|.|..+...
T Consensus        80 ~~~Dsg~YyCa~~~~~   95 (113)
T d2bnqd1          80 QPGDSATYLCAVRPTS   95 (113)
T ss_dssp             CGGGCEEEEEEEEESS
T ss_pred             CCCCCcEEeEeEecCC
Confidence            9999999999987543

>d2cdea1 b.1.1.1 (A:2-115) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=99.14  E-value=7.1e-10  Score=50.87  Aligned_cols=79  Identities=22%  Similarity=0.263  Sum_probs=54.3

Q ss_pred             EEecCceeeecCCCcEEEEEEeeecccceeEEeeccc----eeE-e--------cccceEEEEeccccceEEEEEEEccC
Q psy4613           4 IHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQG----DMV-I--------SSERYEVESISRSIFDFKMRLTIKKI   70 (96)
Q Consensus         4 ~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~----~~~-~--------~~~~~~~~~~~~~~~~~~~~l~i~~~   70 (96)
                      +...|..+.+..|++++|.|.........+.|++...    ..+ .        ...++....   ........|.|.++
T Consensus         3 V~Q~P~~~~~~~G~~vtL~C~~~~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~sL~i~~~   79 (114)
T d2cdea1           3 VEQSPQSLIILEGKNCTLQCNYTVSPFSNLRWYKQDTGRGPVSLTIMTFSENTKSNGRYTATL---DADTKQSSLHITAS   79 (114)
T ss_dssp             EEEECSEEEEETTCCCEEEEEECCSCCSEEEEEEECTTSCCCEEEEECSSCSCEEETTEEECB---CSSSSEEEEEECSC
T ss_pred             cEeeCCEEEEeCCCCEEEEEEEcCCCccCceEEEecCCCceEEeeeeeeeecccccCccceee---cCcccccccEEccc
Confidence            5667778889999999999998776667899997431    111 1        011222111   11113578999999


Q ss_pred             CCCCCeeEEEEEecC
Q psy4613          71 TKYDLGSYKCIAKNS   85 (96)
Q Consensus        71 ~~~d~g~y~c~~~~~   85 (96)
                      +..|+|.|.|.++..
T Consensus        80 ~~~Dsg~Y~Ca~~~~   94 (114)
T d2cdea1          80 QLSDSASYICVVSDR   94 (114)
T ss_dssp             CGGGCSEEEEEEECS
T ss_pred             ChhhCcccceeeecC
Confidence            999999999998864

>d1j1pl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=99.14  E-value=7.5e-10  Score=50.27  Aligned_cols=77  Identities=18%  Similarity=0.344  Sum_probs=53.1

Q ss_pred             EEecCceeeecCCCcEEEEEEeeecccceeEEeeccc--e--eEe---------cccceEEEEeccccceEEEEEEEccC
Q psy4613           4 IHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQG--D--MVI---------SSERYEVESISRSIFDFKMRLTIKKI   70 (96)
Q Consensus         4 ~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~--~--~~~---------~~~~~~~~~~~~~~~~~~~~l~i~~~   70 (96)
                      +...+..+.+.+|++++|.|.........+.|++...  .  +..         ...++......     ....|.|.++
T Consensus         4 ~tQ~p~~l~v~~G~~vtL~C~~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~fs~~~~~-----~~~~L~I~~~   78 (107)
T d1j1pl_           4 LTQSPATLSVTPGNSVSLSCRASQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSG-----TDFTLSINSV   78 (107)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEET-----TEEEEEESSC
T ss_pred             EECcCCeEEECCCCCEEEEEEecCCCCcceEEEEeCCCCccEEeeecccCCCceeCCcceecccC-----CEEEEEEccc
Confidence            4567778889999999999987665666799997431  1  111         01222222111     3467999999


Q ss_pred             CCCCCeeEEEEEecC
Q psy4613          71 TKYDLGSYKCIAKNS   85 (96)
Q Consensus        71 ~~~d~g~y~c~~~~~   85 (96)
                      +.+|+|.|.|..+..
T Consensus        79 ~~~Dsa~YyCa~~~~   93 (107)
T d1j1pl_          79 ETEDFGMYFCQQANS   93 (107)
T ss_dssp             CGGGCEEEEEEECSS
T ss_pred             CcCCCEEEEEEcCCC
Confidence            999999999987654

>d1i8ka_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=99.13  E-value=9.5e-10  Score=49.84  Aligned_cols=77  Identities=16%  Similarity=0.334  Sum_probs=52.2

Q ss_pred             EEecCceeeecCCCcEEEEEEeeecccceeEEeecc--ce--eEe---------cccceEEEEeccccceEEEEEEEccC
Q psy4613           4 IHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQ--GD--MVI---------SSERYEVESISRSIFDFKMRLTIKKI   70 (96)
Q Consensus         4 ~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~--~~--~~~---------~~~~~~~~~~~~~~~~~~~~l~i~~~   70 (96)
                      +...|..+.+.+|++++|.|.........+.|++..  ..  +..         ...++.....     .....|.|.++
T Consensus         4 ltQsP~slsv~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~rfs~~~~-----~~~~~L~I~~~   78 (106)
T d1i8ka_           4 LTQSPASLSVATGEKVTIRCMTSTDIDDDMNWYQQKPGEPPKFLISEGNTLRPGVPSRFSSSGT-----GTDFVFTIENT   78 (106)
T ss_dssp             EEEECSEEECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEE-----TTEEEEEESSC
T ss_pred             EEeeCCEEEECCCCCEEEEEEeCCCCCccEEEEeCCCCCceEEEEeccCccccCCCcceeEeCC-----CCeeeecccCC
Confidence            456677888999999999998766555678998642  11  111         1122222111     12467999999


Q ss_pred             CCCCCeeEEEEEecC
Q psy4613          71 TKYDLGSYKCIAKNS   85 (96)
Q Consensus        71 ~~~d~g~y~c~~~~~   85 (96)
                      +.+|+|.|.|..+..
T Consensus        79 ~~~Dsa~YyCa~~~~   93 (106)
T d1i8ka_          79 LSEDVGDYYCLQSFN   93 (106)
T ss_dssp             CGGGCEEEEEEECSS
T ss_pred             ccccCEEEeEecCcc
Confidence            999999999987654

>d1c5cl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=99.13  E-value=8.5e-10  Score=50.08  Aligned_cols=77  Identities=19%  Similarity=0.370  Sum_probs=52.5

Q ss_pred             EEecCceeeecCCCcEEEEEEeeecccceeEEeecc--ce--eEec---------ccceEEEEeccccceEEEEEEEccC
Q psy4613           4 IHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQ--GD--MVIS---------SERYEVESISRSIFDFKMRLTIKKI   70 (96)
Q Consensus         4 ~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~--~~--~~~~---------~~~~~~~~~~~~~~~~~~~l~i~~~   70 (96)
                      +...|..+.+.+|++++|.|.........+.|++..  ..  +...         ..+.......     ....|.|.++
T Consensus         4 ltQ~P~s~~~~~G~svtl~C~~s~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~L~I~~l   78 (107)
T d1c5cl1           4 LTQSPSSLSASLGERVSLTCRTSQEISGYLSWLQQKPDGTIKRLIYDATKLDSGAPKRFSGSRSG-----SDYSLTISSL   78 (107)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTSCTTEEEEEET-----TEEEEEESSC
T ss_pred             EEccCCEEEECCCCCEEEEEEeCCCCCCCEEEEEcCCCCcceeEEeccccccCCCCCceEecccC-----CEEEEEEhhh
Confidence            456677788999999999999776666678999742  11  1111         1122221110     2467999999


Q ss_pred             CCCCCeeEEEEEecC
Q psy4613          71 TKYDLGSYKCIAKNS   85 (96)
Q Consensus        71 ~~~d~g~y~c~~~~~   85 (96)
                      +.+|++.|.|..+..
T Consensus        79 ~~~Dsa~YyCa~~~~   93 (107)
T d1c5cl1          79 ESEDFADYYCLQYAS   93 (107)
T ss_dssp             CGGGCSEEEEEECSS
T ss_pred             cccCCeEEEEecCcC
Confidence            999999999987754

>d1kcvl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=99.13  E-value=1.4e-09  Score=49.32  Aligned_cols=77  Identities=19%  Similarity=0.336  Sum_probs=52.9

Q ss_pred             EEecCceeeecCCCcEEEEEEeeecccceeEEeecc--c--eeEe---------cccceEEEEeccccceEEEEEEEccC
Q psy4613           4 IHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQ--G--DMVI---------SSERYEVESISRSIFDFKMRLTIKKI   70 (96)
Q Consensus         4 ~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~--~--~~~~---------~~~~~~~~~~~~~~~~~~~~l~i~~~   70 (96)
                      +...|..+.+.+|++++|.|.........+.|++..  .  ..+.         ...++.....     .....|.|.++
T Consensus         4 ~tQsP~~l~v~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~L~I~~l   78 (107)
T d1kcvl1           4 MTQSPKSMGMSVGEAVTLNCKASENVGTYVSWYQQKPGQSPVLLIYGASNRYTGVPDRFTGSGS-----ATDFTLTISSV   78 (107)
T ss_dssp             EEESCSEEEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEE-----TTEEEEEESSC
T ss_pred             EECcCCEEeECCCCCEEEEEEecCCcCCceEEEEcccCCCCEEEEEecccccCCccceEEeecc-----CCeeecEEHhh
Confidence            456778888999999999999876666679999742  1  1111         0122222111     13467999999


Q ss_pred             CCCCCeeEEEEEecC
Q psy4613          71 TKYDLGSYKCIAKNS   85 (96)
Q Consensus        71 ~~~d~g~y~c~~~~~   85 (96)
                      +.+|++.|.|.....
T Consensus        79 ~~~DSa~YyCa~~~~   93 (107)
T d1kcvl1          79 QADDDADYYCGQSYS   93 (107)
T ss_dssp             CGGGCEEEEEEECSS
T ss_pred             eecCCceEEEEecCC
Confidence            999999999987643

>d1vesa_ b.1.1.1 (A:) Novel antigen receptor 12Y-2 {Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor 12Y-2
species: Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]

Probab=99.12  E-value=4.5e-09  Score=48.09  Aligned_cols=79  Identities=19%  Similarity=0.262  Sum_probs=54.1

Q ss_pred             eEEecCceeeecCCCcEEEEEEeeecc--cceeEEeeccc----ee-EecccceEEEEeccccceEEEEEEEccCCCCCC
Q psy4613           3 VIHVPNQLVGAPIDTDVTLECYVEAYP--KSINYWVRDQG----DM-VISSERYEVESISRSIFDFKMRLTIKKITKYDL   75 (96)
Q Consensus         3 ~~~~~~~~~~~~~g~~~~l~c~~~~~~--~~~~~w~~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~   75 (96)
                      .+...|..+.+..|+++.|.|...+..  ...+.|++...    .. +....++........   ....|.|.+++.+|+
T Consensus         2 ~V~Q~P~s~~~~~G~svtL~C~~s~~~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~---~~~~L~I~~l~~~Ds   78 (113)
T d1vesa_           2 WVDQTPRTATKETGESLTINCVLRDASFELKDTGWYRTKLGSTNEQSISIGGRYVETVNKGS---KSFSLRISDLRVEDS   78 (113)
T ss_dssp             EEEEECSEEEECTTCCEEEEEEEESCSSCCCEEEEEEEETTCCCCEECCCBTTEEEEEETTT---TEEEEEECSCCGGGC
T ss_pred             ceEeeCCEEEEcCCCCEEEEEEECCCcccCCccceeeeeccccceeeeeecccccceeECCC---CceeeeecccccCCc
Confidence            456778888899999999999987543  35688987421    11 122344443332211   235799999999999


Q ss_pred             eeEEEEEec
Q psy4613          76 GSYKCIAKN   84 (96)
Q Consensus        76 g~y~c~~~~   84 (96)
                      |.|.|.+..
T Consensus        79 a~YyCa~~~   87 (113)
T d1vesa_          79 GTYKCQAFY   87 (113)
T ss_dssp             EEEEEEEEE
T ss_pred             ceEeeeeec
Confidence            999999854

>d1tjgl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=99.11  E-value=1.1e-09  Score=49.71  Aligned_cols=78  Identities=18%  Similarity=0.328  Sum_probs=53.9

Q ss_pred             eEEecCceeeecCCCcEEEEEEeeecccceeEEeeccc----eeEec---------ccceEEEEeccccceEEEEEEEcc
Q psy4613           3 VIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQG----DMVIS---------SERYEVESISRSIFDFKMRLTIKK   69 (96)
Q Consensus         3 ~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~----~~~~~---------~~~~~~~~~~~~~~~~~~~l~i~~   69 (96)
                      .+...|..+.+.+|++++|.|.........+.|++...    ..+..         ..++.....     .....|.|.+
T Consensus         3 ~~tQ~P~sl~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~L~I~~   77 (107)
T d1tjgl1           3 QLTQSPSSLSASVGDRITITCRASQGVTSALAWYRQKPGSPPQLLIYDASSLESGVPSRFSGSGS-----GTEFTLTIST   77 (107)
T ss_dssp             CEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEE-----TTEEEEEESS
T ss_pred             cEEeeCCEEEECCCCCEEEEEEECCCCCccEEEEeccCCccceEEEeecccccCCCCcceEEecc-----CCEEEEEecc
Confidence            46677788889999999999998765667889987421    11110         112222111     1246799999


Q ss_pred             CCCCCCeeEEEEEecC
Q psy4613          70 ITKYDLGSYKCIAKNS   85 (96)
Q Consensus        70 ~~~~d~g~y~c~~~~~   85 (96)
                      ++.+|++.|.|..+..
T Consensus        78 l~~~DsA~YyCa~~~~   93 (107)
T d1tjgl1          78 LRPEDFATYYCQQLHF   93 (107)
T ss_dssp             CCGGGCSEEEEEECSB
T ss_pred             ceeCcCceEEEEECcC
Confidence            9999999999987653

>d1lp9e1 b.1.1.1 (E:0-117) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=99.09  E-value=1.2e-09  Score=50.22  Aligned_cols=80  Identities=13%  Similarity=0.197  Sum_probs=53.8

Q ss_pred             EEecCceeeecCCCcEEEEEEeeecccceeEEeecc----ceeEec---------ccceEEEEeccccceEEEEEEEccC
Q psy4613           4 IHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQ----GDMVIS---------SERYEVESISRSIFDFKMRLTIKKI   70 (96)
Q Consensus         4 ~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~----~~~~~~---------~~~~~~~~~~~~~~~~~~~l~i~~~   70 (96)
                      +..++..+.+..|++++|.|.........+.|++..    .+++..         ..++.+.....   .....|.|.++
T Consensus         4 V~Q~~~~v~v~~G~~vtL~C~~~~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~L~I~~~   80 (115)
T d1lp9e1           4 VTQTEGLVTLTEGLPVMLNCTYQSTYSPFLFWYVQHLNEAPKLLLKSFTDNKRPEHQGFHATLHKS---SSSFHLQKSSA   80 (115)
T ss_dssp             EEECCSEEEEETTSCEEECEEEECSSSCCEEEEEECTTSCCEEEEESCSSTTCCCCSSCEECCBGG---GTBCCEEESSC
T ss_pred             EEcCCCeEEECCCCCEEEEEEEeCCCcCCeeEEEeCCCCceeeeeeeeeccCCcceeeeeeeccCC---CCeEEeecccc
Confidence            566778888999999999999887777789998742    111110         11222211110   01345999999


Q ss_pred             CCCCCeeEEEEEecCC
Q psy4613          71 TKYDLGSYKCIAKNSL   86 (96)
Q Consensus        71 ~~~d~g~y~c~~~~~~   86 (96)
                      +.+|+|.|.|.++...
T Consensus        81 ~~~Dsg~YyCa~~~~~   96 (115)
T d1lp9e1          81 QLSDSALYYCALFLAS   96 (115)
T ss_dssp             CGGGCEEEEEEEEECS
T ss_pred             ccccCccceEEEEcCC
Confidence            9999999999886543

>d1d5il1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=99.08  E-value=2.4e-09  Score=48.59  Aligned_cols=78  Identities=19%  Similarity=0.324  Sum_probs=52.9

Q ss_pred             eEEecCceeeecCCCcEEEEEEeeecccceeEEeecc--c--eeEec---------ccceEEEEeccccceEEEEEEEcc
Q psy4613           3 VIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQ--G--DMVIS---------SERYEVESISRSIFDFKMRLTIKK   69 (96)
Q Consensus         3 ~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~--~--~~~~~---------~~~~~~~~~~~~~~~~~~~l~i~~   69 (96)
                      .+...+..+.+.+|++++|.|.........+.|++..  .  ..+..         ..++......     ....|.|.+
T Consensus         3 ~~tQ~P~sl~~~~G~svtl~C~~s~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~rf~~~~~~-----~~~~L~I~~   77 (107)
T d1d5il1           3 KMTQSPSSMYASLGERVTITCKASQDINSYLSWFQQKPGKSPKTLIYRANRLVDGVPSRFSGSGSG-----QDYSLTISS   77 (107)
T ss_dssp             CEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEET-----TEEEEEESS
T ss_pred             CEEeeCCEEEECCCCCEEEEEEcCCCCCCccceeEeccccCeEEEEEeccccccCcCCceeecccC-----CEEEccccc
Confidence            3556677788999999999998766556678898742  1  11110         1223222111     236799999


Q ss_pred             CCCCCCeeEEEEEecC
Q psy4613          70 ITKYDLGSYKCIAKNS   85 (96)
Q Consensus        70 ~~~~d~g~y~c~~~~~   85 (96)
                      ++.+|++.|.|..+..
T Consensus        78 ~~~~Dsa~YyCa~~~~   93 (107)
T d1d5il1          78 LEYEDMGIYYCLQYDE   93 (107)
T ss_dssp             CCGGGCEEEEEEECSS
T ss_pred             cCCcCCEEEEeeeccC
Confidence            9999999999987654

>d1sq2n_ b.1.1.1 (N:) Novel antigen receptor (against lysozyme) {Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor (against lysozyme)
species: Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]

Probab=99.08  E-value=6.4e-09  Score=47.49  Aligned_cols=79  Identities=20%  Similarity=0.331  Sum_probs=53.1

Q ss_pred             EEecCceeeecCCCcEEEEEEeeec--ccceeEEeecc----ce-eEecccceEEEEeccccceEEEEEEEccCCCCCCe
Q psy4613           4 IHVPNQLVGAPIDTDVTLECYVEAY--PKSINYWVRDQ----GD-MVISSERYEVESISRSIFDFKMRLTIKKITKYDLG   76 (96)
Q Consensus         4 ~~~~~~~~~~~~g~~~~l~c~~~~~--~~~~~~w~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g   76 (96)
                      +...|..+.+..|++++|.|...+.  ....+.|++..    .. +.....++........   ....|.|.+++.+|+|
T Consensus         2 V~Q~P~s~t~~~G~svtl~C~~s~~s~~~~~i~WYrq~~g~~~~~~~~~~gr~~~~~~~~~---~~~~L~I~~l~~~Dsa   78 (112)
T d1sq2n_           2 VDQTPRSVTKETGESLTINCVLRDASYALGSTCWYRKKSGEGNEESISKGGRYVETVNSGS---KSFSLRINDLTVEDGG   78 (112)
T ss_dssp             EEEECSEEEECTTCCEEEEEEECSCSSCCCCEEEEEEETTSCCCEECCCBTTEEEEEETTT---TEEEEEECSCCGGGCE
T ss_pred             CEecCCEEEEcCCCCEEEEEEECCCcccCCceEEEEeeccceeeeeeccCCcEeeEEecCC---ceeeeEecCCcCccCE
Confidence            4566778889999999999987543  34678999742    11 1112233333222111   2367999999999999


Q ss_pred             eEEEEEecC
Q psy4613          77 SYKCIAKNS   85 (96)
Q Consensus        77 ~y~c~~~~~   85 (96)
                      .|.|.++..
T Consensus        79 ~YyCA~~~~   87 (112)
T d1sq2n_          79 TYRCGLGVA   87 (112)
T ss_dssp             EEEEEECBT
T ss_pred             EEeEEEecC
Confidence            999988754

>d1u3ha1 b.1.1.1 (A:2-116) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=99.07  E-value=2.8e-09  Score=48.51  Aligned_cols=78  Identities=18%  Similarity=0.213  Sum_probs=51.6

Q ss_pred             EEecCceeeecCCCcEEEEEEeeecccceeEEeecc--c--eeEe---------cccceEEEEeccccceEEEEEEEccC
Q psy4613           4 IHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQ--G--DMVI---------SSERYEVESISRSIFDFKMRLTIKKI   70 (96)
Q Consensus         4 ~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~--~--~~~~---------~~~~~~~~~~~~~~~~~~~~l~i~~~   70 (96)
                      +...+..+.+..|++++|.|.........+.|++..  .  ....         ...+.......   ......|.|.++
T Consensus         2 V~Q~P~~~~~~~G~~vtl~C~~~~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~L~I~~~   78 (110)
T d1u3ha1           2 VRQSPQSLTVWEGETAILNCSYENSAFDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNK---REKKLSLHIADS   78 (110)
T ss_dssp             EECSCSSEEEETTSCEEEEEEECCTTEEEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEET---GGGEEEEEESSC
T ss_pred             cEecCCEEEEcCCCCEEEEEEecCCCCcEEEEEeeccccceeeeeeeccccccccccceeEEECC---CCCeeEeEeccC
Confidence            455666777899999999999876566679999742  1  1111         01111111111   113467999999


Q ss_pred             CCCCCeeEEEEEec
Q psy4613          71 TKYDLGSYKCIAKN   84 (96)
Q Consensus        71 ~~~d~g~y~c~~~~   84 (96)
                      +.+|+|.|.|..+.
T Consensus        79 ~~~Dsa~YyCa~~~   92 (110)
T d1u3ha1          79 QPGDSATYFCAASA   92 (110)
T ss_dssp             CTTSCSEEEECCEE
T ss_pred             CCCCceeEeeeecC
Confidence            99999999998763

>d1mexl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=99.07  E-value=2.3e-09  Score=48.62  Aligned_cols=78  Identities=19%  Similarity=0.386  Sum_probs=52.9

Q ss_pred             eEEecCceeeecCCCcEEEEEEeeecccceeEEeecc--c--eeEec---------ccceEEEEeccccceEEEEEEEcc
Q psy4613           3 VIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQ--G--DMVIS---------SERYEVESISRSIFDFKMRLTIKK   69 (96)
Q Consensus         3 ~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~--~--~~~~~---------~~~~~~~~~~~~~~~~~~~l~i~~   69 (96)
                      .+..++..+.+..|++++|.|.........+.|++..  .  ..+..         ..++......     ....|.|.+
T Consensus         3 ~ltQ~p~~l~~~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~rfs~~~~~-----~~~~L~I~~   77 (107)
T d1mexl1           3 VMTQSQKFMSTSLGNRVSVTCKASQNVGTNVAWFQQKPGQSPKTLIYSASYRYSGVPDRFTGSGSG-----TDFTLTINN   77 (107)
T ss_dssp             CEECCCSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEET-----TEEEEEESS
T ss_pred             cEEcCCCeEEECCCCCEEEEEEeCCCCCCceEEEeccCCcccEEEEEeccccccccCCCeeecCCC-----Ceeeeeech
Confidence            3567778888999999999998765555678999742  1  11110         1222222111     236799999


Q ss_pred             CCCCCCeeEEEEEecC
Q psy4613          70 ITKYDLGSYKCIAKNS   85 (96)
Q Consensus        70 ~~~~d~g~y~c~~~~~   85 (96)
                      ++.+|++.|.|..+..
T Consensus        78 ~~~~DsA~YyCa~~~~   93 (107)
T d1mexl1          78 VQSEDLAEYFCQQYNS   93 (107)
T ss_dssp             CCGGGCSEEEEEECSS
T ss_pred             hheecceeEEEeECCC
Confidence            9999999999987653

>d3bp5a1 b.1.1.1 (A:1-114) Programmed cell death protein 1, PD1, extracellular domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Programmed cell death protein 1, PD1, extracellular domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.06  E-value=1.2e-08  Score=46.70  Aligned_cols=79  Identities=14%  Similarity=0.288  Sum_probs=52.0

Q ss_pred             EEecCceeeecCCCcEEEEEEeeec-ccceeEEeecc--c--eeE-e---------cccceEEEEeccccceEEEEEEEc
Q psy4613           4 IHVPNQLVGAPIDTDVTLECYVEAY-PKSINYWVRDQ--G--DMV-I---------SSERYEVESISRSIFDFKMRLTIK   68 (96)
Q Consensus         4 ~~~~~~~~~~~~g~~~~l~c~~~~~-~~~~~~w~~~~--~--~~~-~---------~~~~~~~~~~~~~~~~~~~~l~i~   68 (96)
                      +...|..+.+..|+++.|.|.+... ....+.|++..  .  ..+ .         ...++.+....   ......|.|.
T Consensus         2 vtqsP~~l~v~~G~~vtl~C~~~~~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~~~rf~~~~~~---~~~~~~L~I~   78 (114)
T d3bp5a1           2 LTFYPAWLTVSEGANATFTCSLSNWSEDLMLNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQIIQLP---NRHDFHMNIL   78 (114)
T ss_dssp             EEEESSEEEEETTCCEEEEEEESCCCTTCEEEEEEECTTCCEEEEEEEETTEEEESSCTTEEEEECT---TSSEEEEEES
T ss_pred             ceECCCeEEECCCCCEEEEEEECCCCCcceEEEEEECCCCCCeeeEEeeeccccccccCcceEEEeC---CCCEEEEEEC
Confidence            4567788889999999999997653 34468898742  1  111 1         01122222211   1123569999


Q ss_pred             cCCCCCCeeEEEEEecC
Q psy4613          69 KITKYDLGSYKCIAKNS   85 (96)
Q Consensus        69 ~~~~~d~g~y~c~~~~~   85 (96)
                      +++..|+|.|.|.+...
T Consensus        79 ~~~~~Dsg~YyCa~~~~   95 (114)
T d3bp5a1          79 DTRRNDSGIYLCGAISL   95 (114)
T ss_dssp             SCCGGGCEEEEEEEECS
T ss_pred             ccCcCCCeEEEEEEEeC
Confidence            99999999999988754

>d1jhll_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=99.06  E-value=4.1e-09  Score=47.85  Aligned_cols=78  Identities=17%  Similarity=0.298  Sum_probs=52.7

Q ss_pred             eEEecCceeeecCCCcEEEEEEeeecccceeEEeecc--ce--eE-ec--------ccceEEEEeccccceEEEEEEEcc
Q psy4613           3 VIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQ--GD--MV-IS--------SERYEVESISRSIFDFKMRLTIKK   69 (96)
Q Consensus         3 ~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~--~~--~~-~~--------~~~~~~~~~~~~~~~~~~~l~i~~   69 (96)
                      .+...|..+.+..|+++.|.|.........+.|++..  ..  .. ..        ........     ......|.|.+
T Consensus         3 ~vtQ~P~~l~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~-----~~~~~~L~i~~   77 (108)
T d1jhll_           3 ELTQSPSYLVASPGETITINCRASKSISKSLAWYQEKPGKTNNLLIYSGSTLQSGIPSRFSGSG-----SGTDFTLTISS   77 (108)
T ss_dssp             CEEEECSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE-----SSSEEEEEECS
T ss_pred             cEEccCCeEEecCCCCEEEEEEccCCcCCceEEEEccccCCCeEEEEeeccccCCccccccccC-----CCCEEEeEeee
Confidence            3556778888999999999999776556679998742  11  11 10        01111111     11346799999


Q ss_pred             CCCCCCeeEEEEEecC
Q psy4613          70 ITKYDLGSYKCIAKNS   85 (96)
Q Consensus        70 ~~~~d~g~y~c~~~~~   85 (96)
                      ++.+|++.|.|..+..
T Consensus        78 l~~~Dsa~YyCA~~~~   93 (108)
T d1jhll_          78 LEPEDFAMYICQQHNE   93 (108)
T ss_dssp             CCTTCCSEEEEEECSS
T ss_pred             eEeccceEEEEeeCCC
Confidence            9999999999987654

>d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Coxsackie virus and adenovirus receptor (Car), domain 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.05  E-value=3.9e-10  Score=52.18  Aligned_cols=91  Identities=19%  Similarity=0.370  Sum_probs=55.1

Q ss_pred             eEEecCceeeecCCCcEEEEEEeeeccc----ceeEEeecccee-------Eec-------------ccceEEEEecccc
Q psy4613           3 VIHVPNQLVGAPIDTDVTLECYVEAYPK----SINYWVRDQGDM-------VIS-------------SERYEVESISRSI   58 (96)
Q Consensus         3 ~~~~~~~~~~~~~g~~~~l~c~~~~~~~----~~~~w~~~~~~~-------~~~-------------~~~~~~~~~~~~~   58 (96)
                      .+..|...+.+..|+++.|.|.+...+.    ..+.|++.....       ...             ..+.....  ...
T Consensus         6 ~Vt~p~~~v~~~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~--~~~   83 (124)
T d1eaja_           6 SITTPEEMIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPDLKGRVHFTS--NDL   83 (124)
T ss_dssp             EESSSEEEEEEETTSCEEECCBEECCTTCCSCEEEEEEEEETTSSCCSEEEEEEETTEEECTTSSTTTTTEEECC--SCG
T ss_pred             EEEccCceEEEECCCcEEEeEEEecccCCCCcEEEEEEEeCCCCcceeEEEEEEeCCccccccCcccccceEEEc--cCC
Confidence            3445556678899999999999865432    257887632110       000             00111100  000


Q ss_pred             ceEEEEEEEccCCCCCCeeEEEEEecCCCceEEEEEe
Q psy4613          59 FDFKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL   95 (96)
Q Consensus        59 ~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~~~~~~l   95 (96)
                      ......|.|.+++..|.|.|.|.+.+..+.....+.|
T Consensus        84 ~~~~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~L  120 (124)
T d1eaja_          84 KSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKIHL  120 (124)
T ss_dssp             GGTBCCEEECSCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred             CCCEEEEEEcccEEccCEEEEEEEEECCCeEEeEEEE
Confidence            0012468999999999999999999887765555443

>d1tvda_ b.1.1.1 (A:) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=99.05  E-value=1.7e-08  Score=46.28  Aligned_cols=81  Identities=17%  Similarity=0.279  Sum_probs=53.0

Q ss_pred             eEEecCceeeecCCCcEEEEEEeeec-ccceeEEeec--cc--eeEe------------cccceEEEEeccccceEEEEE
Q psy4613           3 VIHVPNQLVGAPIDTDVTLECYVEAY-PKSINYWVRD--QG--DMVI------------SSERYEVESISRSIFDFKMRL   65 (96)
Q Consensus         3 ~~~~~~~~~~~~~g~~~~l~c~~~~~-~~~~~~w~~~--~~--~~~~------------~~~~~~~~~~~~~~~~~~~~l   65 (96)
                      .+...+..+.+..|++++|.|..... ....+.|++.  +.  ..+.            ...++.+......   ....|
T Consensus         2 ~VtQ~p~~~~~~~G~~vtL~C~~~~~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~rf~~~~~~~~---~~~~L   78 (116)
T d1tvda_           2 KVTQSSPDQTVASGSEVVLLCTYDTVYSNPDLFWYRIRPDYSFQFVFYGDDSRSEGADFTQGRFSVKHILTQ---KAFHL   78 (116)
T ss_dssp             EEECCSCCEEEETTCCEEECCEEECCSSSCCEEEEEECTTSCEEEEEEECSSCEEECGGGTTTEEEEEEGGG---TEEEE
T ss_pred             CEEccCCCEEEcCCCCEEEEEEEcCCccCCcEEEEEeCCCCceEEeeecccccccccCccceEEEEEecCce---eEEee
Confidence            35566777889999999999987653 4557889863  11  1111            0123332221111   23579


Q ss_pred             EEccCCCCCCeeEEEEEecCC
Q psy4613          66 TIKKITKYDLGSYKCIAKNSL   86 (96)
Q Consensus        66 ~i~~~~~~d~g~y~c~~~~~~   86 (96)
                      .|.+++..|+|.|.|......
T Consensus        79 ~I~~~~~~Dsg~YyCa~~~~~   99 (116)
T d1tvda_          79 VISPVRTEDSATYYCAFTLPP   99 (116)
T ss_dssp             EESSCCGGGCEEEEEEEECTT
T ss_pred             eecCccccccccceeeEecCC
Confidence            999999999999999987543

>d1ospl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=99.05  E-value=1.5e-09  Score=49.29  Aligned_cols=78  Identities=19%  Similarity=0.299  Sum_probs=53.1

Q ss_pred             eEEecCceeeecCCCcEEEEEEeeecccceeEEeeccc----eeEec---------ccceEEEEeccccceEEEEEEEcc
Q psy4613           3 VIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQG----DMVIS---------SERYEVESISRSIFDFKMRLTIKK   69 (96)
Q Consensus         3 ~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~----~~~~~---------~~~~~~~~~~~~~~~~~~~l~i~~   69 (96)
                      .+...+..+.+.+|++++|.|.........+.|++...    .++..         ..++....   .  .....|.|.+
T Consensus         3 ~~tQsP~~ltv~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~i~~~~~~~~~~~~~rfs~~~---~--~~~~~L~I~~   77 (107)
T d1ospl1           3 QMSQSSSSFSVSLGDRVTITCKASEDIYSRLAWYQQKPGNAPRLLISGATSLETWVPSRFSGSD---S--GKDYTLSITS   77 (107)
T ss_dssp             CEECCCSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEC---S--SSSEEEEESS
T ss_pred             CEEeeCCEEEECCCCCEEEEEecCCCcccccEEEEcCCCccceeEEeeccccCCccccccceec---C--CCeEEeEEcc
Confidence            35567778889999999999987765556799997421    11110         12232221   1  1236799999


Q ss_pred             CCCCCCeeEEEEEecC
Q psy4613          70 ITKYDLGSYKCIAKNS   85 (96)
Q Consensus        70 ~~~~d~g~y~c~~~~~   85 (96)
                      ++.+|++.|.|..+..
T Consensus        78 ~~~~Dsa~YyCa~~~~   93 (107)
T d1ospl1          78 LQTEDVATYFCQQYWS   93 (107)
T ss_dssp             CCGGGCSEEEEEECSS
T ss_pred             cccccCCcEEEeeccC
Confidence            9999999999987653

>d1lk3l1 b.1.1.1 (L:1-106) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.04  E-value=3.6e-09  Score=47.89  Aligned_cols=75  Identities=17%  Similarity=0.292  Sum_probs=50.6

Q ss_pred             EEecCceeeecCCCcEEEEEEeeecccceeEEeecc----ceeEec---------ccceEEEEeccccceEEEEEEEccC
Q psy4613           4 IHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQ----GDMVIS---------SERYEVESISRSIFDFKMRLTIKKI   70 (96)
Q Consensus         4 ~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~----~~~~~~---------~~~~~~~~~~~~~~~~~~~l~i~~~   70 (96)
                      +..|+ .+.+.+|++++|.|.........+.|++..    ...+..         ..++.....     .....|.|.++
T Consensus         4 ltQp~-s~~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~-----~~~~~L~I~~~   77 (106)
T d1lk3l1           4 LTQPP-ALTVSPGEKLTISCKASESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGS-----GTDFTLTIDPV   77 (106)
T ss_dssp             EECCS-EEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEE-----TTEEEEEESSC
T ss_pred             EeeCC-eEEECCCCCEEEEEEeCCCCCccEEEEecCCCCCcEEEEEecccccCCcCCceeeecC-----CCEEEeEECCc
Confidence            45665 678999999999999876566689999742    111110         112222211     12367999999


Q ss_pred             CCCCCeeEEEEEec
Q psy4613          71 TKYDLGSYKCIAKN   84 (96)
Q Consensus        71 ~~~d~g~y~c~~~~   84 (96)
                      +.+|++.|.|....
T Consensus        78 ~~~Dsa~YyCa~~~   91 (106)
T d1lk3l1          78 EADDTAIYFCQQSW   91 (106)
T ss_dssp             CGGGCEEEEEEECS
T ss_pred             ChhhCCCccccccc
Confidence            99999999997654

>d1op3k1 b.1.1.1 (K:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=99.03  E-value=4.2e-09  Score=47.69  Aligned_cols=76  Identities=16%  Similarity=0.337  Sum_probs=52.3

Q ss_pred             EEecCceeeecCCCcEEEEEEeeecccceeEEeecc----ceeEe---------cccceEEEEeccccceEEEEEEEccC
Q psy4613           4 IHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQ----GDMVI---------SSERYEVESISRSIFDFKMRLTIKKI   70 (96)
Q Consensus         4 ~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~----~~~~~---------~~~~~~~~~~~~~~~~~~~~l~i~~~   70 (96)
                      +.+.|..+.+.+|++++|.|.........+.|++..    .+++.         ..+++.....     .....|.|.++
T Consensus         3 ltQ~P~sl~~~~G~svtL~C~~~~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~f~~~~~-----~~~~~L~I~~~   77 (106)
T d1op3k1           3 MTQSPSTLSASVGDTITITCRASQSIETWLAWYQQKPGKAPKLLIYKASTLKTGVPSRFSGSGS-----GTEFTLTISGL   77 (106)
T ss_dssp             EEEECSEEEECTTCEEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEE-----TTEEEEEEESC
T ss_pred             EeCcCCeEEECCCCCEEEEEEeCCCCCCcEEEEecCCCCCCEEEEEccccCCCCcCCceeeecc-----CCEEEEEEccc
Confidence            446677888999999999998776556678998742    12221         0123322211     12467999999


Q ss_pred             CCCCCeeEEEEEec
Q psy4613          71 TKYDLGSYKCIAKN   84 (96)
Q Consensus        71 ~~~d~g~y~c~~~~   84 (96)
                      +.+|++.|.|..+.
T Consensus        78 ~~~Dsa~YyCa~~~   91 (106)
T d1op3k1          78 QFDDFATYHCQHYA   91 (106)
T ss_dssp             CGGGCSEEEEEEEC
T ss_pred             cccCCCcEeeeeCC
Confidence            99999999998765

>d1bd2d1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=99.03  E-value=1.1e-08  Score=46.60  Aligned_cols=78  Identities=15%  Similarity=0.145  Sum_probs=52.9

Q ss_pred             EEecCceeeecCCCcEEEEEEeeecccceeEEeecc----ceeEe---------cccceEEEEeccccceEEEEEEEccC
Q psy4613           4 IHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQ----GDMVI---------SSERYEVESISRSIFDFKMRLTIKKI   70 (96)
Q Consensus         4 ~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~----~~~~~---------~~~~~~~~~~~~~~~~~~~~l~i~~~   70 (96)
                      +...+..+.+.+|++++|.|.........+.|++..    ..++.         ...++.....   .......|.|.++
T Consensus         3 v~Q~p~s~~~~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~L~I~~~   79 (111)
T d1bd2d1           3 VKQNSPSLSVQEGRISILNCDYTNSMFDYFLWYKKYPAEGPTFLISISSIKDKNADGRFTVFLN---KSAKHLSLHIVPS   79 (111)
T ss_dssp             EECCCSEEEEETTSCEEEEEEECCTTCCEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEE---TTTTEEEEEESSC
T ss_pred             eEccCCEEEEcCCCCEEEEEEeCCCCCCeEEEEEECCCCcceeeeeeeceeccccCCcceEEEE---ccCCEEEEEECCC
Confidence            556677788899999999998776666678898742    11111         0112222111   1113578999999


Q ss_pred             CCCCCeeEEEEEec
Q psy4613          71 TKYDLGSYKCIAKN   84 (96)
Q Consensus        71 ~~~d~g~y~c~~~~   84 (96)
                      +..|+|.|.|..+.
T Consensus        80 ~~~Dsa~YyCa~~~   93 (111)
T d1bd2d1          80 QPGDSAVYFCAAME   93 (111)
T ss_dssp             CGGGCEEEEEEEES
T ss_pred             cccccEEEEeeccC
Confidence            99999999999875

>d2ij0c1 b.1.1.1 (C:1-117) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=99.02  E-value=7.4e-09  Score=47.69  Aligned_cols=79  Identities=19%  Similarity=0.270  Sum_probs=53.3

Q ss_pred             eEEecCceeeecCCCcEEEEEEeeecccceeEEeecc--c--eeEe---c-----------ccceEEEEeccccceEEEE
Q psy4613           3 VIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQ--G--DMVI---S-----------SERYEVESISRSIFDFKMR   64 (96)
Q Consensus         3 ~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~--~--~~~~---~-----------~~~~~~~~~~~~~~~~~~~   64 (96)
                      .+...+..+.+..|++++|.|.........+.|++..  .  .++.   .           ..++.....    ......
T Consensus         3 ~v~Q~P~~~~~~~G~~v~L~C~~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~f~~~~~----~~~~~~   78 (118)
T d2ij0c1           3 VVSQHPSMVIVKSGTSVKIECRSLDTNIHTMFWYRQFPKQSLMLMATSHQGFNAIYEQGVVKDKFLINHA----SPTLST   78 (118)
T ss_dssp             CEEEECSEEEECTTCCEEEEEEECSSCCSEEEEEEECTTSCEEEEEEEETTSCCEECTTCCTTTEEEEEC----SSSEEE
T ss_pred             cEEEcCCeEEEcCCCCEEEEEEEcCCcccEEEEEEEcccccceeeeeccccccceeccccccccceeecc----cccccc
Confidence            4566777788999999999999876666789999742  1  1110   0           111211110    012457


Q ss_pred             EEEccCCCCCCeeEEEEEecC
Q psy4613          65 LTIKKITKYDLGSYKCIAKNS   85 (96)
Q Consensus        65 l~i~~~~~~d~g~y~c~~~~~   85 (96)
                      |.|.+++.+|++.|.|.....
T Consensus        79 L~i~~~~~~Dsa~YyCa~~~~   99 (118)
T d2ij0c1          79 LTVTSAHPEDSGFYVCSALAG   99 (118)
T ss_dssp             EEECSCCGGGCEEEEEEEECS
T ss_pred             ccccccccccCceEEEEEecC
Confidence            999999999999999998753

>d8faba1 b.1.1.1 (A:3-105) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=99.02  E-value=1.6e-09  Score=48.84  Aligned_cols=75  Identities=24%  Similarity=0.438  Sum_probs=50.0

Q ss_pred             EecCceeeecCCCcEEEEEEeeecccceeEEeeccc----eeEec---------ccceEEEEeccccceEEEEEEEccCC
Q psy4613           5 HVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQG----DMVIS---------SERYEVESISRSIFDFKMRLTIKKIT   71 (96)
Q Consensus         5 ~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~----~~~~~---------~~~~~~~~~~~~~~~~~~~l~i~~~~   71 (96)
                      ..|+ .+.+.+|++++|.|.........+.|++...    .+...         ..+.......     ....|.|.+++
T Consensus         3 tQp~-sl~~~~G~svtl~C~~~~~~~~~~~WYrQ~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~L~I~~l~   76 (103)
T d8faba1           3 TQPP-SVSVSPGQTARITCSANALPNQYAYWYQQKPGRAPVMVIYKDTQRPSGIPQRFSSSTSG-----TTVTLTISGVQ   76 (103)
T ss_dssp             BCCS-EEEECTTSCEEEEEECTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEET-----TEEEEEETTCC
T ss_pred             CCCC-eEEECCCCCEEEEEEeCCCCCCCEEEEEccCCCceEEEeeeecccccccCCcEEECCCC-----CccCceEcCcc
Confidence            4555 6778999999999987665566789997421    11110         1122211111     24679999999


Q ss_pred             CCCCeeEEEEEecC
Q psy4613          72 KYDLGSYKCIAKNS   85 (96)
Q Consensus        72 ~~d~g~y~c~~~~~   85 (96)
                      .+|++.|.|..+..
T Consensus        77 ~~Dsa~YyCA~~~~   90 (103)
T d8faba1          77 AEDEADYYCQAWDN   90 (103)
T ss_dssp             GGGCEEEEEEEEET
T ss_pred             hhHCceEEeeecCC
Confidence            99999999987754

>d1bwwa_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=99.02  E-value=5.4e-09  Score=47.52  Aligned_cols=77  Identities=17%  Similarity=0.315  Sum_probs=52.3

Q ss_pred             EEecCceeeecCCCcEEEEEEeeecccceeEEeecc----ceeEec---------ccceEEEEeccccceEEEEEEEccC
Q psy4613           4 IHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQ----GDMVIS---------SERYEVESISRSIFDFKMRLTIKKI   70 (96)
Q Consensus         4 ~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~----~~~~~~---------~~~~~~~~~~~~~~~~~~~l~i~~~   70 (96)
                      +...|..+.+.+|+++.|.|...+.....+.|++..    ..++..         ..++.....     .....|.|.++
T Consensus         6 ltQsP~~l~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~fs~~~~-----~~~~~L~I~~l   80 (109)
T d1bwwa_           6 MTQSPSSLSASVGDRVTITCQASQDIIKYLNWYQQKPGKAPKLLIYEASNLQAGVPSRFSGSGS-----GTDYTFTISSL   80 (109)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEE-----TTEEEEEESSC
T ss_pred             EEeeCCEEEECCCCCEEEEEEecCCCCCcceEeeeccCCCCEEEEEecccCCCCCCCCEEeeCC-----CCEeEEEEeec
Confidence            456677888999999999999876556678898742    112110         112222111     12357999999


Q ss_pred             CCCCCeeEEEEEecC
Q psy4613          71 TKYDLGSYKCIAKNS   85 (96)
Q Consensus        71 ~~~d~g~y~c~~~~~   85 (96)
                      +.+|++.|.|..+..
T Consensus        81 ~~~Dsa~YyCA~~~~   95 (109)
T d1bwwa_          81 QPEDIATYYCQQYQS   95 (109)
T ss_dssp             CGGGCEEEEEEECSS
T ss_pred             eeCcCceEEEeecCC
Confidence            999999999997753

>d1hxmb1 b.1.1.1 (B:1-123) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=99.02  E-value=7.3e-09  Score=48.04  Aligned_cols=80  Identities=24%  Similarity=0.477  Sum_probs=53.3

Q ss_pred             CeEEecCceeeecCCCcEEEEEEeeecc--cceeEEeecc----ceeEe--------------cccceEEEEeccccceE
Q psy4613           2 PVIHVPNQLVGAPIDTDVTLECYVEAYP--KSINYWVRDQ----GDMVI--------------SSERYEVESISRSIFDF   61 (96)
Q Consensus         2 p~~~~~~~~~~~~~g~~~~l~c~~~~~~--~~~~~w~~~~----~~~~~--------------~~~~~~~~~~~~~~~~~   61 (96)
                      -.+..|+..+.+..|+++.|.|.+.+..  ...+.|++..    ...+.              ...++.+......   .
T Consensus         2 ~~l~Qp~~s~t~~~g~t~~LsC~~sg~~~s~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~---~   78 (123)
T d1hxmb1           2 GHLEQPQISSTKTLSKTARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPET---S   78 (123)
T ss_dssp             CEEECCCSEEEEETTCCEEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTT---T
T ss_pred             CCeECCCCeEEeCCCCCEEEEEEEcCCCcccCeEEEEEECCCCCceEeeecccccccccccccccceeEEeeeccc---c
Confidence            3567788888889999999999988643  4478898742    11110              0112333221111   2


Q ss_pred             EEEEEEccCCCCCCeeEEEEEec
Q psy4613          62 KMRLTIKKITKYDLGSYKCIAKN   84 (96)
Q Consensus        62 ~~~l~i~~~~~~d~g~y~c~~~~   84 (96)
                      ...|.|.+++.+|++.|.|..+.
T Consensus        79 ~~~L~i~~l~~~Dsa~YyCA~~~  101 (123)
T d1hxmb1          79 TSTLTIHNVEKQDIATYYCALWE  101 (123)
T ss_dssp             EEEEEECSCCGGGCEEEEEEEEE
T ss_pred             ceeecccccccccCcEEEEeeeC
Confidence            35799999999999999999764

>d1mqkl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=99.02  E-value=4.4e-09  Score=47.82  Aligned_cols=76  Identities=18%  Similarity=0.342  Sum_probs=51.8

Q ss_pred             EEecCceeeecCCCcEEEEEEeeecccceeEEeecc----ceeEec---------ccceEEEEeccccceEEEEEEEccC
Q psy4613           4 IHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQ----GDMVIS---------SERYEVESISRSIFDFKMRLTIKKI   70 (96)
Q Consensus         4 ~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~----~~~~~~---------~~~~~~~~~~~~~~~~~~~l~i~~~   70 (96)
                      +...|..+.+.+|++++|.|.........+.|++..    ...+..         ..++.....     .....|.|.++
T Consensus         4 ltQsP~~l~~~~G~svtL~C~~s~~~~~~i~WYrQ~pg~~p~~li~~~~~~~~~~~~~fs~~~~-----~~~~~L~I~~~   78 (109)
T d1mqkl_           4 LTQTPVSLSASVGETVTITCRASENIYSYLAWYQQKQGKSPQFLVYNAKTLGEGVPSRFSGSGS-----GTQFSLKINSL   78 (109)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEE-----TTEEEEEESSC
T ss_pred             EECcCCEEEECCCCCEEEEEEeCCCcCcccceeeccccCCCeEEEEeeccccCCcCCCEEEecc-----CCEEEEEEccc
Confidence            456677788899999999999766556679999742    111110         112222111     12467999999


Q ss_pred             CCCCCeeEEEEEec
Q psy4613          71 TKYDLGSYKCIAKN   84 (96)
Q Consensus        71 ~~~d~g~y~c~~~~   84 (96)
                      +.+|+|.|.|..+.
T Consensus        79 ~~~DSa~YyCA~~~   92 (109)
T d1mqkl_          79 LPEDFGSYYCQHHY   92 (109)
T ss_dssp             CGGGCEEEEEEECS
T ss_pred             cccCCeeEEEeeeC
Confidence            99999999998764

>d1j8hd1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=99.01  E-value=5.4e-09  Score=47.94  Aligned_cols=80  Identities=16%  Similarity=0.222  Sum_probs=53.2

Q ss_pred             eEEecCceeeecCCCcEEEEEEeeecccceeEEeecc----ceeEe-cc---------cceEEEEeccccceEEEEEEEc
Q psy4613           3 VIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQ----GDMVI-SS---------ERYEVESISRSIFDFKMRLTIK   68 (96)
Q Consensus         3 ~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~----~~~~~-~~---------~~~~~~~~~~~~~~~~~~l~i~   68 (96)
                      .+...+..+.+..|+.++|.|.........+.|++..    ..++. ..         .+.......   ......|.|.
T Consensus         2 ~vtQ~p~~v~~~~G~~vtl~C~~s~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~L~I~   78 (115)
T d1j8hd1           2 SVTQLGSHVSVSEGALVLLRCNYSSSVPPYLFWYVQYPNQGLQLLLKYTSAATLVKGINGFEAEFKK---SETSFHLTKP   78 (115)
T ss_dssp             EEECSCSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBG---GGTBCCEEES
T ss_pred             CEEcCCCeEEEcCCCCEEEEEEeCCCCceeEEEEEccCCCcceeeeEEeecccccccCCCCEEEECC---CCCEEEEeec
Confidence            3566778888999999999999876666689999742    12111 10         111111100   0113469999


Q ss_pred             cCCCCCCeeEEEEEecC
Q psy4613          69 KITKYDLGSYKCIAKNS   85 (96)
Q Consensus        69 ~~~~~d~g~y~c~~~~~   85 (96)
                      +++.+|+|.|.|.++..
T Consensus        79 ~~~~~Dsa~YyCa~~~~   95 (115)
T d1j8hd1          79 SAHMSDAAEYFCAVSES   95 (115)
T ss_dssp             SCCGGGCEEEEEEEESS
T ss_pred             cccccCCccceeeecCC
Confidence            99999999999998764

>d1akjd_ b.1.1.1 (D:) CD8 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=4.2e-09  Score=48.23  Aligned_cols=78  Identities=18%  Similarity=0.229  Sum_probs=51.3

Q ss_pred             eEEecCceeeecCCCcEEEEEEeeecc-cceeEEeecc----cee---Eec------------ccceEEEEeccccceEE
Q psy4613           3 VIHVPNQLVGAPIDTDVTLECYVEAYP-KSINYWVRDQ----GDM---VIS------------SERYEVESISRSIFDFK   62 (96)
Q Consensus         3 ~~~~~~~~~~~~~g~~~~l~c~~~~~~-~~~~~w~~~~----~~~---~~~------------~~~~~~~~~~~~~~~~~   62 (96)
                      .+...|....+.+|++++|.|...... ...+.|++..    ...   +..            ..++......     ..
T Consensus         2 q~~~sP~~~t~~~G~~vtL~C~~~~~~~~~~i~WyrQ~~g~~~~~~~~i~~~~~~~~~~~~~~~~rfs~~~~~-----~~   76 (114)
T d1akjd_           2 QFRVSPLDRTWNLGETVELKCQVLLSNPTSGCSWLFQPRGAAASPTFLLYLSQNKPKAAEGLDTQRFSGKRLG-----DT   76 (114)
T ss_dssp             CEEEECCSCCCCTTCCEEEEEEECCSSCCSCEEEEEECSSTTCCCEEEEEESSSCCEECTTCCTTTEEEEEET-----TE
T ss_pred             CeeECCCcEeccCCCcEEEEEEeCCCcCCCCEEEEEECCCCCcEEEEEEecCCCeeEcCCCCCCcEEEEECCC-----CC
Confidence            355667777899999999999976533 4568998742    111   100            1122221110     23


Q ss_pred             EEEEEccCCCCCCeeEEEEEecC
Q psy4613          63 MRLTIKKITKYDLGSYKCIAKNS   85 (96)
Q Consensus        63 ~~l~i~~~~~~d~g~y~c~~~~~   85 (96)
                      ..|.|.+++.+|+|.|.|.++..
T Consensus        77 ~~L~I~~l~~~Dsg~YyCa~~~~   99 (114)
T d1akjd_          77 FVLTLSDFRRENEGYYFCSALSN   99 (114)
T ss_dssp             EEEEESSCCGGGCEEEEEEEEET
T ss_pred             hhcEEccCCCCCCEEEeEeEcCC
Confidence            57999999999999999998754

>d2nxyb1 b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD4 V-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=1.1e-09  Score=48.84  Aligned_cols=75  Identities=16%  Similarity=0.180  Sum_probs=47.3

Q ss_pred             eeecCCCcEEEEEEeeecccceeEEeeccceeEe-cccceEEEEec----------cccceEEEEEEEccCCCCCCeeEE
Q psy4613          11 VGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVI-SSERYEVESIS----------RSIFDFKMRLTIKKITKYDLGSYK   79 (96)
Q Consensus        11 ~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~-~~~~~~~~~~~----------~~~~~~~~~l~i~~~~~~d~g~y~   79 (96)
                      +....|++++|.|.........+.|++....... ...........          ........+|.|.+++..|+|.|.
T Consensus         4 V~~~~G~svtL~C~~s~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~l~~~DsG~Y~   83 (97)
T d2nxyb1           4 VLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTYI   83 (97)
T ss_dssp             EEEETTSCEEECCBCSSSSCCCEEEEETTCCEEEEEETTEEEECSSTTGGGEECCGGGGGGTBCCEEECSCCGGGCEEEE
T ss_pred             EEEEcCCcEEEEEEEecCCCceEEEEEeCCceeeeecceeeeecCceeccceEEEeccCCCCEEEEEECCCChHHCEEEE
Confidence            4567899999999987766668899875432211 11111110000          000112346999999999999999


Q ss_pred             EEEecC
Q psy4613          80 CIAKNS   85 (96)
Q Consensus        80 c~~~~~   85 (96)
                      |.+.+.
T Consensus        84 C~v~~~   89 (97)
T d2nxyb1          84 CEVEDQ   89 (97)
T ss_dssp             EEETTE
T ss_pred             EEEecC
Confidence            998763

>d1i9ea_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.97  E-value=7e-09  Score=47.55  Aligned_cols=79  Identities=15%  Similarity=0.246  Sum_probs=51.8

Q ss_pred             eEEecCceeeecCCCcEEEEEEeeecccceeEEeecc----ceeEe-c--c-------cceEEEEeccccceEEEEEEEc
Q psy4613           3 VIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQ----GDMVI-S--S-------ERYEVESISRSIFDFKMRLTIK   68 (96)
Q Consensus         3 ~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~----~~~~~-~--~-------~~~~~~~~~~~~~~~~~~l~i~   68 (96)
                      .+..++..+.+..|++++|.|.......+.+.|++..    ..++. .  .       ......... ..  ....|.|.
T Consensus         2 sV~Q~~~~v~v~~G~svtl~C~~~~~~~~~~~Wyrq~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~L~I~   78 (115)
T d1i9ea_           2 SVTQPDARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGLQLLLKYYSGDPVVQGVNGFEAEFSK-SN--SSFHLRKA   78 (115)
T ss_dssp             EEECCCSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBT-TT--TBCCEEES
T ss_pred             CEEcCCCeEEECCCCCEEEEEEEcCCCCCCEEEEEECCCCceeeeeeeccceeccccCcceeEEEeC-cC--CEEEEecc
Confidence            3567778888999999999999876666788898731    11111 0  0       011111000 01  22569999


Q ss_pred             cCCCCCCeeEEEEEec
Q psy4613          69 KITKYDLGSYKCIAKN   84 (96)
Q Consensus        69 ~~~~~d~g~y~c~~~~   84 (96)
                      +++.+|+|.|.|....
T Consensus        79 ~~~~~Dsg~YyCa~~~   94 (115)
T d1i9ea_          79 SVHWSDSAVYFCAVSG   94 (115)
T ss_dssp             SCCGGGCEEEEEEEEE
T ss_pred             cccccccceecccccC
Confidence            9999999999998764

>d2ak4d1 b.1.1.1 (D:1-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.96  E-value=2.6e-08  Score=45.50  Aligned_cols=81  Identities=20%  Similarity=0.317  Sum_probs=52.0

Q ss_pred             eEEecCceeeecCCCcEEEEEEeeec-ccceeEEeecc--ce--eEe--c-c-------cceEEEEeccccceEEEEEEE
Q psy4613           3 VIHVPNQLVGAPIDTDVTLECYVEAY-PKSINYWVRDQ--GD--MVI--S-S-------ERYEVESISRSIFDFKMRLTI   67 (96)
Q Consensus         3 ~~~~~~~~~~~~~g~~~~l~c~~~~~-~~~~~~w~~~~--~~--~~~--~-~-------~~~~~~~~~~~~~~~~~~l~i   67 (96)
                      .+...+..+.+..|++++|.|..... ....+.|++..  ..  .+.  . .       .+..+....   ......|.|
T Consensus         2 ~VtQ~~~~v~v~~G~~VtL~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~L~I   78 (114)
T d2ak4d1           2 KVTQAQTEISVVEKEDVTLDCVYETRDTTYYLFWYKQPPSGELVFLIRRNSFDEQNEISGRYSWNFQK---STSSFNFTI   78 (114)
T ss_dssp             EEECCCCEEEEETTCCEEECCEEECSCSSCEEEEEEECTTCCCEEEEEEETTSCSEEEETTEEEEEET---TTTEEEEEE
T ss_pred             cEEecCCeEEEeCCCCEEEEEEEcCCCcCccEEEEEccccCcceEeeeEeeeeecCCCCcceEEEEcC---CCCEEEEee
Confidence            35667778889999999999987653 34468898732  11  111  0 0       111111111   112467999


Q ss_pred             ccCCCCCCeeEEEEEecCC
Q psy4613          68 KKITKYDLGSYKCIAKNSL   86 (96)
Q Consensus        68 ~~~~~~d~g~y~c~~~~~~   86 (96)
                      .+++..|+|.|.|......
T Consensus        79 ~~~~~~Dsg~YyCa~~~~~   97 (114)
T d2ak4d1          79 TASQVVDSAVYFCALSGFY   97 (114)
T ss_dssp             SSCCGGGCEEEEEEEECSB
T ss_pred             cccccccCCCceEeCCCCC
Confidence            9999999999999876643

>d2fx7l1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 3.2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 3.2 [TaxId: 9606]

Probab=98.94  E-value=1.1e-08  Score=46.40  Aligned_cols=77  Identities=16%  Similarity=0.286  Sum_probs=51.0

Q ss_pred             EEecCceeeecCCCcEEEEEEeeec-ccceeEEeecc--c--eeEe---------cccceEEEEeccccceEEEEEEEcc
Q psy4613           4 IHVPNQLVGAPIDTDVTLECYVEAY-PKSINYWVRDQ--G--DMVI---------SSERYEVESISRSIFDFKMRLTIKK   69 (96)
Q Consensus         4 ~~~~~~~~~~~~g~~~~l~c~~~~~-~~~~~~w~~~~--~--~~~~---------~~~~~~~~~~~~~~~~~~~~l~i~~   69 (96)
                      +...|..+.+..|+++.|.|..... ....+.|++..  .  ..+.         ...++.....     .....|.|.+
T Consensus         4 ltQ~P~~~~v~~G~tv~l~C~~~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~s~~~~-----~~~~~L~I~~   78 (108)
T d2fx7l1           4 LTQSPGTQSLSPGERATLSCRASQSVGNNKLAWYQQRPGQAPRLLIYGASSRPSGVADRFSGSGS-----GTDFTLTISR   78 (108)
T ss_dssp             EECSSSEEEECTTCCEEEEEEESSCCGGGCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEE-----TTEEEEEESS
T ss_pred             EEeeCCeEEECCCCCEEEEEEeecCCCCccceeEeccccCCCEEEEeeecccccCCccceeeecC-----CCEEEEEehH
Confidence            4566778889999999999987543 34468898742  1  1111         0112222111     1246799999


Q ss_pred             CCCCCCeeEEEEEecC
Q psy4613          70 ITKYDLGSYKCIAKNS   85 (96)
Q Consensus        70 ~~~~d~g~y~c~~~~~   85 (96)
                      ++.+|+|.|.|..+..
T Consensus        79 ~~~~Dsa~YyCa~~~~   94 (108)
T d2fx7l1          79 LEPEDFAVYYCQQYGQ   94 (108)
T ss_dssp             CCGGGCSEEEEEECSS
T ss_pred             heecccEEEeeecCCC
Confidence            9999999999997643

>d2aq2a1 b.1.1.1 (A:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.94  E-value=2.1e-08  Score=45.56  Aligned_cols=81  Identities=19%  Similarity=0.252  Sum_probs=51.0

Q ss_pred             eEEecCceeeecCCCcEEEEEEeeecccceeEEeecc--ce--eEe-c--ccceEEEEecccc-----ceEEEEEEEccC
Q psy4613           3 VIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQ--GD--MVI-S--SERYEVESISRSI-----FDFKMRLTIKKI   70 (96)
Q Consensus         3 ~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~--~~--~~~-~--~~~~~~~~~~~~~-----~~~~~~l~i~~~   70 (96)
                      .+...|..+.+..|++++|.|.... ....+.|++..  ..  .+. .  .............     ......|.|.++
T Consensus         3 ~V~Q~P~~~~~~~G~~vtl~C~~s~-~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~   81 (110)
T d2aq2a1           3 AVTQSPRNKVAVTGEKVTLSCQQTN-NHNNMYWYRQDTGHGLRLIHYSYGVGNTEKGDIPDGYEASRPSQEQFSLILESA   81 (110)
T ss_dssp             SEEEECSEEEECTTCCEEEEEEESS-CCSEEEEEEECTTSCEEEEEEESSTTCCEECSCCTTCEEEEEETTEEEEEESSC
T ss_pred             CEEEeCCeEEEcCCCCEEEEEEECC-CcCcEEEEEEcccCCceEEEEEeecCCcccCCCCCCEEEEeccCCEEEEEECCC
Confidence            4667777888999999999998654 45678999842  11  111 0  0000000000000     002467899999


Q ss_pred             CCCCCeeEEEEEec
Q psy4613          71 TKYDLGSYKCIAKN   84 (96)
Q Consensus        71 ~~~d~g~y~c~~~~   84 (96)
                      +.+|+|.|.|..+.
T Consensus        82 ~~~Dsa~YyCa~~~   95 (110)
T d2aq2a1          82 TPSQTSVYFCASGG   95 (110)
T ss_dssp             CGGGCEEEEEEEEE
T ss_pred             CHhhCEEEEEeeCC
Confidence            99999999998775

>d3cx5k1 b.1.1.1 (K:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.94  E-value=2.2e-09  Score=48.67  Aligned_cols=76  Identities=18%  Similarity=0.355  Sum_probs=50.8

Q ss_pred             EEecCceeeecCCCcEEEEEEeeecccceeEEeecc--ce--eEec---------ccceEEEEeccccceEEEEEEEccC
Q psy4613           4 IHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQ--GD--MVIS---------SERYEVESISRSIFDFKMRLTIKKI   70 (96)
Q Consensus         4 ~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~--~~--~~~~---------~~~~~~~~~~~~~~~~~~~l~i~~~   70 (96)
                      +...|..+.+.+|++++|.|.........+.|++..  ..  .+..         ..++....     ......|.|.++
T Consensus         4 ltQsP~s~~~~~G~~vtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~-----~~~~~~L~I~~~   78 (107)
T d3cx5k1           4 LTQTPVSLAASLGDRVTISCRASQDINNFLNWYQQKPDGTIKLLIYYTSRLHAGVPSRFSGSG-----SGTDYSLTISNL   78 (107)
T ss_dssp             EEEESTTCCBCSSSCCEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTCCCEE-----ETTEEEEECSCC
T ss_pred             EECcCCEEEECCCCCEEEEEEcCCCcCCCeEEEEcCCCCcceEEEEeecccCCCcCCCEEEEc-----cCCEEEEEEeEe
Confidence            456667788899999999998766556678999742  11  1111         01111111     012467999999


Q ss_pred             CCCCCeeEEEEEec
Q psy4613          71 TKYDLGSYKCIAKN   84 (96)
Q Consensus        71 ~~~d~g~y~c~~~~   84 (96)
                      +.+|++.|.|..+.
T Consensus        79 ~~~Dsa~YyCa~~~   92 (107)
T d3cx5k1          79 EPEDIATYFCQHHI   92 (107)
T ss_dssp             CSCCCSEEEEEECS
T ss_pred             eecCCCcEEeeeCC
Confidence            99999999998764

>d1h5ba_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.94  E-value=4e-08  Score=44.85  Aligned_cols=83  Identities=20%  Similarity=0.270  Sum_probs=52.2

Q ss_pred             eEEecCceeeecCCCcEEEEEEeeecccceeEEeecc--cee--Ee-cccceE----EEEeccccceEEEEEEEccCCCC
Q psy4613           3 VIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQ--GDM--VI-SSERYE----VESISRSIFDFKMRLTIKKITKY   73 (96)
Q Consensus         3 ~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~--~~~--~~-~~~~~~----~~~~~~~~~~~~~~l~i~~~~~~   73 (96)
                      .+...+..+.+..|+.++|.|.... ....+.|++..  ..+  +. ......    ..............|.|.+++.+
T Consensus         3 ~V~Q~P~~~~v~~G~~vtl~C~~~~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~   81 (113)
T d1h5ba_           3 QVEQSPSALSLHEGTDSALRCNFTT-TMRSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSERARYSTLHIRDAQLE   81 (113)
T ss_dssp             SEEEECSEEEEETTCCEEEEEEESS-CCSEEEEEEECTTSCEEEEEEESSSEEEETTEEEECCSSSSSEEEEEECSCCGG
T ss_pred             CeEECCCEEEEcCCCCEEEEEEEec-CCccceEEEeecccceEEEEEeeeeeccccccceEEeecCCceeEEEECCCCHh
Confidence            3566777888999999999999765 44578998842  111  11 100000    00000111113467999999999


Q ss_pred             CCeeEEEEEecCC
Q psy4613          74 DLGSYKCIAKNSL   86 (96)
Q Consensus        74 d~g~y~c~~~~~~   86 (96)
                      |+|.|.|.++...
T Consensus        82 Dsa~YyCa~~~~~   94 (113)
T d1h5ba_          82 DSGTYFCAAEASS   94 (113)
T ss_dssp             GCEEEEEEEECSS
T ss_pred             HCEEEEEEecCCC
Confidence            9999999987543

>d1ucta1 b.1.1.4 (A:2-100) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=4.9e-09  Score=46.84  Aligned_cols=80  Identities=14%  Similarity=0.152  Sum_probs=50.2

Q ss_pred             CCeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEE
Q psy4613           1 HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKC   80 (96)
Q Consensus         1 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c   80 (96)
                      +|.+...+.. .+..|.+++|.|.... +...+.|++++.............     .......+.|.+++..|.|.|.|
T Consensus         7 kPsLsa~P~~-~V~~G~~VTL~C~~~~-~~~~f~l~k~g~~~~~~~~~~~~~-----~~~~~a~F~l~~vt~~~~G~Y~C   79 (99)
T d1ucta1           7 MPFISAKSSP-VIPLDGSVKIQCQAIR-EAYLTQLMIIKNSTYREIGRRLKF-----WNETDPEFVIDHMDANKAGRYQC   79 (99)
T ss_dssp             CCCEEESSCS-EEETTCCEEEEECCCT-TCSEEEEEEEETTEEEECSEECC---------CCCEEEECSCCGGGCEEEEE
T ss_pred             CCEEEecCCC-ceeCCCeEEEEEcCCC-CCcEEEEEECCCcCceeccccccC-----CCCceEEEEecCCCHHHCceEEE
Confidence            4667766654 4778999999998653 444677777654322111110000     00022458899999999999999


Q ss_pred             EEecCCC
Q psy4613          81 IAKNSLG   87 (96)
Q Consensus        81 ~~~~~~g   87 (96)
                      ...+...
T Consensus        80 ~y~~~~~   86 (99)
T d1ucta1          80 QYRIGHY   86 (99)
T ss_dssp             EEEETTT
T ss_pred             EEECCCc
Confidence            9877654

>d1fo0a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.93  E-value=2.5e-08  Score=45.62  Aligned_cols=79  Identities=16%  Similarity=0.344  Sum_probs=51.7

Q ss_pred             EEecCceeeecCCCcEEEEEEeeec-ccceeEEeecc--cee---Ee-c--------ccceEEEEeccccceEEEEEEEc
Q psy4613           4 IHVPNQLVGAPIDTDVTLECYVEAY-PKSINYWVRDQ--GDM---VI-S--------SERYEVESISRSIFDFKMRLTIK   68 (96)
Q Consensus         4 ~~~~~~~~~~~~g~~~~l~c~~~~~-~~~~~~w~~~~--~~~---~~-~--------~~~~~~~~~~~~~~~~~~~l~i~   68 (96)
                      +...+..+.+.+|++++|.|..... ....+.|++..  ..+   +. .        ..++.......   .....|.|.
T Consensus         2 VtQ~p~~v~~~~G~~Vtl~C~~~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~~L~I~   78 (115)
T d1fo0a_           2 VTQTQTSISVMEKTTVTMDCVYETQDSSYFLFWYKQTASGEIVFLIRQDSYKKENATVGHYSLNFQKP---KSSIGLIIT   78 (115)
T ss_dssp             EECCCCEEEEETTCCEEECCEECCCCSSCEEEEEEECTTCCEEEEEEEETTCCSCCEETTEEEEEEGG---GTEEEEEEC
T ss_pred             eEccCCEEEEcCCCCEEEEEEEcCCCCCCCCEEEEeCCCCCCEEEEEEecceeecccCCceEEEEecc---CCEEEEEEC
Confidence            5567778889999999999987543 34468899742  111   10 0        01222221111   124679999


Q ss_pred             cCCCCCCeeEEEEEecC
Q psy4613          69 KITKYDLGSYKCIAKNS   85 (96)
Q Consensus        69 ~~~~~d~g~y~c~~~~~   85 (96)
                      +++.+|+|.|.|..+..
T Consensus        79 ~~~~~Dsa~YyCa~~~~   95 (115)
T d1fo0a_          79 ATQIEDSAVYFCAMRGD   95 (115)
T ss_dssp             SCCGGGCEEEEEEEECC
T ss_pred             CCCccccccccceeecC
Confidence            99999999999998754

>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.92  E-value=2e-09  Score=48.11  Aligned_cols=79  Identities=15%  Similarity=0.060  Sum_probs=48.4

Q ss_pred             eeecCCCcEEEEEEeee--cccceeEEeeccceeEec-ccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCC
Q psy4613          11 VGAPIDTDVTLECYVEA--YPKSINYWVRDQGDMVIS-SERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLG   87 (96)
Q Consensus        11 ~~~~~g~~~~l~c~~~~--~~~~~~~w~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g   87 (96)
                      +....|+++.|.|....  .....+.|.+.+..+... ...................|.|.+++..|+|.|.|.+.+..|
T Consensus         5 V~G~~G~sV~L~~~~~~~~~~i~~I~W~~~~~~i~~~~~~~~~~~~~~~~~~~~ngSL~I~nl~~~DsG~Y~c~v~~~~g   84 (98)
T d1hnga1           5 VWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDSGTYNVTVYSTNG   84 (98)
T ss_dssp             EEEETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEECTTSCEEESSCCGGGCEEEEEEEEETTC
T ss_pred             EEEecCCCEEEECCCCCCccchheeeeeccccceeEEccCCccccCCCeEEECCCccEEEeCCCHHHCEEEEEEEEeCCC
Confidence            45678999999996432  233478999876544211 110000000000000124699999999999999999998888


Q ss_pred             ce
Q psy4613          88 EV   89 (96)
Q Consensus        88 ~~   89 (96)
                      ..
T Consensus        85 ~~   86 (98)
T d1hnga1          85 TR   86 (98)
T ss_dssp             CE
T ss_pred             CE
Confidence            65

>d1rzfl1 b.1.1.1 (L:2-108) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=98.92  E-value=1.2e-08  Score=46.52  Aligned_cols=76  Identities=21%  Similarity=0.288  Sum_probs=49.9

Q ss_pred             EEecCceeeecCCCcEEEEEEeeecc--cceeEEeecc----ceeEe---------cccceEEEEeccccceEEEEEEEc
Q psy4613           4 IHVPNQLVGAPIDTDVTLECYVEAYP--KSINYWVRDQ----GDMVI---------SSERYEVESISRSIFDFKMRLTIK   68 (96)
Q Consensus         4 ~~~~~~~~~~~~g~~~~l~c~~~~~~--~~~~~w~~~~----~~~~~---------~~~~~~~~~~~~~~~~~~~~l~i~   68 (96)
                      +..|+ .+.+.+|++++|.|...+..  ...+.|++..    ...+.         ...++......     ....|.|.
T Consensus         4 ltQp~-s~~v~~G~svtl~C~~s~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~-----~~~~L~I~   77 (111)
T d1rzfl1           4 LTQPP-SVSAAPGQKVTISCSGSSSNIGNNDVSWYQQFPGTVPKLVIYENNERPSGIPDRFSGSKSG-----TSATLGIT   77 (111)
T ss_dssp             BBCCS-EEEECTTSCEEEEEECCCCCCCTSCEEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEET-----TEEEEEES
T ss_pred             eeeCc-ceEeCCCCCEEEEEEECCcCCcCCcccceeeecccceEEEeeecCCCccccccceeeeCCC-----CEeeeEEe
Confidence            44554 68899999999999876533  4568998642    11111         01222222111     24679999


Q ss_pred             cCCCCCCeeEEEEEecC
Q psy4613          69 KITKYDLGSYKCIAKNS   85 (96)
Q Consensus        69 ~~~~~d~g~y~c~~~~~   85 (96)
                      +++.+|++.|.|..+..
T Consensus        78 ~~~~~Dsa~YyCA~~~~   94 (111)
T d1rzfl1          78 GLQTGDEADYYCGTWDS   94 (111)
T ss_dssp             SCCGGGCSEEEEEEEET
T ss_pred             eeccccCcceEEeecCC
Confidence            99999999999998754

>d1yqvl1 b.1.1.1 (L:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.91  E-value=2.6e-08  Score=44.85  Aligned_cols=75  Identities=19%  Similarity=0.336  Sum_probs=49.7

Q ss_pred             EEecCceeeecCCCcEEEEEEeeecccceeEEeeccc----eeEec---------ccceEEEEeccccceEEEEEEEccC
Q psy4613           4 IHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQG----DMVIS---------SERYEVESISRSIFDFKMRLTIKKI   70 (96)
Q Consensus         4 ~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~----~~~~~---------~~~~~~~~~~~~~~~~~~~l~i~~~   70 (96)
                      +...|..+.+..|++++|.|.... ....+.|++...    .+...         ..++.....     .....|.|.++
T Consensus         3 vtQsP~~l~~~~G~~vtl~C~~s~-~~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~~f~~~~~-----~~~~~L~I~~~   76 (104)
T d1yqvl1           3 LTQSPAIMSASPGEKVTMTCSASS-SVNYMYWYQQKSGTSPKRWIYDTSKLASGVPVRFSGSGS-----GTSYSLTISSM   76 (104)
T ss_dssp             EEEESSEEEECTTCCEEEEEEESS-CCSCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEE-----TTEEEEEESSC
T ss_pred             EeCcCCeEEECCCCCEEEEEEeCC-CCCccEEEEeeccCceEEEEecccccCCCcCceEEEecC-----CCEEEEEeccc
Confidence            456778888999999999998643 345688987421    11110         111111110     12467999999


Q ss_pred             CCCCCeeEEEEEec
Q psy4613          71 TKYDLGSYKCIAKN   84 (96)
Q Consensus        71 ~~~d~g~y~c~~~~   84 (96)
                      +.+|++.|.|..+.
T Consensus        77 ~~~Dsa~YyCa~~~   90 (104)
T d1yqvl1          77 ETEDAATYYCQQWG   90 (104)
T ss_dssp             CGGGCEEEEEEECS
T ss_pred             CcccCCeEEEEecC
Confidence            99999999998754

>d2atpb1 b.1.1.1 (B:1-115) CD8 {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.91  E-value=1e-08  Score=46.92  Aligned_cols=76  Identities=18%  Similarity=0.286  Sum_probs=48.9

Q ss_pred             ecCceeeecCCCcEEEEEEeeec-ccceeEEeeccc----e-e--Ee--cc------------cceEEEEeccccceEEE
Q psy4613           6 VPNQLVGAPIDTDVTLECYVEAY-PKSINYWVRDQG----D-M--VI--SS------------ERYEVESISRSIFDFKM   63 (96)
Q Consensus         6 ~~~~~~~~~~g~~~~l~c~~~~~-~~~~~~w~~~~~----~-~--~~--~~------------~~~~~~~~~~~~~~~~~   63 (96)
                      ..+..+.+..|+++.|.|.+.+. ....+.|++...    . +  +.  ..            .+........   ....
T Consensus         3 Q~P~~~~v~~G~sv~l~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~---~~~~   79 (115)
T d2atpb1           3 QTPSSLLVQTNHTAKMSCEVKSISKLTSIYWLRERQDPKDKYFEFLASWSSSKGVLYGESVDKKRNIILESSD---SRRP   79 (115)
T ss_dssp             EECSEEEECTTSCEEEEEECCSSCCSSEEEEEEEEECSSCEEEEEEEEEETTTEEEECGGGTTTCCEEEESTT---SSSC
T ss_pred             eeCCcEEEcCCCCEEEEEEEeCCCCCCceEEEEeecCCCCeEEEEeeEEecccCcEecCCcCCCCEEEEEeCC---CCeE
Confidence            45667789999999999998763 345789987421    1 1  10  00            0111111111   1235


Q ss_pred             EEEEccCCCCCCeeEEEEEec
Q psy4613          64 RLTIKKITKYDLGSYKCIAKN   84 (96)
Q Consensus        64 ~l~i~~~~~~d~g~y~c~~~~   84 (96)
                      .|.|.+++.+|+|.|.|....
T Consensus        80 ~L~I~~~~~~Dsg~Y~Ca~~~  100 (115)
T d2atpb1          80 FLSIMNVKPEDSDFYFCATVG  100 (115)
T ss_dssp             EEEECSCCGGGCEEEEEEEEC
T ss_pred             EEeecccCCCCCcEEEEeEcC
Confidence            699999999999999998864

>d1smoa_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=2.2e-08  Score=45.71  Aligned_cols=79  Identities=13%  Similarity=0.197  Sum_probs=49.9

Q ss_pred             EecCceeeecCCCcEEEEEEeeec--ccceeEEeeccc----eeEec------------ccceEEEEeccccceEEEEEE
Q psy4613           5 HVPNQLVGAPIDTDVTLECYVEAY--PKSINYWVRDQG----DMVIS------------SERYEVESISRSIFDFKMRLT   66 (96)
Q Consensus         5 ~~~~~~~~~~~g~~~~l~c~~~~~--~~~~~~w~~~~~----~~~~~------------~~~~~~~~~~~~~~~~~~~l~   66 (96)
                      ..|...+.+.+|++++|.|...+.  ....+.|++...    ..+..            ..++.+......   ....|.
T Consensus         3 ~~pe~~~~v~eG~svtl~C~~~~~~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~---~~~~Lt   79 (113)
T d1smoa_           3 KLTEEKYELKEGQTLDVKCDYTLEKFASSQKAWQIIRDGEMPKTLACTERPSKNSHPVQVGRIILEDYHDH---GLLRVR   79 (113)
T ss_dssp             EESEEEEECCTTCCEEEEEECCHHHHTTSCEEEEEECTTSCCEEEEECCSSCCSSCCEEETTEEEEEETTT---TEEEEE
T ss_pred             eeccCcEEEccCCCEEEEEEeCCCCCCCCEEEEEECCCCCCCEEEEecCCCCceEcceECCeEEEEEECCC---CEEEEE
Confidence            345566778899999999987643  344678987421    11110            012222211111   236799


Q ss_pred             EccCCCCCCeeEEEEEecCC
Q psy4613          67 IKKITKYDLGSYKCIAKNSL   86 (96)
Q Consensus        67 i~~~~~~d~g~y~c~~~~~~   86 (96)
                      |.+++.+|+|.|.|.+....
T Consensus        80 i~~l~~~Dsg~Y~Cav~~~~   99 (113)
T d1smoa_          80 MVNLQVEDSGLYQCVIYQPP   99 (113)
T ss_dssp             ECSCCGGGCEEEEEEECCTT
T ss_pred             EccCCcccCceEEEEEECCC
Confidence            99999999999999987643

>d1oaql_ b.1.1.1 (L:) Immunoglobulin light chain lambda variable domain, VL-lambda {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.90  E-value=2.3e-08  Score=45.47  Aligned_cols=77  Identities=22%  Similarity=0.270  Sum_probs=50.6

Q ss_pred             CeEEecCceeeecCCCcEEEEEEeeecc---cceeEEeecc--ce--eEec---------ccceEEEEeccccceEEEEE
Q psy4613           2 PVIHVPNQLVGAPIDTDVTLECYVEAYP---KSINYWVRDQ--GD--MVIS---------SERYEVESISRSIFDFKMRL   65 (96)
Q Consensus         2 p~~~~~~~~~~~~~g~~~~l~c~~~~~~---~~~~~w~~~~--~~--~~~~---------~~~~~~~~~~~~~~~~~~~l   65 (96)
                      +.+..++ .+.+.+|++++|.|...+..   ...+.|++..  ..  ++..         .+++.....     .....|
T Consensus         2 ~~~tQ~~-slsvs~G~tvtl~C~~s~~~~~~~~~v~WyrQ~pg~~p~~l~y~~~~~~~~~~~rf~~s~~-----~~~~~L   75 (110)
T d1oaql_           2 AVVTQES-ALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLI-----GNKAAL   75 (110)
T ss_dssp             CCEEECS-EEEECTTCEEEEEEEETTBCCCGGGCCEEEEEETTTEEEEEEETTTEECTTSCTTEEEEEE-----TTEEEE
T ss_pred             CCEeeCC-CEEeCCCCCEEEEEEEcCCCCcceeeeEEEEeecccceeeeeeeeceeccccceeeeeccc-----ccceee
Confidence            3456665 57789999999999986432   2358898742  11  1111         123332221     134679


Q ss_pred             EEccCCCCCCeeEEEEEec
Q psy4613          66 TIKKITKYDLGSYKCIAKN   84 (96)
Q Consensus        66 ~i~~~~~~d~g~y~c~~~~   84 (96)
                      .|.+++.+|+|.|.|..+.
T Consensus        76 ~I~~~~~~Dsa~YyCa~~~   94 (110)
T d1oaql_          76 TITGAQTEDEAIYFCALWY   94 (110)
T ss_dssp             EEESCCGGGCEEEEEEEEE
T ss_pred             ecCCCCccccEeEEEEccc
Confidence            9999999999999999775

>d1lgva1 b.1.1.1 (A:1-112) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=98.88  E-value=2.5e-08  Score=45.46  Aligned_cols=76  Identities=17%  Similarity=0.306  Sum_probs=49.7

Q ss_pred             EEecCceeeecCCCcEEEEEEeeecc---cceeEEeecc----ceeEe---------cccceEEEEeccccceEEEEEEE
Q psy4613           4 IHVPNQLVGAPIDTDVTLECYVEAYP---KSINYWVRDQ----GDMVI---------SSERYEVESISRSIFDFKMRLTI   67 (96)
Q Consensus         4 ~~~~~~~~~~~~g~~~~l~c~~~~~~---~~~~~w~~~~----~~~~~---------~~~~~~~~~~~~~~~~~~~~l~i   67 (96)
                      +..| ..+.+.+|++++|.|...+..   ...+.|++..    .....         ...++......     ....|.|
T Consensus         4 ltQP-~s~~~~~G~svtl~C~~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~-----~~~~L~I   77 (112)
T d1lgva1           4 LTQP-ASVSGSPGQSITVSCTGVSSIVGSYNLVSWYQQHPGKAPKLLTYEVNKRPSGVSDRFSGSKSG-----NSASLTI   77 (112)
T ss_dssp             BBCC-SEEEECTTCCEEEEEECCCCSSSCCCCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEET-----TEEEEEE
T ss_pred             ccCC-CcEEECCCCCEEEEEEeCCCCCCCCCcceeeeeeecccceeeeeeeccccCCCcccEEEECCC-----CEeeEEe
Confidence            4454 568899999999999976532   3468899742    11111         01122222111     2467999


Q ss_pred             ccCCCCCCeeEEEEEecC
Q psy4613          68 KKITKYDLGSYKCIAKNS   85 (96)
Q Consensus        68 ~~~~~~d~g~y~c~~~~~   85 (96)
                      .+++.+|++.|.|.....
T Consensus        78 ~~l~~~Dsa~YyCa~~~~   95 (112)
T d1lgva1          78 SGLQAEDEADYYCSSYDG   95 (112)
T ss_dssp             CSCCGGGCEEEEEEEECS
T ss_pred             CcCccccCEEEEEeeecC
Confidence            999999999999988754

>d2gj6d1 b.1.1.1 (D:15-114) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.88  E-value=5.3e-08  Score=43.02  Aligned_cols=67  Identities=15%  Similarity=0.340  Sum_probs=43.7

Q ss_pred             CCcEEEEEEeeecccceeEEeecc----ceeEe--------cccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEe
Q psy4613          16 DTDVTLECYVEAYPKSINYWVRDQ----GDMVI--------SSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAK   83 (96)
Q Consensus        16 g~~~~l~c~~~~~~~~~~~w~~~~----~~~~~--------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~   83 (96)
                      |+.++|.|.........+.|++..    .+++.        ...++...... .  .....|.|.+++.+|+|.|.|.++
T Consensus         1 G~~vtl~C~~~~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~rf~~~~~~-~--~~~~sL~I~~~~~~Dsg~YyCa~~   77 (94)
T d2gj6d1           1 GAIASLNCTYSDRGSQSFFWYRQYSGKSPELIMSIYSNGDKEDGRFTAQLNK-A--SQYVSLLIRDSQPSDSATYLCAVT   77 (94)
T ss_dssp             TSCEEEEEEECCTTCCEEEEEEECTTSCCEEEEEECSSEEEEETTEEEEEET-T--TTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             CccEEEEEEEccccCCcEEEEEECCCcccccceeeeeeccCCCCcEEEEecC-C--CCEEeEEeeccccCcCccceeeEe
Confidence            678999999877677789998742    11111        11122221111 1  124679999999999999999987


Q ss_pred             cC
Q psy4613          84 NS   85 (96)
Q Consensus        84 ~~   85 (96)
                      ..
T Consensus        78 ~~   79 (94)
T d2gj6d1          78 TD   79 (94)
T ss_dssp             SS
T ss_pred             cC
Confidence            54

>d1w72l1 b.1.1.1 (L:1-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=98.88  E-value=1.9e-08  Score=45.70  Aligned_cols=75  Identities=19%  Similarity=0.268  Sum_probs=49.5

Q ss_pred             EecCceeeecCCCcEEEEEEeeecccceeEEeecc--c--eeEec---------ccceEEEEeccccceEEEEEEEccCC
Q psy4613           5 HVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQ--G--DMVIS---------SERYEVESISRSIFDFKMRLTIKKIT   71 (96)
Q Consensus         5 ~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~--~--~~~~~---------~~~~~~~~~~~~~~~~~~~l~i~~~~   71 (96)
                      ..|+ .+.+.+|++++|.|.........+.|++..  .  ..+..         ..+.......     ....|.|.+++
T Consensus         5 tQp~-sl~~~~G~svtl~C~~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~-----~~~~L~I~~l~   78 (109)
T d1w72l1           5 TQPP-SVSVAPGQTARITCGGNNIGSRSVHWYQQKPGQAPVLVVYDDSDRPSGIPERFSGSNSG-----NMATLTISRVE   78 (109)
T ss_dssp             BCCS-EEEECTTSCEEEEEECTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEET-----TEEEEEESSCC
T ss_pred             eeCC-eEEECCCCCEEEEEEcCCCCCcceeeeeccccceeEEEEEccccCCCceeeeEeeecCC-----CccceEEeeec
Confidence            4454 577899999999998665455679998742  1  11110         1122222111     24678999999


Q ss_pred             CCCCeeEEEEEecC
Q psy4613          72 KYDLGSYKCIAKNS   85 (96)
Q Consensus        72 ~~d~g~y~c~~~~~   85 (96)
                      .+|++.|.|..+..
T Consensus        79 ~~DsavYyCA~~~~   92 (109)
T d1w72l1          79 AGDEADYYCQVWDS   92 (109)
T ss_dssp             GGGCEEEEEEEEET
T ss_pred             cCCCEEEEEEecCC
Confidence            99999999998754

>d1ypzf1 b.1.1.1 (F:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=98.88  E-value=7e-08  Score=44.49  Aligned_cols=80  Identities=18%  Similarity=0.278  Sum_probs=51.9

Q ss_pred             eEEecCceeeecCCCcEEEEEEeeecc--cceeEEeecc----ceeEe---cc----------cceEEEEeccccceEEE
Q psy4613           3 VIHVPNQLVGAPIDTDVTLECYVEAYP--KSINYWVRDQ----GDMVI---SS----------ERYEVESISRSIFDFKM   63 (96)
Q Consensus         3 ~~~~~~~~~~~~~g~~~~l~c~~~~~~--~~~~~w~~~~----~~~~~---~~----------~~~~~~~~~~~~~~~~~   63 (96)
                      .+..++..+.+..|++++|.|...+..  ...+.|++..    .+.+.   ..          .++.+....   .....
T Consensus         3 kl~Q~~~sv~~~~G~svtL~C~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~r~~~s~~~---~~~~~   79 (120)
T d1ypzf1           3 KLEQPEISISRPRDETAQISCKVFIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNP---SASTS   79 (120)
T ss_dssp             SEECSCSEEEEETTSCEEEEEEECCGGGGGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECC---TTTEE
T ss_pred             CeEcCCCEEEecCCCcEEEEEEEecccccCCcccEEEeCCcccccccccccccccceeeecccccccccccc---ccccc
Confidence            456777788889999999999876543  3468898742    11111   00          111111111   11245


Q ss_pred             EEEEccCCCCCCeeEEEEEecC
Q psy4613          64 RLTIKKITKYDLGSYKCIAKNS   85 (96)
Q Consensus        64 ~l~i~~~~~~d~g~y~c~~~~~   85 (96)
                      .|.|.+++.+|++.|.|..+..
T Consensus        80 ~L~I~~l~~~Dsa~YyCA~~~~  101 (120)
T d1ypzf1          80 ILTIYSLEEEDEAIYYCSYGEG  101 (120)
T ss_dssp             EEEECSCCGGGCSEEEEEECCT
T ss_pred             cccccccccccceeEEEEEcCC
Confidence            6999999999999999987653

>d1xeda_ b.1.1.1 (A:) Polymeric-immunoglobulin receptor, PIGR {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Polymeric-immunoglobulin receptor, PIGR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.88  E-value=3.3e-08  Score=45.20  Aligned_cols=76  Identities=18%  Similarity=0.368  Sum_probs=46.8

Q ss_pred             cCceeeecCCCcEEEEEEeeecc---cceeEEeeccce----eE-e--------cccceEEEEeccccceEEEEEEEccC
Q psy4613           7 PNQLVGAPIDTDVTLECYVEAYP---KSINYWVRDQGD----MV-I--------SSERYEVESISRSIFDFKMRLTIKKI   70 (96)
Q Consensus         7 ~~~~~~~~~g~~~~l~c~~~~~~---~~~~~w~~~~~~----~~-~--------~~~~~~~~~~~~~~~~~~~~l~i~~~   70 (96)
                      .|..+.+.+|++++|.|......   ...+.|++....    .. .        ...+..+......   ....|.|.++
T Consensus         5 ~P~~V~~~~G~svtL~C~y~~~~~~~~~~~~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~---~~~sL~I~~l   81 (116)
T d1xeda_           5 GPEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPEN---GTFVVNIAQL   81 (116)
T ss_dssp             CCSEEEEETTCCEEEEEECCCCHHHHHSCEEEEEC-----CEEEEESSSCBCTTTTTTEEEEEETTT---TEEEEEECSC
T ss_pred             CCCEEEEcCCCCEEEEEEECCCCCccceeEEEEEcCCCCCcEEEEECcccccceecCCccEeeeCCC---CEEEEEEhhh
Confidence            34567788999999999875432   235678764211    11 0        0122222221111   2467999999


Q ss_pred             CCCCCeeEEEEEecC
Q psy4613          71 TKYDLGSYKCIAKNS   85 (96)
Q Consensus        71 ~~~d~g~y~c~~~~~   85 (96)
                      +..|+|.|.|.+...
T Consensus        82 ~~~DsG~Y~C~v~~~   96 (116)
T d1xeda_          82 SQDDSGRYKCGLGIN   96 (116)
T ss_dssp             CGGGCEEEEEEESCG
T ss_pred             CcCCCEEEEEEEEcC
Confidence            999999999988643

>d1olla1 b.1.1.4 (A:1-95) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.87  E-value=1.1e-08  Score=45.34  Aligned_cols=76  Identities=16%  Similarity=0.212  Sum_probs=48.8

Q ss_pred             CCeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEE
Q psy4613           1 HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKC   80 (96)
Q Consensus         1 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c   80 (96)
                      +|.+...+... +..|.+++|.|.... ....+.|++++..........       ........+.|.++...|.|.|.|
T Consensus         4 KPsLsa~P~~~-V~~G~~VTL~C~~~~-~~~~f~L~k~g~~~~~~~~~~-------~~~~~~a~F~i~~v~~~~~G~Y~C   74 (95)
T d1olla1           4 KPFIWAEPHFM-VPKEKQVTICCQGNY-GAVEYQLHFEGSLFAVDRPKP-------PERINKVKFYIPDMNSRMAGQYSC   74 (95)
T ss_dssp             CCEEEEESCSE-EETTCCEEEEEECCT-TCCEEEEEETTEEEEEECCSS-------CTTCCEEEEEESSCCGGGCEEEEE
T ss_pred             CCEEEeeCCCc-ccCCCcEEEEEecCC-CccEEEEEECCCCcceeEEcc-------CCCccEEEEEEeeeecCCCceEEE
Confidence            46676666544 679999999998643 344566777653322111000       001124578999999999999999


Q ss_pred             EEecC
Q psy4613          81 IAKNS   85 (96)
Q Consensus        81 ~~~~~   85 (96)
                      ...+.
T Consensus        75 ~y~~~   79 (95)
T d1olla1          75 IYRVG   79 (95)
T ss_dssp             EEEET
T ss_pred             EeCCC
Confidence            87654

>d1ogad1 b.1.1.1 (D:3-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.87  E-value=5.9e-08  Score=44.41  Aligned_cols=79  Identities=18%  Similarity=0.231  Sum_probs=51.9

Q ss_pred             EEecCceeeecCCCcEEEEEEeeecccceeEEeecc----ceeEe---------cccceEEEEeccccceEEEEEEEccC
Q psy4613           4 IHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQ----GDMVI---------SSERYEVESISRSIFDFKMRLTIKKI   70 (96)
Q Consensus         4 ~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~----~~~~~---------~~~~~~~~~~~~~~~~~~~~l~i~~~   70 (96)
                      +...+..+.+..|++++|.|...+ ....+.|++..    ..+..         ...+..+..   ........|.|.++
T Consensus         3 l~Q~P~~~~~~~G~svtl~C~~s~-~~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~L~I~~~   78 (115)
T d1ogad1           3 LEQSPQFLSIQEGENLTVYCNSSS-VFSSLQWYRQEPGEGPVLLVTVVTGGEVKKLKRLTFQF---GDARKDSSLHITAA   78 (115)
T ss_dssp             CEEECSEEEEETTCCEEEEEECSS-CCSCEEEEEECTTSCCEEEEEECSTTCEEEETTEEEEE---CTTSSEEEEEESSC
T ss_pred             eEeCCCeEEECCCCCEEEEEEECC-CCceEEEEecCCCCceeeeeeeeecccceeeccccccc---ccccceeeeeecCC
Confidence            455667788999999999998765 34578998742    11111         011222211   11113577999999


Q ss_pred             CCCCCeeEEEEEecCC
Q psy4613          71 TKYDLGSYKCIAKNSL   86 (96)
Q Consensus        71 ~~~d~g~y~c~~~~~~   86 (96)
                      +.+|+|.|.|..+...
T Consensus        79 ~~~Dsa~YyCa~~~~~   94 (115)
T d1ogad1          79 QPGDTGLYLCAGAGSQ   94 (115)
T ss_dssp             CGGGCEEEEEEEECTT
T ss_pred             CccceeeEcccccCCC
Confidence            9999999999987543

>d1f3rb2 b.1.1.1 (B:139-257) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.87  E-value=1.1e-08  Score=47.12  Aligned_cols=75  Identities=21%  Similarity=0.340  Sum_probs=49.9

Q ss_pred             EecCceeeecCCCcEEEEEEeeecccceeEEeeccc----eeEec---------ccceEEEEeccccceEEEEEEEccCC
Q psy4613           5 HVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQG----DMVIS---------SERYEVESISRSIFDFKMRLTIKKIT   71 (96)
Q Consensus         5 ~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~----~~~~~---------~~~~~~~~~~~~~~~~~~~l~i~~~~   71 (96)
                      ...+..+.+..|++++|.|.........+.|++...    ..+..         ..++....     ......|.|.+++
T Consensus         5 tQ~P~sv~~~~G~svtl~C~~s~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~fs~~~-----~~~~~~L~I~~~~   79 (119)
T d1f3rb2           5 TQSPSLLSASVGDRVTLSCKGSQNINNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSG-----SGTDYTLTISSLQ   79 (119)
T ss_dssp             CEETSEECCCTTCCEEEEEECSSCCBTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE-----EBTEEEEEECSCC
T ss_pred             EccCCEEEECCCCCEEEEEEeCCCCcceeEEeeeecccccEEEEEeeccccCceeeeecccC-----CCCEEEEEcccCc
Confidence            345667788999999999987665556789997421    11110         11222111     0123579999999


Q ss_pred             CCCCeeEEEEEec
Q psy4613          72 KYDLGSYKCIAKN   84 (96)
Q Consensus        72 ~~d~g~y~c~~~~   84 (96)
                      ..|++.|.|..+.
T Consensus        80 ~~DsavYyCa~~~   92 (119)
T d1f3rb2          80 PEDVATYFCYQYN   92 (119)
T ss_dssp             GGGCSEEEEEEES
T ss_pred             cCCCeEEEeeccC
Confidence            9999999998764

>d1hxma1 b.1.1.1 (A:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=98.87  E-value=1.3e-07  Score=43.53  Aligned_cols=80  Identities=19%  Similarity=0.247  Sum_probs=53.3

Q ss_pred             eEEecCceeeecCCCcEEEEEEeeecc--cceeEEeecc----ceeEec---------ccceEEEEeccccceEEEEEEE
Q psy4613           3 VIHVPNQLVGAPIDTDVTLECYVEAYP--KSINYWVRDQ----GDMVIS---------SERYEVESISRSIFDFKMRLTI   67 (96)
Q Consensus         3 ~~~~~~~~~~~~~g~~~~l~c~~~~~~--~~~~~w~~~~----~~~~~~---------~~~~~~~~~~~~~~~~~~~l~i   67 (96)
                      .+...+..+.+..|++++|.|...+..  ...+.|++..    .+++..         .+++........   ....|.|
T Consensus         3 ~vv~~~~sv~v~~G~~vtL~C~~s~~~~~~~~~~WyrQ~pg~~~~~l~~~~~~~~~~~~~r~~~s~~~~~---~~~~L~i   79 (120)
T d1hxma1           3 ELVPEHQTVPVSIGVPATLRCSMKGEAIGNYYINWYRKTQGNTMTFIYREKDIYGPGFKDNFQGDIDIAK---NLAVLKI   79 (120)
T ss_dssp             CEEESCSEEEEETTCCEEEEEEECSSCGGGSEEEEEEEESSSCSEEEEETTTEECTTTTTTEEEEEEGGG---TEEEEEE
T ss_pred             eEeccCCCEEECCCCCEEEEEEEeccCccCCcCeEEEccccccceeeeccccceeecccccceeeccccc---cceeccc
Confidence            355566778899999999999987643  3468998732    222211         123333322111   2478999


Q ss_pred             ccCCCCCCeeEEEEEecC
Q psy4613          68 KKITKYDLGSYKCIAKNS   85 (96)
Q Consensus        68 ~~~~~~d~g~y~c~~~~~   85 (96)
                      ..++.+|+|.|.|..+..
T Consensus        80 ~~~~~~Dsa~YyCA~~~~   97 (120)
T d1hxma1          80 LAPSERDEGSYYCACDTL   97 (120)
T ss_dssp             SSCCGGGCEEEEEEEECC
T ss_pred             ccccccCCceeecCcccC
Confidence            999999999999987653

>d1kgce1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.84  E-value=3.3e-08  Score=45.02  Aligned_cols=76  Identities=18%  Similarity=0.268  Sum_probs=49.1

Q ss_pred             EEecCceeeecCCCcEEEEEEeeecccceeEEeecc--c--eeEe-c------------ccceEEEEeccccceEEEEEE
Q psy4613           4 IHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQ--G--DMVI-S------------SERYEVESISRSIFDFKMRLT   66 (96)
Q Consensus         4 ~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~--~--~~~~-~------------~~~~~~~~~~~~~~~~~~~l~   66 (96)
                      +...|..+.+..|++++|.|.... ....+.|++..  .  .+.. .            ..++....  ...  ....|.
T Consensus         2 VtQ~P~~~~~~~G~svtl~C~~~~-~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~L~   76 (112)
T d1kgce1           2 VSQSPRYKVAKRGQDVALRCDPIS-GHVSLFWYQQALGQGPEFLTYFQNEAQLDKSGLPSDRFFAER--PEG--SVSTLK   76 (112)
T ss_dssp             CEEECSEEEEETTCCEEEEEECCT-TCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEEC--TTS--SCEEEE
T ss_pred             eEECCCeEEECCCCCEEEEEEECC-CCCEEEeeeeecccceEEeeeeccCcccccCCCCCCceeeEC--CcC--CEEEEE
Confidence            456677788999999999998543 44578998742  1  1111 0            01111110  000  236799


Q ss_pred             EccCCCCCCeeEEEEEec
Q psy4613          67 IKKITKYDLGSYKCIAKN   84 (96)
Q Consensus        67 i~~~~~~d~g~y~c~~~~   84 (96)
                      |.+++.+|++.|.|..+.
T Consensus        77 I~~~~~~Dsa~YyCa~~~   94 (112)
T d1kgce1          77 IQRTQQEDSAVYLCASSL   94 (112)
T ss_dssp             ESSCCGGGCEEEEEEEES
T ss_pred             ECCCCcCCCEEEEEeeeC
Confidence            999999999999999864

>d1nfde1 b.1.1.1 (E:2-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=98.83  E-value=2.1e-08  Score=45.44  Aligned_cols=75  Identities=21%  Similarity=0.450  Sum_probs=49.7

Q ss_pred             EEecCceeeecCCCcEEEEEEeeecccceeEEeecc--c--eeEec---------ccceEEEEeccccceEEEEEEEccC
Q psy4613           4 IHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQ--G--DMVIS---------SERYEVESISRSIFDFKMRLTIKKI   70 (96)
Q Consensus         4 ~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~--~--~~~~~---------~~~~~~~~~~~~~~~~~~~l~i~~~   70 (96)
                      +.+|+ .+.+.+|++++|.|.........+.|++..  .  +++..         .+++......     ....|.|.++
T Consensus         3 ltQP~-s~~~~~G~svtl~C~~~~~~~~~i~WYrQ~~g~~p~~l~y~~~~~~~~~~~rf~~~~~~-----~~~~L~I~~l   76 (108)
T d1nfde1           3 LIQPS-SASVTVGETVKITCSGDQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSG-----TTATLTISGA   76 (108)
T ss_dssp             EECCS-EEEEETTSCCCEEEEETTGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEET-----TEEEEEETTC
T ss_pred             eECCC-eeEECCCCCEEEEEECCCCCCccEEEEecccccceeeeccccccccccccceeeecCCC-----CEeeeeEcCc
Confidence            44554 677899999999998765555678998742  1  11210         1123222111     2467899999


Q ss_pred             CCCCCeeEEEEEec
Q psy4613          71 TKYDLGSYKCIAKN   84 (96)
Q Consensus        71 ~~~d~g~y~c~~~~   84 (96)
                      +.+|++.|.|..+.
T Consensus        77 ~~~Dsa~YyCA~~~   90 (108)
T d1nfde1          77 QPEDEAAYYCLSSY   90 (108)
T ss_dssp             CGGGCSEEEEEEEE
T ss_pred             cccCCceEEEEeec
Confidence            99999999998764

>d1n4xl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=98.83  E-value=7.4e-08  Score=43.96  Aligned_cols=77  Identities=14%  Similarity=0.331  Sum_probs=50.8

Q ss_pred             EEecCceeeecCCCcEEEEEEeeecc-----cceeEEeecc----ceeEec---------ccceEEEEeccccceEEEEE
Q psy4613           4 IHVPNQLVGAPIDTDVTLECYVEAYP-----KSINYWVRDQ----GDMVIS---------SERYEVESISRSIFDFKMRL   65 (96)
Q Consensus         4 ~~~~~~~~~~~~g~~~~l~c~~~~~~-----~~~~~w~~~~----~~~~~~---------~~~~~~~~~~~~~~~~~~~l   65 (96)
                      +...|..+.+.+|++++|.|...+..     ...+.|++..    ..++..         ..++....     ......|
T Consensus         5 ltQ~P~s~~~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~fs~~~-----~~~~~~L   79 (113)
T d1n4xl_           5 MTQTPLYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSG-----SGTDFTL   79 (113)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCCCTTSCCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE-----CSSEEEE
T ss_pred             EeCcCCEEEECCCCCEEEEEEeccccccCCCceEeEEEecCCCCccEEEEEecCCCccccCCCeeeec-----cCCcccC
Confidence            55667788899999999999875422     2468898742    111110         11222211     1134689


Q ss_pred             EEccCCCCCCeeEEEEEecC
Q psy4613          66 TIKKITKYDLGSYKCIAKNS   85 (96)
Q Consensus        66 ~i~~~~~~d~g~y~c~~~~~   85 (96)
                      .|.+++.+|++.|.|..+..
T Consensus        80 ~I~~~~~~DsavYyCa~~~~   99 (113)
T d1n4xl_          80 KISRVEAEDLGIYYCFQGSH   99 (113)
T ss_dssp             EESSCCGGGCEEEEEEECSS
T ss_pred             ccCCCCcccCEEEEEEECCC
Confidence            99999999999999987653

>d1ac6a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.82  E-value=3.2e-08  Score=44.95  Aligned_cols=79  Identities=15%  Similarity=0.227  Sum_probs=52.2

Q ss_pred             EEecCceeeecCCCcEEEEEEeeecccceeEEeecc----ceeEe--c-------ccceEEEEeccccceEEEEEEEccC
Q psy4613           4 IHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQ----GDMVI--S-------SERYEVESISRSIFDFKMRLTIKKI   70 (96)
Q Consensus         4 ~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~----~~~~~--~-------~~~~~~~~~~~~~~~~~~~l~i~~~   70 (96)
                      +...+..+.+..|++++|.|.........+.|++..    ..++.  .       ..++......   ......|.|.++
T Consensus         3 VtQ~p~~~~~~~G~~vtl~C~~~~~~~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~f~~~~~~---~~~~~~L~i~~~   79 (110)
T d1ac6a_           3 VTQTEGQVALSEEDFLTIHCNYSASGYPALFWYVQYPGEGPQFLFRASRDKEKGSSRGFEATYNK---EATSFHLQKASV   79 (110)
T ss_dssp             EEECCSEEEEETTEEEEECEEEECSSCCEEEEEEECTTSCCEEEEEECSTTCEEEETTEEEECBT---TTTBCCEEEEEE
T ss_pred             eEeCCCeEEECCCCCEEEEEEecCCCCcceEEEEcCCCCceEEeeeeeeecccCCCCceeeeecC---CCCEEeeeecCc
Confidence            566778888999999999998776556679998742    11111  0       1111111110   112356889999


Q ss_pred             CCCCCeeEEEEEecC
Q psy4613          71 TKYDLGSYKCIAKNS   85 (96)
Q Consensus        71 ~~~d~g~y~c~~~~~   85 (96)
                      +.+|++.|.|..+..
T Consensus        80 ~~~Dsa~YyCA~~~~   94 (110)
T d1ac6a_          80 QESDSAVYYCALSGG   94 (110)
T ss_dssp             CGGGCEEEEEEEEET
T ss_pred             CcCCCcccceeecCC
Confidence            999999999987653

>d2gsia1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=98.82  E-value=5.9e-08  Score=44.15  Aligned_cols=77  Identities=14%  Similarity=0.252  Sum_probs=50.2

Q ss_pred             EEecCceeeecCCCcEEEEEEeeec----ccceeEEeecc--ce--eEec---------ccceEEEEeccccceEEEEEE
Q psy4613           4 IHVPNQLVGAPIDTDVTLECYVEAY----PKSINYWVRDQ--GD--MVIS---------SERYEVESISRSIFDFKMRLT   66 (96)
Q Consensus         4 ~~~~~~~~~~~~g~~~~l~c~~~~~----~~~~~~w~~~~--~~--~~~~---------~~~~~~~~~~~~~~~~~~~l~   66 (96)
                      +...|..+.+.+|++++|.|.....    ....+.|++..  ..  ....         ..++.....     .....|.
T Consensus         4 ltQsP~s~s~~~G~svtL~C~~s~~~~~~~~~~i~WYrQ~pg~~~~~li~~~~~~~~g~~~rfs~~~~-----~~~~~L~   78 (111)
T d2gsia1           4 LTQSPASLAVSLGQPATISCGASKSVRTSGYSYMDWNQQKPGQPPRRLIYLVSNLESGVPARFSGSGS-----GTDFTLN   78 (111)
T ss_dssp             EEEECSEEEEETTSCEEEEEEESSCCCCSSSCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEE-----TTEEEEE
T ss_pred             eEeeCCEEEECCCCCEEEEEEECCCCccCCccceEEEEECCCCccEEEEEccCccCCCcCCcEEEecC-----CCchhcc
Confidence            4566677889999999999986532    23358898742  11  1110         123322211     1246799


Q ss_pred             EccCCCCCCeeEEEEEecC
Q psy4613          67 IKKITKYDLGSYKCIAKNS   85 (96)
Q Consensus        67 i~~~~~~d~g~y~c~~~~~   85 (96)
                      |.+++.+|++.|.|..+..
T Consensus        79 I~~~~~~DsA~YyCa~~~~   97 (111)
T d2gsia1          79 IHPVEEEDAATYYCSHIRE   97 (111)
T ss_dssp             ESSCCGGGCEEEEEEECSS
T ss_pred             cccccccCCceEEEEECCC
Confidence            9999999999999987754

>d1mjul1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=98.82  E-value=9.3e-08  Score=43.55  Aligned_cols=76  Identities=16%  Similarity=0.368  Sum_probs=49.6

Q ss_pred             EEecCceeeecCCCcEEEEEEeeec-----ccceeEEeecc--c--ee-Eec--------ccceEEEEeccccceEEEEE
Q psy4613           4 IHVPNQLVGAPIDTDVTLECYVEAY-----PKSINYWVRDQ--G--DM-VIS--------SERYEVESISRSIFDFKMRL   65 (96)
Q Consensus         4 ~~~~~~~~~~~~g~~~~l~c~~~~~-----~~~~~~w~~~~--~--~~-~~~--------~~~~~~~~~~~~~~~~~~~l   65 (96)
                      +..++..+.+.+|++++|.|...+.     ....+.|++..  .  .+ +..        ..++....     ......|
T Consensus         4 lTQ~p~slsv~~G~svtL~C~~s~~~~~~~~~~~i~WYrq~~g~~~~~liy~~~~~~~~~~~r~~~~~-----s~~~~~L   78 (112)
T d1mjul1           4 MTQAAPSVPVTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSG-----SGTAFTL   78 (112)
T ss_dssp             EECCCSEEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEE-----CSSEEEE
T ss_pred             eEecCCEEEECCCCCEEEEEEECCCCccCCCCceeEEEECCCCCcEEEEEEeCCcccCCCCCcEEeec-----CCCEEEE
Confidence            4566778888999999999987542     24468898642  1  11 111        11222111     1134679


Q ss_pred             EEccCCCCCCeeEEEEEec
Q psy4613          66 TIKKITKYDLGSYKCIAKN   84 (96)
Q Consensus        66 ~i~~~~~~d~g~y~c~~~~   84 (96)
                      .|.+++.+|++.|.|....
T Consensus        79 ~Is~~~~~DsAvYyCa~~~   97 (112)
T d1mjul1          79 RISRVEAEDVGVYYCLQHL   97 (112)
T ss_dssp             EESSCCGGGCEEEEEEECS
T ss_pred             EECCccccCCceEEEEeCC
Confidence            9999999999999997654

>d2rhea_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=98.82  E-value=3.2e-08  Score=45.26  Aligned_cols=74  Identities=22%  Similarity=0.329  Sum_probs=49.0

Q ss_pred             EecCceeeecCCCcEEEEEEeeecc--cceeEEeeccc----eeEec---------ccceEEEEeccccceEEEEEEEcc
Q psy4613           5 HVPNQLVGAPIDTDVTLECYVEAYP--KSINYWVRDQG----DMVIS---------SERYEVESISRSIFDFKMRLTIKK   69 (96)
Q Consensus         5 ~~~~~~~~~~~g~~~~l~c~~~~~~--~~~~~w~~~~~----~~~~~---------~~~~~~~~~~~~~~~~~~~l~i~~   69 (96)
                      ..++ .+.+.+|++++|.|...+..  ...+.|++...    ..+..         .+++......     ....|.|.+
T Consensus         5 tQ~p-s~~v~~G~svtL~C~~s~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~-----~~~~L~I~~   78 (114)
T d2rhea_           5 TQPP-SASGTPGQRVTISCTGSATDIGSNSVIWYQQVPGKAPKLLIYYNDLLPSGVSDRFSASKSG-----TSASLAISG   78 (114)
T ss_dssp             BCCS-EEEECTTCCEEEEEECCTTTTTTSCEEEEECCTTSCCEEEEBTTTBCCTTCCTTEEEEEET-----TEEEEEESS
T ss_pred             ccCC-cEEeCCCCCEEEEEEECCccccCCcccceeeecccceEEEEEEeeeeccCCCCcceecCCC-----CeeeeEecc
Confidence            4454 57788999999999976543  45788997421    11110         1122222111     246799999


Q ss_pred             CCCCCCeeEEEEEec
Q psy4613          70 ITKYDLGSYKCIAKN   84 (96)
Q Consensus        70 ~~~~d~g~y~c~~~~   84 (96)
                      ++.+|++.|.|..+.
T Consensus        79 v~~~DsA~YyCA~~~   93 (114)
T d2rhea_          79 LESEDEADYYCAAWN   93 (114)
T ss_dssp             CCGGGCEEEEEEEEE
T ss_pred             cCcccCceEEEeecC
Confidence            999999999999874

>d2esve1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.81  E-value=7.4e-08  Score=43.79  Aligned_cols=76  Identities=18%  Similarity=0.264  Sum_probs=48.9

Q ss_pred             EEecCceeeecCCCcEEEEEEeeecccceeEEeecc--c--eeEec-------------ccceEEEEeccccceEEEEEE
Q psy4613           4 IHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQ--G--DMVIS-------------SERYEVESISRSIFDFKMRLT   66 (96)
Q Consensus         4 ~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~--~--~~~~~-------------~~~~~~~~~~~~~~~~~~~l~   66 (96)
                      +...|..+.+..|++++|.|.... ....+.|++..  .  ..+..             ..++.....  .  .....|.
T Consensus         2 VtQ~P~~~~~~~G~svtl~C~~~~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~--~--~~~~~L~   76 (111)
T d2esve1           2 VTQFPSHSVIEKGQTVTLRCDPIS-GHDNLYWYRRVMGKEIKFLLHFVKESKQDESGMPNNRFLAERT--G--GTYSTLK   76 (111)
T ss_dssp             CEEECSEEEEETTCCEEEEEECCT-TCSEEEEEEEETTSCEEEEEEEETTEEEECTTCCSTTEEEECT--T--SSSEEEE
T ss_pred             cEECCCEEEECCCCCEEEEEEECC-CCceEEEEEEccCCcceecceecccCcccccCCCCccEEEEcC--C--CCEEEEE
Confidence            456677788999999999998544 44578999742  1  11110             011111100  0  0235799


Q ss_pred             EccCCCCCCeeEEEEEec
Q psy4613          67 IKKITKYDLGSYKCIAKN   84 (96)
Q Consensus        67 i~~~~~~d~g~y~c~~~~   84 (96)
                      |.+++..|++.|.|....
T Consensus        77 i~~~~~~Dsa~YyCa~~~   94 (111)
T d2esve1          77 VQPAELEDSGVYFCASSQ   94 (111)
T ss_dssp             ESSCCGGGCEEEEEEEES
T ss_pred             ECCcccCCCceEEEeeeC
Confidence            999999999999998664

>d1q9ra1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]

Probab=98.81  E-value=6.8e-08  Score=44.08  Aligned_cols=77  Identities=21%  Similarity=0.366  Sum_probs=49.9

Q ss_pred             eEEecCceeeecCCCcEEEEEEeeec------ccceeEEeecc----ceeEec---------ccceEEEEeccccceEEE
Q psy4613           3 VIHVPNQLVGAPIDTDVTLECYVEAY------PKSINYWVRDQ----GDMVIS---------SERYEVESISRSIFDFKM   63 (96)
Q Consensus         3 ~~~~~~~~~~~~~g~~~~l~c~~~~~------~~~~~~w~~~~----~~~~~~---------~~~~~~~~~~~~~~~~~~   63 (96)
                      .+...|..+.+.+|+++.|.|...+.      ....+.|++..    ..++..         ..++....   +  ....
T Consensus         3 ~~tQ~P~~v~~~~G~svtL~C~~s~~~~~~~~~~~~~~WYrq~~g~~p~ll~~~~~~~~~~~~~~~s~~~---s--~~~~   77 (113)
T d1q9ra1           3 VMSQSPSSLAVSAGEKVTMSCKSSQSLLNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSG---S--GTDF   77 (113)
T ss_dssp             CEEEECSEEEEETTSCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEE---E--TTEE
T ss_pred             CEEccCCEEEECCCCCEEEEEEECCCcccCCCCCcceEEEecCCCCCCEEEEecccccCCCCCccEEEeC---C--CCeE
Confidence            35567778889999999999986532      22458898742    111110         11222111   0  1235


Q ss_pred             EEEEccCCCCCCeeEEEEEec
Q psy4613          64 RLTIKKITKYDLGSYKCIAKN   84 (96)
Q Consensus        64 ~l~i~~~~~~d~g~y~c~~~~   84 (96)
                      .|.|.+++..|+|.|.|..+.
T Consensus        78 ~L~I~~l~~~Dsa~YyCA~~~   98 (113)
T d1q9ra1          78 TLTITSVQAEDLAVYYCKQSY   98 (113)
T ss_dssp             EEEESSCCGGGCEEEEEEECS
T ss_pred             eEEecccccCCCeEEEecccC
Confidence            799999999999999998764

>d2ntsp1 b.1.1.1 (P:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.81  E-value=8.9e-08  Score=43.62  Aligned_cols=81  Identities=11%  Similarity=0.147  Sum_probs=49.2

Q ss_pred             EEecCceeeecCCCcEEEEEEeeecccceeEEeec--ccee--Ee--cccceEEEEecccc------ceEEEEEEEccCC
Q psy4613           4 IHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRD--QGDM--VI--SSERYEVESISRSI------FDFKMRLTIKKIT   71 (96)
Q Consensus         4 ~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~--~~~~--~~--~~~~~~~~~~~~~~------~~~~~~l~i~~~~   71 (96)
                      +...+..+.+..|++++|.|.... ....+.|++.  +..+  +.  ..............      ......|.|.+++
T Consensus         2 VtQ~P~~~~~~~G~svtl~C~~~~-~~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~   80 (113)
T d2ntsp1           2 VTQTPRYLIKTRGQQVTLSCSPIS-GHRSVSWYQQTPGQGLQFLFEYFNETQRNKGNFPGRFSGRQFSNSRSEMNVSTLE   80 (113)
T ss_dssp             CEEECSEEEEETTCCEEEEEECST-TCCEEEEEEEETTTEEEEEEEEETTEEEEECSCCTTEEEEECTTSCEEEEECSCC
T ss_pred             eEeCCCeEEECCCCCEEEEEEECC-CCCEEEEEEeecccceEeeeeecccccccccccccceeeccCcCCeeEEEECCCC
Confidence            345567788999999999998654 3457899973  2211  11  00000000000000      0023579999999


Q ss_pred             CCCCeeEEEEEecC
Q psy4613          72 KYDLGSYKCIAKNS   85 (96)
Q Consensus        72 ~~d~g~y~c~~~~~   85 (96)
                      .+|++.|.|.....
T Consensus        81 ~~Dsa~YyCA~~~~   94 (113)
T d2ntsp1          81 LGDSALYLCASSLA   94 (113)
T ss_dssp             GGGCEEEEEEEESS
T ss_pred             cccceeeeeeeeCC
Confidence            99999999988753

>d1j05a_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=98.81  E-value=5.6e-08  Score=44.24  Aligned_cols=77  Identities=14%  Similarity=0.332  Sum_probs=49.9

Q ss_pred             EEecCceeeecCCCcEEEEEEeee----cccceeEEeecc--c--eeEec---------ccceEEEEeccccceEEEEEE
Q psy4613           4 IHVPNQLVGAPIDTDVTLECYVEA----YPKSINYWVRDQ--G--DMVIS---------SERYEVESISRSIFDFKMRLT   66 (96)
Q Consensus         4 ~~~~~~~~~~~~g~~~~l~c~~~~----~~~~~~~w~~~~--~--~~~~~---------~~~~~~~~~~~~~~~~~~~l~   66 (96)
                      +...|..+.+.+|++++|.|....    .....+.|++..  .  .++..         ..+.....     ......|.
T Consensus         4 ltQsP~~l~v~~G~svtl~C~~s~s~~~~~~~~~~WYrq~~g~~p~~liy~~~~~~~~~~~~~~~~~-----~~~~~~L~   78 (111)
T d1j05a_           4 LTQSPASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTG-----SRTDFTLI   78 (111)
T ss_dssp             EEEECSEEECCTTSCEEEEEEESSCCBSSSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEC-----SSSEEEEE
T ss_pred             EEccCCEEEECCCCCEEEEEEeccCCccCCceeEEEEEccCCCCCEEEEEeeccccCCCCCcEEEec-----CCCEEEEE
Confidence            456677788899999999998643    123358898742  1  11110         01111111     11357899


Q ss_pred             EccCCCCCCeeEEEEEecC
Q psy4613          67 IKKITKYDLGSYKCIAKNS   85 (96)
Q Consensus        67 i~~~~~~d~g~y~c~~~~~   85 (96)
                      |.+++.+|++.|.|..+..
T Consensus        79 I~~~~~~Dsa~YyCa~~~~   97 (111)
T d1j05a_          79 IDPVEADDVATYYCQQTNE   97 (111)
T ss_dssp             ESSCCGGGCEEEEEEECSS
T ss_pred             EcccccccCccEEEeecCC
Confidence            9999999999999987754

>d2esvd1 b.1.1.1 (D:4-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.80  E-value=4.4e-08  Score=44.51  Aligned_cols=75  Identities=19%  Similarity=0.244  Sum_probs=47.8

Q ss_pred             ecCceeeecCCCcEEEEEEeeec-ccceeEEeecc--c--eeEec-------ccceEEEEeccccceEEEEEEEccCCCC
Q psy4613           6 VPNQLVGAPIDTDVTLECYVEAY-PKSINYWVRDQ--G--DMVIS-------SERYEVESISRSIFDFKMRLTIKKITKY   73 (96)
Q Consensus         6 ~~~~~~~~~~g~~~~l~c~~~~~-~~~~~~w~~~~--~--~~~~~-------~~~~~~~~~~~~~~~~~~~l~i~~~~~~   73 (96)
                      .|+ .+.+.+|++++|.|..... ....+.|++..  .  .++..       ..+......   .......|.|.+++.+
T Consensus         4 QP~-svsv~~G~~vtl~C~~s~~~~~~~l~WYrq~~g~~~~~i~~~~~~~~~~~~~~~~~~---~~~~~~~L~I~~~~~~   79 (110)
T d2esvd1           4 QPP-SMDCAEGRAANLPCNHSTISGNEYVYWYRQIHSQGPQYIIHGLKNNETNEMASLIIT---EDRKSSTLILPHATLR   79 (110)
T ss_dssp             CCS-EEEEETTSCEEEEEECTTCCTTEEEEEEEECTTSCCEEEEEESSSCEECSSCEEEEC---TTCSEEEEEESSCCGG
T ss_pred             cCC-EEEECCCCCEEEEEEEcCCCCCCeEEEEEECCCCccEEeeeeeceecccccceeeec---ccCCeeeehhcccccC
Confidence            443 5778899999999987543 34568898742  1  11110       111111111   1113577999999999


Q ss_pred             CCeeEEEEEec
Q psy4613          74 DLGSYKCIAKN   84 (96)
Q Consensus        74 d~g~y~c~~~~   84 (96)
                      |+|.|.|.+..
T Consensus        80 Dsa~YyCa~~~   90 (110)
T d2esvd1          80 DTAVYYCIVVR   90 (110)
T ss_dssp             GCEEEEEEEEE
T ss_pred             CceEEEEEEeC
Confidence            99999998764

>d1ogae1 b.1.1.1 (E:5-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.79  E-value=4.5e-08  Score=44.72  Aligned_cols=81  Identities=17%  Similarity=0.283  Sum_probs=50.6

Q ss_pred             EEecCceeeecCCCcEEEEEEeeecccceeEEeeccc----eeEe---cccceEEEEecc-----ccceEEEEEEEccCC
Q psy4613           4 IHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQG----DMVI---SSERYEVESISR-----SIFDFKMRLTIKKIT   71 (96)
Q Consensus         4 ~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~----~~~~---~~~~~~~~~~~~-----~~~~~~~~l~i~~~~   71 (96)
                      +...+..+.+.+|++++|.|... .....+.|++...    .+..   ............     ........|.|.+++
T Consensus         2 VtQsP~~~~~~~G~svtl~C~~s-~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~   80 (114)
T d1ogae1           2 ITQSPKYLFRKEGQNVTLSCEQN-LNHDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSREKKESFPLTVTSAQ   80 (114)
T ss_dssp             EECSCSEEEEETTCCEEECCEEC-SCCSEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCSSTTBCCEEECSCC
T ss_pred             cEEcCCeEEEcCCCCEEEEEEEe-cCCCcEEEEeeccccCCcceeeeeeeeccccccCCCceEEEcccCCeEEEEECcCC
Confidence            56677788899999999999975 3456889997421    1111   000000000000     000123569999999


Q ss_pred             CCCCeeEEEEEecC
Q psy4613          72 KYDLGSYKCIAKNS   85 (96)
Q Consensus        72 ~~d~g~y~c~~~~~   85 (96)
                      .+|++.|.|..+..
T Consensus        81 ~~DSa~YyCa~~~~   94 (114)
T d1ogae1          81 KNPTAFYLCASSSR   94 (114)
T ss_dssp             SCCCEEEEEEEESS
T ss_pred             cCCceeEEEeeccC
Confidence            99999999988753

>d1cd0a_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.79  E-value=1.2e-07  Score=43.10  Aligned_cols=78  Identities=21%  Similarity=0.317  Sum_probs=50.9

Q ss_pred             EEecCceeeecCCCcEEEEEEeeecc--cceeEEeecc--cee--Ee---------cccceEEEEeccccceEEEEEEEc
Q psy4613           4 IHVPNQLVGAPIDTDVTLECYVEAYP--KSINYWVRDQ--GDM--VI---------SSERYEVESISRSIFDFKMRLTIK   68 (96)
Q Consensus         4 ~~~~~~~~~~~~g~~~~l~c~~~~~~--~~~~~w~~~~--~~~--~~---------~~~~~~~~~~~~~~~~~~~~l~i~   68 (96)
                      +..| ..+.+.+|++++|.|...+..  ...+.|++..  ..+  ..         ..++.........   ....|.|.
T Consensus         4 ltQP-~s~sv~~G~svtL~C~~s~~~~~~~~i~WyrQ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~L~i~   79 (111)
T d1cd0a_           4 LNQP-HSVSESPGKTVTISCTRSSGNIDSNYVQWYQQRPGSAPITVIYEDNQRPSGVPDRFAGSIDRSS---NSASLTIS   79 (111)
T ss_dssp             EECC-SEEEECTTSCEEEEEEESSSCGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTT---TEEEEEEC
T ss_pred             EecC-CeeEECCCCCEEEEEEECCCCccCceEEEeeeccCceeEeeeccccccCcccCCceeEeecCCC---Cccccccc
Confidence            4555 478899999999999976543  3468898742  111  10         1123333221111   34689999


Q ss_pred             cCCCCCCeeEEEEEecC
Q psy4613          69 KITKYDLGSYKCIAKNS   85 (96)
Q Consensus        69 ~~~~~d~g~y~c~~~~~   85 (96)
                      +++.+|++.|.|..+..
T Consensus        80 ~l~~~Dsa~YyCA~~~~   96 (111)
T d1cd0a_          80 GLKTEDEADYYCQSYDA   96 (111)
T ss_dssp             SCCGGGCEEEEEEEEET
T ss_pred             cCCcccCcEEEEeeccC
Confidence            99999999999987653

>d1hkfa_ b.1.1.1 (A:) NK cell activating receptor NKP44 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: NK cell activating receptor NKP44
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.77  E-value=2.6e-07  Score=41.67  Aligned_cols=75  Identities=13%  Similarity=0.227  Sum_probs=47.4

Q ss_pred             CceeeecCCCcEEEEEEeeecc--cceeEEeeccc--e--eE-e--------cccceEEEEeccccceEEEEEEEccCCC
Q psy4613           8 NQLVGAPIDTDVTLECYVEAYP--KSINYWVRDQG--D--MV-I--------SSERYEVESISRSIFDFKMRLTIKKITK   72 (96)
Q Consensus         8 ~~~~~~~~g~~~~l~c~~~~~~--~~~~~w~~~~~--~--~~-~--------~~~~~~~~~~~~~~~~~~~~l~i~~~~~   72 (96)
                      ++.+.+..|++++|.|......  ...+.|++...  .  .+ .        ...+.........   ....|.|.+++.
T Consensus         3 ~~~v~~~~G~svtl~C~~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~---~~~~L~I~~l~~   79 (108)
T d1hkfa_           3 AQVLQSVAGQTLTVRCQYPPTGSLYEKKGWCKEASALVCIRLVTSSKPRTMAWTSRFTIWDDPDA---GFFTVTMTDLRE   79 (108)
T ss_dssp             CEEEEECTTCCEEEEEECCCCTTCCCEEEEEEEEETTEEEEEEEECSTTCCBCSTTEEEEEETTT---TEEEEEECSCCG
T ss_pred             CEEEEEcCCCCEEEEEEECCCCCCCCEEEEEEeCCCCCcEEeeeccCccccceeeeEeeeeeCCC---CEEEEEEhhhCC
Confidence            3557788999999999875433  23567987421  1  11 0        1122222221111   246799999999


Q ss_pred             CCCeeEEEEEecC
Q psy4613          73 YDLGSYKCIAKNS   85 (96)
Q Consensus        73 ~d~g~y~c~~~~~   85 (96)
                      .|+|.|.|.+...
T Consensus        80 ~DsG~Y~C~v~~~   92 (108)
T d1hkfa_          80 EDSGHYWCRIYRP   92 (108)
T ss_dssp             GGCEEEEEEEECT
T ss_pred             CCCEEEEEEEecC
Confidence            9999999988754

>d1nfdb1 b.1.1.1 (B:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.74  E-value=6.9e-08  Score=44.05  Aligned_cols=83  Identities=13%  Similarity=0.166  Sum_probs=51.1

Q ss_pred             CeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccc----eeEe--cccceEEEEeccccc------eEEEEEEEcc
Q psy4613           2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQG----DMVI--SSERYEVESISRSIF------DFKMRLTIKK   69 (96)
Q Consensus         2 p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~----~~~~--~~~~~~~~~~~~~~~------~~~~~l~i~~   69 (96)
                      +.+...|..+.+.+|++++|.|.... ....+.|++...    ..+.  ..............+      .....|.|.+
T Consensus         2 ~~VtQ~P~~~~~~~G~~v~l~C~~~~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~   80 (113)
T d1nfdb1           2 SGVVQSPRHIIKEKGGRSVLTCIPIS-GHSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQFDDYHSEMNMSA   80 (113)
T ss_dssp             CSCEEECSEEEEETTCCCEEEEECCT-TCCEEEEEEBCSSCCCEEEEEEETTTEEEESSCCTTCCCEECTTSCEEEECCS
T ss_pred             CCEEEcCCEEEEeCCCCEEEEEEeCC-CCCEEEEEEECCcCCCcceeeeeecccccCCCcccceeeEcCCCCeEEEEecc
Confidence            45566777788999999999998654 345789997531    1110  000100000000000      0235789999


Q ss_pred             CCCCCCeeEEEEEecC
Q psy4613          70 ITKYDLGSYKCIAKNS   85 (96)
Q Consensus        70 ~~~~d~g~y~c~~~~~   85 (96)
                      ++.+|++.|.|.....
T Consensus        81 ~~~~Dsa~YyCa~~~~   96 (113)
T d1nfdb1          81 LELEDSAMYFCASSLR   96 (113)
T ss_dssp             CCGGGCEEECEEEESS
T ss_pred             cCcCCceeEEEEeecC
Confidence            9999999999987643

>d1ncwl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=98.73  E-value=2.1e-07  Score=42.35  Aligned_cols=77  Identities=17%  Similarity=0.365  Sum_probs=48.9

Q ss_pred             EEecCceeeecCCCcEEEEEEeeec-----ccceeEEeecc--ce--eEec---------ccceEEEEeccccceEEEEE
Q psy4613           4 IHVPNQLVGAPIDTDVTLECYVEAY-----PKSINYWVRDQ--GD--MVIS---------SERYEVESISRSIFDFKMRL   65 (96)
Q Consensus         4 ~~~~~~~~~~~~g~~~~l~c~~~~~-----~~~~~~w~~~~--~~--~~~~---------~~~~~~~~~~~~~~~~~~~l   65 (96)
                      +...|..+.+.+|++++|.|.....     ....+.|++..  ..  .+..         .+++.....     .....|
T Consensus         4 lTQsP~sls~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~pg~~~~~l~~~~~~~~~g~~~~fs~~~~-----~~~~~L   78 (112)
T d1ncwl1           4 MTQSPKTISVTIGQPASISCKSSQRLLNSNGKTFLNWLLQRPGQSPKRLIYLGTKLDSGVPDRFTGSGS-----GTDFTL   78 (112)
T ss_dssp             EEEECSEEEEETTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEE-----TTEEEE
T ss_pred             EeCcCCEEEECCCCCEEEEEEECcccccCCCCcccEEEEcCCCCceEEEEeccCcCCCCcCceEEeeCC-----CCEEEE
Confidence            4555677889999999999986432     23468898642  11  1111         112221110     023579


Q ss_pred             EEccCCCCCCeeEEEEEecC
Q psy4613          66 TIKKITKYDLGSYKCIAKNS   85 (96)
Q Consensus        66 ~i~~~~~~d~g~y~c~~~~~   85 (96)
                      .|.+++.+|++.|.|.....
T Consensus        79 ~I~~~~~eDsAvYYC~~~~~   98 (112)
T d1ncwl1          79 KISRVEAEDLGVYYCWQGTH   98 (112)
T ss_dssp             EESSCCGGGCEEEEEEECSS
T ss_pred             EECccccCcCEeEEEEcCCC
Confidence            99999999999999976543

>d1kgcd1 b.1.1.1 (D:2-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.68  E-value=1.7e-07  Score=42.60  Aligned_cols=73  Identities=18%  Similarity=0.252  Sum_probs=46.5

Q ss_pred             ceeeecCCCcEEEEEEeeecc-cceeEEeecc--c--eeEe-------cccceEEEEeccccceEEEEEEEccCCCCCCe
Q psy4613           9 QLVGAPIDTDVTLECYVEAYP-KSINYWVRDQ--G--DMVI-------SSERYEVESISRSIFDFKMRLTIKKITKYDLG   76 (96)
Q Consensus         9 ~~~~~~~g~~~~l~c~~~~~~-~~~~~w~~~~--~--~~~~-------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g   76 (96)
                      ..+.+.+|++++|.|...+.. ...+.|++..  .  .++.       ......+.... +  .....|.|.++...|+|
T Consensus         6 ~~~~~~~G~svtl~C~~s~~~~~~~~~WYrQ~pg~~~~~i~~~~~~~~~~~~~~~~~~~-~--~~~~~L~i~~~~~~Dsa   82 (112)
T d1kgcd1           6 NSMESNEEEPVHLPCNHSTISGTDYIHWYRQLPSQGPEYVIHGLTSNVNNRMASLAIAE-D--RKSSTLILHRATLRDAA   82 (112)
T ss_dssp             SEEEEETTSCEEEEEEESCCCTTCCEEEEEECTTSCCEEEEEESSSSEECSSEEEEECT-T--SSEEEEEESSCCGGGCE
T ss_pred             CEEEECCCCCEEEEEEEeCCCccccEEEEEECCCCCcceeeeecceeccccccceeecc-c--CCeeEEEEeecccccce
Confidence            457788999999999976544 3468999842  1  1111       01111111111 1  13467999999999999


Q ss_pred             eEEEEEec
Q psy4613          77 SYKCIAKN   84 (96)
Q Consensus        77 ~y~c~~~~   84 (96)
                      .|.|....
T Consensus        83 ~YyCa~~~   90 (112)
T d1kgcd1          83 VYYCILPL   90 (112)
T ss_dssp             EEEEECCC
T ss_pred             eEeeeEec
Confidence            99998754

>d2bnub1 b.1.1.1 (B:2-113) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.67  E-value=7.9e-08  Score=43.76  Aligned_cols=80  Identities=10%  Similarity=0.153  Sum_probs=49.4

Q ss_pred             EEecCceeeecCCCcEEEEEEeeecccceeEEeeccc--ee--Ee--cccceEEEEeccc------cceEEEEEEEccCC
Q psy4613           4 IHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQG--DM--VI--SSERYEVESISRS------IFDFKMRLTIKKIT   71 (96)
Q Consensus         4 ~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~--~~--~~--~~~~~~~~~~~~~------~~~~~~~l~i~~~~   71 (96)
                      +...|..+.+..|++++|.|.... ....+.|++...  .+  +.  .............      .......|.|.++.
T Consensus         2 VtQ~P~~~~~~~G~svtl~C~~s~-~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~   80 (112)
T d2bnub1           2 VTQTPKFQVLKTGQSMTLQCAQDM-NHEYMSWYRQDPGMGLRLIHYSVGAGITDQGEVPNGYNVSRSTTEDFPLRLLSAA   80 (112)
T ss_dssp             EEEECSEEEEETTCCEEEEEEESS-CCSEEEEEEEETTTEEEEEEEEEETTEEEECSSCTTCEECCSSSSBCCEEESSCC
T ss_pred             eEECCCeEEECCCCCEEEEEEEEC-CccceEecccccccCccceeeEeccCceecCccccceeEecCCCCEEEEEECCCC
Confidence            566677778999999999998654 456799997421  11  10  1111111100000      00023569999999


Q ss_pred             CCCCeeEEEEEec
Q psy4613          72 KYDLGSYKCIAKN   84 (96)
Q Consensus        72 ~~d~g~y~c~~~~   84 (96)
                      .+|++.|.|....
T Consensus        81 ~~DsavYyCA~~~   93 (112)
T d2bnub1          81 PSQTSVYFCASSY   93 (112)
T ss_dssp             GGGCEEEEEEEEC
T ss_pred             HHHCEEEEEeecC
Confidence            9999999998764

>d1j8he1 b.1.1.1 (E:2-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.67  E-value=5.5e-07  Score=40.94  Aligned_cols=81  Identities=11%  Similarity=0.222  Sum_probs=49.4

Q ss_pred             EEecCceeeecCCCcEEEEEEeeecccceeEEeecc--c--eeEe--cccceEEEEecccc------ceEEEEEEEccCC
Q psy4613           4 IHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQ--G--DMVI--SSERYEVESISRSI------FDFKMRLTIKKIT   71 (96)
Q Consensus         4 ~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~--~--~~~~--~~~~~~~~~~~~~~------~~~~~~l~i~~~~   71 (96)
                      +...+..+.+..|+++.|.|.... ....+.|++..  .  .++.  ..............      ......|.|.+++
T Consensus         3 V~QsP~~~~~~~G~~v~l~C~~~~-~~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~   81 (113)
T d1j8he1           3 VTQSSRYLVKRTGEKVFLECVQDM-DHENMFWYRQDPGLGLRLIYFSYDVKMKEKGDIPEGYSVSREKKERFSLILESAS   81 (113)
T ss_dssp             EEESCSEEEEETTCCEEECEEESS-CCSEEEEEEEETTTEEEEEEEESSTTCCEECSCCTTEEEECSSTTBCEEEESSCC
T ss_pred             EEccCCEEEECCCCCEEEEEEEcC-CccEEEeEEecCCCCcceeeeeeeeeeeecccccccceEEeccCcEeeeEeccCc
Confidence            556677788999999999998643 45578898742  1  1111  00000000000000      0012568999999


Q ss_pred             CCCCeeEEEEEecC
Q psy4613          72 KYDLGSYKCIAKNS   85 (96)
Q Consensus        72 ~~d~g~y~c~~~~~   85 (96)
                      .+|++.|.|..+..
T Consensus        82 ~~Dsa~YyCa~~~~   95 (113)
T d1j8he1          82 TNQTSMYLCASSST   95 (113)
T ss_dssp             GGGCEEEEEEEECT
T ss_pred             cCCcccEEeeEccC
Confidence            99999999998753

>d1fo0b_ b.1.1.1 (B:) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.65  E-value=4.6e-07  Score=41.16  Aligned_cols=82  Identities=12%  Similarity=0.182  Sum_probs=49.6

Q ss_pred             eEEecCceeeecCCCcEEEEEEeeecccceeEEeecc--ce--eEe-c--ccceEEEEeccccce----EEEEEEEccCC
Q psy4613           3 VIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQ--GD--MVI-S--SERYEVESISRSIFD----FKMRLTIKKIT   71 (96)
Q Consensus         3 ~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~--~~--~~~-~--~~~~~~~~~~~~~~~----~~~~l~i~~~~   71 (96)
                      .+...|..+.+..|+++.|.|.........+.|++..  ..  ++. .  .............+.    ....+.|....
T Consensus         3 ~V~Q~P~~~~~~~G~~vtL~C~~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~l~l~~~~   82 (112)
T d1fo0b_           3 LLEQNPRWRLVPRGQAVNLRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVTDTELRLQVAN   82 (112)
T ss_dssp             SEEEECSEEECCTTCCEEEEEEESCTTCCEEEEEEECTTCCEEEEEECCSTTCEEEEEETTEEEEEEEEETTEEEEEEES
T ss_pred             eEEeCCCeEEECCCCCEEEEEEEecCCCCcEEEEeECCCCCccccceeccccccccccccccccccccccccEEEEecCC
Confidence            4566677788999999999999876666789999852  11  111 0  011111110000000    11346777788


Q ss_pred             CCCCeeEEEEEec
Q psy4613          72 KYDLGSYKCIAKN   84 (96)
Q Consensus        72 ~~d~g~y~c~~~~   84 (96)
                      .+|++.|.|....
T Consensus        83 ~~dsa~Y~Ca~~~   95 (112)
T d1fo0b_          83 MSQGRTLYCTCSA   95 (112)
T ss_dssp             CCSCEEEEEEEES
T ss_pred             ccCCccEEEEEec
Confidence            8999999998654

>d1neua_ b.1.1.1 (A:) Myelin membrane adhesion molecule P0 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin membrane adhesion molecule P0
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.64  E-value=9.3e-07  Score=40.28  Aligned_cols=79  Identities=18%  Similarity=0.175  Sum_probs=47.3

Q ss_pred             EecCceeeecCCCcEEEEEEeeec----ccceeEEeeccce-----eE-ecc-------------cceEEEEeccccceE
Q psy4613           5 HVPNQLVGAPIDTDVTLECYVEAY----PKSINYWVRDQGD-----MV-ISS-------------ERYEVESISRSIFDF   61 (96)
Q Consensus         5 ~~~~~~~~~~~g~~~~l~c~~~~~----~~~~~~w~~~~~~-----~~-~~~-------------~~~~~~~~~~~~~~~   61 (96)
                      ...+..+.+..|.+++|.|.+...    ....+.|++....     .. ...             .|..+....   ...
T Consensus         3 v~~p~~v~a~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~---~~~   79 (119)
T d1neua_           3 VYTDREVYGAVGSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTFKERIQWVGDP---SWK   79 (119)
T ss_dssp             EECCSEEEEETTSCEEECCEEECSSCCCSCCEEEEEEEETTCCCCEEEEEEETTEEEECSSSTTTTCEEECCBG---GGT
T ss_pred             EcCCCeEEEeeCCCEEEEEEEEecCCCCccEEEEEEEecccCCceeEEEEEeecccccccCccceeEEEEEEEC---CCC
Confidence            345666789999999999987532    2236889763210     11 000             011111000   001


Q ss_pred             EEEEEEccCCCCCCeeEEEEEecCC
Q psy4613          62 KMRLTIKKITKYDLGSYKCIAKNSL   86 (96)
Q Consensus        62 ~~~l~i~~~~~~d~g~y~c~~~~~~   86 (96)
                      ...|.|.+++..|+|.|.|.+.+..
T Consensus        80 ~~sL~I~~v~~~DsG~Y~C~v~~~~  104 (119)
T d1neua_          80 DGSIVIHNLDYSDNGTFTCDVKNPP  104 (119)
T ss_dssp             BCCEEECSCCGGGCEEEEEEEEC--
T ss_pred             EEEEEECCCChHHCEEEEEEEEECC
Confidence            2469999999999999999998754

>d1nkra1 b.1.1.4 (A:6-101) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=98.64  E-value=7.1e-07  Score=39.48  Aligned_cols=77  Identities=16%  Similarity=0.085  Sum_probs=47.1

Q ss_pred             CCeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEE
Q psy4613           1 HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKC   80 (96)
Q Consensus         1 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c   80 (96)
                      +|.+...+.. .+..|.+++|.|.... ....+.+++++.............     ..+....+.|..++..|.|.|.|
T Consensus         2 KPsLsa~P~~-~V~~G~~VTl~C~~~~-~~~~f~L~keg~~~~~~~~~~~~~-----~~~~~a~F~l~~v~~~~~G~Y~C   74 (96)
T d1nkra1           2 KPSLLAHPGP-LVKSEETVILQCWSDV-MFEHFLLHREGMFNDTLRLIGEHH-----DGVSKANFSISRMTQDLAGTYRC   74 (96)
T ss_dssp             CCEEEEESCS-EEETTCCEEEEEEESS-CCSEEEEEEESSSCEEEEEECEEE-----TTEEEEEEEESSCCGGGCEEEEE
T ss_pred             CCEEEeeCCC-ccCCCCcEEEEECCCC-CCCEEEEEECCCcCCceeeeeeec-----CCceEEEEEEcccCcccCeEEEE
Confidence            4677666643 4789999999998543 333556666643221100000000     00124678999999999999999


Q ss_pred             EEec
Q psy4613          81 IAKN   84 (96)
Q Consensus        81 ~~~~   84 (96)
                      ....
T Consensus        75 ~y~~   78 (96)
T d1nkra1          75 YGSV   78 (96)
T ss_dssp             EEEB
T ss_pred             EEEc
Confidence            8653

>d2cdeb1 b.1.1.1 (B:5-116) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.63  E-value=1.7e-07  Score=42.64  Aligned_cols=80  Identities=14%  Similarity=0.203  Sum_probs=48.4

Q ss_pred             EecCceeeecCCCcEEEEEEeeecccceeEEeeccc----eeEe--cccceEEEEecc------ccceEEEEEEEccCCC
Q psy4613           5 HVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQG----DMVI--SSERYEVESISR------SIFDFKMRLTIKKITK   72 (96)
Q Consensus         5 ~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~----~~~~--~~~~~~~~~~~~------~~~~~~~~l~i~~~~~   72 (96)
                      ...|..+.+..|++++|.|.... ....+.|++...    .++.  ............      ........|.|..++.
T Consensus         2 ~QsP~~~~~~~G~svtL~C~~~~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~   80 (112)
T d2cdeb1           2 YQTPRYLVIGTGKKITLECSQTM-GHDKMYWYQQDPGMELHLIHYSYGVNSTEKGDLSSESTVSRIRTEHFPLTLESARP   80 (112)
T ss_dssp             EEECSEEEEETTCCBCCEEEETT-CCSEEEEEEECTTSCCEEEEEESSTTCCEESSSCCCCEECCSSSSBCCEEBSSCCT
T ss_pred             EECCCEEEECCCCCEEEEEEEeC-CcccEEEEEEcCCCCcEEeeeeeccCccccccccccceeecCCCCceEeeeccccc
Confidence            45667788999999999998653 345789997421    1111  000000000000      0001235688999999


Q ss_pred             CCCeeEEEEEecC
Q psy4613          73 YDLGSYKCIAKNS   85 (96)
Q Consensus        73 ~d~g~y~c~~~~~   85 (96)
                      +|++.|.|..+..
T Consensus        81 ~Dsa~YyCA~~~~   93 (112)
T d2cdeb1          81 SHTSQYLCASSEN   93 (112)
T ss_dssp             TTCSEEEEEEECS
T ss_pred             cccccEEEEEecC
Confidence            9999999988754

>d1ucta2 b.1.1.4 (A:101-196) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.61  E-value=9.7e-08  Score=42.35  Aligned_cols=73  Identities=11%  Similarity=0.163  Sum_probs=47.9

Q ss_pred             CCeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEE
Q psy4613           1 HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKC   80 (96)
Q Consensus         1 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c   80 (96)
                      +|.+...+.. .+..|.+++|.|.......-.+.|++++.....   ......       ....+.|..++..|.|.|.|
T Consensus         5 kP~Lsa~P~~-~V~~G~~VTL~C~~~~~~~~~f~L~k~g~~~~~---~~~~~~-------~~a~F~l~~v~~~~~G~Y~C   73 (96)
T d1ucta2           5 KPFLSADRGL-VLMPGENISLTCSSAHIPFDRFSLAKEGELSLP---QHQSGE-------HPANFSLGPVDLNVSGIYRC   73 (96)
T ss_dssp             CCEEEESSCS-EECTTCCCEEEEECSSSCCSEEEEEETTCSSCC---SEEECS-------SSEEEECCSCCGGGCEEEEE
T ss_pred             CCEEEEeCCC-ccCCCCeEEEEEeCCCCCceEEEEEECCcccce---EEcCCC-------cccEEEEeccccccCcEEEE
Confidence            4666666644 588999999999853323345678887643211   111100       12568899999999999999


Q ss_pred             EEec
Q psy4613          81 IAKN   84 (96)
Q Consensus        81 ~~~~   84 (96)
                      ....
T Consensus        74 ~y~~   77 (96)
T d1ucta2          74 YGWY   77 (96)
T ss_dssp             EEEC
T ss_pred             EEEc
Confidence            8654

>d1olla2 b.1.1.4 (A:96-188) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.61  E-value=1.6e-07  Score=41.35  Aligned_cols=70  Identities=14%  Similarity=0.302  Sum_probs=45.8

Q ss_pred             CCeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEE
Q psy4613           1 HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKC   80 (96)
Q Consensus         1 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c   80 (96)
                      +|.+...+..+ +..|.+++|.|.... ..-.+.+++++......     ... .    .....+.|..+...|.|.|.|
T Consensus         4 kPsLsa~P~~~-V~~G~~VTL~C~~~~-~~~~f~L~Keg~~~~~~-----~~~-~----~~~a~F~i~~v~~~~~G~Y~C   71 (93)
T d1olla2           4 TPTLSVHPGPE-VISGEKVTFYCRLDT-ATSMFLLLKEGRSSHVQ-----RGY-G----KVQAEFPLGPVTTAHRGTYRC   71 (93)
T ss_dssp             CCEEEEESCSE-EETTCEEEEEEECSS-SCSEEEEEEESSSCEEE-----EEE-C----SSEEEEEEEECCGGGCEEEEE
T ss_pred             CCEEEEeCCCc-ccCCCcEEEEECCCC-CCCEEEEEECCCcccee-----ecC-C----CceeEEEecccChhcCceEEE
Confidence            46666655444 788999999998543 33456677765432211     000 0    023568899999999999999


Q ss_pred             EE
Q psy4613          81 IA   82 (96)
Q Consensus        81 ~~   82 (96)
                      ..
T Consensus        72 ~~   73 (93)
T d1olla2          72 FG   73 (93)
T ss_dssp             EC
T ss_pred             Ee
Confidence            74

>d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD80, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.60  E-value=1.9e-07  Score=41.86  Aligned_cols=78  Identities=15%  Similarity=0.266  Sum_probs=44.5

Q ss_pred             eeeecCCCcEEEEEEeeeccc----ceeEEeeccceeEe-cccceEEEEecccc----ceEEEEEEEccCCCCCCeeEEE
Q psy4613          10 LVGAPIDTDVTLECYVEAYPK----SINYWVRDQGDMVI-SSERYEVESISRSI----FDFKMRLTIKKITKYDLGSYKC   80 (96)
Q Consensus        10 ~~~~~~g~~~~l~c~~~~~~~----~~~~w~~~~~~~~~-~~~~~~~~~~~~~~----~~~~~~l~i~~~~~~d~g~y~c   80 (96)
                      .+.+..|+.+.|.|.......    ..+.|.+.+..... ..............    .....+|.|.+++.+|+|.|.|
T Consensus         3 ~Vt~~~G~~a~L~C~~~~~~~~~~~~~v~w~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~g~~sL~I~~v~~~D~G~Y~C   82 (105)
T d1dr9a1           3 HVTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSIVILALRPSDEGTYEC   82 (105)
T ss_dssp             EEEEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEESTTTTEEEECSCCGGGCEEEEE
T ss_pred             EEEEEeCCCEEEEEEECCcccceeEEEEEEEecceEEEEEEeccceeecceeeeeeeccCCcEEEEECcCChHHCeEEEE
Confidence            356789999999998754221    24567665433321 11111000000000    0012469999999999999999


Q ss_pred             EEecCCC
Q psy4613          81 IAKNSLG   87 (96)
Q Consensus        81 ~~~~~~g   87 (96)
                      .+.+..+
T Consensus        83 ~V~~~~~   89 (105)
T d1dr9a1          83 VVLKYEK   89 (105)
T ss_dssp             EEEECCT
T ss_pred             EEEeCCC
Confidence            9875433

>d1u9ka_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.59  E-value=1.4e-06  Score=39.51  Aligned_cols=74  Identities=14%  Similarity=0.349  Sum_probs=47.9

Q ss_pred             ceeeecCCCcEEEEEEeeec--ccceeEEeecc--ce---eEec-----------ccceEEEEeccccceEEEEEEEccC
Q psy4613           9 QLVGAPIDTDVTLECYVEAY--PKSINYWVRDQ--GD---MVIS-----------SERYEVESISRSIFDFKMRLTIKKI   70 (96)
Q Consensus         9 ~~~~~~~g~~~~l~c~~~~~--~~~~~~w~~~~--~~---~~~~-----------~~~~~~~~~~~~~~~~~~~l~i~~~   70 (96)
                      ....+.+|++++|.|...+.  ....+.|++..  ..   ++..           ..++.+.....   .....|+|.++
T Consensus         3 ~~~~~~eG~svtl~C~ys~~~~~~~~~~W~rq~pg~~~~~li~~~~~~~~~~~~~~gR~sis~d~~---~~~~~lti~~L   79 (110)
T d1u9ka_           3 ERYDLVEGQTLTVKCPFNIMKYANSQKAWQRLPDGKEPLTLVVTQRPFTRPSEVHMGKFTLKHDPS---EAMLQVQMTDL   79 (110)
T ss_dssp             EEEEECTTCCEEEEEECCHHHHTTSEEEEEECCTTSCCEEEEECCSSTTSCEEEEETTEEEEEEGG---GTEEEEEECSC
T ss_pred             CCCcCCCCCCEEEEEEECCCCccCCcEEEEEECCCCCEEEEEecCCCceeechhhCcEEEEEEECC---CCEEEEEECcc
Confidence            35678899999999998754  34467898742  11   1111           11233322111   12467999999


Q ss_pred             CCCCCeeEEEEEecC
Q psy4613          71 TKYDLGSYKCIAKNS   85 (96)
Q Consensus        71 ~~~d~g~y~c~~~~~   85 (96)
                      +.+|.|.|.|.....
T Consensus        80 ~~eDsa~YyCa~~~~   94 (110)
T d1u9ka_          80 QVTDSGLYRCVIYHP   94 (110)
T ss_dssp             CGGGCEEEEEEEECT
T ss_pred             ccCCCEEEEEEEeCC
Confidence            999999999998654

>d1nkra2 b.1.1.4 (A:102-200) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=98.57  E-value=6.3e-07  Score=39.87  Aligned_cols=75  Identities=12%  Similarity=0.100  Sum_probs=43.8

Q ss_pred             CCeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEE
Q psy4613           1 HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKC   80 (96)
Q Consensus         1 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c   80 (96)
                      +|.+...+.. .+..|.+++|.|.... ....+.+++++..............       ....+.|..+...|.|.|.|
T Consensus         6 kPsLsa~P~~-~V~~G~~VTL~C~~~~-~~~~f~L~k~g~~~~~~~~~~~~~~-------~~~~f~~~~~~~~~~G~Y~C   76 (99)
T d1nkra2           6 KPSLSAQPGP-TVLAGENVTLSCSSRS-SYDMYHLSREGEAHERRLPAGPKVN-------GTFQADFPLGPATHGGTYRC   76 (99)
T ss_dssp             CCEEEEESCS-EECTTCEEEEEEEESS-CCSEEEEEETTCSSCEEEECEEEET-------TEEEEEEEEEECCSCEEEEE
T ss_pred             CCEEEEeCCC-cccCCCeEEEEECCCC-CccEEEEEECCCccccEEEccccCC-------ccEEEEEeccccccCEEEEE
Confidence            4666655544 4788999999997543 3446677777533211100000000       12345666677789999999


Q ss_pred             EEec
Q psy4613          81 IAKN   84 (96)
Q Consensus        81 ~~~~   84 (96)
                      ....
T Consensus        77 ~y~~   80 (99)
T d1nkra2          77 FGSF   80 (99)
T ss_dssp             EEEE
T ss_pred             Eeec
Confidence            7543

>d1dqta_ b.1.1.1 (A:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.55  E-value=2e-06  Score=39.28  Aligned_cols=79  Identities=19%  Similarity=0.248  Sum_probs=46.9

Q ss_pred             EEecCceeeecCCCcEEEEEEeeecccc---eeEEeeccc--ee--Ee--cccceEEEEeccccc------eEEEEEEEc
Q psy4613           4 IHVPNQLVGAPIDTDVTLECYVEAYPKS---INYWVRDQG--DM--VI--SSERYEVESISRSIF------DFKMRLTIK   68 (96)
Q Consensus         4 ~~~~~~~~~~~~g~~~~l~c~~~~~~~~---~~~w~~~~~--~~--~~--~~~~~~~~~~~~~~~------~~~~~l~i~   68 (96)
                      +..| ..+.+..|+.+.|.|........   .+.|++...  ..  ..  ....... .......      .....|.|.
T Consensus         3 VtQP-~~~~~~~g~~v~L~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~L~I~   80 (117)
T d1dqta_           3 VTQP-SVVLASSHGVASFPCEYSPSHNTDEVRVTVLRQTNDQMTEVCATTFTEKNTV-GFLDYPFCSGTFNESRVNLTIQ   80 (117)
T ss_dssp             EECC-SEEECCTTSCEEEEEEEESCCTTCEEEEEEEEECSSCEEEEEEEEECSSSBE-ECTTCTTEEEEEETTEEEEEEC
T ss_pred             EECC-CEEEEcCCCcEEEEEECccCCcccceeEEEEEeCCCCCcEEEEEEeCCcccc-cCCCCcEEEEeCCCCEEEEEhh
Confidence            4454 56778999999999997643322   477987421  11  10  0000000 0000000      024679999


Q ss_pred             cCCCCCCeeEEEEEec
Q psy4613          69 KITKYDLGSYKCIAKN   84 (96)
Q Consensus        69 ~~~~~d~g~y~c~~~~   84 (96)
                      +++.+|.|.|.|....
T Consensus        81 ~l~~~Dsa~YyCa~~~   96 (117)
T d1dqta_          81 GLRAVDTGLYLCKVEL   96 (117)
T ss_dssp             SCCGGGCEEEEEEEEE
T ss_pred             cCccccCEeEEEEEec
Confidence            9999999999998763

>d1i8lc_ b.1.1.1 (C:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.55  E-value=6.9e-07  Score=40.92  Aligned_cols=80  Identities=16%  Similarity=0.174  Sum_probs=47.3

Q ss_pred             EEecCceeeecCCCcEEEEEEeeecccc---eeEEeeccc----eeE---eccc-ceEEEE-e--ccccceEEEEEEEcc
Q psy4613           4 IHVPNQLVGAPIDTDVTLECYVEAYPKS---INYWVRDQG----DMV---ISSE-RYEVES-I--SRSIFDFKMRLTIKK   69 (96)
Q Consensus         4 ~~~~~~~~~~~~g~~~~l~c~~~~~~~~---~~~w~~~~~----~~~---~~~~-~~~~~~-~--~~~~~~~~~~l~i~~   69 (96)
                      +..| ..+.+..|+.++|.|........   .+.|++...    +++   .... ...... .  ..........|.|.+
T Consensus         3 vtQP-~~~~~~~g~~vtL~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~   81 (118)
T d1i8lc_           3 VAQP-AVVLASSRGIASFVCEYASPGKATEVRVTVLRQADSQVTEVCAATYMMGNELTFLDDSICTGTSSGNQVNLTIQG   81 (118)
T ss_dssp             EECC-SEEECCSSSCEEEEEEECCCSCCSEEEEEEEEESTTCCCEEEEEEEETTSCCCCCSSCSCCCCBCSSEEEEEECS
T ss_pred             EeCC-CEEEEeCCCcEEEEEEccccccccceeEEEEEECCCCeeEEEEEEeCCCCEecccCCcEEeEcCCCCEEEEEeec
Confidence            4454 46778899999999997643322   588987532    111   0000 000000 0  001111346799999


Q ss_pred             CCCCCCeeEEEEEec
Q psy4613          70 ITKYDLGSYKCIAKN   84 (96)
Q Consensus        70 ~~~~d~g~y~c~~~~   84 (96)
                      ++..|.+.|.|.++.
T Consensus        82 l~~~Dsa~YyCa~~~   96 (118)
T d1i8lc_          82 LRAMDTGLYICKVEL   96 (118)
T ss_dssp             CCGGGCEEEEEEEEE
T ss_pred             cccCCCEEEEEeEec
Confidence            999999999998764

>d1ymmd1 b.1.1.1 (D:9-104) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.54  E-value=5.3e-09  Score=46.53  Aligned_cols=75  Identities=21%  Similarity=0.286  Sum_probs=47.0

Q ss_pred             eeeecCCCcEEEEEEeeecccceeEEeecc--ce--eEe---c------ccceEEEEeccccceEEEEEEEccCCCCCCe
Q psy4613          10 LVGAPIDTDVTLECYVEAYPKSINYWVRDQ--GD--MVI---S------SERYEVESISRSIFDFKMRLTIKKITKYDLG   76 (96)
Q Consensus        10 ~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~--~~--~~~---~------~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g   76 (96)
                      .+.+.+|++++|.|.... ....+.|++..  ..  .+.   .      ..++.+..   +.......|.|.+++.+|+|
T Consensus         2 slsV~eG~~vtL~C~~~~-~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~r~~~~~---~~~~~~~~L~I~~~~~~Dsa   77 (96)
T d1ymmd1           2 ALSIQEGENATMNCSYKT-SINNLQWYRQNSGRGLVHLILIRSNEREKHSGRLRVTL---DTSKKSSSLLITASRAADTA   77 (96)
T ss_dssp             CCCCSSCCCCCBCCBCSS-CEEEEEEECCCSSCCCCCCCEEESSSCCCCSSSCCBCC---BGGGTBCCBCCSSCCSTTCS
T ss_pred             CceECCCCCEEEEEEEeC-CcccEEEEEECCCCCccccccccceecccccccceeec---cCcceecccCcCCCCcccCE
Confidence            456789999999998754 45578999742  11  110   0      11111110   00112356899999999999


Q ss_pred             eEEEEEecCCCc
Q psy4613          77 SYKCIAKNSLGE   88 (96)
Q Consensus        77 ~y~c~~~~~~g~   88 (96)
                      .|.|..+...|.
T Consensus        78 ~YyCA~~~~~g~   89 (96)
T d1ymmd1          78 SYFCATDTTSGT   89 (96)
T ss_dssp             CCEEEEEETTSC
T ss_pred             EEeEeEecCCCC
Confidence            999998776554

>d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.51  E-value=3.8e-07  Score=41.12  Aligned_cols=74  Identities=16%  Similarity=0.161  Sum_probs=43.3

Q ss_pred             ecCCCcEEEEEEeeecccceeEEeecccee----Ee---cccceEEEE---eccccceEEEEEEEccCCCCCCeeEEEEE
Q psy4613          13 APIDTDVTLECYVEAYPKSINYWVRDQGDM----VI---SSERYEVES---ISRSIFDFKMRLTIKKITKYDLGSYKCIA   82 (96)
Q Consensus        13 ~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~----~~---~~~~~~~~~---~~~~~~~~~~~l~i~~~~~~d~g~y~c~~   82 (96)
                      +..|+++.|.|.........+.|++.....    +.   .........   ..+.....+..|.|.+++..|+|.|.|.+
T Consensus        11 v~~G~~V~L~c~~~p~~~~~~~W~k~~~~~~~~~i~~y~~~~~~~~~~~~y~gR~~l~~ngSL~I~~v~~~D~G~Y~c~v   90 (107)
T d1l6za1          11 VAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSLLFQMITMKDMGVYTLDM   90 (107)
T ss_dssp             CCTTCCEEEEEESCCTTCSEEEEEESSCCSGGGEEEEECSTTCCEECCSSCCSSEEECTTSCEEECSCCGGGCEEEEEEE
T ss_pred             ccCCCCEEEEecCCCCCceEEEEEeCcccCCceeeEEEEcCCCccccCCcceeEEEEcccccEEEcCCCchhCEEEEEEE
Confidence            568999999997544445578898743211    00   000000000   00000002356999999999999999998


Q ss_pred             ecCC
Q psy4613          83 KNSL   86 (96)
Q Consensus        83 ~~~~   86 (96)
                      .+..
T Consensus        91 ~~~~   94 (107)
T d1l6za1          91 TDEN   94 (107)
T ss_dssp             EETT
T ss_pred             EECC
Confidence            7654

>d1vcaa1 b.1.1.3 (A:91-199) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.49  E-value=1.2e-06  Score=39.50  Aligned_cols=81  Identities=17%  Similarity=0.178  Sum_probs=46.1

Q ss_pred             CeEEecCceeeecCCCcEEEEEEeee-cccc--eeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeE
Q psy4613           2 PVIHVPNQLVGAPIDTDVTLECYVEA-YPKS--INYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSY   78 (96)
Q Consensus         2 p~~~~~~~~~~~~~g~~~~l~c~~~~-~~~~--~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y   78 (96)
                      |.|..+.   .+..|+.++|.|.+.+ .|.+  .+.|++++..+........  ..........+.+.+......+...|
T Consensus         5 P~I~~~~---~l~~G~~~~l~C~v~~~~P~~~~~i~W~~g~~~~~~~~~~~~--~~~~~~~~~~s~l~~~~~~~D~g~~l   79 (109)
T d1vcaa1           5 PEIHLSG---PLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLED--ADRKSLETKSLEVTFTPVIEDIGKVL   79 (109)
T ss_dssp             CEEEESS---CEETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEECCSC--CSSCCCEEEEEEEEECCCGGGTTCEE
T ss_pred             CEEecCC---CccCCCeEEEEeEeCCcCCCCceEEEEeccCceeeccccccc--cccCCcceeeEEEEccCChHHCCcEE
Confidence            5565543   2568999999999876 4543  5889987654432110000  00001111345566665454445589


Q ss_pred             EEEEecCCC
Q psy4613          79 KCIAKNSLG   87 (96)
Q Consensus        79 ~c~~~~~~g   87 (96)
                      .|.+.+..+
T Consensus        80 tC~a~~~~~   88 (109)
T d1vcaa1          80 VCRAKLHID   88 (109)
T ss_dssp             EEEEEECSC
T ss_pred             EEEEEcCcC
Confidence            999997654

>d2g5ra1 b.1.1.1 (A:24-144) N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.46  E-value=7.7e-07  Score=40.80  Aligned_cols=74  Identities=18%  Similarity=0.275  Sum_probs=45.1

Q ss_pred             CceeeecCCCcEEEEEEeeecc-------cceeEEeeccceeE------ec----------ccceEEEEeccccceEEEE
Q psy4613           8 NQLVGAPIDTDVTLECYVEAYP-------KSINYWVRDQGDMV------IS----------SERYEVESISRSIFDFKMR   64 (96)
Q Consensus         8 ~~~~~~~~g~~~~l~c~~~~~~-------~~~~~w~~~~~~~~------~~----------~~~~~~~~~~~~~~~~~~~   64 (96)
                      +..+.+..|+++.|.|.+....       ...+.|++......      ..          ..+..+......   ...+
T Consensus         8 ~~svtv~~G~~V~ipC~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~---~~~s   84 (121)
T d2g5ra1           8 QSSVTVQEGMCVHVRCSFSYPVDSQTDSDPVHGYWFRAGNDISWKAPVATNNPAWAVQEETRDRFHLLGDPQT---KNCT   84 (121)
T ss_dssp             CSEEEECTTCCEEECCEEECC--CTTTTSCCEEEEEECC-----CCCSEESCTTSCCCTTTTTTEEECSCGGG---TBCC
T ss_pred             CCEEEEccCCcEEEEEEEeCCCCCCcccccEEEEeeEecCCCceEEEEeeCCCCceeccccceEEEEeeeCcC---CEEE
Confidence            4567899999999999875221       12467876432111      00          112222211111   2357


Q ss_pred             EEEccCCCCCCeeEEEEEec
Q psy4613          65 LTIKKITKYDLGSYKCIAKN   84 (96)
Q Consensus        65 l~i~~~~~~d~g~y~c~~~~   84 (96)
                      |.|.+++..|+|.|.|.+..
T Consensus        85 L~I~~v~~~DsG~Y~C~v~~  104 (121)
T d2g5ra1          85 LSIRDARMSDAGRYFFRMEK  104 (121)
T ss_dssp             EEECSCCGGGCEEEEEEEEE
T ss_pred             EEECCCChHHCEEEEEEEEe
Confidence            99999999999999999864

>d1ncna_ b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD86 (b7-2), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.39  E-value=1.1e-06  Score=39.52  Aligned_cols=22  Identities=27%  Similarity=0.581  Sum_probs=19.6

Q ss_pred             EEEEEccCCCCCCeeEEEEEec
Q psy4613          63 MRLTIKKITKYDLGSYKCIAKN   84 (96)
Q Consensus        63 ~~l~i~~~~~~d~g~y~c~~~~   84 (96)
                      ..|.|.+++..|+|.|.|.+..
T Consensus        69 ~sL~I~~v~~~D~G~Y~C~V~~   90 (110)
T d1ncna_          69 WTLRLHNLQIKDKGLYQCIIHH   90 (110)
T ss_dssp             TEEEECSCCGGGCEEEEEEEEE
T ss_pred             EEEEECCCChhHCEEEEEEEEe
Confidence            4699999999999999999864

>d1muja1 b.1.1.2 (A:84-183) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-A group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-A group [TaxId: 10090]

Probab=98.39  E-value=4.7e-06  Score=37.04  Aligned_cols=82  Identities=17%  Similarity=0.114  Sum_probs=45.4

Q ss_pred             CCeEEecCceeeecCCCcEEEEEEeeeccc--ceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeE
Q psy4613           1 HPVIHVPNQLVGAPIDTDVTLECYVEAYPK--SINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSY   78 (96)
Q Consensus         1 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~--~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y   78 (96)
                      +|.+..-+.. .+..|+..+|.|.+.+.-+  -.+.|.+++................+..+...+.|.+..   .+...|
T Consensus         3 pP~V~v~p~~-~~~~~~~~tL~C~v~gFyP~~i~v~W~~ng~~v~~~~~~t~~~~~~dgtf~~~s~l~v~~---~~~~~y   78 (100)
T d1muja1           3 APQATVFPKS-PVLLGQPNTLICFVDNIFPPVINITWLRNSKSVADGVYETSFFVNRDYSFHKLSYLTFIP---SDDDIY   78 (100)
T ss_dssp             CCEEEEEESS-CCCTTSCEEEEEEEEEECSSCCEEEEEESSSBCCSSEEECCCEECTTSCEEEEEEEEECC---CTTCCE
T ss_pred             CCEEEEEcCC-ccccCCCEEEEEEEEeEECCCCEEEEEeCCeeccCCceeeeeEECCCCCEEEEEEeEEcC---CCCCEE
Confidence            4555442222 2456888899999998643  378899886544211000011112222344455565543   344579


Q ss_pred             EEEEecCC
Q psy4613          79 KCIAKNSL   86 (96)
Q Consensus        79 ~c~~~~~~   86 (96)
                      .|.+....
T Consensus        79 tC~V~H~s   86 (100)
T d1muja1          79 DCKVEHWG   86 (100)
T ss_dssp             EEEEECTT
T ss_pred             EEEEEECC
Confidence            99998753

>d1qfoa_ b.1.1.1 (A:) N-terminal domain of sialoadhesin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialoadhesin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.36  E-value=2e-06  Score=38.87  Aligned_cols=75  Identities=17%  Similarity=0.144  Sum_probs=44.8

Q ss_pred             CceeeecCCCcEEEEEEeeec----cc--ceeEEeeccce---eE-e----------cccceEEEEeccccceEEEEEEE
Q psy4613           8 NQLVGAPIDTDVTLECYVEAY----PK--SINYWVRDQGD---MV-I----------SSERYEVESISRSIFDFKMRLTI   67 (96)
Q Consensus         8 ~~~~~~~~g~~~~l~c~~~~~----~~--~~~~w~~~~~~---~~-~----------~~~~~~~~~~~~~~~~~~~~l~i   67 (96)
                      |..+.+..|..+.|.|.+...    ..  -.+.|++....   .. .          ...+..+.....   ....+|.|
T Consensus         7 P~~v~~~~G~~V~l~C~f~~p~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~---~~~~sL~I   83 (118)
T d1qfoa_           7 PKNVQGLSGSCLLIPCIFSYPADVPVSNGITAIWYYDYSGKRQVVIHSGDPKLVDKRFRGRAELMGNMD---HKVCNLLL   83 (118)
T ss_dssp             CSEEEEETTSCEEECCEEECCTTSCC--CCEEEEEESTTTTCEEEEESSCGGGSCTTTTTTEEECSCGG---GTBCCEEE
T ss_pred             CCEEEEecCCcEEEEEEEeeccCCCCcceEEEEEEeeceeccceeeeeccccccccccCCCeEEEEeCc---CCEEEEEE
Confidence            356789999999999997631    11  13446553211   11 0          011222211111   12356999


Q ss_pred             ccCCCCCCeeEEEEEecC
Q psy4613          68 KKITKYDLGSYKCIAKNS   85 (96)
Q Consensus        68 ~~~~~~d~g~y~c~~~~~   85 (96)
                      .+++..|+|.|.|.+...
T Consensus        84 ~~v~~~DsG~Y~C~v~~~  101 (118)
T d1qfoa_          84 KDLKPEDSGTYNFRFEIS  101 (118)
T ss_dssp             CSCCGGGCEEEEEEEECC
T ss_pred             CCCChhHCEEEEEEEEeC
Confidence            999999999999998754

>d1q0xl2 b.1.1.2 (L:108-212) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.35  E-value=2.4e-06  Score=38.14  Aligned_cols=76  Identities=16%  Similarity=0.166  Sum_probs=42.0

Q ss_pred             CCCcEEEEEEeeecccc--eeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCceE
Q psy4613          15 IDTDVTLECYVEAYPKS--INYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVE   90 (96)
Q Consensus        15 ~g~~~~l~c~~~~~~~~--~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~~   90 (96)
                      .+..+.|.|.+.+..+.  .+.|.+++................+..+...+.|.+..-.-.....|.|.+........
T Consensus        19 ~~~~~tl~C~v~~f~P~~i~v~W~~~g~~~~~~~~t~~~~~~~dgtys~~S~L~v~~~~w~~~~~ytC~V~H~~~~~~   96 (102)
T d1q0xl2          19 STAKATLVCTITDFYPGVVTVDWKVDGTPVTAGMETTQPSKQSNNKYMASSYLTLTARAWERHSSYSCQVTHEGHSSN   96 (102)
T ss_dssp             TTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEECTTSCEEEEEEEEEEHHHHTTCCEEEEEEEETTEEEE
T ss_pred             CCCeEEEEEEEeeeeCCCCEEEEEECCEECCCCeEecccEEcCCCCEEEEEEEEECHHHhCCCCEEEEEEEECCccEe
Confidence            45678999999886433  78899876543211000011112223343456666654332334589999987544333

>d2agjh1 b.1.1.1 (H:1-120) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=98.31  E-value=1.1e-05  Score=36.95  Aligned_cols=71  Identities=15%  Similarity=0.304  Sum_probs=44.4

Q ss_pred             eecCCCcEEEEEEeeeccc----ceeEEeeccc----eeEe---c----------ccceEEEEeccccceEEEEEEEccC
Q psy4613          12 GAPIDTDVTLECYVEAYPK----SINYWVRDQG----DMVI---S----------SERYEVESISRSIFDFKMRLTIKKI   70 (96)
Q Consensus        12 ~~~~g~~~~l~c~~~~~~~----~~~~w~~~~~----~~~~---~----------~~~~~~~~~~~~~~~~~~~l~i~~~   70 (96)
                      .+++|+++.|.|.+.+...    ..+.|++...    +...   .          ..|+.+.....   .....|.|.++
T Consensus        11 ~v~PG~sv~LsC~~SG~s~ss~~~~~~WyRQ~Pg~~le~l~~i~~~~~~~~~~~~~gRft~s~d~s---~~~~~L~i~~l   87 (120)
T d2agjh1          11 LVKPTQTLTLTCTFSGFSLTTTGEGVGWIRQPPGKALEFLAFIYWNDAKRYNPSLQSRLTITKDAS---KKQVVLTLTNL   87 (120)
T ss_dssp             BCCSSSEEEEEEEEESCCTTSSSCEEEEEEECTTSCCEEEEEEEGGGCEEECGGGCSSEEEECCTT---TTEEEEEEESC
T ss_pred             eECCCCCEEEEEEEcccCccCCCCeEeeccccccccceeeecccCCcccccchhhccccceecccc---cceeeeeEEee
Confidence            3678999999999876432    3578987421    1110   0          12232221111   12367999999


Q ss_pred             CCCCCeeEEEEEecC
Q psy4613          71 TKYDLGSYKCIAKNS   85 (96)
Q Consensus        71 ~~~d~g~y~c~~~~~   85 (96)
                      +.+|.+.|.|.....
T Consensus        88 ~~eDsAvYyCAr~~~  102 (120)
T d2agjh1          88 DPVDTATYYCARTSG  102 (120)
T ss_dssp             CGGGCEEEEEEEECS
T ss_pred             eeccceEEeeEecCC
Confidence            999999999986543

>d1ugna2 b.1.1.4 (A:98-195) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.29  E-value=1.1e-05  Score=35.73  Aligned_cols=79  Identities=14%  Similarity=0.150  Sum_probs=44.4

Q ss_pred             CCeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEE
Q psy4613           1 HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKC   80 (96)
Q Consensus         1 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c   80 (96)
                      +|.+...+..+ +..|.+++|.|.... ....+..++++.......  .......  ..+....+.|..++..|.|.|.|
T Consensus         4 kPsLsa~P~~~-v~~G~~VTL~C~~~~-~~~~f~L~k~g~~~~~~~--~~~~~~~--~~~~~a~F~l~~v~~~~~G~Y~C   77 (98)
T d1ugna2           4 KPTLSAQPSPV-VNSGGNVTLQCDSQV-AFDGFILCKEGEDEHPQC--LNSQPHA--RGSSRAIFSVGPVSPSRRWWYRC   77 (98)
T ss_dssp             CCEEEEESCSE-EETTCCEEEEEECSS-CCSEEEEEEC------CE--EEC--------CCEEEEEECCCCTTSCEEEEE
T ss_pred             CCEEEeeCCCc-cCCCCcEEEEeCCCC-CCCEEEEEECCCcCCcEe--eeeEEcC--CCceEEEEEeeecccCCCeEEEE
Confidence            46666666444 889999999998543 233444555543221100  0000000  00123568999999999999999


Q ss_pred             EEecC
Q psy4613          81 IAKNS   85 (96)
Q Consensus        81 ~~~~~   85 (96)
                      .....
T Consensus        78 ~y~~~   82 (98)
T d1ugna2          78 YAYDS   82 (98)
T ss_dssp             EEECT
T ss_pred             eeEcC
Confidence            87543

>d1i3ua_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=98.27  E-value=1.5e-05  Score=36.81  Aligned_cols=70  Identities=17%  Similarity=0.250  Sum_probs=45.1

Q ss_pred             eecCCCcEEEEEEeeeccc--ceeEEeeccc----eeE---e----------------cccceEEEEeccccceEEEEEE
Q psy4613          12 GAPIDTDVTLECYVEAYPK--SINYWVRDQG----DMV---I----------------SSERYEVESISRSIFDFKMRLT   66 (96)
Q Consensus        12 ~~~~g~~~~l~c~~~~~~~--~~~~w~~~~~----~~~---~----------------~~~~~~~~~~~~~~~~~~~~l~   66 (96)
                      .+++|+++.|.|.+.+...  -.+.|++...    ...   .                ...|+.+.....   .....|.
T Consensus        11 lvkpg~sl~LsC~~SG~~~s~y~~~W~RQ~PGkglewl~~I~~~~~~~~~~~~~y~~~~kgR~tis~d~s---~~~~~L~   87 (127)
T d1i3ua_          11 LVQAGDSLKLSCEASGDSIGTYVIGWFRQAPGKERIYLATIGRNLVGPSDFYTRYADSVKGRFAVSRDNA---KNTVNLQ   87 (127)
T ss_dssp             ECCTTCCEEEEEEEESSCGGGSEEEEEEECTTSCCEEEEEEEEEESSSSCEEEEECTTTBTTEEEEEEGG---GTEEEEE
T ss_pred             eECCCCCeEEEEEEcCCCCCCCceEeeeeCCccceeEEEEEccccccCCCCcceechhhccceeEeccCC---ceEEEEe
Confidence            4678999999999987543  3678886421    111   0                001333332211   1235699


Q ss_pred             EccCCCCCCeeEEEEEec
Q psy4613          67 IKKITKYDLGSYKCIAKN   84 (96)
Q Consensus        67 i~~~~~~d~g~y~c~~~~   84 (96)
                      |.+++.+|.+.|.|....
T Consensus        88 i~~l~~eDtAvYYCAr~~  105 (127)
T d1i3ua_          88 MNSLKPEDTAVYYCAAKT  105 (127)
T ss_dssp             ECSCCGGGCEEEEEEEES
T ss_pred             eecccccceeEEEEEEEe
Confidence            999999999999998654

>d1kxvc_ b.1.1.1 (C:) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=98.27  E-value=1.5e-05  Score=36.42  Aligned_cols=70  Identities=17%  Similarity=0.266  Sum_probs=45.7

Q ss_pred             eecCCCcEEEEEEeeeccc--ceeEEeeccc----eeE---e--------c--ccceEEEEeccccceEEEEEEEccCCC
Q psy4613          12 GAPIDTDVTLECYVEAYPK--SINYWVRDQG----DMV---I--------S--SERYEVESISRSIFDFKMRLTIKKITK   72 (96)
Q Consensus        12 ~~~~g~~~~l~c~~~~~~~--~~~~w~~~~~----~~~---~--------~--~~~~~~~~~~~~~~~~~~~l~i~~~~~   72 (96)
                      .+++|+++.|.|.+.+...  ..+.|++...    +.+   .        +  ..|+.+......   ....|.|.+++.
T Consensus        10 ~vkPg~sl~LsC~~SG~~~s~y~~~W~RQ~pGkglewl~~i~~~g~~~y~~~~kgR~tiS~D~s~---~~~~L~i~~L~~   86 (119)
T d1kxvc_          10 TVPAGGSLRLSCAASGNTLCTYDMSWYRRAPGKGRDFVSGIDNDGTTTYVDSVAGRFTISQGNAK---NTAYLQMDSLKP   86 (119)
T ss_dssp             EECTTCCEEEEEEEESCTTCCEEEEEEEECTTSCEEEEEEECTTCCEEECGGGBTTEEEEECSST---TEEEEEECSCCG
T ss_pred             eECCCCCeEEEEEEcCCCccCCceeeeeeCCCCcceeeeecccccchhhhhhhhcceEEecccCC---cceecccccCCc
Confidence            4688999999999887543  3577887421    111   0        0  124444332211   235799999999


Q ss_pred             CCCeeEEEEEec
Q psy4613          73 YDLGSYKCIAKN   84 (96)
Q Consensus        73 ~d~g~y~c~~~~   84 (96)
                      +|.+.|.|....
T Consensus        87 eDtA~YYCAr~~   98 (119)
T d1kxvc_          87 DDTAMYYCKPSL   98 (119)
T ss_dssp             GGCEEEEEEEEE
T ss_pred             CCcceEeeeecc
Confidence            999999998654

>d1fnga1 b.1.1.2 (A:82-182) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-E group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-E group [TaxId: 10090]

Probab=98.24  E-value=1.5e-05  Score=35.43  Aligned_cols=70  Identities=14%  Similarity=0.231  Sum_probs=40.6

Q ss_pred             ecCCCcEEEEEEeeec-ccc-eeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecC
Q psy4613          13 APIDTDVTLECYVEAY-PKS-INYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNS   85 (96)
Q Consensus        13 ~~~g~~~~l~c~~~~~-~~~-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~   85 (96)
                      ...+...+|.|.+.+. |.. .+.|.+++................+..+...+.|.+..   .+...|.|.+...
T Consensus        16 ~~~~~~~tL~C~v~gF~P~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~S~L~v~~---~~~~~ytC~V~H~   87 (101)
T d1fnga1          16 VNLGEPNILICFIDKFSPPVVNVTWLRNGRPVTEGVSETVFLPRDDHLFRKFHYLTFLP---STDDFYDCEVDHW   87 (101)
T ss_dssp             CCTTSCEEEEEEEEEEBSSCCEEEEEETTEEECSSEEECCCEECSSSCEEEEEEEEECC---CTTCCEEEEEECT
T ss_pred             ccCCCCEEEEEEEEeEECCCCEEEEEECCeecCCCcEeCeEEECCCCcEEEEEEeEEcC---CCCCEEEEEEEEC
Confidence            3457778899999986 333 78899886544211011111122223444556666654   2334799999865

>d1rzfl2 b.1.1.2 (L:109-210) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.22  E-value=1.6e-06  Score=38.71  Aligned_cols=75  Identities=16%  Similarity=0.207  Sum_probs=40.8

Q ss_pred             CCCcEEEEEEeeecccc--eeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCce
Q psy4613          15 IDTDVTLECYVEAYPKS--INYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEV   89 (96)
Q Consensus        15 ~g~~~~l~c~~~~~~~~--~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~   89 (96)
                      .+..+.|.|.+.+..+.  .+.|.+++................+..+...+.|.+..-.-.....|.|.+.......
T Consensus        19 ~~~~~tL~C~v~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w~~~~~ytC~V~H~~~~~   95 (102)
T d1rzfl2          19 QANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTV   95 (102)
T ss_dssp             HTTCEEEEEEEEEEBSSCCEEEEEETTEECCSSEEECCCEECTTSCEEEEEEEEECHHHHHHSSCEEEEEEETTEEE
T ss_pred             cCCcEEEEEEEEeeCCCCeEEEEEECCEECCCCEEeCCcEECCCCEEEEEEEEEECHHHhCCCCEEEEEEEECCccE
Confidence            35668999999985433  6889987654321100001111222234445666665433222336999998864433

>d1iqdb1 b.1.1.1 (B:1-114) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.20  E-value=2.2e-05  Score=35.70  Aligned_cols=72  Identities=15%  Similarity=0.242  Sum_probs=46.2

Q ss_pred             eeecCCCcEEEEEEeeecc--cceeEEeecc--cee--E---e-----------cccceEEEEeccccceEEEEEEEccC
Q psy4613          11 VGAPIDTDVTLECYVEAYP--KSINYWVRDQ--GDM--V---I-----------SSERYEVESISRSIFDFKMRLTIKKI   70 (96)
Q Consensus        11 ~~~~~g~~~~l~c~~~~~~--~~~~~w~~~~--~~~--~---~-----------~~~~~~~~~~~~~~~~~~~~l~i~~~   70 (96)
                      ..+++|+++.|.|.+.+..  .-.+.|++..  ..+  .   .           ...|+.+......   ....|.|..+
T Consensus        10 ~~~kPg~sv~LsC~~SG~s~~~y~~~W~RQ~PGkglEwlg~i~~~~~~~~y~~~~~gR~tiS~D~s~---~t~~L~i~~L   86 (117)
T d1iqdb1          10 EVKKPGASVKVSCKVSGYTLTELPVHWVRQAPGKGLEWVGSFDPESGESIYAREFQGSVTMTADTST---NIAYMELSSL   86 (117)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTT---TEEEEEECSC
T ss_pred             ceECCCCCEEEEEEEcCCCCCCCCEEEEEECCCCceeeeeecCCccccceecceeeeeeeeeccccc---ceEEEeeccc
Confidence            3478899999999998754  3357788742  111  1   0           1123333332111   2356999999


Q ss_pred             CCCCCeeEEEEEecC
Q psy4613          71 TKYDLGSYKCIAKNS   85 (96)
Q Consensus        71 ~~~d~g~y~c~~~~~   85 (96)
                      +.+|.+.|+|.....
T Consensus        87 ~~eDtAvYYCA~~~~  101 (117)
T d1iqdb1          87 RSDDTAVYYCAVPDP  101 (117)
T ss_dssp             CGGGCEEEEEEECSS
T ss_pred             CcCcceEEEEeEcCC
Confidence            999999999987654

>d1ugna1 b.1.1.4 (A:2-97) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.16  E-value=3.1e-07  Score=40.65  Aligned_cols=74  Identities=18%  Similarity=0.129  Sum_probs=44.1

Q ss_pred             CCeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEE
Q psy4613           1 HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKC   80 (96)
Q Consensus         1 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c   80 (96)
                      +|.+...+.. .+..|.+++|.|.... ....+.+++++...........   ..    .....+.|..++..|.|.|.|
T Consensus         4 kP~Lsa~Ps~-~V~~G~~VTL~C~~~~-~~~~f~L~keg~~~~~~~~~~~---~~----~~~a~F~i~~v~~~~~G~Y~C   74 (96)
T d1ugna1           4 KPTLWAEPGS-VITQGSPVTLRCQGGQ-ETQEYRLYREKKTAPWITRIPQ---EL----VKKGQFPIPSITWEHTGRYRC   74 (96)
T ss_dssp             CCEEEEESCS-EEETTCCEEEEEECCT-TCCCEEEEESSSCCHHHHTSCH---HH----HTTTEEEESSCCGGGCEEEEE
T ss_pred             CCEEEeECCC-ccCCCCcEEEEEeCCC-CCCEEEEEECCCCcccEEEccC---CC----CCEEEEEEEecCHHHCCeEEE
Confidence            4666655543 4789999999998532 3334555665432110000000   00    012468899999999999999


Q ss_pred             EEe
Q psy4613          81 IAK   83 (96)
Q Consensus        81 ~~~   83 (96)
                      ...
T Consensus        75 ~y~   77 (96)
T d1ugna1          75 YYG   77 (96)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            864

>d1k5nb_ b.1.1.2 (B:) beta2-microglobulin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.14  E-value=2.7e-05  Score=34.51  Aligned_cols=70  Identities=14%  Similarity=0.187  Sum_probs=41.6

Q ss_pred             ecCCCcEEEEEEeeecccc--eeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCC
Q psy4613          13 APIDTDVTLECYVEAYPKS--INYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSL   86 (96)
Q Consensus        13 ~~~g~~~~l~c~~~~~~~~--~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~   86 (96)
                      +..|+..+|.|.+.+.-+.  .+.|.+++..+. ...........+..+...+.+.+.   ..+.+.|.|.+....
T Consensus        16 ~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~v~-~~~~~~~~~~~dgty~~~s~l~v~---~~~~~~ytC~V~H~s   87 (100)
T d1k5nb_          16 AENGKSNFLNCYVSGFHPSDIEVDLLKNGERIE-KVEHSDLSFSKDWSFYLLYYTEFT---PTEKDEYACRVNHVT   87 (100)
T ss_dssp             CCTTSCEEEEEEEEEEBSSCCEEEEEETTEECT-TCEECCCEECTTSCEEEEEEEEEC---CCSSCCEEEEEECTT
T ss_pred             ccCCCCEEEEEEECccCCCCcEEEEEECCEecC-CccccceecCCCCcEEEEEEeEEC---CCCCCEEEEEEEeCC
Confidence            4568888999999996433  678998865442 111111222222334344555554   344558999998754

>d7fabh1 b.1.1.1 (H:1-116) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=98.13  E-value=3.3e-05  Score=35.10  Aligned_cols=73  Identities=18%  Similarity=0.261  Sum_probs=46.6

Q ss_pred             eecCCCcEEEEEEeeeccc--ceeEEeecc--cee--E---ec----------ccceEEEEeccccceEEEEEEEccCCC
Q psy4613          12 GAPIDTDVTLECYVEAYPK--SINYWVRDQ--GDM--V---IS----------SERYEVESISRSIFDFKMRLTIKKITK   72 (96)
Q Consensus        12 ~~~~g~~~~l~c~~~~~~~--~~~~w~~~~--~~~--~---~~----------~~~~~~~~~~~~~~~~~~~l~i~~~~~   72 (96)
                      .+++|+++.|.|.+.+...  ..+.|++..  ..+  +   ..          ..|+.+.....   .....|.|.+++.
T Consensus        11 lvkPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwlg~i~~~~~~~y~~~~kgR~tis~D~s---~~~~~L~i~~L~~   87 (116)
T d7fabh1          11 LVRPSQTLSLTCTVSGTSFDDYYWTWVRQPPGRGLEWIGYVFYTGTTLLDPSLRGRVTMLVNTS---KNQFSLRLSSVTA   87 (116)
T ss_dssp             EECTTSCEEEEEEEESSCSTTSEEEEEEECTTSCCEEEEEECTTSCEEECGGGTTTEEEEEETT---TTEEEEEECSCCG
T ss_pred             eECCCCCEEEEEEEeeecCCCCcceeceECCCCcceeeeeecccccceeccceeecceeecccc---hhhhhcccccccc
Confidence            4678999999999987543  367787642  111  1   00          12333332111   1246689999999


Q ss_pred             CCCeeEEEEEecCCC
Q psy4613          73 YDLGSYKCIAKNSLG   87 (96)
Q Consensus        73 ~d~g~y~c~~~~~~g   87 (96)
                      +|.+.|.|......+
T Consensus        88 eDtAvYyCAr~~~~~  102 (116)
T d7fabh1          88 ADTAVYYCARNLIAG  102 (116)
T ss_dssp             GGCEEEEEEEECSSS
T ss_pred             ccceEEEeeeecCCC
Confidence            999999998765433

>d1uvqa1 b.1.1.2 (A:85-183) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=98.13  E-value=2.9e-05  Score=34.37  Aligned_cols=70  Identities=17%  Similarity=0.130  Sum_probs=40.9

Q ss_pred             ecCCCcEEEEEEeeecccc--eeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecC
Q psy4613          13 APIDTDVTLECYVEAYPKS--INYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNS   85 (96)
Q Consensus        13 ~~~g~~~~l~c~~~~~~~~--~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~   85 (96)
                      ...++..+|.|.+.+.-+.  .+.|.+++................+..+...+.|.+..   .+...|.|.+...
T Consensus        16 ~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~dgtf~~~s~l~v~~---~~~~~ytC~V~H~   87 (99)
T d1uvqa1          16 VTLGQPNTLICLVDNIFPPVVNITWLSNGQSVTEGVSETSFLSKSDHSFFKISYLTFLP---SADEIYDCKVEHW   87 (99)
T ss_dssp             CCTTSCEEEEEEEEEECSSCCEEEEEETTEEECTTEEECCCEECTTSCEEEEEEEEECC---CTTCCEEEEEECT
T ss_pred             ccCCCcEEEEEEEEEEECCCCEEEEEECCEeccCCcEecceEECCCCCEEEEEEEEEcC---CCCCEEEEEEEeC
Confidence            4467788999999986433  68899886544211011111122223444455566654   3334799999865

>d1yjdc1 b.1.1.1 (C:1-118) CD28 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD28
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.12  E-value=3.5e-05  Score=35.06  Aligned_cols=23  Identities=9%  Similarity=0.212  Sum_probs=19.9

Q ss_pred             EEEEEEccCCCCCCeeEEEEEec
Q psy4613          62 KMRLTIKKITKYDLGSYKCIAKN   84 (96)
Q Consensus        62 ~~~l~i~~~~~~d~g~y~c~~~~   84 (96)
                      ...|.|.+++..|++.|.|....
T Consensus        76 ~~~L~I~~l~~~DsavYyCa~~~   98 (118)
T d1yjdc1          76 SVTFYLQNLYVNQTDIYFCKIEV   98 (118)
T ss_dssp             EEEEEEESCCGGGCEEEEEEEEE
T ss_pred             eEEEEECCCCcccCeEEEEEEec
Confidence            35799999999999999998654

>d1fp5a2 b.1.1.2 (A:439-543) Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.11  E-value=6.8e-06  Score=36.80  Aligned_cols=74  Identities=14%  Similarity=0.186  Sum_probs=41.2

Q ss_pred             cCCCcEEEEEEeeeccc--ceeEEeeccceeEecccce-EEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCC
Q psy4613          14 PIDTDVTLECYVEAYPK--SINYWVRDQGDMVISSERY-EVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLG   87 (96)
Q Consensus        14 ~~g~~~~l~c~~~~~~~--~~~~w~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g   87 (96)
                      ..++.++|.|.+.+..+  -.+.|.+++.......... .........+...+.|.+..-.-.....|.|.+.....
T Consensus        17 ~~~~~vtL~Clv~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~~W~~g~~ytC~V~H~~l   93 (105)
T d1fp5a2          17 GSRDKRTLACLIQNFMPEDISVQWLHNEVQLPDARHSTTQPRKTKGSGFFVFSRLEVTRAEWEQKDEFICRAVHEAA   93 (105)
T ss_dssp             SSSCCEEEEEEEEEEBSSCCEEEEEETTEECCGGGEEECCCEECSSSCEEEEEEEEECHHHHTTGGGEEEEEECTTS
T ss_pred             hcCCcEEEEEEEEeeeCCCcEEEEEECCEECCCceeEeeeeEecCCCCEEEEEEEEECHHHcCCCCEEEEEEEECCC
Confidence            45667999999988543  3788988765432111000 01112222343456666654332334489999987533

>d1dr9a2 b.1.1.3 (A:106-200) CD80, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD80, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.10  E-value=3.2e-05  Score=33.92  Aligned_cols=72  Identities=14%  Similarity=0.289  Sum_probs=45.3

Q ss_pred             ecCCCcEEEEEEeee-cccceeEEeeccceeEecccceEEEEe-ccccceEEEEEEEccCCCCCCeeEEEEEecCCCce
Q psy4613          13 APIDTDVTLECYVEA-YPKSINYWVRDQGDMVISSERYEVESI-SRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEV   89 (96)
Q Consensus        13 ~~~g~~~~l~c~~~~-~~~~~~~w~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~   89 (96)
                      ...++.+.|.|.+.+ .|.+.+.|.+++....  ......... ....+...+.|.+..   .+...|.|.+....-..
T Consensus        13 ~~s~~~~~L~C~~~g~~P~~~V~W~~n~~~~~--~~~~~~~~~~~~g~y~v~S~L~v~~---~~~~~~tC~V~h~~l~~   86 (95)
T d1dr9a2          13 IPTSNIRRIICSTSGGFPEPHLSWLENGEELN--AINTTVSQDPETELYAVSSKLDFNM---TTNHSFMCLIKYGHLRV   86 (95)
T ss_dssp             CSSTTEEEEEEEEEEESSCEEEEEEESSCEEC--CSEEEEEECTTTCCEEEEEEEEEET---TSCEEEEEEEEETTCCE
T ss_pred             cCCCCEEEEEEEECcccCCCEEEEecCCcEec--ccceeeEecCCCccEEEEEEEEccC---CccceEEEEEEecCCCC
Confidence            345777899999987 6888999998765543  122222222 223454566676653   34468999998764433

>d1hdmb1 b.1.1.2 (B:88-185) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=98.10  E-value=3.3e-05  Score=34.11  Aligned_cols=72  Identities=15%  Similarity=0.224  Sum_probs=42.2

Q ss_pred             ecCCCcEEEEEEeeecccc--eeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCC
Q psy4613          13 APIDTDVTLECYVEAYPKS--INYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLG   87 (96)
Q Consensus        13 ~~~g~~~~l~c~~~~~~~~--~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g   87 (96)
                      ...++.++|.|.+.+.-+.  .+.|.+++................+..|...+.|.+..   .+...|.|.+....-
T Consensus        14 ~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~s~L~v~~---~~~~~ytC~V~H~sl   87 (98)
T d1hdmb1          14 FNTREPVMLACYVWGFYPAEVTITWRKNGKLVMHSSAHKTAQPNGDWTYQTLSHLALTP---SYGDTYTCVVEHIGA   87 (98)
T ss_dssp             CSSSCSEEEEEEEEEEBSSCCEEEEEETTEECCCCCSBCCCEECSSSCEEEEEEEEECC---CTTCCEEEEEECTTS
T ss_pred             ccCCCcEEEEEEEEEEECCCCEEEEEECCEeccCCeEeCceEECCCCCEEEEEEeEcCC---CCCCEEEEEEEeCCC
Confidence            4456788999999996433  78899887554321111112222233444455566543   334479999987543

>d1f3dh1 b.1.1.1 (H:1-121) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.10  E-value=3.9e-05  Score=34.81  Aligned_cols=69  Identities=14%  Similarity=0.243  Sum_probs=44.0

Q ss_pred             eecCCCcEEEEEEeeecc--cceeEEeecc--ceeE-----ec-----------ccceEEEEeccccceEEEEEEEccCC
Q psy4613          12 GAPIDTDVTLECYVEAYP--KSINYWVRDQ--GDMV-----IS-----------SERYEVESISRSIFDFKMRLTIKKIT   71 (96)
Q Consensus        12 ~~~~g~~~~l~c~~~~~~--~~~~~w~~~~--~~~~-----~~-----------~~~~~~~~~~~~~~~~~~~l~i~~~~   71 (96)
                      .+.+|+++.|.|.+.+..  ...+.|++..  ..+.     ..           ..|+.+......   ....|.|.+++
T Consensus        11 ~~kPG~sl~LsC~~SG~s~~~y~~~W~RQ~PGkglewl~~i~~~~~~~~y~~~~~gRftis~D~s~---~t~~L~i~~l~   87 (115)
T d1f3dh1          11 LVKPGASVKVSCKASGYSFIDYNIHWVKQSHGKSLEWIGYIVPYSGGTTFNQKFKGKATLTVDKSS---STAFMHLNSLT   87 (115)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGBTTEEEEEETTT---TEEEEEECSCC
T ss_pred             EECCCCCEEEEEEEccccCCCCCcceeEEcCCCccEEeeccCCCCCcccccceeeEEEEEeeccCc---eeeEeeeeecC
Confidence            478899999999988754  3367888642  1111     00           123333321111   23569999999


Q ss_pred             CCCCeeEEEEEe
Q psy4613          72 KYDLGSYKCIAK   83 (96)
Q Consensus        72 ~~d~g~y~c~~~   83 (96)
                      .+|.+.|+|...
T Consensus        88 ~eDtAvYYCAr~   99 (115)
T d1f3dh1          88 FEDSAVYYCAND   99 (115)
T ss_dssp             GGGCEEEEEEEC
T ss_pred             cCCcEEEEEecc
Confidence            999999999754

>d1sjva_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=98.10  E-value=1.3e-05  Score=35.88  Aligned_cols=69  Identities=16%  Similarity=0.318  Sum_probs=42.8

Q ss_pred             ecCCCcEEEEEEeeecc--cceeEEeecc----ceeE---ec----------ccceEEEEeccccceEEEEEEEccCCCC
Q psy4613          13 APIDTDVTLECYVEAYP--KSINYWVRDQ----GDMV---IS----------SERYEVESISRSIFDFKMRLTIKKITKY   73 (96)
Q Consensus        13 ~~~g~~~~l~c~~~~~~--~~~~~w~~~~----~~~~---~~----------~~~~~~~~~~~~~~~~~~~l~i~~~~~~   73 (96)
                      +++|+++.|.|.+.+..  ...+.|++..    .+.+   ..          ..++.+......   ....|.|.+++.+
T Consensus         5 vkPG~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewi~~i~~~g~t~y~~~~kgR~tiSrd~s~---n~~~L~i~~l~~e   81 (107)
T d1sjva_           5 VQAGESLKLSCAASGNTFSGGFMGWYRQAPGKQRELVATINSRGITNYADFVKGRFTISRDNAK---KTVYLEMNSLEPE   81 (107)
T ss_dssp             CCTTCCEEEEECCCC-----CCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTCEEEEECTTT---CCEEEEECSCCGG
T ss_pred             ecCCCCcEEEEEECCCCccCCcEEEEEeCCccceeeeeeeeeccccccccccccceEEecCCce---eEEEEeecCCCcc
Confidence            57899999999988643  3367788742    1111   00          123334332211   2356999999999


Q ss_pred             CCeeEEEEEec
Q psy4613          74 DLGSYKCIAKN   84 (96)
Q Consensus        74 d~g~y~c~~~~   84 (96)
                      |.+.|.|....
T Consensus        82 DtAvYyCA~~~   92 (107)
T d1sjva_          82 DTAVYYCYTHY   92 (107)
T ss_dssp             GCSEEEEEECC
T ss_pred             cceeeeEeccC
Confidence            99999997643

>d1qnzh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.09  E-value=2.3e-05  Score=35.85  Aligned_cols=70  Identities=14%  Similarity=0.257  Sum_probs=44.4

Q ss_pred             eecCCCcEEEEEEeeecc--cceeEEeecc--ce--eE---ec-----------ccceEEEEeccccceEEEEEEEccCC
Q psy4613          12 GAPIDTDVTLECYVEAYP--KSINYWVRDQ--GD--MV---IS-----------SERYEVESISRSIFDFKMRLTIKKIT   71 (96)
Q Consensus        12 ~~~~g~~~~l~c~~~~~~--~~~~~w~~~~--~~--~~---~~-----------~~~~~~~~~~~~~~~~~~~l~i~~~~   71 (96)
                      .+++|+++.|.|.+.+..  ...+.|++..  ..  ..   ..           ..|+.+......   ....|.|.+++
T Consensus        11 ~~kpG~Sv~LsC~~SG~s~~~y~~~WyRQ~PGkgle~l~~i~~~~~~~~y~~~~~gR~tis~d~s~---~~~~L~i~~L~   87 (119)
T d1qnzh_          11 LVKPGASVKMSCKASGYTFTTYPIEWMKQNHGKSLEWIGNFHPYSDDTNYNEKFKGKAKLTVEKSS---STVYLEFSRLT   87 (119)
T ss_dssp             EECTTEEEEEEEEEETCCSSSSCEEEEEEETTSCCEEEEEEETTTTEECCCTTTTTTEEEEEETTT---TEEEEEEEEEC
T ss_pred             eECCCCCEEEEEEEeccCCCCCCcceeeecCCCcceEeeccCCcccccchhhhhcccceeeccccc---ceeeeeecccC
Confidence            477899999999988644  3357888742  11  11   10           123333321111   23468999999


Q ss_pred             CCCCeeEEEEEec
Q psy4613          72 KYDLGSYKCIAKN   84 (96)
Q Consensus        72 ~~d~g~y~c~~~~   84 (96)
                      .+|.+.|.|....
T Consensus        88 ~eDsAvYYCA~~~  100 (119)
T d1qnzh_          88 SDDSAVYYCAIHY  100 (119)
T ss_dssp             GGGCEEEEEEECS
T ss_pred             ccceeEEEEEEec
Confidence            9999999997654

>d1dn0b1 b.1.1.1 (B:1-120) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=98.08  E-value=4.5e-05  Score=34.85  Aligned_cols=70  Identities=17%  Similarity=0.258  Sum_probs=45.5

Q ss_pred             eecCCCcEEEEEEeeecccc--eeEEeecc--cee--E---ec----------ccceEEEEeccccceEEEEEEEccCCC
Q psy4613          12 GAPIDTDVTLECYVEAYPKS--INYWVRDQ--GDM--V---IS----------SERYEVESISRSIFDFKMRLTIKKITK   72 (96)
Q Consensus        12 ~~~~g~~~~l~c~~~~~~~~--~~~w~~~~--~~~--~---~~----------~~~~~~~~~~~~~~~~~~~l~i~~~~~   72 (96)
                      .+++|+++.|.|.+.+....  .+.|++..  ..+  .   ..          ..++.+......   ....|.|.+++.
T Consensus        11 ~vkPG~sl~LsC~~SG~~~~~y~~~W~RQ~PGkglewv~~i~~~~~~~y~~~~kgRftiS~D~s~---nt~~L~i~~l~~   87 (120)
T d1dn0b1          11 LLKPSETLSLTCAVYGGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSK---NQFSLKLSSVTA   87 (120)
T ss_dssp             EECTTSCEEEEEEEESSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTT---TEEEEEECSCCG
T ss_pred             EECCCCCEEEEEEEccccCccCcceeeeECCCccceeeeeccccccchhccceeeeeEEeccCch---heeccccccccc
Confidence            46789999999999886543  57788742  111  1   00          134444432211   235699999999


Q ss_pred             CCCeeEEEEEec
Q psy4613          73 YDLGSYKCIAKN   84 (96)
Q Consensus        73 ~d~g~y~c~~~~   84 (96)
                      +|.+.|.|....
T Consensus        88 eDtA~YYCAr~~   99 (120)
T d1dn0b1          88 ADTAVYYCARPP   99 (120)
T ss_dssp             GGCEEEEEEECS
T ss_pred             ccccEEEEEeeC
Confidence            999999997543

>d1a2yb_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 5 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 5 [TaxId: 10090]

Probab=98.07  E-value=4.6e-05  Score=34.60  Aligned_cols=70  Identities=14%  Similarity=0.315  Sum_probs=45.2

Q ss_pred             eecCCCcEEEEEEeeecccc--eeEEeecc--c--eeE---ec----------ccceEEEEeccccceEEEEEEEccCCC
Q psy4613          12 GAPIDTDVTLECYVEAYPKS--INYWVRDQ--G--DMV---IS----------SERYEVESISRSIFDFKMRLTIKKITK   72 (96)
Q Consensus        12 ~~~~g~~~~l~c~~~~~~~~--~~~w~~~~--~--~~~---~~----------~~~~~~~~~~~~~~~~~~~l~i~~~~~   72 (96)
                      .+++|+++.|.|.+.|....  .+.|++..  .  +.+   ..          ..|+.+......   ....|.|.+++.
T Consensus        11 ~vkPg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewlg~i~~~~~~~y~~s~kgR~tis~D~s~---n~~~L~~~~l~~   87 (116)
T d1a2yb_          11 LVAPSQSLSITCTVSGFSLTGYGVNWVRQPPGKGLEWLGMIWGDGNTDYNSALKSRLSISKDNSK---SQVFLKMNSLHT   87 (116)
T ss_dssp             EECTTSCEEEEEEEESSCTTSSEEEEEEECTTSCCEEEEEECTTSCEEECTTTGGGEEEEEEGGG---TEEEEEECSCCG
T ss_pred             eECCCCCeEEEEEEcccccCCCCCccceECCCcceeeeeecCccccceecccccccceEeccCCC---ceEEcceeeeee
Confidence            46889999999999875533  57787642  1  111   00          123333332211   235699999999


Q ss_pred             CCCeeEEEEEec
Q psy4613          73 YDLGSYKCIAKN   84 (96)
Q Consensus        73 ~d~g~y~c~~~~   84 (96)
                      +|.+.|+|....
T Consensus        88 eDTAvYYCAr~~   99 (116)
T d1a2yb_          88 DDTARYYCARER   99 (116)
T ss_dssp             GGCEEEEEEEES
T ss_pred             ccceEEEEEEeC
Confidence            999999998654

>d1indh1 b.1.1.1 (H:1-114) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=98.07  E-value=4.7e-05  Score=34.46  Aligned_cols=69  Identities=17%  Similarity=0.381  Sum_probs=44.4

Q ss_pred             eecCCCcEEEEEEeeeccc--ceeEEeecc--cee--E---ec-----------ccceEEEEeccccceEEEEEEEccCC
Q psy4613          12 GAPIDTDVTLECYVEAYPK--SINYWVRDQ--GDM--V---IS-----------SERYEVESISRSIFDFKMRLTIKKIT   71 (96)
Q Consensus        12 ~~~~g~~~~l~c~~~~~~~--~~~~w~~~~--~~~--~---~~-----------~~~~~~~~~~~~~~~~~~~l~i~~~~   71 (96)
                      .+++|+++.|.|.+.+...  ..+.|++..  ..+  .   ..           ..|+.+......   ....|.|.+++
T Consensus        11 ~vkpG~sl~LsC~~SG~~~s~~~~~WvRQ~PGkglEwv~~i~~~~~~~~y~~s~kgRftiSrD~s~---nt~~L~~~~L~   87 (114)
T d1indh1          11 SVKPGGSLKLSCAASGFTLSGETMSWVRQTPEKRLEWVATTLSGGGFTFYSASVKGRFTISRDNAQ---NNLYLQLNSLR   87 (114)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECSTTCCEEECTTTTTTEEEEEETTT---TEEEEEECSCC
T ss_pred             eECCCCCEEEEEEECccCccCCceeccccCCCCccEEeeecccccchhhhhhhheeeEEEeccCcc---ceeeeeeeeec
Confidence            4788999999999987643  357787642  111  1   00           123444332211   23569999999


Q ss_pred             CCCCeeEEEEEe
Q psy4613          72 KYDLGSYKCIAK   83 (96)
Q Consensus        72 ~~d~g~y~c~~~   83 (96)
                      .+|.+.|.|...
T Consensus        88 ~eDtAvYYCA~~   99 (114)
T d1indh1          88 SEDTALYFCASH   99 (114)
T ss_dssp             GGGCEEEEEECG
T ss_pred             cCcccEEEECCC
Confidence            999999999753

>d1eapb1 b.1.1.1 (B:1-124) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.06  E-value=5e-05  Score=34.62  Aligned_cols=69  Identities=14%  Similarity=0.277  Sum_probs=44.7

Q ss_pred             eecCCCcEEEEEEeeecccc--eeEEeecc--cee--E---ec-----------ccceEEEEeccccceEEEEEEEccCC
Q psy4613          12 GAPIDTDVTLECYVEAYPKS--INYWVRDQ--GDM--V---IS-----------SERYEVESISRSIFDFKMRLTIKKIT   71 (96)
Q Consensus        12 ~~~~g~~~~l~c~~~~~~~~--~~~w~~~~--~~~--~---~~-----------~~~~~~~~~~~~~~~~~~~l~i~~~~   71 (96)
                      .+++|+++.|.|.+.+....  .+.|++..  ..+  .   ..           ..++.+......   ....|.|.+++
T Consensus        11 ~~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgRftiSrD~s~---nt~~L~~~sL~   87 (119)
T d1eapb1          11 LVKPGASVKISCKASGYISTDHAIHWVKQRPEQGLEWIGYISPGNGDIKYNEKFKVKATLTADQSS---STAYMQLNSLT   87 (119)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEECSSSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGG---TEEEEEECSCC
T ss_pred             eECCCCCEEEEEEEccCcccCCCCccceeCCcccceeeeecCCcccchhhhhhhhcceEEEcccCc---ceEEeeeeccc
Confidence            46789999999999876533  57888642  111  1   10           124444332211   23579999999


Q ss_pred             CCCCeeEEEEEe
Q psy4613          72 KYDLGSYKCIAK   83 (96)
Q Consensus        72 ~~d~g~y~c~~~   83 (96)
                      .+|.+.|+|...
T Consensus        88 ~eDTAvYYCAr~   99 (119)
T d1eapb1          88 SEDSAVYFCKRS   99 (119)
T ss_dssp             GGGCEEEEEEEC
T ss_pred             CCcceEEEEEEe
Confidence            999999999754

>d1nlbh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.06  E-value=5e-05  Score=34.56  Aligned_cols=71  Identities=15%  Similarity=0.222  Sum_probs=45.4

Q ss_pred             eeecCCCcEEEEEEeeeccc--ceeEEeecc--c--eeE---ec-----------ccceEEEEeccccceEEEEEEEccC
Q psy4613          11 VGAPIDTDVTLECYVEAYPK--SINYWVRDQ--G--DMV---IS-----------SERYEVESISRSIFDFKMRLTIKKI   70 (96)
Q Consensus        11 ~~~~~g~~~~l~c~~~~~~~--~~~~w~~~~--~--~~~---~~-----------~~~~~~~~~~~~~~~~~~~l~i~~~   70 (96)
                      ..+++|+++.|.|.+.+...  ..+.|++..  .  +..   ..           ..|+.+......   ....|.|.++
T Consensus        10 ~~~kPG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwvg~i~~~~~~~~ya~~~kgRftisrD~s~---~tvyL~~~~L   86 (118)
T d1nlbh1          10 ELKKPGETVKISCKASGYTFTDFSMHWVNQAPGKGLNWMGWVNTETGEPTYADDFKGRFAFSLETSA---STAYLQINSL   86 (118)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGSSSEEEEEEGGG---TEEEEEECSC
T ss_pred             ceECCCCCEEEEEEEcCCCCCCCceeccccCCCccceeeeecCcccccchhhhheeeeeEEEecCCc---eeEEeeeeec
Confidence            34789999999999987553  367787642  1  111   00           123444332211   2356899999


Q ss_pred             CCCCCeeEEEEEec
Q psy4613          71 TKYDLGSYKCIAKN   84 (96)
Q Consensus        71 ~~~d~g~y~c~~~~   84 (96)
                      +.+|.+.|+|....
T Consensus        87 ~~eDtAvYYCAr~~  100 (118)
T d1nlbh1          87 KNEDTATYFCARFL  100 (118)
T ss_dssp             CGGGCEEEEEEEEC
T ss_pred             ccCcceEEEEeeeC
Confidence            99999999997543

>d1o0va1 b.1.1.2 (A:228-330) Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.06  E-value=4.5e-05  Score=33.96  Aligned_cols=75  Identities=17%  Similarity=0.265  Sum_probs=42.4

Q ss_pred             CCCcEEEEEEeeec-ccc-eeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCceE
Q psy4613          15 IDTDVTLECYVEAY-PKS-INYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVE   90 (96)
Q Consensus        15 ~g~~~~l~c~~~~~-~~~-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~~   90 (96)
                      .+..+.|.|.+.+. |.. .+.|.+++..... .............+...+.|.+..-.-.....|.|.+........
T Consensus        20 ~~~tv~L~Cl~~~f~P~~i~v~W~~~g~~~~~-~~~~~~~~~~~~~y~~~S~L~v~~~~w~~~~~ytC~V~H~~~t~~   96 (104)
T d1o0va1          20 FPPTIQLLCLVSGYTPGTIQITWLEDGQVMDV-DLSTASTTQEGELASTQSELTLSQKHWLSDRTYTCQVTYQGHTFE   96 (104)
T ss_dssp             CCSEEEEEEEEEEECCCCEEEEEEETTEECCG-GGEEEEEEEETTEEEEEEEEEEEHHHHHTTCCEEEEEEETTEEEE
T ss_pred             CCCeEEEEEEEEEEECCCcEEEEEECCEEccC-CceeeeEeCCCCeEEEEEEEEECHHHcCCCCEEEEEEEECCEeEE
Confidence            45568899999984 444 6889988655431 111111122222333456666655332234479999988654433

>d1tjgh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=98.05  E-value=5.7e-05  Score=35.10  Aligned_cols=70  Identities=16%  Similarity=0.325  Sum_probs=44.6

Q ss_pred             eecCCCcEEEEEEeeeccc----ceeEEeeccc----eeE---ec----------ccceEEEEeccccceEEEEEEEccC
Q psy4613          12 GAPIDTDVTLECYVEAYPK----SINYWVRDQG----DMV---IS----------SERYEVESISRSIFDFKMRLTIKKI   70 (96)
Q Consensus        12 ~~~~g~~~~l~c~~~~~~~----~~~~w~~~~~----~~~---~~----------~~~~~~~~~~~~~~~~~~~l~i~~~   70 (96)
                      .+++|+++.|.|.+.+...    ..+.|++...    +.+   ..          ..|+.+......   ....|.|.++
T Consensus        11 ~vkpg~Sl~LsC~~SG~~~s~~~~~~~WyRQ~pG~~le~l~~i~~~~~~~y~~~~k~Rftis~d~s~---~~~~L~i~~l   87 (132)
T d1tjgh1          11 LVKPTQTLTLTCSFSGFSLSDFGVGVGWIRQPPGKALEWLAIIYSDDDKRYSPSLNTRLTITKDTSK---NQVVLVMTRV   87 (132)
T ss_dssp             EECTTCCEEEEEEEESSCTTSTTCEEEEEEECTTSCCEEEEEEETTSCEEECGGGTTTEEEEEETTT---TEEEEEECSC
T ss_pred             eECCCCCeEEEEEEeCCCcCCCCCceEEEEECCCcccEEEEEecCCCccEeeeeeeecceecccccc---cEEEcccccC
Confidence            4778999999999887542    2578986421    111   00          123333321111   2356999999


Q ss_pred             CCCCCeeEEEEEec
Q psy4613          71 TKYDLGSYKCIAKN   84 (96)
Q Consensus        71 ~~~d~g~y~c~~~~   84 (96)
                      +.+|.+.|.|....
T Consensus        88 ~~eDtAvYYCAr~~  101 (132)
T d1tjgh1          88 SPVDTATYFCAHRR  101 (132)
T ss_dssp             CGGGCEEEEEEEEC
T ss_pred             CcccceEEEEEEec
Confidence            99999999998654

>d1um5h1 b.1.1.1 (H:3-119) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.05  E-value=5.2e-05  Score=34.48  Aligned_cols=71  Identities=17%  Similarity=0.301  Sum_probs=45.5

Q ss_pred             eeecCCCcEEEEEEeeeccc--ceeEEeecc--cee-----Eec-----------ccceEEEEeccccceEEEEEEEccC
Q psy4613          11 VGAPIDTDVTLECYVEAYPK--SINYWVRDQ--GDM-----VIS-----------SERYEVESISRSIFDFKMRLTIKKI   70 (96)
Q Consensus        11 ~~~~~g~~~~l~c~~~~~~~--~~~~w~~~~--~~~-----~~~-----------~~~~~~~~~~~~~~~~~~~l~i~~~   70 (96)
                      ..+++|+++.|.|.+.+...  -.+.|++..  ..+     +..           ..|+.+.....   .....|.|.++
T Consensus         9 ~~~kPG~sl~LsC~~SG~~~~~y~~~WvRQ~pGkglewl~~i~~~~~~~~y~~~~kgRftiS~D~s---~~t~~L~m~sL   85 (117)
T d1um5h1           9 VLVKPGGSVKMSCKASEYTLTSYLFQWVKQKSGQGLEWIGYIYPYNGGTRYNEKFRGKATLTSDKS---SNTAYLELSSL   85 (117)
T ss_dssp             EEECTTCCEEEEEEESSCCCSCCEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTCEEEEEETT---TTEEEEEECSC
T ss_pred             ceECCCCCEEEEEEEccccCCCCcCccceeCCCccceeeeecCCccCccccccceeeeEEEEeccC---ceeEeeccccc
Confidence            45788999999999987543  367888642  111     110           12333332211   12356999999


Q ss_pred             CCCCCeeEEEEEec
Q psy4613          71 TKYDLGSYKCIAKN   84 (96)
Q Consensus        71 ~~~d~g~y~c~~~~   84 (96)
                      +.+|.+.|+|....
T Consensus        86 ~~eDtAvYYCAr~~   99 (117)
T d1um5h1          86 TSEDSAVYYCARSS   99 (117)
T ss_dssp             CGGGCEEEEEEEEE
T ss_pred             CCCcceEEEEeecc
Confidence            99999999998544

>d1ol0a_ b.1.1.1 (A:) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=98.04  E-value=5.7e-05  Score=34.58  Aligned_cols=70  Identities=14%  Similarity=0.270  Sum_probs=44.8

Q ss_pred             eecCCCcEEEEEEeeeccc--ceeEEeecc--cee--E---e-----------cccceEEEEeccccceEEEEEEEccCC
Q psy4613          12 GAPIDTDVTLECYVEAYPK--SINYWVRDQ--GDM--V---I-----------SSERYEVESISRSIFDFKMRLTIKKIT   71 (96)
Q Consensus        12 ~~~~g~~~~l~c~~~~~~~--~~~~w~~~~--~~~--~---~-----------~~~~~~~~~~~~~~~~~~~~l~i~~~~   71 (96)
                      .+++|+++.|.|.+.+...  ..+.|++..  ..+  .   .           ...|+.+......   ....|.|.+++
T Consensus        11 ~vkpg~sl~LsC~~SG~s~s~y~~~W~RQ~PGkglewlg~i~~~~~~~~y~~~~kgR~tis~D~s~---~~~~L~i~sL~   87 (121)
T d1ol0a_          11 LVQPGGSLRLSCAASGFTFSSYAMSWFRQAPGKEREIVSAVSGSGGSTYYADSVRGRFTISRDNSK---NTLYLQMNSLR   87 (121)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECTTSCCEEECGGGTTTEEEEEETTT---TEEEEEECSCC
T ss_pred             eECCCCCeEEEEEEcCcCCcCCceEcceeCCCcceeeeeecCCcccccccchheeeeeEEeccccc---eeEEeeeeecc
Confidence            4678999999999987543  357787642  111  1   0           0123333332111   23569999999


Q ss_pred             CCCCeeEEEEEec
Q psy4613          72 KYDLGSYKCIAKN   84 (96)
Q Consensus        72 ~~d~g~y~c~~~~   84 (96)
                      .+|.+.|+|....
T Consensus        88 ~eDtAvYYCAr~~  100 (121)
T d1ol0a_          88 AEDTAVYYCAREP  100 (121)
T ss_dssp             GGGCEEEEEEECC
T ss_pred             cccceEEEEEEec
Confidence            9999999998654

>d1ai1h1 b.1.1.1 (H:1-112) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]

Probab=98.02  E-value=6.5e-05  Score=34.34  Aligned_cols=70  Identities=17%  Similarity=0.285  Sum_probs=44.8

Q ss_pred             eecCCCcEEEEEEeeeccc----ceeEEeecc--ceeE-----ec----------ccceEEEEeccccceEEEEEEEccC
Q psy4613          12 GAPIDTDVTLECYVEAYPK----SINYWVRDQ--GDMV-----IS----------SERYEVESISRSIFDFKMRLTIKKI   70 (96)
Q Consensus        12 ~~~~g~~~~l~c~~~~~~~----~~~~w~~~~--~~~~-----~~----------~~~~~~~~~~~~~~~~~~~l~i~~~   70 (96)
                      .+++|+++.|.|.+.|...    -.+.|++..  ..+.     ..          ..|+.+......   ....|.|.++
T Consensus        11 ~vkPg~sl~LsC~~SG~s~~~s~y~~~W~RQ~PGkglEwl~~i~~~g~t~y~~s~kgRfTiSrD~s~---n~~~L~~~sL   87 (120)
T d1ai1h1          11 VIKPSQSLSLTCIVSGFSITRTNYCWHWIRQAPGKGLEWMGRICYEGSIYYSPSIKSRSTISRDTSL---NKFFIQLISV   87 (120)
T ss_dssp             EECSSSCEEEEEEEESSCTTSTTEEEEEEEECTTSCEEEEEEEETTSCEEECHHHHTTEEEEEETTT---TEEEEEESSC
T ss_pred             eECCCCCEEEEEEEcccccccCccccCcccCCCcccceeeeecccccchhhchhhcccceecccccc---ceeecceeee
Confidence            4678999999999987542    256787642  1111     11          124444332211   2356999999


Q ss_pred             CCCCCeeEEEEEec
Q psy4613          71 TKYDLGSYKCIAKN   84 (96)
Q Consensus        71 ~~~d~g~y~c~~~~   84 (96)
                      +.+|.+.|.|....
T Consensus        88 ~~eDtAvYYCAr~~  101 (120)
T d1ai1h1          88 TNEDTAMYYCSREN  101 (120)
T ss_dssp             CGGGCEEEEEEEEE
T ss_pred             eccceeEEEEEecC
Confidence            99999999998543

>d1j05b_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.01  E-value=6.6e-05  Score=34.38  Aligned_cols=71  Identities=14%  Similarity=0.275  Sum_probs=45.1

Q ss_pred             eeecCCCcEEEEEEeeecc--cceeEEeecc--cee--E---ec-----------ccceEEEEeccccceEEEEEEEccC
Q psy4613          11 VGAPIDTDVTLECYVEAYP--KSINYWVRDQ--GDM--V---IS-----------SERYEVESISRSIFDFKMRLTIKKI   70 (96)
Q Consensus        11 ~~~~~g~~~~l~c~~~~~~--~~~~~w~~~~--~~~--~---~~-----------~~~~~~~~~~~~~~~~~~~l~i~~~   70 (96)
                      ..+++|+++.|.|.+.+..  ...+.|++..  ..+  .   ..           ..++.+.....   .....|.|.++
T Consensus        10 ~~~kpG~sv~LsC~~SG~~~s~~~~~W~RQ~PGkgle~l~~i~~~~~~~~y~~~~kgR~tis~D~s---~~t~~L~i~~L   86 (121)
T d1j05b_          10 ELVEPGASVKLSCTASGFNIKDTYMHWVKQRPEQGLEWIGRIDPANGNSKYVPKFQGKATITADTS---SNTAYLQLTSL   86 (121)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSEEEEEEECTTCCCEEEEEEETTTTEEEECGGGTTTEEEEEEGG---GTEEEEEECSC
T ss_pred             ceECCCCCEEEEEEEecCCCCCCCcceeeECCCCccccccccCCcCCccccchhhccceEEEeecC---Cceeeeccccc
Confidence            3478999999999988754  3367887642  111  1   10           11333332111   12356999999


Q ss_pred             CCCCCeeEEEEEec
Q psy4613          71 TKYDLGSYKCIAKN   84 (96)
Q Consensus        71 ~~~d~g~y~c~~~~   84 (96)
                      +.+|.+.|+|....
T Consensus        87 ~~eDtAvYYCAr~~  100 (121)
T d1j05b_          87 TSEDTAVYYCAPFG  100 (121)
T ss_dssp             CGGGCEEEEEEEEB
T ss_pred             CcCcceEEEeEeec
Confidence            99999999998654

>d2jelh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.00  E-value=6.8e-05  Score=34.12  Aligned_cols=70  Identities=14%  Similarity=0.243  Sum_probs=45.1

Q ss_pred             eeecCCCcEEEEEEeeecccc--eeEEeecc--cee--E---ec-----------ccceEEEEeccccceEEEEEEEccC
Q psy4613          11 VGAPIDTDVTLECYVEAYPKS--INYWVRDQ--GDM--V---IS-----------SERYEVESISRSIFDFKMRLTIKKI   70 (96)
Q Consensus        11 ~~~~~g~~~~l~c~~~~~~~~--~~~w~~~~--~~~--~---~~-----------~~~~~~~~~~~~~~~~~~~l~i~~~   70 (96)
                      ..+++|+++.|.|.+.|....  .+.|++..  ..+  .   ..           ..|+.+......   ....|.|.++
T Consensus        10 ~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglewlg~i~~~~~~~~y~~~~kgR~tiS~D~s~---~t~~L~~~sL   86 (118)
T d2jelh1          10 ELVRPGVSVKISCKGSGYTFTTYAMHWVKQSHAKSLEWIGLISTYSGYTNYNQKFKGKATMTVDKSS---STAYMELARL   86 (118)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSEEEEEEECSSSSEEEEEEECTTTCCEEECGGGBTTEEEEEEGGG---TEEEEEECSC
T ss_pred             ceECCCCCEEEEEEEcCCCCCCCceecceeCCCcccccccccCCcCCcchhhhhhcccEEEecccCc---ceEeeccccc
Confidence            347889999999999876543  67887642  111  1   00           123333332211   2356899999


Q ss_pred             CCCCCeeEEEEEe
Q psy4613          71 TKYDLGSYKCIAK   83 (96)
Q Consensus        71 ~~~d~g~y~c~~~   83 (96)
                      +.+|.+.|+|...
T Consensus        87 ~~eDTAvYYCAr~   99 (118)
T d2jelh1          87 TSEDSAIYYCARV   99 (118)
T ss_dssp             CGGGCEEEEEEEE
T ss_pred             ccCcceeeeEEEe
Confidence            9999999999754

>d1c5db1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.00  E-value=6.8e-05  Score=34.06  Aligned_cols=70  Identities=19%  Similarity=0.369  Sum_probs=45.4

Q ss_pred             eecCCCcEEEEEEeeeccc--ceeEEeecc--cee--E---ec----------ccceEEEEeccccceEEEEEEEccCCC
Q psy4613          12 GAPIDTDVTLECYVEAYPK--SINYWVRDQ--GDM--V---IS----------SERYEVESISRSIFDFKMRLTIKKITK   72 (96)
Q Consensus        12 ~~~~g~~~~l~c~~~~~~~--~~~~w~~~~--~~~--~---~~----------~~~~~~~~~~~~~~~~~~~l~i~~~~~   72 (96)
                      .+++|+++.|.|.+.|...  ..+.|++..  ..+  +   ..          ..|+.+......   ....|.|.+++.
T Consensus        11 lvkPg~sl~LsC~~SG~~~~~~~~~W~RQ~PGkglewi~~i~~~~~~~y~~s~kgRftiS~D~s~---n~~~L~~~sL~~   87 (117)
T d1c5db1          11 LVQPSQTLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSK---SQVFLKMNSLQT   87 (117)
T ss_dssp             EECTTSCEEEEEEECSSCTTTCCEEEEEECTTSCCEEEEEECTTCCEEECTTTSSSEEEEEETTT---TEEEEEECSCCG
T ss_pred             eECCCCCeEEEEEEcCCCccCCceEcccCCCCcceeeeeccccccccccccccccceEEeccccc---ceeecccccccc
Confidence            4788999999999987553  367787642  111  1   00          124444432211   235689999999


Q ss_pred             CCCeeEEEEEec
Q psy4613          73 YDLGSYKCIAKN   84 (96)
Q Consensus        73 ~d~g~y~c~~~~   84 (96)
                      +|.+.|+|....
T Consensus        88 eDtAvYYCAr~~   99 (117)
T d1c5db1          88 EDTAIYFCTRED   99 (117)
T ss_dssp             GGCEEEEEEECC
T ss_pred             CcceEEEEeccC
Confidence            999999997653

>d2ck0h1 b.1.1.1 (H:1-106) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=98.00  E-value=6.5e-05  Score=33.71  Aligned_cols=71  Identities=18%  Similarity=0.356  Sum_probs=45.6

Q ss_pred             eeecCCCcEEEEEEeeecccc--eeEEeecc--cee--E---ec-------------ccceEEEEeccccceEEEEEEEc
Q psy4613          11 VGAPIDTDVTLECYVEAYPKS--INYWVRDQ--GDM--V---IS-------------SERYEVESISRSIFDFKMRLTIK   68 (96)
Q Consensus        11 ~~~~~g~~~~l~c~~~~~~~~--~~~w~~~~--~~~--~---~~-------------~~~~~~~~~~~~~~~~~~~l~i~   68 (96)
                      ..+++|+++.|.|.+.|....  .+.|++..  ..+  .   ..             ..++.+......   ....|.|.
T Consensus        10 ~~vkPG~Sl~LsC~~SG~t~~~~~~~WvRQ~PGkglEw~g~i~~~~~~~~~~ya~~~kgR~tiS~D~s~---~t~~L~i~   86 (109)
T d2ck0h1          10 GLVQPRGSLKLSCAASGFTFNTDAMNWVRQAPGKGLEWVARIRSKGFNFATYYADSVRDRFTISRDDSQ---SMLYLQMN   86 (109)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECCGGGTTCEEECTTTTTTEEEEEETTT---TEEEEEEC
T ss_pred             CeECCCCCeEEEEEECCCcccccccccceeCCCcceecccccccccccccceeccccccCceecccccc---ceeEeccc
Confidence            347889999999999875543  67787642  111  0   00             113444332211   23568999


Q ss_pred             cCCCCCCeeEEEEEec
Q psy4613          69 KITKYDLGSYKCIAKN   84 (96)
Q Consensus        69 ~~~~~d~g~y~c~~~~   84 (96)
                      +++.+|.+.|.|.-..
T Consensus        87 sL~~eDTAvYYCAr~~  102 (109)
T d2ck0h1          87 NLKTEDTGIYYCVRGR  102 (109)
T ss_dssp             SCCGGGCEEEEEEEEC
T ss_pred             CCCHhHCEEEEEEEcC
Confidence            9999999999998544

>d1d5mb1 b.1.1.2 (B:93-190) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DR group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DR group [TaxId: 9606]

Probab=97.99  E-value=5.1e-05  Score=33.45  Aligned_cols=70  Identities=14%  Similarity=0.199  Sum_probs=35.4

Q ss_pred             cCCCcEEEEEEeeecccc--eeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCC
Q psy4613          14 PIDTDVTLECYVEAYPKS--INYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSL   86 (96)
Q Consensus        14 ~~g~~~~l~c~~~~~~~~--~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~   86 (96)
                      ..+...+|.|.+.+..++  .+.|.+++................+..+...+.+.+   ...+...|.|.+....
T Consensus        16 ~~~~~~tL~C~v~~F~P~~i~v~W~~~g~~~~~~~~~~~~~~~~dgtf~~~s~l~~---~~~~~~~ytC~V~H~s   87 (98)
T d1d5mb1          16 PLQHHNLLVCSVNGFYPGSIEVRWFRNGQEEKTGVVSTGLIQNGDWTFQTLVMLET---VPRSGEVYTCQVEHPS   87 (98)
T ss_dssp             -----CEEEEEEEEEBSSCCEEEEEETTEECCSSEEECCCEECSSSCEEEEEEEEC---CCCTTCEEEEEEECTT
T ss_pred             ccCCceEEEEEEeeeECCCcEEEEEECCEEcCCCCEECeEEeCCCcEEEEEEEeeE---cCCCCCEEEEEEEECC
Confidence            446667899999985444  788998765442110000011122223323344433   3445568999998753

>d1mqkh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=97.99  E-value=7.6e-05  Score=34.20  Aligned_cols=71  Identities=15%  Similarity=0.327  Sum_probs=45.4

Q ss_pred             eecCCCcEEEEEEeeecccc--eeEEeecc--cee-----Eec-----------ccceEEEEeccccceEEEEEEEccCC
Q psy4613          12 GAPIDTDVTLECYVEAYPKS--INYWVRDQ--GDM-----VIS-----------SERYEVESISRSIFDFKMRLTIKKIT   71 (96)
Q Consensus        12 ~~~~g~~~~l~c~~~~~~~~--~~~w~~~~--~~~-----~~~-----------~~~~~~~~~~~~~~~~~~~l~i~~~~   71 (96)
                      .+++|+++.|.|.+.|....  .+.|++..  ..+     +..           ..|+.+......   ....|.|.+++
T Consensus        11 lvkPG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgR~tis~D~s~---nt~~L~i~~L~   87 (123)
T d1mqkh_          11 LVQPGGSLKLSCAASGFTFSSYTMSWVRQTPEKRLEWVASINNGGGRTYYPDTVKGRFTISRDNAK---NTLYLQMSSLK   87 (123)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECTTSSCEECCTTTBTTEEEEEEGGG---TEEEEEECSCC
T ss_pred             eECCCCCEEEEEEECcccCcCCceEeeecCCCcceeeeeecCccccccccchhccEEEEEEecCcc---cccccceeeec
Confidence            46789999999999875533  57787642  111     110           123444332211   23568999999


Q ss_pred             CCCCeeEEEEEecC
Q psy4613          72 KYDLGSYKCIAKNS   85 (96)
Q Consensus        72 ~~d~g~y~c~~~~~   85 (96)
                      .+|.+.|+|.....
T Consensus        88 ~eDtAvYYCAr~~~  101 (123)
T d1mqkh_          88 SEDTAMYYCVRHEY  101 (123)
T ss_dssp             GGGCEEEEEEEEET
T ss_pred             cCcccceeEEecCC
Confidence            99999999976543

>d1pg7x1 b.1.1.1 (X:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.98  E-value=7.7e-05  Score=34.09  Aligned_cols=70  Identities=14%  Similarity=0.341  Sum_probs=44.9

Q ss_pred             eecCCCcEEEEEEeeecc--cceeEEeecc--cee--E---ec-----------ccceEEEEeccccceEEEEEEEccCC
Q psy4613          12 GAPIDTDVTLECYVEAYP--KSINYWVRDQ--GDM--V---IS-----------SERYEVESISRSIFDFKMRLTIKKIT   71 (96)
Q Consensus        12 ~~~~g~~~~l~c~~~~~~--~~~~~w~~~~--~~~--~---~~-----------~~~~~~~~~~~~~~~~~~~l~i~~~~   71 (96)
                      .+++|+++.|.|.+.+..  ...+.|++..  ..+  .   ..           ..|+.+......   ....|.|.+++
T Consensus        11 ~vkpG~sl~LsC~~SG~s~~~~~~~W~RQ~PGk~lewl~~i~~~~~~~~y~~~~kgR~tis~d~s~---n~v~L~i~~l~   87 (120)
T d1pg7x1          11 LVKPGASVKISCKASGYSFTGHLLNWVKQSHGKNLEWIGLVHPHNGAITYNQKFKDKATLTVDRSS---TTAYIELVRLT   87 (120)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTT---TEEEEEECSCC
T ss_pred             EECCCCCEEEEEEEccccCCCCCcceeeecCCCceEEeeecCccccchhhhHHhhhcceeeeccCc---ceEEccccccC
Confidence            477899999999988754  3367888642  111  1   10           123333322211   23568999999


Q ss_pred             CCCCeeEEEEEec
Q psy4613          72 KYDLGSYKCIAKN   84 (96)
Q Consensus        72 ~~d~g~y~c~~~~   84 (96)
                      .+|.+.|+|....
T Consensus        88 ~eDtA~YYCAr~~  100 (120)
T d1pg7x1          88 SNDSAVYYCARED  100 (120)
T ss_dssp             GGGCEEEEEEEEC
T ss_pred             CCcceEEEeeecC
Confidence            9999999998654

>d2p49b1 b.1.1.1 (B:1-121) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=97.98  E-value=7.9e-05  Score=34.05  Aligned_cols=69  Identities=19%  Similarity=0.278  Sum_probs=44.0

Q ss_pred             eecCCCcEEEEEEeeeccc--ceeEEeecc--c--eeE---ec-----------ccceEEEEeccccceEEEEEEEccCC
Q psy4613          12 GAPIDTDVTLECYVEAYPK--SINYWVRDQ--G--DMV---IS-----------SERYEVESISRSIFDFKMRLTIKKIT   71 (96)
Q Consensus        12 ~~~~g~~~~l~c~~~~~~~--~~~~w~~~~--~--~~~---~~-----------~~~~~~~~~~~~~~~~~~~l~i~~~~   71 (96)
                      .+++|+++.|.|.+.+...  ..+.|++..  .  ...   ..           ..|+.+....   ......|.|.+++
T Consensus        11 lvkPg~sl~LsC~~SG~s~s~y~~~WvRQ~PGkglewv~~i~~~~~~~~Y~~s~kgRftiSrD~---s~~t~yLq~~~L~   87 (121)
T d2p49b1          11 LVQAGGSLRLSCAASGYAYTYIYMGWFRQAPGKEREGVAAMDSGGGGTLYADSVKGRFTISRDK---GKNTVYLQMDSLK   87 (121)
T ss_dssp             EEETTCCEEEEEEEESCSSCCSEEEEEEECTTSCCEEEEEEETTSCSCEECGGGTTTEEEECTT---STTEEEEEECSCC
T ss_pred             eECCCCCeEEEEEEcCCCcccCceeeccCCCCCceeeeeecCCcccccccccceeEeEEEeecC---CceEEEEEeeecc
Confidence            4678999999999987543  357787642  1  111   10           1133333211   1123568999999


Q ss_pred             CCCCeeEEEEEe
Q psy4613          72 KYDLGSYKCIAK   83 (96)
Q Consensus        72 ~~d~g~y~c~~~   83 (96)
                      .+|.+.|+|...
T Consensus        88 ~eDtAvYYCAr~   99 (121)
T d2p49b1          88 PEDTATYYCAAG   99 (121)
T ss_dssp             GGGCEEEEEEES
T ss_pred             ccceeEEeeecc
Confidence            999999999865

>d1jpth1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.97  E-value=7.9e-05  Score=33.85  Aligned_cols=71  Identities=15%  Similarity=0.247  Sum_probs=45.6

Q ss_pred             eeecCCCcEEEEEEeeecc--cceeEEeeccc--ee--E---e-----------cccceEEEEeccccceEEEEEEEccC
Q psy4613          11 VGAPIDTDVTLECYVEAYP--KSINYWVRDQG--DM--V---I-----------SSERYEVESISRSIFDFKMRLTIKKI   70 (96)
Q Consensus        11 ~~~~~g~~~~l~c~~~~~~--~~~~~w~~~~~--~~--~---~-----------~~~~~~~~~~~~~~~~~~~~l~i~~~   70 (96)
                      ..+++|+++.|.|.+.|..  ...+.|++...  .+  .   .           -..++.+......   ....|.|.++
T Consensus        10 ~~vkpg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewvg~i~~~~~~~~ya~s~kgR~tiSrD~s~---nt~yL~m~~L   86 (117)
T d1jpth1          10 GLVQPGGSLRLSCAASGFNIKEYYMHWVRQAPGKGLEWVGLIDPEQGNTIYDPKFQDRATISADNSK---NTAYLQMNSL   86 (117)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECTTTCCEEECTTTTTTEEEEEEGGG---TEEEEEECSC
T ss_pred             ceECCCCCEEEEEEEcCCCCcCCceEcceeCCCcceEeeeecccccccccccccceeeEEEEecccc---ceEEeccccc
Confidence            3478899999999999865  33677876421  11  0   0           0123444332211   2356899999


Q ss_pred             CCCCCeeEEEEEec
Q psy4613          71 TKYDLGSYKCIAKN   84 (96)
Q Consensus        71 ~~~d~g~y~c~~~~   84 (96)
                      +.+|.+.|+|....
T Consensus        87 ~~eDTAvYYCAr~~  100 (117)
T d1jpth1          87 RAEDTAVYYCARDT  100 (117)
T ss_dssp             CGGGCEEEEEEEEC
T ss_pred             CCCCceEEEEeecC
Confidence            99999999997654

>d1lk2b_ b.1.1.2 (B:) beta2-microglobulin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.96  E-value=7.3e-05  Score=32.98  Aligned_cols=70  Identities=13%  Similarity=0.186  Sum_probs=41.4

Q ss_pred             ecCCCcEEEEEEeeecccc--eeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCC
Q psy4613          13 APIDTDVTLECYVEAYPKS--INYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSL   86 (96)
Q Consensus        13 ~~~g~~~~l~c~~~~~~~~--~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~   86 (96)
                      ...|+..+|.|.+.+.-+.  .+.|.+++.... ...........+..+...+.+.+..   .+...|.|.+....
T Consensus        15 ~~~~~~~tL~C~v~gf~P~~i~V~W~~~g~~~~-~~~~~~~~~~~dgtf~~~s~l~v~~---~~~~~ytC~V~H~s   86 (99)
T d1lk2b_          15 PENGKPNILNCYVTQFHPPHIEIQMLKNGKKIP-KVEMSDMSFSKDWSFYILAHTEFTP---TETDTYACRVKHDS   86 (99)
T ss_dssp             CCTTSCEEEEEEEEEEBSSCCEEEEEETTEECT-TCEEEEEEECTTCCEEEEEEEEECC---CSSCCEEEEEECTT
T ss_pred             ccCCCcEEEEEEEEEEECCCcEEEEeeCCeecC-CcEECceeECCCCCEEEEEEeEecC---cCCCEEEEEEEeCC
Confidence            3467889999999985433  688998865432 1111122222333444455565543   34458999998653

>d1uvqb1 b.1.1.2 (B:95-191) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=97.96  E-value=6.3e-05  Score=33.10  Aligned_cols=71  Identities=13%  Similarity=0.187  Sum_probs=36.4

Q ss_pred             cCCCcEEEEEEeeecccc--eeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCC
Q psy4613          14 PIDTDVTLECYVEAYPKS--INYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLG   87 (96)
Q Consensus        14 ~~g~~~~l~c~~~~~~~~--~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g   87 (96)
                      ..++..+|.|.+.+.-+.  .+.|.+++................+..+...+.|.+.   ..+...|.|.+....-
T Consensus        14 ~~~~~~tL~C~~~gF~P~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~s~l~v~---~~~~~~ytC~V~H~sl   86 (97)
T d1uvqb1          14 ALNHHNLLVCSVTDFYPGQIKVRWFRNDQEETAGVVSTPLIRNGDWTFQILVMLEMT---PQRGDVYTCHVEHPSL   86 (97)
T ss_dssp             -----CEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEECSSSCEEEEEEEECC---SCTTCCEEEEEECTTC
T ss_pred             cCCCCEEEEEEEeeeECCCeEEEEEECCEEcCCCcEeceeecCCCceEEEEEEeccC---CCCCCEEEEEEEeCCC
Confidence            346677899999985443  7889987644321101111112222234344555553   3344589999987533

>d1vgeh1 b.1.1.1 (H:1-122) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.95  E-value=9.4e-05  Score=33.85  Aligned_cols=71  Identities=14%  Similarity=0.212  Sum_probs=45.9

Q ss_pred             eeecCCCcEEEEEEeeeccc--ceeEEeeccc--ee--E---ec-----------ccceEEEEeccccceEEEEEEEccC
Q psy4613          11 VGAPIDTDVTLECYVEAYPK--SINYWVRDQG--DM--V---IS-----------SERYEVESISRSIFDFKMRLTIKKI   70 (96)
Q Consensus        11 ~~~~~g~~~~l~c~~~~~~~--~~~~w~~~~~--~~--~---~~-----------~~~~~~~~~~~~~~~~~~~l~i~~~   70 (96)
                      ..+++|+++.|.|.+.+...  ..+.|++...  .+  .   ..           ..|+.+......   ....|.|.++
T Consensus        11 ~~vkpg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwlg~i~~~~~~~~ya~s~kgR~tiS~D~s~---ntvyL~~~~L   87 (122)
T d1vgeh1          11 EVKKPGASVKVSCKASGYSFTSYGLHWVRQAPGQRLEWMGWISAGTGNTKYSQKFRGRVTFTRDTSA---TTAYMGLSSL   87 (122)
T ss_dssp             EEECTTCCEEEEEEECSSCGGGSEEEEEEECTTSCEEEEEEEETTTCCEEECGGGTTTEEEEEETTT---TEEEEEECSC
T ss_pred             cEECCCCCEEEEEEEcCCCccCCCceeeEeCCCCceeeeeeecCcccccccccceeEeeEEeccCCc---ceeeeccccc
Confidence            45789999999999987653  3577887421  11  1   10           123333332111   2346899999


Q ss_pred             CCCCCeeEEEEEec
Q psy4613          71 TKYDLGSYKCIAKN   84 (96)
Q Consensus        71 ~~~d~g~y~c~~~~   84 (96)
                      +.+|.+.|+|....
T Consensus        88 ~~eDtA~YYCAr~~  101 (122)
T d1vgeh1          88 RPEDTAVYYCARDP  101 (122)
T ss_dssp             CGGGCEEEEEEEET
T ss_pred             CCCcceEEEEeecC
Confidence            99999999998654

>d1r0ah1 b.1.1.1 (H:1-123) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=97.94  E-value=9.7e-05  Score=33.90  Aligned_cols=69  Identities=14%  Similarity=0.225  Sum_probs=43.0

Q ss_pred             eecCCCcEEEEEEeeeccc----ceeEEeecc--c--eeE---ec----------ccceEEEEeccccceEEEEEEEccC
Q psy4613          12 GAPIDTDVTLECYVEAYPK----SINYWVRDQ--G--DMV---IS----------SERYEVESISRSIFDFKMRLTIKKI   70 (96)
Q Consensus        12 ~~~~g~~~~l~c~~~~~~~----~~~~w~~~~--~--~~~---~~----------~~~~~~~~~~~~~~~~~~~l~i~~~   70 (96)
                      .+++|+++.|.|.+.+...    -.+.|++..  .  +.+   ..          ..++.+......   ....|.|.++
T Consensus        11 ~vkpg~sv~LsC~~SG~s~s~~~y~~~W~RQ~pGkgle~i~~i~~~~~~~y~~~~k~Rftis~D~s~---~~~~L~i~sl   87 (123)
T d1r0ah1          11 IVQPSQPFRLTCTFSGFSLSTSGIGVTWIRQPSGKGLEWLATIWWDDDNRYNPSLKSRLTVSKDTSN---NQAFLNMMTV   87 (123)
T ss_dssp             EECTTCCEEEEEEEESSCTTSTTEEEEEEEEETTSCCEEEEEEETTSCCEECTTTGGGEEEEEEGGG---TEEEEEECSC
T ss_pred             eECCCCCeEEEEEEcCCccCCCCCeeeccccCCCcceEeeeeecCCccccccceeeEEEEccccccc---eeEEcceeec
Confidence            4678999999999887432    246788631  1  111   11          123333321111   2356999999


Q ss_pred             CCCCCeeEEEEEe
Q psy4613          71 TKYDLGSYKCIAK   83 (96)
Q Consensus        71 ~~~d~g~y~c~~~   83 (96)
                      +.+|.+.|.|...
T Consensus        88 ~~eDsAvYyCAr~  100 (123)
T d1r0ah1          88 ETADTAIYYCAQS  100 (123)
T ss_dssp             CGGGCEEEEEEEE
T ss_pred             ccccceEEeeccc
Confidence            9999999999854

>d1ncwh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Probab=97.92  E-value=0.0001  Score=33.59  Aligned_cols=70  Identities=17%  Similarity=0.318  Sum_probs=44.8

Q ss_pred             eecCCCcEEEEEEeeecccc---eeEEeecc--cee--E---ec----------ccceEEEEeccccceEEEEEEEccCC
Q psy4613          12 GAPIDTDVTLECYVEAYPKS---INYWVRDQ--GDM--V---IS----------SERYEVESISRSIFDFKMRLTIKKIT   71 (96)
Q Consensus        12 ~~~~g~~~~l~c~~~~~~~~---~~~w~~~~--~~~--~---~~----------~~~~~~~~~~~~~~~~~~~l~i~~~~   71 (96)
                      .+++|+++.|.|.+.|....   .+.|++..  ..+  +   ..          ..|+.+......   ....|.|.+++
T Consensus        11 ~vkPg~sl~LsC~~SG~s~~s~y~~~WvRQ~PGkglEwig~i~~~~~t~y~~s~kgR~TiS~D~s~---nt~~L~~~sL~   87 (119)
T d1ncwh1          11 LVKPSQSLSLTCTVTGYSITSDFAWNWIRQFPGNKLEWMGYINYSGFTSHNPSLKSRISITRDTSK---NQFFLQLNSVT   87 (119)
T ss_dssp             EECTTSCEEEEEEEESSCTTSSEEEEEEEEETTTEEEEEEEEETTSCEEECGGGTTTEEEEEETTT---TEEEEEECSCC
T ss_pred             EECCCCCEEEEEEEccccccCCCccccceECCCcceeeeeeccccccchhchhccccceEeccccc---ceeeccccccc
Confidence            46789999999999986542   46787632  111  1   00          123343332211   23568999999


Q ss_pred             CCCCeeEEEEEec
Q psy4613          72 KYDLGSYKCIAKN   84 (96)
Q Consensus        72 ~~d~g~y~c~~~~   84 (96)
                      .+|.+.|+|....
T Consensus        88 ~eDTAvYYCAr~~  100 (119)
T d1ncwh1          88 TEDTATYYCAGLL  100 (119)
T ss_dssp             GGGCEEEEEEEEE
T ss_pred             cCCceEEEEeEec
Confidence            9999999997554

>d1cqka_ b.1.1.2 (A:) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.92  E-value=3.1e-05  Score=34.31  Aligned_cols=70  Identities=11%  Similarity=0.184  Sum_probs=39.7

Q ss_pred             CCCcEEEEEEeeec-ccc-eeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecC
Q psy4613          15 IDTDVTLECYVEAY-PKS-INYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNS   85 (96)
Q Consensus        15 ~g~~~~l~c~~~~~-~~~-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~   85 (96)
                      ..+.+.|.|.+.+. |.. .+.|.+++..... ..........+..+...+.|.+..-.-.....|.|.+...
T Consensus        17 ~~~~~tL~C~v~~f~P~~i~v~W~~~g~~~~~-~~~~~~~~~~dgtys~~S~L~v~~~~w~~~~~ytC~V~H~   88 (101)
T d1cqka_          17 AKDLVSLTCMITDFFPEDITVEWQWNGQPAEN-YKNTQPIMDTDGSYFVYSKLNVQKSNWEAGNTFTCSVLHE   88 (101)
T ss_dssp             TSSEEEEEEEEEEEBSSCCEEEEEETTEECCS-EEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECT
T ss_pred             CCCcEEEEEEEEEeECCCcEEEEEECCEEccC-cEEeeeecCCCCcEEEEEEEEECHHHhCCCCEEEEEEEEC
Confidence            45678999999985 433 7889987654321 1111111222234445566666543322334799999875

>d1etzb1 b.1.1.1 (B:1-126) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=97.91  E-value=0.00012  Score=33.81  Aligned_cols=69  Identities=17%  Similarity=0.309  Sum_probs=42.8

Q ss_pred             eecCCCcEEEEEEeeeccc----ceeEEeecc--cee--E---ec----------ccceEEEEeccccceEEEEEEEccC
Q psy4613          12 GAPIDTDVTLECYVEAYPK----SINYWVRDQ--GDM--V---IS----------SERYEVESISRSIFDFKMRLTIKKI   70 (96)
Q Consensus        12 ~~~~g~~~~l~c~~~~~~~----~~~~w~~~~--~~~--~---~~----------~~~~~~~~~~~~~~~~~~~l~i~~~   70 (96)
                      .+++|+++.|.|.+.|...    ..+.|++..  ..+  +   ..          ..++.+......   ....|.|.++
T Consensus        11 lvkPg~sv~LsC~~SG~s~s~~~~~~~W~RQ~pg~~le~l~~i~~~~~~~~~~s~~~Rftis~d~s~---~t~~L~i~~l   87 (126)
T d1etzb1          11 ILQPSQTLSLTCSFSGFSLSTSGMGVGWIRQPSGEGLEWLADIWWNDKKYYNPSLKSRLTVSKDTSS---NQVFLKITSV   87 (126)
T ss_dssp             EECTTCCEEEEEEEESSCTTSTTEEEEEEEEETTTCCEEEEEEETTCCEEECTTTTTTEEEEEETTT---TEEEEEECSC
T ss_pred             eECCCCCEEEEEEEeCCccCCCCCCCeEEeCCCCccceEeeecCCCCCceeceeeeEeeEEecccCC---cEEEcceecc
Confidence            4678999999999886432    246787631  111  1   01          113333321111   2356999999


Q ss_pred             CCCCCeeEEEEEe
Q psy4613          71 TKYDLGSYKCIAK   83 (96)
Q Consensus        71 ~~~d~g~y~c~~~   83 (96)
                      +.+|.+.|.|...
T Consensus        88 ~~eDtAvYyCAr~  100 (126)
T d1etzb1          88 DTSDTATYHCARR  100 (126)
T ss_dssp             CGGGCEEEEEEEE
T ss_pred             cccccceEEEEEe
Confidence            9999999999753

>d1mjul2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.91  E-value=4.2e-05  Score=34.25  Aligned_cols=70  Identities=16%  Similarity=0.247  Sum_probs=39.2

Q ss_pred             CCCcEEEEEEeeecccc--eeEEeeccceeEecccceEEEE---eccccceEEEEEEEccCCCCCCeeEEEEEecCC
Q psy4613          15 IDTDVTLECYVEAYPKS--INYWVRDQGDMVISSERYEVES---ISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSL   86 (96)
Q Consensus        15 ~g~~~~l~c~~~~~~~~--~~~w~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~   86 (96)
                      .+..+.|.|.+.+..+.  .+.|.+++.... . .......   ..+..|...+.|.+..-.-.....|.|.+....
T Consensus        19 ~~~~~tL~Cl~~~f~P~~i~v~W~~ng~~~~-~-~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~g~~ytC~V~H~~   93 (107)
T d1mjul2          19 TSGGASVVCFLNNFYPKDINVKWKIDGSERQ-N-GVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKT   93 (107)
T ss_dssp             TTTEEEEEEEEEEEBSSCCEEEEEETTEEEC-T-TEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTT
T ss_pred             cCCceEEEEEEEEeECCCCEEEEEECCEEcc-C-CeEeccccEecCCCCEEEEEEEEECHHHhCCCCEEEEEEEECC
Confidence            46778999999885433  788988765432 1 1111110   111233345666665433222347999998643

>d1rihh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.91  E-value=0.00012  Score=33.74  Aligned_cols=71  Identities=11%  Similarity=0.229  Sum_probs=45.2

Q ss_pred             eeecCCCcEEEEEEeeeccc--ceeEEeecc--cee--E---ec-----------ccceEEEEeccccceEEEEEEEccC
Q psy4613          11 VGAPIDTDVTLECYVEAYPK--SINYWVRDQ--GDM--V---IS-----------SERYEVESISRSIFDFKMRLTIKKI   70 (96)
Q Consensus        11 ~~~~~g~~~~l~c~~~~~~~--~~~~w~~~~--~~~--~---~~-----------~~~~~~~~~~~~~~~~~~~l~i~~~   70 (96)
                      ..+++|+++.|.|.+.|...  -.+.|++..  ..+  +   ..           ..+..+.....   .....|.|.++
T Consensus        10 ~l~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~pGkglewlg~i~~~~~~~~ya~s~~~R~tis~D~s---~n~vyL~l~sL   86 (125)
T d1rihh1          10 ELAKPGASMKMSCRASGYSFTSYWIHWLKQRPDQGLEWIGYIDPATAYTESNQKFKDKAILTADRS---SNTAFMYLNSL   86 (125)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETT---TTEEEEEECSC
T ss_pred             ceECCCCCEEEEEEEccCCCCCCCCccccCCCCccceeeeecCCccccccccccceeeeEEecccC---cceEeeeeecc
Confidence            34788999999999987553  367787642  111  1   10           12333333211   12356889999


Q ss_pred             CCCCCeeEEEEEec
Q psy4613          71 TKYDLGSYKCIAKN   84 (96)
Q Consensus        71 ~~~d~g~y~c~~~~   84 (96)
                      +.+|.+.|+|....
T Consensus        87 ~~eDtAvYYCAR~~  100 (125)
T d1rihh1          87 TSEDSAVYYCARES  100 (125)
T ss_dssp             CGGGCEEEEEEEEC
T ss_pred             CcccceEEEEeeeC
Confidence            99999999998653

>d1oari_ b.1.1.1 (I:) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.89  E-value=0.00011  Score=32.69  Aligned_cols=70  Identities=16%  Similarity=0.250  Sum_probs=39.5

Q ss_pred             CCCcEEEEEEeeecccc--eeEEeeccc--ee--E---e-----------cccceEEEEeccccceEEEEEEEccCCCCC
Q psy4613          15 IDTDVTLECYVEAYPKS--INYWVRDQG--DM--V---I-----------SSERYEVESISRSIFDFKMRLTIKKITKYD   74 (96)
Q Consensus        15 ~g~~~~l~c~~~~~~~~--~~~w~~~~~--~~--~---~-----------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d   74 (96)
                      +|+++.|.|.+.+....  .+.|++...  .+  .   .           ...|+.+....   ......|.|.+++.+|
T Consensus         1 PG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwl~~i~~~~~~~~y~~~~~~R~tiS~D~---s~~t~~L~~~sL~~eD   77 (103)
T d1oari_           1 PGASVKLSCKASGYTFTSYWMHWVKQRPGRGLEWIGRIDPNGGGTKYNEKFKSKATLTVDK---PSSTAYMQLSSLTSED   77 (103)
T ss_dssp             CCCCEEEEEECCSSCSTTSEEEEEEEC----CEEEEEEC----CEEECTTTTTTEEEEC-------CEEEEEECCC---C
T ss_pred             CCCCeEEEEEEECCChhcCceeeEEeCCCCceEeeeeccccccccccccceeeceEEeccc---cccEEEeeeeeccccc
Confidence            47899999999875433  678886421  11  1   0           01233332211   1123569999999999


Q ss_pred             CeeEEEEEecCCC
Q psy4613          75 LGSYKCIAKNSLG   87 (96)
Q Consensus        75 ~g~y~c~~~~~~g   87 (96)
                      .+.|.|......+
T Consensus        78 TAvYYCAr~~~~~   90 (103)
T d1oari_          78 SAVYYCARMWYYG   90 (103)
T ss_dssp             CSEEEEEEEECSS
T ss_pred             cEEEEeEEECCCC
Confidence            9999998654433

>d1igtb4 b.1.1.2 (B:363-474) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus), gamma2 [TaxId: 10090]

Probab=97.87  E-value=3.8e-05  Score=34.06  Aligned_cols=72  Identities=19%  Similarity=0.259  Sum_probs=39.0

Q ss_pred             cCCCcEEEEEEeeec-cc-ceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCC
Q psy4613          14 PIDTDVTLECYVEAY-PK-SINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSL   86 (96)
Q Consensus        14 ~~g~~~~l~c~~~~~-~~-~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~   86 (96)
                      ..+..+.|.|.+.+. |. -.+.|.+++...... .........+..+...+.|.+..-.-.....|.|.+....
T Consensus        17 ~~~~~~tl~C~v~gf~P~~i~v~W~~~g~~~~~~-~~~~~~~~~dgtys~~S~L~v~~~~W~~~~~ytC~V~H~~   90 (102)
T d1igtb4          17 MTKKQVTLTCMVTDFMPEDIYVEWTNNGKTELNY-KNTEPVLDSDGSYFMYSKLRVEKKNWVERNSYSCSVVHEG   90 (102)
T ss_dssp             TTSSEEEEEEEEEEEBSSCCEEEEEETTEECSSE-EECCCEECTTSCEEEEEEEEEEHHHHHTCCCEEEEEECTT
T ss_pred             hcCCcEEEEEEEEEeECCCcEEEEEECCEEccCc-EEccceeCCCCcEEEEEEEEECHHHcCCCCEEEEEEEeCC
Confidence            357789999999984 33 378898876432110 0000111122233345666665432122347999998643

>d1dfbh1 b.1.1.1 (H:1-126) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=97.87  E-value=0.00014  Score=33.42  Aligned_cols=69  Identities=16%  Similarity=0.349  Sum_probs=44.4

Q ss_pred             eecCCCcEEEEEEeeecccc--eeEEeecc--cee--E---e-c----------ccceEEEEeccccceEEEEEEEccCC
Q psy4613          12 GAPIDTDVTLECYVEAYPKS--INYWVRDQ--GDM--V---I-S----------SERYEVESISRSIFDFKMRLTIKKIT   71 (96)
Q Consensus        12 ~~~~g~~~~l~c~~~~~~~~--~~~w~~~~--~~~--~---~-~----------~~~~~~~~~~~~~~~~~~~l~i~~~~   71 (96)
                      .+++|+++.|.|.+.+....  .+.|++..  ..+  .   . .          ..|+.+......   ....|.|.+++
T Consensus        11 ~vkPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgR~tiS~D~s~---nt~~L~~~~L~   87 (126)
T d1dfbh1          11 LVQPGRSLRLSCAASGFTFNDYAMHWVRQAPGKGLEWVSGISWDSSSIGYADSVKGRFTISRDNAK---NSLYLQMNSLR   87 (126)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSSEEECGGGTTTEEEEEETTT---TEEEEEECSCC
T ss_pred             eECCCCCeEEEEEECCccccCCcceeceeCCCccceeeeecCcccccchhccccccceEEeccCCC---cEEEeeeeeec
Confidence            46889999999999875533  67787642  111  1   0 0          123333332111   23568999999


Q ss_pred             CCCCeeEEEEEe
Q psy4613          72 KYDLGSYKCIAK   83 (96)
Q Consensus        72 ~~d~g~y~c~~~   83 (96)
                      .+|.+.|.|...
T Consensus        88 ~eDtavYYCAr~   99 (126)
T d1dfbh1          88 AEDMALYYCVKG   99 (126)
T ss_dssp             GGGCEEEEEEEE
T ss_pred             cCcceEEEEEec
Confidence            999999999754

>d1rjca1 b.1.1.1 (A:2-127) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=97.87  E-value=0.00014  Score=33.44  Aligned_cols=70  Identities=16%  Similarity=0.273  Sum_probs=43.7

Q ss_pred             eecCCCcEEEEEEeeecccc--eeEEeecc--cee-----Eec-----------ccceEEEEeccccceEEEEEEEccCC
Q psy4613          12 GAPIDTDVTLECYVEAYPKS--INYWVRDQ--GDM-----VIS-----------SERYEVESISRSIFDFKMRLTIKKIT   71 (96)
Q Consensus        12 ~~~~g~~~~l~c~~~~~~~~--~~~w~~~~--~~~-----~~~-----------~~~~~~~~~~~~~~~~~~~l~i~~~~   71 (96)
                      .+++|+++.|.|.+.+....  .+.|++..  ..+     +..           ..++.+....   ......|.|.+++
T Consensus        10 lvkPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~~~kgR~tis~D~---s~~~~~L~i~~l~   86 (126)
T d1rjca1          10 SVQAGQSLRLSCATSGATSSSNCMGWFRQAPGKEREGVAVIDTGRGNTAYADSVQGRLTISLDN---AKNTLYLQMNSLK   86 (126)
T ss_dssp             EECTTCCEEEEEECC-CTTTCSEEEEEEECTTSCCEEEEEEETTTCCEEECTTTTTTEEEEEEC-----CEEEEEECSCC
T ss_pred             eECCCCCeEEEEEECCCCCcCCceEeeeeCCCcceEeeeccccccccccccccceeeEEEEecC---CceEEEEEEeccC
Confidence            46789999999999875433  67787642  111     111           1233333211   1123559999999


Q ss_pred             CCCCeeEEEEEec
Q psy4613          72 KYDLGSYKCIAKN   84 (96)
Q Consensus        72 ~~d~g~y~c~~~~   84 (96)
                      .+|.+.|.|....
T Consensus        87 ~eDTAvYYCAr~~   99 (126)
T d1rjca1          87 PEDTAMYYCAADT   99 (126)
T ss_dssp             GGGCEEEEEEECC
T ss_pred             cccCceeEEEeec
Confidence            9999999998654

>d1i1ca2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.86  E-value=3e-05  Score=34.43  Aligned_cols=70  Identities=13%  Similarity=0.208  Sum_probs=39.0

Q ss_pred             CCCcEEEEEEeeecccc--eeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecC
Q psy4613          15 IDTDVTLECYVEAYPKS--INYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNS   85 (96)
Q Consensus        15 ~g~~~~l~c~~~~~~~~--~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~   85 (96)
                      ..+.+.|.|.+.+..+.  .+.|.+++...... .........+..+...+.|.+..-.-.....|.|.+...
T Consensus        18 ~~~~~~L~C~v~~f~P~~i~v~W~~~g~~~~~~-~~~~~~~~~dgt~s~~S~L~v~~~~w~~~~~ytC~V~H~   89 (102)
T d1i1ca2          18 TQSQVSITCMVKGFYPPDIYTEWKMNGQPQENY-KNTPPTMDTDGSYFLYSKLNVKKETWQQGNTFTCSVLHE   89 (102)
T ss_dssp             GSSEEEEEEEEEEEBSSCCEEEEEETTEECSSE-EECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECT
T ss_pred             cCCeEEEEEEEEEEECCCCEEEEEECCeeccCc-EEcccEeCCCCCEEEEEEEEECHHHhCCCCEEEEEEEeC
Confidence            35678999999886443  68899886543210 000111122223334455666553323344799999874

>d1ad9b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.86  E-value=0.00014  Score=33.13  Aligned_cols=70  Identities=13%  Similarity=0.245  Sum_probs=45.4

Q ss_pred             eecCCCcEEEEEEeeecccc--eeEEeecc--cee-----Ee-----------cccceEEEEeccccceEEEEEEEccCC
Q psy4613          12 GAPIDTDVTLECYVEAYPKS--INYWVRDQ--GDM-----VI-----------SSERYEVESISRSIFDFKMRLTIKKIT   71 (96)
Q Consensus        12 ~~~~g~~~~l~c~~~~~~~~--~~~w~~~~--~~~-----~~-----------~~~~~~~~~~~~~~~~~~~~l~i~~~~   71 (96)
                      .+++|+++.|.|.+.+....  .+.|++..  ..+     +.           -..|+.+......   ....|.|.+++
T Consensus        11 ~vkpg~sl~LsC~vSG~s~~~~~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgRftiS~D~s~---nt~~L~m~~L~   87 (120)
T d1ad9b1          11 VKKPGSSVKVSCKASGYTFTDYYINWMRQAPGQGLEWIGWIDPGSGNTKYNEKFKGRATLTVDTST---NTAYMELSSLR   87 (120)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEEETTTTEEEECGGGBTTEEEEEETTT---TEEEEEECSCC
T ss_pred             eECCCCCEEEEEEEcCCCCcCCccccceECCCccceeeeecCCcccceeeccceeeeEEEEecCcc---eEEeccccccC
Confidence            47889999999999875543  67787642  111     00           0133444332211   23568999999


Q ss_pred             CCCCeeEEEEEec
Q psy4613          72 KYDLGSYKCIAKN   84 (96)
Q Consensus        72 ~~d~g~y~c~~~~   84 (96)
                      .+|.+.|+|....
T Consensus        88 ~eDTAvYYCAr~~  100 (120)
T d1ad9b1          88 SEDTAFYFCAREK  100 (120)
T ss_dssp             GGGCEEEEEEEEB
T ss_pred             CCcceEEEEEEcC
Confidence            9999999998654

>d1l6xa2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.85  E-value=4.9e-05  Score=33.69  Aligned_cols=71  Identities=15%  Similarity=0.164  Sum_probs=39.8

Q ss_pred             CCCcEEEEEEeeeccc-c-eeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCC
Q psy4613          15 IDTDVTLECYVEAYPK-S-INYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSL   86 (96)
Q Consensus        15 ~g~~~~l~c~~~~~~~-~-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~   86 (96)
                      .+..+.|.|.+.+..+ . .+.|.+++...... .........+..+...+.|.+..-.-.....|.|.+....
T Consensus        18 ~~~~~tL~Clv~gf~P~~i~v~W~~~g~~~~~~-~~~~~~~~~dgtys~~S~L~v~~~~w~~g~~ytC~V~H~~   90 (102)
T d1l6xa2          18 TKNQVSLTCLVKGFYPSDIAVEWESNGQPENNY-KTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEA   90 (102)
T ss_dssp             GSSEEEEEEEEEEEBSSCCEEEEEETTEEECCE-EECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTT
T ss_pred             cCCceEEEEEEEEeECCCCEEEEEECCEECCCe-EEcceEECCCCCEEEEEEEEECHHHcCCCCEEEEEEEeCC
Confidence            4677899999998543 3 78899886543210 0011111222333345666665433223347999998753

>d1jnhb1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.85  E-value=0.00014  Score=32.99  Aligned_cols=70  Identities=20%  Similarity=0.325  Sum_probs=45.2

Q ss_pred             eecCCCcEEEEEEeeecccc--eeEEeecc--cee-----Eec-----------ccceEEEEeccccceEEEEEEEccCC
Q psy4613          12 GAPIDTDVTLECYVEAYPKS--INYWVRDQ--GDM-----VIS-----------SERYEVESISRSIFDFKMRLTIKKIT   71 (96)
Q Consensus        12 ~~~~g~~~~l~c~~~~~~~~--~~~w~~~~--~~~-----~~~-----------~~~~~~~~~~~~~~~~~~~l~i~~~~   71 (96)
                      .+++|+++.|.|.+.+....  .+.|++..  ..+     +..           ..|+.+......   ....|.|.+++
T Consensus        11 ~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglewvg~i~~~~~~t~ya~s~kgRfTiS~D~s~---~t~yLq~~~L~   87 (117)
T d1jnhb1          11 LARPGASVKLSCRTSGYSFTTYWMQWVRQRPGQGLEWIAAIYPGDDDARYTQKFKGKATLTADRSS---SIVYLQLNSLT   87 (117)
T ss_dssp             ECCTTCCEEEEEEEESSCSSSSEEEEEEECTTSCEEEEEEEEGGGTEEEECTTTTTTEEEEEETTT---TEEEEEECSCC
T ss_pred             eECCCCCEEEEEEEcCCCCCCCceeeeeeCCCCcceeeeccCccccccccccceeEEEEEeccCcc---ceeeecccccC
Confidence            46789999999999986543  57787632  111     110           124444432211   23568999999


Q ss_pred             CCCCeeEEEEEec
Q psy4613          72 KYDLGSYKCIAKN   84 (96)
Q Consensus        72 ~~d~g~y~c~~~~   84 (96)
                      .+|.+.|+|....
T Consensus        88 ~eDTAvYYCAr~~  100 (117)
T d1jnhb1          88 SEDSAVYSCSRGR  100 (117)
T ss_dssp             GGGCEEEEEEEEE
T ss_pred             CCcceEEEEeecC
Confidence            9999999997644

>d1ct8b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]

Probab=97.85  E-value=0.00015  Score=33.01  Aligned_cols=71  Identities=15%  Similarity=0.315  Sum_probs=45.5

Q ss_pred             eeecCCCcEEEEEEeeecc--cceeEEeecc--cee-----Eec-----------ccceEEEEeccccceEEEEEEEccC
Q psy4613          11 VGAPIDTDVTLECYVEAYP--KSINYWVRDQ--GDM-----VIS-----------SERYEVESISRSIFDFKMRLTIKKI   70 (96)
Q Consensus        11 ~~~~~g~~~~l~c~~~~~~--~~~~~w~~~~--~~~-----~~~-----------~~~~~~~~~~~~~~~~~~~l~i~~~   70 (96)
                      ..+++|+++.|.|.+.|..  ...+.|++..  ..+     +..           ..+..+......   ....|.|.++
T Consensus        10 ~~~kPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkgLEwlg~i~~~~~~~~y~~~~~gR~tis~D~s~---~t~yL~i~~L   86 (118)
T d1ct8b1          10 VLVKPGASVKLSCKTSGFTFSSSYINWLKQKPGQSLEWIAWIYAGSGGTVYNQHFTDKARLTVDTSS---STAYMQFSSL   86 (118)
T ss_dssp             EEECTTCCEEEEEEEESSCSTTCEEEEEEECTTSCEEEEEEEETTTCCEEECTTSTTTEEEEEEGGG---TEEEEEECSC
T ss_pred             ceECCCCCEEEEEEEccccCCCCCCcccEECCCCceEeeeeccccccchhhhhheeeeEEEEecCcc---ceEEeccccc
Confidence            4578899999999998754  3367787632  111     111           123344332211   2357899999


Q ss_pred             CCCCCeeEEEEEec
Q psy4613          71 TKYDLGSYKCIAKN   84 (96)
Q Consensus        71 ~~~d~g~y~c~~~~   84 (96)
                      +.+|.+.|+|....
T Consensus        87 ~~eDtAvYYCAr~~  100 (118)
T d1ct8b1          87 TTEDSAIYYCARYR  100 (118)
T ss_dssp             CGGGCEEEEEEEEC
T ss_pred             CCCcceEEEEeeec
Confidence            99999999998654

>d1fn4b1 b.1.1.1 (B:1-106) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.84  E-value=7.9e-05  Score=33.85  Aligned_cols=71  Identities=17%  Similarity=0.297  Sum_probs=44.2

Q ss_pred             eecCCCcEEEEEEeeeccc--ceeEEeecc--c--eeE---ec----------ccceEEEEeccccceEEEEEEEccCCC
Q psy4613          12 GAPIDTDVTLECYVEAYPK--SINYWVRDQ--G--DMV---IS----------SERYEVESISRSIFDFKMRLTIKKITK   72 (96)
Q Consensus        12 ~~~~g~~~~l~c~~~~~~~--~~~~w~~~~--~--~~~---~~----------~~~~~~~~~~~~~~~~~~~l~i~~~~~   72 (96)
                      .+++|+++.|.|.+.+...  -.+.|++..  .  +..   ..          ..|+.+.....   .....|.|.+++.
T Consensus        11 ~vkPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwv~~i~~~g~t~y~~~~kgR~tis~D~s---~~tv~L~~~~L~~   87 (116)
T d1fn4b1          11 LVRPSETLSLTCTVSGFSLTSFSVSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSISRDTS---KNQVFLKMNSLQT   87 (116)
T ss_dssp             BCCTTSEECCEEECCSSCTTSSEEEEEEEETTSCCEEEEEECSSSCEEECHHHHTTBCCEEEGG---GTEEECCEESCCC
T ss_pred             eECCCCCeEEEEEEeCcccccCccceeeECCCCceeeeeeccccccccccccccceEEEccccc---cchhhcceeccCC
Confidence            3678999999999987543  367787632  1  111   01          12222222111   1235688899999


Q ss_pred             CCCeeEEEEEecC
Q psy4613          73 YDLGSYKCIAKNS   85 (96)
Q Consensus        73 ~d~g~y~c~~~~~   85 (96)
                      +|.+.|.|.....
T Consensus        88 eDTAvYyCAr~~~  100 (116)
T d1fn4b1          88 DDTGTYYCTRDLY  100 (116)
T ss_dssp             CCCEEEEEEEECS
T ss_pred             CCCEEEEEEeecC
Confidence            9999999976543

>d2nxyd1 b.1.1.1 (D:3001-3128) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.83  E-value=0.00017  Score=33.23  Aligned_cols=70  Identities=16%  Similarity=0.241  Sum_probs=45.1

Q ss_pred             eecCCCcEEEEEEeeecccc--eeEEeeccc----eeE---e-----------cccceEEEEeccccceEEEEEEEccCC
Q psy4613          12 GAPIDTDVTLECYVEAYPKS--INYWVRDQG----DMV---I-----------SSERYEVESISRSIFDFKMRLTIKKIT   71 (96)
Q Consensus        12 ~~~~g~~~~l~c~~~~~~~~--~~~w~~~~~----~~~---~-----------~~~~~~~~~~~~~~~~~~~~l~i~~~~   71 (96)
                      .+++|+++.|.|.+.+....  .+.|++...    ..+   .           -..|+.+......   ....|.|.+++
T Consensus        11 ~~kpg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewig~i~~~~~~~~ya~s~kgR~tiS~D~s~---~t~yL~~~sL~   87 (128)
T d2nxyd1          11 VKKPGSSVKVSCKASGDTFIRYSFTWVRQAPGQGLEWMGRIITILDVAHYAPHLQGRVTITADKST---STVYLELRNLR   87 (128)
T ss_dssp             EECTTCCEEEEEEEESSCGGGEEEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTT---TEEEEEECSCC
T ss_pred             eECCCCCEEEEEEEcCCCccCCCcccceeCCCcceeeeeecCCcccccccccceeEEEEEeecCCC---ceEEeeeeecc
Confidence            47889999999999986544  567876321    111   0           0124444432211   23568999999


Q ss_pred             CCCCeeEEEEEec
Q psy4613          72 KYDLGSYKCIAKN   84 (96)
Q Consensus        72 ~~d~g~y~c~~~~   84 (96)
                      .+|.+.|+|....
T Consensus        88 ~eDTA~YYCAr~~  100 (128)
T d2nxyd1          88 SDDTAVYFCAGVY  100 (128)
T ss_dssp             GGGCEEEEEEEEE
T ss_pred             ccCceEEEEeEEe
Confidence            9999999998643

>d1n0xh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.83  E-value=0.00017  Score=33.18  Aligned_cols=69  Identities=16%  Similarity=0.310  Sum_probs=44.6

Q ss_pred             eeecCCCcEEEEEEeeecccc--eeEEeeccc--ee-----Eec-----------ccceEEEEeccccceEEEEEEEccC
Q psy4613          11 VGAPIDTDVTLECYVEAYPKS--INYWVRDQG--DM-----VIS-----------SERYEVESISRSIFDFKMRLTIKKI   70 (96)
Q Consensus        11 ~~~~~g~~~~l~c~~~~~~~~--~~~w~~~~~--~~-----~~~-----------~~~~~~~~~~~~~~~~~~~l~i~~~   70 (96)
                      ..+++|+++.|.|.+.+....  .+.|++...  .+     +..           ..++.+......   ....|.|.++
T Consensus        10 ~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglew~g~i~~~~~~~~ya~s~kgR~tiS~D~s~---nt~yL~~~~L   86 (127)
T d1n0xh1          10 EVKKPGASVKVSCQASGYRFSNFVIHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSA---NTAYMELRSL   86 (127)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECTTTCCEEECTTTTTTEEEEEEGGG---TEEEEEECSC
T ss_pred             ceECCCCCEEEEEEEcCCCCCCCCEEEEEeCCCCcceeeeecCccccccccchhccccceEecccCc---eEEEEEEEcc
Confidence            457889999999999985533  577876421  11     110           123444432211   2356889999


Q ss_pred             CCCCCeeEEEEE
Q psy4613          71 TKYDLGSYKCIA   82 (96)
Q Consensus        71 ~~~d~g~y~c~~   82 (96)
                      +.+|.+.|+|.-
T Consensus        87 ~~eDtAvYYCAR   98 (127)
T d1n0xh1          87 RSADTAVYYCAR   98 (127)
T ss_dssp             CGGGCEEEEEEE
T ss_pred             CCCCceEEEEEe
Confidence            999999999974

>d2fbjh1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=97.82  E-value=0.00017  Score=32.82  Aligned_cols=71  Identities=15%  Similarity=0.289  Sum_probs=46.0

Q ss_pred             eecCCCcEEEEEEeeecccc--eeEEeecc--cee--E---ec-----------ccceEEEEeccccceEEEEEEEccCC
Q psy4613          12 GAPIDTDVTLECYVEAYPKS--INYWVRDQ--GDM--V---IS-----------SERYEVESISRSIFDFKMRLTIKKIT   71 (96)
Q Consensus        12 ~~~~g~~~~l~c~~~~~~~~--~~~w~~~~--~~~--~---~~-----------~~~~~~~~~~~~~~~~~~~l~i~~~~   71 (96)
                      .+++|+++.|.|.+.+....  .+.|++..  ..+  .   ..           ..|+.+....   ......|.|.+++
T Consensus        11 ~vkpg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglEwv~~i~~~~~~~~Y~~s~kgRftiSrD~---s~nt~~L~~~sL~   87 (118)
T d2fbjh1          11 LVQPGGSLKLSCAASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDN---AKNSLYLQMSKVR   87 (118)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECS---SSCEEEEEECSCC
T ss_pred             eECCCCCEEEEEEECCccccCCceeeeeecCCcceeeeeecCcccccccccccceeeEEEeecC---ccceeeccccccC
Confidence            47889999999999886544  57787642  111  1   00           1233333321   1123568999999


Q ss_pred             CCCCeeEEEEEecC
Q psy4613          72 KYDLGSYKCIAKNS   85 (96)
Q Consensus        72 ~~d~g~y~c~~~~~   85 (96)
                      .+|.+.|+|.....
T Consensus        88 ~eDtAvYYCAr~~~  101 (118)
T d2fbjh1          88 SEDTALYYCARLHY  101 (118)
T ss_dssp             GGGCEEEEEEEEET
T ss_pred             CCcceEEEeeEecC
Confidence            99999999987654

>d1fltx_ b.1.1.4 (X:) Second domain of the Flt-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Second domain of the Flt-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.82  E-value=7.3e-05  Score=32.81  Aligned_cols=68  Identities=13%  Similarity=0.214  Sum_probs=43.8

Q ss_pred             ceeeecCCCcEEEEEEeeecccceeE-EeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecC
Q psy4613           9 QLVGAPIDTDVTLECYVEAYPKSINY-WVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNS   85 (96)
Q Consensus         9 ~~~~~~~g~~~~l~c~~~~~~~~~~~-w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~   85 (96)
                      ..+.+..|+.+.+.|.... |...+. |...+.............        ....+.|.+....+.|.|.|.+...
T Consensus        13 ~~V~v~eg~~~vIPC~vT~-P~~~VtL~~~~~~~~~p~g~~v~~D--------pk~Gf~I~~~~~~~~g~y~C~a~~~   81 (95)
T d1fltx_          13 EIIHMTEGRELVIPCRVTS-PNITVTLKKFPLDTLIPDGKRIIWD--------SRKGFIISNATYKEIGLLTCEATVN   81 (95)
T ss_dssp             EEEEECTTSCEEECCCBSC-TTSCCEEEETTTEEECCCSSSEEEE--------TTTEEEESSCCGGGCEEEEEEEEET
T ss_pred             CEEEEeCCCCEEEEccCCC-CCceeEEEeccCCccCCCCCEEEEC--------CCCCEEEeCCCcccCeEEEEEEEEC
Confidence            3466889999999999886 444443 433433332222222211        1245889999999999999998765

>d1op3h1 b.1.1.1 (H:1-115) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.81  E-value=0.00019  Score=32.96  Aligned_cols=70  Identities=24%  Similarity=0.348  Sum_probs=44.8

Q ss_pred             eecCCCcEEEEEEeeeccc--ceeEEeecc--cee--E---e-c----------ccceEEEEeccccceEEEEEEEccCC
Q psy4613          12 GAPIDTDVTLECYVEAYPK--SINYWVRDQ--GDM--V---I-S----------SERYEVESISRSIFDFKMRLTIKKIT   71 (96)
Q Consensus        12 ~~~~g~~~~l~c~~~~~~~--~~~~w~~~~--~~~--~---~-~----------~~~~~~~~~~~~~~~~~~~l~i~~~~   71 (96)
                      .+++|+++.|.|.+.+...  ..+.|++..  ..+  .   . .          ..|+.+.....   .....|.|.+++
T Consensus        11 lvkpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwv~~i~~~~~~~~Y~~s~kgRftiSrD~s---~~t~~Lqm~sL~   87 (125)
T d1op3h1          11 LVKAGGSLILSCGVSNFRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDL---EDFVYLQMHKMR   87 (125)
T ss_dssp             EEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEETT---TTEEEEEECSCC
T ss_pred             eECCCCCeEEEEeECCccCcCcccCccccCCCcceeeeeecCccccccccccccccceEEeccCc---cceEeeeeeccC
Confidence            4678999999999987543  357787642  111  1   0 0          12344433211   123568999999


Q ss_pred             CCCCeeEEEEEec
Q psy4613          72 KYDLGSYKCIAKN   84 (96)
Q Consensus        72 ~~d~g~y~c~~~~   84 (96)
                      .+|.+.|+|....
T Consensus        88 ~eDTAvYYCAr~~  100 (125)
T d1op3h1          88 VEDTAIYYCARKG  100 (125)
T ss_dssp             GGGCEEEEEEEEC
T ss_pred             CccceeEeEeecc
Confidence            9999999998653

>d1zvya1 b.1.1.1 (A:2-125) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=97.80  E-value=0.00019  Score=32.94  Aligned_cols=70  Identities=16%  Similarity=0.290  Sum_probs=45.5

Q ss_pred             eecCCCcEEEEEEeeecccc--eeEEeecc----cee---Eec-----------ccceEEEEeccccceEEEEEEEccCC
Q psy4613          12 GAPIDTDVTLECYVEAYPKS--INYWVRDQ----GDM---VIS-----------SERYEVESISRSIFDFKMRLTIKKIT   71 (96)
Q Consensus        12 ~~~~g~~~~l~c~~~~~~~~--~~~w~~~~----~~~---~~~-----------~~~~~~~~~~~~~~~~~~~l~i~~~~   71 (96)
                      .+++|+++.|.|.+.+....  .+.|++..    .+.   +..           ..|+.+.....   .....|.|.+++
T Consensus        10 lvkpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewv~~i~~~~~~~~y~~s~kgR~tis~D~s---~~t~yLq~~sL~   86 (124)
T d1zvya1          10 SVQAGGSLRLSCAASGSTDSIEYMTWFRQAPGKAREGVAALYTHTGNTYYTDSVKGRFTISQDKA---KNMAYLRMDSVK   86 (124)
T ss_dssp             ECCTTCCEEEEEEEESCSTTCCEEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGG---GTEEEEEECSCC
T ss_pred             eECCCCCeEEEEEEcCcccccccccccccCCccceEEEeecccccccceeccccccccEEecccc---cceeeceecccc
Confidence            47789999999999875533  67888742    111   111           12334333221   123568999999


Q ss_pred             CCCCeeEEEEEec
Q psy4613          72 KYDLGSYKCIAKN   84 (96)
Q Consensus        72 ~~d~g~y~c~~~~   84 (96)
                      .+|.+.|+|....
T Consensus        87 ~eDtAvYYCAr~~   99 (124)
T d1zvya1          87 SEDTAIYTCGATR   99 (124)
T ss_dssp             GGGCEEEEEEECS
T ss_pred             CCcceEEEEeecc
Confidence            9999999998653

>d1rhhb1 b.1.1.1 (B:3-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.80  E-value=0.0002  Score=33.10  Aligned_cols=71  Identities=14%  Similarity=0.187  Sum_probs=45.4

Q ss_pred             eeecCCCcEEEEEEeeeccc--ceeEEeecc--cee--E---ec-----------ccceEEEEeccccceEEEEEEEccC
Q psy4613          11 VGAPIDTDVTLECYVEAYPK--SINYWVRDQ--GDM--V---IS-----------SERYEVESISRSIFDFKMRLTIKKI   70 (96)
Q Consensus        11 ~~~~~g~~~~l~c~~~~~~~--~~~~w~~~~--~~~--~---~~-----------~~~~~~~~~~~~~~~~~~~l~i~~~   70 (96)
                      ..+++|+++.|.|.+.+...  -.+.|++..  ..+  +   ..           ..|+.+......   ....|.|.++
T Consensus         9 ~~~kPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewig~i~~~~g~~~y~~~~kgR~tis~D~s~---~tv~L~~~~L   85 (130)
T d1rhhb1           9 EVKKPGSSVQVSCKASGGTFSMYGFNWVRQAPGHGLEWMGGIIPIFGTSNYAQKFRGRVTFTADQAT---STAYMELTNL   85 (130)
T ss_dssp             EEECTTCCEEEEEEETTSCCTTCEEEEEEECTTSCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTT---TEEEEEECSC
T ss_pred             ceECCCCCeEEEEEEeCCCccCCCcceEEeCCccCcEEEeecCCcccccccccceeeeeEEeccCCc---cEEEEEeecc
Confidence            34789999999999987543  357787642  111  1   10           124444332211   2356899999


Q ss_pred             CCCCCeeEEEEEec
Q psy4613          71 TKYDLGSYKCIAKN   84 (96)
Q Consensus        71 ~~~d~g~y~c~~~~   84 (96)
                      +.+|.+.|.|....
T Consensus        86 ~~eDtAvYyCAr~~   99 (130)
T d1rhhb1          86 RSDDTAVYYCARDF   99 (130)
T ss_dssp             CGGGCEEEEEEEEC
T ss_pred             CCCCcEEEEEEeec
Confidence            99999999998654

>d1mjuh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.80  E-value=0.00018  Score=32.55  Aligned_cols=71  Identities=15%  Similarity=0.287  Sum_probs=45.6

Q ss_pred             eeeecCCCcEEEEEEeeecccc--eeEEeecc--cee-----Eec-----------ccceEEEEeccccceEEEEEEEcc
Q psy4613          10 LVGAPIDTDVTLECYVEAYPKS--INYWVRDQ--GDM-----VIS-----------SERYEVESISRSIFDFKMRLTIKK   69 (96)
Q Consensus        10 ~~~~~~g~~~~l~c~~~~~~~~--~~~w~~~~--~~~-----~~~-----------~~~~~~~~~~~~~~~~~~~l~i~~   69 (96)
                      ...+++|+++.|.|.+.+....  .+.|++..  ..+     +..           ..++.+.....   .....|.|.+
T Consensus         9 ~~~~kPg~sl~LsC~~SG~s~~~~~~~WvRQ~PGkgLEw~g~i~~~~~~~~ya~s~kgR~tiS~D~s---~~tvyL~~~s   85 (116)
T d1mjuh1           9 AELVKPGASVKLSCKASGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTS---SSTAYMQLSS   85 (116)
T ss_dssp             EEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETT---TTEEEEEECS
T ss_pred             CcEECCCCCEEEEEEEccCccccCceEeeeeCCCcceeeeeecCccccccccccccceeeeEecccc---cceeEecccc
Confidence            3457889999999999975543  56787632  111     111           12344433221   1235688999


Q ss_pred             CCCCCCeeEEEEEe
Q psy4613          70 ITKYDLGSYKCIAK   83 (96)
Q Consensus        70 ~~~~d~g~y~c~~~   83 (96)
                      ++.+|.+.|+|...
T Consensus        86 L~~eDtAvYYCAr~   99 (116)
T d1mjuh1          86 LTSDDSAVYYCANK   99 (116)
T ss_dssp             CCGGGCEEEEEEEE
T ss_pred             cCCCCceEEEEccc
Confidence            99999999999754

>d2fx7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.78  E-value=0.00021  Score=32.89  Aligned_cols=70  Identities=19%  Similarity=0.277  Sum_probs=44.8

Q ss_pred             eecCCCcEEEEEEeeeccc--ceeEEeecc--cee-----Eec-----------ccceEEEEeccccceEEEEEEEccCC
Q psy4613          12 GAPIDTDVTLECYVEAYPK--SINYWVRDQ--GDM-----VIS-----------SERYEVESISRSIFDFKMRLTIKKIT   71 (96)
Q Consensus        12 ~~~~g~~~~l~c~~~~~~~--~~~~w~~~~--~~~-----~~~-----------~~~~~~~~~~~~~~~~~~~l~i~~~~   71 (96)
                      .+++|+++.|.|.+.+...  -.+.|++..  ..+     +..           ..|+.+......   ....|.|.+++
T Consensus        11 ~~kPg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglew~g~i~~~~~~~~y~~s~kgR~tiSrD~s~---~t~yL~~~sL~   87 (127)
T d2fx7h1          11 VKRPGSSVTVSCKASGGSFSTYALSWVRQAPGRGLEWMGGVIPLLTITNYAPRFQGRITITADRST---STAYLELNSLR   87 (127)
T ss_dssp             EECTTCCEEEEEEEESSCSTTSCEEEEEECTTCCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTT---TEEEEEECSCC
T ss_pred             eECCCCCEEEEEEEcCCCCCCCCeEEEEeCCCCcceeeeccCcccccccccceeeeeEEEeccCcc---ceEeeeecccC
Confidence            4688999999999987543  357787632  111     111           123333332211   23568999999


Q ss_pred             CCCCeeEEEEEec
Q psy4613          72 KYDLGSYKCIAKN   84 (96)
Q Consensus        72 ~~d~g~y~c~~~~   84 (96)
                      .+|.+.|.|....
T Consensus        88 ~eDTavYYCAR~~  100 (127)
T d2fx7h1          88 PEDTAVYYCAREG  100 (127)
T ss_dssp             GGGCEEEEEEEEE
T ss_pred             cccceEEEEeecc
Confidence            9999999998653

>d1rz7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.78  E-value=0.00021  Score=32.59  Aligned_cols=70  Identities=20%  Similarity=0.339  Sum_probs=45.5

Q ss_pred             eecCCCcEEEEEEeeecccc--eeEEeecc--cee-----Eec-----------ccceEEEEeccccceEEEEEEEccCC
Q psy4613          12 GAPIDTDVTLECYVEAYPKS--INYWVRDQ--GDM-----VIS-----------SERYEVESISRSIFDFKMRLTIKKIT   71 (96)
Q Consensus        12 ~~~~g~~~~l~c~~~~~~~~--~~~w~~~~--~~~-----~~~-----------~~~~~~~~~~~~~~~~~~~l~i~~~~   71 (96)
                      .+++|+++.|.|.+.+....  .+.|++..  ..+     +..           ..|+.+......   ....|.|.+++
T Consensus        11 ~~kpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewv~~i~~~~~~~~ya~s~kgRftiSrD~s~---nt~yLqm~sL~   87 (119)
T d1rz7h1          11 VKKPGATVKISCKASGYTFSDFYMYWVRQAPGKGLEWMGLIDPEDADTMYAEKFRGRVTITADTST---DTGYLELSSLR   87 (119)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTEEEEEETTT---TEEEEEECSCC
T ss_pred             eECCCCCEEEEEEEcCCCCcCCceEccccCCccceeeeeecCCcccccccccceeeeEEEecccCc---eEEEeeeeccC
Confidence            46889999999999986543  67887642  111     110           124444332211   23568999999


Q ss_pred             CCCCeeEEEEEec
Q psy4613          72 KYDLGSYKCIAKN   84 (96)
Q Consensus        72 ~~d~g~y~c~~~~   84 (96)
                      .+|.+.|+|....
T Consensus        88 ~eDTAvYYCAr~~  100 (119)
T d1rz7h1          88 SEDTAVYYCAADP  100 (119)
T ss_dssp             GGGCEEEEEEECT
T ss_pred             cccceEEEEeecC
Confidence            9999999998654

>d2mhaa1 b.1.1.2 (A:182-270) Class I MHC, alpha-3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.78  E-value=0.00016  Score=31.25  Aligned_cols=69  Identities=14%  Similarity=0.244  Sum_probs=39.4

Q ss_pred             cCCCcEEEEEEeeecccc--eeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecC
Q psy4613          14 PIDTDVTLECYVEAYPKS--INYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNS   85 (96)
Q Consensus        14 ~~g~~~~l~c~~~~~~~~--~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~   85 (96)
                      ..+..+.|.|.+.+..+.  .+.|.+++...................+...+.+.+..-   +...|.|.+...
T Consensus        13 ~~~~~~~L~C~a~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~---~~~~ytC~V~H~   83 (89)
T d2mhaa1          13 RPEDKVTLRCWALGFYPADITLTWQLNGEELIQDMELVETRPAGDGTFQKWASVVVPLG---KEQYYTCHVYHQ   83 (89)
T ss_dssp             SCSSEEEEEEEEESCBSSCCEEEEEETTEEECTTCEECCCEECSSSCEEEEEEEEEESS---TTTTCEEEEECS
T ss_pred             CCCCCEEEEEEEEeEECCCCEEEEEECCEEeCCCEEECcEecCCCCcEEEEEEEEecCc---CCCEEEEEEEEC
Confidence            346689999999996544  678998865443111111112222234434556666543   233799998764

>d1yedb1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.78  E-value=0.00021  Score=32.71  Aligned_cols=70  Identities=14%  Similarity=0.238  Sum_probs=44.9

Q ss_pred             eecCCCcEEEEEEeeecccc--eeEEeecc--cee-----Eec-----------ccceEEEEeccccceEEEEEEEccCC
Q psy4613          12 GAPIDTDVTLECYVEAYPKS--INYWVRDQ--GDM-----VIS-----------SERYEVESISRSIFDFKMRLTIKKIT   71 (96)
Q Consensus        12 ~~~~g~~~~l~c~~~~~~~~--~~~w~~~~--~~~-----~~~-----------~~~~~~~~~~~~~~~~~~~l~i~~~~   71 (96)
                      .+++|+++.|.|.+.+....  .+.|++..  ..+     +..           ..|+.+......   ....|.|.+++
T Consensus        11 ~~kPG~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwv~~i~~~~~~~~y~~s~kgR~tiS~D~s~---~t~~L~~~sL~   87 (124)
T d1yedb1          11 LVRPGTSVKLSCKTSGYIFTSYWIHWLKQSSGQGLEWIARIYPGTGGTYYNEKFKGKATLTADKSS---STAYMQLSSLK   87 (124)
T ss_dssp             EECTTCEEEEEEEEESSCGGGSCEEEEEECSSSCCEEEEEEETTTTEEEECGGGBTTEEEEEETTT---TEEEEEEESCC
T ss_pred             eECCCCCEEEEEEEcCCCccCCccccceECCCCceeeeeeccccccccccccccceeEEEEccCCc---ceEEecccccC
Confidence            47889999999999876533  57787632  111     111           123334332111   23568899999


Q ss_pred             CCCCeeEEEEEec
Q psy4613          72 KYDLGSYKCIAKN   84 (96)
Q Consensus        72 ~~d~g~y~c~~~~   84 (96)
                      .+|.+.|+|....
T Consensus        88 ~eDTAvYYCAR~~  100 (124)
T d1yedb1          88 SEDSAVYFCTRWG  100 (124)
T ss_dssp             GGGCEEEEEEECC
T ss_pred             CCcceEEEecccC
Confidence            9999999998543

>d1c5cl2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.77  E-value=9.3e-05  Score=33.05  Aligned_cols=70  Identities=14%  Similarity=0.216  Sum_probs=38.8

Q ss_pred             CCCcEEEEEEeeecc-cc-eeEEeeccceeEecccceEEE--E-eccccceEEEEEEEccCCCCCCeeEEEEEecCC
Q psy4613          15 IDTDVTLECYVEAYP-KS-INYWVRDQGDMVISSERYEVE--S-ISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSL   86 (96)
Q Consensus        15 ~g~~~~l~c~~~~~~-~~-~~~w~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~   86 (96)
                      ....+.|.|.+.+.. .. .+.|..++.... . ......  . ..+..|...+.|.+..-.-.....|.|.+....
T Consensus        19 ~~~~~~L~Clv~~f~P~~i~v~W~~ng~~~~-~-~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~~~~ytC~V~H~~   93 (107)
T d1c5cl2          19 KSGTASVVCLLNNFYPREAKVQWKVDNALQS-G-NSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQG   93 (107)
T ss_dssp             HTTEEEEEEEEEEEBSSCCEEEEEETTEECC-S-SEEEEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTT
T ss_pred             cCCceEEEEEEEEeeCCCCEEEEEECCEECC-C-CEEEecccccCCCCcEEEEEEEEECHHHhCCCCEEEEEEEECC
Confidence            356799999998853 32 788988764432 1 111111  0 111233345666665432122337999998753

>d1rzga1 b.1.1.1 (A:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.75  E-value=0.00026  Score=32.74  Aligned_cols=70  Identities=13%  Similarity=0.224  Sum_probs=44.5

Q ss_pred             eeecCCCcEEEEEEeeeccc--ceeEEeeccc----eeE---ec-----------ccceEEEEeccccceEEEEEEEccC
Q psy4613          11 VGAPIDTDVTLECYVEAYPK--SINYWVRDQG----DMV---IS-----------SERYEVESISRSIFDFKMRLTIKKI   70 (96)
Q Consensus        11 ~~~~~g~~~~l~c~~~~~~~--~~~~w~~~~~----~~~---~~-----------~~~~~~~~~~~~~~~~~~~l~i~~~   70 (96)
                      ..+++|+++.|.|.+.+...  ..+.|++...    +..   ..           ..|+.+......   ....|.|.++
T Consensus        10 ~~~kPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglewv~~i~~~~~~~~y~~s~kgR~tiS~D~s~---~t~yL~~~sL   86 (130)
T d1rzga1          10 EVKKPGSSVKVSCKASGGTFSNYAINWVRQAPGQGLEWMGGIIPIFNIAHYAQRFQGRVSITADEST---STAYMELSSL   86 (130)
T ss_dssp             EEECTTCCEEEEEECCSSCGGGCCEEEEEECTTCCCEEEEEEETTTTEEEECGGGBTTEEEEEETTT---TEEEEEECSC
T ss_pred             ceECCCCCEEEEEEEcCCCCCCCceEccccCCCcceeeeeeccccccccccccccccceEEeccccc---ceEEeeeeec
Confidence            34788999999999987543  3678876421    111   11           123333332111   2356889999


Q ss_pred             CCCCCeeEEEEEe
Q psy4613          71 TKYDLGSYKCIAK   83 (96)
Q Consensus        71 ~~~d~g~y~c~~~   83 (96)
                      +.+|.+.|.|...
T Consensus        87 ~~eDtA~YYCAr~   99 (130)
T d1rzga1          87 RSEDTAVFYCASP   99 (130)
T ss_dssp             CGGGCEEEEEEEC
T ss_pred             CCCccEEEEEEEe
Confidence            9999999999854

>d2b1hh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.75  E-value=0.00025  Score=32.53  Aligned_cols=70  Identities=14%  Similarity=0.225  Sum_probs=45.0

Q ss_pred             eeecCCCcEEEEEEeeecccc--eeEEeecc--cee--E---ec-----------ccceEEEEeccccceEEEEEEEccC
Q psy4613          11 VGAPIDTDVTLECYVEAYPKS--INYWVRDQ--GDM--V---IS-----------SERYEVESISRSIFDFKMRLTIKKI   70 (96)
Q Consensus        11 ~~~~~g~~~~l~c~~~~~~~~--~~~w~~~~--~~~--~---~~-----------~~~~~~~~~~~~~~~~~~~l~i~~~   70 (96)
                      ..+++|+++.|.|.+.|....  .+.|++..  ..+  .   ..           ..|+.+......   ....|.|.++
T Consensus        10 ~~~kpg~sl~LsC~~SG~~~~~~~~~W~RQ~PGkglewig~i~~~~~~~~ya~s~kgR~tiSrD~s~---~t~yL~~~~L   86 (124)
T d2b1hh1          10 EVKKSGESLKISCQTSGYSFSDYWIGWVRQMPGKGLEWMGIFYPGDSDSRYSPSFEGQVTMSADRST---NTAHLQWSSL   86 (124)
T ss_dssp             EEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTCEEEEETTT---TEEEEEESSC
T ss_pred             ceECCCCCEEEEEEEcCCCCcCCcCccceeCCCcceeeeeecCcccccccccccceeeEEEeecCCC---cEEEEeeecc
Confidence            347889999999999986533  57787632  111  1   10           123333332211   2356899999


Q ss_pred             CCCCCeeEEEEEe
Q psy4613          71 TKYDLGSYKCIAK   83 (96)
Q Consensus        71 ~~~d~g~y~c~~~   83 (96)
                      +.+|.+.|+|...
T Consensus        87 ~~eDTA~YYCAR~   99 (124)
T d2b1hh1          87 KPSDTALYYCARL   99 (124)
T ss_dssp             CGGGCEEEEEEEE
T ss_pred             ccccceEEEEeec
Confidence            9999999999754

>d1lo4h1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]

Probab=97.74  E-value=0.00024  Score=32.28  Aligned_cols=73  Identities=18%  Similarity=0.255  Sum_probs=46.5

Q ss_pred             eecCCCcEEEEEEeeecccc--eeEEeecc--cee--E---ec----------ccceEEEEeccccceEEEEEEEccCCC
Q psy4613          12 GAPIDTDVTLECYVEAYPKS--INYWVRDQ--GDM--V---IS----------SERYEVESISRSIFDFKMRLTIKKITK   72 (96)
Q Consensus        12 ~~~~g~~~~l~c~~~~~~~~--~~~w~~~~--~~~--~---~~----------~~~~~~~~~~~~~~~~~~~l~i~~~~~   72 (96)
                      .+.+|+++.|.|.+.+....  .+.|++..  ..+  .   ..          ..|+.+......   ....|.|.+++.
T Consensus        11 ~vkPG~Sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwl~~i~~~g~t~y~~s~kgR~tiSrD~s~---nt~~L~i~~l~~   87 (118)
T d1lo4h1          11 LVKPGGSLTLSCEASGFTLRTYGMSWVRQTPQMRLEWVASISYGGLLYFSDSVKGRFTISRDIVR---NILTLQMSRLRS   87 (118)
T ss_dssp             EECTTCCEEEEEEEESSCTTTSEEEEEEECTTCCEEEEEEECTTCCEEECTTTBTTBEEEEETTT---TEEEEEECSCCG
T ss_pred             eECCCCCeEEEEEECCCcccCCCcccccCCCCcceeeeeecccccchhhccccceeEEEeccccc---eeeeeccccccC
Confidence            46889999999999986543  67787642  111  1   00          123333332211   235689999999


Q ss_pred             CCCeeEEEEEecCCC
Q psy4613          73 YDLGSYKCIAKNSLG   87 (96)
Q Consensus        73 ~d~g~y~c~~~~~~g   87 (96)
                      +|.+.|.|......+
T Consensus        88 eDtA~YyCAr~~~~~  102 (118)
T d1lo4h1          88 EDTAIYYCARGTSFV  102 (118)
T ss_dssp             GGCEEEEEEEEETTT
T ss_pred             CcceEEEecccCCCC
Confidence            999999998654433

>d3frua1 b.1.1.2 (A:179-269) Fc (IgG) receptor, alpha-3 domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Fc (IgG) receptor, alpha-3 domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.73  E-value=0.0002  Score=31.03  Aligned_cols=67  Identities=16%  Similarity=0.177  Sum_probs=41.7

Q ss_pred             CCCcEEEEEEeeec-ccc-eeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCC
Q psy4613          15 IDTDVTLECYVEAY-PKS-INYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSL   86 (96)
Q Consensus        15 ~g~~~~l~c~~~~~-~~~-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~   86 (96)
                      .+..++|.|.+.+. |.. .+.|.+++....  ..........+..+...+.|.+..   .+...|.|.+....
T Consensus        14 ~~~~~~L~C~~~gF~P~~i~v~W~~ng~~~~--~~~~~~~~~~dgty~~~S~l~v~~---~~~~~ytC~V~H~s   82 (91)
T d3frua1          14 NSGSSVLTCAAFSFYPPELKFRFLRNGLASG--SGNCSTGPNGDGSFHAWSLLEVKR---GDEHHYQCQVEHEG   82 (91)
T ss_dssp             STTEEEEEEEEEEEBSSCCEEEEEETTEECC--CCEEEEEECSSSCEEEEEEEEEET---TCGGGEEEEEECTT
T ss_pred             CCCCEEEEEEEEeEECCCCEEEEEECCEeCC--ccCccceecCCCCEeEEEEEEECC---CCCCEEEEEEEeCC
Confidence            45678999999995 433 788998865432  222233333334555566676654   33458999998653

>d1mfah1 b.1.1.1 (H:251-367) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.73  E-value=0.00026  Score=32.16  Aligned_cols=70  Identities=14%  Similarity=0.343  Sum_probs=44.1

Q ss_pred             eeecCCCcEEEEEEeeeccc--ceeEEeecc--cee--E---ec-----------ccceEEEEeccccceEEEEEEEccC
Q psy4613          11 VGAPIDTDVTLECYVEAYPK--SINYWVRDQ--GDM--V---IS-----------SERYEVESISRSIFDFKMRLTIKKI   70 (96)
Q Consensus        11 ~~~~~g~~~~l~c~~~~~~~--~~~~w~~~~--~~~--~---~~-----------~~~~~~~~~~~~~~~~~~~l~i~~~   70 (96)
                      ..+++|+++.|.|.+.|...  ..+.|++..  ..+  +   ..           ..+..+......   ....|.|.++
T Consensus        10 ~~~kPG~sl~LsC~~SG~s~s~~~~~WvRQ~PGkglEwl~~i~~~~~~~~ya~~~~~R~t~s~D~s~---~~~~L~i~~L   86 (117)
T d1mfah1          10 VVARPGASVKMSCKASGYTFTNYWMHWIKQRPGQGLEWIGAIYPGNSATFYNHKFRAKTKLTAVTST---TTAYMELSSL   86 (117)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSEEEEEEEETTTEEEEEEEEETTTTEEEECTTTTTTEEEEEETTT---TEEEEEECSC
T ss_pred             ceECCCCCEEEEEEEcccCCCCCceEeeeeCCCCcceeeEccCcccccccccccceeeEEEEcccCc---cEeEeeeccc
Confidence            44688999999999987543  357787642  111  1   10           113333322111   2356899999


Q ss_pred             CCCCCeeEEEEEe
Q psy4613          71 TKYDLGSYKCIAK   83 (96)
Q Consensus        71 ~~~d~g~y~c~~~   83 (96)
                      +.+|.+.|+|...
T Consensus        87 ~~eDtAvYYCAr~   99 (117)
T d1mfah1          87 TSEDSAVYYCTRG   99 (117)
T ss_dssp             CGGGCEEEEEEEE
T ss_pred             CCCcceEEEEecc
Confidence            9999999999754

>d1de4a1 b.1.1.2 (A:182-275) Hemochromatosis protein Hfe, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Hemochromatosis protein Hfe, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.72  E-value=0.00022  Score=31.17  Aligned_cols=70  Identities=19%  Similarity=0.330  Sum_probs=41.5

Q ss_pred             ecCCCcEEEEEEeeec-ccc-eeEEeeccceeEecc-cceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecC
Q psy4613          13 APIDTDVTLECYVEAY-PKS-INYWVRDQGDMVISS-ERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNS   85 (96)
Q Consensus        13 ~~~g~~~~l~c~~~~~-~~~-~~~w~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~   85 (96)
                      ...+...+|.|.+.+. |.. .+.|.+++....... ............+...+.|.+..   .+...|.|.+...
T Consensus        12 ~~~~~~~tL~C~~~gFyP~~i~v~W~~dg~~~~~~~~~~~~~~~~~~~t~~~~s~l~v~~---~~~~~ytC~V~H~   84 (94)
T d1de4a1          12 HVTSSVTTLRCRALNYYPQNITMKWLKDKQPMDAKEFEPKDVLPNGDGTYQGWITLAVPP---GEEQRYTCQVEHP   84 (94)
T ss_dssp             EECSSCEEEEEEEEEEBSSCCEEEEEETTEECCGGGSCCCEEEECTTSCEEEEEEEEECT---TCGGGEEEEEECT
T ss_pred             cCCCCCEEEEEEEeeEECCCCEEEEEECCEECccCcccccceEeCCCceEEEEEEEEECC---CCCCEEEEEEEeC
Confidence            3456778999999994 444 788998865543211 11222233333343445555543   3445899999875

>d1t7va1 b.1.1.2 (A:184-277) Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.69  E-value=0.00025  Score=30.90  Aligned_cols=69  Identities=14%  Similarity=0.198  Sum_probs=40.2

Q ss_pred             cCCCcEEEEEEeeecccc--eeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCC
Q psy4613          14 PIDTDVTLECYVEAYPKS--INYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSL   86 (96)
Q Consensus        14 ~~g~~~~l~c~~~~~~~~--~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~   86 (96)
                      ..++.++|.|.+.+.-+.  .+.|.+++.... ...........+..+...+.+.+..   .+...|.|.+....
T Consensus        13 ~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~-~~~~~~~~~~~~~t~~~~s~l~~~~---~~~~~ytC~V~H~s   83 (94)
T d1t7va1          13 APGEKKKLKCLAYDFYPGKIDVHWTRAGEVQE-PELRGDVLHNGNGTYQSWVVVAVPP---QDTAPYSCHVQHSS   83 (94)
T ss_dssp             CTTSCEEEEEEEEEEBSSCEEEEEEETTEECC-CSEEEEEEETTTTEEEEEEEEEECT---TCCSCEEEEEEETT
T ss_pred             CCCCCEEEEEEEEeEECCCCEEEEEECCEECC-CcEEeeeecCCCCeEEEEEEeEeCC---CCCCEEEEEEEECC
Confidence            457889999999995433  788998865432 1111222222223343445555443   34457999998653

>d2h26a1 b.1.1.2 (A:184-279) CD1, alpha-3 domain {Human (Homo sapiens), CD1a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: CD1, alpha-3 domain
species: Human (Homo sapiens), CD1a [TaxId: 9606]

Probab=97.69  E-value=0.00026  Score=31.02  Aligned_cols=68  Identities=18%  Similarity=0.362  Sum_probs=39.7

Q ss_pred             cCCCcEEEEEEeeec-ccc-eeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecC
Q psy4613          14 PIDTDVTLECYVEAY-PKS-INYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNS   85 (96)
Q Consensus        14 ~~g~~~~l~c~~~~~-~~~-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~   85 (96)
                      ..++.++|.|.+.+. |.. .+.|.+++.... ...........+..+...+.|.+..   .+...|.|.+...
T Consensus        14 ~~~~~vtL~C~a~gF~P~~i~v~W~~~~~~~~-~~~~~~~~~~~dgty~~~S~L~v~~---~~~~~ytC~V~H~   83 (96)
T d2h26a1          14 PGPGRLQLVCHVSGFYPKPVWVMWMRGEQEQQ-GTQLGDILPNANWTWYLRATLDVAD---GEAAGLSCRVKHS   83 (96)
T ss_dssp             CSTTEEEEEEEEEEEBSSCEEEEEEETTEECT-TCEECCCEECTTSCEEEEEEEEEEG---GGCTTEEEEEEEG
T ss_pred             CCCCeEEEEEEEEEEECCCcEEEEEECcccCC-CceeCccEeCCCCcEEEEEEEEEeC---ccCCEEEEEEEeC
Confidence            345689999999985 444 788988754331 1111112223333444556666654   2344799998864

>d1ow0a2 b.1.1.2 (A:343-450) Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.68  E-value=7.8e-05  Score=33.35  Aligned_cols=86  Identities=15%  Similarity=0.290  Sum_probs=44.8

Q ss_pred             CCeEEe-cCceeeecCCCcEEEEEEeeecc-cc-eeEEeeccceeEecccceE-EE---EeccccceEEEEEEEccCCCC
Q psy4613           1 HPVIHV-PNQLVGAPIDTDVTLECYVEAYP-KS-INYWVRDQGDMVISSERYE-VE---SISRSIFDFKMRLTIKKITKY   73 (96)
Q Consensus         1 ~p~~~~-~~~~~~~~~g~~~~l~c~~~~~~-~~-~~~w~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~l~i~~~~~~   73 (96)
                      +|.+.. ++.......++.+.|.|.+.+.. .. .+.|.+++........... ..   ......+...+.|.+..-.-.
T Consensus         4 ~P~V~~~~p~~~e~~~~~~~tl~C~~~~f~P~~i~v~W~~~g~~~~~~~~~t~~~~~~~~~~~gtys~~S~L~v~~~~w~   83 (108)
T d1ow0a2           4 RPEVHLLPPPSEELALNELVTLTCLARGFSPKDVLVRWLQGSQELPREKYLTWASRQEPSQGTTTFAVTSILRVAAEDWK   83 (108)
T ss_dssp             CCEEEEECCCTTTTTSSSEEEEEEEEEEESSSCCEEEEEETTEECCGGGSEECCCEECSCSSSCCEEEEEEEEEEHHHHH
T ss_pred             CCEEEEECCCHHHhccCCceEEEEEEEEeECCCEEEEEEECCeEcCCCceEcccceecccCCCCcEEEEEEEEEcHHHhC
Confidence            354543 23333345678899999999853 33 7899987654421110000 00   011122334455655543322


Q ss_pred             CCeeEEEEEecCC
Q psy4613          74 DLGSYKCIAKNSL   86 (96)
Q Consensus        74 d~g~y~c~~~~~~   86 (96)
                      ....|.|.+....
T Consensus        84 ~g~~ytC~V~H~s   96 (108)
T d1ow0a2          84 KGDTFSCMVGHEA   96 (108)
T ss_dssp             HTCCEEEEEECTT
T ss_pred             CCCEEEEEEEeCC
Confidence            2348999998743

>d1bz7b1 b.1.1.1 (B:1-122) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=97.68  E-value=0.00033  Score=32.06  Aligned_cols=70  Identities=17%  Similarity=0.256  Sum_probs=45.2

Q ss_pred             eecCCCcEEEEEEeeecccc--eeEEeecc--c--eeE---e-----------cccceEEEEeccccceEEEEEEEccCC
Q psy4613          12 GAPIDTDVTLECYVEAYPKS--INYWVRDQ--G--DMV---I-----------SSERYEVESISRSIFDFKMRLTIKKIT   71 (96)
Q Consensus        12 ~~~~g~~~~l~c~~~~~~~~--~~~w~~~~--~--~~~---~-----------~~~~~~~~~~~~~~~~~~~~l~i~~~~   71 (96)
                      .+++|+++.|.|.+.+....  .+.|++..  .  +.+   .           ...|+.+......   ....|.|.+++
T Consensus        11 lvkPg~sl~LsC~~SG~s~s~y~~~WvRQ~PGkglewl~~i~~~~~~~~Y~~s~kgRftiSrD~s~---~t~yL~m~sL~   87 (122)
T d1bz7b1          11 LVQPGGSRKLSCAASGFTFSNFGMHWVRQAPEKGLEWVAYISSGGSSINYADTVKGRFTISRDNPK---NTLFLQMTSLR   87 (122)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEECSSSCEEEEEEECSSSSCEEECGGGTTTEEEEEEGGG---TEEEEEECSCC
T ss_pred             eECCCCCeEEEEEEcCCCCcCCceEccccCCCcceeeeeecCcccccccccceeeeeEEEeccCCc---cEeEeeeeeec
Confidence            36789999999999876533  57887642  1  111   0           0124444332211   23568999999


Q ss_pred             CCCCeeEEEEEec
Q psy4613          72 KYDLGSYKCIAKN   84 (96)
Q Consensus        72 ~~d~g~y~c~~~~   84 (96)
                      .+|.+.|.|....
T Consensus        88 ~eDTAvYYCAr~~  100 (122)
T d1bz7b1          88 SEDTAIYYCTRGG  100 (122)
T ss_dssp             GGGCEEEEEEEEC
T ss_pred             ccCceEEEeecCC
Confidence            9999999998654

>d1q9rb1 b.1.1.1 (B:1-111) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=97.67  E-value=0.00033  Score=32.01  Aligned_cols=70  Identities=14%  Similarity=0.311  Sum_probs=45.0

Q ss_pred             eecCCCcEEEEEEeeecccc--eeEEeecc--c--eeE---e-c------------ccceEEEEeccccceEEEEEEEcc
Q psy4613          12 GAPIDTDVTLECYVEAYPKS--INYWVRDQ--G--DMV---I-S------------SERYEVESISRSIFDFKMRLTIKK   69 (96)
Q Consensus        12 ~~~~g~~~~l~c~~~~~~~~--~~~w~~~~--~--~~~---~-~------------~~~~~~~~~~~~~~~~~~~l~i~~   69 (96)
                      .+++|+++.|.|.+.+....  .+.|++..  .  ...   . .            ..|+.+......   ....|.|.+
T Consensus        11 ~vkpg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewv~~i~~~~~~~~~~Y~~s~kgRftiSrD~s~---nt~~L~~~s   87 (122)
T d1q9rb1          11 LVQSGGSLRLSCATSGFTFTDYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRDNSQ---SILYLQMNT   87 (122)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEETTT---TEEEEEECS
T ss_pred             eECCCCCEEEEEEEcCCCCcCCccCccccCCCcceeeeeeccccccCCcchhchheeecceeeeeccc---ceeccceee
Confidence            47789999999999875543  67788642  1  111   0 0            123333332211   235689999


Q ss_pred             CCCCCCeeEEEEEec
Q psy4613          70 ITKYDLGSYKCIAKN   84 (96)
Q Consensus        70 ~~~~d~g~y~c~~~~   84 (96)
                      ++.+|.+.|+|....
T Consensus        88 L~~eDTAvYYCar~~  102 (122)
T d1q9rb1          88 LRAEDSATYYCARDH  102 (122)
T ss_dssp             CCGGGCEEEEEEECC
T ss_pred             eccCcceEEEEEecC
Confidence            999999999998654

>d3cx5j1 b.1.1.1 (J:1-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Probab=97.66  E-value=0.00031  Score=32.37  Aligned_cols=69  Identities=19%  Similarity=0.339  Sum_probs=43.5

Q ss_pred             eecCCCcEEEEEEeeeccc---ceeEEeec--ccee--E---ecc----------cceEEEEeccccceEEEEEEEccCC
Q psy4613          12 GAPIDTDVTLECYVEAYPK---SINYWVRD--QGDM--V---ISS----------ERYEVESISRSIFDFKMRLTIKKIT   71 (96)
Q Consensus        12 ~~~~g~~~~l~c~~~~~~~---~~~~w~~~--~~~~--~---~~~----------~~~~~~~~~~~~~~~~~~l~i~~~~   71 (96)
                      .+++|+++.|.|.+.+...   ..+.|++.  +..+  +   ...          .|+.+....   ......|.|..++
T Consensus        11 lvkPg~sl~LsC~~SG~s~~s~y~~~WvRQ~PGkglewl~~i~~~g~~~y~~s~kgR~tis~d~---s~nt~yL~l~~l~   87 (127)
T d3cx5j1          11 LVQPSQSLSLTCSVTGYSITSGYYWNWIRLFPGNKLEWVGYISNVGDNNYNPSLKDRLSITRDT---SKNQFFLKLNSVT   87 (127)
T ss_dssp             EECTTSCEEEEEEEESSCTTTSSEEEEEEEETTTEEEEEEEEETTSCEEECTTTTTTBCCEEET---TTTEEEEEECSCC
T ss_pred             eECCCCCEEEEEEEecccccCCCcceeeeECCCcchheeeeecccccchhcccccccceeeccc---ccceeecceeccc
Confidence            4688999999999998643   35788874  2211  1   011          122222211   1123569999999


Q ss_pred             CCCCeeEEEEEe
Q psy4613          72 KYDLGSYKCIAK   83 (96)
Q Consensus        72 ~~d~g~y~c~~~   83 (96)
                      .+|.+.|+|...
T Consensus        88 ~eDtAvYyCAr~   99 (127)
T d3cx5j1          88 TEDTATYYCARS   99 (127)
T ss_dssp             GGGCEEEEEEEE
T ss_pred             cccceEEEeeee
Confidence            999999999853

>d1lmka1 b.1.1.1 (A:2-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.66  E-value=0.00036  Score=32.06  Aligned_cols=69  Identities=14%  Similarity=0.250  Sum_probs=44.7

Q ss_pred             eeecCCCcEEEEEEeeecccc--eeEEeecc--cee-----Eec-----------ccceEEEEeccccceEEEEEEEccC
Q psy4613          11 VGAPIDTDVTLECYVEAYPKS--INYWVRDQ--GDM-----VIS-----------SERYEVESISRSIFDFKMRLTIKKI   70 (96)
Q Consensus        11 ~~~~~g~~~~l~c~~~~~~~~--~~~w~~~~--~~~-----~~~-----------~~~~~~~~~~~~~~~~~~~l~i~~~   70 (96)
                      ..+++|+++.|.|.+.+....  .+.|++..  ..+     +..           ..|+.+......   ....|.|.++
T Consensus         9 ~~~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgRfTiS~D~s~---nt~yL~m~~L   85 (126)
T d1lmka1           9 ELMKPGRSLKISCKTTGYIFSNYWIEWVKQRPGHGLEWIGKILPGGGSNTYNDKFKGKATFTADTSS---NIAYMQLSSL   85 (126)
T ss_dssp             EEECTTCCEEEEEEEESSCTTTEEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTT---TEEEEEECSC
T ss_pred             ceECCCCCeEEEEEEccCCCCCCCCcceeeCCCccceeeeecCccccchhhhhhhccceEEEecCCc---cEEEeeeccc
Confidence            347889999999999886533  57787632  111     110           133344332211   2367899999


Q ss_pred             CCCCCeeEEEEE
Q psy4613          71 TKYDLGSYKCIA   82 (96)
Q Consensus        71 ~~~d~g~y~c~~   82 (96)
                      +.+|.+.|+|..
T Consensus        86 ~~eDTAvYYCAr   97 (126)
T d1lmka1          86 TSEDSAVYYCAR   97 (126)
T ss_dssp             CGGGCEEEEEEE
T ss_pred             CCCcceEEEEee
Confidence            999999999974

>d1dlfh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=97.66  E-value=0.00035  Score=31.83  Aligned_cols=70  Identities=16%  Similarity=0.320  Sum_probs=44.7

Q ss_pred             eecCCCcEEEEEEeeecc--cceeEEeecc--ceeE-----ec-------------ccceEEEEeccccceEEEEEEEcc
Q psy4613          12 GAPIDTDVTLECYVEAYP--KSINYWVRDQ--GDMV-----IS-------------SERYEVESISRSIFDFKMRLTIKK   69 (96)
Q Consensus        12 ~~~~g~~~~l~c~~~~~~--~~~~~w~~~~--~~~~-----~~-------------~~~~~~~~~~~~~~~~~~~l~i~~   69 (96)
                      .+++|+++.|.|.+.+..  ...+.|++..  ..+.     ..             ..|+.+......   ....|.|.+
T Consensus        11 ~vkpG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwv~~i~~~~~~~~~~ya~s~kgRftiS~D~s~---n~~~L~~~~   87 (120)
T d1dlfh_          11 LVQPGGSMKLSCATSGFTFSDAWMDWVRQSPEKGLEWVAEIRNKANNHATYYAESVKGRFTISRDDSK---RRVYLQMNT   87 (120)
T ss_dssp             EECTTCCEEEEEEEESSCTTTCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEETTT---TEEEEEECS
T ss_pred             eECCCCCeEEEEEECCccCcCCceEeeeeCCCcceeeeeeccccccccceeechhceecceeeccccc---ceeccceee
Confidence            468899999999998754  3367787642  1111     00             013333321111   235689999


Q ss_pred             CCCCCCeeEEEEEec
Q psy4613          70 ITKYDLGSYKCIAKN   84 (96)
Q Consensus        70 ~~~~d~g~y~c~~~~   84 (96)
                      ++.+|.+.|.|....
T Consensus        88 L~~eDtAvYYCA~~~  102 (120)
T d1dlfh_          88 LRAEDTGIYYCTGIY  102 (120)
T ss_dssp             CCGGGCEEEEEEEEB
T ss_pred             ccCCCceEEEeeEec
Confidence            999999999998654

>d1nfdf1 b.1.1.1 (F:1-114) Immunoglobulin heavy chain variable domain, VH {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.64  E-value=0.00038  Score=31.77  Aligned_cols=71  Identities=17%  Similarity=0.331  Sum_probs=44.3

Q ss_pred             eeecCCCcEEEEEEeeecccc--eeEEeecc--cee--E---e---c----------ccceEEEEeccccceEEEEEEEc
Q psy4613          11 VGAPIDTDVTLECYVEAYPKS--INYWVRDQ--GDM--V---I---S----------SERYEVESISRSIFDFKMRLTIK   68 (96)
Q Consensus        11 ~~~~~g~~~~l~c~~~~~~~~--~~~w~~~~--~~~--~---~---~----------~~~~~~~~~~~~~~~~~~~l~i~   68 (96)
                      ..+++|+++.|.|.+.+....  .+.|++..  ..+  .   .   .          ..|+.+....   ......|.|.
T Consensus        10 ~~vkPG~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwv~~i~~~~~~~~t~Ya~s~kgR~tiSrD~---s~nt~yL~~~   86 (121)
T d1nfdf1          10 DLVQPGSSLKVSCAASGFTFSDFWMYWVRQAPGKGLEWVGRIKNIPNNYATEYADSVRGRFTISRDD---SRNSIYLQMN   86 (121)
T ss_dssp             EEECTTCEEEEEEEEESSCGGGEEEEEEEECTTSCEEEEEEECCTTTTTCEEECGGGTTTBCCEECT---TTSEEEEEEE
T ss_pred             ceECCCCCEEEEEEEcCCCCcCCceeeceecCCccceeeeeecccccccccccchheeeeeEEcccc---ccceeeceec
Confidence            357899999999999875543  56787632  111  0   0   0          1122222211   1123568999


Q ss_pred             cCCCCCCeeEEEEEec
Q psy4613          69 KITKYDLGSYKCIAKN   84 (96)
Q Consensus        69 ~~~~~d~g~y~c~~~~   84 (96)
                      +++.+|.+.|+|....
T Consensus        87 ~L~~eDTAvYYCAr~~  102 (121)
T d1nfdf1          87 RLRVDDTAIYYCTRAG  102 (121)
T ss_dssp             SCCGGGCEECEEEEEE
T ss_pred             ccCCCcceEEEEeccC
Confidence            9999999999998654

>d1rzfh1 b.1.1.1 (H:2-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.63  E-value=0.00044  Score=32.06  Aligned_cols=70  Identities=16%  Similarity=0.309  Sum_probs=44.6

Q ss_pred             eecCCCcEEEEEEeeecccc--eeEEeecc--cee-----Eec-----------ccceEEEEeccccceEEEEEEEccCC
Q psy4613          12 GAPIDTDVTLECYVEAYPKS--INYWVRDQ--GDM-----VIS-----------SERYEVESISRSIFDFKMRLTIKKIT   71 (96)
Q Consensus        12 ~~~~g~~~~l~c~~~~~~~~--~~~w~~~~--~~~-----~~~-----------~~~~~~~~~~~~~~~~~~~l~i~~~~   71 (96)
                      .+++|+++.|.|.+.+....  .+.|++..  ..+     +..           ..|+.+.....   .....|.|.+++
T Consensus        10 ~vkPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgR~tis~D~s---~~t~~L~~~~L~   86 (133)
T d1rzfh1          10 VNKPGSSVKVSCQASGATLNSHAFSWVRQAPGQGLEWMAGIIPIFGSSHYAQKFRGRVTISADES---TRTVYLHLRGLR   86 (133)
T ss_dssp             EECTTCCEEEEEEESSSCSTTEEEEEEEECTTCCEEEEEEEEGGGTEEEECGGGTTTEEEEEETT---TTEEEEEECSCC
T ss_pred             eECCCCCEEEEEEEcCCCccCCCCccceECCCCceEEEeecCCccccccccccccccEEEEeccC---cceeEEeeccCC
Confidence            47889999999999875433  56787632  111     100           12334333211   123568899999


Q ss_pred             CCCCeeEEEEEec
Q psy4613          72 KYDLGSYKCIAKN   84 (96)
Q Consensus        72 ~~d~g~y~c~~~~   84 (96)
                      .+|.+.|.|....
T Consensus        87 ~eDtA~YYCAr~~   99 (133)
T d1rzfh1          87 SDDTAVYYCASNS   99 (133)
T ss_dssp             GGGCEEEEEEEEE
T ss_pred             CCCCEEEEeeecc
Confidence            9999999997653

>d1k5na1 b.1.1.2 (A:182-276) Class I MHC, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.61  E-value=0.00035  Score=30.47  Aligned_cols=67  Identities=19%  Similarity=0.354  Sum_probs=36.9

Q ss_pred             CCcEEEEEEeeecccc--eeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecC
Q psy4613          16 DTDVTLECYVEAYPKS--INYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNS   85 (96)
Q Consensus        16 g~~~~l~c~~~~~~~~--~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~   85 (96)
                      ++.+.|.|.+.+..+.  .+.|.+++...................+...+.+.+..   .+...|.|.+...
T Consensus        15 ~~~~~L~C~~~gFyP~~i~vtW~~~g~~~~~~~~~~~~~~~~~~~~~~~s~l~v~~---~~~~~ytC~V~H~   83 (95)
T d1k5na1          15 DHEATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDRTFQKWAAVVVPS---GEEQRYTCHVQHE   83 (95)
T ss_dssp             TTEEEEEEEEEEEBSSCCEEEEEETTEECGGGCEECCCEECSSSCEEEEEEEEEET---TCGGGEEEEEECT
T ss_pred             CCCEEEEEEEEeEeCCCCEEEEEECCEEcCCCceeccEEcCCCCeEEEEEEEEEEc---CCCCEEEEEEEEC
Confidence            5678999999996544  57899876543211111011111122232345555543   2334799999864

>d2fb4h1 b.1.1.1 (H:1-119) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=97.59  E-value=0.00049  Score=31.70  Aligned_cols=70  Identities=19%  Similarity=0.362  Sum_probs=44.7

Q ss_pred             eecCCCcEEEEEEeeeccc--ceeEEeecc--cee--E---ec-----------ccceEEEEeccccceEEEEEEEccCC
Q psy4613          12 GAPIDTDVTLECYVEAYPK--SINYWVRDQ--GDM--V---IS-----------SERYEVESISRSIFDFKMRLTIKKIT   71 (96)
Q Consensus        12 ~~~~g~~~~l~c~~~~~~~--~~~~w~~~~--~~~--~---~~-----------~~~~~~~~~~~~~~~~~~~l~i~~~~   71 (96)
                      .+++|+++.|.|.+.|...  ..+.|++..  ..+  .   ..           ..|+.+......   ....|.|.+++
T Consensus        11 ~~kpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEw~~~i~~~~~~~~y~~~~kgR~Tis~D~s~---~t~yL~~~~L~   87 (127)
T d2fb4h1          11 VVQPGRSLRLSCSSSGFIFSSYAMYWVRQAPGKGLEWVAIIWDDGSDQHYADSVKGRFTISRNDSK---NTLFLQMDSLR   87 (127)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECGGGBTTEEEEEETTT---TEEEEEECSCC
T ss_pred             eECCCCCeEEEEEECCCCccCCceeeeecCCCcceeeeeecccccccchhcccccceEEEeccCCc---cEEEeeeeeee
Confidence            4678999999999987543  367787642  111  0   00           123333332211   23568999999


Q ss_pred             CCCCeeEEEEEec
Q psy4613          72 KYDLGSYKCIAKN   84 (96)
Q Consensus        72 ~~d~g~y~c~~~~   84 (96)
                      .+|.+.|+|....
T Consensus        88 ~eDTA~YYCAr~~  100 (127)
T d2fb4h1          88 PEDTGVYFCARDG  100 (127)
T ss_dssp             GGGCEEEEEEEEC
T ss_pred             ecceeEEEEEEec
Confidence            9999999998654

>d1fp5a1 b.1.1.2 (A:336-438) Immunoglobulin heavy chain epsilon constant domain 3, CH3-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 3, CH3-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.59  E-value=0.00041  Score=30.67  Aligned_cols=79  Identities=16%  Similarity=0.198  Sum_probs=41.1

Q ss_pred             ecCceeeecCCCcEEEEEEeeecccc----eeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEE
Q psy4613           6 VPNQLVGAPIDTDVTLECYVEAYPKS----INYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCI   81 (96)
Q Consensus         6 ~~~~~~~~~~g~~~~l~c~~~~~~~~----~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~   81 (96)
                      .+|.......++.++|.|.+.+..+.    .+.|.+++...... ............+...+.|.+..-.-.....|.|.
T Consensus         6 ~pPs~~~l~~~~~~tL~C~v~gf~P~~~~v~~~W~~~~~~~~~~-~~~~~~~~~~gt~s~~S~L~v~~~~w~~g~~~tC~   84 (103)
T d1fp5a1           6 SRPSPFDLFIRKSPTITCLVVDLAPSKGTVNLTWSRASGKPVNH-STRKEEKQRNGTLTVTSTLPVGTRDWIEGETYQCR   84 (103)
T ss_dssp             ECCCHHHHHTTCCCEEEEEEEESSCCSSCCEEEEEETTCCCCCC-CEEEEEEETTTEEEEEEEEECCHHHHHTTCCEEEE
T ss_pred             eCcCHHHHhhCCCeEEEEEEEeeECCCceEEEEEcCCCceeccc-EEcccEECCCCCEEEEEEEEEcHHHhCCCCeEEEE
Confidence            34444445568889999999985432    45676665443211 11111122222333345555443221223479999


Q ss_pred             EecC
Q psy4613          82 AKNS   85 (96)
Q Consensus        82 ~~~~   85 (96)
                      +...
T Consensus        85 V~H~   88 (103)
T d1fp5a1          85 VTHP   88 (103)
T ss_dssp             EECS
T ss_pred             EEEC
Confidence            9874

>d1ieha_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=97.56  E-value=0.00057  Score=31.70  Aligned_cols=70  Identities=14%  Similarity=0.269  Sum_probs=44.8

Q ss_pred             eecCCCcEEEEEEeeeccc--ceeEEeecc--c--eeE---ec-----------ccceEEEEeccccceEEEEEEEccCC
Q psy4613          12 GAPIDTDVTLECYVEAYPK--SINYWVRDQ--G--DMV---IS-----------SERYEVESISRSIFDFKMRLTIKKIT   71 (96)
Q Consensus        12 ~~~~g~~~~l~c~~~~~~~--~~~~w~~~~--~--~~~---~~-----------~~~~~~~~~~~~~~~~~~~l~i~~~~   71 (96)
                      .+++|+++.|.|.+.+...  ..+.|++..  .  +..   ..           ..|+.+......   ....|.|.+++
T Consensus        11 lvkPG~Sl~LsC~~SG~s~~~y~~~WvRQ~PGkgLEWlg~I~~~~~~~~Ya~s~kgRfTiSrD~s~---~t~yL~i~~L~   87 (135)
T d1ieha_          11 LVQPGGSLRVSCAASGFTFSSYHMAWVRQAPGKGLEWVSTINPGDGSTYYADSVKGRFTISRDNAK---NTLYLQMNSLK   87 (135)
T ss_dssp             EECTTCEEEEEEEEESSCTTTSCEEEEEECSSCCCEEEEEECSSSCCEEECSTTTTTEEEEECTTT---CCEEEEEESCC
T ss_pred             eECCCCCeEEEEEEcCCCCcCCceeccccCCCCceeeeeccCCccccccccccceEeEEEeccCCC---ceeEecEeeeC
Confidence            4678999999999987543  357787642  1  111   00           123333332211   23568899999


Q ss_pred             CCCCeeEEEEEec
Q psy4613          72 KYDLGSYKCIAKN   84 (96)
Q Consensus        72 ~~d~g~y~c~~~~   84 (96)
                      .+|.+.|+|....
T Consensus        88 ~eDTAvYYCAr~~  100 (135)
T d1ieha_          88 SEDTAVYYCAKYS  100 (135)
T ss_dssp             SSSCEEEEEEEBS
T ss_pred             cccceeeEEEEec
Confidence            9999999998664

>d3b5ha2 b.1.1.4 (A:23-102) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.56  E-value=0.00036  Score=29.31  Aligned_cols=69  Identities=13%  Similarity=0.247  Sum_probs=42.0

Q ss_pred             ecCCCcEEEEEEeeecccc--eeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCceE
Q psy4613          13 APIDTDVTLECYVEAYPKS--INYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVE   90 (96)
Q Consensus        13 ~~~g~~~~l~c~~~~~~~~--~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~~   90 (96)
                      ...|..+.|.|.......+  -.+|.+++..+.... ...          ......+..  ..++|.|.|.+.. .-...
T Consensus         9 ~~~~sk~~LtCnLt~s~~~i~ghrW~K~gkvl~ed~-~~~----------~~tey~V~~--~D~SGeY~CVFl~-~P~~~   74 (80)
T d3b5ha2           9 EDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDA-LPG----------QKTEFKVDS--DDQWGEYSCVFLP-EPMGT   74 (80)
T ss_dssp             EEETTEEEEEEEEESCSSCCCEEEEESSSEEEECTT-CCC----------SEEEEEECG--GGCCEEEEEEEES-TTSCE
T ss_pred             ccCCCCEEEEEECCCCCCceeeeEEeeCCEEccccC-CCC----------CceEEEEec--CCCCceEEEEEcC-CCcce
Confidence            4568889999998765443  567999876654221 110          123345554  6678999999764 23344


Q ss_pred             EEEEe
Q psy4613          91 SSIRL   95 (96)
Q Consensus        91 ~~~~l   95 (96)
                      +.+.+
T Consensus        75 a~IeV   79 (80)
T d3b5ha2          75 ANIQL   79 (80)
T ss_dssp             EEEEE
T ss_pred             eEEEe
Confidence            44544

>d1kcvh2 b.1.1.2 (H:117-217) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.55  E-value=0.00046  Score=30.42  Aligned_cols=70  Identities=17%  Similarity=0.281  Sum_probs=39.0

Q ss_pred             cCCCcEEEEEEeeecccc--eeEEeeccceeEe-cccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCc
Q psy4613          14 PIDTDVTLECYVEAYPKS--INYWVRDQGDMVI-SSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGE   88 (96)
Q Consensus        14 ~~g~~~~l~c~~~~~~~~--~~~w~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~   88 (96)
                      ..+..++|.|.+.+..+.  .+.|..++..... ....  .  ..+..+...+.|.|..-.- +.+.|.|.+......
T Consensus        18 ~~~~~~tl~Cl~~gf~P~~i~v~W~~~~~~~~~~~~~~--~--~~~g~~s~~S~L~v~~~~w-~~~~ytC~V~H~~~~   90 (101)
T d1kcvh2          18 AAASAVTLGCLVKGYFPEPVTVAWNEGALSSGVLTVSA--V--LQSGLYTLSSNTTVASGTW-PSASVTCLVAHPKSS   90 (101)
T ss_dssp             TTCSEEEEEEEEEEEBSSCCEEEEGGGTCCTTEEECCC--E--EETTEEEEEEEEEEETTTT-TTSCCEEEEEEGGGT
T ss_pred             cCCCeEEEEEEEEEEeCCCCEEEEecCCCcccceeeee--e--cCCCCEEEEEEEEEchhhc-CCCeEEEEEEeCCCC
Confidence            457889999999985333  6889765422110 0000  1  1112232446666654443 245799999875443

>d1xaua_ b.1.1.4 (A:) B and T lymphocyte attenuator, Btla {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: B and T lymphocyte attenuator, Btla
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.55  E-value=0.00041  Score=29.70  Aligned_cols=77  Identities=22%  Similarity=0.281  Sum_probs=52.5

Q ss_pred             ceeeecCCCcEEEEEEeee-cccceeEEeeccceeEe--c--ccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEe
Q psy4613           9 QLVGAPIDTDVTLECYVEA-YPKSINYWVRDQGDMVI--S--SERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAK   83 (96)
Q Consensus         9 ~~~~~~~g~~~~l~c~~~~-~~~~~~~w~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~   83 (96)
                      ....+..|..+.|.|.+.= ...|.+.|-+.++....  +  ......+....+.  ....|.+..+...|.|.|.|.+.
T Consensus        11 S~hs~~~G~~f~leCPVkYC~~RPnVtWCKlngt~cv~Le~~pq~~TsW~e~~ni--s~FvLhF~pvl~sDnGsYrCSan   88 (104)
T d1xaua_          11 SKHSAWTGELFKIECPVKYCVHRPNVTWCKHNGTIWVPLEVGPQLYTSWEENRSV--PVFVLHFKPIHLSDNGSYSCSTN   88 (104)
T ss_dssp             EEEEECTTSCEEEEEEEECSSSCCCEEEEEECSSSEEECCCBTTEEEEEECSSSS--CEEEEEETTCCGGGCEEEEEEEE
T ss_pred             ceeeEecCCceEecCcchhhcCCCCcEEEEeCCcEEEEeecCCccccchhhcCCe--eEEEEEeeeeeecCCCceEEecC
Confidence            3456788999999999763 45778999875544322  1  1233344333232  35678999999999999999987


Q ss_pred             cCCC
Q psy4613          84 NSLG   87 (96)
Q Consensus        84 ~~~g   87 (96)
                      -..+
T Consensus        89 f~s~   92 (104)
T d1xaua_          89 FNSQ   92 (104)
T ss_dssp             ETTE
T ss_pred             CChh
Confidence            5544

>d1hxmb2 b.1.1.2 (B:124-230) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=97.52  E-value=0.00056  Score=30.46  Aligned_cols=71  Identities=11%  Similarity=0.200  Sum_probs=39.3

Q ss_pred             eecCCCcEEEEEEeeecccc--eeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecC
Q psy4613          12 GAPIDTDVTLECYVEAYPKS--INYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNS   85 (96)
Q Consensus        12 ~~~~g~~~~l~c~~~~~~~~--~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~   85 (96)
                      ....++.+.|.|.+.+..+.  .+.|.+++...... ............+...+.|.+..-.-  ...|.|.+...
T Consensus        20 e~~~~~~~~l~Clv~~f~P~~i~v~W~~~g~~~~~~-~~~~~~~~~~gt~~~~S~L~v~~~~w--~~~ytC~V~H~   92 (107)
T d1hxmb2          20 ETKLQKAGTYLCLLEKFFPDVIKIHWEEKKSNTILG-SQEGNTMKTNDTYMKFSWLTVPEKSL--DKEHRCIVRHE   92 (107)
T ss_dssp             GGGSSSCEEEEEEEEEESSCCEEEEEEESSSCCCCC-CEECCCEECSSSEEEEEEEEECTGGG--GSCEEEEEEET
T ss_pred             HHccCCcEEEEEEEeEEeCCceEEEEEECCeEccCC-EEccceecCCCeEEEEEEEEEecccC--CCeEEEEEEEC
Confidence            35567889999999985443  68898876544211 11000111122333445565544321  23799999864

>d1b2wh1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.50  E-value=0.00033  Score=31.77  Aligned_cols=69  Identities=16%  Similarity=0.320  Sum_probs=43.6

Q ss_pred             eecCCCcEEEEEEeeeccc--ceeEEeecc--c--eeE---ec-----------ccceEEEEeccccceEEEEEEEccCC
Q psy4613          12 GAPIDTDVTLECYVEAYPK--SINYWVRDQ--G--DMV---IS-----------SERYEVESISRSIFDFKMRLTIKKIT   71 (96)
Q Consensus        12 ~~~~g~~~~l~c~~~~~~~--~~~~w~~~~--~--~~~---~~-----------~~~~~~~~~~~~~~~~~~~l~i~~~~   71 (96)
                      .+++|+++.|.|.+.+...  -.+.|++..  .  ..+   ..           ..|+.+....   ......|.|.+++
T Consensus        11 ~vkpg~sl~LsC~~SG~s~~~y~~~WvRQ~pGkglewv~~i~~~~~~t~y~~s~kgR~tisrD~---s~~t~~L~~~sL~   87 (117)
T d1b2wh1          11 VVQPGRSLKLSCLASGYIFTSSWINWVKQRPGRGLEWIGRIDPSDGEVHYNQDFKDRFTISRDK---SKNTLYLQMNSLR   87 (117)
T ss_dssp             EECTTSCEEEEEECCHHHHTTSEECEEEECTTSCCEEEEEECTTTCCEEECHHHHTTEEEECCT---TTTEEEEEECSCC
T ss_pred             eECCCCCEEEEEEECCCCCcCCccccccCCCCCceeeeeccCCccccccccccceeeEEEEecc---ccceEEeeecccc
Confidence            4789999999999887543  356687632  1  111   00           1233333211   1123568999999


Q ss_pred             CCCCeeEEEEEe
Q psy4613          72 KYDLGSYKCIAK   83 (96)
Q Consensus        72 ~~d~g~y~c~~~   83 (96)
                      .+|.+.|+|...
T Consensus        88 ~eDTAvYYCAr~   99 (117)
T d1b2wh1          88 PEDTAVYYCARG   99 (117)
T ss_dssp             GGGCEEEECCEE
T ss_pred             CCcceEEEEccc
Confidence            999999999754

>d3c2ah1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=97.46  E-value=0.00082  Score=31.09  Aligned_cols=69  Identities=17%  Similarity=0.334  Sum_probs=44.5

Q ss_pred             eecCCCcEEEEEEeeecccc--eeEEeecc--cee--E---e-------------cccceEEEEeccccceEEEEEEEcc
Q psy4613          12 GAPIDTDVTLECYVEAYPKS--INYWVRDQ--GDM--V---I-------------SSERYEVESISRSIFDFKMRLTIKK   69 (96)
Q Consensus        12 ~~~~g~~~~l~c~~~~~~~~--~~~w~~~~--~~~--~---~-------------~~~~~~~~~~~~~~~~~~~~l~i~~   69 (96)
                      .+++|+++.|.|.+.+....  .+.|++..  ..+  .   .             -..|+.+......   ....|.|.+
T Consensus        11 ~vkpg~sl~LsC~~SG~s~s~~~~~WvRQ~PGkglewv~~i~~~~~~~~~~ya~s~kgR~tiS~D~s~---nt~~Lq~~~   87 (131)
T d3c2ah1          11 LVKPGGSLRLTCVASGFTFSDVWLNWVRQAPGKGLEWVGRIKSRTDGGTTDYAASVKGRFTISRDDSK---NTLYLQMNS   87 (131)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECCGGGTCCEEECTTTTTTEEEEEEGGG---TEEEEEECS
T ss_pred             eECCCCCeEEEEEECCCCCcCCcccccccCCCccceecccccccccccchhhccceeEEEEEeccccc---ceeecceec
Confidence            46889999999999875533  67787642  111  1   0             0123344332211   236689999


Q ss_pred             CCCCCCeeEEEEEe
Q psy4613          70 ITKYDLGSYKCIAK   83 (96)
Q Consensus        70 ~~~~d~g~y~c~~~   83 (96)
                      ++.+|.+.|.|...
T Consensus        88 L~~eDTAvYYCAR~  101 (131)
T d3c2ah1          88 LKTEDTAVYSCTTD  101 (131)
T ss_dssp             CCGGGCEEEEEEEE
T ss_pred             cccCCceEEEEecc
Confidence            99999999999754

>d1mjuh2 b.1.1.2 (H:114-230) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.41  E-value=0.0008  Score=29.69  Aligned_cols=72  Identities=15%  Similarity=0.229  Sum_probs=36.9

Q ss_pred             cCCCcEEEEEEeeecccc--eeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCce
Q psy4613          14 PIDTDVTLECYVEAYPKS--INYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEV   89 (96)
Q Consensus        14 ~~g~~~~l~c~~~~~~~~--~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~   89 (96)
                      ..++.+.|.|.+.+..+.  .+.|..++........   .....+..+...+.|.+..-.- +.+.|.|.+.......
T Consensus        18 ~~~~~~~l~Cl~~gf~P~~i~v~W~~~~~~~~~~~~---~~~~~~g~ys~~S~L~v~~~~w-~~~~ytC~V~H~~~~~   91 (102)
T d1mjuh2          18 TSGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTF---PAVLQSDLYTLSSSVTVTSSTW-PSQSITCNVAHPASST   91 (102)
T ss_dssp             ----CEEEEEEEEEEBSSCCEEEEGGGTBCTTEEEC---CCEEETTEEEEEEEEEECTTTT-TTSCCEEEEEEGGGTE
T ss_pred             cCCCcEEEEEEEeeeeCCCeEEEECcCCccCCeEec---ccccCCCCEEEEEEEEEehhHc-CCceEEEEEEECCCCE
Confidence            356789999999985433  6889654321110000   0011122333446666665543 2357999998754443

>d1nfde2 b.1.1.2 (E:108-215) Immunoglobulin light chain lambda constant domain, CL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.38  E-value=1.2e-05  Score=35.85  Aligned_cols=73  Identities=11%  Similarity=0.085  Sum_probs=37.8

Q ss_pred             CCCcEEEEEEeeecccc--eeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCc
Q psy4613          15 IDTDVTLECYVEAYPKS--INYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGE   88 (96)
Q Consensus        15 ~g~~~~l~c~~~~~~~~--~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~   88 (96)
                      .+..+.|.|.+.+..+.  .+.|.+++........ ..........+...+.|.+..-.-.+...|.|.+......
T Consensus        19 ~~~~~~l~C~~~gf~P~~i~v~W~~~g~~~~~~~~-~~~~~~~~~tys~~S~l~v~~~~w~~~~~ytC~V~H~~~~   93 (104)
T d1nfde2          19 RTNKATLVCLVNDFYPGSATVTWKANGATINDGVK-TTKPSKQGQNYMTSSYLSLTADQWKSHNRVSCQVTHEGET   93 (104)
T ss_dssp             HTTEECCCEEEEEEBSSCCEEEEEETTEEECSSCB-CCCCBCSSSCEEEEEBCCEEHHHHHTCSCEEEEEECTTTT
T ss_pred             cCCcEEEEEEEEEeeCCCCEEEEEECCEECCCCEE-eccccCCCceEEEEEEEEEcHHHcCCCCEEEEEEEECCCc
Confidence            35668899999985433  7889987655431111 0000111112222333444332222334799999876543

>d1c5ch2 b.1.1.2 (H:114-230) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.36  E-value=0.00095  Score=29.44  Aligned_cols=71  Identities=13%  Similarity=0.231  Sum_probs=38.3

Q ss_pred             CCCcEEEEEEeeecccc--eeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCc
Q psy4613          15 IDTDVTLECYVEAYPKS--INYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGE   88 (96)
Q Consensus        15 ~g~~~~l~c~~~~~~~~--~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~   88 (96)
                      .+..+.|.|.+.+..+.  .+.|..++......  ........+..+...+.|.+..-.- ....|.|.+......
T Consensus        19 ~~~~~tl~Cl~~~f~P~~i~v~W~~~~~~~~~~--t~~~~~~~~gtys~~S~L~v~~~~w-~~~~ytC~V~H~~~~   91 (103)
T d1c5ch2          19 SGGTAALGCLVKDYFPEPVTVSWNSGALTSGVH--TFPAVLQSSGLYSLSSVVTVPSSSL-GTQTYICNVNHKPSN   91 (103)
T ss_dssp             ETTEEEEEEEEEEEBSSCCEEEEGGGTBCTTEE--ECCCEECTTSCEEEEEEEEEEGGGG-GTCCCEEEEEEGGGT
T ss_pred             CCCeEEEEEEEEeEeCCCeEEEECcCCCCCCEE--ECCCeECCCCCEEEEEEEEECcccc-CCCeEEEEEEeCCCC
Confidence            46779999999885433  68896554221100  0111112222343456666654332 234699999875443

>d1hyrc1 b.1.1.2 (C:181-274) Class I MHC homolog, alpha-3 domain {Human (Homo sapiens), Mic-a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC homolog, alpha-3 domain
species: Human (Homo sapiens), Mic-a [TaxId: 9606]

Probab=97.29  E-value=0.0011  Score=28.75  Aligned_cols=68  Identities=12%  Similarity=0.263  Sum_probs=37.5

Q ss_pred             CCCcEEEEEEeeecccc--eeEEeeccceeEecccce-EEEEeccccceEEEEEEEccCCCCCCeeEEEEEecC
Q psy4613          15 IDTDVTLECYVEAYPKS--INYWVRDQGDMVISSERY-EVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNS   85 (96)
Q Consensus        15 ~g~~~~l~c~~~~~~~~--~~~w~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~   85 (96)
                      ..+.+.|.|.+.+.-+.  .+.|.+++.......... .........+...+.|.+..   .+...|.|.+...
T Consensus        14 ~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~~~~ty~~~s~l~v~~---~~~~~ytC~V~H~   84 (94)
T d1hyrc1          14 SEGNITVTCRASGFYPWNITLSWRQDGVSLSHDTQQWGDVLPDGNGTYQTWVATRICQ---GEEQRFTCYMEHS   84 (94)
T ss_dssp             SSSEEEEEEEEEEEBSSCCEEEEEETTEECCSTTSEECCCEECSSSCEEEEEEEEEET---TCGGGEEEEEEET
T ss_pred             CCCCEEEEEEEEEEECCCcEEEEeECCeEcCCCeEEcCceEECCCCcEEEEEEEEEcC---CCCCEEEEEEEEC
Confidence            45678999999985433  688998865443111110 11112222343445555543   2334799998764

>d1dn0b2 b.1.1.2 (B:121-225) Immunoglobulin heavy chain mu constant domain 1, CH1-mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain mu constant domain 1, CH1-mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.09  E-value=0.0021  Score=28.41  Aligned_cols=80  Identities=10%  Similarity=0.195  Sum_probs=42.1

Q ss_pred             ecCCCcEEEEEEeeecc-cc-eeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCC--CCCeeEEEEEecCCCc
Q psy4613          13 APIDTDVTLECYVEAYP-KS-INYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITK--YDLGSYKCIAKNSLGE   88 (96)
Q Consensus        13 ~~~g~~~~l~c~~~~~~-~~-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~--~d~g~y~c~~~~~~g~   88 (96)
                      ......+.|.|.+.+.. .. .+.|..++.......... ........+...+.|.+....-  .....|.|.+....+.
T Consensus        18 ~~~~~~~~l~Cl~~gF~P~~i~v~W~~~~~~~~~~~~~~-~~~~~~gtys~~S~L~v~~~eW~~~~~~~ytC~V~H~~~~   96 (105)
T d1dn0b2          18 PSDTSSVAVGCLAQDFLPDSITFSWKYKNNSDISSTRGF-PSVLRGGKYAATSQVLLPSKDVMAGTDEHVVCKVQHPNGN   96 (105)
T ss_dssp             ---CCSEEEEEEEEEEBSSCCEEEEEETTSCEECCEEEC-CCEEETTEEEEEEEEEECTTCC---CCCEEEEEEECTTCC
T ss_pred             cCCCCceEEEEEEecccCCcEEEEEEECCccccCCEEcc-eEEccCCCEEEEEEEEEcHHHhccCCCCEEEEEEEECCCC
Confidence            34467899999999854 33 788988765432110000 0011112333445566654432  2234799999987665


Q ss_pred             eEEEE
Q psy4613          89 VESSI   93 (96)
Q Consensus        89 ~~~~~   93 (96)
                      ....+
T Consensus        97 ~~~~v  101 (105)
T d1dn0b2          97 KEKNV  101 (105)
T ss_dssp             EEEEE
T ss_pred             EEeEE
Confidence            54433

>d1hdma1 b.1.1.2 (A:94-196) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=97.09  E-value=0.0022  Score=28.38  Aligned_cols=70  Identities=14%  Similarity=0.152  Sum_probs=43.0

Q ss_pred             ecCCCcEEEEEEeeecccc--eeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCC
Q psy4613          13 APIDTDVTLECYVEAYPKS--INYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSL   86 (96)
Q Consensus        13 ~~~g~~~~l~c~~~~~~~~--~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~   86 (96)
                      +..|+..+|.|.+.+.-+.  .+.|.+++.... ...........+..+...+.|.+..-   +...|.|.+....
T Consensus        15 ~e~~~~~tL~C~v~gF~P~~i~V~W~~ng~~~~-~~~~~~~~~~~dgty~~~S~L~v~~~---~~~~ytC~V~H~~   86 (103)
T d1hdma1          15 LEFGKPNTLVCFVSNLFPPMLTVNWHDHSVPVE-GFGPTFVSAVDGLSFQAFSYLNFTPE---PSDIFSCIVTHEP   86 (103)
T ss_dssp             CCTTSCEEEEEEEEEEBSSCEEEEEEETTEECS-SCCCEEEEEETTTEEEEEEEEEECCC---TTCCEEEEEEETT
T ss_pred             hhcCCCeEEEEEEeeEECCCCEEEEEECCeecC-CcEeceEEeCCCCcEEEEEEEEEecC---CCCEEEEEEEeCC
Confidence            3467788999999985443  688988865432 11222233333445555666666543   3347999998753

>d1i1ca1 b.1.1.2 (A:239-341) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.08  E-value=0.0013  Score=29.00  Aligned_cols=72  Identities=15%  Similarity=0.146  Sum_probs=37.7

Q ss_pred             cCCCcEEEEEEeeec-cc---ceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCC
Q psy4613          14 PIDTDVTLECYVEAY-PK---SINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSL   86 (96)
Q Consensus        14 ~~g~~~~l~c~~~~~-~~---~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~   86 (96)
                      ..+..+.+.|.+.+. |.   -.+.|.+++...... ............+...+.|.+..-.=.....|.|.+....
T Consensus        14 ~~~~t~~l~Clv~~f~p~~~~v~v~W~~~g~~~~~~-~~~~~~~~~~gtys~~S~L~v~~~~W~~g~~~tC~V~H~~   89 (103)
T d1i1ca1          14 GGGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTA-QTHAPEKQSNSTLRSVSELPIVERDWLNGKTFKCKVNSGA   89 (103)
T ss_dssp             TSSSCCEEEEEEEEECTTCCCCEEEEEESSCEECCC-EECCCEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECSS
T ss_pred             ccCCCcEEEEEEEeeECCCCCEEEEEEECCccccCC-EECCcEECCCCCEEEEEEEEECHHHhcCCCEEEEEEEeCC
Confidence            456778999999874 33   267798876554211 1011111222233344555443321112236999998753

>d1igtb3 b.1.1.2 (B:236-361) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Mouse (Mus musculus), gamma2 [TaxId: 10090]

Probab=96.98  E-value=0.0021  Score=29.09  Aligned_cols=72  Identities=14%  Similarity=0.137  Sum_probs=39.3

Q ss_pred             cCCCcEEEEEEeeec-cc---ceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCC
Q psy4613          14 PIDTDVTLECYVEAY-PK---SINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSL   86 (96)
Q Consensus        14 ~~g~~~~l~c~~~~~-~~---~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~   86 (96)
                      ..+..+.|.|.+.+. |.   -.+.|..++...... .........+..+...+.|.+..-.=.....|.|.+....
T Consensus        30 ~~~~~~~L~C~v~gf~P~~~~v~v~W~~~g~~~~~~-~~~~~~~~~~gt~s~~S~L~v~~~eW~~g~~ytC~V~H~~  105 (119)
T d1igtb3          30 MISLSPIVTCVVVDVSEDDPDVQISWFVNNVEVHTA-QTQTHREDYNSTLRVVSALPIQHQDWMSGKEFKCKVNNKD  105 (119)
T ss_dssp             CTTSCCEEEEEEEEECTTCCCCEEEEEETTEECSST-TCBCCEEECSSSEEEEEEEECCHHHHHTTCEEEEEEECTT
T ss_pred             ccCCceEEEEEeecccCCCCcEEEEEeeCCcccCCC-EECccEECCCCcEEEEEEEEEeHHHhCCCCeEEEEEEECC
Confidence            457889999999885 32   357798876544211 1111112222333344555544322122347999998753

>d1l6xa1 b.1.1.2 (A:237-341) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.96  E-value=0.0018  Score=28.58  Aligned_cols=74  Identities=18%  Similarity=0.151  Sum_probs=38.7

Q ss_pred             ecCCCcEEEEEEeeeccc----ceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCC
Q psy4613          13 APIDTDVTLECYVEAYPK----SINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLG   87 (96)
Q Consensus        13 ~~~g~~~~l~c~~~~~~~----~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g   87 (96)
                      ...++.+.|.|.+.+..+    -.+.|.+++...... .........+..+...+.|.+..-.-.....|.|.+.....
T Consensus        15 ~~~~~~~~L~C~~~gf~P~~~~v~~~W~~~~~~~~~~-~~~~~~~~~~gtys~~S~L~v~~~~W~~g~~ytC~V~H~~l   92 (105)
T d1l6xa1          15 LMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNA-KTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKAL   92 (105)
T ss_dssp             HCTTSCCEEEEEEEEECSSSCCCEEEEEETTEEECCC-EECCCEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTTS
T ss_pred             hccCCceEEEEEEEEEeCCCCeEEEEEeeCCeECCCc-EECCcEECCCCcEEEEEEEEEcHHHcCCCCEEEEEEEeCCC
Confidence            446788999999988533    245677765443211 11111112222333445555443321223379999987543

>d1ogae2 b.1.1.2 (E:119-245) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=96.87  E-value=0.00093  Score=30.64  Aligned_cols=73  Identities=12%  Similarity=0.201  Sum_probs=38.7

Q ss_pred             ecCCCcEEEEEEeeecccc--eeEEeeccceeEec---ccceEEE--EeccccceEEEEEEEccCCCCCCe-eEEEEEec
Q psy4613          13 APIDTDVTLECYVEAYPKS--INYWVRDQGDMVIS---SERYEVE--SISRSIFDFKMRLTIKKITKYDLG-SYKCIAKN   84 (96)
Q Consensus        13 ~~~g~~~~l~c~~~~~~~~--~~~w~~~~~~~~~~---~~~~~~~--~~~~~~~~~~~~l~i~~~~~~d~g-~y~c~~~~   84 (96)
                      ...+..++|.|.+.+..+.  .+.|.+++......   .......  ...+..|...+.|.+..-.=.+.| .|.|.+..
T Consensus        17 ~~~~~~~tL~C~v~gf~P~~i~v~W~~~g~~~~~~~~t~~~~~~~~~~~~d~tys~sS~L~v~~~~W~~~g~~ytC~V~H   96 (127)
T d1ogae2          17 ISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVSTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQF   96 (127)
T ss_dssp             HHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECSSEEECSSCEESCTTSTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEE
T ss_pred             hccCCcEEEEEEEEeccCCCeEEEEEECCEEccCcEEecceeeeecccCCCCeEEEEEEEEECHHHhCCCCCEEEEEEEE
Confidence            3456778999999985433  68899876543210   0000000  001112334456666543323333 79999875


Q ss_pred             C
Q psy4613          85 S   85 (96)
Q Consensus        85 ~   85 (96)
                      .
T Consensus        97 ~   97 (127)
T d1ogae2          97 Y   97 (127)
T ss_dssp             C
T ss_pred             C
Confidence            3

>d1pfca_ b.1.1.2 (A:) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=96.50  E-value=0.0015  Score=29.26  Aligned_cols=66  Identities=14%  Similarity=0.163  Sum_probs=34.5

Q ss_pred             CCCcEEEEEEeeecccc--eeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCC---CeeEEEEEecCC
Q psy4613          15 IDTDVTLECYVEAYPKS--INYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYD---LGSYKCIAKNSL   86 (96)
Q Consensus        15 ~g~~~~l~c~~~~~~~~--~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d---~g~y~c~~~~~~   86 (96)
                      .+..++|.|.+.+..+.  .+.|..++.....   ........+..+...+.|.   +...+   ...|.|.+....
T Consensus        26 ~~~~~tL~C~v~gf~P~~i~v~W~~~~~~~~~---~~~~~~~~dgtys~~S~L~---v~~~~W~~~~~ytC~V~H~~   96 (111)
T d1pfca_          26 SKKKVSLTCMITGFYPADINVEWDSSEPSDYK---NTPPVFDTDGSFFLYSRLK---VDTDAWNNGESFTCSVMHEA   96 (111)
T ss_dssp             CTTSCCEEEEEESCCSSCCEEESSSCCTTTEE---EEEEECCSSCCCEEEEEEC---CCSSCCHHHHCCEEEEEETT
T ss_pred             cCCceEEEEEEEeeECCCcEEEEeeCCCCCcE---EcccEECCCCcEEEEEEEE---ECHHHhCCCCEEEEEEEeCC
Confidence            35678899999985433  6889766432110   0111111222332333343   33333   237999998753

>d2fbjh2 b.1.1.2 (H:119-220) Immunoglobulin heavy chain alpha constant domain 1, CH1-alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 1, CH1-alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.17  E-value=0.013  Score=25.59  Aligned_cols=72  Identities=17%  Similarity=0.306  Sum_probs=38.8

Q ss_pred             cCCCcEEEEEEeeec-ccc--eeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCC
Q psy4613          14 PIDTDVTLECYVEAY-PKS--INYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLG   87 (96)
Q Consensus        14 ~~g~~~~l~c~~~~~-~~~--~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g   87 (96)
                      ..++.+.|.|.+.+. |..  .+.|.+++......  ...........+...+.|.+....-.....|.|.+.....
T Consensus        17 ~~~~~v~L~Clv~gF~P~~~i~v~W~~~~~~~~~~--~~~~~~~~~gtys~~S~L~v~~~~W~~~~~ytC~V~H~s~   91 (102)
T d2fbjh2          17 LSSDPVIIGCLIHDYFPSGTMNVTWGKSGKDITTV--NFPPALASGGRYTMSNQLTLPAVECPEGESVKCSVQHDSN   91 (102)
T ss_dssp             SCCSSEEEEEEEEEEBSCCCEEEEESCCCSSCEEE--ECCCEECSSSCEEEEEEEEECGGGSCTTCEEEEEEEETTS
T ss_pred             cCCCcEEEEEEEEcccCCCcEEEEEccCCCcCcee--EeeeEecCCCCEEEEEEEEEeHHHccCCCEEEEEEEECCC
Confidence            457789999999995 443  34565554332211  0111112222333456666665543334479999987543

>d1jbja2 b.1.1.4 (A:1-100) CD3 epsilon chain ectodomain fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 epsilon chain ectodomain fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.16  E-value=0.013  Score=25.43  Aligned_cols=54  Identities=19%  Similarity=0.399  Sum_probs=33.8

Q ss_pred             ecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCC-CCCCeeEEEEEe
Q psy4613          13 APIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKIT-KYDLGSYKCIAK   83 (96)
Q Consensus        13 ~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~g~y~c~~~   83 (96)
                      ..-|.++.|.|+..+.  ..+.|.++...+.....+               .|.+..-. .+++|-|.|...
T Consensus        11 SISGTtV~LTCP~~~~--~~I~Wkkn~~~i~g~~~~---------------~L~L~~FSE~e~SGyY~C~~~   65 (100)
T d1jbja2          11 SISGTSVELTCPLDSD--ENLKWEKNGQELPQKHDK---------------HLVLQDFSEVEDSGYYVCYTP   65 (100)
T ss_dssp             EEETTEEEEECSSCCC--TTCEEEETTEEECSCCCS---------------EEEEESCCTTTSCEEEEEECS
T ss_pred             EEeCCEEEEECCCCCC--CceEEeeccccCCCCCCc---------------EEEEccccccccCcceEEecC
Confidence            4558999999986653  468998875444322121               23444433 468899999643

>d1u58a1 b.1.1.2 (A:145-242) Immunomodulatory protein m144, alpha-3 domain {Murine cytomegalovirus [TaxId: 10366]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunomodulatory protein m144, alpha-3 domain
species: Murine cytomegalovirus [TaxId: 10366]

Probab=95.93  E-value=0.018  Score=25.07  Aligned_cols=67  Identities=15%  Similarity=0.291  Sum_probs=37.6

Q ss_pred             CCcEEEEEEeeecccc--eeEEeeccceeEe---ccc-ceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecC
Q psy4613          16 DTDVTLECYVEAYPKS--INYWVRDQGDMVI---SSE-RYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNS   85 (96)
Q Consensus        16 g~~~~l~c~~~~~~~~--~~~w~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~   85 (96)
                      ...++|.|.+.+..+.  .+.|.+++.....   ... ...........+...+.|.+..-   +...|.|.+...
T Consensus        14 ~~~vtL~C~~~gFyP~~I~v~W~~ng~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~---~~~~ytC~V~H~   86 (98)
T d1u58a1          14 EGGMRLRCFARDYYPADLEIRWWKDDGGGGALPQTSKQHHDPLPSGNGLYQKHIDVYVDGG---LEHVYSCRVKGI   86 (98)
T ss_dssp             SSCEEEEEEEEEEBSSCEEEEEEEECSSSCEEECCCSCCCCCEECSSSCEEEEEEEEECTT---CGGGEEEEEEEG
T ss_pred             CCcEEEEEEEEEEcCCCCEEEEEECCccccCcEeeeeEEcceeeCCCCEEEEEEEEEECCC---CCCEEEEEEEeC
Confidence            4578999999986544  6789887543321   110 01111222334445566666443   335799998753

>d1xiwa_ b.1.1.4 (A:) CD3 epsilon chain ectodomain fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 epsilon chain ectodomain fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.00  E-value=0.01  Score=25.40  Aligned_cols=62  Identities=19%  Similarity=0.304  Sum_probs=36.4

Q ss_pred             ecCCCcEEEEEEeeecccceeEEeeccceeEeccc-ceEEEEeccccceEEEEEEEccCCC-CCCeeEEEEEec
Q psy4613          13 APIDTDVTLECYVEAYPKSINYWVRDQGDMVISSE-RYEVESISRSIFDFKMRLTIKKITK-YDLGSYKCIAKN   84 (96)
Q Consensus        13 ~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~i~~~~~-~d~g~y~c~~~~   84 (96)
                      ..-|.++.|.|+..  ....+.|.+++.......+ .....        ....|.+..-.. .++|-|.|.+..
T Consensus         7 sISGTtV~LTCP~~--~~~~i~W~~n~~~~~~~~~~~~~~~--------~~~~l~L~dfSe~e~sGyY~C~~~~   70 (91)
T d1xiwa_           7 SISGTTVILTCPQY--PGSEILWQHNDKNIGGDEDDKNIGS--------DEDHLSLKEFSELEQSGYYVCYPRG   70 (91)
T ss_dssp             EEETTEEEEECSSC--TTSCEEEEETTEEESSSCSCTTEEE--------ETTEEEETTCCHHHHCEEEEEEETT
T ss_pred             EEeCCEEEEECCCC--CCCceeeeeccccccCCCccccccc--------ccceEEecccCccccCceEEEEcCC
Confidence            34588999999743  4467999887654432111 11111        112355566554 578999998754

>d3d85d1 b.1.1.4 (D:1-87) The p40 domain of interleukin-12 (IL-12 beta chain), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: The p40 domain of interleukin-12 (IL-12 beta chain), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.53  E-value=0.051  Score=23.02  Aligned_cols=48  Identities=29%  Similarity=0.369  Sum_probs=26.1

Q ss_pred             CCcEEEEEEeeecccceeEEeeccce-eEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEE
Q psy4613          16 DTDVTLECYVEAYPKSINYWVRDQGD-MVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCI   81 (96)
Q Consensus        16 g~~~~l~c~~~~~~~~~~~w~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~   81 (96)
                      +..+.+.|...  ....+.|.+++.. +...+                .++++.--...|+|.|+|+
T Consensus        21 ~~~V~L~C~t~--eE~~I~W~kd~~se~~~~G----------------ntltV~VkE~~~aGnYTCh   69 (87)
T d3d85d1          21 GEMVVLTCDTP--EEDGITWTLDQSSEVLGSG----------------KTLTIQVKEFGDAGQYTCH   69 (87)
T ss_dssp             CEEEEEECSSS--CCSSCEEEETTCCCCCEES----------------SEEEEEECSGGGCEEEEEE
T ss_pred             ccEEEEecCCC--cccccEEeeCCccccccCC----------------CEEEEEEEeccCCcceeEe
Confidence            45677888422  1236899887433 11111                2233332233588999997

>d1xiwb_ b.1.1.4 (B:) CD3 delta chain ectodomain fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 delta chain ectodomain fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.05  E-value=0.026  Score=23.19  Aligned_cols=47  Identities=23%  Similarity=0.406  Sum_probs=26.2

Q ss_pred             CCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEe
Q psy4613          16 DTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAK   83 (96)
Q Consensus        16 g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~   83 (96)
                      -.++.+.|.      ..+.|++.+........               .++.+-+.-..-.|.|.|...
T Consensus         9 e~~V~L~Cn------~si~W~k~~~~~~~~~~---------------k~lnLG~~~~DPRG~Y~C~~~   55 (74)
T d1xiwb_           9 EDRVFVNCN------TSITWVEGTVGTLLSDI---------------TRLDLGKRILDPRGIYRCNGT   55 (74)
T ss_dssp             TTEEEEECS------SCEEEEEECCCEEEGGG---------------TEEEEEEGGGCCEEEEEEC--
T ss_pred             CCeEEEEcc------CeeEEecCCcccccCCc---------------cEeecCCcccCCCcceEeCCc
Confidence            347888884      46889886533322211               233444444555789999754

>d1ow0a1 b.1.1.2 (A:242-342) Immunoglobulin heavy chain alpha constant domain 2, CH2-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 2, CH2-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.03  E-value=0.0016  Score=28.61  Aligned_cols=29  Identities=14%  Similarity=0.401  Sum_probs=21.1

Q ss_pred             ecCCCcEEEEEEeeec--cc-ceeEEeeccce
Q psy4613          13 APIDTDVTLECYVEAY--PK-SINYWVRDQGD   41 (96)
Q Consensus        13 ~~~g~~~~l~c~~~~~--~~-~~~~w~~~~~~   41 (96)
                      ...++.++|.|.+.+.  |. -.+.|..++..
T Consensus        15 ~~~~~~~tL~C~v~~f~~p~~i~v~W~~~~~~   46 (101)
T d1ow0a1          15 LLLGSEANLTCTLTGLRDASGVTFTWTPSSGK   46 (101)
T ss_dssp             HHHCSSCCCEEEETTCCSCCCCCCCBSSCSSC
T ss_pred             HccCCCeEEEEEEeCCCCCcceEEEEEECCce
Confidence            4567899999999875  33 26889876543

>d1sy6a1 b.1.1.4 (A:1-81) CD3 gamma chain ectodomain fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 gamma chain ectodomain fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.27  E-value=0.11  Score=21.72  Aligned_cols=53  Identities=23%  Similarity=0.296  Sum_probs=31.6

Q ss_pred             CCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEe
Q psy4613          15 IDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAK   83 (96)
Q Consensus        15 ~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~   83 (96)
                      ...++.|.|.   .....+.|++++........             ...++.+-+.-..-.|.|.|...
T Consensus        16 ~dg~V~L~Cn---~~~k~i~W~kdg~~i~~~~~-------------~~ktlnLG~~~~DPRG~Y~C~~~   68 (81)
T d1sy6a1          16 EDGSVLLTCD---AEAKNITWFKDGKMIGFLTE-------------DKKKWNLGSNAKDPRGMYQCKGS   68 (81)
T ss_dssp             SSSEEEEEEC---SCSSEEEEEETTEEEEEEES-------------SCCCEEEEEGGGCCEEEEEEESS
T ss_pred             cCCeEEEEeC---CCCcEEEEecCCeEeecccC-------------CcceeecCCcccCCCcceEcCCC
Confidence            3567888994   34448899998654432111             11344455555556789999653

>d1jbja1 b.1.1.4 (A:101-186) CD3 gamma chain ectodomain fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 gamma chain ectodomain fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.40  E-value=0.16  Score=21.43  Aligned_cols=53  Identities=21%  Similarity=0.350  Sum_probs=30.9

Q ss_pred             CCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEec
Q psy4613          16 DTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKN   84 (96)
Q Consensus        16 g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~   84 (96)
                      -.++.|.|..   ....+.|++++........             ...++.+-+.-..-.|.|.|....
T Consensus        22 dGsV~L~Cn~---~~k~i~W~kdg~~i~~~~~-------------~~ktlnLG~~~~DPRGiY~C~g~~   74 (86)
T d1jbja1          22 DGSVLLTCGL---TDKTIKWLKDGSIISPLNA-------------TKNTWNLGNNAKDPRGTYQCQGAK   74 (86)
T ss_dssp             SCEEEEECSS---SCSCEEEEETTEECCCSSC-------------CSSCCEEEETTSCCEEEEEEEESS
T ss_pred             CCeEEEEeCC---CCcEEEEecCCceeccccc-------------ccceeecCCcccCCCcceEcCCCc
Confidence            4568888842   3347899998655432111             112344455555567899996543

>d1igyb3 b.1.1.2 (B:236-361) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.28  E-value=0.0023  Score=28.77  Aligned_cols=29  Identities=21%  Similarity=0.297  Sum_probs=19.7

Q ss_pred             ecCCCcEEEEEEeeecccc----eeEEeeccce
Q psy4613          13 APIDTDVTLECYVEAYPKS----INYWVRDQGD   41 (96)
Q Consensus        13 ~~~g~~~~l~c~~~~~~~~----~~~w~~~~~~   41 (96)
                      ...++.++|.|.+.+..+.    .+.|.+++..
T Consensus        26 l~~~~~~tL~C~v~gf~P~~~~v~~~W~~~~~~   58 (116)
T d1igyb3          26 LLITVTPKVTCVVVDISKDDPEVQFSWFVDNVE   58 (116)
T ss_dssp             HSTTSCCEEEEEECCCCSSCCCCCBCBBSSSCC
T ss_pred             cccCCCcEEEEEEecEeCCCCEEEEEECcCCeE
Confidence            4568889999999885432    3457766543

>d1hxma2 b.1.1.2 (A:121-206) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=88.29  E-value=0.46  Score=19.89  Aligned_cols=62  Identities=10%  Similarity=0.063  Sum_probs=33.1

Q ss_pred             CCcEEEEEEeeecccc--eeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecC
Q psy4613          16 DTDVTLECYVEAYPKS--INYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNS   85 (96)
Q Consensus        16 g~~~~l~c~~~~~~~~--~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~   85 (96)
                      ...++|.|.+.+.-+.  .+.|..++.... . .... .......|...+.+   .....|  .|.|.+...
T Consensus        13 ~~~~tl~Cl~~gF~P~~i~v~W~~~g~~~~-~-~~~~-~~~~~gtys~~s~~---~~~~~~--~yTC~V~H~   76 (86)
T d1hxma2          13 KNGTNVACLVKEFYPKDIRINLVSSKKITE-F-DPAI-VISPSGKYNAVKLG---KYEDSN--SVTCSVQHD   76 (86)
T ss_dssp             EETTEEEEEEESCBSSCCEEEEECSSEEEE-C-CCEE-EECTTSSEEEEEEE---EETTTT--TCEEEEEET
T ss_pred             CCCCEEEEEEeeEECCCCEEEEEECCEEcc-C-cEEe-eeccCCcEEEEEEE---ecCCCC--EEEEEEEEC
Confidence            3556899999986544  577987754332 1 1111 12222333222333   233333  699998864

>d1i1ra1 b.1.2.1 (A:2-101) Cytokine receptor gp130 cytokine-binding domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Cytokine receptor gp130 cytokine-binding domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.23  E-value=1.5  Score=19.08  Aligned_cols=64  Identities=13%  Similarity=0.258  Sum_probs=40.8

Q ss_pred             ceeeecCCCcEEEEEEeeec-------ccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEE
Q psy4613           9 QLVGAPIDTDVTLECYVEAY-------PKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCI   81 (96)
Q Consensus         9 ~~~~~~~g~~~~l~c~~~~~-------~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~   81 (96)
                      ..-.+..|+.++..|.....       ..+.+.|..++...+  .+.++....      ....+++.++.....- ..|.
T Consensus        11 ~~Pvv~lGS~~TAsCtI~~~c~~~~~~~A~~I~Wkl~~~~~P--~~qy~~ln~------T~~Svtl~~l~~~~a~-L~C~   81 (100)
T d1i1ra1          11 ESPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIP--KEQYTIINR------TASSVTFTDIASLNIQ-LTCN   81 (100)
T ss_dssp             SSCEEETTCCEEEEEEECHHHHHHHTCCGGGEEEEETTEECC--GGGCEEEET------TEEEEEECSCCCSEEE-EEEE
T ss_pred             CCCeEECCCCEEEEEEECchhcCccCCCcceEEEEECCEECC--chheEccCC------cEEEEEEccccCCcce-eEEE
Confidence            34457889999999998632       335899988865543  344544432      2355788887765443 4453