Psyllid ID: psy4626

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540--
Protein Sequence
MPGIMALRKRAGDDKPLKNARIVGCTHINAQTAAGKLTVPAMNVNDSVTKTKFDNLYMCRESIIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIVLLAEGRLVNLSCSSLPSFVVSITACTQALALIELFNAPSGRYKSDVYLLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYYSMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIVLLAEGRLVNLSCSSLPSFVVSITACTQRDKSSLIPCYHLRFASNLAKYLLNSLTSSYTGLPVFAWRGETEEDFWWCIDKCVNSWQPNMILDDGGDATHWMLKKYPTMFKAIKGIVEESLTGVHRLYQLSKAGKLTVPAMNVNDSVTKTKFDNLYMCRESIIDR
Secondary Structure (PSIPRED)
cccHHHHHHHHccccccccccHHHHHHHHHHHHcccccccEEEcccccccccccccccccHHHHHHHHHHHcEEEcccEEEEEccccccHHHHHHHcccccEEEEEEcccHHHHHHHccccEEEcHHHHHccccEEEEcccccccccHHHHHccccccEEEccccccccccccccccccccEEEccccccEEEcccccEEEEEEcccccccccccccccccccHHHHHHHHHHHHHHcccccccccEEEccHHHHHHHHHHccccccEEcccccHHHHHHcccccccccccccEEEcccccccHHHHHccccEEEEcccccccccHHHHHccccccEEEccccccccccccccccccccEEEccccccEEEcccccEEEEEEcccccccccccccccccccHHHHHHHHHHHcccccccccccHHHHHHcccccccccccEEEcccccHHHHHHHHHHHHccccccEEEcccHHHHHHHHHHcHHHHHccccccccHHHHHHHHHHHHHcccccccEEEccccHHHHccccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHcccccccccEEEHHHHHHHHHHccccccEEEEccccHHHHccHHHHHHHHHHHHHHHHHHcccccccEEEEEcccHHHHHHHHHHHHcccEEEEEcccHHHHHHHHHcccEEccHHHHcccccEEEEcccccccEcHHHHccccccEEEEEcccccccEcHHHHHHHccEEEEEEccEEEEEcccccEEEEEHHHccHHHHccccccEEEccccccHEEEEEEHHHccccHcccEEEcccHHHHHHHHHHHHcccccccccccHHHHHHHcEEcccHHHHHHHHHcccEEccHHHHcccccEEEEcccccccEcHHHHccccccEEEEEcccccccEcHHHHHHHccEEEEEEccEEEEEcccccEEEEEHHHccHHHHccccccEEEEEEEEccccccEEEEEcccHHHHHccEEEcccccccccccEEEEEccccHHHHHHHHHHHHccccccEEEEcccHHHHHHHHHcHHHHHHccEEEEccHHHHHHHHHHHHccccccEEEEccccHHHHccHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
MPGIMALRkragddkplknarivgcthinaqtaagkltvpamnvndsvtktkfdnLYMCRESIIDSLKrstdvmfggkQVVLCGygevgkgccqslkglgcvIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHMdkmkngcvvcnmghsnteidvnslrtpdltwEKVRSQVDhviwpdgkRIVLLAEGrlvnlscsslpSFVVSITACTQALALIELfnapsgryksdvyllpkKMDEYVASLHLPTFDAHLTELSDEQAKYMglnkagpfkpsyysmdgfsvVKLNEVIRTVDIVVTATGNKNVVTREHMdkmkngcvvcnmghsnteidvnslrtpdltwEKVRSQVDhviwpdgkRIVLLAEGrlvnlscsslpSFVVSITActqrdksslipcyhlRFASNLAKYLLNSLtssytglpvfawrgeteeDFWWCIDKcvnswqpnmilddggdaTHWMLKKYPTMFKAIKGIVEESLTGVHRLYQLskagkltvpamnvndsvtktkfdnLYMCRESIIDR
Flexible Loop (DISEMBL)
mpgimalrkragddkplknARIVGCTHInaqtaagkltvpamnvndsvtktkfdnlYMCRESIIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTatgnknvvtrehmdkMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIVLLAEGRLVNLSCSSLPSFVVSITACTQALALIElfnapsgryKSDVYLLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYYSMDGFSVVKLNEVIRTVDIVVTatgnknvvtrehmdkMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIVLLAEGRLVNLSCSSLPSFVVSITACTQRDKSSLIPCYHLRFASNLAKYLLNSLTSSYTGLPVFAWRGETEEDFWWCIDKCVNSWQPNMILDDGGDATHWMLKKYPTMFKAIKGIVEESLTGVHRLYQLSkagkltvpamnvndsvtktkfdnlymcresiidr
Low Complexity Region (SEG)
MPGIMALRKRAGDDKPLKNARIVGCTHINAQTAAGKLTVPAMNVNDSVTKTKFDNLYMCRESIIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIVLLAEGRLVNLSCSSLPSFVVSITACTQALALIELFNAPSGRYKSDVYLLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYYSMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIVLLAEGRLVNLSCSSLPSFVVSITACTQRDKSSLIPCYHLRFASNLAKYLLNSLTSSYTGLPVFAWRGETEEDFWWCIDKCVNSWQPNMILDDGGDATHWMLKKYPTMFKAIKGIVEESLTGVHRLYQLSKAGKLTVPAMNVNDSVTKTKFDNLYMCRESIIDR
Disordered region (IsUnstruct)
******************NARIVGCTHINAQTAAGKLTVPAMNVNDSVTKTKFDNLYMCRESIIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIVLLAEGRLVNLSCSSLPSFVVSITACTQALALIELFNAPSGRYKSDVYLLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYYSMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIVLLAEGRLVNLSCSSLPSFVVSITACTQRDKSSLIPCYHLRFASNLAKYLLNSLTSSYTGLPVFAWRGETEEDFWWCIDKCVNSWQPNMILDDGGDATHWMLKKYPTMFKAIKGIVEESLTGVHRLYQLSKAGKLTVPAMNVNDSVTKTKFDNLYMCRES****
Disordered Region (DISOPRED)
*PGI*A*RKRAGDDKPLKNARIVGCTHINAQTAAGKLTVPAMNVNDSVTKTKFDNLYMCRESIIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIVLLAEGRLVNLSCSSLPSFVVSITACTQALALIELFNAPSGRYKSDVYLLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYYSMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIVLLAEGRLVNLSCSSLPSFVVSITACTQRDKSSLIPCYHLRFASNLAKYLLNSLTSSYTGLPVFAWRGETEEDFWWCIDKCVNSWQPNMILDDGGDATHWMLKKYPTMFKAIKGIVEESLTGVHRLYQLSKAGKLTVPAMNVNDSVTKTKFDNLYMCRESII**
Disordered Region (DISEMBL)
MPGIMALRKRAGDDKPLKNARIVGCTHINAQTAAGKLTVPAMNVNDSVTKTKFDNLYMCRESIIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIVLLAEGRLVNLSCSSLPSFVVSITACTQALALIELFNAPSGRYKSDVYLLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYYSMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIVLLAEGRLVNLSCSSLPSFVVSITACTQRDKSSLIPCYHLRFASNLAKYLLNSLTSSYTGLPVFAWRGETEEDFWWCIDKCVNSWQPNMILDDGGDATHWMLKKYPTMFKAIKGIVEESLTGVHRLYQLSKAGKLTVPAMNVNDSVTKTKFDNLYMCRESIIDR
Disordered Region (DISPRO)
MPGIMALRKRAGDDKPLKNARIVGCTHINAQTAAGKLTVPAMNVNDSVTKTKFDNLYMCRESIIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIVLLAEGRLVNLSCSSLPSFVVSITACTQALALIELFNAPSGRYKSDVYLLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYYSMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIVLLAEGRLVNLSCSSLPSFVVSITACTQRDKSSLIPCYHLRFASNLAKYLLNSLTSSYTGLPVFAWRGETEEDFWWCIDKCVNSWQPNMILDDGGDATHWMLKKYPTMFKAIKGIVEESLTGVHRLYQLSKAGKLTVPAMNVNDSVTKTKFDNLYMCRESIIDR
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MPGIMALRKRAGDDKPLKNARIVGCTHINAQTAAGKLTVPAMNVNDSVTKTKFDNLYMCRESIIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIVLLAEGRLVNLSCSSLPSFVVSITACTQALALIELFNAPSGRYKSDVYLLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYYSMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIVLLAEGRLVNLSCSSLPSFVVSITACTQRDKSSLIPCYHLRFASNLAKYLLNSLTSSYTGLPVFAWRGETEEDFWWCIDKCVNSWQPNMILDDGGDATHWMLKKYPTMFKAIKGIVEESLTGVHRLYQLSKAGKLTVPAMNVNDSVTKTKFDNLYMCRESIIDR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	542	2.2.26 [Sep-21-2011]
Q96HN2	611	Putative adenosylhomocyst	yes	N/A	0.485	0.430	0.809	1e-135
Q68FL4	613	Putative adenosylhomocyst	yes	N/A	0.485	0.429	0.809	1e-135
Q80SW1	530	Putative adenosylhomocyst	no	N/A	0.485	0.496	0.809	1e-135
O43865	530	Putative adenosylhomocyst	no	N/A	0.485	0.496	0.809	1e-135
Q5R889	508	Putative adenosylhomocyst	no	N/A	0.485	0.517	0.805	1e-134
P50245	492	Putative adenosylhomocyst	no	N/A	0.501	0.552	0.761	1e-123
Q7NZF7	466	Adenosylhomocysteinase OS	yes	N/A	0.474	0.551	0.590	1e-88
Q63PT2	473	Adenosylhomocysteinase OS	yes	N/A	0.522	0.598	0.540	1e-87
A3NER1	473	Adenosylhomocysteinase OS	yes	N/A	0.522	0.598	0.540	1e-87
Q3JY79	473	Adenosylhomocysteinase OS	yes	N/A	0.522	0.598	0.540	1e-87

>sp|Q96HN2|SAHH3_HUMAN Putative adenosylhomocysteinase 3 OS=Homo sapiens GN=AHCYL2 PE=1 SV=1

 Score =  482 bits (1241), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 221/273 (80%), Positives = 249/273 (91%)

Query: 22  IVGCTHINAQTAAGKLTVPAMNVNDSVTKTKFDNLYMCRESIIDSLKRSTDVMFGGKQVV 81
           + G   +   + AGKL VPAMNVNDSVTK KFDNLY CRESI+D LKR+TD+MFGGKQVV
Sbjct: 337 VTGVHRLYQLSKAGKLCVPAMNVNDSVTKQKFDNLYCCRESILDGLKRTTDMMFGGKQVV 396

Query: 82  LCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATG 141
           +CGYGEVGKGCC +LK +G ++Y+TEIDPICALQACMDGF +VKLNEVIR VDIV+T TG
Sbjct: 397 VCGYGEVGKGCCAALKAMGSIVYVTEIDPICALQACMDGFRLVKLNEVIRQVDIVITCTG 456

Query: 142 NKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIV 201
           NKNVVTREH+D+MKN C+VCNMGHSNTEIDV SLRTP+LTWE+VRSQVDHVIWPDGKRIV
Sbjct: 457 NKNVVTREHLDRMKNSCIVCNMGHSNTEIDVASLRTPELTWERVRSQVDHVIWPDGKRIV 516

Query: 202 LLAEGRLVNLSCSSLPSFVVSITACTQALALIELFNAPSGRYKSDVYLLPKKMDEYVASL 261
           LLAEGRL+NLSCS++P+FV+SITA TQALALIEL+NAP GRYK DVYLLPKKMDEYVASL
Sbjct: 517 LLAEGRLLNLSCSTVPTFVLSITATTQALALIELYNAPEGRYKQDVYLLPKKMDEYVASL 576

Query: 262 HLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYY 294
           HLPTFDAHLTEL+DEQAKY+GLNK GPFKP+YY
Sbjct: 577 HLPTFDAHLTELTDEQAKYLGLNKNGPFKPNYY 609

Homo sapiens (taxid: 9606)
EC: 3EC: .EC: 3EC: .EC: 1EC: .EC: 1

>sp|Q68FL4|SAHH3_MOUSE Putative adenosylhomocysteinase 3 OS=Mus musculus GN=Ahcyl2 PE=1 SV=1

 Score =  482 bits (1241), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 221/273 (80%), Positives = 249/273 (91%)

Query: 22  IVGCTHINAQTAAGKLTVPAMNVNDSVTKTKFDNLYMCRESIIDSLKRSTDVMFGGKQVV 81
           + G   +   + AGKL VPAMNVNDSVTK KFDNLY CRESI+D LKR+TD+MFGGKQVV
Sbjct: 339 VTGVHRLYQLSKAGKLCVPAMNVNDSVTKQKFDNLYCCRESILDGLKRTTDMMFGGKQVV 398

Query: 82  LCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATG 141
           +CGYGEVGKGCC +LK +G ++Y+TEIDPICALQACMDGF +VKLNEVIR VDIV+T TG
Sbjct: 399 VCGYGEVGKGCCAALKAMGSIVYVTEIDPICALQACMDGFRLVKLNEVIRQVDIVITCTG 458

Query: 142 NKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIV 201
           NKNVVTREH+D+MKN C+VCNMGHSNTEIDV SLRTP+LTWE+VRSQVDHVIWPDGKRIV
Sbjct: 459 NKNVVTREHLDRMKNSCIVCNMGHSNTEIDVASLRTPELTWERVRSQVDHVIWPDGKRIV 518

Query: 202 LLAEGRLVNLSCSSLPSFVVSITACTQALALIELFNAPSGRYKSDVYLLPKKMDEYVASL 261
           LLAEGRL+NLSCS++P+FV+SITA TQALALIEL+NAP GRYK DVYLLPKKMDEYVASL
Sbjct: 519 LLAEGRLLNLSCSTVPTFVLSITATTQALALIELYNAPEGRYKQDVYLLPKKMDEYVASL 578

Query: 262 HLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYY 294
           HLPTFDAHLTEL+DEQAKY+GLNK GPFKP+YY
Sbjct: 579 HLPTFDAHLTELTDEQAKYLGLNKNGPFKPNYY 611

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 1

>sp|Q80SW1|SAHH2_MOUSE Putative adenosylhomocysteinase 2 OS=Mus musculus GN=Ahcyl1 PE=1 SV=1

 Score =  481 bits (1239), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 221/273 (80%), Positives = 249/273 (91%)

Query: 22  IVGCTHINAQTAAGKLTVPAMNVNDSVTKTKFDNLYMCRESIIDSLKRSTDVMFGGKQVV 81
           + G   +   + AGKL VPAMNVNDSVTK KFDNLY CRESI+D LKR+TDVMFGGKQVV
Sbjct: 256 VTGVHRLYQLSKAGKLCVPAMNVNDSVTKQKFDNLYCCRESILDGLKRTTDVMFGGKQVV 315

Query: 82  LCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATG 141
           +CGYGEVGKGCC +LK LG ++YITEIDPICALQACMDGF VVKLNEVIR VD+V+T TG
Sbjct: 316 VCGYGEVGKGCCAALKALGAIVYITEIDPICALQACMDGFRVVKLNEVIRQVDVVITCTG 375

Query: 142 NKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIV 201
           NKNVVTREH+D+MKN C+VCNMGHSNTEIDV SLRTP+LTWE+VRSQVDHVIWPDGKR+V
Sbjct: 376 NKNVVTREHLDRMKNSCIVCNMGHSNTEIDVTSLRTPELTWERVRSQVDHVIWPDGKRVV 435

Query: 202 LLAEGRLVNLSCSSLPSFVVSITACTQALALIELFNAPSGRYKSDVYLLPKKMDEYVASL 261
           LLAEGRL+NLSCS++P+FV+SITA TQALALIEL+NAP GRYK DVYLLPKKMDEYVASL
Sbjct: 436 LLAEGRLLNLSCSTVPTFVLSITATTQALALIELYNAPEGRYKQDVYLLPKKMDEYVASL 495

Query: 262 HLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYY 294
           HLP+FDAHLTEL+D+QAKY+GLNK GPFKP+YY
Sbjct: 496 HLPSFDAHLTELTDDQAKYLGLNKNGPFKPNYY 528

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 1

>sp|O43865|SAHH2_HUMAN Putative adenosylhomocysteinase 2 OS=Homo sapiens GN=AHCYL1 PE=1 SV=2

 Score =  481 bits (1239), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 221/273 (80%), Positives = 249/273 (91%)

Query: 22  IVGCTHINAQTAAGKLTVPAMNVNDSVTKTKFDNLYMCRESIIDSLKRSTDVMFGGKQVV 81
           + G   +   + AGKL VPAMNVNDSVTK KFDNLY CRESI+D LKR+TDVMFGGKQVV
Sbjct: 256 VTGVHRLYQLSKAGKLCVPAMNVNDSVTKQKFDNLYCCRESILDGLKRTTDVMFGGKQVV 315

Query: 82  LCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATG 141
           +CGYGEVGKGCC +LK LG ++YITEIDPICALQACMDGF VVKLNEVIR VD+V+T TG
Sbjct: 316 VCGYGEVGKGCCAALKALGAIVYITEIDPICALQACMDGFRVVKLNEVIRQVDVVITCTG 375

Query: 142 NKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIV 201
           NKNVVTREH+D+MKN C+VCNMGHSNTEIDV SLRTP+LTWE+VRSQVDHVIWPDGKR+V
Sbjct: 376 NKNVVTREHLDRMKNSCIVCNMGHSNTEIDVTSLRTPELTWERVRSQVDHVIWPDGKRVV 435

Query: 202 LLAEGRLVNLSCSSLPSFVVSITACTQALALIELFNAPSGRYKSDVYLLPKKMDEYVASL 261
           LLAEGRL+NLSCS++P+FV+SITA TQALALIEL+NAP GRYK DVYLLPKKMDEYVASL
Sbjct: 436 LLAEGRLLNLSCSTVPTFVLSITATTQALALIELYNAPEGRYKQDVYLLPKKMDEYVASL 495

Query: 262 HLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYY 294
           HLP+FDAHLTEL+D+QAKY+GLNK GPFKP+YY
Sbjct: 496 HLPSFDAHLTELTDDQAKYLGLNKNGPFKPNYY 528

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 1

>sp|Q5R889|SAHH3_PONAB Putative adenosylhomocysteinase 3 OS=Pongo abelii GN=AHCYL2 PE=2 SV=1

 Score =  479 bits (1233), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 220/273 (80%), Positives = 249/273 (91%)

Query: 22  IVGCTHINAQTAAGKLTVPAMNVNDSVTKTKFDNLYMCRESIIDSLKRSTDVMFGGKQVV 81
           + G   +   + AGKL VPAMNVNDSVTK KFDNLY CRESI+D LKR+TD+MFGGKQVV
Sbjct: 234 VTGVHRLYQLSKAGKLCVPAMNVNDSVTKQKFDNLYCCRESILDGLKRTTDMMFGGKQVV 293

Query: 82  LCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATG 141
           +CGYGEVGKGCC +LK +G ++Y+TEIDPICALQACMDGF +VKLNEVIR VDIV+T TG
Sbjct: 294 VCGYGEVGKGCCAALKAMGSIVYVTEIDPICALQACMDGFRLVKLNEVIRQVDIVITCTG 353

Query: 142 NKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIV 201
           NKNVVTREH+D+MKN C+VCN+GHSNTEIDV SLRTP+LTWE+VRSQVDHVIWPDGKRIV
Sbjct: 354 NKNVVTREHLDRMKNSCIVCNIGHSNTEIDVASLRTPELTWERVRSQVDHVIWPDGKRIV 413

Query: 202 LLAEGRLVNLSCSSLPSFVVSITACTQALALIELFNAPSGRYKSDVYLLPKKMDEYVASL 261
           LLAEGRL+NLSCS++P+FV+SITA TQALALIEL+NAP GRYK DVYLLPKKMDEYVASL
Sbjct: 414 LLAEGRLLNLSCSTVPTFVLSITATTQALALIELYNAPEGRYKQDVYLLPKKMDEYVASL 473

Query: 262 HLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYY 294
           HLPTFDAHLTEL+DEQAKY+GLNK GPFKP+YY
Sbjct: 474 HLPTFDAHLTELTDEQAKYLGLNKNGPFKPNYY 506

Pongo abelii (taxid: 9601)

EC: 3

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 1

>sp|P50245|SAHH2_DROME Putative adenosylhomocysteinase 2 OS=Drosophila melanogaster GN=Ahcy89E PE=2 SV=2

 Score =  442 bits (1137), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 208/273 (76%), Positives = 245/273 (89%), Gaps = 1/273 (0%)

Query: 22  IVGCTHINAQTAAGKLTVPAMNVNDSVTKTKFDNLYMCRESIIDSLKRSTDVMFGGKQVV 81
           + G   +   +  GKLTVPA+NVNDSVTK KFD  Y CR+SI+DSLKR+TD+MFGGKQVV
Sbjct: 219 VTGVHRLYMLSKGGKLTVPAINVNDSVTKNKFDTFYTCRDSILDSLKRTTDIMFGGKQVV 278

Query: 82  LCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATG 141
           +CGYG+VGKGC QSLKG GC++Y+TE+DPICALQA MDGF VV+LNEVIRTVD+VVTATG
Sbjct: 279 ICGYGDVGKGCAQSLKGQGCIVYVTEVDPICALQAAMDGFRVVRLNEVIRTVDVVVTATG 338

Query: 142 NKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIV 201
           NKNV+TR+HM++MKNGC++CNMGHS +EIDVN L TP+LTWE+VRSQVDH+ WPDG+ I+
Sbjct: 339 NKNVITRDHMNRMKNGCILCNMGHSCSEIDVNGLHTPELTWERVRSQVDHIRWPDGRMII 398

Query: 202 LLAEGRLVNLSCSSLPSFVVSITACTQALALIELFNAPSGRYKSDVYLLPKKMDEYVASL 261
           LLAEGRLVNLSCS++ SFVVS+ + TQALALIELF+AP GRYKSDVYLLPKKMDEYVASL
Sbjct: 399 LLAEGRLVNLSCSTISSFVVSVASSTQALALIELFSAP-GRYKSDVYLLPKKMDEYVASL 457

Query: 262 HLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYY 294
           HL TFDAHLTEL+DEQ+K+MGLNKAGPFK +YY
Sbjct: 458 HLATFDAHLTELTDEQSKFMGLNKAGPFKANYY 490

Drosophila melanogaster (taxid: 7227)

EC: 3

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 1

>sp|Q7NZF7|SAHH_CHRVO Adenosylhomocysteinase OS=Chromobacterium violaceum (strain ATCC 12472 / DSM 30191 / JCM 1249 / NBRC 12614 / NCIMB 9131 / NCTC 9757) GN=ahcY PE=3 SV=1

 Score =  328 bits (840), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 154/261 (59%), Positives = 198/261 (75%), Gaps = 4/261 (1%)

Query: 35  GKLTVPAMNVNDSVTKTKFDNLYMCRESIIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQ 94
           G L  PA+NVNDSVTK+KFDNLY CRES++D +KR+TDVM  GK  V+ GYG+VGKGC Q
Sbjct: 207 GHLPFPAINVNDSVTKSKFDNLYGCRESLVDGIKRATDVMVAGKVAVVLGYGDVGKGCAQ 266

Query: 95  SLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHMDKM 154
           SL+GLG  +++TEIDPICALQA M+G+ VV+++EV    DI VTATGN  V+T EHM KM
Sbjct: 267 SLRGLGATVWVTEIDPICALQAAMEGYRVVRMDEVADQADIFVTATGNVGVITHEHMKKM 326

Query: 155 KNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIVLLAEGRLVNLSCS 214
           +N  ++CN+GH ++EI+V SLR     WE ++ QVDH+I+PDGKR++LLAEGRLVNL C+
Sbjct: 327 RNNAIICNIGHFDSEIEVASLR--QYQWENIKPQVDHIIFPDGKRVILLAEGRLVNLGCA 384

Query: 215 S-LPSFVVSITACTQALALIELFNAPSGRYKSDVYLLPKKMDEYVASLHLPTFDAHLTEL 273
           +  PSFV+S +   Q LA IELF A   +Y+  VY+LPK +DE VA LHL    A LTEL
Sbjct: 385 TGHPSFVMSNSFTNQVLAQIELF-ANGHKYEKKVYVLPKHLDEKVARLHLARIGARLTEL 443

Query: 274 SDEQAKYMGLNKAGPFKPSYY 294
           SD+QA Y+ + K GP+KP +Y
Sbjct: 444 SDQQAAYISVPKQGPYKPDHY 464

May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine.

Chromobacterium violaceum (strain ATCC 12472 / DSM 30191 / JCM 1249 / NBRC 12614 / NCIMB 9131 / NCTC 9757) (taxid: 243365)

EC: 3

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 1

>sp|Q63PT2|SAHH_BURPS Adenosylhomocysteinase OS=Burkholderia pseudomallei (strain K96243) GN=ahcY PE=3 SV=1

 Score =  324 bits (830), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 155/287 (54%), Positives = 200/287 (69%), Gaps = 4/287 (1%)

Query: 9   KRAGDDKPLKNARIVGCTHINAQTAAGKLTVPAMNVNDSVTKTKFDNLYMCRESIIDSLK 68
           KR    K +      G   +      G+L  PA NVNDSVTK+KFDNLY CRES++D +K
Sbjct: 188 KRLAHIKGVTEETTTGVHRLYQMEKDGRLPFPAFNVNDSVTKSKFDNLYGCRESLVDGIK 247

Query: 69  RSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNE 128
           R+TDVM  GK  V+ GYG+VGKGC QSL+GLG  +++TEIDPICALQA M+G+ VV +  
Sbjct: 248 RATDVMIAGKIAVVAGYGDVGKGCAQSLRGLGATVWVTEIDPICALQAAMEGYRVVTMEY 307

Query: 129 VIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQ 188
                DI VTATGN +V+  +HM  M++  +VCN+GH ++EIDV S R     WE ++ Q
Sbjct: 308 AADKADIFVTATGNYHVINHDHMKAMRHNAIVCNIGHFDSEIDVASTR--QYQWENIKPQ 365

Query: 189 VDHVIWPDGKRIVLLAEGRLVNLSCSS-LPSFVVSITACTQALALIELFNAPSGRYKSDV 247
           VDH+I+PDGKR++LLAEGRLVNL C++  PSFV+S +   Q LA IELF    G Y + V
Sbjct: 366 VDHIIFPDGKRVILLAEGRLVNLGCATGHPSFVMSNSFTNQTLAQIELFTR-GGEYANKV 424

Query: 248 YLLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYY 294
           Y+LPK +DE VA LHL    A L+ELSD+QA Y+G++KAGPFKP +Y
Sbjct: 425 YVLPKHLDEKVARLHLARIGAQLSELSDDQAAYIGVSKAGPFKPDHY 471

May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine.

Burkholderia pseudomallei (strain K96243) (taxid: 272560)

EC: 3

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 1

>sp|A3NER1|SAHH_BURP6 Adenosylhomocysteinase OS=Burkholderia pseudomallei (strain 668) GN=ahcY PE=3 SV=1

 Score =  324 bits (830), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 155/287 (54%), Positives = 200/287 (69%), Gaps = 4/287 (1%)

Query: 9   KRAGDDKPLKNARIVGCTHINAQTAAGKLTVPAMNVNDSVTKTKFDNLYMCRESIIDSLK 68
           KR    K +      G   +      G+L  PA NVNDSVTK+KFDNLY CRES++D +K
Sbjct: 188 KRLAHIKGVTEETTTGVHRLYQMEKDGRLPFPAFNVNDSVTKSKFDNLYGCRESLVDGIK 247

Query: 69  RSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNE 128
           R+TDVM  GK  V+ GYG+VGKGC QSL+GLG  +++TEIDPICALQA M+G+ VV +  
Sbjct: 248 RATDVMIAGKIAVVAGYGDVGKGCAQSLRGLGATVWVTEIDPICALQAAMEGYRVVTMEY 307

Query: 129 VIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQ 188
                DI VTATGN +V+  +HM  M++  +VCN+GH ++EIDV S R     WE ++ Q
Sbjct: 308 AADKADIFVTATGNYHVINHDHMKAMRHNAIVCNIGHFDSEIDVASTR--QYQWENIKPQ 365

Query: 189 VDHVIWPDGKRIVLLAEGRLVNLSCSS-LPSFVVSITACTQALALIELFNAPSGRYKSDV 247
           VDH+I+PDGKR++LLAEGRLVNL C++  PSFV+S +   Q LA IELF    G Y + V
Sbjct: 366 VDHIIFPDGKRVILLAEGRLVNLGCATGHPSFVMSNSFTNQTLAQIELFTR-GGEYANKV 424

Query: 248 YLLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYY 294
           Y+LPK +DE VA LHL    A L+ELSD+QA Y+G++KAGPFKP +Y
Sbjct: 425 YVLPKHLDEKVARLHLARIGAQLSELSDDQAAYIGVSKAGPFKPDHY 471

May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine.

Burkholderia pseudomallei (strain 668) (taxid: 320373)

EC: 3

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 1

>sp|Q3JY79|SAHH_BURP1 Adenosylhomocysteinase OS=Burkholderia pseudomallei (strain 1710b) GN=ahcY PE=1 SV=1

 Score =  324 bits (830), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 155/287 (54%), Positives = 200/287 (69%), Gaps = 4/287 (1%)

Query: 9   KRAGDDKPLKNARIVGCTHINAQTAAGKLTVPAMNVNDSVTKTKFDNLYMCRESIIDSLK 68
           KR    K +      G   +      G+L  PA NVNDSVTK+KFDNLY CRES++D +K
Sbjct: 188 KRLAHIKGVTEETTTGVHRLYQMEKDGRLPFPAFNVNDSVTKSKFDNLYGCRESLVDGIK 247

Query: 69  RSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNE 128
           R+TDVM  GK  V+ GYG+VGKGC QSL+GLG  +++TEIDPICALQA M+G+ VV +  
Sbjct: 248 RATDVMIAGKIAVVAGYGDVGKGCAQSLRGLGATVWVTEIDPICALQAAMEGYRVVTMEY 307

Query: 129 VIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQ 188
                DI VTATGN +V+  +HM  M++  +VCN+GH ++EIDV S R     WE ++ Q
Sbjct: 308 AADKADIFVTATGNYHVINHDHMKAMRHNAIVCNIGHFDSEIDVASTR--QYQWENIKPQ 365

Query: 189 VDHVIWPDGKRIVLLAEGRLVNLSCSS-LPSFVVSITACTQALALIELFNAPSGRYKSDV 247
           VDH+I+PDGKR++LLAEGRLVNL C++  PSFV+S +   Q LA IELF    G Y + V
Sbjct: 366 VDHIIFPDGKRVILLAEGRLVNLGCATGHPSFVMSNSFTNQTLAQIELFTR-GGEYANKV 424

Query: 248 YLLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYY 294
           Y+LPK +DE VA LHL    A L+ELSD+QA Y+G++KAGPFKP +Y
Sbjct: 425 YVLPKHLDEKVARLHLARIGAQLSELSDDQAAYIGVSKAGPFKPDHY 471

May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine.

Burkholderia pseudomallei (strain 1710b) (taxid: 320372)

EC: 3

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	542
307182708	564	Putative adenosylhomocysteinase 3 [Campo	0.503	0.484	0.869	1e-146
340709195	532	PREDICTED: putative adenosylhomocysteina	0.485	0.494	0.897	1e-145
340709197	516	PREDICTED: putative adenosylhomocysteina	0.485	0.509	0.897	1e-145
383864821	528	PREDICTED: putative adenosylhomocysteina	0.485	0.498	0.893	1e-145
322789035	526	hypothetical protein SINV_08970 [Solenop	0.488	0.503	0.887	1e-145
110749750	532	PREDICTED: putative adenosylhomocysteina	0.485	0.494	0.893	1e-145
307194517	540	Putative adenosylhomocysteinase 3 [Harpe	0.516	0.518	0.879	1e-145
332023183	539	Putative adenosylhomocysteinase 3 [Acrom	0.488	0.491	0.890	1e-145
242013664	549	adenosylhomocysteinase, putative [Pedicu	0.535	0.528	0.849	1e-145
345486611	532	PREDICTED: putative adenosylhomocysteina	0.485	0.494	0.893	1e-144

>gi|307182708|gb|EFN69832.1| Putative adenosylhomocysteinase 3 [Camponotus floridanus]

 Score =  524 bits (1349), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 246/283 (86%), Positives = 265/283 (93%)

Query: 22  IVGCTHINAQTAAGKLTVPAMNVNDSVTKTKFDNLYMCRESIIDSLKRSTDVMFGGKQVV 81
           + G   +   + AGKL+VPAMNVNDSVTKTKFDNLY CRESIIDSLKRSTD+MFGGKQVV
Sbjct: 280 VTGVHRLYQLSKAGKLSVPAMNVNDSVTKTKFDNLYSCRESIIDSLKRSTDIMFGGKQVV 339

Query: 82  LCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATG 141
           +CGYGEVGKGCCQ+LKGLGC++YITEIDPICALQA MDGF V+KLNEVIR VDIV+TATG
Sbjct: 340 ICGYGEVGKGCCQALKGLGCIVYITEIDPICALQASMDGFRVMKLNEVIRNVDIVITATG 399

Query: 142 NKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIV 201
           NKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRI+
Sbjct: 400 NKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRII 459

Query: 202 LLAEGRLVNLSCSSLPSFVVSITACTQALALIELFNAPSGRYKSDVYLLPKKMDEYVASL 261
           LLAEGRLVNLSCSS+PSFVVSITA TQALALIELFNAP GRYKSDVYLLPKKMDEYVASL
Sbjct: 460 LLAEGRLVNLSCSSIPSFVVSITAATQALALIELFNAPPGRYKSDVYLLPKKMDEYVASL 519

Query: 262 HLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYYSMDGFSVVKL 304
           HLPTFDAHLTEL+DEQAKYMGLNKAGPFKP+YY +   SV+++
Sbjct: 520 HLPTFDAHLTELTDEQAKYMGLNKAGPFKPNYYRLVSSSVMRV 562

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340709195|ref|XP_003393197.1| PREDICTED: putative adenosylhomocysteinase 3-like isoform 1 [Bombus terrestris] gi|350425225|ref|XP_003494052.1| PREDICTED: putative adenosylhomocysteinase 3-like [Bombus impatiens]

 Score =  523 bits (1347), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 245/273 (89%), Positives = 260/273 (95%)

Query: 22  IVGCTHINAQTAAGKLTVPAMNVNDSVTKTKFDNLYMCRESIIDSLKRSTDVMFGGKQVV 81
           + G   +   + AGKL+VPAMNVNDSVTKTKFDNLY CRESIIDSLKRSTD+MFGGKQVV
Sbjct: 258 VTGVHRLYQLSKAGKLSVPAMNVNDSVTKTKFDNLYSCRESIIDSLKRSTDIMFGGKQVV 317

Query: 82  LCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATG 141
           +CGYGEVGKGCCQ+LKGLGC++YITEIDPICALQA MDGF V+KLNEVIR VDIV+TATG
Sbjct: 318 ICGYGEVGKGCCQALKGLGCIVYITEIDPICALQASMDGFRVMKLNEVIRNVDIVITATG 377

Query: 142 NKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIV 201
           NKNVVTREHMDKMKNGCVVCNMGHSNTEID+NSLRTPDLTWEKVRSQVDHVIWPDGKRIV
Sbjct: 378 NKNVVTREHMDKMKNGCVVCNMGHSNTEIDINSLRTPDLTWEKVRSQVDHVIWPDGKRIV 437

Query: 202 LLAEGRLVNLSCSSLPSFVVSITACTQALALIELFNAPSGRYKSDVYLLPKKMDEYVASL 261
           LLAEGRLVNLSCSS+PSFVVSITA TQALALIELFNAPSGRYKSDVYLLPKKMDEYVASL
Sbjct: 438 LLAEGRLVNLSCSSIPSFVVSITAATQALALIELFNAPSGRYKSDVYLLPKKMDEYVASL 497

Query: 262 HLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYY 294
           HLPTFDAHLTEL+DEQAKYMGLNKAGPFKP+YY
Sbjct: 498 HLPTFDAHLTELTDEQAKYMGLNKAGPFKPNYY 530

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340709197|ref|XP_003393198.1| PREDICTED: putative adenosylhomocysteinase 3-like isoform 2 [Bombus terrestris]

 Score =  522 bits (1344), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 245/273 (89%), Positives = 260/273 (95%)

Query: 22  IVGCTHINAQTAAGKLTVPAMNVNDSVTKTKFDNLYMCRESIIDSLKRSTDVMFGGKQVV 81
           + G   +   + AGKL+VPAMNVNDSVTKTKFDNLY CRESIIDSLKRSTD+MFGGKQVV
Sbjct: 242 VTGVHRLYQLSKAGKLSVPAMNVNDSVTKTKFDNLYSCRESIIDSLKRSTDIMFGGKQVV 301

Query: 82  LCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATG 141
           +CGYGEVGKGCCQ+LKGLGC++YITEIDPICALQA MDGF V+KLNEVIR VDIV+TATG
Sbjct: 302 ICGYGEVGKGCCQALKGLGCIVYITEIDPICALQASMDGFRVMKLNEVIRNVDIVITATG 361

Query: 142 NKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIV 201
           NKNVVTREHMDKMKNGCVVCNMGHSNTEID+NSLRTPDLTWEKVRSQVDHVIWPDGKRIV
Sbjct: 362 NKNVVTREHMDKMKNGCVVCNMGHSNTEIDINSLRTPDLTWEKVRSQVDHVIWPDGKRIV 421

Query: 202 LLAEGRLVNLSCSSLPSFVVSITACTQALALIELFNAPSGRYKSDVYLLPKKMDEYVASL 261
           LLAEGRLVNLSCSS+PSFVVSITA TQALALIELFNAPSGRYKSDVYLLPKKMDEYVASL
Sbjct: 422 LLAEGRLVNLSCSSIPSFVVSITAATQALALIELFNAPSGRYKSDVYLLPKKMDEYVASL 481

Query: 262 HLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYY 294
           HLPTFDAHLTEL+DEQAKYMGLNKAGPFKP+YY
Sbjct: 482 HLPTFDAHLTELTDEQAKYMGLNKAGPFKPNYY 514

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383864821|ref|XP_003707876.1| PREDICTED: putative adenosylhomocysteinase 3-like [Megachile rotundata]

 Score =  521 bits (1343), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 244/273 (89%), Positives = 260/273 (95%)

Query: 22  IVGCTHINAQTAAGKLTVPAMNVNDSVTKTKFDNLYMCRESIIDSLKRSTDVMFGGKQVV 81
           + G   +   + AGKL+VPAMNVNDSVTKTKFDNLY CRESIIDSLKRSTD+MFGGKQVV
Sbjct: 254 VTGVHRLYQLSKAGKLSVPAMNVNDSVTKTKFDNLYSCRESIIDSLKRSTDIMFGGKQVV 313

Query: 82  LCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATG 141
           +CGYGEVGKGCCQ+LKGLGC++YITEIDPICALQA MDGF V+KLNEVIR VDIV+TATG
Sbjct: 314 ICGYGEVGKGCCQALKGLGCIVYITEIDPICALQASMDGFRVMKLNEVIRNVDIVITATG 373

Query: 142 NKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIV 201
           NKNVVTREHMDKMKNGCVVCNMGHSNTEID+NSLRTPDLTWEKVRSQVDHVIWPDGKRIV
Sbjct: 374 NKNVVTREHMDKMKNGCVVCNMGHSNTEIDINSLRTPDLTWEKVRSQVDHVIWPDGKRIV 433

Query: 202 LLAEGRLVNLSCSSLPSFVVSITACTQALALIELFNAPSGRYKSDVYLLPKKMDEYVASL 261
           LLAEGRLVNLSCSS+PSFVVSITA TQALALIELFNAP+GRYKSDVYLLPKKMDEYVASL
Sbjct: 434 LLAEGRLVNLSCSSIPSFVVSITAATQALALIELFNAPTGRYKSDVYLLPKKMDEYVASL 493

Query: 262 HLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYY 294
           HLPTFDAHLTEL+DEQAKYMGLNKAGPFKP+YY
Sbjct: 494 HLPTFDAHLTELTDEQAKYMGLNKAGPFKPNYY 526

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322789035|gb|EFZ14493.1| hypothetical protein SINV_08970 [Solenopsis invicta]

 Score =  521 bits (1343), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 244/275 (88%), Positives = 260/275 (94%)

Query: 22  IVGCTHINAQTAAGKLTVPAMNVNDSVTKTKFDNLYMCRESIIDSLKRSTDVMFGGKQVV 81
           + G   +   + AGKL+VPAMNVNDSVTKTKFDNLY CRESIIDSLKRSTD+MFGGKQVV
Sbjct: 249 VTGVHRLYQLSKAGKLSVPAMNVNDSVTKTKFDNLYSCRESIIDSLKRSTDIMFGGKQVV 308

Query: 82  LCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATG 141
           +CGYGEVGKGCCQ+LKGLGC++YITEIDPICALQA MDGF V+KLNEVIR VDIV+TATG
Sbjct: 309 ICGYGEVGKGCCQALKGLGCIVYITEIDPICALQASMDGFRVMKLNEVIRNVDIVITATG 368

Query: 142 NKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIV 201
           NKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRI+
Sbjct: 369 NKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRII 428

Query: 202 LLAEGRLVNLSCSSLPSFVVSITACTQALALIELFNAPSGRYKSDVYLLPKKMDEYVASL 261
           LLAEGRLVNLSCSS+PSFVVSITA TQALALIELFNAP GRYKSDVYLLPKKMDEYVASL
Sbjct: 429 LLAEGRLVNLSCSSIPSFVVSITAATQALALIELFNAPPGRYKSDVYLLPKKMDEYVASL 488

Query: 262 HLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYYSM 296
           HLPTFDAHLTEL+DEQAKYMGLNKAGPFKP+YY +
Sbjct: 489 HLPTFDAHLTELTDEQAKYMGLNKAGPFKPNYYRL 523

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|110749750|ref|XP_624152.2| PREDICTED: putative adenosylhomocysteinase 3-like [Apis mellifera] gi|380027184|ref|XP_003697310.1| PREDICTED: putative adenosylhomocysteinase 3-like [Apis florea]

 Score =  521 bits (1342), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 244/273 (89%), Positives = 259/273 (94%)

Query: 22  IVGCTHINAQTAAGKLTVPAMNVNDSVTKTKFDNLYMCRESIIDSLKRSTDVMFGGKQVV 81
           + G   +   + AGKL+VPAMNVNDSVTKTKFDNLY CRESIIDSLKRSTD+MFGGKQVV
Sbjct: 258 VTGVHRLYQLSKAGKLSVPAMNVNDSVTKTKFDNLYSCRESIIDSLKRSTDIMFGGKQVV 317

Query: 82  LCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATG 141
           +CGYGEVGKGCCQ+LKGLGC++YITEIDPICALQA MDGF V+KLNEVIR VDIV+TATG
Sbjct: 318 ICGYGEVGKGCCQALKGLGCIVYITEIDPICALQASMDGFRVMKLNEVIRNVDIVITATG 377

Query: 142 NKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIV 201
           NKNVVTREHMDKMKNGCVVCNMGHSNTEID+NSLRTPDLTWEKVRSQVDHVIWPDGKRIV
Sbjct: 378 NKNVVTREHMDKMKNGCVVCNMGHSNTEIDINSLRTPDLTWEKVRSQVDHVIWPDGKRIV 437

Query: 202 LLAEGRLVNLSCSSLPSFVVSITACTQALALIELFNAPSGRYKSDVYLLPKKMDEYVASL 261
           LLAEGRLVNLSCSS+PSFVVSITA TQALALIELFNAP GRYKSDVYLLPKKMDEYVASL
Sbjct: 438 LLAEGRLVNLSCSSIPSFVVSITAATQALALIELFNAPPGRYKSDVYLLPKKMDEYVASL 497

Query: 262 HLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYY 294
           HLPTFDAHLTEL+DEQAKYMGLNKAGPFKP+YY
Sbjct: 498 HLPTFDAHLTELTDEQAKYMGLNKAGPFKPNYY 530

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307194517|gb|EFN76809.1| Putative adenosylhomocysteinase 3 [Harpegnathos saltator]

 Score =  521 bits (1342), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 247/281 (87%), Positives = 263/281 (93%), Gaps = 1/281 (0%)

Query: 22  IVGCTHINAQTAAGKLTVPAMNVNDSVTKTKFDNLYMCRESIIDSLKRSTDVMFGGKQVV 81
           + G   +   + AGKL+VPAMNVNDSVTKTKFDNLY CRESIIDSLKRSTDVMFGGKQVV
Sbjct: 254 VTGVHRLYQLSKAGKLSVPAMNVNDSVTKTKFDNLYSCRESIIDSLKRSTDVMFGGKQVV 313

Query: 82  LCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATG 141
           +CGYGEVGKGCCQ+LKGLGC++YITEIDPICALQA MDGF V+KLNEVIR VDIV+TATG
Sbjct: 314 ICGYGEVGKGCCQALKGLGCIVYITEIDPICALQASMDGFRVMKLNEVIRNVDIVITATG 373

Query: 142 NKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIV 201
           NKNVVTREHMDKMKNGCVVCNMGHSNTEID+NSLRTPDLTWEKVRSQVDHVIWPDGKRIV
Sbjct: 374 NKNVVTREHMDKMKNGCVVCNMGHSNTEIDINSLRTPDLTWEKVRSQVDHVIWPDGKRIV 433

Query: 202 LLAEGRLVNLSCSSLPSFVVSITACTQALALIELFNAPSGRYKSDVYLLPKKMDEYVASL 261
           LLAEGRLVNLSCSS+PSFVVSITA TQALALIELFNAP GRYKSDVYLLPKKMDEYVASL
Sbjct: 434 LLAEGRLVNLSCSSIPSFVVSITAATQALALIELFNAPPGRYKSDVYLLPKKMDEYVASL 493

Query: 262 HLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYYSM-DGFSV 301
           HLPTFDAHLTEL+DEQAKYMGLNKAGPFKP+YY +  GF +
Sbjct: 494 HLPTFDAHLTELTDEQAKYMGLNKAGPFKPNYYRLVSGFRL 534

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332023183|gb|EGI63439.1| Putative adenosylhomocysteinase 3 [Acromyrmex echinatior]

 Score =  521 bits (1342), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 245/275 (89%), Positives = 260/275 (94%)

Query: 22  IVGCTHINAQTAAGKLTVPAMNVNDSVTKTKFDNLYMCRESIIDSLKRSTDVMFGGKQVV 81
           + G   +   + AGKL+VPAMNVNDSVTKTKFDNLY CRESIIDSLKRSTD+MFGGKQVV
Sbjct: 254 VTGVHRLYQLSKAGKLSVPAMNVNDSVTKTKFDNLYSCRESIIDSLKRSTDIMFGGKQVV 313

Query: 82  LCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATG 141
           +CGYGEVGKGCCQ+LKGLGC++YITEIDPICALQA MDGF V+KLNEVIR VDIV+TATG
Sbjct: 314 ICGYGEVGKGCCQALKGLGCIVYITEIDPICALQASMDGFRVMKLNEVIRNVDIVITATG 373

Query: 142 NKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIV 201
           NKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIV
Sbjct: 374 NKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIV 433

Query: 202 LLAEGRLVNLSCSSLPSFVVSITACTQALALIELFNAPSGRYKSDVYLLPKKMDEYVASL 261
           LLAEGRLVNLSCSS+PSFVVSITA TQALALIELFNAP GRYKSDVYLLPKKMDEYVASL
Sbjct: 434 LLAEGRLVNLSCSSIPSFVVSITAATQALALIELFNAPPGRYKSDVYLLPKKMDEYVASL 493

Query: 262 HLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYYSM 296
           HLPTFDAHLTEL+DEQAKYMGLNKAGPFKP+YY +
Sbjct: 494 HLPTFDAHLTELTDEQAKYMGLNKAGPFKPNYYRL 528

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242013664|ref|XP_002427522.1| adenosylhomocysteinase, putative [Pediculus humanus corporis] gi|212511924|gb|EEB14784.1| adenosylhomocysteinase, putative [Pediculus humanus corporis]

 Score =  520 bits (1340), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 249/293 (84%), Positives = 267/293 (91%), Gaps = 3/293 (1%)

Query: 5   MALRKRAGDDKPLK---NARIVGCTHINAQTAAGKLTVPAMNVNDSVTKTKFDNLYMCRE 61
           + L+K  G  K +K      + G   +   + AGKL+VPAMNVNDSVTKTK+DNLY CRE
Sbjct: 255 LMLKKYPGMFKMIKGIVEESVTGVHRLYQLSKAGKLSVPAMNVNDSVTKTKYDNLYSCRE 314

Query: 62  SIIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGF 121
           SIIDSLKRSTDVMFGGKQV +CGYGEVGKGCCQ+LKGLGCV+Y+TEIDPICALQACMDGF
Sbjct: 315 SIIDSLKRSTDVMFGGKQVAVCGYGEVGKGCCQALKGLGCVVYVTEIDPICALQACMDGF 374

Query: 122 SVVKLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLT 181
            VVKLNEVIR VDIVVTATGNKN+VTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLT
Sbjct: 375 RVVKLNEVIRNVDIVVTATGNKNIVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLT 434

Query: 182 WEKVRSQVDHVIWPDGKRIVLLAEGRLVNLSCSSLPSFVVSITACTQALALIELFNAPSG 241
           WEKVRSQVDH+IWPDGKRIVLLAEGRLVNLSCSSLPSFVVSITA TQALALIELFNAP G
Sbjct: 435 WEKVRSQVDHIIWPDGKRIVLLAEGRLVNLSCSSLPSFVVSITAATQALALIELFNAPHG 494

Query: 242 RYKSDVYLLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYY 294
           RYKSDVYLLPKKMDEYVASLHLPTFDAHLTEL+D+QAKYMGL+KAGPFKP+YY
Sbjct: 495 RYKSDVYLLPKKMDEYVASLHLPTFDAHLTELTDDQAKYMGLSKAGPFKPNYY 547

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345486611|ref|XP_001605394.2| PREDICTED: putative adenosylhomocysteinase 3-like isoform 1 [Nasonia vitripennis]

 Score =  519 bits (1337), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 244/273 (89%), Positives = 257/273 (94%)

Query: 22  IVGCTHINAQTAAGKLTVPAMNVNDSVTKTKFDNLYMCRESIIDSLKRSTDVMFGGKQVV 81
           + G   +   + A KL+VPAMNVNDSVTKTKFDNLY CRESIIDSLKRSTDVMFGGKQVV
Sbjct: 259 VTGVHRLYQLSKANKLSVPAMNVNDSVTKTKFDNLYSCRESIIDSLKRSTDVMFGGKQVV 318

Query: 82  LCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATG 141
           +CGYGEVGKGCCQ+LKGLGC++YITEIDPICALQA MDGF VVKLNEVIR VDIV+TATG
Sbjct: 319 ICGYGEVGKGCCQALKGLGCIVYITEIDPICALQASMDGFRVVKLNEVIRNVDIVITATG 378

Query: 142 NKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIV 201
           NKNVVTREHMDKMKNGCVVCNMGHSNTEID+NSLRT DLTWEKVRSQVDHVIWPDGKRIV
Sbjct: 379 NKNVVTREHMDKMKNGCVVCNMGHSNTEIDINSLRTSDLTWEKVRSQVDHVIWPDGKRIV 438

Query: 202 LLAEGRLVNLSCSSLPSFVVSITACTQALALIELFNAPSGRYKSDVYLLPKKMDEYVASL 261
           LLAEGRLVNLSCSS+PSFVVSITA TQALALIELFNAP GRYKSDVYLLPKKMDEYVASL
Sbjct: 439 LLAEGRLVNLSCSSIPSFVVSITAATQALALIELFNAPQGRYKSDVYLLPKKMDEYVASL 498

Query: 262 HLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYY 294
           HLPTFDAHLTEL+DEQAKYMGLNKAGPFKP+YY
Sbjct: 499 HLPTFDAHLTELTDEQAKYMGLNKAGPFKPNYY 531

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	542
FB|FBgn0015011	492	Ahcy89E "Adenosylhomocysteinas	0.501	0.552	0.761	2.3e-129
FB|FBgn0035371	521	CG9977 [Drosophila melanogaste	0.516	0.537	0.839	3.6e-128
UNIPROTKB|F1P7I1	524	AHCYL1 "Adenosylhomocysteinase	0.505	0.522	0.810	6.3e-124
ZFIN|ZDB-GENE-070112-1522	516	zgc:158222 "zgc:158222" [Danio	0.516	0.542	0.728	1.5e-123
UNIPROTKB|F1MWH2	530	AHCYL1 "Adenosylhomocysteinase	0.503	0.515	0.809	1.7e-123
UNIPROTKB|E2REN0	517	AHCYL1 "Adenosylhomocysteinase	0.503	0.528	0.809	1.7e-123
UNIPROTKB|O43865	530	AHCYL1 "Putative adenosylhomoc	0.503	0.515	0.809	1.7e-123
UNIPROTKB|F1S610	494	AHCYL1 "Adenosylhomocysteinase	0.503	0.552	0.809	1.7e-123
MGI|MGI:2385184	530	Ahcyl1 "S-adenosylhomocysteine	0.503	0.515	0.809	1.7e-123
RGD|1309768	529	Ahcyl1 "adenosylhomocysteinase	0.503	0.516	0.809	1.7e-123

FB|FBgn0015011 Ahcy89E "Adenosylhomocysteinase 89E" [Drosophila melanogaster (taxid:7227)]

 Score = 1150 (409.9 bits), Expect = 2.3e-129, Sum P(2) = 2.3e-129
 Identities = 208/273 (76%), Positives = 245/273 (89%)

Query:    22 IVGCTHINAQTAAGKLTVPAMNVNDSVTKTKFDNLYMCRESIIDSLKRSTDVMFGGKQVV 81
             + G   +   +  GKLTVPA+NVNDSVTK KFD  Y CR+SI+DSLKR+TD+MFGGKQVV
Sbjct:   219 VTGVHRLYMLSKGGKLTVPAINVNDSVTKNKFDTFYTCRDSILDSLKRTTDIMFGGKQVV 278

Query:    82 LCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATG 141
             +CGYG+VGKGC QSLKG GC++Y+TE+DPICALQA MDGF VV+LNEVIRTVD+VVTATG
Sbjct:   279 ICGYGDVGKGCAQSLKGQGCIVYVTEVDPICALQAAMDGFRVVRLNEVIRTVDVVVTATG 338

Query:   142 NKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIV 201
             NKNV+TR+HM++MKNGC++CNMGHS +EIDVN L TP+LTWE+VRSQVDH+ WPDG+ I+
Sbjct:   339 NKNVITRDHMNRMKNGCILCNMGHSCSEIDVNGLHTPELTWERVRSQVDHIRWPDGRMII 398

Query:   202 LLAEGRLVNLSCSSLPSFVVSITACTQALALIELFNAPSGRYKSDVYLLPKKMDEYVASL 261
             LLAEGRLVNLSCS++ SFVVS+ + TQALALIELF+AP GRYKSDVYLLPKKMDEYVASL
Sbjct:   399 LLAEGRLVNLSCSTISSFVVSVASSTQALALIELFSAP-GRYKSDVYLLPKKMDEYVASL 457

Query:   262 HLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYY 294
             HL TFDAHLTEL+DEQ+K+MGLNKAGPFK +YY
Sbjct:   458 HLATFDAHLTELTDEQSKFMGLNKAGPFKANYY 490

GO:0004013 "adenosylhomocysteinase activity" evidence=ISS;NAS

GO:0006730 "one-carbon metabolic process" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

FB|FBgn0035371 CG9977 [Drosophila melanogaster (taxid:7227)]

 Score = 1258 (447.9 bits), Expect = 3.6e-128, P = 3.6e-128
 Identities = 235/280 (83%), Positives = 255/280 (91%)

Query:    15 KPLKNARIVGCTHINAQTAAGKLTVPAMNVNDSVTKTKFDNLYMCRESIIDSLKRSTDVM 74
             K +    + G   +   + AGKLTVPAMNVNDSVTKTKFDNLY C+ESI+DSLKRSTDVM
Sbjct:   240 KGIVEESVTGVHRLYQLSKAGKLTVPAMNVNDSVTKTKFDNLYSCKESILDSLKRSTDVM 299

Query:    75 FGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVD 134
             FGGKQVV+CGYG+VGKGC Q+LKG GC++YITEIDPICALQA MDGF VVKLNEVIR VD
Sbjct:   300 FGGKQVVVCGYGDVGKGCAQALKGQGCIVYITEIDPICALQASMDGFRVVKLNEVIRNVD 359

Query:   135 IVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIW 194
             IVVTATGNKNVV REHMDKMK+GC+VCNMGHSNTEIDVN LRTPDLTWEKVRSQVDH+IW
Sbjct:   360 IVVTATGNKNVVVREHMDKMKSGCIVCNMGHSNTEIDVNGLRTPDLTWEKVRSQVDHIIW 419

Query:   195 PDGKRIVLLAEGRLVNLSCSSLPSFVVSITACTQALALIELFNAPSGRYKSDVYLLPKKM 254
             P+GK I+LLAEGRLVNLSCSS+PSF VSIT+ TQALALIELFNAP GRYKSDVYLLPKKM
Sbjct:   420 PEGKYIILLAEGRLVNLSCSSIPSFAVSITSATQALALIELFNAPPGRYKSDVYLLPKKM 479

Query:   255 DEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYY 294
             DEYVASLHLPTFDAHLTELSDE+AKYMGLNKAGPFKP+YY
Sbjct:   480 DEYVASLHLPTFDAHLTELSDEKAKYMGLNKAGPFKPNYY 519

GO:0004013 "adenosylhomocysteinase activity" evidence=ISS

GO:0006730 "one-carbon metabolic process" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|F1P7I1 AHCYL1 "Adenosylhomocysteinase" [Canis lupus familiaris (taxid:9615)]

 Score = 1218 (433.8 bits), Expect = 6.3e-124, P = 6.3e-124
 Identities = 222/274 (81%), Positives = 250/274 (91%)

Query:    22 IVGCTHINAQTAAGKLTVPAMNVNDSVTKTKFDNLYMCRESIIDSLKRSTDVMFGGKQVV 81
             + G   +   + AGKL VPAMNVNDSVTK KFDNLY CRESI+D LKR+TDVMFGGKQVV
Sbjct:   250 VTGVHRLYQLSKAGKLCVPAMNVNDSVTKQKFDNLYCCRESILDGLKRTTDVMFGGKQVV 309

Query:    82 LCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATG 141
             +CGYGEVGKGCC +LK LG ++YITEIDPICALQACMDGF VVKLNEVIR VD+V+T TG
Sbjct:   310 VCGYGEVGKGCCAALKALGAIVYITEIDPICALQACMDGFRVVKLNEVIRQVDVVITCTG 369

Query:   142 NKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIV 201
             NKNVVTREH+D+MKN C+VCNMGHSNTEIDV SLRTP+LTWE+VRSQVDHVIWPDGKR+V
Sbjct:   370 NKNVVTREHLDRMKNSCIVCNMGHSNTEIDVTSLRTPELTWERVRSQVDHVIWPDGKRVV 429

Query:   202 LLAEGRLVNLSCSSLPSFVVSITACTQALALIELFNAPSGRYKSDVYLLPKKMDEYVASL 261
             LLAEGRL+NLSCS++P+FV+SITA TQALALIEL+NAP GRYK DVYLLPKKMDEYVASL
Sbjct:   430 LLAEGRLLNLSCSTVPTFVLSITATTQALALIELYNAPEGRYKQDVYLLPKKMDEYVASL 489

Query:   262 HLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYYS 295
             HLP+FDAHLTEL+D+QAKY+GLNK GPFKP+YYS
Sbjct:   490 HLPSFDAHLTELTDDQAKYLGLNKNGPFKPNYYS 523

GO:0044070 "regulation of anion transport" evidence=IEA

GO:0032412 "regulation of ion transmembrane transporter activity" evidence=IEA

GO:0031440 "regulation of mRNA 3'-end processing" evidence=IEA

GO:0010765 "positive regulation of sodium ion transport" evidence=IEA

GO:0006611 "protein export from nucleus" evidence=IEA

GO:0006378 "mRNA polyadenylation" evidence=IEA

GO:0004013 "adenosylhomocysteinase activity" evidence=IEA

GO:0006730 "one-carbon metabolic process" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

ZFIN|ZDB-GENE-070112-1522 zgc:158222 "zgc:158222" [Danio rerio (taxid:7955)]

 Score = 1126 (401.4 bits), Expect = 1.5e-123, Sum P(2) = 1.5e-123
 Identities = 204/280 (72%), Positives = 245/280 (87%)

Query:    15 KPLKNARIVGCTHINAQTAAGKLTVPAMNVNDSVTKTKFDNLYMCRESIIDSLKRSTDVM 74
             K +    I G   ++  + AGKL VPA+NVNDSVTK KFDNLY CRESI+DSLK++ D+M
Sbjct:   235 KGIVEESITGIHRLHHLSKAGKLCVPAINVNDSVTKQKFDNLYCCRESILDSLKKTADIM 294

Query:    75 FGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVD 134
             FGGKQVV+CGYGEVGKGC  +LK +G ++Y+TEIDPICALQACMDGF + KL++V+R VD
Sbjct:   295 FGGKQVVVCGYGEVGKGCSAALKAMGSIVYVTEIDPICALQACMDGFRLTKLSDVVRQVD 354

Query:   135 IVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIW 194
             +V+T TGNKNVV REHMD MKNGCVVCNMG SNTEI+V++L+TPDLTW+ VR+QVDH+IW
Sbjct:   355 MVITCTGNKNVVVREHMDVMKNGCVVCNMGRSNTEINVSALKTPDLTWQHVRAQVDHIIW 414

Query:   195 PDGKRIVLLAEGRLVNLSCSSLPSFVVSITACTQALALIELFNAPSGRYKSDVYLLPKKM 254
             PDGKR++LLAEGR++NLS S++P +V+SITA TQALALIELFNAP GRYK DVYLLPKK+
Sbjct:   415 PDGKRMILLAEGRVLNLSSSTVPIYVLSITATTQALALIELFNAPEGRYKQDVYLLPKKL 474

Query:   255 DEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYY 294
             DEYVASLHL TFDAHLTEL+D+QAKYMGL+K GPFKP+YY
Sbjct:   475 DEYVASLHLQTFDAHLTELTDDQAKYMGLSKNGPFKPNYY 514

GO:0004013 "adenosylhomocysteinase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006730 "one-carbon metabolic process" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0016787 "hydrolase activity" evidence=IEA

UNIPROTKB|F1MWH2 AHCYL1 "Adenosylhomocysteinase" [Bos taurus (taxid:9913)]

 Score = 1214 (432.4 bits), Expect = 1.7e-123, P = 1.7e-123
 Identities = 221/273 (80%), Positives = 249/273 (91%)

Query:    22 IVGCTHINAQTAAGKLTVPAMNVNDSVTKTKFDNLYMCRESIIDSLKRSTDVMFGGKQVV 81
             + G   +   + AGKL VPAMNVNDSVTK KFDNLY CRESI+D LKR+TDVMFGGKQVV
Sbjct:   256 VTGVHRLYQLSKAGKLCVPAMNVNDSVTKQKFDNLYCCRESILDGLKRTTDVMFGGKQVV 315

Query:    82 LCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATG 141
             +CGYGEVGKGCC +LK LG ++YITEIDPICALQACMDGF VVKLNEVIR VD+V+T TG
Sbjct:   316 VCGYGEVGKGCCAALKALGAIVYITEIDPICALQACMDGFRVVKLNEVIRQVDVVITCTG 375

Query:   142 NKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIV 201
             NKNVVTREH+D+MKN C+VCNMGHSNTEIDV SLRTP+LTWE+VRSQVDHVIWPDGKR+V
Sbjct:   376 NKNVVTREHLDRMKNSCIVCNMGHSNTEIDVTSLRTPELTWERVRSQVDHVIWPDGKRVV 435

Query:   202 LLAEGRLVNLSCSSLPSFVVSITACTQALALIELFNAPSGRYKSDVYLLPKKMDEYVASL 261
             LLAEGRL+NLSCS++P+FV+SITA TQALALIEL+NAP GRYK DVYLLPKKMDEYVASL
Sbjct:   436 LLAEGRLLNLSCSTVPTFVLSITATTQALALIELYNAPEGRYKQDVYLLPKKMDEYVASL 495

Query:   262 HLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYY 294
             HLP+FDAHLTEL+D+QAKY+GLNK GPFKP+YY
Sbjct:   496 HLPSFDAHLTELTDDQAKYLGLNKNGPFKPNYY 528

GO:0044070 "regulation of anion transport" evidence=IEA

GO:0032412 "regulation of ion transmembrane transporter activity" evidence=IEA

GO:0031440 "regulation of mRNA 3'-end processing" evidence=IEA

GO:0010765 "positive regulation of sodium ion transport" evidence=IEA

GO:0006611 "protein export from nucleus" evidence=IEA

GO:0006378 "mRNA polyadenylation" evidence=IEA

GO:0004013 "adenosylhomocysteinase activity" evidence=IEA

GO:0006730 "one-carbon metabolic process" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|E2REN0 AHCYL1 "Adenosylhomocysteinase" [Canis lupus familiaris (taxid:9615)]

 Score = 1214 (432.4 bits), Expect = 1.7e-123, P = 1.7e-123
 Identities = 221/273 (80%), Positives = 249/273 (91%)

Query:    22 IVGCTHINAQTAAGKLTVPAMNVNDSVTKTKFDNLYMCRESIIDSLKRSTDVMFGGKQVV 81
             + G   +   + AGKL VPAMNVNDSVTK KFDNLY CRESI+D LKR+TDVMFGGKQVV
Sbjct:   243 VTGVHRLYQLSKAGKLCVPAMNVNDSVTKQKFDNLYCCRESILDGLKRTTDVMFGGKQVV 302

Query:    82 LCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATG 141
             +CGYGEVGKGCC +LK LG ++YITEIDPICALQACMDGF VVKLNEVIR VD+V+T TG
Sbjct:   303 VCGYGEVGKGCCAALKALGAIVYITEIDPICALQACMDGFRVVKLNEVIRQVDVVITCTG 362

Query:   142 NKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIV 201
             NKNVVTREH+D+MKN C+VCNMGHSNTEIDV SLRTP+LTWE+VRSQVDHVIWPDGKR+V
Sbjct:   363 NKNVVTREHLDRMKNSCIVCNMGHSNTEIDVTSLRTPELTWERVRSQVDHVIWPDGKRVV 422

Query:   202 LLAEGRLVNLSCSSLPSFVVSITACTQALALIELFNAPSGRYKSDVYLLPKKMDEYVASL 261
             LLAEGRL+NLSCS++P+FV+SITA TQALALIEL+NAP GRYK DVYLLPKKMDEYVASL
Sbjct:   423 LLAEGRLLNLSCSTVPTFVLSITATTQALALIELYNAPEGRYKQDVYLLPKKMDEYVASL 482

Query:   262 HLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYY 294
             HLP+FDAHLTEL+D+QAKY+GLNK GPFKP+YY
Sbjct:   483 HLPSFDAHLTELTDDQAKYLGLNKNGPFKPNYY 515

GO:0004013 "adenosylhomocysteinase activity" evidence=IEA

GO:0006730 "one-carbon metabolic process" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|O43865 AHCYL1 "Putative adenosylhomocysteinase 2" [Homo sapiens (taxid:9606)]

 Score = 1214 (432.4 bits), Expect = 1.7e-123, P = 1.7e-123
 Identities = 221/273 (80%), Positives = 249/273 (91%)

Query:    22 IVGCTHINAQTAAGKLTVPAMNVNDSVTKTKFDNLYMCRESIIDSLKRSTDVMFGGKQVV 81
             + G   +   + AGKL VPAMNVNDSVTK KFDNLY CRESI+D LKR+TDVMFGGKQVV
Sbjct:   256 VTGVHRLYQLSKAGKLCVPAMNVNDSVTKQKFDNLYCCRESILDGLKRTTDVMFGGKQVV 315

Query:    82 LCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATG 141
             +CGYGEVGKGCC +LK LG ++YITEIDPICALQACMDGF VVKLNEVIR VD+V+T TG
Sbjct:   316 VCGYGEVGKGCCAALKALGAIVYITEIDPICALQACMDGFRVVKLNEVIRQVDVVITCTG 375

Query:   142 NKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIV 201
             NKNVVTREH+D+MKN C+VCNMGHSNTEIDV SLRTP+LTWE+VRSQVDHVIWPDGKR+V
Sbjct:   376 NKNVVTREHLDRMKNSCIVCNMGHSNTEIDVTSLRTPELTWERVRSQVDHVIWPDGKRVV 435

Query:   202 LLAEGRLVNLSCSSLPSFVVSITACTQALALIELFNAPSGRYKSDVYLLPKKMDEYVASL 261
             LLAEGRL+NLSCS++P+FV+SITA TQALALIEL+NAP GRYK DVYLLPKKMDEYVASL
Sbjct:   436 LLAEGRLLNLSCSTVPTFVLSITATTQALALIELYNAPEGRYKQDVYLLPKKMDEYVASL 495

Query:   262 HLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYY 294
             HLP+FDAHLTEL+D+QAKY+GLNK GPFKP+YY
Sbjct:   496 HLPSFDAHLTELTDDQAKYLGLNKNGPFKPNYY 528

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006730 "one-carbon metabolic process" evidence=IEA

GO:0004013 "adenosylhomocysteinase activity" evidence=IEA

GO:0006378 "mRNA polyadenylation" evidence=IEA

GO:0006611 "protein export from nucleus" evidence=IEA

GO:0010765 "positive regulation of sodium ion transport" evidence=IEA

GO:0031440 "regulation of mRNA 3'-end processing" evidence=IEA

GO:0032412 "regulation of ion transmembrane transporter activity" evidence=IEA

GO:0044070 "regulation of anion transport" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|F1S610 AHCYL1 "Adenosylhomocysteinase" [Sus scrofa (taxid:9823)]

 Score = 1214 (432.4 bits), Expect = 1.7e-123, P = 1.7e-123
 Identities = 221/273 (80%), Positives = 249/273 (91%)

Query:    22 IVGCTHINAQTAAGKLTVPAMNVNDSVTKTKFDNLYMCRESIIDSLKRSTDVMFGGKQVV 81
             + G   +   + AGKL VPAMNVNDSVTK KFDNLY CRESI+D LKR+TDVMFGGKQVV
Sbjct:   220 VTGVHRLYQLSKAGKLCVPAMNVNDSVTKQKFDNLYCCRESILDGLKRTTDVMFGGKQVV 279

Query:    82 LCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATG 141
             +CGYGEVGKGCC +LK LG ++YITEIDPICALQACMDGF VVKLNEVIR VD+V+T TG
Sbjct:   280 VCGYGEVGKGCCAALKALGAIVYITEIDPICALQACMDGFRVVKLNEVIRQVDVVITCTG 339

Query:   142 NKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIV 201
             NKNVVTREH+D+MKN C+VCNMGHSNTEIDV SLRTP+LTWE+VRSQVDHVIWPDGKR+V
Sbjct:   340 NKNVVTREHLDRMKNSCIVCNMGHSNTEIDVTSLRTPELTWERVRSQVDHVIWPDGKRVV 399

Query:   202 LLAEGRLVNLSCSSLPSFVVSITACTQALALIELFNAPSGRYKSDVYLLPKKMDEYVASL 261
             LLAEGRL+NLSCS++P+FV+SITA TQALALIEL+NAP GRYK DVYLLPKKMDEYVASL
Sbjct:   400 LLAEGRLLNLSCSTVPTFVLSITATTQALALIELYNAPEGRYKQDVYLLPKKMDEYVASL 459

Query:   262 HLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYY 294
             HLP+FDAHLTEL+D+QAKY+GLNK GPFKP+YY
Sbjct:   460 HLPSFDAHLTELTDDQAKYLGLNKNGPFKPNYY 492

GO:0044070 "regulation of anion transport" evidence=IEA

GO:0032412 "regulation of ion transmembrane transporter activity" evidence=IEA

GO:0031440 "regulation of mRNA 3'-end processing" evidence=IEA

GO:0010765 "positive regulation of sodium ion transport" evidence=IEA

GO:0006611 "protein export from nucleus" evidence=IEA

GO:0006378 "mRNA polyadenylation" evidence=IEA

GO:0004013 "adenosylhomocysteinase activity" evidence=IEA

GO:0006730 "one-carbon metabolic process" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

MGI|MGI:2385184 Ahcyl1 "S-adenosylhomocysteine hydrolase-like 1" [Mus musculus (taxid:10090)]

 Score = 1214 (432.4 bits), Expect = 1.7e-123, P = 1.7e-123
 Identities = 221/273 (80%), Positives = 249/273 (91%)

Query:    22 IVGCTHINAQTAAGKLTVPAMNVNDSVTKTKFDNLYMCRESIIDSLKRSTDVMFGGKQVV 81
             + G   +   + AGKL VPAMNVNDSVTK KFDNLY CRESI+D LKR+TDVMFGGKQVV
Sbjct:   256 VTGVHRLYQLSKAGKLCVPAMNVNDSVTKQKFDNLYCCRESILDGLKRTTDVMFGGKQVV 315

Query:    82 LCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATG 141
             +CGYGEVGKGCC +LK LG ++YITEIDPICALQACMDGF VVKLNEVIR VD+V+T TG
Sbjct:   316 VCGYGEVGKGCCAALKALGAIVYITEIDPICALQACMDGFRVVKLNEVIRQVDVVITCTG 375

Query:   142 NKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIV 201
             NKNVVTREH+D+MKN C+VCNMGHSNTEIDV SLRTP+LTWE+VRSQVDHVIWPDGKR+V
Sbjct:   376 NKNVVTREHLDRMKNSCIVCNMGHSNTEIDVTSLRTPELTWERVRSQVDHVIWPDGKRVV 435

Query:   202 LLAEGRLVNLSCSSLPSFVVSITACTQALALIELFNAPSGRYKSDVYLLPKKMDEYVASL 261
             LLAEGRL+NLSCS++P+FV+SITA TQALALIEL+NAP GRYK DVYLLPKKMDEYVASL
Sbjct:   436 LLAEGRLLNLSCSTVPTFVLSITATTQALALIELYNAPEGRYKQDVYLLPKKMDEYVASL 495

Query:   262 HLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYY 294
             HLP+FDAHLTEL+D+QAKY+GLNK GPFKP+YY
Sbjct:   496 HLPSFDAHLTELTDDQAKYLGLNKNGPFKPNYY 528

GO:0004013 "adenosylhomocysteinase activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0006378 "mRNA polyadenylation" evidence=IDA

GO:0006611 "protein export from nucleus" evidence=IDA

GO:0006730 "one-carbon metabolic process" evidence=IEA

GO:0010765 "positive regulation of sodium ion transport" evidence=IGI

GO:0016787 "hydrolase activity" evidence=IEA

GO:0031440 "regulation of mRNA 3'-end processing" evidence=IDA

GO:0032412 "regulation of ion transmembrane transporter activity" evidence=IGI

GO:0044070 "regulation of anion transport" evidence=IGI

RGD|1309768 Ahcyl1 "adenosylhomocysteinase-like 1" [Rattus norvegicus (taxid:10116)]

 Score = 1214 (432.4 bits), Expect = 1.7e-123, P = 1.7e-123
 Identities = 221/273 (80%), Positives = 249/273 (91%)

Query:    22 IVGCTHINAQTAAGKLTVPAMNVNDSVTKTKFDNLYMCRESIIDSLKRSTDVMFGGKQVV 81
             + G   +   + AGKL VPAMNVNDSVTK KFDNLY CRESI+D LKR+TDVMFGGKQVV
Sbjct:   255 VTGVHRLYQLSKAGKLCVPAMNVNDSVTKQKFDNLYCCRESILDGLKRTTDVMFGGKQVV 314

Query:    82 LCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATG 141
             +CGYGEVGKGCC +LK LG ++YITEIDPICALQACMDGF VVKLNEVIR VD+V+T TG
Sbjct:   315 VCGYGEVGKGCCAALKALGAIVYITEIDPICALQACMDGFRVVKLNEVIRQVDVVITCTG 374

Query:   142 NKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIV 201
             NKNVVTREH+D+MKN C+VCNMGHSNTEIDV SLRTP+LTWE+VRSQVDHVIWPDGKR+V
Sbjct:   375 NKNVVTREHLDRMKNSCIVCNMGHSNTEIDVTSLRTPELTWERVRSQVDHVIWPDGKRVV 434

Query:   202 LLAEGRLVNLSCSSLPSFVVSITACTQALALIELFNAPSGRYKSDVYLLPKKMDEYVASL 261
             LLAEGRL+NLSCS++P+FV+SITA TQALALIEL+NAP GRYK DVYLLPKKMDEYVASL
Sbjct:   435 LLAEGRLLNLSCSTVPTFVLSITATTQALALIELYNAPEGRYKQDVYLLPKKMDEYVASL 494

Query:   262 HLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYY 294
             HLP+FDAHLTEL+D+QAKY+GLNK GPFKP+YY
Sbjct:   495 HLPSFDAHLTELTDDQAKYLGLNKNGPFKPNYY 527

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004013 "adenosylhomocysteinase activity" evidence=IEA

GO:0006378 "mRNA polyadenylation" evidence=ISO

GO:0006611 "protein export from nucleus" evidence=ISO

GO:0006730 "one-carbon metabolic process" evidence=IEA

GO:0010765 "positive regulation of sodium ion transport" evidence=ISO

GO:0031440 "regulation of mRNA 3'-end processing" evidence=ISO

GO:0032412 "regulation of ion transmembrane transporter activity" evidence=ISO

GO:0044070 "regulation of anion transport" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
B9MD45	SAHH_ACIET	3, ., 3, ., 1, ., 1	0.5349	0.5092	0.5798	yes	N/A
Q7NZF7	SAHH_CHRVO	3, ., 3, ., 1, ., 1	0.5900	0.4741	0.5515	yes	N/A
Q3B0K7	SAHH_SYNS9	3, ., 3, ., 1, ., 1	0.5404	0.4944	0.5630	yes	N/A
Q7UZN3	SAHH_PROMP	3, ., 3, ., 1, ., 1	0.5598	0.4704	0.5402	yes	N/A
Q3A392	SAHH_PELCD	3, ., 3, ., 1, ., 1	0.5572	0.4778	0.5452	yes	N/A
Q62G22	SAHH_BURMA	3, ., 3, ., 1, ., 1	0.5400	0.5221	0.5983	yes	N/A
A9KD88	SAHH_COXBN	3, ., 3, ., 1, ., 1	0.5747	0.4741	0.5867	yes	N/A
Q3JY79	SAHH_BURP1	3, ., 3, ., 1, ., 1	0.5400	0.5221	0.5983	yes	N/A
Q63PT2	SAHH_BURPS	3, ., 3, ., 1, ., 1	0.5400	0.5221	0.5983	yes	N/A
Q2STU0	SAHH_BURTA	3, ., 3, ., 1, ., 1	0.5400	0.5221	0.5983	yes	N/A
A6T2Y9	SAHH_JANMA	3, ., 3, ., 1, ., 1	0.5440	0.4741	0.5365	yes	N/A
A1V8Z2	SAHH_BURMS	3, ., 3, ., 1, ., 1	0.5400	0.5221	0.5983	yes	N/A
Q82WL1	SAHH_NITEU	3, ., 3, ., 1, ., 1	0.5648	0.4723	0.5355	yes	N/A
Q7VUL8	SAHH_BORPE	3, ., 3, ., 1, ., 1	0.5139	0.5221	0.5995	yes	N/A
Q1CY84	SAHH_MYXXD	3, ., 3, ., 1, ., 1	0.5104	0.5073	0.5777	yes	N/A
A2S6W2	SAHH_BURM9	3, ., 3, ., 1, ., 1	0.5400	0.5221	0.5983	yes	N/A
Q96HN2	SAHH3_HUMAN	3, ., 3, ., 1, ., 1	0.8095	0.4852	0.4304	yes	N/A
Q68FL4	SAHH3_MOUSE	3, ., 3, ., 1, ., 1	0.8095	0.4852	0.4290	yes	N/A
Q0IDX7	SAHH_SYNS3	3, ., 3, ., 1, ., 1	0.5367	0.4944	0.5630	yes	N/A
A5GI30	SAHH_SYNPW	3, ., 3, ., 1, ., 1	0.5514	0.4944	0.5630	yes	N/A
Q318B6	SAHH_PROM9	3, ., 3, ., 1, ., 1	0.5598	0.4704	0.5402	yes	N/A
A3MQW7	SAHH_BURM7	3, ., 3, ., 1, ., 1	0.5400	0.5221	0.5983	yes	N/A
Q7V926	SAHH_PROMM	3, ., 3, ., 1, ., 1	0.5367	0.4944	0.5630	yes	N/A
B2T6X2	SAHH_BURPP	3, ., 3, ., 1, ., 1	0.5670	0.4741	0.5433	yes	N/A
A3PFB5	SAHH_PROM0	3, ., 3, ., 1, ., 1	0.5559	0.4704	0.5402	yes	N/A
A4G975	SAHH_HERAR	3, ., 3, ., 1, ., 1	0.5478	0.4741	0.5365	yes	N/A
C5CM29	SAHH_VARPS	3, ., 3, ., 1, ., 1	0.5104	0.5073	0.5741	yes	N/A
Q13T36	SAHH_BURXL	3, ., 3, ., 1, ., 1	0.5708	0.4741	0.5433	yes	N/A
Q83A77	SAHH_COXBU	3, ., 3, ., 1, ., 1	0.5708	0.4741	0.5867	yes	N/A
Q60CG8	SAHH_METCA	3, ., 3, ., 1, ., 1	0.5661	0.4944	0.5677	yes	N/A
A2SL00	SAHH_METPP	3, ., 3, ., 1, ., 1	0.5209	0.5073	0.5765	yes	N/A
A8G7D1	SAHH_PROM2	3, ., 3, ., 1, ., 1	0.5559	0.4704	0.5402	yes	N/A
Q3ANF4	SAHH_SYNSC	3, ., 3, ., 1, ., 1	0.5441	0.4944	0.5630	yes	N/A
A2C620	SAHH_PROM3	3, ., 3, ., 1, ., 1	0.5367	0.4944	0.5630	yes	N/A
B6J6H1	SAHH_COXB1	3, ., 3, ., 1, ., 1	0.5747	0.4741	0.5867	yes	N/A
Q7U9Y3	SAHH_SYNPX	3, ., 3, ., 1, ., 1	0.5404	0.4944	0.5630	yes	N/A
B6J3R0	SAHH_COXB2	3, ., 3, ., 1, ., 1	0.5708	0.4741	0.5867	yes	N/A
A3NER1	SAHH_BURP6	3, ., 3, ., 1, ., 1	0.5400	0.5221	0.5983	yes	N/A
A9BD69	SAHH_PROM4	3, ., 3, ., 1, ., 1	0.5477	0.4944	0.5630	yes	N/A
B2JIP4	SAHH_BURP8	3, ., 3, ., 1, ., 1	0.5785	0.4741	0.5433	yes	N/A
A1WXM7	SAHH_HALHL	3, ., 3, ., 1, ., 1	0.5588	0.4944	0.6232	yes	N/A
A3P0L8	SAHH_BURP0	3, ., 3, ., 1, ., 1	0.5400	0.5221	0.5983	yes	N/A
P61617	SAHH_GEOSL	3, ., 3, ., 1, ., 1	0.5261	0.5221	0.5957	yes	N/A
A1W3P0	SAHH_ACISJ	3, ., 3, ., 1, ., 1	0.5314	0.5092	0.5798	yes	N/A
A9C184	SAHH_DELAS	3, ., 3, ., 1, ., 1	0.5139	0.5073	0.5777	yes	N/A
Q0AEV8	SAHH_NITEC	3, ., 3, ., 1, ., 1	0.5687	0.4723	0.5355	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.3.1	0.691
3rd Layer	3.3.1.1	LOW CONFIDENCE prediction!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	542
smart00996	426	smart00996, AdoHcyase, S-adenosyl-L-homocysteine h	0.0
cd00401	402	cd00401, SAHH, S-Adenosylhomocysteine Hydrolase, N	1e-153
PRK05476	425	PRK05476, PRK05476, S-adenosyl-L-homocysteine hydr	1e-137
pfam05221	430	pfam05221, AdoHcyase, S-adenosyl-L-homocysteine hy	1e-133
PTZ00075	476	PTZ00075, PTZ00075, Adenosylhomocysteinase; Provis	1e-130
COG0499	420	COG0499, SAM1, S-adenosylhomocysteine hydrolase [C	1e-118
PLN02494	477	PLN02494, PLN02494, adenosylhomocysteinase	1e-103
TIGR00936	407	TIGR00936, ahcY, adenosylhomocysteinase	1e-100
pfam00670	162	pfam00670, AdoHcyase_NAD, S-adenosyl-L-homocystein	2e-98
smart00997	162	smart00997, AdoHcyase_NAD, S-adenosyl-L-homocystei	4e-97
smart00996	426	smart00996, AdoHcyase, S-adenosyl-L-homocysteine h	1e-66
smart00996	426	smart00996, AdoHcyase, S-adenosyl-L-homocysteine h	3e-62
pfam05221	430	pfam05221, AdoHcyase, S-adenosyl-L-homocysteine hy	2e-56
cd00401	402	cd00401, SAHH, S-Adenosylhomocysteine Hydrolase, N	6e-56
cd00401	402	cd00401, SAHH, S-Adenosylhomocysteine Hydrolase, N	1e-55
PRK05476	425	PRK05476, PRK05476, S-adenosyl-L-homocysteine hydr	1e-52
smart00997	162	smart00997, AdoHcyase_NAD, S-adenosyl-L-homocystei	5e-52
pfam00670	162	pfam00670, AdoHcyase_NAD, S-adenosyl-L-homocystein	1e-50
PRK05476	425	PRK05476, PRK05476, S-adenosyl-L-homocysteine hydr	4e-46
COG0499	420	COG0499, SAM1, S-adenosylhomocysteine hydrolase [C	3e-44
COG0499	420	COG0499, SAM1, S-adenosylhomocysteine hydrolase [C	4e-42
TIGR00936	407	TIGR00936, ahcY, adenosylhomocysteinase	2e-39
PTZ00075	476	PTZ00075, PTZ00075, Adenosylhomocysteinase; Provis	1e-36
PTZ00075	476	PTZ00075, PTZ00075, Adenosylhomocysteinase; Provis	1e-36
TIGR00936	407	TIGR00936, ahcY, adenosylhomocysteinase	2e-32
cd12154	310	cd12154, FDH_GDH_like, Formate/glycerate dehydroge	3e-31
pfam05221	430	pfam05221, AdoHcyase, S-adenosyl-L-homocysteine hy	2e-30
PLN02494	477	PLN02494, PLN02494, adenosylhomocysteinase	3e-27
PLN02494	477	PLN02494, PLN02494, adenosylhomocysteinase	5e-26
smart00996	426	smart00996, AdoHcyase, S-adenosyl-L-homocysteine h	5e-13
pfam05221	430	pfam05221, AdoHcyase, S-adenosyl-L-homocysteine hy	1e-11
cd00401	402	cd00401, SAHH, S-Adenosylhomocysteine Hydrolase, N	3e-10
PRK05476	425	PRK05476, PRK05476, S-adenosyl-L-homocysteine hydr	2e-08
PTZ00075	476	PTZ00075, PTZ00075, Adenosylhomocysteinase; Provis	9e-08
cd12154	310	cd12154, FDH_GDH_like, Formate/glycerate dehydroge	3e-07
COG0499	420	COG0499, SAM1, S-adenosylhomocysteine hydrolase [C	4e-07
TIGR00936	407	TIGR00936, ahcY, adenosylhomocysteinase	1e-06
pfam02826	175	pfam02826, 2-Hacid_dh_C, D-isomer specific 2-hydro	6e-06
smart01002	149	smart01002, AlaDh_PNT_C, Alanine dehydrogenase/PNT	1e-05
pfam01262	150	pfam01262, AlaDh_PNT_C, Alanine dehydrogenase/PNT,	3e-05
cd12171	310	cd12171, 2-Hacid_dh_10, Putative D-isomer specific	5e-05
COG0111	324	COG0111, SerA, Phosphoglycerate dehydrogenase and	2e-04
cd05198	302	cd05198, formate_dh_like, Formate/glycerate and re	3e-04
cd05303	301	cd05303, PGDH_2, Phosphoglycerate dehydrogenase (P	3e-04
PLN02494	477	PLN02494, PLN02494, adenosylhomocysteinase	7e-04
cd12154	310	cd12154, FDH_GDH_like, Formate/glycerate dehydroge	7e-04
PRK00045	423	PRK00045, hemA, glutamyl-tRNA reductase; Reviewed	8e-04
cd05300	313	cd05300, 2-Hacid_dh_1, Putative D-isomer specific	9e-04
cd12177	321	cd12177, 2-Hacid_dh_12, Putative D-isomer specific	9e-04
pfam02254	116	pfam02254, TrkA_N, TrkA-N domain	0.001
cd12157	318	cd12157, PTDH, Thermostable Phosphite Dehydrogenas	0.001
PLN02928	347	PLN02928, PLN02928, oxidoreductase family protein	0.002

>gnl|CDD|214963 smart00996, AdoHcyase, S-adenosyl-L-homocysteine hydrolase

 Score =  517 bits (1335), Expect = 0.0
 Identities = 164/264 (62%), Positives = 200/264 (75%), Gaps = 3/264 (1%)

Query: 33  AAGKLTVPAMNVNDSVTKTKFDNLYMCRESIIDSLKRSTDVMFGGKQVVLCGYGEVGKGC 92
             GKL  PA+NVNDSVTK+KFDNLY CRES++D +KR+TDVM  GK  V+CGYG+VGKGC
Sbjct: 163 KKGKLLFPAINVNDSVTKSKFDNLYGCRESLVDGIKRATDVMIAGKVAVVCGYGDVGKGC 222

Query: 93  CQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHMD 152
            QSL+G G  + +TEIDPICALQA MDGF VV + EV    DI VT TGNK+V+TREHM 
Sbjct: 223 AQSLRGQGARVIVTEIDPICALQAAMDGFEVVTMEEVAPQADIFVTTTGNKDVITREHMR 282

Query: 153 KMKNGCVVCNMGHSNTEIDVNSLRT-PDLTWEKVRSQVDHVIWPDGKRIVLLAEGRLVNL 211
            MK+G +VCN+GH + EIDV SLR  P L WE ++ QVDH+ +PDGKRI+LLAEGRLVNL
Sbjct: 283 AMKDGAIVCNIGHFDNEIDVASLRNNPGLKWENIKPQVDHITFPDGKRIILLAEGRLVNL 342

Query: 212 SCSSL-PSFVVSITACTQALALIELFNAPSGRYKSDVYLLPKKMDEYVASLHLPTFDAHL 270
            C++  PSFV+S +   Q LA IELF  P G+YK+ VY+LPKK+DE VA LHL    A L
Sbjct: 343 GCATGHPSFVMSNSFTNQVLAQIELFTKP-GKYKNGVYVLPKKLDEKVARLHLEKLGAKL 401

Query: 271 TELSDEQAKYMGLNKAGPFKPSYY 294
           T+L+ EQA Y+G+   GPFKP +Y
Sbjct: 402 TKLTKEQADYIGVPVEGPFKPDHY 425

Length = 426

>gnl|CDD|240619 cd00401, SAHH, S-Adenosylhomocysteine Hydrolase, NAD-binding and catalytic domains

 Score =  443 bits (1141), Expect = e-153
 Identities = 132/280 (47%), Positives = 181/280 (64%), Gaps = 10/280 (3%)

Query: 14  DKPLKNARIVGCT--------HINAQTAAGKLTVPAMNVNDSVTKTKFDNLYMCRESIID 65
            +P    +I+G +         + A    GKL  PA+ VND+VTK KFDN Y   +S ID
Sbjct: 124 KRPDLLKKIIGGSEETTTGVHRLRAMEKEGKLLFPAIAVNDAVTKHKFDNRYGTGQSTID 183

Query: 66  SLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVK 125
            +KR+T+V+  GK VV+ GYG VGKGC    +GLG  + +TE+DPICALQA MDGF V+ 
Sbjct: 184 GIKRATNVLIAGKVVVVAGYGWVGKGCAMRARGLGARVIVTEVDPICALQAAMDGFEVMP 243

Query: 126 LNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKV 185
           + E  +  DI VTATGNK+V+  EH +KMK+G ++CN GH + EIDV +L    +   ++
Sbjct: 244 MEEAAKIGDIFVTATGNKDVIRGEHFEKMKDGAILCNAGHFDVEIDVAALEELAVEKREI 303

Query: 186 RSQVDHVIWPDGKRIVLLAEGRLVNLSC-SSLPSFVVSITACTQALALIELFNAPSGRYK 244
           R QVD    PDG+RI+LLAEGRLVNL+C +  PSFV+ ++   QALA IEL+     + +
Sbjct: 304 RPQVDEYTLPDGRRIILLAEGRLVNLACATGHPSFVMDMSFANQALAQIELWKNR-DKLE 362

Query: 245 SDVYLLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLN 284
             VY+LPK++DE VA L L      L +L++EQA+Y+G  
Sbjct: 363 PGVYVLPKELDEEVARLKLEALGIKLDKLTEEQAEYLGSW 402

S-adenosyl-L-homocysteine hydrolase (SAHH, AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homotetramers, with each monomer binding one molecule of NAD+. Length = 402

>gnl|CDD|235488 PRK05476, PRK05476, S-adenosyl-L-homocysteine hydrolase; Provisional

 Score =  403 bits (1038), Expect = e-137
 Identities = 137/259 (52%), Positives = 182/259 (70%), Gaps = 2/259 (0%)

Query: 33  AAGKLTVPAMNVNDSVTKTKFDNLYMCRESIIDSLKRSTDVMFGGKQVVLCGYGEVGKGC 92
             G L  PA+NVNDSVTK+KFDN Y   ES++D +KR+T+V+  GK VV+ GYG+VGKGC
Sbjct: 168 KDGALKFPAINVNDSVTKSKFDNRYGTGESLLDGIKRATNVLIAGKVVVVAGYGDVGKGC 227

Query: 93  CQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHMD 152
            Q L+GLG  + +TE+DPICALQA MDGF V+ + E     DI VTATGNK+V+T EHM+
Sbjct: 228 AQRLRGLGARVIVTEVDPICALQAAMDGFRVMTMEEAAELGDIFVTATGNKDVITAEHME 287

Query: 153 KMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIVLLAEGRLVNLS 212
            MK+G ++ N+GH + EIDV +L    + W +++ QVD    PDGKRI+LLAEGRLVNL 
Sbjct: 288 AMKDGAILANIGHFDNEIDVAALEELAVKWREIKPQVDEYTLPDGKRIILLAEGRLVNLG 347

Query: 213 CSS-LPSFVVSITACTQALALIELFNAPSGRYKSDVYLLPKKMDEYVASLHLPTFDAHLT 271
            ++  PS V+ ++   QALA IELF    G+ +  VY+LPK++DE VA L L      L 
Sbjct: 348 AATGHPSEVMDMSFANQALAQIELFTNR-GKLEPGVYVLPKELDEEVARLKLKALGVKLD 406

Query: 272 ELSDEQAKYMGLNKAGPFK 290
           EL++EQA+Y+G+   GPFK
Sbjct: 407 ELTEEQAEYIGVWVEGPFK 425

Length = 425

>gnl|CDD|218507 pfam05221, AdoHcyase, S-adenosyl-L-homocysteine hydrolase

 Score =  394 bits (1013), Expect = e-133
 Identities = 139/264 (52%), Positives = 182/264 (68%), Gaps = 2/264 (0%)

Query: 33  AAGKLTVPAMNVNDSVTKTKFDNLYMCRESIIDSLKRSTDVMFGGKQVVLCGYGEVGKGC 92
             GKL  PA+NVNDSVTK+KFDNLY CRES+ D +KR+TDVM  GK  V+CGYG+VGKGC
Sbjct: 166 KKGKLLFPAINVNDSVTKSKFDNLYGCRESLPDGIKRATDVMIAGKVAVVCGYGDVGKGC 225

Query: 93  CQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHMD 152
             SL+G G  + +TEIDPICALQA M+G+ VV L EV++  DI VT TG  +++   H  
Sbjct: 226 AASLRGQGARVIVTEIDPICALQAAMEGYQVVTLEEVVKDADIFVTTTGCVDIIVGRHFM 285

Query: 153 KMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIVLLAEGRLVNLS 212
            MK   +VCN+GH + EIDV  L         ++ QVD    P+G+RI+LLAEGRL+NL 
Sbjct: 286 NMKKDAIVCNIGHFDCEIDVGWLNYNAKKITNIKPQVDRYTLPNGRRIILLAEGRLLNLG 345

Query: 213 CSS-LPSFVVSITACTQALALIELFNAP-SGRYKSDVYLLPKKMDEYVASLHLPTFDAHL 270
           C++  PSFV+S +   Q LA IEL+    +G+Y+  VY+LPK +DE VA LHL      L
Sbjct: 346 CATGHPSFVMSNSFTNQVLAQIELWTKRDTGKYEVGVYVLPKHLDEKVARLHLGKLGVKL 405

Query: 271 TELSDEQAKYMGLNKAGPFKPSYY 294
           T+L+D+QA+Y+G+   GPFKP +Y
Sbjct: 406 TKLTDKQAEYIGVPVEGPFKPDHY 429

Length = 430

>gnl|CDD|240258 PTZ00075, PTZ00075, Adenosylhomocysteinase; Provisional

 Score =  387 bits (995), Expect = e-130
 Identities = 146/274 (53%), Positives = 195/274 (71%), Gaps = 3/274 (1%)

Query: 24  GCTHINAQTAAGKLTVPAMNVNDSVTKTKFDNLYMCRESIIDSLKRSTDVMFGGKQVVLC 83
           G   +      G+L  PA+NVNDSVTK+KFDN+Y CR S+ID + R+TDVM  GK VV+C
Sbjct: 201 GVHRLYKMLKKGELLFPAINVNDSVTKSKFDNIYGCRHSLIDGIFRATDVMIAGKTVVVC 260

Query: 84  GYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNK 143
           GYG+VGKGC Q+L+G G  + +TEIDPICALQA M+G+ VV L +V+ T DI VTATGNK
Sbjct: 261 GYGDVGKGCAQALRGFGARVVVTEIDPICALQAAMEGYQVVTLEDVVETADIFVTATGNK 320

Query: 144 NVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRT-PDLTWEKVRSQVDHVIWPDGKRIVL 202
           +++T EHM +MKN  +V N+GH + EI V  L   P +   +++ QVD   +PDGK I+L
Sbjct: 321 DIITLEHMRRMKNNAIVGNIGHFDNEIQVAELEAYPGIEIVEIKPQVDRYTFPDGKGIIL 380

Query: 203 LAEGRLVNLSCSS-LPSFVVSITACTQALALIELF-NAPSGRYKSDVYLLPKKMDEYVAS 260
           LAEGRLVNL C++  PSFV+S +   Q LA IEL+ N  +G+Y + VY LPK++DE VA 
Sbjct: 381 LAEGRLVNLGCATGHPSFVMSNSFTNQVLAQIELWENRDTGKYPNGVYKLPKELDEKVAR 440

Query: 261 LHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYY 294
           LHL    A LT+L+D+QA+Y+G+   GP+K  +Y
Sbjct: 441 LHLKKLGAKLTKLTDKQAEYIGVPVDGPYKSDHY 474

Length = 476

>gnl|CDD|223573 COG0499, SAM1, S-adenosylhomocysteine hydrolase [Coenzyme metabolism]

 Score =  355 bits (912), Expect = e-118
 Identities = 124/257 (48%), Positives = 170/257 (66%), Gaps = 2/257 (0%)

Query: 33  AAGKLTVPAMNVNDSVTKTKFDNLYMCRESIIDSLKRSTDVMFGGKQVVLCGYGEVGKGC 92
             G L  PA+NVNDSVTK+ FDN Y   +S++D + R+T+V+  GK VV+ GYG VG+G 
Sbjct: 165 KDGVLKFPAINVNDSVTKSLFDNRYGTGQSLLDGILRATNVLLAGKNVVVAGYGWVGRGI 224

Query: 93  CQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHMD 152
              L+G+G  + +TE+DPI AL+A MDGF V+ + E  +T DI VTATGNK+V+ +EH +
Sbjct: 225 AMRLRGMGARVIVTEVDPIRALEAAMDGFRVMTMEEAAKTGDIFVTATGNKDVIRKEHFE 284

Query: 153 KMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIVLLAEGRLVNLS 212
           KMK+G ++ N GH + EIDV  L    +   +VR QVD    PDGKRI+LLAEGRLVNL+
Sbjct: 285 KMKDGAILANAGHFDVEIDVAGLEELAVEKREVRPQVDEYELPDGKRIILLAEGRLVNLA 344

Query: 213 CSS-LPSFVVSITACTQALALIELFNAPSGRYKSDVYLLPKKMDEYVASLHLPTFDAHLT 271
            ++  PS V+ ++   QALA I L     G+ +  VY LPK++DE VA L L      L 
Sbjct: 345 AATGHPSEVMDMSFANQALAQIYLVKNH-GKLEPGVYRLPKELDEEVARLKLEAMGIELD 403

Query: 272 ELSDEQAKYMGLNKAGP 288
           EL++EQA+Y+G  + G 
Sbjct: 404 ELTEEQAEYLGSWEEGT 420

Length = 420

>gnl|CDD|178111 PLN02494, PLN02494, adenosylhomocysteinase

 Score =  317 bits (814), Expect = e-103
 Identities = 135/266 (50%), Positives = 185/266 (69%), Gaps = 4/266 (1%)

Query: 33  AAGKLTVPAMNVNDSVTKTKFDNLYMCRESIIDSLKRSTDVMFGGKQVVLCGYGEVGKGC 92
             G L  PA+NVNDSVTK+KFDNLY CR S+ D L R+TDVM  GK  V+CGYG+VGKGC
Sbjct: 210 KNGTLLFPAINVNDSVTKSKFDNLYGCRHSLPDGLMRATDVMIAGKVAVICGYGDVGKGC 269

Query: 93  CQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHMD 152
             ++K  G  + +TEIDPICALQA M+G+ V+ L +V+   DI VT TGNK+++  +HM 
Sbjct: 270 AAAMKAAGARVIVTEIDPICALQALMEGYQVLTLEDVVSEADIFVTTTGNKDIIMVDHMR 329

Query: 153 KMKNGCVVCNMGHSNTEIDVNSLRT-PDLTWEKVRSQVDHVIWPDGKR-IVLLAEGRLVN 210
           KMKN  +VCN+GH + EID+  L T P +    ++ Q D  ++PD    I++LAEGRL+N
Sbjct: 330 KMKNNAIVCNIGHFDNEIDMLGLETYPGVKRITIKPQTDRWVFPDTGSGIIVLAEGRLMN 389

Query: 211 LSCSS-LPSFVVSITACTQALALIELFNA-PSGRYKSDVYLLPKKMDEYVASLHLPTFDA 268
           L C++  PSFV+S +   Q +A +EL+N   SG+Y+  VY+LPK +DE VA+LHL    A
Sbjct: 390 LGCATGHPSFVMSCSFTNQVIAQLELWNEKKSGKYEKKVYVLPKHLDEKVAALHLGKLGA 449

Query: 269 HLTELSDEQAKYMGLNKAGPFKPSYY 294
            LT+LS +QA Y+ +   GP+KP++Y
Sbjct: 450 KLTKLSKDQADYINVPVEGPYKPAHY 475

Length = 477

>gnl|CDD|213572 TIGR00936, ahcY, adenosylhomocysteinase

 Score =  308 bits (792), Expect = e-100
 Identities = 117/266 (43%), Positives = 164/266 (61%), Gaps = 2/266 (0%)

Query: 24  GCTHINAQTAAGKLTVPAMNVNDSVTKTKFDNLYMCRESIIDSLKRSTDVMFGGKQVVLC 83
           G   + A  A G L  PA+NVND+ TK+ FDN Y   +S ID + R+T+++  GK VV+ 
Sbjct: 143 GVIRLRAMEAEGVLKFPAINVNDAYTKSLFDNRYGTGQSTIDGILRATNLLIAGKTVVVA 202

Query: 84  GYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNK 143
           GYG  GKG     +G+G  + +TE+DPI AL+A MDGF V+ + E  +  DI +TATGNK
Sbjct: 203 GYGWCGKGIAMRARGMGARVIVTEVDPIRALEAAMDGFRVMTMEEAAKIGDIFITATGNK 262

Query: 144 NVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIVLL 203
           +V+  EH + MK+G +V N+GH + EIDV +L    +    VR QVD  I  DG+RI LL
Sbjct: 263 DVIRGEHFENMKDGAIVANIGHFDVEIDVKALEELAVEKVNVRPQVDEYILKDGRRIYLL 322

Query: 204 AEGRLVNLSCSS-LPSFVVSITACTQALALIELFNAPSGRYKSDVYLLPKKMDEYVASLH 262
           AEGRLVNL+ +   PS V+ ++   QALA   L+     + +  VY LPK++DE VA L 
Sbjct: 323 AEGRLVNLAAAEGHPSEVMDMSFANQALAAEYLWKNH-DKLEPGVYRLPKELDEMVARLK 381

Query: 263 LPTFDAHLTELSDEQAKYMGLNKAGP 288
           L      + EL++EQ +Y+G  + G 
Sbjct: 382 LEAMGIEIDELTEEQKEYLGSWEEGT 407

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704) [Energy metabolism, Amino acids and amines]. Length = 407

>gnl|CDD|109716 pfam00670, AdoHcyase_NAD, S-adenosyl-L-homocysteine hydrolase, NAD binding domain

 Score =  295 bits (756), Expect = 2e-98
 Identities = 99/161 (61%), Positives = 120/161 (74%)

Query: 55  NLYMCRESIIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICAL 114
           NLY CRES+ID +KR+TDVM  GK  V+CGYG+VGKGC  SLKG G  + +TEIDPICAL
Sbjct: 1   NLYGCRESLIDGIKRATDVMIAGKVAVVCGYGDVGKGCAASLKGQGARVIVTEIDPICAL 60

Query: 115 QACMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNS 174
           QA M+GF VV L EV++  DI VT TGNK+++T EHM KMKN  +VCN+GH + EIDV  
Sbjct: 61  QAAMEGFQVVTLEEVVKKADIFVTTTGNKDIITGEHMAKMKNDAIVCNIGHFDNEIDVAW 120

Query: 175 LRTPDLTWEKVRSQVDHVIWPDGKRIVLLAEGRLVNLSCSS 215
           L T    WE ++ QVD    PDGK I+LLAEGRLVNL C++
Sbjct: 121 LNTNGKKWENIKPQVDRYTLPDGKHIILLAEGRLVNLGCAT 161

Length = 162

>gnl|CDD|198065 smart00997, AdoHcyase_NAD, S-adenosyl-L-homocysteine hydrolase, NAD binding domain

 Score =  291 bits (747), Expect = 4e-97
 Identities = 85/160 (53%), Positives = 111/160 (69%)

Query: 55  NLYMCRESIIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICAL 114
           N Y   ES++D + R+T+V+  GK VV+ GYG+VGKG    L+GLG  + +TEIDPI AL
Sbjct: 1   NRYGTGESLLDGILRATNVLLAGKNVVVAGYGDVGKGVAARLRGLGARVIVTEIDPIRAL 60

Query: 115 QACMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNS 174
           +A MDGF V+K+ E  +  DI VTATGNK+V+TREH   MK+G ++ N GH + EIDV +
Sbjct: 61  EAAMDGFEVMKMEEAAKRADIFVTATGNKDVITREHFRAMKDGAILANAGHFDVEIDVAA 120

Query: 175 LRTPDLTWEKVRSQVDHVIWPDGKRIVLLAEGRLVNLSCS 214
           L    +   +VR QVD    PDGKRI LLAEGRLVNL+ +
Sbjct: 121 LEELAVEKREVRPQVDEYTLPDGKRIYLLAEGRLVNLAAA 160

Length = 162

>gnl|CDD|214963 smart00996, AdoHcyase, S-adenosyl-L-homocysteine hydrolase

 Score =  221 bits (566), Expect = 1e-66
 Identities = 70/108 (64%), Positives = 87/108 (80%), Gaps = 3/108 (2%)

Query: 437 TGLPVFAWRGETEEDFWWCIDKCVN---SWQPNMILDDGGDATHWMLKKYPTMFKAIKGI 493
            G+PVFAW+GET E++WWCI++ +     W PNMILDDGGDAT  + KKYP M K I+G+
Sbjct: 88  AGVPVFAWKGETLEEYWWCIEQTLTWPDGWGPNMILDDGGDATLLVHKKYPRMLKKIRGV 147

Query: 494 VEESLTGVHRLYQLSKAGKLTVPAMNVNDSVTKTKFDNLYMCRESIID 541
            EE+ TGVHRLYQ++K GKL  PA+NVNDSVTK+KFDNLY CRES++D
Sbjct: 148 SEETTTGVHRLYQMAKKGKLLFPAINVNDSVTKSKFDNLYGCRESLVD 195

Length = 426

>gnl|CDD|214963 smart00996, AdoHcyase, S-adenosyl-L-homocysteine hydrolase

 Score =  210 bits (536), Expect = 3e-62
 Identities = 68/114 (59%), Positives = 85/114 (74%), Gaps = 2/114 (1%)

Query: 295 SMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLR 354
           +MDGF VV + EV    DI VT TGNK+V+TREHM  MK+G +VCN+GH + EIDV SLR
Sbjct: 247 AMDGFEVVTMEEVAPQADIFVTTTGNKDVITREHMRAMKDGAIVCNIGHFDNEIDVASLR 306

Query: 355 T-PDLTWEKVRSQVDHVIWPDGKRIVLLAEGRLVNLSCSSL-PSFVVSITACTQ 406
             P L WE ++ QVDH+ +PDGKRI+LLAEGRLVNL C++  PSFV+S +   Q
Sbjct: 307 NNPGLKWENIKPQVDHITFPDGKRIILLAEGRLVNLGCATGHPSFVMSNSFTNQ 360

Length = 426

>gnl|CDD|218507 pfam05221, AdoHcyase, S-adenosyl-L-homocysteine hydrolase

 Score =  194 bits (495), Expect = 2e-56
 Identities = 66/108 (61%), Positives = 83/108 (76%), Gaps = 3/108 (2%)

Query: 437 TGLPVFAWRGETEEDFWWCIDKCV---NSWQPNMILDDGGDATHWMLKKYPTMFKAIKGI 493
            G+PVFAW+GET E++WWCI++ +   +   PNMILDDGGDAT  + KKYP     I+G+
Sbjct: 91  AGVPVFAWKGETLEEYWWCIERALTFKDGQGPNMILDDGGDATLLIHKKYPQYLAGIRGV 150

Query: 494 VEESLTGVHRLYQLSKAGKLTVPAMNVNDSVTKTKFDNLYMCRESIID 541
            EE+ TGVHRLY++ K GKL  PA+NVNDSVTK+KFDNLY CRES+ D
Sbjct: 151 SEETTTGVHRLYKMLKKGKLLFPAINVNDSVTKSKFDNLYGCRESLPD 198

Length = 430

>gnl|CDD|240619 cd00401, SAHH, S-Adenosylhomocysteine Hydrolase, NAD-binding and catalytic domains

 Score =  192 bits (491), Expect = 6e-56
 Identities = 58/105 (55%), Positives = 74/105 (70%), Gaps = 1/105 (0%)

Query: 437 TGLPVFAWRGETEEDFWWCIDKCVNSWQPNMILDDGGDATHWMLKKYPTMFKAIKGIVEE 496
            G+PVFAW+GETEE++WWCI++ +    PN+I+DDGGD TH +  K P + K I G  EE
Sbjct: 80  AGIPVFAWKGETEEEYWWCIEQAL-DHGPNLIIDDGGDLTHLLHTKRPDLLKKIIGGSEE 138

Query: 497 SLTGVHRLYQLSKAGKLTVPAMNVNDSVTKTKFDNLYMCRESIID 541
           + TGVHRL  + K GKL  PA+ VND+VTK KFDN Y   +S ID
Sbjct: 139 TTTGVHRLRAMEKEGKLLFPAIAVNDAVTKHKFDNRYGTGQSTID 183

S-adenosyl-L-homocysteine hydrolase (SAHH, AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homotetramers, with each monomer binding one molecule of NAD+. Length = 402

>gnl|CDD|240619 cd00401, SAHH, S-Adenosylhomocysteine Hydrolase, NAD-binding and catalytic domains

 Score =  191 bits (489), Expect = 1e-55
 Identities = 56/112 (50%), Positives = 77/112 (68%), Gaps = 1/112 (0%)

Query: 296 MDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRT 355
           MDGF V+ + E  +  DI VTATGNK+V+  EH +KMK+G ++CN GH + EIDV +L  
Sbjct: 236 MDGFEVMPMEEAAKIGDIFVTATGNKDVIRGEHFEKMKDGAILCNAGHFDVEIDVAALEE 295

Query: 356 PDLTWEKVRSQVDHVIWPDGKRIVLLAEGRLVNLSC-SSLPSFVVSITACTQ 406
             +   ++R QVD    PDG+RI+LLAEGRLVNL+C +  PSFV+ ++   Q
Sbjct: 296 LAVEKREIRPQVDEYTLPDGRRIILLAEGRLVNLACATGHPSFVMDMSFANQ 347

S-adenosyl-L-homocysteine hydrolase (SAHH, AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homotetramers, with each monomer binding one molecule of NAD+. Length = 402

>gnl|CDD|235488 PRK05476, PRK05476, S-adenosyl-L-homocysteine hydrolase; Provisional

 Score =  184 bits (469), Expect = 1e-52
 Identities = 58/104 (55%), Positives = 77/104 (74%)

Query: 438 GLPVFAWRGETEEDFWWCIDKCVNSWQPNMILDDGGDATHWMLKKYPTMFKAIKGIVEES 497
           G+PVFAW+GET E++W CI++ ++   PNMILDDGGD T  +  + P +   IKG+ EE+
Sbjct: 97  GIPVFAWKGETLEEYWECIERALDGHGPNMILDDGGDLTLLVHTERPELLANIKGVTEET 156

Query: 498 LTGVHRLYQLSKAGKLTVPAMNVNDSVTKTKFDNLYMCRESIID 541
            TGVHRLY ++K G L  PA+NVNDSVTK+KFDN Y   ES++D
Sbjct: 157 TTGVHRLYAMAKDGALKFPAINVNDSVTKSKFDNRYGTGESLLD 200

Length = 425

>gnl|CDD|198065 smart00997, AdoHcyase_NAD, S-adenosyl-L-homocysteine hydrolase, NAD binding domain

 Score =  174 bits (443), Expect = 5e-52
 Identities = 53/97 (54%), Positives = 67/97 (69%)

Query: 296 MDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRT 355
           MDGF V+K+ E  +  DI VTATGNK+V+TREH   MK+G ++ N GH + EIDV +L  
Sbjct: 64  MDGFEVMKMEEAAKRADIFVTATGNKDVITREHFRAMKDGAILANAGHFDVEIDVAALEE 123

Query: 356 PDLTWEKVRSQVDHVIWPDGKRIVLLAEGRLVNLSCS 392
             +   +VR QVD    PDGKRI LLAEGRLVNL+ +
Sbjct: 124 LAVEKREVRPQVDEYTLPDGKRIYLLAEGRLVNLAAA 160

Length = 162

>gnl|CDD|109716 pfam00670, AdoHcyase_NAD, S-adenosyl-L-homocysteine hydrolase, NAD binding domain

 Score =  170 bits (434), Expect = 1e-50
 Identities = 56/99 (56%), Positives = 71/99 (71%)

Query: 295 SMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLR 354
           +M+GF VV L EV++  DI VT TGNK+++T EHM KMKN  +VCN+GH + EIDV  L 
Sbjct: 63  AMEGFQVVTLEEVVKKADIFVTTTGNKDIITGEHMAKMKNDAIVCNIGHFDNEIDVAWLN 122

Query: 355 TPDLTWEKVRSQVDHVIWPDGKRIVLLAEGRLVNLSCSS 393
           T    WE ++ QVD    PDGK I+LLAEGRLVNL C++
Sbjct: 123 TNGKKWENIKPQVDRYTLPDGKHIILLAEGRLVNLGCAT 161

Length = 162

>gnl|CDD|235488 PRK05476, PRK05476, S-adenosyl-L-homocysteine hydrolase; Provisional

 Score =  166 bits (424), Expect = 4e-46
 Identities = 54/108 (50%), Positives = 75/108 (69%), Gaps = 1/108 (0%)

Query: 296 MDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRT 355
           MDGF V+ + E     DI VTATGNK+V+T EHM+ MK+G ++ N+GH + EIDV +L  
Sbjct: 253 MDGFRVMTMEEAAELGDIFVTATGNKDVITAEHMEAMKDGAILANIGHFDNEIDVAALEE 312

Query: 356 PDLTWEKVRSQVDHVIWPDGKRIVLLAEGRLVNLSCSS-LPSFVVSIT 402
             + W +++ QVD    PDGKRI+LLAEGRLVNL  ++  PS V+ ++
Sbjct: 313 LAVKWREIKPQVDEYTLPDGKRIILLAEGRLVNLGAATGHPSEVMDMS 360

Length = 425

>gnl|CDD|223573 COG0499, SAM1, S-adenosylhomocysteine hydrolase [Coenzyme metabolism]

 Score =  161 bits (410), Expect = 3e-44
 Identities = 55/104 (52%), Positives = 74/104 (71%), Gaps = 1/104 (0%)

Query: 438 GLPVFAWRGETEEDFWWCIDKCVNSWQPNMILDDGGDATHWMLKKYPTMFKAIKGIVEES 497
           G+PVFAW+GET E+++  ID+ V  W+PN+I+DDGGD T  +  + P +  AIKG  EE+
Sbjct: 95  GIPVFAWKGETLEEYYEAIDQ-VLDWEPNIIIDDGGDLTKLVHLERPELLDAIKGGTEET 153

Query: 498 LTGVHRLYQLSKAGKLTVPAMNVNDSVTKTKFDNLYMCRESIID 541
            TGVHRL  + K G L  PA+NVNDSVTK+ FDN Y   +S++D
Sbjct: 154 TTGVHRLRAMEKDGVLKFPAINVNDSVTKSLFDNRYGTGQSLLD 197

Length = 420

>gnl|CDD|223573 COG0499, SAM1, S-adenosylhomocysteine hydrolase [Coenzyme metabolism]

 Score =  155 bits (394), Expect = 4e-42
 Identities = 55/108 (50%), Positives = 75/108 (69%), Gaps = 1/108 (0%)

Query: 296 MDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRT 355
           MDGF V+ + E  +T DI VTATGNK+V+ +EH +KMK+G ++ N GH + EIDV  L  
Sbjct: 250 MDGFRVMTMEEAAKTGDIFVTATGNKDVIRKEHFEKMKDGAILANAGHFDVEIDVAGLEE 309

Query: 356 PDLTWEKVRSQVDHVIWPDGKRIVLLAEGRLVNLSCSS-LPSFVVSIT 402
             +   +VR QVD    PDGKRI+LLAEGRLVNL+ ++  PS V+ ++
Sbjct: 310 LAVEKREVRPQVDEYELPDGKRIILLAEGRLVNLAAATGHPSEVMDMS 357

Length = 420

>gnl|CDD|213572 TIGR00936, ahcY, adenosylhomocysteinase

 Score =  148 bits (375), Expect = 2e-39
 Identities = 47/106 (44%), Positives = 68/106 (64%), Gaps = 1/106 (0%)

Query: 436 YTGLPVFAWRGETEEDFWWCIDKCVNSWQPNMILDDGGDATHWMLKKYPTMFKAIKGIVE 495
             G+PVFAWRGET E+++W I++ ++  +PN+I+DDG D    +  + P + + I G  E
Sbjct: 80  GAGIPVFAWRGETNEEYYWAIEQVLDH-EPNIIIDDGADLIFLLHTERPELLEKIIGGSE 138

Query: 496 ESLTGVHRLYQLSKAGKLTVPAMNVNDSVTKTKFDNLYMCRESIID 541
           E+ TGV RL  +   G L  PA+NVND+ TK+ FDN Y   +S ID
Sbjct: 139 ETTTGVIRLRAMEAEGVLKFPAINVNDAYTKSLFDNRYGTGQSTID 184

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704) [Energy metabolism, Amino acids and amines]. Length = 407

>gnl|CDD|240258 PTZ00075, PTZ00075, Adenosylhomocysteinase; Provisional

 Score =  141 bits (358), Expect = 1e-36
 Identities = 61/147 (41%), Positives = 81/147 (55%), Gaps = 46/147 (31%)

Query: 440 PVFAWRGETEEDFWWCIDKCVNSWQ----PNMILDDGGDAT---HWMLK----------- 481
           PVFAW+GET E++WWC ++ +  W     PN+I+DDGGDAT   H  +K           
Sbjct: 97  PVFAWKGETLEEYWWCTEQALK-WPNGDGPNLIVDDGGDATLLVHEGVKAEKLYEEKGIL 155

Query: 482 ---------------------------KYPTMFKAIKGIVEESLTGVHRLYQLSKAGKLT 514
                                      K+  + K I G+ EE+ TGVHRLY++ K G+L 
Sbjct: 156 PDPLDPSNEDEKCLLTVLKKLLTKNPDKWTNLVKKIVGVSEETTTGVHRLYKMLKKGELL 215

Query: 515 VPAMNVNDSVTKTKFDNLYMCRESIID 541
            PA+NVNDSVTK+KFDN+Y CR S+ID
Sbjct: 216 FPAINVNDSVTKSKFDNIYGCRHSLID 242

Length = 476

>gnl|CDD|240258 PTZ00075, PTZ00075, Adenosylhomocysteinase; Provisional

 Score =  141 bits (358), Expect = 1e-36
 Identities = 57/114 (50%), Positives = 79/114 (69%), Gaps = 2/114 (1%)

Query: 295 SMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLR 354
           +M+G+ VV L +V+ T DI VTATGNK+++T EHM +MKN  +V N+GH + EI V  L 
Sbjct: 294 AMEGYQVVTLEDVVETADIFVTATGNKDIITLEHMRRMKNNAIVGNIGHFDNEIQVAELE 353

Query: 355 T-PDLTWEKVRSQVDHVIWPDGKRIVLLAEGRLVNLSCSS-LPSFVVSITACTQ 406
             P +   +++ QVD   +PDGK I+LLAEGRLVNL C++  PSFV+S +   Q
Sbjct: 354 AYPGIEIVEIKPQVDRYTFPDGKGIILLAEGRLVNLGCATGHPSFVMSNSFTNQ 407

Length = 476

>gnl|CDD|213572 TIGR00936, ahcY, adenosylhomocysteinase

 Score =  128 bits (323), Expect = 2e-32
 Identities = 53/112 (47%), Positives = 72/112 (64%), Gaps = 1/112 (0%)

Query: 296 MDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRT 355
           MDGF V+ + E  +  DI +TATGNK+V+  EH + MK+G +V N+GH + EIDV +L  
Sbjct: 237 MDGFRVMTMEEAAKIGDIFITATGNKDVIRGEHFENMKDGAIVANIGHFDVEIDVKALEE 296

Query: 356 PDLTWEKVRSQVDHVIWPDGKRIVLLAEGRLVNLSCSS-LPSFVVSITACTQ 406
             +    VR QVD  I  DG+RI LLAEGRLVNL+ +   PS V+ ++   Q
Sbjct: 297 LAVEKVNVRPQVDEYILKDGRRIYLLAEGRLVNLAAAEGHPSEVMDMSFANQ 348

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704) [Energy metabolism, Amino acids and amines]. Length = 407

>gnl|CDD|240631 cd12154, FDH_GDH_like, Formate/glycerate dehydrogenases, D-specific 2-hydroxy acid dehydrogenases and related dehydrogenases

 Score =  122 bits (308), Expect = 3e-31
 Identities = 52/229 (22%), Positives = 81/229 (35%), Gaps = 32/229 (13%)

Query: 24  GCTHINAQTAAGKLTVPAMNVNDSVTKTKFDNLYMCRESIIDSLKRSTDVMFGG------ 77
           G  H +   A  +  + A+ V          N     E  +  + R  +V   G      
Sbjct: 97  GADHRDLTEALARAGLTAIAVEGVELPLLTSNSIGAGELSVQFIARFLEVQQPGRLGGAP 156

Query: 78  ----KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVKLNEVIRT 132
               K VV+ G G VGK   Q L+GLG  + IT+I+     Q    G   V +L E +  
Sbjct: 157 DVAGKTVVVVGAGVVGKEAAQMLRGLGAQVLITDINVEALEQLEELGGKNVEELEEALAE 216

Query: 133 VDIVVTATGNKN-----VVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRS 187
            D++VT T         +V  E +++MK G V+ N+                L  E    
Sbjct: 217 ADVIVTTTLLPGKRAGILVPEELVEQMKPGSVIVNVAVGAVGCVQALH--TQLLEE---- 270

Query: 188 QVDHVIWPDGKRIVLLAEGRLVNLSCSS-LPSFVVSITACTQALALIEL 235
                    G  +V   +  +    C+  +P       A     AL++L
Sbjct: 271 ---------GHGVVHYGDVNMPGPGCAMGVPWDATLRLAANTLPALVKL 310

The formate/glycerate dehydrogenase like family contains a diverse group of enzymes such as formate dehydrogenase (FDH), glycerate dehydrogenase (GDH), D-lactate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine hydrolase, that share a common 2-domain structure. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar domains of the alpha/beta Rossmann fold NAD+ binding form. The NAD(P) binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD(P) is bound, primarily to the C-terminal portion of the 2nd (internal) domain. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. 2-hydroxyacid dehydrogenases are enzymes that catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of formate ion to carbon dioxide with the concomitant reduction of NAD+ to NADH. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of a hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. Length = 310

>gnl|CDD|218507 pfam05221, AdoHcyase, S-adenosyl-L-homocysteine hydrolase

 Score =  123 bits (310), Expect = 2e-30
 Identities = 49/113 (43%), Positives = 70/113 (61%), Gaps = 1/113 (0%)

Query: 295 SMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLR 354
           +M+G+ VV L EV++  DI VT TG  +++   H   MK   +VCN+GH + EIDV  L 
Sbjct: 250 AMEGYQVVTLEEVVKDADIFVTTTGCVDIIVGRHFMNMKKDAIVCNIGHFDCEIDVGWLN 309

Query: 355 TPDLTWEKVRSQVDHVIWPDGKRIVLLAEGRLVNLSCSS-LPSFVVSITACTQ 406
                   ++ QVD    P+G+RI+LLAEGRL+NL C++  PSFV+S +   Q
Sbjct: 310 YNAKKITNIKPQVDRYTLPNGRRIILLAEGRLLNLGCATGHPSFVMSNSFTNQ 362

Length = 430

>gnl|CDD|178111 PLN02494, PLN02494, adenosylhomocysteinase

 Score =  114 bits (286), Expect = 3e-27
 Identities = 58/146 (39%), Positives = 78/146 (53%), Gaps = 46/146 (31%)

Query: 441 VFAWRGETEEDFWWCIDKCVNSWQ----PNMILDDGGDAT---HWMLK------------ 481
           VFAW+GET +++WWC ++ ++ W     P++I+DDGGDAT   H  +K            
Sbjct: 98  VFAWKGETLQEYWWCTERALD-WGPGGGPDLIVDDGGDATLLIHEGVKAEEEFEKDGTLP 156

Query: 482 --------------------------KYPTMFKAIKGIVEESLTGVHRLYQLSKAGKLTV 515
                                     KY  M + + G+ EE+ TGV RLYQ+ K G L  
Sbjct: 157 DPTSTDNAEFKIVLTIIKDGLKVDPKKYHKMKERLVGVSEETTTGVKRLYQMQKNGTLLF 216

Query: 516 PAMNVNDSVTKTKFDNLYMCRESIID 541
           PA+NVNDSVTK+KFDNLY CR S+ D
Sbjct: 217 PAINVNDSVTKSKFDNLYGCRHSLPD 242

Length = 477

>gnl|CDD|178111 PLN02494, PLN02494, adenosylhomocysteinase

 Score =  110 bits (277), Expect = 5e-26
 Identities = 50/114 (43%), Positives = 75/114 (65%), Gaps = 3/114 (2%)

Query: 296 MDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRT 355
           M+G+ V+ L +V+   DI VT TGNK+++  +HM KMKN  +VCN+GH + EID+  L T
Sbjct: 295 MEGYQVLTLEDVVSEADIFVTTTGNKDIIMVDHMRKMKNNAIVCNIGHFDNEIDMLGLET 354

Query: 356 -PDLTWEKVRSQVDHVIWPDGKR-IVLLAEGRLVNLSCSS-LPSFVVSITACTQ 406
            P +    ++ Q D  ++PD    I++LAEGRL+NL C++  PSFV+S +   Q
Sbjct: 355 YPGVKRITIKPQTDRWVFPDTGSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQ 408

Length = 477

>gnl|CDD|214963 smart00996, AdoHcyase, S-adenosyl-L-homocysteine hydrolase

 Score = 70.6 bits (174), Expect = 5e-13
 Identities = 21/33 (63%), Positives = 25/33 (75%)

Query: 1  MPGIMALRKRAGDDKPLKNARIVGCTHINAQTA 33
          MPG+MALR+  G +KPLK ARI GC H+  QTA
Sbjct: 22 MPGLMALREEYGAEKPLKGARIAGCLHMTIQTA 54

Length = 426

>gnl|CDD|218507 pfam05221, AdoHcyase, S-adenosyl-L-homocysteine hydrolase

 Score = 66.3 bits (162), Expect = 1e-11
 Identities = 20/33 (60%), Positives = 24/33 (72%)

Query: 1  MPGIMALRKRAGDDKPLKNARIVGCTHINAQTA 33
          MPG+MALR+  G  +PLK ARI GC H+  QTA
Sbjct: 25 MPGLMALREEYGPSQPLKGARIAGCLHMTVQTA 57

Length = 430

>gnl|CDD|240619 cd00401, SAHH, S-Adenosylhomocysteine Hydrolase, NAD-binding and catalytic domains

 Score = 62.1 bits (152), Expect = 3e-10
 Identities = 21/33 (63%), Positives = 25/33 (75%)

Query: 1  MPGIMALRKRAGDDKPLKNARIVGCTHINAQTA 33
          MP +MALR+R   +KPLK ARI GC H+ AQTA
Sbjct: 14 MPVLMALRERYAKEKPLKGARIAGCLHMTAQTA 46

S-adenosyl-L-homocysteine hydrolase (SAHH, AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homotetramers, with each monomer binding one molecule of NAD+. Length = 402

>gnl|CDD|235488 PRK05476, PRK05476, S-adenosyl-L-homocysteine hydrolase; Provisional

 Score = 56.3 bits (137), Expect = 2e-08
 Identities = 19/33 (57%), Positives = 24/33 (72%)

Query: 1  MPGIMALRKRAGDDKPLKNARIVGCTHINAQTA 33
          MPG+MA+R+    +KPLK ARI GC H+  QTA
Sbjct: 30 MPGLMAIREEFAAEKPLKGARIAGCLHMTIQTA 62

Length = 425

>gnl|CDD|240258 PTZ00075, PTZ00075, Adenosylhomocysteinase; Provisional

 Score = 54.3 bits (131), Expect = 9e-08
 Identities = 21/33 (63%), Positives = 24/33 (72%)

Query: 1  MPGIMALRKRAGDDKPLKNARIVGCTHINAQTA 33
          MPG+MALR+  G  KPLK ARI GC H+  QTA
Sbjct: 27 MPGLMALREEYGPSKPLKGARITGCLHMTVQTA 59

Length = 476

>gnl|CDD|240631 cd12154, FDH_GDH_like, Formate/glycerate dehydrogenases, D-specific 2-hydroxy acid dehydrogenases and related dehydrogenases

 Score = 52.2 bits (125), Expect = 3e-07
 Identities = 10/83 (12%), Positives = 26/83 (31%), Gaps = 9/83 (10%)

Query: 463 WQPNMILDDGGDATHW---MLKKYPTMFKAIKGIVEESLTGVHRLYQLSKAGKLTVPAMN 519
           W  +++L      T+    +++K        + +   ++   HR    +   +  + A+ 
Sbjct: 63  WSLDVVLKVKEPLTNAEYALIQKLG-----DRLLFTYTIGADHRDLTEA-LARAGLTAIA 116

Query: 520 VNDSVTKTKFDNLYMCRESIIDR 542
           V          N     E  +  
Sbjct: 117 VEGVELPLLTSNSIGAGELSVQF 139

The formate/glycerate dehydrogenase like family contains a diverse group of enzymes such as formate dehydrogenase (FDH), glycerate dehydrogenase (GDH), D-lactate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine hydrolase, that share a common 2-domain structure. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar domains of the alpha/beta Rossmann fold NAD+ binding form. The NAD(P) binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD(P) is bound, primarily to the C-terminal portion of the 2nd (internal) domain. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. 2-hydroxyacid dehydrogenases are enzymes that catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of formate ion to carbon dioxide with the concomitant reduction of NAD+ to NADH. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of a hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. Length = 310

>gnl|CDD|223573 COG0499, SAM1, S-adenosylhomocysteine hydrolase [Coenzyme metabolism]

 Score = 52.3 bits (126), Expect = 4e-07
 Identities = 18/34 (52%), Positives = 25/34 (73%)

Query: 1  MPGIMALRKRAGDDKPLKNARIVGCTHINAQTAA 34
          MP +MA+R+   ++KPLK ARI GC H+ A+TA 
Sbjct: 27 MPVLMAIREEFAEEKPLKGARIAGCLHMTAKTAV 60

Length = 420

>gnl|CDD|213572 TIGR00936, ahcY, adenosylhomocysteinase

 Score = 50.9 bits (122), Expect = 1e-06
 Identities = 16/33 (48%), Positives = 23/33 (69%)

Query: 1  MPGIMALRKRAGDDKPLKNARIVGCTHINAQTA 33
          MP +M +R+R  ++KPLK ARI  C H+  +TA
Sbjct: 14 MPVLMRIRERFSEEKPLKGARIAACLHVTVETA 46

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704) [Energy metabolism, Amino acids and amines]. Length = 407

>gnl|CDD|217244 pfam02826, 2-Hacid_dh_C, D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain

 Score = 46.3 bits (111), Expect = 6e-06
 Identities = 24/93 (25%), Positives = 40/93 (43%), Gaps = 8/93 (8%)

Query: 77  GKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMDGFSVVKLNEVIRTVDI 135
           GK V + G G +G+   + LK  G  VI     D     +A   G   V L+E++   D+
Sbjct: 35  GKTVGIIGLGRIGRAVARRLKAFGMKVIA---YDRYPKAEAEALGARYVSLDELLAESDV 91

Query: 136 VVTAT----GNKNVVTREHMDKMKNGCVVCNMG 164
           V          ++++  E +  MK G ++ N  
Sbjct: 92  VSLHLPLTPETRHLINAERLALMKPGAILINTA 124

This domain is inserted into the catalytic domain, the large dehydrogenase and D-lactate dehydrogenase families in SCOP. N-terminal portion of which is represented by family pfam00389. Length = 175

>gnl|CDD|214966 smart01002, AlaDh_PNT_C, Alanine dehydrogenase/PNT, C-terminal domain

 Score = 45.2 bits (108), Expect = 1e-05
 Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 13/95 (13%)

Query: 80  VVLCGYGEVGKGCCQSLKGLGCVIYITEIDP--ICALQACMDG-FSVVKLN-----EVIR 131
           VV+ G G VG G   + KGLG  + + ++ P  +  L++ +   F+ +        E ++
Sbjct: 23  VVVIGAGVVGLGAAATAKGLGAEVTVLDVRPARLRQLESLLGARFTTLYSQAELLEEAVK 82

Query: 132 TVDIVVTA---TGNK--NVVTREHMDKMKNGCVVC 161
             D+V+ A    G K   +VTRE +  MK G V+ 
Sbjct: 83  EADLVIGAVLIPGAKAPKLVTREMVKSMKPGSVIV 117

Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Length = 149

>gnl|CDD|216396 pfam01262, AlaDh_PNT_C, Alanine dehydrogenase/PNT, C-terminal domain

 Score = 44.1 bits (105), Expect = 3e-05
 Identities = 31/105 (29%), Positives = 44/105 (41%), Gaps = 17/105 (16%)

Query: 74  MFGGKQ---VVLCGYGEVGKGCCQSLKGLGCVIYITEIDP--ICALQACMDGFSVVK--- 125
             GG     VV+ G G VG G   + KGLG  + I ++ P  +  L +    F       
Sbjct: 14  GAGGVPPAKVVVIGGGVVGLGAAATAKGLGAPVTILDVRPERLEQLDSLFAEFVETDIFS 73

Query: 126 ----LNEVIRTVDIVVTA---TGNK--NVVTREHMDKMKNGCVVC 161
               L E I   D+V+      G +   +VTRE +  MK G V+ 
Sbjct: 74  NCEYLAEAIAEADLVIGTVLIPGARAPKLVTREMVKTMKPGSVIV 118

This family now also contains the lysine 2-oxoglutarate reductases. Length = 150

>gnl|CDD|240648 cd12171, 2-Hacid_dh_10, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score = 44.8 bits (107), Expect = 5e-05
 Identities = 24/95 (25%), Positives = 40/95 (42%), Gaps = 13/95 (13%)

Query: 76  GGKQVVLCGYGEVGKGCCQSLKGLGC--VIYITEIDPIC-ALQACMDGFSVVKLNEVIRT 132
            GK V + G+G +G+   + LK  G   ++Y    DP     +   DG   V L E+++ 
Sbjct: 146 RGKTVGIVGFGAIGRRVAKRLKAFGAEVLVY----DPYVDPEKIEADGVKKVSLEELLKR 201

Query: 133 VDIV-----VTATGNKNVVTREHMDKMKNGCVVCN 162
            D+V     +T    + ++  E    MK      N
Sbjct: 202 SDVVSLHARLTP-ETRGMIGAEEFALMKPTAYFIN 235

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 310

>gnl|CDD|223189 COG0111, SerA, Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 24/93 (25%), Positives = 39/93 (41%), Gaps = 10/93 (10%)

Query: 77  GKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQAC--MDGFSVVKLNEVIRTV 133
           GK V + G G +G+   + LK  G  VI     DP    +         V  L+E++   
Sbjct: 142 GKTVGIIGLGRIGRAVAKRLKAFGMKVIG---YDPYSPRERAGVDGVVGVDSLDELLAEA 198

Query: 134 DIVVTAT----GNKNVVTREHMDKMKNGCVVCN 162
           DI+          + ++  E + KMK G ++ N
Sbjct: 199 DILTLHLPLTPETRGLINAEELAKMKPGAILIN 231

Length = 324

>gnl|CDD|240622 cd05198, formate_dh_like, Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxy acid dehydrogenase family

 Score = 42.6 bits (101), Expect = 3e-04
 Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 11/93 (11%)

Query: 77  GKQVVLCGYGEVGKGCCQSLKGLGC-VIY--ITEIDPICALQACMDGFSVVKLNEVIRTV 133
           GK V + G G +G+   + L+  G  V+Y   T             GF VV L+E++   
Sbjct: 140 GKTVGIVGLGRIGQRVAKRLQAFGMKVLYYDRTRKPEPEEDL----GFRVVSLDELLAQS 195

Query: 134 DIVVTATG----NKNVVTREHMDKMKNGCVVCN 162
           D+VV         ++++  E +  MK G V+ N
Sbjct: 196 DVVVLHLPLTPETRHLINEEELALMKPGAVLVN 228

Formate dehydrogenase, D-specific 2-hydroxy acid dehydrogenase, Phosphoglycerate Dehydrogenase, Lactate dehydrogenase, Thermostable Phosphite Dehydrogenase, and Hydroxy(phenyl)pyruvate reductase, among others, share a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. 2-hydroxyacid dehydrogenases are enzymes that catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of formate ion to carbon dioxide with the concomitant reduction of NAD+ to NADH. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. FDHs are found in all methylotrophic microorganisms in energy production and in the stress responses of plants. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase, among others. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 302

>gnl|CDD|240628 cd05303, PGDH_2, Phosphoglycerate dehydrogenase (PGDH) NAD-binding and catalytic domains

 Score = 42.5 bits (101), Expect = 3e-04
 Identities = 25/104 (24%), Positives = 48/104 (46%), Gaps = 8/104 (7%)

Query: 77  GKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMDGFSVVKLNEVIRTVDI 135
           GK + + G+G +G+   +  + LG  VI   +  P         G   V L E+++  D 
Sbjct: 139 GKTLGIIGFGRIGREVAKIARALGMNVIA-YDPYPKDEQAV-ELGVKTVSLEELLKNSDF 196

Query: 136 V---VTATG-NKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSL 175
           +   V  T   K+++ ++ ++ MK+G ++ N       ID  +L
Sbjct: 197 ISLHVPLTPETKHMINKKELELMKDGAIIINTSRGGV-IDEEAL 239

Phosphoglycerate dehydrogenase (PGDH) catalyzes the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDH comes in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases. PGDH in E. coli and Mycobacterium tuberculosis form tetramers, with subunits containing a Rossmann-fold NAD binding domain. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Length = 301

>gnl|CDD|178111 PLN02494, PLN02494, adenosylhomocysteinase

 Score = 41.8 bits (98), Expect = 7e-04
 Identities = 17/33 (51%), Positives = 20/33 (60%)

Query: 1  MPGIMALRKRAGDDKPLKNARIVGCTHINAQTA 33
          MPG+MA R   G  +P K ARI G  H+  QTA
Sbjct: 28 MPGLMACRTEFGPSQPFKGARITGSLHMTIQTA 60

Length = 477

>gnl|CDD|240631 cd12154, FDH_GDH_like, Formate/glycerate dehydrogenases, D-specific 2-hydroxy acid dehydrogenases and related dehydrogenases

 Score = 41.4 bits (97), Expect = 7e-04
 Identities = 20/112 (17%), Positives = 34/112 (30%), Gaps = 21/112 (18%)

Query: 288 PFKPSYYSMDGFS-VVKLNEVIRTVDIVVTATGNKN-----VVTREHMDKMKNGCVVCNM 341
                     G   V +L E +   D++VT T         +V  E +++MK G V+ N+
Sbjct: 193 VEALEQLEELGGKNVEELEEALAEADVIVTTTLLPGKRAGILVPEELVEQMKPGSVIVNV 252

Query: 342 GHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIVLLAEGRLVNLSCSS 393
                           L  E             G  +V   +  +    C+ 
Sbjct: 253 AVGAVGCVQALH--TQLLEE-------------GHGVVHYGDVNMPGPGCAM 289

The formate/glycerate dehydrogenase like family contains a diverse group of enzymes such as formate dehydrogenase (FDH), glycerate dehydrogenase (GDH), D-lactate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine hydrolase, that share a common 2-domain structure. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar domains of the alpha/beta Rossmann fold NAD+ binding form. The NAD(P) binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD(P) is bound, primarily to the C-terminal portion of the 2nd (internal) domain. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. 2-hydroxyacid dehydrogenases are enzymes that catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of formate ion to carbon dioxide with the concomitant reduction of NAD+ to NADH. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of a hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. Length = 310

>gnl|CDD|234592 PRK00045, hemA, glutamyl-tRNA reductase; Reviewed

 Score = 41.7 bits (99), Expect = 8e-04
 Identities = 21/99 (21%), Positives = 44/99 (44%), Gaps = 14/99 (14%)

Query: 61  ESIIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCV-IYIT----EIDPICALQ 115
           + I   L         GK+V++ G GE+G+   + L   G   I +     E     A +
Sbjct: 174 KQIFGDLS--------GKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEELAEE 225

Query: 116 ACMDGFSVVKLNEVIRTVDIVVTATGNKN-VVTREHMDK 153
              +   + +L E +   DIV+++TG  + ++ +  +++
Sbjct: 226 FGGEAIPLDELPEALAEADIVISSTGAPHPIIGKGMVER 264

Length = 423

>gnl|CDD|240625 cd05300, 2-Hacid_dh_1, Putative D-isomer specific 2-hydroxyacid dehydrogenase

 Score = 41.4 bits (98), Expect = 9e-04
 Identities = 23/94 (24%), Positives = 41/94 (43%), Gaps = 8/94 (8%)

Query: 77  GKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIV 136
           GK V++ G G++G+   +  K  G  +         A     + ++  +L+E++   D V
Sbjct: 134 GKTVLIVGLGDIGREIARRAKAFGMRVIGVRRSGRPAPPVVDEVYTPDELDELLPEADYV 193

Query: 137 VTA------TGNKNVVTREHMDKMKNGCVVCNMG 164
           V A      T  + +   E    MK G V+ N+G
Sbjct: 194 VNALPLTPET--RGLFNAERFAAMKPGAVLINVG 225

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomains but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of formate ion to carbon dioxide with the concomitant reduction of NAD+ to NADH. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of the hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. FDHs are found in all methylotrophic microorganisms in energy production and in the stress responses of plants. Length = 313

>gnl|CDD|240654 cd12177, 2-Hacid_dh_12, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains

 Score = 41.2 bits (97), Expect = 9e-04
 Identities = 23/94 (24%), Positives = 37/94 (39%), Gaps = 8/94 (8%)

Query: 75  FGGKQVVLCGYGEVGKGCCQSLK-GLGCVIYITEIDP-ICALQACMDGFSVVKLNEVIRT 132
             GK V + GYG +G    + LK G    +     DP +        G   V L E++  
Sbjct: 145 LSGKTVGIIGYGNIGSRVAEILKEGFNAKVLAY--DPYVSEEVIKKKGAKPVSLEELLAE 202

Query: 133 VDIVV----TATGNKNVVTREHMDKMKNGCVVCN 162
            DI+           +++  +   KMK G ++ N
Sbjct: 203 SDIISLHAPLTEETYHMINEKAFSKMKKGVILVN 236

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 321

>gnl|CDD|216949 pfam02254, TrkA_N, TrkA-N domain

 Score = 38.3 bits (90), Expect = 0.001
 Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 9/72 (12%)

Query: 80  VVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLN----EV-----I 130
           +++ GYG VG+   + L+  G  + + + DP    +   +G  VV  +    EV     I
Sbjct: 1   IIIIGYGRVGRSLAEELREGGPDVVVIDKDPERVEELREEGVPVVVGDATDEEVLEEAGI 60

Query: 131 RTVDIVVTATGN 142
              D VV ATG+
Sbjct: 61  EEADAVVAATGD 72

This domain is found in a wide variety of proteins. These protein include potassium channels, phosphoesterases, and various other transporters. This domain binds to NAD. Length = 116

>gnl|CDD|240634 cd12157, PTDH, Thermostable Phosphite Dehydrogenase

 Score = 40.7 bits (96), Expect = 0.001
 Identities = 22/92 (23%), Positives = 42/92 (45%), Gaps = 4/92 (4%)

Query: 77  GKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIV 136
           GK V + G G +G+   + L G G  +   +  P+   +        V+L+E++ + D +
Sbjct: 144 GKTVGILGMGALGRAIARRLSGFGATLLYYDPHPLDQAEEQALNLRRVELDELLESSDFL 203

Query: 137 VTAT----GNKNVVTREHMDKMKNGCVVCNMG 164
           V A        +++  E + KMK G ++ N  
Sbjct: 204 VLALPLTPDTLHLINAEALAKMKPGALLVNPC 235

Phosphite dehydrogenase (PTDH), a member of the D-specific 2-hydroxyacid dehydrogenase family, catalyzes the NAD-dependent formation of phosphate from phosphite (hydrogen phosphonate). PTDH has been suggested as a potential enzyme for cofactor regeneration systems. The D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD-binding domain. Length = 318

>gnl|CDD|215501 PLN02928, PLN02928, oxidoreductase family protein

 Score = 40.4 bits (95), Expect = 0.002
 Identities = 23/104 (22%), Positives = 37/104 (35%), Gaps = 16/104 (15%)

Query: 77  GKQVVLCGYGEVGKGCCQSLKGLGCVIYIT------EIDPICALQACMDGFSVVK----- 125
           GK V + GYG +G    + L+  G  +  T      E +    +        V +     
Sbjct: 159 GKTVFILGYGAIGIELAKRLRPFGVKLLATRRSWTSEPEDGLLIPNGDVDDLVDEKGGHE 218

Query: 126 -LNEVIRTVDIVVTA----TGNKNVVTREHMDKMKNGCVVCNMG 164
            + E     DIVV           +V  E +  MK G ++ N+ 
Sbjct: 219 DIYEFAGEADIVVLCCTLTKETAGIVNDEFLSSMKKGALLVNIA 262

Length = 347

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	542
COG0499	420	SAM1 S-adenosylhomocysteine hydrolase [Coenzyme me	100.0
KOG1370|consensus	434		100.0
PLN02494	477	adenosylhomocysteinase	100.0
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	100.0
PTZ00075	476	Adenosylhomocysteinase; Provisional	100.0
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	100.0
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	100.0
COG0499	420	SAM1 S-adenosylhomocysteine hydrolase [Coenzyme me	100.0
KOG1370|consensus	434		100.0
PLN02494	477	adenosylhomocysteinase	100.0
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	100.0
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	100.0
PTZ00075	476	Adenosylhomocysteinase; Provisional	100.0
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	100.0
PF05221	268	AdoHcyase: S-adenosyl-L-homocysteine hydrolase; In	100.0
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	100.0
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	100.0
PF05221	268	AdoHcyase: S-adenosyl-L-homocysteine hydrolase; In	99.97
COG0111	324	SerA Phosphoglycerate dehydrogenase and related de	99.71
COG1052	324	LdhA Lactate dehydrogenase and related dehydrogena	99.67
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	99.65
PRK08410	311	2-hydroxyacid dehydrogenase; Provisional	99.62
PRK15409	323	bifunctional glyoxylate/hydroxypyruvate reductase	99.62
PRK06487	317	glycerate dehydrogenase; Provisional	99.57
PRK06932	314	glycerate dehydrogenase; Provisional	99.55
PLN02928	347	oxidoreductase family protein	99.55
PLN03139	386	formate dehydrogenase; Provisional	99.54
PRK07574	385	formate dehydrogenase; Provisional	99.53
PRK13243	333	glyoxylate reductase; Reviewed	99.52
PLN02306	386	hydroxypyruvate reductase	99.52
PRK11790	409	D-3-phosphoglycerate dehydrogenase; Provisional	99.51
TIGR01327	525	PGDH D-3-phosphoglycerate dehydrogenase. This mode	99.51
KOG0068|consensus	406		99.49
PRK15438	378	erythronate-4-phosphate dehydrogenase PdxB; Provis	99.49
KOG0069|consensus	336		99.49
PRK00257	381	erythronate-4-phosphate dehydrogenase; Validated	99.48
PRK13581	526	D-3-phosphoglycerate dehydrogenase; Provisional	99.48
PRK15469	312	ghrA bifunctional glyoxylate/hydroxypyruvate reduc	99.4
PRK06436	303	glycerate dehydrogenase; Provisional	99.29
PRK12480	330	D-lactate dehydrogenase; Provisional	99.29
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	99.25
PRK08605	332	D-lactate dehydrogenase; Validated	99.19
COG0111	324	SerA Phosphoglycerate dehydrogenase and related de	99.18
PRK08410	311	2-hydroxyacid dehydrogenase; Provisional	99.17
COG1052	324	LdhA Lactate dehydrogenase and related dehydrogena	99.16
KOG0024|consensus	354		99.06
PRK08306	296	dipicolinate synthase subunit A; Reviewed	99.01
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	99.01
PRK15409	323	bifunctional glyoxylate/hydroxypyruvate reductase	98.98
KOG0068|consensus	406		98.92
PRK06487	317	glycerate dehydrogenase; Provisional	98.92
PRK06932	314	glycerate dehydrogenase; Provisional	98.91
PRK13403	335	ketol-acid reductoisomerase; Provisional	98.91
PRK11790	409	D-3-phosphoglycerate dehydrogenase; Provisional	98.88
PLN03139	386	formate dehydrogenase; Provisional	98.85
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	98.85
PRK15438	378	erythronate-4-phosphate dehydrogenase PdxB; Provis	98.84
PRK07574	385	formate dehydrogenase; Provisional	98.76
PRK00257	381	erythronate-4-phosphate dehydrogenase; Validated	98.73
PLN02928	347	oxidoreductase family protein	98.73
PLN02306	386	hydroxypyruvate reductase	98.7
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	98.66
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	98.65
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	98.65
PRK13243	333	glyoxylate reductase; Reviewed	98.65
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	98.63
TIGR01327	525	PGDH D-3-phosphoglycerate dehydrogenase. This mode	98.62
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	98.55
PRK13581	526	D-3-phosphoglycerate dehydrogenase; Provisional	98.53
PF07991	165	IlvN: Acetohydroxy acid isomeroreductase, catalyti	98.5
PRK14175	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.46
PRK14189	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.44
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	98.44
PRK08306	296	dipicolinate synthase subunit A; Reviewed	98.43
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	98.43
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	98.42
PRK14192	283	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.41
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	98.39
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	98.37
PF02882	160	THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl	98.36
PLN02178	375	cinnamyl-alcohol dehydrogenase	98.36
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	98.34
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	98.33
cd08281	371	liver_ADH_like1 Zinc-dependent alcohol dehydrogena	98.33
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	98.33
PRK14194	301	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.31
PRK05479	330	ketol-acid reductoisomerase; Provisional	98.31
COG1062	366	AdhC Zn-dependent alcohol dehydrogenases, class II	98.3
PRK14191	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.29
PLN02586	360	probable cinnamyl alcohol dehydrogenase	98.28
PRK10792	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.28
PRK14176	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.28
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	98.27
cd08237	341	ribitol-5-phosphate_DH ribitol-5-phosphate dehydro	98.26
TIGR02822	329	adh_fam_2 zinc-binding alcohol dehydrogenase famil	98.23
cd05212	140	NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom	98.2
PRK14188	296	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.19
PRK12480	330	D-lactate dehydrogenase; Provisional	98.18
cd01079	197	NAD_bind_m-THF_DH NAD binding domain of methylene-	98.16
PLN02827	378	Alcohol dehydrogenase-like	98.14
PRK05225	487	ketol-acid reductoisomerase; Validated	98.14
KOG0022|consensus	375		98.13
PRK14190	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.13
cd08239	339	THR_DH_like L-threonine dehydrogenase (TDH)-like.	98.12
PRK06436	303	glycerate dehydrogenase; Provisional	98.11
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	98.11
PRK14186	297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.11
TIGR03201	349	dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co	98.11
PRK14183	281	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.1
PRK14169	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.1
PRK14170	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.1
PF00107	130	ADH_zinc_N: Zinc-binding dehydrogenase; InterPro:	98.09
PRK14166	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.09
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	98.09
TIGR00465	314	ilvC ketol-acid reductoisomerase. This is the seco	98.09
TIGR01035	417	hemA glutamyl-tRNA reductase. This enzyme, togethe	98.08
PRK14179	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.08
PRK14171	288	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.08
TIGR03451	358	mycoS_dep_FDH mycothiol-dependent formaldehyde deh	98.07
PRK14177	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.07
PRK14172	278	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.07
PRK00045	423	hemA glutamyl-tRNA reductase; Reviewed	98.07
PRK14178	279	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.06
cd05191	86	NAD_bind_amino_acid_DH NAD(P) binding domain of am	98.06
PRK14187	294	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.06
PLN02516	299	methylenetetrahydrofolate dehydrogenase (NADP+)	98.06
TIGR01505	291	tartro_sem_red 2-hydroxy-3-oxopropionate reductase	98.05
PRK14182	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.04
TIGR02818	368	adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr	98.04
PRK14180	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.04
TIGR02819	393	fdhA_non_GSH formaldehyde dehydrogenase, glutathio	98.04
PRK14173	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.04
PLN02514	357	cinnamyl-alcohol dehydrogenase	98.03
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	98.03
PRK14181	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.01
PLN02897	345	tetrahydrofolate dehydrogenase/cyclohydrolase, put	98.0
PLN02616	364	tetrahydrofolate dehydrogenase/cyclohydrolase, put	98.0
PLN02740	381	Alcohol dehydrogenase-like	98.0
COG2084	286	MmsB 3-hydroxyisobutyrate dehydrogenase and relate	97.98
KOG0069|consensus	336		97.98
PRK11559	296	garR tartronate semialdehyde reductase; Provisiona	97.98
PRK14193	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.96
PRK14185	293	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.95
COG0190	283	FolD 5,10-methylene-tetrahydrofolate dehydrogenase	97.94
PRK10309	347	galactitol-1-phosphate dehydrogenase; Provisional	97.94
PRK15461	296	NADH-dependent gamma-hydroxybutyrate dehydrogenase	97.92
PRK14167	297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.92
PRK14184	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.92
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	97.88
PRK14168	297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.86
PRK08605	332	D-lactate dehydrogenase; Validated	97.86
COG0373	414	HemA Glutamyl-tRNA reductase [Coenzyme metabolism]	97.86
PRK14174	295	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.84
PRK07417	279	arogenate dehydrogenase; Reviewed	97.83
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	97.82
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	97.81
cd08277	365	liver_alcohol_DH_like Liver alcohol dehydrogenase.	97.8
KOG0023|consensus	360		97.79
PRK12490	299	6-phosphogluconate dehydrogenase-like protein; Rev	97.79
PLN00203	519	glutamyl-tRNA reductase	97.79
PLN03154	348	putative allyl alcohol dehydrogenase; Provisional	97.77
PLN02712	667	arogenate dehydrogenase	97.77
cd08300	368	alcohol_DH_class_III class III alcohol dehydrogena	97.75
PRK15469	312	ghrA bifunctional glyoxylate/hydroxypyruvate reduc	97.75
PRK09599	301	6-phosphogluconate dehydrogenase-like protein; Rev	97.74
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	97.71
cd08296	333	CAD_like Cinnamyl alcohol dehydrogenases (CAD). Ci	97.71
TIGR02825	325	B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15	97.7
cd01076	227	NAD_bind_1_Glu_DH NAD(P) binding domain of glutama	97.7
cd08301	369	alcohol_DH_plants Plant alcohol dehydrogenase. NAD	97.69
cd08233	351	butanediol_DH_like (2R,3R)-2,3-butanediol dehydrog	97.68
COG0059	338	IlvC Ketol-acid reductoisomerase [Amino acid trans	97.65
PLN02256	304	arogenate dehydrogenase	97.64
PRK07340	304	ornithine cyclodeaminase; Validated	97.63
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	97.62
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	97.62
PRK00258	278	aroE shikimate 5-dehydrogenase; Reviewed	97.6
cd08231	361	MDR_TM0436_like Hypothetical enzyme TM0436 resembl	97.57
PRK08618	325	ornithine cyclodeaminase; Validated	97.57
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	97.56
COG0604	326	Qor NADPH:quinone reductase and related Zn-depende	97.56
cd08293	345	PTGR2 Prostaglandin reductase. Prostaglandins and	97.56
cd05283	337	CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnam	97.55
cd08242	319	MDR_like Medium chain dehydrogenases/reductase (MD	97.54
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	97.54
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	97.53
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	97.53
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	97.53
PRK08507	275	prephenate dehydrogenase; Validated	97.52
cd08285	351	NADP_ADH NADP(H)-dependent alcohol dehydrogenases.	97.5
cd08255	277	2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_	97.49
TIGR01692	288	HIBADH 3-hydroxyisobutyrate dehydrogenase. This en	97.49
cd08238	410	sorbose_phosphate_red L-sorbose-1-phosphate reduct	97.48
PRK14982	340	acyl-ACP reductase; Provisional	97.47
cd08295	338	double_bond_reductase_like Arabidopsis alkenal dou	97.47
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	97.47
cd05284	340	arabinose_DH_like D-arabinose dehydrogenase. This	97.47
PRK06545	359	prephenate dehydrogenase; Validated	97.44
PRK13940	414	glutamyl-tRNA reductase; Provisional	97.44
TIGR00872	298	gnd_rel 6-phosphogluconate dehydrogenase (decarbox	97.44
TIGR02371	325	ala_DH_arch alanine dehydrogenase, Archaeoglobus f	97.43
cd08294	329	leukotriene_B4_DH_like 13-PGR is a bifunctional en	97.43
PLN02688	266	pyrroline-5-carboxylate reductase	97.43
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	97.42
cd08278	365	benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Be	97.42
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	97.42
cd05211	217	NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of	97.39
PRK10083	339	putative oxidoreductase; Provisional	97.39
PRK15059	292	tartronate semialdehyde reductase; Provisional	97.39
PRK06141	314	ornithine cyclodeaminase; Validated	97.38
PRK08655	437	prephenate dehydrogenase; Provisional	97.38
PLN02712	667	arogenate dehydrogenase	97.37
PRK14031	444	glutamate dehydrogenase; Provisional	97.36
cd08284	344	FDH_like_2 Glutathione-dependent formaldehyde dehy	97.36
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	97.35
cd08299	373	alcohol_DH_class_I_II_IV class I, II, IV alcohol d	97.34
cd08246	393	crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-	97.33
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	97.33
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	97.32
cd08270	305	MDR4 Medium chain dehydrogenases/reductase (MDR)/z	97.32
cd05313	254	NAD_bind_2_Glu_DH NAD(P) binding domain of glutama	97.31
cd08291	324	ETR_like_1 2-enoyl thioester reductase (ETR) like	97.3
PRK09414	445	glutamate dehydrogenase; Provisional	97.29
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	97.29
PLN02477	410	glutamate dehydrogenase	97.28
TIGR02992	326	ectoine_eutC ectoine utilization protein EutC. Mem	97.28
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	97.28
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	97.28
PRK06823	315	ornithine cyclodeaminase; Validated	97.27
COG0287	279	TyrA Prephenate dehydrogenase [Amino acid transpor	97.26
cd08298	329	CAD2 Cinnamyl alcohol dehydrogenases (CAD). These	97.25
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	97.25
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	97.24
PRK07531	495	bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe	97.24
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	97.24
PF02423	313	OCD_Mu_crystall: Ornithine cyclodeaminase/mu-cryst	97.24
cd08289	326	MDR_yhfp_like Yhfp putative quinone oxidoreductase	97.23
PLN02350	493	phosphogluconate dehydrogenase (decarboxylating)	97.2
PLN02858	1378	fructose-bisphosphate aldolase	97.2
PRK12491	272	pyrroline-5-carboxylate reductase; Reviewed	97.2
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	97.19
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	97.19
PRK14030	445	glutamate dehydrogenase; Provisional	97.19
cd05280	325	MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone	97.18
PF00208	244	ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Val	97.17
cd08265	384	Zn_ADH3 Alcohol dehydrogenases of the MDR family.	97.17
PRK12862	763	malic enzyme; Reviewed	97.17
PRK06407	301	ornithine cyclodeaminase; Provisional	97.16
PRK12861	764	malic enzyme; Reviewed	97.16
PRK13302	271	putative L-aspartate dehydrogenase; Provisional	97.14
cd08283	386	FDH_like_1 Glutathione-dependent formaldehyde dehy	97.14
PLN02858	1378	fructose-bisphosphate aldolase	97.14
PRK11199	374	tyrA bifunctional chorismate mutase/prephenate deh	97.13
PRK06046	326	alanine dehydrogenase; Validated	97.13
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	97.13
PRK14806	735	bifunctional cyclohexadienyl dehydrogenase/ 3-phos	97.13
PTZ00079	454	NADP-specific glutamate dehydrogenase; Provisional	97.11
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	97.11
cd08245	330	CAD Cinnamyl alcohol dehydrogenases (CAD) and rela	97.1
KOG0067|consensus	435		97.1
cd08252	336	AL_MDR Arginate lyase and other MDR family members	97.09
cd08240	350	6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehy	97.07
cd08274	350	MDR9 Medium chain dehydrogenases/reductase (MDR)/z	97.07
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.07
cd08292	324	ETR_like_2 2-enoyl thioester reductase (ETR) like	97.06
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	97.06
TIGR01809	282	Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO	97.06
cd08256	350	Zn_ADH2 Alcohol dehydrogenases of the MDR family.	97.05
TIGR01546	333	GAPDH-II_archae glyceraldehyde-3-phosphate dehydro	97.04
PTZ00142	470	6-phosphogluconate dehydrogenase; Provisional	97.04
cd08254	338	hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo	97.03
COG0345	266	ProC Pyrroline-5-carboxylate reductase [Amino acid	97.03
cd08286	345	FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-lik	97.02
cd08234	334	threonine_DH_like L-threonine dehydrogenase. L-thr	97.02
PRK11880	267	pyrroline-5-carboxylate reductase; Reviewed	97.02
PRK09422	338	ethanol-active dehydrogenase/acetaldehyde-active r	97.02
PRK07589	346	ornithine cyclodeaminase; Validated	97.01
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	97.01
cd08282	375	PFDH_like Pseudomonas putida aldehyde-dismutating	97.01
cd05279	365	Zn_ADH1 Liver alcohol dehydrogenase and related zi	97.01
cd08243	320	quinone_oxidoreductase_like_1 Quinone oxidoreducta	96.98
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	96.98
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	96.97
cd08269	312	Zn_ADH9 Alcohol dehydrogenases of the MDR family.	96.96
PLN02702	364	L-idonate 5-dehydrogenase	96.96
TIGR01751	398	crot-CoA-red crotonyl-CoA reductase. The enzyme mo	96.95
cd08260	345	Zn_ADH6 Alcohol dehydrogenases of the MDR family.	96.94
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	96.93
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	96.93
cd08287	345	FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-lik	96.93
TIGR02823	323	oxido_YhdH putative quinone oxidoreductase, YhdH/Y	96.92
PRK07680	273	late competence protein ComER; Validated	96.92
cd08297	341	CAD3 Cinnamyl alcohol dehydrogenases (CAD). These	96.92
PRK15182	425	Vi polysaccharide biosynthesis protein TviB; Provi	96.91
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	96.91
cd05312	279	NAD_bind_1_malic_enz NAD(P) binding domain of mali	96.9
PRK07232	752	bifunctional malic enzyme oxidoreductase/phosphotr	96.9
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	96.88
PRK08818	370	prephenate dehydrogenase; Provisional	96.86
PRK06476	258	pyrroline-5-carboxylate reductase; Reviewed	96.86
COG1712	255	Predicted dinucleotide-utilizing enzyme [General f	96.84
PRK08291	330	ectoine utilization protein EutC; Validated	96.83
cd08232	339	idonate-5-DH L-idonate 5-dehydrogenase. L-idonate	96.82
cd05285	343	sorbitol_DH Sorbitol dehydrogenase. Sorbitol and a	96.81
PRK07679	279	pyrroline-5-carboxylate reductase; Reviewed	96.81
COG0569	225	TrkA K+ transport systems, NAD-binding component [	96.81
PRK10754	327	quinone oxidoreductase, NADPH-dependent; Provision	96.79
cd08264	325	Zn_ADH_like2 Alcohol dehydrogenases of the MDR fam	96.79
cd08258	306	Zn_ADH4 Alcohol dehydrogenases of the MDR family.	96.79
TIGR01724	341	hmd_rel H2-forming N(5),N(10)-methenyltetrahydrome	96.77
COG3288	356	PntA NAD/NADP transhydrogenase alpha subunit [Ener	96.77
COG2423	330	Predicted ornithine cyclodeaminase, mu-crystallin	96.77
cd05288	329	PGDH Prostaglandin dehydrogenases. Prostaglandins	96.76
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	96.75
COG0334	411	GdhA Glutamate dehydrogenase/leucine dehydrogenase	96.75
TIGR00873	467	gnd 6-phosphogluconate dehydrogenase, decarboxylat	96.72
KOG0409|consensus	327		96.72
cd05281	341	TDH Threonine dehydrogenase. L-threonine dehydroge	96.72
PRK06719	157	precorrin-2 dehydrogenase; Validated	96.71
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	96.69
cd08263	367	Zn_ADH10 Alcohol dehydrogenases of the MDR family.	96.69
TIGR00692	340	tdh L-threonine 3-dehydrogenase. E. coli His-90 mo	96.69
cd05282	323	ETR_like 2-enoyl thioester reductase-like. 2-enoyl	96.68
PRK05396	341	tdh L-threonine 3-dehydrogenase; Validated	96.68
PRK13304	265	L-aspartate dehydrogenase; Reviewed	96.66
cd08259	332	Zn_ADH5 Alcohol dehydrogenases of the MDR family.	96.66
COG0281	432	SfcA Malic enzyme [Energy production and conversio	96.65
COG2085	211	Predicted dinucleotide-binding enzymes [General fu	96.64
cd05286	320	QOR2 Quinone oxidoreductase (QOR). Quinone oxidore	96.61
PRK13403	335	ketol-acid reductoisomerase; Provisional	96.61
PRK09310	477	aroDE bifunctional 3-dehydroquinate dehydratase/sh	96.59
PRK13771	334	putative alcohol dehydrogenase; Provisional	96.58
cd08244	324	MDR_enoyl_red Possible enoyl reductase. Member ide	96.57
cd08249	339	enoyl_reductase_like enoyl_reductase_like. Member	96.56
cd00762	254	NAD_bind_malic_enz NAD(P) binding domain of malic	96.56
cd08262	341	Zn_ADH8 Alcohol dehydrogenases of the MDR family.	96.55
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	96.53
cd08250	329	Mgc45594_like Mgc45594 gene product and other MDR	96.52
COG2130	340	Putative NADP-dependent oxidoreductases [General f	96.51
PTZ00354	334	alcohol dehydrogenase; Provisional	96.51
PRK06199	379	ornithine cyclodeaminase; Validated	96.51
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	96.49
PF10727	127	Rossmann-like: Rossmann-like domain; InterPro: IPR	96.48
cd08290	341	ETR 2-enoyl thioester reductase (ETR). 2-enoyl thi	96.48
cd05278	347	FDH_like Formaldehyde dehydrogenases. Formaldehyde	96.45
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	96.45
TIGR02817	336	adh_fam_1 zinc-binding alcohol dehydrogenase famil	96.45
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	96.43
cd08248	350	RTN4I1 Human Reticulon 4 Interacting Protein 1. Hu	96.43
PRK13301	267	putative L-aspartate dehydrogenase; Provisional	96.41
cd08236	343	sugar_DH NAD(P)-dependent sugar dehydrogenases. Th	96.39
cd08235	343	iditol_2_DH_like L-iditol 2-dehydrogenase. Putativ	96.37
smart00829	288	PKS_ER Enoylreductase. Enoylreductase in Polyketid	96.36
PRK00676	338	hemA glutamyl-tRNA reductase; Validated	96.36
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	96.35
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	96.33
cd08261	337	Zn_ADH7 Alcohol dehydrogenases of the MDR family.	96.33
PRK03562	621	glutathione-regulated potassium-efflux system prot	96.3
cd08288	324	MDR_yhdh Yhdh putative quinone oxidoreductases. Yh	96.28
PRK10669	558	putative cation:proton antiport protein; Provision	96.27
PRK06928	277	pyrroline-5-carboxylate reductase; Reviewed	96.25
PRK07634	245	pyrroline-5-carboxylate reductase; Reviewed	96.25
cd05195	293	enoyl_red enoyl reductase of polyketide synthase.	96.22
KOG4230|consensus	935		96.21
PF03949	255	Malic_M: Malic enzyme, NAD binding domain; InterPr	96.19
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	96.17
PRK05562	223	precorrin-2 dehydrogenase; Provisional	96.16
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	96.16
PRK14027	283	quinate/shikimate dehydrogenase; Provisional	96.15
cd08241	323	QOR1 Quinone oxidoreductase (QOR). QOR catalyzes t	96.15
cd08279	363	Zn_ADH_class_III Class III alcohol dehydrogenase.	96.14
cd05276	323	p53_inducible_oxidoreductase PIG3 p53-inducible qu	96.13
PRK03659	601	glutathione-regulated potassium-efflux system prot	96.13
COG0169	283	AroE Shikimate 5-dehydrogenase [Amino acid transpo	96.07
PRK12548	289	shikimate 5-dehydrogenase; Provisional	96.06
PRK01710	458	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.05
PRK09496	453	trkA potassium transporter peripheral membrane com	96.03
PRK11730	715	fadB multifunctional fatty acid oxidation complex	96.01
cd08273	331	MDR8 Medium chain dehydrogenases/reductase (MDR)/z	96.0
TIGR01921	324	DAP-DH diaminopimelate dehydrogenase. This model r	95.99
PF01408	120	GFO_IDH_MocA: Oxidoreductase family, NAD-binding R	95.99
PRK04148	134	hypothetical protein; Provisional	95.99
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	95.98
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.97
PRK12749	288	quinate/shikimate dehydrogenase; Reviewed	95.96
TIGR02440	699	FadJ fatty oxidation complex, alpha subunit FadJ.	95.96
cd08276	336	MDR7 Medium chain dehydrogenases/reductase (MDR)/z	95.95
PF13460	183	NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X	95.95
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	95.95
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.94
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	95.94
PLN02520	529	bifunctional 3-dehydroquinate dehydratase/shikimat	95.93
COG1250	307	FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo	95.91
PF04016	147	DUF364: Domain of unknown function (DUF364); Inter	95.9
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	95.89
cd05289	309	MDR_like_2 alcohol dehydrogenase and quinone reduc	95.86
cd08267	319	MDR1 Medium chain dehydrogenases/reductase (MDR)/z	95.85
PTZ00082	321	L-lactate dehydrogenase; Provisional	95.81
PRK00048	257	dihydrodipicolinate reductase; Provisional	95.79
cd08253	325	zeta_crystallin Zeta-crystallin with NADP-dependen	95.78
cd08268	328	MDR2 Medium chain dehydrogenases/reductase (MDR)/z	95.76
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	95.76
TIGR02441	737	fa_ox_alpha_mit fatty acid oxidation complex, alph	95.73
PTZ00117	319	malate dehydrogenase; Provisional	95.73
PRK11154	708	fadJ multifunctional fatty acid oxidation complex	95.73
PRK08324	681	short chain dehydrogenase; Validated	95.71
PRK10637	457	cysG siroheme synthase; Provisional	95.68
cd08266	342	Zn_ADH_like1 Alcohol dehydrogenases of the MDR fam	95.66
PRK12814	652	putative NADPH-dependent glutamate synthase small	95.65
PRK13529	563	malate dehydrogenase; Provisional	95.64
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	95.62
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	95.62
PLN02353	473	probable UDP-glucose 6-dehydrogenase	95.62
KOG1197|consensus	336		95.58
PF01113	124	DapB_N: Dihydrodipicolinate reductase, N-terminus;	95.58
PRK00141	473	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.57
cd08272	326	MDR6 Medium chain dehydrogenases/reductase (MDR)/z	95.57
TIGR00670	301	asp_carb_tr aspartate carbamoyltransferase. Ornith	95.57
COG5322	351	Predicted dehydrogenase [General function predicti	95.57
KOG2380|consensus	480		95.55
TIGR02824	325	quinone_pig3 putative NAD(P)H quinone oxidoreducta	95.52
PRK12550	272	shikimate 5-dehydrogenase; Reviewed	95.5
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.47
TIGR01763	305	MalateDH_bact malate dehydrogenase, NAD-dependent.	95.46
COG0771	448	MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas	95.4
PLN03129	581	NADP-dependent malic enzyme; Provisional	95.38
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	95.36
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	95.36
COG1648	210	CysG Siroheme synthase (precorrin-2 oxidase/ferroc	95.36
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	95.36
PRK09496	453	trkA potassium transporter peripheral membrane com	95.34
PTZ00317	559	NADP-dependent malic enzyme; Provisional	95.32
KOG1201|consensus	300		95.3
PF03435	386	Saccharop_dh: Saccharopine dehydrogenase ; InterPr	95.29
cd00650	263	LDH_MDH_like NAD-dependent, lactate dehydrogenase-	95.28
PF03447	117	NAD_binding_3: Homoserine dehydrogenase, NAD bindi	95.28
PRK00683	418	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.27
PRK00856	305	pyrB aspartate carbamoyltransferase catalytic subu	95.18
PF00056	141	Ldh_1_N: lactate/malate dehydrogenase, NAD binding	95.15
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	95.15
cd01339	300	LDH-like_MDH L-lactate dehydrogenase-like malate d	95.06
PRK00779	304	ornithine carbamoyltransferase; Provisional	95.05
PRK06223	307	malate dehydrogenase; Reviewed	95.04
PRK01390	460	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.03
cd00300	300	LDH_like L-lactate dehydrogenase-like enzymes. Mem	95.0
PLN02527	306	aspartate carbamoyltransferase	94.99
cd08251	303	polyketide_synthase polyketide synthase. Polyketid	94.85
COG1023	300	Gnd Predicted 6-phosphogluconate dehydrogenase [Ca	94.84
COG0677	436	WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas	94.83
TIGR00658	304	orni_carb_tr ornithine carbamoyltransferase. Most	94.83
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	94.81
PRK04207	341	glyceraldehyde-3-phosphate dehydrogenase; Provisio	94.79
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	94.77
PRK08265	261	short chain dehydrogenase; Provisional	94.76
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	94.74
COG0026	375	PurK Phosphoribosylaminoimidazole carboxylase (NCA	94.73
cd05293	312	LDH_1 A subgroup of L-lactate dehydrogenases. L-la	94.69
PRK13303	265	L-aspartate dehydrogenase; Provisional	94.63
PRK06182	273	short chain dehydrogenase; Validated	94.61
PLN02602	350	lactate dehydrogenase	94.56
PRK05600	370	thiamine biosynthesis protein ThiF; Validated	94.53
PRK04690	468	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.51
PRK01368	454	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.49
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	94.49
PRK01713	334	ornithine carbamoyltransferase; Provisional	94.48
cd05212	140	NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom	94.45
PRK05993	277	short chain dehydrogenase; Provisional	94.42
PRK12439	341	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	94.41
CHL00194	317	ycf39 Ycf39; Provisional	94.39
PRK00421	461	murC UDP-N-acetylmuramate--L-alanine ligase; Provi	94.38
PRK03806	438	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.38
KOG0089|consensus	309		94.32
PRK08300	302	acetaldehyde dehydrogenase; Validated	94.26
cd08271	325	MDR5 Medium chain dehydrogenases/reductase (MDR)/z	94.24
PRK05786	238	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	94.23
PRK14620	326	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	94.21
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	94.17
PRK06392	326	homoserine dehydrogenase; Provisional	94.15
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	94.13
PLN00106	323	malate dehydrogenase	94.13
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	94.11
PRK06349	426	homoserine dehydrogenase; Provisional	94.11
PRK12742	237	oxidoreductase; Provisional	94.11
PRK04308	445	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.09
PLN03209	576	translocon at the inner envelope of chloroplast su	94.07
PRK15116	268	sulfur acceptor protein CsdL; Provisional	94.06
PRK03803	448	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.01
PF00185	158	OTCace: Aspartate/ornithine carbamoyltransferase,	93.99
PRK05597	355	molybdopterin biosynthesis protein MoeB; Validated	93.95
PRK12779	944	putative bifunctional glutamate synthase subunit b	93.93
PRK12557	342	H(2)-dependent methylenetetrahydromethanopterin de	93.87
cd08247	352	AST1_like AST1 is a cytoplasmic protein associated	93.83
PF02153	258	PDH: Prephenate dehydrogenase; InterPro: IPR003099	93.81
PLN02342	348	ornithine carbamoyltransferase	93.79
PRK02102	331	ornithine carbamoyltransferase; Validated	93.79
PRK07326	237	short chain dehydrogenase; Provisional	93.78
PRK14190	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	93.66
PRK08223	287	hypothetical protein; Validated	93.63
COG4221	246	Short-chain alcohol dehydrogenase of unknown speci	93.57
PRK05872	296	short chain dehydrogenase; Provisional	93.55

>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]

Probab=100.00  E-value=9e-76  Score=595.67  Aligned_cols=287  Identities=49%  Similarity=0.795  Sum_probs=281.8

Q ss_pred             CccHHHHHHHhCCCCCCCCceeeceecccHHhh-----------------------------------------------
Q psy4626           1 MPGIMALRKRAGDDKPLKNARIVGCTHINAQTA-----------------------------------------------   33 (542)
Q Consensus         1 MP~l~~l~~~~~~~~pl~G~~i~~~lh~~~~tA-----------------------------------------------   33 (542)
                      ||+|++||++|..+|||+|.||++|+|+|+|||                                               
T Consensus        27 MP~L~~iR~~f~~~kPlkG~~i~~~lH~t~kTAvLietL~a~GAeV~~a~cNplSTqD~vaaAl~~~~GipVfA~kGe~~  106 (420)
T COG0499          27 MPVLMAIREEFAEEKPLKGARIAGCLHMTAKTAVLIETLKAGGAEVRWASCNPLSTQDDVAAALAAKEGIPVFAWKGETL  106 (420)
T ss_pred             ChHHHHHHHHHhhcCCCCccEEEEEEeehHHHHHHHHHHHhcCceEEEecCCCCcccHHHHHHHhhccCceEEEEcCCCH
Confidence            999999999999999999999999999999998                                               


Q ss_pred             -----------------------------------------------------------hcccccceeecCchhhhHHHH
Q psy4626          34 -----------------------------------------------------------AGKLTVPAMNVNDSVTKTKFD   54 (542)
Q Consensus        34 -----------------------------------------------------------~~~L~~PV~~vn~s~~K~~fd   54 (542)
                                                                                 +|.|+||+|+||||.+|++||
T Consensus       107 eeY~~~~~~vl~~~p~iiiDDG~D~~~~vh~~~~~l~~~i~G~tEETTTGV~RL~am~~~G~L~fPai~VNDs~tK~~FD  186 (420)
T COG0499         107 EEYYEAIDQVLDWEPNIIIDDGGDLTKLVHLERPELLDAIKGGTEETTTGVHRLRAMEKDGVLKFPAINVNDSVTKSLFD  186 (420)
T ss_pred             HHHHHHHHHHhCcCCCEEEecCcceeeeeecccHHHHHHhcCCCcccchHHHHHHHHHhcCCcccceEeecchhhhcccc
Confidence                                                                       788999999999999999999


Q ss_pred             hHHHHHHHHHHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCCc
Q psy4626          55 NLYMCRESIIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVD  134 (542)
Q Consensus        55 ~~~g~~~s~~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~aD  134 (542)
                      |+|||+||.|++|+|+|+..++||+|+|+|||+||+++|++|+++||+|+|+|+||.|+.+|.++||++++++++.+.+|
T Consensus       187 NrYGtgqS~~DgI~RaTn~liaGK~vVV~GYG~vGrG~A~~~rg~GA~ViVtEvDPI~AleA~MdGf~V~~m~~Aa~~gD  266 (420)
T COG0499         187 NRYGTGQSLLDGILRATNVLLAGKNVVVAGYGWVGRGIAMRLRGMGARVIVTEVDPIRALEAAMDGFRVMTMEEAAKTGD  266 (420)
T ss_pred             cccccchhHHHHHHhhhceeecCceEEEecccccchHHHHHhhcCCCeEEEEecCchHHHHHhhcCcEEEEhHHhhhcCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEcCCCcccCCHHHHhccCCCeEEEeccCCCcccChHhhcCCCcceeeeccceeeEecCCCCEEEEecCCCcccccCC
Q psy4626         135 IVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIVLLAEGRLVNLSCS  214 (542)
Q Consensus       135 vVi~atG~~~lI~~e~l~~mk~GailvnvG~g~~eid~~aL~~~~l~v~~~~~~v~~y~~~dg~~I~LLa~GrLvnl~~~  214 (542)
                      |+|+|||++++|+.++|..||+|++++|+|||++|||+..|.....++.++++++++|.++||+.++||++|||+||+++
T Consensus       267 ifiT~TGnkdVi~~eh~~~MkDgaIl~N~GHFd~EI~~~~L~~~~~~~~~vr~~V~ey~l~~Gkri~llaeGRLvNLa~a  346 (420)
T COG0499         267 IFVTATGNKDVIRKEHFEKMKDGAILANAGHFDVEIDVAGLEELAVEKREVRPQVDEYELPDGKRIILLAEGRLVNLAAA  346 (420)
T ss_pred             EEEEccCCcCccCHHHHHhccCCeEEecccccceeccHHHHHHhhhhHhccccCceEEEcCCCCEEEEEecceeeeeccC
Confidence            99999999999999999999999999999999999999999977888999999999999999999999999999999999


Q ss_pred             -CChhHHHhhHHHHHHHHHHHHhcCCCCCCCCccccCChhhHHHHHHhcCCccccccccccHHHHhhcCCCCCCC
Q psy4626         215 -SLPSFVVSITACTQALALIELFNAPSGRYKSDVYLLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGP  288 (542)
Q Consensus       215 -thp~~vmd~sfa~q~la~~~L~~~~~~~~~~gv~~lp~~~d~~VA~l~L~~lg~~i~~lt~~~a~~lg~~e~~p  288 (542)
                       +||++|||+||++|+|+++|||+++ ++|.++||.||+++|++||+++|++||++||+||++|++||++|+.+|
T Consensus       347 ~GHPs~VMd~SFanQaLa~~~L~~n~-~~~~~~Vy~lP~~lD~~VArl~L~~~G~~i~~Lt~eQ~~Yl~~w~~Gt  420 (420)
T COG0499         347 TGHPSEVMDMSFANQALAQIYLVKNH-GKLEPGVYRLPKELDEEVARLKLEAMGIELDELTEEQAEYLGSWEEGT  420 (420)
T ss_pred             CCCcHHHhhhhHHHHHHHHHHHHhcc-cccCCceeeCcHHHHHHHHHHHHHHhCceeeecCHHHHHHhCCCCCCC
Confidence             4999999999999999999999998 899999999999999999999999999999999999999999999876

>KOG1370|consensus

Probab=100.00  E-value=3.6e-72  Score=557.27  Aligned_cols=296  Identities=64%  Similarity=1.077  Sum_probs=290.4

Q ss_pred             CccHHHHHHHhCCCCCCCCceeeceecccHHhh-----------------------------------------------
Q psy4626           1 MPGIMALRKRAGDDKPLKNARIVGCTHINAQTA-----------------------------------------------   33 (542)
Q Consensus         1 MP~l~~l~~~~~~~~pl~G~~i~~~lh~~~~tA-----------------------------------------------   33 (542)
                      ||+||++|++|+.+|||+|+||+||+|+|++||                                               
T Consensus        30 MPglma~r~r~~~skPlkgArI~GClH~tvqTAVLiETLv~LGAev~WssCNIfSTQdhaAAAiA~~g~Pvfawkget~e  109 (434)
T KOG1370|consen   30 MPGLMALRKRYGPSKPLKGARIAGCLHMTVQTAVLIETLVALGAEVRWSSCNIFSTQDHAAAAIAEAGVPVFAWKGETEE  109 (434)
T ss_pred             cchHHHHHHHhccCCCCCCCeeeeeeeeehhHHHHHHHHHHhCceeeeeecceecchhHHHHHHHhcCCceeeeccccch
Confidence            999999999999999999999999999999998                                               


Q ss_pred             -------------------------------------------------------------hcccccceeecCchhhhHH
Q psy4626          34 -------------------------------------------------------------AGKLTVPAMNVNDSVTKTK   52 (542)
Q Consensus        34 -------------------------------------------------------------~~~L~~PV~~vn~s~~K~~   52 (542)
                                                                                   .|.|.+|.++||||++|++
T Consensus       110 e~~wcie~~~~~~g~~~nmIlDdggd~t~l~h~kyp~~~~~i~GiseEttTGVH~Lykm~k~G~L~VPAiNVNDSVTKsK  189 (434)
T KOG1370|consen  110 EYWWCIERCLNKDGWQPNMILDDGGDLTHLVHEKYPQMFKKIRGISEETTTGVHNLYKMSKNGKLKVPAINVNDSVTKSK  189 (434)
T ss_pred             hhhhhhhhhhccCCCCcceeecCCCchhhhhhhhhHHHHhhhcccchhhhhhHHHHHHHHhCCceecceeeccchhhhhh
Confidence                                                                         7899999999999999999


Q ss_pred             HHhHHHHHHHHHHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHHHHhcC
Q psy4626          53 FDNLYMCRESIIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRT  132 (542)
Q Consensus        53 fd~~~g~~~s~~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~  132 (542)
                      |||.|||++|+.++++|+++.+++||.++|.|||.+|+++|++||++|++|+|+++||+.+++|.++||++++++|++++
T Consensus       190 FDnLygcreSl~DgikraTDvM~aGKv~Vv~GYGdVGKgCaqaLkg~g~~VivTEiDPI~ALQAaMeG~~V~tm~ea~~e  269 (434)
T KOG1370|consen  190 FDNLYGCRESLLDGIKRATDVMIAGKVAVVCGYGDVGKGCAQALKGFGARVIVTEIDPICALQAAMEGYEVTTLEEAIRE  269 (434)
T ss_pred             ccccccchhhhhhhhhhhhhheecccEEEEeccCccchhHHHHHhhcCcEEEEeccCchHHHHHHhhccEeeeHHHhhhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcEEEEcCCCcccCCHHHHhccCCCeEEEeccCCCcccChHhhcCCCcceeeeccceeeEecCCCCEEEEecCCCccccc
Q psy4626         133 VDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIVLLAEGRLVNLS  212 (542)
Q Consensus       133 aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g~~eid~~aL~~~~l~v~~~~~~v~~y~~~dg~~I~LLa~GrLvnl~  212 (542)
                      +||++++||++.+|..++|++||++++++|+||++.|||+.+|...++++..+++++++|.+|+|+.|.||++|||+||+
T Consensus       270 ~difVTtTGc~dii~~~H~~~mk~d~IvCN~Ghfd~EiDv~~L~~~~~~~~~vk~QvD~~~~~~gr~iIlLAeGRLvNL~  349 (434)
T KOG1370|consen  270 VDIFVTTTGCKDIITGEHFDQMKNDAIVCNIGHFDTEIDVKWLNTPALTWENVKPQVDRYILPNGKHIILLAEGRLVNLG  349 (434)
T ss_pred             CCEEEEccCCcchhhHHHHHhCcCCcEEeccccccceeehhhccCCcceeeecccccceeeccCCcEEEEEecCceeecc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCC-ChhHHHhhHHHHHHHHHHHHhcCCCCCCCCccccCChhhHHHHHHhcCCccccccccccHHHHhhcCCCCCCCCCC
Q psy4626         213 CSS-LPSFVVSITACTQALALIELFNAPSGRYKSDVYLLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKP  291 (542)
Q Consensus       213 ~~t-hp~~vmd~sfa~q~la~~~L~~~~~~~~~~gv~~lp~~~d~~VA~l~L~~lg~~i~~lt~~~a~~lg~~e~~p~~a  291 (542)
                      |++ ||+++|+.||++|+|+|++||+++.++|+.+||.||+.+||.||++||.+||.++++||++||+|||+...+|||+
T Consensus       350 CatghpSFvmS~sftnQvlAqIeLwt~p~~kY~~~V~~LPKklDE~VA~lHL~kl~~kLTkLt~~Qa~YlG~~~~gPfKp  429 (434)
T KOG1370|consen  350 CATGHPSFVMSNSFTNQVLAQIELWTAPEGKYKVGVYVLPKKLDEYVASLHLGKLGAKLTKLTDKQAKYLGLSKDGPFKP  429 (434)
T ss_pred             cccCCCceEEecchHHHHHHHHHHhcCCCCccccceEecchhhHHHHHHhhhhhhchhhhhhhHHHHHhcCCCcCCCCCC
Confidence            996 9999999999999999999999987799999999999999999999999999999999999999999999999999


Q ss_pred             Ccccc
Q psy4626         292 SYYSM  296 (542)
Q Consensus       292 ~ea~m  296 (542)
                      ..+++
T Consensus       430 dhYRY  434 (434)
T KOG1370|consen  430 DHYRY  434 (434)
T ss_pred             CCCCC
Confidence            87653

>PLN02494 adenosylhomocysteinase

Probab=100.00  E-value=4.8e-64  Score=535.71  Aligned_cols=259  Identities=51%  Similarity=0.909  Sum_probs=247.2

Q ss_pred             ccccceeecCchhhhHHHHhHHHHHHHHHHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhh
Q psy4626          36 KLTVPAMNVNDSVTKTKFDNLYMCRESIIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQ  115 (542)
Q Consensus        36 ~L~~PV~~vn~s~~K~~fd~~~g~~~s~~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~  115 (542)
                      .|.+||++||||.+|++|||+|||+||+|++++|.++..+.|++|+|+|||+||+++|++++++|++|+++|++|.++.+
T Consensus       213 ~L~~Pvi~vnds~~K~~fDn~yGtgqS~~d~i~r~t~i~LaGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~e  292 (477)
T PLN02494        213 TLLFPAINVNDSVTKSKFDNLYGCRHSLPDGLMRATDVMIAGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQ  292 (477)
T ss_pred             CCCCCEEEEcChhhhhhhhccccccccHHHHHHHhcCCccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHH
Confidence            48999999999999999999999999999999999999899999999999999999999999999999999999998888


Q ss_pred             hhcCCceeeCHHHHhcCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCCCcccChHhhcCCC-cceeeeccceeeEec
Q psy4626         116 ACMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPD-LTWEKVRSQVDHVIW  194 (542)
Q Consensus       116 A~~~G~~v~~l~e~l~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g~~eid~~aL~~~~-l~v~~~~~~v~~y~~  194 (542)
                      +.+.|+.+++++++++.+|+||+|+|++++++.++|+.||+|++++|+||++.+||..+|.... +...+++++++.|.+
T Consensus       293 A~~~G~~vv~leEal~~ADVVI~tTGt~~vI~~e~L~~MK~GAiLiNvGr~~~eID~~aL~~~~~l~~~~i~~~vd~y~~  372 (477)
T PLN02494        293 ALMEGYQVLTLEDVVSEADIFVTTTGNKDIIMVDHMRKMKNNAIVCNIGHFDNEIDMLGLETYPGVKRITIKPQTDRWVF  372 (477)
T ss_pred             HHhcCCeeccHHHHHhhCCEEEECCCCccchHHHHHhcCCCCCEEEEcCCCCCccCHHHHhhccccceeccCCCceEEEc
Confidence            8899999889999999999999999999999889999999999999999999999999998653 777888899999999


Q ss_pred             CC-CCEEEEecCCCcccccCC-CChhHHHhhHHHHHHHHHHHHhcC--CCCCCCCccccCChhhHHHHHHhcCCcccccc
Q psy4626         195 PD-GKRIVLLAEGRLVNLSCS-SLPSFVVSITACTQALALIELFNA--PSGRYKSDVYLLPKKMDEYVASLHLPTFDAHL  270 (542)
Q Consensus       195 ~d-g~~I~LLa~GrLvnl~~~-thp~~vmd~sfa~q~la~~~L~~~--~~~~~~~gv~~lp~~~d~~VA~l~L~~lg~~i  270 (542)
                      +| |+.|+||++||++||+|+ +||++|||+||++|+|++++||++  . ++|+++||.||+++|++||++||++||++|
T Consensus       373 ~d~g~~i~ll~eGrlvNl~~~~GhP~evmd~sFa~Q~la~~~l~~~~~~-~~~~~~v~~lP~~~D~~vA~~~L~~~g~~~  451 (477)
T PLN02494        373 PDTGSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWNEKKS-GKYEKKVYVLPKHLDEKVAALHLGKLGAKL  451 (477)
T ss_pred             CCCCCEEEEEeCCccccccCCCCCCcceeeHHHHHHHHHHHHHHhcccc-cccCCCcEECCHHHHHHHHHHHHHHcCCcc
Confidence            99 999999999999999999 599999999999999999999998  4 689999999999999999999999999999


Q ss_pred             ccccHHHHhhcCCCCCCCCCCCccc
Q psy4626         271 TELSDEQAKYMGLNKAGPFKPSYYS  295 (542)
Q Consensus       271 ~~lt~~~a~~lg~~e~~p~~a~ea~  295 (542)
                      |+||++|++||++...+|||.-.++
T Consensus       452 ~~lt~~Q~~yl~~~~~gp~k~~~y~  476 (477)
T PLN02494        452 TKLSKDQADYINVPVEGPYKPAHYR  476 (477)
T ss_pred             ccCCHHHHHhcCCCcCCCCCccccC
Confidence            9999999999999999999987654

>TIGR00936 ahcY adenosylhomocysteinase

Probab=100.00  E-value=2.4e-62  Score=518.96  Aligned_cols=287  Identities=45%  Similarity=0.742  Sum_probs=274.6

Q ss_pred             CccHHHHHHHhCCCCCCCCceeeceecccHHhh-----------------------------------------------
Q psy4626           1 MPGIMALRKRAGDDKPLKNARIVGCTHINAQTA-----------------------------------------------   33 (542)
Q Consensus         1 MP~l~~l~~~~~~~~pl~G~~i~~~lh~~~~tA-----------------------------------------------   33 (542)
                      ||+|++++++|..+|||+|.||++|+|+|+|||                                               
T Consensus        14 mp~l~~~~~~~~~~~pl~G~~i~~~~hl~~~Ta~l~~~L~~~GA~v~~~~~np~stqd~vaaaL~~~gi~v~a~~~~~~~   93 (406)
T TIGR00936        14 MPVLMRIRERFSEEKPLKGARIAACLHVTVETAVLIETLVAGGAEVAWTSCNPLSTQDDVAAALAKAGIPVFAWRGETNE   93 (406)
T ss_pred             CHHHHHHHHHHhccCCCCCCEEEEEEechHHHHHHHHHHHHcCCEEEEEccCCccccHHHHHHHHhCCceEEEecCCCHH
Confidence            999999999999999999999999999999998                                               


Q ss_pred             ----------------------------------------------------------hcccccceeecCchhhhHHHHh
Q psy4626          34 ----------------------------------------------------------AGKLTVPAMNVNDSVTKTKFDN   55 (542)
Q Consensus        34 ----------------------------------------------------------~~~L~~PV~~vn~s~~K~~fd~   55 (542)
                                                                                ++.|.+||++||||.+|++|||
T Consensus        94 ey~~~~~~~l~~~p~~iiDdGgdl~~~~~~~~~~~~~~~~G~~EeTttGv~rl~~~~~~~~L~~Pvi~vnds~~K~~fDn  173 (406)
T TIGR00936        94 EYYWAIEQVLDHEPNIIIDDGADLIFLLHTERPELLEKIIGGSEETTTGVIRLRAMEAEGVLKFPAINVNDAYTKSLFDN  173 (406)
T ss_pred             HHHHHHHHHhcCCCCEEEecccHHHHHHHHhhhhhhhccEEEeecchHHHHHHHHHHHcCCCCCcEEEecchhhchhhhc
Confidence                                                                      4679999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCCcE
Q psy4626          56 LYMCRESIIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDI  135 (542)
Q Consensus        56 ~~g~~~s~~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~aDv  135 (542)
                      +|||++|.|+++.|+++..+.|++|+|+|||+||+.+|+.|+++|++|+++|+||.|+.++.+.|+.+.+++++++.+|+
T Consensus       174 ~yg~g~s~~~~i~r~t~~~l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~~G~~v~~leeal~~aDV  253 (406)
T TIGR00936       174 RYGTGQSTIDGILRATNLLIAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAAMDGFRVMTMEEAAKIGDI  253 (406)
T ss_pred             ccccchhHHHHHHHhcCCCCCcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHhcCCEeCCHHHHHhcCCE
Confidence            99999999999999988889999999999999999999999999999999999999988899999998889999999999


Q ss_pred             EEEcCCCcccCCHHHHhccCCCeEEEeccCCCcccChHhhcCCCcceeeeccceeeEecCCCCEEEEecCCCcccccCCC
Q psy4626         136 VVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIVLLAEGRLVNLSCSS  215 (542)
Q Consensus       136 Vi~atG~~~lI~~e~l~~mk~GailvnvG~g~~eid~~aL~~~~l~v~~~~~~v~~y~~~dg~~I~LLa~GrLvnl~~~t  215 (542)
                      ||+++|++++++.++|..||+|++++|+||++.|+|.++|.....+..+++++++.|.+|||+.|++|++||++||++++
T Consensus       254 VItaTG~~~vI~~~~~~~mK~GailiN~G~~~~eId~~aL~~~~~~~~~~~~~v~~~~~~~g~~i~ll~~GrlvNl~~~~  333 (406)
T TIGR00936       254 FITATGNKDVIRGEHFENMKDGAIVANIGHFDVEIDVKALEELAVEKRNVRPQVDEYILKDGRRIYLLAEGRLVNLAAAE  333 (406)
T ss_pred             EEECCCCHHHHHHHHHhcCCCCcEEEEECCCCceeCHHHHHHHHhhccccccceEEEEeCCCCEEEEEeCCceecccCCC
Confidence            99999999999888999999999999999999999999997655566678889999999999999999999999999994


Q ss_pred             -ChhHHHhhHHHHHHHHHHHHhcCCCCCCCCccccCChhhHHHHHHhcCCccccccccccHHHHhhcCCCCCCC
Q psy4626         216 -LPSFVVSITACTQALALIELFNAPSGRYKSDVYLLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGP  288 (542)
Q Consensus       216 -hp~~vmd~sfa~q~la~~~L~~~~~~~~~~gv~~lp~~~d~~VA~l~L~~lg~~i~~lt~~~a~~lg~~e~~p  288 (542)
                       ||+++||+||++|+|++++|++++ ++++++||.||+++|++||++||++||++||+||++|++||++|+.+|
T Consensus       334 ghp~~vmd~sfa~q~la~~~l~~~~-~~~~~~v~~lp~~~d~~va~~~l~~~g~~~~~lt~~q~~y~~~~~~g~  406 (406)
T TIGR00936       334 GHPSEVMDMSFANQALAAEYLWKNH-DKLEPGVYRLPKELDEMVARLKLEAMGIEIDELTEEQKEYLGSWEEGT  406 (406)
T ss_pred             CCcceeeCHHHHHHHHHHHHHHhcc-cccCCCeEECCHHHHHHHHHHHHHHcCceeccCCHHHHHHhcCCcCCC
Confidence             999999999999999999999987 799999999999999999999999999999999999999999998765

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=100.00  E-value=4.6e-61  Score=514.07  Aligned_cols=261  Identities=54%  Similarity=0.928  Sum_probs=248.8

Q ss_pred             cccccceeecCchhhhHHHHhHHHHHHHHHHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhh
Q psy4626          35 GKLTVPAMNVNDSVTKTKFDNLYMCRESIIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICAL  114 (542)
Q Consensus        35 ~~L~~PV~~vn~s~~K~~fd~~~g~~~s~~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~  114 (542)
                      +.|.+||++||++.+|+.||+.||+++|+++++.|.++..+.|++|+|+|+|+||+.+|++|+++|++|+++|++|.+..
T Consensus       212 g~L~iPV~nv~d~~tk~~aD~~~G~~~s~~d~~~R~~~~~LaGKtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~  291 (476)
T PTZ00075        212 GELLFPAINVNDSVTKSKFDNIYGCRHSLIDGIFRATDVMIAGKTVVVCGYGDVGKGCAQALRGFGARVVVTEIDPICAL  291 (476)
T ss_pred             CCCCceEEEeCCcchHHHHHHHHHHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhHH
Confidence            45889999999999999999999999999999999999999999999999999999999999999999999999999887


Q ss_pred             hhhcCCceeeCHHHHhcCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCCCcccChHhhcCCC-cceeeeccceeeEe
Q psy4626         115 QACMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPD-LTWEKVRSQVDHVI  193 (542)
Q Consensus       115 ~A~~~G~~v~~l~e~l~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g~~eid~~aL~~~~-l~v~~~~~~v~~y~  193 (542)
                      ++.++|+.+.+++++++.+|+||+++|++++|+.++|++||+|++++|+||++.|+++.+|.... +++.++++.+..|+
T Consensus       292 ~A~~~G~~~~~leell~~ADIVI~atGt~~iI~~e~~~~MKpGAiLINvGr~d~Ei~i~aL~~~~~vdv~evep~v~~~~  371 (476)
T PTZ00075        292 QAAMEGYQVVTLEDVVETADIFVTATGNKDIITLEHMRRMKNNAIVGNIGHFDNEIQVAELEAYPGIEIVEIKPQVDRYT  371 (476)
T ss_pred             HHHhcCceeccHHHHHhcCCEEEECCCcccccCHHHHhccCCCcEEEEcCCCchHHhHHHHHhcCCceeecccCCCCeEE
Confidence            78888999999999999999999999999999999999999999999999999999999988644 88899999999999


Q ss_pred             cCCCCEEEEecCCCcccccCCC-ChhHHHhhHHHHHHHHHHHHhcCCCC--CCCCccccCChhhHHHHHHhcCCcccccc
Q psy4626         194 WPDGKRIVLLAEGRLVNLSCSS-LPSFVVSITACTQALALIELFNAPSG--RYKSDVYLLPKKMDEYVASLHLPTFDAHL  270 (542)
Q Consensus       194 ~~dg~~I~LLa~GrLvnl~~~t-hp~~vmd~sfa~q~la~~~L~~~~~~--~~~~gv~~lp~~~d~~VA~l~L~~lg~~i  270 (542)
                      +|||+.|+||++||++||+|++ ||++|||+||++|+|++++|++++ +  +|+++||.||+++|++||++||++||++|
T Consensus       372 ~~~g~~i~llaeGrlvNl~~~~GhP~~vMd~sfa~Q~la~~~l~~~~-~~~~~~~~v~~lp~~~d~~vA~~~L~~~g~~~  450 (476)
T PTZ00075        372 FPDGKGIILLAEGRLVNLGCATGHPSFVMSNSFTNQVLAQIELWENR-DTGKYPNGVYKLPKELDEKVARLHLKKLGAKL  450 (476)
T ss_pred             eCCCCEEEEEeCCCccccCCCCCCCeeEeeHHHHHHHHHHHHHHhcc-CccccCCceEECCHHHHHHHHHHHHHHcCCcc
Confidence            9999999999999999999994 999999999999999999999987 5  89999999999999999999999999999


Q ss_pred             ccccHHHHhhcCCCCCCCCCCCcccc
Q psy4626         271 TELSDEQAKYMGLNKAGPFKPSYYSM  296 (542)
Q Consensus       271 ~~lt~~~a~~lg~~e~~p~~a~ea~m  296 (542)
                      |+||++|++|||+...+|||.-.+++
T Consensus       451 ~~lt~~q~~yl~~~~~gp~k~~~y~y  476 (476)
T PTZ00075        451 TKLTDKQAEYIGVPVDGPYKSDHYRY  476 (476)
T ss_pred             ccCCHHHHHhcCCCCCCCCCccccCC
Confidence            99999999999999999999876643

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=100.00  E-value=4.1e-61  Score=512.19  Aligned_cols=289  Identities=54%  Similarity=0.912  Sum_probs=278.4

Q ss_pred             CccHHHHHHHhCCCCCCCCceeeceecccHHhh-----------------------------------------------
Q psy4626           1 MPGIMALRKRAGDDKPLKNARIVGCTHINAQTA-----------------------------------------------   33 (542)
Q Consensus         1 MP~l~~l~~~~~~~~pl~G~~i~~~lh~~~~tA-----------------------------------------------   33 (542)
                      ||+|++++++|..+|||+|.||++|+|++++||                                               
T Consensus        30 mp~l~~~~~~~~~~~pl~G~~i~~~~Hl~~~Ta~l~~~L~~~GA~v~~~~~np~Stqd~vaaaL~~~gi~v~a~~~~~~~  109 (425)
T PRK05476         30 MPGLMAIREEFAAEKPLKGARIAGCLHMTIQTAVLIETLKALGAEVRWASCNPFSTQDDVAAALAAAGIPVFAWKGETLE  109 (425)
T ss_pred             CHHHHHHHHHHhccCCCCCCEEEEEEeccccHHHHHHHHHHcCCEEEEEeCCCcccCHHHHHHHHHCCceEEecCCCCHH
Confidence            999999999999999999999999999999998                                               


Q ss_pred             -----------------------------------------------------------hcccccceeecCchhhhHHHH
Q psy4626          34 -----------------------------------------------------------AGKLTVPAMNVNDSVTKTKFD   54 (542)
Q Consensus        34 -----------------------------------------------------------~~~L~~PV~~vn~s~~K~~fd   54 (542)
                                                                                 ++.|.+||++||+|.+|++||
T Consensus       110 ey~~~~~~~l~~~~p~iiiDdGgdl~~~~~~~~~~~~~~i~G~~EeTttGv~rl~~~~~~~~l~~Pv~~vn~s~~K~~~d  189 (425)
T PRK05476        110 EYWECIERALDGHGPNMILDDGGDLTLLVHTERPELLANIKGVTEETTTGVHRLYAMAKDGALKFPAINVNDSVTKSKFD  189 (425)
T ss_pred             HHHHHHHHHhcCCCCCEEEecccHHHHHHHHHhhHhHhccEeeeecchHHHHHHHHHHHcCCCCCCEEecCCcccCcccc
Confidence                                                                       468999999999999999999


Q ss_pred             hHHHHHHHHHHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCCc
Q psy4626          55 NLYMCRESIIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVD  134 (542)
Q Consensus        55 ~~~g~~~s~~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~aD  134 (542)
                      |+|||++|+|++++++++..+.|++|+|+|||+||+.+|+.|+++|++|+++|++|.++.++.+.|+++.+++++++++|
T Consensus       190 n~~gt~~s~~~ai~rat~~~l~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~~G~~v~~l~eal~~aD  269 (425)
T PRK05476        190 NRYGTGESLLDGIKRATNVLIAGKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICALQAAMDGFRVMTMEEAAELGD  269 (425)
T ss_pred             ccHHHHhhhHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHhcCCEecCHHHHHhCCC
Confidence            99999999999999998888899999999999999999999999999999999999998888888999888999999999


Q ss_pred             EEEEcCCCcccCCHHHHhccCCCeEEEeccCCCcccChHhhcCCCcceeeeccceeeEecCCCCEEEEecCCCcccccCC
Q psy4626         135 IVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIVLLAEGRLVNLSCS  214 (542)
Q Consensus       135 vVi~atG~~~lI~~e~l~~mk~GailvnvG~g~~eid~~aL~~~~l~v~~~~~~v~~y~~~dg~~I~LLa~GrLvnl~~~  214 (542)
                      +||+++|++++++.++|+.||+|++++|+|+++.|+++++|........++++++++|.+|||+.++||++||++||+++
T Consensus       270 VVI~aTG~~~vI~~~~~~~mK~GailiNvG~~d~Eid~~~L~~~~~~~~~v~~~v~~y~~~~g~~i~lLa~GrlvNl~~~  349 (425)
T PRK05476        270 IFVTATGNKDVITAEHMEAMKDGAILANIGHFDNEIDVAALEELAVKWREIKPQVDEYTLPDGKRIILLAEGRLVNLGAA  349 (425)
T ss_pred             EEEECCCCHHHHHHHHHhcCCCCCEEEEcCCCCCccChHHHhhcCcceeecCCCceEEEeCCCCEEEEEeCCcccccCCC
Confidence            99999999999988899999999999999999999999999876677888999999999999999999999999999999


Q ss_pred             -CChhHHHhhHHHHHHHHHHHHhcCCCCCCCCccccCChhhHHHHHHhcCCccccccccccHHHHhhcCCCCCCCCC
Q psy4626         215 -SLPSFVVSITACTQALALIELFNAPSGRYKSDVYLLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFK  290 (542)
Q Consensus       215 -thp~~vmd~sfa~q~la~~~L~~~~~~~~~~gv~~lp~~~d~~VA~l~L~~lg~~i~~lt~~~a~~lg~~e~~p~~  290 (542)
                       +||+++||+||++|+|++++|+++. ++++++||.||+++|++||++||++||++||+||++|++||+.|+.+|+|
T Consensus       350 ~ghp~~vmd~sfa~q~l~~~~l~~~~-~~~~~~v~~lp~~~d~~vA~~~l~~~g~~~~~lt~~q~~y~~~~~~g~~~  425 (425)
T PRK05476        350 TGHPSEVMDMSFANQALAQIELFTNR-GKLEPGVYVLPKELDEEVARLKLKALGVKLDELTEEQAEYIGVWVEGPFK  425 (425)
T ss_pred             CCCcceeeCHHHHHHHHHHHHHHhcc-CcCCCCeEECCHHHHHHHHHHHHHHcCCccccCCHHHHHHcCCCcCCCCC
Confidence             5999999999999999999999987 79999999999999999999999999999999999999999999999986

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=100.00  E-value=2.4e-57  Score=482.22  Aligned_cols=287  Identities=55%  Similarity=0.960  Sum_probs=275.1

Q ss_pred             CccHHHHHHHhCCCCCCCCceeeceecccHHhh-----------------------------------------------
Q psy4626           1 MPGIMALRKRAGDDKPLKNARIVGCTHINAQTA-----------------------------------------------   33 (542)
Q Consensus         1 MP~l~~l~~~~~~~~pl~G~~i~~~lh~~~~tA-----------------------------------------------   33 (542)
                      ||+|++++++|..+|||+|.||++|+|+|+|||                                               
T Consensus        18 mp~l~~~~~~~~~~~p~~g~~i~~~~hl~~~ta~l~~~L~~~GA~v~~~~~np~stqd~vaa~l~~~gi~v~a~~~~~~~   97 (413)
T cd00401          18 MPGLMAIREEYGASKPLKGARIAGCLHMTVQTAVLIETLVALGAEVRWSSCNIFSTQDHAAAAIAAAGIPVFAWKGETLE   97 (413)
T ss_pred             CHHHHHHHHHhhccCCCCCCEEEEEEcchHHHHHHHHHHHHcCCEEEEEcCCCccchHHHHHHHHhcCceEEEEcCCCHH
Confidence            999999999999999999999999999999998                                               


Q ss_pred             -------------------------------------------------------------hcccccceeecCchhhhHH
Q psy4626          34 -------------------------------------------------------------AGKLTVPAMNVNDSVTKTK   52 (542)
Q Consensus        34 -------------------------------------------------------------~~~L~~PV~~vn~s~~K~~   52 (542)
                                                                                   ++.|++||++||||.+|++
T Consensus        98 ~y~~~~~~~l~~~~~~p~~i~DdGg~~~~~~~~~~~~~~~~~~G~~EeTttGv~rl~~~~~~~~l~~Pv~~vnds~~K~~  177 (413)
T cd00401          98 EYWWCIEQALKFPDGEPNMILDDGGDLTLLIHKKHPELLPGIRGISEETTTGVHRLYKMEKEGKLKFPAINVNDSVTKSK  177 (413)
T ss_pred             HHHHHHHHHHhccCCCCcEEEecchHHHHHHHhhhhhhhhccEEEeecchHHHHHHHHHHHCCCCCCCEEEecchhhccc
Confidence                                                                         4679999999999999999


Q ss_pred             HHhHHHHHHHHHHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHHHHhcC
Q psy4626          53 FDNLYMCRESIIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRT  132 (542)
Q Consensus        53 fd~~~g~~~s~~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~  132 (542)
                      |||+|||+||+|+++.|.++..+.|++|+|+|+|+||+.+++.++++|++|+++|++|.|+.+|.+.|++++++++++++
T Consensus       178 ~dn~~g~g~s~~~~i~r~t~~~l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~G~~~~~~~e~v~~  257 (413)
T cd00401         178 FDNLYGCRESLIDGIKRATDVMIAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAMEGYEVMTMEEAVKE  257 (413)
T ss_pred             ccccchhchhhHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHhcCCEEccHHHHHcC
Confidence            99999999999999999999889999999999999999999999999999999999999999999999988888888899


Q ss_pred             CcEEEEcCCCcccCCHHHHhccCCCeEEEeccCCCcccChHhhcCCCcceeeeccceeeEecCCCCEEEEecCCCccccc
Q psy4626         133 VDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIVLLAEGRLVNLS  212 (542)
Q Consensus       133 aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g~~eid~~aL~~~~l~v~~~~~~v~~y~~~dg~~I~LLa~GrLvnl~  212 (542)
                      +|+||+|+|++++++.++++.||+|++++|+|+++.++|+..+..+++++.++++++..|.+++|+.|.+|++|+++|+.
T Consensus       258 aDVVI~atG~~~~i~~~~l~~mk~GgilvnvG~~~~eId~~~L~~~el~i~g~~~~~~~~~~~~g~aI~LLa~Grlvnl~  337 (413)
T cd00401         258 GDIFVTTTGNKDIITGEHFEQMKDGAIVCNIGHFDVEIDVKGLKENAVEVVNIKPQVDRYELPDGRRIILLAEGRLVNLG  337 (413)
T ss_pred             CCEEEECCCCHHHHHHHHHhcCCCCcEEEEeCCCCCccCHHHHHhhccEEEEccCCcceEEcCCcchhhhhhCcCCCCCc
Confidence            99999999999999877799999999999999999999999999889999999988888888989999999999999999


Q ss_pred             CC-CChhHHHhhHHHHHHHHHHHHhcCCCCCCCCccccCChhhHHHHHHhcCCccccccccccHHHHhhcCCCCCCC
Q psy4626         213 CS-SLPSFVVSITACTQALALIELFNAPSGRYKSDVYLLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGP  288 (542)
Q Consensus       213 ~~-thp~~vmd~sfa~q~la~~~L~~~~~~~~~~gv~~lp~~~d~~VA~l~L~~lg~~i~~lt~~~a~~lg~~e~~p  288 (542)
                      +. |||+++||++|++|+++..+++.++ +++.++|+.+|+++|++||++||++||++||+||++|.+||++|+.+|
T Consensus       338 ~~~gH~~~vmd~sf~~q~l~a~~l~~~~-~~~~~kV~~~p~~~d~~vA~~~l~~~g~~~~~lt~~q~~y~~~~~~g~  413 (413)
T cd00401         338 CATGHPSFVMSNSFTNQVLAQIELWTNR-DKYEVGVYFLPKKLDEEVARLHLGKLGVKLTKLTDKQAEYLGVPVEGP  413 (413)
T ss_pred             ccCCCccceechhHHHHHHHHHHHHhcC-CcCCCcEEECCHHHHHHHHHHHHHhcCceeccCCHHHHHHhcCCcCCC
Confidence            87 7999999999999999999999987 678899999999999999999999999999999999999999998775

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]

Probab=100.00  E-value=3.8e-56  Score=452.50  Aligned_cols=299  Identities=30%  Similarity=0.460  Sum_probs=226.9

Q ss_pred             cCcEEEEEcCChhH--HHHHHHHHhC-CCEEEEEeCCchhhhhhhcCCceeeCHHHHh-cCCcEEEEcCCCccc-C---C
Q psy4626          76 GGKQVVLCGYGEVG--KGCCQSLKGL-GCVIYITEIDPICALQACMDGFSVVKLNEVI-RTVDIVVTATGNKNV-V---T  147 (542)
Q Consensus        76 ~GktVvViG~G~IG--~~vA~~l~~~-Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l-~~aDvVi~atG~~~l-I---~  147 (542)
                      .|..|...++.|..  ..+|.+++.. |..|+++.-  .      ....+...++.++ ..+|++++..|..-. +   .
T Consensus        68 ~GAeV~~a~cNplSTqD~vaaAl~~~~GipVfA~kG--e------~~eeY~~~~~~vl~~~p~iiiDDG~D~~~~vh~~~  139 (420)
T COG0499          68 GGAEVRWASCNPLSTQDDVAAALAAKEGIPVFAWKG--E------TLEEYYEAIDQVLDWEPNIIIDDGGDLTKLVHLER  139 (420)
T ss_pred             cCceEEEecCCCCcccHHHHHHHhhccCceEEEEcC--C------CHHHHHHHHHHHhCcCCCEEEecCcceeeeeeccc
Confidence            35666666666665  4555555433 666666521  0      0000112233344 468999997663211 1   2


Q ss_pred             HHHHhccCCCeEEEeccCCCcccChHhhcCCCcceeeeccceeeEecCCCCEEEEecCCCcccccCCCChhHHHhhHHHH
Q psy4626         148 REHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIVLLAEGRLVNLSCSSLPSFVVSITACT  227 (542)
Q Consensus       148 ~e~l~~mk~GailvnvG~g~~eid~~aL~~~~l~v~~~~~~v~~y~~~dg~~I~LLa~GrLvnl~~~thp~~vmd~sfa~  227 (542)
                      .+.++.++.+.....+|       +.+|+                        .+..+|.|..      |...++.|..+
T Consensus       140 ~~l~~~i~G~tEETTTG-------V~RL~------------------------am~~~G~L~f------Pai~VNDs~tK  182 (420)
T COG0499         140 PELLDAIKGGTEETTTG-------VHRLR------------------------AMEKDGVLKF------PAINVNDSVTK  182 (420)
T ss_pred             HHHHHHhcCCCcccchH-------HHHHH------------------------HHHhcCCccc------ceEeecchhhh
Confidence            45566777777777777       45554                        2444555555      66666777777


Q ss_pred             HHHHHHHHhcCCCCCCCCccccCChhhHHHHHHhcC----Cc---ccc-ccccccHHHHhhcCC----CCCCCCCCCccc
Q psy4626         228 QALALIELFNAPSGRYKSDVYLLPKKMDEYVASLHL----PT---FDA-HLTELSDEQAKYMGL----NKAGPFKPSYYS  295 (542)
Q Consensus       228 q~la~~~L~~~~~~~~~~gv~~lp~~~d~~VA~l~L----~~---lg~-~i~~lt~~~a~~lg~----~e~~p~~a~ea~  295 (542)
                            ++|+   ++|..+-..    +|--.....+    +.   .|- -.++=.+.+++++|+    +|+||+||+||+
T Consensus       183 ------~~FD---NrYGtgqS~----~DgI~RaTn~liaGK~vVV~GYG~vGrG~A~~~rg~GA~ViVtEvDPI~AleA~  249 (420)
T COG0499         183 ------SLFD---NRYGTGQSL----LDGILRATNVLLAGKNVVVAGYGWVGRGIAMRLRGMGARVIVTEVDPIRALEAA  249 (420)
T ss_pred             ------cccc---cccccchhH----HHHHHhhhceeecCceEEEecccccchHHHHHhhcCCCeEEEEecCchHHHHHh
Confidence                  7777   467775322    2211111111    11   111 445556999999999    699999999999


Q ss_pred             cCCeeeeehhhhcccCcEEEEccCCCCccCHhHHhcCCCCcEEEccCCCCcccccccccCCCcceecccCCeeEEEcCCC
Q psy4626         296 MDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDG  375 (542)
Q Consensus       296 mdG~~v~~~~~a~~~~d~~~t~tg~~~vi~~~~~~~mk~gail~n~gh~~~Ei~~~~l~~~~~~~~~~~~~v~~~~~~~g  375 (542)
                      ||||+||+|+||++.+|||||+|||++||+.|||..|||||||||+||||+|||+++|+++++++.++||+|++|++|||
T Consensus       250 MdGf~V~~m~~Aa~~gDifiT~TGnkdVi~~eh~~~MkDgaIl~N~GHFd~EI~~~~L~~~~~~~~~vr~~V~ey~l~~G  329 (420)
T COG0499         250 MDGFRVMTMEEAAKTGDIFVTATGNKDVIRKEHFEKMKDGAILANAGHFDVEIDVAGLEELAVEKREVRPQVDEYELPDG  329 (420)
T ss_pred             hcCcEEEEhHHhhhcCCEEEEccCCcCccCHHHHHhccCCeEEecccccceeccHHHHHHhhhhHhccccCceEEEcCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CEEEEeecCceecccCCC-CChhhhhhhhhhh--------cccCCCcchhhHH---HHHHHHHHHhhcc
Q psy4626         376 KRIVLLAEGRLVNLSCSS-LPSFVVSITACTQ--------RDKSSLIPCYHLR---FASNLAKYLLNSL  432 (542)
Q Consensus       376 ~~~~ll~~GrlvNl~~~~-~p~~~~~~~~~~~--------~~~~~l~~~~~~~---~~~~va~~~l~~~  432 (542)
                      |++|||+|||||||+||+ ||+||||+||++|        ++++.++|+||.+   +|++|||++|.+|
T Consensus       330 kri~llaeGRLvNLa~a~GHPs~VMd~SFanQaLa~~~L~~n~~~~~~~Vy~lP~~lD~~VArl~L~~~  398 (420)
T COG0499         330 KRIILLAEGRLVNLAAATGHPSEVMDMSFANQALAQIYLVKNHGKLEPGVYRLPKELDEEVARLKLEAM  398 (420)
T ss_pred             CEEEEEecceeeeeccCCCCcHHHhhhhHHHHHHHHHHHHhcccccCCceeeCcHHHHHHHHHHHHHHh
Confidence            999999999999999998 9999999999994        7788999999999   9999999999987

>KOG1370|consensus

Probab=100.00  E-value=1.5e-47  Score=381.37  Aligned_cols=105  Identities=70%  Similarity=1.359  Sum_probs=103.3

Q ss_pred             CCCcEEeecCCCHHHHHHHHHHHh--hcCCCceeecCCCchhhhhhhhccccccccceeccchhhHHHHHHHHHHcCCcc
Q psy4626         437 TGLPVFAWRGETEEDFWWCIDKCV--NSWQPNMILDDGGDATHWMLKKYPTMFKAIKGIVEESLTGVHRLYQLSKAGKLT  514 (542)
Q Consensus       437 ~g~~v~a~~g~~~~ey~~~~~~~~--~~~~p~~i~ddg~d~~~~~h~~~~~~~~~~~g~~eetttgv~~l~~~~~~g~l~  514 (542)
                      .|+|||||||||+|||||||++++  ++|+||||+|||||+|+++|+|||+++++|+|+||||||||||||+|.++|+|+
T Consensus        96 ~g~Pvfawkget~ee~~wcie~~~~~~g~~~nmIlDdggd~t~l~h~kyp~~~~~i~GiseEttTGVH~Lykm~k~G~L~  175 (434)
T KOG1370|consen   96 AGVPVFAWKGETEEEYWWCIERCLNKDGWQPNMILDDGGDLTHLVHEKYPQMFKKIRGISEETTTGVHNLYKMSKNGKLK  175 (434)
T ss_pred             cCCceeeeccccchhhhhhhhhhhccCCCCcceeecCCCchhhhhhhhhHHHHhhhcccchhhhhhHHHHHHHHhCCcee
Confidence            899999999999999999999998  478999999999999999999999999999999999999999999999999999


Q ss_pred             cceeeeccccccccccccCCCCcccCC
Q psy4626         515 VPAMNVNDSVTKTKFDNLYMCRESIID  541 (542)
Q Consensus       515 ~p~i~vnd~~~k~~fdn~yg~~~s~~d  541 (542)
                      +|+||||||+|||||||+||||||++|
T Consensus       176 VPAiNVNDSVTKsKFDnLygcreSl~D  202 (434)
T KOG1370|consen  176 VPAINVNDSVTKSKFDNLYGCRESLLD  202 (434)
T ss_pred             cceeeccchhhhhhccccccchhhhhh
Confidence            999999999999999999999999998

>PLN02494 adenosylhomocysteinase

Probab=100.00  E-value=2.7e-40  Score=353.52  Aligned_cols=365  Identities=25%  Similarity=0.402  Sum_probs=264.4

Q ss_pred             CccHHHHHHHhCCCCCCCCceeeceecccHHhhhcccccceeecCchhhhHHHHhHHHHHHHHHHHHHhhcCccccCcEE
Q psy4626           1 MPGIMALRKRAGDDKPLKNARIVGCTHINAQTAAGKLTVPAMNVNDSVTKTKFDNLYMCRESIIDSLKRSTDVMFGGKQV   80 (542)
Q Consensus         1 MP~l~~l~~~~~~~~pl~G~~i~~~lh~~~~tA~~~L~~PV~~vn~s~~K~~fd~~~g~~~s~~~ai~r~~~~~l~GktV   80 (542)
                      ||+|++|+++|..+|||+|.||++|+|+|+|||.                        ..+    .+      .-.|..|
T Consensus        28 mp~l~~~~~~~~~~~pl~G~~i~~~lHl~~kTa~------------------------L~~----tL------~~~GA~v   73 (477)
T PLN02494         28 MPGLMACRTEFGPSQPFKGARITGSLHMTIQTAV------------------------LIE----TL------TALGAEV   73 (477)
T ss_pred             CHHHHHHHHHhhccCCCCCCEEEEEEechHHHHH------------------------HHH----HH------HHcCCEE
Confidence            9999999999999999999999999999999998                        111    11      2359999


Q ss_pred             EEEcCChhH--HHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHHHHh-----cCCcEEEEcCCCcc-cCCHH-HH
Q psy4626          81 VLCGYGEVG--KGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVI-----RTVDIVVTATGNKN-VVTRE-HM  151 (542)
Q Consensus        81 vViG~G~IG--~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l-----~~aDvVi~atG~~~-lI~~e-~l  151 (542)
                      .+.|++|..  ..+|.+|+..|+.|++|.--.  ..+      +...++.++     .++|++++..|.-- ++... .+
T Consensus        74 ~~~~~Np~sTqd~vaaal~~~gi~vfa~~g~~--~~e------y~~~~~~~l~~~~~~~p~~i~DDG~dl~~~~h~~~~~  145 (477)
T PLN02494         74 RWCSCNIFSTQDHAAAAIARDSAAVFAWKGET--LQE------YWWCTERALDWGPGGGPDLIVDDGGDATLLIHEGVKA  145 (477)
T ss_pred             EEEcCCCccchHHHHHHHHhCCceEEEecCCC--HHH------HHHHHHHHHcCCCCCCCCEEEeCCchHHHHHHhchhh
Confidence            999999987  789999999999999984211  110      112233343     24899999766411 11100 01


Q ss_pred             hc-cCCCeEEEeccCCCc-c--cChHhhcC----CC-----c--ceee----eccceeeEecCCCCEEEEecCCCccccc
Q psy4626         152 DK-MKNGCVVCNMGHSNT-E--IDVNSLRT----PD-----L--TWEK----VRSQVDHVIWPDGKRIVLLAEGRLVNLS  212 (542)
Q Consensus       152 ~~-mk~GailvnvG~g~~-e--id~~aL~~----~~-----l--~v~~----~~~~v~~y~~~dg~~I~LLa~GrLvnl~  212 (542)
                      +. -+..+.+-+....+. +  ..+..|..    ..     +  .+.+    .+.++.++.       .+-.+|.|..  
T Consensus       146 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~EeTttGv~Rl~-------~m~~~g~L~~--  216 (477)
T PLN02494        146 EEEFEKDGTLPDPTSTDNAEFKIVLTIIKDGLKVDPKKYHKMKERLVGVSEETTTGVKRLY-------QMQKNGTLLF--  216 (477)
T ss_pred             hhcccccccCCCCCCcccHHHHHHHHHHHHHHhhCcchhhHHHHhhcCCcccccHHHHHHH-------HHHHCCCCCC--
Confidence            11 001122212111110 0  00111110    00     0  0000    111112211       2334566655  


Q ss_pred             CCCChhHHHhhHHHHHHHHHHHHhcCCCCCCCCccccCChhhHHHHHH----hcCCcccc----ccccccHHHHhhcCC-
Q psy4626         213 CSSLPSFVVSITACTQALALIELFNAPSGRYKSDVYLLPKKMDEYVAS----LHLPTFDA----HLTELSDEQAKYMGL-  283 (542)
Q Consensus       213 ~~thp~~vmd~sfa~q~la~~~L~~~~~~~~~~gv~~lp~~~d~~VA~----l~L~~lg~----~i~~lt~~~a~~lg~-  283 (542)
                          |+..++.+..+      ++|+   +.|..+-..    +|--...    +..++.++    .|++..+.+++++|+ 
T Consensus       217 ----Pvi~vnds~~K------~~fD---n~yGtgqS~----~d~i~r~t~i~LaGKtVvViGyG~IGr~vA~~aka~Ga~  279 (477)
T PLN02494        217 ----PAINVNDSVTK------SKFD---NLYGCRHSL----PDGLMRATDVMIAGKVAVICGYGDVGKGCAAAMKAAGAR  279 (477)
T ss_pred             ----CEEEEcChhhh------hhhh---ccccccccH----HHHHHHhcCCccCCCEEEEECCCHHHHHHHHHHHHCCCE
Confidence                77777888877      4555   345544222    2222222    23355554    899999999999999 


Q ss_pred             ---CCCCCCCCCccccCCeeeeehhhhcccCcEEEEccCCCCccCHhHHhcCCCCcEEEccCCCCcccccccccCCC-cc
Q psy4626         284 ---NKAGPFKPSYYSMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPD-LT  359 (542)
Q Consensus       284 ---~e~~p~~a~ea~mdG~~v~~~~~a~~~~d~~~t~tg~~~vi~~~~~~~mk~gail~n~gh~~~Ei~~~~l~~~~-~~  359 (542)
                         ++.||.++.+|.|+||.+++++++++.+||||++||++++|+.++|+.||+|++|+|+|||+.|||.++|.+.+ .+
T Consensus       280 VIV~e~dp~r~~eA~~~G~~vv~leEal~~ADVVI~tTGt~~vI~~e~L~~MK~GAiLiNvGr~~~eID~~aL~~~~~l~  359 (477)
T PLN02494        280 VIVTEIDPICALQALMEGYQVLTLEDVVSEADIFVTTTGNKDIIMVDHMRKMKNNAIVCNIGHFDNEIDMLGLETYPGVK  359 (477)
T ss_pred             EEEEeCCchhhHHHHhcCCeeccHHHHHhhCCEEEECCCCccchHHHHHhcCCCCCEEEEcCCCCCccCHHHHhhccccc
Confidence               47799999999999999999999999999999999999999999999999999999999999999999999975 88


Q ss_pred             eecccCCeeEEEcCC-CCEEEEeecCceecccCCC-CChhhhhhhhhhh--------cc--cCCCcchhhHH---HHHHH
Q psy4626         360 WEKVRSQVDHVIWPD-GKRIVLLAEGRLVNLSCSS-LPSFVVSITACTQ--------RD--KSSLIPCYHLR---FASNL  424 (542)
Q Consensus       360 ~~~~~~~v~~~~~~~-g~~~~ll~~GrlvNl~~~~-~p~~~~~~~~~~~--------~~--~~~l~~~~~~~---~~~~v  424 (542)
                      +.+++|+|+.|.++| ||+||||+|||||||+||+ ||+||||++|++|        ++  ++.|+|+||+|   +|++|
T Consensus       360 ~~~i~~~vd~y~~~d~g~~i~ll~eGrlvNl~~~~GhP~evmd~sFa~Q~la~~~l~~~~~~~~~~~~v~~lP~~~D~~v  439 (477)
T PLN02494        360 RITIKPQTDRWVFPDTGSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWNEKKSGKYEKKVYVLPKHLDEKV  439 (477)
T ss_pred             eeccCCCceEEEcCCCCCEEEEEeCCccccccCCCCCCcceeeHHHHHHHHHHHHHHhcccccccCCCcEECCHHHHHHH
Confidence            999999999999999 9999999999999999998 9999999999995        33  57899999999   99999


Q ss_pred             HHHHhhccC
Q psy4626         425 AKYLLNSLT  433 (542)
Q Consensus       425 a~~~l~~~~  433 (542)
                      |++||++|-
T Consensus       440 A~~~L~~~g  448 (477)
T PLN02494        440 AALHLGKLG  448 (477)
T ss_pred             HHHHHHHcC
Confidence            999999984

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=100.00  E-value=3e-40  Score=352.29  Aligned_cols=165  Identities=38%  Similarity=0.625  Sum_probs=158.5

Q ss_pred             ccccccHHHHhhcCC----CCCCCCCCCccccCCeeeeehhhhcccCcEEEEccCCCCccCHhHHhcCCCCcEEEccCCC
Q psy4626         269 HLTELSDEQAKYMGL----NKAGPFKPSYYSMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHS  344 (542)
Q Consensus       269 ~i~~lt~~~a~~lg~----~e~~p~~a~ea~mdG~~v~~~~~a~~~~d~~~t~tg~~~vi~~~~~~~mk~gail~n~gh~  344 (542)
                      .+++....+++++|+    ++.||.|+.+|.++||++++++++++.+|+||++||++++|+.++|..||+|++++|+|||
T Consensus       222 ~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~~G~~v~~l~eal~~aDVVI~aTG~~~vI~~~~~~~mK~GailiNvG~~  301 (425)
T PRK05476        222 DVGKGCAQRLRGLGARVIVTEVDPICALQAAMDGFRVMTMEEAAELGDIFVTATGNKDVITAEHMEAMKDGAILANIGHF  301 (425)
T ss_pred             HHHHHHHHHHHhCCCEEEEEcCCchhhHHHHhcCCEecCHHHHHhCCCEEEECCCCHHHHHHHHHhcCCCCCEEEEcCCC
Confidence            889999999999999    4788999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcccccccccCCCcceecccCCeeEEEcCCCCEEEEeecCceecccCCC-CChhhhhhhhhhh--------cccCCCcch
Q psy4626         345 NTEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIVLLAEGRLVNLSCSS-LPSFVVSITACTQ--------RDKSSLIPC  415 (542)
Q Consensus       345 ~~Ei~~~~l~~~~~~~~~~~~~v~~~~~~~g~~~~ll~~GrlvNl~~~~-~p~~~~~~~~~~~--------~~~~~l~~~  415 (542)
                      +.|||+++|++.+.+++++||+|++|++||||++|||+|||+|||+||+ ||+|+||++|++|        ++++.|+||
T Consensus       302 d~Eid~~~L~~~~~~~~~v~~~v~~y~~~~g~~i~lLa~GrlvNl~~~~ghp~~vmd~sfa~q~l~~~~l~~~~~~~~~~  381 (425)
T PRK05476        302 DNEIDVAALEELAVKWREIKPQVDEYTLPDGKRIILLAEGRLVNLGAATGHPSEVMDMSFANQALAQIELFTNRGKLEPG  381 (425)
T ss_pred             CCccChHHHhhcCcceeecCCCceEEEeCCCCEEEEEeCCcccccCCCCCCcceeeCHHHHHHHHHHHHHHhccCcCCCC
Confidence            9999999999999999999999999999999999999999999999998 9999999999994        567899999


Q ss_pred             hhHH---HHHHHHHHHhhccC
Q psy4626         416 YHLR---FASNLAKYLLNSLT  433 (542)
Q Consensus       416 ~~~~---~~~~va~~~l~~~~  433 (542)
                      ||++   +|++||++||++|-
T Consensus       382 v~~lp~~~d~~vA~~~l~~~g  402 (425)
T PRK05476        382 VYVLPKELDEEVARLKLKALG  402 (425)
T ss_pred             eEECCHHHHHHHHHHHHHHcC
Confidence            9999   99999999999984

>TIGR00936 ahcY adenosylhomocysteinase

Probab=100.00  E-value=2.6e-40  Score=350.97  Aligned_cols=299  Identities=29%  Similarity=0.432  Sum_probs=221.7

Q ss_pred             cCcEEEEEcCChhH--HHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHHHHh-cCCcEEEEcCCCcc-cC---CH
Q psy4626          76 GGKQVVLCGYGEVG--KGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVI-RTVDIVVTATGNKN-VV---TR  148 (542)
Q Consensus        76 ~GktVvViG~G~IG--~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l-~~aDvVi~atG~~~-lI---~~  148 (542)
                      .|..|.+.|++|..  ..+|.+|+..|.+|+.+.- ... .+      +...++.++ .++|+++++.|.-. ++   .+
T Consensus        55 ~GA~v~~~~~np~stqd~vaaaL~~~gi~v~a~~~-~~~-~e------y~~~~~~~l~~~p~~iiDdGgdl~~~~~~~~~  126 (406)
T TIGR00936        55 GGAEVAWTSCNPLSTQDDVAAALAKAGIPVFAWRG-ETN-EE------YYWAIEQVLDHEPNIIIDDGADLIFLLHTERP  126 (406)
T ss_pred             cCCEEEEEccCCccccHHHHHHHHhCCceEEEecC-CCH-HH------HHHHHHHHhcCCCCEEEecccHHHHHHHHhhh
Confidence            35666666666544  4566666666666666521 000 00      011233444 57899999877411 11   12


Q ss_pred             HHHhccCCCeEEEeccCCCcccChHhhcCCCcceeeeccceeeEecCCCCEEEEecCCCcccccCCCChhHHHhhHHHHH
Q psy4626         149 EHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIVLLAEGRLVNLSCSSLPSFVVSITACTQ  228 (542)
Q Consensus       149 e~l~~mk~GailvnvG~g~~eid~~aL~~~~l~v~~~~~~v~~y~~~dg~~I~LLa~GrLvnl~~~thp~~vmd~sfa~q  228 (542)
                      +.+..+..++....+|       +.+++                        .+..+|.|..      |+..++.+.++ 
T Consensus       127 ~~~~~~~G~~EeTttG-------v~rl~------------------------~~~~~~~L~~------Pvi~vnds~~K-  168 (406)
T TIGR00936       127 ELLEKIIGGSEETTTG-------VIRLR------------------------AMEAEGVLKF------PAINVNDAYTK-  168 (406)
T ss_pred             hhhhccEEEeecchHH-------HHHHH------------------------HHHHcCCCCC------cEEEecchhhc-
Confidence            3344455555555555       33332                        1333344444      66666777766 


Q ss_pred             HHHHHHHhcCCCCCCCCccccCChhhHHHHHH-----hcCCcccc----ccccccHHHHhhcCC----CCCCCCCCCccc
Q psy4626         229 ALALIELFNAPSGRYKSDVYLLPKKMDEYVAS-----LHLPTFDA----HLTELSDEQAKYMGL----NKAGPFKPSYYS  295 (542)
Q Consensus       229 ~la~~~L~~~~~~~~~~gv~~lp~~~d~~VA~-----l~L~~lg~----~i~~lt~~~a~~lg~----~e~~p~~a~ea~  295 (542)
                           ++|+   ++|..+...+    |. +.+     +..++.++    .++.....+++++|+    ++.||.|+.+|.
T Consensus       169 -----~~fD---n~yg~g~s~~----~~-i~r~t~~~l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~  235 (406)
T TIGR00936       169 -----SLFD---NRYGTGQSTI----DG-ILRATNLLIAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAA  235 (406)
T ss_pred             -----hhhh---cccccchhHH----HH-HHHhcCCCCCcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHH
Confidence                 4555   3465553321    21 221     22344444    889999999999999    477999999999


Q ss_pred             cCCeeeeehhhhcccCcEEEEccCCCCccCHhHHhcCCCCcEEEccCCCCcccccccccCCCcceecccCCeeEEEcCCC
Q psy4626         296 MDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDG  375 (542)
Q Consensus       296 mdG~~v~~~~~a~~~~d~~~t~tg~~~vi~~~~~~~mk~gail~n~gh~~~Ei~~~~l~~~~~~~~~~~~~v~~~~~~~g  375 (542)
                      |+||++++++|+++.+||||++||++++|+.++|..||+|++++|+|||++|||.++|.+.+.+++++|++|++|.+|||
T Consensus       236 ~~G~~v~~leeal~~aDVVItaTG~~~vI~~~~~~~mK~GailiN~G~~~~eId~~aL~~~~~~~~~~~~~v~~~~~~~g  315 (406)
T TIGR00936       236 MDGFRVMTMEEAAKIGDIFITATGNKDVIRGEHFENMKDGAIVANIGHFDVEIDVKALEELAVEKRNVRPQVDEYILKDG  315 (406)
T ss_pred             hcCCEeCCHHHHHhcCCEEEECCCCHHHHHHHHHhcCCCCcEEEEECCCCceeCHHHHHHHHhhccccccceEEEEeCCC
Confidence            99999999999999999999999999999999999999999999999999999999999988899999999999999999


Q ss_pred             CEEEEeecCceecccCCC-CChhhhhhhhhhh--------cccCCCcchhhHH---HHHHHHHHHhhccC
Q psy4626         376 KRIVLLAEGRLVNLSCSS-LPSFVVSITACTQ--------RDKSSLIPCYHLR---FASNLAKYLLNSLT  433 (542)
Q Consensus       376 ~~~~ll~~GrlvNl~~~~-~p~~~~~~~~~~~--------~~~~~l~~~~~~~---~~~~va~~~l~~~~  433 (542)
                      |+||||+|||+|||+||+ ||+|+||++|++|        +++++|+||||++   +|++||++||++|-
T Consensus       316 ~~i~ll~~GrlvNl~~~~ghp~~vmd~sfa~q~la~~~l~~~~~~~~~~v~~lp~~~d~~va~~~l~~~g  385 (406)
T TIGR00936       316 RRIYLLAEGRLVNLAAAEGHPSEVMDMSFANQALAAEYLWKNHDKLEPGVYRLPKELDEMVARLKLEAMG  385 (406)
T ss_pred             CEEEEEeCCceecccCCCCCcceeeCHHHHHHHHHHHHHHhcccccCCCeEECCHHHHHHHHHHHHHHcC
Confidence            999999999999999998 9999999999994        5667899999999   99999999999984

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=100.00  E-value=4.4e-39  Score=344.98  Aligned_cols=364  Identities=29%  Similarity=0.428  Sum_probs=254.4

Q ss_pred             CccHHHHHHHhCCCCCCCCceeeceecccHHhhhcccccceeecCchhhhHHHHhHHHHHHHHHHHHHhhcCccccCcEE
Q psy4626           1 MPGIMALRKRAGDDKPLKNARIVGCTHINAQTAAGKLTVPAMNVNDSVTKTKFDNLYMCRESIIDSLKRSTDVMFGGKQV   80 (542)
Q Consensus         1 MP~l~~l~~~~~~~~pl~G~~i~~~lh~~~~tA~~~L~~PV~~vn~s~~K~~fd~~~g~~~s~~~ai~r~~~~~l~GktV   80 (542)
                      ||+|++++++|..+|||+|.||++|+|+|+|||.                        .-+    .+      .-.|..|
T Consensus        27 mP~L~~~~~~~~~~~pl~G~ri~~~lh~~~~Ta~------------------------l~~----tL------~~~GA~v   72 (476)
T PTZ00075         27 MPGLMALREEYGPSKPLKGARITGCLHMTVQTAV------------------------LIE----TL------KALGAEV   72 (476)
T ss_pred             CHHHHHHHHHHhccCCCCCCEEEEEEcchHHHHH------------------------HHH----HH------HHcCCEE
Confidence            9999999999999999999999999999999997                        011    21      1248999


Q ss_pred             EEEcCChhH--HHHHHHHHhCC-CEEEEEeCCchhhhhhhcCCceeeCHHHHhc-----CCcEEEEcCCCccc-CC-HHH
Q psy4626          81 VLCGYGEVG--KGCCQSLKGLG-CVIYITEIDPICALQACMDGFSVVKLNEVIR-----TVDIVVTATGNKNV-VT-REH  150 (542)
Q Consensus        81 vViG~G~IG--~~vA~~l~~~G-a~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~-----~aDvVi~atG~~~l-I~-~e~  150 (542)
                      .+.|+++..  ..+|.+++..| +.|+++.--.  ..+      +...++.++.     ++|+++++.|.--. +. ...
T Consensus        73 ~~~~~n~~stqD~~aaal~~~g~i~vfa~~g~t--~ee------y~~~~~~~l~~~~~~~p~~i~DdG~dl~~~~~~g~~  144 (476)
T PTZ00075         73 RWCSCNIFSTQDHAAAAIAKAGSVPVFAWKGET--LEE------YWWCTEQALKWPNGDGPNLIVDDGGDATLLVHEGVK  144 (476)
T ss_pred             EEEcCCCCccccHHHHHHHhcCCeEEEEecCCC--HHH------HHHHHHHHHhccCCCCCCEEEECCcHHHHHHHhhhH
Confidence            999999976  67888888888 9999984211  010      1122344442     69999998774211 11 011


Q ss_pred             Hhcc--CCCeEEEeccCCCc-c--cChHhhcCCCc------------ceee----eccceeeEecCCCCEEEEecCCCcc
Q psy4626         151 MDKM--KNGCVVCNMGHSNT-E--IDVNSLRTPDL------------TWEK----VRSQVDHVIWPDGKRIVLLAEGRLV  209 (542)
Q Consensus       151 l~~m--k~GailvnvG~g~~-e--id~~aL~~~~l------------~v~~----~~~~v~~y~~~dg~~I~LLa~GrLv  209 (542)
                      ++..  +.|.+ -.....+. +  .-+..|+. .+            .+.+    .+.++.++.       .+..+|.|.
T Consensus       145 ~e~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~G~~EeTttGv~rl~-------~m~~~g~L~  215 (476)
T PTZ00075        145 AEKLYEEKGIL-PDPLDPSNEDEKCLLTVLKK-LLTKNPDKWTNLVKKIVGVSEETTTGVHRLY-------KMLKKGELL  215 (476)
T ss_pred             hhhcccccccc-CCCcccccHHHHHHHHHHhh-hhhcCchhhhhhhhccEeeeecchHHHHHHH-------HHHHCCCCC
Confidence            2222  11211 12222111 1  11111110 00            0011    111112211       122334432


Q ss_pred             cccCC--C-ChhHHHhhHHHHHHHHHHHHhcCCCCCCCCccccCChhhHHHHHHhcCCcccc----ccccccHHHHhhcC
Q psy4626         210 NLSCS--S-LPSFVVSITACTQALALIELFNAPSGRYKSDVYLLPKKMDEYVASLHLPTFDA----HLTELSDEQAKYMG  282 (542)
Q Consensus       210 nl~~~--t-hp~~vmd~sfa~q~la~~~L~~~~~~~~~~gv~~lp~~~d~~VA~l~L~~lg~----~i~~lt~~~a~~lg  282 (542)
                      .-...  . ..-.+.|..++.-.-....+++..      ++            .+..+++++    .|++..+++++++|
T Consensus       216 iPV~nv~d~~tk~~aD~~~G~~~s~~d~~~R~~------~~------------~LaGKtVgVIG~G~IGr~vA~rL~a~G  277 (476)
T PTZ00075        216 FPAINVNDSVTKSKFDNIYGCRHSLIDGIFRAT------DV------------MIAGKTVVVCGYGDVGKGCAQALRGFG  277 (476)
T ss_pred             ceEEEeCCcchHHHHHHHHHHHHHHHHHHHHhc------CC------------CcCCCEEEEECCCHHHHHHHHHHHHCC
Confidence            21111  1 222233333332111112233321      00            234455555    89999999999999


Q ss_pred             C----CCCCCCCCCccccCCeeeeehhhhcccCcEEEEccCCCCccCHhHHhcCCCCcEEEccCCCCcccccccccCCC-
Q psy4626         283 L----NKAGPFKPSYYSMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPD-  357 (542)
Q Consensus       283 ~----~e~~p~~a~ea~mdG~~v~~~~~a~~~~d~~~t~tg~~~vi~~~~~~~mk~gail~n~gh~~~Ei~~~~l~~~~-  357 (542)
                      +    ++.||.++++|.|+||++++++++++.+||||++||++++|+.++|++||+|++|+|+|||+.||++++|+..+ 
T Consensus       278 a~ViV~e~dp~~a~~A~~~G~~~~~leell~~ADIVI~atGt~~iI~~e~~~~MKpGAiLINvGr~d~Ei~i~aL~~~~~  357 (476)
T PTZ00075        278 ARVVVTEIDPICALQAAMEGYQVVTLEDVVETADIFVTATGNKDIITLEHMRRMKNNAIVGNIGHFDNEIQVAELEAYPG  357 (476)
T ss_pred             CEEEEEeCCchhHHHHHhcCceeccHHHHHhcCCEEEECCCcccccCHHHHhccCCCcEEEEcCCCchHHhHHHHHhcCC
Confidence            9    46689999999999999999999999999999999999999999999999999999999999999999998865 


Q ss_pred             cceecccCCeeEEEcCCCCEEEEeecCceecccCCC-CChhhhhhhhhhh--------cccC--CCcchhhHH---HHHH
Q psy4626         358 LTWEKVRSQVDHVIWPDGKRIVLLAEGRLVNLSCSS-LPSFVVSITACTQ--------RDKS--SLIPCYHLR---FASN  423 (542)
Q Consensus       358 ~~~~~~~~~v~~~~~~~g~~~~ll~~GrlvNl~~~~-~p~~~~~~~~~~~--------~~~~--~l~~~~~~~---~~~~  423 (542)
                      .++.+++|++++|++||||+||||+|||||||+||+ ||+||||++|++|        +++.  +|+|+||.|   +|++
T Consensus       358 vdv~evep~v~~~~~~~g~~i~llaeGrlvNl~~~~GhP~~vMd~sfa~Q~la~~~l~~~~~~~~~~~~v~~lp~~~d~~  437 (476)
T PTZ00075        358 IEIVEIKPQVDRYTFPDGKGIILLAEGRLVNLGCATGHPSFVMSNSFTNQVLAQIELWENRDTGKYPNGVYKLPKELDEK  437 (476)
T ss_pred             ceeecccCCCCeEEeCCCCEEEEEeCCCccccCCCCCCCeeEeeHHHHHHHHHHHHHHhccCccccCCceEECCHHHHHH
Confidence            888999999999999999999999999999999998 9999999999994        5555  799999999   9999


Q ss_pred             HHHHHhhccC
Q psy4626         424 LAKYLLNSLT  433 (542)
Q Consensus       424 va~~~l~~~~  433 (542)
                      ||++||++|-
T Consensus       438 vA~~~L~~~g  447 (476)
T PTZ00075        438 VARLHLKKLG  447 (476)
T ss_pred             HHHHHHHHcC
Confidence            9999999984

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=100.00  E-value=8.8e-37  Score=285.38  Aligned_cols=160  Identities=53%  Similarity=0.884  Sum_probs=143.7

Q ss_pred             hHHHHHHHHHHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCCc
Q psy4626          55 NLYMCRESIIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVD  134 (542)
Q Consensus        55 ~~~g~~~s~~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~aD  134 (542)
                      |+|||+||++++++|+++..+.||+++|+|||+||+++|+.|+++|++|+|+|+||.++.+|.++||++.+++++++.+|
T Consensus         1 N~yG~g~S~~d~i~r~t~~~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi~alqA~~dGf~v~~~~~a~~~ad   80 (162)
T PF00670_consen    1 NRYGTGQSLVDGIMRATNLMLAGKRVVVIGYGKVGKGIARALRGLGARVTVTEIDPIRALQAAMDGFEVMTLEEALRDAD   80 (162)
T ss_dssp             HHHHHHHHHHHHHHHHH-S--TTSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT-EEE-HHHHTTT-S
T ss_pred             CccccchhHHHHHHhcCceeeCCCEEEEeCCCcccHHHHHHHhhCCCEEEEEECChHHHHHhhhcCcEecCHHHHHhhCC
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEcCCCcccCCHHHHhccCCCeEEEeccCCCcccChHhhcCCCcceeeeccceeeEecCCCCEEEEecCCCcccccCC
Q psy4626         135 IVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIVLLAEGRLVNLSCS  214 (542)
Q Consensus       135 vVi~atG~~~lI~~e~l~~mk~GailvnvG~g~~eid~~aL~~~~l~v~~~~~~v~~y~~~dg~~I~LLa~GrLvnl~~~  214 (542)
                      +||++||++++++.++|++||+|++++|+||++.|||+++|....++..++++++++|.+|||+.|+||++||++||+|+
T Consensus        81 i~vtaTG~~~vi~~e~~~~mkdgail~n~Gh~d~Eid~~~L~~~~~~~~~v~~~v~~y~l~~G~~i~lLa~GrlvNL~~a  160 (162)
T PF00670_consen   81 IFVTATGNKDVITGEHFRQMKDGAILANAGHFDVEIDVDALEANAVEREEVRPQVDRYTLPDGRRIILLAEGRLVNLAAA  160 (162)
T ss_dssp             EEEE-SSSSSSB-HHHHHHS-TTEEEEESSSSTTSBTHHHHHTCTSEEEEEETTEEEEEETTSEEEEEEGGGSBHHHHHS
T ss_pred             EEEECCCCccccCHHHHHHhcCCeEEeccCcCceeEeeccccccCcEEEEcCCCeeEEEeCCCCEEEEEECCCEEeecCc
Confidence            99999999999999999999999999999999999999999988888999999999999999999999999999999986

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>PF05221 AdoHcyase: S-adenosyl-L-homocysteine hydrolase; InterPro: IPR000043 Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase, 3

Probab=100.00  E-value=6.6e-38  Score=311.64  Aligned_cols=95  Identities=51%  Similarity=0.990  Sum_probs=82.9

Q ss_pred             CCCCcEEeecCCCHHHHHHHHHHHhh---cCCCceeecCCCchhhhhhhhccccccccceeccchhhHHHHHHHHHHcCC
Q psy4626         436 YTGLPVFAWRGETEEDFWWCIDKCVN---SWQPNMILDDGGDATHWMLKKYPTMFKAIKGIVEESLTGVHRLYQLSKAGK  512 (542)
Q Consensus       436 ~~g~~v~a~~g~~~~ey~~~~~~~~~---~~~p~~i~ddg~d~~~~~h~~~~~~~~~~~g~~eetttgv~~l~~~~~~g~  512 (542)
                      +.|||||||||||+|||||||+++|+   +++||+||||||||++++|++||+++++|+|+||||||||+||++|+++|.
T Consensus        90 ~~Gi~V~A~~get~eey~~~i~~~L~~~~~~~P~~iiDDG~Dl~~~lh~~~~~l~~~i~G~sEETTTGv~rL~am~~~g~  169 (268)
T PF05221_consen   90 EEGIPVFAWKGETDEEYWWCIEKALSWEDDHGPNLIIDDGGDLVNLLHTKRPELLSGIIGGSEETTTGVHRLRAMEKEGK  169 (268)
T ss_dssp             HTTEEEEE-TT--HHHHHHHHHHCHSESTTCE-SEEEESSSHHHHHHHHHHHHHHHT-SEEEE-SHHHHHHHHHHHHTT-
T ss_pred             cCCceEEEeCCCCHHHHHHHHHHHhcCCCCCCcceeecchHHHHHHHHHHHHhhhhheEEecccccccchhhhhhhhhcc
Confidence            47999999999999999999999993   356999999999999999999999999999999999999999999999999


Q ss_pred             cccceeeecccccccccc
Q psy4626         513 LTVPAMNVNDSVTKTKFD  530 (542)
Q Consensus       513 l~~p~i~vnd~~~k~~fd  530 (542)
                      |+||+|+||||+||++||
T Consensus       170 L~~PviavNDa~tK~~FD  187 (268)
T PF05221_consen  170 LKFPVIAVNDAVTKHLFD  187 (268)
T ss_dssp             --SEEEESTTSHHHHTTH
T ss_pred             cCCCeeEecchhhHhhcC
Confidence            999999999999999999

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. This enzyme is ubiquitous, highly conserved, and may play a key role in the regulation of the intracellular concentration of adenosylhomocysteine. AdoHcyase requires NAD+ as a cofactor and contains a central glycine-rich region which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity, 0006730 one-carbon metabolic process; PDB: 3N58_B 3H9U_C 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 1K0U_F 1B3R_A 1XWF_D ....

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=100.00  E-value=9.2e-38  Score=291.97  Aligned_cols=125  Identities=44%  Similarity=0.720  Sum_probs=112.3

Q ss_pred             ccccccHHHHhhcCC----CCCCCCCCCccccCCeeeeehhhhcccCcEEEEccCCCCccCHhHHhcCCCCcEEEccCCC
Q psy4626         269 HLTELSDEQAKYMGL----NKAGPFKPSYYSMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHS  344 (542)
Q Consensus       269 ~i~~lt~~~a~~lg~----~e~~p~~a~ea~mdG~~v~~~~~a~~~~d~~~t~tg~~~vi~~~~~~~mk~gail~n~gh~  344 (542)
                      .+++=.+.+++++|+    +|+||+|++||+||||+|++++||++++|||||+||+++||+.+||++|||||||||+|||
T Consensus        33 ~vG~g~A~~lr~~Ga~V~V~e~DPi~alqA~~dGf~v~~~~~a~~~adi~vtaTG~~~vi~~e~~~~mkdgail~n~Gh~  112 (162)
T PF00670_consen   33 KVGKGIARALRGLGARVTVTEIDPIRALQAAMDGFEVMTLEEALRDADIFVTATGNKDVITGEHFRQMKDGAILANAGHF  112 (162)
T ss_dssp             HHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT-EEE-HHHHTTT-SEEEE-SSSSSSB-HHHHHHS-TTEEEEESSSS
T ss_pred             cccHHHHHHHhhCCCEEEEEECChHHHHHhhhcCcEecCHHHHHhhCCEEEECCCCccccCHHHHHHhcCCeEEeccCcC
Confidence            666667899999999    6999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcccccccccCCCcceecccCCeeEEEcCCCCEEEEeecCceecccCCC
Q psy4626         345 NTEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIVLLAEGRLVNLSCSS  393 (542)
Q Consensus       345 ~~Ei~~~~l~~~~~~~~~~~~~v~~~~~~~g~~~~ll~~GrlvNl~~~~  393 (542)
                      |+|||+++|++.+++++++||+|++|++||||+||||+|||||||+||.
T Consensus       113 d~Eid~~~L~~~~~~~~~v~~~v~~y~l~~G~~i~lLa~GrlvNL~~a~  161 (162)
T PF00670_consen  113 DVEIDVDALEANAVEREEVRPQVDRYTLPDGRRIILLAEGRLVNLAAAT  161 (162)
T ss_dssp             TTSBTHHHHHTCTSEEEEEETTEEEEEETTSEEEEEEGGGSBHHHHHS-
T ss_pred             ceeEeeccccccCcEEEEcCCCeeEEEeCCCCEEEEEECCCEEeecCcC
Confidence            9999999999999999999999999999999999999999999999974

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=100.00  E-value=7.7e-37  Score=325.33  Aligned_cols=104  Identities=63%  Similarity=1.194  Sum_probs=102.1

Q ss_pred             CCCcEEeecCCCHHHHHHHHHHHhhcC---CCceeecCCCchhhhhhhhccccccccceeccchhhHHHHHHHHHHcCCc
Q psy4626         437 TGLPVFAWRGETEEDFWWCIDKCVNSW---QPNMILDDGGDATHWMLKKYPTMFKAIKGIVEESLTGVHRLYQLSKAGKL  513 (542)
Q Consensus       437 ~g~~v~a~~g~~~~ey~~~~~~~~~~~---~p~~i~ddg~d~~~~~h~~~~~~~~~~~g~~eetttgv~~l~~~~~~g~l  513 (542)
                      .|||||||||||+||||||++++| +|   +|++|+||||||+.++|++||+++++++|++|||||||+|||+|.++|.|
T Consensus        84 ~gi~v~a~~~~~~~~y~~~~~~~l-~~~~~~p~~i~DdGg~~~~~~~~~~~~~~~~~~G~~EeTttGv~rl~~~~~~~~l  162 (413)
T cd00401          84 AGIPVFAWKGETLEEYWWCIEQAL-KFPDGEPNMILDDGGDLTLLIHKKHPELLPGIRGISEETTTGVHRLYKMEKEGKL  162 (413)
T ss_pred             cCceEEEEcCCCHHHHHHHHHHHH-hccCCCCcEEEecchHHHHHHHhhhhhhhhccEEEeecchHHHHHHHHHHHCCCC
Confidence            599999999999999999999999 58   89999999999999999999999999999999999999999999999999


Q ss_pred             ccceeeeccccccccccccCCCCcccCC
Q psy4626         514 TVPAMNVNDSVTKTKFDNLYMCRESIID  541 (542)
Q Consensus       514 ~~p~i~vnd~~~k~~fdn~yg~~~s~~d  541 (542)
                      +||+|+||||.||++|||+||||||+||
T Consensus       163 ~~Pv~~vnds~~K~~~dn~~g~g~s~~~  190 (413)
T cd00401         163 KFPAINVNDSVTKSKFDNLYGCRESLID  190 (413)
T ss_pred             CCCEEEecchhhcccccccchhchhhHH
Confidence            9999999999999999999999999987

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PF05221 AdoHcyase: S-adenosyl-L-homocysteine hydrolase; InterPro: IPR000043 Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase, 3

Probab=99.97  E-value=6.8e-33  Score=275.84  Aligned_cols=227  Identities=31%  Similarity=0.514  Sum_probs=150.5

Q ss_pred             CccHHHHHHHhCCCCCCCCceeeceecccHHhhhcccccceeecCchhhhHHHHhHHHHHHHHHHHHHhhcCccccCcEE
Q psy4626           1 MPGIMALRKRAGDDKPLKNARIVGCTHINAQTAAGKLTVPAMNVNDSVTKTKFDNLYMCRESIIDSLKRSTDVMFGGKQV   80 (542)
Q Consensus         1 MP~l~~l~~~~~~~~pl~G~~i~~~lh~~~~tA~~~L~~PV~~vn~s~~K~~fd~~~g~~~s~~~ai~r~~~~~l~GktV   80 (542)
                      ||+|++++++|..+|||+|.||++|+|+|+|||.                       ...     .+      ...|..|
T Consensus        25 MPvL~~lr~~~~~~kPl~G~rIa~cLHle~kTA~-----------------------L~~-----tL------~a~GAeV   70 (268)
T PF05221_consen   25 MPVLMALRERFEAEKPLKGARIAGCLHLEAKTAV-----------------------LAE-----TL------KALGAEV   70 (268)
T ss_dssp             -HHHHHHHHHHTTT-TTTTEEEEEES--SHHHHH-----------------------HHH-----HH------HHTTEEE
T ss_pred             CHHHHHHHHHhhccCCCCCCEEEEEEechHHHHH-----------------------HHH-----HH------HHcCCeE
Confidence            9999999999999999999999999999999998                       111     21      2359999


Q ss_pred             EEEcCChhH--HHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHHHHh-----cCCcEEEEcCCCc-ccCC---HH
Q psy4626          81 VLCGYGEVG--KGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVI-----RTVDIVVTATGNK-NVVT---RE  149 (542)
Q Consensus        81 vViG~G~IG--~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l-----~~aDvVi~atG~~-~lI~---~e  149 (542)
                      .+.|++|..  ..+|.+|+..|..|+++.-..  ..      .+.-.++.++     .++|+|++..|.- .++.   .+
T Consensus        71 ~~~~sNplSTQDdvaAAL~~~Gi~V~A~~get--~e------ey~~~i~~~L~~~~~~~P~~iiDDG~Dl~~~lh~~~~~  142 (268)
T PF05221_consen   71 RWTGSNPLSTQDDVAAALAEEGIPVFAWKGET--DE------EYWWCIEKALSWEDDHGPNLIIDDGGDLVNLLHTKRPE  142 (268)
T ss_dssp             EEEESSTTT--HHHHHHHHHTTEEEEE-TT----HH------HHHHHHHHCHSESTTCE-SEEEESSSHHHHHHHHHHHH
T ss_pred             EEecCCCcccchHHHHHhccCCceEEEeCCCC--HH------HHHHHHHHHhcCCCCCCcceeecchHHHHHHHHHHHHh
Confidence            999999987  789999999999999984111  00      0122334444     3689999987642 1121   35


Q ss_pred             HHhccCCCeEEEeccCCCcccChHhhcC----CCcceeeeccceeeEecCCCCEEEEecCCCcccccCCCChhHHHhhHH
Q psy4626         150 HMDKMKNGCVVCNMGHSNTEIDVNSLRT----PDLTWEKVRSQVDHVIWPDGKRIVLLAEGRLVNLSCSSLPSFVVSITA  225 (542)
Q Consensus       150 ~l~~mk~GailvnvG~g~~eid~~aL~~----~~l~v~~~~~~v~~y~~~dg~~I~LLa~GrLvnl~~~thp~~vmd~sf  225 (542)
                      .+..++.++....+|       +.+|+.    +.+..                ++..+++-...++-  .||+||||+||
T Consensus       143 l~~~i~G~sEETTTG-------v~rL~am~~~g~L~~----------------PviavNDa~tK~~F--DHP~eVMd~SF  197 (268)
T PF05221_consen  143 LLSGIIGGSEETTTG-------VHRLRAMEKEGKLKF----------------PVIAVNDAVTKHLF--DHPSEVMDMSF  197 (268)
T ss_dssp             HHHT-SEEEE-SHHH-------HHHHHHHHHTT---S----------------EEEESTTSHHHHTT--HS-HHHHHHHH
T ss_pred             hhhheEEeccccccc-------chhhhhhhhhcccCC----------------CeeEecchhhHhhc--CCchhhhhhHh
Confidence            677888888888888       444441    11110                11112111111111  29999999999


Q ss_pred             HHHHHHHHHHhcCC-CCCCCCccccCChhhHHHHHHhcCCccccccccccHHHHhhcCCCCCCCCCCCcc
Q psy4626         226 CTQALALIELFNAP-SGRYKSDVYLLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYY  294 (542)
Q Consensus       226 a~q~la~~~L~~~~-~~~~~~gv~~lp~~~d~~VA~l~L~~lg~~i~~lt~~~a~~lg~~e~~p~~a~ea  294 (542)
                      ++|+|++++||+++ .++++++||.||+++|++||+++|++||++||+||++|++|||+|..+|||.-.+
T Consensus       198 a~QaLa~~~L~~~~~~~~~~~~V~~lP~~lDe~VA~~kL~~lGi~id~Lt~eQ~~YL~~~~~GP~k~~~y  267 (268)
T PF05221_consen  198 ANQALAQIYLWKNPNSGKLEPGVYPLPKELDEEVARLKLKSLGIKIDKLTEEQAEYLGSWQEGPFKPDHY  267 (268)
T ss_dssp             HHHHHHHHHHHHTGTTGGSTSSEEE--HHHHHHHHHHHHGGGT-------HHHHHHHTS-TTS-SS-TT-
T ss_pred             HHHHHHHHHHHhCcCccccCCCEEECCccchHHHHHHHHHHcCCccccCCHHHHHHcCCCCCCCCCcccc
Confidence            99999999999986 2579999999999999999999999999999999999999999999999997543

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. This enzyme is ubiquitous, highly conserved, and may play a key role in the regulation of the intracellular concentration of adenosylhomocysteine. AdoHcyase requires NAD+ as a cofactor and contains a central glycine-rich region which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity, 0006730 one-carbon metabolic process; PDB: 3N58_B 3H9U_C 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 1K0U_F 1B3R_A 1XWF_D ....

>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]

Probab=99.71  E-value=2.1e-16  Score=164.57  Aligned_cols=206  Identities=17%  Similarity=0.184  Sum_probs=131.4

Q ss_pred             ceecccHHhhhcccccceeecCchhhhHHHHhHHH---------------HHHHHHHHHHhhcCccccCcEEEEEcCChh
Q psy4626          24 GCTHINAQTAAGKLTVPAMNVNDSVTKTKFDNLYM---------------CRESIIDSLKRSTDVMFGGKQVVLCGYGEV   88 (542)
Q Consensus        24 ~~lh~~~~tA~~~L~~PV~~vn~s~~K~~fd~~~g---------------~~~s~~~ai~r~~~~~l~GktVvViG~G~I   88 (542)
                      |+.|++.+.+... ..+|+++..+.+....+...+               ..++.|+. ....+..+.||||+|+|+|.|
T Consensus        76 Gvd~id~~~~~~~-gi~V~nap~~na~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~-~~~~g~el~gkTvGIiG~G~I  153 (324)
T COG0111          76 GVDNIDLEAATKR-GILVVNAPGGNAISVAELVLALLLALARRIPDADASQRRGEWDR-KAFRGTELAGKTVGIIGLGRI  153 (324)
T ss_pred             cccccCHHHHhhc-CCEEEeCCCcchHHHHHHHHHHHHHHhcCchhhHHHHHcCCccc-cccccccccCCEEEEECCCHH
Confidence            4556666555433 678888877643332222211               12223332 112345788999999999999


Q ss_pred             HHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCCcEEEEcC----CCcccCCHHHHhccCCCeEEEecc
Q psy4626          89 GKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTAT----GNKNVVTREHMDKMKNGCVVCNMG  164 (542)
Q Consensus        89 G~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~aDvVi~at----G~~~lI~~e~l~~mk~GailvnvG  164 (542)
                      |+.+|++|++||++|++||+-..+.......++...++++++++||+|+.++    .|+++|+++.|++||+|+++||+|
T Consensus       154 G~~va~~l~afgm~v~~~d~~~~~~~~~~~~~~~~~~Ld~lL~~sDiv~lh~PlT~eT~g~i~~~~~a~MK~gailIN~a  233 (324)
T COG0111         154 GRAVAKRLKAFGMKVIGYDPYSPRERAGVDGVVGVDSLDELLAEADILTLHLPLTPETRGLINAEELAKMKPGAILINAA  233 (324)
T ss_pred             HHHHHHHHHhCCCeEEEECCCCchhhhccccceecccHHHHHhhCCEEEEcCCCCcchhcccCHHHHhhCCCCeEEEECC
Confidence            9999999999999999999633333222233445677999999999999953    589999999999999999999999


Q ss_pred             CCC---cccChHhhcCCC-----cceeeeccceeeEecCCCCEEEEecCCCcccccCCCChhHHHhhHHHHHHHHHHHHh
Q psy4626         165 HSN---TEIDVNSLRTPD-----LTWEKVRSQVDHVIWPDGKRIVLLAEGRLVNLSCSSLPSFVVSITACTQALALIELF  236 (542)
Q Consensus       165 ~g~---~eid~~aL~~~~-----l~v~~~~~~v~~y~~~dg~~I~LLa~GrLvnl~~~thp~~vmd~sfa~q~la~~~L~  236 (542)
                      ||.   .+..+++|..+.     +++++.+|......+-+-..+.+.     ||.+.+|..+   ....+.++..++..|
T Consensus       234 RG~vVde~aL~~AL~~G~i~gA~lDVf~~EPl~~~~pL~~~pnV~~T-----PHia~~T~ea---~~~~~~~~~~~i~~~  305 (324)
T COG0111         234 RGGVVDEDALLAALDSGKIAGAALDVFEEEPLPADSPLWDLPNVILT-----PHIGGSTDEA---QERVAEIVAENIVRY  305 (324)
T ss_pred             CcceecHHHHHHHHHcCCcceEEecCCCCCCCCCCChhhcCCCeEEC-----CcccccCHHH---HHHHHHHHHHHHHHH
Confidence            995   455567777654     345554443221111000112222     4555544221   234555666666666


Q ss_pred             cCC
Q psy4626         237 NAP  239 (542)
Q Consensus       237 ~~~  239 (542)
                      ..+
T Consensus       306 l~g  308 (324)
T COG0111         306 LAG  308 (324)
T ss_pred             HcC
Confidence            654

>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]

Probab=99.67  E-value=1.1e-15  Score=159.22  Aligned_cols=161  Identities=17%  Similarity=0.304  Sum_probs=119.0

Q ss_pred             CCceee-----ceecccHHhhhcccccceeecCchhhhHHHHhHHHHHHHHHH-----------HHH-------hhcCcc
Q psy4626          18 KNARIV-----GCTHINAQTAAGKLTVPAMNVNDSVTKTKFDNLYMCRESIID-----------SLK-------RSTDVM   74 (542)
Q Consensus        18 ~G~~i~-----~~lh~~~~tA~~~L~~PV~~vn~s~~K~~fd~~~g~~~s~~~-----------ai~-------r~~~~~   74 (542)
                      .+.+++     |+.|++++.|. ...+-|.++.+..+....|...+.--++..           +-+       ...+..
T Consensus        65 p~LKlIa~~~~G~D~vDl~aa~-~~gI~Vtnvp~~~t~sVAe~~~aLiLa~~R~~~~~~~~~r~g~w~~~~~~~~~~~~~  143 (324)
T COG1052          65 PGLKLIATRSAGYDNVDLEAAK-ERGITVTNVPGYSTEAVAEHAVALILALARRIHEGDRRVREGNWSLSGGPDPLLGFD  143 (324)
T ss_pred             CCcEEEEEeccccCcccHHHHH-HCCcEEEeCCCCCchHHHHHHHHHHHHHhhchHHHHHHHhcCcccccCCcccccccC
Confidence            455655     77799999886 566778888876554444333333222211           100       012346


Q ss_pred             ccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCCcEEEEcC----CCcccCCHHH
Q psy4626          75 FGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTAT----GNKNVVTREH  150 (542)
Q Consensus        75 l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~aDvVi~at----G~~~lI~~e~  150 (542)
                      +.|||++|+|+|.||+.+|+++++|||+|+++++.|. .......++...+++++++++|+|+.+.    .|+|+|+++.
T Consensus       144 l~gktvGIiG~GrIG~avA~r~~~Fgm~v~y~~~~~~-~~~~~~~~~~y~~l~ell~~sDii~l~~Plt~~T~hLin~~~  222 (324)
T COG1052         144 LRGKTLGIIGLGRIGQAVARRLKGFGMKVLYYDRSPN-PEAEKELGARYVDLDELLAESDIISLHCPLTPETRHLINAEE  222 (324)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCCC-hHHHhhcCceeccHHHHHHhCCEEEEeCCCChHHhhhcCHHH
Confidence            8899999999999999999999999999999998876 3333445577777999999999999943    3889999999


Q ss_pred             HhccCCCeEEEeccCCC---cccChHhhcCCCc
Q psy4626         151 MDKMKNGCVVCNMGHSN---TEIDVNSLRTPDL  180 (542)
Q Consensus       151 l~~mk~GailvnvG~g~---~eid~~aL~~~~l  180 (542)
                      |++||+|+++||+|||.   ....+++|+++.+
T Consensus       223 l~~mk~ga~lVNtaRG~~VDe~ALi~AL~~g~i  255 (324)
T COG1052         223 LAKMKPGAILVNTARGGLVDEQALIDALKSGKI  255 (324)
T ss_pred             HHhCCCCeEEEECCCccccCHHHHHHHHHhCCc
Confidence            99999999999999995   3445677776643

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=99.65  E-value=7.9e-16  Score=147.18  Aligned_cols=110  Identities=25%  Similarity=0.382  Sum_probs=90.2

Q ss_pred             hcCccccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCCcEEEEcC----CCccc
Q psy4626          70 STDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTAT----GNKNV  145 (542)
Q Consensus        70 ~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~aDvVi~at----G~~~l  145 (542)
                      ..+..+.|++|+|+|+|.||+.+|++|++||++|+++|+++.....+...++...+++++++.+|+|+.+.    .|.++
T Consensus        29 ~~~~~l~g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~~~~~~~~l~ell~~aDiv~~~~plt~~T~~l  108 (178)
T PF02826_consen   29 FPGRELRGKTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEEGADEFGVEYVSLDELLAQADIVSLHLPLTPETRGL  108 (178)
T ss_dssp             TTBS-STTSEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHHHHHHTTEEESSHHHHHHH-SEEEE-SSSSTTTTTS
T ss_pred             CCccccCCCEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhhhcccccceeeehhhhcchhhhhhhhhcccccccee
Confidence            34567899999999999999999999999999999999887655445567788889999999999999953    47899


Q ss_pred             CCHHHHhccCCCeEEEeccCCC---cccChHhhcCCC
Q psy4626         146 VTREHMDKMKNGCVVCNMGHSN---TEIDVNSLRTPD  179 (542)
Q Consensus       146 I~~e~l~~mk~GailvnvG~g~---~eid~~aL~~~~  179 (542)
                      |+++.|++||+|+++||+|||+   .+..+++|+.+.
T Consensus       109 i~~~~l~~mk~ga~lvN~aRG~~vde~aL~~aL~~g~  145 (178)
T PF02826_consen  109 INAEFLAKMKPGAVLVNVARGELVDEDALLDALESGK  145 (178)
T ss_dssp             BSHHHHHTSTTTEEEEESSSGGGB-HHHHHHHHHTTS
T ss_pred             eeeeeeeccccceEEEeccchhhhhhhHHHHHHhhcc
Confidence            9999999999999999999995   344456776653

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>PRK08410 2-hydroxyacid dehydrogenase; Provisional

Probab=99.62  E-value=8.7e-15  Score=151.92  Aligned_cols=104  Identities=20%  Similarity=0.358  Sum_probs=87.9

Q ss_pred             ccccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCCcEEEEcC----CCcccCCH
Q psy4626          73 VMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTAT----GNKNVVTR  148 (542)
Q Consensus        73 ~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~aDvVi~at----G~~~lI~~  148 (542)
                      ..+.|+||+|+|+|.||+.+|+++++|||+|+++|+.+..    ...++...+++++++.||+|+.+.    .|+++|++
T Consensus       141 ~~L~gktvGIiG~G~IG~~vA~~~~~fgm~V~~~d~~~~~----~~~~~~~~~l~ell~~sDvv~lh~Plt~~T~~li~~  216 (311)
T PRK08410        141 GEIKGKKWGIIGLGTIGKRVAKIAQAFGAKVVYYSTSGKN----KNEEYERVSLEELLKTSDIISIHAPLNEKTKNLIAY  216 (311)
T ss_pred             cccCCCEEEEECCCHHHHHHHHHHhhcCCEEEEECCCccc----cccCceeecHHHHhhcCCEEEEeCCCCchhhcccCH
Confidence            4689999999999999999999999999999999864321    234666779999999999999953    58899999


Q ss_pred             HHHhccCCCeEEEeccCCC---cccChHhhcCCCc
Q psy4626         149 EHMDKMKNGCVVCNMGHSN---TEIDVNSLRTPDL  180 (542)
Q Consensus       149 e~l~~mk~GailvnvG~g~---~eid~~aL~~~~l  180 (542)
                      +.|++||+|+++||+|||.   .+..+++|+.+.+
T Consensus       217 ~~~~~Mk~~a~lIN~aRG~vVDe~AL~~AL~~g~i  251 (311)
T PRK08410        217 KELKLLKDGAILINVGRGGIVNEKDLAKALDEKDI  251 (311)
T ss_pred             HHHHhCCCCeEEEECCCccccCHHHHHHHHHcCCe
Confidence            9999999999999999995   4555677776643

>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional

Probab=99.62  E-value=1.1e-14  Score=151.81  Aligned_cols=107  Identities=16%  Similarity=0.203  Sum_probs=88.2

Q ss_pred             CccccCcEEEEEcCChhHHHHHHHHH-hCCCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCCcEEEEcC----CCcccC
Q psy4626          72 DVMFGGKQVVLCGYGEVGKGCCQSLK-GLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTAT----GNKNVV  146 (542)
Q Consensus        72 ~~~l~GktVvViG~G~IG~~vA~~l~-~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~aDvVi~at----G~~~lI  146 (542)
                      +..+.|+|++|+|+|.||+.+|++|+ +|||+|+++|+.+.. ......|....++++++++||+|+.+.    .|+++|
T Consensus       140 g~~L~gktvGIiG~G~IG~~va~~l~~~fgm~V~~~~~~~~~-~~~~~~~~~~~~l~ell~~sDvv~lh~plt~~T~~li  218 (323)
T PRK15409        140 GTDVHHKTLGIVGMGRIGMALAQRAHFGFNMPILYNARRHHK-EAEERFNARYCDLDTLLQESDFVCIILPLTDETHHLF  218 (323)
T ss_pred             cCCCCCCEEEEEcccHHHHHHHHHHHhcCCCEEEEECCCCch-hhHHhcCcEecCHHHHHHhCCEEEEeCCCChHHhhcc
Confidence            34689999999999999999999998 999999999865322 112344666779999999999999953    578999


Q ss_pred             CHHHHhccCCCeEEEeccCCC---cccChHhhcCCC
Q psy4626         147 TREHMDKMKNGCVVCNMGHSN---TEIDVNSLRTPD  179 (542)
Q Consensus       147 ~~e~l~~mk~GailvnvG~g~---~eid~~aL~~~~  179 (542)
                      +++.|++||+|+++||+|||.   .+..+++|..+.
T Consensus       219 ~~~~l~~mk~ga~lIN~aRG~vVde~AL~~AL~~g~  254 (323)
T PRK15409        219 GAEQFAKMKSSAIFINAGRGPVVDENALIAALQKGE  254 (323)
T ss_pred             CHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCC
Confidence            999999999999999999995   455567777654

>PRK06487 glycerate dehydrogenase; Provisional

Probab=99.57  E-value=5.1e-14  Score=146.58  Aligned_cols=101  Identities=20%  Similarity=0.324  Sum_probs=84.5

Q ss_pred             ccccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCCcEEEEcC----CCcccCCH
Q psy4626          73 VMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTAT----GNKNVVTR  148 (542)
Q Consensus        73 ~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~aDvVi~at----G~~~lI~~  148 (542)
                      ..+.|++|+|+|+|.||+.+|++|++|||+|+++++.+.      ...+..++++++++.||+|+.+.    .|+++|++
T Consensus       144 ~~l~gktvgIiG~G~IG~~vA~~l~~fgm~V~~~~~~~~------~~~~~~~~l~ell~~sDiv~l~lPlt~~T~~li~~  217 (317)
T PRK06487        144 VELEGKTLGLLGHGELGGAVARLAEAFGMRVLIGQLPGR------PARPDRLPLDELLPQVDALTLHCPLTEHTRHLIGA  217 (317)
T ss_pred             cccCCCEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCC------cccccccCHHHHHHhCCEEEECCCCChHHhcCcCH
Confidence            368999999999999999999999999999999986421      11234568999999999999953    58899999


Q ss_pred             HHHhccCCCeEEEeccCCC---cccChHhhcCCC
Q psy4626         149 EHMDKMKNGCVVCNMGHSN---TEIDVNSLRTPD  179 (542)
Q Consensus       149 e~l~~mk~GailvnvG~g~---~eid~~aL~~~~  179 (542)
                      +.|++||+|+++||+|||.   .+..+++|+.+.
T Consensus       218 ~~~~~mk~ga~lIN~aRG~vVde~AL~~AL~~g~  251 (317)
T PRK06487        218 RELALMKPGALLINTARGGLVDEQALADALRSGH  251 (317)
T ss_pred             HHHhcCCCCeEEEECCCccccCHHHHHHHHHcCC
Confidence            9999999999999999995   344466777654

>PRK06932 glycerate dehydrogenase; Provisional

Probab=99.55  E-value=7.6e-14  Score=145.10  Aligned_cols=102  Identities=19%  Similarity=0.262  Sum_probs=83.8

Q ss_pred             ccccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCCcEEEEcC----CCcccCCH
Q psy4626          73 VMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTAT----GNKNVVTR  148 (542)
Q Consensus        73 ~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~aDvVi~at----G~~~lI~~  148 (542)
                      ..+.|+||+|+|+|.||+.+|+++++|||+|+++++.+..     .......+++++++.||+|+.+.    .|+++|++
T Consensus       143 ~~l~gktvgIiG~G~IG~~va~~l~~fg~~V~~~~~~~~~-----~~~~~~~~l~ell~~sDiv~l~~Plt~~T~~li~~  217 (314)
T PRK06932        143 TDVRGSTLGVFGKGCLGTEVGRLAQALGMKVLYAEHKGAS-----VCREGYTPFEEVLKQADIVTLHCPLTETTQNLINA  217 (314)
T ss_pred             cccCCCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCccc-----ccccccCCHHHHHHhCCEEEEcCCCChHHhcccCH
Confidence            3689999999999999999999999999999999854321     11122468999999999999954    48899999


Q ss_pred             HHHhccCCCeEEEeccCCC---cccChHhhcCCC
Q psy4626         149 EHMDKMKNGCVVCNMGHSN---TEIDVNSLRTPD  179 (542)
Q Consensus       149 e~l~~mk~GailvnvG~g~---~eid~~aL~~~~  179 (542)
                      +.|++||+|+++||+|||.   .+..+++|..+.
T Consensus       218 ~~l~~mk~ga~lIN~aRG~~Vde~AL~~aL~~g~  251 (314)
T PRK06932        218 ETLALMKPTAFLINTGRGPLVDEQALLDALENGK  251 (314)
T ss_pred             HHHHhCCCCeEEEECCCccccCHHHHHHHHHcCC
Confidence            9999999999999999995   344456777654

>PLN02928 oxidoreductase family protein

Probab=99.55  E-value=1.5e-13  Score=144.75  Aligned_cols=107  Identities=21%  Similarity=0.305  Sum_probs=85.8

Q ss_pred             ccccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhh------------hcCCceeeCHHHHhcCCcEEEEcC
Q psy4626          73 VMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQA------------CMDGFSVVKLNEVIRTVDIVVTAT  140 (542)
Q Consensus        73 ~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A------------~~~G~~v~~l~e~l~~aDvVi~at  140 (542)
                      ..+.|++++|+|+|.||+.+|+.|++||++|+++|++..+....            ...+....++++++++||+|+.+.
T Consensus       155 ~~l~gktvGIiG~G~IG~~vA~~l~afG~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ell~~aDiVvl~l  234 (347)
T PLN02928        155 DTLFGKTVFILGYGAIGIELAKRLRPFGVKLLATRRSWTSEPEDGLLIPNGDVDDLVDEKGGHEDIYEFAGEADIVVLCC  234 (347)
T ss_pred             cCCCCCEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCChhhhhhhccccccccccccccCcccCHHHHHhhCCEEEECC
Confidence            46899999999999999999999999999999998763221111            011124568899999999999964


Q ss_pred             ----CCcccCCHHHHhccCCCeEEEeccCCC---cccChHhhcCCC
Q psy4626         141 ----GNKNVVTREHMDKMKNGCVVCNMGHSN---TEIDVNSLRTPD  179 (542)
Q Consensus       141 ----G~~~lI~~e~l~~mk~GailvnvG~g~---~eid~~aL~~~~  179 (542)
                          .|+++|+++.|++||+|+++||+|||.   .+..+++|..+.
T Consensus       235 Plt~~T~~li~~~~l~~Mk~ga~lINvaRG~lVde~AL~~AL~~g~  280 (347)
T PLN02928        235 TLTKETAGIVNDEFLSSMKKGALLVNIARGGLLDYDAVLAALESGH  280 (347)
T ss_pred             CCChHhhcccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCC
Confidence                588999999999999999999999995   444566777654

>PLN03139 formate dehydrogenase; Provisional

Probab=99.54  E-value=1.1e-13  Score=147.21  Aligned_cols=156  Identities=20%  Similarity=0.263  Sum_probs=108.5

Q ss_pred             ceecccHHhhhcccccceeecCchhhhHHHHhHHH---------------HHHHHHHHHH-hhcCccccCcEEEEEcCCh
Q psy4626          24 GCTHINAQTAAGKLTVPAMNVNDSVTKTKFDNLYM---------------CRESIIDSLK-RSTDVMFGGKQVVLCGYGE   87 (542)
Q Consensus        24 ~~lh~~~~tA~~~L~~PV~~vn~s~~K~~fd~~~g---------------~~~s~~~ai~-r~~~~~l~GktVvViG~G~   87 (542)
                      |+.|++.+.+. .-.++|+++.++......+...+               ..+..|..-. ...+..+.|++|+|+|+|.
T Consensus       131 G~D~iDl~aa~-~~gI~V~n~~g~na~sVAE~al~liL~l~R~~~~~~~~~~~g~W~~~~~~~~~~~L~gktVGIVG~G~  209 (386)
T PLN03139        131 GSDHIDLPAAA-AAGLTVAEVTGSNVVSVAEDELMRILILLRNFLPGYHQVVSGEWNVAGIAYRAYDLEGKTVGTVGAGR  209 (386)
T ss_pred             cccccCHHHHH-HCCeEEEECCCcCcHHHHHHHHHHHHHHHcCcHHHHHHHHhCCCccccccCCCcCCCCCEEEEEeecH
Confidence            56677776654 35677887766432222111111               1112232100 0123468999999999999


Q ss_pred             hHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCcee-eCHHHHhcCCcEEEEcC----CCcccCCHHHHhccCCCeEEEe
Q psy4626          88 VGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV-VKLNEVIRTVDIVVTAT----GNKNVVTREHMDKMKNGCVVCN  162 (542)
Q Consensus        88 IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v-~~l~e~l~~aDvVi~at----G~~~lI~~e~l~~mk~Gailvn  162 (542)
                      ||+.+|++|++||++|+++|+++.........|+.. .+++++++.+|+|+.+.    .+.++++++.|+.||+|+++||
T Consensus       210 IG~~vA~~L~afG~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN  289 (386)
T PLN03139        210 IGRLLLQRLKPFNCNLLYHDRLKMDPELEKETGAKFEEDLDAMLPKCDVVVINTPLTEKTRGMFNKERIAKMKKGVLIVN  289 (386)
T ss_pred             HHHHHHHHHHHCCCEEEEECCCCcchhhHhhcCceecCCHHHHHhhCCEEEEeCCCCHHHHHHhCHHHHhhCCCCeEEEE
Confidence            999999999999999999997754333333456554 48999999999999964    4789999999999999999999


Q ss_pred             ccCCC---cccChHhhcCCCc
Q psy4626         163 MGHSN---TEIDVNSLRTPDL  180 (542)
Q Consensus       163 vG~g~---~eid~~aL~~~~l  180 (542)
                      +|||.   .+..+++|..+.+
T Consensus       290 ~aRG~iVDe~AL~~AL~sG~l  310 (386)
T PLN03139        290 NARGAIMDTQAVADACSSGHI  310 (386)
T ss_pred             CCCCchhhHHHHHHHHHcCCc
Confidence            99995   3444567776543

>PRK07574 formate dehydrogenase; Provisional

Probab=99.53  E-value=1.5e-13  Score=146.24  Aligned_cols=107  Identities=17%  Similarity=0.278  Sum_probs=87.4

Q ss_pred             ccccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce-eeCHHHHhcCCcEEEEcC----CCcccCC
Q psy4626          73 VMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVKLNEVIRTVDIVVTAT----GNKNVVT  147 (542)
Q Consensus        73 ~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~-v~~l~e~l~~aDvVi~at----G~~~lI~  147 (542)
                      ..+.|++|+|+|+|.||+.+|++|++||++|+++|+.+.........|.. ..+++++++.||+|+.+.    .+.++++
T Consensus       188 ~~L~gktVGIvG~G~IG~~vA~~l~~fG~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~  267 (385)
T PRK07574        188 YDLEGMTVGIVGAGRIGLAVLRRLKPFDVKLHYTDRHRLPEEVEQELGLTYHVSFDSLVSVCDVVTIHCPLHPETEHLFD  267 (385)
T ss_pred             eecCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCchhhHhhcCceecCCHHHHhhcCCEEEEcCCCCHHHHHHhC
Confidence            46899999999999999999999999999999999775332223344554 468999999999999965    3778999


Q ss_pred             HHHHhccCCCeEEEeccCCC---cccChHhhcCCC
Q psy4626         148 REHMDKMKNGCVVCNMGHSN---TEIDVNSLRTPD  179 (542)
Q Consensus       148 ~e~l~~mk~GailvnvG~g~---~eid~~aL~~~~  179 (542)
                      ++.|+.||+|+++||+|||.   .+...++|..+.
T Consensus       268 ~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG~  302 (385)
T PRK07574        268 ADVLSRMKRGSYLVNTARGKIVDRDAVVRALESGH  302 (385)
T ss_pred             HHHHhcCCCCcEEEECCCCchhhHHHHHHHHHhCC
Confidence            99999999999999999995   344456777654

>PRK13243 glyoxylate reductase; Reviewed

Probab=99.52  E-value=3.7e-13  Score=141.05  Aligned_cols=106  Identities=21%  Similarity=0.277  Sum_probs=88.4

Q ss_pred             ccccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCCcEEEEcC----CCcccCCH
Q psy4626          73 VMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTAT----GNKNVVTR  148 (542)
Q Consensus        73 ~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~aDvVi~at----G~~~lI~~  148 (542)
                      ..+.|++|+|+|+|.||+.+|++|+++|++|+++|+++... .+...|+...+++++++.||+|+.+.    .+.+++++
T Consensus       146 ~~L~gktvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~-~~~~~~~~~~~l~ell~~aDiV~l~lP~t~~T~~~i~~  224 (333)
T PRK13243        146 YDVYGKTIGIIGFGRIGQAVARRAKGFGMRILYYSRTRKPE-AEKELGAEYRPLEELLRESDFVSLHVPLTKETYHMINE  224 (333)
T ss_pred             cCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCChh-hHHHcCCEecCHHHHHhhCCEEEEeCCCChHHhhccCH
Confidence            46899999999999999999999999999999999876433 23344666678999999999999965    36789999


Q ss_pred             HHHhccCCCeEEEeccCCC---cccChHhhcCCC
Q psy4626         149 EHMDKMKNGCVVCNMGHSN---TEIDVNSLRTPD  179 (542)
Q Consensus       149 e~l~~mk~GailvnvG~g~---~eid~~aL~~~~  179 (542)
                      +.|+.||+|++++|+|||.   .+....+|..+.
T Consensus       225 ~~~~~mk~ga~lIN~aRg~~vd~~aL~~aL~~g~  258 (333)
T PRK13243        225 ERLKLMKPTAILVNTARGKVVDTKALVKALKEGW  258 (333)
T ss_pred             HHHhcCCCCeEEEECcCchhcCHHHHHHHHHcCC
Confidence            9999999999999999995   344456777654

>PLN02306 hydroxypyruvate reductase

Probab=99.52  E-value=3e-13  Score=144.19  Aligned_cols=155  Identities=16%  Similarity=0.270  Sum_probs=104.8

Q ss_pred             ceecccHHhhhcccccceeecCchhhhHHHHhHHHHH---------------HHHHHHHHh--hcCccccCcEEEEEcCC
Q psy4626          24 GCTHINAQTAAGKLTVPAMNVNDSVTKTKFDNLYMCR---------------ESIIDSLKR--STDVMFGGKQVVLCGYG   86 (542)
Q Consensus        24 ~~lh~~~~tA~~~L~~PV~~vn~s~~K~~fd~~~g~~---------------~s~~~ai~r--~~~~~l~GktVvViG~G   86 (542)
                      |..|++.+.+. ...++|.++.+.......+...+.-               +..|.....  ..+..+.|++|+|+|+|
T Consensus        96 G~D~iD~~aa~-~~gI~V~n~pg~~~~~VAE~al~liLal~R~i~~~~~~~~~g~w~~~~~~~~~g~~L~gktvGIiG~G  174 (386)
T PLN02306         96 GYNNVDVEAAN-KYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYEGWLPHLFVGNLLKGQTVGVIGAG  174 (386)
T ss_pred             ccccccHHHHH-HCCCEEEECCCcCHHHHHHHHHHHHHHHHhChHHHHHHHHcCCCccccccccCCcCCCCCEEEEECCC
Confidence            55688887765 4577888887643222222111111               111111100  12346899999999999


Q ss_pred             hhHHHHHHHHH-hCCCEEEEEeCCchhhhhh--hcCC------------ce-eeCHHHHhcCCcEEEEc----CCCcccC
Q psy4626          87 EVGKGCCQSLK-GLGCVIYITEIDPICALQA--CMDG------------FS-VVKLNEVIRTVDIVVTA----TGNKNVV  146 (542)
Q Consensus        87 ~IG~~vA~~l~-~~Ga~Viv~d~dp~r~~~A--~~~G------------~~-v~~l~e~l~~aDvVi~a----tG~~~lI  146 (542)
                      .||+.+|++++ +|||+|+++|+.+......  ...|            .. ..+++++++.||+|+.+    ..|+++|
T Consensus       175 ~IG~~vA~~l~~~fGm~V~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~~sDiV~lh~Plt~~T~~li  254 (386)
T PLN02306        175 RIGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLREADVISLHPVLDKTTYHLI  254 (386)
T ss_pred             HHHHHHHHHHHhcCCCEEEEECCCCchhhhhhhhhhcccccccccccccccccCCHHHHHhhCCEEEEeCCCChhhhhhc
Confidence            99999999985 9999999999765321110  0111            12 34789999999999994    3588999


Q ss_pred             CHHHHhccCCCeEEEeccCCC---cccChHhhcCCC
Q psy4626         147 TREHMDKMKNGCVVCNMGHSN---TEIDVNSLRTPD  179 (542)
Q Consensus       147 ~~e~l~~mk~GailvnvG~g~---~eid~~aL~~~~  179 (542)
                      +++.|++||+|+++||+|||.   .+..+++|..+.
T Consensus       255 n~~~l~~MK~ga~lIN~aRG~lVDe~AL~~AL~sg~  290 (386)
T PLN02306        255 NKERLALMKKEAVLVNASRGPVIDEVALVEHLKANP  290 (386)
T ss_pred             CHHHHHhCCCCeEEEECCCccccCHHHHHHHHHhCC
Confidence            999999999999999999995   344456776553

>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=99.51  E-value=3.8e-13  Score=144.61  Aligned_cols=151  Identities=21%  Similarity=0.321  Sum_probs=105.6

Q ss_pred             ceecccHHhhhcccccceeecCchhhhHHHHhHHHH---------------HHHHHHHHHhhcCccccCcEEEEEcCChh
Q psy4626          24 GCTHINAQTAAGKLTVPAMNVNDSVTKTKFDNLYMC---------------RESIIDSLKRSTDVMFGGKQVVLCGYGEV   88 (542)
Q Consensus        24 ~~lh~~~~tA~~~L~~PV~~vn~s~~K~~fd~~~g~---------------~~s~~~ai~r~~~~~l~GktVvViG~G~I   88 (542)
                      |..|++.+.+. ...++|+++.+.......+...+.               .+..|+.- ...+..+.||||+|+|+|.|
T Consensus        85 G~d~id~~~~~-~~gI~V~n~pg~~~~aVAE~~i~l~L~~~R~~~~~~~~~~~g~w~~~-~~~~~~L~gktvGIiG~G~I  162 (409)
T PRK11790         85 GTNQVDLDAAA-KRGIPVFNAPFSNTRSVAELVIGEIILLLRGIPEKNAKAHRGGWNKS-AAGSFEVRGKTLGIVGYGHI  162 (409)
T ss_pred             ecccccHHHHH-hCCCEEEeCCCCChHHHHHHHHHHHHHHHcChHHHHHHHHcCccccc-ccCcccCCCCEEEEECCCHH
Confidence            55677776554 457788887764322221111111               11112210 01235789999999999999


Q ss_pred             HHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce-eeCHHHHhcCCcEEEEcC----CCcccCCHHHHhccCCCeEEEec
Q psy4626          89 GKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVKLNEVIRTVDIVVTAT----GNKNVVTREHMDKMKNGCVVCNM  163 (542)
Q Consensus        89 G~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~-v~~l~e~l~~aDvVi~at----G~~~lI~~e~l~~mk~Gailvnv  163 (542)
                      |+.+|+++++||++|++||+.+..    ...++. +.+++++++.||+|+.+.    .|+++++++.|++||+|++++|+
T Consensus       163 G~~vA~~~~~fGm~V~~~d~~~~~----~~~~~~~~~~l~ell~~sDiVslh~Plt~~T~~li~~~~l~~mk~ga~lIN~  238 (409)
T PRK11790        163 GTQLSVLAESLGMRVYFYDIEDKL----PLGNARQVGSLEELLAQSDVVSLHVPETPSTKNMIGAEELALMKPGAILINA  238 (409)
T ss_pred             HHHHHHHHHHCCCEEEEECCCccc----ccCCceecCCHHHHHhhCCEEEEcCCCChHHhhccCHHHHhcCCCCeEEEEC
Confidence            999999999999999999965421    112333 458999999999999954    48899999999999999999999


Q ss_pred             cCCC---cccChHhhcCCCc
Q psy4626         164 GHSN---TEIDVNSLRTPDL  180 (542)
Q Consensus       164 G~g~---~eid~~aL~~~~l  180 (542)
                      |||.   .+..+++|.++.+
T Consensus       239 aRG~~vde~aL~~aL~~g~i  258 (409)
T PRK11790        239 SRGTVVDIDALADALKSGHL  258 (409)
T ss_pred             CCCcccCHHHHHHHHHcCCc
Confidence            9995   3444567776643

>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase

Probab=99.51  E-value=2.5e-13  Score=150.40  Aligned_cols=153  Identities=19%  Similarity=0.252  Sum_probs=107.6

Q ss_pred             ceecccHHhhhcccccceeecCchhhhHHHHhHHHHH---------------HHHHHHHHhhcCccccCcEEEEEcCChh
Q psy4626          24 GCTHINAQTAAGKLTVPAMNVNDSVTKTKFDNLYMCR---------------ESIIDSLKRSTDVMFGGKQVVLCGYGEV   88 (542)
Q Consensus        24 ~~lh~~~~tA~~~L~~PV~~vn~s~~K~~fd~~~g~~---------------~s~~~ai~r~~~~~l~GktVvViG~G~I   88 (542)
                      |..|++.+.+. ...++|+++.+.......+...+.-               +.-|.. ....+..+.||+|+|+|+|.|
T Consensus        72 G~d~id~~~~~-~~gI~V~n~pg~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~-~~~~g~~l~gktvgIiG~G~I  149 (525)
T TIGR01327        72 GVDNIDIEAAT-ARGILVVNAPTGNTISAAEHALAMLLAAARNIPQADASLKEGEWDR-KAFMGTELYGKTLGVIGLGRI  149 (525)
T ss_pred             ccchhcHHHHH-HCCCEEEeCCCcChHHHHHHHHHHHHHHhcCHHHHHHHHHcCCccc-cccCccccCCCEEEEECCCHH
Confidence            55577776654 4577888877643322222221111               111211 001235689999999999999


Q ss_pred             HHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceee-CHHHHhcCCcEEEEcC----CCcccCCHHHHhccCCCeEEEec
Q psy4626          89 GKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVV-KLNEVIRTVDIVVTAT----GNKNVVTREHMDKMKNGCVVCNM  163 (542)
Q Consensus        89 G~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~-~l~e~l~~aDvVi~at----G~~~lI~~e~l~~mk~Gailvnv  163 (542)
                      |+.+|++|++||++|++||+.... ..+...|+... +++++++.+|+|+.+.    .+.++++++.|+.||+|++++|+
T Consensus       150 G~~vA~~l~~fG~~V~~~d~~~~~-~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~  228 (525)
T TIGR01327       150 GSIVAKRAKAFGMKVLAYDPYISP-ERAEQLGVELVDDLDELLARADFITVHTPLTPETRGLIGAEELAKMKKGVIIVNC  228 (525)
T ss_pred             HHHHHHHHHhCCCEEEEECCCCCh-hHHHhcCCEEcCCHHHHHhhCCEEEEccCCChhhccCcCHHHHhcCCCCeEEEEc
Confidence            999999999999999999864222 22445576654 7999999999999954    47899999999999999999999


Q ss_pred             cCCC---cccChHhhcCCC
Q psy4626         164 GHSN---TEIDVNSLRTPD  179 (542)
Q Consensus       164 G~g~---~eid~~aL~~~~  179 (542)
                      |||.   .+..+++|..+.
T Consensus       229 aRG~~vde~aL~~aL~~g~  247 (525)
T TIGR01327       229 ARGGIIDEAALYEALEEGH  247 (525)
T ss_pred             CCCceeCHHHHHHHHHcCC
Confidence            9995   344456777654

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.

>KOG0068|consensus

Probab=99.49  E-value=4.5e-13  Score=137.08  Aligned_cols=161  Identities=16%  Similarity=0.209  Sum_probs=114.0

Q ss_pred             CCCCceeeceecccHHhhhcccccceeecCchhhhHHHHhHHHHHHHHHHHHH--------------hhcCccccCcEEE
Q psy4626          16 PLKNARIVGCTHINAQTAAGKLTVPAMNVNDSVTKTKFDNLYMCRESIIDSLK--------------RSTDVMFGGKQVV   81 (542)
Q Consensus        16 pl~G~~i~~~lh~~~~tA~~~L~~PV~~vn~s~~K~~fd~~~g~~~s~~~ai~--------------r~~~~~l~GktVv   81 (542)
                      -+-|+.-+|...++.+.|. .-.+-|+++..+-+....+.-.|.--|+..-+-              ...+..+.|||++
T Consensus        72 kvVgrag~G~dNVDL~AAt-e~gi~Vvn~P~~Ns~saAEltigli~SLaR~i~~A~~s~k~g~wnr~~~~G~el~GKTLg  150 (406)
T KOG0068|consen   72 KVVGRAGIGVDNVDLKAAT-ENGILVVNTPTANSRSAAELTIGLILSLARQIGQASASMKEGKWNRVKYLGWELRGKTLG  150 (406)
T ss_pred             EEEEecccCccccChhhHH-hCCeEEEeCCCCChHHHHHHHHHHHHHHhhhcchhheeeecCceeecceeeeEEeccEEE
Confidence            3456666677777776652 223346666555443333322222222211111              1135678999999


Q ss_pred             EEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCCcEEEEc----CCCcccCCHHHHhccCCC
Q psy4626          82 LCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTA----TGNKNVVTREHMDKMKNG  157 (542)
Q Consensus        82 ViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~aDvVi~a----tG~~~lI~~e~l~~mk~G  157 (542)
                      |+|+|.||+.+|.+++++|++|+.+|.-.. ..++...|.+.++++|++..||+|..+    ..|.++++.+.|.+||+|
T Consensus       151 vlG~GrIGseVA~r~k~~gm~vI~~dpi~~-~~~~~a~gvq~vsl~Eil~~ADFitlH~PLtP~T~~lin~~tfA~mKkG  229 (406)
T KOG0068|consen  151 VLGLGRIGSEVAVRAKAMGMHVIGYDPITP-MALAEAFGVQLVSLEEILPKADFITLHVPLTPSTEKLLNDETFAKMKKG  229 (406)
T ss_pred             EeecccchHHHHHHHHhcCceEEeecCCCc-hHHHHhccceeeeHHHHHhhcCEEEEccCCCcchhhccCHHHHHHhhCC
Confidence            999999999999999999999999984332 234667899999999999999999984    358899999999999999


Q ss_pred             eEEEeccCCC---cccChHhhcCC
Q psy4626         158 CVVCNMGHSN---TEIDVNSLRTP  178 (542)
Q Consensus       158 ailvnvG~g~---~eid~~aL~~~  178 (542)
                      .++||++||.   ....++++..+
T Consensus       230 VriIN~aRGGvVDe~ALv~Al~sG  253 (406)
T KOG0068|consen  230 VRIINVARGGVVDEPALVRALDSG  253 (406)
T ss_pred             cEEEEecCCceechHHHHHHHhcC
Confidence            9999999995   34445566544

>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional

Probab=99.49  E-value=1.9e-13  Score=145.11  Aligned_cols=106  Identities=18%  Similarity=0.242  Sum_probs=85.5

Q ss_pred             hhcCccccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCCcEEEEcCC-------
Q psy4626          69 RSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATG-------  141 (542)
Q Consensus        69 r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~aDvVi~atG-------  141 (542)
                      |..+..+.|+||+|+|+|.||+.+|++|+++|++|+++|+  .+...  .......++++++++||+|+.++.       
T Consensus       108 r~~g~~L~gktvGIIG~G~IG~~vA~~l~a~G~~V~~~dp--~~~~~--~~~~~~~~L~ell~~sDiI~lh~PLt~~g~~  183 (378)
T PRK15438        108 ERDGFSLHDRTVGIVGVGNVGRRLQARLEALGIKTLLCDP--PRADR--GDEGDFRSLDELVQEADILTFHTPLFKDGPY  183 (378)
T ss_pred             ccCCCCcCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECC--ccccc--ccccccCCHHHHHhhCCEEEEeCCCCCCccc
Confidence            3345678999999999999999999999999999999984  33221  122345689999999999998432       


Q ss_pred             -CcccCCHHHHhccCCCeEEEeccCCC---cccChHhhcCC
Q psy4626         142 -NKNVVTREHMDKMKNGCVVCNMGHSN---TEIDVNSLRTP  178 (542)
Q Consensus       142 -~~~lI~~e~l~~mk~GailvnvG~g~---~eid~~aL~~~  178 (542)
                       |.++++++.|+.||+|+++||+|||.   .+..+++|+++
T Consensus       184 ~T~~li~~~~l~~mk~gailIN~aRG~vVDe~AL~~aL~~g  224 (378)
T PRK15438        184 KTLHLADEKLIRSLKPGAILINACRGAVVDNTALLTCLNEG  224 (378)
T ss_pred             ccccccCHHHHhcCCCCcEEEECCCchhcCHHHHHHHHHhC
Confidence             78999999999999999999999995   34445666654

>KOG0069|consensus

Probab=99.49  E-value=4.8e-13  Score=138.90  Aligned_cols=165  Identities=24%  Similarity=0.350  Sum_probs=121.6

Q ss_pred             ceecccHHhhhcccccceeecCchhhhHHHH-----------hHHHHHHHHHHHHH-----hhcCccccCcEEEEEcCCh
Q psy4626          24 GCTHINAQTAAGKLTVPAMNVNDSVTKTKFD-----------NLYMCRESIIDSLK-----RSTDVMFGGKQVVLCGYGE   87 (542)
Q Consensus        24 ~~lh~~~~tA~~~L~~PV~~vn~s~~K~~fd-----------~~~g~~~s~~~ai~-----r~~~~~l~GktVvViG~G~   87 (542)
                      |+.|++.+.++ .-.+.|.++.++.+....|           +.++..+-+..+-+     ...+..+.||||+|+|+|.
T Consensus        94 G~D~vDl~a~~-krgI~V~nvp~~~~~~vAd~~~~lil~~~R~~~~g~~~~~~g~w~~~~~~~~g~~~~gK~vgilG~G~  172 (336)
T KOG0069|consen   94 GYDHVDLEAAR-KRGIRVANVPDVLTDDVADLAVSLLLALLRRFSEGNEMVRNGGWGWAGGWPLGYDLEGKTVGILGLGR  172 (336)
T ss_pred             ccchhhHHHHH-hcCceEeccCCcchHHHHHHHHHHHHHHHhhhhhhhhhhhcCCccccCCccccccccCCEEEEecCcH
Confidence            78899999886 5567788888765443322           22222221111100     1123467899999999999


Q ss_pred             hHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCCcEEEEcC----CCcccCCHHHHhccCCCeEEEec
Q psy4626          88 VGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTAT----GNKNVVTREHMDKMKNGCVVCNM  163 (542)
Q Consensus        88 IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~aDvVi~at----G~~~lI~~e~l~~mk~Gailvnv  163 (542)
                      ||+.+|++|++||+.+.++.+.+.+...+...+....++++.+..+|+|+.|.    -|.+++|++.|+.||+|++++|+
T Consensus       173 IG~~ia~rL~~Fg~~i~y~~r~~~~~~~~~~~~~~~~d~~~~~~~sD~ivv~~pLt~~T~~liNk~~~~~mk~g~vlVN~  252 (336)
T KOG0069|consen  173 IGKAIAKRLKPFGCVILYHSRTQLPPEEAYEYYAEFVDIEELLANSDVIVVNCPLTKETRHLINKKFIEKMKDGAVLVNT  252 (336)
T ss_pred             HHHHHHHhhhhccceeeeecccCCchhhHHHhcccccCHHHHHhhCCEEEEecCCCHHHHHHhhHHHHHhcCCCeEEEec
Confidence            99999999999997777777777777666666667889999999999999954    37899999999999999999999


Q ss_pred             cCCC---cccChHhhcCCC-----cceeeeccce
Q psy4626         164 GHSN---TEIDVNSLRTPD-----LTWEKVRSQV  189 (542)
Q Consensus       164 G~g~---~eid~~aL~~~~-----l~v~~~~~~v  189 (542)
                      |||.   .+...++|..+.     +++.+..|.+
T Consensus       253 aRG~iide~~l~eaL~sG~i~~aGlDVf~~EP~~  286 (336)
T KOG0069|consen  253 ARGAIIDEEALVEALKSGKIAGAGLDVFEPEPPV  286 (336)
T ss_pred             cccccccHHHHHHHHhcCCcccccccccCCCCCC
Confidence            9995   456677887653     5666665543

>PRK00257 erythronate-4-phosphate dehydrogenase; Validated

Probab=99.48  E-value=1.2e-13  Score=146.72  Aligned_cols=106  Identities=15%  Similarity=0.265  Sum_probs=84.8

Q ss_pred             hhcCccccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCCcEEEEcC--------
Q psy4626          69 RSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTAT--------  140 (542)
Q Consensus        69 r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~aDvVi~at--------  140 (542)
                      |..+..+.|+||+|+|+|.||+.+|++|+++|++|+++|+.  +..  ...+....++++++++||+|+.++        
T Consensus       108 r~~g~~l~gktvGIIG~G~IG~~va~~l~a~G~~V~~~Dp~--~~~--~~~~~~~~~l~ell~~aDiV~lh~Plt~~g~~  183 (381)
T PRK00257        108 EREGVDLAERTYGVVGAGHVGGRLVRVLRGLGWKVLVCDPP--RQE--AEGDGDFVSLERILEECDVISLHTPLTKEGEH  183 (381)
T ss_pred             cccCCCcCcCEEEEECCCHHHHHHHHHHHHCCCEEEEECCc--ccc--cccCccccCHHHHHhhCCEEEEeCcCCCCccc
Confidence            33456789999999999999999999999999999999853  221  122345678999999999999853        


Q ss_pred             CCcccCCHHHHhccCCCeEEEeccCCC---cccChHhhcCC
Q psy4626         141 GNKNVVTREHMDKMKNGCVVCNMGHSN---TEIDVNSLRTP  178 (542)
Q Consensus       141 G~~~lI~~e~l~~mk~GailvnvG~g~---~eid~~aL~~~  178 (542)
                      .|.++++.+.|+.||+|+++||+|||.   .+..+.+|..+
T Consensus       184 ~T~~li~~~~l~~mk~gailIN~aRG~vVde~AL~~aL~~g  224 (381)
T PRK00257        184 PTRHLLDEAFLASLRPGAWLINASRGAVVDNQALREALLSG  224 (381)
T ss_pred             cccccCCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHhC
Confidence            267999999999999999999999996   33344566554

>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=99.48  E-value=4.8e-13  Score=148.11  Aligned_cols=107  Identities=21%  Similarity=0.318  Sum_probs=88.7

Q ss_pred             CccccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCCcEEEEcC----CCcccCC
Q psy4626          72 DVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTAT----GNKNVVT  147 (542)
Q Consensus        72 ~~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~aDvVi~at----G~~~lI~  147 (542)
                      +..+.|++++|+|+|.||+.+|++|++||++|+++|+.+.. ..+...|+...+++++++.+|+|+.+.    .+.++++
T Consensus       135 g~~l~gktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~-~~~~~~g~~~~~l~ell~~aDiV~l~lP~t~~t~~li~  213 (526)
T PRK13581        135 GVELYGKTLGIIGLGRIGSEVAKRAKAFGMKVIAYDPYISP-ERAAQLGVELVSLDELLARADFITLHTPLTPETRGLIG  213 (526)
T ss_pred             ccccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCh-hHHHhcCCEEEcHHHHHhhCCEEEEccCCChHhhcCcC
Confidence            35689999999999999999999999999999999975432 223456777779999999999999964    3779999


Q ss_pred             HHHHhccCCCeEEEeccCCC---cccChHhhcCCC
Q psy4626         148 REHMDKMKNGCVVCNMGHSN---TEIDVNSLRTPD  179 (542)
Q Consensus       148 ~e~l~~mk~GailvnvG~g~---~eid~~aL~~~~  179 (542)
                      ++.|++||+|++++|+|||.   .+..+++|..+.
T Consensus       214 ~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~  248 (526)
T PRK13581        214 AEELAKMKPGVRIINCARGGIIDEAALAEALKSGK  248 (526)
T ss_pred             HHHHhcCCCCeEEEECCCCceeCHHHHHHHHhcCC
Confidence            99999999999999999995   344456777654

>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional

Probab=99.40  E-value=1.7e-12  Score=134.99  Aligned_cols=106  Identities=10%  Similarity=0.119  Sum_probs=84.0

Q ss_pred             ccccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCCcEEEEcC----CCcccCCH
Q psy4626          73 VMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTAT----GNKNVVTR  148 (542)
Q Consensus        73 ~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~aDvVi~at----G~~~lI~~  148 (542)
                      ..+.|+||+|+|+|.||+.+|+.|++||++|+++++.+........ -....+++++++++|+|+.+.    .+.++++.
T Consensus       132 ~~l~g~tvgIvG~G~IG~~vA~~l~afG~~V~~~~~~~~~~~~~~~-~~~~~~l~e~l~~aDvvv~~lPlt~~T~~li~~  210 (312)
T PRK15469        132 YHREDFTIGILGAGVLGSKVAQSLQTWGFPLRCWSRSRKSWPGVQS-FAGREELSAFLSQTRVLINLLPNTPETVGIINQ  210 (312)
T ss_pred             CCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCCCCcee-ecccccHHHHHhcCCEEEECCCCCHHHHHHhHH
Confidence            4678999999999999999999999999999999976533211111 112357889999999999964    37789999


Q ss_pred             HHHhccCCCeEEEeccCCC---cccChHhhcCCC
Q psy4626         149 EHMDKMKNGCVVCNMGHSN---TEIDVNSLRTPD  179 (542)
Q Consensus       149 e~l~~mk~GailvnvG~g~---~eid~~aL~~~~  179 (542)
                      +.|++||+|+++||+|||.   .+..+.+|..+.
T Consensus       211 ~~l~~mk~ga~lIN~aRG~vVde~aL~~aL~~g~  244 (312)
T PRK15469        211 QLLEQLPDGAYLLNLARGVHVVEDDLLAALDSGK  244 (312)
T ss_pred             HHHhcCCCCcEEEECCCccccCHHHHHHHHhcCC
Confidence            9999999999999999995   344456777654

>PRK06436 glycerate dehydrogenase; Provisional

Probab=99.29  E-value=8e-12  Score=129.39  Aligned_cols=100  Identities=19%  Similarity=0.386  Sum_probs=82.4

Q ss_pred             ccccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce--eeCHHHHhcCCcEEEEcC----CCcccC
Q psy4626          73 VMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS--VVKLNEVIRTVDIVVTAT----GNKNVV  146 (542)
Q Consensus        73 ~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~--v~~l~e~l~~aDvVi~at----G~~~lI  146 (542)
                      ..+.|++|+|+|+|.||+.+|+.+++||++|+++|+++..      .|..  ..+++++++++|+|+.+.    .+.+++
T Consensus       118 ~~L~gktvgIiG~G~IG~~vA~~l~afG~~V~~~~r~~~~------~~~~~~~~~l~ell~~aDiv~~~lp~t~~T~~li  191 (303)
T PRK06436        118 KLLYNKSLGILGYGGIGRRVALLAKAFGMNIYAYTRSYVN------DGISSIYMEPEDIMKKSDFVLISLPLTDETRGMI  191 (303)
T ss_pred             CCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcc------cCcccccCCHHHHHhhCCEEEECCCCCchhhcCc
Confidence            5789999999999999999999999999999999976432      2221  457899999999999954    478899


Q ss_pred             CHHHHhccCCCeEEEeccCCC---cccChHhhcCC
Q psy4626         147 TREHMDKMKNGCVVCNMGHSN---TEIDVNSLRTP  178 (542)
Q Consensus       147 ~~e~l~~mk~GailvnvG~g~---~eid~~aL~~~  178 (542)
                      +++.|+.||+|+++||+|||.   .+....+|.++
T Consensus       192 ~~~~l~~mk~ga~lIN~sRG~~vd~~aL~~aL~~g  226 (303)
T PRK06436        192 NSKMLSLFRKGLAIINVARADVVDKNDMLNFLRNH  226 (303)
T ss_pred             CHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcC
Confidence            999999999999999999996   23334566654

>PRK12480 D-lactate dehydrogenase; Provisional

Probab=99.29  E-value=2.9e-11  Score=126.68  Aligned_cols=152  Identities=16%  Similarity=0.170  Sum_probs=103.8

Q ss_pred             ceecccHHhhhcccccceeecCchhhhHHHHhHHHH-----------HHHHHHHH--H-h-hcCccccCcEEEEEcCChh
Q psy4626          24 GCTHINAQTAAGKLTVPAMNVNDSVTKTKFDNLYMC-----------RESIIDSL--K-R-STDVMFGGKQVVLCGYGEV   88 (542)
Q Consensus        24 ~~lh~~~~tA~~~L~~PV~~vn~s~~K~~fd~~~g~-----------~~s~~~ai--~-r-~~~~~l~GktVvViG~G~I   88 (542)
                      |..|++.+.+. ...++|.++.+.......+...+.           .+.+..+-  + + ..+..+.|++|+|+|+|.|
T Consensus        79 G~d~id~~~~~-~~gI~v~n~~~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~~~~~w~~~~~~~~l~g~~VgIIG~G~I  157 (330)
T PRK12480         79 GFDMYDLDLAK-KHNIVISNVPSYSPETIAEYSVSIALQLVRRFPDIERRVQAHDFTWQAEIMSKPVKNMTVAIIGTGRI  157 (330)
T ss_pred             ccchhhHHHHH-HCCCEEEeCCCCChHHHHHHHHHHHHHHHHhHHHHHHHHHhCCcccccccCccccCCCEEEEECCCHH
Confidence            56677777664 457778887663322221111111           11111110  0 1 1234689999999999999


Q ss_pred             HHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCCcEEEEcCC----CcccCCHHHHhccCCCeEEEecc
Q psy4626          89 GKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATG----NKNVVTREHMDKMKNGCVVCNMG  164 (542)
Q Consensus        89 G~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~aDvVi~atG----~~~lI~~e~l~~mk~GailvnvG  164 (542)
                      |+.+|+.|+++|++|+++|+++.......   ....+++++++++|+|+.+..    +.++++++.|+.||+|+++||+|
T Consensus       158 G~~vA~~L~~~G~~V~~~d~~~~~~~~~~---~~~~~l~ell~~aDiVil~lP~t~~t~~li~~~~l~~mk~gavlIN~a  234 (330)
T PRK12480        158 GAATAKIYAGFGATITAYDAYPNKDLDFL---TYKDSVKEAIKDADIISLHVPANKESYHLFDKAMFDHVKKGAILVNAA  234 (330)
T ss_pred             HHHHHHHHHhCCCEEEEEeCChhHhhhhh---hccCCHHHHHhcCCEEEEeCCCcHHHHHHHhHHHHhcCCCCcEEEEcC
Confidence            99999999999999999998875432111   123478899999999999653    45788889999999999999999


Q ss_pred             CCC---cccChHhhcCCC
Q psy4626         165 HSN---TEIDVNSLRTPD  179 (542)
Q Consensus       165 ~g~---~eid~~aL~~~~  179 (542)
                      ||.   .+..+.+|..+.
T Consensus       235 RG~~vd~~aL~~aL~~g~  252 (330)
T PRK12480        235 RGAVINTPDLIAAVNDGT  252 (330)
T ss_pred             CccccCHHHHHHHHHcCC
Confidence            995   344456777654

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=99.25  E-value=5.2e-11  Score=122.51  Aligned_cols=162  Identities=17%  Similarity=0.226  Sum_probs=115.8

Q ss_pred             CCCCCCceeeceecccHHhhhcccccceeecCchhhhHHHHhHHHHHHHHHHHHHhhcCccccCcEEEEEcCChhHHHHH
Q psy4626          14 DKPLKNARIVGCTHINAQTAAGKLTVPAMNVNDSVTKTKFDNLYMCRESIIDSLKRSTDVMFGGKQVVLCGYGEVGKGCC   93 (542)
Q Consensus        14 ~~pl~G~~i~~~lh~~~~tA~~~L~~PV~~vn~s~~K~~fd~~~g~~~s~~~ai~r~~~~~l~GktVvViG~G~IG~~vA   93 (542)
                      .-|....-.+|+.+.+.+.+.....++|+..-+.- .....|...+.+..+....+..+..+.|++++|+|+|.||+.+|
T Consensus        89 ~~~~~~~~~~G~~~~~l~~~a~~~gi~v~~~~~~~-~va~~n~~~~Ae~ai~~al~~~~~~l~gk~v~IiG~G~iG~avA  167 (287)
T TIGR02853        89 STKGHCTIYVGISNPYLEQLAADAGVKLIELFERD-DVAIYNSIPTAEGAIMMAIEHTDFTIHGSNVMVLGFGRTGMTIA  167 (287)
T ss_pred             hcCCCCEEEEecCCHHHHHHHHHCCCeEEEEEecc-ceEEEccHhHHHHHHHHHHHhcCCCCCCCEEEEEcChHHHHHHH
Confidence            33455666778888888755545667777322210 00001222344444433333345678999999999999999999


Q ss_pred             HHHHhCCCEEEEEeCCchhhhhhhcCCceeeC---HHHHhcCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCCCccc
Q psy4626          94 QSLKGLGCVIYITEIDPICALQACMDGFSVVK---LNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEI  170 (542)
Q Consensus        94 ~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~---l~e~l~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g~~ei  170 (542)
                      +.|+++|++|+++++++.+...+...|+...+   +.+.++++|+||.|+.. .+++++.++.|+++++++|++..+...
T Consensus       168 ~~L~~~G~~V~v~~R~~~~~~~~~~~g~~~~~~~~l~~~l~~aDiVint~P~-~ii~~~~l~~~k~~aliIDlas~Pg~t  246 (287)
T TIGR02853       168 RTFSALGARVFVGARSSADLARITEMGLIPFPLNKLEEKVAEIDIVINTIPA-LVLTADVLSKLPKHAVIIDLASKPGGT  246 (287)
T ss_pred             HHHHHCCCEEEEEeCCHHHHHHHHHCCCeeecHHHHHHHhccCCEEEECCCh-HHhCHHHHhcCCCCeEEEEeCcCCCCC
Confidence            99999999999999998776666566766543   45678899999998754 467888999999999999999988777


Q ss_pred             ChHhhcC
Q psy4626         171 DVNSLRT  177 (542)
Q Consensus       171 d~~aL~~  177 (542)
                      |+...++
T Consensus       247 df~~Ak~  253 (287)
T TIGR02853       247 DFEYAKK  253 (287)
T ss_pred             CHHHHHH
Confidence            7766654

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PRK08605 D-lactate dehydrogenase; Validated

Probab=99.19  E-value=1.7e-10  Score=120.90  Aligned_cols=105  Identities=18%  Similarity=0.246  Sum_probs=83.1

Q ss_pred             CccccCcEEEEEcCChhHHHHHHHH-HhCCCEEEEEeCCchhhhhhhcCCce-eeCHHHHhcCCcEEEEcCC----Cccc
Q psy4626          72 DVMFGGKQVVLCGYGEVGKGCCQSL-KGLGCVIYITEIDPICALQACMDGFS-VVKLNEVIRTVDIVVTATG----NKNV  145 (542)
Q Consensus        72 ~~~l~GktVvViG~G~IG~~vA~~l-~~~Ga~Viv~d~dp~r~~~A~~~G~~-v~~l~e~l~~aDvVi~atG----~~~l  145 (542)
                      +..+.|++|+|+|+|.||+.+|+.| +++|++|+++|+++.....   .++. ..+++++++++|+|+.++.    +.++
T Consensus       141 ~~~l~g~~VgIIG~G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~---~~~~~~~~l~ell~~aDvIvl~lP~t~~t~~l  217 (332)
T PRK08605        141 SRSIKDLKVAVIGTGRIGLAVAKIFAKGYGSDVVAYDPFPNAKAA---TYVDYKDTIEEAVEGADIVTLHMPATKYNHYL  217 (332)
T ss_pred             cceeCCCEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCccHhHH---hhccccCCHHHHHHhCCEEEEeCCCCcchhhh
Confidence            3468999999999999999999999 7899999999987654321   1233 3478999999999999643    6778


Q ss_pred             CCHHHHhccCCCeEEEeccCCC---cccChHhhcCCC
Q psy4626         146 VTREHMDKMKNGCVVCNMGHSN---TEIDVNSLRTPD  179 (542)
Q Consensus       146 I~~e~l~~mk~GailvnvG~g~---~eid~~aL~~~~  179 (542)
                      ++.+.++.||+|++++|++||.   .+....+|..+.
T Consensus       218 i~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~  254 (332)
T PRK08605        218 FNADLFKHFKKGAVFVNCARGSLVDTKALLDALDNGL  254 (332)
T ss_pred             cCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhCC
Confidence            8888899999999999999995   233345666553

>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]

Probab=99.18  E-value=2.3e-10  Score=119.50  Aligned_cols=189  Identities=17%  Similarity=0.257  Sum_probs=125.8

Q ss_pred             HHHhcCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCCCcccChHhhcCCCcceeeeccceeeEecCCCCEEEEecCC
Q psy4626         127 NEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIVLLAEG  206 (542)
Q Consensus       127 ~e~l~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g~~eid~~aL~~~~l~v~~~~~~v~~y~~~dg~~I~LLa~G  206 (542)
                      .+.++++|+++. ..+  -++++.++.+++-..+...|.|-+.+|+++...+++-+.....         +         
T Consensus        40 ~~~~~~~d~~~~-~~~--~v~~~~l~~~~~Lk~I~~~g~Gvd~id~~~~~~~gi~V~nap~---------~---------   98 (324)
T COG0111          40 LEALADADALIV-SVT--PVTEEVLAAAPNLKAIGRAGAGVDNIDLEAATKRGILVVNAPG---------G---------   98 (324)
T ss_pred             HhhcccCcEEEE-ecC--CCCHHHHhhCCCceEEEEccccccccCHHHHhhcCCEEEeCCC---------c---------
Confidence            456789998887 333  4677899999999999999999888998877754433332210         0         


Q ss_pred             CcccccCCCChh--HHHh--hHHHHHHHHHHHHhcCCCCCCCCccccCChhhHHHHHHhcCCcccc----ccccccHHHH
Q psy4626         207 RLVNLSCSSLPS--FVVS--ITACTQALALIELFNAPSGRYKSDVYLLPKKMDEYVASLHLPTFDA----HLTELSDEQA  278 (542)
Q Consensus       207 rLvnl~~~thp~--~vmd--~sfa~q~la~~~L~~~~~~~~~~gv~~lp~~~d~~VA~l~L~~lg~----~i~~lt~~~a  278 (542)
                         |    +.++  .++.  ++++.++.....-.+ . ++|...  ..+.      .++..+++|+    .|++..++++
T Consensus        99 ---n----a~~vAE~~~~~~L~~~R~~~~~~~~~~-~-g~W~~~--~~~g------~el~gkTvGIiG~G~IG~~va~~l  161 (324)
T COG0111          99 ---N----AISVAELVLALLLALARRIPDADASQR-R-GEWDRK--AFRG------TELAGKTVGIIGLGRIGRAVAKRL  161 (324)
T ss_pred             ---c----hHHHHHHHHHHHHHHhcCchhhHHHHH-c-CCcccc--cccc------ccccCCEEEEECCCHHHHHHHHHH
Confidence               0    0011  1111  111111111111111 1 466651  0000      1556788888    9999999999


Q ss_pred             hhcCCCC--CCCCCC--CccccCCeeeeehhhhcccCcEEEE----ccCCCCccCHhHHhcCCCCcEEEccCCCCccccc
Q psy4626         279 KYMGLNK--AGPFKP--SYYSMDGFSVVKLNEVIRTVDIVVT----ATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDV  350 (542)
Q Consensus       279 ~~lg~~e--~~p~~a--~ea~mdG~~v~~~~~a~~~~d~~~t----~tg~~~vi~~~~~~~mk~gail~n~gh~~~Ei~~  350 (542)
                      +++|+..  .||+..  .+....++.+.++++.+++||||++    +.-|+++|+.+.|++||+||||+|++|+.+ ||-
T Consensus       162 ~afgm~v~~~d~~~~~~~~~~~~~~~~~~Ld~lL~~sDiv~lh~PlT~eT~g~i~~~~~a~MK~gailIN~aRG~v-Vde  240 (324)
T COG0111         162 KAFGMKVIGYDPYSPRERAGVDGVVGVDSLDELLAEADILTLHLPLTPETRGLINAEELAKMKPGAILINAARGGV-VDE  240 (324)
T ss_pred             HhCCCeEEEECCCCchhhhccccceecccHHHHHhhCCEEEEcCCCCcchhcccCHHHHhhCCCCeEEEECCCcce-ecH
Confidence            9999953  357433  3444556667779999999999999    888999999999999999999999999987 343


Q ss_pred             cccc
Q psy4626         351 NSLR  354 (542)
Q Consensus       351 ~~l~  354 (542)
                      ++|-
T Consensus       241 ~aL~  244 (324)
T COG0111         241 DALL  244 (324)
T ss_pred             HHHH
Confidence            3343

>PRK08410 2-hydroxyacid dehydrogenase; Provisional

Probab=99.17  E-value=4.1e-10  Score=117.14  Aligned_cols=197  Identities=14%  Similarity=0.298  Sum_probs=129.8

Q ss_pred             HHhcCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCCCcccChHhhcCCCcceeeeccceeeEecCCCCEEEEecCCC
Q psy4626         128 EVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIVLLAEGR  207 (542)
Q Consensus       128 e~l~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g~~eid~~aL~~~~l~v~~~~~~v~~y~~~dg~~I~LLa~Gr  207 (542)
                      +.++++|+++..  . .-++++.++.+++-..+...|.|-+.+|++++.++++.+..+.....       .   -+    
T Consensus        38 ~~~~~~d~ii~~--~-~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~g~~~-------~---~V----  100 (311)
T PRK08410         38 ERIKDANIIITN--K-VVIDKEVLSQLPNLKLICITATGTNNVDIEYAKKKGIAVKNVAGYST-------E---SV----  100 (311)
T ss_pred             HHhCCCCEEEEC--C-CCCCHHHHhhCCCCeEEEEcccccccccHHHHHhCCCEEEcCCCCCC-------h---HH----
Confidence            446789988753  2 24677889999888888899999888999988866555543321000       0   00    


Q ss_pred             cccccCCCChhHHHhhHHHHHHHHHHHHhcCCCCCCCCccccCChhhHHHHHHhcCCcccc----ccccccHHHHhhcCC
Q psy4626         208 LVNLSCSSLPSFVVSITACTQALALIELFNAPSGRYKSDVYLLPKKMDEYVASLHLPTFDA----HLTELSDEQAKYMGL  283 (542)
Q Consensus       208 Lvnl~~~thp~~vmd~sfa~q~la~~~L~~~~~~~~~~gv~~lp~~~d~~VA~l~L~~lg~----~i~~lt~~~a~~lg~  283 (542)
                             ..-...|-++++.++.......++  ++|...-..  .......-++..+++|+    +|++..+++++++|+
T Consensus       101 -------AE~a~~l~L~~~R~~~~~~~~~~~--g~w~~~~~~--~~~~~~~~~L~gktvGIiG~G~IG~~vA~~~~~fgm  169 (311)
T PRK08410        101 -------AQHTFAMLLSLLGRINYYDRYVKS--GEYSESPIF--THISRPLGEIKGKKWGIIGLGTIGKRVAKIAQAFGA  169 (311)
T ss_pred             -------HHHHHHHHHHHHhCHHHHHHHHHc--CCCCcCCCc--cccCccccccCCCEEEEECCCHHHHHHHHHHhhcCC
Confidence                   000111123333333333333333  466532110  00000112567788888    999999999999999


Q ss_pred             CCC--CCCCCCccccCCeeeeehhhhcccCcEEEE----ccCCCCccCHhHHhcCCCCcEEEccCCCCcccccccccC
Q psy4626         284 NKA--GPFKPSYYSMDGFSVVKLNEVIRTVDIVVT----ATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRT  355 (542)
Q Consensus       284 ~e~--~p~~a~ea~mdG~~v~~~~~a~~~~d~~~t----~tg~~~vi~~~~~~~mk~gail~n~gh~~~Ei~~~~l~~  355 (542)
                      ...  ||....+  ..||+..+++|++++||+|+.    +..|+++|+.+.|++||+||+|+|+||+.+ ||-++|-+
T Consensus       170 ~V~~~d~~~~~~--~~~~~~~~l~ell~~sDvv~lh~Plt~~T~~li~~~~~~~Mk~~a~lIN~aRG~v-VDe~AL~~  244 (311)
T PRK08410        170 KVVYYSTSGKNK--NEEYERVSLEELLKTSDIISIHAPLNEKTKNLIAYKELKLLKDGAILINVGRGGI-VNEKDLAK  244 (311)
T ss_pred             EEEEECCCcccc--ccCceeecHHHHhhcCCEEEEeCCCCchhhcccCHHHHHhCCCCeEEEECCCccc-cCHHHHHH
Confidence            533  5653322  357888899999999999999    778999999999999999999999999987 36555543

>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]

Probab=99.16  E-value=1.1e-10  Score=121.95  Aligned_cols=224  Identities=16%  Similarity=0.168  Sum_probs=144.1

Q ss_pred             EEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCCcEEEEcCCCcccCCHHHHhccCCCeEEE
Q psy4626          82 LCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVC  161 (542)
Q Consensus        82 ViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~aDvVi~atG~~~lI~~e~l~~mk~Gailv  161 (542)
                      |+-..++-..+.+.+... .++..++.+..         ... .+.+.++++|.++...  ..-++++.++.+++-..++
T Consensus         5 ~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~---------~~~-~~~~~~~~~~~i~~~~--~~~i~~~~l~~~p~LKlIa   71 (324)
T COG1052           5 VLSTRKLPPEVLERLKEK-FEVERYEDDLT---------PDT-ELAERLKDADAVITFV--NDRIDAEVLEKLPGLKLIA   71 (324)
T ss_pred             EEecCcCCHHHHHHhhcc-EEEEEeccCCc---------cch-HHHHHhcCCcEEEEcC--CCCcCHHHHHhCCCcEEEE
Confidence            444555555555555544 44555442210         001 3345678999998875  2357788999997777888


Q ss_pred             eccCCCcccChHhhcCCCcceeeeccceeeEecCCCCEEEEecCCCcccccCCCChhHHHhhHHHH------HHHHHHHH
Q psy4626         162 NMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIVLLAEGRLVNLSCSSLPSFVVSITACT------QALALIEL  235 (542)
Q Consensus       162 nvG~g~~eid~~aL~~~~l~v~~~~~~v~~y~~~dg~~I~LLa~GrLvnl~~~thp~~vmd~sfa~------q~la~~~L  235 (542)
                      +.|.|-+.+|+++...+++.+..+....                           |.-+-+..+++      .+....+.
T Consensus        72 ~~~~G~D~vDl~aa~~~gI~Vtnvp~~~---------------------------t~sVAe~~~aLiLa~~R~~~~~~~~  124 (324)
T COG1052          72 TRSAGYDNVDLEAAKERGITVTNVPGYS---------------------------TEAVAEHAVALILALARRIHEGDRR  124 (324)
T ss_pred             EeccccCcccHHHHHHCCcEEEeCCCCC---------------------------chHHHHHHHHHHHHHhhchHHHHHH
Confidence            9999999999999998777666543110                           11111222222      22222222


Q ss_pred             hcCCCCCCCCcc--ccCChhhHHHHHHhcCCcccc----ccccccHHHHhhcCCCCC--CCCC--CCccccCCeeeeehh
Q psy4626         236 FNAPSGRYKSDV--YLLPKKMDEYVASLHLPTFDA----HLTELSDEQAKYMGLNKA--GPFK--PSYYSMDGFSVVKLN  305 (542)
Q Consensus       236 ~~~~~~~~~~gv--~~lp~~~d~~VA~l~L~~lg~----~i~~lt~~~a~~lg~~e~--~p~~--a~ea~mdG~~v~~~~  305 (542)
                      .+.  ++|...-  ..++..      .++.+++|+    +|++..+++++++||...  ||.+  ..|+ --+++-.+++
T Consensus       125 ~r~--g~w~~~~~~~~~~~~------~l~gktvGIiG~GrIG~avA~r~~~Fgm~v~y~~~~~~~~~~~-~~~~~y~~l~  195 (324)
T COG1052         125 VRE--GNWSLSGGPDPLLGF------DLRGKTLGIIGLGRIGQAVARRLKGFGMKVLYYDRSPNPEAEK-ELGARYVDLD  195 (324)
T ss_pred             Hhc--CcccccCCccccccc------CCCCCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCCChHHHh-hcCceeccHH
Confidence            222  4554421  111111      467788888    999999999999999533  3333  2334 2335555699


Q ss_pred             hhcccCcEEEE----ccCCCCccCHhHHhcCCCCcEEEccCCCCcccccccccC
Q psy4626         306 EVIRTVDIVVT----ATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRT  355 (542)
Q Consensus       306 ~a~~~~d~~~t----~tg~~~vi~~~~~~~mk~gail~n~gh~~~Ei~~~~l~~  355 (542)
                      |++++|||++.    +-.|+++|+.+.|++||+|++|+|+||+.+ ||-++|-+
T Consensus       196 ell~~sDii~l~~Plt~~T~hLin~~~l~~mk~ga~lVNtaRG~~-VDe~ALi~  248 (324)
T COG1052         196 ELLAESDIISLHCPLTPETRHLINAEELAKMKPGAILVNTARGGL-VDEQALID  248 (324)
T ss_pred             HHHHhCCEEEEeCCCChHHhhhcCHHHHHhCCCCeEEEECCCccc-cCHHHHHH
Confidence            99999999999    677999999999999999999999999987 45444443

>KOG0024|consensus

Probab=99.06  E-value=2.8e-10  Score=116.67  Aligned_cols=146  Identities=17%  Similarity=0.223  Sum_probs=111.8

Q ss_pred             HHHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCCC-EEEEEeCCchhhhhhhcCCceeeC-------HHH---Hh-
Q psy4626          63 IIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMDGFSVVK-------LNE---VI-  130 (542)
Q Consensus        63 ~~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga-~Viv~d~dp~r~~~A~~~G~~v~~-------l~e---~l-  130 (542)
                      .|||.+|+.  .-.|.+|+|+|+||||......++++|| +|+++|.++.|+..|++.|++++.       +++   .+ 
T Consensus       158 ~~HAcr~~~--vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~~Ga~~~~~~~~~~~~~~~~~~v~  235 (354)
T KOG0024|consen  158 GVHACRRAG--VKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKKFGATVTDPSSHKSSPQELAELVE  235 (354)
T ss_pred             hhhhhhhcC--cccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHHhCCeEEeeccccccHHHHHHHHH
Confidence            488888773  4679999999999999999999999999 999999999999999999998643       222   11 


Q ss_pred             -----cCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCCCcccChH--hhcCCCcceeeeccceeeEecCC-CCEEEE
Q psy4626         131 -----RTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVN--SLRTPDLTWEKVRSQVDHVIWPD-GKRIVL  202 (542)
Q Consensus       131 -----~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g~~eid~~--aL~~~~l~v~~~~~~v~~y~~~d-g~~I~L  202 (542)
                           ..+|+.|+|+|....++ ..+..+|.|+.++.+|-+...+.++  ....++++.+++.    +|...+ +.+|.+
T Consensus       236 ~~~g~~~~d~~~dCsG~~~~~~-aai~a~r~gGt~vlvg~g~~~~~fpi~~v~~kE~~~~g~f----ry~~~~y~~ai~l  310 (354)
T KOG0024|consen  236 KALGKKQPDVTFDCSGAEVTIR-AAIKATRSGGTVVLVGMGAEEIQFPIIDVALKEVDLRGSF----RYCNGDYPTAIEL  310 (354)
T ss_pred             hhccccCCCeEEEccCchHHHH-HHHHHhccCCEEEEeccCCCccccChhhhhhheeeeeeee----eeccccHHHHHHH
Confidence                 35999999999887786 6788999999999999886554444  3345566666554    343211 467889


Q ss_pred             ecCCCcccccCCC
Q psy4626         203 LAEGRLVNLSCSS  215 (542)
Q Consensus       203 La~GrLvnl~~~t  215 (542)
                      +++|++.--...|
T Consensus       311 i~sGki~~k~lIT  323 (354)
T KOG0024|consen  311 VSSGKIDVKPLIT  323 (354)
T ss_pred             HHcCCcCchhhee
Confidence            9999886544444

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=99.01  E-value=5.6e-09  Score=107.96  Aligned_cols=100  Identities=21%  Similarity=0.360  Sum_probs=84.2

Q ss_pred             CccccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeC---HHHHhcCCcEEEEcCCCcccCCH
Q psy4626          72 DVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVK---LNEVIRTVDIVVTATGNKNVVTR  148 (542)
Q Consensus        72 ~~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~---l~e~l~~aDvVi~atG~~~lI~~  148 (542)
                      +..+.|++|+|+|+|.+|+.+++.|+.+|++|+++++++.+..++...|+....   +.+.+.++|+||+|+.. .++++
T Consensus       147 ~~~l~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~~~G~~~~~~~~l~~~l~~aDiVI~t~p~-~~i~~  225 (296)
T PRK08306        147 PITIHGSNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHLARITEMGLSPFHLSELAEEVGKIDIIFNTIPA-LVLTK  225 (296)
T ss_pred             CCCCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCeeecHHHHHHHhCCCCEEEECCCh-hhhhH
Confidence            356789999999999999999999999999999999998877777777877654   45667899999999754 46778


Q ss_pred             HHHhccCCCeEEEeccCCCcccCh
Q psy4626         149 EHMDKMKNGCVVCNMGHSNTEIDV  172 (542)
Q Consensus       149 e~l~~mk~GailvnvG~g~~eid~  172 (542)
                      +.++.|++++++++++..+...++
T Consensus       226 ~~l~~~~~g~vIIDla~~pggtd~  249 (296)
T PRK08306        226 EVLSKMPPEALIIDLASKPGGTDF  249 (296)
T ss_pred             HHHHcCCCCcEEEEEccCCCCcCe
Confidence            899999999999999976544443

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=99.01  E-value=5.5e-10  Score=117.82  Aligned_cols=138  Identities=22%  Similarity=0.280  Sum_probs=104.0

Q ss_pred             ccCcEEEEEcCChhHHHHHHHHHhCCC-EEEEEeCCchhhhhhhc-CCceee-CH-H--------HHh--cCCcEEEEcC
Q psy4626          75 FGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACM-DGFSVV-KL-N--------EVI--RTVDIVVTAT  140 (542)
Q Consensus        75 l~GktVvViG~G~IG~~vA~~l~~~Ga-~Viv~d~dp~r~~~A~~-~G~~v~-~l-~--------e~l--~~aDvVi~at  140 (542)
                      ..+.+|+|+|+||||+..++.++.+|+ +|+++|+++.|+..|+. .|.+.+ +. +        +..  .++|++|+|+
T Consensus       167 ~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~  246 (350)
T COG1063         167 RPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAV  246 (350)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECC
Confidence            345599999999999999999999998 89999999999998877 666643 22 1        111  3699999999


Q ss_pred             CCcccCCHHHHhccCCCeEEEeccCCCc---ccChHhhcCCCcceeeeccceeeEecCCCCEEEEecCCCcccccCCC
Q psy4626         141 GNKNVVTREHMDKMKNGCVVCNMGHSNT---EIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIVLLAEGRLVNLSCSS  215 (542)
Q Consensus       141 G~~~lI~~e~l~~mk~GailvnvG~g~~---eid~~aL~~~~l~v~~~~~~v~~y~~~dg~~I~LLa~GrLvnl~~~t  215 (542)
                      |+...+. +.++.+++|+.++.+|.+..   .++...+..+++++.++......+.+  .+.+.++++|++..-...+
T Consensus       247 G~~~~~~-~ai~~~r~gG~v~~vGv~~~~~~~~~~~~~~~kel~l~gs~~~~~~~~~--~~~~~ll~~g~i~~~~lit  321 (350)
T COG1063         247 GSPPALD-QALEALRPGGTVVVVGVYGGEDIPLPAGLVVSKELTLRGSLRPSGREDF--ERALDLLASGKIDPEKLIT  321 (350)
T ss_pred             CCHHHHH-HHHHHhcCCCEEEEEeccCCccCccCHHHHHhcccEEEeccCCCCcccH--HHHHHHHHcCCCChhHceE
Confidence            9887774 79999999999999998843   45666777778888776321221111  3467889999887754443

>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional

Probab=98.98  E-value=3.9e-09  Score=110.43  Aligned_cols=195  Identities=13%  Similarity=0.169  Sum_probs=127.6

Q ss_pred             HHhcCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCCCcccChHhhcCCCcceeeeccceeeEecCCCCEEEEecCCC
Q psy4626         128 EVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIVLLAEGR  207 (542)
Q Consensus       128 e~l~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g~~eid~~aL~~~~l~v~~~~~~v~~y~~~dg~~I~LLa~Gr  207 (542)
                      +.+.++|+++.-. .  -++++.++.+++-..+...|.|-+.+|++++.++++.+........          .-++   
T Consensus        41 ~~~~~ad~li~~~-~--~~~~~~l~~~p~Lk~I~~~g~G~d~id~~~~~~~gI~V~n~~~~~~----------~~VA---  104 (323)
T PRK15409         41 AAFAEAEGLLGSG-E--KVDAALLEKMPKLRAASTISVGYDNFDVDALTARKILLMHTPTVLT----------ETVA---  104 (323)
T ss_pred             HHhcCCeEEEEcC-C--CCCHHHHhhCCCCeEEEECceecccccHHHHHHCCCEEEeCCCCCc----------hHHH---
Confidence            4568899988532 2  4778889999888888899998888999988766655543321000          0000   


Q ss_pred             cccccCCCChhHHHhhHHHHHHHHHHHHhcCCCCCCCCccc-cCChhhHHHHHHhcCCcccc----ccccccHHHHh-hc
Q psy4626         208 LVNLSCSSLPSFVVSITACTQALALIELFNAPSGRYKSDVY-LLPKKMDEYVASLHLPTFDA----HLTELSDEQAK-YM  281 (542)
Q Consensus       208 Lvnl~~~thp~~vmd~sfa~q~la~~~L~~~~~~~~~~gv~-~lp~~~d~~VA~l~L~~lg~----~i~~lt~~~a~-~l  281 (542)
                              .-...+-++.+.++.......++  ++|..... ....      -++..+++|+    +|++..+++++ ++
T Consensus       105 --------E~~~~l~L~~~R~i~~~~~~~~~--g~w~~~~~~~~~g------~~L~gktvGIiG~G~IG~~va~~l~~~f  168 (323)
T PRK15409        105 --------DTLMALVLSTARRVVEVAERVKA--GEWTASIGPDWFG------TDVHHKTLGIVGMGRIGMALAQRAHFGF  168 (323)
T ss_pred             --------HHHHHHHHHHHcCHHHHHHHHHc--CCCcccCcccccc------CCCCCCEEEEEcccHHHHHHHHHHHhcC
Confidence                    00011112333333333333333  46753210 0000      1467788888    99999999998 99


Q ss_pred             CCCCC--CCCCCCcc-ccCCeeeeehhhhcccCcEEEE----ccCCCCccCHhHHhcCCCCcEEEccCCCCccccccccc
Q psy4626         282 GLNKA--GPFKPSYY-SMDGFSVVKLNEVIRTVDIVVT----ATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLR  354 (542)
Q Consensus       282 g~~e~--~p~~a~ea-~mdG~~v~~~~~a~~~~d~~~t----~tg~~~vi~~~~~~~mk~gail~n~gh~~~Ei~~~~l~  354 (542)
                      |+...  ||...-++ .-.|.+..+++|++++||+|+.    +..|+++|+.+.|++||+||+|+|+||+.+ ||-++|-
T Consensus       169 gm~V~~~~~~~~~~~~~~~~~~~~~l~ell~~sDvv~lh~plt~~T~~li~~~~l~~mk~ga~lIN~aRG~v-Vde~AL~  247 (323)
T PRK15409        169 NMPILYNARRHHKEAEERFNARYCDLDTLLQESDFVCIILPLTDETHHLFGAEQFAKMKSSAIFINAGRGPV-VDENALI  247 (323)
T ss_pred             CCEEEEECCCCchhhHHhcCcEecCHHHHHHhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECCCccc-cCHHHHH
Confidence            99533  45432221 1235566799999999999999    788999999999999999999999999987 3655554


Q ss_pred             C
Q psy4626         355 T  355 (542)
Q Consensus       355 ~  355 (542)
                      +
T Consensus       248 ~  248 (323)
T PRK15409        248 A  248 (323)
T ss_pred             H
Confidence            3

>KOG0068|consensus

Probab=98.92  E-value=4e-09  Score=108.53  Aligned_cols=225  Identities=18%  Similarity=0.278  Sum_probs=142.8

Q ss_pred             CChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCCcEEEEcCCCcccCCHHHHhccCCCeEEE-ec
Q psy4626          85 YGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVC-NM  163 (542)
Q Consensus        85 ~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~aDvVi~atG~~~lI~~e~l~~mk~Gailv-nv  163 (542)
                      +=++++.+...++..|-+|......+..            ++-+.++.+|.++.-+++  -++++.|+.-+.+-.++ -.
T Consensus        12 ~e~~~~~~~~~l~~~g~~v~~~~~~~~e------------el~~~i~~~~aviVrs~t--kvtadvl~aa~~~lkvVgra   77 (406)
T KOG0068|consen   12 AESLDQACIEILKDNGYQVEFKKNLSLE------------ELIEKIKDCDALIVRSKT--KVTADVLEAAAGGLKVVGRA   77 (406)
T ss_pred             ecccchHHHHHHHhcCceEEEeccCCHH------------HHHHHhccCCEEEEEeCC--eecHHHHHhhcCCeEEEEec
Confidence            4456666777777777766665321110            112335889999988777  47788888755554444 34


Q ss_pred             cCCCcccChHhhcCCCcceeeeccceeeEecCCCCEEEEecCCCcccccCCCChhHHHhhHHHHHHHHHHHHhcCCCCCC
Q psy4626         164 GHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIVLLAEGRLVNLSCSSLPSFVVSITACTQALALIELFNAPSGRY  243 (542)
Q Consensus       164 G~g~~eid~~aL~~~~l~v~~~~~~v~~y~~~dg~~I~LLa~GrLvnl~~~thp~~vmd~sfa~q~la~~~L~~~~~~~~  243 (542)
                      |.|-+.+|+++...+++.+..+.         ....+           +.+.+ ...+=+|++.|+-..-.-.+.  ++|
T Consensus        78 g~G~dNVDL~AAte~gi~Vvn~P---------~~Ns~-----------saAEl-tigli~SLaR~i~~A~~s~k~--g~w  134 (406)
T KOG0068|consen   78 GIGVDNVDLKAATENGILVVNTP---------TANSR-----------SAAEL-TIGLILSLARQIGQASASMKE--GKW  134 (406)
T ss_pred             ccCccccChhhHHhCCeEEEeCC---------CCChH-----------HHHHH-HHHHHHHHhhhcchhheeeec--Cce
Confidence            44457888887776555444321         10000           00000 001112333333221111111  567


Q ss_pred             CCccccCChhhHHHHHHhcCCcccc----ccccccHHHHhhcCCCCC--CCCCCC-ccccCCeeeeehhhhcccCcEEEE
Q psy4626         244 KSDVYLLPKKMDEYVASLHLPTFDA----HLTELSDEQAKYMGLNKA--GPFKPS-YYSMDGFSVVKLNEVIRTVDIVVT  316 (542)
Q Consensus       244 ~~gv~~lp~~~d~~VA~l~L~~lg~----~i~~lt~~~a~~lg~~e~--~p~~a~-ea~mdG~~v~~~~~a~~~~d~~~t  316 (542)
                      ...-+.  ..      ++..+++|+    +|+...+.+++.+|+.++  ||+... ++..-|.+.++++|+++.||++..
T Consensus       135 nr~~~~--G~------el~GKTLgvlG~GrIGseVA~r~k~~gm~vI~~dpi~~~~~~~a~gvq~vsl~Eil~~ADFitl  206 (406)
T KOG0068|consen  135 NRVKYL--GW------ELRGKTLGVLGLGRIGSEVAVRAKAMGMHVIGYDPITPMALAEAFGVQLVSLEEILPKADFITL  206 (406)
T ss_pred             eeccee--ee------EEeccEEEEeecccchHHHHHHHHhcCceEEeecCCCchHHHHhccceeeeHHHHHhhcCEEEE
Confidence            664332  11      456788887    999999999999999765  344332 233378899999999999999998


Q ss_pred             ----ccCCCCccCHhHHhcCCCCcEEEccCCCCcccccccccC
Q psy4626         317 ----ATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRT  355 (542)
Q Consensus       317 ----~tg~~~vi~~~~~~~mk~gail~n~gh~~~Ei~~~~l~~  355 (542)
                          +.-++++|+.+.|++||+|+.++|+.|+.+ ||.++|-+
T Consensus       207 H~PLtP~T~~lin~~tfA~mKkGVriIN~aRGGv-VDe~ALv~  248 (406)
T KOG0068|consen  207 HVPLTPSTEKLLNDETFAKMKKGVRIINVARGGV-VDEPALVR  248 (406)
T ss_pred             ccCCCcchhhccCHHHHHHhhCCcEEEEecCCce-echHHHHH
Confidence                788999999999999999999999999987 67666654

>PRK06487 glycerate dehydrogenase; Provisional

Probab=98.92  E-value=4.4e-09  Score=109.74  Aligned_cols=193  Identities=13%  Similarity=0.169  Sum_probs=122.8

Q ss_pred             HHHhcCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCCCcccChHhhcCCCcceeeeccceeeEecCCCCEEEEecCC
Q psy4626         127 NEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIVLLAEG  206 (542)
Q Consensus       127 ~e~l~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g~~eid~~aL~~~~l~v~~~~~~v~~y~~~dg~~I~LLa~G  206 (542)
                      .+.++++|+++... .  -++++.++.+++-..+...|.|-+.+|++++.++++.+......                  
T Consensus        40 ~~~~~~~d~~i~~~-~--~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~g~------------------   98 (317)
T PRK06487         40 AERLRGAQVAISNK-V--ALDAAALAAAPQLKLILVAATGTNNVDLAAARERGITVCNCQGY------------------   98 (317)
T ss_pred             HHHhCCCeEEEEeC-C--CCCHHHHhhCCCCeEEEEcCccccccCHHHHHHCCCEEEeCCCC------------------
Confidence            34568899887532 2  36778899998888888999888889998887655544432110                  


Q ss_pred             CcccccCCCChhH--HHhhHHHHHHHHHHHHhcCCCCCCCCccccCChhhHHHHHHhcCCcccc----ccccccHHHHhh
Q psy4626         207 RLVNLSCSSLPSF--VVSITACTQALALIELFNAPSGRYKSDVYLLPKKMDEYVASLHLPTFDA----HLTELSDEQAKY  280 (542)
Q Consensus       207 rLvnl~~~thp~~--vmd~sfa~q~la~~~L~~~~~~~~~~gv~~lp~~~d~~VA~l~L~~lg~----~i~~lt~~~a~~  280 (542)
                         | +. .....  .+-++++.++.......++  ++|......-+.  .....++..+++|+    +|++..++++++
T Consensus        99 ---~-~~-~vAE~~~~~~L~~~R~~~~~~~~~~~--g~W~~~~~~~~~--~~~~~~l~gktvgIiG~G~IG~~vA~~l~~  169 (317)
T PRK06487         99 ---G-TP-SVAQHTLALLLALATRLPDYQQAVAA--GRWQQSSQFCLL--DFPIVELEGKTLGLLGHGELGGAVARLAEA  169 (317)
T ss_pred             ---C-cc-hHHHHHHHHHHHHHcCHHHHHHHHHc--CCCccCcccccc--cCcccccCCCEEEEECCCHHHHHHHHHHhh
Confidence               0 00 00001  1112233332222222232  466532111000  00011466678887    999999999999


Q ss_pred             cCCCCC--CCCCCCccccCCeeeeehhhhcccCcEEEE----ccCCCCccCHhHHhcCCCCcEEEccCCCCccccccccc
Q psy4626         281 MGLNKA--GPFKPSYYSMDGFSVVKLNEVIRTVDIVVT----ATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLR  354 (542)
Q Consensus       281 lg~~e~--~p~~a~ea~mdG~~v~~~~~a~~~~d~~~t----~tg~~~vi~~~~~~~mk~gail~n~gh~~~Ei~~~~l~  354 (542)
                      +|+...  ||...-    ++++.++++|++++||+|+.    +..|+++|+.+.|++||+||+|+|+||+.+= |-++|-
T Consensus       170 fgm~V~~~~~~~~~----~~~~~~~l~ell~~sDiv~l~lPlt~~T~~li~~~~~~~mk~ga~lIN~aRG~vV-de~AL~  244 (317)
T PRK06487        170 FGMRVLIGQLPGRP----ARPDRLPLDELLPQVDALTLHCPLTEHTRHLIGARELALMKPGALLINTARGGLV-DEQALA  244 (317)
T ss_pred             CCCEEEEECCCCCc----ccccccCHHHHHHhCCEEEECCCCChHHhcCcCHHHHhcCCCCeEEEECCCcccc-CHHHHH
Confidence            999543  443211    22334589999999999998    7889999999999999999999999999873 544443

>PRK06932 glycerate dehydrogenase; Provisional

Probab=98.91  E-value=5.6e-09  Score=108.81  Aligned_cols=194  Identities=17%  Similarity=0.237  Sum_probs=122.4

Q ss_pred             HHhcCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCCCcccChHhhcCCCcceeeeccceeeEecCCCCEEEEecCCC
Q psy4626         128 EVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIVLLAEGR  207 (542)
Q Consensus       128 e~l~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g~~eid~~aL~~~~l~v~~~~~~v~~y~~~dg~~I~LLa~Gr  207 (542)
                      +.++++|+++.. ..  -++++.++.+++-..+...|.|-+.+|++++.++++.+..+...                   
T Consensus        40 ~~~~~~d~ii~~-~~--~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~g~-------------------   97 (314)
T PRK06932         40 ERAKDADIVITS-KV--LFTRETLAQLPKLKLIAITATGTNNVDLVAAKELGIAVKNVTGY-------------------   97 (314)
T ss_pred             HHhCCCcEEEEe-CC--CCCHHHHhhCcCCeEEEEecccccccCHHHHHhCCCEEEeCCCC-------------------
Confidence            346889988753 12  36778899998888888999888889998887655544432110                   


Q ss_pred             cccccCCCChhHHHh--hHHHHHHHHHHHHhcCCCCCCCCccccCChhhHHHHHHhcCCcccc----ccccccHHHHhhc
Q psy4626         208 LVNLSCSSLPSFVVS--ITACTQALALIELFNAPSGRYKSDVYLLPKKMDEYVASLHLPTFDA----HLTELSDEQAKYM  281 (542)
Q Consensus       208 Lvnl~~~thp~~vmd--~sfa~q~la~~~L~~~~~~~~~~gv~~lp~~~d~~VA~l~L~~lg~----~i~~lt~~~a~~l  281 (542)
                        |  .......++.  ++++.++-......++  ++|...-...+.  .....++..+++|+    +|++..+++++++
T Consensus        98 --~--~~~vAE~~i~l~l~~~R~~~~~~~~~~~--~~W~~~~~~~~~--~~~~~~l~gktvgIiG~G~IG~~va~~l~~f  169 (314)
T PRK06932         98 --S--STTVPEHVLGMIFALKHSLMGWYRDQLS--DRWATCKQFCYF--DYPITDVRGSTLGVFGKGCLGTEVGRLAQAL  169 (314)
T ss_pred             --C--hhHHHHHHHHHHHHHHhChHHHHHHHHc--CCCCcCcccccc--CCcccccCCCEEEEECCCHHHHHHHHHHhcC
Confidence              0  0000111111  2222222221222222  466542111000  00112567778887    9999999999999


Q ss_pred             CCCCC--CCCCCCccccCCeeeeehhhhcccCcEEEE----ccCCCCccCHhHHhcCCCCcEEEccCCCCcccccccccC
Q psy4626         282 GLNKA--GPFKPSYYSMDGFSVVKLNEVIRTVDIVVT----ATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRT  355 (542)
Q Consensus       282 g~~e~--~p~~a~ea~mdG~~v~~~~~a~~~~d~~~t----~tg~~~vi~~~~~~~mk~gail~n~gh~~~Ei~~~~l~~  355 (542)
                      |+...  +|....+ ...+|  .+++|++++||||+.    +..|+++|+.+.|++||+||+|+|+||+.+= |-++|-+
T Consensus       170 g~~V~~~~~~~~~~-~~~~~--~~l~ell~~sDiv~l~~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~V-de~AL~~  245 (314)
T PRK06932        170 GMKVLYAEHKGASV-CREGY--TPFEEVLKQADIVTLHCPLTETTQNLINAETLALMKPTAFLINTGRGPLV-DEQALLD  245 (314)
T ss_pred             CCEEEEECCCcccc-ccccc--CCHHHHHHhCCEEEEcCCCChHHhcccCHHHHHhCCCCeEEEECCCcccc-CHHHHHH
Confidence            99533  3432211 12344  389999999999998    7789999999999999999999999999873 6555543

>PRK13403 ketol-acid reductoisomerase; Provisional

Probab=98.91  E-value=3.7e-09  Score=109.65  Aligned_cols=94  Identities=24%  Similarity=0.352  Sum_probs=78.6

Q ss_pred             cccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCCcEEEEcC---CCcccCCHHH
Q psy4626          74 MFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTAT---GNKNVVTREH  150 (542)
Q Consensus        74 ~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~aDvVi~at---G~~~lI~~e~  150 (542)
                      .+.|++|+|||+|.||+.+|+.|+++|++|+++++.+.....+...|+.+.+++++++.||+|+.+.   .++++++.+.
T Consensus        13 ~LkgKtVGIIG~GsIG~amA~nL~d~G~~ViV~~r~~~s~~~A~~~G~~v~sl~Eaak~ADVV~llLPd~~t~~V~~~ei   92 (335)
T PRK13403         13 LLQGKTVAVIGYGSQGHAQAQNLRDSGVEVVVGVRPGKSFEVAKADGFEVMSVSEAVRTAQVVQMLLPDEQQAHVYKAEV   92 (335)
T ss_pred             hhCcCEEEEEeEcHHHHHHHHHHHHCcCEEEEEECcchhhHHHHHcCCEECCHHHHHhcCCEEEEeCCChHHHHHHHHHH
Confidence            5789999999999999999999999999999998543333446667888889999999999999965   3567887778


Q ss_pred             HhccCCCeEEEeccCCC
Q psy4626         151 MDKMKNGCVVCNMGHSN  167 (542)
Q Consensus       151 l~~mk~GailvnvG~g~  167 (542)
                      ++.||+|++++..-.++
T Consensus        93 l~~MK~GaiL~f~hgfn  109 (335)
T PRK13403         93 EENLREGQMLLFSHGFN  109 (335)
T ss_pred             HhcCCCCCEEEECCCcc
Confidence            99999999888755444

>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=98.88  E-value=1.3e-08  Score=109.69  Aligned_cols=185  Identities=14%  Similarity=0.152  Sum_probs=122.9

Q ss_pred             HHhcCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCCCcccChHhhcCCCcceeeeccceeeEecCCCCEEEEecCCC
Q psy4626         128 EVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIVLLAEGR  207 (542)
Q Consensus       128 e~l~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g~~eid~~aL~~~~l~v~~~~~~v~~y~~~dg~~I~LLa~Gr  207 (542)
                      +.++++|+++....+  .++++.++.+++-..+...|.|-+.+|++++.++++.+......                   
T Consensus        49 ~~~~~~d~l~~~~~~--~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~V~n~pg~-------------------  107 (409)
T PRK11790         49 EAIKDAHFIGIRSRT--QLTEEVLAAAEKLVAIGCFCIGTNQVDLDAAAKRGIPVFNAPFS-------------------  107 (409)
T ss_pred             HHcCCCCEEEEeCCC--CCCHHHHhhCCCCeEEEECceecccccHHHHHhCCCEEEeCCCC-------------------
Confidence            456789987654322  46778899998888888999888889999888665555433110                   


Q ss_pred             cccccCCCChhHHHh------hHHHHHHHHHHHHhcCCCCCCCCccccCChhhHHHHHHhcCCcccc----ccccccHHH
Q psy4626         208 LVNLSCSSLPSFVVS------ITACTQALALIELFNAPSGRYKSDVYLLPKKMDEYVASLHLPTFDA----HLTELSDEQ  277 (542)
Q Consensus       208 Lvnl~~~thp~~vmd------~sfa~q~la~~~L~~~~~~~~~~gv~~lp~~~d~~VA~l~L~~lg~----~i~~lt~~~  277 (542)
                              ++..+-.      ++++.++.......++  ++|.....  +.      -++..+++|+    +|++..+++
T Consensus       108 --------~~~aVAE~~i~l~L~~~R~~~~~~~~~~~--g~w~~~~~--~~------~~L~gktvGIiG~G~IG~~vA~~  169 (409)
T PRK11790        108 --------NTRSVAELVIGEIILLLRGIPEKNAKAHR--GGWNKSAA--GS------FEVRGKTLGIVGYGHIGTQLSVL  169 (409)
T ss_pred             --------ChHHHHHHHHHHHHHHHcChHHHHHHHHc--Cccccccc--Cc------ccCCCCEEEEECCCHHHHHHHHH
Confidence                    0111111      2222222222222222  46654321  00      1466788888    999999999


Q ss_pred             HhhcCCCC--CCCCCCCccccCCe-eeeehhhhcccCcEEEE----ccCCCCccCHhHHhcCCCCcEEEccCCCCccccc
Q psy4626         278 AKYMGLNK--AGPFKPSYYSMDGF-SVVKLNEVIRTVDIVVT----ATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDV  350 (542)
Q Consensus       278 a~~lg~~e--~~p~~a~ea~mdG~-~v~~~~~a~~~~d~~~t----~tg~~~vi~~~~~~~mk~gail~n~gh~~~Ei~~  350 (542)
                      ++++|+..  .||.....  ..++ .+.+++|++++||+|+.    +..|+++|+.+.|++||+||+|+|+||+.+- |-
T Consensus       170 ~~~fGm~V~~~d~~~~~~--~~~~~~~~~l~ell~~sDiVslh~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~v-de  246 (409)
T PRK11790        170 AESLGMRVYFYDIEDKLP--LGNARQVGSLEELLAQSDVVSLHVPETPSTKNMIGAEELALMKPGAILINASRGTVV-DI  246 (409)
T ss_pred             HHHCCCEEEEECCCcccc--cCCceecCCHHHHHhhCCEEEEcCCCChHHhhccCHHHHhcCCCCeEEEECCCCccc-CH
Confidence            99999953  34543221  2233 34589999999999999    6679999999999999999999999999874 55


Q ss_pred             cccc
Q psy4626         351 NSLR  354 (542)
Q Consensus       351 ~~l~  354 (542)
                      ++|-
T Consensus       247 ~aL~  250 (409)
T PRK11790        247 DALA  250 (409)
T ss_pred             HHHH
Confidence            5454

>PLN03139 formate dehydrogenase; Provisional

Probab=98.85  E-value=1.1e-08  Score=109.20  Aligned_cols=224  Identities=19%  Similarity=0.215  Sum_probs=139.1

Q ss_pred             HHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCCCcc
Q psy4626          90 KGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTE  169 (542)
Q Consensus        90 ~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g~~e  169 (542)
                      .++-..+...|.++++++..+         + ....+.+.++++|++|.....+.-++++.++.+++-..+...|.|-+.
T Consensus        65 ~~~~~~l~~~g~~~v~~~~~~---------~-~~~~~~~~l~dadili~~~~~~~~~~~e~l~~ap~LK~I~~~g~G~D~  134 (386)
T PLN03139         65 LGIRDWLESQGHQYIVTDDKE---------G-PDCELEKHIPDLHVLITTPFHPAYVTAERIKKAKNLELLLTAGIGSDH  134 (386)
T ss_pred             ccHHHHHHhcCCeEEEeCCCC---------C-CHHHHHHHhCCCeEEEEcCccCCCCCHHHHhhCCCccEEEECCccccc
Confidence            355677888888887774111         0 011234567899999875433334778899999999999999999888


Q ss_pred             cChHhhcCCCcceeeeccceeeEecCCCCEEEEecCCCcccccCCCChhHH--HhhHHHHHHHHHHHHhcCCCCCCCCcc
Q psy4626         170 IDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIVLLAEGRLVNLSCSSLPSFV--VSITACTQALALIELFNAPSGRYKSDV  247 (542)
Q Consensus       170 id~~aL~~~~l~v~~~~~~v~~y~~~dg~~I~LLa~GrLvnl~~~thp~~v--md~sfa~q~la~~~L~~~~~~~~~~gv  247 (542)
                      +|++++.++++.+.++...                     |-.  .....+  +-+++..++........+  +.|...-
T Consensus       135 iDl~aa~~~gI~V~n~~g~---------------------na~--sVAE~al~liL~l~R~~~~~~~~~~~--g~W~~~~  189 (386)
T PLN03139        135 IDLPAAAAAGLTVAEVTGS---------------------NVV--SVAEDELMRILILLRNFLPGYHQVVS--GEWNVAG  189 (386)
T ss_pred             cCHHHHHHCCeEEEECCCc---------------------CcH--HHHHHHHHHHHHHHcCcHHHHHHHHh--CCCcccc
Confidence            9999887665555443210                     000  000000  011222221111111222  4564310


Q ss_pred             ccCChhhHHHHHHhcCCcccc----ccccccHHHHhhcCCC--CCCCCCCC--ccccCCeee-eehhhhcccCcEEEE--
Q psy4626         248 YLLPKKMDEYVASLHLPTFDA----HLTELSDEQAKYMGLN--KAGPFKPS--YYSMDGFSV-VKLNEVIRTVDIVVT--  316 (542)
Q Consensus       248 ~~lp~~~d~~VA~l~L~~lg~----~i~~lt~~~a~~lg~~--e~~p~~a~--ea~mdG~~v-~~~~~a~~~~d~~~t--  316 (542)
                      ...      .-.++..+++|+    .|++..+++++.+|+.  -.||.+.-  ...-.|++. .+++|+++++|+|++  
T Consensus       190 ~~~------~~~~L~gktVGIVG~G~IG~~vA~~L~afG~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~sDvV~l~l  263 (386)
T PLN03139        190 IAY------RAYDLEGKTVGTVGAGRIGRLLLQRLKPFNCNLLYHDRLKMDPELEKETGAKFEEDLDAMLPKCDVVVINT  263 (386)
T ss_pred             ccC------CCcCCCCCEEEEEeecHHHHHHHHHHHHCCCEEEEECCCCcchhhHhhcCceecCCHHHHHhhCCEEEEeC
Confidence            000      001355667776    8999999999999994  23444211  111235443 489999999999998  


Q ss_pred             --ccCCCCccCHhHHhcCCCCcEEEccCCCCcccccccccC
Q psy4626         317 --ATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRT  355 (542)
Q Consensus       317 --~tg~~~vi~~~~~~~mk~gail~n~gh~~~Ei~~~~l~~  355 (542)
                        +..++++|+.+.|+.||+|++++|+||+.+- |-++|.+
T Consensus       264 Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~iV-De~AL~~  303 (386)
T PLN03139        264 PLTEKTRGMFNKERIAKMKKGVLIVNNARGAIM-DTQAVAD  303 (386)
T ss_pred             CCCHHHHHHhCHHHHhhCCCCeEEEECCCCchh-hHHHHHH
Confidence              6678999999999999999999999999874 5555543

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=98.85  E-value=7e-09  Score=114.15  Aligned_cols=92  Identities=22%  Similarity=0.334  Sum_probs=77.6

Q ss_pred             cccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceee--CH----------------H------HH
Q psy4626          74 MFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVV--KL----------------N------EV  129 (542)
Q Consensus        74 ~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~--~l----------------~------e~  129 (542)
                      ..+|++|+|+|+|++|+..++.++.+|++|+++|+++.|+.++...|.+..  +.                +      +.
T Consensus       162 ~~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~  241 (509)
T PRK09424        162 KVPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMAL  241 (509)
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchhHHHHHHHH
Confidence            357999999999999999999999999999999999999999988898732  11                1      11


Q ss_pred             ----hcCCcEEEEcCCCc-----ccCCHHHHhccCCCeEEEeccC
Q psy4626         130 ----IRTVDIVVTATGNK-----NVVTREHMDKMKNGCVVCNMGH  165 (542)
Q Consensus       130 ----l~~aDvVi~atG~~-----~lI~~e~l~~mk~GailvnvG~  165 (542)
                          ++++|++|+|+|.+     .++.++.++.||+|++++.+|.
T Consensus       242 ~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~  286 (509)
T PRK09424        242 FAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAA  286 (509)
T ss_pred             HHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence                25799999999863     3666799999999999999986

>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional

Probab=98.84  E-value=5.3e-08  Score=103.79  Aligned_cols=172  Identities=15%  Similarity=0.197  Sum_probs=115.9

Q ss_pred             HHhcCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCCCcccChHhhcCCCcceeeeccceeeEecCCCCEEEEecCCC
Q psy4626         128 EVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIVLLAEGR  207 (542)
Q Consensus       128 e~l~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g~~eid~~aL~~~~l~v~~~~~~v~~y~~~dg~~I~LLa~Gr  207 (542)
                      +.++++|+++..+.+  -++++.++ .++=..+..++.|-+.+|.+++.++++.+.....                    
T Consensus        33 ~~l~daD~liv~s~t--~v~~~ll~-~~~Lk~I~~~~~G~D~iD~~~~~~~gI~v~napg--------------------   89 (378)
T PRK15438         33 AQLADADALMVRSVT--KVNESLLA-GKPIKFVGTATAGTDHVDEAWLKQAGIGFSAAPG--------------------   89 (378)
T ss_pred             HHhCCCcEEEEcCCC--CCCHHHhc-CCCCeEEEECcccccccCHHHHHHCCCEEEECCC--------------------
Confidence            346889998875443  36666664 4555667788888788999988765544432210                    


Q ss_pred             cccccCCCChhHHHhhHHHHHHHHHHHHhcCCCCCCCCccccCChhhHHHHHHhcCCcccc----ccccccHHHHhhcCC
Q psy4626         208 LVNLSCSSLPSFVVSITACTQALALIELFNAPSGRYKSDVYLLPKKMDEYVASLHLPTFDA----HLTELSDEQAKYMGL  283 (542)
Q Consensus       208 Lvnl~~~thp~~vmd~sfa~q~la~~~L~~~~~~~~~~gv~~lp~~~d~~VA~l~L~~lg~----~i~~lt~~~a~~lg~  283 (542)
                       .|           ..+.|..+++.+-.+..   +...              ++..+++|+    .|++..+++++++|+
T Consensus        90 -~n-----------a~aVAE~~~~~lL~l~r---~~g~--------------~L~gktvGIIG~G~IG~~vA~~l~a~G~  140 (378)
T PRK15438         90 -CN-----------AIAVVEYVFSSLLMLAE---RDGF--------------SLHDRTVGIVGVGNVGRRLQARLEALGI  140 (378)
T ss_pred             -cC-----------chHHHHHHHHHHHHHhc---cCCC--------------CcCCCEEEEECcCHHHHHHHHHHHHCCC
Confidence             01           22344444444322221   1111              345677777    999999999999999


Q ss_pred             CC--CCCCCCCccccCCeeeeehhhhcccCcEEEE----ccC----CCCccCHhHHhcCCCCcEEEccCCCCcccccccc
Q psy4626         284 NK--AGPFKPSYYSMDGFSVVKLNEVIRTVDIVVT----ATG----NKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSL  353 (542)
Q Consensus       284 ~e--~~p~~a~ea~mdG~~v~~~~~a~~~~d~~~t----~tg----~~~vi~~~~~~~mk~gail~n~gh~~~Ei~~~~l  353 (542)
                      ..  .||.++-+  .++....++++++++||||+.    +..    +.++|+.+.|++||+|++|+|+||+.+ ||-++|
T Consensus       141 ~V~~~dp~~~~~--~~~~~~~~L~ell~~sDiI~lh~PLt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~v-VDe~AL  217 (378)
T PRK15438        141 KTLLCDPPRADR--GDEGDFRSLDELVQEADILTFHTPLFKDGPYKTLHLADEKLIRSLKPGAILINACRGAV-VDNTAL  217 (378)
T ss_pred             EEEEECCccccc--ccccccCCHHHHHhhCCEEEEeCCCCCCcccccccccCHHHHhcCCCCcEEEECCCchh-cCHHHH
Confidence            53  36776532  233345689999999999996    232    889999999999999999999999987 354444


Q ss_pred             c
Q psy4626         354 R  354 (542)
Q Consensus       354 ~  354 (542)
                      -
T Consensus       218 ~  218 (378)
T PRK15438        218 L  218 (378)
T ss_pred             H
Confidence            3

>PRK07574 formate dehydrogenase; Provisional

Probab=98.76  E-value=4.8e-08  Score=104.41  Aligned_cols=228  Identities=13%  Similarity=0.132  Sum_probs=139.2

Q ss_pred             ChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccC
Q psy4626          86 GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGH  165 (542)
Q Consensus        86 G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~  165 (542)
                      |..|.  -+.++..|.++++++..+.          .-..+.+.++++|++|.....+.-++++.++.+++-..+...|.
T Consensus        56 ~~~~~--~~~l~~~g~e~~~~~~~~~----------~~~~~~~~l~dadili~~~~~~~~~~~e~l~~~p~LK~I~~~g~  123 (385)
T PRK07574         56 GELGL--RKFLEERGHELVVTSDKDG----------PDSDFEKELPDADVVISQPFWPAYLTAERIAKAPNLKLAITAGI  123 (385)
T ss_pred             ChhhH--HHHHHhcCcEEEEeCCCCC----------CHHHHHHHcCCCeEEEEecCCCCCCCHHHHhhCCCCcEEEECCc
Confidence            55554  3678888988887631110          00122445688999987532223467888999988888989999


Q ss_pred             CCcccChHhhcCCCcceeeeccceeeEecCCCCEEEEecCCCcccccCCCChhHHHhhHHHHHHHHHHHHhcCCCCCCCC
Q psy4626         166 SNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIVLLAEGRLVNLSCSSLPSFVVSITACTQALALIELFNAPSGRYKS  245 (542)
Q Consensus       166 g~~eid~~aL~~~~l~v~~~~~~v~~y~~~dg~~I~LLa~GrLvnl~~~thp~~vmd~sfa~q~la~~~L~~~~~~~~~~  245 (542)
                      |-+.+|++++.++++.+..+..                     .|-.....-...+-+++..++.........  ++|..
T Consensus       124 G~D~id~~aa~~~gI~V~n~~g---------------------~~a~~VAE~al~l~L~l~R~~~~~~~~~~~--g~W~~  180 (385)
T PRK07574        124 GSDHVDLQAASEHGITVAEVTG---------------------SNSISVAEHVVMMILALVRNYEPSHRQAVE--GGWNI  180 (385)
T ss_pred             ccccccHHHHHHCCcEEEcCCC---------------------CchHHHHHHHHHHHHHHHcCHHHHHHHHHh--CCCCc
Confidence            9888999988766555543321                     000000000001112222222222222222  46653


Q ss_pred             ccccCChhhHHHHHHhcCCcccc----ccccccHHHHhhcCCC--CCCCCCCCc--cccCCee-eeehhhhcccCcEEEE
Q psy4626         246 DVYLLPKKMDEYVASLHLPTFDA----HLTELSDEQAKYMGLN--KAGPFKPSY--YSMDGFS-VVKLNEVIRTVDIVVT  316 (542)
Q Consensus       246 gv~~lp~~~d~~VA~l~L~~lg~----~i~~lt~~~a~~lg~~--e~~p~~a~e--a~mdG~~-v~~~~~a~~~~d~~~t  316 (542)
                      .-...      .--++..+++|+    .|++..+++++++|+.  -.||.+.-+  ..-.|.+ ..+++|+++.+|+|++
T Consensus       181 ~~~~~------~~~~L~gktVGIvG~G~IG~~vA~~l~~fG~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l  254 (385)
T PRK07574        181 ADCVS------RSYDLEGMTVGIVGAGRIGLAVLRRLKPFDVKLHYTDRHRLPEEVEQELGLTYHVSFDSLVSVCDVVTI  254 (385)
T ss_pred             ccccc------cceecCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCchhhHhhcCceecCCHHHHhhcCCEEEE
Confidence            21000      001345566666    8999999999999994  335544111  1123443 3589999999999999


Q ss_pred             ----ccCCCCccCHhHHhcCCCCcEEEccCCCCcccccccccC
Q psy4626         317 ----ATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRT  355 (542)
Q Consensus       317 ----~tg~~~vi~~~~~~~mk~gail~n~gh~~~Ei~~~~l~~  355 (542)
                          +..++++|+.+.|++||+|++++|+||+.+- |-++|.+
T Consensus       255 ~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iV-De~AL~~  296 (385)
T PRK07574        255 HCPLHPETEHLFDADVLSRMKRGSYLVNTARGKIV-DRDAVVR  296 (385)
T ss_pred             cCCCCHHHHHHhCHHHHhcCCCCcEEEECCCCchh-hHHHHHH
Confidence                5668899999999999999999999999874 6555554

>PRK00257 erythronate-4-phosphate dehydrogenase; Validated

Probab=98.73  E-value=2.1e-07  Score=99.47  Aligned_cols=172  Identities=14%  Similarity=0.241  Sum_probs=114.8

Q ss_pred             HHhcCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCCCcccChHhhcCCCcceeeeccceeeEecCCCCEEEEecCCC
Q psy4626         128 EVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIVLLAEGR  207 (542)
Q Consensus       128 e~l~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g~~eid~~aL~~~~l~v~~~~~~v~~y~~~dg~~I~LLa~Gr  207 (542)
                      +.++++|+++..+.+  -++++.++ .++-..+..++.|-+.+|.+++.++++.+....+                    
T Consensus        33 ~~l~daD~liv~~~t--~v~~~ll~-~~~Lk~I~~~~~G~D~iD~~~~~~~gI~v~napg--------------------   89 (381)
T PRK00257         33 AAVRDADVLLVRSVT--RVDRALLE-GSRVRFVGTCTIGTDHLDLDYFAEAGITWSSAPG--------------------   89 (381)
T ss_pred             HHhCCceEEEEeCCC--CCCHHHhc-CCCCeEEEECCccccccCHHHHHHCCCEEEECCC--------------------
Confidence            457899998765433  36767776 3566667788888788999988765544432210                    


Q ss_pred             cccccCCCChhHHHhhHHHHHHHHHHHHhcCCCCCCCCccccCChhhHHHHHHhcCCcccc----ccccccHHHHhhcCC
Q psy4626         208 LVNLSCSSLPSFVVSITACTQALALIELFNAPSGRYKSDVYLLPKKMDEYVASLHLPTFDA----HLTELSDEQAKYMGL  283 (542)
Q Consensus       208 Lvnl~~~thp~~vmd~sfa~q~la~~~L~~~~~~~~~~gv~~lp~~~d~~VA~l~L~~lg~----~i~~lt~~~a~~lg~  283 (542)
                           +  +     ..+.|..+++.+-.+..   +...              ++..+++|+    .|++..+++++++|+
T Consensus        90 -----~--n-----a~aVAE~v~~~lL~l~r---~~g~--------------~l~gktvGIIG~G~IG~~va~~l~a~G~  140 (381)
T PRK00257         90 -----C--N-----ARGVVDYVLGSLLTLAE---REGV--------------DLAERTYGVVGAGHVGGRLVRVLRGLGW  140 (381)
T ss_pred             -----c--C-----hHHHHHHHHHHHHHHhc---ccCC--------------CcCcCEEEEECCCHHHHHHHHHHHHCCC
Confidence                 0  1     12334444443322211   1111              244567776    889999999999999


Q ss_pred             C--CCCCCCCCccccCCeeeeehhhhcccCcEEEE----cc----CCCCccCHhHHhcCCCCcEEEccCCCCcccccccc
Q psy4626         284 N--KAGPFKPSYYSMDGFSVVKLNEVIRTVDIVVT----AT----GNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSL  353 (542)
Q Consensus       284 ~--e~~p~~a~ea~mdG~~v~~~~~a~~~~d~~~t----~t----g~~~vi~~~~~~~mk~gail~n~gh~~~Ei~~~~l  353 (542)
                      .  -.||.+.-.  ..+....+++|+++++|+|++    +.    -++++|+.+.|+.||+|++|+|+||+.+- |-++|
T Consensus       141 ~V~~~Dp~~~~~--~~~~~~~~l~ell~~aDiV~lh~Plt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~vV-de~AL  217 (381)
T PRK00257        141 KVLVCDPPRQEA--EGDGDFVSLERILEECDVISLHTPLTKEGEHPTRHLLDEAFLASLRPGAWLINASRGAVV-DNQAL  217 (381)
T ss_pred             EEEEECCccccc--ccCccccCHHHHHhhCCEEEEeCcCCCCccccccccCCHHHHhcCCCCeEEEECCCCccc-CHHHH
Confidence            4  346765432  233455689999999999998    22    37899999999999999999999999884 54444


Q ss_pred             c
Q psy4626         354 R  354 (542)
Q Consensus       354 ~  354 (542)
                      .
T Consensus       218 ~  218 (381)
T PRK00257        218 R  218 (381)
T ss_pred             H
Confidence            3

>PLN02928 oxidoreductase family protein

Probab=98.73  E-value=5.4e-08  Score=102.80  Aligned_cols=188  Identities=14%  Similarity=0.154  Sum_probs=117.7

Q ss_pred             HHhcCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCCCcccChHhhcCCCcceeeeccceeeEecCCCCEEEEecCCC
Q psy4626         128 EVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIVLLAEGR  207 (542)
Q Consensus       128 e~l~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g~~eid~~aL~~~~l~v~~~~~~v~~y~~~dg~~I~LLa~Gr  207 (542)
                      +.++++|+++... .  -++++.++.+++-..+...|.|-+.+|++++..+++.+.......                  
T Consensus        57 ~~~~~~d~~i~~~-~--~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gi~v~n~~~~~------------------  115 (347)
T PLN02928         57 DVIANYDICVPKM-M--RLDADIIARASQMKLIMQFGVGLEGVDVDAATKHGIKVARIPSEG------------------  115 (347)
T ss_pred             HHhcCCcEEEECC-C--CCCHHHHhcCCCceEEEECCcccCcCcHHHHHhCCCEEEECCCCC------------------
Confidence            4567899877542 1  366788888887778888888878899888876555443321000                  


Q ss_pred             cccccCCCChhHHHh------hHHHHHHHHHHHHhcCCCCCCCCccccCChhhHHHHHHhcCCcccc----ccccccHHH
Q psy4626         208 LVNLSCSSLPSFVVS------ITACTQALALIELFNAPSGRYKSDVYLLPKKMDEYVASLHLPTFDA----HLTELSDEQ  277 (542)
Q Consensus       208 Lvnl~~~thp~~vmd------~sfa~q~la~~~L~~~~~~~~~~gv~~lp~~~d~~VA~l~L~~lg~----~i~~lt~~~  277 (542)
                            ..++..+-+      ++++.++.......++  +.|...   .+       .++..+++|+    .|++..+++
T Consensus       116 ------~~~~~~vAE~av~l~L~~~R~~~~~~~~~~~--~~w~~~---~~-------~~l~gktvGIiG~G~IG~~vA~~  177 (347)
T PLN02928        116 ------TGNAASCAEMAIYLMLGLLRKQNEMQISLKA--RRLGEP---IG-------DTLFGKTVFILGYGAIGIELAKR  177 (347)
T ss_pred             ------CcChHHHHHHHHHHHHHHHhCHHHHHHHHHc--CCcccc---cc-------cCCCCCEEEEECCCHHHHHHHHH
Confidence                  001111111      1222222111122222  345321   00       1355677777    899999999


Q ss_pred             HhhcCCCC--CCCCCC--Ccc------------ccCCeeeeehhhhcccCcEEEE----ccCCCCccCHhHHhcCCCCcE
Q psy4626         278 AKYMGLNK--AGPFKP--SYY------------SMDGFSVVKLNEVIRTVDIVVT----ATGNKNVVTREHMDKMKNGCV  337 (542)
Q Consensus       278 a~~lg~~e--~~p~~a--~ea------------~mdG~~v~~~~~a~~~~d~~~t----~tg~~~vi~~~~~~~mk~gai  337 (542)
                      ++++|+..  .||...  .+.            ...++...+++|++++||||++    +..|+++|+.+.|++||+||+
T Consensus       178 l~afG~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ell~~aDiVvl~lPlt~~T~~li~~~~l~~Mk~ga~  257 (347)
T PLN02928        178 LRPFGVKLLATRRSWTSEPEDGLLIPNGDVDDLVDEKGGHEDIYEFAGEADIVVLCCTLTKETAGIVNDEFLSSMKKGAL  257 (347)
T ss_pred             HhhCCCEEEEECCCCChhhhhhhccccccccccccccCcccCHHHHHhhCCEEEECCCCChHhhcccCHHHHhcCCCCeE
Confidence            99999943  234311  110            1122355689999999999999    678999999999999999999


Q ss_pred             EEccCCCCcccccccccC
Q psy4626         338 VCNMGHSNTEIDVNSLRT  355 (542)
Q Consensus       338 l~n~gh~~~Ei~~~~l~~  355 (542)
                      ++|+||+.+ ||-++|-+
T Consensus       258 lINvaRG~l-Vde~AL~~  274 (347)
T PLN02928        258 LVNIARGGL-LDYDAVLA  274 (347)
T ss_pred             EEECCCccc-cCHHHHHH
Confidence            999999976 46555543

>PLN02306 hydroxypyruvate reductase

Probab=98.70  E-value=1.5e-07  Score=100.73  Aligned_cols=194  Identities=15%  Similarity=0.160  Sum_probs=115.1

Q ss_pred             HHh-cCCcEEEEcCCCcccCCHHHHhccCC--CeEEEeccCCCcccChHhhcCCCcceeeeccceeeEecCCCCEEEEec
Q psy4626         128 EVI-RTVDIVVTATGNKNVVTREHMDKMKN--GCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIVLLA  204 (542)
Q Consensus       128 e~l-~~aDvVi~atG~~~lI~~e~l~~mk~--GailvnvG~g~~eid~~aL~~~~l~v~~~~~~v~~y~~~dg~~I~LLa  204 (542)
                      +.+ .++|+++.....  -++++.++.+++  -..+...|.|-+.+|++++.++++.+......                
T Consensus        57 ~~~~~~~d~vi~~~~~--~i~~~~l~~~~~l~lk~I~~~~~G~D~iD~~aa~~~gI~V~n~pg~----------------  118 (386)
T PLN02306         57 ALIGDKCDGVIGQLTE--DWGETLFSALSKAGGKAFSNMAVGYNNVDVEAANKYGIAVGNTPGV----------------  118 (386)
T ss_pred             HHhhcCCcEEEEcCCC--CcCHHHHHhCCcCCceEEEECCcccccccHHHHHHCCCEEEECCCc----------------
Confidence            344 569988765322  367888998875  35666777777789999887655544332110                


Q ss_pred             CCCcccccCCCChhHHHhhHHHHHHHHHHHHhcCCCCCCCCccc-cCChhhHHHHHHhcCCcccc----ccccccHHHHh
Q psy4626         205 EGRLVNLSCSSLPSFVVSITACTQALALIELFNAPSGRYKSDVY-LLPKKMDEYVASLHLPTFDA----HLTELSDEQAK  279 (542)
Q Consensus       205 ~GrLvnl~~~thp~~vmd~sfa~q~la~~~L~~~~~~~~~~gv~-~lp~~~d~~VA~l~L~~lg~----~i~~lt~~~a~  279 (542)
                           +-.....-...+-++++.++.........  ++|..-.. ....      -++..+++|+    +|++..+++++
T Consensus       119 -----~~~~VAE~al~liLal~R~i~~~~~~~~~--g~w~~~~~~~~~g------~~L~gktvGIiG~G~IG~~vA~~l~  185 (386)
T PLN02306        119 -----LTETTAELAASLSLAAARRIVEADEFMRA--GLYEGWLPHLFVG------NLLKGQTVGVIGAGRIGSAYARMMV  185 (386)
T ss_pred             -----CHHHHHHHHHHHHHHHHhChHHHHHHHHc--CCCccccccccCC------cCCCCCEEEEECCCHHHHHHHHHHH
Confidence                 00000000001112222222222222222  33421000 0000      1456678887    99999999974


Q ss_pred             -hcCCCC--CCCCCC--Cc----ccc------C----Cee-eeehhhhcccCcEEEE----ccCCCCccCHhHHhcCCCC
Q psy4626         280 -YMGLNK--AGPFKP--SY----YSM------D----GFS-VVKLNEVIRTVDIVVT----ATGNKNVVTREHMDKMKNG  335 (542)
Q Consensus       280 -~lg~~e--~~p~~a--~e----a~m------d----G~~-v~~~~~a~~~~d~~~t----~tg~~~vi~~~~~~~mk~g  335 (542)
                       ++|+..  .||+..  .+    ..-      .    +++ +.+++|++++||||+.    +..|+++|+.+.|++||+|
T Consensus       186 ~~fGm~V~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~~sDiV~lh~Plt~~T~~lin~~~l~~MK~g  265 (386)
T PLN02306        186 EGFKMNLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLREADVISLHPVLDKTTYHLINKERLALMKKE  265 (386)
T ss_pred             hcCCCEEEEECCCCchhhhhhhhhhcccccccccccccccccCCHHHHHhhCCEEEEeCCCChhhhhhcCHHHHHhCCCC
Confidence             999953  355432  11    100      0    122 3589999999999999    7789999999999999999


Q ss_pred             cEEEccCCCCcccccccc
Q psy4626         336 CVVCNMGHSNTEIDVNSL  353 (542)
Q Consensus       336 ail~n~gh~~~Ei~~~~l  353 (542)
                      |+|+|+||+.+= |-++|
T Consensus       266 a~lIN~aRG~lV-De~AL  282 (386)
T PLN02306        266 AVLVNASRGPVI-DEVAL  282 (386)
T ss_pred             eEEEECCCcccc-CHHHH
Confidence            999999999873 44444

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=98.66  E-value=8.2e-08  Score=105.64  Aligned_cols=91  Identities=23%  Similarity=0.406  Sum_probs=76.9

Q ss_pred             ccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeC----------------------------H
Q psy4626          75 FGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVK----------------------------L  126 (542)
Q Consensus        75 l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~----------------------------l  126 (542)
                      .++.+|+|+|+|++|+..++.++.+|++|+++|.++.++.++...|...+.                            +
T Consensus       162 vp~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~~  241 (511)
T TIGR00561       162 VPPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMELF  241 (511)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeccccccccccccceeecCHHHHHHHHHHH
Confidence            467899999999999999999999999999999999988888777766421                            1


Q ss_pred             HHHhcCCcEEEEcC---CC--cccCCHHHHhccCCCeEEEeccC
Q psy4626         127 NEVIRTVDIVVTAT---GN--KNVVTREHMDKMKNGCVVCNMGH  165 (542)
Q Consensus       127 ~e~l~~aDvVi~at---G~--~~lI~~e~l~~mk~GailvnvG~  165 (542)
                      .+.++++|++|+|.   |.  +.+++++.++.||+|+++++++.
T Consensus       242 ~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVDlA~  285 (511)
T TIGR00561       242 AAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVDLAA  285 (511)
T ss_pred             HHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEEeee
Confidence            23357899999987   54  44789999999999999999885

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=98.65  E-value=9e-08  Score=99.93  Aligned_cols=119  Identities=18%  Similarity=0.307  Sum_probs=89.8

Q ss_pred             HHHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCCC-EEEEEeCCchhhhhhhcCCce-eeC-----HHHHh---cC
Q psy4626          63 IIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMDGFS-VVK-----LNEVI---RT  132 (542)
Q Consensus        63 ~~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga-~Viv~d~dp~r~~~A~~~G~~-v~~-----l~e~l---~~  132 (542)
                      .++++.+..  ..+|++|+|.|.|++|..+++.++.+|+ +|++++.++.+...+...|++ +++     ..+..   ..
T Consensus       158 a~~al~~~~--~~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~  235 (343)
T PRK09880        158 AIHAAHQAG--DLQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGADKLVNPQNDDLDHYKAEKGY  235 (343)
T ss_pred             HHHHHHhcC--CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCcEEecCCcccHHHHhccCCC
Confidence            366665542  3479999999999999999999999999 699999999998888888875 332     22322   23


Q ss_pred             CcEEEEcCCCcccCCHHHHhccCCCeEEEeccCCC--cccChHhhcCCCcceee
Q psy4626         133 VDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSN--TEIDVNSLRTPDLTWEK  184 (542)
Q Consensus       133 aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g~--~eid~~aL~~~~l~v~~  184 (542)
                      .|++|+++|....+. ..++.+++|+.++.+|...  .++++..+..+++++.+
T Consensus       236 ~D~vid~~G~~~~~~-~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~k~~~i~g  288 (343)
T PRK09880        236 FDVSFEVSGHPSSIN-TCLEVTRAKGVMVQVGMGGAPPEFPMMTLIVKEISLKG  288 (343)
T ss_pred             CCEEEECCCCHHHHH-HHHHHhhcCCEEEEEccCCCCCccCHHHHHhCCcEEEE
Confidence            899999999866664 7899999999999999753  35555555445555444

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=98.65  E-value=2.6e-07  Score=93.87  Aligned_cols=119  Identities=18%  Similarity=0.256  Sum_probs=88.7

Q ss_pred             HHHHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCCCE-EEEEeCCchhhhhhhcCCce-eeCH---HHH----h--
Q psy4626          62 SIIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCV-IYITEIDPICALQACMDGFS-VVKL---NEV----I--  130 (542)
Q Consensus        62 s~~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga~-Viv~d~dp~r~~~A~~~G~~-v~~l---~e~----l--  130 (542)
                      ..++++.+..  ..+|++|+|+|.|++|..+++.++.+|++ |++++.++.|...+...|++ +++.   .+.    .  
T Consensus       108 ta~~al~~~~--~~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~  185 (280)
T TIGR03366       108 TVMAALEAAG--DLKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSFGATALAEPEVLAERQGGLQNG  185 (280)
T ss_pred             HHHHHHHhcc--CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCcEecCchhhHHHHHHHhCC
Confidence            3456665542  24899999999999999999999999996 99999999888888888875 3332   111    1  


Q ss_pred             cCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCC----CcccChHhhcCCCccee
Q psy4626         131 RTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHS----NTEIDVNSLRTPDLTWE  183 (542)
Q Consensus       131 ~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g----~~eid~~aL~~~~l~v~  183 (542)
                      .++|++++++|....+. +.++.+++++.++.+|..    ..+++...+..+++++.
T Consensus       186 ~g~d~vid~~G~~~~~~-~~~~~l~~~G~iv~~G~~~~~~~~~i~~~~~~~~~~~i~  241 (280)
T TIGR03366       186 RGVDVALEFSGATAAVR-ACLESLDVGGTAVLAGSVFPGGPVALDPEQVVRRWLTIR  241 (280)
T ss_pred             CCCCEEEECCCChHHHH-HHHHHhcCCCEEEEeccCCCCCceeeCHHHHHhCCcEEE
Confidence            36899999999877674 789999999999999953    13556665554444443

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>PRK13243 glyoxylate reductase; Reviewed

Probab=98.65  E-value=1.5e-07  Score=98.99  Aligned_cols=197  Identities=16%  Similarity=0.187  Sum_probs=123.6

Q ss_pred             HHhcCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCCCcccChHhhcCCCcceeeeccceeeEecCCCCEEEEecCCC
Q psy4626         128 EVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIVLLAEGR  207 (542)
Q Consensus       128 e~l~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g~~eid~~aL~~~~l~v~~~~~~v~~y~~~dg~~I~LLa~Gr  207 (542)
                      +.++++|+++.....  -++++.++.+++-..+...|.|-+.+|++++.++++.+......                   
T Consensus        41 ~~~~~~d~~i~~~~~--~~~~~~l~~~p~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~g~-------------------   99 (333)
T PRK13243         41 EKVRDVDALVTMLSE--RIDCEVFEAAPRLRIVANYAVGYDNIDVEEATRRGIYVTNTPGV-------------------   99 (333)
T ss_pred             HHhCCCcEEEEeCCC--CCCHHHHhhCCCCeEEEecCccccccCHHHHHHcCCEEEECCCC-------------------
Confidence            456889998764222  36778899998888899999998889999887665544432210                   


Q ss_pred             cccccCCCChhHH--HhhHHHHHHHHHHHHhcCCCCCCCCccc-cCChhhHHHHHHhcCCcccc----ccccccHHHHhh
Q psy4626         208 LVNLSCSSLPSFV--VSITACTQALALIELFNAPSGRYKSDVY-LLPKKMDEYVASLHLPTFDA----HLTELSDEQAKY  280 (542)
Q Consensus       208 Lvnl~~~thp~~v--md~sfa~q~la~~~L~~~~~~~~~~gv~-~lp~~~d~~VA~l~L~~lg~----~i~~lt~~~a~~  280 (542)
                        | +. .....+  +-++++.++.......++  +.|...-+ .-+...  .-.++..+++|+    .|++..+++++.
T Consensus       100 --~-~~-~vAE~~~~l~L~~~R~~~~~~~~~~~--g~W~~~~~~~~~~~~--~g~~L~gktvgIiG~G~IG~~vA~~l~~  171 (333)
T PRK13243        100 --L-TE-ATADFAWALLLATARRLVEADHFVRS--GEWKRRGVAWHPLMF--LGYDVYGKTIGIIGFGRIGQAVARRAKG  171 (333)
T ss_pred             --C-hH-HHHHHHHHHHHHHHhCHHHHHHHHHc--CCCCccccccccccc--cccCCCCCEEEEECcCHHHHHHHHHHHH
Confidence              0 00 000011  112233333222222332  46653200 000000  001456677776    899999999999


Q ss_pred             cCCC--CCCCCCC-CccccCCeeeeehhhhcccCcEEEE----ccCCCCccCHhHHhcCCCCcEEEccCCCCcccccccc
Q psy4626         281 MGLN--KAGPFKP-SYYSMDGFSVVKLNEVIRTVDIVVT----ATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSL  353 (542)
Q Consensus       281 lg~~--e~~p~~a-~ea~mdG~~v~~~~~a~~~~d~~~t----~tg~~~vi~~~~~~~mk~gail~n~gh~~~Ei~~~~l  353 (542)
                      +|+.  -.||... ..+.-.|+...+++|++++||+|+.    +..++++|+.+.|+.||+|++|+|+|++..- |-++|
T Consensus       172 ~G~~V~~~d~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lP~t~~T~~~i~~~~~~~mk~ga~lIN~aRg~~v-d~~aL  250 (333)
T PRK13243        172 FGMRILYYSRTRKPEAEKELGAEYRPLEELLRESDFVSLHVPLTKETYHMINEERLKLMKPTAILVNTARGKVV-DTKAL  250 (333)
T ss_pred             CCCEEEEECCCCChhhHHHcCCEecCHHHHHhhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECcCchhc-CHHHH
Confidence            9983  2244322 1222346666789999999999999    4567899999999999999999999999875 54444


Q ss_pred             c
Q psy4626         354 R  354 (542)
Q Consensus       354 ~  354 (542)
                      .
T Consensus       251 ~  251 (333)
T PRK13243        251 V  251 (333)
T ss_pred             H
Confidence            4

>TIGR00518 alaDH alanine dehydrogenase

Probab=98.63  E-value=1.1e-07  Score=101.27  Aligned_cols=92  Identities=22%  Similarity=0.360  Sum_probs=73.9

Q ss_pred             ccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhh-cCCcee-------eCHHHHhcCCcEEEEcC---C--
Q psy4626          75 FGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQAC-MDGFSV-------VKLNEVIRTVDIVVTAT---G--  141 (542)
Q Consensus        75 l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~-~~G~~v-------~~l~e~l~~aDvVi~at---G--  141 (542)
                      +.+++|+|+|+|.+|+.+++.|+.+|++|+++|+++.+...+. ..+..+       ..+.+.+.++|+||+|+   |  
T Consensus       165 l~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~~v~~~~~~~~~l~~~l~~aDvVI~a~~~~g~~  244 (370)
T TIGR00518       165 VEPGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEFGGRIHTRYSNAYEIEDAVKRADLLIGAVLIPGAK  244 (370)
T ss_pred             CCCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcCceeEeccCCHHHHHHHHccCCEEEEccccCCCC
Confidence            4678899999999999999999999999999999988765443 233321       12456678999999987   4  


Q ss_pred             CcccCCHHHHhccCCCeEEEeccCC
Q psy4626         142 NKNVVTREHMDKMKNGCVVCNMGHS  166 (542)
Q Consensus       142 ~~~lI~~e~l~~mk~GailvnvG~g  166 (542)
                      ++.+++++.++.||+++++++++..
T Consensus       245 ~p~lit~~~l~~mk~g~vIvDva~d  269 (370)
T TIGR00518       245 APKLVSNSLVAQMKPGAVIVDVAID  269 (370)
T ss_pred             CCcCcCHHHHhcCCCCCEEEEEecC
Confidence            2566889999999999999999853

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase

Probab=98.62  E-value=1.6e-07  Score=104.49  Aligned_cols=192  Identities=17%  Similarity=0.280  Sum_probs=122.9

Q ss_pred             HHhcCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCCCcccChHhhcCCCcceeeeccceeeEecCCCCEEEEecCCC
Q psy4626         128 EVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIVLLAEGR  207 (542)
Q Consensus       128 e~l~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g~~eid~~aL~~~~l~v~~~~~~v~~y~~~dg~~I~LLa~Gr  207 (542)
                      +.++++|+++....+  -++++.++.+++-..+...|.|-+.+|++++.++++.+.....                    
T Consensus        36 ~~~~~~d~li~~~~~--~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~V~n~pg--------------------   93 (525)
T TIGR01327        36 EIIPDYDALIVRSAT--KVTEEVIAAAPKLKVIGRAGVGVDNIDIEAATARGILVVNAPT--------------------   93 (525)
T ss_pred             HHhcCCCEEEEcCCC--CcCHHHHhhCCCceEEEECCcccchhcHHHHHHCCCEEEeCCC--------------------
Confidence            456889998875433  3677888988888888899999888999988765554443211                    


Q ss_pred             cccccCCCChhHHHhhHHHHHHHHHHHHhcCCCCCCCCccccCChhhHHHHHHhcCCcccc----ccccccHHHHhhcCC
Q psy4626         208 LVNLSCSSLPSFVVSITACTQALALIELFNAPSGRYKSDVYLLPKKMDEYVASLHLPTFDA----HLTELSDEQAKYMGL  283 (542)
Q Consensus       208 Lvnl~~~thp~~vmd~sfa~q~la~~~L~~~~~~~~~~gv~~lp~~~d~~VA~l~L~~lg~----~i~~lt~~~a~~lg~  283 (542)
                       .|-.....-...|-++++.++-......+.  ++|...-+ ..       .++..+++|+    .|++..+++++++|+
T Consensus        94 -~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~--g~W~~~~~-~g-------~~l~gktvgIiG~G~IG~~vA~~l~~fG~  162 (525)
T TIGR01327        94 -GNTISAAEHALAMLLAAARNIPQADASLKE--GEWDRKAF-MG-------TELYGKTLGVIGLGRIGSIVAKRAKAFGM  162 (525)
T ss_pred             -cChHHHHHHHHHHHHHHhcCHHHHHHHHHc--CCcccccc-Cc-------cccCCCEEEEECCCHHHHHHHHHHHhCCC
Confidence             000000000111112233322222222222  46754211 01       1355677776    889999999999998


Q ss_pred             C--CCCCCCCC-ccccCCeeee-ehhhhcccCcEEEE----ccCCCCccCHhHHhcCCCCcEEEccCCCCcccccccc
Q psy4626         284 N--KAGPFKPS-YYSMDGFSVV-KLNEVIRTVDIVVT----ATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSL  353 (542)
Q Consensus       284 ~--e~~p~~a~-ea~mdG~~v~-~~~~a~~~~d~~~t----~tg~~~vi~~~~~~~mk~gail~n~gh~~~Ei~~~~l  353 (542)
                      .  -.||+..- .+.-.|++.+ +++|+++++|+|++    +..++++|+.+.|++||+|++++|+||+.+- |-++|
T Consensus       163 ~V~~~d~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~~v-de~aL  239 (525)
T TIGR01327       163 KVLAYDPYISPERAEQLGVELVDDLDELLARADFITVHTPLTPETRGLIGAEELAKMKKGVIIVNCARGGII-DEAAL  239 (525)
T ss_pred             EEEEECCCCChhHHHhcCCEEcCCHHHHHhhCCEEEEccCCChhhccCcCHHHHhcCCCCeEEEEcCCCcee-CHHHH
Confidence            4  33564221 2223466654 79999999999998    5578999999999999999999999999874 43333

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=98.55  E-value=6.9e-07  Score=87.37  Aligned_cols=93  Identities=19%  Similarity=0.311  Sum_probs=72.7

Q ss_pred             CccccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcC-CceeeCHHHHh-cCCcEEEEcCCCcccCCHH
Q psy4626          72 DVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMD-GFSVVKLNEVI-RTVDIVVTATGNKNVVTRE  149 (542)
Q Consensus        72 ~~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~-G~~v~~l~e~l-~~aDvVi~atG~~~lI~~e  149 (542)
                      +..+.|++++|+|+|.+|+.+|+.|..+|++|+++|+++.+..+.... |...++.++++ ..+|+++.|+. .++++.+
T Consensus        23 ~~~l~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~~~~g~~~v~~~~l~~~~~Dv~vp~A~-~~~I~~~  101 (200)
T cd01075          23 TDSLEGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADINEEAVARAAELFGATVVAPEEIYSVDADVFAPCAL-GGVINDD  101 (200)
T ss_pred             CCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCCEEEcchhhccccCCEEEeccc-ccccCHH
Confidence            467899999999999999999999999999999999998776554333 66666666666 47999997653 3588988


Q ss_pred             HHhccCCCeEEEeccCC
Q psy4626         150 HMDKMKNGCVVCNMGHS  166 (542)
Q Consensus       150 ~l~~mk~GailvnvG~g  166 (542)
                      .++.|+.. +++--+-+
T Consensus       102 ~~~~l~~~-~v~~~AN~  117 (200)
T cd01075         102 TIPQLKAK-AIAGAANN  117 (200)
T ss_pred             HHHHcCCC-EEEECCcC
Confidence            99999754 44444433

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=98.53  E-value=4.5e-07  Score=100.85  Aligned_cols=192  Identities=18%  Similarity=0.271  Sum_probs=123.5

Q ss_pred             HHhcCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCCCcccChHhhcCCCcceeeeccceeeEecCCCCEEEEecCCC
Q psy4626         128 EVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIVLLAEGR  207 (542)
Q Consensus       128 e~l~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g~~eid~~aL~~~~l~v~~~~~~v~~y~~~dg~~I~LLa~Gr  207 (542)
                      +.++++|+++....+  -++++.++.+++-..+...|.|-+.+|++++.++++.+......                   
T Consensus        38 ~~~~~~d~~i~~~~~--~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~V~n~p~~-------------------   96 (526)
T PRK13581         38 EIIGDYDALIVRSAT--KVTAEVLEAAKNLKVIGRAGVGVDNVDVPAATRRGIIVVNAPTG-------------------   96 (526)
T ss_pred             HHhcCCCEEEEcCCC--CCCHHHHhhCCCCeEEEECCcccccccHHHHHHCCCEEEeCCCC-------------------
Confidence            446889998875433  46778899998888899999998889999887655544332100                   


Q ss_pred             cccccCCCChhHHHhhHHHHHHHHHHHHhcCCCCCCCCccccCChhhHHHHHHhcCCcccc----ccccccHHHHhhcCC
Q psy4626         208 LVNLSCSSLPSFVVSITACTQALALIELFNAPSGRYKSDVYLLPKKMDEYVASLHLPTFDA----HLTELSDEQAKYMGL  283 (542)
Q Consensus       208 Lvnl~~~thp~~vmd~sfa~q~la~~~L~~~~~~~~~~gv~~lp~~~d~~VA~l~L~~lg~----~i~~lt~~~a~~lg~  283 (542)
                        |-.....-...+-++++.++-......++  ++|...-+ ..       -++..+++|+    .|++..+++++++|+
T Consensus        97 --~~~~vAE~~l~l~L~~~R~~~~~~~~~~~--g~W~~~~~-~g-------~~l~gktvgIiG~G~IG~~vA~~l~~fG~  164 (526)
T PRK13581         97 --NTISAAEHTIALMLALARNIPQAHASLKA--GKWERKKF-MG-------VELYGKTLGIIGLGRIGSEVAKRAKAFGM  164 (526)
T ss_pred             --ChHHHHHHHHHHHHHHHcCHHHHHHHHHc--CCCCccCc-cc-------cccCCCEEEEECCCHHHHHHHHHHHhCCC
Confidence              00000000001112222222222222222  46754211 01       1355667776    899999999999999


Q ss_pred             C--CCCCCCCC-ccccCCeeeeehhhhcccCcEEEE----ccCCCCccCHhHHhcCCCCcEEEccCCCCcccccccc
Q psy4626         284 N--KAGPFKPS-YYSMDGFSVVKLNEVIRTVDIVVT----ATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSL  353 (542)
Q Consensus       284 ~--e~~p~~a~-ea~mdG~~v~~~~~a~~~~d~~~t----~tg~~~vi~~~~~~~mk~gail~n~gh~~~Ei~~~~l  353 (542)
                      .  -.||+..- .+.-.|++..+++|+++++|+|+.    +..++++|+.+.|++||+|++|+|+||+.+- |-++|
T Consensus       165 ~V~~~d~~~~~~~~~~~g~~~~~l~ell~~aDiV~l~lP~t~~t~~li~~~~l~~mk~ga~lIN~aRG~~v-de~aL  240 (526)
T PRK13581        165 KVIAYDPYISPERAAQLGVELVSLDELLARADFITLHTPLTPETRGLIGAEELAKMKPGVRIINCARGGII-DEAAL  240 (526)
T ss_pred             EEEEECCCCChhHHHhcCCEEEcHHHHHhhCCEEEEccCCChHhhcCcCHHHHhcCCCCeEEEECCCCcee-CHHHH
Confidence            4  33564322 223457777799999999999999    4568899999999999999999999999884 43333

>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates

Probab=98.50  E-value=2.8e-07  Score=86.87  Aligned_cols=90  Identities=22%  Similarity=0.368  Sum_probs=67.4

Q ss_pred             ccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCch-hhhhhhcCCceeeCHHHHhcCCcEEEEcCCC---cccCCHHH
Q psy4626          75 FGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPI-CALQACMDGFSVVKLNEVIRTVDIVVTATGN---KNVVTREH  150 (542)
Q Consensus        75 l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~-r~~~A~~~G~~v~~l~e~l~~aDvVi~atG~---~~lI~~e~  150 (542)
                      +.||+|.|+|||.-|...|+.||..|.+|++..+... ....|..+||++.+..|+++.+|+|+..+..   +.+...+.
T Consensus         2 l~~k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A~~~Gf~v~~~~eAv~~aDvV~~L~PD~~q~~vy~~~I   81 (165)
T PF07991_consen    2 LKGKTIAVIGYGSQGHAHALNLRDSGVNVIVGLREGSASWEKAKADGFEVMSVAEAVKKADVVMLLLPDEVQPEVYEEEI   81 (165)
T ss_dssp             HCTSEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHHHHTT-ECCEHHHHHHC-SEEEE-S-HHHHHHHHHHHH
T ss_pred             cCCCEEEEECCChHHHHHHHHHHhCCCCEEEEecCCCcCHHHHHHCCCeeccHHHHHhhCCEEEEeCChHHHHHHHHHHH
Confidence            5799999999999999999999999999999887665 4557889999999999999999999997532   23443455


Q ss_pred             HhccCCCeEEEecc
Q psy4626         151 MDKMKNGCVVCNMG  164 (542)
Q Consensus       151 l~~mk~GailvnvG  164 (542)
                      ...||+|..++..-
T Consensus        82 ~p~l~~G~~L~fah   95 (165)
T PF07991_consen   82 APNLKPGATLVFAH   95 (165)
T ss_dssp             HHHS-TT-EEEESS
T ss_pred             HhhCCCCCEEEeCC
Confidence            56899999887644

This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.

>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.46  E-value=1.3e-06  Score=89.79  Aligned_cols=92  Identities=24%  Similarity=0.444  Sum_probs=75.7

Q ss_pred             HHHHHHHHHHhhcCccccCcEEEEEcCCh-hHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCCcEEE
Q psy4626          59 CRESIIDSLKRSTDVMFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVV  137 (542)
Q Consensus        59 ~~~s~~~ai~r~~~~~l~GktVvViG~G~-IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~aDvVi  137 (542)
                      |-.+++.-+.+ .+..+.|++|+|+|.|. +|+.+|..|...|++|++++...             .++.+.+++||+||
T Consensus       141 Tp~ai~~ll~~-~~i~l~Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t-------------~~l~~~~~~ADIVI  206 (286)
T PRK14175        141 TPLGIMEILKH-ADIDLEGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRS-------------KDMASYLKDADVIV  206 (286)
T ss_pred             cHHHHHHHHHH-cCCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCc-------------hhHHHHHhhCCEEE
Confidence            34555554444 35679999999999998 99999999999999999998432             35677889999999


Q ss_pred             EcCCCcccCCHHHHhccCCCeEEEeccCCC
Q psy4626         138 TATGNKNVVTREHMDKMKNGCVVCNMGHSN  167 (542)
Q Consensus       138 ~atG~~~lI~~e~l~~mk~GailvnvG~g~  167 (542)
                      .++|.+++++++   .+|+|++++++|...
T Consensus       207 sAvg~p~~i~~~---~vk~gavVIDvGi~~  233 (286)
T PRK14175        207 SAVGKPGLVTKD---VVKEGAVIIDVGNTP  233 (286)
T ss_pred             ECCCCCcccCHH---HcCCCcEEEEcCCCc
Confidence            999999999865   479999999999753

>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.44  E-value=6.7e-07  Score=91.81  Aligned_cols=91  Identities=29%  Similarity=0.424  Sum_probs=75.0

Q ss_pred             HHHHHHHHHHhhcCccccCcEEEEEcCChh-HHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCCcEEE
Q psy4626          59 CRESIIDSLKRSTDVMFGGKQVVLCGYGEV-GKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVV  137 (542)
Q Consensus        59 ~~~s~~~ai~r~~~~~l~GktVvViG~G~I-G~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~aDvVi  137 (542)
                      |-++++.-+ +..+..+.|++|+|+|.|.+ |+.++..|...|++|++++..             .-++.+.++.||+||
T Consensus       141 Tp~aii~lL-~~~~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVt~~hs~-------------t~~l~~~~~~ADIVV  206 (285)
T PRK14189        141 TPYGVMKML-ESIGIPLRGAHAVVIGRSNIVGKPMAMLLLQAGATVTICHSK-------------TRDLAAHTRQADIVV  206 (285)
T ss_pred             CHHHHHHHH-HHcCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEecCC-------------CCCHHHHhhhCCEEE
Confidence            344555433 34567899999999999998 999999999999999998731             235677889999999


Q ss_pred             EcCCCcccCCHHHHhccCCCeEEEeccCC
Q psy4626         138 TATGNKNVVTREHMDKMKNGCVVCNMGHS  166 (542)
Q Consensus       138 ~atG~~~lI~~e~l~~mk~GailvnvG~g  166 (542)
                      .++|.+++++.   +.+|+|++++++|..
T Consensus       207 ~avG~~~~i~~---~~ik~gavVIDVGin  232 (285)
T PRK14189        207 AAVGKRNVLTA---DMVKPGATVIDVGMN  232 (285)
T ss_pred             EcCCCcCccCH---HHcCCCCEEEEcccc
Confidence            99999999985   568999999999964

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=98.44  E-value=4.7e-07  Score=92.79  Aligned_cols=89  Identities=29%  Similarity=0.415  Sum_probs=72.7

Q ss_pred             cCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhh-cCCcee-------eCHHHHhcCCcEEEEcC---C--C
Q psy4626          76 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQAC-MDGFSV-------VKLNEVIRTVDIVVTAT---G--N  142 (542)
Q Consensus        76 ~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~-~~G~~v-------~~l~e~l~~aDvVi~at---G--~  142 (542)
                      ...+|+|+|+|-+|...|+.+.++|++|++.|+|+.|+.+-. ..+.++       .++++.+..+|++|.+.   |  .
T Consensus       167 ~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~rv~~~~st~~~iee~v~~aDlvIgaVLIpgaka  246 (371)
T COG0686         167 LPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGGRVHTLYSTPSNIEEAVKKADLVIGAVLIPGAKA  246 (371)
T ss_pred             CCccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCceeEEEEcCHHHHHHHhhhccEEEEEEEecCCCC
Confidence            346899999999999999999999999999999998865432 223332       13577889999999853   3  6


Q ss_pred             cccCCHHHHhccCCCeEEEecc
Q psy4626         143 KNVVTREHMDKMKNGCVVCNMG  164 (542)
Q Consensus       143 ~~lI~~e~l~~mk~GailvnvG  164 (542)
                      +.++.++++..||||++++.++
T Consensus       247 PkLvt~e~vk~MkpGsVivDVA  268 (371)
T COG0686         247 PKLVTREMVKQMKPGSVIVDVA  268 (371)
T ss_pred             ceehhHHHHHhcCCCcEEEEEE
Confidence            6788889999999999999988

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=98.43  E-value=3.4e-06  Score=87.39  Aligned_cols=225  Identities=17%  Similarity=0.256  Sum_probs=136.4

Q ss_pred             CcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceee-CHHHHhcCCcEEEEc-CCC-----cc-----
Q psy4626          77 GKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVV-KLNEVIRTVDIVVTA-TGN-----KN-----  144 (542)
Q Consensus        77 GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~-~l~e~l~~aDvVi~a-tG~-----~~-----  144 (542)
                      |++++|+|.=.--..+++.|...|++|.++..+..   .-...|+... +.++++.++|+++.- .++     -.     
T Consensus         2 ~~~~~v~ggd~r~~~~~~~l~~~G~~v~~~g~~~~---~~~~~g~~~~~~~~~~~~~ad~ii~~~p~~~~~~~i~~~~~~   78 (296)
T PRK08306          2 GKHIAVIGGDARQLELIRKLVELGAKVSLVGFDQL---DHGFTGATKSSSLEEALSDVDVIILPVPGTNDEGNVDTVFSN   78 (296)
T ss_pred             CcEEEEEcCcHHHHHHHHHHHHCCCEEEEEecccc---ccccCCceeeccHHHHhccCCEEEECCccccCCceeeccccc
Confidence            78999999888889999999999999999754321   1123477665 457788999999973 111     01     


Q ss_pred             ---cCCHHHHhccCCCeEEEeccCCCcccChHhhcCCCcceeeeccceeeEecCCCCEEEEecCCCcccccCCCChhHHH
Q psy4626         145 ---VVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIVLLAEGRLVNLSCSSLPSFVV  221 (542)
Q Consensus       145 ---lI~~e~l~~mk~GailvnvG~g~~eid~~aL~~~~l~v~~~~~~v~~y~~~dg~~I~LLa~GrLvnl~~~thp~~vm  221 (542)
                         -++.+.++.||+|..++ +|.....++ +.+..+++++.+..        + .+.+.++      |           
T Consensus        79 ~~~~~~~~~l~~l~~~~~v~-~G~~~~~~~-~~~~~~gi~~~~~~--------~-~~~~~~~------n-----------  130 (296)
T PRK08306         79 EKLVLTEELLELTPEHCTIF-SGIANPYLK-ELAKETNRKLVELF--------E-RDDVAIL------N-----------  130 (296)
T ss_pred             cCCcchHHHHHhcCCCCEEE-EecCCHHHH-HHHHHCCCeEEEEe--------c-cchhhhh------c-----------
Confidence               12567899999997544 577765554 44444444443211        0 0011111      1           


Q ss_pred             hhHHHHHHHHHHHHhcCCCCCCCCccccCChhhHHHHHHhcCCcccc-ccccccHHHHhhcCCC----CCCCCCCCcccc
Q psy4626         222 SITACTQALALIELFNAPSGRYKSDVYLLPKKMDEYVASLHLPTFDA-HLTELSDEQAKYMGLN----KAGPFKPSYYSM  296 (542)
Q Consensus       222 d~sfa~q~la~~~L~~~~~~~~~~gv~~lp~~~d~~VA~l~L~~lg~-~i~~lt~~~a~~lg~~----e~~p~~a~ea~m  296 (542)
                      +.+.+.-.  ..+.+++    ++..++.           .+.-.+|. .+++.....++.+|+.    ..+|.+..++..
T Consensus       131 s~~~aega--v~~a~~~----~~~~l~g-----------~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~~  193 (296)
T PRK08306        131 SIPTAEGA--IMMAIEH----TPITIHG-----------SNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHLARITE  193 (296)
T ss_pred             cHhHHHHH--HHHHHHh----CCCCCCC-----------CEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence            11111111  1111221    1111100           01222333 5677777788888872    234544444555


Q ss_pred             CCeeeee---hhhhcccCcEEEEccCCCCccCHhHHhcCCCCcEEEccCCCCccccc
Q psy4626         297 DGFSVVK---LNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDV  350 (542)
Q Consensus       297 dG~~v~~---~~~a~~~~d~~~t~tg~~~vi~~~~~~~mk~gail~n~gh~~~Ei~~  350 (542)
                      .|++...   +.+.++.+|+||+++.. .+|+.+.++.||+|+++++.+.-....|.
T Consensus       194 ~G~~~~~~~~l~~~l~~aDiVI~t~p~-~~i~~~~l~~~~~g~vIIDla~~pggtd~  249 (296)
T PRK08306        194 MGLSPFHLSELAEEVGKIDIIFNTIPA-LVLTKEVLSKMPPEALIIDLASKPGGTDF  249 (296)
T ss_pred             cCCeeecHHHHHHHhCCCCEEEECCCh-hhhhHHHHHcCCCCcEEEEEccCCCCcCe
Confidence            6766553   46788999999999875 46899999999999999999887655553

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=98.43  E-value=7.7e-07  Score=93.25  Aligned_cols=121  Identities=16%  Similarity=0.196  Sum_probs=92.3

Q ss_pred             HHHHHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCcee-eCH--H---HHh-cCC
Q psy4626          61 ESIIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV-VKL--N---EVI-RTV  133 (542)
Q Consensus        61 ~s~~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v-~~l--~---e~l-~~a  133 (542)
                      -.++++++++  ..-+|++|+|+|.|-+|....|.++++|++|+++|+++.++..|.+.|.+. ++.  .   +.+ +.+
T Consensus       153 iT~y~alk~~--~~~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~  230 (339)
T COG1064         153 ITTYRALKKA--NVKPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIA  230 (339)
T ss_pred             eeEeeehhhc--CCCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhC
Confidence            4456677764  345899999999999999999999999999999999999999999999863 221  1   222 349


Q ss_pred             cEEEEcCCCcccCCHHHHhccCCCeEEEeccCCC-cc---cChHhhcCCCcceeee
Q psy4626         134 DIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSN-TE---IDVNSLRTPDLTWEKV  185 (542)
Q Consensus       134 DvVi~atG~~~lI~~e~l~~mk~GailvnvG~g~-~e---id~~aL~~~~l~v~~~  185 (542)
                      |+++++.+ ...++ +.++.|++++.++.+|-.. .+   ++...+..+++++.++
T Consensus       231 d~ii~tv~-~~~~~-~~l~~l~~~G~~v~vG~~~~~~~~~~~~~~li~~~~~i~GS  284 (339)
T COG1064         231 DAIIDTVG-PATLE-PSLKALRRGGTLVLVGLPGGGPIPLLPAFLLILKEISIVGS  284 (339)
T ss_pred             cEEEECCC-hhhHH-HHHHHHhcCCEEEEECCCCCcccCCCCHHHhhhcCeEEEEE
Confidence            99999998 77785 7899999999999999873 22   3334444444444443

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=98.42  E-value=9.7e-08  Score=91.42  Aligned_cols=87  Identities=21%  Similarity=0.276  Sum_probs=71.2

Q ss_pred             HhcCCcccc----ccccccHHHHhhcCCCC--CCCCCCCc--cccCCeeeeehhhhcccCcEEEE----ccCCCCccCHh
Q psy4626         260 SLHLPTFDA----HLTELSDEQAKYMGLNK--AGPFKPSY--YSMDGFSVVKLNEVIRTVDIVVT----ATGNKNVVTRE  327 (542)
Q Consensus       260 ~l~L~~lg~----~i~~lt~~~a~~lg~~e--~~p~~a~e--a~mdG~~v~~~~~a~~~~d~~~t----~tg~~~vi~~~  327 (542)
                      ++..+++|+    +|++..+++++++|+..  .||...-+  +.-.|++..+++|+++++|+|+.    +..|+++|+.+
T Consensus        33 ~l~g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~~~~~~~~l~ell~~aDiv~~~~plt~~T~~li~~~  112 (178)
T PF02826_consen   33 ELRGKTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEEGADEFGVEYVSLDELLAQADIVSLHLPLTPETRGLINAE  112 (178)
T ss_dssp             -STTSEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHHHHHHTTEEESSHHHHHHH-SEEEE-SSSSTTTTTSBSHH
T ss_pred             ccCCCEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhhhcccccceeeehhhhcchhhhhhhhhccccccceeeeee
Confidence            445567776    99999999999999953  34555543  35678888999999999999999    66789999999


Q ss_pred             HHhcCCCCcEEEccCCCCc
Q psy4626         328 HMDKMKNGCVVCNMGHSNT  346 (542)
Q Consensus       328 ~~~~mk~gail~n~gh~~~  346 (542)
                      .|++||+|++++|+||+++
T Consensus       113 ~l~~mk~ga~lvN~aRG~~  131 (178)
T PF02826_consen  113 FLAKMKPGAVLVNVARGEL  131 (178)
T ss_dssp             HHHTSTTTEEEEESSSGGG
T ss_pred             eeeccccceEEEeccchhh
Confidence            9999999999999999876

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.41  E-value=1.7e-06  Score=89.09  Aligned_cols=92  Identities=25%  Similarity=0.433  Sum_probs=74.3

Q ss_pred             HHHHHHHHHHhhcCccccCcEEEEEcCCh-hHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCCcEEE
Q psy4626          59 CRESIIDSLKRSTDVMFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVV  137 (542)
Q Consensus        59 ~~~s~~~ai~r~~~~~l~GktVvViG~G~-IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~aDvVi  137 (542)
                      |-.+++..+.+ .+..+.|++|+|+|.|. +|+.++..|...|++|+++++.             ..++.+.++++|+||
T Consensus       142 T~~gii~~L~~-~~i~l~Gk~vvViG~gg~vGkpia~~L~~~gatVtv~~~~-------------t~~L~~~~~~aDIvI  207 (283)
T PRK14192        142 TPAGIMRLLKA-YNIELAGKHAVVVGRSAILGKPMAMMLLNANATVTICHSR-------------TQNLPELVKQADIIV  207 (283)
T ss_pred             cHHHHHHHHHH-cCCCCCCCEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCC-------------chhHHHHhccCCEEE
Confidence            34555555444 46789999999999998 9999999999999999999841             124556678999999


Q ss_pred             EcCCCcccCCHHHHhccCCCeEEEeccCCC
Q psy4626         138 TATGNKNVVTREHMDKMKNGCVVCNMGHSN  167 (542)
Q Consensus       138 ~atG~~~lI~~e~l~~mk~GailvnvG~g~  167 (542)
                      .|+|.++.++.+   .+++|++++++|...
T Consensus       208 ~AtG~~~~v~~~---~lk~gavViDvg~n~  234 (283)
T PRK14192        208 GAVGKPELIKKD---WIKQGAVVVDAGFHP  234 (283)
T ss_pred             EccCCCCcCCHH---HcCCCCEEEEEEEee
Confidence            999988888754   479999999999664

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=98.39  E-value=4.3e-06  Score=86.29  Aligned_cols=227  Identities=17%  Similarity=0.238  Sum_probs=136.5

Q ss_pred             CcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHH-HHhcCCcEEEEc-CC-------------
Q psy4626          77 GKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLN-EVIRTVDIVVTA-TG-------------  141 (542)
Q Consensus        77 GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~-e~l~~aDvVi~a-tG-------------  141 (542)
                      |++++|+|.=.--..+++.|...|++|.++-.+..  ... -.|+...++. +.+.++|++|.= +|             
T Consensus         1 ~~~~~v~ggd~r~~~~~~~l~~~g~~v~~~g~~~~--~~~-~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~i~~~~~~   77 (287)
T TIGR02853         1 GIHIAVIGGDARQLELIRKLEELDAKISLIGFDQL--EDG-FTGAVKCELLELDLTTLDVVILPVPGTSHDGKVATVFSN   77 (287)
T ss_pred             CcEEEEEcccHHHHHHHHHHHHCCCEEEEEecccc--ccc-cccceeecchhhhhccCCEEEECCccccCCceEeccccc
Confidence            67899999888889999999999999999864321  011 1244444444 458999999981 11             


Q ss_pred             CcccCCHHHHhccCCCeEEEeccCCCcccChHhhcCCCcceeeeccceeeEecCCCCEEEEecCCCcccccCCCChhHHH
Q psy4626         142 NKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIVLLAEGRLVNLSCSSLPSFVV  221 (542)
Q Consensus       142 ~~~lI~~e~l~~mk~GailvnvG~g~~eid~~aL~~~~l~v~~~~~~v~~y~~~dg~~I~LLa~GrLvnl~~~thp~~vm  221 (542)
                      .+-.++++.++.++++++ +.+|..+..++. ....+++.+...         .+...+...      |           
T Consensus        78 ~~~~l~~~~l~~~~~~~~-~~~G~~~~~l~~-~a~~~gi~v~~~---------~~~~~va~~------n-----------  129 (287)
T TIGR02853        78 EKVVLTPELLESTKGHCT-IYVGISNPYLEQ-LAADAGVKLIEL---------FERDDVAIY------N-----------  129 (287)
T ss_pred             CCccccHHHHHhcCCCCE-EEEecCCHHHHH-HHHHCCCeEEEE---------EeccceEEE------c-----------
Confidence            111245788999998665 566766655443 444444443321         111111111      1           


Q ss_pred             hhHHHHHHHHHHHHhcCCCCCCCCccccCChhhHHHHHHhcCCcccc----ccccccHHHHhhcCCC----CCCCCCCCc
Q psy4626         222 SITACTQALALIELFNAPSGRYKSDVYLLPKKMDEYVASLHLPTFDA----HLTELSDEQAKYMGLN----KAGPFKPSY  293 (542)
Q Consensus       222 d~sfa~q~la~~~L~~~~~~~~~~gv~~lp~~~d~~VA~l~L~~lg~----~i~~lt~~~a~~lg~~----e~~p~~a~e  293 (542)
                      +.+.+..+++..  .+..    +.              .++.++.++    .+++...+.++.+|+.    ..+|.+..+
T Consensus       130 ~~~~Ae~ai~~a--l~~~----~~--------------~l~gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~~~~~  189 (287)
T TIGR02853       130 SIPTAEGAIMMA--IEHT----DF--------------TIHGSNVMVLGFGRTGMTIARTFSALGARVFVGARSSADLAR  189 (287)
T ss_pred             cHhHHHHHHHHH--HHhc----CC--------------CCCCCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence            112222222211  1110    00              112233332    6777777888888862    223333333


Q ss_pred             cccCCeeee---ehhhhcccCcEEEEccCCCCccCHhHHhcCCCCcEEEccCCCCcccccccccC
Q psy4626         294 YSMDGFSVV---KLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRT  355 (542)
Q Consensus       294 a~mdG~~v~---~~~~a~~~~d~~~t~tg~~~vi~~~~~~~mk~gail~n~gh~~~Ei~~~~l~~  355 (542)
                      +...|+...   .++++++++|+||.++... +++.+.++.||++++++|.+....+.|....++
T Consensus       190 ~~~~g~~~~~~~~l~~~l~~aDiVint~P~~-ii~~~~l~~~k~~aliIDlas~Pg~tdf~~Ak~  253 (287)
T TIGR02853       190 ITEMGLIPFPLNKLEEKVAEIDIVINTIPAL-VLTADVLSKLPKHAVIIDLASKPGGTDFEYAKK  253 (287)
T ss_pred             HHHCCCeeecHHHHHHHhccCCEEEECCChH-HhCHHHHhcCCCCeEEEEeCcCCCCCCHHHHHH
Confidence            333455544   4577899999999988654 789999999999999999999999988754443

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=98.37  E-value=1.3e-06  Score=90.12  Aligned_cols=100  Identities=14%  Similarity=0.150  Sum_probs=75.8

Q ss_pred             HHHHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCCCE-EEEEeCCchhhhhhhcCCceeeCHHH-HhcCCcEEEEc
Q psy4626          62 SIIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCV-IYITEIDPICALQACMDGFSVVKLNE-VIRTVDIVVTA  139 (542)
Q Consensus        62 s~~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga~-Viv~d~dp~r~~~A~~~G~~v~~l~e-~l~~aDvVi~a  139 (542)
                      ..|+++.+.   ...|++|+|+|.|+||..+++.++.+|++ |+++|.++.|+..+...  .+++..+ .-.++|++|+|
T Consensus       133 ~a~~~~~~~---~~~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~--~~i~~~~~~~~g~Dvvid~  207 (308)
T TIGR01202       133 TARHAVAGA---EVKVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGY--EVLDPEKDPRRDYRAIYDA  207 (308)
T ss_pred             HHHHHHHhc---ccCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhc--cccChhhccCCCCCEEEEC
Confidence            346666553   23688999999999999999999999996 66678888777655433  2333322 22468999999


Q ss_pred             CCCcccCCHHHHhccCCCeEEEeccCCC
Q psy4626         140 TGNKNVVTREHMDKMKNGCVVCNMGHSN  167 (542)
Q Consensus       140 tG~~~lI~~e~l~~mk~GailvnvG~g~  167 (542)
                      +|....++ +.++.+++++.++.+|...
T Consensus       208 ~G~~~~~~-~~~~~l~~~G~iv~~G~~~  234 (308)
T TIGR01202       208 SGDPSLID-TLVRRLAKGGEIVLAGFYT  234 (308)
T ss_pred             CCCHHHHH-HHHHhhhcCcEEEEEeecC
Confidence            99876664 7899999999999998653

>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF)

Probab=98.36  E-value=3e-06  Score=80.23  Aligned_cols=92  Identities=32%  Similarity=0.461  Sum_probs=66.3

Q ss_pred             HHHHHHHHHHHhhcCccccCcEEEEEcCCh-hHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCCcEE
Q psy4626          58 MCRESIIDSLKRSTDVMFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIV  136 (542)
Q Consensus        58 g~~~s~~~ai~r~~~~~l~GktVvViG~G~-IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~aDvV  136 (542)
                      .+-+++++-+.+ .+..+.||+|+|+|-+. +|+.++..|...|+.|++++..             ..++++.++.||+|
T Consensus        18 cTp~aii~lL~~-~~~~l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~-------------T~~l~~~~~~ADIV   83 (160)
T PF02882_consen   18 CTPLAIIELLEY-YGIDLEGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSK-------------TKNLQEITRRADIV   83 (160)
T ss_dssp             HHHHHHHHHHHH-TT-STTT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TT-------------SSSHHHHHTTSSEE
T ss_pred             CCHHHHHHHHHh-cCCCCCCCEEEEECCcCCCChHHHHHHHhCCCeEEeccCC-------------CCcccceeeeccEE
Confidence            455667765544 56789999999999985 8999999999999999999732             24567778999999


Q ss_pred             EEcCCCcccCCHHHHhccCCCeEEEeccCC
Q psy4626         137 VTATGNKNVVTREHMDKMKNGCVVCNMGHS  166 (542)
Q Consensus       137 i~atG~~~lI~~e~l~~mk~GailvnvG~g  166 (542)
                      |.+.|.+++|..+   .+|+|++++++|..
T Consensus        84 Vsa~G~~~~i~~~---~ik~gavVIDvG~~  110 (160)
T PF02882_consen   84 VSAVGKPNLIKAD---WIKPGAVVIDVGIN  110 (160)
T ss_dssp             EE-SSSTT-B-GG---GS-TTEEEEE--CE
T ss_pred             eeeeccccccccc---cccCCcEEEecCCc
Confidence            9999999999754   57999999999964

Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....

>PLN02178 cinnamyl-alcohol dehydrogenase

Probab=98.36  E-value=3.4e-06  Score=89.82  Aligned_cols=144  Identities=12%  Similarity=0.127  Sum_probs=96.3

Q ss_pred             HHHHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchh-hhhhhcCCce-eeCH------HHHhcCC
Q psy4626          62 SIIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPIC-ALQACMDGFS-VVKL------NEVIRTV  133 (542)
Q Consensus        62 s~~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r-~~~A~~~G~~-v~~l------~e~l~~a  133 (542)
                      ..|+++.+.......|++|+|.|.|++|..+++.++.+|++|++++.++.+ ...+...|++ +++.      .+...++
T Consensus       164 ta~~al~~~~~~~~~g~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~~~~~~~~a~~lGa~~~i~~~~~~~v~~~~~~~  243 (375)
T PLN02178        164 TVYSPMKYYGMTKESGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRSSEKEREAIDRLGADSFLVTTDSQKMKEAVGTM  243 (375)
T ss_pred             HHHHHHHHhCCCCCCCCEEEEEcccHHHHHHHHHHHHcCCeEEEEeCChHHhHHHHHhCCCcEEEcCcCHHHHHHhhCCC
Confidence            345555443222247999999999999999999999999999999876554 4445567765 3221      1223468


Q ss_pred             cEEEEcCCCcccCCHHHHhccCCCeEEEeccCCC--cccChHhhcCCCcceeeeccce-eeEecCCCCEEEEecCCCccc
Q psy4626         134 DIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSN--TEIDVNSLRTPDLTWEKVRSQV-DHVIWPDGKRIVLLAEGRLVN  210 (542)
Q Consensus       134 DvVi~atG~~~lI~~e~l~~mk~GailvnvG~g~--~eid~~aL~~~~l~v~~~~~~v-~~y~~~dg~~I~LLa~GrLvn  210 (542)
                      |++++++|....+. +.++.+++++.++.+|...  .+++...+..+++++.++.... ..+    .+.+.++++|++..
T Consensus       244 D~vid~~G~~~~~~-~~~~~l~~~G~iv~vG~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~----~~~~~l~~~g~i~~  318 (375)
T PLN02178        244 DFIIDTVSAEHALL-PLFSLLKVSGKLVALGLPEKPLDLPIFPLVLGRKMVGGSQIGGMKET----QEMLEFCAKHKIVS  318 (375)
T ss_pred             cEEEECCCcHHHHH-HHHHhhcCCCEEEEEccCCCCCccCHHHHHhCCeEEEEeCccCHHHH----HHHHHHHHhCCCcc
Confidence            99999999765564 6899999999999998643  3556665555555555433211 111    23556777777653

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=98.34  E-value=1.4e-06  Score=82.05  Aligned_cols=90  Identities=17%  Similarity=0.274  Sum_probs=68.5

Q ss_pred             cEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCcee-eCHHHHhcCCcEEEEcCCCcccCC---HH--HH
Q psy4626          78 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV-VKLNEVIRTVDIVVTATGNKNVVT---RE--HM  151 (542)
Q Consensus        78 ktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v-~~l~e~l~~aDvVi~atG~~~lI~---~e--~l  151 (542)
                      ++|++||.|.+|..+|+.|...|.+|++||+++.+.......|... .++.++++.+|+|+.+..+...+.   ..  .+
T Consensus         2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~g~~~~~s~~e~~~~~dvvi~~v~~~~~v~~v~~~~~i~   81 (163)
T PF03446_consen    2 MKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPEKAEALAEAGAEVADSPAEAAEQADVVILCVPDDDAVEAVLFGENIL   81 (163)
T ss_dssp             BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHHTTEEEESSHHHHHHHBSEEEE-SSSHHHHHHHHHCTTHG
T ss_pred             CEEEEEchHHHHHHHHHHHHhcCCeEEeeccchhhhhhhHHhhhhhhhhhhhHhhcccceEeecccchhhhhhhhhhHHh
Confidence            4899999999999999999999999999999998887777778764 578899999999999875533332   12  46


Q ss_pred             hccCCCeEEEeccCCC
Q psy4626         152 DKMKNGCVVCNMGHSN  167 (542)
Q Consensus       152 ~~mk~GailvnvG~g~  167 (542)
                      +.+++|.++++++..+
T Consensus        82 ~~l~~g~iiid~sT~~   97 (163)
T PF03446_consen   82 AGLRPGKIIIDMSTIS   97 (163)
T ss_dssp             GGS-TTEEEEE-SS--
T ss_pred             hccccceEEEecCCcc
Confidence            6789999999998764

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>cd08230 glucose_DH Glucose dehydrogenase

Probab=98.33  E-value=1.8e-06  Score=90.50  Aligned_cols=92  Identities=20%  Similarity=0.242  Sum_probs=75.1

Q ss_pred             ccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeC---CchhhhhhhcCCceeeCHH-----H--HhcCCcEEEEcCCCcc
Q psy4626          75 FGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEI---DPICALQACMDGFSVVKLN-----E--VIRTVDIVVTATGNKN  144 (542)
Q Consensus        75 l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~---dp~r~~~A~~~G~~v~~l~-----e--~l~~aDvVi~atG~~~  144 (542)
                      ..|++|+|+|.|.+|..+++.++..|++|+++++   ++.|...+...|+..++..     +  ...++|+||+++|...
T Consensus       171 ~~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~~v~~~~~~~~~~~~~~~~d~vid~~g~~~  250 (355)
T cd08230         171 WNPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGATYVNSSKTPVAEVKLVGEFDLIIEATGVPP  250 (355)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEecCCccchhhhhhcCCCCEEEECcCCHH
Confidence            4799999999999999999999999999999987   5777777777887654321     1  1246899999999766


Q ss_pred             cCCHHHHhccCCCeEEEeccCCC
Q psy4626         145 VVTREHMDKMKNGCVVCNMGHSN  167 (542)
Q Consensus       145 lI~~e~l~~mk~GailvnvG~g~  167 (542)
                      .+. +.++.+++++.++.+|...
T Consensus       251 ~~~-~~~~~l~~~G~~v~~G~~~  272 (355)
T cd08230         251 LAF-EALPALAPNGVVILFGVPG  272 (355)
T ss_pred             HHH-HHHHHccCCcEEEEEecCC
Confidence            664 7899999999999988653

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

Probab=98.33  E-value=2.1e-06  Score=90.71  Aligned_cols=111  Identities=17%  Similarity=0.195  Sum_probs=83.3

Q ss_pred             cccCcEEEEEcCChhHHHHHHHHHhCCC-EEEEEeCCchhhhhhhcCCce-eeCH-----HHHh-----cCCcEEEEcCC
Q psy4626          74 MFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMDGFS-VVKL-----NEVI-----RTVDIVVTATG  141 (542)
Q Consensus        74 ~l~GktVvViG~G~IG~~vA~~l~~~Ga-~Viv~d~dp~r~~~A~~~G~~-v~~l-----~e~l-----~~aDvVi~atG  141 (542)
                      ...|++|+|.|.|++|..+++.++.+|+ +|++++.++.|+..+...|++ +++.     .+.+     .++|++|+|+|
T Consensus       189 i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~i~~~~~~g~d~vid~~G  268 (371)
T cd08281         189 VRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARELGATATVNAGDPNAVEQVRELTGGGVDYAFEMAG  268 (371)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHcCCceEeCCCchhHHHHHHHHhCCCCCEEEECCC
Confidence            4579999999999999999999999999 699999999998888778874 3321     1111     25899999998


Q ss_pred             CcccCCHHHHhccCCCeEEEeccCCC----cccChHhhcCCCcceeee
Q psy4626         142 NKNVVTREHMDKMKNGCVVCNMGHSN----TEIDVNSLRTPDLTWEKV  185 (542)
Q Consensus       142 ~~~lI~~e~l~~mk~GailvnvG~g~----~eid~~aL~~~~l~v~~~  185 (542)
                      ....+. ..++.+++++.++.+|...    ..++...+..+++++.++
T Consensus       269 ~~~~~~-~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~i~g~  315 (371)
T cd08281         269 SVPALE-TAYEITRRGGTTVTAGLPDPEARLSVPALSLVAEERTLKGS  315 (371)
T ss_pred             ChHHHH-HHHHHHhcCCEEEEEccCCCCceeeecHHHHhhcCCEEEEE
Confidence            766664 6889999999999988642    234444454455555443

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=98.33  E-value=3.9e-06  Score=80.02  Aligned_cols=79  Identities=28%  Similarity=0.445  Sum_probs=67.3

Q ss_pred             ccccCcEEEEEcCCh-hHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCCcEEEEcCCCcccCCHHHH
Q psy4626          73 VMFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHM  151 (542)
Q Consensus        73 ~~l~GktVvViG~G~-IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~aDvVi~atG~~~lI~~e~l  151 (542)
                      ..+.|++|+|+|+|. +|..+|+.|...|++|++++++.             .++.+.+.++|+||.++|.+++++++. 
T Consensus        40 ~~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~-------------~~l~~~l~~aDiVIsat~~~~ii~~~~-  105 (168)
T cd01080          40 IDLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKT-------------KNLKEHTKQADIVIVAVGKPGLVKGDM-  105 (168)
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCc-------------hhHHHHHhhCCEEEEcCCCCceecHHH-
Confidence            468999999999998 59999999999999999998642             245567899999999999988998764 


Q ss_pred             hccCCCeEEEeccCCC
Q psy4626         152 DKMKNGCVVCNMGHSN  167 (542)
Q Consensus       152 ~~mk~GailvnvG~g~  167 (542)
                        ++++.+++++|...
T Consensus       106 --~~~~~viIDla~pr  119 (168)
T cd01080         106 --VKPGAVVIDVGINR  119 (168)
T ss_pred             --ccCCeEEEEccCCC
Confidence              57899999999753

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.31  E-value=2.5e-06  Score=88.18  Aligned_cols=90  Identities=24%  Similarity=0.350  Sum_probs=73.9

Q ss_pred             HHHHHHHHHhhcCccccCcEEEEEcCC-hhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCCcEEEE
Q psy4626          60 RESIIDSLKRSTDVMFGGKQVVLCGYG-EVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVT  138 (542)
Q Consensus        60 ~~s~~~ai~r~~~~~l~GktVvViG~G-~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~aDvVi~  138 (542)
                      -.+++.- .+..+..+.||+|+|+|.| .+|+.+|..|...|++|++|+...             .++.++++.||+||.
T Consensus       143 p~aii~l-L~~~~i~l~Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t-------------~~l~e~~~~ADIVIs  208 (301)
T PRK14194        143 PSGCLRL-LEDTCGDLTGKHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRS-------------TDAKALCRQADIVVA  208 (301)
T ss_pred             HHHHHHH-HHHhCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEECCCC-------------CCHHHHHhcCCEEEE
Confidence            3444443 3445678999999999996 999999999999999999997532             157788899999999


Q ss_pred             cCCCcccCCHHHHhccCCCeEEEeccCC
Q psy4626         139 ATGNKNVVTREHMDKMKNGCVVCNMGHS  166 (542)
Q Consensus       139 atG~~~lI~~e~l~~mk~GailvnvG~g  166 (542)
                      +.|.++.+....   +|+|++++++|..
T Consensus       209 avg~~~~v~~~~---ik~GaiVIDvgin  233 (301)
T PRK14194        209 AVGRPRLIDADW---LKPGAVVIDVGIN  233 (301)
T ss_pred             ecCChhcccHhh---ccCCcEEEEeccc
Confidence            999999997543   8999999999953

>PRK05479 ketol-acid reductoisomerase; Provisional

Probab=98.31  E-value=1.8e-06  Score=90.61  Aligned_cols=92  Identities=23%  Similarity=0.408  Sum_probs=72.3

Q ss_pred             cccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhh-hhhhcCCceeeCHHHHhcCCcEEEEcCCC---cccCCHH
Q psy4626          74 MFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICA-LQACMDGFSVVKLNEVIRTVDIVVTATGN---KNVVTRE  149 (542)
Q Consensus        74 ~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~-~~A~~~G~~v~~l~e~l~~aDvVi~atG~---~~lI~~e  149 (542)
                      .+.|++|+|||+|.+|..+|+.|+.+|.+|+++++++.+. ..+...|+.+.+.+++++.+|+|+.+...   ..+++.+
T Consensus        14 ~L~gktIgIIG~GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~~~A~~~G~~~~s~~eaa~~ADVVvLaVPd~~~~~V~~~~   93 (330)
T PRK05479         14 LIKGKKVAIIGYGSQGHAHALNLRDSGVDVVVGLREGSKSWKKAEADGFEVLTVAEAAKWADVIMILLPDEVQAEVYEEE   93 (330)
T ss_pred             hhCCCEEEEEeeHHHHHHHHHHHHHCCCEEEEEECCchhhHHHHHHCCCeeCCHHHHHhcCCEEEEcCCHHHHHHHHHHH
Confidence            4689999999999999999999999999999987664443 34556788888889999999999998642   3344345


Q ss_pred             HHhccCCCeEEEeccCC
Q psy4626         150 HMDKMKNGCVVCNMGHS  166 (542)
Q Consensus       150 ~l~~mk~GailvnvG~g  166 (542)
                      .+..|++|.++ ..++|
T Consensus        94 I~~~Lk~g~iL-~~a~G  109 (330)
T PRK05479         94 IEPNLKEGAAL-AFAHG  109 (330)
T ss_pred             HHhcCCCCCEE-EECCC
Confidence            66788999888 44444

>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]

Probab=98.30  E-value=1.4e-06  Score=90.53  Aligned_cols=139  Identities=21%  Similarity=0.244  Sum_probs=99.3

Q ss_pred             ccccCcEEEEEcCChhHHHHHHHHHhCCC-EEEEEeCCchhhhhhhcCCce-eeCHH----------HHhc-CCcEEEEc
Q psy4626          73 VMFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMDGFS-VVKLN----------EVIR-TVDIVVTA  139 (542)
Q Consensus        73 ~~l~GktVvViG~G~IG~~vA~~l~~~Ga-~Viv~d~dp~r~~~A~~~G~~-v~~l~----------e~l~-~aDvVi~a  139 (542)
                      ...+|.+|+|+|+|-+|+.+.+.++..|+ +++++|++|.|+..|.+.|+. +++..          ++.. ++|..|+|
T Consensus       182 ~v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~fGAT~~vn~~~~~~vv~~i~~~T~gG~d~~~e~  261 (366)
T COG1062         182 KVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKFGATHFVNPKEVDDVVEAIVELTDGGADYAFEC  261 (366)
T ss_pred             cCCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhcCCceeecchhhhhHHHHHHHhcCCCCCEEEEc
Confidence            45689999999999999999999999999 899999999999999999985 44432          1223 89999999


Q ss_pred             CCCcccCCHHHHhccCCCeEEEeccCCC--cccChHhhc--CCCcceeeeccc--eeeEecCCCCEEEEecCCCcccccC
Q psy4626         140 TGNKNVVTREHMDKMKNGCVVCNMGHSN--TEIDVNSLR--TPDLTWEKVRSQ--VDHVIWPDGKRIVLLAEGRLVNLSC  213 (542)
Q Consensus       140 tG~~~lI~~e~l~~mk~GailvnvG~g~--~eid~~aL~--~~~l~v~~~~~~--v~~y~~~dg~~I~LLa~GrLvnl~~  213 (542)
                      +|+...+. +.|+...+++..+.+|..+  .++++..+.  .+ -.++++...  ..++.+  ++-+.+--+|+++.-..
T Consensus       262 ~G~~~~~~-~al~~~~~~G~~v~iGv~~~~~~i~~~~~~lv~g-r~~~Gs~~G~~~p~~di--P~lv~~y~~Gkl~~d~l  337 (366)
T COG1062         262 VGNVEVMR-QALEATHRGGTSVIIGVAGAGQEISTRPFQLVTG-RVWKGSAFGGARPRSDI--PRLVDLYMAGKLPLDRL  337 (366)
T ss_pred             cCCHHHHH-HHHHHHhcCCeEEEEecCCCCceeecChHHeecc-ceEEEEeecCCccccch--hHHHHHHHcCCCchhHH
Confidence            99998884 8899998899999888874  566655333  22 233333211  112222  23444555677665443


Q ss_pred             CC
Q psy4626         214 SS  215 (542)
Q Consensus       214 ~t  215 (542)
                      .|
T Consensus       338 vt  339 (366)
T COG1062         338 VT  339 (366)
T ss_pred             hh
Confidence            33

>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.29  E-value=4.7e-06  Score=85.63  Aligned_cols=90  Identities=22%  Similarity=0.351  Sum_probs=73.4

Q ss_pred             HHHHHHHHHhhcCccccCcEEEEEcCC-hhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCCcEEEE
Q psy4626          60 RESIIDSLKRSTDVMFGGKQVVLCGYG-EVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVT  138 (542)
Q Consensus        60 ~~s~~~ai~r~~~~~l~GktVvViG~G-~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~aDvVi~  138 (542)
                      -.+++.- .+..+..+.|++|+|+|-| .+|+.+|..|...||+|++++...             -++.+.++.||+||.
T Consensus       141 p~avi~l-L~~~~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~t-------------~~l~~~~~~ADIvV~  206 (285)
T PRK14191        141 PMGVMRL-LKHYHIEIKGKDVVIIGASNIVGKPLAMLMLNAGASVSVCHILT-------------KDLSFYTQNADIVCV  206 (285)
T ss_pred             HHHHHHH-HHHhCCCCCCCEEEEECCCchhHHHHHHHHHHCCCEEEEEeCCc-------------HHHHHHHHhCCEEEE
Confidence            4445543 3444678999999999999 789999999999999999997321             235677899999999


Q ss_pred             cCCCcccCCHHHHhccCCCeEEEeccCC
Q psy4626         139 ATGNKNVVTREHMDKMKNGCVVCNMGHS  166 (542)
Q Consensus       139 atG~~~lI~~e~l~~mk~GailvnvG~g  166 (542)
                      ++|.+++++.+.   +|+|++++++|..
T Consensus       207 AvG~p~~i~~~~---vk~GavVIDvGi~  231 (285)
T PRK14191        207 GVGKPDLIKASM---VKKGAVVVDIGIN  231 (285)
T ss_pred             ecCCCCcCCHHH---cCCCcEEEEeecc
Confidence            999999998665   5999999999963

>PLN02586 probable cinnamyl alcohol dehydrogenase

Probab=98.28  E-value=6.6e-06  Score=86.89  Aligned_cols=113  Identities=14%  Similarity=0.176  Sum_probs=80.7

Q ss_pred             HHHHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhh-hhhcCCce-eeCH------HHHhcCC
Q psy4626          62 SIIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICAL-QACMDGFS-VVKL------NEVIRTV  133 (542)
Q Consensus        62 s~~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~-~A~~~G~~-v~~l------~e~l~~a  133 (542)
                      ..|+++.+.. ....|++|+|.|.|+||..+++.++.+|++|++++.++.+.. .+...|++ +++.      .+...++
T Consensus       170 ta~~al~~~~-~~~~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~  248 (360)
T PLN02586        170 TVYSPMKYYG-MTEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSNKEDEAINRLGADSFLVSTDPEKMKAAIGTM  248 (360)
T ss_pred             HHHHHHHHhc-ccCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcchhhhHHHhCCCcEEEcCCCHHHHHhhcCCC
Confidence            3455554432 234799999999999999999999999999998887766543 33456764 2221      1223468


Q ss_pred             cEEEEcCCCcccCCHHHHhccCCCeEEEeccCCC--cccChHhhc
Q psy4626         134 DIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSN--TEIDVNSLR  176 (542)
Q Consensus       134 DvVi~atG~~~lI~~e~l~~mk~GailvnvG~g~--~eid~~aL~  176 (542)
                      |++++++|....+. +.++.+++++.++.+|...  .++++..+.
T Consensus       249 D~vid~~g~~~~~~-~~~~~l~~~G~iv~vG~~~~~~~~~~~~~~  292 (360)
T PLN02586        249 DYIIDTVSAVHALG-PLLGLLKVNGKLITLGLPEKPLELPIFPLV  292 (360)
T ss_pred             CEEEECCCCHHHHH-HHHHHhcCCcEEEEeCCCCCCCccCHHHHH
Confidence            99999999766664 6899999999999998642  345554443

>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.28  E-value=5.2e-06  Score=85.29  Aligned_cols=91  Identities=23%  Similarity=0.379  Sum_probs=75.1

Q ss_pred             HHHHHHHHHHhhcCccccCcEEEEEcCCh-hHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCCcEEE
Q psy4626          59 CRESIIDSLKRSTDVMFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVV  137 (542)
Q Consensus        59 ~~~s~~~ai~r~~~~~l~GktVvViG~G~-IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~aDvVi  137 (542)
                      |-.++++-+.+ .+..+.|++++|+|.|. +|+.++..|...||+|++++..             .-++.+.++.||++|
T Consensus       142 Tp~av~~ll~~-~~i~l~Gk~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~-------------T~~l~~~~~~ADIvi  207 (285)
T PRK10792        142 TPRGIMTLLER-YGIDTYGLNAVVVGASNIVGRPMSLELLLAGCTVTVCHRF-------------TKNLRHHVRNADLLV  207 (285)
T ss_pred             CHHHHHHHHHH-cCCCCCCCEEEEECCCcccHHHHHHHHHHCCCeEEEEECC-------------CCCHHHHHhhCCEEE
Confidence            34555554443 45788999999999998 8999999999999999999732             235777889999999


Q ss_pred             EcCCCcccCCHHHHhccCCCeEEEeccCC
Q psy4626         138 TATGNKNVVTREHMDKMKNGCVVCNMGHS  166 (542)
Q Consensus       138 ~atG~~~lI~~e~l~~mk~GailvnvG~g  166 (542)
                      .++|.++++..   +.+|+|++++++|..
T Consensus       208 ~avG~p~~v~~---~~vk~gavVIDvGin  233 (285)
T PRK10792        208 VAVGKPGFIPG---EWIKPGAIVIDVGIN  233 (285)
T ss_pred             EcCCCcccccH---HHcCCCcEEEEcccc
Confidence            99999999985   557999999999943

>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.28  E-value=4.2e-06  Score=86.02  Aligned_cols=91  Identities=25%  Similarity=0.400  Sum_probs=75.1

Q ss_pred             HHHHHHHHHHhhcCccccCcEEEEEcCCh-hHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCCcEEE
Q psy4626          59 CRESIIDSLKRSTDVMFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVV  137 (542)
Q Consensus        59 ~~~s~~~ai~r~~~~~l~GktVvViG~G~-IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~aDvVi  137 (542)
                      |-.+++.-+.+ .+..+.|++|+|+|.+. +|+.++..|...||+|++++..             .-++.+.+++||+||
T Consensus       147 Tp~av~~ll~~-~~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVtv~hs~-------------T~~l~~~~~~ADIvv  212 (287)
T PRK14176        147 TPHGVIRALEE-YGVDIEGKNAVIVGHSNVVGKPMAAMLLNRNATVSVCHVF-------------TDDLKKYTLDADILV  212 (287)
T ss_pred             cHHHHHHHHHH-cCCCCCCCEEEEECCCcccHHHHHHHHHHCCCEEEEEecc-------------CCCHHHHHhhCCEEE
Confidence            34555554443 46788999999999998 8999999999999999999831             235677889999999


Q ss_pred             EcCCCcccCCHHHHhccCCCeEEEeccCC
Q psy4626         138 TATGNKNVVTREHMDKMKNGCVVCNMGHS  166 (542)
Q Consensus       138 ~atG~~~lI~~e~l~~mk~GailvnvG~g  166 (542)
                      .++|.+++++.+   .+|+|++++++|..
T Consensus       213 ~AvG~p~~i~~~---~vk~gavVIDvGin  238 (287)
T PRK14176        213 VATGVKHLIKAD---MVKEGAVIFDVGIT  238 (287)
T ss_pred             EccCCccccCHH---HcCCCcEEEEeccc
Confidence            999999999855   57999999999963

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=98.27  E-value=4.4e-06  Score=79.22  Aligned_cols=91  Identities=30%  Similarity=0.417  Sum_probs=67.6

Q ss_pred             cccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCcee--e-------------------------CH
Q psy4626          74 MFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV--V-------------------------KL  126 (542)
Q Consensus        74 ~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v--~-------------------------~l  126 (542)
                      .++..+|+|+|.|.+|++.++.|+++|++|++.|..+.+..+....+...  +                         .+
T Consensus        17 ~~~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~f   96 (168)
T PF01262_consen   17 GVPPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERPERLRQLESLGAYFIEVDYEDHLERKDFDKADYYEHPESYESNF   96 (168)
T ss_dssp             EE-T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTTEESEETTTTTTTSB-CCHHHCHHHCCHHHHHH
T ss_pred             CCCCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCHHHHHhhhcccCceEEEcccccccccccchhhhhHHHHHhHHHH
Confidence            45678999999999999999999999999999999887765554444331  1                         12


Q ss_pred             HHHhcCCcEEEEc-----CCCcccCCHHHHhccCCCeEEEecc
Q psy4626         127 NEVIRTVDIVVTA-----TGNKNVVTREHMDKMKNGCVVCNMG  164 (542)
Q Consensus       127 ~e~l~~aDvVi~a-----tG~~~lI~~e~l~~mk~GailvnvG  164 (542)
                      .+.++.+|+||.+     ...+.+++.+.++.||+|.+++.++
T Consensus        97 ~~~i~~~d~vI~~~~~~~~~~P~lvt~~~~~~m~~gsvIvDis  139 (168)
T PF01262_consen   97 AEFIAPADIVIGNGLYWGKRAPRLVTEEMVKSMKPGSVIVDIS  139 (168)
T ss_dssp             HHHHHH-SEEEEHHHBTTSS---SBEHHHHHTSSTTEEEEETT
T ss_pred             HHHHhhCcEEeeecccCCCCCCEEEEhHHhhccCCCceEEEEE
Confidence            3456789999974     2467899999999999999999987

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase

Probab=98.26  E-value=7e-06  Score=85.92  Aligned_cols=108  Identities=14%  Similarity=0.133  Sum_probs=77.5

Q ss_pred             ccCcEEEEEcCChhHHHHHHHHHh-CC-CEEEEEeCCchhhhhhhcCCceeeCHHHHh--cCCcEEEEcCC---CcccCC
Q psy4626          75 FGGKQVVLCGYGEVGKGCCQSLKG-LG-CVIYITEIDPICALQACMDGFSVVKLNEVI--RTVDIVVTATG---NKNVVT  147 (542)
Q Consensus        75 l~GktVvViG~G~IG~~vA~~l~~-~G-a~Viv~d~dp~r~~~A~~~G~~v~~l~e~l--~~aDvVi~atG---~~~lI~  147 (542)
                      .+|++|+|+|.|+||+.+++.++. +| ++|+++++++.|+..+...+.... .++..  .++|++|+++|   +...+.
T Consensus       162 ~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~~~~~~~-~~~~~~~~g~d~viD~~G~~~~~~~~~  240 (341)
T cd08237         162 KDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSFADETYL-IDDIPEDLAVDHAFECVGGRGSQSAIN  240 (341)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhhcCceee-hhhhhhccCCcEEEECCCCCccHHHHH
Confidence            469999999999999999998885 55 589999999988877665554321 22222  25899999998   344554


Q ss_pred             HHHHhccCCCeEEEeccCCC--cccChHhhcCCCcceee
Q psy4626         148 REHMDKMKNGCVVCNMGHSN--TEIDVNSLRTPDLTWEK  184 (542)
Q Consensus       148 ~e~l~~mk~GailvnvG~g~--~eid~~aL~~~~l~v~~  184 (542)
                       +.++.+++++.++.+|...  .+++...+..+++++.+
T Consensus       241 -~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~k~~~i~g  278 (341)
T cd08237         241 -QIIDYIRPQGTIGLMGVSEYPVPINTRMVLEKGLTLVG  278 (341)
T ss_pred             -HHHHhCcCCcEEEEEeecCCCcccCHHHHhhCceEEEE
Confidence             7899999999999988643  34454444444444443

NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (

>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein

Probab=98.23  E-value=8.7e-06  Score=84.87  Aligned_cols=119  Identities=13%  Similarity=0.104  Sum_probs=87.5

Q ss_pred             HHHHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce-eeCHHH-HhcCCcEEEEc
Q psy4626          62 SIIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVKLNE-VIRTVDIVVTA  139 (542)
Q Consensus        62 s~~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~-v~~l~e-~l~~aDvVi~a  139 (542)
                      ..|+++.++  ...+|++|+|.|.|.+|..+++.++.+|++|++++.++.+...+...|++ +++..+ .-...|+++++
T Consensus       153 ta~~~~~~~--~~~~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~~Ga~~vi~~~~~~~~~~d~~i~~  230 (329)
T TIGR02822       153 IGYRALLRA--SLPPGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALALGAASAGGAYDTPPEPLDAAILF  230 (329)
T ss_pred             HHHHHHHhc--CCCCCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHhCCceeccccccCcccceEEEEC
Confidence            346666543  34579999999999999999999999999999999999998888888986 333221 12457988888


Q ss_pred             CCCcccCCHHHHhccCCCeEEEeccCC-C--cccChHhhcCCCccee
Q psy4626         140 TGNKNVVTREHMDKMKNGCVVCNMGHS-N--TEIDVNSLRTPDLTWE  183 (542)
Q Consensus       140 tG~~~lI~~e~l~~mk~GailvnvG~g-~--~eid~~aL~~~~l~v~  183 (542)
                      +|....+. ..++.+++++.++.+|.. .  ..++...+..+++++.
T Consensus       231 ~~~~~~~~-~~~~~l~~~G~~v~~G~~~~~~~~~~~~~~~~~~~~i~  276 (329)
T TIGR02822       231 APAGGLVP-PALEALDRGGVLAVAGIHLTDTPPLNYQRHLFYERQIR  276 (329)
T ss_pred             CCcHHHHH-HHHHhhCCCcEEEEEeccCccCCCCCHHHHhhCCcEEE
Confidence            87766664 789999999999999964 2  2345444433334333

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.

>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=98.20  E-value=9.9e-06  Score=75.08  Aligned_cols=91  Identities=23%  Similarity=0.368  Sum_probs=73.3

Q ss_pred             HHHHHHHHHhhcCccccCcEEEEEcCCh-hHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCCcEEEE
Q psy4626          60 RESIIDSLKRSTDVMFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVT  138 (542)
Q Consensus        60 ~~s~~~ai~r~~~~~l~GktVvViG~G~-IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~aDvVi~  138 (542)
                      -++++.-++ ..+..+.|++|+|+|-+. +|+.++..|...|++|++++.+.             .++++.++.||+||.
T Consensus        12 ~~a~~~ll~-~~~~~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t-------------~~l~~~v~~ADIVvs   77 (140)
T cd05212          12 AKAVKELLN-KEGVRLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKT-------------IQLQSKVHDADVVVV   77 (140)
T ss_pred             HHHHHHHHH-HcCCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCC-------------cCHHHHHhhCCEEEE
Confidence            344444433 346789999999999976 69999999999999999998432             256778899999999


Q ss_pred             cCCCcccCCHHHHhccCCCeEEEeccCCC
Q psy4626         139 ATGNKNVVTREHMDKMKNGCVVCNMGHSN  167 (542)
Q Consensus       139 atG~~~lI~~e~l~~mk~GailvnvG~g~  167 (542)
                      ++|.+++++.+   .+|+|++++++|...
T Consensus        78 Atg~~~~i~~~---~ikpGa~Vidvg~~~  103 (140)
T cd05212          78 GSPKPEKVPTE---WIKPGATVINCSPTK  103 (140)
T ss_pred             ecCCCCccCHH---HcCCCCEEEEcCCCc
Confidence            99999999754   489999999988643

NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional

>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.19  E-value=6.7e-06  Score=85.09  Aligned_cols=89  Identities=27%  Similarity=0.330  Sum_probs=72.7

Q ss_pred             HHHHHHHHHhhcCccccCcEEEEEc-CChhHHHHHHHHHhCCCEEEEEe-CCchhhhhhhcCCceeeCHHHHhcCCcEEE
Q psy4626          60 RESIIDSLKRSTDVMFGGKQVVLCG-YGEVGKGCCQSLKGLGCVIYITE-IDPICALQACMDGFSVVKLNEVIRTVDIVV  137 (542)
Q Consensus        60 ~~s~~~ai~r~~~~~l~GktVvViG-~G~IG~~vA~~l~~~Ga~Viv~d-~dp~r~~~A~~~G~~v~~l~e~l~~aDvVi  137 (542)
                      -.+++.-+ +..+..+.||+|+|+| .|.+|+.+|..|...|+.|++|+ +++              +++++++.||+||
T Consensus       142 p~ai~~ll-~~~~i~~~Gk~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT~--------------~l~e~~~~ADIVI  206 (296)
T PRK14188        142 PLGCMMLL-RRVHGDLSGLNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRTR--------------DLPAVCRRADILV  206 (296)
T ss_pred             HHHHHHHH-HHhCCCCCCCEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCCC--------------CHHHHHhcCCEEE
Confidence            45555433 3345678999999999 89999999999999999999996 332              3577888999999


Q ss_pred             EcCCCcccCCHHHHhccCCCeEEEeccCC
Q psy4626         138 TATGNKNVVTREHMDKMKNGCVVCNMGHS  166 (542)
Q Consensus       138 ~atG~~~lI~~e~l~~mk~GailvnvG~g  166 (542)
                      .++|.++.+...   .+++|++++++|..
T Consensus       207 savg~~~~v~~~---~lk~GavVIDvGin  232 (296)
T PRK14188        207 AAVGRPEMVKGD---WIKPGATVIDVGIN  232 (296)
T ss_pred             EecCChhhcchh---eecCCCEEEEcCCc
Confidence            999999988743   38999999999964

>PRK12480 D-lactate dehydrogenase; Provisional

Probab=98.18  E-value=1e-05  Score=85.02  Aligned_cols=186  Identities=13%  Similarity=0.180  Sum_probs=110.2

Q ss_pred             HHhcCCcEEEEcCCCcccCCHHHHhccC--CCeEEEeccCCCcccChHhhcCCCcceeeeccceeeEecCCCCEEEEecC
Q psy4626         128 EVIRTVDIVVTATGNKNVVTREHMDKMK--NGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIVLLAE  205 (542)
Q Consensus       128 e~l~~aDvVi~atG~~~lI~~e~l~~mk--~GailvnvG~g~~eid~~aL~~~~l~v~~~~~~v~~y~~~dg~~I~LLa~  205 (542)
                      +.++++|+++.-..+  -++++.++.++  +-..+...|.|-+.+|++++.++++.+..+..    |             
T Consensus        41 ~~~~~~d~ii~~~~~--~~~~~~l~~~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~~----~-------------  101 (330)
T PRK12480         41 DQLKDYDGVTTMQFG--KLENDVYPKLESYGIKQIAQRTAGFDMYDLDLAKKHNIVISNVPS----Y-------------  101 (330)
T ss_pred             HHhCCCCEEEEecCC--CCCHHHHHhhhhcCceEEEecccccchhhHHHHHHCCCEEEeCCC----C-------------
Confidence            346899988764222  37888899997  45567788888778898888765554443211    0             


Q ss_pred             CCcccccCCCChhHHHh------hHHHHHHHHHHHHhcCCCCCCCCccccCChhhHHHHHHhcCCcccc----ccccccH
Q psy4626         206 GRLVNLSCSSLPSFVVS------ITACTQALALIELFNAPSGRYKSDVYLLPKKMDEYVASLHLPTFDA----HLTELSD  275 (542)
Q Consensus       206 GrLvnl~~~thp~~vmd------~sfa~q~la~~~L~~~~~~~~~~gv~~lp~~~d~~VA~l~L~~lg~----~i~~lt~  275 (542)
                                ++..+-+      +++..++.......+.+.-.|....  .+.       ++...++|+    .|++-.+
T Consensus       102 ----------~~~~vAE~~~~l~L~~~R~~~~~~~~~~~~~~~w~~~~--~~~-------~l~g~~VgIIG~G~IG~~vA  162 (330)
T PRK12480        102 ----------SPETIAEYSVSIALQLVRRFPDIERRVQAHDFTWQAEI--MSK-------PVKNMTVAIIGTGRIGAATA  162 (330)
T ss_pred             ----------ChHHHHHHHHHHHHHHHHhHHHHHHHHHhCCccccccc--Ccc-------ccCCCEEEEECCCHHHHHHH
Confidence                      0111111      2222222211111222100232210  111       234445555    8888889


Q ss_pred             HHHhhcCCC----CCCCCCCCccccCCeeeeehhhhcccCcEEEEcc----CCCCccCHhHHhcCCCCcEEEccCCCCcc
Q psy4626         276 EQAKYMGLN----KAGPFKPSYYSMDGFSVVKLNEVIRTVDIVVTAT----GNKNVVTREHMDKMKNGCVVCNMGHSNTE  347 (542)
Q Consensus       276 ~~a~~lg~~----e~~p~~a~ea~mdG~~v~~~~~a~~~~d~~~t~t----g~~~vi~~~~~~~mk~gail~n~gh~~~E  347 (542)
                      +.++.+|+.    ...|....+. ..  .+.+++++++.+|+|+++.    .++++|+.+.|+.||+|++++|+||+.+ 
T Consensus       163 ~~L~~~G~~V~~~d~~~~~~~~~-~~--~~~~l~ell~~aDiVil~lP~t~~t~~li~~~~l~~mk~gavlIN~aRG~~-  238 (330)
T PRK12480        163 KIYAGFGATITAYDAYPNKDLDF-LT--YKDSVKEAIKDADIISLHVPANKESYHLFDKAMFDHVKKGAILVNAARGAV-  238 (330)
T ss_pred             HHHHhCCCEEEEEeCChhHhhhh-hh--ccCCHHHHHhcCCEEEEeCCCcHHHHHHHhHHHHhcCCCCcEEEEcCCccc-
Confidence            999999983    2223221111 01  1347899999999999933    3568999999999999999999999975 


Q ss_pred             cccccccC
Q psy4626         348 IDVNSLRT  355 (542)
Q Consensus       348 i~~~~l~~  355 (542)
                      ||-++|.+
T Consensus       239 vd~~aL~~  246 (330)
T PRK12480        239 INTPDLIA  246 (330)
T ss_pred             cCHHHHHH
Confidence            46665654

>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase

Probab=98.16  E-value=9.8e-06  Score=78.75  Aligned_cols=91  Identities=21%  Similarity=0.292  Sum_probs=70.0

Q ss_pred             ccccCcEEEEEcCCh-hHHHHHHHHHhCCCEEEEEeCCchhhhh-hhcCCcee---eC----HHHHhcCCcEEEEcCCCc
Q psy4626          73 VMFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQ-ACMDGFSV---VK----LNEVIRTVDIVVTATGNK  143 (542)
Q Consensus        73 ~~l~GktVvViG~G~-IG~~vA~~l~~~Ga~Viv~d~dp~r~~~-A~~~G~~v---~~----l~e~l~~aDvVi~atG~~  143 (542)
                      ..+.||+|+|+|-+. +|+-+|..|...||+|+++|++...... ........   .+    +.+.+++|||||.+.|.+
T Consensus        58 ~~l~GK~vvVIGrS~iVGkPla~lL~~~~AtVti~~~~~~~~~~~~~~~~hs~t~~~~~~~~l~~~~~~ADIVIsAvG~~  137 (197)
T cd01079          58 NRLYGKTITIINRSEVVGRPLAALLANDGARVYSVDINGIQVFTRGESIRHEKHHVTDEEAMTLDCLSQSDVVITGVPSP  137 (197)
T ss_pred             CCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEEecCcccccccccccccccccccchhhHHHHHhhhCCEEEEccCCC
Confidence            368999999999986 6999999999999999999866543211 00011111   12    567789999999999999


Q ss_pred             cc-CCHHHHhccCCCeEEEeccCC
Q psy4626         144 NV-VTREHMDKMKNGCVVCNMGHS  166 (542)
Q Consensus       144 ~l-I~~e~l~~mk~GailvnvG~g  166 (542)
                      ++ ++.+   .+|+|++++++|..
T Consensus       138 ~~~i~~d---~ik~GavVIDVGi~  158 (197)
T cd01079         138 NYKVPTE---LLKDGAICINFASI  158 (197)
T ss_pred             CCccCHH---HcCCCcEEEEcCCC
Confidence            98 8854   47899999999965

The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional

>PLN02827 Alcohol dehydrogenase-like

Probab=98.14  E-value=5.8e-06  Score=87.94  Aligned_cols=92  Identities=25%  Similarity=0.364  Sum_probs=74.1

Q ss_pred             cccCcEEEEEcCChhHHHHHHHHHhCCC-EEEEEeCCchhhhhhhcCCce-eeCH-------HHHh-----cCCcEEEEc
Q psy4626          74 MFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMDGFS-VVKL-------NEVI-----RTVDIVVTA  139 (542)
Q Consensus        74 ~l~GktVvViG~G~IG~~vA~~l~~~Ga-~Viv~d~dp~r~~~A~~~G~~-v~~l-------~e~l-----~~aDvVi~a  139 (542)
                      ...|++|+|.|.|.+|..+++.++.+|+ .|++++.++.+...+...|++ +++.       .+.+     .+.|+|+++
T Consensus       191 ~~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~lGa~~~i~~~~~~~~~~~~v~~~~~~g~d~vid~  270 (378)
T PLN02827        191 VSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKTFGVTDFINPNDLSEPIQQVIKRMTGGGADYSFEC  270 (378)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCcEEEcccccchHHHHHHHHHhCCCCCEEEEC
Confidence            4579999999999999999999999999 588889888888878778874 3321       1211     268999999


Q ss_pred             CCCcccCCHHHHhccCCC-eEEEeccCC
Q psy4626         140 TGNKNVVTREHMDKMKNG-CVVCNMGHS  166 (542)
Q Consensus       140 tG~~~lI~~e~l~~mk~G-ailvnvG~g  166 (542)
                      +|....+. +.++.+++| +.++.+|..
T Consensus       271 ~G~~~~~~-~~l~~l~~g~G~iv~~G~~  297 (378)
T PLN02827        271 VGDTGIAT-TALQSCSDGWGLTVTLGVP  297 (378)
T ss_pred             CCChHHHH-HHHHhhccCCCEEEEECCc
Confidence            99866664 689999998 999988865

>PRK05225 ketol-acid reductoisomerase; Validated

Probab=98.14  E-value=2.1e-06  Score=92.63  Aligned_cols=90  Identities=24%  Similarity=0.314  Sum_probs=72.1

Q ss_pred             cccCcEEEEEcCChhHHHHHHHHHhCCCEEEE------EeCCchhhhhhhcCCceeeCHHHHhcCCcEEEEcCC--Cccc
Q psy4626          74 MFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYI------TEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATG--NKNV  145 (542)
Q Consensus        74 ~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv------~d~dp~r~~~A~~~G~~v~~l~e~l~~aDvVi~atG--~~~l  145 (542)
                      .+.|++|+|+|||.+|+.-|.-++..|.+|++      +|.++.....|..+|+.+.+++++++.||+|+..+.  ..+.
T Consensus        33 ~LkgKtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~dGF~v~~~~Ea~~~ADvVviLlPDt~q~~  112 (487)
T PRK05225         33 YLKGKKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGFKVGTYEELIPQADLVINLTPDKQHSD  112 (487)
T ss_pred             HhCCCEEEEEccCHHHHHHhCCCccccceeEEeccccccccccchHHHHHhcCCccCCHHHHHHhCCEEEEcCChHHHHH
Confidence            57899999999999999989999999998883      343333334466789999899999999999999643  2445


Q ss_pred             CCHHHHhccCCCeEEEec
Q psy4626         146 VTREHMDKMKNGCVVCNM  163 (542)
Q Consensus       146 I~~e~l~~mk~Gailvnv  163 (542)
                      +..+.+..||+|+.+.-.
T Consensus       113 v~~~i~p~LK~Ga~L~fs  130 (487)
T PRK05225        113 VVRAVQPLMKQGAALGYS  130 (487)
T ss_pred             HHHHHHhhCCCCCEEEec
Confidence            557889999999999763

>KOG0022|consensus

Probab=98.13  E-value=3.6e-06  Score=86.51  Aligned_cols=93  Identities=24%  Similarity=0.283  Sum_probs=77.8

Q ss_pred             ccccCcEEEEEcCChhHHHHHHHHHhCCC-EEEEEeCCchhhhhhhcCCce-eeCHH-------HHh-----cCCcEEEE
Q psy4626          73 VMFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMDGFS-VVKLN-------EVI-----RTVDIVVT  138 (542)
Q Consensus        73 ~~l~GktVvViG~G~IG~~vA~~l~~~Ga-~Viv~d~dp~r~~~A~~~G~~-v~~l~-------e~l-----~~aDvVi~  138 (542)
                      ..-+|++++|+|.|.+|+.+++-+|+.|| +++.+|++|.+...|...|+. .+++.       |.+     .+.|+-++
T Consensus       189 kv~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~fGaTe~iNp~d~~~~i~evi~EmTdgGvDysfE  268 (375)
T KOG0022|consen  189 KVEPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEFGATEFINPKDLKKPIQEVIIEMTDGGVDYSFE  268 (375)
T ss_pred             ccCCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhcCcceecChhhccccHHHHHHHHhcCCceEEEE
Confidence            35689999999999999999999999999 999999999999999999985 45443       333     48999999


Q ss_pred             cCCCcccCCHHHHhccCCC-eEEEeccCC
Q psy4626         139 ATGNKNVVTREHMDKMKNG-CVVCNMGHS  166 (542)
Q Consensus       139 atG~~~lI~~e~l~~mk~G-ailvnvG~g  166 (542)
                      |+|+.+++. ++|...++| +.-+-+|..
T Consensus       269 c~G~~~~m~-~al~s~h~GwG~sv~iGv~  296 (375)
T KOG0022|consen  269 CIGNVSTMR-AALESCHKGWGKSVVIGVA  296 (375)
T ss_pred             ecCCHHHHH-HHHHHhhcCCCeEEEEEec
Confidence            999999885 789988887 665555643

>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.13  E-value=1.2e-05  Score=82.58  Aligned_cols=90  Identities=27%  Similarity=0.451  Sum_probs=73.9

Q ss_pred             HHHHHHHHHhhcCccccCcEEEEEcCCh-hHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCCcEEEE
Q psy4626          60 RESIIDSLKRSTDVMFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVT  138 (542)
Q Consensus        60 ~~s~~~ai~r~~~~~l~GktVvViG~G~-IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~aDvVi~  138 (542)
                      -++++.-+ +..+..+.||+|+|+|-+. +|+.+|..|...|++|++++..             ..++.+.++.||+||.
T Consensus       142 p~av~~lL-~~~~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~atVt~chs~-------------t~~l~~~~~~ADIvI~  207 (284)
T PRK14190        142 PHGILELL-KEYNIDISGKHVVVVGRSNIVGKPVGQLLLNENATVTYCHSK-------------TKNLAELTKQADILIV  207 (284)
T ss_pred             HHHHHHHH-HHcCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEEeCC-------------chhHHHHHHhCCEEEE
Confidence            44555433 3446789999999999975 6999999999999999999731             2356778899999999


Q ss_pred             cCCCcccCCHHHHhccCCCeEEEeccCC
Q psy4626         139 ATGNKNVVTREHMDKMKNGCVVCNMGHS  166 (542)
Q Consensus       139 atG~~~lI~~e~l~~mk~GailvnvG~g  166 (542)
                      ++|.+++++.+.   +|+|++++++|..
T Consensus       208 AvG~p~~i~~~~---ik~gavVIDvGi~  232 (284)
T PRK14190        208 AVGKPKLITADM---VKEGAVVIDVGVN  232 (284)
T ss_pred             ecCCCCcCCHHH---cCCCCEEEEeecc
Confidence            999999998766   5899999999965

>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like

Probab=98.12  E-value=1.2e-05  Score=83.31  Aligned_cols=104  Identities=19%  Similarity=0.272  Sum_probs=80.4

Q ss_pred             HHHHHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCCCE-EEEEeCCchhhhhhhcCCce-eeCH-----H---HHh
Q psy4626          61 ESIIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCV-IYITEIDPICALQACMDGFS-VVKL-----N---EVI  130 (542)
Q Consensus        61 ~s~~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga~-Viv~d~dp~r~~~A~~~G~~-v~~l-----~---e~l  130 (542)
                      ...|+++.+..  ..+|++|+|.|.|.+|..+++.++.+|++ |++++.++.+...+...|+. +++.     +   +..
T Consensus       150 ~ta~~~l~~~~--~~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~  227 (339)
T cd08239         150 GTAYHALRRVG--VSGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKALGADFVINSGQDDVQEIRELT  227 (339)
T ss_pred             HHHHHHHHhcC--CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEcCCcchHHHHHHHh
Confidence            34566665542  35699999999999999999999999998 99999988888777777764 2221     1   122


Q ss_pred             --cCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCCC
Q psy4626         131 --RTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSN  167 (542)
Q Consensus       131 --~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g~  167 (542)
                        .+.|++++++|....+. +.++.+++++.++.+|...
T Consensus       228 ~~~~~d~vid~~g~~~~~~-~~~~~l~~~G~~v~~g~~~  265 (339)
T cd08239         228 SGAGADVAIECSGNTAARR-LALEAVRPWGRLVLVGEGG  265 (339)
T ss_pred             CCCCCCEEEECCCCHHHHH-HHHHHhhcCCEEEEEcCCC
Confidence              26899999999876553 6789999999999988643

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at

>PRK06436 glycerate dehydrogenase; Provisional

Probab=98.11  E-value=1.8e-05  Score=82.30  Aligned_cols=91  Identities=15%  Similarity=0.268  Sum_probs=70.9

Q ss_pred             HhcCCcccc----ccccccHHHHhhcCCC--CCCCCCCCccccCCee--eeehhhhcccCcEEEE----ccCCCCccCHh
Q psy4626         260 SLHLPTFDA----HLTELSDEQAKYMGLN--KAGPFKPSYYSMDGFS--VVKLNEVIRTVDIVVT----ATGNKNVVTRE  327 (542)
Q Consensus       260 ~l~L~~lg~----~i~~lt~~~a~~lg~~--e~~p~~a~ea~mdG~~--v~~~~~a~~~~d~~~t----~tg~~~vi~~~  327 (542)
                      ++..+++|+    .|++-.+++++++|+.  -.||...-    +|..  ..+++|+++++|+|++    +..++++|+.+
T Consensus       119 ~L~gktvgIiG~G~IG~~vA~~l~afG~~V~~~~r~~~~----~~~~~~~~~l~ell~~aDiv~~~lp~t~~T~~li~~~  194 (303)
T PRK06436        119 LLYNKSLGILGYGGIGRRVALLAKAFGMNIYAYTRSYVN----DGISSIYMEPEDIMKKSDFVLISLPLTDETRGMINSK  194 (303)
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcc----cCcccccCCHHHHHhhCCEEEECCCCCchhhcCcCHH
Confidence            466677777    8888889999999994  23443211    2332  3479999999999999    66789999999


Q ss_pred             HHhcCCCCcEEEccCCCCcccccccccC
Q psy4626         328 HMDKMKNGCVVCNMGHSNTEIDVNSLRT  355 (542)
Q Consensus       328 ~~~~mk~gail~n~gh~~~Ei~~~~l~~  355 (542)
                      .|++||+|++++|+|++... |-++|.+
T Consensus       195 ~l~~mk~ga~lIN~sRG~~v-d~~aL~~  221 (303)
T PRK06436        195 MLSLFRKGLAIINVARADVV-DKNDMLN  221 (303)
T ss_pred             HHhcCCCCeEEEECCCcccc-CHHHHHH
Confidence            99999999999999999986 6555543

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=98.11  E-value=1.4e-05  Score=73.32  Aligned_cols=93  Identities=26%  Similarity=0.364  Sum_probs=69.8

Q ss_pred             cccCcEEEEEcCChhHHHHHHHHHhCCC-EEEEEeCCchhhhh-hhcC---CceeeCHH---HHhcCCcEEEEcCCCc-c
Q psy4626          74 MFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQ-ACMD---GFSVVKLN---EVIRTVDIVVTATGNK-N  144 (542)
Q Consensus        74 ~l~GktVvViG~G~IG~~vA~~l~~~Ga-~Viv~d~dp~r~~~-A~~~---G~~v~~l~---e~l~~aDvVi~atG~~-~  144 (542)
                      .+.|++++|+|+|.+|+.++..|...|+ +|+++.+++.|+.. +...   .+...+++   +.+..+|+||.||+.. .
T Consensus         9 ~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~~~~~~~~~~~DivI~aT~~~~~   88 (135)
T PF01488_consen    9 DLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEFGGVNIEAIPLEDLEEALQEADIVINATPSGMP   88 (135)
T ss_dssp             TGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTGCSEEEEEGGGHCHHHHTESEEEE-SSTTST
T ss_pred             CcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCccccceeeHHHHHHHHhhCCeEEEecCCCCc
Confidence            5789999999999999999999999999 59999999887653 2222   23455544   4578999999998654 4


Q ss_pred             cCCHHHHhccCCC-eEEEeccCC
Q psy4626         145 VVTREHMDKMKNG-CVVCNMGHS  166 (542)
Q Consensus       145 lI~~e~l~~mk~G-ailvnvG~g  166 (542)
                      .++.+.+...++. .+++..+..
T Consensus        89 ~i~~~~~~~~~~~~~~v~Dla~P  111 (135)
T PF01488_consen   89 IITEEMLKKASKKLRLVIDLAVP  111 (135)
T ss_dssp             SSTHHHHTTTCHHCSEEEES-SS
T ss_pred             ccCHHHHHHHHhhhhceeccccC
Confidence            6777777766554 488888853

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.11  E-value=2.1e-05  Score=81.36  Aligned_cols=90  Identities=28%  Similarity=0.416  Sum_probs=73.2

Q ss_pred             HHHHHHHHHhhcCccccCcEEEEEcCCh-hHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCCcEEEE
Q psy4626          60 RESIIDSLKRSTDVMFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVT  138 (542)
Q Consensus        60 ~~s~~~ai~r~~~~~l~GktVvViG~G~-IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~aDvVi~  138 (542)
                      -.+++.- .+..+..+.||+|+|+|-+. +|+.++..|...||+|++++..             .-++.+.++.|||||.
T Consensus       142 p~aii~l-L~~~~i~l~Gk~vvVIGrS~iVGkPla~lL~~~~atVtv~hs~-------------T~~l~~~~~~ADIvIs  207 (297)
T PRK14186        142 PAGVMRL-LRSQQIDIAGKKAVVVGRSILVGKPLALMLLAANATVTIAHSR-------------TQDLASITREADILVA  207 (297)
T ss_pred             HHHHHHH-HHHhCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCC-------------CCCHHHHHhhCCEEEE
Confidence            3444443 34456789999999999976 6999999999999999999721             2356778899999999


Q ss_pred             cCCCcccCCHHHHhccCCCeEEEeccCC
Q psy4626         139 ATGNKNVVTREHMDKMKNGCVVCNMGHS  166 (542)
Q Consensus       139 atG~~~lI~~e~l~~mk~GailvnvG~g  166 (542)
                      ++|.+++++.+.   +|+|++++++|..
T Consensus       208 AvGkp~~i~~~~---ik~gavVIDvGin  232 (297)
T PRK14186        208 AAGRPNLIGAEM---VKPGAVVVDVGIH  232 (297)
T ss_pred             ccCCcCccCHHH---cCCCCEEEEeccc
Confidence            999999998644   7899999999965

>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase

Probab=98.11  E-value=1.8e-05  Score=82.92  Aligned_cols=109  Identities=20%  Similarity=0.277  Sum_probs=80.8

Q ss_pred             HHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce-eeCH--------HHHh----
Q psy4626          64 IDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVKL--------NEVI----  130 (542)
Q Consensus        64 ~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~-v~~l--------~e~l----  130 (542)
                      ++++.+.  ....|++|+|.|.|++|..+++.++.+|++|++++.++.+...+...|++ +++.        .+.+    
T Consensus       156 ~~a~~~~--~~~~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~t  233 (349)
T TIGR03201       156 YQAAVQA--GLKKGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEKLEMMKGFGADLTLNPKDKSAREVKKLIKAFA  233 (349)
T ss_pred             HHHHHhc--CCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCCceEecCccccHHHHHHHHHhhc
Confidence            4454442  24579999999999999999999999999999999999888878777864 2221        1111    


Q ss_pred             --cCCc----EEEEcCCCcccCCHHHHhccCCCeEEEeccCCC--cccChHhh
Q psy4626         131 --RTVD----IVVTATGNKNVVTREHMDKMKNGCVVCNMGHSN--TEIDVNSL  175 (542)
Q Consensus       131 --~~aD----vVi~atG~~~lI~~e~l~~mk~GailvnvG~g~--~eid~~aL  175 (542)
                        .+.|    ++++|+|....++ ..++.+++|+.++.+|...  ..++...+
T Consensus       234 ~~~g~d~~~d~v~d~~g~~~~~~-~~~~~l~~~G~iv~~G~~~~~~~~~~~~~  285 (349)
T TIGR03201       234 KARGLRSTGWKIFECSGSKPGQE-SALSLLSHGGTLVVVGYTMAKTEYRLSNL  285 (349)
T ss_pred             ccCCCCCCcCEEEECCCChHHHH-HHHHHHhcCCeEEEECcCCCCcccCHHHH
Confidence              2444    8999999876663 6789999999999999764  23444433

Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.10  E-value=1.5e-05  Score=81.71  Aligned_cols=90  Identities=23%  Similarity=0.377  Sum_probs=73.0

Q ss_pred             HHHHHHHHHhhcCccccCcEEEEEcCC-hhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCCcEEEE
Q psy4626          60 RESIIDSLKRSTDVMFGGKQVVLCGYG-EVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVT  138 (542)
Q Consensus        60 ~~s~~~ai~r~~~~~l~GktVvViG~G-~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~aDvVi~  138 (542)
                      -.+++.- .+..+..+.||+|+|+|-+ -+|+.+|..|...||.|++++..             .-++.+.++.||+||.
T Consensus       141 p~avi~l-L~~~~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~AtVti~hs~-------------T~~l~~~~~~ADIvV~  206 (281)
T PRK14183        141 PLGVMEL-LEEYEIDVKGKDVCVVGASNIVGKPMAALLLNANATVDICHIF-------------TKDLKAHTKKADIVIV  206 (281)
T ss_pred             HHHHHHH-HHHcCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC-------------CcCHHHHHhhCCEEEE
Confidence            3444443 3444678999999999998 68999999999999999999621             1346677899999999


Q ss_pred             cCCCcccCCHHHHhccCCCeEEEeccCC
Q psy4626         139 ATGNKNVVTREHMDKMKNGCVVCNMGHS  166 (542)
Q Consensus       139 atG~~~lI~~e~l~~mk~GailvnvG~g  166 (542)
                      ++|.+++++.+.   +|+|++++++|..
T Consensus       207 AvGkp~~i~~~~---vk~gavvIDvGin  231 (281)
T PRK14183        207 GVGKPNLITEDM---VKEGAIVIDIGIN  231 (281)
T ss_pred             ecCcccccCHHH---cCCCcEEEEeecc
Confidence            999999998654   6899999999954

>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.10  E-value=1.6e-05  Score=81.62  Aligned_cols=91  Identities=25%  Similarity=0.401  Sum_probs=73.8

Q ss_pred             HHHHHHHHHHhhcCccccCcEEEEEcCCh-hHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCCcEEE
Q psy4626          59 CRESIIDSLKRSTDVMFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVV  137 (542)
Q Consensus        59 ~~~s~~~ai~r~~~~~l~GktVvViG~G~-IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~aDvVi  137 (542)
                      |-++++.-+ +..+..+.||+|+|+|-+. +|+.+|..|...|++|++++..             ..++.+.++.|||||
T Consensus       139 Tp~avi~lL-~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVtichs~-------------T~~l~~~~~~ADIvI  204 (282)
T PRK14169        139 TPYGIMALL-DAYDIDVAGKRVVIVGRSNIVGRPLAGLMVNHDATVTIAHSK-------------TRNLKQLTKEADILV  204 (282)
T ss_pred             CHHHHHHHH-HHhCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEECCC-------------CCCHHHHHhhCCEEE
Confidence            345555433 4446789999999999976 6999999999999999999731             235677889999999


Q ss_pred             EcCCCcccCCHHHHhccCCCeEEEeccCC
Q psy4626         138 TATGNKNVVTREHMDKMKNGCVVCNMGHS  166 (542)
Q Consensus       138 ~atG~~~lI~~e~l~~mk~GailvnvG~g  166 (542)
                      .++|.+++++.+   .+|+|++++++|..
T Consensus       205 ~AvG~p~~i~~~---~vk~GavVIDvGin  230 (282)
T PRK14169        205 VAVGVPHFIGAD---AVKPGAVVIDVGIS  230 (282)
T ss_pred             EccCCcCccCHH---HcCCCcEEEEeecc
Confidence            999999999865   47899999999954

>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.10  E-value=1.2e-05  Score=82.43  Aligned_cols=90  Identities=30%  Similarity=0.434  Sum_probs=73.5

Q ss_pred             HHHHHHHHHhhcCccccCcEEEEEcCCh-hHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCCcEEEE
Q psy4626          60 RESIIDSLKRSTDVMFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVT  138 (542)
Q Consensus        60 ~~s~~~ai~r~~~~~l~GktVvViG~G~-IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~aDvVi~  138 (542)
                      -.+++.- .+..+..+.||+|+|+|-+. +|+-++..|...|++|++++..             ..++.+.++.|||||.
T Consensus       141 p~avi~l-L~~~~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVtichs~-------------T~~l~~~~~~ADIvI~  206 (284)
T PRK14170        141 PAGIIEL-IKSTGTQIEGKRAVVIGRSNIVGKPVAQLLLNENATVTIAHSR-------------TKDLPQVAKEADILVV  206 (284)
T ss_pred             HHHHHHH-HHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC-------------CCCHHHHHhhCCEEEE
Confidence            3444443 34456789999999999986 6999999999999999999731             2356788899999999


Q ss_pred             cCCCcccCCHHHHhccCCCeEEEeccCC
Q psy4626         139 ATGNKNVVTREHMDKMKNGCVVCNMGHS  166 (542)
Q Consensus       139 atG~~~lI~~e~l~~mk~GailvnvG~g  166 (542)
                      ++|.+++++.+.   +|+|++++++|..
T Consensus       207 AvG~~~~i~~~~---vk~GavVIDvGin  231 (284)
T PRK14170        207 ATGLAKFVKKDY---IKPGAIVIDVGMD  231 (284)
T ss_pred             ecCCcCccCHHH---cCCCCEEEEccCc
Confidence            999999998654   6899999999965

>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1

Probab=98.09  E-value=6.4e-06  Score=73.53  Aligned_cols=98  Identities=19%  Similarity=0.234  Sum_probs=76.2

Q ss_pred             hhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCcee-eC-----HH----HHh--cCCcEEEEcCCCcccCCHHHHhcc
Q psy4626          87 EVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV-VK-----LN----EVI--RTVDIVVTATGNKNVVTREHMDKM  154 (542)
Q Consensus        87 ~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v-~~-----l~----e~l--~~aDvVi~atG~~~lI~~e~l~~m  154 (542)
                      +||..+++.++.+|++|++++.++.|...+...|+.. .+     +.    +..  .++|+||+|+|+...++ ..++.+
T Consensus         1 ~vG~~a~q~ak~~G~~vi~~~~~~~k~~~~~~~Ga~~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g~~~~~~-~~~~~l   79 (130)
T PF00107_consen    1 GVGLMAIQLAKAMGAKVIATDRSEEKLELAKELGADHVIDYSDDDFVEQIRELTGGRGVDVVIDCVGSGDTLQ-EAIKLL   79 (130)
T ss_dssp             HHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTESEEEETTTSSHHHHHHHHTTTSSEEEEEESSSSHHHHH-HHHHHE
T ss_pred             ChHHHHHHHHHHcCCEEEEEECCHHHHHHHHhhcccccccccccccccccccccccccceEEEEecCcHHHHH-HHHHHh
Confidence            5899999999999999999999999998888888753 22     22    222  36999999999887775 789999


Q ss_pred             CCCeEEEeccCCC---cccChHhhcCCCcceeee
Q psy4626         155 KNGCVVCNMGHSN---TEIDVNSLRTPDLTWEKV  185 (542)
Q Consensus       155 k~GailvnvG~g~---~eid~~aL~~~~l~v~~~  185 (542)
                      ++++.++.+|...   ..++...+..+++++.++
T Consensus        80 ~~~G~~v~vg~~~~~~~~~~~~~~~~~~~~i~g~  113 (130)
T PF00107_consen   80 RPGGRIVVVGVYGGDPISFNLMNLMFKEITIRGS  113 (130)
T ss_dssp             EEEEEEEEESSTSTSEEEEEHHHHHHTTEEEEEE
T ss_pred             ccCCEEEEEEccCCCCCCCCHHHHHhCCcEEEEE
Confidence            9999999999875   344555555555555443

1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....

>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.09  E-value=1.7e-05  Score=81.46  Aligned_cols=91  Identities=22%  Similarity=0.433  Sum_probs=74.0

Q ss_pred             HHHHHHHHHHhhcCccccCcEEEEEcCCh-hHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCCcEEE
Q psy4626          59 CRESIIDSLKRSTDVMFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVV  137 (542)
Q Consensus        59 ~~~s~~~ai~r~~~~~l~GktVvViG~G~-IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~aDvVi  137 (542)
                      |-++++.-+ +..+..+.||+|+|+|-+. +|+.++..|...||.|++++..             +-++.+.++.|||+|
T Consensus       140 Tp~avi~lL-~~y~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVt~chs~-------------T~nl~~~~~~ADIvI  205 (282)
T PRK14166        140 TPLGVMKLL-KAYEIDLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIK-------------TKDLSLYTRQADLII  205 (282)
T ss_pred             CHHHHHHHH-HHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC-------------CCCHHHHHhhCCEEE
Confidence            345555533 3446789999999999976 6999999999999999999731             235777889999999


Q ss_pred             EcCCCcccCCHHHHhccCCCeEEEeccCC
Q psy4626         138 TATGNKNVVTREHMDKMKNGCVVCNMGHS  166 (542)
Q Consensus       138 ~atG~~~lI~~e~l~~mk~GailvnvG~g  166 (542)
                      .++|.+++++.+   .+|+|++++++|..
T Consensus       206 sAvGkp~~i~~~---~vk~GavVIDvGin  231 (282)
T PRK14166        206 VAAGCVNLLRSD---MVKEGVIVVDVGIN  231 (282)
T ss_pred             EcCCCcCccCHH---HcCCCCEEEEeccc
Confidence            999999999865   47899999999953

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=98.09  E-value=3.4e-05  Score=80.41  Aligned_cols=92  Identities=26%  Similarity=0.330  Sum_probs=69.1

Q ss_pred             ccCcEEEEEcCChhHHHHHHHHHhCCC-EEEEEeCCchhhh-hhhcCCceeeCH---HHHhcCCcEEEEcCCCccc--CC
Q psy4626          75 FGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICAL-QACMDGFSVVKL---NEVIRTVDIVVTATGNKNV--VT  147 (542)
Q Consensus        75 l~GktVvViG~G~IG~~vA~~l~~~Ga-~Viv~d~dp~r~~-~A~~~G~~v~~l---~e~l~~aDvVi~atG~~~l--I~  147 (542)
                      +.|++|+|+|+|.+|+.+++.++..|+ +|+++++++.++. .+...|..+.+.   .+.+..+|+||+||+.++.  +-
T Consensus       176 l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVi~at~~~~~~~~~  255 (311)
T cd05213         176 LKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKELGGNAVPLDELLELLNEADVVISATGAPHYAKIV  255 (311)
T ss_pred             ccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcCCeEEeHHHHHHHHhcCCEEEECCCCCchHHHH
Confidence            679999999999999999999998875 8999999988753 455556655543   4567889999999987665  11


Q ss_pred             HHHHhcc-CCCeEEEeccCC
Q psy4626         148 REHMDKM-KNGCVVCNMGHS  166 (542)
Q Consensus       148 ~e~l~~m-k~GailvnvG~g  166 (542)
                      .+.++.. +++.++++.+..
T Consensus       256 ~~~~~~~~~~~~~viDlavP  275 (311)
T cd05213         256 ERAMKKRSGKPRLIVDLAVP  275 (311)
T ss_pred             HHHHhhCCCCCeEEEEeCCC
Confidence            2333333 356788888854

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>TIGR00465 ilvC ketol-acid reductoisomerase

Probab=98.09  E-value=1.4e-05  Score=83.59  Aligned_cols=91  Identities=24%  Similarity=0.367  Sum_probs=67.7

Q ss_pred             ccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCC-chhhhhhhcCCceeeCHHHHhcCCcEEEEcCCCc---ccCCHHH
Q psy4626          75 FGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEID-PICALQACMDGFSVVKLNEVIRTVDIVVTATGNK---NVVTREH  150 (542)
Q Consensus        75 l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~d-p~r~~~A~~~G~~v~~l~e~l~~aDvVi~atG~~---~lI~~e~  150 (542)
                      +.|++|+|||+|.+|..+|+.|+..|.+|++++.. +.+...+...|+.+.+..++++.+|+|+.+....   ..+..+.
T Consensus         1 l~~kkIgiIG~G~mG~AiA~~L~~sG~~Viv~~~~~~~~~~~a~~~Gv~~~s~~ea~~~ADiVvLaVpp~~~~~~v~~ei   80 (314)
T TIGR00465         1 LKGKTVAIIGYGSQGHAQALNLRDSGLNVIVGLRKGGASWKKATEDGFKVGTVEEAIPQADLIMNLLPDEVQHEVYEAEI   80 (314)
T ss_pred             CCcCEEEEEeEcHHHHHHHHHHHHCCCeEEEEECcChhhHHHHHHCCCEECCHHHHHhcCCEEEEeCCcHhHHHHHHHHH
Confidence            46899999999999999999999999998876543 3344445567888778888889999999987533   1222334


Q ss_pred             HhccCCCeEEEeccCC
Q psy4626         151 MDKMKNGCVVCNMGHS  166 (542)
Q Consensus       151 l~~mk~GailvnvG~g  166 (542)
                      ...++++. ++.+++|
T Consensus        81 ~~~l~~g~-iVs~aaG   95 (314)
T TIGR00465        81 QPLLKEGK-TLGFSHG   95 (314)
T ss_pred             HhhCCCCc-EEEEeCC
Confidence            56677776 5666655

This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway

>TIGR01035 hemA glutamyl-tRNA reductase

Probab=98.08  E-value=1.3e-05  Score=86.80  Aligned_cols=92  Identities=27%  Similarity=0.341  Sum_probs=71.1

Q ss_pred             cccCcEEEEEcCChhHHHHHHHHHhCC-CEEEEEeCCchhhh-hhhcCCceeeC---HHHHhcCCcEEEEcCCCc-ccCC
Q psy4626          74 MFGGKQVVLCGYGEVGKGCCQSLKGLG-CVIYITEIDPICAL-QACMDGFSVVK---LNEVIRTVDIVVTATGNK-NVVT  147 (542)
Q Consensus        74 ~l~GktVvViG~G~IG~~vA~~l~~~G-a~Viv~d~dp~r~~-~A~~~G~~v~~---l~e~l~~aDvVi~atG~~-~lI~  147 (542)
                      .+.|++|+|+|+|.+|+.+++.|+..| .+|+++++++.++. .+...|....+   +.+.+.++|+||+|||.+ ++++
T Consensus       177 ~l~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~g~~~i~~~~l~~~l~~aDvVi~aT~s~~~ii~  256 (417)
T TIGR01035       177 SLKGKKALLIGAGEMGELVAKHLLRKGVGKILIANRTYERAEDLAKELGGEAVKFEDLEEYLAEADIVISSTGAPHPIVS  256 (417)
T ss_pred             CccCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCeEeeHHHHHHHHhhCCEEEECCCCCCceEc
Confidence            367899999999999999999999999 59999999988754 34444544443   446678999999999754 5678


Q ss_pred             HHHHhccC----CCeEEEeccC
Q psy4626         148 REHMDKMK----NGCVVCNMGH  165 (542)
Q Consensus       148 ~e~l~~mk----~GailvnvG~  165 (542)
                      ++.+..+.    ...++++.+.
T Consensus       257 ~e~l~~~~~~~~~~~~viDla~  278 (417)
T TIGR01035       257 KEDVERALRERTRPLFIIDIAV  278 (417)
T ss_pred             HHHHHHHHhcCCCCeEEEEeCC
Confidence            77777652    2357888874

This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.

>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.08  E-value=1.4e-05  Score=82.19  Aligned_cols=90  Identities=33%  Similarity=0.448  Sum_probs=73.2

Q ss_pred             HHHHHHHHHhhcCccccCcEEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCCcEEEE
Q psy4626          60 RESIIDSLKRSTDVMFGGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVT  138 (542)
Q Consensus        60 ~~s~~~ai~r~~~~~l~GktVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~aDvVi~  138 (542)
                      -.+++.- .+..+..+.||+++|+|. |.+|+.+|..|...|++|++|+..             ..++.+.++.||+||.
T Consensus       142 p~avi~l-L~~~~i~l~Gk~v~vIG~S~ivG~Pla~lL~~~gatVtv~~s~-------------t~~l~~~~~~ADIVI~  207 (284)
T PRK14179        142 PAGIMEM-FREYNVELEGKHAVVIGRSNIVGKPMAQLLLDKNATVTLTHSR-------------TRNLAEVARKADILVV  207 (284)
T ss_pred             HHHHHHH-HHHhCCCCCCCEEEEECCCCcCcHHHHHHHHHCCCEEEEECCC-------------CCCHHHHHhhCCEEEE
Confidence            3444443 344467899999999999 999999999999999999999411             1257788899999999


Q ss_pred             cCCCcccCCHHHHhccCCCeEEEeccCC
Q psy4626         139 ATGNKNVVTREHMDKMKNGCVVCNMGHS  166 (542)
Q Consensus       139 atG~~~lI~~e~l~~mk~GailvnvG~g  166 (542)
                      +.|.++.++.+   .+|+|++++++|..
T Consensus       208 avg~~~~v~~~---~ik~GavVIDvgin  232 (284)
T PRK14179        208 AIGRGHFVTKE---FVKEGAVVIDVGMN  232 (284)
T ss_pred             ecCccccCCHH---HccCCcEEEEecce
Confidence            99999999854   38999999999954

>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.08  E-value=1.7e-05  Score=81.66  Aligned_cols=91  Identities=24%  Similarity=0.322  Sum_probs=73.6

Q ss_pred             HHHHHHHHHHhhcCccccCcEEEEEcCCh-hHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCCcEEE
Q psy4626          59 CRESIIDSLKRSTDVMFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVV  137 (542)
Q Consensus        59 ~~~s~~~ai~r~~~~~l~GktVvViG~G~-IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~aDvVi  137 (542)
                      |-.+++.- .+..+..+.||+|+|+|-+. +|+.++..|...||+|++++.             ...++.+.++.|||||
T Consensus       142 Tp~av~~l-L~~y~i~l~GK~vvViGrS~iVGkPla~lL~~~~ATVtichs-------------~T~~L~~~~~~ADIvV  207 (288)
T PRK14171        142 TALGCLAV-IKKYEPNLTGKNVVIIGRSNIVGKPLSALLLKENCSVTICHS-------------KTHNLSSITSKADIVV  207 (288)
T ss_pred             CHHHHHHH-HHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCC-------------CCCCHHHHHhhCCEEE
Confidence            34445443 34456789999999999976 699999999999999999973             1235677889999999


Q ss_pred             EcCCCcccCCHHHHhccCCCeEEEeccCC
Q psy4626         138 TATGNKNVVTREHMDKMKNGCVVCNMGHS  166 (542)
Q Consensus       138 ~atG~~~lI~~e~l~~mk~GailvnvG~g  166 (542)
                      .+.|.+++++.+.   +|+|++++++|..
T Consensus       208 ~AvGkp~~i~~~~---vk~GavVIDvGin  233 (288)
T PRK14171        208 AAIGSPLKLTAEY---FNPESIVIDVGIN  233 (288)
T ss_pred             EccCCCCccCHHH---cCCCCEEEEeecc
Confidence            9999999998654   7899999999943

>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase

Probab=98.07  E-value=1.8e-05  Score=83.24  Aligned_cols=92  Identities=22%  Similarity=0.199  Sum_probs=74.8

Q ss_pred             cccCcEEEEEcCChhHHHHHHHHHhCCC-EEEEEeCCchhhhhhhcCCce-eeCH-----HH----Hh--cCCcEEEEcC
Q psy4626          74 MFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMDGFS-VVKL-----NE----VI--RTVDIVVTAT  140 (542)
Q Consensus        74 ~l~GktVvViG~G~IG~~vA~~l~~~Ga-~Viv~d~dp~r~~~A~~~G~~-v~~l-----~e----~l--~~aDvVi~at  140 (542)
                      ..+|++|+|.|.|++|..+++.++.+|+ +|++++.++.+...+...|.+ +++.     .+    ..  .++|++++++
T Consensus       174 ~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~i~~~~~~~g~d~vid~~  253 (358)
T TIGR03451       174 VKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREFGATHTVNSSGTDPVEAIRALTGGFGADVVIDAV  253 (358)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEEcCCCcCHHHHHHHHhCCCCCCEEEECC
Confidence            3579999999999999999999999999 599999999888888777864 3321     11    12  3689999999


Q ss_pred             CCcccCCHHHHhccCCCeEEEeccCC
Q psy4626         141 GNKNVVTREHMDKMKNGCVVCNMGHS  166 (542)
Q Consensus       141 G~~~lI~~e~l~~mk~GailvnvG~g  166 (542)
                      |....++ +.++.++++++++.+|..
T Consensus       254 g~~~~~~-~~~~~~~~~G~iv~~G~~  278 (358)
T TIGR03451       254 GRPETYK-QAFYARDLAGTVVLVGVP  278 (358)
T ss_pred             CCHHHHH-HHHHHhccCCEEEEECCC
Confidence            9766664 688999999999999865

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.

>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.07  E-value=1.9e-05  Score=81.06  Aligned_cols=90  Identities=20%  Similarity=0.374  Sum_probs=73.5

Q ss_pred             HHHHHHHHHhhcCccccCcEEEEEcCCh-hHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCCcEEEE
Q psy4626          60 RESIIDSLKRSTDVMFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVT  138 (542)
Q Consensus        60 ~~s~~~ai~r~~~~~l~GktVvViG~G~-IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~aDvVi~  138 (542)
                      -.+++. +.+..+..+.||+|+|+|-+. +|+.++..|...||.|++++..             .-++.+.++.||+||.
T Consensus       143 p~avi~-ll~~y~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVt~chs~-------------T~~l~~~~~~ADIvIs  208 (284)
T PRK14177        143 PYGMVL-LLKEYGIDVTGKNAVVVGRSPILGKPMAMLLTEMNATVTLCHSK-------------TQNLPSIVRQADIIVG  208 (284)
T ss_pred             HHHHHH-HHHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC-------------CCCHHHHHhhCCEEEE
Confidence            344544 334456789999999999975 7999999999999999999731             2356778899999999


Q ss_pred             cCCCcccCCHHHHhccCCCeEEEeccCC
Q psy4626         139 ATGNKNVVTREHMDKMKNGCVVCNMGHS  166 (542)
Q Consensus       139 atG~~~lI~~e~l~~mk~GailvnvG~g  166 (542)
                      ++|.+++++.+.   +|+|++++++|..
T Consensus       209 AvGk~~~i~~~~---ik~gavVIDvGin  233 (284)
T PRK14177        209 AVGKPEFIKADW---ISEGAVLLDAGYN  233 (284)
T ss_pred             eCCCcCccCHHH---cCCCCEEEEecCc
Confidence            999999998644   7899999999964

>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.07  E-value=2e-05  Score=80.76  Aligned_cols=90  Identities=31%  Similarity=0.479  Sum_probs=73.4

Q ss_pred             HHHHHHHHHhhcCccccCcEEEEEcCCh-hHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCCcEEEE
Q psy4626          60 RESIIDSLKRSTDVMFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVT  138 (542)
Q Consensus        60 ~~s~~~ai~r~~~~~l~GktVvViG~G~-IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~aDvVi~  138 (542)
                      -.+++.-+ +..+..+.||+|+|+|-+. +|+.++..|...||+|++++..             .-++.+.+++||+||.
T Consensus       142 p~av~~lL-~~~~i~l~Gk~vvViGrS~~VGkPla~lL~~~~AtVt~chs~-------------T~~l~~~~~~ADIvIs  207 (278)
T PRK14172        142 PNSVITLI-KSLNIDIEGKEVVVIGRSNIVGKPVAQLLLNENATVTICHSK-------------TKNLKEVCKKADILVV  207 (278)
T ss_pred             HHHHHHHH-HHhCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCC-------------CCCHHHHHhhCCEEEE
Confidence            34444433 3456789999999999975 7999999999999999999731             2356778899999999


Q ss_pred             cCCCcccCCHHHHhccCCCeEEEeccCC
Q psy4626         139 ATGNKNVVTREHMDKMKNGCVVCNMGHS  166 (542)
Q Consensus       139 atG~~~lI~~e~l~~mk~GailvnvG~g  166 (542)
                      +.|.+++++.+.   +|+|++++++|..
T Consensus       208 AvGkp~~i~~~~---ik~gavVIDvGin  232 (278)
T PRK14172        208 AIGRPKFIDEEY---VKEGAIVIDVGTS  232 (278)
T ss_pred             cCCCcCccCHHH---cCCCcEEEEeecc
Confidence            999999998654   7899999999954

>PRK00045 hemA glutamyl-tRNA reductase; Reviewed

Probab=98.07  E-value=1.8e-05  Score=85.83  Aligned_cols=91  Identities=22%  Similarity=0.330  Sum_probs=71.3

Q ss_pred             ccCcEEEEEcCChhHHHHHHHHHhCCC-EEEEEeCCchhhh-hhhcCCceeeCH---HHHhcCCcEEEEcCCCc-ccCCH
Q psy4626          75 FGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICAL-QACMDGFSVVKL---NEVIRTVDIVVTATGNK-NVVTR  148 (542)
Q Consensus        75 l~GktVvViG~G~IG~~vA~~l~~~Ga-~Viv~d~dp~r~~-~A~~~G~~v~~l---~e~l~~aDvVi~atG~~-~lI~~  148 (542)
                      +.|++|+|+|+|.+|+.+++.|+..|+ +|+++++++.++. .+...|..+.+.   .+.+.++|+||+|||.+ .+++.
T Consensus       180 ~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVI~aT~s~~~~i~~  259 (423)
T PRK00045        180 LSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEELAEEFGGEAIPLDELPEALAEADIVISSTGAPHPIIGK  259 (423)
T ss_pred             ccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCCcEeeHHHHHHHhccCCEEEECCCCCCcEEcH
Confidence            689999999999999999999999998 8999999988764 444555444443   45678999999999865 56777


Q ss_pred             HHHhcc-----CCCeEEEeccC
Q psy4626         149 EHMDKM-----KNGCVVCNMGH  165 (542)
Q Consensus       149 e~l~~m-----k~GailvnvG~  165 (542)
                      +.++.+     .++.++++.+.
T Consensus       260 ~~l~~~~~~~~~~~~vviDla~  281 (423)
T PRK00045        260 GMVERALKARRHRPLLLVDLAV  281 (423)
T ss_pred             HHHHHHHhhccCCCeEEEEeCC
Confidence            777654     24578888874

>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.06  E-value=1.4e-05  Score=81.83  Aligned_cols=90  Identities=24%  Similarity=0.422  Sum_probs=74.2

Q ss_pred             HHHHHHHHHhhcCccccCcEEEEEcCC-hhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCCcEEEE
Q psy4626          60 RESIIDSLKRSTDVMFGGKQVVLCGYG-EVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVT  138 (542)
Q Consensus        60 ~~s~~~ai~r~~~~~l~GktVvViG~G-~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~aDvVi~  138 (542)
                      -.+++.-+ +..+..+.|++|+|+|.+ .+|+.+|..+..+|++|++++.+.             -++.+.++.||+||.
T Consensus       136 p~av~~ll-~~~~i~l~Gk~V~ViGrs~~vGrpla~lL~~~~atVtv~hs~t-------------~~L~~~~~~ADIvI~  201 (279)
T PRK14178        136 PNGIMTLL-HEYKISIAGKRAVVVGRSIDVGRPMAALLLNADATVTICHSKT-------------ENLKAELRQADILVS  201 (279)
T ss_pred             HHHHHHHH-HHcCCCCCCCEEEEECCCccccHHHHHHHHhCCCeeEEEecCh-------------hHHHHHHhhCCEEEE
Confidence            34455433 345678999999999999 789999999999999999998432             346778899999999


Q ss_pred             cCCCcccCCHHHHhccCCCeEEEeccCC
Q psy4626         139 ATGNKNVVTREHMDKMKNGCVVCNMGHS  166 (542)
Q Consensus       139 atG~~~lI~~e~l~~mk~GailvnvG~g  166 (542)
                      +.|.+++++++.   +|+|++++++|..
T Consensus       202 Avgk~~lv~~~~---vk~GavVIDVgi~  226 (279)
T PRK14178        202 AAGKAGFITPDM---VKPGATVIDVGIN  226 (279)
T ss_pred             CCCcccccCHHH---cCCCcEEEEeecc
Confidence            999889998766   5999999999954

>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins

Probab=98.06  E-value=3.4e-05  Score=65.09  Aligned_cols=67  Identities=37%  Similarity=0.506  Sum_probs=58.6

Q ss_pred             CccccCcEEEEEcCChhHHHHHHHHHhC-CCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCCcEEEEcCCCcccCCHHH
Q psy4626          72 DVMFGGKQVVLCGYGEVGKGCCQSLKGL-GCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREH  150 (542)
Q Consensus        72 ~~~l~GktVvViG~G~IG~~vA~~l~~~-Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~aDvVi~atG~~~lI~~e~  150 (542)
                      +..+.+++++|+|+|.+|+.++..+... +.+|.++|+                         |++|.|++..+.+..++
T Consensus        18 ~~~~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r-------------------------di~i~~~~~~~~~~~~~   72 (86)
T cd05191          18 NKSLKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR-------------------------DILVTATPAGVPVLEEA   72 (86)
T ss_pred             CCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC-------------------------CEEEEcCCCCCCchHHH
Confidence            4568899999999999999999999998 568999974                         99999999888887667


Q ss_pred             HhccCCCeEEEec
Q psy4626         151 MDKMKNGCVVCNM  163 (542)
Q Consensus       151 l~~mk~Gailvnv  163 (542)
                      ++.++++..+++.
T Consensus        73 ~~~~~~~~~v~~~   85 (86)
T cd05191          73 TAKINEGAVVIDL   85 (86)
T ss_pred             HHhcCCCCEEEec
Confidence            8899999888765

Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al

>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.06  E-value=2e-05  Score=81.36  Aligned_cols=91  Identities=23%  Similarity=0.363  Sum_probs=74.3

Q ss_pred             HHHHHHHHHHhhcCccccCcEEEEEcCCh-hHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCCcEEE
Q psy4626          59 CRESIIDSLKRSTDVMFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVV  137 (542)
Q Consensus        59 ~~~s~~~ai~r~~~~~l~GktVvViG~G~-IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~aDvVi  137 (542)
                      |-.++++-+ +..+..+.||+|+|+|-+. +|+.++..|...||+|++++..             ..++.+.+++|||||
T Consensus       143 Tp~avi~lL-~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVt~chs~-------------T~~l~~~~~~ADIvV  208 (294)
T PRK14187        143 TPKGCLYLI-KTITRNLSGSDAVVIGRSNIVGKPMACLLLGENCTVTTVHSA-------------TRDLADYCSKADILV  208 (294)
T ss_pred             CHHHHHHHH-HHhCCCCCCCEEEEECCCccchHHHHHHHhhCCCEEEEeCCC-------------CCCHHHHHhhCCEEE
Confidence            445555533 3346789999999999986 6999999999999999999731             235677889999999


Q ss_pred             EcCCCcccCCHHHHhccCCCeEEEeccCC
Q psy4626         138 TATGNKNVVTREHMDKMKNGCVVCNMGHS  166 (542)
Q Consensus       138 ~atG~~~lI~~e~l~~mk~GailvnvG~g  166 (542)
                      .++|.+++++.+.   +|+|++++++|..
T Consensus       209 sAvGkp~~i~~~~---ik~gaiVIDVGin  234 (294)
T PRK14187        209 AAVGIPNFVKYSW---IKKGAIVIDVGIN  234 (294)
T ss_pred             EccCCcCccCHHH---cCCCCEEEEeccc
Confidence            9999999998654   6899999999954

>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)

Probab=98.06  E-value=2.1e-05  Score=81.37  Aligned_cols=91  Identities=20%  Similarity=0.365  Sum_probs=74.1

Q ss_pred             HHHHHHHHHHhhcCccccCcEEEEEcCCh-hHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCCcEEE
Q psy4626          59 CRESIIDSLKRSTDVMFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVV  137 (542)
Q Consensus        59 ~~~s~~~ai~r~~~~~l~GktVvViG~G~-IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~aDvVi  137 (542)
                      |-.++++-+ +..+..+.||+|+|+|-+. +|+-++..|...||+|++++..             +-++++.++.|||||
T Consensus       150 Tp~avi~lL-~~~~i~l~Gk~vvVIGRS~iVGkPla~lL~~~~ATVtvchs~-------------T~nl~~~~~~ADIvv  215 (299)
T PLN02516        150 TPKGCLELL-SRSGIPIKGKKAVVVGRSNIVGLPVSLLLLKADATVTVVHSR-------------TPDPESIVREADIVI  215 (299)
T ss_pred             CHHHHHHHH-HHhCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCC-------------CCCHHHHHhhCCEEE
Confidence            345555533 3446789999999999976 6999999999999999999731             235778889999999


Q ss_pred             EcCCCcccCCHHHHhccCCCeEEEeccCC
Q psy4626         138 TATGNKNVVTREHMDKMKNGCVVCNMGHS  166 (542)
Q Consensus       138 ~atG~~~lI~~e~l~~mk~GailvnvG~g  166 (542)
                      .++|.+++++.+.   +|+|++++++|..
T Consensus       216 ~AvGk~~~i~~~~---vk~gavVIDvGin  241 (299)
T PLN02516        216 AAAGQAMMIKGDW---IKPGAAVIDVGTN  241 (299)
T ss_pred             EcCCCcCccCHHH---cCCCCEEEEeecc
Confidence            9999999998644   7899999999954

>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase

Probab=98.05  E-value=1.2e-05  Score=82.58  Aligned_cols=89  Identities=20%  Similarity=0.259  Sum_probs=70.4

Q ss_pred             EEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce-eeCHHHHhcCCcEEEEcCCCcccC-----C-HHHH
Q psy4626          79 QVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVKLNEVIRTVDIVVTATGNKNVV-----T-REHM  151 (542)
Q Consensus        79 tVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~-v~~l~e~l~~aDvVi~atG~~~lI-----~-~e~l  151 (542)
                      +|+|||+|.+|..+|..+...|.+|++||+++.+...+...|.. ..+..++++++|+||.|..+...+     . ...+
T Consensus         1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~v~~~~~~~~   80 (291)
T TIGR01505         1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGPEVADELLAAGAVTAETARQVTEQADVIFTMVPDSPQVEEVAFGENGII   80 (291)
T ss_pred             CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcchHh
Confidence            48999999999999999999999999999999877666666654 446778889999999987543222     1 1235


Q ss_pred             hccCCCeEEEeccCCC
Q psy4626         152 DKMKNGCVVCNMGHSN  167 (542)
Q Consensus       152 ~~mk~GailvnvG~g~  167 (542)
                      ..+++|.+++|++...
T Consensus        81 ~~~~~g~iivd~st~~   96 (291)
T TIGR01505        81 EGAKPGKTLVDMSSIS   96 (291)
T ss_pred             hcCCCCCEEEECCCCC
Confidence            6779999999988764

This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.

>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.04  E-value=2.3e-05  Score=80.43  Aligned_cols=91  Identities=24%  Similarity=0.347  Sum_probs=73.9

Q ss_pred             HHHHHHHHHHhhcCccccCcEEEEEcCCh-hHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCCcEEE
Q psy4626          59 CRESIIDSLKRSTDVMFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVV  137 (542)
Q Consensus        59 ~~~s~~~ai~r~~~~~l~GktVvViG~G~-IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~aDvVi  137 (542)
                      |-.+++.-+ +..+..+.||+|+|+|-+. +|+.++..|...||+|++++..             .-++.+.++.||++|
T Consensus       140 Tp~avi~ll-~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~AtVtichs~-------------T~nl~~~~~~ADIvI  205 (282)
T PRK14182        140 TPAGVMRML-DEARVDPKGKRALVVGRSNIVGKPMAMMLLERHATVTIAHSR-------------TADLAGEVGRADILV  205 (282)
T ss_pred             CHHHHHHHH-HHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC-------------CCCHHHHHhhCCEEE
Confidence            345555533 4446789999999999986 6999999999999999999731             235677889999999


Q ss_pred             EcCCCcccCCHHHHhccCCCeEEEeccCC
Q psy4626         138 TATGNKNVVTREHMDKMKNGCVVCNMGHS  166 (542)
Q Consensus       138 ~atG~~~lI~~e~l~~mk~GailvnvG~g  166 (542)
                      .++|.+++++.+.   +|+|++++++|..
T Consensus       206 ~AvGk~~~i~~~~---ik~gaiVIDvGin  231 (282)
T PRK14182        206 AAIGKAELVKGAW---VKEGAVVIDVGMN  231 (282)
T ss_pred             EecCCcCccCHHH---cCCCCEEEEeece
Confidence            9999999998654   6899999999954

>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase

Probab=98.04  E-value=2.1e-05  Score=83.16  Aligned_cols=102  Identities=24%  Similarity=0.256  Sum_probs=77.6

Q ss_pred             HHHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCCC-EEEEEeCCchhhhhhhcCCce-eeCH-------HHHh---
Q psy4626          63 IIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMDGFS-VVKL-------NEVI---  130 (542)
Q Consensus        63 ~~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga-~Viv~d~dp~r~~~A~~~G~~-v~~l-------~e~l---  130 (542)
                      .|+++.+.. ....|++|+|.|.|+||..+++.++.+|+ +|++++.++.+...+...|++ +++.       .+.+   
T Consensus       173 a~~a~~~~~-~~~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~~Ga~~~i~~~~~~~~~~~~v~~~  251 (368)
T TIGR02818       173 GIGAVLNTA-KVEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKKLGATDCVNPNDYDKPIQEVIVEI  251 (368)
T ss_pred             HHHHHHHhc-CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCCeEEcccccchhHHHHHHHH
Confidence            455543322 24579999999999999999999999999 899999999988888777864 2321       1211   


Q ss_pred             --cCCcEEEEcCCCcccCCHHHHhccCCC-eEEEeccCC
Q psy4626         131 --RTVDIVVTATGNKNVVTREHMDKMKNG-CVVCNMGHS  166 (542)
Q Consensus       131 --~~aDvVi~atG~~~lI~~e~l~~mk~G-ailvnvG~g  166 (542)
                        .++|++++++|....+. +.++.++++ +.++.+|..
T Consensus       252 ~~~g~d~vid~~G~~~~~~-~~~~~~~~~~G~~v~~g~~  289 (368)
T TIGR02818       252 TDGGVDYSFECIGNVNVMR-AALECCHKGWGESIIIGVA  289 (368)
T ss_pred             hCCCCCEEEECCCCHHHHH-HHHHHhhcCCCeEEEEecc
Confidence              26899999999766664 688999876 898888864

The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.

>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.04  E-value=2.4e-05  Score=80.27  Aligned_cols=91  Identities=25%  Similarity=0.355  Sum_probs=73.3

Q ss_pred             HHHHHHHHHHhhcCccccCcEEEEEcCCh-hHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCCcEEE
Q psy4626          59 CRESIIDSLKRSTDVMFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVV  137 (542)
Q Consensus        59 ~~~s~~~ai~r~~~~~l~GktVvViG~G~-IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~aDvVi  137 (542)
                      |-.+++.-+ +..+..+.||+|+|+|-+. +|+.++..|...||+|++++..             .-++.+.++.||+||
T Consensus       141 Tp~aii~lL-~~y~i~l~Gk~vvViGrS~~VGkPla~lL~~~~ATVt~chs~-------------T~dl~~~~k~ADIvI  206 (282)
T PRK14180        141 TPKGIMTML-REYGIKTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRF-------------TTDLKSHTTKADILI  206 (282)
T ss_pred             CHHHHHHHH-HHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEEcCC-------------CCCHHHHhhhcCEEE
Confidence            345555533 3346789999999999975 7999999999999999999731             235667789999999


Q ss_pred             EcCCCcccCCHHHHhccCCCeEEEeccCC
Q psy4626         138 TATGNKNVVTREHMDKMKNGCVVCNMGHS  166 (542)
Q Consensus       138 ~atG~~~lI~~e~l~~mk~GailvnvG~g  166 (542)
                      .++|.+++++.+   .+|+|++++++|..
T Consensus       207 sAvGkp~~i~~~---~vk~gavVIDvGin  232 (282)
T PRK14180        207 VAVGKPNFITAD---MVKEGAVVIDVGIN  232 (282)
T ss_pred             EccCCcCcCCHH---HcCCCcEEEEeccc
Confidence            999999999864   47899999999963

>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent

Probab=98.04  E-value=2e-05  Score=84.57  Aligned_cols=101  Identities=24%  Similarity=0.291  Sum_probs=78.1

Q ss_pred             HHHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCCCE-EEEEeCCchhhhhhhcCCceeeC------HHH----Hh-
Q psy4626          63 IIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCV-IYITEIDPICALQACMDGFSVVK------LNE----VI-  130 (542)
Q Consensus        63 ~~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga~-Viv~d~dp~r~~~A~~~G~~v~~------l~e----~l-  130 (542)
                      .++++.+.  ....|++|+|.|.|+||+.+++.++.+|++ |++.|.++.|...+...|+..+.      ..+    .. 
T Consensus       174 a~~a~~~~--~~~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~~Ga~~v~~~~~~~~~~~v~~~~~  251 (393)
T TIGR02819       174 GYHGAVTA--GVGPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQARSFGCETVDLSKDATLPEQIEQILG  251 (393)
T ss_pred             HHHHHHhc--CCCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHcCCeEEecCCcccHHHHHHHHcC
Confidence            45555543  345799999999999999999999999997 45568888888888888875331      212    12 


Q ss_pred             -cCCcEEEEcCCCc--------------ccCCHHHHhccCCCeEEEeccCC
Q psy4626         131 -RTVDIVVTATGNK--------------NVVTREHMDKMKNGCVVCNMGHS  166 (542)
Q Consensus       131 -~~aDvVi~atG~~--------------~lI~~e~l~~mk~GailvnvG~g  166 (542)
                       .++|++++++|.+              ..+ .+.++.+++|+.++.+|.+
T Consensus       252 ~~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~G~i~~~G~~  301 (393)
T TIGR02819       252 EPEVDCAVDCVGFEARGHGHDGKKEAPATVL-NSLMEVTRVGGAIGIPGLY  301 (393)
T ss_pred             CCCCcEEEECCCCccccccccccccchHHHH-HHHHHHhhCCCEEEEeeec
Confidence             3689999999976              256 4789999999999999986

Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.

>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.04  E-value=2.5e-05  Score=80.41  Aligned_cols=91  Identities=25%  Similarity=0.423  Sum_probs=73.6

Q ss_pred             HHHHHHHHHHhhcCccccCcEEEEEcCCh-hHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCCcEEE
Q psy4626          59 CRESIIDSLKRSTDVMFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVV  137 (542)
Q Consensus        59 ~~~s~~~ai~r~~~~~l~GktVvViG~G~-IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~aDvVi  137 (542)
                      |-++++.-+ +..+..+.||+|+|+|-+. +|+.++..|...|++|++++..             +-++.+.++.|||||
T Consensus       138 Tp~avi~lL-~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVtichs~-------------T~~l~~~~~~ADIvI  203 (287)
T PRK14173        138 TPAGVVRLL-KHYGIPLAGKEVVVVGRSNIVGKPLAALLLREDATVTLAHSK-------------TQDLPAVTRRADVLV  203 (287)
T ss_pred             CHHHHHHHH-HHcCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEeCCC-------------CCCHHHHHhhCCEEE
Confidence            344455433 3456789999999999975 7999999999999999999731             235677889999999


Q ss_pred             EcCCCcccCCHHHHhccCCCeEEEeccCC
Q psy4626         138 TATGNKNVVTREHMDKMKNGCVVCNMGHS  166 (542)
Q Consensus       138 ~atG~~~lI~~e~l~~mk~GailvnvG~g  166 (542)
                      .++|.+++++.+.   +|+|++++++|..
T Consensus       204 sAvGkp~~i~~~~---vk~GavVIDVGin  229 (287)
T PRK14173        204 VAVGRPHLITPEM---VRPGAVVVDVGIN  229 (287)
T ss_pred             EecCCcCccCHHH---cCCCCEEEEccCc
Confidence            9999999998655   6899999999954

>PLN02514 cinnamyl-alcohol dehydrogenase

Probab=98.03  E-value=6.6e-05  Score=79.10  Aligned_cols=118  Identities=14%  Similarity=0.102  Sum_probs=81.6

Q ss_pred             HHHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhh-hcCCce-eeC------HHHHhcCCc
Q psy4626          63 IIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQA-CMDGFS-VVK------LNEVIRTVD  134 (542)
Q Consensus        63 ~~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A-~~~G~~-v~~------l~e~l~~aD  134 (542)
                      .++++.+. +....|++|+|.|.|++|..+++.++.+|++|++++.++.+...+ ...|++ ++.      +.+...+.|
T Consensus       168 a~~al~~~-~~~~~g~~vlV~G~G~vG~~av~~Ak~~G~~vi~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~D  246 (357)
T PLN02514        168 VYSPLSHF-GLKQSGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKKREEALEHLGADDYLVSSDAAEMQEAADSLD  246 (357)
T ss_pred             HHHHHHHc-ccCCCCCeEEEEcccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhcCCcEEecCCChHHHHHhcCCCc
Confidence            35555433 233579999999999999999999999999999988777665444 346664 221      112234689


Q ss_pred             EEEEcCCCcccCCHHHHhccCCCeEEEeccCCC--cccChHhhcCCCcce
Q psy4626         135 IVVTATGNKNVVTREHMDKMKNGCVVCNMGHSN--TEIDVNSLRTPDLTW  182 (542)
Q Consensus       135 vVi~atG~~~lI~~e~l~~mk~GailvnvG~g~--~eid~~aL~~~~l~v  182 (542)
                      ++++++|....+. +.++.+++++.++.+|...  .+++...+..+++++
T Consensus       247 ~vid~~g~~~~~~-~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~i  295 (357)
T PLN02514        247 YIIDTVPVFHPLE-PYLSLLKLDGKLILMGVINTPLQFVTPMLMLGRKVI  295 (357)
T ss_pred             EEEECCCchHHHH-HHHHHhccCCEEEEECCCCCCCcccHHHHhhCCcEE
Confidence            9999998765554 6899999999999998653  244444443333333

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=98.03  E-value=3.2e-05  Score=71.31  Aligned_cols=102  Identities=22%  Similarity=0.243  Sum_probs=72.0

Q ss_pred             HHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCC-CEEEEEeCCchhhhh-hhcCCc-----eeeCHHHHhcCCcEEE
Q psy4626          65 DSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLG-CVIYITEIDPICALQ-ACMDGF-----SVVKLNEVIRTVDIVV  137 (542)
Q Consensus        65 ~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~G-a~Viv~d~dp~r~~~-A~~~G~-----~v~~l~e~l~~aDvVi  137 (542)
                      .++++. +....+++++|+|+|.+|..+++.++..| .+|+++++++.+... +...+.     ...+.++++.++|+||
T Consensus         8 ~a~~~~-~~~~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvi   86 (155)
T cd01065           8 RALEEA-GIELKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELGIAIAYLDLEELLAEADLII   86 (155)
T ss_pred             HHHHhh-CCCCCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcccceeecchhhccccCCEEE
Confidence            344443 34467899999999999999999999986 689999998876543 222232     3445667788999999


Q ss_pred             EcCCCccc-CCHH--HHhccCCCeEEEeccCCC
Q psy4626         138 TATGNKNV-VTRE--HMDKMKNGCVVCNMGHSN  167 (542)
Q Consensus       138 ~atG~~~l-I~~e--~l~~mk~GailvnvG~g~  167 (542)
                      .|++.... +...  ....++++..+++++..+
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~v~D~~~~~  119 (155)
T cd01065          87 NTTPVGMKPGDELPLPPSLLKPGGVVYDVVYNP  119 (155)
T ss_pred             eCcCCCCCCCCCCCCCHHHcCCCCEEEEcCcCC
Confidence            99865332 1111  123468999999988654

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.01  E-value=2.8e-05  Score=79.97  Aligned_cols=91  Identities=23%  Similarity=0.407  Sum_probs=73.4

Q ss_pred             HHHHHHHHHHhhcCccccCcEEEEEcCCh-hHHHHHHHHHhC----CCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCC
Q psy4626          59 CRESIIDSLKRSTDVMFGGKQVVLCGYGE-VGKGCCQSLKGL----GCVIYITEIDPICALQACMDGFSVVKLNEVIRTV  133 (542)
Q Consensus        59 ~~~s~~~ai~r~~~~~l~GktVvViG~G~-IG~~vA~~l~~~----Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~a  133 (542)
                      |-++++.-+ +..+..+.||+|+|+|-+. +|+.++..|...    ++.|++++..             ..++.+.++.|
T Consensus       136 Tp~avi~lL-~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~AtVtvchs~-------------T~~l~~~~~~A  201 (287)
T PRK14181        136 TPAGIIELL-KYYEIPLHGRHVAIVGRSNIVGKPLAALLMQKHPDTNATVTLLHSQ-------------SENLTEILKTA  201 (287)
T ss_pred             CHHHHHHHH-HHhCCCCCCCEEEEECCCccchHHHHHHHHhCcCCCCCEEEEeCCC-------------CCCHHHHHhhC
Confidence            345555533 3456789999999999976 699999999988    8999999731             23577788999


Q ss_pred             cEEEEcCCCcccCCHHHHhccCCCeEEEeccCC
Q psy4626         134 DIVVTATGNKNVVTREHMDKMKNGCVVCNMGHS  166 (542)
Q Consensus       134 DvVi~atG~~~lI~~e~l~~mk~GailvnvG~g  166 (542)
                      ||||.++|.+++++.+.   +|+|++++++|..
T Consensus       202 DIvV~AvG~p~~i~~~~---ik~GavVIDvGin  231 (287)
T PRK14181        202 DIIIAAIGVPLFIKEEM---IAEKAVIVDVGTS  231 (287)
T ss_pred             CEEEEccCCcCccCHHH---cCCCCEEEEeccc
Confidence            99999999999998654   7899999999954

>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative

Probab=98.00  E-value=2.2e-05  Score=82.34  Aligned_cols=90  Identities=24%  Similarity=0.357  Sum_probs=73.1

Q ss_pred             HHHHHHHHHhhcCccccCcEEEEEcCCh-hHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCCcEEEE
Q psy4626          60 RESIIDSLKRSTDVMFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVT  138 (542)
Q Consensus        60 ~~s~~~ai~r~~~~~l~GktVvViG~G~-IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~aDvVi~  138 (542)
                      -.+++.-+ +..+..+.||+|+|+|-+. +|+-+|..|...||+|++++..             .-++.+.++.|||||.
T Consensus       198 p~avi~LL-~~~~i~l~GK~vvVIGRS~iVGkPla~LL~~~~ATVTicHs~-------------T~nl~~~~~~ADIvIs  263 (345)
T PLN02897        198 PKGCVELL-IRSGVEIAGKNAVVIGRSNIVGLPMSLLLQRHDATVSTVHAF-------------TKDPEQITRKADIVIA  263 (345)
T ss_pred             HHHHHHHH-HHhCCCCCCCEEEEECCCccccHHHHHHHHHCCCEEEEEcCC-------------CCCHHHHHhhCCEEEE
Confidence            34455433 3346789999999999976 6999999999999999999731             2356778899999999


Q ss_pred             cCCCcccCCHHHHhccCCCeEEEeccCC
Q psy4626         139 ATGNKNVVTREHMDKMKNGCVVCNMGHS  166 (542)
Q Consensus       139 atG~~~lI~~e~l~~mk~GailvnvG~g  166 (542)
                      ++|.+++++.+.   +|+|+++|++|..
T Consensus       264 AvGkp~~v~~d~---vk~GavVIDVGin  288 (345)
T PLN02897        264 AAGIPNLVRGSW---LKPGAVVIDVGTT  288 (345)
T ss_pred             ccCCcCccCHHH---cCCCCEEEEcccc
Confidence            999999998654   7899999999954

>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative

Probab=98.00  E-value=2.2e-05  Score=82.70  Aligned_cols=91  Identities=26%  Similarity=0.401  Sum_probs=73.9

Q ss_pred             HHHHHHHHHHhhcCccccCcEEEEEcCCh-hHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCCcEEE
Q psy4626          59 CRESIIDSLKRSTDVMFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVV  137 (542)
Q Consensus        59 ~~~s~~~ai~r~~~~~l~GktVvViG~G~-IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~aDvVi  137 (542)
                      |-.++++-+ +..+..+.||+|+|+|-+. +|+-++..|...||.|++++..             .-++.+.+++|||||
T Consensus       214 Tp~avielL-~~y~i~l~GK~vvVIGRS~iVGkPLa~LL~~~~ATVTicHs~-------------T~nl~~~~r~ADIVI  279 (364)
T PLN02616        214 TPKGCIELL-HRYNVEIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR-------------TKNPEEITREADIII  279 (364)
T ss_pred             CHHHHHHHH-HHhCCCCCCCEEEEECCCccccHHHHHHHHHCCCeEEEeCCC-------------CCCHHHHHhhCCEEE
Confidence            345555533 3346789999999999976 6999999999999999999731             235677889999999


Q ss_pred             EcCCCcccCCHHHHhccCCCeEEEeccCC
Q psy4626         138 TATGNKNVVTREHMDKMKNGCVVCNMGHS  166 (542)
Q Consensus       138 ~atG~~~lI~~e~l~~mk~GailvnvG~g  166 (542)
                      .++|.+++++.+.   +|+|+++|++|..
T Consensus       280 sAvGkp~~i~~d~---vK~GAvVIDVGIn  305 (364)
T PLN02616        280 SAVGQPNMVRGSW---IKPGAVVIDVGIN  305 (364)
T ss_pred             EcCCCcCcCCHHH---cCCCCEEEecccc
Confidence            9999999998654   7899999999953

>PLN02740 Alcohol dehydrogenase-like

Probab=98.00  E-value=1.7e-05  Score=84.23  Aligned_cols=93  Identities=23%  Similarity=0.339  Sum_probs=75.3

Q ss_pred             cccCcEEEEEcCChhHHHHHHHHHhCCC-EEEEEeCCchhhhhhhcCCce-eeC-------HHHHh-----cCCcEEEEc
Q psy4626          74 MFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMDGFS-VVK-------LNEVI-----RTVDIVVTA  139 (542)
Q Consensus        74 ~l~GktVvViG~G~IG~~vA~~l~~~Ga-~Viv~d~dp~r~~~A~~~G~~-v~~-------l~e~l-----~~aDvVi~a  139 (542)
                      ...|++|+|+|.|+||..+++.++.+|+ +|++++.++.|...+...|++ +++       ..+.+     .++|+++++
T Consensus       196 ~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~v~~~~~~g~dvvid~  275 (381)
T PLN02740        196 VQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKEMGITDFINPKDSDKPVHERIREMTGGGVDYSFEC  275 (381)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHcCCcEEEecccccchHHHHHHHHhCCCCCEEEEC
Confidence            4579999999999999999999999999 699999999998888888875 332       21222     259999999


Q ss_pred             CCCcccCCHHHHhccCCC-eEEEeccCCC
Q psy4626         140 TGNKNVVTREHMDKMKNG-CVVCNMGHSN  167 (542)
Q Consensus       140 tG~~~lI~~e~l~~mk~G-ailvnvG~g~  167 (542)
                      +|....+. +.+..+++| +.++.+|...
T Consensus       276 ~G~~~~~~-~a~~~~~~g~G~~v~~G~~~  303 (381)
T PLN02740        276 AGNVEVLR-EAFLSTHDGWGLTVLLGIHP  303 (381)
T ss_pred             CCChHHHH-HHHHhhhcCCCEEEEEccCC
Confidence            99876774 788889886 8888888653

>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]

Probab=97.98  E-value=1.8e-05  Score=81.42  Aligned_cols=90  Identities=19%  Similarity=0.276  Sum_probs=72.7

Q ss_pred             cEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchh-hhhhhcCCce-eeCHHHHhcCCcEEEEcCCCcccCC------HH
Q psy4626          78 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPIC-ALQACMDGFS-VVKLNEVIRTVDIVVTATGNKNVVT------RE  149 (542)
Q Consensus        78 ktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r-~~~A~~~G~~-v~~l~e~l~~aDvVi~atG~~~lI~------~e  149 (542)
                      .+|++||.|.+|..+|+.|...|..|.+||++|.+ ...+...|.. ..++.++...+|+||++..+...+.      ..
T Consensus         1 ~kIafIGLG~MG~pmA~~L~~aG~~v~v~~r~~~ka~~~~~~~Ga~~a~s~~eaa~~aDvVitmv~~~~~V~~V~~g~~g   80 (286)
T COG2084           1 MKIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPEKAAELLAAAGATVAASPAEAAAEADVVITMLPDDAAVRAVLFGENG   80 (286)
T ss_pred             CeEEEEcCchhhHHHHHHHHHCCCEEEEEeCChhhhhHHHHHcCCcccCCHHHHHHhCCEEEEecCCHHHHHHHHhCccc
Confidence            37999999999999999999999999999999998 4445565776 4567788999999999876443332      23


Q ss_pred             HHhccCCCeEEEeccCCC
Q psy4626         150 HMDKMKNGCVVCNMGHSN  167 (542)
Q Consensus       150 ~l~~mk~GailvnvG~g~  167 (542)
                      .++.+|+|+++|+.+.-+
T Consensus        81 ~~~~~~~G~i~IDmSTis   98 (286)
T COG2084          81 LLEGLKPGAIVIDMSTIS   98 (286)
T ss_pred             hhhcCCCCCEEEECCCCC
Confidence            567789999999998764

>KOG0069|consensus

Probab=97.98  E-value=1.1e-05  Score=84.44  Aligned_cols=178  Identities=15%  Similarity=0.219  Sum_probs=108.5

Q ss_pred             CcEEEEcCCCcccCCHHHHhcc-CCCeEEEeccCCCcccChHhhcCCCcceeeeccceeeEecCCCCEEEEecCCCcccc
Q psy4626         133 VDIVVTATGNKNVVTREHMDKM-KNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIVLLAEGRLVNL  211 (542)
Q Consensus       133 aDvVi~atG~~~lI~~e~l~~m-k~GailvnvG~g~~eid~~aL~~~~l~v~~~~~~v~~y~~~dg~~I~LLa~GrLvnl  211 (542)
                      +-+++.+....... .+.+..+ ++...++++|.|-+.+|+++++.+++++.++......                    
T Consensus        61 ~~~~~~~~~~~~~~-~~~~~a~~p~lK~i~t~~vG~D~vDl~a~~krgI~V~nvp~~~~~--------------------  119 (336)
T KOG0069|consen   61 SRIAISVPFTGAFT-KELISALSPNLKLIVTMSVGYDHVDLEAARKRGIRVANVPDVLTD--------------------  119 (336)
T ss_pred             eeeeeecccchHHh-HhhhhhcCCCeeEEEEeecccchhhHHHHHhcCceEeccCCcchH--------------------
Confidence            33444444444443 4566666 6667788999999999999999888877655321100                    


Q ss_pred             cCCCChhHHHhhHHHHHHHHHHHHhcCC-----CCCCCCccccCChhhHHHHH-HhcCCcccc----ccccccHHHHhhc
Q psy4626         212 SCSSLPSFVVSITACTQALALIELFNAP-----SGRYKSDVYLLPKKMDEYVA-SLHLPTFDA----HLTELSDEQAKYM  281 (542)
Q Consensus       212 ~~~thp~~vmd~sfa~q~la~~~L~~~~-----~~~~~~gv~~lp~~~d~~VA-~l~L~~lg~----~i~~lt~~~a~~l  281 (542)
                      ..       -|...+. .|+....+.++     +++|...+.       .... .+..++.|+    +|++..++|.+++
T Consensus       120 ~v-------Ad~~~~l-il~~~R~~~~g~~~~~~g~w~~~~~-------~~~g~~~~gK~vgilG~G~IG~~ia~rL~~F  184 (336)
T KOG0069|consen  120 DV-------ADLAVSL-LLALLRRFSEGNEMVRNGGWGWAGG-------WPLGYDLEGKTVGILGLGRIGKAIAKRLKPF  184 (336)
T ss_pred             HH-------HHHHHHH-HHHHHhhhhhhhhhhhcCCccccCC-------ccccccccCCEEEEecCcHHHHHHHHhhhhc
Confidence            00       0111111 11112211111     034411111       1111 345567777    9999999999999


Q ss_pred             CCCCCC----CCCCCccccCCeeeeehhhhcccCcEEEE----ccCCCCccCHhHHhcCCCCcEEEccCCCCc
Q psy4626         282 GLNKAG----PFKPSYYSMDGFSVVKLNEVIRTVDIVVT----ATGNKNVVTREHMDKMKNGCVVCNMGHSNT  346 (542)
Q Consensus       282 g~~e~~----p~~a~ea~mdG~~v~~~~~a~~~~d~~~t----~tg~~~vi~~~~~~~mk~gail~n~gh~~~  346 (542)
                      |..-..    +.+.-++.--+-+..++++.++++|++|.    +.-+.++|+++-|++||+|++|+|+|++.+
T Consensus       185 g~~i~y~~r~~~~~~~~~~~~~~~~d~~~~~~~sD~ivv~~pLt~~T~~liNk~~~~~mk~g~vlVN~aRG~i  257 (336)
T KOG0069|consen  185 GCVILYHSRTQLPPEEAYEYYAEFVDIEELLANSDVIVVNCPLTKETRHLINKKFIEKMKDGAVLVNTARGAI  257 (336)
T ss_pred             cceeeeecccCCchhhHHHhcccccCHHHHHhhCCEEEEecCCCHHHHHHhhHHHHHhcCCCeEEEecccccc
Confidence            952111    22222221122225689999999999998    778899999999999999999999999976

>PRK11559 garR tartronate semialdehyde reductase; Provisional

Probab=97.98  E-value=2.7e-05  Score=80.03  Aligned_cols=90  Identities=21%  Similarity=0.301  Sum_probs=71.1

Q ss_pred             cEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCcee-eCHHHHhcCCcEEEEcCCCcc----cCC--HHH
Q psy4626          78 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV-VKLNEVIRTVDIVVTATGNKN----VVT--REH  150 (542)
Q Consensus        78 ktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v-~~l~e~l~~aDvVi~atG~~~----lI~--~e~  150 (542)
                      .+|+|+|+|.+|..+|..+...|.+|++||+++.+.......|... .+.+++++++|+||.|.....    ++.  ...
T Consensus         3 ~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~g~~~~~~~~e~~~~~d~vi~~vp~~~~~~~v~~~~~~~   82 (296)
T PRK11559          3 MKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPEAVAEVIAAGAETASTAKAVAEQCDVIITMLPNSPHVKEVALGENGI   82 (296)
T ss_pred             ceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEeCCCHHHHHHHHcCcchH
Confidence            4799999999999999999999999999999998766555666654 467788899999999875322    221  123


Q ss_pred             HhccCCCeEEEeccCCC
Q psy4626         151 MDKMKNGCVVCNMGHSN  167 (542)
Q Consensus       151 l~~mk~GailvnvG~g~  167 (542)
                      +..+++|.++++++...
T Consensus        83 ~~~~~~g~iiid~st~~   99 (296)
T PRK11559         83 IEGAKPGTVVIDMSSIA   99 (296)
T ss_pred             hhcCCCCcEEEECCCCC
Confidence            56789999999998875

>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.96  E-value=3.9e-05  Score=78.85  Aligned_cols=91  Identities=30%  Similarity=0.417  Sum_probs=73.6

Q ss_pred             HHHHHHHHHHhhcCccccCcEEEEEcCCh-hHHHHHHHHHh--CCCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCCcE
Q psy4626          59 CRESIIDSLKRSTDVMFGGKQVVLCGYGE-VGKGCCQSLKG--LGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDI  135 (542)
Q Consensus        59 ~~~s~~~ai~r~~~~~l~GktVvViG~G~-IG~~vA~~l~~--~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~aDv  135 (542)
                      |-++++.-+ +..+..+.||+++|+|-+. +|+.++..|..  .|++|++++..             ..++.+.++.||+
T Consensus       141 Tp~av~~ll-~~~~i~l~Gk~vvViGrS~~VGkPla~lL~~~~~~atVtvchs~-------------T~~l~~~~k~ADI  206 (284)
T PRK14193        141 TPRGIVHLL-RRYDVELAGAHVVVIGRGVTVGRPIGLLLTRRSENATVTLCHTG-------------TRDLAAHTRRADI  206 (284)
T ss_pred             CHHHHHHHH-HHhCCCCCCCEEEEECCCCcchHHHHHHHhhccCCCEEEEeCCC-------------CCCHHHHHHhCCE
Confidence            345555533 3446789999999999975 79999999987  79999999732             2357788899999


Q ss_pred             EEEcCCCcccCCHHHHhccCCCeEEEeccCC
Q psy4626         136 VVTATGNKNVVTREHMDKMKNGCVVCNMGHS  166 (542)
Q Consensus       136 Vi~atG~~~lI~~e~l~~mk~GailvnvG~g  166 (542)
                      ||.++|.+++++.+.   +|+|++++++|..
T Consensus       207 vV~AvGkp~~i~~~~---ik~GavVIDvGin  234 (284)
T PRK14193        207 IVAAAGVAHLVTADM---VKPGAAVLDVGVS  234 (284)
T ss_pred             EEEecCCcCccCHHH---cCCCCEEEEcccc
Confidence            999999999998654   7899999999954

>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.95  E-value=4.1e-05  Score=78.96  Aligned_cols=91  Identities=24%  Similarity=0.419  Sum_probs=72.9

Q ss_pred             HHHHHHHHHHhhcCccccCcEEEEEcCCh-hHHHHHHHHHhC----CCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCC
Q psy4626          59 CRESIIDSLKRSTDVMFGGKQVVLCGYGE-VGKGCCQSLKGL----GCVIYITEIDPICALQACMDGFSVVKLNEVIRTV  133 (542)
Q Consensus        59 ~~~s~~~ai~r~~~~~l~GktVvViG~G~-IG~~vA~~l~~~----Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~a  133 (542)
                      |-.+++.-+ +..+..+.||+|+|+|-+. +|+.++..|...    +|.|++++..             .-++.+.+++|
T Consensus       140 Tp~av~~lL-~~~~i~l~GK~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~-------------T~nl~~~~~~A  205 (293)
T PRK14185        140 TPNGILELL-KRYHIETSGKKCVVLGRSNIVGKPMAQLMMQKAYPGDCTVTVCHSR-------------SKNLKKECLEA  205 (293)
T ss_pred             CHHHHHHHH-HHhCCCCCCCEEEEECCCccchHHHHHHHHcCCCCCCCEEEEecCC-------------CCCHHHHHhhC
Confidence            345555533 3446789999999999976 699999999877    7999999732             23567788999


Q ss_pred             cEEEEcCCCcccCCHHHHhccCCCeEEEeccCC
Q psy4626         134 DIVVTATGNKNVVTREHMDKMKNGCVVCNMGHS  166 (542)
Q Consensus       134 DvVi~atG~~~lI~~e~l~~mk~GailvnvG~g  166 (542)
                      ||||.++|.+++++.+   .+|+|++++++|..
T Consensus       206 DIvIsAvGkp~~i~~~---~vk~gavVIDvGin  235 (293)
T PRK14185        206 DIIIAALGQPEFVKAD---MVKEGAVVIDVGTT  235 (293)
T ss_pred             CEEEEccCCcCccCHH---HcCCCCEEEEecCc
Confidence            9999999999999854   47999999999953

>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]

Probab=97.94  E-value=2.6e-05  Score=79.58  Aligned_cols=89  Identities=27%  Similarity=0.417  Sum_probs=72.8

Q ss_pred             HHHHHHHHhhcCccccCcEEEEEcCCh-hHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCCcEEEEc
Q psy4626          61 ESIIDSLKRSTDVMFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTA  139 (542)
Q Consensus        61 ~s~~~ai~r~~~~~l~GktVvViG~G~-IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~aDvVi~a  139 (542)
                      .+++.-+ +..+..+.|++++|+|-++ +|+.+++.|...++.|++++..             .-++.+.++.||++|.+
T Consensus       141 ~gi~~ll-~~~~i~l~Gk~~vVVGrS~iVGkPla~lL~~~naTVtvcHs~-------------T~~l~~~~k~ADIvv~A  206 (283)
T COG0190         141 AGIMTLL-EEYGIDLRGKNVVVVGRSNIVGKPLALLLLNANATVTVCHSR-------------TKDLASITKNADIVVVA  206 (283)
T ss_pred             HHHHHHH-HHhCCCCCCCEEEEECCCCcCcHHHHHHHHhCCCEEEEEcCC-------------CCCHHHHhhhCCEEEEe
Confidence            4444433 4446789999999999987 5899999999999999999832             23566778999999999


Q ss_pred             CCCcccCCHHHHhccCCCeEEEeccCC
Q psy4626         140 TGNKNVVTREHMDKMKNGCVVCNMGHS  166 (542)
Q Consensus       140 tG~~~lI~~e~l~~mk~GailvnvG~g  166 (542)
                      .|.++++++   +++|+|++++.+|..
T Consensus       207 vG~p~~i~~---d~vk~gavVIDVGin  230 (283)
T COG0190         207 VGKPHFIKA---DMVKPGAVVIDVGIN  230 (283)
T ss_pred             cCCcccccc---ccccCCCEEEecCCc
Confidence            999999984   457999999999954

>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional

Probab=97.94  E-value=3.4e-05  Score=80.43  Aligned_cols=92  Identities=18%  Similarity=0.213  Sum_probs=73.1

Q ss_pred             cccCcEEEEEcCChhHHHHHHHHHhCCCE-EEEEeCCchhhhhhhcCCce-eeCH-----HH---Hh--cCCc-EEEEcC
Q psy4626          74 MFGGKQVVLCGYGEVGKGCCQSLKGLGCV-IYITEIDPICALQACMDGFS-VVKL-----NE---VI--RTVD-IVVTAT  140 (542)
Q Consensus        74 ~l~GktVvViG~G~IG~~vA~~l~~~Ga~-Viv~d~dp~r~~~A~~~G~~-v~~l-----~e---~l--~~aD-vVi~at  140 (542)
                      ...|++|+|.|.|.+|..+++.++.+|++ |++++.++.+...+...|.. +++.     ++   ..  .+.| ++++|+
T Consensus       158 ~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~d~~v~d~~  237 (347)
T PRK10309        158 GCEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKSLGAMQTFNSREMSAPQIQSVLRELRFDQLILETA  237 (347)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCceEecCcccCHHHHHHHhcCCCCCeEEEECC
Confidence            35799999999999999999999999996 78888888887777667764 2221     11   12  2467 999999


Q ss_pred             CCcccCCHHHHhccCCCeEEEeccCC
Q psy4626         141 GNKNVVTREHMDKMKNGCVVCNMGHS  166 (542)
Q Consensus       141 G~~~lI~~e~l~~mk~GailvnvG~g  166 (542)
                      |....+. +.++.+++|+.++.+|..
T Consensus       238 G~~~~~~-~~~~~l~~~G~iv~~G~~  262 (347)
T PRK10309        238 GVPQTVE-LAIEIAGPRAQLALVGTL  262 (347)
T ss_pred             CCHHHHH-HHHHHhhcCCEEEEEccC
Confidence            9876774 789999999999999864

>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional

Probab=97.92  E-value=3.5e-05  Score=79.58  Aligned_cols=89  Identities=15%  Similarity=0.270  Sum_probs=71.2

Q ss_pred             EEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce-eeCHHHHhcCCcEEEEcCCCcccCC------HHHH
Q psy4626          79 QVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVKLNEVIRTVDIVVTATGNKNVVT------REHM  151 (542)
Q Consensus        79 tVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~-v~~l~e~l~~aDvVi~atG~~~lI~------~e~l  151 (542)
                      +|+|+|.|.+|..+|..+...|.+|++||+++.+.......|.. ..+..++++.+|+||.|..+...+.      ...+
T Consensus         3 ~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~~~~~~~~~~g~~~~~s~~~~~~~aDvVi~~vp~~~~~~~vl~~~~~i~   82 (296)
T PRK15461          3 AIAFIGLGQMGSPMASNLLKQGHQLQVFDVNPQAVDALVDKGATPAASPAQAAAGAEFVITMLPNGDLVRSVLFGENGVC   82 (296)
T ss_pred             eEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcccHh
Confidence            79999999999999999999999999999999887666566654 4467788899999999876543221      1234


Q ss_pred             hccCCCeEEEeccCCC
Q psy4626         152 DKMKNGCVVCNMGHSN  167 (542)
Q Consensus       152 ~~mk~GailvnvG~g~  167 (542)
                      ..+++|.++++++...
T Consensus        83 ~~l~~g~lvid~sT~~   98 (296)
T PRK15461         83 EGLSRDALVIDMSTIH   98 (296)
T ss_pred             hcCCCCCEEEECCCCC
Confidence            5678999999999885

>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.92  E-value=5e-05  Score=78.56  Aligned_cols=90  Identities=23%  Similarity=0.314  Sum_probs=71.9

Q ss_pred             HHHHHHHHHhhcCccccCcEEEEEcCCh-hHHHHHHHHHhC----CCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCCc
Q psy4626          60 RESIIDSLKRSTDVMFGGKQVVLCGYGE-VGKGCCQSLKGL----GCVIYITEIDPICALQACMDGFSVVKLNEVIRTVD  134 (542)
Q Consensus        60 ~~s~~~ai~r~~~~~l~GktVvViG~G~-IG~~vA~~l~~~----Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~aD  134 (542)
                      -.+++.- .+..+..+.||+|+|+|-+. +|+.+|..|...    ++.|++++..             .-++.+.++.||
T Consensus       141 p~avi~l-L~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~-------------T~~l~~~~~~AD  206 (297)
T PRK14167        141 PHGIQKL-LAAAGVDTEGADVVVVGRSDIVGKPMANLLIQKADGGNATVTVCHSR-------------TDDLAAKTRRAD  206 (297)
T ss_pred             HHHHHHH-HHHhCCCCCCCEEEEECCCcccHHHHHHHHhcCccCCCCEEEEeCCC-------------CCCHHHHHhhCC
Confidence            4445543 33446789999999999976 699999999876    8999999731             235677889999


Q ss_pred             EEEEcCCCcccCCHHHHhccCCCeEEEeccCC
Q psy4626         135 IVVTATGNKNVVTREHMDKMKNGCVVCNMGHS  166 (542)
Q Consensus       135 vVi~atG~~~lI~~e~l~~mk~GailvnvG~g  166 (542)
                      |||.+.|.+++++.+   .+|+|++++++|..
T Consensus       207 IvIsAvGkp~~i~~~---~ik~gaiVIDvGin  235 (297)
T PRK14167        207 IVVAAAGVPELIDGS---MLSEGATVIDVGIN  235 (297)
T ss_pred             EEEEccCCcCccCHH---HcCCCCEEEEcccc
Confidence            999999999999864   47999999999953

>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.92  E-value=3.7e-05  Score=79.10  Aligned_cols=90  Identities=24%  Similarity=0.355  Sum_probs=73.1

Q ss_pred             HHHHHHHHHhhcCccccCcEEEEEcCCh-hHHHHHHHHHh----CCCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCCc
Q psy4626          60 RESIIDSLKRSTDVMFGGKQVVLCGYGE-VGKGCCQSLKG----LGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVD  134 (542)
Q Consensus        60 ~~s~~~ai~r~~~~~l~GktVvViG~G~-IG~~vA~~l~~----~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~aD  134 (542)
                      -.+++.-+ +..+..+.||+|+|+|-+. +|+.++..|..    .||+|++++...             .++.+.++.||
T Consensus       141 p~av~~lL-~~~~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~AtVt~~hs~t-------------~~l~~~~~~AD  206 (286)
T PRK14184        141 PAGVMTLL-ERYGLSPAGKKAVVVGRSNIVGKPLALMLGAPGKFANATVTVCHSRT-------------PDLAEECREAD  206 (286)
T ss_pred             HHHHHHHH-HHhCCCCCCCEEEEECCCccchHHHHHHHhCCcccCCCEEEEEeCCc-------------hhHHHHHHhCC
Confidence            34455433 3446789999999999986 69999999988    899999997322             35677889999


Q ss_pred             EEEEcCCCcccCCHHHHhccCCCeEEEeccCC
Q psy4626         135 IVVTATGNKNVVTREHMDKMKNGCVVCNMGHS  166 (542)
Q Consensus       135 vVi~atG~~~lI~~e~l~~mk~GailvnvG~g  166 (542)
                      +||.++|.+++++.+.+   |+|++++++|..
T Consensus       207 IVI~AvG~p~li~~~~v---k~GavVIDVGi~  235 (286)
T PRK14184        207 FLFVAIGRPRFVTADMV---KPGAVVVDVGIN  235 (286)
T ss_pred             EEEEecCCCCcCCHHHc---CCCCEEEEeeee
Confidence            99999999999987654   999999999954

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=97.88  E-value=0.00013  Score=72.78  Aligned_cols=105  Identities=18%  Similarity=0.211  Sum_probs=77.5

Q ss_pred             cCccccCcEEEEEcCChhHHHHHHHHHhCCC---EEEEEeCC----chhh--------hhhhcCCc-ee-eCHHHHhcCC
Q psy4626          71 TDVMFGGKQVVLCGYGEVGKGCCQSLKGLGC---VIYITEID----PICA--------LQACMDGF-SV-VKLNEVIRTV  133 (542)
Q Consensus        71 ~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga---~Viv~d~d----p~r~--------~~A~~~G~-~v-~~l~e~l~~a  133 (542)
                      .+..+.+++++|+|+|..|+++|..|...|+   +|+++|++    +.|.        ..+...+. .. .++.+.++++
T Consensus        19 ~g~~l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~~~~~~~l~~~l~~~   98 (226)
T cd05311          19 VGKKIEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPEKTGGTLKEALKGA   98 (226)
T ss_pred             hCCCccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCCccccccchhhhHHHHHHHHHhccCcccCCHHHHHhcC
Confidence            3456889999999999999999999999998   59999998    3332        11222211 11 3566778889


Q ss_pred             cEEEEcCCCcccCCHHHHhccCCCeEEEeccCCCcccChHhhc
Q psy4626         134 DIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLR  176 (542)
Q Consensus       134 DvVi~atG~~~lI~~e~l~~mk~GailvnvG~g~~eid~~aL~  176 (542)
                      |++|.+|+ .++++.+.++.|.++.++........|...+...
T Consensus        99 dvlIgaT~-~G~~~~~~l~~m~~~~ivf~lsnP~~e~~~~~A~  140 (226)
T cd05311          99 DVFIGVSR-PGVVKKEMIKKMAKDPIVFALANPVPEIWPEEAK  140 (226)
T ss_pred             CEEEeCCC-CCCCCHHHHHhhCCCCEEEEeCCCCCcCCHHHHH
Confidence            99999997 7889888999998888877766443454444444

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.86  E-value=5.7e-05  Score=78.13  Aligned_cols=91  Identities=24%  Similarity=0.342  Sum_probs=72.8

Q ss_pred             HHHHHHHHHHhhcCccccCcEEEEEcCCh-hHHHHHHHHHhC----CCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCC
Q psy4626          59 CRESIIDSLKRSTDVMFGGKQVVLCGYGE-VGKGCCQSLKGL----GCVIYITEIDPICALQACMDGFSVVKLNEVIRTV  133 (542)
Q Consensus        59 ~~~s~~~ai~r~~~~~l~GktVvViG~G~-IG~~vA~~l~~~----Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~a  133 (542)
                      |-.+++.- .+..+..+.|++|+|+|-+. +|+.+|..|...    +++|++++..             .-++.+.++.|
T Consensus       144 Tp~avi~l-L~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~atVtv~hs~-------------T~~l~~~~~~A  209 (297)
T PRK14168        144 TPAGIQEM-LVRSGVETSGAEVVVVGRSNIVGKPIANMMTQKGPGANATVTIVHTR-------------SKNLARHCQRA  209 (297)
T ss_pred             CHHHHHHH-HHHhCCCCCCCEEEEECCCCcccHHHHHHHHhcccCCCCEEEEecCC-------------CcCHHHHHhhC
Confidence            34445543 33446789999999999975 699999999887    7999999732             23567788999


Q ss_pred             cEEEEcCCCcccCCHHHHhccCCCeEEEeccCC
Q psy4626         134 DIVVTATGNKNVVTREHMDKMKNGCVVCNMGHS  166 (542)
Q Consensus       134 DvVi~atG~~~lI~~e~l~~mk~GailvnvG~g  166 (542)
                      ||||.++|.+++++.+.   +|+|++++++|..
T Consensus       210 DIvVsAvGkp~~i~~~~---ik~gavVIDvGin  239 (297)
T PRK14168        210 DILIVAAGVPNLVKPEW---IKPGATVIDVGVN  239 (297)
T ss_pred             CEEEEecCCcCccCHHH---cCCCCEEEecCCC
Confidence            99999999999998654   7899999999953

>PRK08605 D-lactate dehydrogenase; Validated

Probab=97.86  E-value=5.6e-05  Score=79.52  Aligned_cols=189  Identities=13%  Similarity=0.137  Sum_probs=108.0

Q ss_pred             HhcCCcEEEEcCCCcccCCHHHHhccCC--CeEEEeccCCCcccChHhhcCCCcceeeeccceeeEecCCCCEEEEecCC
Q psy4626         129 VIRTVDIVVTATGNKNVVTREHMDKMKN--GCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIVLLAEG  206 (542)
Q Consensus       129 ~l~~aDvVi~atG~~~lI~~e~l~~mk~--GailvnvG~g~~eid~~aL~~~~l~v~~~~~~v~~y~~~dg~~I~LLa~G  206 (542)
                      .+.++|.++....+  -++++.++.++.  -..+...|.|-+.+|+++..++++.+..+...                  
T Consensus        42 ~~~~~~~~~~~~~~--~~~~~~l~~~~~~~lk~I~~~~~G~d~id~~~~~~~gi~v~n~~~~------------------  101 (332)
T PRK08605         42 EVEGFDGLSLSQQI--PLSEAIYKLLNELGIKQIAQRSAGFDTYDLELATKYNLIISNVPSY------------------  101 (332)
T ss_pred             HhcCCCEEEEecCC--CCCHHHHHhhhhcCceEEEEcccccchhhHHHHHHCCCEEEeCCCC------------------
Confidence            45789987765333  478888988876  35677778887788888887655544432110                  


Q ss_pred             CcccccCCCChhHHHh--hHHHHHHHHHHHHhcCCCCCC--CCccccCChhhHHHHHHhcCCcccc----ccccccHHHH
Q psy4626         207 RLVNLSCSSLPSFVVS--ITACTQALALIELFNAPSGRY--KSDVYLLPKKMDEYVASLHLPTFDA----HLTELSDEQA  278 (542)
Q Consensus       207 rLvnl~~~thp~~vmd--~sfa~q~la~~~L~~~~~~~~--~~gv~~lp~~~d~~VA~l~L~~lg~----~i~~lt~~~a  278 (542)
                         | +. .....++.  ++++.++.......++  +.|  .+...  +       .++...++|+    .|++-.++++
T Consensus       102 ---~-~~-~vAE~~~~~~l~~~R~~~~~~~~~~~--~~~~~~~~~~--~-------~~l~g~~VgIIG~G~IG~~vA~~L  165 (332)
T PRK08605        102 ---S-PE-SIAEFTVTQAINLVRHFNQIQTKVRE--HDFRWEPPIL--S-------RSIKDLKVAVIGTGRIGLAVAKIF  165 (332)
T ss_pred             ---C-hH-HHHHHHHHHHHHHhcChHHHHHHHHh--CCcccccccc--c-------ceeCCCEEEEECCCHHHHHHHHHH
Confidence               0 00 00001111  1112221111111121  222  22110  1       1334455555    7777777776


Q ss_pred             -hhcCCC--CCCCCCCCccccCCee-eeehhhhcccCcEEEEc----cCCCCccCHhHHhcCCCCcEEEccCCCCccccc
Q psy4626         279 -KYMGLN--KAGPFKPSYYSMDGFS-VVKLNEVIRTVDIVVTA----TGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDV  350 (542)
Q Consensus       279 -~~lg~~--e~~p~~a~ea~mdG~~-v~~~~~a~~~~d~~~t~----tg~~~vi~~~~~~~mk~gail~n~gh~~~Ei~~  350 (542)
                       +++|+.  -.||...-+ .-.+.+ +.+++++++++|+|+++    ..++.+++.+.|+.||+|++++|++++.. +|-
T Consensus       166 ~~~~g~~V~~~d~~~~~~-~~~~~~~~~~l~ell~~aDvIvl~lP~t~~t~~li~~~~l~~mk~gailIN~sRG~~-vd~  243 (332)
T PRK08605        166 AKGYGSDVVAYDPFPNAK-AATYVDYKDTIEEAVEGADIVTLHMPATKYNHYLFNADLFKHFKKGAVFVNCARGSL-VDT  243 (332)
T ss_pred             HhcCCCEEEEECCCccHh-HHhhccccCCHHHHHHhCCEEEEeCCCCcchhhhcCHHHHhcCCCCcEEEECCCCcc-cCH
Confidence             677772  334432111 112233 23789999999999983    44678999999999999999999999865 365


Q ss_pred             ccccC
Q psy4626         351 NSLRT  355 (542)
Q Consensus       351 ~~l~~  355 (542)
                      .+|.+
T Consensus       244 ~aL~~  248 (332)
T PRK08605        244 KALLD  248 (332)
T ss_pred             HHHHH
Confidence            55543

>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]

Probab=97.86  E-value=9.5e-05  Score=79.61  Aligned_cols=93  Identities=25%  Similarity=0.345  Sum_probs=74.1

Q ss_pred             cccCcEEEEEcCChhHHHHHHHHHhCCC-EEEEEeCCchhhh-hhhcCCceeeCHHH---HhcCCcEEEEcCCCc-ccCC
Q psy4626          74 MFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICAL-QACMDGFSVVKLNE---VIRTVDIVVTATGNK-NVVT  147 (542)
Q Consensus        74 ~l~GktVvViG~G~IG~~vA~~l~~~Ga-~Viv~d~dp~r~~-~A~~~G~~v~~l~e---~l~~aDvVi~atG~~-~lI~  147 (542)
                      .+.+++|+|+|+|-+|..+|+.|...|. +|+++.+...|+. .|...|..++++++   .+..+|+||.+||.+ ++++
T Consensus       175 ~L~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~~~~~~l~el~~~l~~~DvVissTsa~~~ii~  254 (414)
T COG0373         175 SLKDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLGAEAVALEELLEALAEADVVISSTSAPHPIIT  254 (414)
T ss_pred             ccccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhCCeeecHHHHHHhhhhCCEEEEecCCCccccC
Confidence            4789999999999999999999999996 9999999998876 47778888887765   468999999999865 5567


Q ss_pred             HHHHhcc-C--CCeEEEeccCC
Q psy4626         148 REHMDKM-K--NGCVVCNMGHS  166 (542)
Q Consensus       148 ~e~l~~m-k--~GailvnvG~g  166 (542)
                      .+.+... +  +.-+++..+..
T Consensus       255 ~~~ve~a~~~r~~~livDiavP  276 (414)
T COG0373         255 REMVERALKIRKRLLIVDIAVP  276 (414)
T ss_pred             HHHHHHHHhcccCeEEEEecCC
Confidence            6665543 2  22467787754

>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.84  E-value=7.9e-05  Score=77.11  Aligned_cols=91  Identities=24%  Similarity=0.400  Sum_probs=72.6

Q ss_pred             HHHHHHHHHHhhcCccccCcEEEEEcCCh-hHHHHHHHHHh----CCCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCC
Q psy4626          59 CRESIIDSLKRSTDVMFGGKQVVLCGYGE-VGKGCCQSLKG----LGCVIYITEIDPICALQACMDGFSVVKLNEVIRTV  133 (542)
Q Consensus        59 ~~~s~~~ai~r~~~~~l~GktVvViG~G~-IG~~vA~~l~~----~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~a  133 (542)
                      |-.++++-+ +..+..+.||+|+|+|-+. +|+.++..|..    .|++|++++...             .++.+.++.|
T Consensus       142 Tp~ail~ll-~~y~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~atVt~~hs~t-------------~~l~~~~~~A  207 (295)
T PRK14174        142 TPYGILELL-GRYNIETKGKHCVVVGRSNIVGKPMANLMLQKLKESNCTVTICHSAT-------------KDIPSYTRQA  207 (295)
T ss_pred             CHHHHHHHH-HHhCCCCCCCEEEEECCCCcchHHHHHHHHhccccCCCEEEEEeCCc-------------hhHHHHHHhC
Confidence            344555433 3446789999999999976 69999999876    689999997422             3467788999


Q ss_pred             cEEEEcCCCcccCCHHHHhccCCCeEEEeccCC
Q psy4626         134 DIVVTATGNKNVVTREHMDKMKNGCVVCNMGHS  166 (542)
Q Consensus       134 DvVi~atG~~~lI~~e~l~~mk~GailvnvG~g  166 (542)
                      |++|.++|.+++++.+.+   |+|++++++|..
T Consensus       208 DIvI~Avg~~~li~~~~v---k~GavVIDVgi~  237 (295)
T PRK14174        208 DILIAAIGKARFITADMV---KPGAVVIDVGIN  237 (295)
T ss_pred             CEEEEecCccCccCHHHc---CCCCEEEEeecc
Confidence            999999999999987665   999999999953

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=97.83  E-value=4.2e-05  Score=78.27  Aligned_cols=89  Identities=16%  Similarity=0.262  Sum_probs=67.8

Q ss_pred             EEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce--eeCHHHHhcCCcEEEEcCCCcccCC--HHHHhcc
Q psy4626          79 QVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS--VVKLNEVIRTVDIVVTATGNKNVVT--REHMDKM  154 (542)
Q Consensus        79 tVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~--v~~l~e~l~~aDvVi~atG~~~lI~--~e~l~~m  154 (542)
                      +|+|+|+|.+|..+|..|+..|.+|+++|+++.....+...|..  ..+..+.++++|+||.|+....+..  ++....+
T Consensus         2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~aDlVilavp~~~~~~~~~~l~~~l   81 (279)
T PRK07417          2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAIERGLVDEASTDLSLLKDCDLVILALPIGLLLPPSEQLIPAL   81 (279)
T ss_pred             eEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCcccccCCHhHhcCCCEEEEcCCHHHHHHHHHHHHHhC
Confidence            69999999999999999999999999999998877666666642  2222346789999999975332221  3445567


Q ss_pred             CCCeEEEeccCCC
Q psy4626         155 KNGCVVCNMGHSN  167 (542)
Q Consensus       155 k~GailvnvG~g~  167 (542)
                      +++++++++|.-.
T Consensus        82 ~~~~ii~d~~Svk   94 (279)
T PRK07417         82 PPEAIVTDVGSVK   94 (279)
T ss_pred             CCCcEEEeCcchH
Confidence            8899999988754

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=97.82  E-value=5.9e-05  Score=78.12  Aligned_cols=91  Identities=21%  Similarity=0.304  Sum_probs=69.6

Q ss_pred             CcEEEEEcCChhHHHHHHHHHhCCC--EEEEEeCCchhhhhhhcCCce---eeCHHHHhcCCcEEEEcCCCccc--CCHH
Q psy4626          77 GKQVVLCGYGEVGKGCCQSLKGLGC--VIYITEIDPICALQACMDGFS---VVKLNEVIRTVDIVVTATGNKNV--VTRE  149 (542)
Q Consensus        77 GktVvViG~G~IG~~vA~~l~~~Ga--~Viv~d~dp~r~~~A~~~G~~---v~~l~e~l~~aDvVi~atG~~~l--I~~e  149 (542)
                      -++|+|+|+|.+|..++..++..|.  +|+++|+++.+...+...|..   ..+.++.+.++|+||.|+.....  +-.+
T Consensus         6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvViiavp~~~~~~v~~~   85 (307)
T PRK07502          6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGLGDRVTTSAAEAVKGADLVILCVPVGASGAVAAE   85 (307)
T ss_pred             CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCceecCCHHHHhcCCCEEEECCCHHHHHHHHHH
Confidence            4689999999999999999998885  899999998877666666642   23566778899999999864322  1123


Q ss_pred             HHhccCCCeEEEeccCCC
Q psy4626         150 HMDKMKNGCVVCNMGHSN  167 (542)
Q Consensus       150 ~l~~mk~GailvnvG~g~  167 (542)
                      ....++++++++++|...
T Consensus        86 l~~~l~~~~iv~dvgs~k  103 (307)
T PRK07502         86 IAPHLKPGAIVTDVGSVK  103 (307)
T ss_pred             HHhhCCCCCEEEeCccch
Confidence            445678999999988654

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=97.81  E-value=8.1e-05  Score=78.04  Aligned_cols=88  Identities=13%  Similarity=0.171  Sum_probs=62.6

Q ss_pred             cEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhc-----------CC----c-----e-eeCHHHHhcCCcEE
Q psy4626          78 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACM-----------DG----F-----S-VVKLNEVIRTVDIV  136 (542)
Q Consensus        78 ktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~-----------~G----~-----~-v~~l~e~l~~aDvV  136 (542)
                      ++|+|+|+|.+|.++|..+...|.+|+++|++|.....+..           .|    .     . +.++++++.+||+|
T Consensus         8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av~~aDlV   87 (321)
T PRK07066          8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVADADFI   87 (321)
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHhcCCCEE
Confidence            68999999999999999999999999999999865332111           11    0     1 23567888999999


Q ss_pred             EEcCCCc----ccCCHHHHhccCCCeEEEeccC
Q psy4626         137 VTATGNK----NVVTREHMDKMKNGCVVCNMGH  165 (542)
Q Consensus       137 i~atG~~----~lI~~e~l~~mk~GailvnvG~  165 (542)
                      +++.-..    ..+-++.-+.+++++++.+..+
T Consensus        88 iEavpE~l~vK~~lf~~l~~~~~~~aIlaSnTS  120 (321)
T PRK07066         88 QESAPEREALKLELHERISRAAKPDAIIASSTS  120 (321)
T ss_pred             EECCcCCHHHHHHHHHHHHHhCCCCeEEEECCC
Confidence            9986421    1121344567799997774333

>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase

Probab=97.80  E-value=0.00012  Score=77.36  Aligned_cols=92  Identities=27%  Similarity=0.296  Sum_probs=73.0

Q ss_pred             cccCcEEEEEcCChhHHHHHHHHHhCCC-EEEEEeCCchhhhhhhcCCce-eeCH-------HHHh-----cCCcEEEEc
Q psy4626          74 MFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMDGFS-VVKL-------NEVI-----RTVDIVVTA  139 (542)
Q Consensus        74 ~l~GktVvViG~G~IG~~vA~~l~~~Ga-~Viv~d~dp~r~~~A~~~G~~-v~~l-------~e~l-----~~aDvVi~a  139 (542)
                      ...|++|+|.|.|.+|..+++.++.+|+ +|++++.++.+...+...|++ +++.       .+.+     .+.|+|+++
T Consensus       182 ~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~~g~d~vid~  261 (365)
T cd08277         182 VEPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKEFGATDFINPKDSDKPVSEVIREMTGGGVDYSFEC  261 (365)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCCcEeccccccchHHHHHHHHhCCCCCEEEEC
Confidence            4579999999999999999999999999 799999988888777777764 2221       1211     368999999


Q ss_pred             CCCcccCCHHHHhccCCC-eEEEeccCC
Q psy4626         140 TGNKNVVTREHMDKMKNG-CVVCNMGHS  166 (542)
Q Consensus       140 tG~~~lI~~e~l~~mk~G-ailvnvG~g  166 (542)
                      +|....+. +.++.++++ +.++.+|..
T Consensus       262 ~g~~~~~~-~~~~~l~~~~G~~v~~g~~  288 (365)
T cd08277         262 TGNADLMN-EALESTKLGWGVSVVVGVP  288 (365)
T ss_pred             CCChHHHH-HHHHhcccCCCEEEEEcCC
Confidence            99766664 688999875 899988865

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i

>KOG0023|consensus

Probab=97.79  E-value=4.9e-05  Score=78.61  Aligned_cols=121  Identities=18%  Similarity=0.208  Sum_probs=84.9

Q ss_pred             HHHHHHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhc-CCcee--eCH------HHHh
Q psy4626          60 RESIIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACM-DGFSV--VKL------NEVI  130 (542)
Q Consensus        60 ~~s~~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~-~G~~v--~~l------~e~l  130 (542)
                      |-.++.++++. +.. +|+.++|+|+|-+|....+.++++|++|++.+.+..+.+++.. +|++.  ...      +++.
T Consensus       167 GITvYspLk~~-g~~-pG~~vgI~GlGGLGh~aVq~AKAMG~rV~vis~~~~kkeea~~~LGAd~fv~~~~d~d~~~~~~  244 (360)
T KOG0023|consen  167 GITVYSPLKRS-GLG-PGKWVGIVGLGGLGHMAVQYAKAMGMRVTVISTSSKKKEEAIKSLGADVFVDSTEDPDIMKAIM  244 (360)
T ss_pred             ceEEeehhHHc-CCC-CCcEEEEecCcccchHHHHHHHHhCcEEEEEeCCchhHHHHHHhcCcceeEEecCCHHHHHHHH
Confidence            34455566665 333 9999999999999999999999999999999988866666655 78762  222      2334


Q ss_pred             cCCcEEEEcCC--CcccCCHHHHhccCCCeEEEeccCCCc--ccChHhhcCCCccee
Q psy4626         131 RTVDIVVTATG--NKNVVTREHMDKMKNGCVVCNMGHSNT--EIDVNSLRTPDLTWE  183 (542)
Q Consensus       131 ~~aDvVi~atG--~~~lI~~e~l~~mk~GailvnvG~g~~--eid~~aL~~~~l~v~  183 (542)
                      ..-|.+++++-  ..+.+. ..+..||.++.++.+|....  .+++..|.-+.+.+.
T Consensus       245 ~~~dg~~~~v~~~a~~~~~-~~~~~lk~~Gt~V~vg~p~~~~~~~~~~lil~~~~I~  300 (360)
T KOG0023|consen  245 KTTDGGIDTVSNLAEHALE-PLLGLLKVNGTLVLVGLPEKPLKLDTFPLILGRKSIK  300 (360)
T ss_pred             HhhcCcceeeeeccccchH-HHHHHhhcCCEEEEEeCcCCcccccchhhhcccEEEE
Confidence            55566666654  555664 68999999999999998753  333444443333333

>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=97.79  E-value=7.2e-05  Score=77.35  Aligned_cols=88  Identities=17%  Similarity=0.250  Sum_probs=69.6

Q ss_pred             EEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCcee-eCHHHHhcC---CcEEEEcCCCc----ccCCHHH
Q psy4626          79 QVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV-VKLNEVIRT---VDIVVTATGNK----NVVTREH  150 (542)
Q Consensus        79 tVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v-~~l~e~l~~---aDvVi~atG~~----~lI~~e~  150 (542)
                      +|+|||+|.+|..+|+.+...|.+|++||+++.+.......|... .+++++++.   +|+|+.|+.+.    .++ .+.
T Consensus         2 ~Ig~IGlG~mG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~s~~~~~~~~~~advVi~~vp~~~~~~~v~-~~i   80 (299)
T PRK12490          2 KLGLIGLGKMGGNMAERLREDGHEVVGYDVNQEAVDVAGKLGITARHSLEELVSKLEAPRTIWVMVPAGEVTESVI-KDL   80 (299)
T ss_pred             EEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHCCCeecCCHHHHHHhCCCCCEEEEEecCchHHHHHH-HHH
Confidence            699999999999999999999999999999998876666667654 366777655   69999987654    223 245


Q ss_pred             HhccCCCeEEEeccCCC
Q psy4626         151 MDKMKNGCVVCNMGHSN  167 (542)
Q Consensus       151 l~~mk~GailvnvG~g~  167 (542)
                      +..+++|.++++++...
T Consensus        81 ~~~l~~g~ivid~st~~   97 (299)
T PRK12490         81 YPLLSPGDIVVDGGNSR   97 (299)
T ss_pred             hccCCCCCEEEECCCCC
Confidence            56688999999998764

>PLN00203 glutamyl-tRNA reductase

Probab=97.79  E-value=8.9e-05  Score=82.43  Aligned_cols=92  Identities=15%  Similarity=0.239  Sum_probs=70.1

Q ss_pred             ccCcEEEEEcCChhHHHHHHHHHhCCC-EEEEEeCCchhhhhhh-cC-Cc--eee---CHHHHhcCCcEEEEcCCC-ccc
Q psy4626          75 FGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQAC-MD-GF--SVV---KLNEVIRTVDIVVTATGN-KNV  145 (542)
Q Consensus        75 l~GktVvViG~G~IG~~vA~~l~~~Ga-~Viv~d~dp~r~~~A~-~~-G~--~v~---~l~e~l~~aDvVi~atG~-~~l  145 (542)
                      +.+++|+|+|+|.+|+.+++.|...|+ +|+++++++.+..... .. +.  .+.   ++.+++.++|+||+||+. .++
T Consensus       264 l~~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~g~~i~~~~~~dl~~al~~aDVVIsAT~s~~pv  343 (519)
T PLN00203        264 HASARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFPDVEIIYKPLDEMLACAAEADVVFTSTSSETPL  343 (519)
T ss_pred             CCCCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhCCCceEeecHhhHHHHHhcCCEEEEccCCCCCe
Confidence            678999999999999999999999998 7999999988765322 22 32  222   344567899999999874 457


Q ss_pred             CCHHHHhccCCC-------eEEEeccCC
Q psy4626         146 VTREHMDKMKNG-------CVVCNMGHS  166 (542)
Q Consensus       146 I~~e~l~~mk~G-------ailvnvG~g  166 (542)
                      +.++.++.++++       -++++.+..
T Consensus       344 I~~e~l~~~~~~~~~~~~~~~~IDLAvP  371 (519)
T PLN00203        344 FLKEHVEALPPASDTVGGKRLFVDISVP  371 (519)
T ss_pred             eCHHHHHHhhhcccccCCCeEEEEeCCC
Confidence            888888877432       367788864

>PLN03154 putative allyl alcohol dehydrogenase; Provisional

Probab=97.77  E-value=0.00018  Score=75.71  Aligned_cols=103  Identities=17%  Similarity=0.152  Sum_probs=77.0

Q ss_pred             HHHHHHHHhhcCccccCcEEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCchhhhhhh-cCCce-eeC------HHHHh-
Q psy4626          61 ESIIDSLKRSTDVMFGGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQAC-MDGFS-VVK------LNEVI-  130 (542)
Q Consensus        61 ~s~~~ai~r~~~~~l~GktVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~-~~G~~-v~~------l~e~l-  130 (542)
                      ...|+++.... ...+|++|+|.|. |.+|..+++.++.+|++|++++.++.+...+. ..|++ +++      ..+.+ 
T Consensus       144 ~TA~~al~~~~-~~~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~~~~lGa~~vi~~~~~~~~~~~i~  222 (348)
T PLN03154        144 FTAYAGFYEVC-SPKKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLLKNKLGFDEAFNYKEEPDLDAALK  222 (348)
T ss_pred             HHHHHHHHHhc-CCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhcCCCEEEECCCcccHHHHHH
Confidence            34456654332 2457999999999 99999999999999999999988887766554 56764 222      22222 


Q ss_pred             ----cCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCC
Q psy4626         131 ----RTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHS  166 (542)
Q Consensus       131 ----~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g  166 (542)
                          .+.|++++++|.. .+ .+.++.+++++.++.+|..
T Consensus       223 ~~~~~gvD~v~d~vG~~-~~-~~~~~~l~~~G~iv~~G~~  260 (348)
T PLN03154        223 RYFPEGIDIYFDNVGGD-ML-DAALLNMKIHGRIAVCGMV  260 (348)
T ss_pred             HHCCCCcEEEEECCCHH-HH-HHHHHHhccCCEEEEECcc
Confidence                3689999999864 44 4789999999999999864

>PLN02712 arogenate dehydrogenase

Probab=97.77  E-value=8.4e-05  Score=85.07  Aligned_cols=95  Identities=11%  Similarity=0.158  Sum_probs=71.0

Q ss_pred             CccccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCcee-eCHHHHhc-CCcEEEEcCCC---cccC
Q psy4626          72 DVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV-VKLNEVIR-TVDIVVTATGN---KNVV  146 (542)
Q Consensus        72 ~~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v-~~l~e~l~-~aDvVi~atG~---~~lI  146 (542)
                      +....+++|+|||+|.||..+|+.++..|.+|+++|+++.. ..+...|+.. .++++++. .+|+||.|+-.   ..++
T Consensus       364 ~~~~~~~kIgIIGlG~mG~slA~~L~~~G~~V~~~dr~~~~-~~a~~~Gv~~~~~~~el~~~~aDvVILavP~~~~~~vi  442 (667)
T PLN02712        364 VNDGSKLKIAIVGFGNFGQFLAKTMVKQGHTVLAYSRSDYS-DEAQKLGVSYFSDADDLCEEHPEVILLCTSILSTEKVL  442 (667)
T ss_pred             cCCCCCCEEEEEecCHHHHHHHHHHHHCcCEEEEEECChHH-HHHHHcCCeEeCCHHHHHhcCCCEEEECCChHHHHHHH
Confidence            34567899999999999999999999999999999988643 3455567643 35677664 58999999642   3333


Q ss_pred             CHHHHhccCCCeEEEeccCCC
Q psy4626         147 TREHMDKMKNGCVVCNMGHSN  167 (542)
Q Consensus       147 ~~e~l~~mk~GailvnvG~g~  167 (542)
                      ..-....+|+|+++++++...
T Consensus       443 ~~l~~~~lk~g~ivvDv~SvK  463 (667)
T PLN02712        443 KSLPFQRLKRSTLFVDVLSVK  463 (667)
T ss_pred             HHHHHhcCCCCcEEEECCCcc
Confidence            211223588999999999875

>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases

Probab=97.75  E-value=7.4e-05  Score=78.90  Aligned_cols=92  Identities=25%  Similarity=0.299  Sum_probs=73.4

Q ss_pred             cccCcEEEEEcCChhHHHHHHHHHhCCC-EEEEEeCCchhhhhhhcCCce-eeCH-------HHHh-----cCCcEEEEc
Q psy4626          74 MFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMDGFS-VVKL-------NEVI-----RTVDIVVTA  139 (542)
Q Consensus        74 ~l~GktVvViG~G~IG~~vA~~l~~~Ga-~Viv~d~dp~r~~~A~~~G~~-v~~l-------~e~l-----~~aDvVi~a  139 (542)
                      ...|++|+|.|.|.+|..+++.++.+|+ +|++++.++.+...+...|++ +++.       .+.+     .++|+|+++
T Consensus       184 ~~~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~v~~~~~~g~d~vid~  263 (368)
T cd08300         184 VEPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAKKFGATDCVNPKDHDKPIQQVLVEMTDGGVDYTFEC  263 (368)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCCEEEcccccchHHHHHHHHHhCCCCcEEEEC
Confidence            3579999999999999999999999999 799999999888877777764 2321       1211     268999999


Q ss_pred             CCCcccCCHHHHhccCCC-eEEEeccCC
Q psy4626         140 TGNKNVVTREHMDKMKNG-CVVCNMGHS  166 (542)
Q Consensus       140 tG~~~lI~~e~l~~mk~G-ailvnvG~g  166 (542)
                      +|....+. +.++.++++ +.++.+|..
T Consensus       264 ~g~~~~~~-~a~~~l~~~~G~~v~~g~~  290 (368)
T cd08300         264 IGNVKVMR-AALEACHKGWGTSVIIGVA  290 (368)
T ss_pred             CCChHHHH-HHHHhhccCCCeEEEEccC
Confidence            99765664 688999876 888888854

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim

>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional

Probab=97.75  E-value=2.4e-05  Score=81.67  Aligned_cols=93  Identities=9%  Similarity=0.112  Sum_probs=68.3

Q ss_pred             hcCCcccc----ccccccHHHHhhcCCC--CCCCCCCCccccC-CeeeeehhhhcccCcEEEE----ccCCCCccCHhHH
Q psy4626         261 LHLPTFDA----HLTELSDEQAKYMGLN--KAGPFKPSYYSMD-GFSVVKLNEVIRTVDIVVT----ATGNKNVVTREHM  329 (542)
Q Consensus       261 l~L~~lg~----~i~~lt~~~a~~lg~~--e~~p~~a~ea~md-G~~v~~~~~a~~~~d~~~t----~tg~~~vi~~~~~  329 (542)
                      +..+++|+    .|++-.+++++++|+.  -.||.+.-..-.+ -+...+++++++++|+|++    +..++++|+.+.|
T Consensus       134 l~g~tvgIvG~G~IG~~vA~~l~afG~~V~~~~~~~~~~~~~~~~~~~~~l~e~l~~aDvvv~~lPlt~~T~~li~~~~l  213 (312)
T PRK15469        134 REDFTIGILGAGVLGSKVAQSLQTWGFPLRCWSRSRKSWPGVQSFAGREELSAFLSQTRVLINLLPNTPETVGIINQQLL  213 (312)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCCCCceeecccccHHHHHhcCCEEEECCCCCHHHHHHhHHHHH
Confidence            34566666    8898899999999994  2344332111011 1223478999999999999    6678999999999


Q ss_pred             hcCCCCcEEEccCCCCccccccccc
Q psy4626         330 DKMKNGCVVCNMGHSNTEIDVNSLR  354 (542)
Q Consensus       330 ~~mk~gail~n~gh~~~Ei~~~~l~  354 (542)
                      ++||+||+|+|+||+.+= |-++|-
T Consensus       214 ~~mk~ga~lIN~aRG~vV-de~aL~  237 (312)
T PRK15469        214 EQLPDGAYLLNLARGVHV-VEDDLL  237 (312)
T ss_pred             hcCCCCcEEEECCCcccc-CHHHHH
Confidence            999999999999999873 544443

>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=97.74  E-value=0.00011  Score=75.96  Aligned_cols=88  Identities=18%  Similarity=0.216  Sum_probs=69.6

Q ss_pred             EEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceee-CHHHHhcC---CcEEEEcCCCc----ccCCHHH
Q psy4626          79 QVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVV-KLNEVIRT---VDIVVTATGNK----NVVTREH  150 (542)
Q Consensus        79 tVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~-~l~e~l~~---aDvVi~atG~~----~lI~~e~  150 (542)
                      +|+|+|+|.+|..+|+.|...|.+|++||+++.+.......|..+. +++++++.   +|+|+.+..+.    .++ ...
T Consensus         2 ~Ig~IGlG~MG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~~~~e~~~~~~~~dvvi~~v~~~~~~~~v~-~~l   80 (301)
T PRK09599          2 QLGMIGLGRMGGNMARRLLRGGHEVVGYDRNPEAVEALAEEGATGADSLEELVAKLPAPRVVWLMVPAGEITDATI-DEL   80 (301)
T ss_pred             EEEEEcccHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCeecCCHHHHHhhcCCCCEEEEEecCCcHHHHHH-HHH
Confidence            6999999999999999999999999999999988766666777654 56777654   69999976443    223 245


Q ss_pred             HhccCCCeEEEeccCCC
Q psy4626         151 MDKMKNGCVVCNMGHSN  167 (542)
Q Consensus       151 l~~mk~GailvnvG~g~  167 (542)
                      +..+++|.++++++...
T Consensus        81 ~~~l~~g~ivid~st~~   97 (301)
T PRK09599         81 APLLSPGDIVIDGGNSY   97 (301)
T ss_pred             HhhCCCCCEEEeCCCCC
Confidence            56788999999988764

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=97.71  E-value=8.8e-05  Score=76.16  Aligned_cols=90  Identities=19%  Similarity=0.288  Sum_probs=64.8

Q ss_pred             cEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhc-------CC-----------------ce-eeCHHHHhcC
Q psy4626          78 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACM-------DG-----------------FS-VVKLNEVIRT  132 (542)
Q Consensus        78 ktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~-------~G-----------------~~-v~~l~e~l~~  132 (542)
                      ++|+|+|.|.+|..+|..+...|.+|+++|+++.+...+..       .+                 .. ..++++++++
T Consensus         2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~   81 (288)
T PRK09260          2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAVAD   81 (288)
T ss_pred             cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhhcC
Confidence            47999999999999999999999999999999877554321       11                 11 2356678899


Q ss_pred             CcEEEEcCCCcccCC----HHHHhccCCCeEE-EeccCCC
Q psy4626         133 VDIVVTATGNKNVVT----REHMDKMKNGCVV-CNMGHSN  167 (542)
Q Consensus       133 aDvVi~atG~~~lI~----~e~l~~mk~Gail-vnvG~g~  167 (542)
                      +|+||+|.....-+.    .+..+.+++++++ +|++..+
T Consensus        82 aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt~~  121 (288)
T PRK09260         82 ADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTMS  121 (288)
T ss_pred             CCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCC
Confidence            999999876543222    1234556888877 5777543

>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD)

Probab=97.71  E-value=0.00034  Score=72.51  Aligned_cols=102  Identities=15%  Similarity=0.156  Sum_probs=77.2

Q ss_pred             HHHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce-eeC-----HHHH---hcCC
Q psy4626          63 IIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVK-----LNEV---IRTV  133 (542)
Q Consensus        63 ~~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~-v~~-----l~e~---l~~a  133 (542)
                      .++++...  ....|++|+|.|.|.+|..+++.++.+|++|++++.++.+...+...|.. +++     ..+.   +.+.
T Consensus       152 a~~~~~~~--~~~~~~~vlV~g~g~iG~~~~~~a~~~G~~vi~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~  229 (333)
T cd08296         152 TFNALRNS--GAKPGDLVAVQGIGGLGHLAVQYAAKMGFRTVAISRGSDKADLARKLGAHHYIDTSKEDVAEALQELGGA  229 (333)
T ss_pred             HHHHHHhc--CCCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcCCcEEecCCCccHHHHHHhcCCC
Confidence            35555443  24578999999999999999999999999999999888777767666753 222     1111   2468


Q ss_pred             cEEEEcCCCcccCCHHHHhccCCCeEEEeccCCC
Q psy4626         134 DIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSN  167 (542)
Q Consensus       134 DvVi~atG~~~lI~~e~l~~mk~GailvnvG~g~  167 (542)
                      |++++++|....+. +.++.+++++.++.+|...
T Consensus       230 d~vi~~~g~~~~~~-~~~~~l~~~G~~v~~g~~~  262 (333)
T cd08296         230 KLILATAPNAKAIS-ALVGGLAPRGKLLILGAAG  262 (333)
T ss_pred             CEEEECCCchHHHH-HHHHHcccCCEEEEEecCC
Confidence            99999987555553 6899999999999998653

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal

>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase

Probab=97.70  E-value=0.00025  Score=73.24  Aligned_cols=103  Identities=19%  Similarity=0.136  Sum_probs=77.2

Q ss_pred             HHHHHHHHhhcCccccCcEEEEEc-CChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce-eeC------HHHHh--
Q psy4626          61 ESIIDSLKRSTDVMFGGKQVVLCG-YGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVK------LNEVI--  130 (542)
Q Consensus        61 ~s~~~ai~r~~~~~l~GktVvViG-~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~-v~~------l~e~l--  130 (542)
                      ...|+++.+.. ...+|++|+|.| .|.+|..+++.++.+|++|++++.++.+...+...|++ +++      ..+.+  
T Consensus       124 ~TA~~~l~~~~-~~~~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~  202 (325)
T TIGR02825       124 LTAYFGLLEIC-GVKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVAYLKKLGFDVAFNYKTVKSLEETLKK  202 (325)
T ss_pred             HHHHHHHHHHh-CCCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCEEEeccccccHHHHHHH
Confidence            34455543332 245799999999 49999999999999999999998888887777777764 222      22221  


Q ss_pred             ---cCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCC
Q psy4626         131 ---RTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHS  166 (542)
Q Consensus       131 ---~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g  166 (542)
                         .+.|++++++|... + .+.++.+++++.++..|..
T Consensus       203 ~~~~gvdvv~d~~G~~~-~-~~~~~~l~~~G~iv~~G~~  239 (325)
T TIGR02825       203 ASPDGYDCYFDNVGGEF-S-NTVIGQMKKFGRIAICGAI  239 (325)
T ss_pred             hCCCCeEEEEECCCHHH-H-HHHHHHhCcCcEEEEecch
Confidence               36899999998754 4 4789999999999998854

Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.

>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1

Probab=97.70  E-value=0.00022  Score=71.22  Aligned_cols=87  Identities=22%  Similarity=0.397  Sum_probs=63.8

Q ss_pred             CccccCcEEEEEcCChhHHHHHHHHHhCCCEEE-EEeC----------Cchhhhhhhc-CC-------ceeeCHHHHh-c
Q psy4626          72 DVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIY-ITEI----------DPICALQACM-DG-------FSVVKLNEVI-R  131 (542)
Q Consensus        72 ~~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Vi-v~d~----------dp~r~~~A~~-~G-------~~v~~l~e~l-~  131 (542)
                      +..+.|++|+|.|+|.||+.+|+.|..+|++|+ +.|.          |+........ .|       ...++.++.+ .
T Consensus        26 ~~~l~~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~~g~~~~~~Gld~~~l~~~~~~~g~l~~~~~~~~~~~~~i~~~  105 (227)
T cd01076          26 GIGLAGARVAIQGFGNVGSHAARFLHEAGAKVVAVSDSDGTIYNPDGLDVPALLAYKKEHGSVLGFPGAERITNEELLEL  105 (227)
T ss_pred             CCCccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCCcccCCCceecCCccceee
Confidence            356899999999999999999999999999999 7787          5554443222 12       1223444444 5


Q ss_pred             CCcEEEEcCCCcccCCHHHHhccCCCeEEE
Q psy4626         132 TVDIVVTATGNKNVVTREHMDKMKNGCVVC  161 (542)
Q Consensus       132 ~aDvVi~atG~~~lI~~e~l~~mk~Gailv  161 (542)
                      .+||++.|+ ..+.++.+....++  +.+|
T Consensus       106 ~~Dvlip~a-~~~~i~~~~~~~l~--a~~I  132 (227)
T cd01076         106 DCDILIPAA-LENQITADNADRIK--AKII  132 (227)
T ss_pred             cccEEEecC-ccCccCHHHHhhce--eeEE
Confidence            899999998 55688988888887  4444

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids

>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase

Probab=97.69  E-value=0.00018  Score=75.83  Aligned_cols=93  Identities=26%  Similarity=0.340  Sum_probs=74.0

Q ss_pred             cccCcEEEEEcCChhHHHHHHHHHhCCC-EEEEEeCCchhhhhhhcCCce-eeCH-------HHHh-----cCCcEEEEc
Q psy4626          74 MFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMDGFS-VVKL-------NEVI-----RTVDIVVTA  139 (542)
Q Consensus        74 ~l~GktVvViG~G~IG~~vA~~l~~~Ga-~Viv~d~dp~r~~~A~~~G~~-v~~l-------~e~l-----~~aDvVi~a  139 (542)
                      ..+|++|+|.|.|.+|+.+++.++.+|+ +|++++.++.+...+...|+. +++.       .+.+     .++|+++++
T Consensus       185 ~~~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~v~~~~~~~~d~vid~  264 (369)
T cd08301         185 VKKGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAKKFGVTEFVNPKDHDKPVQEVIAEMTGGGVDYSFEC  264 (369)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEEcccccchhHHHHHHHHhCCCCCEEEEC
Confidence            4579999999999999999999999999 899999999888878777764 2221       1212     258999999


Q ss_pred             CCCcccCCHHHHhccCCC-eEEEeccCCC
Q psy4626         140 TGNKNVVTREHMDKMKNG-CVVCNMGHSN  167 (542)
Q Consensus       140 tG~~~lI~~e~l~~mk~G-ailvnvG~g~  167 (542)
                      +|....+. +.+..++++ +.++.+|...
T Consensus       265 ~G~~~~~~-~~~~~~~~~~g~~v~~g~~~  292 (369)
T cd08301         265 TGNIDAMI-SAFECVHDGWGVTVLLGVPH  292 (369)
T ss_pred             CCChHHHH-HHHHHhhcCCCEEEEECcCC
Confidence            98765554 678889996 8999888653

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the

>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase

Probab=97.68  E-value=0.00036  Score=72.82  Aligned_cols=118  Identities=19%  Similarity=0.217  Sum_probs=83.3

Q ss_pred             HHHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCCC-EEEEEeCCchhhhhhhcCCce-eeC-----HHH----Hh-
Q psy4626          63 IIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMDGFS-VVK-----LNE----VI-  130 (542)
Q Consensus        63 ~~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga-~Viv~d~dp~r~~~A~~~G~~-v~~-----l~e----~l-  130 (542)
                      .|+++...  ....|++|+|.|.|.+|..+++.++.+|+ +|++++.++.+...+...|.+ +++     ..+    .. 
T Consensus       161 a~~~l~~~--~~~~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~l~~~~~  238 (351)
T cd08233         161 AWHAVRRS--GFKPGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEELGATIVLDPTEVDVVAEVRKLTG  238 (351)
T ss_pred             HHHHHHhc--CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEECCCccCHHHHHHHHhC
Confidence            45555333  24579999999999999999999999999 899998888877666566664 222     111    22 


Q ss_pred             -cCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCCC--cccChHhhcCCCccee
Q psy4626         131 -RTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSN--TEIDVNSLRTPDLTWE  183 (542)
Q Consensus       131 -~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g~--~eid~~aL~~~~l~v~  183 (542)
                       .+.|++++++|....+ .+.++.+++++.++.+|...  ..++...+..+++++.
T Consensus       239 ~~~~d~vid~~g~~~~~-~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~  293 (351)
T cd08233         239 GGGVDVSFDCAGVQATL-DTAIDALRPRGTAVNVAIWEKPISFNPNDLVLKEKTLT  293 (351)
T ss_pred             CCCCCEEEECCCCHHHH-HHHHHhccCCCEEEEEccCCCCCccCHHHHHhhCcEEE
Confidence             2599999999865555 36889999999999998753  3344433333344433

(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.

>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]

Probab=97.65  E-value=0.00013  Score=74.97  Aligned_cols=91  Identities=25%  Similarity=0.372  Sum_probs=71.3

Q ss_pred             cccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchh-hhhhhcCCceeeCHHHHhcCCcEEEEcCCC---cccCCHH
Q psy4626          74 MFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPIC-ALQACMDGFSVVKLNEVIRTVDIVVTATGN---KNVVTRE  149 (542)
Q Consensus        74 ~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r-~~~A~~~G~~v~~l~e~l~~aDvVi~atG~---~~lI~~e  149 (542)
                      .+.||+|+|||||.-|..-|..||..|.+|++-=+.... -..|..+|+.+.+.+++++.||+|..-+..   +.+...+
T Consensus        15 ~LkgK~iaIIGYGsQG~ahalNLRDSGlnViiGlr~g~~s~~kA~~dGf~V~~v~ea~k~ADvim~L~PDe~q~~vy~~~   94 (338)
T COG0059          15 LLKGKKVAIIGYGSQGHAQALNLRDSGLNVIIGLRKGSSSWKKAKEDGFKVYTVEEAAKRADVVMILLPDEQQKEVYEKE   94 (338)
T ss_pred             HhcCCeEEEEecChHHHHHHhhhhhcCCcEEEEecCCchhHHHHHhcCCEeecHHHHhhcCCEEEEeCchhhHHHHHHHH
Confidence            578999999999999999999999999998885433322 456889999999999999999999986532   2233334


Q ss_pred             HHhccCCCeEEEecc
Q psy4626         150 HMDKMKNGCVVCNMG  164 (542)
Q Consensus       150 ~l~~mk~GailvnvG  164 (542)
                      .-..|+.|..+...-
T Consensus        95 I~p~Lk~G~aL~FaH  109 (338)
T COG0059          95 IAPNLKEGAALGFAH  109 (338)
T ss_pred             hhhhhcCCceEEecc
Confidence            456789999776533

>PLN02256 arogenate dehydrogenase

Probab=97.64  E-value=0.00017  Score=75.02  Aligned_cols=90  Identities=14%  Similarity=0.188  Sum_probs=67.5

Q ss_pred             ccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCcee-eCHHHHh-cCCcEEEEcCCCc---ccCCHH
Q psy4626          75 FGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV-VKLNEVI-RTVDIVVTATGNK---NVVTRE  149 (542)
Q Consensus        75 l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v-~~l~e~l-~~aDvVi~atG~~---~lI~~e  149 (542)
                      -.+.+++|+|+|.+|..++..++..|.+|+++++++.. ..+...|+.. .+.++++ ..+|+||.|+...   .++. +
T Consensus        34 ~~~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~~~-~~a~~~gv~~~~~~~e~~~~~aDvVilavp~~~~~~vl~-~  111 (304)
T PLN02256         34 SRKLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSDYS-DIAAELGVSFFRDPDDFCEEHPDVVLLCTSILSTEAVLR-S  111 (304)
T ss_pred             CCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECccHH-HHHHHcCCeeeCCHHHHhhCCCCEEEEecCHHHHHHHHH-h
Confidence            35789999999999999999999999999999988743 3455566643 3566665 4799999997533   2232 2


Q ss_pred             H-HhccCCCeEEEeccCC
Q psy4626         150 H-MDKMKNGCVVCNMGHS  166 (542)
Q Consensus       150 ~-l~~mk~GailvnvG~g  166 (542)
                      . ...+++++++++++..
T Consensus       112 l~~~~l~~~~iviDv~Sv  129 (304)
T PLN02256        112 LPLQRLKRSTLFVDVLSV  129 (304)
T ss_pred             hhhhccCCCCEEEecCCc
Confidence            2 3457899999999985

>PRK07340 ornithine cyclodeaminase; Validated

Probab=97.63  E-value=0.00024  Score=73.86  Aligned_cols=98  Identities=19%  Similarity=0.242  Sum_probs=74.4

Q ss_pred             ccCcEEEEEcCChhHHHHHHHHHh-CCC-EEEEEeCCchhhhhh-hc---CCce--eeCHHHHhcCCcEEEEcCC-Cccc
Q psy4626          75 FGGKQVVLCGYGEVGKGCCQSLKG-LGC-VIYITEIDPICALQA-CM---DGFS--VVKLNEVIRTVDIVVTATG-NKNV  145 (542)
Q Consensus        75 l~GktVvViG~G~IG~~vA~~l~~-~Ga-~Viv~d~dp~r~~~A-~~---~G~~--v~~l~e~l~~aDvVi~atG-~~~l  145 (542)
                      ...++++|+|+|..|+..+..+.. ++. +|.++++++.++... ..   .++.  +.+.++++.++|+||+||. ..++
T Consensus       123 ~~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~~~~~~~~~~~~av~~aDiVitaT~s~~Pl  202 (304)
T PRK07340        123 APPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARALGPTAEPLDGEAIPEAVDLVVTATTSRTPV  202 (304)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCCeeEECCHHHHhhcCCEEEEccCCCCce
Confidence            357899999999999999999864 675 899999999875432 11   2333  3467888999999999876 4466


Q ss_pred             CCHHHHhccCCCeEEEeccCC---CcccChHhhc
Q psy4626         146 VTREHMDKMKNGCVVCNMGHS---NTEIDVNSLR  176 (542)
Q Consensus       146 I~~e~l~~mk~GailvnvG~g---~~eid~~aL~  176 (542)
                      +..    .+|+|+.+..+|..   ..|+|.+-+.
T Consensus       203 ~~~----~~~~g~hi~~iGs~~p~~~El~~~~~~  232 (304)
T PRK07340        203 YPE----AARAGRLVVAVGAFTPDMAELAPRTVR  232 (304)
T ss_pred             eCc----cCCCCCEEEecCCCCCCcccCCHHHHh
Confidence            652    37999999999976   3688876555

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=97.62  E-value=0.00022  Score=60.59  Aligned_cols=84  Identities=19%  Similarity=0.287  Sum_probs=61.8

Q ss_pred             EEEEEcCChhHHHHHHHHHhCC---CEEEEE-eCCchhhhhh-hcCCceee--CHHHHhcCCcEEEEcCCCcccCCHHHH
Q psy4626          79 QVVLCGYGEVGKGCCQSLKGLG---CVIYIT-EIDPICALQA-CMDGFSVV--KLNEVIRTVDIVVTATGNKNVVTREHM  151 (542)
Q Consensus        79 tVvViG~G~IG~~vA~~l~~~G---a~Viv~-d~dp~r~~~A-~~~G~~v~--~l~e~l~~aDvVi~atG~~~lI~~e~l  151 (542)
                      +++|+|+|.+|..+++.+...|   .+|+++ +++|.+..+. ...+..+.  +..++++.+|+||.|.-.. .+. +.+
T Consensus         1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~advvilav~p~-~~~-~v~   78 (96)
T PF03807_consen    1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYGVQATADDNEEAAQEADVVILAVKPQ-QLP-EVL   78 (96)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCTTEEESEEHHHHHHHTSEEEE-S-GG-GHH-HHH
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhccccccCChHHhhccCCEEEEEECHH-HHH-HHH
Confidence            6899999999999999999999   899954 9999887653 45565543  5788899999999997432 222 333


Q ss_pred             ---hccCCCeEEEecc
Q psy4626         152 ---DKMKNGCVVCNMG  164 (542)
Q Consensus       152 ---~~mk~GailvnvG  164 (542)
                         ....++..++++.
T Consensus        79 ~~i~~~~~~~~vis~~   94 (96)
T PF03807_consen   79 SEIPHLLKGKLVISIA   94 (96)
T ss_dssp             HHHHHHHTTSEEEEES
T ss_pred             HHHhhccCCCEEEEeC
Confidence               3456777887764

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=97.62  E-value=0.00015  Score=74.61  Aligned_cols=89  Identities=20%  Similarity=0.325  Sum_probs=62.2

Q ss_pred             cEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhh-----------hcCC-------------ceeeCHHHHhcCC
Q psy4626          78 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQA-----------CMDG-------------FSVVKLNEVIRTV  133 (542)
Q Consensus        78 ktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A-----------~~~G-------------~~v~~l~e~l~~a  133 (542)
                      ++|+|+|.|.+|..+|+.+...|.+|+++|+++.+...+           ...|             ..+.+..+.+++|
T Consensus         5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~a   84 (295)
T PLN02545          5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNLEELRDA   84 (295)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCHHHhCCC
Confidence            589999999999999999999999999999998765321           1112             1122233567999


Q ss_pred             cEEEEcCCC-ccc---CCHHHHhccCCCeEEE-eccCC
Q psy4626         134 DIVVTATGN-KNV---VTREHMDKMKNGCVVC-NMGHS  166 (542)
Q Consensus       134 DvVi~atG~-~~l---I~~e~l~~mk~Gailv-nvG~g  166 (542)
                      |+||+|.-. +.+   +-.+..+.++++++++ |++..
T Consensus        85 D~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i  122 (295)
T PLN02545         85 DFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSI  122 (295)
T ss_pred             CEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCCCC
Confidence            999998642 221   1123344678998886 66654

>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed

Probab=97.60  E-value=0.00028  Score=72.37  Aligned_cols=104  Identities=20%  Similarity=0.293  Sum_probs=68.0

Q ss_pred             HHHHHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCC-CEEEEEeCCchhhhhhhc-CC----cee-eCHHHHhcCC
Q psy4626          61 ESIIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLG-CVIYITEIDPICALQACM-DG----FSV-VKLNEVIRTV  133 (542)
Q Consensus        61 ~s~~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~G-a~Viv~d~dp~r~~~A~~-~G----~~v-~~l~e~l~~a  133 (542)
                      .+.+.++.+..+..+.+++|+|+|+|.+|+.++..|+..| .+|+++++++.++..... .+    ..+ .+..+.+..+
T Consensus       107 ~G~~~~l~~~~~~~~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~  186 (278)
T PRK00258        107 IGFVRALEERLGVDLKGKRILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFGALGKAELDLELQEELADF  186 (278)
T ss_pred             HHHHHHHHhccCCCCCCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhccceeecccchhccccC
Confidence            4455555542334578999999999999999999999999 699999999877543221 11    111 1234566889


Q ss_pred             cEEEEcCCCcccC-----CHHHHhccCCCeEEEeccC
Q psy4626         134 DIVVTATGNKNVV-----TREHMDKMKNGCVVCNMGH  165 (542)
Q Consensus       134 DvVi~atG~~~lI-----~~e~l~~mk~GailvnvG~  165 (542)
                      |+||+||... +-     ..-.++.++++..++.+-.
T Consensus       187 DivInaTp~g-~~~~~~~~~~~~~~l~~~~~v~DivY  222 (278)
T PRK00258        187 DLIINATSAG-MSGELPLPPLPLSLLRPGTIVYDMIY  222 (278)
T ss_pred             CEEEECCcCC-CCCCCCCCCCCHHHcCCCCEEEEeec
Confidence            9999987421 11     0112344566666665543

>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH)

Probab=97.57  E-value=0.00038  Score=72.94  Aligned_cols=103  Identities=21%  Similarity=0.333  Sum_probs=77.3

Q ss_pred             HHHHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCCC-EEEEEeCCchhhhhhhcCCce-eeCH-----H-------
Q psy4626          62 SIIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMDGFS-VVKL-----N-------  127 (542)
Q Consensus        62 s~~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga-~Viv~d~dp~r~~~A~~~G~~-v~~l-----~-------  127 (542)
                      ..++++.+.. ....|++|+|.|.|.+|+.+++.++.+|+ +|++++.++.+...+...|.. +++.     .       
T Consensus       164 ta~~al~~~~-~~~~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~  242 (361)
T cd08231         164 TVLAALDRAG-PVGAGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSPERLELAREFGADATIDIDELPDPQRRAIVR  242 (361)
T ss_pred             HHHHHHHhcc-CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCCeEEcCcccccHHHHHHHH
Confidence            3455655442 23379999999999999999999999999 999999888877666666753 2221     1       


Q ss_pred             HHh--cCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCC
Q psy4626         128 EVI--RTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHS  166 (542)
Q Consensus       128 e~l--~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g  166 (542)
                      +..  .+.|++++++|....+. +.++.+++++.++.+|..
T Consensus       243 ~~~~~~~~d~vid~~g~~~~~~-~~~~~l~~~G~~v~~g~~  282 (361)
T cd08231         243 DITGGRGADVVIEASGHPAAVP-EGLELLRRGGTYVLVGSV  282 (361)
T ss_pred             HHhCCCCCcEEEECCCChHHHH-HHHHHhccCCEEEEEcCC
Confidence            111  36899999998655553 688999999999998854

This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino

>PRK08618 ornithine cyclodeaminase; Validated

Probab=97.57  E-value=0.0004  Score=72.85  Aligned_cols=98  Identities=22%  Similarity=0.225  Sum_probs=73.3

Q ss_pred             cCcEEEEEcCChhHHHHHHHHH-hCCC-EEEEEeCCchhhhhhh-----cCCce---eeCHHHHhcCCcEEEEcCCCccc
Q psy4626          76 GGKQVVLCGYGEVGKGCCQSLK-GLGC-VIYITEIDPICALQAC-----MDGFS---VVKLNEVIRTVDIVVTATGNKNV  145 (542)
Q Consensus        76 ~GktVvViG~G~IG~~vA~~l~-~~Ga-~Viv~d~dp~r~~~A~-----~~G~~---v~~l~e~l~~aDvVi~atG~~~l  145 (542)
                      ..++++|+|+|.+|+..+..+. ..+. +|.++++++.+.....     ..+..   +.+.++++.++|+||+||.+.+-
T Consensus       126 ~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~aDiVi~aT~s~~p  205 (325)
T PRK08618        126 DAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKFNTEIYVVNSADEAIEEADIIVTVTNAKTP  205 (325)
T ss_pred             CCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEccCCCCc
Confidence            4789999999999998887664 5676 8999999998765322     12433   34567888999999999876554


Q ss_pred             CCHHHHhccCCCeEEEeccCCC---cccChHhhc
Q psy4626         146 VTREHMDKMKNGCVVCNMGHSN---TEIDVNSLR  176 (542)
Q Consensus       146 I~~e~l~~mk~GailvnvG~g~---~eid~~aL~  176 (542)
                      +=  . +.+|+|+.++.+|...   .|++...+.
T Consensus       206 ~i--~-~~l~~G~hV~~iGs~~p~~~E~~~~~~~  236 (325)
T PRK08618        206 VF--S-EKLKKGVHINAVGSFMPDMQELPSEAIA  236 (325)
T ss_pred             ch--H-HhcCCCcEEEecCCCCcccccCCHHHHh
Confidence            42  3 7789999999999863   577765444

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=97.56  E-value=0.00074  Score=69.09  Aligned_cols=87  Identities=15%  Similarity=0.258  Sum_probs=60.2

Q ss_pred             cEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhh-----------hhcCC-------------ceeeCHHHHhcCC
Q psy4626          78 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQ-----------ACMDG-------------FSVVKLNEVIRTV  133 (542)
Q Consensus        78 ktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~-----------A~~~G-------------~~v~~l~e~l~~a  133 (542)
                      ++|+|+|.|.+|..+|..+...|.+|+++|+++.+...           ....|             ..+.+..+.+++|
T Consensus         4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~a   83 (282)
T PRK05808          4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLDDLKDA   83 (282)
T ss_pred             cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHHhccC
Confidence            47999999999999999999999999999999987632           12233             1212222347899


Q ss_pred             cEEEEcCCCc-----ccCCHHHHhccCCCeEEE-eccC
Q psy4626         134 DIVVTATGNK-----NVVTREHMDKMKNGCVVC-NMGH  165 (542)
Q Consensus       134 DvVi~atG~~-----~lI~~e~l~~mk~Gailv-nvG~  165 (542)
                      |+||+|.-..     .++ .+..+.++++++++ |++.
T Consensus        84 DlVi~av~e~~~~k~~~~-~~l~~~~~~~~il~s~ts~  120 (282)
T PRK05808         84 DLVIEAATENMDLKKKIF-AQLDEIAKPEAILATNTSS  120 (282)
T ss_pred             CeeeecccccHHHHHHHH-HHHHhhCCCCcEEEECCCC
Confidence            9999986321     222 23334578888885 4443

>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]

Probab=97.56  E-value=0.00068  Score=71.20  Aligned_cols=119  Identities=18%  Similarity=0.219  Sum_probs=82.8

Q ss_pred             CchhhhHHHHhHHHHHHHHHHHHHhhcCccccCcEEEEEc-CChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce-
Q psy4626          45 NDSVTKTKFDNLYMCRESIIDSLKRSTDVMFGGKQVVLCG-YGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-  122 (542)
Q Consensus        45 n~s~~K~~fd~~~g~~~s~~~ai~r~~~~~l~GktVvViG-~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~-  122 (542)
                      .+++.-.-....+-.+-..|.++.+.. ..-.|++|+|.| .|-+|....|.++++|++++++-.++.+...+...|++ 
T Consensus       112 P~~ls~~eAAal~~~~~TA~~~l~~~~-~l~~g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s~~k~~~~~~lGAd~  190 (326)
T COG0604         112 PDGLSFEEAAALPLAGLTAWLALFDRA-GLKPGETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKLELLKELGADH  190 (326)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHhc-CCCCCCEEEEecCCchHHHHHHHHHHHcCCcEEEEecCHHHHHHHHhcCCCE
Confidence            344433333333333455566665532 234599999999 79999999999999998777776667666677888875 


Q ss_pred             eeC-----HHHHh------cCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCC
Q psy4626         123 VVK-----LNEVI------RTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHS  166 (542)
Q Consensus       123 v~~-----l~e~l------~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g  166 (542)
                      +++     +.+.+      ++.|+|+++.|... + .+.+..|++++.++.+|..
T Consensus       191 vi~y~~~~~~~~v~~~t~g~gvDvv~D~vG~~~-~-~~~l~~l~~~G~lv~ig~~  243 (326)
T COG0604         191 VINYREEDFVEQVRELTGGKGVDVVLDTVGGDT-F-AASLAALAPGGRLVSIGAL  243 (326)
T ss_pred             EEcCCcccHHHHHHHHcCCCCceEEEECCCHHH-H-HHHHHHhccCCEEEEEecC
Confidence            444     33322      36999999998643 3 3589999999999998864

>cd08293 PTGR2 Prostaglandin reductase

Probab=97.56  E-value=0.00052  Score=71.17  Aligned_cols=87  Identities=18%  Similarity=0.221  Sum_probs=68.2

Q ss_pred             CcEEEEEcC-ChhHHHHHHHHHhCCC-EEEEEeCCchhhhhhhc-CCce-ee-----CHHHHh-----cCCcEEEEcCCC
Q psy4626          77 GKQVVLCGY-GEVGKGCCQSLKGLGC-VIYITEIDPICALQACM-DGFS-VV-----KLNEVI-----RTVDIVVTATGN  142 (542)
Q Consensus        77 GktVvViG~-G~IG~~vA~~l~~~Ga-~Viv~d~dp~r~~~A~~-~G~~-v~-----~l~e~l-----~~aDvVi~atG~  142 (542)
                      |++|+|.|. |.+|..+++.++.+|+ +|++++.++.+...+.. .|++ ++     ++.+.+     .+.|++++++|.
T Consensus       155 ~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~lGa~~vi~~~~~~~~~~i~~~~~~gvd~vid~~g~  234 (345)
T cd08293         155 NQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSELGFDAAINYKTDNVAERLRELCPEGVDVYFDNVGG  234 (345)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhcCCcEEEECCCCCHHHHHHHHCCCCceEEEECCCc
Confidence            489999998 9999999999999999 89999888877665544 6654 22     122222     468999999987


Q ss_pred             cccCCHHHHhccCCCeEEEeccC
Q psy4626         143 KNVVTREHMDKMKNGCVVCNMGH  165 (542)
Q Consensus       143 ~~lI~~e~l~~mk~GailvnvG~  165 (542)
                      .. + .+.++.+++++.++.+|.
T Consensus       235 ~~-~-~~~~~~l~~~G~iv~~G~  255 (345)
T cd08293         235 EI-S-DTVISQMNENSHIILCGQ  255 (345)
T ss_pred             HH-H-HHHHHHhccCCEEEEEee
Confidence            54 4 478999999999999884

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid

>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD)

Probab=97.55  E-value=0.001  Score=69.15  Aligned_cols=103  Identities=18%  Similarity=0.278  Sum_probs=77.2

Q ss_pred             HHHHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce-eeCHH------HHhcCCc
Q psy4626          62 SIIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVKLN------EVIRTVD  134 (542)
Q Consensus        62 s~~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~-v~~l~------e~l~~aD  134 (542)
                      +.+.++.+. + ...|.+++|.|.|.+|+.+++.++.+|++|++++.++.+...+...|++ +.+..      ..-.+.|
T Consensus       157 ta~~~~~~~-~-~~~g~~vlV~g~g~vG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~~~d  234 (337)
T cd05283         157 TVYSPLKRN-G-VGPGKRVGVVGIGGLGHLAVKFAKALGAEVTAFSRSPSKKEDALKLGADEFIATKDPEAMKKAAGSLD  234 (337)
T ss_pred             HHHHHHHhc-C-CCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHcCCcEEecCcchhhhhhccCCce
Confidence            335555443 2 4578999999999999999999999999999999888777666666654 22211      1125789


Q ss_pred             EEEEcCCCcccCCHHHHhccCCCeEEEeccCCC
Q psy4626         135 IVVTATGNKNVVTREHMDKMKNGCVVCNMGHSN  167 (542)
Q Consensus       135 vVi~atG~~~lI~~e~l~~mk~GailvnvG~g~  167 (542)
                      ++++++|....+ .+.++.+++++.++.+|..+
T Consensus       235 ~v~~~~g~~~~~-~~~~~~l~~~G~~v~~g~~~  266 (337)
T cd05283         235 LIIDTVSASHDL-DPYLSLLKPGGTLVLVGAPE  266 (337)
T ss_pred             EEEECCCCcchH-HHHHHHhcCCCEEEEEeccC
Confidence            999999876434 47899999999999998653

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic

>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=97.54  E-value=0.00054  Score=70.20  Aligned_cols=91  Identities=19%  Similarity=0.122  Sum_probs=71.5

Q ss_pred             cccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCcee-eCHHHHh--cCCcEEEEcCCCcccCCHHH
Q psy4626          74 MFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV-VKLNEVI--RTVDIVVTATGNKNVVTREH  150 (542)
Q Consensus        74 ~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v-~~l~e~l--~~aDvVi~atG~~~lI~~e~  150 (542)
                      ...|.+|+|.|.|.+|..+++.++.+|++|++++.++.+...+...|+.. .+..+..  ...|++++++|....+. ..
T Consensus       153 ~~~g~~vlV~g~g~vg~~~~q~a~~~G~~vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~vid~~g~~~~~~-~~  231 (319)
T cd08242         153 ITPGDKVAVLGDGKLGLLIAQVLALTGPDVVLVGRHSEKLALARRLGVETVLPDEAESEGGGFDVVVEATGSPSGLE-LA  231 (319)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHcCCcEEeCccccccCCCCCEEEECCCChHHHH-HH
Confidence            45789999999999999999999999999999998888877776677653 2222222  46899999998754553 67


Q ss_pred             HhccCCCeEEEeccC
Q psy4626         151 MDKMKNGCVVCNMGH  165 (542)
Q Consensus       151 l~~mk~GailvnvG~  165 (542)
                      ++.+++++.++..+.
T Consensus       232 ~~~l~~~g~~v~~~~  246 (319)
T cd08242         232 LRLVRPRGTVVLKST  246 (319)
T ss_pred             HHHhhcCCEEEEEcc
Confidence            888999998887664

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=97.54  E-value=0.00015  Score=69.71  Aligned_cols=85  Identities=19%  Similarity=0.298  Sum_probs=53.5

Q ss_pred             EEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhh-----------cCCc-------------e-eeCHHHHhcCC
Q psy4626          79 QVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQAC-----------MDGF-------------S-VVKLNEVIRTV  133 (542)
Q Consensus        79 tVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~-----------~~G~-------------~-v~~l~e~l~~a  133 (542)
                      +|+|+|+|.+|+++|..+...|.+|+++|+++..+..+.           ..|.             . ..+++++. ++
T Consensus         1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~-~a   79 (180)
T PF02737_consen    1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAV-DA   79 (180)
T ss_dssp             EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGC-TE
T ss_pred             CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHh-hh
Confidence            689999999999999999999999999999997543321           1111             0 12345555 99


Q ss_pred             cEEEEcCCC-----cccCCHHHHhccCCCeEEEeccC
Q psy4626         134 DIVVTATGN-----KNVVTREHMDKMKNGCVVCNMGH  165 (542)
Q Consensus       134 DvVi~atG~-----~~lI~~e~l~~mk~GailvnvG~  165 (542)
                      |+||++.-.     ..++ ++.-+.+++.+++.+..+
T Consensus        80 dlViEai~E~l~~K~~~~-~~l~~~~~~~~ilasnTS  115 (180)
T PF02737_consen   80 DLVIEAIPEDLELKQELF-AELDEICPPDTILASNTS  115 (180)
T ss_dssp             SEEEE-S-SSHHHHHHHH-HHHHCCS-TTSEEEE--S
T ss_pred             heehhhccccHHHHHHHH-HHHHHHhCCCceEEecCC
Confidence            999998632     1222 223335589998884443

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.53  E-value=0.00034  Score=73.09  Aligned_cols=88  Identities=18%  Similarity=0.235  Sum_probs=68.3

Q ss_pred             CcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcC--------C------ce-eeCHHHHhcCCcEEEEcCC
Q psy4626          77 GKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMD--------G------FS-VVKLNEVIRTVDIVVTATG  141 (542)
Q Consensus        77 GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~--------G------~~-v~~l~e~l~~aDvVi~atG  141 (542)
                      ..+|+|+|+|.+|..+|..|...|.+|++|++++.+.......        |      +. ..+++++++.+|+|+.++.
T Consensus         4 ~m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~aD~Vi~~v~   83 (328)
T PRK14618          4 GMRVAVLGAGAWGTALAVLAASKGVPVRLWARRPEFAAALAAERENREYLPGVALPAELYPTADPEEALAGADFAVVAVP   83 (328)
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHcCCCEEEEECc
Confidence            3479999999999999999999999999999987654322221        3      22 2356777889999999986


Q ss_pred             CcccCCHHHHhccCCCeEEEeccCC
Q psy4626         142 NKNVVTREHMDKMKNGCVVCNMGHS  166 (542)
Q Consensus       142 ~~~lI~~e~l~~mk~GailvnvG~g  166 (542)
                      +..+  .+.++.++++..++++..|
T Consensus        84 ~~~~--~~v~~~l~~~~~vi~~~~G  106 (328)
T PRK14618         84 SKAL--RETLAGLPRALGYVSCAKG  106 (328)
T ss_pred             hHHH--HHHHHhcCcCCEEEEEeec
Confidence            6543  5678889999998887765

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=97.53  E-value=0.0003  Score=72.28  Aligned_cols=88  Identities=19%  Similarity=0.294  Sum_probs=62.2

Q ss_pred             cEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhc-----------CC-------------ce-eeCHHHHhcC
Q psy4626          78 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACM-----------DG-------------FS-VVKLNEVIRT  132 (542)
Q Consensus        78 ktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~-----------~G-------------~~-v~~l~e~l~~  132 (542)
                      ++|+|+|.|.+|..+|..+...|.+|+++|+++.+...+..           .|             .. ..++ +.+.+
T Consensus         5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~   83 (292)
T PRK07530          5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDL-EDLAD   83 (292)
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCH-HHhcC
Confidence            57999999999999999999999999999999876543221           12             11 1233 45789


Q ss_pred             CcEEEEcCCCcccCC----HHHHhccCCCeEEE-eccCC
Q psy4626         133 VDIVVTATGNKNVVT----REHMDKMKNGCVVC-NMGHS  166 (542)
Q Consensus       133 aDvVi~atG~~~lI~----~e~l~~mk~Gailv-nvG~g  166 (542)
                      +|+||+|.....-+.    .+....++++++++ |++..
T Consensus        84 aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~  122 (292)
T PRK07530         84 CDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSI  122 (292)
T ss_pred             CCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCC
Confidence            999999975421111    23445678899887 65543

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=97.53  E-value=0.00029  Score=72.60  Aligned_cols=88  Identities=20%  Similarity=0.263  Sum_probs=61.7

Q ss_pred             cEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhh-----------hhcCCce--------------eeCHHHHhcC
Q psy4626          78 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQ-----------ACMDGFS--------------VVKLNEVIRT  132 (542)
Q Consensus        78 ktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~-----------A~~~G~~--------------v~~l~e~l~~  132 (542)
                      ++|+|+|+|.+|.++|..+...|.+|+++|++|.....           ....|.-              ..++ +.+++
T Consensus         6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~-~~~~~   84 (286)
T PRK07819          6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDL-GDFAD   84 (286)
T ss_pred             cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCH-HHhCC
Confidence            48999999999999999999999999999999987544           2222311              2234 45789


Q ss_pred             CcEEEEcCCCcccCCH---HHHhcc--CCCeEEEeccCC
Q psy4626         133 VDIVVTATGNKNVVTR---EHMDKM--KNGCVVCNMGHS  166 (542)
Q Consensus       133 aDvVi~atG~~~lI~~---e~l~~m--k~GailvnvG~g  166 (542)
                      +|+||+|.-..--+..   ..++.+  ++++++++..+.
T Consensus        85 ~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snTS~  123 (286)
T PRK07819         85 RQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSS  123 (286)
T ss_pred             CCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECCCC
Confidence            9999998642211211   134555  789998855443

>PRK08507 prephenate dehydrogenase; Validated

Probab=97.52  E-value=0.00028  Score=72.02  Aligned_cols=87  Identities=18%  Similarity=0.341  Sum_probs=64.7

Q ss_pred             EEEEEcCChhHHHHHHHHHhCCC--EEEEEeCCchhhhhhhcCCce--eeCHHHHhcCCcEEEEcCCCcccCC--HHHHh
Q psy4626          79 QVVLCGYGEVGKGCCQSLKGLGC--VIYITEIDPICALQACMDGFS--VVKLNEVIRTVDIVVTATGNKNVVT--REHMD  152 (542)
Q Consensus        79 tVvViG~G~IG~~vA~~l~~~Ga--~Viv~d~dp~r~~~A~~~G~~--v~~l~e~l~~aDvVi~atG~~~lI~--~e~l~  152 (542)
                      +++|+|+|.+|..+|..++..|.  +|+++|+++.+...+...|..  ..+.+++. .+|+||.|+....+..  .+...
T Consensus         2 ~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~g~~~~~~~~~~~~-~aD~Vilavp~~~~~~~~~~l~~   80 (275)
T PRK08507          2 KIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALELGLVDEIVSFEELK-KCDVIFLAIPVDAIIEILPKLLD   80 (275)
T ss_pred             EEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHCCCCcccCCHHHHh-cCCEEEEeCcHHHHHHHHHHHhc
Confidence            69999999999999999998885  899999998877666666652  33555654 4999999986433321  23334


Q ss_pred             ccCCCeEEEeccCCC
Q psy4626         153 KMKNGCVVCNMGHSN  167 (542)
Q Consensus       153 ~mk~GailvnvG~g~  167 (542)
                       ++++++++.+|.-.
T Consensus        81 -l~~~~iv~d~gs~k   94 (275)
T PRK08507         81 -IKENTTIIDLGSTK   94 (275)
T ss_pred             -cCCCCEEEECccch
Confidence             77899999987643

>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases

Probab=97.50  E-value=0.00051  Score=71.64  Aligned_cols=101  Identities=20%  Similarity=0.250  Sum_probs=76.8

Q ss_pred             HHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCCC-EEEEEeCCchhhhhhhcCCce-eeCH------H---HHh--
Q psy4626          64 IDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMDGFS-VVKL------N---EVI--  130 (542)
Q Consensus        64 ~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga-~Viv~d~dp~r~~~A~~~G~~-v~~l------~---e~l--  130 (542)
                      ++++.++  ....|++|+|.|.|.+|+.+++.++.+|+ .|++++.++.+...+...|.+ +++.      +   +..  
T Consensus       156 ~~~~~~~--~~~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~i~~~~~~  233 (351)
T cd08285         156 FHGAELA--NIKLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKEYGATDIVDYKNGDVVEQILKLTGG  233 (351)
T ss_pred             HHHHHcc--CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCceEecCCCCCHHHHHHHHhCC
Confidence            4444333  34579999999999999999999999999 589999888887777777754 2221      1   122  


Q ss_pred             cCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCCC
Q psy4626         131 RTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSN  167 (542)
Q Consensus       131 ~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g~  167 (542)
                      .+.|++++++|....+. +.++.+++++.++.+|..+
T Consensus       234 ~~~d~vld~~g~~~~~~-~~~~~l~~~G~~v~~g~~~  269 (351)
T cd08285         234 KGVDAVIIAGGGQDTFE-QALKVLKPGGTISNVNYYG  269 (351)
T ss_pred             CCCcEEEECCCCHHHHH-HHHHHhhcCCEEEEecccC
Confidence            36899999998765664 7899999999999988654

This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members

Probab=97.49  E-value=0.00071  Score=67.80  Aligned_cols=102  Identities=20%  Similarity=0.205  Sum_probs=76.2

Q ss_pred             HHHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCCCE-EEEEeCCchhhhhhhcCC-ce-eeCHHH-H--hcCCcEE
Q psy4626          63 IIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCV-IYITEIDPICALQACMDG-FS-VVKLNE-V--IRTVDIV  136 (542)
Q Consensus        63 ~~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga~-Viv~d~dp~r~~~A~~~G-~~-v~~l~e-~--l~~aDvV  136 (542)
                      .++++.+.  ...+|.+++|.|.|.+|..+++.++.+|++ |++++.++.+...+...| .+ +....+ .  -.+.|++
T Consensus        86 a~~~~~~~--~~~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~d~v  163 (277)
T cd08255          86 ALNGVRDA--EPRLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEALGPADPVAADTADEIGGRGADVV  163 (277)
T ss_pred             HHHHHHhc--CCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHcCCCccccccchhhhcCCCCCEE
Confidence            34444432  345799999999999999999999999998 999998888777666666 22 222221 1  1468999


Q ss_pred             EEcCCCcccCCHHHHhccCCCeEEEeccCCC
Q psy4626         137 VTATGNKNVVTREHMDKMKNGCVVCNMGHSN  167 (542)
Q Consensus       137 i~atG~~~lI~~e~l~~mk~GailvnvG~g~  167 (542)
                      ++++|....+ .+.++.+++++.++++|..+
T Consensus       164 l~~~~~~~~~-~~~~~~l~~~g~~~~~g~~~  193 (277)
T cd08255         164 IEASGSPSAL-ETALRLLRDRGRVVLVGWYG  193 (277)
T ss_pred             EEccCChHHH-HHHHHHhcCCcEEEEEeccC
Confidence            9998765555 46889999999999988653

This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD

>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase

Probab=97.49  E-value=0.00023  Score=73.11  Aligned_cols=86  Identities=17%  Similarity=0.234  Sum_probs=68.0

Q ss_pred             EEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCcee-eCHHHHhcCCcEEEEcCCCcccCC------HHHHhcc
Q psy4626          82 LCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV-VKLNEVIRTVDIVVTATGNKNVVT------REHMDKM  154 (542)
Q Consensus        82 ViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v-~~l~e~l~~aDvVi~atG~~~lI~------~e~l~~m  154 (542)
                      |||.|.+|..+|+.|...|.+|++||+++.+.......|... .++.++++++|+||.|..+...+.      ...+..+
T Consensus         1 ~IGlG~mG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~~~~~~advVil~vp~~~~~~~v~~g~~~l~~~~   80 (288)
T TIGR01692         1 FIGLGNMGGPMAANLLKAGHPVRVFDLFPDAVEEAVAAGAQAAASPAEAAEGADRVITMLPAGQHVISVYSGDEGILPKV   80 (288)
T ss_pred             CCcccHhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCcchHhhcC
Confidence            589999999999999999999999999998876666667654 467788999999999876533221      1334577


Q ss_pred             CCCeEEEeccCCC
Q psy4626         155 KNGCVVCNMGHSN  167 (542)
Q Consensus       155 k~GailvnvG~g~  167 (542)
                      ++|.++++++..+
T Consensus        81 ~~g~~vid~st~~   93 (288)
T TIGR01692        81 AKGSLLIDCSTID   93 (288)
T ss_pred             CCCCEEEECCCCC
Confidence            8999999988554

This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).

>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase

Probab=97.48  E-value=0.00045  Score=74.27  Aligned_cols=110  Identities=13%  Similarity=0.113  Sum_probs=75.8

Q ss_pred             cccCcEEEEEc-CChhHHHHHHHHHhCCC---EEEEEeCCchhhhhhhcC--------Cce--eeC------HHHH----
Q psy4626          74 MFGGKQVVLCG-YGEVGKGCCQSLKGLGC---VIYITEIDPICALQACMD--------GFS--VVK------LNEV----  129 (542)
Q Consensus        74 ~l~GktVvViG-~G~IG~~vA~~l~~~Ga---~Viv~d~dp~r~~~A~~~--------G~~--v~~------l~e~----  129 (542)
                      ...|++|+|+| .|++|..+++.++.+|+   +|+++|.++.|...+...        |..  +++      ..+.    
T Consensus       173 ~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~~~Ga~~~~i~~~~~~~~~~~v~~~  252 (410)
T cd08238         173 IKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAASRGIELLYVNPATIDDLHATLMEL  252 (410)
T ss_pred             CCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhccccccccCceEEEECCCccccHHHHHHHH
Confidence            35789999998 69999999999999864   899999999888777664        543  232      1121    


Q ss_pred             h--cCCcEEEEcCCCcccCCHHHHhccCCCeEEEec-cCC----CcccChHhhcCCCcceee
Q psy4626         130 I--RTVDIVVTATGNKNVVTREHMDKMKNGCVVCNM-GHS----NTEIDVNSLRTPDLTWEK  184 (542)
Q Consensus       130 l--~~aDvVi~atG~~~lI~~e~l~~mk~Gailvnv-G~g----~~eid~~aL~~~~l~v~~  184 (542)
                      .  .++|++|+++|....+. +.++.+++++.++.+ |..    ...+++..+..+++++.+
T Consensus       253 t~g~g~D~vid~~g~~~~~~-~a~~~l~~~G~~v~~~g~~~~~~~~~~~~~~~~~~~~~i~g  313 (410)
T cd08238         253 TGGQGFDDVFVFVPVPELVE-EADTLLAPDGCLNFFAGPVDKNFSAPLNFYNVHYNNTHYVG  313 (410)
T ss_pred             hCCCCCCEEEEcCCCHHHHH-HHHHHhccCCeEEEEEccCCCCccccccHHHhhhcCcEEEE
Confidence            2  36899999998776774 688999876655544 322    134555555444555444

L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found

>PRK14982 acyl-ACP reductase; Provisional

Probab=97.47  E-value=0.00047  Score=72.83  Aligned_cols=91  Identities=21%  Similarity=0.367  Sum_probs=70.3

Q ss_pred             ccccCcEEEEEcC-ChhHHHHHHHHHh-CCC-EEEEEeCCchhhhh-hhcCC-ceeeCHHHHhcCCcEEEEcCCCc-cc-
Q psy4626          73 VMFGGKQVVLCGY-GEVGKGCCQSLKG-LGC-VIYITEIDPICALQ-ACMDG-FSVVKLNEVIRTVDIVVTATGNK-NV-  145 (542)
Q Consensus        73 ~~l~GktVvViG~-G~IG~~vA~~l~~-~Ga-~Viv~d~dp~r~~~-A~~~G-~~v~~l~e~l~~aDvVi~atG~~-~l-  145 (542)
                      ..+.|++|+|+|+ |.||+.+++.|.. .|+ +++++++++.++.. +.+.+ .++.++++++.++|+|+.+++.+ .. 
T Consensus       151 ~~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~el~~~~i~~l~~~l~~aDiVv~~ts~~~~~~  230 (340)
T PRK14982        151 IDLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQAELGGGKILSLEEALPEADIVVWVASMPKGVE  230 (340)
T ss_pred             cCcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHHHhccccHHhHHHHHccCCEEEECCcCCcCCc
Confidence            4688999999999 8999999999974 575 89999988776643 22222 23456778889999999998863 43 


Q ss_pred             CCHHHHhccCCCeEEEeccCC
Q psy4626         146 VTREHMDKMKNGCVVCNMGHS  166 (542)
Q Consensus       146 I~~e~l~~mk~GailvnvG~g  166 (542)
                      ++++.   ++++.+++.+|+.
T Consensus       231 I~~~~---l~~~~~viDiAvP  248 (340)
T PRK14982        231 IDPET---LKKPCLMIDGGYP  248 (340)
T ss_pred             CCHHH---hCCCeEEEEecCC
Confidence            66554   5899999999975

>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase

Probab=97.47  E-value=0.00059  Score=70.89  Aligned_cols=103  Identities=17%  Similarity=0.146  Sum_probs=76.8

Q ss_pred             HHHHHHHHhhcCccccCcEEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhc-CCce-eeC------HHHHh-
Q psy4626          61 ESIIDSLKRSTDVMFGGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACM-DGFS-VVK------LNEVI-  130 (542)
Q Consensus        61 ~s~~~ai~r~~~~~l~GktVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~-~G~~-v~~------l~e~l-  130 (542)
                      ...|+++.+.. ....|++|+|.|. |.+|..+++.++.+|++|+++..++.+...+.. .|.+ +++      ..+.+ 
T Consensus       137 ~tA~~~l~~~~-~~~~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~i~  215 (338)
T cd08295         137 LTAYAGFYEVC-KPKKGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSDEKVDLLKNKLGFDDAFNYKEEPDLDAALK  215 (338)
T ss_pred             HHHHHHHHHhc-CCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCceeEEcCCcccHHHHHH
Confidence            34456654432 2457999999998 999999999999999999998888877766655 6653 222      22222 


Q ss_pred             ----cCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCC
Q psy4626         131 ----RTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHS  166 (542)
Q Consensus       131 ----~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g  166 (542)
                          .+.|+++++.|.. .+ .+.++.+++++.++..|..
T Consensus       216 ~~~~~gvd~v~d~~g~~-~~-~~~~~~l~~~G~iv~~G~~  253 (338)
T cd08295         216 RYFPNGIDIYFDNVGGK-ML-DAVLLNMNLHGRIAACGMI  253 (338)
T ss_pred             HhCCCCcEEEEECCCHH-HH-HHHHHHhccCcEEEEeccc
Confidence                3689999999863 44 4789999999999998853

This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=97.47  E-value=0.00046  Score=70.94  Aligned_cols=89  Identities=18%  Similarity=0.247  Sum_probs=61.1

Q ss_pred             cEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhc--------------CCc-------------eeeCHHHHh
Q psy4626          78 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACM--------------DGF-------------SVVKLNEVI  130 (542)
Q Consensus        78 ktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~--------------~G~-------------~v~~l~e~l  130 (542)
                      ++|+|+|+|.+|.++|..+...|.+|+++|+++.+...+..              .|.             ...+..+.+
T Consensus         4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~   83 (291)
T PRK06035          4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSYESL   83 (291)
T ss_pred             cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCCHHHh
Confidence            58999999999999999999999999999999876543211              111             111112467


Q ss_pred             cCCcEEEEcCCCcccCCHHH---H-hccCCCeEEEeccCC
Q psy4626         131 RTVDIVVTATGNKNVVTREH---M-DKMKNGCVVCNMGHS  166 (542)
Q Consensus       131 ~~aDvVi~atG~~~lI~~e~---l-~~mk~GailvnvG~g  166 (542)
                      +++|+||+|.....-+..+.   + +.+++++++++...+
T Consensus        84 ~~aDlVieav~e~~~~k~~~~~~l~~~~~~~~il~S~tsg  123 (291)
T PRK06035         84 SDADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTSG  123 (291)
T ss_pred             CCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEEcCCC
Confidence            89999999975432122222   2 346788888865554

>cd05284 arabinose_DH_like D-arabinose dehydrogenase

Probab=97.47  E-value=0.0013  Score=67.96  Aligned_cols=104  Identities=19%  Similarity=0.243  Sum_probs=75.8

Q ss_pred             HHHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCC-CEEEEEeCCchhhhhhhcCCce-eeC----H----HHHh--
Q psy4626          63 IIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLG-CVIYITEIDPICALQACMDGFS-VVK----L----NEVI--  130 (542)
Q Consensus        63 ~~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~G-a~Viv~d~dp~r~~~A~~~G~~-v~~----l----~e~l--  130 (542)
                      .|+++.+.......|++|+|.|.|.+|..+++.++.+| ++|++++.++.+.......|.. +.+    .    .+..  
T Consensus       154 a~~~l~~~~~~~~~~~~vlI~g~~~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~  233 (340)
T cd05284         154 AYHAVKKALPYLDPGSTVVVIGVGGLGHIAVQILRALTPATVIAVDRSEEALKLAERLGADHVLNASDDVVEEVRELTGG  233 (340)
T ss_pred             HHHHHHHhcccCCCCCEEEEEcCcHHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHhCCcEEEcCCccHHHHHHHHhCC
Confidence            34555443222456999999999999999999999999 7999998888776655555643 222    1    1222  


Q ss_pred             cCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCCC
Q psy4626         131 RTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSN  167 (542)
Q Consensus       131 ~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g~  167 (542)
                      .+.|++++++|....+ .+.++.+++++.++..|..+
T Consensus       234 ~~~dvvld~~g~~~~~-~~~~~~l~~~g~~i~~g~~~  269 (340)
T cd05284         234 RGADAVIDFVGSDETL-ALAAKLLAKGGRYVIVGYGG  269 (340)
T ss_pred             CCCCEEEEcCCCHHHH-HHHHHHhhcCCEEEEEcCCC
Confidence            3589999999865555 47899999999999988654

This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d

>PRK06545 prephenate dehydrogenase; Validated

Probab=97.44  E-value=0.0003  Score=74.72  Aligned_cols=89  Identities=26%  Similarity=0.443  Sum_probs=64.6

Q ss_pred             cEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce-----eeCHHHHhcCCcEEEEcCCCcc---cCCHH
Q psy4626          78 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-----VVKLNEVIRTVDIVVTATGNKN---VVTRE  149 (542)
Q Consensus        78 ktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~-----v~~l~e~l~~aDvVi~atG~~~---lI~~e  149 (542)
                      ++|+|+|+|.||..+|..++..|.+|.++++++.....+...+..     ..+++++++++|+||.|+....   ++ .+
T Consensus         1 ~~I~iIG~GliG~siA~~L~~~G~~v~i~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~aDlVilavP~~~~~~vl-~~   79 (359)
T PRK06545          1 RTVLIVGLGLIGGSLALAIKAAGPDVFIIGYDPSAAQLARALGFGVIDELAADLQRAAAEADLIVLAVPVDATAALL-AE   79 (359)
T ss_pred             CeEEEEEeCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHhcCCCCcccccCHHHHhcCCCEEEEeCCHHHHHHHH-HH
Confidence            479999999999999999999999999998887654433333322     1345677899999999975432   22 12


Q ss_pred             HHh-ccCCCeEEEeccCCC
Q psy4626         150 HMD-KMKNGCVVCNMGHSN  167 (542)
Q Consensus       150 ~l~-~mk~GailvnvG~g~  167 (542)
                      ... .++++++++++|.-.
T Consensus        80 l~~~~l~~~~ivtDv~SvK   98 (359)
T PRK06545         80 LADLELKPGVIVTDVGSVK   98 (359)
T ss_pred             HhhcCCCCCcEEEeCcccc
Confidence            223 377899999888754

>PRK13940 glutamyl-tRNA reductase; Provisional

Probab=97.44  E-value=0.00066  Score=73.62  Aligned_cols=91  Identities=19%  Similarity=0.211  Sum_probs=66.8

Q ss_pred             cccCcEEEEEcCChhHHHHHHHHHhCCC-EEEEEeCCchhhhh-hhcCC-ceeeCH---HHHhcCCcEEEEcCCCcc-cC
Q psy4626          74 MFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQ-ACMDG-FSVVKL---NEVIRTVDIVVTATGNKN-VV  146 (542)
Q Consensus        74 ~l~GktVvViG~G~IG~~vA~~l~~~Ga-~Viv~d~dp~r~~~-A~~~G-~~v~~l---~e~l~~aDvVi~atG~~~-lI  146 (542)
                      .+.|++|+|+|+|.+|+.++..|...|+ +++++.+++.++.. +...+ ..+.++   .+.+..+|+||.||+.++ +|
T Consensus       178 ~l~~kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~~~~~~~~~~l~~~l~~aDiVI~aT~a~~~vi  257 (414)
T PRK13940        178 NISSKNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFRNASAHYLSELPQLIKKADIIIAAVNVLEYIV  257 (414)
T ss_pred             CccCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhcCCeEecHHHHHHHhccCCEEEECcCCCCeeE
Confidence            4689999999999999999999999997 89999999877643 33333 344444   456789999999998664 45


Q ss_pred             CHHHHhccCCCeEEEeccCC
Q psy4626         147 TREHMDKMKNGCVVCNMGHS  166 (542)
Q Consensus       147 ~~e~l~~mk~GailvnvG~g  166 (542)
                      +.+.+.  .+.-+++..+..
T Consensus       258 ~~~~~~--~~~~~~iDLavP  275 (414)
T PRK13940        258 TCKYVG--DKPRVFIDISIP  275 (414)
T ss_pred             CHHHhC--CCCeEEEEeCCC
Confidence            655442  223466777754

>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating)

Probab=97.44  E-value=0.0005  Score=71.15  Aligned_cols=88  Identities=22%  Similarity=0.231  Sum_probs=67.4

Q ss_pred             EEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce-eeCHHHH---hcCCcEEEEcCCCc---ccCCHHHH
Q psy4626          79 QVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVKLNEV---IRTVDIVVTATGNK---NVVTREHM  151 (542)
Q Consensus        79 tVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~-v~~l~e~---l~~aDvVi~atG~~---~lI~~e~l  151 (542)
                      +|+|||+|.+|..+|+.+...|.+|++||+++.+.......|.. ..+++++   +..+|+|+.+....   .++ .+..
T Consensus         2 ~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~~~~~dvIi~~vp~~~~~~v~-~~l~   80 (298)
T TIGR00872         2 QLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQDAVKAMKEDRTTGVANLRELSQRLSAPRVVWVMVPHGIVDAVL-EELA   80 (298)
T ss_pred             EEEEEcchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCcccCCHHHHHhhcCCCCEEEEEcCchHHHHHH-HHHH
Confidence            69999999999999999999999999999999887665555543 2344443   46789999986543   233 2455


Q ss_pred             hccCCCeEEEeccCCC
Q psy4626         152 DKMKNGCVVCNMGHSN  167 (542)
Q Consensus       152 ~~mk~GailvnvG~g~  167 (542)
                      ..+++|.++++++...
T Consensus        81 ~~l~~g~ivid~st~~   96 (298)
T TIGR00872        81 PTLEKGDIVIDGGNSY   96 (298)
T ss_pred             hhCCCCCEEEECCCCC
Confidence            6778999999988764

This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.

>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type

Probab=97.43  E-value=0.0006  Score=71.60  Aligned_cols=98  Identities=19%  Similarity=0.208  Sum_probs=71.6

Q ss_pred             cCcEEEEEcCChhHHHHHHHHHh-CC-CEEEEEeCCchhhhhh-h---cCCce---eeCHHHHhcCCcEEEEcCCC-ccc
Q psy4626          76 GGKQVVLCGYGEVGKGCCQSLKG-LG-CVIYITEIDPICALQA-C---MDGFS---VVKLNEVIRTVDIVVTATGN-KNV  145 (542)
Q Consensus        76 ~GktVvViG~G~IG~~vA~~l~~-~G-a~Viv~d~dp~r~~~A-~---~~G~~---v~~l~e~l~~aDvVi~atG~-~~l  145 (542)
                      .-++++|||+|.+|+..++.+.. +. -+|.++++++.++... .   ..|..   +.+.+++++++|+|++||.+ .++
T Consensus       127 ~~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~~g~~v~~~~~~~eav~~aDiVitaT~s~~P~  206 (325)
T TIGR02371       127 DSSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASDYEVPVRAATDPREAVEGCDILVTTTPSRKPV  206 (325)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhhCCcEEEeCCHHHHhccCCEEEEecCCCCcE
Confidence            35899999999999886666643 33 4899999999876432 1   23432   34678899999999998853 456


Q ss_pred             CCHHHHhccCCCeEEEeccCC---CcccChHhhc
Q psy4626         146 VTREHMDKMKNGCVVCNMGHS---NTEIDVNSLR  176 (542)
Q Consensus       146 I~~e~l~~mk~GailvnvG~g---~~eid~~aL~  176 (542)
                      +..   +.+|+|+.+..+|..   ..|+|...+.
T Consensus       207 ~~~---~~l~~g~~v~~vGs~~p~~~Eld~~~l~  237 (325)
T TIGR02371       207 VKA---DWVSEGTHINAIGADAPGKQELDPEILK  237 (325)
T ss_pred             ecH---HHcCCCCEEEecCCCCcccccCCHHHHh
Confidence            653   457999999999976   3678866554

This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.

>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity

Probab=97.43  E-value=0.00086  Score=68.73  Aligned_cols=102  Identities=22%  Similarity=0.161  Sum_probs=76.1

Q ss_pred             HHHHHHHHhhcCccccCcEEEEEc-CChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce-eeC-----HHHHh---
Q psy4626          61 ESIIDSLKRSTDVMFGGKQVVLCG-YGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVK-----LNEVI---  130 (542)
Q Consensus        61 ~s~~~ai~r~~~~~l~GktVvViG-~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~-v~~-----l~e~l---  130 (542)
                      ...|+++.+.. ...+|++|+|.| .|.+|..+++.++.+|++|+++..++.+...+...|++ +.+     ..+.+   
T Consensus       129 ~ta~~al~~~~-~~~~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~~~~~~l~~~Ga~~vi~~~~~~~~~~v~~~  207 (329)
T cd08294         129 LTAYFGLLEIC-KPKAGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSDDKVAWLKELGFDAVFNYKTVSLEEALKEA  207 (329)
T ss_pred             HHHHHHHHHhc-CCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCEEEeCCCccHHHHHHHH
Confidence            44456654332 235799999999 59999999999999999999998888777766667764 222     11211   


Q ss_pred             --cCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccC
Q psy4626         131 --RTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGH  165 (542)
Q Consensus       131 --~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~  165 (542)
                        .+.|+++++.|.. .+ .+.++.+++++.++.+|.
T Consensus       208 ~~~gvd~vld~~g~~-~~-~~~~~~l~~~G~iv~~g~  242 (329)
T cd08294         208 APDGIDCYFDNVGGE-FS-STVLSHMNDFGRVAVCGS  242 (329)
T ss_pred             CCCCcEEEEECCCHH-HH-HHHHHhhccCCEEEEEcc
Confidence              3689999999873 34 478999999999999884

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac

>PLN02688 pyrroline-5-carboxylate reductase

Probab=97.43  E-value=0.00048  Score=69.61  Aligned_cols=86  Identities=16%  Similarity=0.255  Sum_probs=65.2

Q ss_pred             EEEEEcCChhHHHHHHHHHhCCC----EEEEE-eCCchhhhhhhcCCceee-CHHHHhcCCcEEEEcCCCcccCCHHHH-
Q psy4626          79 QVVLCGYGEVGKGCCQSLKGLGC----VIYIT-EIDPICALQACMDGFSVV-KLNEVIRTVDIVVTATGNKNVVTREHM-  151 (542)
Q Consensus        79 tVvViG~G~IG~~vA~~l~~~Ga----~Viv~-d~dp~r~~~A~~~G~~v~-~l~e~l~~aDvVi~atG~~~lI~~e~l-  151 (542)
                      +|++||+|.+|..+++.+...|.    +|+++ ++++.+...+...|.... +..++++.+|+||.|.- +..+. +.+ 
T Consensus         2 kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~~~g~~~~~~~~e~~~~aDvVil~v~-~~~~~-~vl~   79 (266)
T PLN02688          2 RVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQSLGVKTAASNTEVVKSSDVIILAVK-PQVVK-DVLT   79 (266)
T ss_pred             eEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHHHcCCEEeCChHHHHhcCCEEEEEEC-cHHHH-HHHH
Confidence            69999999999999999998887    89999 988887766666777644 56677889999999983 33332 332 


Q ss_pred             ---hccCCCeEEEeccCC
Q psy4626         152 ---DKMKNGCVVCNMGHS  166 (542)
Q Consensus       152 ---~~mk~GailvnvG~g  166 (542)
                         ..++++.+++++..+
T Consensus        80 ~l~~~~~~~~~iIs~~~g   97 (266)
T PLN02688         80 ELRPLLSKDKLLVSVAAG   97 (266)
T ss_pred             HHHhhcCCCCEEEEecCC
Confidence               446778888866444

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=97.42  E-value=0.00045  Score=76.81  Aligned_cols=89  Identities=21%  Similarity=0.312  Sum_probs=63.6

Q ss_pred             cEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhh-----------hcCCc-------------e-eeCHHHHhcC
Q psy4626          78 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQA-----------CMDGF-------------S-VVKLNEVIRT  132 (542)
Q Consensus        78 ktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A-----------~~~G~-------------~-v~~l~e~l~~  132 (542)
                      ++|+|||.|.+|.++|+.+...|.+|+++|+++..+..+           ...|.             . ..+++ .+.+
T Consensus         8 ~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~-~~~~   86 (507)
T PRK08268          8 ATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPVEALA-DLAD   86 (507)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHH-HhCC
Confidence            689999999999999999999999999999999876543           33341             2 23343 3579


Q ss_pred             CcEEEEcCCCcccCCHH---HHh-ccCCCeEEE-eccCCC
Q psy4626         133 VDIVVTATGNKNVVTRE---HMD-KMKNGCVVC-NMGHSN  167 (542)
Q Consensus       133 aDvVi~atG~~~lI~~e---~l~-~mk~Gailv-nvG~g~  167 (542)
                      ||+||++.-...-+...   .++ .++++++++ |++.-+
T Consensus        87 aDlViEav~E~~~vK~~vf~~l~~~~~~~ailasntStl~  126 (507)
T PRK08268         87 CDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNTSSLS  126 (507)
T ss_pred             CCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCC
Confidence            99999986432222222   233 458899985 888654

>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase

Probab=97.42  E-value=0.0017  Score=68.46  Aligned_cols=92  Identities=24%  Similarity=0.290  Sum_probs=72.8

Q ss_pred             cccCcEEEEEcCChhHHHHHHHHHhCCC-EEEEEeCCchhhhhhhcCCce-eeC-----HHHHh-----cCCcEEEEcCC
Q psy4626          74 MFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMDGFS-VVK-----LNEVI-----RTVDIVVTATG  141 (542)
Q Consensus        74 ~l~GktVvViG~G~IG~~vA~~l~~~Ga-~Viv~d~dp~r~~~A~~~G~~-v~~-----l~e~l-----~~aDvVi~atG  141 (542)
                      ...|++|+|.|.|.+|..+++.++.+|+ .|++++.++.+...+...|+. +++     ..+.+     .+.|++++++|
T Consensus       184 ~~~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~~~g~~~~i~~~~~~~~~~v~~~~~~~~d~vld~~g  263 (365)
T cd08278         184 PRPGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKELGATHVINPKEEDLVAAIREITGGGVDYALDTTG  263 (365)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCcEEecCCCcCHHHHHHHHhCCCCcEEEECCC
Confidence            3468999999999999999999999999 699999888887766666654 222     21211     46899999998


Q ss_pred             CcccCCHHHHhccCCCeEEEeccCC
Q psy4626         142 NKNVVTREHMDKMKNGCVVCNMGHS  166 (542)
Q Consensus       142 ~~~lI~~e~l~~mk~GailvnvG~g  166 (542)
                      ....+. +.++.+++++.++.+|..
T Consensus       264 ~~~~~~-~~~~~l~~~G~~v~~g~~  287 (365)
T cd08278         264 VPAVIE-QAVDALAPRGTLALVGAP  287 (365)
T ss_pred             CcHHHH-HHHHHhccCCEEEEeCcC
Confidence            766664 789999999999998864

Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=97.42  E-value=0.00065  Score=65.58  Aligned_cols=96  Identities=20%  Similarity=0.127  Sum_probs=64.6

Q ss_pred             CccccCcEEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhc-----CCce--e---eCH---HHHhcCCcEEE
Q psy4626          72 DVMFGGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACM-----DGFS--V---VKL---NEVIRTVDIVV  137 (542)
Q Consensus        72 ~~~l~GktVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~-----~G~~--v---~~l---~e~l~~aDvVi  137 (542)
                      +..+.+++++|+|. |.+|+.+++.+...|.+|+++.+++.+......     .+..  .   .+.   .+.++++|+||
T Consensus        23 ~~~l~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~diVi  102 (194)
T cd01078          23 GKDLKGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADSLRARFGEGVGAVETSDDAARAAAIKGADVVF  102 (194)
T ss_pred             CcCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCCCHHHHHHHHhcCCEEE
Confidence            34678999999996 999999999999999999999988866543211     1221  1   122   35678999999


Q ss_pred             EcCCCcccCCHHHHhccCCCeEEEeccCCC
Q psy4626         138 TATGNKNVVTREHMDKMKNGCVVCNMGHSN  167 (542)
Q Consensus       138 ~atG~~~lI~~e~l~~mk~GailvnvG~g~  167 (542)
                      .+|..........-...+++.+++++...+
T Consensus       103 ~at~~g~~~~~~~~~~~~~~~vv~D~~~~~  132 (194)
T cd01078         103 AAGAAGVELLEKLAWAPKPLAVAADVNAVP  132 (194)
T ss_pred             ECCCCCceechhhhcccCceeEEEEccCCC
Confidence            987543321111222345677888877653

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=97.39  E-value=0.0012  Score=65.56  Aligned_cols=83  Identities=25%  Similarity=0.289  Sum_probs=58.6

Q ss_pred             CccccCcEEEEEcCChhHHHHHHHHHhCCC-EEEEEeCCc----------hhhhhhhcCC-ce------eeCHHHHh-cC
Q psy4626          72 DVMFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDP----------ICALQACMDG-FS------VVKLNEVI-RT  132 (542)
Q Consensus        72 ~~~l~GktVvViG~G~IG~~vA~~l~~~Ga-~Viv~d~dp----------~r~~~A~~~G-~~------v~~l~e~l-~~  132 (542)
                      +..+.|++|+|.|+|.+|+.+|+.|..+|+ .|.+.|.+.          .........+ ..      ..+.++++ ..
T Consensus        18 ~~~l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g~i~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~   97 (217)
T cd05211          18 GDSLEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDGYIYDPGITTEELINYAVALGGSARVKVQDYFPGEAILGLD   97 (217)
T ss_pred             CCCcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCcEECCCCCHHHHHHHHHhhCCccccCcccccCcccceecc
Confidence            357899999999999999999999999998 566688877          4333222221 11      11223333 48


Q ss_pred             CcEEEEcCCCcccCCHHHHhccC
Q psy4626         133 VDIVVTATGNKNVVTREHMDKMK  155 (542)
Q Consensus       133 aDvVi~atG~~~lI~~e~l~~mk  155 (542)
                      +||++.|+.. +.++.+....++
T Consensus        98 ~DVlipaA~~-~~i~~~~a~~l~  119 (217)
T cd05211          98 VDIFAPCALG-NVIDLENAKKLK  119 (217)
T ss_pred             ccEEeecccc-CccChhhHhhcC
Confidence            9999998753 478877777776

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral

>PRK10083 putative oxidoreductase; Provisional

Probab=97.39  E-value=0.00047  Score=71.31  Aligned_cols=93  Identities=19%  Similarity=0.243  Sum_probs=71.9

Q ss_pred             cccCcEEEEEcCChhHHHHHHHHHh-CCCE-EEEEeCCchhhhhhhcCCce-eeC-----HHHHh----cCCcEEEEcCC
Q psy4626          74 MFGGKQVVLCGYGEVGKGCCQSLKG-LGCV-IYITEIDPICALQACMDGFS-VVK-----LNEVI----RTVDIVVTATG  141 (542)
Q Consensus        74 ~l~GktVvViG~G~IG~~vA~~l~~-~Ga~-Viv~d~dp~r~~~A~~~G~~-v~~-----l~e~l----~~aDvVi~atG  141 (542)
                      ...|++|+|.|.|.+|..+++.++. +|++ |++++.++.+...+...|++ +++     ..+.+    .++|++++++|
T Consensus       158 ~~~g~~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~g~~~d~vid~~g  237 (339)
T PRK10083        158 PTEQDVALIYGAGPVGLTIVQVLKGVYNVKAVIVADRIDERLALAKESGADWVINNAQEPLGEALEEKGIKPTLIIDAAC  237 (339)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHhCCcEEecCccccHHHHHhcCCCCCCEEEECCC
Confidence            4579999999999999999999996 6995 77788888887777777764 222     22323    13579999998


Q ss_pred             CcccCCHHHHhccCCCeEEEeccCCC
Q psy4626         142 NKNVVTREHMDKMKNGCVVCNMGHSN  167 (542)
Q Consensus       142 ~~~lI~~e~l~~mk~GailvnvG~g~  167 (542)
                      ....+. +.++.+++++.++++|..+
T Consensus       238 ~~~~~~-~~~~~l~~~G~~v~~g~~~  262 (339)
T PRK10083        238 HPSILE-EAVTLASPAARIVLMGFSS  262 (339)
T ss_pred             CHHHHH-HHHHHhhcCCEEEEEccCC
Confidence            655564 7899999999999998653

>PRK15059 tartronate semialdehyde reductase; Provisional

Probab=97.39  E-value=0.0006  Score=70.51  Aligned_cols=88  Identities=19%  Similarity=0.242  Sum_probs=66.5

Q ss_pred             EEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce-eeCHHHHhcCCcEEEEcCCCcccCCH------HHH
Q psy4626          79 QVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVKLNEVIRTVDIVVTATGNKNVVTR------EHM  151 (542)
Q Consensus        79 tVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~-v~~l~e~l~~aDvVi~atG~~~lI~~------e~l  151 (542)
                      +|+|||.|.+|..+++.+...|.+|+++|++|. .......|.. +.+..++++.+|+||.|..+...+..      ..+
T Consensus         2 ~Ig~IGlG~MG~~ma~~L~~~G~~v~v~~~~~~-~~~~~~~g~~~~~s~~~~~~~advVi~~v~~~~~v~~v~~~~~g~~   80 (292)
T PRK15059          2 KLGFIGLGIMGTPMAINLARAGHQLHVTTIGPV-ADELLSLGAVSVETARQVTEASDIIFIMVPDTPQVEEVLFGENGCT   80 (292)
T ss_pred             eEEEEccCHHHHHHHHHHHHCCCeEEEEeCCHh-HHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCCcchh
Confidence            699999999999999999999999999999874 3333445654 34677788999999998754432211      124


Q ss_pred             hccCCCeEEEeccCCC
Q psy4626         152 DKMKNGCVVCNMGHSN  167 (542)
Q Consensus       152 ~~mk~GailvnvG~g~  167 (542)
                      ..+++|.++++++..+
T Consensus        81 ~~~~~g~ivvd~sT~~   96 (292)
T PRK15059         81 KASLKGKTIVDMSSIS   96 (292)
T ss_pred             ccCCCCCEEEECCCCC
Confidence            4578899999988654

>PRK06141 ornithine cyclodeaminase; Validated

Probab=97.38  E-value=0.00081  Score=70.26  Aligned_cols=99  Identities=20%  Similarity=0.243  Sum_probs=70.8

Q ss_pred             ccCcEEEEEcCChhHHHHHHHHHh-CCC-EEEEEeCCchhhhhhhc----CC--cee-eCHHHHhcCCcEEEEcCCC-cc
Q psy4626          75 FGGKQVVLCGYGEVGKGCCQSLKG-LGC-VIYITEIDPICALQACM----DG--FSV-VKLNEVIRTVDIVVTATGN-KN  144 (542)
Q Consensus        75 l~GktVvViG~G~IG~~vA~~l~~-~Ga-~Viv~d~dp~r~~~A~~----~G--~~v-~~l~e~l~~aDvVi~atG~-~~  144 (542)
                      ...++++|+|+|..|+.+++.+.. ++. +|.+|++++.+......    .|  +.+ .+.++++.++|+|++||.. .+
T Consensus       123 ~~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~~g~~~~~~~~~~~av~~aDIVi~aT~s~~p  202 (314)
T PRK06141        123 KDASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRAQGFDAEVVTDLEAAVRQADIISCATLSTEP  202 (314)
T ss_pred             CCCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhcCCceEEeCCHHHHHhcCCEEEEeeCCCCC
Confidence            357899999999999999876654 564 89999999887653222    14  332 3567788999999998764 34


Q ss_pred             cCCHHHHhccCCCeEEEeccCCC---cccChHhhc
Q psy4626         145 VVTREHMDKMKNGCVVCNMGHSN---TEIDVNSLR  176 (542)
Q Consensus       145 lI~~e~l~~mk~GailvnvG~g~---~eid~~aL~  176 (542)
                      ++..   +.+++|..+.-+|...   .|++...+.
T Consensus       203 vl~~---~~l~~g~~i~~ig~~~~~~~El~~~~~~  234 (314)
T PRK06141        203 LVRG---EWLKPGTHLDLVGNFTPDMRECDDEAIR  234 (314)
T ss_pred             EecH---HHcCCCCEEEeeCCCCcccccCCHHHHh
Confidence            5653   4579999877777653   467755443

>PRK08655 prephenate dehydrogenase; Provisional

Probab=97.38  E-value=0.00058  Score=74.58  Aligned_cols=87  Identities=22%  Similarity=0.302  Sum_probs=67.7

Q ss_pred             EEEEEc-CChhHHHHHHHHHhCCCEEEEEeCCchhh-hhhhcCCceee-CHHHHhcCCcEEEEcCCCc---ccCCHHHHh
Q psy4626          79 QVVLCG-YGEVGKGCCQSLKGLGCVIYITEIDPICA-LQACMDGFSVV-KLNEVIRTVDIVVTATGNK---NVVTREHMD  152 (542)
Q Consensus        79 tVvViG-~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~-~~A~~~G~~v~-~l~e~l~~aDvVi~atG~~---~lI~~e~l~  152 (542)
                      +++|+| +|.+|..+|..++..|.+|+++++++.+. ..+...|.... +..+++..+|+||.|+...   .++ .+...
T Consensus         2 kI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~~~gv~~~~~~~e~~~~aDvVIlavp~~~~~~vl-~~l~~   80 (437)
T PRK08655          2 KISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVAKELGVEYANDNIDAAKDADIVIISVPINVTEDVI-KEVAP   80 (437)
T ss_pred             EEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHcCCeeccCHHHHhccCCEEEEecCHHHHHHHH-HHHHh
Confidence            689997 89999999999999999999999988764 33455566543 5667888999999987532   223 24455


Q ss_pred             ccCCCeEEEeccCC
Q psy4626         153 KMKNGCVVCNMGHS  166 (542)
Q Consensus       153 ~mk~GailvnvG~g  166 (542)
                      .+++++++++++..
T Consensus        81 ~l~~~~iViDvsSv   94 (437)
T PRK08655         81 HVKEGSLLMDVTSV   94 (437)
T ss_pred             hCCCCCEEEEcccc
Confidence            67899999999964

>PLN02712 arogenate dehydrogenase

Probab=97.37  E-value=0.00055  Score=78.45  Aligned_cols=91  Identities=16%  Similarity=0.265  Sum_probs=67.2

Q ss_pred             cCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCcee-eCHHHHh-cCCcEEEEcCCCc---ccCCHHH
Q psy4626          76 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV-VKLNEVI-RTVDIVVTATGNK---NVVTREH  150 (542)
Q Consensus        76 ~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v-~~l~e~l-~~aDvVi~atG~~---~lI~~e~  150 (542)
                      ..++++|||+|.+|..+|..++..|.+|+++++++.+ ..+...|... .+.++++ ..+|+||.|+...   .++..-.
T Consensus        51 ~~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~-~~A~~~Gv~~~~d~~e~~~~~aDvViLavP~~~~~~vl~~l~  129 (667)
T PLN02712         51 TQLKIAIIGFGNYGQFLAKTLISQGHTVLAHSRSDHS-LAARSLGVSFFLDPHDLCERHPDVILLCTSIISTENVLKSLP  129 (667)
T ss_pred             CCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHH-HHHHHcCCEEeCCHHHHhhcCCCEEEEcCCHHHHHHHHHhhh
Confidence            3468999999999999999999999999999987554 3455667653 3566655 5799999997532   2332111


Q ss_pred             HhccCCCeEEEeccCCC
Q psy4626         151 MDKMKNGCVVCNMGHSN  167 (542)
Q Consensus       151 l~~mk~GailvnvG~g~  167 (542)
                      +..+++++++++++.-.
T Consensus       130 ~~~l~~g~iVvDv~SvK  146 (667)
T PLN02712        130 LQRLKRNTLFVDVLSVK  146 (667)
T ss_pred             hhcCCCCeEEEECCCCc
Confidence            24578999999998654

>PRK14031 glutamate dehydrogenase; Provisional

Probab=97.36  E-value=0.0011  Score=72.23  Aligned_cols=105  Identities=17%  Similarity=0.204  Sum_probs=70.0

Q ss_pred             HHHHHHHHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCCCEEEE-Ee----------CCchhhh---hh-------
Q psy4626          58 MCRESIIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYI-TE----------IDPICAL---QA-------  116 (542)
Q Consensus        58 g~~~s~~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv-~d----------~dp~r~~---~A-------  116 (542)
                      |+-..+-+++.+. +..+.|++|+|.|+|++|...|+.|..+|++|++ .|          +|+..+.   +.       
T Consensus       210 Gv~~~~~~~~~~~-g~~l~g~rVaVQGfGNVG~~aA~~L~e~GAkVVaVSD~~G~iy~~~Gld~~~l~~~~~~k~~~~~~  288 (444)
T PRK14031        210 GNIYFLMEMLKTK-GTDLKGKVCLVSGSGNVAQYTAEKVLELGGKVVTMSDSDGYIYDPDGIDREKLDYIMELKNLYRGR  288 (444)
T ss_pred             HHHHHHHHHHHhc-CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHHHhhcCCc
Confidence            3333333333333 5679999999999999999999999999999997 67          5443221   00       


Q ss_pred             -----hcCCceeeCHHHHh-cCCcEEEEcCCCcccCCHHHHhccCC-CeEEEecc
Q psy4626         117 -----CMDGFSVVKLNEVI-RTVDIVVTATGNKNVVTREHMDKMKN-GCVVCNMG  164 (542)
Q Consensus       117 -----~~~G~~v~~l~e~l-~~aDvVi~atG~~~lI~~e~l~~mk~-GailvnvG  164 (542)
                           ...+...++.++.+ ..|||++-|. ..+.|+.+....++. |+.+|.-|
T Consensus       289 v~~~~~~~ga~~i~~d~~~~~~cDIliPaA-l~n~I~~~na~~l~a~g~~~V~Eg  342 (444)
T PRK14031        289 IREYAEKYGCKYVEGARPWGEKGDIALPSA-TQNELNGDDARQLVANGVIAVSEG  342 (444)
T ss_pred             hhhhHhhcCCEEcCCcccccCCCcEEeecc-cccccCHHHHHHHHhcCCeEEECC
Confidence                 01133444445554 5799999876 346888888888854 55555444

>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2

Probab=97.36  E-value=0.00083  Score=69.48  Aligned_cols=104  Identities=23%  Similarity=0.288  Sum_probs=76.7

Q ss_pred             HHHHHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCCC-EEEEEeCCchhhhhhhcCCceeeC-----HH----HHh
Q psy4626          61 ESIIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMDGFSVVK-----LN----EVI  130 (542)
Q Consensus        61 ~s~~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga-~Viv~d~dp~r~~~A~~~G~~v~~-----l~----e~l  130 (542)
                      ...|+++...  ....|++|+|.|.|.+|..+++.++.+|+ +|++++.++.+...+...|....+     ..    +..
T Consensus       154 ~ta~~~~~~~--~~~~~~~vlI~g~g~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~  231 (344)
T cd08284         154 PTGYFGAKRA--QVRPGDTVAVIGCGPVGLCAVLSAQVLGAARVFAVDPVPERLERAAALGAEPINFEDAEPVERVREAT  231 (344)
T ss_pred             HHHHhhhHhc--CCccCCEEEEECCcHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHHhCCeEEecCCcCHHHHHHHHh
Confidence            3445555442  34579999999999999999999999997 899998777776655566643221     11    122


Q ss_pred             --cCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCCC
Q psy4626         131 --RTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSN  167 (542)
Q Consensus       131 --~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g~  167 (542)
                        ++.|++++++|....+. +.++.+++++.++.+|..+
T Consensus       232 ~~~~~dvvid~~~~~~~~~-~~~~~l~~~g~~v~~g~~~  269 (344)
T cd08284         232 EGRGADVVLEAVGGAAALD-LAFDLVRPGGVISSVGVHT  269 (344)
T ss_pred             CCCCCCEEEECCCCHHHHH-HHHHhcccCCEEEEECcCC
Confidence              46899999988655553 7889999999999998653

Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=97.35  E-value=0.00061  Score=69.98  Aligned_cols=86  Identities=19%  Similarity=0.232  Sum_probs=61.4

Q ss_pred             cEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhc-------------------------CCce-eeCHHHHhc
Q psy4626          78 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACM-------------------------DGFS-VVKLNEVIR  131 (542)
Q Consensus        78 ktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~-------------------------~G~~-v~~l~e~l~  131 (542)
                      ++|+|+|.|.+|.++|..+...|.+|+++|+++.....+..                         .... ..+++++++
T Consensus         4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a~~   83 (287)
T PRK08293          4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAEAVK   83 (287)
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHHHhc
Confidence            47999999999999999999999999999999865433211                         1111 345667889


Q ss_pred             CCcEEEEcCCCc-----ccCCHHHHhccCCCeEEE-ecc
Q psy4626         132 TVDIVVTATGNK-----NVVTREHMDKMKNGCVVC-NMG  164 (542)
Q Consensus       132 ~aDvVi~atG~~-----~lI~~e~l~~mk~Gailv-nvG  164 (542)
                      ++|+||+|....     .++ .+.-+.++++++++ |++
T Consensus        84 ~aDlVieavpe~~~~k~~~~-~~l~~~~~~~~ii~sntS  121 (287)
T PRK08293         84 DADLVIEAVPEDPEIKGDFY-EELAKVAPEKTIFATNSS  121 (287)
T ss_pred             CCCEEEEeccCCHHHHHHHH-HHHHhhCCCCCEEEECcc
Confidence            999999987532     122 23334568888885 444

>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases

Probab=97.34  E-value=0.00088  Score=71.10  Aligned_cols=92  Identities=20%  Similarity=0.244  Sum_probs=71.1

Q ss_pred             cccCcEEEEEcCChhHHHHHHHHHhCCC-EEEEEeCCchhhhhhhcCCce-eeC-------HHHHh-----cCCcEEEEc
Q psy4626          74 MFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMDGFS-VVK-------LNEVI-----RTVDIVVTA  139 (542)
Q Consensus        74 ~l~GktVvViG~G~IG~~vA~~l~~~Ga-~Viv~d~dp~r~~~A~~~G~~-v~~-------l~e~l-----~~aDvVi~a  139 (542)
                      ...|++|+|+|.|.+|..+++.++.+|+ +|++++.++.+...+...|++ +++       ..+.+     .+.|+++++
T Consensus       188 ~~~g~~VlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~a~~lGa~~~i~~~~~~~~~~~~v~~~~~~~~d~vld~  267 (373)
T cd08299         188 VTPGSTCAVFGLGGVGLSAIMGCKAAGASRIIAVDINKDKFAKAKELGATECINPQDYKKPIQEVLTEMTDGGVDFSFEV  267 (373)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEecccccchhHHHHHHHHhCCCCeEEEEC
Confidence            4569999999999999999999999999 899999999888877777763 222       11211     369999999


Q ss_pred             CCCcccCCHHHHhcc-CCCeEEEeccCC
Q psy4626         140 TGNKNVVTREHMDKM-KNGCVVCNMGHS  166 (542)
Q Consensus       140 tG~~~lI~~e~l~~m-k~GailvnvG~g  166 (542)
                      +|....+. +.+..+ ++++.++.+|..
T Consensus       268 ~g~~~~~~-~~~~~~~~~~G~~v~~g~~  294 (373)
T cd08299         268 IGRLDTMK-AALASCHEGYGVSVIVGVP  294 (373)
T ss_pred             CCCcHHHH-HHHHhhccCCCEEEEEccC
Confidence            98755554 445544 678999999865

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically

>cd08246 crotonyl_coA_red crotonyl-CoA reductase

Probab=97.33  E-value=0.0015  Score=69.38  Aligned_cols=91  Identities=19%  Similarity=0.196  Sum_probs=70.8

Q ss_pred             cccCcEEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce-eeC--------------------------
Q psy4626          74 MFGGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVK--------------------------  125 (542)
Q Consensus        74 ~l~GktVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~-v~~--------------------------  125 (542)
                      ...|.+|+|.|. |.+|..+++.++.+|++|++++.++.+...+...|.. +++                          
T Consensus       191 ~~~g~~vlV~ga~g~iG~a~~~lak~~G~~vv~~~~s~~~~~~~~~~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (393)
T cd08246         191 VKPGDNVLIWGASGGLGSMAIQLARAAGANPVAVVSSEEKAEYCRALGAEGVINRRDFDHWGVLPDVNSEAYTAWTKEAR  270 (393)
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHcCCCEEEcccccccccccccccchhhhhhhhccc
Confidence            457899999997 9999999999999999999998888887777667742 121                          


Q ss_pred             -HHH----Hh--c-CCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCC
Q psy4626         126 -LNE----VI--R-TVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHS  166 (542)
Q Consensus       126 -l~e----~l--~-~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g  166 (542)
                       +.+    +.  . ++|++++++|.. .+ .+.++.+++++.++.+|..
T Consensus       271 ~~~~~v~~l~~~~~g~d~vid~~g~~-~~-~~~~~~l~~~G~~v~~g~~  317 (393)
T cd08246         271 RFGKAIWDILGGREDPDIVFEHPGRA-TF-PTSVFVCDRGGMVVICAGT  317 (393)
T ss_pred             hHHHHHHHHhCCCCCCeEEEECCchH-hH-HHHHHHhccCCEEEEEccc
Confidence             111    11  2 689999999863 45 3689999999999998753

Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=97.33  E-value=0.00067  Score=73.28  Aligned_cols=88  Identities=18%  Similarity=0.262  Sum_probs=65.4

Q ss_pred             EEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhc-------------------CC-cee-eCHHHHhcCCcEEE
Q psy4626          79 QVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACM-------------------DG-FSV-VKLNEVIRTVDIVV  137 (542)
Q Consensus        79 tVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~-------------------~G-~~v-~~l~e~l~~aDvVi  137 (542)
                      +|+|+|.|.+|..+|..+...|.+|+++|+++.+......                   .| ... .++.++++++|+||
T Consensus         2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~~~~~~~~~~advvi   81 (411)
T TIGR03026         2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRATTDYEDAIRDADVII   81 (411)
T ss_pred             EEEEECCCchhHHHHHHHHhcCCeEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEECCHHHHHhhCCEEE
Confidence            6999999999999999999999999999999876543211                   23 222 35667788999999


Q ss_pred             EcCCCccc---------C-C--HHHHhccCCCeEEEeccCC
Q psy4626         138 TATGNKNV---------V-T--REHMDKMKNGCVVCNMGHS  166 (542)
Q Consensus       138 ~atG~~~l---------I-~--~e~l~~mk~GailvnvG~g  166 (542)
                      .|.+++.-         + .  ....+.+++|.++++.+.-
T Consensus        82 i~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~STv  122 (411)
T TIGR03026        82 ICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLESTV  122 (411)
T ss_pred             EEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeCcC
Confidence            99876531         1 1  2234567899999987753

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=97.32  E-value=0.00071  Score=75.19  Aligned_cols=90  Identities=18%  Similarity=0.257  Sum_probs=62.7

Q ss_pred             CcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhh-----------hcCCc-------------e-eeCHHHHhc
Q psy4626          77 GKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQA-----------CMDGF-------------S-VVKLNEVIR  131 (542)
Q Consensus        77 GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A-----------~~~G~-------------~-v~~l~e~l~  131 (542)
                      =++|+|||.|.+|.++|+.+...|.+|+++|+++..+..+           ...|.             . ..+++ .+.
T Consensus         5 ~~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~-~l~   83 (503)
T TIGR02279         5 VVTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVTDLH-ALA   83 (503)
T ss_pred             ccEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeCCHH-HhC
Confidence            3579999999999999999999999999999998776432           22331             1 23343 457


Q ss_pred             CCcEEEEcCCCcccCCHHH---H-hccCCCeEEE-eccCCC
Q psy4626         132 TVDIVVTATGNKNVVTREH---M-DKMKNGCVVC-NMGHSN  167 (542)
Q Consensus       132 ~aDvVi~atG~~~lI~~e~---l-~~mk~Gailv-nvG~g~  167 (542)
                      +||+||+|.-...-+..+.   + ..++++++++ |++..+
T Consensus        84 ~aDlVIEav~E~~~vK~~vf~~l~~~~~~~~IlasnTStl~  124 (503)
T TIGR02279        84 DAGLVIEAIVENLEVKKALFAQLEELCPADTIIASNTSSLS  124 (503)
T ss_pred             CCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCC
Confidence            9999999864322222222   2 3468888877 766544

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=97.32  E-value=0.0021  Score=65.07  Aligned_cols=100  Identities=25%  Similarity=0.314  Sum_probs=75.4

Q ss_pred             HHHHHHhhcCccccCcEEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce-ee-CHHHHh-cCCcEEEE
Q psy4626          63 IIDSLKRSTDVMFGGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VV-KLNEVI-RTVDIVVT  138 (542)
Q Consensus        63 ~~~ai~r~~~~~l~GktVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~-v~-~l~e~l-~~aDvVi~  138 (542)
                      .++++.+.. . ..|.+|+|.|. |.+|..+++.++.+|++|++++.++.+...+...|+. .. ..++.. .+.|++++
T Consensus       121 a~~~~~~~~-~-~~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~vl~  198 (305)
T cd08270         121 ALRALRRGG-P-LLGRRVLVTGASGGVGRFAVQLAALAGAHVVAVVGSPARAEGLRELGAAEVVVGGSELSGAPVDLVVD  198 (305)
T ss_pred             HHHHHHHhC-C-CCCCEEEEECCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCcEEEeccccccCCCceEEEE
Confidence            345544442 2 35999999999 8999999999999999999998888777766666653 21 212222 36899999


Q ss_pred             cCCCcccCCHHHHhccCCCeEEEeccCC
Q psy4626         139 ATGNKNVVTREHMDKMKNGCVVCNMGHS  166 (542)
Q Consensus       139 atG~~~lI~~e~l~~mk~GailvnvG~g  166 (542)
                      ++|... + .+.++.|+.++.++.+|..
T Consensus       199 ~~g~~~-~-~~~~~~l~~~G~~v~~g~~  224 (305)
T cd08270         199 SVGGPQ-L-ARALELLAPGGTVVSVGSS  224 (305)
T ss_pred             CCCcHH-H-HHHHHHhcCCCEEEEEecc
Confidence            998753 4 4689999999999999854

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2

Probab=97.31  E-value=0.0014  Score=66.58  Aligned_cols=95  Identities=18%  Similarity=0.257  Sum_probs=64.1

Q ss_pred             CccccCcEEEEEcCChhHHHHHHHHHhCCCEEE-EEeC----------Cchhh-----hhhh--------cC---Cceee
Q psy4626          72 DVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIY-ITEI----------DPICA-----LQAC--------MD---GFSVV  124 (542)
Q Consensus        72 ~~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Vi-v~d~----------dp~r~-----~~A~--------~~---G~~v~  124 (542)
                      +..+.|++|+|.|+|.+|+.+|+.|..+|++|+ +.|.          |+..+     ....        ..   +.+.+
T Consensus        33 ~~~l~g~~vaIqGfGnVG~~~a~~L~e~GakvvaVsD~~G~i~~~~Gld~~~l~~l~~~~~~~~~~v~~~~~~~~~a~~~  112 (254)
T cd05313          33 NETLKGKRVAISGSGNVAQYAAEKLLELGAKVVTLSDSKGYVYDPDGFTGEKLAELKEIKEVRRGRVSEYAKKYGTAKYF  112 (254)
T ss_pred             CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCceEECCCCCCHHHHHHHHHHHHhcCCcHHHHhhcCCCCEEe
Confidence            567899999999999999999999999999999 6661          11111     0000        01   23445


Q ss_pred             CHHHHh-cCCcEEEEcCCCcccCCHHHHhccC-CCeEEE-eccCCC
Q psy4626         125 KLNEVI-RTVDIVVTATGNKNVVTREHMDKMK-NGCVVC-NMGHSN  167 (542)
Q Consensus       125 ~l~e~l-~~aDvVi~atG~~~lI~~e~l~~mk-~Gailv-nvG~g~  167 (542)
                      +.++++ ..|||++-|. ..+.|+.+..+.++ +++.+| -.+-++
T Consensus       113 ~~~~~~~~~~DIliPcA-l~~~I~~~na~~i~~~~ak~I~EgAN~p  157 (254)
T cd05313         113 EGKKPWEVPCDIAFPCA-TQNEVDAEDAKLLVKNGCKYVAEGANMP  157 (254)
T ss_pred             CCcchhcCCCcEEEecc-ccccCCHHHHHHHHHcCCEEEEeCCCCC
Confidence            555655 5899999975 44689988888774 355554 433333

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t

>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1

Probab=97.30  E-value=0.0016  Score=67.07  Aligned_cols=89  Identities=17%  Similarity=0.096  Sum_probs=69.1

Q ss_pred             cCcEEEEE--cCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce-eeC-----HHH----Hh--cCCcEEEEcCC
Q psy4626          76 GGKQVVLC--GYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVK-----LNE----VI--RTVDIVVTATG  141 (542)
Q Consensus        76 ~GktVvVi--G~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~-v~~-----l~e----~l--~~aDvVi~atG  141 (542)
                      .|.+++|+  |.|.+|..+++.++.+|++|++++.++.+...+...|++ +++     ..+    ..  .+.|++++++|
T Consensus       142 ~~~~vlv~~~g~g~vG~~a~q~a~~~G~~vi~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~v~~~~~~~~~d~vid~~g  221 (324)
T cd08291         142 EGAKAVVHTAAASALGRMLVRLCKADGIKVINIVRRKEQVDLLKKIGAEYVLNSSDPDFLEDLKELIAKLNATIFFDAVG  221 (324)
T ss_pred             CCCcEEEEccCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCcEEEECCCccHHHHHHHHhCCCCCcEEEECCC
Confidence            56666664  889999999999999999999999888888777777764 222     211    22  36899999998


Q ss_pred             CcccCCHHHHhccCCCeEEEeccCC
Q psy4626         142 NKNVVTREHMDKMKNGCVVCNMGHS  166 (542)
Q Consensus       142 ~~~lI~~e~l~~mk~GailvnvG~g  166 (542)
                      ....  .+.++.+++++.++.+|..
T Consensus       222 ~~~~--~~~~~~l~~~G~~v~~g~~  244 (324)
T cd08291         222 GGLT--GQILLAMPYGSTLYVYGYL  244 (324)
T ss_pred             cHHH--HHHHHhhCCCCEEEEEEec
Confidence            7544  3578899999999998853

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin

>PRK09414 glutamate dehydrogenase; Provisional

Probab=97.29  E-value=0.0013  Score=71.93  Aligned_cols=90  Identities=21%  Similarity=0.247  Sum_probs=63.6

Q ss_pred             CccccCcEEEEEcCChhHHHHHHHHHhCCCEEEEE-e----------CCchhhhhhhcC------------CceeeCHHH
Q psy4626          72 DVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYIT-E----------IDPICALQACMD------------GFSVVKLNE  128 (542)
Q Consensus        72 ~~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~-d----------~dp~r~~~A~~~------------G~~v~~l~e  128 (542)
                      +..+.|++|+|.|+|.+|+.+|+.|..+|++|+++ |          +|+..+.+....            |...++.++
T Consensus       227 ~~~l~g~rVaIqGfGnVG~~~A~~L~~~GakVVavsDs~G~iyn~~GLD~~~L~~~k~~~~~~l~~~~~~~~~~~i~~~~  306 (445)
T PRK09414        227 GDSFEGKRVVVSGSGNVAIYAIEKAQQLGAKVVTCSDSSGYVYDEEGIDLEKLKEIKEVRRGRISEYAEEFGAEYLEGGS  306 (445)
T ss_pred             CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHhcCCchhhhhhhcCCeecCCcc
Confidence            56789999999999999999999999999999987 8          665533221110            222334444


Q ss_pred             Hh-cCCcEEEEcCCCcccCCHHHHhcc-CCCeEEEe
Q psy4626         129 VI-RTVDIVVTATGNKNVVTREHMDKM-KNGCVVCN  162 (542)
Q Consensus       129 ~l-~~aDvVi~atG~~~lI~~e~l~~m-k~Gailvn  162 (542)
                      ++ ..|||+|.|+ ..+.|+.+....+ ++++.+|-
T Consensus       307 i~~~d~DVliPaA-l~n~It~~~a~~i~~~~akiIv  341 (445)
T PRK09414        307 PWSVPCDIALPCA-TQNELDEEDAKTLIANGVKAVA  341 (445)
T ss_pred             ccccCCcEEEecC-CcCcCCHHHHHHHHHcCCeEEE
Confidence            44 4799999987 3468887766666 34565554

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=97.29  E-value=0.00022  Score=62.37  Aligned_cols=87  Identities=16%  Similarity=0.189  Sum_probs=60.2

Q ss_pred             cccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce--eeCHHHHhcCCcEEEEcCCCcccCCHHHH
Q psy4626          74 MFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS--VVKLNEVIRTVDIVVTATGNKNVVTREHM  151 (542)
Q Consensus        74 ~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~--v~~l~e~l~~aDvVi~atG~~~lI~~e~l  151 (542)
                      .+.|++|+|+|.|++|..-++.|...|++|+++..+. ..   ....+.  ....++.+.++|+|+.+++.+. ++.+..
T Consensus         4 ~l~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~-~~---~~~~i~~~~~~~~~~l~~~~lV~~at~d~~-~n~~i~   78 (103)
T PF13241_consen    4 DLKGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI-EF---SEGLIQLIRREFEEDLDGADLVFAATDDPE-LNEAIY   78 (103)
T ss_dssp             --TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE-HH---HHTSCEEEESS-GGGCTTESEEEE-SS-HH-HHHHHH
T ss_pred             EcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch-hh---hhhHHHHHhhhHHHHHhhheEEEecCCCHH-HHHHHH
Confidence            4689999999999999999999999999999998664 11   111122  1223455788999999998765 445566


Q ss_pred             hccCCCeEEEeccC
Q psy4626         152 DKMKNGCVVCNMGH  165 (542)
Q Consensus       152 ~~mk~GailvnvG~  165 (542)
                      +..+.-++++|+.-
T Consensus        79 ~~a~~~~i~vn~~D   92 (103)
T PF13241_consen   79 ADARARGILVNVVD   92 (103)
T ss_dssp             HHHHHTTSEEEETT
T ss_pred             HHHhhCCEEEEECC
Confidence            66677778888763

>PLN02477 glutamate dehydrogenase

Probab=97.28  E-value=0.0014  Score=70.82  Aligned_cols=84  Identities=19%  Similarity=0.366  Sum_probs=60.3

Q ss_pred             cCccccCcEEEEEcCChhHHHHHHHHHhCCCEEE-EEeCC----------chhhhhhh--------cCCceeeCHHHHh-
Q psy4626          71 TDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIY-ITEID----------PICALQAC--------MDGFSVVKLNEVI-  130 (542)
Q Consensus        71 ~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Vi-v~d~d----------p~r~~~A~--------~~G~~v~~l~e~l-  130 (542)
                      .+..+.|++|+|.|+|++|+.+|+.|...|++|+ |.|.+          +..+.+..        ..+...++.++++ 
T Consensus       200 ~g~~l~g~~VaIqGfGnVG~~~A~~L~e~GakVVaVsD~~G~iy~~~GLD~~~L~~~k~~~g~l~~~~~a~~i~~~e~l~  279 (410)
T PLN02477        200 HGKSIAGQTFVIQGFGNVGSWAAQLIHEKGGKIVAVSDITGAVKNENGLDIPALRKHVAEGGGLKGFPGGDPIDPDDILV  279 (410)
T ss_pred             cCCCccCCEEEEECCCHHHHHHHHHHHHcCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCchhccccceEecCcccee
Confidence            4567899999999999999999999999999999 77765          33322211        1122334445544 


Q ss_pred             cCCcEEEEcCCCcccCCHHHHhccC
Q psy4626         131 RTVDIVVTATGNKNVVTREHMDKMK  155 (542)
Q Consensus       131 ~~aDvVi~atG~~~lI~~e~l~~mk  155 (542)
                      ..|||++-|. ..+.|+.+....++
T Consensus       280 ~~~DvliP~A-l~~~I~~~na~~i~  303 (410)
T PLN02477        280 EPCDVLIPAA-LGGVINKENAADVK  303 (410)
T ss_pred             ccccEEeecc-ccccCCHhHHHHcC
Confidence            5899999975 33478888787774

>TIGR02992 ectoine_eutC ectoine utilization protein EutC

Probab=97.28  E-value=0.0012  Score=69.35  Aligned_cols=98  Identities=23%  Similarity=0.224  Sum_probs=72.6

Q ss_pred             cCcEEEEEcCChhHHHHHHHHH-hCCC-EEEEEeCCchhhhh-hhc----CCcee---eCHHHHhcCCcEEEEcCCC-cc
Q psy4626          76 GGKQVVLCGYGEVGKGCCQSLK-GLGC-VIYITEIDPICALQ-ACM----DGFSV---VKLNEVIRTVDIVVTATGN-KN  144 (542)
Q Consensus        76 ~GktVvViG~G~IG~~vA~~l~-~~Ga-~Viv~d~dp~r~~~-A~~----~G~~v---~~l~e~l~~aDvVi~atG~-~~  144 (542)
                      ..++++|+|+|..|+..+..+. .++. +|.++++++.++.. +..    .|..+   .++++++.++|+||+||.. .+
T Consensus       128 ~~~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~g~~v~~~~~~~~av~~aDiVvtaT~s~~p  207 (326)
T TIGR02992       128 DSSVVAIFGAGMQARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSLLGIDVTAATDPRAAMSGADIIVTTTPSETP  207 (326)
T ss_pred             CCcEEEEECCCHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhccCCEEEEecCCCCc
Confidence            4679999999999999999987 5785 89999999987653 211    24443   3567888999999998864 45


Q ss_pred             cCCHHHHhccCCCeEEEeccCC---CcccChHhhc
Q psy4626         145 VVTREHMDKMKNGCVVCNMGHS---NTEIDVNSLR  176 (542)
Q Consensus       145 lI~~e~l~~mk~GailvnvG~g---~~eid~~aL~  176 (542)
                      ++..+   .+++|..+..+|..   ..|+|.+-+.
T Consensus       208 ~i~~~---~l~~g~~i~~vg~~~p~~rEld~~~l~  239 (326)
T TIGR02992       208 ILHAE---WLEPGQHVTAMGSDAEHKNEIDPAVIA  239 (326)
T ss_pred             EecHH---HcCCCcEEEeeCCCCCCceecCHHHHh
Confidence            56543   47899999988865   3566655543

Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=97.28  E-value=0.0018  Score=63.58  Aligned_cols=92  Identities=23%  Similarity=0.276  Sum_probs=70.9

Q ss_pred             ccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce-eeC-----HHHH-----hcCCcEEEEcCCCc
Q psy4626          75 FGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVK-----LNEV-----IRTVDIVVTATGNK  143 (542)
Q Consensus        75 l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~-v~~-----l~e~-----l~~aDvVi~atG~~  143 (542)
                      ..|++|+|.|.|.+|+.+++.++..|.+|++++.++.+...+...|.. +.+     ..+.     -...|++++++|..
T Consensus       133 ~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~  212 (271)
T cd05188         133 KPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKELGADHVIDYKEEDLEEELRLTGGGGADVVIDAVGGP  212 (271)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCCceeccCCcCCHHHHHHHhcCCCCCEEEECCCCH
Confidence            579999999999999999999999999999999888776655555543 221     1111     15689999998864


Q ss_pred             ccCCHHHHhccCCCeEEEeccCCC
Q psy4626         144 NVVTREHMDKMKNGCVVCNMGHSN  167 (542)
Q Consensus       144 ~lI~~e~l~~mk~GailvnvG~g~  167 (542)
                      ..+ ...++.|++++.++..|..+
T Consensus       213 ~~~-~~~~~~l~~~G~~v~~~~~~  235 (271)
T cd05188         213 ETL-AQALRLLRPGGRIVVVGGTS  235 (271)
T ss_pred             HHH-HHHHHhcccCCEEEEEccCC
Confidence            444 36788999999999988653

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=97.28  E-value=0.00092  Score=69.40  Aligned_cols=65  Identities=18%  Similarity=0.273  Sum_probs=51.1

Q ss_pred             cEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhh-----------hcCCc-------------e-eeCHHHHhcC
Q psy4626          78 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQA-----------CMDGF-------------S-VVKLNEVIRT  132 (542)
Q Consensus        78 ktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A-----------~~~G~-------------~-v~~l~e~l~~  132 (542)
                      ++|+|+|.|.+|..+|..+...|.+|+++|+++.....+           ...|.             . +.++.+++++
T Consensus         3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~a~~~   82 (308)
T PRK06129          3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLADAVAD   82 (308)
T ss_pred             cEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHHhhCC
Confidence            479999999999999999999999999999998654432           12332             2 3456778899


Q ss_pred             CcEEEEcCCC
Q psy4626         133 VDIVVTATGN  142 (542)
Q Consensus       133 aDvVi~atG~  142 (542)
                      +|+|++|...
T Consensus        83 ad~Vi~avpe   92 (308)
T PRK06129         83 ADYVQESAPE   92 (308)
T ss_pred             CCEEEECCcC
Confidence            9999998753

>PRK06823 ornithine cyclodeaminase; Validated

Probab=97.27  E-value=0.0014  Score=68.57  Aligned_cols=98  Identities=17%  Similarity=0.287  Sum_probs=73.1

Q ss_pred             cCcEEEEEcCChhHHHHHHHHHh-CCC-EEEEEeCCchhhhhh----hcCCcee---eCHHHHhcCCcEEEEcCC-Cccc
Q psy4626          76 GGKQVVLCGYGEVGKGCCQSLKG-LGC-VIYITEIDPICALQA----CMDGFSV---VKLNEVIRTVDIVVTATG-NKNV  145 (542)
Q Consensus        76 ~GktVvViG~G~IG~~vA~~l~~-~Ga-~Viv~d~dp~r~~~A----~~~G~~v---~~l~e~l~~aDvVi~atG-~~~l  145 (542)
                      .-++++|+|+|..++..++.+.. +.. +|.+|++++.++...    ...++.+   .+.++++++||||++||. +.++
T Consensus       127 d~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIV~taT~s~~P~  206 (315)
T PRK06823        127 HVSAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQALGFAVNTTLDAAEVAHAANLIVTTTPSREPL  206 (315)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhcCCcEEEECCHHHHhcCCCEEEEecCCCCce
Confidence            35799999999999888777653 344 899999999886531    2224443   357888999999999875 4466


Q ss_pred             CCHHHHhccCCCeEEEeccCC---CcccChHhhc
Q psy4626         146 VTREHMDKMKNGCVVCNMGHS---NTEIDVNSLR  176 (542)
Q Consensus       146 I~~e~l~~mk~GailvnvG~g---~~eid~~aL~  176 (542)
                      +..   +.+|+|..+..+|.+   ..|+|.+-+.
T Consensus       207 ~~~---~~l~~G~hi~~iGs~~p~~~Eld~~~l~  237 (315)
T PRK06823        207 LQA---EDIQPGTHITAVGADSPGKQELDAELVA  237 (315)
T ss_pred             eCH---HHcCCCcEEEecCCCCcccccCCHHHHh
Confidence            654   457899999999976   2688876655

>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]

Probab=97.26  E-value=0.00065  Score=69.95  Aligned_cols=90  Identities=26%  Similarity=0.337  Sum_probs=65.4

Q ss_pred             CcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchh--hhhhhcCCcee---eCH-HHHhcCCcEEEEcCC---CcccCC
Q psy4626          77 GKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPIC--ALQACMDGFSV---VKL-NEVIRTVDIVVTATG---NKNVVT  147 (542)
Q Consensus        77 GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r--~~~A~~~G~~v---~~l-~e~l~~aDvVi~atG---~~~lI~  147 (542)
                      -.+|+|+|+|-||..+|+.++..|..|.++++|...  ...+...|...   .+. .+....+|+||.++.   +..++ 
T Consensus         3 ~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv~d~~~~~~~~~~~~~aD~VivavPi~~~~~~l-   81 (279)
T COG0287           3 SMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELGVIDELTVAGLAEAAAEADLVIVAVPIEATEEVL-   81 (279)
T ss_pred             CcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcCcccccccchhhhhcccCCEEEEeccHHHHHHHH-
Confidence            468999999999999999999999988777766654  33444455421   222 456688999999874   23334 


Q ss_pred             HHHHhccCCCeEEEeccCCC
Q psy4626         148 REHMDKMKNGCVVCNMGHSN  167 (542)
Q Consensus       148 ~e~l~~mk~GailvnvG~g~  167 (542)
                      ++....+|+|++++.+|+-.
T Consensus        82 ~~l~~~l~~g~iv~Dv~S~K  101 (279)
T COG0287          82 KELAPHLKKGAIVTDVGSVK  101 (279)
T ss_pred             HHhcccCCCCCEEEeccccc
Confidence            23334688999999999875

>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD)

Probab=97.25  E-value=0.0018  Score=66.63  Aligned_cols=100  Identities=16%  Similarity=0.104  Sum_probs=74.4

Q ss_pred             HHHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce-eeCHHH-HhcCCcEEEEcC
Q psy4626          63 IIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVKLNE-VIRTVDIVVTAT  140 (542)
Q Consensus        63 ~~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~-v~~l~e-~l~~aDvVi~at  140 (542)
                      .|+++..+  ....|.+++|.|.|.+|..+++.++..|++|++++.++.+...+...|.. +.+.++ .-++.|++++++
T Consensus       156 a~~~~~~~--~~~~~~~vlV~g~g~vg~~~~~la~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~vD~vi~~~  233 (329)
T cd08298         156 GYRALKLA--GLKPGQRLGLYGFGASAHLALQIARYQGAEVFAFTRSGEHQELARELGADWAGDSDDLPPEPLDAAIIFA  233 (329)
T ss_pred             HHHHHHhh--CCCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEcCChHHHHHHHHhCCcEEeccCccCCCcccEEEEcC
Confidence            45555332  34578999999999999999999999999999998888777666666764 222222 124689999987


Q ss_pred             CCcccCCHHHHhccCCCeEEEeccC
Q psy4626         141 GNKNVVTREHMDKMKNGCVVCNMGH  165 (542)
Q Consensus       141 G~~~lI~~e~l~~mk~GailvnvG~  165 (542)
                      +....+ .+.++.+++++.++..|.
T Consensus       234 ~~~~~~-~~~~~~l~~~G~~v~~g~  257 (329)
T cd08298         234 PVGALV-PAALRAVKKGGRVVLAGI  257 (329)
T ss_pred             CcHHHH-HHHHHHhhcCCEEEEEcC
Confidence            655555 478999999999998773

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=97.25  E-value=0.001  Score=68.81  Aligned_cols=86  Identities=15%  Similarity=0.203  Sum_probs=62.2

Q ss_pred             EEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcC--------------Cce-eeCHHHHhcCCcEEEEcCCCc
Q psy4626          79 QVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMD--------------GFS-VVKLNEVIRTVDIVVTATGNK  143 (542)
Q Consensus        79 tVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~--------------G~~-v~~l~e~l~~aDvVi~atG~~  143 (542)
                      +|+|+|+|.+|..+|..|...|.+|.++++++.+.......              +.. ..+.++++..+|+||.|+.+.
T Consensus         3 kI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~v~~~   82 (325)
T PRK00094          3 KIAVLGAGSWGTALAIVLARNGHDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEALADADLILVAVPSQ   82 (325)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHhCCCEEEEeCCHH
Confidence            69999999999999999999999999999988665433332              222 235566788999999998653


Q ss_pred             ccCC--HHHHhccCCCeEEEecc
Q psy4626         144 NVVT--REHMDKMKNGCVVCNMG  164 (542)
Q Consensus       144 ~lI~--~e~l~~mk~GailvnvG  164 (542)
                      .+-.  .+....++++.+++++.
T Consensus        83 ~~~~v~~~l~~~~~~~~~vi~~~  105 (325)
T PRK00094         83 ALREVLKQLKPLLPPDAPIVWAT  105 (325)
T ss_pred             HHHHHHHHHHhhcCCCCEEEEEe
Confidence            2211  12334457788888775

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=97.24  E-value=0.0006  Score=67.10  Aligned_cols=91  Identities=16%  Similarity=0.238  Sum_probs=65.7

Q ss_pred             ccccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhh-hhcCC-ceeeC---HHHHhcCCcEEEEcCCCcccCC
Q psy4626          73 VMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQ-ACMDG-FSVVK---LNEVIRTVDIVVTATGNKNVVT  147 (542)
Q Consensus        73 ~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~-A~~~G-~~v~~---l~e~l~~aDvVi~atG~~~lI~  147 (542)
                      ..+.|++|+|+|.|.+|..-++.|...|++|+|++.++....+ ....| .....   ..+.+.++|+||.+|+.+. ++
T Consensus         5 l~l~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~~~l~~l~~~~~i~~~~~~~~~~dl~~~~lVi~at~d~~-ln   83 (205)
T TIGR01470         5 ANLEGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEELESELTLLAEQGGITWLARCFDADILEGAFLVIAATDDEE-LN   83 (205)
T ss_pred             EEcCCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHcCCEEEEeCCCCHHHhCCcEEEEECCCCHH-HH
Confidence            3578999999999999999999999999999999866543221 11222 32221   1345689999999998854 45


Q ss_pred             HHHHhccCCCeEEEecc
Q psy4626         148 REHMDKMKNGCVVCNMG  164 (542)
Q Consensus       148 ~e~l~~mk~GailvnvG  164 (542)
                      .......+.-++++|+.
T Consensus        84 ~~i~~~a~~~~ilvn~~  100 (205)
T TIGR01470        84 RRVAHAARARGVPVNVV  100 (205)
T ss_pred             HHHHHHHHHcCCEEEEC
Confidence            56666667777888866

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

Probab=97.24  E-value=0.00092  Score=74.12  Aligned_cols=89  Identities=13%  Similarity=0.173  Sum_probs=62.0

Q ss_pred             cEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhh-------------------cCC-ce-eeCHHHHhcCCcEE
Q psy4626          78 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQAC-------------------MDG-FS-VVKLNEVIRTVDIV  136 (542)
Q Consensus        78 ktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~-------------------~~G-~~-v~~l~e~l~~aDvV  136 (542)
                      ++|+|||+|.+|.++|..+...|.+|+++|++|.+.....                   ..| .. ..++.+++++||+|
T Consensus         5 ~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~~~ea~~~aD~V   84 (495)
T PRK07531          5 MKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCASLAEAVAGADWI   84 (495)
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCCHHHHhcCCCEE
Confidence            4799999999999999999999999999999987643211                   012 22 33567788999999


Q ss_pred             EEcCCCcccCCH----HHHhccCCCeEEEeccCC
Q psy4626         137 VTATGNKNVVTR----EHMDKMKNGCVVCNMGHS  166 (542)
Q Consensus       137 i~atG~~~lI~~----e~l~~mk~GailvnvG~g  166 (542)
                      +++.....-+..    +.-..++++++|.+...+
T Consensus        85 ieavpe~~~vk~~l~~~l~~~~~~~~iI~SsTsg  118 (495)
T PRK07531         85 QESVPERLDLKRRVLAEIDAAARPDALIGSSTSG  118 (495)
T ss_pred             EEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCC
Confidence            998754321211    222346778776654444

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=97.24  E-value=0.002  Score=65.68  Aligned_cols=106  Identities=20%  Similarity=0.304  Sum_probs=69.5

Q ss_pred             HHHHHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhh-hc---CC-ceeeCHHHH-hcCCc
Q psy4626          61 ESIIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQA-CM---DG-FSVVKLNEV-IRTVD  134 (542)
Q Consensus        61 ~s~~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A-~~---~G-~~v~~l~e~-l~~aD  134 (542)
                      .+++.++.+. .....+++++|+|.|.+|+.++..+...|.+|+++++++.+.... ..   .+ ....+.++. ...+|
T Consensus       102 ~G~~~~l~~~-~~~~~~k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~D  180 (270)
T TIGR00507       102 IGLVSDLERL-IPLRPNQRVLIIGAGGAARAVALPLLKADCNVIIANRTVSKAEELAERFQRYGEIQAFSMDELPLHRVD  180 (270)
T ss_pred             HHHHHHHHhc-CCCccCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhcCceEEechhhhcccCcc
Confidence            3444555442 234568999999999999999999999999999999988765422 11   12 123344433 35799


Q ss_pred             EEEEcCCCc--ccCCH--HHHhccCCCeEEEeccCCC
Q psy4626         135 IVVTATGNK--NVVTR--EHMDKMKNGCVVCNMGHSN  167 (542)
Q Consensus       135 vVi~atG~~--~lI~~--e~l~~mk~GailvnvG~g~  167 (542)
                      +||+||+..  +-+..  -..+.++++.+++.+...+
T Consensus       181 ivInatp~gm~~~~~~~~~~~~~l~~~~~v~D~~y~p  217 (270)
T TIGR00507       181 LIINATSAGMSGNIDEPPVPAEKLKEGMVVYDMVYNP  217 (270)
T ss_pred             EEEECCCCCCCCCCCCCCCCHHHcCCCCEEEEeccCC
Confidence            999998642  11110  0134577888888776554

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []

Probab=97.24  E-value=0.00096  Score=69.72  Aligned_cols=97  Identities=23%  Similarity=0.229  Sum_probs=59.4

Q ss_pred             CcEEEEEcCChhHHHHHHHHH-hCCC-EEEEEeCCchhhhhh----hcCCcee---eCHHHHhcCCcEEEEcCCC-c--c
Q psy4626          77 GKQVVLCGYGEVGKGCCQSLK-GLGC-VIYITEIDPICALQA----CMDGFSV---VKLNEVIRTVDIVVTATGN-K--N  144 (542)
Q Consensus        77 GktVvViG~G~IG~~vA~~l~-~~Ga-~Viv~d~dp~r~~~A----~~~G~~v---~~l~e~l~~aDvVi~atG~-~--~  144 (542)
                      -++++|+|+|..++.-++.+. .++. +|.+|++++.++...    ...|..+   .+.++++++||||++||.. .  +
T Consensus       128 ~~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~v~~~~~~~~av~~aDii~taT~s~~~~P  207 (313)
T PF02423_consen  128 ARTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPERAEAFAARLRDLGVPVVAVDSAEEAVRGADIIVTATPSTTPAP  207 (313)
T ss_dssp             --EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHHHHHHHHHHHCCCTCEEEESSHHHHHTTSSEEEE----SSEEE
T ss_pred             CceEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhHHHHHHHhhccccccceeccchhhhcccCCEEEEccCCCCCCc
Confidence            469999999999988777775 4666 999999999765421    1124443   3678999999999998864 3  4


Q ss_pred             cCCHHHHhccCCCeEEEeccCCC---cccChHhhc
Q psy4626         145 VVTREHMDKMKNGCVVCNMGHSN---TEIDVNSLR  176 (542)
Q Consensus       145 lI~~e~l~~mk~GailvnvG~g~---~eid~~aL~  176 (542)
                      ++..   +.+++|..+..+|...   .|+|.+.+.
T Consensus       208 ~~~~---~~l~~g~hi~~iGs~~~~~~El~~~~~~  239 (313)
T PF02423_consen  208 VFDA---EWLKPGTHINAIGSYTPGMRELDDELLK  239 (313)
T ss_dssp             SB-G---GGS-TT-EEEE-S-SSTTBESB-HHHHH
T ss_pred             cccH---HHcCCCcEEEEecCCCCchhhcCHHHhc
Confidence            6753   4689999999999873   577766554

The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.

>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases

Probab=97.23  E-value=0.0018  Score=66.18  Aligned_cols=89  Identities=21%  Similarity=0.183  Sum_probs=70.3

Q ss_pred             cCcEEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce-eeCHH----HHh-----cCCcEEEEcCCCcc
Q psy4626          76 GGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVKLN----EVI-----RTVDIVVTATGNKN  144 (542)
Q Consensus        76 ~GktVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~-v~~l~----e~l-----~~aDvVi~atG~~~  144 (542)
                      .|++|+|.|. |.+|..+++.++.+|++|++++.++.+...+...|.. +.+..    +.+     .+.|++++++|.. 
T Consensus       146 ~~~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~vld~~g~~-  224 (326)
T cd08289         146 EQGPVLVTGATGGVGSLAVSILAKLGYEVVASTGKADAADYLKKLGAKEVIPREELQEESIKPLEKQRWAGAVDPVGGK-  224 (326)
T ss_pred             CCCEEEEEcCCchHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHcCCCEEEcchhHHHHHHHhhccCCcCEEEECCcHH-
Confidence            4789999999 9999999999999999999999888887766666753 22211    111     3589999999874 


Q ss_pred             cCCHHHHhccCCCeEEEeccCC
Q psy4626         145 VVTREHMDKMKNGCVVCNMGHS  166 (542)
Q Consensus       145 lI~~e~l~~mk~GailvnvG~g  166 (542)
                      .+ .+.++.+++++.++.+|..
T Consensus       225 ~~-~~~~~~l~~~G~~i~~g~~  245 (326)
T cd08289         225 TL-AYLLSTLQYGGSVAVSGLT  245 (326)
T ss_pred             HH-HHHHHHhhcCCEEEEEeec
Confidence            44 4789999999999999854

yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH

>PLN02350 phosphogluconate dehydrogenase (decarboxylating)

Probab=97.20  E-value=0.00081  Score=74.43  Aligned_cols=89  Identities=12%  Similarity=0.132  Sum_probs=68.2

Q ss_pred             EEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhc----CCce----eeCHHHHhc---CCcEEEEcCCCcccCC
Q psy4626          79 QVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACM----DGFS----VVKLNEVIR---TVDIVVTATGNKNVVT  147 (542)
Q Consensus        79 tVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~----~G~~----v~~l~e~l~---~aDvVi~atG~~~lI~  147 (542)
                      +|++||.|.+|..+|+.|...|.+|.|||+++.+......    .|..    ..++++++.   .+|+||.+..+...++
T Consensus         8 ~IG~IGLG~MG~~mA~nL~~~G~~V~V~NRt~~k~~~l~~~~~~~Ga~~~~~a~s~~e~v~~l~~~dvIi~~v~~~~aV~   87 (493)
T PLN02350          8 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGNLPLYGFKDPEDFVLSIQKPRSVIILVKAGAPVD   87 (493)
T ss_pred             CEEEEeeHHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhhhcCCcccccCCCHHHHHhcCCCCCEEEEECCCcHHHH
Confidence            6999999999999999999999999999999987654322    1432    346777765   4999999764433332


Q ss_pred             ---HHHHhccCCCeEEEeccCCC
Q psy4626         148 ---REHMDKMKNGCVVCNMGHSN  167 (542)
Q Consensus       148 ---~e~l~~mk~GailvnvG~g~  167 (542)
                         ...++.+++|.++|+.|...
T Consensus        88 ~Vi~gl~~~l~~G~iiID~sT~~  110 (493)
T PLN02350         88 QTIKALSEYMEPGDCIIDGGNEW  110 (493)
T ss_pred             HHHHHHHhhcCCCCEEEECCCCC
Confidence               24577889999999998764

>PLN02858 fructose-bisphosphate aldolase

Probab=97.20  E-value=0.00087  Score=82.41  Aligned_cols=92  Identities=15%  Similarity=0.098  Sum_probs=74.1

Q ss_pred             cCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCcee-eCHHHHhcCCcEEEEcCCCcccCC------H
Q psy4626          76 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV-VKLNEVIRTVDIVVTATGNKNVVT------R  148 (542)
Q Consensus        76 ~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v-~~l~e~l~~aDvVi~atG~~~lI~------~  148 (542)
                      .+++|++||+|.+|..+|+.|...|.+|.+||+++.+.......|... .++.++.+.+|+||.+..+...+.      .
T Consensus         3 ~~~~IGfIGLG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~Ga~~~~s~~e~a~~advVi~~l~~~~~v~~V~~g~~   82 (1378)
T PLN02858          3 SAGVVGFVGLDSLSFELASSLLRSGFKVQAFEISTPLMEKFCELGGHRCDSPAEAAKDAAALVVVLSHPDQVDDVFFGDE   82 (1378)
T ss_pred             CCCeEEEEchhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEEcCChHHHHHHHhchh
Confidence            467899999999999999999999999999999998877666677764 467888999999999865433332      1


Q ss_pred             HHHhccCCCeEEEeccCCC
Q psy4626         149 EHMDKMKNGCVVCNMGHSN  167 (542)
Q Consensus       149 e~l~~mk~GailvnvG~g~  167 (542)
                      ..++.+++|.++++++..+
T Consensus        83 g~~~~l~~g~iivd~STi~  101 (1378)
T PLN02858         83 GAAKGLQKGAVILIRSTIL  101 (1378)
T ss_pred             hHHhcCCCcCEEEECCCCC
Confidence            2356688999999988764

>PRK12491 pyrroline-5-carboxylate reductase; Reviewed

Probab=97.20  E-value=0.0018  Score=66.44  Aligned_cols=87  Identities=18%  Similarity=0.315  Sum_probs=64.9

Q ss_pred             cEEEEEcCChhHHHHHHHHHhCCC----EEEEEeCCchhhhhhhc-CCceee-CHHHHhcCCcEEEEcCCCcccCCHHHH
Q psy4626          78 KQVVLCGYGEVGKGCCQSLKGLGC----VIYITEIDPICALQACM-DGFSVV-KLNEVIRTVDIVVTATGNKNVVTREHM  151 (542)
Q Consensus        78 ktVvViG~G~IG~~vA~~l~~~Ga----~Viv~d~dp~r~~~A~~-~G~~v~-~l~e~l~~aDvVi~atG~~~lI~~e~l  151 (542)
                      .++++||+|.+|..++..+...|.    +|+++|+++.++..+.. .|.... +..++++.+|+||.|.-. ..+. +.+
T Consensus         3 ~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~~g~~~~~~~~e~~~~aDiIiLavkP-~~~~-~vl   80 (272)
T PRK12491          3 KQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDKYGITITTNNNEVANSADILILSIKP-DLYS-SVI   80 (272)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHhcCcEEeCCcHHHHhhCCEEEEEeCh-HHHH-HHH
Confidence            479999999999999999988774    69999998887665443 576544 566778899999998753 3332 233


Q ss_pred             h----ccCCCeEEEeccCC
Q psy4626         152 D----KMKNGCVVCNMGHS  166 (542)
Q Consensus       152 ~----~mk~GailvnvG~g  166 (542)
                      +    .++++.+++++.-|
T Consensus        81 ~~l~~~~~~~~lvISi~AG   99 (272)
T PRK12491         81 NQIKDQIKNDVIVVTIAAG   99 (272)
T ss_pred             HHHHHhhcCCcEEEEeCCC
Confidence            3    35677888888766

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.19  E-value=0.0012  Score=68.65  Aligned_cols=79  Identities=16%  Similarity=0.235  Sum_probs=59.9

Q ss_pred             cCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCCcEEEEcCCCcccCC-HHHHh--
Q psy4626          76 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNKNVVT-REHMD--  152 (542)
Q Consensus        76 ~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~aDvVi~atG~~~lI~-~e~l~--  152 (542)
                      .+++|+|+|+|.+|..+|+.|...|.+|.+|++++.            .+++++++++|+||.+.....+-. .+.+.  
T Consensus         3 ~~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~------------~~~~~~~~~advvi~~vp~~~~~~v~~~l~~~   70 (308)
T PRK14619          3 QPKTIAILGAGAWGSTLAGLASANGHRVRVWSRRSG------------LSLAAVLADADVIVSAVSMKGVRPVAEQVQAL   70 (308)
T ss_pred             CCCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCC------------CCHHHHHhcCCEEEEECChHHHHHHHHHHHHh
Confidence            357899999999999999999999999999997652            356677889999999875432211 02232  


Q ss_pred             ccCCCeEEEeccCC
Q psy4626         153 KMKNGCVVCNMGHS  166 (542)
Q Consensus       153 ~mk~GailvnvG~g  166 (542)
                      .++++.+++++..+
T Consensus        71 ~~~~~~ivi~~s~g   84 (308)
T PRK14619         71 NLPPETIIVTATKG   84 (308)
T ss_pred             cCCCCcEEEEeCCc
Confidence            36778889887754

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=97.19  E-value=0.0012  Score=68.44  Aligned_cols=86  Identities=16%  Similarity=0.237  Sum_probs=58.9

Q ss_pred             cEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhc-----CC--------------ce-eeCHHHHhcCCcEEE
Q psy4626          78 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACM-----DG--------------FS-VVKLNEVIRTVDIVV  137 (542)
Q Consensus        78 ktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~-----~G--------------~~-v~~l~e~l~~aDvVi  137 (542)
                      ++|+|+|+|.+|..+|..+...|.+|+++|+++.+...+..     .|              .. ..+.+++++++|+||
T Consensus         5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~aDlVi   84 (311)
T PRK06130          5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAAVSGADLVI   84 (311)
T ss_pred             cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHHhccCCEEE
Confidence            57999999999999999999999999999998866543321     11              12 234567788999999


Q ss_pred             EcCCCcccCCHHH---Hh-ccCCCeEEEec
Q psy4626         138 TATGNKNVVTREH---MD-KMKNGCVVCNM  163 (542)
Q Consensus       138 ~atG~~~lI~~e~---l~-~mk~Gailvnv  163 (542)
                      .|.-...-+..+.   +. .+++++++++.
T Consensus        85 ~av~~~~~~~~~v~~~l~~~~~~~~ii~s~  114 (311)
T PRK06130         85 EAVPEKLELKRDVFARLDGLCDPDTIFATN  114 (311)
T ss_pred             EeccCcHHHHHHHHHHHHHhCCCCcEEEEC
Confidence            9975432111122   32 35667776533

>PRK14030 glutamate dehydrogenase; Provisional

Probab=97.19  E-value=0.0019  Score=70.39  Aligned_cols=92  Identities=24%  Similarity=0.346  Sum_probs=65.3

Q ss_pred             CccccCcEEEEEcCChhHHHHHHHHHhCCCEEEE--------Ee---CCchhh---hhhh------------c-CCceee
Q psy4626          72 DVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYI--------TE---IDPICA---LQAC------------M-DGFSVV  124 (542)
Q Consensus        72 ~~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv--------~d---~dp~r~---~~A~------------~-~G~~v~  124 (542)
                      +..+.|++|+|-|+|++|..+|+.|..+|++|++        +|   +|+.+.   .+..            . .|.+.+
T Consensus       223 g~~l~g~~vaIQGfGnVG~~aA~~L~e~GakvVavSD~~G~i~d~~Gld~~~l~~l~~~k~~~~~~~~~~~~~~~ga~~i  302 (445)
T PRK14030        223 GIDIKGKTVAISGFGNVAWGAATKATELGAKVVTISGPDGYIYDPDGISGEKIDYMLELRASGNDIVAPYAEKFPGSTFF  302 (445)
T ss_pred             CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHHHHhcCccHHHHHhcCCCCEEc
Confidence            5678999999999999999999999999999999        77   555431   1110            1 133444


Q ss_pred             CHHHHh-cCCcEEEEcCCCcccCCHHHHhcc-CCCeEEEecc
Q psy4626         125 KLNEVI-RTVDIVVTATGNKNVVTREHMDKM-KNGCVVCNMG  164 (542)
Q Consensus       125 ~l~e~l-~~aDvVi~atG~~~lI~~e~l~~m-k~GailvnvG  164 (542)
                      +.++++ ..|||++-|. ..+.|+.+..+.+ +.++.+|-=|
T Consensus       303 ~~~~~~~~~cDVliPcA-l~n~I~~~na~~l~~~~ak~V~Eg  343 (445)
T PRK14030        303 AGKKPWEQKVDIALPCA-TQNELNGEDADKLIKNGVLCVAEV  343 (445)
T ss_pred             CCccceeccccEEeecc-ccccCCHHHHHHHHHcCCeEEEeC
Confidence            545554 5799999875 4468888777777 4456555433

>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases

Probab=97.18  E-value=0.0036  Score=63.81  Aligned_cols=89  Identities=21%  Similarity=0.210  Sum_probs=69.4

Q ss_pred             cCcEEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce-eeCHH-------HHh--cCCcEEEEcCCCcc
Q psy4626          76 GGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVKLN-------EVI--RTVDIVVTATGNKN  144 (542)
Q Consensus        76 ~GktVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~-v~~l~-------e~l--~~aDvVi~atG~~~  144 (542)
                      .|.+|+|.|. |.+|..+++.++.+|++|++++.++.+...+...|.+ +.+..       ...  .+.|++++++|.. 
T Consensus       146 ~~~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~-  224 (325)
T cd05280         146 EDGPVLVTGATGGVGSIAVAILAKLGYTVVALTGKEEQADYLKSLGASEVLDREDLLDESKKPLLKARWAGAIDTVGGD-  224 (325)
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCcEEEcchhHHHHHHHHhcCCCccEEEECCchH-
Confidence            3579999998 9999999999999999999999888877766666653 22211       111  3689999998874 


Q ss_pred             cCCHHHHhccCCCeEEEeccCC
Q psy4626         145 VVTREHMDKMKNGCVVCNMGHS  166 (542)
Q Consensus       145 lI~~e~l~~mk~GailvnvG~g  166 (542)
                      .+ .+.++.+++++.++..|..
T Consensus       225 ~~-~~~~~~l~~~g~~v~~g~~  245 (325)
T cd05280         225 VL-ANLLKQTKYGGVVASCGNA  245 (325)
T ss_pred             HH-HHHHHhhcCCCEEEEEecC
Confidence            34 4789999999999998854

Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so

>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related

Probab=97.17  E-value=0.0028  Score=64.05  Aligned_cols=92  Identities=22%  Similarity=0.360  Sum_probs=65.4

Q ss_pred             ccccCcEEEEEcCChhHHHHHHHHHhCCCEEEEE--------eCCchhhh---hh-hcC-------------CceeeCHH
Q psy4626          73 VMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYIT--------EIDPICAL---QA-CMD-------------GFSVVKLN  127 (542)
Q Consensus        73 ~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~--------d~dp~r~~---~A-~~~-------------G~~v~~l~  127 (542)
                      ..+.|++|+|-|+|.+|..+|+.|...|++|+++        |.+.....   .. ...             +.+.++.+
T Consensus        28 ~~l~g~~v~IqGfG~VG~~~a~~l~~~Ga~vv~vsD~~G~i~~~~Gld~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~  107 (244)
T PF00208_consen   28 DSLEGKRVAIQGFGNVGSHAARFLAELGAKVVAVSDSSGAIYDPDGLDVEELLRIKEERGSRVDDYPLESPDGAEYIPND  107 (244)
T ss_dssp             HSSTTCEEEEEESSHHHHHHHHHHHHTTEEEEEEEESSEEEEETTEEHHHHHHHHHHHHSSHSTTGTHTCSSTSEEECHH
T ss_pred             CCcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCceEEEcCCCchHHHHHHHHHHhCCcccccccccccceeEeccc
Confidence            3489999999999999999999999999998876        54443221   10 011             12233443


Q ss_pred             -HHh-cCCcEEEEcCCCcccCCHHHHh-ccCCCeEEEeccC
Q psy4626         128 -EVI-RTVDIVVTATGNKNVVTREHMD-KMKNGCVVCNMGH  165 (542)
Q Consensus       128 -e~l-~~aDvVi~atG~~~lI~~e~l~-~mk~GailvnvG~  165 (542)
                       +.+ ..|||++-|. ..+.|+.+... .+++|+.+|--|-
T Consensus       108 ~~il~~~~DiliP~A-~~~~I~~~~~~~~i~~~akiIvegA  147 (244)
T PF00208_consen  108 DEILSVDCDILIPCA-LGNVINEDNAPSLIKSGAKIIVEGA  147 (244)
T ss_dssp             CHGGTSSSSEEEEES-SSTSBSCHHHCHCHHTT-SEEEESS
T ss_pred             cccccccccEEEEcC-CCCeeCHHHHHHHHhccCcEEEeCc
Confidence             555 6899999984 55689988888 8888888776553

They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....

>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family

Probab=97.17  E-value=0.0017  Score=69.14  Aligned_cols=93  Identities=23%  Similarity=0.227  Sum_probs=71.4

Q ss_pred             cccCcEEEEEcCChhHHHHHHHHHhCCC-EEEEEeCCchhhhhhhcCCce-eeC--------HH----HHh--cCCcEEE
Q psy4626          74 MFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMDGFS-VVK--------LN----EVI--RTVDIVV  137 (542)
Q Consensus        74 ~l~GktVvViG~G~IG~~vA~~l~~~Ga-~Viv~d~dp~r~~~A~~~G~~-v~~--------l~----e~l--~~aDvVi  137 (542)
                      ...|.+|+|.|.|.+|..+++.++.+|+ +|++++.++.+...+...|.+ +++        ..    +..  ++.|+|+
T Consensus       201 ~~~g~~VlV~g~g~vG~~ai~lA~~~G~~~vi~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~v~~~~~g~gvDvvl  280 (384)
T cd08265         201 FRPGAYVVVYGAGPIGLAAIALAKAAGASKVIAFEISEERRNLAKEMGADYVFNPTKMRDCLSGEKVMEVTKGWGADIQV  280 (384)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCCEEEcccccccccHHHHHHHhcCCCCCCEEE
Confidence            4579999999999999999999999999 799998888777666666653 221        11    122  4689999


Q ss_pred             EcCCCc-ccCCHHHHhccCCCeEEEeccCCC
Q psy4626         138 TATGNK-NVVTREHMDKMKNGCVVCNMGHSN  167 (542)
Q Consensus       138 ~atG~~-~lI~~e~l~~mk~GailvnvG~g~  167 (542)
                      +++|.. ..+ .+.++.+++++.++++|..+
T Consensus       281 d~~g~~~~~~-~~~~~~l~~~G~~v~~g~~~  310 (384)
T cd08265         281 EAAGAPPATI-PQMEKSIAINGKIVYIGRAA  310 (384)
T ss_pred             ECCCCcHHHH-HHHHHHHHcCCEEEEECCCC
Confidence            998863 344 36788899999999998653

This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi

>PRK12862 malic enzyme; Reviewed

Probab=97.17  E-value=0.0024  Score=74.13  Aligned_cols=120  Identities=23%  Similarity=0.276  Sum_probs=91.5

Q ss_pred             HhHHHHHHHHHHHHH---hhcCccccCcEEEEEcCChhHHHHHHHHHhCCC---EEEEEeCC------------chhhhh
Q psy4626          54 DNLYMCRESIIDSLK---RSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGC---VIYITEID------------PICALQ  115 (542)
Q Consensus        54 d~~~g~~~s~~~ai~---r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga---~Viv~d~d------------p~r~~~  115 (542)
                      |..+||+-.+..++.   +.++..+...+++|+|+|.-|.++|+.+...|+   +++++|..            +.+...
T Consensus       167 DD~~GTa~v~la~l~~a~~~~~~~~~~~~iv~~GaGaag~~~a~~l~~~G~~~~~i~~~D~~G~i~~~r~~~l~~~~~~~  246 (763)
T PRK12862        167 DDQHGTAIIVAAALLNGLKLVGKDIEDVKLVASGAGAAALACLDLLVSLGVKRENIWVTDIKGVVYEGRTELMDPWKARY  246 (763)
T ss_pred             cCcccHHHHHHHHHHHHHHHhCCChhhcEEEEEChhHHHHHHHHHHHHcCCCcccEEEEcCCCeeeCCCCccccHHHHHH
Confidence            555677655544433   335667888999999999999999999999999   79998832            333333


Q ss_pred             hhcCCceeeCHHHHhcCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCCCcccChHhhc
Q psy4626         116 ACMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLR  176 (542)
Q Consensus       116 A~~~G~~v~~l~e~l~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g~~eid~~aL~  176 (542)
                      |...  ...++.++++++|++|-+++ +++++++.++.|.+.-++.-.+....|+..+...
T Consensus       247 a~~~--~~~~l~e~~~~~~v~iG~s~-~g~~~~~~v~~M~~~piifalsNP~~E~~p~~a~  304 (763)
T PRK12862        247 AQKT--DARTLAEVIEGADVFLGLSA-AGVLKPEMVKKMAPRPLIFALANPTPEILPEEAR  304 (763)
T ss_pred             hhhc--ccCCHHHHHcCCCEEEEcCC-CCCCCHHHHHHhccCCEEEeCCCCcccCCHHHHH
Confidence            4432  23578999999999999987 7899999999999888888877766677766443

>PRK06407 ornithine cyclodeaminase; Provisional

Probab=97.16  E-value=0.0018  Score=67.37  Aligned_cols=98  Identities=15%  Similarity=0.131  Sum_probs=72.6

Q ss_pred             cCcEEEEEcCChhHHHHHHHHHh-CCC-EEEEEeCCchhhhh-hh----cCCce---eeCHHHHhcCCcEEEEcCC-Ccc
Q psy4626          76 GGKQVVLCGYGEVGKGCCQSLKG-LGC-VIYITEIDPICALQ-AC----MDGFS---VVKLNEVIRTVDIVVTATG-NKN  144 (542)
Q Consensus        76 ~GktVvViG~G~IG~~vA~~l~~-~Ga-~Viv~d~dp~r~~~-A~----~~G~~---v~~l~e~l~~aDvVi~atG-~~~  144 (542)
                      .-++++|+|+|..|+..++.+.. +.. +|.+|++++.++.. +.    ..|.+   +.+.++++.+||||++||. ..+
T Consensus       116 da~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~~~~~~v~~~~~~~eav~~aDIV~taT~s~~P  195 (301)
T PRK06407        116 NVENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSKEFGVDIRPVDNAEAALRDADTITSITNSDTP  195 (301)
T ss_pred             CCcEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCCCCc
Confidence            36899999999999877777654 455 89999999987543 11    12433   2368899999999999876 446


Q ss_pred             cCCHHHHhccCCCeEEEeccCCC---cccChHhhc
Q psy4626         145 VVTREHMDKMKNGCVVCNMGHSN---TEIDVNSLR  176 (542)
Q Consensus       145 lI~~e~l~~mk~GailvnvG~g~---~eid~~aL~  176 (542)
                      ++..   +.+|+|..+.-+|.+.   .|++.+-+.
T Consensus       196 ~~~~---~~l~pg~hV~aiGs~~p~~~El~~~~l~  227 (301)
T PRK06407        196 IFNR---KYLGDEYHVNLAGSNYPNRREAEHSVLN  227 (301)
T ss_pred             EecH---HHcCCCceEEecCCCCCCcccCCHHHHH
Confidence            6654   3578999999999873   677766554

>PRK12861 malic enzyme; Reviewed

Probab=97.16  E-value=0.0024  Score=73.83  Aligned_cols=120  Identities=21%  Similarity=0.245  Sum_probs=91.8

Q ss_pred             HhHHHHHHHHHHHHH---hhcCccccCcEEEEEcCChhHHHHHHHHHhCCC---EEEEEeC------------Cchhhhh
Q psy4626          54 DNLYMCRESIIDSLK---RSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGC---VIYITEI------------DPICALQ  115 (542)
Q Consensus        54 d~~~g~~~s~~~ai~---r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga---~Viv~d~------------dp~r~~~  115 (542)
                      |..+||+-.+..++.   +.++..+..-++++.|+|.-|.+++..+...|+   +++++|.            ++.+...
T Consensus       163 DD~qGTa~v~lA~llnal~~~gk~l~d~~iv~~GAGaAg~~ia~~l~~~G~~~~~i~~~D~~Gli~~~r~~~l~~~k~~~  242 (764)
T PRK12861        163 DDQHGTAITVSAAFINGLKVVGKSIKEVKVVTSGAGAAALACLDLLVDLGLPVENIWVTDIEGVVYRGRTTLMDPDKERF  242 (764)
T ss_pred             cccchHHHHHHHHHHHHHHHhCCChhHcEEEEECHhHHHHHHHHHHHHcCCChhhEEEEcCCCeeeCCCcccCCHHHHHH
Confidence            556677755544443   345667888999999999999999999999999   7999883            3444444


Q ss_pred             hhcCCceeeCHHHHhcCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCCCcccChHhhc
Q psy4626         116 ACMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLR  176 (542)
Q Consensus       116 A~~~G~~v~~l~e~l~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g~~eid~~aL~  176 (542)
                      |...  ...++.++++++|++|-+++ +++++++.++.|.+.-++.-.+....|+..+...
T Consensus       243 a~~~--~~~~L~eai~~advliG~S~-~g~ft~e~v~~Ma~~PIIFaLsNPtpE~~pe~a~  300 (764)
T PRK12861        243 AQET--DARTLAEVIGGADVFLGLSA-GGVLKAEMLKAMAARPLILALANPTPEIFPELAH  300 (764)
T ss_pred             Hhhc--CCCCHHHHHhcCCEEEEcCC-CCCCCHHHHHHhccCCEEEECCCCCccCCHHHHH
Confidence            4432  23578999999999999986 7899999999998888888777766677666443

>PRK13302 putative L-aspartate dehydrogenase; Provisional

Probab=97.14  E-value=0.00091  Score=68.54  Aligned_cols=88  Identities=22%  Similarity=0.225  Sum_probs=62.9

Q ss_pred             CcEEEEEcCChhHHHHHHHHHh--CCCEEE-EEeCCchhhhh-hhcCCc--eeeCHHHHhcCCcEEEEcCCCcccCCHHH
Q psy4626          77 GKQVVLCGYGEVGKGCCQSLKG--LGCVIY-ITEIDPICALQ-ACMDGF--SVVKLNEVIRTVDIVVTATGNKNVVTREH  150 (542)
Q Consensus        77 GktVvViG~G~IG~~vA~~l~~--~Ga~Vi-v~d~dp~r~~~-A~~~G~--~v~~l~e~l~~aDvVi~atG~~~lI~~e~  150 (542)
                      ..+|+|+|+|.||+.+++.+..  .|+++. ++|+++.+... +...|.  .+.++++++.++|+|++|+++.. ...-.
T Consensus         6 ~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~~g~~~~~~~~eell~~~D~Vvi~tp~~~-h~e~~   84 (271)
T PRK13302          6 ELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWGLRRPPPVVPLDQLATHADIVVEAAPASV-LRAIV   84 (271)
T ss_pred             eeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHhcCCCcccCCHHHHhcCCCEEEECCCcHH-HHHHH
Confidence            4689999999999999999986  478776 78988877543 333342  24578888889999999987642 22223


Q ss_pred             HhccCCCeEEEeccC
Q psy4626         151 MDKMKNGCVVCNMGH  165 (542)
Q Consensus       151 l~~mk~GailvnvG~  165 (542)
                      ...++.|.-++....
T Consensus        85 ~~aL~aGk~Vi~~s~   99 (271)
T PRK13302         85 EPVLAAGKKAIVLSV   99 (271)
T ss_pred             HHHHHcCCcEEEecc
Confidence            555677776665443

>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

Probab=97.14  E-value=0.0027  Score=67.67  Aligned_cols=102  Identities=23%  Similarity=0.295  Sum_probs=74.1

Q ss_pred             HHHHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCCC-EEEEEeCCchhhhhhhcC-CceeeC------HHHHh---
Q psy4626          62 SIIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMD-GFSVVK------LNEVI---  130 (542)
Q Consensus        62 s~~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga-~Viv~d~dp~r~~~A~~~-G~~v~~------l~e~l---  130 (542)
                      ..|+++...  ....|.+|+|.|.|.+|..+++.++..|+ +|++++.++.+...+... +..+++      ..+.+   
T Consensus       172 ta~~~l~~~--~~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~l~~~  249 (386)
T cd08283         172 TGYHAAELA--EVKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLGAETINFEEVDDVVEALREL  249 (386)
T ss_pred             hhHHHHhhc--cCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCcEEEcCCcchHHHHHHHHH
Confidence            345555222  24578999999999999999999999998 699999888887766555 444332      11111   


Q ss_pred             ---cCCcEEEEcCCCc---------------------ccCCHHHHhccCCCeEEEeccCC
Q psy4626         131 ---RTVDIVVTATGNK---------------------NVVTREHMDKMKNGCVVCNMGHS  166 (542)
Q Consensus       131 ---~~aDvVi~atG~~---------------------~lI~~e~l~~mk~GailvnvG~g  166 (542)
                         ...|++++++|..                     ..+ .+.++.+++++.++.+|..
T Consensus       250 ~~~~~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~G~iv~~g~~  308 (386)
T cd08283         250 TGGRGPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDAL-REAIQAVRKGGTVSIIGVY  308 (386)
T ss_pred             cCCCCCCEEEECCCCcccccccccccccccccccCchHHH-HHHHHHhccCCEEEEEcCC
Confidence               2689999998642                     234 4678999999999999854

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T

>PLN02858 fructose-bisphosphate aldolase

Probab=97.14  E-value=0.0013  Score=81.02  Aligned_cols=91  Identities=15%  Similarity=0.131  Sum_probs=72.7

Q ss_pred             CcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce-eeCHHHHhcCCcEEEEcCCCcccCC------HH
Q psy4626          77 GKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVKLNEVIRTVDIVVTATGNKNVVT------RE  149 (542)
Q Consensus        77 GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~-v~~l~e~l~~aDvVi~atG~~~lI~------~e  149 (542)
                      .++|++||+|.+|..+|..|...|.+|++||+++.+.......|.. ..++.++++.+|+||.|..++..+.      ..
T Consensus       324 ~~~IGfIGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~Ga~~~~s~~e~~~~aDvVi~~V~~~~~v~~Vl~g~~g  403 (1378)
T PLN02858        324 VKRIGFIGLGAMGFGMASHLLKSNFSVCGYDVYKPTLVRFENAGGLAGNSPAEVAKDVDVLVIMVANEVQAENVLFGDLG  403 (1378)
T ss_pred             CCeEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEecCChHHHHHHHhchhh
Confidence            4789999999999999999999999999999999876655555654 4567788899999999876443221      23


Q ss_pred             HHhccCCCeEEEeccCCC
Q psy4626         150 HMDKMKNGCVVCNMGHSN  167 (542)
Q Consensus       150 ~l~~mk~GailvnvG~g~  167 (542)
                      .++.+++|.++++++..+
T Consensus       404 ~~~~l~~g~ivVd~STvs  421 (1378)
T PLN02858        404 AVSALPAGASIVLSSTVS  421 (1378)
T ss_pred             HHhcCCCCCEEEECCCCC
Confidence            466789999999988764

>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional

Probab=97.13  E-value=0.00097  Score=71.38  Aligned_cols=78  Identities=17%  Similarity=0.356  Sum_probs=61.0

Q ss_pred             cCcEEEEEc-CChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCCcEEEEcCCCc---ccCCHHHH
Q psy4626          76 GGKQVVLCG-YGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNK---NVVTREHM  151 (542)
Q Consensus        76 ~GktVvViG-~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~aDvVi~atG~~---~lI~~e~l  151 (542)
                      ..++|+|+| .|.+|..+|..++..|..|+++|+++.            .+.++++.++|+||.|+...   .++ .+ +
T Consensus        97 ~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~~------------~~~~~~~~~aDlVilavP~~~~~~~~-~~-l  162 (374)
T PRK11199         97 DLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDDW------------DRAEDILADAGMVIVSVPIHLTEEVI-AR-L  162 (374)
T ss_pred             ccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCcc------------hhHHHHHhcCCEEEEeCcHHHHHHHH-HH-H
Confidence            347999999 999999999999999999999997642            24456778999999997532   223 22 3


Q ss_pred             hccCCCeEEEeccCCC
Q psy4626         152 DKMKNGCVVCNMGHSN  167 (542)
Q Consensus       152 ~~mk~GailvnvG~g~  167 (542)
                      ..+++|++++.+|+-.
T Consensus       163 ~~l~~~~iv~Dv~SvK  178 (374)
T PRK11199        163 PPLPEDCILVDLTSVK  178 (374)
T ss_pred             hCCCCCcEEEECCCcc
Confidence            3378999999998754

>PRK06046 alanine dehydrogenase; Validated

Probab=97.13  E-value=0.0021  Score=67.57  Aligned_cols=96  Identities=23%  Similarity=0.258  Sum_probs=70.8

Q ss_pred             CcEEEEEcCChhHHHHHHHHH-hCCC-EEEEEeCCchhhhhhhc-----CCce---eeCHHHHhcCCcEEEEcCCC-ccc
Q psy4626          77 GKQVVLCGYGEVGKGCCQSLK-GLGC-VIYITEIDPICALQACM-----DGFS---VVKLNEVIRTVDIVVTATGN-KNV  145 (542)
Q Consensus        77 GktVvViG~G~IG~~vA~~l~-~~Ga-~Viv~d~dp~r~~~A~~-----~G~~---v~~l~e~l~~aDvVi~atG~-~~l  145 (542)
                      -++++|+|+|..|+..+..+. ..+. +|.++++++.++.....     .+..   +.+.++++. +|+|++||.+ .++
T Consensus       129 ~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~-aDiVv~aTps~~P~  207 (326)
T PRK06046        129 SKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSSVVGCDVTVAEDIEEACD-CDILVTTTPSRKPV  207 (326)
T ss_pred             CCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhh-CCEEEEecCCCCcE
Confidence            579999999999998888886 4566 78889999877654221     2432   235677777 9999998864 456


Q ss_pred             CCHHHHhccCCCeEEEeccCCC---cccChHhhc
Q psy4626         146 VTREHMDKMKNGCVVCNMGHSN---TEIDVNSLR  176 (542)
Q Consensus       146 I~~e~l~~mk~GailvnvG~g~---~eid~~aL~  176 (542)
                      +..   +.+|+|+.+..+|...   .|+|.+.+.
T Consensus       208 ~~~---~~l~~g~hV~~iGs~~p~~~El~~~~~~  238 (326)
T PRK06046        208 VKA---EWIKEGTHINAIGADAPGKQELDPEILL  238 (326)
T ss_pred             ecH---HHcCCCCEEEecCCCCCccccCCHHHHh
Confidence            654   4579999999999763   678866554

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=97.13  E-value=0.0015  Score=57.24  Aligned_cols=83  Identities=22%  Similarity=0.316  Sum_probs=58.3

Q ss_pred             EEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeC-----H---HH-HhcCCcEEEEcCCCccc--CCH
Q psy4626          80 VVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVK-----L---NE-VIRTVDIVVTATGNKNV--VTR  148 (542)
Q Consensus        80 VvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~-----l---~e-~l~~aDvVi~atG~~~l--I~~  148 (542)
                      ++|+|+|.+|+.+++.|+..+.+|+++|.||.+...+...|+.++.     .   ++ -+.++|.++.++++...  .-.
T Consensus         1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~~d~~n~~~~   80 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEGVEVIYGDATDPEVLERAGIEKADAVVILTDDDEENLLIA   80 (116)
T ss_dssp             EEEES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTSEEEES-TTSHHHHHHTTGGCESEEEEESSSHHHHHHHH
T ss_pred             eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcccccccccchhhhHHhhcCccccCEEEEccCCHHHHHHHH
Confidence            6899999999999999999777999999999988888888877542     1   12 14789988888764321  112


Q ss_pred             HHHhccCCCeEEEe
Q psy4626         149 EHMDKMKNGCVVCN  162 (542)
Q Consensus       149 e~l~~mk~Gailvn  162 (542)
                      ..++.+-+...++-
T Consensus        81 ~~~r~~~~~~~ii~   94 (116)
T PF02254_consen   81 LLARELNPDIRIIA   94 (116)
T ss_dssp             HHHHHHTTTSEEEE
T ss_pred             HHHHHHCCCCeEEE
Confidence            23444445555543

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional

Probab=97.13  E-value=0.0011  Score=76.58  Aligned_cols=90  Identities=18%  Similarity=0.239  Sum_probs=67.8

Q ss_pred             cEEEEEcCChhHHHHHHHHHhCC--CEEEEEeCCchhhhhhhcCCce---eeCHHHHhcCCcEEEEcCCCcccCC--HHH
Q psy4626          78 KQVVLCGYGEVGKGCCQSLKGLG--CVIYITEIDPICALQACMDGFS---VVKLNEVIRTVDIVVTATGNKNVVT--REH  150 (542)
Q Consensus        78 ktVvViG~G~IG~~vA~~l~~~G--a~Viv~d~dp~r~~~A~~~G~~---v~~l~e~l~~aDvVi~atG~~~lI~--~e~  150 (542)
                      ++|+|+|+|.+|..+++.++..|  .+|+++|+++.+...+...|..   ..+.++++.++|+||.|+....+..  .+.
T Consensus         4 ~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvVilavp~~~~~~vl~~l   83 (735)
T PRK14806          4 GRVVVIGLGLIGGSFAKALRERGLAREVVAVDRRAKSLELAVSLGVIDRGEEDLAEAVSGADVIVLAVPVLAMEKVLADL   83 (735)
T ss_pred             cEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEECChhHHHHHHHCCCCCcccCCHHHHhcCCCEEEECCCHHHHHHHHHHH
Confidence            68999999999999999999988  4899999998887666666753   3356677889999999986432211  122


Q ss_pred             HhccCCCeEEEeccCCC
Q psy4626         151 MDKMKNGCVVCNMGHSN  167 (542)
Q Consensus       151 l~~mk~GailvnvG~g~  167 (542)
                      -..++++.++++++.-.
T Consensus        84 ~~~~~~~~ii~d~~svk  100 (735)
T PRK14806         84 KPLLSEHAIVTDVGSTK  100 (735)
T ss_pred             HHhcCCCcEEEEcCCCc
Confidence            23457888888888653

>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional

Probab=97.11  E-value=0.0032  Score=68.69  Aligned_cols=107  Identities=22%  Similarity=0.309  Sum_probs=71.6

Q ss_pred             HHHHHHHHHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCCCEEE-EEeCC----------chhh---hhhh-----
Q psy4626          57 YMCRESIIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIY-ITEID----------PICA---LQAC-----  117 (542)
Q Consensus        57 ~g~~~s~~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Vi-v~d~d----------p~r~---~~A~-----  117 (542)
                      ||+-..+-+++.. .+..+.|+||+|-|+|++|..+|+.|..+|++|+ +.|.+          +.++   .+.+     
T Consensus       218 ~Gv~~~~~~~l~~-~~~~l~Gk~VaVqG~GnVg~~aa~~L~e~GakVVavSD~~G~iy~~~Gld~~~l~~l~~~k~~~~g  296 (454)
T PTZ00079        218 YGLVYFVLEVLKK-LNDSLEGKTVVVSGSGNVAQYAVEKLLQLGAKVLTMSDSDGYIHEPNGFTKEKLAYLMDLKNVKRG  296 (454)
T ss_pred             HHHHHHHHHHHHH-cCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCCcEECCCCCCHHHHHHHHHHHhhcCC
Confidence            3443333333333 3567899999999999999999999999999999 77877          3222   0000     


Q ss_pred             --------cCCceeeCHHHHh-cCCcEEEEcCCCcccCCHHHHhcc-CCCeEEEeccC
Q psy4626         118 --------MDGFSVVKLNEVI-RTVDIVVTATGNKNVVTREHMDKM-KNGCVVCNMGH  165 (542)
Q Consensus       118 --------~~G~~v~~l~e~l-~~aDvVi~atG~~~lI~~e~l~~m-k~GailvnvG~  165 (542)
                              ..|...++.++.+ ..|||++-|. +.+.|+.+....+ +.++.+|--|.
T Consensus       297 ~i~~~~~~~~~a~~~~~~~~~~~~cDI~iPcA-~~n~I~~~~a~~l~~~~ak~V~EgA  353 (454)
T PTZ00079        297 RLKEYAKHSSTAKYVPGKKPWEVPCDIAFPCA-TQNEINLEDAKLLIKNGCKLVAEGA  353 (454)
T ss_pred             cHHhhhhccCCcEEeCCcCcccCCccEEEecc-ccccCCHHHHHHHHHcCCeEEEecC
Confidence                    0133344444444 5799999875 4568887777766 77787775443

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=97.11  E-value=0.0016  Score=70.75  Aligned_cols=88  Identities=16%  Similarity=0.157  Sum_probs=63.0

Q ss_pred             cEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCc-ee--eCHHHH---------------hcCCcEEEEc
Q psy4626          78 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGF-SV--VKLNEV---------------IRTVDIVVTA  139 (542)
Q Consensus        78 ktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~-~v--~~l~e~---------------l~~aDvVi~a  139 (542)
                      ++|+|+|.|.+|..+|..|+..|.+|+++|+++.+... ...|. +.  ..++++               ++.+|+||.|
T Consensus         4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~v~~-l~~g~~~~~e~~l~~~l~~~~~~g~l~~~~~~~~aDvvii~   82 (415)
T PRK11064          4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDT-INRGEIHIVEPDLDMVVKTAVEGGYLRATTTPEPADAFLIA   82 (415)
T ss_pred             cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHHHHH-HHCCCCCcCCCCHHHHHHHHhhcCceeeecccccCCEEEEE
Confidence            58999999999999999999999999999999987654 23232 11  112222               2479999999


Q ss_pred             CCCc---------ccCC---HHHHhccCCCeEEEeccCC
Q psy4626         140 TGNK---------NVVT---REHMDKMKNGCVVCNMGHS  166 (542)
Q Consensus       140 tG~~---------~lI~---~e~l~~mk~GailvnvG~g  166 (542)
                      .+++         ..+.   ......+++|.+++..+..
T Consensus        83 vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv  121 (415)
T PRK11064         83 VPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTS  121 (415)
T ss_pred             cCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCC
Confidence            8774         1121   2345567999999887664

>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins

Probab=97.10  E-value=0.0033  Score=64.62  Aligned_cols=102  Identities=16%  Similarity=0.203  Sum_probs=74.9

Q ss_pred             HHHHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce-eeCHH------HHhcCCc
Q psy4626          62 SIIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVKLN------EVIRTVD  134 (542)
Q Consensus        62 s~~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~-v~~l~------e~l~~aD  134 (542)
                      +.|+++.+.  ....|.+|+|.|.|.+|+.+++.++.+|++|++++.++.+...+...|.. +.+..      ......|
T Consensus       150 ta~~~l~~~--~~~~~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d  227 (330)
T cd08245         150 TVYSALRDA--GPRPGERVAVLGIGGLGHLAVQYARAMGFETVAITRSPDKRELARKLGADEVVDSGAELDEQAAAGGAD  227 (330)
T ss_pred             HHHHHHHhh--CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhCCcEEeccCCcchHHhccCCCC
Confidence            345555442  24578999999999999999999999999999999888776655555543 22211      1124689


Q ss_pred             EEEEcCCCcccCCHHHHhccCCCeEEEeccCC
Q psy4626         135 IVVTATGNKNVVTREHMDKMKNGCVVCNMGHS  166 (542)
Q Consensus       135 vVi~atG~~~lI~~e~l~~mk~GailvnvG~g  166 (542)
                      +++++.+....+ .+.++.|++++.++++|..
T Consensus       228 ~vi~~~~~~~~~-~~~~~~l~~~G~~i~~~~~  258 (330)
T cd08245         228 VILVTVVSGAAA-EAALGGLRRGGRIVLVGLP  258 (330)
T ss_pred             EEEECCCcHHHH-HHHHHhcccCCEEEEECCC
Confidence            999997765555 4789999999999998853

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an

>KOG0067|consensus

Probab=97.10  E-value=0.00045  Score=72.59  Aligned_cols=92  Identities=20%  Similarity=0.344  Sum_probs=73.7

Q ss_pred             cccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhh-hhhcCCce-eeCHHHHhcCCcEEEEcC----CCcccCC
Q psy4626          74 MFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICAL-QACMDGFS-VVKLNEVIRTVDIVVTAT----GNKNVVT  147 (542)
Q Consensus        74 ~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~-~A~~~G~~-v~~l~e~l~~aDvVi~at----G~~~lI~  147 (542)
                      ...|.+++++|+|++|+.++.++++||..|+-||  |+-.. .-...|.+ +-++++.+-++|.+....    -+.++++
T Consensus       175 ~~~G~~~g~~g~gr~g~av~~~A~afg~~~ifyd--p~~~~g~~~~lg~~rVytlqd~~~~sd~~S~hc~~~~~~h~lin  252 (435)
T KOG0067|consen  175 RIRGPTLGLIGFGRTGQAVALRAKAFGFVVIFYD--PYLIDGIDKSLGLQRVYTLQDLLYQSDCVSLHCNLNEHNHELIN  252 (435)
T ss_pred             cccccceeeeccccccceehhhhhcccceeeeec--chhhhhhhhhcccceecccchhhhhccceeeecccCcccccccc
Confidence            4679999999999999999999999999999997  54322 12334554 446788888889888843    3678888


Q ss_pred             HHHHhccCCCeEEEeccCCC
Q psy4626         148 REHMDKMKNGCVVCNMGHSN  167 (542)
Q Consensus       148 ~e~l~~mk~GailvnvG~g~  167 (542)
                      .-.+..|+.|+.++|++++.
T Consensus       253 ~~tikqm~qGaflvnta~gg  272 (435)
T KOG0067|consen  253 DFTIKQMRQGAFLVNTARGG  272 (435)
T ss_pred             cccceeecccceEeeecccc
Confidence            77789999999999999985

>cd08252 AL_MDR Arginate lyase and other MDR family members

Probab=97.09  E-value=0.0055  Score=62.96  Aligned_cols=89  Identities=21%  Similarity=0.237  Sum_probs=68.9

Q ss_pred             CcEEEEEc-CChhHHHHHHHHHhCC-CEEEEEeCCchhhhhhhcCCce-eeC----HHHHh-----cCCcEEEEcCCCcc
Q psy4626          77 GKQVVLCG-YGEVGKGCCQSLKGLG-CVIYITEIDPICALQACMDGFS-VVK----LNEVI-----RTVDIVVTATGNKN  144 (542)
Q Consensus        77 GktVvViG-~G~IG~~vA~~l~~~G-a~Viv~d~dp~r~~~A~~~G~~-v~~----l~e~l-----~~aDvVi~atG~~~  144 (542)
                      |.+|+|.| .|.+|+.+++.++..| ++|++++.++.+...+...|.. +++    ..+.+     ++.|++++++|...
T Consensus       150 g~~vlV~g~~g~vg~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~d~vl~~~~~~~  229 (336)
T cd08252         150 GKTLLIIGGAGGVGSIAIQLAKQLTGLTVIATASRPESIAWVKELGADHVINHHQDLAEQLEALGIEPVDYIFCLTDTDQ  229 (336)
T ss_pred             CCEEEEEcCCchHHHHHHHHHHHcCCcEEEEEcCChhhHHHHHhcCCcEEEeCCccHHHHHHhhCCCCCCEEEEccCcHH
Confidence            89999999 5999999999999999 9999998888776666556653 221    21111     46899999988644


Q ss_pred             cCCHHHHhccCCCeEEEeccCC
Q psy4626         145 VVTREHMDKMKNGCVVCNMGHS  166 (542)
Q Consensus       145 lI~~e~l~~mk~GailvnvG~g  166 (542)
                      .+ ...++.+++++.++..|..
T Consensus       230 ~~-~~~~~~l~~~g~~v~~g~~  250 (336)
T cd08252         230 HW-DAMAELIAPQGHICLIVDP  250 (336)
T ss_pred             HH-HHHHHHhcCCCEEEEecCC
Confidence            55 3689999999999998854

This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, whil

>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase

Probab=97.07  E-value=0.0027  Score=66.12  Aligned_cols=102  Identities=24%  Similarity=0.271  Sum_probs=74.8

Q ss_pred             HHHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCCC-EEEEEeCCchhhhhhhcCCce-eeC-----HHH----Hhc
Q psy4626          63 IIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMDGFS-VVK-----LNE----VIR  131 (542)
Q Consensus        63 ~~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga-~Viv~d~dp~r~~~A~~~G~~-v~~-----l~e----~l~  131 (542)
                      .|+++.+.. ....|++|+|.|.|.+|..+++.++.+|+ +|++++.++.+...+...|.. +++     ..+    ...
T Consensus       163 A~~~~~~~~-~~~~~~~vlI~g~g~vg~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  241 (350)
T cd08240         163 AYSAVKKLM-PLVADEPVVIIGAGGLGLMALALLKALGPANIIVVDIDEAKLEAAKAAGADVVVNGSDPDAAKRIIKAAG  241 (350)
T ss_pred             HHHHHHhcc-cCCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHhCCcEEecCCCccHHHHHHHHhC
Confidence            345554432 22378999999999999999999999999 788998888777666556643 222     111    122


Q ss_pred             -CCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCC
Q psy4626         132 -TVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHS  166 (542)
Q Consensus       132 -~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g  166 (542)
                       +.|++++++|....+. +.++.|++++.++.+|..
T Consensus       242 ~~~d~vid~~g~~~~~~-~~~~~l~~~g~~v~~g~~  276 (350)
T cd08240         242 GGVDAVIDFVNNSATAS-LAFDILAKGGKLVLVGLF  276 (350)
T ss_pred             CCCcEEEECCCCHHHHH-HHHHHhhcCCeEEEECCC
Confidence             5899999998655554 789999999999988754

6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy

>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=97.07  E-value=0.0026  Score=65.88  Aligned_cols=89  Identities=20%  Similarity=0.285  Sum_probs=67.6

Q ss_pred             cccCcEEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceee-C-----HHH--Hh--cCCcEEEEcCCC
Q psy4626          74 MFGGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVV-K-----LNE--VI--RTVDIVVTATGN  142 (542)
Q Consensus        74 ~l~GktVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~-~-----l~e--~l--~~aDvVi~atG~  142 (542)
                      ...|++|+|.|. |.+|..+++.++.+|++|+++..+. +...+...|...+ +     ..+  ..  ++.|+++++.|.
T Consensus       175 ~~~g~~vlI~g~~g~ig~~~~~~a~~~g~~vi~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~g~  253 (350)
T cd08274         175 VGAGETVLVTGASGGVGSALVQLAKRRGAIVIAVAGAA-KEEAVRALGADTVILRDAPLLADAKALGGEPVDVVADVVGG  253 (350)
T ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCch-hhHHHHhcCCeEEEeCCCccHHHHHhhCCCCCcEEEecCCH
Confidence            457999999999 9999999999999999998887554 5555555665321 1     111  11  469999999987


Q ss_pred             cccCCHHHHhccCCCeEEEeccC
Q psy4626         143 KNVVTREHMDKMKNGCVVCNMGH  165 (542)
Q Consensus       143 ~~lI~~e~l~~mk~GailvnvG~  165 (542)
                      . .+ .+.++.+++++.++++|.
T Consensus       254 ~-~~-~~~~~~l~~~G~~v~~g~  274 (350)
T cd08274         254 P-LF-PDLLRLLRPGGRYVTAGA  274 (350)
T ss_pred             H-HH-HHHHHHhccCCEEEEecc
Confidence            4 34 368999999999998874

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.07  E-value=0.0016  Score=72.00  Aligned_cols=70  Identities=23%  Similarity=0.339  Sum_probs=55.5

Q ss_pred             ccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeC---HHHHhcCCcEEEEcCCCcc
Q psy4626          75 FGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVK---LNEVIRTVDIVVTATGNKN  144 (542)
Q Consensus        75 l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~---l~e~l~~aDvVi~atG~~~  144 (542)
                      ..|++|+|+|+|++|+.+++.|+..|++|+++|.++.+...+...|+.+..   ..+.+.++|+||.++|-+.
T Consensus        10 ~~~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~~~~l~~~D~VV~SpGi~~   82 (488)
T PRK03369         10 LPGAPVLVAGAGVTGRAVLAALTRFGARPTVCDDDPDALRPHAERGVATVSTSDAVQQIADYALVVTSPGFRP   82 (488)
T ss_pred             cCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHhCCCEEEcCcchHhHhhcCCEEEECCCCCC
Confidence            478999999999999999999999999999999776654444455765542   2345678999999988643

>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2

Probab=97.06  E-value=0.0059  Score=62.28  Aligned_cols=91  Identities=16%  Similarity=0.203  Sum_probs=67.6

Q ss_pred             cccCcEEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce-eeC-----HH----HHh--cCCcEEEEcC
Q psy4626          74 MFGGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVK-----LN----EVI--RTVDIVVTAT  140 (542)
Q Consensus        74 ~l~GktVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~-v~~-----l~----e~l--~~aDvVi~at  140 (542)
                      ...|.+|+|.|. |.+|..+++.++.+|++|+++..++.+.......|.. +.+     ..    +..  ++.|+|++++
T Consensus       137 ~~~g~~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~  216 (324)
T cd08292         137 VKPGQWLIQNAAGGAVGKLVAMLAAARGINVINLVRRDAGVAELRALGIGPVVSTEQPGWQDKVREAAGGAPISVALDSV  216 (324)
T ss_pred             CCCCCEEEEcccccHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHhcCCCEEEcCCCchHHHHHHHHhCCCCCcEEEECC
Confidence            457999999986 9999999999999999998886555554444445653 221     11    122  3699999999


Q ss_pred             CCcccCCHHHHhccCCCeEEEeccCC
Q psy4626         141 GNKNVVTREHMDKMKNGCVVCNMGHS  166 (542)
Q Consensus       141 G~~~lI~~e~l~~mk~GailvnvG~g  166 (542)
                      |.. .+ .+.++.+++++.++.+|..
T Consensus       217 g~~-~~-~~~~~~l~~~g~~v~~g~~  240 (324)
T cd08292         217 GGK-LA-GELLSLLGEGGTLVSFGSM  240 (324)
T ss_pred             CCh-hH-HHHHHhhcCCcEEEEEecC
Confidence            874 44 4789999999999998853

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=97.06  E-value=0.0011  Score=62.10  Aligned_cols=87  Identities=17%  Similarity=0.260  Sum_probs=58.3

Q ss_pred             EEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhc--------CCce-------eeCHHHHhcCCcEEEEcCCCc
Q psy4626          79 QVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACM--------DGFS-------VVKLNEVIRTVDIVVTATGNK  143 (542)
Q Consensus        79 tVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~--------~G~~-------v~~l~e~l~~aDvVi~atG~~  143 (542)
                      +|.|+|+|..|..+|..+...|-+|.+|.+++.....-..        .+..       ..+++++++++|+|+.++-+.
T Consensus         1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~ad~IiiavPs~   80 (157)
T PF01210_consen    1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEALEDADIIIIAVPSQ   80 (157)
T ss_dssp             EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT-SEEEE-S-GG
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhCcccEEEecccHH
Confidence            5899999999999999999999999999998754321111        1111       235778899999999987543


Q ss_pred             c---cCCHHHHhccCCCeEEEeccCC
Q psy4626         144 N---VVTREHMDKMKNGCVVCNMGHS  166 (542)
Q Consensus       144 ~---lI~~e~l~~mk~GailvnvG~g  166 (542)
                      .   ++ .+....++++..++++..|
T Consensus        81 ~~~~~~-~~l~~~l~~~~~ii~~~KG  105 (157)
T PF01210_consen   81 AHREVL-EQLAPYLKKGQIIISATKG  105 (157)
T ss_dssp             GHHHHH-HHHTTTSHTT-EEEETS-S
T ss_pred             HHHHHH-HHHhhccCCCCEEEEecCC
Confidence            2   22 2333445678888887755

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type

Probab=97.06  E-value=0.0042  Score=63.96  Aligned_cols=82  Identities=13%  Similarity=0.195  Sum_probs=57.7

Q ss_pred             HHHHHHHHhhcC-ccccCcEEEEEcCChhHHHHHHHHHhCCC-EEEEEeCCchhhhhh-hcCC----ceeeC----HHHH
Q psy4626          61 ESIIDSLKRSTD-VMFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQA-CMDG----FSVVK----LNEV  129 (542)
Q Consensus        61 ~s~~~ai~r~~~-~~l~GktVvViG~G~IG~~vA~~l~~~Ga-~Viv~d~dp~r~~~A-~~~G----~~v~~----l~e~  129 (542)
                      .+++.++++... ..+.|++|+|+|+|-.|+.++..|...|+ +|+++++++.|+..- ...+    .....    +.+.
T Consensus       108 ~G~~~~l~~~~~~~~~~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~~~~~~~~~~~~~~~~~~~~~  187 (282)
T TIGR01809       108 DGIAGALANIGKFEPLAGFRGLVIGAGGTSRAAVYALASLGVTDITVINRNPDKLSRLVDLGVQVGVITRLEGDSGGLAI  187 (282)
T ss_pred             HHHHHHHHhhCCccccCCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhhhcCcceeccchhhhhhc
Confidence            445566655321 14679999999999999999999999998 899999998876432 2211    11111    1244


Q ss_pred             hcCCcEEEEcCCC
Q psy4626         130 IRTVDIVVTATGN  142 (542)
Q Consensus       130 l~~aDvVi~atG~  142 (542)
                      +.++|+||.||..
T Consensus       188 ~~~~DiVInaTp~  200 (282)
T TIGR01809       188 EKAAEVLVSTVPA  200 (282)
T ss_pred             ccCCCEEEECCCC
Confidence            5789999999854

This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.

>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family

Probab=97.05  E-value=0.0033  Score=65.54  Aligned_cols=93  Identities=18%  Similarity=0.183  Sum_probs=70.6

Q ss_pred             cccCcEEEEEcCChhHHHHHHHHHhCCCE-EEEEeCCchhhhhhhcCCce-eeC-----HHH----Hh--cCCcEEEEcC
Q psy4626          74 MFGGKQVVLCGYGEVGKGCCQSLKGLGCV-IYITEIDPICALQACMDGFS-VVK-----LNE----VI--RTVDIVVTAT  140 (542)
Q Consensus        74 ~l~GktVvViG~G~IG~~vA~~l~~~Ga~-Viv~d~dp~r~~~A~~~G~~-v~~-----l~e----~l--~~aDvVi~at  140 (542)
                      ...|++|+|.|.|.+|..+++.++.+|++ |++++.++.+...+...|.+ +++     ..+    ..  .++|++++++
T Consensus       172 ~~~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~vdvvld~~  251 (350)
T cd08256         172 IKFDDVVVLAGAGPLGLGMIGAARLKNPKKLIVLDLKDERLALARKFGADVVLNPPEVDVVEKIKELTGGYGCDIYIEAT  251 (350)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCHHHHHHHHHcCCcEEecCCCcCHHHHHHHHhCCCCCCEEEECC
Confidence            45799999999999999999999999985 67788888777666666654 222     111    22  3589999998


Q ss_pred             CCcccCCHHHHhccCCCeEEEeccCCC
Q psy4626         141 GNKNVVTREHMDKMKNGCVVCNMGHSN  167 (542)
Q Consensus       141 G~~~lI~~e~l~~mk~GailvnvG~g~  167 (542)
                      |....+. +.++.+++++.++++|...
T Consensus       252 g~~~~~~-~~~~~l~~~G~~v~~g~~~  277 (350)
T cd08256         252 GHPSAVE-QGLNMIRKLGRFVEFSVFG  277 (350)
T ss_pred             CChHHHH-HHHHHhhcCCEEEEEccCC
Confidence            8644554 6799999999999988543

This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,

>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II

Probab=97.04  E-value=0.0021  Score=67.69  Aligned_cols=83  Identities=24%  Similarity=0.295  Sum_probs=60.6

Q ss_pred             EEEEcCChhHHHHHHHHHhC-CCEEEE-EeCCchhhh-hhhcCCcee-------------------eCHHHHhcCCcEEE
Q psy4626          80 VVLCGYGEVGKGCCQSLKGL-GCVIYI-TEIDPICAL-QACMDGFSV-------------------VKLNEVIRTVDIVV  137 (542)
Q Consensus        80 VvViG~G~IG~~vA~~l~~~-Ga~Viv-~d~dp~r~~-~A~~~G~~v-------------------~~l~e~l~~aDvVi  137 (542)
                      |+|+|||.||+.+++.+... +++|+. .|.+|.+.. .|...|++.                   -++++++.++|+|+
T Consensus         1 VaInG~GrIGr~varav~~~~d~elVaVnD~~~~~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~~eeLl~~vDiVv   80 (333)
T TIGR01546         1 VGVNGYGTIGKRVADAVTKQDDMKLVGVTKTSPDFEAYRAKELGIPVYAASEEFIPRFEEAGIEVAGTLEDLLEKVDIVV   80 (333)
T ss_pred             CEEECCcHHHHHHHHHHhhCCCcEEEEEecCChHHHHHHHHHhCCCEEeecCCcceEeccCceEecCCHHHHhhcCCEEE
Confidence            68999999999999997643 576554 677776432 233334332                   13667788999999


Q ss_pred             EcCC-CcccCCHHHHhccCCCeEEEe
Q psy4626         138 TATG-NKNVVTREHMDKMKNGCVVCN  162 (542)
Q Consensus       138 ~atG-~~~lI~~e~l~~mk~Gailvn  162 (542)
                      +||+ ..+..+++.+..++.+++++.
T Consensus        81 e~Tp~~~~~~na~~~~~~GakaVl~~  106 (333)
T TIGR01546        81 DATPGGIGAKNKPLYEKAGVKAIFQG  106 (333)
T ss_pred             ECCCCCCChhhHHHHHhCCcCEEEEC
Confidence            9987 567788888999999887765

All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.

>PTZ00142 6-phosphogluconate dehydrogenase; Provisional

Probab=97.04  E-value=0.0017  Score=71.56  Aligned_cols=89  Identities=11%  Similarity=0.135  Sum_probs=67.0

Q ss_pred             cEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhc----CCce---eeCHHHHhc---CCcEEEEcCC----Cc
Q psy4626          78 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACM----DGFS---VVKLNEVIR---TVDIVVTATG----NK  143 (542)
Q Consensus        78 ktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~----~G~~---v~~l~e~l~---~aDvVi~atG----~~  143 (542)
                      .+|+|+|.|.+|..+|+.|...|.+|.+||+++.+......    .|+.   ..++++++.   .+|+|+.+.-    ..
T Consensus         2 ~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~i~~~~s~~e~v~~l~~~d~Iil~v~~~~~v~   81 (470)
T PTZ00142          2 SDIGLIGLAVMGQNLALNIASRGFKISVYNRTYEKTEEFVKKAKEGNTRVKGYHTLEELVNSLKKPRKVILLIKAGEAVD   81 (470)
T ss_pred             CEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhhhhcCCcceecCCHHHHHhcCCCCCEEEEEeCChHHHH
Confidence            37999999999999999999999999999999987543322    2432   346777764   5898877632    22


Q ss_pred             ccCCHHHHhccCCCeEEEeccCCC
Q psy4626         144 NVVTREHMDKMKNGCVVCNMGHSN  167 (542)
Q Consensus       144 ~lI~~e~l~~mk~GailvnvG~g~  167 (542)
                      .++ .+.+..+++|.++++.|.+.
T Consensus        82 ~vi-~~l~~~L~~g~iIID~gn~~  104 (470)
T PTZ00142         82 ETI-DNLLPLLEKGDIIIDGGNEW  104 (470)
T ss_pred             HHH-HHHHhhCCCCCEEEECCCCC
Confidence            344 35667789999999999774

>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

Probab=97.03  E-value=0.005  Score=63.15  Aligned_cols=102  Identities=18%  Similarity=0.249  Sum_probs=74.8

Q ss_pred             HHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce-eeC-----HHH---Hh--cC
Q psy4626          64 IDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVK-----LNE---VI--RT  132 (542)
Q Consensus        64 ~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~-v~~-----l~e---~l--~~  132 (542)
                      ++++.+.. ....|.+|+|.|.|.+|..+++.++.+|++|++++.++.+...+...|.. +.+     ..+   ..  +.
T Consensus       154 ~~~l~~~~-~~~~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  232 (338)
T cd08254         154 YHAVVRAG-EVKPGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAKELGADEVLNSLDDSPKDKKAAGLGGG  232 (338)
T ss_pred             HHHHHhcc-CCCCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhCCCEEEcCCCcCHHHHHHHhcCCC
Confidence            44443332 24578999999999999999999999999999999888776655555543 111     111   11  46


Q ss_pred             CcEEEEcCCCcccCCHHHHhccCCCeEEEeccCCC
Q psy4626         133 VDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSN  167 (542)
Q Consensus       133 aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g~  167 (542)
                      .|+++++.|....+ .+.++.+++++.++..|..+
T Consensus       233 ~D~vid~~g~~~~~-~~~~~~l~~~G~~v~~g~~~  266 (338)
T cd08254         233 FDVIFDFVGTQPTF-EDAQKAVKPGGRIVVVGLGR  266 (338)
T ss_pred             ceEEEECCCCHHHH-HHHHHHhhcCCEEEEECCCC
Confidence            89999998865555 36889999999999988643

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio

>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]

Probab=97.03  E-value=0.0033  Score=64.31  Aligned_cols=87  Identities=20%  Similarity=0.236  Sum_probs=68.7

Q ss_pred             cEEEEEcCChhHHHHHHHHHhCC----CEEEEEeCCchhhh-hhhcCCce-eeCHHHHhcCCcEEEEcCCCcccCCHHHH
Q psy4626          78 KQVVLCGYGEVGKGCCQSLKGLG----CVIYITEIDPICAL-QACMDGFS-VVKLNEVIRTVDIVVTATGNKNVVTREHM  151 (542)
Q Consensus        78 ktVvViG~G~IG~~vA~~l~~~G----a~Viv~d~dp~r~~-~A~~~G~~-v~~l~e~l~~aDvVi~atG~~~lI~~e~l  151 (542)
                      .+++++|+|++|..++.-+...|    .+|+++++++.++. .+...|.. ..+.+++...+|+||.|. .|..+ .+.+
T Consensus         2 ~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~~l~~~~g~~~~~~~~~~~~~advv~Lav-KPq~~-~~vl   79 (266)
T COG0345           2 MKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAAEYGVVTTTDNQEAVEEADVVFLAV-KPQDL-EEVL   79 (266)
T ss_pred             ceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHHHHHHHcCCcccCcHHHHHhhCCEEEEEe-ChHhH-HHHH
Confidence            47999999999999999999999    48999999998775 55566665 344567788999999996 33344 4677


Q ss_pred             hccC---CCeEEEeccCC
Q psy4626         152 DKMK---NGCVVCNMGHS  166 (542)
Q Consensus       152 ~~mk---~GailvnvG~g  166 (542)
                      +.++   ++..++++.-|
T Consensus        80 ~~l~~~~~~~lvISiaAG   97 (266)
T COG0345          80 SKLKPLTKDKLVISIAAG   97 (266)
T ss_pred             HHhhcccCCCEEEEEeCC
Confidence            7776   68888888766

>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like

Probab=97.02  E-value=0.0029  Score=65.61  Aligned_cols=92  Identities=23%  Similarity=0.256  Sum_probs=70.6

Q ss_pred             cccCcEEEEEcCChhHHHHHHHHHhCC-CEEEEEeCCchhhhhhhcCCce-eeCH---------HHHh--cCCcEEEEcC
Q psy4626          74 MFGGKQVVLCGYGEVGKGCCQSLKGLG-CVIYITEIDPICALQACMDGFS-VVKL---------NEVI--RTVDIVVTAT  140 (542)
Q Consensus        74 ~l~GktVvViG~G~IG~~vA~~l~~~G-a~Viv~d~dp~r~~~A~~~G~~-v~~l---------~e~l--~~aDvVi~at  140 (542)
                      ...|.+|+|.|.|.+|..+++.++.+| .+|++++.++.+...+...|.+ +++.         .+..  ...|++++++
T Consensus       164 ~~~g~~vlI~g~g~~g~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~i~~~~~~~~~d~vld~~  243 (345)
T cd08286         164 VKPGDTVAIVGAGPVGLAALLTAQLYSPSKIIMVDLDDNRLEVAKKLGATHTVNSAKGDAIEQVLELTDGRGVDVVIEAV  243 (345)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCCceeccccccHHHHHHHHhCCCCCCEEEECC
Confidence            357999999999999999999999999 7999998888776655556653 2221         1122  3699999998


Q ss_pred             CCcccCCHHHHhccCCCeEEEeccCC
Q psy4626         141 GNKNVVTREHMDKMKNGCVVCNMGHS  166 (542)
Q Consensus       141 G~~~lI~~e~l~~mk~GailvnvG~g  166 (542)
                      |....+ ...++.+++++.+++.|..
T Consensus       244 g~~~~~-~~~~~~l~~~g~~v~~g~~  268 (345)
T cd08286         244 GIPATF-ELCQELVAPGGHIANVGVH  268 (345)
T ss_pred             CCHHHH-HHHHHhccCCcEEEEeccc
Confidence            865555 3667899999999998854

This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (

>cd08234 threonine_DH_like L-threonine dehydrogenase

Probab=97.02  E-value=0.0015  Score=67.17  Aligned_cols=93  Identities=23%  Similarity=0.230  Sum_probs=71.0

Q ss_pred             cccCcEEEEEcCChhHHHHHHHHHhCCCE-EEEEeCCchhhhhhhcCCce-eeCHH-------HH--hcCCcEEEEcCCC
Q psy4626          74 MFGGKQVVLCGYGEVGKGCCQSLKGLGCV-IYITEIDPICALQACMDGFS-VVKLN-------EV--IRTVDIVVTATGN  142 (542)
Q Consensus        74 ~l~GktVvViG~G~IG~~vA~~l~~~Ga~-Viv~d~dp~r~~~A~~~G~~-v~~l~-------e~--l~~aDvVi~atG~  142 (542)
                      ...|.+++|.|.|.+|+.+++.++..|++ |++++.++.+...+...|.. +++..       ..  -+++|+++++.|.
T Consensus       157 ~~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~vd~v~~~~~~  236 (334)
T cd08234         157 IKPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKLGATETVDPSREDPEAQKEDNPYGFDVVIEATGV  236 (334)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCeEEecCCCCCHHHHHHhcCCCCcEEEECCCC
Confidence            45789999999999999999999999997 88888888776655555543 22211       11  1568999999876


Q ss_pred             cccCCHHHHhccCCCeEEEeccCCC
Q psy4626         143 KNVVTREHMDKMKNGCVVCNMGHSN  167 (542)
Q Consensus       143 ~~lI~~e~l~~mk~GailvnvG~g~  167 (542)
                      ...+ .+.++.|++++.++.+|..+
T Consensus       237 ~~~~-~~~~~~l~~~G~~v~~g~~~  260 (334)
T cd08234         237 PKTL-EQAIEYARRGGTVLVFGVYA  260 (334)
T ss_pred             hHHH-HHHHHHHhcCCEEEEEecCC
Confidence            5555 46789999999999988654

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>PRK11880 pyrroline-5-carboxylate reductase; Reviewed

Probab=97.02  E-value=0.0016  Score=65.78  Aligned_cols=87  Identities=18%  Similarity=0.241  Sum_probs=61.3

Q ss_pred             cEEEEEcCChhHHHHHHHHHhCC---CEEEEEeCCchhhhhhhc-CCcee-eCHHHHhcCCcEEEEcCCCcccCCHHHHh
Q psy4626          78 KQVVLCGYGEVGKGCCQSLKGLG---CVIYITEIDPICALQACM-DGFSV-VKLNEVIRTVDIVVTATGNKNVVTREHMD  152 (542)
Q Consensus        78 ktVvViG~G~IG~~vA~~l~~~G---a~Viv~d~dp~r~~~A~~-~G~~v-~~l~e~l~~aDvVi~atG~~~lI~~e~l~  152 (542)
                      .+++|||+|.+|..++..+...|   .+|.++++++.+...... .|..+ .+.++++..+|+||.|+.... + .+.++
T Consensus         3 m~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~~~~~~~~~~~g~~~~~~~~~~~~~advVil~v~~~~-~-~~v~~   80 (267)
T PRK11880          3 KKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEEYGVRAATDNQEAAQEADVVVLAVKPQV-M-EEVLS   80 (267)
T ss_pred             CEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCHHHHHHHHHhcCCeecCChHHHHhcCCEEEEEcCHHH-H-HHHHH
Confidence            47999999999999999999888   689999998876654443 36554 345667889999999975433 3 24444


Q ss_pred             ccCC--CeEEEeccCC
Q psy4626         153 KMKN--GCVVCNMGHS  166 (542)
Q Consensus       153 ~mk~--GailvnvG~g  166 (542)
                      .+++  +..++++..+
T Consensus        81 ~l~~~~~~~vvs~~~g   96 (267)
T PRK11880         81 ELKGQLDKLVVSIAAG   96 (267)
T ss_pred             HHHhhcCCEEEEecCC
Confidence            4443  3456655443

>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional

Probab=97.02  E-value=0.0032  Score=65.01  Aligned_cols=103  Identities=17%  Similarity=0.183  Sum_probs=73.9

Q ss_pred             HHHHHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHh-CCCEEEEEeCCchhhhhhhcCCcee-eCH------HH----
Q psy4626          61 ESIIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKG-LGCVIYITEIDPICALQACMDGFSV-VKL------NE----  128 (542)
Q Consensus        61 ~s~~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~-~Ga~Viv~d~dp~r~~~A~~~G~~v-~~l------~e----  128 (542)
                      .+.|+++..+  ....|.+|+|.|.|.+|..+++.++. +|++|++++.++.+...+...|.+. ++.      .+    
T Consensus       149 ~ta~~~~~~~--~~~~g~~vlV~g~g~vG~~~~~la~~~~g~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~v~~  226 (338)
T PRK09422        149 VTTYKAIKVS--GIKPGQWIAIYGAGGLGNLALQYAKNVFNAKVIAVDINDDKLALAKEVGADLTINSKRVEDVAKIIQE  226 (338)
T ss_pred             hHHHHHHHhc--CCCCCCEEEEECCcHHHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHcCCcEEecccccccHHHHHHH
Confidence            3345565333  34579999999999999999999998 5999999998888877776666532 211      11    


Q ss_pred             HhcCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCC
Q psy4626         129 VIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHS  166 (542)
Q Consensus       129 ~l~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g  166 (542)
                      ...+.|+++.+++....+ .+.++.+++++.++.+|..
T Consensus       227 ~~~~~d~vi~~~~~~~~~-~~~~~~l~~~G~~v~~g~~  263 (338)
T PRK09422        227 KTGGAHAAVVTAVAKAAF-NQAVDAVRAGGRVVAVGLP  263 (338)
T ss_pred             hcCCCcEEEEeCCCHHHH-HHHHHhccCCCEEEEEeeC
Confidence            223578566655555555 4789999999999998854

>PRK07589 ornithine cyclodeaminase; Validated

Probab=97.01  E-value=0.0038  Score=66.26  Aligned_cols=97  Identities=27%  Similarity=0.408  Sum_probs=71.4

Q ss_pred             CcEEEEEcCChhHHHHHHHHH-hCCC-EEEEEeCCchhhhh-h---hcCCce---eeCHHHHhcCCcEEEEcCCCc---c
Q psy4626          77 GKQVVLCGYGEVGKGCCQSLK-GLGC-VIYITEIDPICALQ-A---CMDGFS---VVKLNEVIRTVDIVVTATGNK---N  144 (542)
Q Consensus        77 GktVvViG~G~IG~~vA~~l~-~~Ga-~Viv~d~dp~r~~~-A---~~~G~~---v~~l~e~l~~aDvVi~atG~~---~  144 (542)
                      -++++|||+|..++..++.+. -+.. +|.+|++++.++.. +   ...++.   +.+.++++.+||||++||.+.   +
T Consensus       129 a~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIIvtaT~S~~~~P  208 (346)
T PRK07589        129 SRTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAGPGLRIVACRSVAEAVEGADIITTVTADKTNAT  208 (346)
T ss_pred             CcEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCCCCCCc
Confidence            578999999999987766554 4555 89999999987542 1   122433   346789999999999988643   5


Q ss_pred             cCCHHHHhccCCCeEEEeccCCC---cccChHhhc
Q psy4626         145 VVTREHMDKMKNGCVVCNMGHSN---TEIDVNSLR  176 (542)
Q Consensus       145 lI~~e~l~~mk~GailvnvG~g~---~eid~~aL~  176 (542)
                      ++..   +.+|+|+.+..+|.+.   .|+|.+-+.
T Consensus       209 vl~~---~~lkpG~hV~aIGs~~p~~~Eld~~~l~  240 (346)
T PRK07589        209 ILTD---DMVEPGMHINAVGGDCPGKTELHPDILR  240 (346)
T ss_pred             eecH---HHcCCCcEEEecCCCCCCcccCCHHHHh
Confidence            6654   4579999999999763   677766554

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=97.01  E-value=0.0023  Score=61.92  Aligned_cols=88  Identities=17%  Similarity=0.183  Sum_probs=55.4

Q ss_pred             cEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce---------------------e-eCHHHHhcCCcE
Q psy4626          78 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS---------------------V-VKLNEVIRTVDI  135 (542)
Q Consensus        78 ktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~---------------------v-~~l~e~l~~aDv  135 (542)
                      ++|.|+|.|.+|...|..+...|.+|+.+|+|+.+... ...|..                     . .+.+++++.+|+
T Consensus         1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~-l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ai~~adv   79 (185)
T PF03721_consen    1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEA-LNNGELPIYEPGLDELLKENVSAGRLRATTDIEEAIKDADV   79 (185)
T ss_dssp             -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHH-HHTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHHHHHH-SE
T ss_pred             CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHH-Hhhccccccccchhhhhccccccccchhhhhhhhhhhccce
Confidence            47999999999999999999999999999999986543 222321                     1 123455678999


Q ss_pred             EEEcCCCcccCC------------HHHHhccCCCeEEEeccCC
Q psy4626         136 VVTATGNKNVVT------------REHMDKMKNGCVVCNMGHS  166 (542)
Q Consensus       136 Vi~atG~~~lI~------------~e~l~~mk~GailvnvG~g  166 (542)
                      +|.|.+++.--+            .+....++++.+++.-+.-
T Consensus        80 ~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STv  122 (185)
T PF03721_consen   80 VFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTV  122 (185)
T ss_dssp             EEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSS
T ss_pred             EEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEE
Confidence            999987653211            2334556889998876654

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH)

Probab=97.01  E-value=0.0033  Score=66.56  Aligned_cols=101  Identities=22%  Similarity=0.161  Sum_probs=74.1

Q ss_pred             HHHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCCC-EEEEEeCCchhhhhhhcCCceeeC-----HHHHh-----c
Q psy4626          63 IIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMDGFSVVK-----LNEVI-----R  131 (542)
Q Consensus        63 ~~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga-~Viv~d~dp~r~~~A~~~G~~v~~-----l~e~l-----~  131 (542)
                      .|+++..+  ....|++|+|.|.|.+|..+++.++.+|+ +|++++.++.+...+...|...++     ..+.+     .
T Consensus       165 a~~a~~~~--~~~~g~~vlI~g~g~vg~~~~~~a~~~G~~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~i~~~~~~  242 (375)
T cd08282         165 GWHGLELA--GVQPGDTVAVFGAGPVGLMAAYSAILRGASRVYVVDHVPERLDLAESIGAIPIDFSDGDPVEQILGLEPG  242 (375)
T ss_pred             HHHHHHhc--CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCeEeccCcccHHHHHHHhhCC
Confidence            35555332  34579999999999999999999999998 899999888887766667753322     11111     2


Q ss_pred             CCcEEEEcCCCcc-----------cCCHHHHhccCCCeEEEeccCC
Q psy4626         132 TVDIVVTATGNKN-----------VVTREHMDKMKNGCVVCNMGHS  166 (542)
Q Consensus       132 ~aDvVi~atG~~~-----------lI~~e~l~~mk~GailvnvG~g  166 (542)
                      +.|++++|+|...           .++ +.++.+++++.++.+|..
T Consensus       243 ~~d~v~d~~g~~~~~~~~~~~~~~~~~-~~~~~l~~~g~~~~~g~~  287 (375)
T cd08282         243 GVDRAVDCVGYEARDRGGEAQPNLVLN-QLIRVTRPGGGIGIVGVY  287 (375)
T ss_pred             CCCEEEECCCCcccccccccchHHHHH-HHHHHhhcCcEEEEEecc
Confidence            5899999988642           243 678899999999877753

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo

>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases

Probab=97.01  E-value=0.0031  Score=66.56  Aligned_cols=92  Identities=21%  Similarity=0.297  Sum_probs=70.7

Q ss_pred             cccCcEEEEEcCChhHHHHHHHHHhCCCE-EEEEeCCchhhhhhhcCCce-eeC-------HHHHh-----cCCcEEEEc
Q psy4626          74 MFGGKQVVLCGYGEVGKGCCQSLKGLGCV-IYITEIDPICALQACMDGFS-VVK-------LNEVI-----RTVDIVVTA  139 (542)
Q Consensus        74 ~l~GktVvViG~G~IG~~vA~~l~~~Ga~-Viv~d~dp~r~~~A~~~G~~-v~~-------l~e~l-----~~aDvVi~a  139 (542)
                      ...|++|+|.|.|.+|..+++.++.+|++ |++++.++.+...+...|.. +++       ..+.+     ...|+++++
T Consensus       181 ~~~g~~vlI~g~g~vG~~a~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~l~~~~~~~~d~vid~  260 (365)
T cd05279         181 VTPGSTCAVFGLGGVGLSVIMGCKAAGASRIIAVDINKDKFEKAKQLGATECINPRDQDKPIVEVLTEMTDGGVDYAFEV  260 (365)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHhCCCeecccccccchHHHHHHHHhCCCCcEEEEC
Confidence            45799999999999999999999999995 77888778777666666653 222       11111     368999999


Q ss_pred             CCCcccCCHHHHhccC-CCeEEEeccCC
Q psy4626         140 TGNKNVVTREHMDKMK-NGCVVCNMGHS  166 (542)
Q Consensus       140 tG~~~lI~~e~l~~mk-~GailvnvG~g  166 (542)
                      +|....+. +.++.++ +++.++.+|..
T Consensus       261 ~g~~~~~~-~~~~~l~~~~G~~v~~g~~  287 (365)
T cd05279         261 IGSADTLK-QALDATRLGGGTSVVVGVP  287 (365)
T ss_pred             CCCHHHHH-HHHHHhccCCCEEEEEecC
Confidence            98655664 6789998 99999988854

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall

>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR)

Probab=96.98  E-value=0.0073  Score=61.09  Aligned_cols=100  Identities=24%  Similarity=0.307  Sum_probs=73.8

Q ss_pred             HHHHHhhcCccccCcEEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceee-----CHHH-H--h-cCC
Q psy4626          64 IDSLKRSTDVMFGGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVV-----KLNE-V--I-RTV  133 (542)
Q Consensus        64 ~~ai~r~~~~~l~GktVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~-----~l~e-~--l-~~a  133 (542)
                      ++++.+.. ....|++|+|.|. |.+|..+++.++..|++|+++..++.+...+...|+..+     ++.+ .  + ++.
T Consensus       131 ~~~l~~~~-~~~~g~~vlV~ga~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~  209 (320)
T cd08243         131 WGSLFRSL-GLQPGDTLLIRGGTSSVGLAALKLAKALGATVTATTRSPERAALLKELGADEVVIDDGAIAEQLRAAPGGF  209 (320)
T ss_pred             HHHHHHhc-CCCCCCEEEEEcCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCcEEEecCccHHHHHHHhCCCc
Confidence            44443332 2457899999997 999999999999999999999888877666655665321     1111 1  1 469


Q ss_pred             cEEEEcCCCcccCCHHHHhccCCCeEEEeccCC
Q psy4626         134 DIVVTATGNKNVVTREHMDKMKNGCVVCNMGHS  166 (542)
Q Consensus       134 DvVi~atG~~~lI~~e~l~~mk~GailvnvG~g  166 (542)
                      |+++++.|.. .+ .+.++.+++++.++.+|..
T Consensus       210 d~vl~~~~~~-~~-~~~~~~l~~~g~~v~~g~~  240 (320)
T cd08243         210 DKVLELVGTA-TL-KDSLRHLRPGGIVCMTGLL  240 (320)
T ss_pred             eEEEECCChH-HH-HHHHHHhccCCEEEEEccC
Confidence            9999998863 44 4688999999999998853

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=96.98  E-value=0.0028  Score=65.34  Aligned_cols=79  Identities=24%  Similarity=0.245  Sum_probs=56.5

Q ss_pred             HHHHHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCCC-EEEEEeCCchhhhhh-hcC----C-ceee---CHHHHh
Q psy4626          61 ESIIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQA-CMD----G-FSVV---KLNEVI  130 (542)
Q Consensus        61 ~s~~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga-~Viv~d~dp~r~~~A-~~~----G-~~v~---~l~e~l  130 (542)
                      .+++.++++. ...+.+++|+|+|+|..|+.++..|...|+ +|+++++++.++... ...    . ..+.   ++.+.+
T Consensus       112 ~G~~~~l~~~-~~~~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~~~~~~~~~~~~~~~~~  190 (284)
T PRK12549        112 SGFAESFRRG-LPDASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAALADELNARFPAARATAGSDLAAAL  190 (284)
T ss_pred             HHHHHHHHhh-ccCccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhCCCeEEEeccchHhhh
Confidence            4445555432 224678999999999999999999999998 899999998876532 111    1 1222   233456


Q ss_pred             cCCcEEEEcC
Q psy4626         131 RTVDIVVTAT  140 (542)
Q Consensus       131 ~~aDvVi~at  140 (542)
                      .++|+||+||
T Consensus       191 ~~aDiVInaT  200 (284)
T PRK12549        191 AAADGLVHAT  200 (284)
T ss_pred             CCCCEEEECC
Confidence            7899999986

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=96.97  E-value=0.0054  Score=68.17  Aligned_cols=238  Identities=18%  Similarity=0.179  Sum_probs=117.4

Q ss_pred             HHHHHHHhCCCEEEEEeC----CchhhhhhhcCCceeeCHHHHhcCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCC
Q psy4626          91 GCCQSLKGLGCVIYITEI----DPICALQACMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHS  166 (542)
Q Consensus        91 ~vA~~l~~~Ga~Viv~d~----dp~r~~~A~~~G~~v~~l~e~l~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g  166 (542)
                      ..++.|...|.+|+|=.-    .-+.-.+....|+.+.+-++++ ++|+|+-...  +  ..+.++.||+|..++..-+.
T Consensus        21 ~~v~~L~~~G~~V~VE~gAG~~a~fsD~~Y~~aGA~I~~~~~v~-~~diilkV~~--P--~~~e~~~l~~g~~li~~l~p   95 (509)
T PRK09424         21 KTVEQLLKLGFEVVVESGAGQLASFDDAAYREAGAEIVDGAAVW-QSDIILKVNA--P--SDDEIALLREGATLVSFIWP   95 (509)
T ss_pred             HHHHHHHHCCCEEEEeCCCCcCCCCCHHHHHHCCCEEecCcccc-cCCEEEEeCC--C--CHHHHHhcCCCCEEEEEeCc
Confidence            456677888999877321    1111223345677776656777 6999986421  1  24679999999999876655


Q ss_pred             C-cccChHhhcCCCcceeeeccceeeEecCCCCEEEEecCCCcccccCCCChhHHHhhHHHHHHHHHHHHhcCCC-----
Q psy4626         167 N-TEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIVLLAEGRLVNLSCSSLPSFVVSITACTQALALIELFNAPS-----  240 (542)
Q Consensus       167 ~-~eid~~aL~~~~l~v~~~~~~v~~y~~~dg~~I~LLa~GrLvnl~~~thp~~vmd~sfa~q~la~~~L~~~~~-----  240 (542)
                      . +.-.++.+.++.++...-.    .  .|     .+-..++++-|..    +--+.-..|.  +...+.+...-     
T Consensus        96 ~~~~~l~~~l~~~~it~ia~e----~--vp-----r~sraq~~d~lss----ma~IAGy~Av--~~aa~~~~~~~~g~~t  158 (509)
T PRK09424         96 AQNPELLEKLAARGVTVLAMD----A--VP-----RISRAQSLDALSS----MANIAGYRAV--IEAAHEFGRFFTGQIT  158 (509)
T ss_pred             ccCHHHHHHHHHcCCEEEEee----c--cc-----ccccCCCcccccc----hhhhhHHHHH--HHHHHHhcccCCCcee
Confidence            3 3333555655555443221    0  01     0001122222221    1111111122  22222222100     


Q ss_pred             --CC-CCCccccCChhhHHHHHHhcCCcccc-----ccccccHHHHhhcCCC--CCCCCCCCccccCCeeeee-------
Q psy4626         241 --GR-YKSDVYLLPKKMDEYVASLHLPTFDA-----HLTELSDEQAKYMGLN--KAGPFKPSYYSMDGFSVVK-------  303 (542)
Q Consensus       241 --~~-~~~gv~~lp~~~d~~VA~l~L~~lg~-----~i~~lt~~~a~~lg~~--e~~p~~a~ea~mdG~~v~~-------  303 (542)
                        +. -+..|..+-.---=..|-..++.+|.     .+..-..++++.||+.  .+++-.. ...-+||.-..       
T Consensus       159 aaG~~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aeslGA~~v~i~~~e~-~~~~~gya~~~s~~~~~~  237 (509)
T PRK09424        159 AAGKVPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESMGAEFLELDFEEE-GGSGDGYAKVMSEEFIKA  237 (509)
T ss_pred             ccCCcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEEeccccc-cccccchhhhcchhHHHH
Confidence              00 11111111111011111111223332     2222235677778885  2454221 11223332111       


Q ss_pred             ----hhhhcccCcEEEEccCCCC-----ccCHhHHhcCCCCcEEEccCC---CCcccccc
Q psy4626         304 ----LNEVIRTVDIVVTATGNKN-----VVTREHMDKMKNGCVVCNMGH---SNTEIDVN  351 (542)
Q Consensus       304 ----~~~a~~~~d~~~t~tg~~~-----vi~~~~~~~mk~gail~n~gh---~~~Ei~~~  351 (542)
                          +.+.++.+|++|+++|.+.     .|+.+.++.||+|.+++..|.   .++|++++
T Consensus       238 ~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~~~GG~~e~t~~  297 (509)
T PRK09424        238 EMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAAENGGNCELTVP  297 (509)
T ss_pred             HHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEccCCCCCcccccC
Confidence                1233467999999999744     779999999999999999985   33466665

>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family

Probab=96.96  E-value=0.0042  Score=62.92  Aligned_cols=92  Identities=21%  Similarity=0.202  Sum_probs=70.5

Q ss_pred             cccCcEEEEEcCChhHHHHHHHHHhCCCE-EEEEeCCchhhhhhhcCCce-eeC-----HHH----Hh--cCCcEEEEcC
Q psy4626          74 MFGGKQVVLCGYGEVGKGCCQSLKGLGCV-IYITEIDPICALQACMDGFS-VVK-----LNE----VI--RTVDIVVTAT  140 (542)
Q Consensus        74 ~l~GktVvViG~G~IG~~vA~~l~~~Ga~-Viv~d~dp~r~~~A~~~G~~-v~~-----l~e----~l--~~aDvVi~at  140 (542)
                      ...|.+|+|.|.|.+|..+++.++..|++ |+++..++.+...+...|.. +.+     +.+    ..  .+.|+++++.
T Consensus       127 ~~~~~~vlI~g~g~vg~~~~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~vd~vld~~  206 (312)
T cd08269         127 IRAGKTVAVIGAGFIGLLFLQLAAAAGARRVIAIDRRPARLALARELGATEVVTDDSEAIVERVRELTGGAGADVVIEAV  206 (312)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCceEecCCCcCHHHHHHHHcCCCCCCEEEECC
Confidence            45799999999999999999999999998 99988777666555555653 221     211    22  4689999998


Q ss_pred             CCcccCCHHHHhccCCCeEEEeccCC
Q psy4626         141 GNKNVVTREHMDKMKNGCVVCNMGHS  166 (542)
Q Consensus       141 G~~~lI~~e~l~~mk~GailvnvG~g  166 (542)
                      |....+. ..++.|++++.++++|..
T Consensus       207 g~~~~~~-~~~~~l~~~g~~~~~g~~  231 (312)
T cd08269         207 GHQWPLD-LAGELVAERGRLVIFGYH  231 (312)
T ss_pred             CCHHHHH-HHHHHhccCCEEEEEccC
Confidence            7655554 678999999999998854

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i

>PLN02702 L-idonate 5-dehydrogenase

Probab=96.96  E-value=0.0031  Score=66.32  Aligned_cols=92  Identities=18%  Similarity=0.292  Sum_probs=70.5

Q ss_pred             cccCcEEEEEcCChhHHHHHHHHHhCCCE-EEEEeCCchhhhhhhcCCceee--------CHHHH---h-----cCCcEE
Q psy4626          74 MFGGKQVVLCGYGEVGKGCCQSLKGLGCV-IYITEIDPICALQACMDGFSVV--------KLNEV---I-----RTVDIV  136 (542)
Q Consensus        74 ~l~GktVvViG~G~IG~~vA~~l~~~Ga~-Viv~d~dp~r~~~A~~~G~~v~--------~l~e~---l-----~~aDvV  136 (542)
                      ...|++|+|.|.|.+|..+++.++.+|++ |++++.++.+...+...|....        +..+.   +     ...|+|
T Consensus       179 ~~~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v  258 (364)
T PLN02702        179 IGPETNVLVMGAGPIGLVTMLAARAFGAPRIVIVDVDDERLSVAKQLGADEIVLVSTNIEDVESEVEEIQKAMGGGIDVS  258 (364)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEecCcccccHHHHHHHHhhhcCCCCCEE
Confidence            35799999999999999999999999995 7888888777766666665421        11111   1     358999


Q ss_pred             EEcCCCcccCCHHHHhccCCCeEEEeccCC
Q psy4626         137 VTATGNKNVVTREHMDKMKNGCVVCNMGHS  166 (542)
Q Consensus       137 i~atG~~~lI~~e~l~~mk~GailvnvG~g  166 (542)
                      ++++|....+ .+.++.+++++.++.+|..
T Consensus       259 id~~g~~~~~-~~~~~~l~~~G~~v~~g~~  287 (364)
T PLN02702        259 FDCVGFNKTM-STALEATRAGGKVCLVGMG  287 (364)
T ss_pred             EECCCCHHHH-HHHHHHHhcCCEEEEEccC
Confidence            9999865555 4789999999999998853

>TIGR01751 crot-CoA-red crotonyl-CoA reductase

Probab=96.95  E-value=0.0038  Score=66.73  Aligned_cols=91  Identities=21%  Similarity=0.193  Sum_probs=69.9

Q ss_pred             cccCcEEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce-eeCH-------------------------
Q psy4626          74 MFGGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVKL-------------------------  126 (542)
Q Consensus        74 ~l~GktVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~-v~~l-------------------------  126 (542)
                      ...|.+|+|.|. |.+|+.+++.++.+|++|++++.++.+...+...|.. +++.                         
T Consensus       187 ~~~g~~vlV~Ga~g~vG~~ai~~ak~~G~~vi~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (398)
T TIGR01751       187 VKPGDNVLIWGAAGGLGSYATQLARAGGGNPVAVVSSPEKAEYCRELGAEAVIDRNDFGHWGRLPDLNTQAPKEWTKSFK  266 (398)
T ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHcCCCEEecCCCcchhhccccccccccchhhhcch
Confidence            457899999998 9999999999999999998888777776666666642 2211                         


Q ss_pred             ------HHHh--cCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCC
Q psy4626         127 ------NEVI--RTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHS  166 (542)
Q Consensus       127 ------~e~l--~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g  166 (542)
                            .+..  +++|++++|+|.. .+. ..++.+++++.++.+|..
T Consensus       267 ~~~~~~~~~~~~~g~d~vld~~g~~-~~~-~~~~~l~~~G~~v~~g~~  312 (398)
T TIGR01751       267 RFGKRIRELTGGEDPDIVFEHPGRA-TFP-TSVFVCRRGGMVVICGGT  312 (398)
T ss_pred             hHHHHHHHHcCCCCceEEEECCcHH-HHH-HHHHhhccCCEEEEEccc
Confidence                  1111  3599999999863 453 689999999999999854

The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae.

>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family

Probab=96.94  E-value=0.0057  Score=63.48  Aligned_cols=103  Identities=17%  Similarity=0.192  Sum_probs=75.0

Q ss_pred             HHHHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce-eeCH------HHHh----
Q psy4626          62 SIIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVKL------NEVI----  130 (542)
Q Consensus        62 s~~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~-v~~l------~e~l----  130 (542)
                      ..++++.+.. ....|++|+|.|.|.+|..+++.++.+|++|+++..++.+...+...|.+ +++.      .+.+    
T Consensus       152 ta~~~l~~~~-~~~~~~~vlV~g~g~vg~~~~~~a~~~G~~vi~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~  230 (345)
T cd08260         152 TAFRALVHQA-RVKPGEWVAVHGCGGVGLSAVMIASALGARVIAVDIDDDKLELARELGAVATVNASEVEDVAAAVRDLT  230 (345)
T ss_pred             HHHHHHHHcc-CCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHhCCCEEEccccchhHHHHHHHHh
Confidence            3445543322 24578999999999999999999999999999998888776655556653 2221      1111    


Q ss_pred             -cCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCC
Q psy4626         131 -RTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHS  166 (542)
Q Consensus       131 -~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g  166 (542)
                       ...|++++++|....+. +.++.+++++.++..|..
T Consensus       231 ~~~~d~vi~~~g~~~~~~-~~~~~l~~~g~~i~~g~~  266 (345)
T cd08260         231 GGGAHVSVDALGIPETCR-NSVASLRKRGRHVQVGLT  266 (345)
T ss_pred             CCCCCEEEEcCCCHHHHH-HHHHHhhcCCEEEEeCCc
Confidence             26999999988544453 678999999999998864

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=96.93  E-value=0.0021  Score=63.10  Aligned_cols=90  Identities=19%  Similarity=0.248  Sum_probs=60.6

Q ss_pred             ccccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhh-hhhcCC-ceee--CH-HHHhcCCcEEEEcCCCcccCC
Q psy4626          73 VMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICAL-QACMDG-FSVV--KL-NEVIRTVDIVVTATGNKNVVT  147 (542)
Q Consensus        73 ~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~-~A~~~G-~~v~--~l-~e~l~~aDvVi~atG~~~lI~  147 (542)
                      ..+.|++|+|+|.|.+|...++.|...|++|++++.+..... .....+ ....  .+ +..+.++|+||.||+++. +|
T Consensus         6 l~l~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~~~~~l~~l~~~~~i~~~~~~~~~~~l~~adlViaaT~d~e-lN   84 (202)
T PRK06718          6 IDLSNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPELTENLVKLVEEGKIRWKQKEFEPSDIVDAFLVIAATNDPR-VN   84 (202)
T ss_pred             EEcCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHhCCCEEEEecCCChhhcCCceEEEEcCCCHH-HH
Confidence            357899999999999999999999999999999976543322 111222 2221  12 234689999999998754 44


Q ss_pred             HHHHhccCCCeEEEecc
Q psy4626         148 REHMDKMKNGCVVCNMG  164 (542)
Q Consensus       148 ~e~l~~mk~GailvnvG  164 (542)
                      .......+.+ .++|+.
T Consensus        85 ~~i~~~a~~~-~lvn~~  100 (202)
T PRK06718         85 EQVKEDLPEN-ALFNVI  100 (202)
T ss_pred             HHHHHHHHhC-CcEEEC
Confidence            3333333444 577765

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=96.93  E-value=0.0026  Score=68.45  Aligned_cols=87  Identities=18%  Similarity=0.184  Sum_probs=61.0

Q ss_pred             EEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhc----------------CCcee---eCHHHHhcCCcEEEEc
Q psy4626          79 QVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACM----------------DGFSV---VKLNEVIRTVDIVVTA  139 (542)
Q Consensus        79 tVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~----------------~G~~v---~~l~e~l~~aDvVi~a  139 (542)
                      +|+|+|.|.+|..+|..+. .|.+|+++|+|+.+......                .+...   .+..+++.++|+||.|
T Consensus         2 kI~VIGlGyvGl~~A~~lA-~G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~~~~ad~vii~   80 (388)
T PRK15057          2 KITISGTGYVGLSNGLLIA-QNHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNEAYRDADYVIIA   80 (388)
T ss_pred             EEEEECCCHHHHHHHHHHH-hCCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhhhhcCCCEEEEe
Confidence            6999999999999997776 59999999999988654322                11111   2245667899999999


Q ss_pred             CCCc-----ccCC----H---HHHhccCCCeEEEeccCC
Q psy4626         140 TGNK-----NVVT----R---EHMDKMKNGCVVCNMGHS  166 (542)
Q Consensus       140 tG~~-----~lI~----~---e~l~~mk~GailvnvG~g  166 (542)
                      ++++     ...+    .   +.+..+++|.+++..+.-
T Consensus        81 Vpt~~~~k~~~~dl~~v~~v~~~i~~~~~g~lVV~~STv  119 (388)
T PRK15057         81 TPTDYDPKTNYFNTSSVESVIKDVVEINPYAVMVIKSTV  119 (388)
T ss_pred             CCCCCccCCCCcChHHHHHHHHHHHhcCCCCEEEEeeec
Confidence            8765     1111    0   223336889999877654

>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like

Probab=96.93  E-value=0.0044  Score=64.19  Aligned_cols=92  Identities=23%  Similarity=0.226  Sum_probs=70.3

Q ss_pred             cccCcEEEEEcCChhHHHHHHHHHhCCCE-EEEEeCCchhhhhhhcCCce-eeC-----HHH-H---h--cCCcEEEEcC
Q psy4626          74 MFGGKQVVLCGYGEVGKGCCQSLKGLGCV-IYITEIDPICALQACMDGFS-VVK-----LNE-V---I--RTVDIVVTAT  140 (542)
Q Consensus        74 ~l~GktVvViG~G~IG~~vA~~l~~~Ga~-Viv~d~dp~r~~~A~~~G~~-v~~-----l~e-~---l--~~aDvVi~at  140 (542)
                      ...|.+|+|.|.|.+|..+++.++.+|++ |++++.++.+...+...|.. +++     ..+ +   .  .+.|++++++
T Consensus       166 ~~~g~~vlI~g~g~vg~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~ga~~v~~~~~~~~~~~i~~~~~~~~~d~il~~~  245 (345)
T cd08287         166 VRPGSTVVVVGDGAVGLCAVLAAKRLGAERIIAMSRHEDRQALAREFGATDIVAERGEEAVARVRELTGGVGADAVLECV  245 (345)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCceEecCCcccHHHHHHHhcCCCCCCEEEECC
Confidence            45799999999999999999999999995 88888777666655666653 222     111 1   2  3699999999


Q ss_pred             CCcccCCHHHHhccCCCeEEEeccCC
Q psy4626         141 GNKNVVTREHMDKMKNGCVVCNMGHS  166 (542)
Q Consensus       141 G~~~lI~~e~l~~mk~GailvnvG~g  166 (542)
                      |....++ ..++.+++++.++..|..
T Consensus       246 g~~~~~~-~~~~~l~~~g~~v~~g~~  270 (345)
T cd08287         246 GTQESME-QAIAIARPGGRVGYVGVP  270 (345)
T ss_pred             CCHHHHH-HHHHhhccCCEEEEeccc
Confidence            8765664 678999999999988754

This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>TIGR02823 oxido_YhdH putative quinone oxidoreductase, YhdH/YhfP family

Probab=96.92  E-value=0.0045  Score=63.34  Aligned_cols=91  Identities=19%  Similarity=0.168  Sum_probs=68.9

Q ss_pred             cccCc-EEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce-eeCHH-------HHh-cCCcEEEEcCCC
Q psy4626          74 MFGGK-QVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVKLN-------EVI-RTVDIVVTATGN  142 (542)
Q Consensus        74 ~l~Gk-tVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~-v~~l~-------e~l-~~aDvVi~atG~  142 (542)
                      ...|. +|+|.|. |.+|..+++.++.+|++|+++..++.+...+...|.. +.+.+       ... ...|++++++|.
T Consensus       142 ~~~~~~~vlI~g~~g~vg~~~~~la~~~G~~vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~d~vld~~g~  221 (323)
T TIGR02823       142 LTPEDGPVLVTGATGGVGSLAVAILSKLGYEVVASTGKAEEEDYLKELGASEVIDREDLSPPGKPLEKERWAGAVDTVGG  221 (323)
T ss_pred             CCCCCceEEEEcCCcHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHhcCCcEEEccccHHHHHHHhcCCCceEEEECccH
Confidence            34687 9999998 9999999999999999999887777666555555653 22211       111 247999999987


Q ss_pred             cccCCHHHHhccCCCeEEEeccCC
Q psy4626         143 KNVVTREHMDKMKNGCVVCNMGHS  166 (542)
Q Consensus       143 ~~lI~~e~l~~mk~GailvnvG~g  166 (542)
                      . .+ .+.++.+++++.++..|..
T Consensus       222 ~-~~-~~~~~~l~~~G~~v~~g~~  243 (323)
T TIGR02823       222 H-TL-ANVLAQLKYGGAVAACGLA  243 (323)
T ss_pred             H-HH-HHHHHHhCCCCEEEEEccc
Confidence            5 34 3689999999999999854

This model represents a subfamily of pfam00107 as defined by Pfam, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This subfamily includes proteins studied crystallographically for insight into function: YhdH from Escherichia coli and YhfP from Bacillus subtilis. Members bind NADPH or NAD, but not zinc.

>PRK07680 late competence protein ComER; Validated

Probab=96.92  E-value=0.0026  Score=64.82  Aligned_cols=86  Identities=16%  Similarity=0.251  Sum_probs=61.9

Q ss_pred             EEEEEcCChhHHHHHHHHHhCCC----EEEEEeCCchhhhhhhc--CCceee-CHHHHhcCCcEEEEcCCCcccCCHHHH
Q psy4626          79 QVVLCGYGEVGKGCCQSLKGLGC----VIYITEIDPICALQACM--DGFSVV-KLNEVIRTVDIVVTATGNKNVVTREHM  151 (542)
Q Consensus        79 tVvViG~G~IG~~vA~~l~~~Ga----~Viv~d~dp~r~~~A~~--~G~~v~-~l~e~l~~aDvVi~atG~~~lI~~e~l  151 (542)
                      +++|||+|.+|..++..+...|.    +|+++++++.+......  .|.... +..+++..+|+||.|+-.. .+ .+.+
T Consensus         2 ~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~aDiVilav~p~-~~-~~vl   79 (273)
T PRK07680          2 NIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKERYPGIHVAKTIEEVISQSDLIFICVKPL-DI-YPLL   79 (273)
T ss_pred             EEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHHcCCeEEECCHHHHHHhCCEEEEecCHH-HH-HHHH
Confidence            68999999999999999988883    79999998876543322  255543 5667788999999987422 22 2333


Q ss_pred             ----hccCCCeEEEeccCC
Q psy4626         152 ----DKMKNGCVVCNMGHS  166 (542)
Q Consensus       152 ----~~mk~GailvnvG~g  166 (542)
                          ..++++..++.+..+
T Consensus        80 ~~l~~~l~~~~~iis~~ag   98 (273)
T PRK07680         80 QKLAPHLTDEHCLVSITSP   98 (273)
T ss_pred             HHHHhhcCCCCEEEEECCC
Confidence                345677888887754

>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD)

Probab=96.92  E-value=0.0079  Score=62.22  Aligned_cols=102  Identities=20%  Similarity=0.220  Sum_probs=75.1

Q ss_pred             HHHHHHHhhcCccccCcEEEEEcCCh-hHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce-eeC-----HH----HHh
Q psy4626          62 SIIDSLKRSTDVMFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVK-----LN----EVI  130 (542)
Q Consensus        62 s~~~ai~r~~~~~l~GktVvViG~G~-IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~-v~~-----l~----e~l  130 (542)
                      +.|+++...  ....|.+++|.|.|. +|..+++.++.+|++|+++..++.+...+...|+. +++     ..    +..
T Consensus       153 ta~~~~~~~--~~~~~~~vlV~g~~~~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~  230 (341)
T cd08297         153 TVYKALKKA--GLKPGDWVVISGAGGGLGHLGVQYAKAMGLRVIAIDVGDEKLELAKELGADAFVDFKKSDDVEAVKELT  230 (341)
T ss_pred             HHHHHHHhc--CCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCcEEEcCCCccHHHHHHHHh
Confidence            345555443  245689999999976 99999999999999999999888777665556653 221     11    112


Q ss_pred             --cCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCC
Q psy4626         131 --RTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHS  166 (542)
Q Consensus       131 --~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g  166 (542)
                        ++.|+++++.+....++ +.++.++++++++..|..
T Consensus       231 ~~~~vd~vl~~~~~~~~~~-~~~~~l~~~g~~v~~g~~  267 (341)
T cd08297         231 GGGGAHAVVVTAVSAAAYE-QALDYLRPGGTLVCVGLP  267 (341)
T ss_pred             cCCCCCEEEEcCCchHHHH-HHHHHhhcCCEEEEecCC
Confidence              46899999776555564 688999999999998853

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha

>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional

Probab=96.91  E-value=0.0041  Score=67.78  Aligned_cols=89  Identities=11%  Similarity=0.128  Sum_probs=65.2

Q ss_pred             CcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce-----------------eeCHHHHhcCCcEEEEc
Q psy4626          77 GKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-----------------VVKLNEVIRTVDIVVTA  139 (542)
Q Consensus        77 GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~-----------------v~~l~e~l~~aDvVi~a  139 (542)
                      -.+|+|+|.|.+|..+|..+.. |.+|+++|+++.+..... .|..                 ..+..+.++++|++|.|
T Consensus         6 ~mkI~vIGlGyvGlpmA~~la~-~~~V~g~D~~~~~ve~l~-~G~~~~~e~~~~~l~~~g~l~~t~~~~~~~~advvii~   83 (425)
T PRK15182          6 EVKIAIIGLGYVGLPLAVEFGK-SRQVVGFDVNKKRILELK-NGVDVNLETTEEELREARYLKFTSEIEKIKECNFYIIT   83 (425)
T ss_pred             CCeEEEECcCcchHHHHHHHhc-CCEEEEEeCCHHHHHHHH-CcCCCCCCCCHHHHHhhCCeeEEeCHHHHcCCCEEEEE
Confidence            3689999999999999999876 799999999998765433 3322                 23333467899999999


Q ss_pred             CCCcc----------cCC--HHHHhccCCCeEEEeccCCC
Q psy4626         140 TGNKN----------VVT--REHMDKMKNGCVVCNMGHSN  167 (542)
Q Consensus       140 tG~~~----------lI~--~e~l~~mk~GailvnvG~g~  167 (542)
                      .+++.          +..  ....+.+++|.++|..+.-.
T Consensus        84 Vptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~  123 (425)
T PRK15182         84 VPTPINTYKQPDLTPLIKASETVGTVLNRGDIVVYESTVY  123 (425)
T ss_pred             cCCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecCCC
Confidence            88762          111  22346778999999877653

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=96.91  E-value=0.02  Score=59.44  Aligned_cols=217  Identities=19%  Similarity=0.180  Sum_probs=128.2

Q ss_pred             HHHHhCCCEEEEEeCC----chhhhhhhcCCceee-CHHHHhcCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCCCc
Q psy4626          94 QSLKGLGCVIYITEID----PICALQACMDGFSVV-KLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNT  168 (542)
Q Consensus        94 ~~l~~~Ga~Viv~d~d----p~r~~~A~~~G~~v~-~l~e~l~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g~~  168 (542)
                      +.+...|-+|+|=.--    .+.-..-...|+..+ +.++++.++|.|+-+-.   -+ +..-..+|.|.++..-=|-..
T Consensus        24 ~~l~~~GheVlVe~gAG~gsg~~D~~Y~~aGA~Iv~ta~~vw~~~dmvvKvKE---P~-~~EY~ylregqiLftyLHLA~   99 (371)
T COG0686          24 RELVNHGHEVLVETGAGAGSGFDDDDYEAAGAKIVATAAEVWAEADMVVKVKE---PL-PSEYPYLREGQILFTYLHLAA   99 (371)
T ss_pred             HHHHhCCcEEEEecCCcCCCCCChHHHHHcCCEEecCHHHhhcccceEEEecC---CC-hhhhhhhcCCcEEEEEeeecC
Confidence            4566778888774210    111122334577766 77888989999988742   22 357788999999987665422


Q ss_pred             -ccChHhhcCCCcceeeeccceeeEecCCCCEEEEecCCCcccccCCCChhHHHhhHHHHHHHHHHHHhcCCC--CCCCC
Q psy4626         169 -EIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIVLLAEGRLVNLSCSSLPSFVVSITACTQALALIELFNAPS--GRYKS  245 (542)
Q Consensus       169 -eid~~aL~~~~l~v~~~~~~v~~y~~~dg~~I~LLa~GrLvnl~~~thp~~vmd~sfa~q~la~~~L~~~~~--~~~~~  245 (542)
                       .-..+.|.+...+-.       .|.     . .-+++|.++.|+    ||-.+.-..+.|+=++ +|-+..+  +-+-.
T Consensus       100 ~~~lt~~l~~~gvtaI-------ayE-----T-V~~~~g~lPlLa----PMSeVAGrla~q~Ga~-~lek~~GG~Gvllg  161 (371)
T COG0686         100 SPELTEALLKSGVTAI-------AYE-----T-VQLPDGNLPLLA----PMSEVAGRLAAQAGAY-YLEKTNGGKGVLLG  161 (371)
T ss_pred             ChHHHHHHHHcCcceE-------EEE-----E-EEcCCCCCcccc----hHHHHhhhHHHHHHHH-HHHhccCCceeEec
Confidence             222234443221111       121     1 234456666655    5555455555655433 3444332  22344


Q ss_pred             ccccCChhhHHHHHHhcCCcccc-ccccccHHHHhhcCCC------CCCCCCCCccccCCeeee-------ehhhhcccC
Q psy4626         246 DVYLLPKKMDEYVASLHLPTFDA-HLTELSDEQAKYMGLN------KAGPFKPSYYSMDGFSVV-------KLNEVIRTV  311 (542)
Q Consensus       246 gv~~lp~~~d~~VA~l~L~~lg~-~i~~lt~~~a~~lg~~------e~~p~~a~ea~mdG~~v~-------~~~~a~~~~  311 (542)
                      ||+.+++.        +...+|. -++.-.++-|-+||+.      ..+-.|.++.. -|.+|+       .++++++.+
T Consensus       162 GvpGV~~~--------kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~-f~~rv~~~~st~~~iee~v~~a  232 (371)
T COG0686         162 GVPGVLPA--------KVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDL-FGGRVHTLYSTPSNIEEAVKKA  232 (371)
T ss_pred             CCCCCCCc--------cEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHh-hCceeEEEEcCHHHHHHHhhhc
Confidence            55554443        3334444 4444457788899984      22356777774 344443       358999999


Q ss_pred             cEEEE---ccC--CCCccCHhHHhcCCCCcEEEcc
Q psy4626         312 DIVVT---ATG--NKNVVTREHMDKMKNGCVVCNM  341 (542)
Q Consensus       312 d~~~t---~tg--~~~vi~~~~~~~mk~gail~n~  341 (542)
                      |+||.   .+|  .+.++++++++.||+|++++.+
T Consensus       233 DlvIgaVLIpgakaPkLvt~e~vk~MkpGsVivDV  267 (371)
T COG0686         233 DLVIGAVLIPGAKAPKLVTREMVKQMKPGSVIVDV  267 (371)
T ss_pred             cEEEEEEEecCCCCceehhHHHHHhcCCCcEEEEE
Confidence            99998   444  5678999999999999999854

>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1

Probab=96.90  E-value=0.009  Score=61.46  Aligned_cols=108  Identities=17%  Similarity=0.240  Sum_probs=80.8

Q ss_pred             hhcCccccCcEEEEEcCChhHHHHHHHHHhC----CC-------EEEEEeCCc-----------hhhhhhhcCC-ceeeC
Q psy4626          69 RSTDVMFGGKQVVLCGYGEVGKGCCQSLKGL----GC-------VIYITEIDP-----------ICALQACMDG-FSVVK  125 (542)
Q Consensus        69 r~~~~~l~GktVvViG~G~IG~~vA~~l~~~----Ga-------~Viv~d~dp-----------~r~~~A~~~G-~~v~~  125 (542)
                      +.++..+...+++|+|+|.-|.++|+.+...    |+       +++++|...           .+...+.... ....+
T Consensus        17 k~~g~~l~d~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~Gll~~~r~~l~~~~~~~a~~~~~~~~~~   96 (279)
T cd05312          17 RITGKPLSDQRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSKGLLTKDRKDLTPFKKPFARKDEEKEGKS   96 (279)
T ss_pred             HHhCCChhhcEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCCCeEeCCCCcchHHHHHHHhhcCcccCCC
Confidence            3456778899999999999999999988876    87       788888652           2222333211 13357


Q ss_pred             HHHHhc--CCcEEEEcCCCcccCCHHHHhccC---CCeEEEeccCCCc--ccChHhhc
Q psy4626         126 LNEVIR--TVDIVVTATGNKNVVTREHMDKMK---NGCVVCNMGHSNT--EIDVNSLR  176 (542)
Q Consensus       126 l~e~l~--~aDvVi~atG~~~lI~~e~l~~mk---~GailvnvG~g~~--eid~~aL~  176 (542)
                      +.++++  ++|++|-+++..++++++.++.|.   +.-+|.-.+....  |+..+...
T Consensus        97 L~e~i~~v~ptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLSNPt~~~E~~pe~a~  154 (279)
T cd05312          97 LLEVVKAVKPTVLIGLSGVGGAFTEEVVRAMAKSNERPIIFALSNPTSKAECTAEDAY  154 (279)
T ss_pred             HHHHHHhcCCCEEEEeCCCCCCCCHHHHHHHHhcCCCCEEEECCCcCCccccCHHHHH
Confidence            889988  999999999878899999999997   6777777776643  76665443

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH

>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed

Probab=96.90  E-value=0.0055  Score=70.89  Aligned_cols=121  Identities=18%  Similarity=0.226  Sum_probs=91.5

Q ss_pred             HHhHHHHHHHHHHHHH---hhcCccccCcEEEEEcCChhHHHHHHHHHhCCC---EEEEEeCC------------chhhh
Q psy4626          53 FDNLYMCRESIIDSLK---RSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGC---VIYITEID------------PICAL  114 (542)
Q Consensus        53 fd~~~g~~~s~~~ai~---r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga---~Viv~d~d------------p~r~~  114 (542)
                      .|..+||+-.+..++.   +.++..+...+++|.|+|.-|.++++.+...|+   +++++|..            +.+..
T Consensus       158 ~DD~~GTa~v~lA~l~na~~~~~~~~~~~~iv~~GaGaag~~~a~~l~~~G~~~~~i~~~D~~G~i~~~r~~~~~~~k~~  237 (752)
T PRK07232        158 HDDQHGTAIISAAALLNALELVGKKIEDVKIVVSGAGAAAIACLNLLVALGAKKENIIVCDSKGVIYKGRTEGMDEWKAA  237 (752)
T ss_pred             ccccchHHHHHHHHHHHHHHHhCCChhhcEEEEECccHHHHHHHHHHHHcCCCcccEEEEcCCCeecCCCcccccHHHHH
Confidence            3666777755555443   345667888999999999999999999999999   78888843            22222


Q ss_pred             hhhcCCceeeCHHHHhcCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCCCcccChHhhc
Q psy4626         115 QACMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLR  176 (542)
Q Consensus       115 ~A~~~G~~v~~l~e~l~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g~~eid~~aL~  176 (542)
                      .|..  ....++.++++++|++|-+++ +++++++.++.|.+.-++.-.+....|+..+...
T Consensus       238 ~a~~--~~~~~l~~~i~~~~v~iG~s~-~g~~~~~~v~~M~~~piifalsNP~~E~~p~~a~  296 (752)
T PRK07232        238 YAVD--TDARTLAEAIEGADVFLGLSA-AGVLTPEMVKSMADNPIIFALANPDPEITPEEAK  296 (752)
T ss_pred             Hhcc--CCCCCHHHHHcCCCEEEEcCC-CCCCCHHHHHHhccCCEEEecCCCCccCCHHHHH
Confidence            3332  223478999999999999887 7899999999999888888877776677766443

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=96.88  E-value=0.0019  Score=72.69  Aligned_cols=36  Identities=28%  Similarity=0.373  Sum_probs=33.1

Q ss_pred             cccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCC
Q psy4626          74 MFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEID  109 (542)
Q Consensus        74 ~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~d  109 (542)
                      ...|++|+|+|.|++|..+|..|+.+|++|+++|..
T Consensus       134 ~~~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~  169 (564)
T PRK12771        134 PDTGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAG  169 (564)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecC
Confidence            357999999999999999999999999999999854

>PRK08818 prephenate dehydrogenase; Provisional

Probab=96.86  E-value=0.0031  Score=67.49  Aligned_cols=82  Identities=10%  Similarity=0.141  Sum_probs=61.2

Q ss_pred             cCcEEEEEcC-ChhHHHHHHHHHh-CCCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCCcEEEEcCCCc---ccCCHHH
Q psy4626          76 GGKQVVLCGY-GEVGKGCCQSLKG-LGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNK---NVVTREH  150 (542)
Q Consensus        76 ~GktVvViG~-G~IG~~vA~~l~~-~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~aDvVi~atG~~---~lI~~e~  150 (542)
                      .-.+|+|||. |-||..+|+.++. .|.+|+.+|++..          ...++++.+.++|+||.|+-..   .++. +.
T Consensus         3 ~~~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~d~----------~~~~~~~~v~~aDlVilavPv~~~~~~l~-~l   71 (370)
T PRK08818          3 AQPVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPADP----------GSLDPATLLQRADVLIFSAPIRHTAALIE-EY   71 (370)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCCcc----------ccCCHHHHhcCCCEEEEeCCHHHHHHHHH-HH
Confidence            4569999999 9999999999996 4889999986311          1235667789999999997532   2232 22


Q ss_pred             Hh---ccCCCeEEEeccCCCc
Q psy4626         151 MD---KMKNGCVVCNMGHSNT  168 (542)
Q Consensus       151 l~---~mk~GailvnvG~g~~  168 (542)
                      ..   .++++++++.+|+-..
T Consensus        72 ~~~~~~l~~~~iVtDVgSvK~   92 (370)
T PRK08818         72 VALAGGRAAGQLWLDVTSIKQ   92 (370)
T ss_pred             hhhhcCCCCCeEEEECCCCcH
Confidence            22   2789999999998753

>PRK06476 pyrroline-5-carboxylate reductase; Reviewed

Probab=96.86  E-value=0.0049  Score=62.22  Aligned_cols=86  Identities=14%  Similarity=0.167  Sum_probs=61.0

Q ss_pred             EEEEEcCChhHHHHHHHHHhCCC---EEEEEeCCchhhhhhhc-C-Ccee-eCHHHHhcCCcEEEEcCCCcccCCHHHHh
Q psy4626          79 QVVLCGYGEVGKGCCQSLKGLGC---VIYITEIDPICALQACM-D-GFSV-VKLNEVIRTVDIVVTATGNKNVVTREHMD  152 (542)
Q Consensus        79 tVvViG~G~IG~~vA~~l~~~Ga---~Viv~d~dp~r~~~A~~-~-G~~v-~~l~e~l~~aDvVi~atG~~~lI~~e~l~  152 (542)
                      +++|+|+|.+|..+++.+...|.   .+.++++++.+...... . +..+ .+.+++++.+|+||.|+.. ..+ .+.++
T Consensus         2 ~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~aDvVilav~p-~~~-~~vl~   79 (258)
T PRK06476          2 KIGFIGTGAITEAMVTGLLTSPADVSEIIVSPRNAQIAARLAERFPKVRIAKDNQAVVDRSDVVFLAVRP-QIA-EEVLR   79 (258)
T ss_pred             eEEEECcCHHHHHHHHHHHhCCCChheEEEECCCHHHHHHHHHHcCCceEeCCHHHHHHhCCEEEEEeCH-HHH-HHHHH
Confidence            69999999999999999988774   46789988877654332 2 4544 4667778899999999763 223 23332


Q ss_pred             c--cCCCeEEEeccCC
Q psy4626         153 K--MKNGCVVCNMGHS  166 (542)
Q Consensus       153 ~--mk~GailvnvG~g  166 (542)
                      .  ++++..++.+..+
T Consensus        80 ~l~~~~~~~vis~~ag   95 (258)
T PRK06476         80 ALRFRPGQTVISVIAA   95 (258)
T ss_pred             HhccCCCCEEEEECCC
Confidence            2  4677788877654

>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]

Probab=96.84  E-value=0.0021  Score=63.83  Aligned_cols=96  Identities=24%  Similarity=0.259  Sum_probs=66.2

Q ss_pred             EEEEEcCChhHHHHHHHHHhC--CC-EEEEEeCCchhhhhhh-cCC-ceeeCHHHHhcCCcEEEEcCCCcccCCHHHHhc
Q psy4626          79 QVVLCGYGEVGKGCCQSLKGL--GC-VIYITEIDPICALQAC-MDG-FSVVKLNEVIRTVDIVVTATGNKNVVTREHMDK  153 (542)
Q Consensus        79 tVvViG~G~IG~~vA~~l~~~--Ga-~Viv~d~dp~r~~~A~-~~G-~~v~~l~e~l~~aDvVi~atG~~~lI~~e~l~~  153 (542)
                      +|+++|||.||..+...++.-  .+ .|++||+++.+...+. +.+ -.+.++++.+.++|++++|.+.. .+..-..+.
T Consensus         2 ~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~~~~~~~s~ide~~~~~DlvVEaAS~~-Av~e~~~~~   80 (255)
T COG1712           2 KVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELEASVGRRCVSDIDELIAEVDLVVEAASPE-AVREYVPKI   80 (255)
T ss_pred             eEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHHHhhcCCCccccHHHHhhccceeeeeCCHH-HHHHHhHHH
Confidence            689999999999999999843  45 6889999998876432 223 33577899999999999998643 343234555


Q ss_pred             cCCCe--EEEeccCCCcccChHhh
Q psy4626         154 MKNGC--VVCNMGHSNTEIDVNSL  175 (542)
Q Consensus       154 mk~Ga--ilvnvG~g~~eid~~aL  175 (542)
                      |+.|.  +++++|-..++-..+.+
T Consensus        81 L~~g~d~iV~SVGALad~~l~erl  104 (255)
T COG1712          81 LKAGIDVIVMSVGALADEGLRERL  104 (255)
T ss_pred             HhcCCCEEEEechhccChHHHHHH
Confidence            66654  55566654444333433

>PRK08291 ectoine utilization protein EutC; Validated

Probab=96.83  E-value=0.0057  Score=64.36  Aligned_cols=98  Identities=20%  Similarity=0.229  Sum_probs=70.9

Q ss_pred             cCcEEEEEcCChhHHHHHHHHHh-CCC-EEEEEeCCchhhhhh-h----cCCcee---eCHHHHhcCCcEEEEcCCC-cc
Q psy4626          76 GGKQVVLCGYGEVGKGCCQSLKG-LGC-VIYITEIDPICALQA-C----MDGFSV---VKLNEVIRTVDIVVTATGN-KN  144 (542)
Q Consensus        76 ~GktVvViG~G~IG~~vA~~l~~-~Ga-~Viv~d~dp~r~~~A-~----~~G~~v---~~l~e~l~~aDvVi~atG~-~~  144 (542)
                      ..++++|+|+|..|+..+..+.. .+. +|.++++++.++... .    ..|..+   .++++++.++|+|++||.. .+
T Consensus       131 ~~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~~g~~v~~~~d~~~al~~aDiVi~aT~s~~p  210 (330)
T PRK08291        131 DASRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAELGIPVTVARDVHEAVAGADIIVTTTPSEEP  210 (330)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhccCceEEEeCCHHHHHccCCEEEEeeCCCCc
Confidence            45899999999999998888874 565 899999998876532 1    124442   4567888999999998764 35


Q ss_pred             cCCHHHHhccCCCeEEEeccCC---CcccChHhhc
Q psy4626         145 VVTREHMDKMKNGCVVCNMGHS---NTEIDVNSLR  176 (542)
Q Consensus       145 lI~~e~l~~mk~GailvnvG~g---~~eid~~aL~  176 (542)
                      ++..   +.+++|..+..+|..   ..|++..-+.
T Consensus       211 ~i~~---~~l~~g~~v~~vg~d~~~~rEld~~~l~  242 (330)
T PRK08291        211 ILKA---EWLHPGLHVTAMGSDAEHKNEIAPAVFA  242 (330)
T ss_pred             EecH---HHcCCCceEEeeCCCCCCcccCCHHHHh
Confidence            5653   346899888877765   2567655544

>cd08232 idonate-5-DH L-idonate 5-dehydrogenase

Probab=96.82  E-value=0.0049  Score=63.69  Aligned_cols=101  Identities=21%  Similarity=0.324  Sum_probs=73.0

Q ss_pred             HHHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCCC-EEEEEeCCchhhhhhhcCCce-eeCH-----HHHh---cC
Q psy4626          63 IIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMDGFS-VVKL-----NEVI---RT  132 (542)
Q Consensus        63 ~~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga-~Viv~d~dp~r~~~A~~~G~~-v~~l-----~e~l---~~  132 (542)
                      .+.++.+. +.. .|++|+|.|.|.+|..+++.++.+|+ +|++++.++.+...+...|.. +++.     .+..   .+
T Consensus       154 a~~~l~~~-~~~-~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~g~~~vi~~~~~~~~~~~~~~~~  231 (339)
T cd08232         154 ALHAVNRA-GDL-AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAMGADETVNLARDPLAAYAADKGD  231 (339)
T ss_pred             HHHHHHhc-CCC-CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcCCCEEEcCCchhhhhhhccCCC
Confidence            34555443 233 89999999999999999999999999 899998777665555555542 2322     1222   34


Q ss_pred             CcEEEEcCCCcccCCHHHHhccCCCeEEEeccCC
Q psy4626         133 VDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHS  166 (542)
Q Consensus       133 aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g  166 (542)
                      .|+++++.|....+ .+.++.|++++.+++.|..
T Consensus       232 vd~vld~~g~~~~~-~~~~~~L~~~G~~v~~g~~  264 (339)
T cd08232         232 FDVVFEASGAPAAL-ASALRVVRPGGTVVQVGML  264 (339)
T ss_pred             ccEEEECCCCHHHH-HHHHHHHhcCCEEEEEecC
Confidence            89999998854445 3678999999999998754

L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai

>cd05285 sorbitol_DH Sorbitol dehydrogenase

Probab=96.81  E-value=0.0054  Score=63.76  Aligned_cols=94  Identities=23%  Similarity=0.356  Sum_probs=70.4

Q ss_pred             ccccCcEEEEEcCChhHHHHHHHHHhCCCE-EEEEeCCchhhhhhhcCCce-eeC---------H---HHHh--cCCcEE
Q psy4626          73 VMFGGKQVVLCGYGEVGKGCCQSLKGLGCV-IYITEIDPICALQACMDGFS-VVK---------L---NEVI--RTVDIV  136 (542)
Q Consensus        73 ~~l~GktVvViG~G~IG~~vA~~l~~~Ga~-Viv~d~dp~r~~~A~~~G~~-v~~---------l---~e~l--~~aDvV  136 (542)
                      ...+|++|+|.|.|.+|..+++.++.+|++ |+++..++.+...+...|.. +.+         .   .+..  ++.|+|
T Consensus       159 ~~~~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~~~~~~~~~~~d~v  238 (343)
T cd05285         159 GVRPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKELGATHTVNVRTEDTPESAEKIAELLGGKGPDVV  238 (343)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcCCcEEeccccccchhHHHHHHHHhCCCCCCEE
Confidence            346799999999999999999999999997 88888777666555445543 221         1   1122  348999


Q ss_pred             EEcCCCcccCCHHHHhccCCCeEEEeccCCC
Q psy4626         137 VTATGNKNVVTREHMDKMKNGCVVCNMGHSN  167 (542)
Q Consensus       137 i~atG~~~lI~~e~l~~mk~GailvnvG~g~  167 (542)
                      ++|.|....+ .+.++.+++++.++.+|..+
T Consensus       239 ld~~g~~~~~-~~~~~~l~~~G~~v~~g~~~  268 (343)
T cd05285         239 IECTGAESCI-QTAIYATRPGGTVVLVGMGK  268 (343)
T ss_pred             EECCCCHHHH-HHHHHHhhcCCEEEEEccCC
Confidence            9998865445 36899999999999888543

Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>PRK07679 pyrroline-5-carboxylate reductase; Reviewed

Probab=96.81  E-value=0.0049  Score=63.05  Aligned_cols=88  Identities=13%  Similarity=0.121  Sum_probs=61.6

Q ss_pred             CcEEEEEcCChhHHHHHHHHHhCC----CEEEEEeCCch-hhhh-hhcCCceee-CHHHHhcCCcEEEEcCCCcccCC--
Q psy4626          77 GKQVVLCGYGEVGKGCCQSLKGLG----CVIYITEIDPI-CALQ-ACMDGFSVV-KLNEVIRTVDIVVTATGNKNVVT--  147 (542)
Q Consensus        77 GktVvViG~G~IG~~vA~~l~~~G----a~Viv~d~dp~-r~~~-A~~~G~~v~-~l~e~l~~aDvVi~atG~~~lI~--  147 (542)
                      +.+++|||+|.+|..++..+...|    -+|+++++++. +... +...|.... +..+++..+|+||.|.-...+..  
T Consensus         3 ~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~~~~~~~~l~~~~g~~~~~~~~e~~~~aDvVilav~p~~~~~vl   82 (279)
T PRK07679          3 IQNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSNETRLQELHQKYGVKGTHNKKELLTDANILFLAMKPKDVAEAL   82 (279)
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCCHHHHHHHHHhcCceEeCCHHHHHhcCCEEEEEeCHHHHHHHH
Confidence            458999999999999999999887    58999998764 3332 233466533 56677889999999875433221  


Q ss_pred             HHHHhccCCCeEEEecc
Q psy4626         148 REHMDKMKNGCVVCNMG  164 (542)
Q Consensus       148 ~e~l~~mk~GailvnvG  164 (542)
                      .+....++++.+++++.
T Consensus        83 ~~l~~~~~~~~liIs~~   99 (279)
T PRK07679         83 IPFKEYIHNNQLIISLL   99 (279)
T ss_pred             HHHHhhcCCCCEEEEEC
Confidence            12233456788888863

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=96.81  E-value=0.0031  Score=62.92  Aligned_cols=65  Identities=29%  Similarity=0.381  Sum_probs=51.7

Q ss_pred             cEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhc--CCceeeC--------HHHH-hcCCcEEEEcCCC
Q psy4626          78 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACM--DGFSVVK--------LNEV-IRTVDIVVTATGN  142 (542)
Q Consensus        78 ktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~--~G~~v~~--------l~e~-l~~aDvVi~atG~  142 (542)
                      ++++|+|+|.+|..+|+.|...|..|+++|.|+.+..+...  .+..++.        +.++ +..+|+++-+||+
T Consensus         1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~t~~   76 (225)
T COG0569           1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDDADAVVAATGN   76 (225)
T ss_pred             CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCCcCCEEEEeeCC
Confidence            47999999999999999999999999999999998776333  4444331        2333 5789999998875

>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional

Probab=96.79  E-value=0.012  Score=60.36  Aligned_cols=91  Identities=22%  Similarity=0.291  Sum_probs=69.9

Q ss_pred             cccCcEEEEEc-CChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce-eeC-----HHH----Hh--cCCcEEEEcC
Q psy4626          74 MFGGKQVVLCG-YGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVK-----LNE----VI--RTVDIVVTAT  140 (542)
Q Consensus        74 ~l~GktVvViG-~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~-v~~-----l~e----~l--~~aDvVi~at  140 (542)
                      ...|.+|+|.| .|.+|..+++.++..|++|++++.++.+...+...|.. +++     ..+    ..  .+.|++++++
T Consensus       138 ~~~g~~vlI~g~~g~ig~~~~~lak~~G~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~~~  217 (327)
T PRK10754        138 IKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGSAQKAQRAKKAGAWQVINYREENIVERVKEITGGKKVRVVYDSV  217 (327)
T ss_pred             CCCCCEEEEEeCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHCCCCEEEcCCCCcHHHHHHHHcCCCCeEEEEECC
Confidence            45799999996 79999999999999999999998888777666566653 222     111    22  3689999998


Q ss_pred             CCcccCCHHHHhccCCCeEEEeccCC
Q psy4626         141 GNKNVVTREHMDKMKNGCVVCNMGHS  166 (542)
Q Consensus       141 G~~~lI~~e~l~~mk~GailvnvG~g  166 (542)
                      |.. .+ .+.++.+++++.++.+|..
T Consensus       218 ~~~-~~-~~~~~~l~~~g~~v~~g~~  241 (327)
T PRK10754        218 GKD-TW-EASLDCLQRRGLMVSFGNA  241 (327)
T ss_pred             cHH-HH-HHHHHHhccCCEEEEEccC
Confidence            864 34 3688999999999998854

>cd08264 Zn_ADH_like2 Alcohol dehydrogenases of the MDR family

Probab=96.79  E-value=0.0065  Score=62.33  Aligned_cols=95  Identities=21%  Similarity=0.259  Sum_probs=68.6

Q ss_pred             HHHHHHhhcCccccCcEEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce-eeCHH-------HHhcCC
Q psy4626          63 IIDSLKRSTDVMFGGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVKLN-------EVIRTV  133 (542)
Q Consensus        63 ~~~ai~r~~~~~l~GktVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~-v~~l~-------e~l~~a  133 (542)
                      .|+++.++  ....|.+|+|.|. |++|..+++.++.+|++|+++.++    ..+...|.. +.+..       +...+.
T Consensus       151 a~~~l~~~--~~~~g~~vlI~g~~g~vg~~~~~~a~~~G~~v~~~~~~----~~~~~~g~~~~~~~~~~~~~l~~~~~~~  224 (325)
T cd08264         151 AYHALKTA--GLGPGETVVVFGASGNTGIFAVQLAKMMGAEVIAVSRK----DWLKEFGADEVVDYDEVEEKVKEITKMA  224 (325)
T ss_pred             HHHHHHhc--CCCCCCEEEEECCCchHHHHHHHHHHHcCCeEEEEeHH----HHHHHhCCCeeecchHHHHHHHHHhCCC
Confidence            35555442  3457999999998 999999999999999999988632    223344542 22211       112568


Q ss_pred             cEEEEcCCCcccCCHHHHhccCCCeEEEeccC
Q psy4626         134 DIVVTATGNKNVVTREHMDKMKNGCVVCNMGH  165 (542)
Q Consensus       134 DvVi~atG~~~lI~~e~l~~mk~GailvnvG~  165 (542)
                      |+|++++|.. .+ .+.++.+++++.++.+|.
T Consensus       225 d~vl~~~g~~-~~-~~~~~~l~~~g~~v~~g~  254 (325)
T cd08264         225 DVVINSLGSS-FW-DLSLSVLGRGGRLVTFGT  254 (325)
T ss_pred             CEEEECCCHH-HH-HHHHHhhccCCEEEEEec
Confidence            9999999874 44 478999999999999885

This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the clo

>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family

Probab=96.79  E-value=0.014  Score=59.93  Aligned_cols=119  Identities=20%  Similarity=0.301  Sum_probs=76.9

Q ss_pred             HHHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeC--CchhhhhhhcCCceee-----CHHH----Hh-
Q psy4626          63 IIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEI--DPICALQACMDGFSVV-----KLNE----VI-  130 (542)
Q Consensus        63 ~~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~--dp~r~~~A~~~G~~v~-----~l~e----~l-  130 (542)
                      .|+++.... ....|.+|+|.|.|.+|..+++.++.+|++|+++..  ++.+...+...|...+     +..+    .. 
T Consensus       152 a~~~l~~~~-~~~~g~~vlI~g~g~~g~~~~~la~~~G~~v~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~  230 (306)
T cd08258         152 AVHAVAERS-GIRPGDTVVVFGPGPIGLLAAQVAKLQGATVVVVGTEKDEVRLDVAKELGADAVNGGEEDLAELVNEITD  230 (306)
T ss_pred             HHHHHHHhc-CCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHhCCcccCCCcCCHHHHHHHHcC
Confidence            455543332 234789999999999999999999999999887633  3334443444454211     1111    12 


Q ss_pred             -cCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCCC---cccChHhhcCCCccee
Q psy4626         131 -RTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSN---TEIDVNSLRTPDLTWE  183 (542)
Q Consensus       131 -~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g~---~eid~~aL~~~~l~v~  183 (542)
                       +..|+++++.|....+ ...++.|++++.++.+|...   .++++..+..++++..
T Consensus       231 ~~~vd~vld~~g~~~~~-~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~  286 (306)
T cd08258         231 GDGADVVIECSGAVPAL-EQALELLRKGGRIVQVGIFGPLAASIDVERIIQKELSVI  286 (306)
T ss_pred             CCCCCEEEECCCChHHH-HHHHHHhhcCCEEEEEcccCCCCcccCHHHHhhcCcEEE
Confidence             3689999998754455 36788999999999888753   4445444433344333

This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous

>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein

Probab=96.77  E-value=0.01  Score=62.11  Aligned_cols=156  Identities=16%  Similarity=0.162  Sum_probs=92.7

Q ss_pred             hHHHHHHHHHhCCCEEEEEeCCchhhh-----hhhcCCceee-CHHHHhcCCcEEEEcCCCcccCC---HHHHhccCCCe
Q psy4626          88 VGKGCCQSLKGLGCVIYITEIDPICAL-----QACMDGFSVV-KLNEVIRTVDIVVTATGNKNVVT---REHMDKMKNGC  158 (542)
Q Consensus        88 IG~~vA~~l~~~Ga~Viv~d~dp~r~~-----~A~~~G~~v~-~l~e~l~~aDvVi~atG~~~lI~---~e~l~~mk~Ga  158 (542)
                      .|..+|+.|...|-.|++||+++.+..     .....|.... +..++++++|+||.+..+...+.   ...++.+++|.
T Consensus        31 gGspMArnLlkAGheV~V~Drnrsa~e~e~~e~LaeaGA~~AaS~aEAAa~ADVVIL~LPd~aaV~eVl~GLaa~L~~Ga  110 (341)
T TIGR01724        31 GGSRMAIEFAMAGHDVVLAEPNREFMSDDLWKKVEDAGVKVVSDDKEAAKHGEIHVLFTPFGKGTFSIARTIIEHVPENA  110 (341)
T ss_pred             CHHHHHHHHHHCCCEEEEEeCChhhhhhhhhHHHHHCCCeecCCHHHHHhCCCEEEEecCCHHHHHHHHHHHHhcCCCCC
Confidence            478999999999999999998875432     2445677654 57888999999999876544331   23567889999


Q ss_pred             EEEeccCCCcccChHhhcC------CCcceeeeccceeeEecCC--CCEEEEecCCCcccccCCCChhHHHhhHHHHHHH
Q psy4626         159 VVCNMGHSNTEIDVNSLRT------PDLTWEKVRSQVDHVIWPD--GKRIVLLAEGRLVNLSCSSLPSFVVSITACTQAL  230 (542)
Q Consensus       159 ilvnvG~g~~eid~~aL~~------~~l~v~~~~~~v~~y~~~d--g~~I~LLa~GrLvnl~~~thp~~vmd~sfa~q~l  230 (542)
                      ++|+++.-+.+.-...|..      +.+.+..-+|.    ..|.  ++..++++.+.......++          -.|+-
T Consensus       111 IVID~STIsP~t~~~~~e~~l~~~r~d~~v~s~HP~----~vP~~~~~~~~~~~~~~~~~~~~A~----------ee~i~  176 (341)
T TIGR01724       111 VICNTCTVSPVVLYYSLEKILRLKRTDVGISSMHPA----AVPGTPQHGHYVIGGKPTAGKEMAT----------EEQIS  176 (341)
T ss_pred             EEEECCCCCHHHHHHHHHHHhhcCccccCeeccCCC----CCCCCCCCceeeeccccccccccCC----------HHHHH
Confidence            9999997653333332321      11222111110    1222  4555777655533322221          12333


Q ss_pred             HHHHHhcCCCCCCCCccccCChhhHHHHHHh
Q psy4626         231 ALIELFNAPSGRYKSDVYLLPKKMDEYVASL  261 (542)
Q Consensus       231 a~~~L~~~~~~~~~~gv~~lp~~~d~~VA~l  261 (542)
                      ...+|.+.    .....|.+|.++-..|+.+
T Consensus       177 ~~~el~~~----~~~~~~~~pa~l~~~v~Dm  203 (341)
T TIGR01724       177 KCVELAKS----TGKKAYVVPADVTSAVADM  203 (341)
T ss_pred             HHHHHHHH----hCCCeeecchhhcchhhhH
Confidence            34455542    3445677777766666654

This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.

>COG3288 PntA NAD/NADP transhydrogenase alpha subunit [Energy production and conversion]

Probab=96.77  E-value=0.0019  Score=66.67  Aligned_cols=93  Identities=24%  Similarity=0.327  Sum_probs=73.4

Q ss_pred             ccccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCcee---------------eCH----------H
Q psy4626          73 VMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV---------------VKL----------N  127 (542)
Q Consensus        73 ~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v---------------~~l----------~  127 (542)
                      ...++.+++++|.|-+|...+...+-.|+-|...|..|.+..+-...|...               ++.          .
T Consensus       160 gtv~pA~vlv~G~Gvagl~aiata~~lG~iVt~rdlrm~~Keqv~s~Ga~f~~~~~ee~~gGYAk~ms~~~~~~q~~~~a  239 (356)
T COG3288         160 GTVSPAKVLVIGAGVAGLAAIATAVRLGAIVTARDLRMFKKEQVESLGAKFLAVEDEESAGGYAKEMSEEFIAKQAELVA  239 (356)
T ss_pred             ccccchhhhhhhHHHHHHHHHHHHhhcceEEehhhhhhHHhhhhhhcccccccccccccCCCccccCCHHHHHHHHHHHH
Confidence            356778999999999999999999999999999999998866544444322               221          1


Q ss_pred             HHhcCCcEEEEcC---C--CcccCCHHHHhccCCCeEEEeccC
Q psy4626         128 EVIRTVDIVVTAT---G--NKNVVTREHMDKMKNGCVVCNMGH  165 (542)
Q Consensus       128 e~l~~aDvVi~at---G--~~~lI~~e~l~~mk~GailvnvG~  165 (542)
                      +.+++.||||++.   |  .+.+++++..+.||||.+++..+.
T Consensus       240 ~~~~~~DivITTAlIPGrpAP~Lvt~~mv~sMkpGSViVDlAa  282 (356)
T COG3288         240 EQAKEVDIVITTALIPGRPAPKLVTAEMVASMKPGSVIVDLAA  282 (356)
T ss_pred             HHhcCCCEEEEecccCCCCCchhhHHHHHHhcCCCcEEEEehh
Confidence            2347999999964   4  567889999999999999998764

>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]

Probab=96.77  E-value=0.0062  Score=64.19  Aligned_cols=98  Identities=24%  Similarity=0.293  Sum_probs=73.8

Q ss_pred             CcEEEEEcCChhHHHHHHHHH-hCCC-EEEEEeCCchhhhhhh----cC-Cc---eeeCHHHHhcCCcEEEEcCC-Cccc
Q psy4626          77 GKQVVLCGYGEVGKGCCQSLK-GLGC-VIYITEIDPICALQAC----MD-GF---SVVKLNEVIRTVDIVVTATG-NKNV  145 (542)
Q Consensus        77 GktVvViG~G~IG~~vA~~l~-~~Ga-~Viv~d~dp~r~~~A~----~~-G~---~v~~l~e~l~~aDvVi~atG-~~~l  145 (542)
                      -++++|||+|..++.-++.++ -++. +|.+|+++|.......    .. +.   .+.+.++++++||+|++||- +.++
T Consensus       130 a~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l~~~~~~~v~a~~s~~~av~~aDiIvt~T~s~~Pi  209 (330)
T COG2423         130 ASTLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAARLRKRGGEAVGAADSAEEAVEGADIVVTATPSTEPV  209 (330)
T ss_pred             CcEEEEECCcHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHHHHhhcCccceeccCHHHHhhcCCEEEEecCCCCCe
Confidence            578999999999998888886 4565 8999999997654322    22 32   23467889999999999875 4466


Q ss_pred             CCHHHHhccCCCeEEEeccCC---CcccChHhhcC
Q psy4626         146 VTREHMDKMKNGCVVCNMGHS---NTEIDVNSLRT  177 (542)
Q Consensus       146 I~~e~l~~mk~GailvnvG~g---~~eid~~aL~~  177 (542)
                      +..   +.+++|..+..+|..   ..|+|.+.+..
T Consensus       210 l~~---~~l~~G~hI~aiGad~p~k~Eld~e~l~r  241 (330)
T COG2423         210 LKA---EWLKPGTHINAIGADAPGKRELDPEVLAR  241 (330)
T ss_pred             ecH---hhcCCCcEEEecCCCCcccccCCHHHHHh
Confidence            654   457899999999974   36888776653

>cd05288 PGDH Prostaglandin dehydrogenases

Probab=96.76  E-value=0.0077  Score=61.71  Aligned_cols=103  Identities=18%  Similarity=0.167  Sum_probs=74.4

Q ss_pred             HHHHHHHHhhcCccccCcEEEEEc-CChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhc-CCce-eeC-----HHH----
Q psy4626          61 ESIIDSLKRSTDVMFGGKQVVLCG-YGEVGKGCCQSLKGLGCVIYITEIDPICALQACM-DGFS-VVK-----LNE----  128 (542)
Q Consensus        61 ~s~~~ai~r~~~~~l~GktVvViG-~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~-~G~~-v~~-----l~e----  128 (542)
                      ...++++.+.. ....|.+|+|.| .|.+|..+++.++..|++|++++.++.+...+.. .|.. +++     ..+    
T Consensus       131 ~ta~~~l~~~~-~~~~~~~vlI~g~~g~ig~~~~~~a~~~G~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~~  209 (329)
T cd05288         131 LTAYFGLTEIG-KPKPGETVVVSAAAGAVGSVVGQIAKLLGARVVGIAGSDEKCRWLVEELGFDAAINYKTPDLAEALKE  209 (329)
T ss_pred             HHHHHHHHhcc-CCCCCCEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhhcCCceEEecCChhHHHHHHH
Confidence            34455544332 235789999999 5999999999999999999999888877665544 5543 222     111    


Q ss_pred             Hh-cCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCC
Q psy4626         129 VI-RTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHS  166 (542)
Q Consensus       129 ~l-~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g  166 (542)
                      .. .+.|++++++|.. .+ .+.++.+++++.++++|..
T Consensus       210 ~~~~~~d~vi~~~g~~-~~-~~~~~~l~~~G~~v~~g~~  246 (329)
T cd05288         210 AAPDGIDVYFDNVGGE-IL-DAALTLLNKGGRIALCGAI  246 (329)
T ss_pred             hccCCceEEEEcchHH-HH-HHHHHhcCCCceEEEEeec
Confidence            11 4689999999874 44 3678999999999998854

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=96.75  E-value=0.018  Score=64.04  Aligned_cols=236  Identities=18%  Similarity=0.208  Sum_probs=114.9

Q ss_pred             HHHHHHHhCCCEEEEEeC----CchhhhhhhcCCceeeCHHHHhcCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCC
Q psy4626          91 GCCQSLKGLGCVIYITEI----DPICALQACMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHS  166 (542)
Q Consensus        91 ~vA~~l~~~Ga~Viv~d~----dp~r~~~A~~~G~~v~~l~e~l~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g  166 (542)
                      ..++.|...|.+|+|=.-    ..+.-.+....|+.+++-+++. .+|+|+-.- . +  ..+.++.||+|..++..-+.
T Consensus        20 ~~v~~L~k~G~~V~VE~gAG~~a~fsD~~Y~~aGA~I~~~~~~~-~adiIlkV~-~-P--~~~e~~~l~~g~tli~~l~p   94 (511)
T TIGR00561        20 KTVQQLLKLGFDVLVETGAGAKASFADRAFESAGAGIVDGTLFW-QSDIILKVN-A-P--SDAEIAELPAGKALVSFIWP   94 (511)
T ss_pred             HHHHHHHhCCCEEEEECCCCcCCCcCHHHHHHcCCEEecccchh-cCCEEEEeC-C-C--CHHHHHhcCCCCEEEEEcCc
Confidence            456778889999777321    1111222344577776554444 689987532 1 1  24679999999999877665


Q ss_pred             C-cccChHhhcCCCcceeeeccceeeEecCCCCEEEEecCCCcccccCCCChhHHHhhHHHHHHHHHHHHhcC---CC--
Q psy4626         167 N-TEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIVLLAEGRLVNLSCSSLPSFVVSITACTQALALIELFNA---PS--  240 (542)
Q Consensus       167 ~-~eid~~aL~~~~l~v~~~~~~v~~y~~~dg~~I~LLa~GrLvnl~~~thp~~vmd~sfa~q~la~~~L~~~---~~--  240 (542)
                      . +.-.++.+.++.++...-.    .  .|   +  +-..++++-|..    +--+.-.  .-++...+.+..   +.  
T Consensus        95 ~~n~~ll~~l~~k~it~ia~E----~--vp---r--israq~~d~lss----ma~iAGy--~Avi~Aa~~lgr~~~g~~t  157 (511)
T TIGR00561        95 AQNPELMEKLAAKNITVLAMD----A--VP---R--ISRAQKLDALSS----MANIAGY--RAIIEAAHEFGRFFTGQIT  157 (511)
T ss_pred             cCCHHHHHHHHHcCCEEEEee----c--cc---c--cccCCccCcchh----hHHHHHH--HHHHHHHHHhhhhcCCcee
Confidence            3 3333455555544433211    0  01   0  001122222221    1111111  111122222221   00  


Q ss_pred             --CCCCC-ccccCChhhHHHHHHhcCCccccc-----cccccHHHHhhcCCC--CCCCCCCCccccCCeeeee-------
Q psy4626         241 --GRYKS-DVYLLPKKMDEYVASLHLPTFDAH-----LTELSDEQAKYMGLN--KAGPFKPSYYSMDGFSVVK-------  303 (542)
Q Consensus       241 --~~~~~-gv~~lp~~~d~~VA~l~L~~lg~~-----i~~lt~~~a~~lg~~--e~~p~~a~ea~mdG~~v~~-------  303 (542)
                        +..++ .+..+-.-.-=..|-..+..+|..     ...-..++++-||+.  ++++.. -...-+||...-       
T Consensus       158 aag~vp~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~lGa~~v~v~~~e-~g~~~~gYa~~~s~~~~~~  236 (511)
T TIGR00561       158 AAGKVPPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLELDFKE-EGGSGDGYAKVMSEEFIAA  236 (511)
T ss_pred             cCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeccccc-cccccccceeecCHHHHHH
Confidence              01111 111111110001111122233331     111234566777774  344322 122345665432       


Q ss_pred             ----hhhhcccCcEEEEcc---CCCC--ccCHhHHhcCCCCcEEEccC---CCCcccc
Q psy4626         304 ----LNEVIRTVDIVVTAT---GNKN--VVTREHMDKMKNGCVVCNMG---HSNTEID  349 (542)
Q Consensus       304 ----~~~a~~~~d~~~t~t---g~~~--vi~~~~~~~mk~gail~n~g---h~~~Ei~  349 (542)
                          +.+.++.+||+|++.   |.+.  +|+++.++.||+|+++++.+   .++.|.-
T Consensus       237 ~~~~~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVDlA~d~GGn~E~t  294 (511)
T TIGR00561       237 EMELFAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVDLAAEQGGNCEYT  294 (511)
T ss_pred             HHHHHHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEEeeeCCCCCEEEe
Confidence                345678999999988   7655  89999999999999999875   2355554

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]

Probab=96.75  E-value=0.0081  Score=64.55  Aligned_cols=96  Identities=22%  Similarity=0.321  Sum_probs=68.7

Q ss_pred             CccccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCch------------------hhhh-hhcCCceeeCHHHHh-c
Q psy4626          72 DVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPI------------------CALQ-ACMDGFSVVKLNEVI-R  131 (542)
Q Consensus        72 ~~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~------------------r~~~-A~~~G~~v~~l~e~l-~  131 (542)
                      +..+.|+||+|-|+|++|+-.|+.|...|++|++++.++.                  +... ....|.+.++-++.+ .
T Consensus       202 g~~l~G~rVaVQG~GNVg~~aa~~l~~~GAkvva~sds~g~i~~~~Gld~~~l~~~~~~~~~v~~~~ga~~i~~~e~~~~  281 (411)
T COG0334         202 GDDLEGARVAVQGFGNVGQYAAEKLHELGAKVVAVSDSKGGIYDEDGLDVEALLELKERRGSVAEYAGAEYITNEELLEV  281 (411)
T ss_pred             CCCcCCCEEEEECccHHHHHHHHHHHHcCCEEEEEEcCCCceecCCCCCHHHHHHHhhhhhhHHhhcCceEccccccccc
Confidence            3348999999999999999999999999999999876654                  2111 122344555556665 5


Q ss_pred             CCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCCCcc
Q psy4626         132 TVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTE  169 (542)
Q Consensus       132 ~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g~~e  169 (542)
                      .|||++-|. ..+.|+.+....++-. +++-.+.++.+
T Consensus       282 ~cDIl~PcA-~~n~I~~~na~~l~ak-~V~EgAN~P~t  317 (411)
T COG0334         282 DCDILIPCA-LENVITEDNADQLKAK-IVVEGANGPTT  317 (411)
T ss_pred             cCcEEcccc-cccccchhhHHHhhhc-EEEeccCCCCC
Confidence            799998864 4458888888888776 45554444433

>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating

Probab=96.72  E-value=0.0043  Score=68.40  Aligned_cols=86  Identities=12%  Similarity=0.238  Sum_probs=64.8

Q ss_pred             EEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcC---C--ce-eeCHHHHh---cCCcEEEEcCCC----cccC
Q psy4626          80 VVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMD---G--FS-VVKLNEVI---RTVDIVVTATGN----KNVV  146 (542)
Q Consensus        80 VvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~---G--~~-v~~l~e~l---~~aDvVi~atG~----~~lI  146 (542)
                      ++|||.|.+|..+|+.+...|.+|+++|+++.+.......   |  +. ..++++++   +.+|+|+.+.-.    ..++
T Consensus         2 IG~IGLG~MG~~mA~nL~~~G~~V~v~drt~~~~~~l~~~~~~g~~~~~~~s~~e~v~~l~~~dvIil~v~~~~~v~~Vi   81 (467)
T TIGR00873         2 IGVIGLAVMGSNLALNMADHGFTVSVYNRTPEKTDEFLAEHAKGKKIVGAYSIEEFVQSLERPRKIMLMVKAGAPVDAVI   81 (467)
T ss_pred             EEEEeeHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHhhccCCCCceecCCHHHHHhhcCCCCEEEEECCCcHHHHHHH
Confidence            7999999999999999999999999999999877654433   2  22 23555544   578988887533    2334


Q ss_pred             CHHHHhccCCCeEEEeccCC
Q psy4626         147 TREHMDKMKNGCVVCNMGHS  166 (542)
Q Consensus       147 ~~e~l~~mk~GailvnvG~g  166 (542)
                       .+.+..+++|.++++.|..
T Consensus        82 -~~l~~~L~~g~iIID~gns  100 (467)
T TIGR00873        82 -NQLLPLLEKGDIIIDGGNS  100 (467)
T ss_pred             -HHHHhhCCCCCEEEECCCc
Confidence             3456678899999999865

This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.

>KOG0409|consensus

Probab=96.72  E-value=0.0032  Score=64.94  Aligned_cols=69  Identities=19%  Similarity=0.226  Sum_probs=60.4

Q ss_pred             cCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceee-CHHHHhcCCcEEEEcCCCcc
Q psy4626          76 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVV-KLNEVIRTVDIVVTATGNKN  144 (542)
Q Consensus        76 ~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~-~l~e~l~~aDvVi~atG~~~  144 (542)
                      .-++++.||.|.+|..++..|-..|-+|+|||++..+..+-...|.++. ++.|+.+.+|+||++.+++.
T Consensus        34 s~~~iGFIGLG~MG~~M~~nLik~G~kVtV~dr~~~k~~~f~~~Ga~v~~sPaeVae~sDvvitmv~~~~  103 (327)
T KOG0409|consen   34 SKTRIGFIGLGNMGSAMVSNLIKAGYKVTVYDRTKDKCKEFQEAGARVANSPAEVAEDSDVVITMVPNPK  103 (327)
T ss_pred             ccceeeEEeeccchHHHHHHHHHcCCEEEEEeCcHHHHHHHHHhchhhhCCHHHHHhhcCEEEEEcCChH
Confidence            4679999999999999999999999999999999988777677788764 67899999999999877543

>cd05281 TDH Threonine dehydrogenase

Probab=96.72  E-value=0.0042  Score=64.55  Aligned_cols=91  Identities=23%  Similarity=0.379  Sum_probs=70.4

Q ss_pred             ccCcEEEEEcCChhHHHHHHHHHhCCC-EEEEEeCCchhhhhhhcCCce-eeC-----HH---HHh--cCCcEEEEcCCC
Q psy4626          75 FGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMDGFS-VVK-----LN---EVI--RTVDIVVTATGN  142 (542)
Q Consensus        75 l~GktVvViG~G~IG~~vA~~l~~~Ga-~Viv~d~dp~r~~~A~~~G~~-v~~-----l~---e~l--~~aDvVi~atG~  142 (542)
                      .+|.+|+|.|.|.+|..+++.++.+|+ +|++++.++.+...+...|.+ +++     ..   +..  ++.|+++++.|.
T Consensus       162 ~~g~~vlV~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vd~vld~~g~  241 (341)
T cd05281         162 VSGKSVLITGCGPIGLMAIAVAKAAGASLVIASDPNPYRLELAKKMGADVVINPREEDVVEVKSVTDGTGVDVVLEMSGN  241 (341)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCcceeeCcccccHHHHHHHcCCCCCCEEEECCCC
Confidence            479999999999999999999999999 798887777776655566653 221     11   112  368999999987


Q ss_pred             cccCCHHHHhccCCCeEEEeccCC
Q psy4626         143 KNVVTREHMDKMKNGCVVCNMGHS  166 (542)
Q Consensus       143 ~~lI~~e~l~~mk~GailvnvG~g  166 (542)
                      ...+. +.++.+++++.++.+|..
T Consensus       242 ~~~~~-~~~~~l~~~G~~v~~g~~  264 (341)
T cd05281         242 PKAIE-QGLKALTPGGRVSILGLP  264 (341)
T ss_pred             HHHHH-HHHHHhccCCEEEEEccC
Confidence            66664 678999999999988754

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=96.71  E-value=0.0034  Score=59.19  Aligned_cols=88  Identities=16%  Similarity=0.157  Sum_probs=58.0

Q ss_pred             ccccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCC-ceee--CHH-HHhcCCcEEEEcCCCcccCCH
Q psy4626          73 VMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDG-FSVV--KLN-EVIRTVDIVVTATGNKNVVTR  148 (542)
Q Consensus        73 ~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G-~~v~--~l~-e~l~~aDvVi~atG~~~lI~~  148 (542)
                      ..+.|++|+|+|.|.+|...++.|...|++|++++  |....+....+ ..+.  .++ +-+.++|+||.+|++.. +|.
T Consensus         9 l~l~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIs--p~~~~~l~~l~~i~~~~~~~~~~dl~~a~lViaaT~d~e-~N~   85 (157)
T PRK06719          9 FNLHNKVVVIIGGGKIAYRKASGLKDTGAFVTVVS--PEICKEMKELPYITWKQKTFSNDDIKDAHLIYAATNQHA-VNM   85 (157)
T ss_pred             EEcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEc--CccCHHHHhccCcEEEecccChhcCCCceEEEECCCCHH-HHH
Confidence            46789999999999999999999999999999995  43222222222 2221  122 23688999999997754 443


Q ss_pred             HHHhccCCCeEEEecc
Q psy4626         149 EHMDKMKNGCVVCNMG  164 (542)
Q Consensus       149 e~l~~mk~GailvnvG  164 (542)
                      ......+.+ .++|+.
T Consensus        86 ~i~~~a~~~-~~vn~~  100 (157)
T PRK06719         86 MVKQAAHDF-QWVNVV  100 (157)
T ss_pred             HHHHHHHHC-CcEEEC
Confidence            333333444 356644

>TIGR00518 alaDH alanine dehydrogenase

Probab=96.69  E-value=0.031  Score=59.84  Aligned_cols=221  Identities=14%  Similarity=0.169  Sum_probs=116.2

Q ss_pred             HHHHHHHhCCCEEEEEeC----CchhhhhhhcCCceee-CHHHHhcCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccC
Q psy4626          91 GCCQSLKGLGCVIYITEI----DPICALQACMDGFSVV-KLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGH  165 (542)
Q Consensus        91 ~vA~~l~~~Ga~Viv~d~----dp~r~~~A~~~G~~v~-~l~e~l~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~  165 (542)
                      ..++.|...|.+|++=.-    .-+.-.+-...|+.++ +.+++++ +|+|+-.- .  . ..+.++.+++|.+++..-+
T Consensus        21 ~~v~~l~~~g~~v~vE~gaG~~~~~~D~~Y~~aGa~i~~~~~~~~~-~dii~~Vk-~--p-~~~~~~~~~~g~~l~~~~~   95 (370)
T TIGR00518        21 AGVAELTSRGHEVLVEAGAGEGSGFTDAAYKAAGAELVATAKQVWD-AELVLKVK-E--P-LPEEYGYLRHGQILFTYLH   95 (370)
T ss_pred             HHHHHHHhCCCEEEEECCCCcCCCCChHHHHHCCCEEecCHHHHhc-CCEEEEeC-C--C-CHHHHhhcCCCcEEEEEec
Confidence            346678888999988421    1122223445688776 5778885 99997532 1  2 2467899999999887665


Q ss_pred             CC-cccChHhhcCCCcceeeeccceeeEecCCCCEEEEecCCCcccccCCCChhHHHhhHHHHHHHHHHHHhcCCCCC--
Q psy4626         166 SN-TEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIVLLAEGRLVNLSCSSLPSFVVSITACTQALALIELFNAPSGR--  242 (542)
Q Consensus       166 g~-~eid~~aL~~~~l~v~~~~~~v~~y~~~dg~~I~LLa~GrLvnl~~~thp~~vmd~sfa~q~la~~~L~~~~~~~--  242 (542)
                      .. .....+.+.++.++...       |.     .+. .++|.++-|..-   +++ .-..|. .++..++.+.-.++  
T Consensus        96 ~a~~~~~~~~l~~~~~t~i~-------~e-----~i~-~~~~~~~~l~~~---~~i-aG~~av-~~aa~~~~~~~~g~~~  157 (370)
T TIGR00518        96 LAAERALTDALLDSGTTAIA-------YE-----TVQ-TADGALPLLAPM---SEV-AGRLAA-QVGAYHLEKTQGGRGV  157 (370)
T ss_pred             cCCCHHHHHHHHHcCCeEEE-------ee-----eee-ccCCCCccccch---hHH-HHHHHH-HHHHHHhHhhcCCcce
Confidence            53 22223444433332221       11     111 233444333221   011 111111 22223332211000  


Q ss_pred             CCCccccCChhhHHHHHHhcCCcccc-ccccccHHHHhhcCCC----CCCCCCCCcc--ccCCee------eeehhhhcc
Q psy4626         243 YKSDVYLLPKKMDEYVASLHLPTFDA-HLTELSDEQAKYMGLN----KAGPFKPSYY--SMDGFS------VVKLNEVIR  309 (542)
Q Consensus       243 ~~~gv~~lp~~~d~~VA~l~L~~lg~-~i~~lt~~~a~~lg~~----e~~p~~a~ea--~mdG~~------v~~~~~a~~  309 (542)
                      +-.+.-.++..        ..-.+|. .++....+.++.+|+.    +.+|-+.-++  .+.++-      ...++++++
T Consensus       158 ~~~~~~~l~~~--------~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~~v~~~~~~~~~l~~~l~  229 (370)
T TIGR00518       158 LLGGVPGVEPG--------DVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEFGGRIHTRYSNAYEIEDAVK  229 (370)
T ss_pred             eecCCCCCCCc--------eEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcCceeEeccCCHHHHHHHHc
Confidence            01111111111        1223333 6777788888888872    3333332211  122210      024678899


Q ss_pred             cCcEEEEcc---CC--CCccCHhHHhcCCCCcEEEccC
Q psy4626         310 TVDIVVTAT---GN--KNVVTREHMDKMKNGCVVCNMG  342 (542)
Q Consensus       310 ~~d~~~t~t---g~--~~vi~~~~~~~mk~gail~n~g  342 (542)
                      .+|+||+++   |.  +.+|+.+.++.||+|++++|.+
T Consensus       230 ~aDvVI~a~~~~g~~~p~lit~~~l~~mk~g~vIvDva  267 (370)
T TIGR00518       230 RADLLIGAVLIPGAKAPKLVSNSLVAQMKPGAVIVDVA  267 (370)
T ss_pred             cCCEEEEccccCCCCCCcCcCHHHHhcCCCCCEEEEEe
Confidence            999999987   44  5679999999999999999988

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family

Probab=96.69  E-value=0.011  Score=62.20  Aligned_cols=103  Identities=24%  Similarity=0.333  Sum_probs=73.9

Q ss_pred             HHHHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCCCE-EEEEeCCchhhhhhhcCCce-eeC-----HHH----Hh
Q psy4626          62 SIIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCV-IYITEIDPICALQACMDGFS-VVK-----LNE----VI  130 (542)
Q Consensus        62 s~~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga~-Viv~d~dp~r~~~A~~~G~~-v~~-----l~e----~l  130 (542)
                      +.|+++.... ....|.+|+|.|.|.+|..+++.++.+|++ |++++.++.+...+...|.. +++     ..+    ..
T Consensus       174 tA~~~l~~~~-~~~~g~~VlI~g~g~vG~~~~~lak~~G~~~vi~~~~s~~~~~~~~~~g~~~v~~~~~~~~~~~l~~~~  252 (367)
T cd08263         174 TAYGALKHAA-DVRPGETVAVIGVGGVGSSAIQLAKAFGASPIIAVDVRDEKLAKAKELGATHTVNAAKEDAVAAIREIT  252 (367)
T ss_pred             HHHHHHHhcc-cCCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHhCCceEecCCcccHHHHHHHHh
Confidence            3444543332 234689999999999999999999999997 88888777776555555543 222     111    22


Q ss_pred             --cCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCC
Q psy4626         131 --RTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHS  166 (542)
Q Consensus       131 --~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g  166 (542)
                        ...|+|+++.|....+ .+.++.|++++.++.+|..
T Consensus       253 ~~~~~d~vld~vg~~~~~-~~~~~~l~~~G~~v~~g~~  289 (367)
T cd08263         253 GGRGVDVVVEALGKPETF-KLALDVVRDGGRAVVVGLA  289 (367)
T ss_pred             CCCCCCEEEEeCCCHHHH-HHHHHHHhcCCEEEEEccC
Confidence              4589999998875344 4688999999999998754

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu

>TIGR00692 tdh L-threonine 3-dehydrogenase

Probab=96.69  E-value=0.0062  Score=63.24  Aligned_cols=92  Identities=20%  Similarity=0.300  Sum_probs=70.8

Q ss_pred             cccCcEEEEEcCChhHHHHHHHHHhCCCE-EEEEeCCchhhhhhhcCCce-eeC-----HHH----Hh--cCCcEEEEcC
Q psy4626          74 MFGGKQVVLCGYGEVGKGCCQSLKGLGCV-IYITEIDPICALQACMDGFS-VVK-----LNE----VI--RTVDIVVTAT  140 (542)
Q Consensus        74 ~l~GktVvViG~G~IG~~vA~~l~~~Ga~-Viv~d~dp~r~~~A~~~G~~-v~~-----l~e----~l--~~aDvVi~at  140 (542)
                      ...|++++|.|.|.+|..+++.++.+|++ |++++.++.+...+...|.. +++     ..+    ..  ++.|+++++.
T Consensus       159 ~~~g~~vlI~~~g~vg~~a~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~~~~~d~vld~~  238 (340)
T TIGR00692       159 PISGKSVLVTGAGPIGLMAIAVAKASGAYPVIVSDPNEYRLELAKKMGATYVVNPFKEDVVKEVADLTDGEGVDVFLEMS  238 (340)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCcEEEcccccCHHHHHHHhcCCCCCCEEEECC
Confidence            34799999999999999999999999996 88888778777666666653 222     111    22  4689999998


Q ss_pred             CCcccCCHHHHhccCCCeEEEeccCC
Q psy4626         141 GNKNVVTREHMDKMKNGCVVCNMGHS  166 (542)
Q Consensus       141 G~~~lI~~e~l~~mk~GailvnvG~g  166 (542)
                      |....+. +.++.|++++.++..|..
T Consensus       239 g~~~~~~-~~~~~l~~~g~~v~~g~~  263 (340)
T TIGR00692       239 GAPKALE-QGLQAVTPGGRVSLLGLP  263 (340)
T ss_pred             CCHHHHH-HHHHhhcCCCEEEEEccC
Confidence            7655553 678999999999998854

E. coli His-90 modulates substrate specificity and is believed part of the active site.

>cd05282 ETR_like 2-enoyl thioester reductase-like

Probab=96.68  E-value=0.012  Score=59.90  Aligned_cols=91  Identities=18%  Similarity=0.141  Sum_probs=70.0

Q ss_pred             cccCcEEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce-eeC-----HHH----Hh--cCCcEEEEcC
Q psy4626          74 MFGGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVK-----LNE----VI--RTVDIVVTAT  140 (542)
Q Consensus        74 ~l~GktVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~-v~~-----l~e----~l--~~aDvVi~at  140 (542)
                      ...|.+|+|.|. |.+|..+++.++.+|++|+++..++.+...+...|.+ +.+     ..+    ..  ++.|++++++
T Consensus       136 ~~~~~~vlI~g~~~~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~~~  215 (323)
T cd05282         136 LPPGDWVIQNAANSAVGRMLIQLAKLLGFKTINVVRRDEQVEELKALGADEVIDSSPEDLAQRVKEATGGAGARLALDAV  215 (323)
T ss_pred             CCCCCEEEEcccccHHHHHHHHHHHHCCCeEEEEecChHHHHHHHhcCCCEEecccchhHHHHHHHHhcCCCceEEEECC
Confidence            357899999987 8999999999999999999988777766666556653 221     111    11  4699999999


Q ss_pred             CCcccCCHHHHhccCCCeEEEeccCC
Q psy4626         141 GNKNVVTREHMDKMKNGCVVCNMGHS  166 (542)
Q Consensus       141 G~~~lI~~e~l~~mk~GailvnvG~g  166 (542)
                      |....  ...++.+++++.++.+|..
T Consensus       216 g~~~~--~~~~~~l~~~g~~v~~g~~  239 (323)
T cd05282         216 GGESA--TRLARSLRPGGTLVNYGLL  239 (323)
T ss_pred             CCHHH--HHHHHhhCCCCEEEEEccC
Confidence            87654  3678999999999988854

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman

>PRK05396 tdh L-threonine 3-dehydrogenase; Validated

Probab=96.68  E-value=0.0064  Score=63.06  Aligned_cols=92  Identities=21%  Similarity=0.339  Sum_probs=70.5

Q ss_pred             ccCcEEEEEcCChhHHHHHHHHHhCCC-EEEEEeCCchhhhhhhcCCce-eeC-----HHH----Hh--cCCcEEEEcCC
Q psy4626          75 FGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMDGFS-VVK-----LNE----VI--RTVDIVVTATG  141 (542)
Q Consensus        75 l~GktVvViG~G~IG~~vA~~l~~~Ga-~Viv~d~dp~r~~~A~~~G~~-v~~-----l~e----~l--~~aDvVi~atG  141 (542)
                      ..|++|+|.|.|.+|..+++.++.+|+ +|++++.++.+...+...|.+ +.+     ..+    ..  ++.|+|++|.|
T Consensus       162 ~~g~~vlV~~~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~d~v~d~~g  241 (341)
T PRK05396        162 LVGEDVLITGAGPIGIMAAAVAKHVGARHVVITDVNEYRLELARKMGATRAVNVAKEDLRDVMAELGMTEGFDVGLEMSG  241 (341)
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhCCcEEecCccccHHHHHHHhcCCCCCCEEEECCC
Confidence            479999999999999999999999999 688887777666555555653 221     112    12  47999999888


Q ss_pred             CcccCCHHHHhccCCCeEEEeccCCC
Q psy4626         142 NKNVVTREHMDKMKNGCVVCNMGHSN  167 (542)
Q Consensus       142 ~~~lI~~e~l~~mk~GailvnvG~g~  167 (542)
                      ....+. +.++.+++++.+++.|..+
T Consensus       242 ~~~~~~-~~~~~l~~~G~~v~~g~~~  266 (341)
T PRK05396        242 APSAFR-QMLDNMNHGGRIAMLGIPP  266 (341)
T ss_pred             CHHHHH-HHHHHHhcCCEEEEEecCC
Confidence            655554 6788999999999998654

>PRK13304 L-aspartate dehydrogenase; Reviewed

Probab=96.66  E-value=0.0035  Score=63.92  Aligned_cols=85  Identities=16%  Similarity=0.201  Sum_probs=58.2

Q ss_pred             EEEEEcCChhHHHHHHHHHhC--CCE-EEEEeCCchhhhhhh-cCCce-eeCHHHHhcCCcEEEEcCCCcccCCHHHHhc
Q psy4626          79 QVVLCGYGEVGKGCCQSLKGL--GCV-IYITEIDPICALQAC-MDGFS-VVKLNEVIRTVDIVVTATGNKNVVTREHMDK  153 (542)
Q Consensus        79 tVvViG~G~IG~~vA~~l~~~--Ga~-Viv~d~dp~r~~~A~-~~G~~-v~~l~e~l~~aDvVi~atG~~~lI~~e~l~~  153 (542)
                      +++|+|+|.||+.+++.+...  +.+ +.++|+++.+..... ..|.. +.++++++.++|+|++|++.. ....-....
T Consensus         3 rIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~~~~~~~~~~~~ell~~~DvVvi~a~~~-~~~~~~~~a   81 (265)
T PRK13304          3 KIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKAENLASKTGAKACLSIDELVEDVDLVVECASVN-AVEEVVPKS   81 (265)
T ss_pred             EEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHHhcCCeeECCHHHHhcCCCEEEEcCChH-HHHHHHHHH
Confidence            799999999999999988765  465 557899887755432 33433 356788888999999998643 332233445


Q ss_pred             cCCCeEEEecc
Q psy4626         154 MKNGCVVCNMG  164 (542)
Q Consensus       154 mk~GailvnvG  164 (542)
                      ++.|.-++..+
T Consensus        82 l~~Gk~Vvv~s   92 (265)
T PRK13304         82 LENGKDVIIMS   92 (265)
T ss_pred             HHcCCCEEEEc
Confidence            56665554443

>cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family

Probab=96.66  E-value=0.018  Score=58.82  Aligned_cols=100  Identities=23%  Similarity=0.315  Sum_probs=72.5

Q ss_pred             HHHHHHhhcCccccCcEEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce-eeCHH---HH---hcCCc
Q psy4626          63 IIDSLKRSTDVMFGGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVKLN---EV---IRTVD  134 (542)
Q Consensus        63 ~~~ai~r~~~~~l~GktVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~-v~~l~---e~---l~~aD  134 (542)
                      .|+++..+  ....|.+++|.|. |.+|+.+++.++..|++|+++..++.+.......|.. +.+.+   +.   +.+.|
T Consensus       151 a~~~l~~~--~~~~~~~vlI~ga~g~vG~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  228 (332)
T cd08259         151 AVHALKRA--GVKKGDTVLVTGAGGGVGIHAIQLAKALGARVIAVTRSPEKLKILKELGADYVIDGSKFSEDVKKLGGAD  228 (332)
T ss_pred             HHHHHHHh--CCCCCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHcCCcEEEecHHHHHHHHhccCCC
Confidence            34554442  3457899999997 8999999999999999999988877766555444432 22221   22   13689


Q ss_pred             EEEEcCCCcccCCHHHHhccCCCeEEEeccCC
Q psy4626         135 IVVTATGNKNVVTREHMDKMKNGCVVCNMGHS  166 (542)
Q Consensus       135 vVi~atG~~~lI~~e~l~~mk~GailvnvG~g  166 (542)
                      +++++.|... + .+.++.+++++.++..|..
T Consensus       229 ~v~~~~g~~~-~-~~~~~~~~~~g~~v~~g~~  258 (332)
T cd08259         229 VVIELVGSPT-I-EESLRSLNKGGRLVLIGNV  258 (332)
T ss_pred             EEEECCChHH-H-HHHHHHhhcCCEEEEEcCC
Confidence            9999988654 3 4678889999999988854

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES.

>COG0281 SfcA Malic enzyme [Energy production and conversion]

Probab=96.65  E-value=0.012  Score=63.27  Aligned_cols=121  Identities=16%  Similarity=0.245  Sum_probs=88.7

Q ss_pred             HHhHHHHHHHHHHHHH---hhcCccccCcEEEEEcCChhHHHHHHHHHhCCC---EEEEEeCCchh-------------h
Q psy4626          53 FDNLYMCRESIIDSLK---RSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGC---VIYITEIDPIC-------------A  113 (542)
Q Consensus        53 fd~~~g~~~s~~~ai~---r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga---~Viv~d~dp~r-------------~  113 (542)
                      .|..+||+--+..++.   +.++..+...++++.|+|.-|.+++..+++.|+   +|+++|+...-             .
T Consensus       172 hDDqqGTaiv~lA~llnalk~~gk~l~d~kiv~~GAGAAgiaia~~l~~~g~~~~~i~~~D~~G~l~~~r~~~~~~~~k~  251 (432)
T COG0281         172 HDDQQGTAIVTLAALLNALKLTGKKLKDQKIVINGAGAAGIAIADLLVAAGVKEENIFVVDRKGLLYDGREDLTMNQKKY  251 (432)
T ss_pred             cccccHHHHHHHHHHHHHHHHhCCCccceEEEEeCCcHHHHHHHHHHHHhCCCcccEEEEecCCcccCCCcccccchHHH
Confidence            3777788765555544   345778889999999999999999999999999   69999864211             0


Q ss_pred             hhhh-cCCceeeCHHHHhcCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCCCcccChHhhc
Q psy4626         114 LQAC-MDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLR  176 (542)
Q Consensus       114 ~~A~-~~G~~v~~l~e~l~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g~~eid~~aL~  176 (542)
                      ..+. ..+.. .. ++++.++|+++-++|. ++++++.++.|.+.-++.-.+-...|+..+.+.
T Consensus       252 ~~a~~~~~~~-~~-~~~~~~adv~iG~S~~-G~~t~e~V~~Ma~~PiIfalaNP~pEi~Pe~a~  312 (432)
T COG0281         252 AKAIEDTGER-TL-DLALAGADVLIGVSGV-GAFTEEMVKEMAKHPIIFALANPTPEITPEDAK  312 (432)
T ss_pred             HHHHhhhccc-cc-cccccCCCEEEEcCCC-CCcCHHHHHHhccCCEEeecCCCCccCCHHHHh
Confidence            1110 11100 10 3467899999999988 999999999998888888777766777777654

>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]

Probab=96.64  E-value=0.0063  Score=60.01  Aligned_cols=88  Identities=20%  Similarity=0.219  Sum_probs=61.8

Q ss_pred             cEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhh--hcCC--ceeeCHHHHhcCCcEEEEcCCCcccCC--HHHH
Q psy4626          78 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQA--CMDG--FSVVKLNEVIRTVDIVVTATGNKNVVT--REHM  151 (542)
Q Consensus        78 ktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A--~~~G--~~v~~l~e~l~~aDvVi~atG~~~lI~--~e~l  151 (542)
                      ++++|+|.|.||.++|.++...|.+|++-.++..+...+  ...+  ....+.+++.+.+|||+.+.--.....  ++..
T Consensus         2 ~~~~i~GtGniG~alA~~~a~ag~eV~igs~r~~~~~~a~a~~l~~~i~~~~~~dA~~~aDVVvLAVP~~a~~~v~~~l~   81 (211)
T COG2085           2 MIIAIIGTGNIGSALALRLAKAGHEVIIGSSRGPKALAAAAAALGPLITGGSNEDAAALADVVVLAVPFEAIPDVLAELR   81 (211)
T ss_pred             cEEEEeccChHHHHHHHHHHhCCCeEEEecCCChhHHHHHHHhhccccccCChHHHHhcCCEEEEeccHHHHHhHHHHHH
Confidence            479999999999999999999999999985554443322  2223  334567888999999999875332221  3334


Q ss_pred             hccCCCeEEEeccCC
Q psy4626         152 DKMKNGCVVCNMGHS  166 (542)
Q Consensus       152 ~~mk~GailvnvG~g  166 (542)
                      +.+. |.++|.+...
T Consensus        82 ~~~~-~KIvID~tnp   95 (211)
T COG2085          82 DALG-GKIVIDATNP   95 (211)
T ss_pred             HHhC-CeEEEecCCC
Confidence            4444 8899887753

>cd05286 QOR2 Quinone oxidoreductase (QOR)

Probab=96.61  E-value=0.01  Score=59.44  Aligned_cols=92  Identities=24%  Similarity=0.302  Sum_probs=70.6

Q ss_pred             cccCcEEEEEc-CChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce-eeC-----HHH----Hh--cCCcEEEEcC
Q psy4626          74 MFGGKQVVLCG-YGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVK-----LNE----VI--RTVDIVVTAT  140 (542)
Q Consensus        74 ~l~GktVvViG-~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~-v~~-----l~e----~l--~~aDvVi~at  140 (542)
                      ...|++|+|.| .|.+|..+++.++.+|++|++++.++.+...+...|.. +.+     ..+    ..  ++.|+++++.
T Consensus       134 ~~~g~~vlI~g~~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~~~  213 (320)
T cd05286         134 VKPGDTVLVHAAAGGVGLLLTQWAKALGATVIGTVSSEEKAELARAAGADHVINYRDEDFVERVREITGGRGVDVVYDGV  213 (320)
T ss_pred             CCCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHCCCCEEEeCCchhHHHHHHHHcCCCCeeEEEECC
Confidence            45799999999 59999999999999999999998888777666555653 221     111    12  3689999998


Q ss_pred             CCcccCCHHHHhccCCCeEEEeccCCC
Q psy4626         141 GNKNVVTREHMDKMKNGCVVCNMGHSN  167 (542)
Q Consensus       141 G~~~lI~~e~l~~mk~GailvnvG~g~  167 (542)
                      |.. .+ ...++.+++++.++.+|..+
T Consensus       214 ~~~-~~-~~~~~~l~~~g~~v~~g~~~  238 (320)
T cd05286         214 GKD-TF-EGSLDSLRPRGTLVSFGNAS  238 (320)
T ss_pred             CcH-hH-HHHHHhhccCcEEEEEecCC
Confidence            864 44 36899999999999988653

Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone

>PRK13403 ketol-acid reductoisomerase; Provisional

Probab=96.61  E-value=0.00072  Score=70.78  Aligned_cols=93  Identities=19%  Similarity=0.217  Sum_probs=73.6

Q ss_pred             HHHHhcCCcccc----ccccccHHHHhhcCCCC---CCCCCCC-ccccCCeeeeehhhhcccCcEEEEcc---CCCCccC
Q psy4626         257 YVASLHLPTFDA----HLTELSDEQAKYMGLNK---AGPFKPS-YYSMDGFSVVKLNEVIRTVDIVVTAT---GNKNVVT  325 (542)
Q Consensus       257 ~VA~l~L~~lg~----~i~~lt~~~a~~lg~~e---~~p~~a~-ea~mdG~~v~~~~~a~~~~d~~~t~t---g~~~vi~  325 (542)
                      ....++.+++|+    .+++-.+.+++.+|+..   .+|.++. .|..+|+++.+++|+++.||+|++..   .++++++
T Consensus        10 ~~~~LkgKtVGIIG~GsIG~amA~nL~d~G~~ViV~~r~~~s~~~A~~~G~~v~sl~Eaak~ADVV~llLPd~~t~~V~~   89 (335)
T PRK13403         10 NVELLQGKTVAVIGYGSQGHAQAQNLRDSGVEVVVGVRPGKSFEVAKADGFEVMSVSEAVRTAQVVQMLLPDEQQAHVYK   89 (335)
T ss_pred             ChhhhCcCEEEEEeEcHHHHHHHHHHHHCcCEEEEEECcchhhHHHHHcCCEECCHHHHHhcCCEEEEeCCChHHHHHHH
Confidence            344566677776    88888899999999843   1343332 35568999999999999999999933   5689999


Q ss_pred             HhHHhcCCCCcEEEccCCCCcccc
Q psy4626         326 REHMDKMKNGCVVCNMGHSNTEID  349 (542)
Q Consensus       326 ~~~~~~mk~gail~n~gh~~~Ei~  349 (542)
                      .+.|..||+|++|+-+-.|++...
T Consensus        90 ~eil~~MK~GaiL~f~hgfni~~~  113 (335)
T PRK13403         90 AEVEENLREGQMLLFSHGFNIHFG  113 (335)
T ss_pred             HHHHhcCCCCCEEEECCCcceecC
Confidence            999999999999999999988655

>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed

Probab=96.59  E-value=0.009  Score=66.07  Aligned_cols=81  Identities=17%  Similarity=0.266  Sum_probs=57.8

Q ss_pred             HHHHHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhh-hcCCceeeCHHHH--hcCCcEEE
Q psy4626          61 ESIIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQA-CMDGFSVVKLNEV--IRTVDIVV  137 (542)
Q Consensus        61 ~s~~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A-~~~G~~v~~l~e~--l~~aDvVi  137 (542)
                      .+++.++.+. +..+.|++++|+|+|.+|+.++..+...|++|+++++++.+.... ...+....+.++.  +.++|+||
T Consensus       317 ~G~~~~l~~~-~~~~~~k~vlIiGaGgiG~aia~~L~~~G~~V~i~~R~~~~~~~la~~~~~~~~~~~~~~~l~~~DiVI  395 (477)
T PRK09310        317 EGLFSLLKQK-NIPLNNQHVAIVGAGGAAKAIATTLARAGAELLIFNRTKAHAEALASRCQGKAFPLESLPELHRIDIII  395 (477)
T ss_pred             HHHHHHHHhc-CCCcCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccceechhHhcccCCCCEEE
Confidence            3445555443 346789999999999999999999999999999999887665432 2222223333332  57899999


Q ss_pred             EcCCC
Q psy4626         138 TATGN  142 (542)
Q Consensus       138 ~atG~  142 (542)
                      .|+..
T Consensus       396 natP~  400 (477)
T PRK09310        396 NCLPP  400 (477)
T ss_pred             EcCCC
Confidence            99753

>PRK13771 putative alcohol dehydrogenase; Provisional

Probab=96.58  E-value=0.0096  Score=61.30  Aligned_cols=98  Identities=23%  Similarity=0.328  Sum_probs=71.1

Q ss_pred             HHHHHhhcCccccCcEEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce-eeC---HHHH---hcCCcE
Q psy4626          64 IDSLKRSTDVMFGGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVK---LNEV---IRTVDI  135 (542)
Q Consensus        64 ~~ai~r~~~~~l~GktVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~-v~~---l~e~---l~~aDv  135 (542)
                      ++++.+.  ....|.+|+|.|. |.+|..+++.++..|++|++++.++.+...+... +. +.+   ..+.   +...|+
T Consensus       152 ~~~~~~~--~~~~~~~vlI~g~~g~~g~~~~~la~~~g~~vi~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~d~  228 (334)
T PRK13771        152 YRGLRRA--GVKKGETVLVTGAGGGVGIHAIQVAKALGAKVIAVTSSESKAKIVSKY-ADYVIVGSKFSEEVKKIGGADI  228 (334)
T ss_pred             HHHHHhc--CCCCCCEEEEECCCccHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHH-HHHhcCchhHHHHHHhcCCCcE
Confidence            4444443  2457899999999 8999999999999999999998888765544322 11 111   1111   236899


Q ss_pred             EEEcCCCcccCCHHHHhccCCCeEEEeccCC
Q psy4626         136 VVTATGNKNVVTREHMDKMKNGCVVCNMGHS  166 (542)
Q Consensus       136 Vi~atG~~~lI~~e~l~~mk~GailvnvG~g  166 (542)
                      +++++|... + .+.++.+++++.++..|..
T Consensus       229 ~ld~~g~~~-~-~~~~~~l~~~G~~v~~g~~  257 (334)
T PRK13771        229 VIETVGTPT-L-EESLRSLNMGGKIIQIGNV  257 (334)
T ss_pred             EEEcCChHH-H-HHHHHHHhcCCEEEEEecc
Confidence            999998753 4 4789999999999998864

>cd08244 MDR_enoyl_red Possible enoyl reductase

Probab=96.57  E-value=0.012  Score=59.90  Aligned_cols=91  Identities=18%  Similarity=0.204  Sum_probs=70.5

Q ss_pred             cccCcEEEEEc-CChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce-eeC-----H-HH---Hh--cCCcEEEEcC
Q psy4626          74 MFGGKQVVLCG-YGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVK-----L-NE---VI--RTVDIVVTAT  140 (542)
Q Consensus        74 ~l~GktVvViG-~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~-v~~-----l-~e---~l--~~aDvVi~at  140 (542)
                      ...|.+|+|.| .|.+|..+++.++.+|++|++++.++.+...+...|.. +++     . +.   ..  ++.|++++++
T Consensus       140 ~~~~~~vlI~g~~~~~g~~~~~la~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~~~  219 (324)
T cd08244         140 LTPGDVVLVTAAAGGLGSLLVQLAKAAGATVVGAAGGPAKTALVRALGADVAVDYTRPDWPDQVREALGGGGVTVVLDGV  219 (324)
T ss_pred             CCCCCEEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCCEEEecCCccHHHHHHHHcCCCCceEEEECC
Confidence            35689999999 59999999999999999999999888776665555543 221     1 11   12  3699999999


Q ss_pred             CCcccCCHHHHhccCCCeEEEeccCC
Q psy4626         141 GNKNVVTREHMDKMKNGCVVCNMGHS  166 (542)
Q Consensus       141 G~~~lI~~e~l~~mk~GailvnvG~g  166 (542)
                      |....  .+.++.+++++.++.+|..
T Consensus       220 g~~~~--~~~~~~l~~~g~~v~~g~~  243 (324)
T cd08244         220 GGAIG--RAALALLAPGGRFLTYGWA  243 (324)
T ss_pred             ChHhH--HHHHHHhccCcEEEEEecC
Confidence            87643  5789999999999998864

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr

>cd08249 enoyl_reductase_like enoyl_reductase_like

Probab=96.56  E-value=0.011  Score=61.40  Aligned_cols=90  Identities=18%  Similarity=0.124  Sum_probs=68.6

Q ss_pred             ccCcEEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce-eeC-----HHHHh-----cCCcEEEEcCCC
Q psy4626          75 FGGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVK-----LNEVI-----RTVDIVVTATGN  142 (542)
Q Consensus        75 l~GktVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~-v~~-----l~e~l-----~~aDvVi~atG~  142 (542)
                      ..|++|+|.|. |.+|..+++.++.+|++|+++. ++.+...+...|.. +.+     ..+.+     .+.|++++++|.
T Consensus       153 ~~~~~vlI~ga~g~vg~~~~~~a~~~G~~v~~~~-~~~~~~~~~~~g~~~v~~~~~~~~~~~l~~~~~~~~d~vl~~~g~  231 (339)
T cd08249         153 SKGKPVLIWGGSSSVGTLAIQLAKLAGYKVITTA-SPKNFDLVKSLGADAVFDYHDPDVVEDIRAATGGKLRYALDCIST  231 (339)
T ss_pred             CCCCEEEEEcChhHHHHHHHHHHHHcCCeEEEEE-CcccHHHHHhcCCCEEEECCCchHHHHHHHhcCCCeeEEEEeecc
Confidence            47999999997 8999999999999999998876 66666666556653 221     11211     468999999887


Q ss_pred             cccCCHHHHhccCC--CeEEEeccCC
Q psy4626         143 KNVVTREHMDKMKN--GCVVCNMGHS  166 (542)
Q Consensus       143 ~~lI~~e~l~~mk~--GailvnvG~g  166 (542)
                      +..+ .+.++.+++  ++.++.+|..
T Consensus       232 ~~~~-~~~~~~l~~~~~g~~v~~g~~  256 (339)
T cd08249         232 PESA-QLCAEALGRSGGGKLVSLLPV  256 (339)
T ss_pred             chHH-HHHHHHHhccCCCEEEEecCC
Confidence            5555 378999999  9999988854

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol de

>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme

Probab=96.56  E-value=0.018  Score=58.57  Aligned_cols=108  Identities=12%  Similarity=0.115  Sum_probs=79.8

Q ss_pred             hhcCccccCcEEEEEcCChhHHHHHHHHHhCCC-----------EEEEEeCCc-----------hhhhh--hhcCCceee
Q psy4626          69 RSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGC-----------VIYITEIDP-----------ICALQ--ACMDGFSVV  124 (542)
Q Consensus        69 r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga-----------~Viv~d~dp-----------~r~~~--A~~~G~~v~  124 (542)
                      |.++..+...+++|+|.|.-|.++|+.+...++           +++.+|..-           .+...  .....-+..
T Consensus        17 k~~g~~l~d~riv~~GAGsAg~gia~ll~~~~~~~Gls~e~A~~~i~~vD~~Gll~~~r~~l~~~~~~~~~~~~~~~~~~   96 (254)
T cd00762          17 KVTKKKISEHKVLFNGAGAAALGIANLIVXLXVKEGISKEEACKRIWXVDRKGLLVKNRKETCPNEYHLARFANPERESG   96 (254)
T ss_pred             HHhCCChhhcEEEEECcCHHHHHHHHHHHHHHHhcCCCHHHHhccEEEECCCCeEeCCCCccCHHHHHHHHHcCcccccC
Confidence            445667889999999999999999999988776           578777542           12221  111222345


Q ss_pred             CHHHHhc--CCcEEEEcCCCcccCCHHHHhccC---CCeEEEeccCCCc--ccChHhhc
Q psy4626         125 KLNEVIR--TVDIVVTATGNKNVVTREHMDKMK---NGCVVCNMGHSNT--EIDVNSLR  176 (542)
Q Consensus       125 ~l~e~l~--~aDvVi~atG~~~lI~~e~l~~mk---~GailvnvG~g~~--eid~~aL~  176 (542)
                      ++.++++  ++|++|-+++.+++++++.++.|.   +.-+|.-.+....  |+..+...
T Consensus        97 ~L~eav~~~kptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLSNPt~~aE~tpe~a~  155 (254)
T cd00762          97 DLEDAVEAAKPDFLIGVSRVGGAFTPEVIRAXAEINERPVIFALSNPTSKAECTAEEAY  155 (254)
T ss_pred             CHHHHHHhhCCCEEEEeCCCCCCCCHHHHHHHhhcCCCCEEEECCCcCCccccCHHHHH
Confidence            7889988  999999999888999999999998   7777777676644  77666443

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut

>cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family

Probab=96.55  E-value=0.0092  Score=61.72  Aligned_cols=92  Identities=17%  Similarity=0.274  Sum_probs=69.3

Q ss_pred             cccCcEEEEEcCChhHHHHHHHHHhCCCE-EEEEeCCchhhhhhhcCCce-eeCHH------H------Hh--cCCcEEE
Q psy4626          74 MFGGKQVVLCGYGEVGKGCCQSLKGLGCV-IYITEIDPICALQACMDGFS-VVKLN------E------VI--RTVDIVV  137 (542)
Q Consensus        74 ~l~GktVvViG~G~IG~~vA~~l~~~Ga~-Viv~d~dp~r~~~A~~~G~~-v~~l~------e------~l--~~aDvVi  137 (542)
                      ...|.+|+|.|.|.+|..+++.++.+|++ |++++.++.+...+...|.. +++..      +      ..  ...|+++
T Consensus       159 ~~~g~~VlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~vi  238 (341)
T cd08262         159 LTPGEVALVIGCGPIGLAVIAALKARGVGPIVASDFSPERRALALAMGADIVVDPAADSPFAAWAAELARAGGPKPAVIF  238 (341)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcCCcEEEcCCCcCHHHHHHHHHHHhCCCCCCEEE
Confidence            45789999999999999999999999996 67777777776655556643 22210      1      12  3589999


Q ss_pred             EcCCCcccCCHHHHhccCCCeEEEeccCC
Q psy4626         138 TATGNKNVVTREHMDKMKNGCVVCNMGHS  166 (542)
Q Consensus       138 ~atG~~~lI~~e~l~~mk~GailvnvG~g  166 (542)
                      ++.|....+ .+.++.+++++.++++|..
T Consensus       239 d~~g~~~~~-~~~~~~l~~~g~~v~~g~~  266 (341)
T cd08262         239 ECVGAPGLI-QQIIEGAPPGGRIVVVGVC  266 (341)
T ss_pred             ECCCCHHHH-HHHHHHhccCCEEEEECCC
Confidence            998874444 3678999999999998864

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=96.53  E-value=0.015  Score=60.48  Aligned_cols=87  Identities=21%  Similarity=0.218  Sum_probs=59.0

Q ss_pred             cEEEEEcCChhHHHHHHHHHhCCC--EEEEEeCCchhhhhhhcC--------Cc--eee-CHHHHhcCCcEEEEcCCCcc
Q psy4626          78 KQVVLCGYGEVGKGCCQSLKGLGC--VIYITEIDPICALQACMD--------GF--SVV-KLNEVIRTVDIVVTATGNKN  144 (542)
Q Consensus        78 ktVvViG~G~IG~~vA~~l~~~Ga--~Viv~d~dp~r~~~A~~~--------G~--~v~-~l~e~l~~aDvVi~atG~~~  144 (542)
                      ++|+|+|.|.+|..+|..|...|.  +|+++|+++.++....++        +.  .+. ...+.+.++|+||.|+|.+.
T Consensus         1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~~~~l~~aDIVIitag~~~   80 (306)
T cd05291           1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAGDYSDCKDADIVVITAGAPQ   80 (306)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEcCCHHHhCCCCEEEEccCCCC
Confidence            479999999999999999999994  899999988764321111        11  111 12345789999999998532


Q ss_pred             cC--C---------------HHHHhccCCCeEEEecc
Q psy4626         145 VV--T---------------REHMDKMKNGCVVCNMG  164 (542)
Q Consensus       145 lI--~---------------~e~l~~mk~GailvnvG  164 (542)
                      --  +               .+.+....+.+++++++
T Consensus        81 ~~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivvs  117 (306)
T cd05291          81 KPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVAS  117 (306)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEec
Confidence            11  1               12344445777888877

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members

Probab=96.52  E-value=0.014  Score=59.82  Aligned_cols=102  Identities=22%  Similarity=0.216  Sum_probs=73.9

Q ss_pred             HHHHHHHhhcCccccCcEEEEEc-CChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce-eeC-----HHHHh----
Q psy4626          62 SIIDSLKRSTDVMFGGKQVVLCG-YGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVK-----LNEVI----  130 (542)
Q Consensus        62 s~~~ai~r~~~~~l~GktVvViG-~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~-v~~-----l~e~l----  130 (542)
                      ..|+++.+.. ....|++++|.| .|.+|..+++.++.+|++|+++..++.+...+...|.. +.+     ..+.+    
T Consensus       126 ta~~~l~~~~-~~~~~~~vlI~ga~g~ig~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~  204 (329)
T cd08250         126 TASIALEEVG-EMKSGETVLVTAAAGGTGQFAVQLAKLAGCHVIGTCSSDEKAEFLKSLGCDRPINYKTEDLGEVLKKEY  204 (329)
T ss_pred             HHHHHHHHhc-CCCCCCEEEEEeCccHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHcCCceEEeCCCccHHHHHHHhc
Confidence            3455554432 345799999999 59999999999999999999998877766655555642 221     11211    


Q ss_pred             -cCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCC
Q psy4626         131 -RTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHS  166 (542)
Q Consensus       131 -~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g  166 (542)
                       ++.|+++++.|.. .+ .+.++.+++++.++++|..
T Consensus       205 ~~~vd~v~~~~g~~-~~-~~~~~~l~~~g~~v~~g~~  239 (329)
T cd08250         205 PKGVDVVYESVGGE-MF-DTCVDNLALKGRLIVIGFI  239 (329)
T ss_pred             CCCCeEEEECCcHH-HH-HHHHHHhccCCeEEEEecc
Confidence             4689999998863 34 4689999999999998854

Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.

>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]

Probab=96.51  E-value=0.013  Score=60.58  Aligned_cols=105  Identities=16%  Similarity=0.103  Sum_probs=82.3

Q ss_pred             HHHHHHHHHHhhcCccccCcEEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhc-CCcee-e-----CHHHH-
Q psy4626          59 CRESIIDSLKRSTDVMFGGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACM-DGFSV-V-----KLNEV-  129 (542)
Q Consensus        59 ~~~s~~~ai~r~~~~~l~GktVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~-~G~~v-~-----~l~e~-  129 (542)
                      ++.+.+.++.+- +..-.|+||+|-|+ |.+|.-+.|.+|-.|++|+.+--.+.+...... .||+. +     ++.+. 
T Consensus       134 pG~TAY~gLl~i-gqpk~GetvvVSaAaGaVGsvvgQiAKlkG~rVVGiaGg~eK~~~l~~~lGfD~~idyk~~d~~~~L  212 (340)
T COG2130         134 PGLTAYFGLLDI-GQPKAGETVVVSAAAGAVGSVVGQIAKLKGCRVVGIAGGAEKCDFLTEELGFDAGIDYKAEDFAQAL  212 (340)
T ss_pred             chHHHHHHHHHh-cCCCCCCEEEEEecccccchHHHHHHHhhCCeEEEecCCHHHHHHHHHhcCCceeeecCcccHHHHH
Confidence            356677777655 34678999999997 999999999999999999999777777665555 67763 2     33333 


Q ss_pred             ---h-cCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCC
Q psy4626         130 ---I-RTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHS  166 (542)
Q Consensus       130 ---l-~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g  166 (542)
                         + ++.|+.|++.|.. +++ ..|.+|+..++++.+|.-
T Consensus       213 ~~a~P~GIDvyfeNVGg~-v~D-Av~~~ln~~aRi~~CG~I  251 (340)
T COG2130         213 KEACPKGIDVYFENVGGE-VLD-AVLPLLNLFARIPVCGAI  251 (340)
T ss_pred             HHHCCCCeEEEEEcCCch-HHH-HHHHhhccccceeeeeeh
Confidence               3 6899999999864 444 689999999999999963

>PTZ00354 alcohol dehydrogenase; Provisional

Probab=96.51  E-value=0.023  Score=58.08  Aligned_cols=90  Identities=14%  Similarity=0.159  Sum_probs=68.3

Q ss_pred             cccCcEEEEEc-CChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce-eeC------HHH----Hh--cCCcEEEEc
Q psy4626          74 MFGGKQVVLCG-YGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVK------LNE----VI--RTVDIVVTA  139 (542)
Q Consensus        74 ~l~GktVvViG-~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~-v~~------l~e----~l--~~aDvVi~a  139 (542)
                      ...|.+|+|.| .|.+|+.+++.++..|++|+++..++.+...+...|.. +++      ..+    ..  ++.|+++++
T Consensus       138 ~~~~~~vlI~ga~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~  217 (334)
T PTZ00354        138 VKKGQSVLIHAGASGVGTAAAQLAEKYGAATIITTSSEEKVDFCKKLAAIILIRYPDEEGFAPKVKKLTGEKGVNLVLDC  217 (334)
T ss_pred             CCCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCcEEEecCChhHHHHHHHHHhCCCCceEEEEC
Confidence            35789999999 59999999999999999988888888777666555653 221      111    12  468999999


Q ss_pred             CCCcccCCHHHHhccCCCeEEEeccC
Q psy4626         140 TGNKNVVTREHMDKMKNGCVVCNMGH  165 (542)
Q Consensus       140 tG~~~lI~~e~l~~mk~GailvnvG~  165 (542)
                      .|.. .+ ...++.+++++.+++.|.
T Consensus       218 ~~~~-~~-~~~~~~l~~~g~~i~~~~  241 (334)
T PTZ00354        218 VGGS-YL-SETAEVLAVDGKWIVYGF  241 (334)
T ss_pred             CchH-HH-HHHHHHhccCCeEEEEec
Confidence            8753 34 367889999999998874

>PRK06199 ornithine cyclodeaminase; Validated

Probab=96.51  E-value=0.013  Score=63.02  Aligned_cols=94  Identities=26%  Similarity=0.220  Sum_probs=67.4

Q ss_pred             CcEEEEEcCChhHHHHHHHHHh-C-CC-EEEEEeCCchhhhh-h----hcC-C---ce-eeCHHHHhcCCcEEEEcCCC-
Q psy4626          77 GKQVVLCGYGEVGKGCCQSLKG-L-GC-VIYITEIDPICALQ-A----CMD-G---FS-VVKLNEVIRTVDIVVTATGN-  142 (542)
Q Consensus        77 GktVvViG~G~IG~~vA~~l~~-~-Ga-~Viv~d~dp~r~~~-A----~~~-G---~~-v~~l~e~l~~aDvVi~atG~-  142 (542)
                      -++++|+|+|..++..++.+.. + .. +|.+|++++.++.. +    ... |   +. +.+.++++.+||||++||.+ 
T Consensus       155 a~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~~~~~~~~~~~v~~~~s~~eav~~ADIVvtaT~s~  234 (379)
T PRK06199        155 SKVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATWVAETYPQITNVEVVDSIEEVVRGSDIVTYCNSGE  234 (379)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCCceEEEeCCHHHHHcCCCEEEEccCCC
Confidence            5799999999999988888765 4 34 99999999987542 1    111 2   22 24678899999999998742 


Q ss_pred             c------ccCCHHHHhccCCCeEEEeccCCCcccChHhh
Q psy4626         143 K------NVVTREHMDKMKNGCVVCNMGHSNTEIDVNSL  175 (542)
Q Consensus       143 ~------~lI~~e~l~~mk~GailvnvG~g~~eid~~aL  175 (542)
                      .      +++..   +.+|+|..++.+|.  .|+|-.-+
T Consensus       235 ~~~~s~~Pv~~~---~~lkpG~hv~~ig~--~eld~~~l  268 (379)
T PRK06199        235 TGDPSTYPYVKR---EWVKPGAFLLMPAA--CRIDEGME  268 (379)
T ss_pred             CCCCCcCcEecH---HHcCCCcEEecCCc--ccCCHHHH
Confidence            2      66754   45789998887775  45664433

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=96.49  E-value=0.011  Score=60.45  Aligned_cols=85  Identities=13%  Similarity=0.144  Sum_probs=58.0

Q ss_pred             EEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCcee------------eCHHHHhcCCcEEEEcCCCcccC
Q psy4626          79 QVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV------------VKLNEVIRTVDIVVTATGNKNVV  146 (542)
Q Consensus        79 tVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v------------~~l~e~l~~aDvVi~atG~~~lI  146 (542)
                      +++|+|+|.+|..+|..|...|.+|+++++++.+.......|...            .+..++ +.+|+||.|+.+..+ 
T Consensus         2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~d~vila~k~~~~-   79 (304)
T PRK06522          2 KIAILGAGAIGGLFGAALAQAGHDVTLVARRGAHLDALNENGLRLEDGEITVPVLAADDPAEL-GPQDLVILAVKAYQL-   79 (304)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEECChHHHHHHHHcCCcccCCceeecccCCCChhHc-CCCCEEEEecccccH-
Confidence            699999999999999999999999999998776554333344421            123333 789999999865433 


Q ss_pred             CHHHHhc----cCCCeEEEeccCC
Q psy4626         147 TREHMDK----MKNGCVVCNMGHS  166 (542)
Q Consensus       147 ~~e~l~~----mk~GailvnvG~g  166 (542)
                       .+.++.    +.++..++...-|
T Consensus        80 -~~~~~~l~~~l~~~~~iv~~~nG  102 (304)
T PRK06522         80 -PAALPSLAPLLGPDTPVLFLQNG  102 (304)
T ss_pred             -HHHHHHHhhhcCCCCEEEEecCC
Confidence             233433    4456666654433

>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins

Probab=96.48  E-value=0.0061  Score=55.66  Aligned_cols=87  Identities=21%  Similarity=0.361  Sum_probs=52.4

Q ss_pred             CcEEEEEcCChhHHHHHHHHHhCCCEEEEE-eCCchhhhhhhc--CCceeeCHHHHhcCCcEEEEcCCCcccCC--HHHH
Q psy4626          77 GKQVVLCGYGEVGKGCCQSLKGLGCVIYIT-EIDPICALQACM--DGFSVVKLNEVIRTVDIVVTATGNKNVVT--REHM  151 (542)
Q Consensus        77 GktVvViG~G~IG~~vA~~l~~~Ga~Viv~-d~dp~r~~~A~~--~G~~v~~l~e~l~~aDvVi~atG~~~lI~--~e~l  151 (542)
                      --+|+|||+|++|..+++.|+..|..|..+ .+++.....+..  .+..+.++++.+..+|+++.++... .|.  .+.+
T Consensus        10 ~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~~~~~~~~~~~~~~~~aDlv~iavpDd-aI~~va~~L   88 (127)
T PF10727_consen   10 RLKIGIIGAGRVGTALARALARAGHEVVGVYSRSPASAERAAAFIGAGAILDLEEILRDADLVFIAVPDD-AIAEVAEQL   88 (127)
T ss_dssp             --EEEEECTSCCCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC--TT-----TTGGGCC-SEEEE-S-CC-HHHHHHHHH
T ss_pred             ccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCcccccccccccccccccccccccccCCEEEEEechH-HHHHHHHHH
Confidence            458999999999999999999999988776 444433333322  2334567788899999999988643 332  1233


Q ss_pred             hc---cCCCeEEEecc
Q psy4626         152 DK---MKNGCVVCNMG  164 (542)
Q Consensus       152 ~~---mk~GailvnvG  164 (542)
                      ..   .++|.+++-++
T Consensus        89 a~~~~~~~g~iVvHtS  104 (127)
T PF10727_consen   89 AQYGAWRPGQIVVHTS  104 (127)
T ss_dssp             HCC--S-TT-EEEES-
T ss_pred             HHhccCCCCcEEEECC
Confidence            33   46888877554

This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.

>cd08290 ETR 2-enoyl thioester reductase (ETR)

Probab=96.48  E-value=0.026  Score=58.32  Aligned_cols=101  Identities=19%  Similarity=0.153  Sum_probs=69.4

Q ss_pred             HHHHHHhhcCccccCcEEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCc----hhhhhhhcCCce-ee--------CHHH
Q psy4626          63 IIDSLKRSTDVMFGGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDP----ICALQACMDGFS-VV--------KLNE  128 (542)
Q Consensus        63 ~~~ai~r~~~~~l~GktVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp----~r~~~A~~~G~~-v~--------~l~e  128 (542)
                      .++++.+.. ...+|++|+|.|. |.+|..+++.++..|++|+++..++    .+...+...|+. ++        +..+
T Consensus       134 a~~~l~~~~-~~~~g~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  212 (341)
T cd08290         134 AYRLLEDFV-KLQPGDWVIQNGANSAVGQAVIQLAKLLGIKTINVVRDRPDLEELKERLKALGADHVLTEEELRSLLATE  212 (341)
T ss_pred             HHHHHHhhc-ccCCCCEEEEccchhHHHHHHHHHHHHcCCeEEEEEcCCCcchhHHHHHHhcCCCEEEeCcccccccHHH
Confidence            344443322 2357999999987 9999999999999999988875443    334444455653 22        1212


Q ss_pred             Hh----c-CCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCC
Q psy4626         129 VI----R-TVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHS  166 (542)
Q Consensus       129 ~l----~-~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g  166 (542)
                      .+    . +.|++++++|....  .+.++.+++++.++.+|..
T Consensus       213 ~i~~~~~~~~d~vld~~g~~~~--~~~~~~l~~~G~~v~~g~~  253 (341)
T cd08290         213 LLKSAPGGRPKLALNCVGGKSA--TELARLLSPGGTMVTYGGM  253 (341)
T ss_pred             HHHHHcCCCceEEEECcCcHhH--HHHHHHhCCCCEEEEEecc
Confidence            11    1 58999999997543  3578889999999998843

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f

>cd05278 FDH_like Formaldehyde dehydrogenases

Probab=96.45  E-value=0.011  Score=61.21  Aligned_cols=92  Identities=24%  Similarity=0.347  Sum_probs=69.3

Q ss_pred             cccCcEEEEEcCChhHHHHHHHHHhCCC-EEEEEeCCchhhhhhhcCCce-eeC-----HHH----Hh--cCCcEEEEcC
Q psy4626          74 MFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMDGFS-VVK-----LNE----VI--RTVDIVVTAT  140 (542)
Q Consensus        74 ~l~GktVvViG~G~IG~~vA~~l~~~Ga-~Viv~d~dp~r~~~A~~~G~~-v~~-----l~e----~l--~~aDvVi~at  140 (542)
                      ...|++|+|.|.|.+|..+++.++.+|. +|++++.++.+...+...|+. +++     ..+    ..  .+.|+++++.
T Consensus       165 ~~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~i~~~~~~~~~d~vld~~  244 (347)
T cd05278         165 IKPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEAGATDIINPKNGDIVEQILELTGGRGVDCVIEAV  244 (347)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHhCCcEEEcCCcchHHHHHHHHcCCCCCcEEEEcc
Confidence            4478999999999999999999999997 898888777666555555543 222     112    11  3689999998


Q ss_pred             CCcccCCHHHHhccCCCeEEEeccCC
Q psy4626         141 GNKNVVTREHMDKMKNGCVVCNMGHS  166 (542)
Q Consensus       141 G~~~lI~~e~l~~mk~GailvnvG~g  166 (542)
                      |....+ .+.++.|++++.++..|..
T Consensus       245 g~~~~~-~~~~~~l~~~G~~v~~g~~  269 (347)
T cd05278         245 GFEETF-EQAVKVVRPGGTIANVGVY  269 (347)
T ss_pred             CCHHHH-HHHHHHhhcCCEEEEEcCC
Confidence            764445 4678999999999998854

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=96.45  E-value=0.0093  Score=62.39  Aligned_cols=87  Identities=15%  Similarity=0.211  Sum_probs=58.8

Q ss_pred             cEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCcee-----------------eCHHHHhcCCcEEEEcC
Q psy4626          78 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV-----------------VKLNEVIRTVDIVVTAT  140 (542)
Q Consensus        78 ktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v-----------------~~l~e~l~~aDvVi~at  140 (542)
                      .+|+|+|.|.+|..+|..|...|.+|+++++++.. ......|..+                 .+..+.+..+|+||.|+
T Consensus         3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vil~v   81 (341)
T PRK08229          3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGRARIG-DELRAHGLTLTDYRGRDVRVPPSAIAFSTDPAALATADLVLVTV   81 (341)
T ss_pred             ceEEEECCCHHHHHHHHHHHhcCCcEEEEecHHHH-HHHHhcCceeecCCCcceecccceeEeccChhhccCCCEEEEEe
Confidence            37999999999999999999999999999986642 2222334321                 11124567899999987


Q ss_pred             CCcccCC--HHHHhccCCCeEEEeccC
Q psy4626         141 GNKNVVT--REHMDKMKNGCVVCNMGH  165 (542)
Q Consensus       141 G~~~lI~--~e~l~~mk~GailvnvG~  165 (542)
                      .+.....  .+....++++.+++.+.-
T Consensus        82 k~~~~~~~~~~l~~~~~~~~iii~~~n  108 (341)
T PRK08229         82 KSAATADAAAALAGHARPGAVVVSFQN  108 (341)
T ss_pred             cCcchHHHHHHHHhhCCCCCEEEEeCC
Confidence            6543321  223344577888776643

>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein

Probab=96.45  E-value=0.027  Score=57.99  Aligned_cols=87  Identities=18%  Similarity=0.198  Sum_probs=66.0

Q ss_pred             CcEEEEEcC-ChhHHHHHHHHHhC-CCEEEEEeCCchhhhhhhcCCce-eeC----HHHH---h--cCCcEEEEcCCCcc
Q psy4626          77 GKQVVLCGY-GEVGKGCCQSLKGL-GCVIYITEIDPICALQACMDGFS-VVK----LNEV---I--RTVDIVVTATGNKN  144 (542)
Q Consensus        77 GktVvViG~-G~IG~~vA~~l~~~-Ga~Viv~d~dp~r~~~A~~~G~~-v~~----l~e~---l--~~aDvVi~atG~~~  144 (542)
                      |.+|+|.|. |.+|..+++.++.+ |++|+++..++.+...+...|.+ +.+    ..+.   +  .+.|++++++|...
T Consensus       149 g~~vlV~ga~g~vg~~~~~~ak~~~G~~vi~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~i~~~~~~~vd~vl~~~~~~~  228 (336)
T TIGR02817       149 KRALLIIGGAGGVGSILIQLARQLTGLTVIATASRPESQEWVLELGAHHVIDHSKPLKAQLEKLGLEAVSYVFSLTHTDQ  228 (336)
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHHHHcCCCEEEECCCCHHHHHHHhcCCCCCEEEEcCCcHH
Confidence            899999995 99999999999998 99999998777766655556653 222    2221   1  36899999876544


Q ss_pred             cCCHHHHhccCCCeEEEecc
Q psy4626         145 VVTREHMDKMKNGCVVCNMG  164 (542)
Q Consensus       145 lI~~e~l~~mk~GailvnvG  164 (542)
                      .+ .+.++.+++++.+++.+
T Consensus       229 ~~-~~~~~~l~~~G~~v~~~  247 (336)
T TIGR02817       229 HF-KEIVELLAPQGRFALID  247 (336)
T ss_pred             HH-HHHHHHhccCCEEEEEc
Confidence            55 37899999999999875

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=96.43  E-value=0.0072  Score=59.26  Aligned_cols=36  Identities=22%  Similarity=0.515  Sum_probs=33.5

Q ss_pred             cccCcEEEEEcCChhHHHHHHHHHhCCC-EEEEEeCC
Q psy4626          74 MFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEID  109 (542)
Q Consensus        74 ~l~GktVvViG~G~IG~~vA~~l~~~Ga-~Viv~d~d  109 (542)
                      .+..++|+|+|+|.+|..+|..|...|. +++++|.|
T Consensus        18 ~L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D   54 (200)
T TIGR02354        18 KLEQATVAICGLGGLGSNVAINLARAGIGKLILVDFD   54 (200)
T ss_pred             HHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence            4678899999999999999999999999 79999988

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>cd08248 RTN4I1 Human Reticulon 4 Interacting Protein 1

Probab=96.43  E-value=0.029  Score=58.07  Aligned_cols=88  Identities=22%  Similarity=0.265  Sum_probs=65.0

Q ss_pred             cCcEEEEEc-CChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce-eeC-----HHHH---hcCCcEEEEcCCCccc
Q psy4626          76 GGKQVVLCG-YGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVK-----LNEV---IRTVDIVVTATGNKNV  145 (542)
Q Consensus        76 ~GktVvViG-~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~-v~~-----l~e~---l~~aDvVi~atG~~~l  145 (542)
                      .|.+|+|.| .|.+|..+++.++.+|++|++...+ .+...+...|.. +++     ..+.   ..+.|+++++.|.. .
T Consensus       162 ~g~~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~vd~vi~~~g~~-~  239 (350)
T cd08248         162 AGKRVLILGGSGGVGTFAIQLLKAWGAHVTTTCST-DAIPLVKSLGADDVIDYNNEDFEEELTERGKFDVILDTVGGD-T  239 (350)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCc-chHHHHHHhCCceEEECCChhHHHHHHhcCCCCEEEECCChH-H
Confidence            499999999 5999999999999999998887643 344444445542 221     1111   25699999999875 4


Q ss_pred             CCHHHHhccCCCeEEEeccCC
Q psy4626         146 VTREHMDKMKNGCVVCNMGHS  166 (542)
Q Consensus       146 I~~e~l~~mk~GailvnvG~g  166 (542)
                      + ...++.+++++.++++|..
T Consensus       240 ~-~~~~~~l~~~G~~v~~g~~  259 (350)
T cd08248         240 E-KWALKLLKKGGTYVTLVSP  259 (350)
T ss_pred             H-HHHHHHhccCCEEEEecCC
Confidence            4 4689999999999998854

Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.

>PRK13301 putative L-aspartate dehydrogenase; Provisional

Probab=96.41  E-value=0.0071  Score=61.74  Aligned_cols=87  Identities=14%  Similarity=0.176  Sum_probs=57.6

Q ss_pred             cEEEEEcCChhHHHHHHHHHhCC---CE-EEEEeCCchhhhhhhcCCcee-eCHHHH-hcCCcEEEEcCCCcccCCHHHH
Q psy4626          78 KQVVLCGYGEVGKGCCQSLKGLG---CV-IYITEIDPICALQACMDGFSV-VKLNEV-IRTVDIVVTATGNKNVVTREHM  151 (542)
Q Consensus        78 ktVvViG~G~IG~~vA~~l~~~G---a~-Viv~d~dp~r~~~A~~~G~~v-~~l~e~-l~~aDvVi~atG~~~lI~~e~l  151 (542)
                      .+|+|+|||.||+.+++.+..-+   .+ +.++++++.+...... ...+ .+++++ ...+|+|++|.+.. .+..-..
T Consensus         3 ~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~~~-~~~~~~~l~~ll~~~~DlVVE~A~~~-av~e~~~   80 (267)
T PRK13301          3 HRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLPPALAG-RVALLDGLPGLLAWRPDLVVEAAGQQ-AIAEHAE   80 (267)
T ss_pred             eEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHhhc-cCcccCCHHHHhhcCCCEEEECCCHH-HHHHHHH
Confidence            58999999999999999987543   43 4557777655433222 2333 458886 47899999998754 3433445


Q ss_pred             hccCCCeEEEeccCC
Q psy4626         152 DKMKNGCVVCNMGHS  166 (542)
Q Consensus       152 ~~mk~GailvnvG~g  166 (542)
                      ..|+.|.-++-.+.|
T Consensus        81 ~iL~~g~dlvv~SvG   95 (267)
T PRK13301         81 GCLTAGLDMIICSAG   95 (267)
T ss_pred             HHHhcCCCEEEEChh
Confidence            567767665554433

>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases

Probab=96.39  E-value=0.017  Score=59.82  Aligned_cols=102  Identities=24%  Similarity=0.309  Sum_probs=72.4

Q ss_pred             HHHHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCCCE-EEEEeCCchhhhhhhcCCce-eeC-----HH---HHh-
Q psy4626          62 SIIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCV-IYITEIDPICALQACMDGFS-VVK-----LN---EVI-  130 (542)
Q Consensus        62 s~~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga~-Viv~d~dp~r~~~A~~~G~~-v~~-----l~---e~l-  130 (542)
                      ..|+++.+.  ....|.+|+|.|.|.+|..+++.++.+|++ |++++.++.+.......|.. +++     .+   ... 
T Consensus       147 ta~~~l~~~--~~~~~~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~  224 (343)
T cd08236         147 VALHAVRLA--GITLGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVARELGADDTINPKEEDVEKVRELTE  224 (343)
T ss_pred             HHHHHHHhc--CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCCEEecCccccHHHHHHHhC
Confidence            334554432  245789999999999999999999999997 99998777655444444432 221     11   222 


Q ss_pred             -cCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCC
Q psy4626         131 -RTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHS  166 (542)
Q Consensus       131 -~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g  166 (542)
                       ++.|++++++|....+ ...++.|++++.++.+|..
T Consensus       225 ~~~~d~vld~~g~~~~~-~~~~~~l~~~G~~v~~g~~  260 (343)
T cd08236         225 GRGADLVIEAAGSPATI-EQALALARPGGKVVLVGIP  260 (343)
T ss_pred             CCCCCEEEECCCCHHHH-HHHHHHhhcCCEEEEEccc
Confidence             3489999998765555 3678999999999998854

This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast

>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase

Probab=96.37  E-value=0.017  Score=59.75  Aligned_cols=101  Identities=20%  Similarity=0.317  Sum_probs=72.6

Q ss_pred             HHHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCCCE-EEEEeCCchhhhhhhcCCce-eeC-----H----HHHh-
Q psy4626          63 IIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCV-IYITEIDPICALQACMDGFS-VVK-----L----NEVI-  130 (542)
Q Consensus        63 ~~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga~-Viv~d~dp~r~~~A~~~G~~-v~~-----l----~e~l-  130 (542)
                      .++++...  ....|++|+|.|.|.+|..+++.++..|++ |+++..++.+.......|.. +++     .    .+.. 
T Consensus       154 a~~~l~~~--~~~~g~~VlV~g~g~vg~~~~~la~~~g~~~v~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~i~~~~~  231 (343)
T cd08235         154 CINAQRKA--GIKPGDTVLVIGAGPIGLLHAMLAKASGARKVIVSDLNEFRLEFAKKLGADYTIDAAEEDLVEKVRELTD  231 (343)
T ss_pred             HHHHHHhc--CCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCcEEecCCccCHHHHHHHHhC
Confidence            44555333  245799999999999999999999999998 88888777766554444542 221     1    1222 


Q ss_pred             -cCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCC
Q psy4626         131 -RTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHS  166 (542)
Q Consensus       131 -~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g  166 (542)
                       ++.|+++++.|....+ .+.++.+++++.++..|..
T Consensus       232 ~~~vd~vld~~~~~~~~-~~~~~~l~~~g~~v~~~~~  267 (343)
T cd08235         232 GRGADVVIVATGSPEAQ-AQALELVRKGGRILFFGGL  267 (343)
T ss_pred             CcCCCEEEECCCChHHH-HHHHHHhhcCCEEEEEecc
Confidence             3589999998865445 3678899999999988753

Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i

>smart00829 PKS_ER Enoylreductase

Probab=96.36  E-value=0.036  Score=54.60  Aligned_cols=91  Identities=19%  Similarity=0.300  Sum_probs=69.6

Q ss_pred             cccCcEEEEEc-CChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCc--e-eeC-----HHH----Hh--cCCcEEEE
Q psy4626          74 MFGGKQVVLCG-YGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGF--S-VVK-----LNE----VI--RTVDIVVT  138 (542)
Q Consensus        74 ~l~GktVvViG-~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~--~-v~~-----l~e----~l--~~aDvVi~  138 (542)
                      ...|++|+|.| .|.+|..+++.++.+|++|++++.++.+...+...|.  . +++     ..+    ..  +..|++++
T Consensus       102 ~~~g~~vlv~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~  181 (288)
T smart00829      102 LRPGESVLIHAAAGGVGQAAIQLAQHLGAEVFATAGSPEKRDFLRELGIPDDHIFSSRDLSFADEILRATGGRGVDVVLN  181 (288)
T ss_pred             CCCCCEEEEecCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCChhheeeCCCccHHHHHHHHhCCCCcEEEEe
Confidence            45799999999 6999999999999999999999988887766655564  1 221     111    12  36899999


Q ss_pred             cCCCcccCCHHHHhccCCCeEEEeccCC
Q psy4626         139 ATGNKNVVTREHMDKMKNGCVVCNMGHS  166 (542)
Q Consensus       139 atG~~~lI~~e~l~~mk~GailvnvG~g  166 (542)
                      +.|. ..+ ...++.+++++.++..|..
T Consensus       182 ~~~~-~~~-~~~~~~l~~~g~~v~~g~~  207 (288)
T smart00829      182 SLAG-EFL-DASLRCLAPGGRFVEIGKR  207 (288)
T ss_pred             CCCH-HHH-HHHHHhccCCcEEEEEcCc
Confidence            9874 344 3678999999999998864

Enoylreductase in Polyketide synthases.

>PRK00676 hemA glutamyl-tRNA reductase; Validated

Probab=96.36  E-value=0.012  Score=62.32  Aligned_cols=88  Identities=11%  Similarity=0.142  Sum_probs=59.1

Q ss_pred             cccCcEEEEEcCChhHHHHHHHHHhCCC-EEEEEeCCchhhhhhhcCCceeeCHHHHhcCCcEEEEc---CCCc-ccCCH
Q psy4626          74 MFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTA---TGNK-NVVTR  148 (542)
Q Consensus        74 ~l~GktVvViG~G~IG~~vA~~l~~~Ga-~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~aDvVi~a---tG~~-~lI~~  148 (542)
                      .+.|++|+|+|+|.+|..+++.|+..|+ +|+++.++..+..    .+-......+....+||||.|   |+++ +.++.
T Consensus       171 ~l~~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt~~~~~----~~~~~~~~~~~~~~~DvVIs~t~~Tas~~p~i~~  246 (338)
T PRK00676        171 KSKKASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQQLTLP----YRTVVREELSFQDPYDVIFFGSSESAYAFPHLSW  246 (338)
T ss_pred             CccCCEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCCccccc----hhhhhhhhhhcccCCCEEEEcCCcCCCCCceeeH
Confidence            4789999999999999999999999996 7999987763211    100000111234689999986   4443 45666


Q ss_pred             HHHhccCCCeEEEeccCC
Q psy4626         149 EHMDKMKNGCVVCNMGHS  166 (542)
Q Consensus       149 e~l~~mk~GailvnvG~g  166 (542)
                      +.++..++ -.++..+..
T Consensus       247 ~~~~~~~~-r~~iDLAvP  263 (338)
T PRK00676        247 ESLADIPD-RIVFDFNVP  263 (338)
T ss_pred             HHHhhccC-cEEEEecCC
Confidence            66655433 367777743

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=96.35  E-value=0.011  Score=58.31  Aligned_cols=88  Identities=24%  Similarity=0.246  Sum_probs=58.8

Q ss_pred             EEEEEc-CChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhc--------CCc----eeeCHHHHhcCCcEEEEcCCCccc
Q psy4626          79 QVVLCG-YGEVGKGCCQSLKGLGCVIYITEIDPICALQACM--------DGF----SVVKLNEVIRTVDIVVTATGNKNV  145 (542)
Q Consensus        79 tVvViG-~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~--------~G~----~v~~l~e~l~~aDvVi~atG~~~l  145 (542)
                      +++|+| .|.+|..++..+...|.+|+++++++.+......        .|+    ...+..++++.+|+||.|+....+
T Consensus         2 kI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~ea~~~aDvVilavp~~~~   81 (219)
T TIGR01915         2 KIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDLEKAEEAAAKALEELGHGGSDIKVTGADNAEAAKRADVVILAVPWDHV   81 (219)
T ss_pred             EEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCHHHHHHHHHHHHhhccccCCCceEEEeChHHHHhcCCEEEEECCHHHH
Confidence            699997 8999999999999999999999998876532211        122    123556778899999998754332


Q ss_pred             CC-HHHHhccCCCeEEEeccCC
Q psy4626         146 VT-REHMDKMKNGCVVCNMGHS  166 (542)
Q Consensus       146 I~-~e~l~~mk~GailvnvG~g  166 (542)
                      -. .+.+....++.+++++.-+
T Consensus        82 ~~~l~~l~~~l~~~vvI~~~ng  103 (219)
T TIGR01915        82 LKTLESLRDELSGKLVISPVVP  103 (219)
T ss_pred             HHHHHHHHHhccCCEEEEeccC
Confidence            11 0122211234677776544

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=96.33  E-value=0.011  Score=63.63  Aligned_cols=88  Identities=18%  Similarity=0.204  Sum_probs=65.3

Q ss_pred             cEEEEEcCChhHHHHHHHHHhCC-CEEEEEeCCchhhhhhhcCC---cee--eC------HHHHhcCCcEEEEcCCCccc
Q psy4626          78 KQVVLCGYGEVGKGCCQSLKGLG-CVIYITEIDPICALQACMDG---FSV--VK------LNEVIRTVDIVVTATGNKNV  145 (542)
Q Consensus        78 ktVvViG~G~IG~~vA~~l~~~G-a~Viv~d~dp~r~~~A~~~G---~~v--~~------l~e~l~~aDvVi~atG~~~l  145 (542)
                      ++++|+|+|.||+.+|..|...| .+|++.|+++.++.++....   .++  ++      +.+++++.|+||.|..-  -
T Consensus         2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~VIn~~p~--~   79 (389)
T COG1748           2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVALIKDFDLVINAAPP--F   79 (389)
T ss_pred             CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEecccChHHHHHHHhcCCEEEEeCCc--h
Confidence            57999999999999999999999 79999999988776654442   222  22      34567888999998643  3


Q ss_pred             CCHHHH-hccCCCeEEEeccCCC
Q psy4626         146 VTREHM-DKMKNGCVVCNMGHSN  167 (542)
Q Consensus       146 I~~e~l-~~mk~GailvnvG~g~  167 (542)
                      ++...+ ..++.|.-.+.++-..
T Consensus        80 ~~~~i~ka~i~~gv~yvDts~~~  102 (389)
T COG1748          80 VDLTILKACIKTGVDYVDTSYYE  102 (389)
T ss_pred             hhHHHHHHHHHhCCCEEEcccCC
Confidence            444555 3457888888877543

>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family

Probab=96.33  E-value=0.014  Score=60.43  Aligned_cols=93  Identities=26%  Similarity=0.373  Sum_probs=69.3

Q ss_pred             cccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce-eeC-----HHH----Hh--cCCcEEEEcCC
Q psy4626          74 MFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVK-----LNE----VI--RTVDIVVTATG  141 (542)
Q Consensus        74 ~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~-v~~-----l~e----~l--~~aDvVi~atG  141 (542)
                      ...|++|+|.|.|.+|..+++.++.+|++|+++..++.+.......|.. +++     ..+    ..  +..|+++++.|
T Consensus       157 l~~g~~vLI~g~g~vG~~a~~lA~~~g~~v~~~~~s~~~~~~~~~~g~~~v~~~~~~~~~~~l~~~~~~~~vd~vld~~g  236 (337)
T cd08261         157 VTAGDTVLVVGAGPIGLGVIQVAKARGARVIVVDIDDERLEFARELGADDTINVGDEDVAARLRELTDGEGADVVIDATG  236 (337)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHhCCCEEecCcccCHHHHHHHHhCCCCCCEEEECCC
Confidence            4578999999999999999999999999999997777666544444442 221     212    22  35899999987


Q ss_pred             CcccCCHHHHhccCCCeEEEeccCCC
Q psy4626         142 NKNVVTREHMDKMKNGCVVCNMGHSN  167 (542)
Q Consensus       142 ~~~lI~~e~l~~mk~GailvnvG~g~  167 (542)
                      ....+ .+.++.|++++.++..|..+
T Consensus       237 ~~~~~-~~~~~~l~~~G~~i~~g~~~  261 (337)
T cd08261         237 NPASM-EEAVELVAHGGRVVLVGLSK  261 (337)
T ss_pred             CHHHH-HHHHHHHhcCCEEEEEcCCC
Confidence            65555 36788999999999887543

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=96.30  E-value=0.0069  Score=69.11  Aligned_cols=67  Identities=16%  Similarity=0.276  Sum_probs=55.3

Q ss_pred             CcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeC----HHHH-----hcCCcEEEEcCCCc
Q psy4626          77 GKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVK----LNEV-----IRTVDIVVTATGNK  143 (542)
Q Consensus        77 GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~----l~e~-----l~~aDvVi~atG~~  143 (542)
                      .+.|+|+|||++|+.+++.|+..|.++++.|.||.+...+...|+.+..    -.+.     +.++|.++.++++.
T Consensus       400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vvv~~~d~  475 (621)
T PRK03562        400 QPRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDP  475 (621)
T ss_pred             cCcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhcCCeEEEEeCCCHHHHHhcCCCcCCEEEEEeCCH
Confidence            4689999999999999999999999999999999998877778876542    1122     46899999988653

>cd08288 MDR_yhdh Yhdh putative quinone oxidoreductases

Probab=96.28  E-value=0.022  Score=58.17  Aligned_cols=89  Identities=21%  Similarity=0.235  Sum_probs=67.1

Q ss_pred             cCcEEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce-eeCHH---H----Hh-cCCcEEEEcCCCccc
Q psy4626          76 GGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVKLN---E----VI-RTVDIVVTATGNKNV  145 (542)
Q Consensus        76 ~GktVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~-v~~l~---e----~l-~~aDvVi~atG~~~l  145 (542)
                      .|++|+|.|. |.+|..+++.++.+|++|+++..++.+...+...|+. +++..   .    +. .+.|.++++.|.. .
T Consensus       146 ~~~~vlI~ga~g~vg~~~~~~A~~~G~~vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~  224 (324)
T cd08288         146 GDGPVLVTGAAGGVGSVAVALLARLGYEVVASTGRPEEADYLRSLGASEIIDRAELSEPGRPLQKERWAGAVDTVGGH-T  224 (324)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHhcCCCEEEEcchhhHhhhhhccCcccEEEECCcHH-H
Confidence            5789999998 9999999999999999999988888777666666653 22211   1    11 2567889998763 2


Q ss_pred             CCHHHHhccCCCeEEEeccCC
Q psy4626         146 VTREHMDKMKNGCVVCNMGHS  166 (542)
Q Consensus       146 I~~e~l~~mk~GailvnvG~g  166 (542)
                      + ...+..++.++.++..|+.
T Consensus       225 ~-~~~~~~~~~~g~~~~~G~~  244 (324)
T cd08288         225 L-ANVLAQTRYGGAVAACGLA  244 (324)
T ss_pred             H-HHHHHHhcCCCEEEEEEec
Confidence            3 2567788898999998875

Yhdh putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catal

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=96.27  E-value=0.0077  Score=67.67  Aligned_cols=65  Identities=20%  Similarity=0.262  Sum_probs=52.8

Q ss_pred             cEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCH----HHH-----hcCCcEEEEcCCC
Q psy4626          78 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKL----NEV-----IRTVDIVVTATGN  142 (542)
Q Consensus        78 ktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l----~e~-----l~~aDvVi~atG~  142 (542)
                      ..++|+|||++|+.+++.|+..|.+|+++|.|+.+..++.+.|+.++.-    ++.     ++++|.++.++++
T Consensus       418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~g~~~i~GD~~~~~~L~~a~i~~a~~viv~~~~  491 (558)
T PRK10669        418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRERGIRAVLGNAANEEIMQLAHLDCARWLLLTIPN  491 (558)
T ss_pred             CCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCeEEEcCCCCHHHHHhcCccccCEEEEEcCC
Confidence            5789999999999999999999999999999999888887788765421    122     4688988776654

>PRK06928 pyrroline-5-carboxylate reductase; Reviewed

Probab=96.25  E-value=0.013  Score=60.10  Aligned_cols=87  Identities=11%  Similarity=0.027  Sum_probs=58.9

Q ss_pred             cEEEEEcCChhHHHHHHHHHhCC----CEEEEEeCCchh-hhhh-hcC-Cce-eeCHHHHhcCCcEEEEcCCCcccCCHH
Q psy4626          78 KQVVLCGYGEVGKGCCQSLKGLG----CVIYITEIDPIC-ALQA-CMD-GFS-VVKLNEVIRTVDIVVTATGNKNVVTRE  149 (542)
Q Consensus        78 ktVvViG~G~IG~~vA~~l~~~G----a~Viv~d~dp~r-~~~A-~~~-G~~-v~~l~e~l~~aDvVi~atG~~~lI~~e  149 (542)
                      .+++|+|+|.+|..++..+...|    .+|+++++++.. .... ... +.. ..+..+++..+|+||.|+.... + .+
T Consensus         2 ~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~~~~~l~~~~~~~~~~~~~~e~~~~aDvVilavpp~~-~-~~   79 (277)
T PRK06928          2 EKIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKNEHFNQLYDKYPTVELADNEAEIFTKCDHSFICVPPLA-V-LP   79 (277)
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcHHHHHHHHHHcCCeEEeCCHHHHHhhCCEEEEecCHHH-H-HH
Confidence            36999999999999999999888    589999876532 2211 112 233 3456677889999999875432 2 23


Q ss_pred             HHh----ccCCCeEEEeccCC
Q psy4626         150 HMD----KMKNGCVVCNMGHS  166 (542)
Q Consensus       150 ~l~----~mk~GailvnvG~g  166 (542)
                      .++    .++++..++++.-|
T Consensus        80 vl~~l~~~l~~~~~ivS~~aG  100 (277)
T PRK06928         80 LLKDCAPVLTPDRHVVSIAAG  100 (277)
T ss_pred             HHHHHHhhcCCCCEEEEECCC
Confidence            333    35677777776655

>PRK07634 pyrroline-5-carboxylate reductase; Reviewed

Probab=96.25  E-value=0.016  Score=57.59  Aligned_cols=89  Identities=13%  Similarity=0.151  Sum_probs=58.3

Q ss_pred             cCcEEEEEcCChhHHHHHHHHHhCC---CE-EEEEeC-Cchhhhhhh-cCCcee-eCHHHHhcCCcEEEEcCCCcccCCH
Q psy4626          76 GGKQVVLCGYGEVGKGCCQSLKGLG---CV-IYITEI-DPICALQAC-MDGFSV-VKLNEVIRTVDIVVTATGNKNVVTR  148 (542)
Q Consensus        76 ~GktVvViG~G~IG~~vA~~l~~~G---a~-Viv~d~-dp~r~~~A~-~~G~~v-~~l~e~l~~aDvVi~atG~~~lI~~  148 (542)
                      ...+|+|+|+|.+|..++..+...|   .+ ++++++ ++.+..... ..+... .+.+++++++|+||.|+... .+ .
T Consensus         3 ~~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DiViiavp~~-~~-~   80 (245)
T PRK07634          3 KKHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQARYNVSTTTDWKQHVTSVDTIVLAMPPS-AH-E   80 (245)
T ss_pred             CCCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHHcCcEEeCChHHHHhcCCEEEEecCHH-HH-H
Confidence            3568999999999999999987766   33 777775 455544332 345543 45677889999999997543 22 2


Q ss_pred             HHHhccC---CCeEEEeccCC
Q psy4626         149 EHMDKMK---NGCVVCNMGHS  166 (542)
Q Consensus       149 e~l~~mk---~GailvnvG~g  166 (542)
                      +.++.++   ++..++++.-|
T Consensus        81 ~v~~~l~~~~~~~~vis~~~g  101 (245)
T PRK07634         81 ELLAELSPLLSNQLVVTVAAG  101 (245)
T ss_pred             HHHHHHHhhccCCEEEEECCC
Confidence            3333332   34566766544

>cd05195 enoyl_red enoyl reductase of polyketide synthase

Probab=96.22  E-value=0.043  Score=53.93  Aligned_cols=91  Identities=18%  Similarity=0.237  Sum_probs=68.0

Q ss_pred             cccCcEEEEEc-CChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCC--ce-eeC-----HHH----Hh--cCCcEEEE
Q psy4626          74 MFGGKQVVLCG-YGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDG--FS-VVK-----LNE----VI--RTVDIVVT  138 (542)
Q Consensus        74 ~l~GktVvViG-~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G--~~-v~~-----l~e----~l--~~aDvVi~  138 (542)
                      ...|.+|+|.| .|.+|..+++.++.+|++|+++..++.+...+...|  .. +.+     ..+    ..  ++.|++++
T Consensus       106 ~~~g~~vlv~g~~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~  185 (293)
T cd05195         106 LQKGESVLIHAAAGGVGQAAIQLAQHLGAEVFATVGSEEKREFLRELGGPVDHIFSSRDLSFADGILRATGGRGVDVVLN  185 (293)
T ss_pred             cCCCCEEEEecCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhCCCcceEeecCchhHHHHHHHHhCCCCceEEEe
Confidence            45799999997 699999999999999999999987766655554444  21 221     111    22  36899999


Q ss_pred             cCCCcccCCHHHHhccCCCeEEEeccCC
Q psy4626         139 ATGNKNVVTREHMDKMKNGCVVCNMGHS  166 (542)
Q Consensus       139 atG~~~lI~~e~l~~mk~GailvnvG~g  166 (542)
                      +.|.. .+ ...++.+++++.++.+|..
T Consensus       186 ~~~~~-~~-~~~~~~l~~~g~~v~~g~~  211 (293)
T cd05195         186 SLSGE-LL-RASWRCLAPFGRFVEIGKR  211 (293)
T ss_pred             CCCch-HH-HHHHHhcccCceEEEeecc
Confidence            99876 44 3678999999999988854

Putative enoyl reductase of polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase

>KOG4230|consensus

Probab=96.21  E-value=0.015  Score=64.33  Aligned_cols=87  Identities=29%  Similarity=0.407  Sum_probs=71.2

Q ss_pred             HHHHHHhhcCccccCcEEEEEcCCh-hHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCCcEEEEcCC
Q psy4626          63 IIDSLKRSTDVMFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATG  141 (542)
Q Consensus        63 ~~~ai~r~~~~~l~GktVvViG~G~-IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~aDvVi~atG  141 (542)
                      ++.-+..+ +..+.|+.++|+|--. +|.-++..|+-..+.|++|..             .+-++.+.+..+|+||.+.|
T Consensus       149 cmeLlk~a-~v~v~Gk~aVVlGRS~IVG~Pia~LL~~~NaTVTiCHS-------------KT~~lae~v~~ADIvIvAiG  214 (935)
T KOG4230|consen  149 CMELLKEA-GVFVAGKNAVVLGRSKIVGSPIAALLLWANATVTICHS-------------KTRNLAEKVSRADIVIVAIG  214 (935)
T ss_pred             HHHHHHHc-CCccccceeEEEecccccCChHHHHHHhcCceEEEecC-------------CCccHHHHhccCCEEEEEcC
Confidence            33334444 5789999999999876 599999999999999999972             23456777889999999999


Q ss_pred             CcccCCHHHHhccCCCeEEEeccCC
Q psy4626         142 NKNVVTREHMDKMKNGCVVCNMGHS  166 (542)
Q Consensus       142 ~~~lI~~e~l~~mk~GailvnvG~g  166 (542)
                      -++.+..   +++|+|+++|.+|..
T Consensus       215 ~PefVKg---dWiKpGavVIDvGIN  236 (935)
T KOG4230|consen  215 QPEFVKG---DWIKPGAVVIDVGIN  236 (935)
T ss_pred             Ccceeec---ccccCCcEEEEcccc
Confidence            9999864   578999999999964

>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e

Probab=96.19  E-value=0.026  Score=57.35  Aligned_cols=108  Identities=17%  Similarity=0.222  Sum_probs=74.9

Q ss_pred             hhcCccccCcEEEEEcCChhHHHHHHHHHhC----CC-------EEEEEeCCc-----------hhhhhhhcCCc--eee
Q psy4626          69 RSTDVMFGGKQVVLCGYGEVGKGCCQSLKGL----GC-------VIYITEIDP-----------ICALQACMDGF--SVV  124 (542)
Q Consensus        69 r~~~~~l~GktVvViG~G~IG~~vA~~l~~~----Ga-------~Viv~d~dp-----------~r~~~A~~~G~--~v~  124 (542)
                      |.++..+...+++++|.|.-|.++|..+...    |.       +++++|...           .+...++...-  ...
T Consensus        17 ~~~g~~l~d~riv~~GAGsAg~gia~ll~~~~~~~G~~~~eA~~~i~lvD~~Gll~~~r~~l~~~~~~~a~~~~~~~~~~   96 (255)
T PF03949_consen   17 RVTGKKLSDQRIVFFGAGSAGIGIARLLVAAMVREGLSEEEARKRIWLVDSKGLLTDDREDLNPHKKPFARKTNPEKDWG   96 (255)
T ss_dssp             HHHTS-GGG-EEEEEB-SHHHHHHHHHHHHHHHCTTS-HHHHHTTEEEEETTEEEBTTTSSHSHHHHHHHBSSSTTT--S
T ss_pred             HHhCCCHHHcEEEEeCCChhHHHHHHHHHHHHHHhcCCHHHHhccEEEEeccceEeccCccCChhhhhhhccCccccccc
Confidence            4456778999999999999999999998877    88       488888653           22222322211  124


Q ss_pred             CHHHHhcCC--cEEEEcCCCcccCCHHHHhccCC---CeEEEeccCCCc--ccChHhhc
Q psy4626         125 KLNEVIRTV--DIVVTATGNKNVVTREHMDKMKN---GCVVCNMGHSNT--EIDVNSLR  176 (542)
Q Consensus       125 ~l~e~l~~a--DvVi~atG~~~lI~~e~l~~mk~---GailvnvG~g~~--eid~~aL~  176 (542)
                      ++.++++++  |++|-++|.+++++++.++.|.+   .-+|.-.+....  |+..+...
T Consensus        97 ~L~eav~~~kPtvLIG~S~~~g~ft~evv~~Ma~~~erPIIF~LSNPt~~aE~~peda~  155 (255)
T PF03949_consen   97 SLLEAVKGAKPTVLIGLSGQGGAFTEEVVRAMAKHNERPIIFPLSNPTPKAECTPEDAY  155 (255)
T ss_dssp             SHHHHHHCH--SEEEECSSSTTSS-HHHHHHCHHHSSSEEEEE-SSSCGGSSS-HHHHH
T ss_pred             CHHHHHHhcCCCEEEEecCCCCcCCHHHHHHHhccCCCCEEEECCCCCCcccCCHHHHH
Confidence            788888766  99999999999999999999976   777777776644  66665443

g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=96.17  E-value=0.013  Score=67.88  Aligned_cols=86  Identities=23%  Similarity=0.283  Sum_probs=59.2

Q ss_pred             cEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhh-----------cCCc-------------ee-eCHHHHhcC
Q psy4626          78 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQAC-----------MDGF-------------SV-VKLNEVIRT  132 (542)
Q Consensus        78 ktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~-----------~~G~-------------~v-~~l~e~l~~  132 (542)
                      ++|+|+|.|.+|.++|..+...|.+|+++|+++..+..+.           ..|.             .. .++ +.+.+
T Consensus       314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  392 (714)
T TIGR02437       314 KQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTLSY-AGFDN  392 (714)
T ss_pred             ceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCH-HHhcC
Confidence            5899999999999999999999999999999987543321           1110             01 112 34689


Q ss_pred             CcEEEEcCC-C----cccCCHHHHhccCCCeEEE-eccC
Q psy4626         133 VDIVVTATG-N----KNVVTREHMDKMKNGCVVC-NMGH  165 (542)
Q Consensus       133 aDvVi~atG-~----~~lI~~e~l~~mk~Gailv-nvG~  165 (542)
                      ||+||++.- .    ..++ ++.=+.+++++++. |++.
T Consensus       393 aDlViEav~E~l~~K~~vf-~~l~~~~~~~~ilasnTS~  430 (714)
T TIGR02437       393 VDIVVEAVVENPKVKAAVL-AEVEQHVREDAILASNTST  430 (714)
T ss_pred             CCEEEEcCcccHHHHHHHH-HHHHhhCCCCcEEEECCCC
Confidence            999999853 1    1222 23334568999988 5553

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>PRK05562 precorrin-2 dehydrogenase; Provisional

Probab=96.16  E-value=0.014  Score=58.28  Aligned_cols=91  Identities=14%  Similarity=0.153  Sum_probs=60.0

Q ss_pred             ccccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhh--hhhhcCCceeeC--H-HHHhcCCcEEEEcCCCcccCC
Q psy4626          73 VMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICA--LQACMDGFSVVK--L-NEVIRTVDIVVTATGNKNVVT  147 (542)
Q Consensus        73 ~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~--~~A~~~G~~v~~--l-~e~l~~aDvVi~atG~~~lI~  147 (542)
                      ..+.|++|+|+|.|.++..=+..|...|++|+|+-.+....  ..+....+....  . .+-+.++++||.||+.+ -+|
T Consensus        21 l~~~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~~el~~l~~~~~i~~~~r~~~~~dl~g~~LViaATdD~-~vN   99 (223)
T PRK05562         21 LLSNKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFSKEFLDLKKYGNLKLIKGNYDKEFIKDKHLIVIATDDE-KLN   99 (223)
T ss_pred             EECCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCCHHHHHHHhCCCEEEEeCCCChHHhCCCcEEEECCCCH-HHH
Confidence            34679999999999999888888989999999985332211  112222222221  1 23468899999999765 455


Q ss_pred             HHHHhccCCCeEEEecc
Q psy4626         148 REHMDKMKNGCVVCNMG  164 (542)
Q Consensus       148 ~e~l~~mk~GailvnvG  164 (542)
                      .......+.-+.++|+.
T Consensus       100 ~~I~~~a~~~~~lvn~v  116 (223)
T PRK05562        100 NKIRKHCDRLYKLYIDC  116 (223)
T ss_pred             HHHHHHHHHcCCeEEEc
Confidence            55555556656666654

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=96.16  E-value=0.017  Score=63.65  Aligned_cols=36  Identities=28%  Similarity=0.510  Sum_probs=33.3

Q ss_pred             ccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCc
Q psy4626          75 FGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDP  110 (542)
Q Consensus        75 l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp  110 (542)
                      ..|++|+|+|.|+.|..+|..|+..|.+|+++|..+
T Consensus       139 ~~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~  174 (467)
T TIGR01318       139 PTGKRVAVIGAGPAGLACADILARAGVQVVVFDRHP  174 (467)
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCC
Confidence            368999999999999999999999999999999765

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>PRK14027 quinate/shikimate dehydrogenase; Provisional

Probab=96.15  E-value=0.018  Score=59.45  Aligned_cols=79  Identities=24%  Similarity=0.220  Sum_probs=55.0

Q ss_pred             HHHHHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCCC-EEEEEeCCchhhhhhh-cC----Cc---eeeCH---HH
Q psy4626          61 ESIIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQAC-MD----GF---SVVKL---NE  128 (542)
Q Consensus        61 ~s~~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga-~Viv~d~dp~r~~~A~-~~----G~---~v~~l---~e  128 (542)
                      .++..++.+. .....|++++|+|+|-.+++++..|...|+ +|+++++++.|+..-. ..    +.   ...+.   .+
T Consensus       112 ~Gf~~~L~~~-~~~~~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La~~~~~~~~~~~~~~~~~~~~~~  190 (283)
T PRK14027        112 SGFGRGMEEG-LPNAKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIED  190 (283)
T ss_pred             HHHHHHHHhc-CcCcCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhccCcceEEecCHhHHHH
Confidence            4445555432 224678999999999999999999999998 8999999987764321 11    11   12222   23


Q ss_pred             HhcCCcEEEEcC
Q psy4626         129 VIRTVDIVVTAT  140 (542)
Q Consensus       129 ~l~~aDvVi~at  140 (542)
                      .+..+|+||+||
T Consensus       191 ~~~~~divINaT  202 (283)
T PRK14027        191 VIAAADGVVNAT  202 (283)
T ss_pred             HHhhcCEEEEcC
Confidence            456789999987

>cd08241 QOR1 Quinone oxidoreductase (QOR)

Probab=96.15  E-value=0.021  Score=57.35  Aligned_cols=91  Identities=25%  Similarity=0.336  Sum_probs=68.6

Q ss_pred             cccCcEEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce-eeC-----HHH----Hh--cCCcEEEEcC
Q psy4626          74 MFGGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVK-----LNE----VI--RTVDIVVTAT  140 (542)
Q Consensus        74 ~l~GktVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~-v~~-----l~e----~l--~~aDvVi~at  140 (542)
                      ...|++++|.|. |.+|..+++.++..|++|++++.++.+...+...|.. +.+     ..+    ..  ...|+++++.
T Consensus       137 ~~~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~d~v~~~~  216 (323)
T cd08241         137 LQPGETVLVLGAAGGVGLAAVQLAKALGARVIAAASSEEKLALARALGADHVIDYRDPDLRERVKALTGGRGVDVVYDPV  216 (323)
T ss_pred             CCCCCEEEEEcCCchHHHHHHHHHHHhCCEEEEEeCCHHHHHHHHHcCCceeeecCCccHHHHHHHHcCCCCcEEEEECc
Confidence            457899999998 9999999999999999999998887776555545542 111     111    11  3589999998


Q ss_pred             CCcccCCHHHHhccCCCeEEEeccCC
Q psy4626         141 GNKNVVTREHMDKMKNGCVVCNMGHS  166 (542)
Q Consensus       141 G~~~lI~~e~l~~mk~GailvnvG~g  166 (542)
                      |.. .+ ...++.+++++.++++|..
T Consensus       217 g~~-~~-~~~~~~~~~~g~~v~~~~~  240 (323)
T cd08241         217 GGD-VF-EASLRSLAWGGRLLVIGFA  240 (323)
T ss_pred             cHH-HH-HHHHHhhccCCEEEEEccC
Confidence            863 33 3578899999999998854

QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic

>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase

Probab=96.14  E-value=0.02  Score=60.26  Aligned_cols=93  Identities=22%  Similarity=0.258  Sum_probs=69.8

Q ss_pred             cccCcEEEEEcCChhHHHHHHHHHhCCCE-EEEEeCCchhhhhhhcCCce-eeC-----HH----HHh--cCCcEEEEcC
Q psy4626          74 MFGGKQVVLCGYGEVGKGCCQSLKGLGCV-IYITEIDPICALQACMDGFS-VVK-----LN----EVI--RTVDIVVTAT  140 (542)
Q Consensus        74 ~l~GktVvViG~G~IG~~vA~~l~~~Ga~-Viv~d~dp~r~~~A~~~G~~-v~~-----l~----e~l--~~aDvVi~at  140 (542)
                      ...|.+|+|.|.|.+|..+++.++.+|++ |++++.++.+...+...|+. +++     ..    +..  +..|++++++
T Consensus       180 ~~~g~~vLI~g~g~vG~a~i~lak~~G~~~Vi~~~~~~~~~~~~~~~g~~~vv~~~~~~~~~~l~~~~~~~~vd~vld~~  259 (363)
T cd08279         180 VRPGDTVAVIGCGGVGLNAIQGARIAGASRIIAVDPVPEKLELARRFGATHTVNASEDDAVEAVRDLTDGRGADYAFEAV  259 (363)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHhCCeEEeCCCCccHHHHHHHHcCCCCCCEEEEcC
Confidence            45789999999999999999999999996 88888777776555555543 221     11    122  4589999998


Q ss_pred             CCcccCCHHHHhccCCCeEEEeccCCC
Q psy4626         141 GNKNVVTREHMDKMKNGCVVCNMGHSN  167 (542)
Q Consensus       141 G~~~lI~~e~l~~mk~GailvnvG~g~  167 (542)
                      |....+ .+.++.+++++.++..|..+
T Consensus       260 ~~~~~~-~~~~~~l~~~G~~v~~g~~~  285 (363)
T cd08279         260 GRAATI-RQALAMTRKGGTAVVVGMGP  285 (363)
T ss_pred             CChHHH-HHHHHHhhcCCeEEEEecCC
Confidence            855455 36789999999999887543

Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me

>cd05276 p53_inducible_oxidoreductase PIG3 p53-inducible quinone oxidoreductase

Probab=96.13  E-value=0.042  Score=55.06  Aligned_cols=100  Identities=18%  Similarity=0.213  Sum_probs=71.4

Q ss_pred             HHHHHhhcCccccCcEEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce-eeC-----HHH----Hh--
Q psy4626          64 IDSLKRSTDVMFGGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVK-----LNE----VI--  130 (542)
Q Consensus        64 ~~ai~r~~~~~l~GktVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~-v~~-----l~e----~l--  130 (542)
                      ++++.+.. ....|++|+|.|. |.+|+.+++.++..|++|++++.++.+...+...|.. +.+     ..+    ..  
T Consensus       128 ~~~~~~~~-~~~~~~~vlv~g~~~~ig~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  206 (323)
T cd05276         128 WQNLFQLG-GLKAGETVLIHGGASGVGTAAIQLAKALGARVIATAGSEEKLEACRALGADVAINYRTEDFAEEVKEATGG  206 (323)
T ss_pred             HHHHHHhc-CCCCCCEEEEEcCcChHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHcCCCEEEeCCchhHHHHHHHHhCC
Confidence            44444332 2357899999996 8999999999999999999998877666555545542 211     111    12  


Q ss_pred             cCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCC
Q psy4626         131 RTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHS  166 (542)
Q Consensus       131 ~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g  166 (542)
                      ++.|++++++|... + ...++.+++++.++++|..
T Consensus       207 ~~~d~vi~~~g~~~-~-~~~~~~~~~~g~~i~~~~~  240 (323)
T cd05276         207 RGVDVILDMVGGDY-L-ARNLRALAPDGRLVLIGLL  240 (323)
T ss_pred             CCeEEEEECCchHH-H-HHHHHhhccCCEEEEEecC
Confidence            36899999988654 3 3578888999999988754

PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=96.13  E-value=0.0096  Score=67.67  Aligned_cols=88  Identities=16%  Similarity=0.116  Sum_probs=63.5

Q ss_pred             CcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeC----HHHH-----hcCCcEEEEcCCCcccC-
Q psy4626          77 GKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVK----LNEV-----IRTVDIVVTATGNKNVV-  146 (542)
Q Consensus        77 GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~----l~e~-----l~~aDvVi~atG~~~lI-  146 (542)
                      ...|+|+|||++|+.+++.|...|.++++.|.||.+..++...|+.+..    -.+.     +.+||.++.++++...- 
T Consensus       400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vv~~~~d~~~n~  479 (601)
T PRK03659        400 KPQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKYGYKVYYGDATQLELLRAAGAEKAEAIVITCNEPEDTM  479 (601)
T ss_pred             cCCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhCCCeEEEeeCCCHHHHHhcCCccCCEEEEEeCCHHHHH
Confidence            3579999999999999999999999999999999988878778876531    1122     47899999988754221 


Q ss_pred             -CHHHHhccCCCeEEEecc
Q psy4626         147 -TREHMDKMKNGCVVCNMG  164 (542)
Q Consensus       147 -~~e~l~~mk~GailvnvG  164 (542)
                       -....+.+.|...++--.
T Consensus       480 ~i~~~~r~~~p~~~IiaRa  498 (601)
T PRK03659        480 KIVELCQQHFPHLHILARA  498 (601)
T ss_pred             HHHHHHHHHCCCCeEEEEe
Confidence             012344454555555433

>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]

Probab=96.07  E-value=0.023  Score=58.76  Aligned_cols=103  Identities=19%  Similarity=0.278  Sum_probs=66.2

Q ss_pred             HHHHHHHHhh-cCccccCcEEEEEcCChhHHHHHHHHHhCCC-EEEEEeCCchhhhhhh-cCC---c--eeeCHHHH--h
Q psy4626          61 ESIIDSLKRS-TDVMFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQAC-MDG---F--SVVKLNEV--I  130 (542)
Q Consensus        61 ~s~~~ai~r~-~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga-~Viv~d~dp~r~~~A~-~~G---~--~v~~l~e~--l  130 (542)
                      .++..++.+. ......|++++|+|+|-.+++++..|+..|+ +|+|+++++.|+.+.. ..+   .  ......+.  .
T Consensus       109 ~G~~~~L~~~~~~~~~~~~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~~~~~~~~~~~~~~~~~~~~~  188 (283)
T COG0169         109 IGFLRALKEFGLPVDVTGKRVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEELADLFGELGAAVEAAALADLEGL  188 (283)
T ss_pred             HHHHHHHHhcCCCcccCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhcccccccccccccccc
Confidence            4445555543 2245579999999999999999999999996 8999999998865432 212   1  11222221  2


Q ss_pred             cCCcEEEEcCCC--cc-----cCCHHHHhccCCCeEEEeccCC
Q psy4626         131 RTVDIVVTATGN--KN-----VVTREHMDKMKNGCVVCNMGHS  166 (542)
Q Consensus       131 ~~aDvVi~atG~--~~-----lI~~e~l~~mk~GailvnvG~g  166 (542)
                      ..+|++|+||..  .+     .+.   .+.++++.++..+=-.
T Consensus       189 ~~~dliINaTp~Gm~~~~~~~~~~---~~~l~~~~~v~D~vY~  228 (283)
T COG0169         189 EEADLLINATPVGMAGPEGDSPVP---AELLPKGAIVYDVVYN  228 (283)
T ss_pred             cccCEEEECCCCCCCCCCCCCCCc---HHhcCcCCEEEEeccC
Confidence            269999998731  11     121   4556677776655433

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=96.06  E-value=0.029  Score=57.94  Aligned_cols=48  Identities=21%  Similarity=0.249  Sum_probs=38.5

Q ss_pred             HHHHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCCCE-EEEEeCCc
Q psy4626          62 SIIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCV-IYITEIDP  110 (542)
Q Consensus        62 s~~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga~-Viv~d~dp  110 (542)
                      ++..++++. +..+.|++++|+|+|-+|+.++..|...|++ |+++++++
T Consensus       112 G~~~~l~~~-~~~~~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~  160 (289)
T PRK12548        112 GFVRNLREH-GVDVKGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKD  160 (289)
T ss_pred             HHHHHHHhc-CCCcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence            344455432 2346799999999999999999999999995 99999986

>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.05  E-value=0.023  Score=62.30  Aligned_cols=69  Identities=14%  Similarity=0.138  Sum_probs=51.4

Q ss_pred             ccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhh-----hhhhcCCceeeC---HHHHhcCCcEEEEcCCCc
Q psy4626          75 FGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICA-----LQACMDGFSVVK---LNEVIRTVDIVVTATGNK  143 (542)
Q Consensus        75 l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~-----~~A~~~G~~v~~---l~e~l~~aDvVi~atG~~  143 (542)
                      +.+++|+|+|+|..|+.+|+.|+..|++|+++|.++...     ......|+.+..   ..+.+.++|+||.++|-+
T Consensus        12 ~~~~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~dlVV~Spgi~   88 (458)
T PRK01710         12 IKNKKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKSEEELGEVSNELKELGVKLVLGENYLDKLDGFDVIFKTPSMR   88 (458)
T ss_pred             hcCCeEEEEcccHHHHHHHHHHHHCCCEEEEECCCCCccchHHHHHHHhCCCEEEeCCCChHHhccCCEEEECCCCC
Confidence            458899999999999999999999999999999765311     123345665431   234457899999887743

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=96.03  E-value=0.016  Score=62.87  Aligned_cols=64  Identities=19%  Similarity=0.282  Sum_probs=50.1

Q ss_pred             EEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhc-CCceeeC--------HHHH-hcCCcEEEEcCCC
Q psy4626          79 QVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACM-DGFSVVK--------LNEV-IRTVDIVVTATGN  142 (542)
Q Consensus        79 tVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~-~G~~v~~--------l~e~-l~~aDvVi~atG~  142 (542)
                      +++|+|+|.+|+.+++.|...|.+|+++|.++.+...+.. .|+.++.        ++++ +..+|.++.+++.
T Consensus         2 ~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~~~   75 (453)
T PRK09496          2 KIIIVGAGQVGYTLAENLSGENNDVTVIDTDEERLRRLQDRLDVRTVVGNGSSPDVLREAGAEDADLLIAVTDS   75 (453)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcCEEEEEeCCCCHHHHHHcCCCcCCEEEEecCC
Confidence            6999999999999999999999999999999987665543 4554331        2333 5789998888764

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=96.01  E-value=0.019  Score=66.59  Aligned_cols=86  Identities=21%  Similarity=0.290  Sum_probs=59.2

Q ss_pred             cEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhh-----------cCC-------------cee-eCHHHHhcC
Q psy4626          78 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQAC-----------MDG-------------FSV-VKLNEVIRT  132 (542)
Q Consensus        78 ktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~-----------~~G-------------~~v-~~l~e~l~~  132 (542)
                      ++|+|+|.|.+|.++|..+...|.+|+++|+++..+..+.           ..|             ... .++ +.+++
T Consensus       314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  392 (715)
T PRK11730        314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTLDY-AGFER  392 (715)
T ss_pred             ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCH-HHhcC
Confidence            5899999999999999999999999999999987543221           111             011 122 44689


Q ss_pred             CcEEEEcCCC-----cccCCHHHHhccCCCeEEE-eccC
Q psy4626         133 VDIVVTATGN-----KNVVTREHMDKMKNGCVVC-NMGH  165 (542)
Q Consensus       133 aDvVi~atG~-----~~lI~~e~l~~mk~Gailv-nvG~  165 (542)
                      ||+||++.--     ..++ .+.-+.+++++++. |++.
T Consensus       393 aDlViEav~E~l~~K~~vf-~~l~~~~~~~~ilasNTSs  430 (715)
T PRK11730        393 VDVVVEAVVENPKVKAAVL-AEVEQKVREDTILASNTST  430 (715)
T ss_pred             CCEEEecccCcHHHHHHHH-HHHHhhCCCCcEEEEcCCC
Confidence            9999998531     1222 23334568999888 5553

>cd08273 MDR8 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=96.00  E-value=0.058  Score=55.18  Aligned_cols=101  Identities=19%  Similarity=0.244  Sum_probs=72.7

Q ss_pred             HHHHHHhhcCccccCcEEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeC-----HHH--Hh-cCC
Q psy4626          63 IIDSLKRSTDVMFGGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVK-----LNE--VI-RTV  133 (542)
Q Consensus        63 ~~~ai~r~~~~~l~GktVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~-----l~e--~l-~~a  133 (542)
                      .+.++.+.. ....|++|+|.|. |.+|..+++.++..|++|+++.. +.+...+...|.....     ..+  .. .+.
T Consensus       127 a~~~l~~~~-~~~~g~~vlI~g~~g~ig~~~~~~a~~~g~~v~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  204 (331)
T cd08273         127 AYQMLHRAA-KVLTGQRVLIHGASGGVGQALLELALLAGAEVYGTAS-ERNHAALRELGATPIDYRTKDWLPAMLTPGGV  204 (331)
T ss_pred             HHHHHHHhc-CCCCCCEEEEECCCcHHHHHHHHHHHHcCCEEEEEeC-HHHHHHHHHcCCeEEcCCCcchhhhhccCCCc
Confidence            344443322 3457999999997 99999999999999999999875 6665555556643221     111  11 368


Q ss_pred             cEEEEcCCCcccCCHHHHhccCCCeEEEeccCCC
Q psy4626         134 DIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSN  167 (542)
Q Consensus       134 DvVi~atG~~~lI~~e~l~~mk~GailvnvG~g~  167 (542)
                      |+++++.|... + ...++.+++++.++.+|...
T Consensus       205 d~vl~~~~~~~-~-~~~~~~l~~~g~~v~~g~~~  236 (331)
T cd08273         205 DVVFDGVGGES-Y-EESYAALAPGGTLVCYGGNS  236 (331)
T ss_pred             eEEEECCchHH-H-HHHHHHhcCCCEEEEEccCC
Confidence            99999988765 4 36789999999999988653

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>TIGR01921 DAP-DH diaminopimelate dehydrogenase

Probab=95.99  E-value=0.018  Score=60.47  Aligned_cols=84  Identities=12%  Similarity=0.182  Sum_probs=58.0

Q ss_pred             cEEEEEcCChhHHHHHHHHHhC-CCEEEE-EeCCchhhhhhhcCCc-eeeCHHHHhcCCcEEEEcCCCcccCCHHHHhcc
Q psy4626          78 KQVVLCGYGEVGKGCCQSLKGL-GCVIYI-TEIDPICALQACMDGF-SVVKLNEVIRTVDIVVTATGNKNVVTREHMDKM  154 (542)
Q Consensus        78 ktVvViG~G~IG~~vA~~l~~~-Ga~Viv-~d~dp~r~~~A~~~G~-~v~~l~e~l~~aDvVi~atG~~~lI~~e~l~~m  154 (542)
                      -+|+|+|+|.||+.++..+... +++++. +++++..... ...+. ...+.++++.++|+|+.|+++..-. ....+.+
T Consensus         4 IRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~~~~~~~-~~~~v~~~~d~~e~l~~iDVViIctPs~th~-~~~~~~L   81 (324)
T TIGR01921         4 IRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRRGAETLD-TETPVYAVADDEKHLDDVDVLILCMGSATDI-PEQAPYF   81 (324)
T ss_pred             cEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCCcHHHHh-hcCCccccCCHHHhccCCCEEEEcCCCccCH-HHHHHHH
Confidence            4899999999999999998765 787765 6887522221 12232 2345556678899999998754323 3566778


Q ss_pred             CCCeEEEec
Q psy4626         155 KNGCVVCNM  163 (542)
Q Consensus       155 k~Gailvnv  163 (542)
                      +.|.-+|..
T Consensus        82 ~aG~NVV~s   90 (324)
T TIGR01921        82 AQFANTVDS   90 (324)
T ss_pred             HcCCCEEEC
Confidence            888777765

This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.

>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot

Probab=95.99  E-value=0.019  Score=50.42  Aligned_cols=81  Identities=23%  Similarity=0.280  Sum_probs=55.9

Q ss_pred             EEEEEcCChhHHHHHHHHHhC--CCEEE-EEeCCchhhhh-hhcCCce-eeCHHHHhc--CCcEEEEcCCCcccCCHHHH
Q psy4626          79 QVVLCGYGEVGKGCCQSLKGL--GCVIY-ITEIDPICALQ-ACMDGFS-VVKLNEVIR--TVDIVVTATGNKNVVTREHM  151 (542)
Q Consensus        79 tVvViG~G~IG~~vA~~l~~~--Ga~Vi-v~d~dp~r~~~-A~~~G~~-v~~l~e~l~--~aDvVi~atG~~~lI~~e~l  151 (542)
                      +++|+|+|.+|+.-...++..  +.++. ++|+++.+... +...|+. +.+.++++.  ..|+|+.+|.+..-. .-..
T Consensus         2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~I~tp~~~h~-~~~~   80 (120)
T PF01408_consen    2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKYGIPVYTDLEELLADEDVDAVIIATPPSSHA-EIAK   80 (120)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTSEEESSHHHHHHHTTESEEEEESSGGGHH-HHHH
T ss_pred             EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHhcccchhHHHHHHHhhcCCEEEEecCCcchH-HHHH
Confidence            689999999999988777766  45654 68999987664 4456766 456888875  799999997653211 2234


Q ss_pred             hccCCCeEE
Q psy4626         152 DKMKNGCVV  160 (542)
Q Consensus       152 ~~mk~Gail  160 (542)
                      ..++.|.-+
T Consensus        81 ~~l~~g~~v   89 (120)
T PF01408_consen   81 KALEAGKHV   89 (120)
T ss_dssp             HHHHTTSEE
T ss_pred             HHHHcCCEE
Confidence            445555533

GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....

>PRK04148 hypothetical protein; Provisional

Probab=95.99  E-value=0.018  Score=53.07  Aligned_cols=70  Identities=16%  Similarity=0.226  Sum_probs=53.8

Q ss_pred             cCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceee--C---H-HHHhcCCcEEEEcCCCcccC
Q psy4626          76 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVV--K---L-NEVIRTVDIVVTATGNKNVV  146 (542)
Q Consensus        76 ~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~--~---l-~e~l~~aDvVi~atG~~~lI  146 (542)
                      .+++++++|.| -|..+|..|...|.+|+++|++|.....+...+.+++  +   . .+..+++|+|...--.+.+.
T Consensus        16 ~~~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~~y~~a~liysirpp~el~   91 (134)
T PRK04148         16 KNKKIVELGIG-FYFKVAKKLKESGFDVIVIDINEKAVEKAKKLGLNAFVDDLFNPNLEIYKNAKLIYSIRPPRDLQ   91 (134)
T ss_pred             cCCEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCCeEEECcCCCCCHHHHhcCCEEEEeCCCHHHH
Confidence            56899999999 8999999999999999999999987776766665533  1   1 24457888888764444444

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=95.98  E-value=0.021  Score=65.42  Aligned_cols=36  Identities=25%  Similarity=0.479  Sum_probs=33.3

Q ss_pred             ccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCc
Q psy4626          75 FGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDP  110 (542)
Q Consensus        75 l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp  110 (542)
                      ..|++|+|||.|+.|+.+|..|+..|.+|+++|..+
T Consensus       325 ~~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~  360 (654)
T PRK12769        325 KSDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHP  360 (654)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCC
Confidence            368999999999999999999999999999999764

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.97  E-value=0.02  Score=62.16  Aligned_cols=68  Identities=29%  Similarity=0.404  Sum_probs=50.3

Q ss_pred             ccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhh-----hhhcCCceeeC---HHHHhcCCcEEEEcCCC
Q psy4626          75 FGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICAL-----QACMDGFSVVK---LNEVIRTVDIVVTATGN  142 (542)
Q Consensus        75 l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~-----~A~~~G~~v~~---l~e~l~~aDvVi~atG~  142 (542)
                      +.+++|+|+|.|.+|..+|..|...|++|+++|.++....     +....|..+..   .++...++|+||.++|.
T Consensus         3 ~~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~vv~~~g~   78 (450)
T PRK14106          3 LKGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKEEDQLKEALEELGELGIELVLGEYPEEFLEGVDLVVVSPGV   78 (450)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCEEEeCCcchhHhhcCCEEEECCCC
Confidence            4689999999999999999999999999999998753211     11223444321   23445679999998875

>PRK12749 quinate/shikimate dehydrogenase; Reviewed

Probab=95.96  E-value=0.035  Score=57.47  Aligned_cols=79  Identities=25%  Similarity=0.223  Sum_probs=53.7

Q ss_pred             HHHHHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCCC-EEEEEeCCch---hhhh-hhcCC------ceeeCHH--
Q psy4626          61 ESIIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPI---CALQ-ACMDG------FSVVKLN--  127 (542)
Q Consensus        61 ~s~~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga-~Viv~d~dp~---r~~~-A~~~G------~~v~~l~--  127 (542)
                      .+++.++.+. +..+.|++++|+|+|-.++.++..+...|+ +|+++++++.   ++.. +...+      ..+.+++  
T Consensus       109 ~Gf~~~l~~~-~~~~~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~~~~~ka~~la~~~~~~~~~~~~~~~~~~~  187 (288)
T PRK12749        109 TGHIRAIKES-GFDIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQ  187 (288)
T ss_pred             HHHHHHHHhc-CCCcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCccHHHHHHHHHHHhhhccCceEEEechhhh
Confidence            3444555432 345789999999999999999999999998 8999999853   3321 21111      1233332  


Q ss_pred             ----HHhcCCcEEEEcC
Q psy4626         128 ----EVIRTVDIVVTAT  140 (542)
Q Consensus       128 ----e~l~~aDvVi~at  140 (542)
                          +.+..+|+||+||
T Consensus       188 ~~l~~~~~~aDivINaT  204 (288)
T PRK12749        188 QAFAEALASADILTNGT  204 (288)
T ss_pred             hhhhhhcccCCEEEECC
Confidence                2456789999987

>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ

Probab=95.96  E-value=0.021  Score=66.13  Aligned_cols=87  Identities=21%  Similarity=0.240  Sum_probs=57.5

Q ss_pred             cEEEEEcCChhHHHHHHHHH-hCCCEEEEEeCCchhhhhhh-----------cCC-------------ceeeCHHHHhcC
Q psy4626          78 KQVVLCGYGEVGKGCCQSLK-GLGCVIYITEIDPICALQAC-----------MDG-------------FSVVKLNEVIRT  132 (542)
Q Consensus        78 ktVvViG~G~IG~~vA~~l~-~~Ga~Viv~d~dp~r~~~A~-----------~~G-------------~~v~~l~e~l~~  132 (542)
                      ++|+|+|.|.+|.++|..+. ..|.+|+++|+++..+..+.           ..|             ....+--+.+++
T Consensus       305 ~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  384 (699)
T TIGR02440       305 KKVGILGGGLMGGGIASVTATKAGIPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGTTDYRGFKD  384 (699)
T ss_pred             cEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEeCChHHhcc
Confidence            58999999999999999887 58999999999986433221           111             111111245789


Q ss_pred             CcEEEEcCCC-----cccCCHHHHhccCCCeEEE-eccC
Q psy4626         133 VDIVVTATGN-----KNVVTREHMDKMKNGCVVC-NMGH  165 (542)
Q Consensus       133 aDvVi~atG~-----~~lI~~e~l~~mk~Gailv-nvG~  165 (542)
                      ||+||++.-.     ..++ ++.-+.+++.+++. |++.
T Consensus       385 adlViEav~E~l~~K~~v~-~~l~~~~~~~~ilasnTS~  422 (699)
T TIGR02440       385 VDIVIEAVFEDLALKHQMV-KDIEQECAAHTIFASNTSS  422 (699)
T ss_pred             CCEEEEeccccHHHHHHHH-HHHHhhCCCCcEEEeCCCC
Confidence            9999998531     1122 22334568888887 5554

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.

>cd08276 MDR7 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=95.95  E-value=0.032  Score=56.87  Aligned_cols=92  Identities=24%  Similarity=0.252  Sum_probs=69.4

Q ss_pred             cccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce-eeC------HHH----Hh--cCCcEEEEcC
Q psy4626          74 MFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVK------LNE----VI--RTVDIVVTAT  140 (542)
Q Consensus        74 ~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~-v~~------l~e----~l--~~aDvVi~at  140 (542)
                      ...|.+|+|.|.|.+|..+++.+++.|++|++++.++.+...+...|.. +++      ..+    ..  +++|+++++.
T Consensus       158 ~~~g~~vli~g~g~~g~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~  237 (336)
T cd08276         158 LKPGDTVLVQGTGGVSLFALQFAKAAGARVIATSSSDEKLERAKALGADHVINYRTTPDWGEEVLKLTGGRGVDHVVEVG  237 (336)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCEEEcCCcccCHHHHHHHHcCCCCCcEEEECC
Confidence            4578999999999999999999999999999998887766555444543 211      112    12  3699999998


Q ss_pred             CCcccCCHHHHhccCCCeEEEeccCCC
Q psy4626         141 GNKNVVTREHMDKMKNGCVVCNMGHSN  167 (542)
Q Consensus       141 G~~~lI~~e~l~~mk~GailvnvG~g~  167 (542)
                      |.. .+ ...++.+++++.++.+|..+
T Consensus       238 ~~~-~~-~~~~~~l~~~G~~v~~g~~~  262 (336)
T cd08276         238 GPG-TL-AQSIKAVAPGGVISLIGFLS  262 (336)
T ss_pred             ChH-HH-HHHHHhhcCCCEEEEEccCC
Confidence            743 34 36789999999999988653

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B

Probab=95.95  E-value=0.028  Score=52.74  Aligned_cols=61  Identities=21%  Similarity=0.358  Sum_probs=49.2

Q ss_pred             EEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceee-----C---HHHHhcCCcEEEEcCCC
Q psy4626          80 VVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVV-----K---LNEVIRTVDIVVTATGN  142 (542)
Q Consensus        80 VvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~-----~---l~e~l~~aDvVi~atG~  142 (542)
                      |+|+|. |.+|+.+++.|...|.+|++.-+++.+...  ..+.+++     +   +.++++++|+||.+.|.
T Consensus         1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~--~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~   70 (183)
T PF13460_consen    1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED--SPGVEIIQGDLFDPDSVKAALKGADAVIHAAGP   70 (183)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH--CTTEEEEESCTTCHHHHHHHHTTSSEEEECCHS
T ss_pred             eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhccc--ccccccceeeehhhhhhhhhhhhcchhhhhhhh
Confidence            689996 999999999999999999999999887664  4455433     2   34567899999998763

...

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=95.95  E-value=0.028  Score=57.67  Aligned_cols=82  Identities=17%  Similarity=0.212  Sum_probs=55.7

Q ss_pred             EEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCcee--------------eCHHHHhcCCcEEEEcCCCcc
Q psy4626          79 QVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV--------------VKLNEVIRTVDIVVTATGNKN  144 (542)
Q Consensus        79 tVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v--------------~~l~e~l~~aDvVi~atG~~~  144 (542)
                      +++|+|+|.+|..+|..|...|.+|+++++ +.+.......|..+              .+.++....+|++|.|+-+..
T Consensus         2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vilavk~~~   80 (305)
T PRK12921          2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVR-PKRAKALRERGLVIRSDHGDAVVPGPVITDPEELTGPFDLVILAVKAYQ   80 (305)
T ss_pred             eEEEECCCHHHHHHHHHHHHCCCceEEEec-HHHHHHHHhCCeEEEeCCCeEEecceeecCHHHccCCCCEEEEEecccC
Confidence            699999999999999999999999999998 55443333334321              123344578999999875433


Q ss_pred             cCCHHHHh----ccCCCeEEEec
Q psy4626         145 VVTREHMD----KMKNGCVVCNM  163 (542)
Q Consensus       145 lI~~e~l~----~mk~Gailvnv  163 (542)
                      +  .+.++    .++++..++++
T Consensus        81 ~--~~~~~~l~~~~~~~~~ii~~  101 (305)
T PRK12921         81 L--DAAIPDLKPLVGEDTVIIPL  101 (305)
T ss_pred             H--HHHHHHHHhhcCCCCEEEEe
Confidence            2  22333    34567777655

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.94  E-value=0.027  Score=61.92  Aligned_cols=71  Identities=23%  Similarity=0.224  Sum_probs=51.4

Q ss_pred             cccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhh-----hhhhcCCceeeCH--HHHhcCCcEEEEcCCCcc
Q psy4626          74 MFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICA-----LQACMDGFSVVKL--NEVIRTVDIVVTATGNKN  144 (542)
Q Consensus        74 ~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~-----~~A~~~G~~v~~l--~e~l~~aDvVi~atG~~~  144 (542)
                      ...+++|+|+|.|.+|+.+|..|+..|.+|+++|.++...     ......|+.+..-  .+....+|+||.++|.++
T Consensus        13 ~~~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~D~Vv~s~Gi~~   90 (480)
T PRK01438         13 DWQGLRVVVAGLGVSGFAAADALLELGARVTVVDDGDDERHRALAAILEALGATVRLGPGPTLPEDTDLVVTSPGWRP   90 (480)
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHHHcCCEEEECCCccccCCCCEEEECCCcCC
Confidence            4678999999999999999999999999999999665311     1123446554311  113456999999988654

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=95.94  E-value=0.03  Score=58.64  Aligned_cols=67  Identities=25%  Similarity=0.286  Sum_probs=49.0

Q ss_pred             cCcEEEEEcCChhHHHHHHHHHhCCC--EEEEEeCCchhhh-hhhc--CC------ceee-CHHHHhcCCcEEEEcCCC
Q psy4626          76 GGKQVVLCGYGEVGKGCCQSLKGLGC--VIYITEIDPICAL-QACM--DG------FSVV-KLNEVIRTVDIVVTATGN  142 (542)
Q Consensus        76 ~GktVvViG~G~IG~~vA~~l~~~Ga--~Viv~d~dp~r~~-~A~~--~G------~~v~-~l~e~l~~aDvVi~atG~  142 (542)
                      .+++|+|+|+|.||..+|..+...|.  ++.++|++..++. .+..  +.      ..+. +..+.+++||+||.+.|.
T Consensus         5 ~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~~~~~~~~adivIitag~   83 (315)
T PRK00066          5 QHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYAGDYSDCKDADLVVITAGA   83 (315)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEeCCHHHhCCCCEEEEecCC
Confidence            57899999999999999999998887  8999999876542 1111  11      1111 123568999999998774

>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase

Probab=95.93  E-value=0.03  Score=62.71  Aligned_cols=68  Identities=22%  Similarity=0.189  Sum_probs=49.5

Q ss_pred             ccccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhh-hcCCceeeCHHHH---h-cCCcEEEEcC
Q psy4626          73 VMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQA-CMDGFSVVKLNEV---I-RTVDIVVTAT  140 (542)
Q Consensus        73 ~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A-~~~G~~v~~l~e~---l-~~aDvVi~at  140 (542)
                      ..+.+++++|+|.|.+|+.++..|...|++|+++++++.++... ...+....+.++.   . ..+|+||.||
T Consensus       375 ~~~~~k~vlIlGaGGagrAia~~L~~~G~~V~i~nR~~e~a~~la~~l~~~~~~~~~~~~~~~~~~diiINtT  447 (529)
T PLN02520        375 SPLAGKLFVVIGAGGAGKALAYGAKEKGARVVIANRTYERAKELADAVGGQALTLADLENFHPEEGMILANTT  447 (529)
T ss_pred             cCCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhCCceeeHhHhhhhccccCeEEEecc
Confidence            35679999999999999999999999999999999987765432 2223233333321   2 3578888776

>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]

Probab=95.91  E-value=0.017  Score=60.35  Aligned_cols=88  Identities=20%  Similarity=0.282  Sum_probs=57.6

Q ss_pred             CcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhh-----------cCCcee----------eC-HH--HHhcC
Q psy4626          77 GKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQAC-----------MDGFSV----------VK-LN--EVIRT  132 (542)
Q Consensus        77 GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~-----------~~G~~v----------~~-l~--e~l~~  132 (542)
                      -++|+|+|+|.+|.++|..+...|..|.++|+++..+..+.           ..|.-.          ++ ..  ..+++
T Consensus         3 i~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~~~l~~   82 (307)
T COG1250           3 IKKVAVIGAGVMGAGIAAVFALAGYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDLAALKD   82 (307)
T ss_pred             ccEEEEEcccchhHHHHHHHhhcCCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCchhHhcc
Confidence            46899999999999999999887799999999965432221           111100          00 01  15689


Q ss_pred             CcEEEEcCC-Cc----ccCCHHHHhccCCCeEEE-eccC
Q psy4626         133 VDIVVTATG-NK----NVVTREHMDKMKNGCVVC-NMGH  165 (542)
Q Consensus       133 aDvVi~atG-~~----~lI~~e~l~~mk~Gailv-nvG~  165 (542)
                      ||+||++.- +.    .++ ++.=...++.+++. |+++
T Consensus        83 ~DlVIEAv~E~levK~~vf-~~l~~~~~~~aIlASNTSs  120 (307)
T COG1250          83 ADLVIEAVVEDLELKKQVF-AELEALAKPDAILASNTSS  120 (307)
T ss_pred             CCEEEEeccccHHHHHHHH-HHHHhhcCCCcEEeeccCC
Confidence            999999752 21    222 22333458899988 6664

>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function

Probab=95.90  E-value=0.016  Score=54.19  Aligned_cols=86  Identities=19%  Similarity=0.255  Sum_probs=58.7

Q ss_pred             cccCcEEEEEcCC-hhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCCcEEEEcCCCcccCC---HH
Q psy4626          74 MFGGKQVVLCGYG-EVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNKNVVT---RE  149 (542)
Q Consensus        74 ~l~GktVvViG~G-~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~aDvVi~atG~~~lI~---~e  149 (542)
                      ...|++|++|||= |    ++..++..+.+|.++|++|....+. ..++.....++++..||+++.+.-+  ++|   .+
T Consensus         8 ~~~~~~V~~VG~f~P----~~~~l~~~~~~v~v~d~~~~~~~~~-~~~~~~~~~~~~l~~aD~viiTGsT--lvN~Ti~~   80 (147)
T PF04016_consen    8 IGPGDKVGMVGYFQP----LVEKLKERGAEVRVFDLNPDNIGEE-PGDVPDEDAEEILPWADVVIITGST--LVNGTIDD   80 (147)
T ss_dssp             TTTTSEEEEES--HC----CHHHHCCCCSEEEEEESSGGG--SS-CT-EEGGGHHHHGGG-SEEEEECHH--CCTTTHHH
T ss_pred             hcCCCEEEEEcCcHH----HHHHHhcCCCCEEEEECCCCCCCCC-CCcCCHHHHHHHHccCCEEEEEeee--eecCCHHH
Confidence            3579999999964 5    6778888899999999999653321 2233334456788999999875322  343   35


Q ss_pred             HHhccCCCeEEEeccCC
Q psy4626         150 HMDKMKNGCVVCNMGHS  166 (542)
Q Consensus       150 ~l~~mk~GailvnvG~g  166 (542)
                      .++..+++..++-.|-.
T Consensus        81 iL~~~~~~~~vil~GpS   97 (147)
T PF04016_consen   81 ILELARNAREVILYGPS   97 (147)
T ss_dssp             HHHHTTTSSEEEEESCC
T ss_pred             HHHhCccCCeEEEEecC
Confidence            78888889999988864

; PDB: 3L5O_B 3NPG_A.

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=95.89  E-value=0.024  Score=64.93  Aligned_cols=35  Identities=26%  Similarity=0.526  Sum_probs=33.1

Q ss_pred             cCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCc
Q psy4626          76 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDP  110 (542)
Q Consensus        76 ~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp  110 (542)
                      .|++|+|||.|+.|+.+|..|+..|.+|+++|..+
T Consensus       309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~  343 (639)
T PRK12809        309 RSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHP  343 (639)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCC
Confidence            59999999999999999999999999999999776

>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases

Probab=95.86  E-value=0.025  Score=56.59  Aligned_cols=91  Identities=21%  Similarity=0.256  Sum_probs=67.4

Q ss_pred             cccCcEEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCc-eeeC-----HHHHh--cCCcEEEEcCCCcc
Q psy4626          74 MFGGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGF-SVVK-----LNEVI--RTVDIVVTATGNKN  144 (542)
Q Consensus        74 ~l~GktVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~-~v~~-----l~e~l--~~aDvVi~atG~~~  144 (542)
                      ...|++++|.|. |.+|..+++.++..|++|+++..++ +...+...|. .+.+     ..+..  ...|++++++|.. 
T Consensus       142 ~~~~~~vlv~g~~g~~g~~~~~~a~~~g~~v~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~d~v~~~~~~~-  219 (309)
T cd05289         142 LKAGQTVLIHGAAGGVGSFAVQLAKARGARVIATASAA-NADFLRSLGADEVIDYTKGDFERAAAPGGVDAVLDTVGGE-  219 (309)
T ss_pred             CCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEecch-hHHHHHHcCCCEEEeCCCCchhhccCCCCceEEEECCchH-
Confidence            457999999996 9999999999999999999987666 5544444453 1221     11111  4589999998876 


Q ss_pred             cCCHHHHhccCCCeEEEeccCCC
Q psy4626         145 VVTREHMDKMKNGCVVCNMGHSN  167 (542)
Q Consensus       145 lI~~e~l~~mk~GailvnvG~g~  167 (542)
                      .+ ...++.+++++.++.+|..+
T Consensus       220 ~~-~~~~~~l~~~g~~v~~g~~~  241 (309)
T cd05289         220 TL-ARSLALVKPGGRLVSIAGPP  241 (309)
T ss_pred             HH-HHHHHHHhcCcEEEEEcCCC
Confidence            33 46889999999999988654

Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et

>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=95.85  E-value=0.078  Score=53.52  Aligned_cols=102  Identities=21%  Similarity=0.208  Sum_probs=66.7

Q ss_pred             HHHHHhhcCccccCcEEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce-eeCHH------HHh--cCC
Q psy4626          64 IDSLKRSTDVMFGGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVKLN------EVI--RTV  133 (542)
Q Consensus        64 ~~ai~r~~~~~l~GktVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~-v~~l~------e~l--~~a  133 (542)
                      ++++.+.. ....|.+|+|.|. |.+|..+++.++..|++|++++.+ .+...+...|.. +.+..      ...  ++.
T Consensus       132 ~~~~~~~~-~~~~g~~vli~g~~g~~g~~~~~la~~~g~~v~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  209 (319)
T cd08267         132 LQALRDAG-KVKPGQRVLINGASGGVGTFAVQIAKALGAHVTGVCST-RNAELVRSLGADEVIDYTTEDFVALTAGGEKY  209 (319)
T ss_pred             HHHHHHhc-CCCCCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCH-HHHHHHHHcCCCEeecCCCCCcchhccCCCCC
Confidence            44443332 2457999999997 999999999999999999998754 444444445542 22211      111  468


Q ss_pred             cEEEEcCCCcccCCHHHHhccCCCeEEEeccCCC
Q psy4626         134 DIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSN  167 (542)
Q Consensus       134 DvVi~atG~~~lI~~e~l~~mk~GailvnvG~g~  167 (542)
                      |++++|+|....-.......+++++.++..|..+
T Consensus       210 d~vi~~~~~~~~~~~~~~~~l~~~g~~i~~g~~~  243 (319)
T cd08267         210 DVIFDAVGNSPFSLYRASLALKPGGRYVSVGGGP  243 (319)
T ss_pred             cEEEECCCchHHHHHHhhhccCCCCEEEEecccc
Confidence            9999998742111112233489999999988653

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=95.81  E-value=0.047  Score=57.36  Aligned_cols=67  Identities=19%  Similarity=0.222  Sum_probs=48.8

Q ss_pred             ccCcEEEEEcCChhHHHHHHHHHhCCC-EEEEEeCCchhhh-hhh-------cCCc--ee---eCHHHHhcCCcEEEEcC
Q psy4626          75 FGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICAL-QAC-------MDGF--SV---VKLNEVIRTVDIVVTAT  140 (542)
Q Consensus        75 l~GktVvViG~G~IG~~vA~~l~~~Ga-~Viv~d~dp~r~~-~A~-------~~G~--~v---~~l~e~l~~aDvVi~at  140 (542)
                      +..++|+|+|+|.+|..+|..+...|. +|+++|+++.++. ++.       ..+.  .+   .+. +.+++||+||.+.
T Consensus         4 ~~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~-~~l~~aDiVI~ta   82 (321)
T PTZ00082          4 IKRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGTNNY-EDIAGSDVVIVTA   82 (321)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEECCCH-HHhCCCCEEEECC
Confidence            445799999999999999999988885 9999999997531 111       1111  11   123 5789999999987


Q ss_pred             CC
Q psy4626         141 GN  142 (542)
Q Consensus       141 G~  142 (542)
                      |.
T Consensus        83 g~   84 (321)
T PTZ00082         83 GL   84 (321)
T ss_pred             CC
Confidence            64

>PRK00048 dihydrodipicolinate reductase; Provisional

Probab=95.79  E-value=0.026  Score=57.32  Aligned_cols=82  Identities=12%  Similarity=0.177  Sum_probs=54.6

Q ss_pred             EEEEEcC-ChhHHHHHHHHHhC-CCEEEE-EeCCchhhhhhhcCCce-eeCHHHHhcCCcEEEEcCCCcccCCHHHHhcc
Q psy4626          79 QVVLCGY-GEVGKGCCQSLKGL-GCVIYI-TEIDPICALQACMDGFS-VVKLNEVIRTVDIVVTATGNKNVVTREHMDKM  154 (542)
Q Consensus        79 tVvViG~-G~IG~~vA~~l~~~-Ga~Viv-~d~dp~r~~~A~~~G~~-v~~l~e~l~~aDvVi~atG~~~lI~~e~l~~m  154 (542)
                      +|+|+|+ |.+|+.+++.+... ++++.. +|+++.+.......++. +.++++++..+|+||++|. +.....-....+
T Consensus         3 kV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~~~~~i~~~~dl~~ll~~~DvVid~t~-p~~~~~~~~~al   81 (257)
T PRK00048          3 KVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQGALGVAITDDLEAVLADADVLIDFTT-PEATLENLEFAL   81 (257)
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccccCCCCccccCCHHHhccCCCEEEECCC-HHHHHHHHHHHH
Confidence            7999998 99999999988764 677554 88877654322222332 3567777888999999873 333322334455


Q ss_pred             CCCeEEE
Q psy4626         155 KNGCVVC  161 (542)
Q Consensus       155 k~Gailv  161 (542)
                      +.|.-++
T Consensus        82 ~~G~~vv   88 (257)
T PRK00048         82 EHGKPLV   88 (257)
T ss_pred             HcCCCEE
Confidence            6666555

>cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR)

Probab=95.78  E-value=0.12  Score=51.98  Aligned_cols=91  Identities=22%  Similarity=0.289  Sum_probs=68.4

Q ss_pred             cccCcEEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce-eeC-----H----HHHh--cCCcEEEEcC
Q psy4626          74 MFGGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVK-----L----NEVI--RTVDIVVTAT  140 (542)
Q Consensus        74 ~l~GktVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~-v~~-----l----~e~l--~~aDvVi~at  140 (542)
                      ...|++++|.|. |.+|..+++.++..|++|++++.++.+...+...|.. +.+     .    .+..  ++.|+++++.
T Consensus       142 ~~~g~~vlI~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~  221 (325)
T cd08253         142 AKAGETVLVHGGSGAVGHAAVQLARWAGARVIATASSAEGAELVRQAGADAVFNYRAEDLADRILAATAGQGVDVIIEVL  221 (325)
T ss_pred             CCCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCEEEeCCCcCHHHHHHHHcCCCceEEEEECC
Confidence            347999999995 9999999999999999999999888776655555542 111     1    1122  4689999998


Q ss_pred             CCcccCCHHHHhccCCCeEEEeccCC
Q psy4626         141 GNKNVVTREHMDKMKNGCVVCNMGHS  166 (542)
Q Consensus       141 G~~~lI~~e~l~~mk~GailvnvG~g  166 (542)
                      |... + ...++.+++++.++++|..
T Consensus       222 ~~~~-~-~~~~~~l~~~g~~v~~~~~  245 (325)
T cd08253         222 ANVN-L-AKDLDVLAPGGRIVVYGSG  245 (325)
T ss_pred             chHH-H-HHHHHhhCCCCEEEEEeec
Confidence            7653 2 3567888999999998864

Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts

>cd08268 MDR2 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=95.76  E-value=0.071  Score=53.77  Aligned_cols=102  Identities=18%  Similarity=0.189  Sum_probs=71.9

Q ss_pred             HHHHHHhhcCccccCcEEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce-eeC-----HH----HHh-
Q psy4626          63 IIDSLKRSTDVMFGGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVK-----LN----EVI-  130 (542)
Q Consensus        63 ~~~ai~r~~~~~l~GktVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~-v~~-----l~----e~l-  130 (542)
                      .++++.+.. ....+++++|.|. |.+|+.+++.++..|++|++++.++.+...+...|.. +.+     ..    +.. 
T Consensus       132 a~~~~~~~~-~~~~~~~vli~g~~~~~g~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  210 (328)
T cd08268         132 AYGALVELA-GLRPGDSVLITAASSSVGLAAIQIANAAGATVIATTRTSEKRDALLALGAAHVIVTDEEDLVAEVLRITG  210 (328)
T ss_pred             HHHHHHHhc-CCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHcCCCEEEecCCccHHHHHHHHhC
Confidence            344443322 2357899999997 9999999999999999999998877665544444432 111     11    122 


Q ss_pred             -cCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCCC
Q psy4626         131 -RTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSN  167 (542)
Q Consensus       131 -~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g~  167 (542)
                       +..|+++++.|.. .. .+.++.+++++.++..|..+
T Consensus       211 ~~~~d~vi~~~~~~-~~-~~~~~~l~~~g~~v~~g~~~  246 (328)
T cd08268         211 GKGVDVVFDPVGGP-QF-AKLADALAPGGTLVVYGALS  246 (328)
T ss_pred             CCCceEEEECCchH-hH-HHHHHhhccCCEEEEEEeCC
Confidence             3699999998873 33 36788999999999888643

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=95.76  E-value=0.015  Score=56.87  Aligned_cols=37  Identities=27%  Similarity=0.399  Sum_probs=34.0

Q ss_pred             cccCcEEEEEcCChhHHHHHHHHHhCCC-EEEEEeCCc
Q psy4626          74 MFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDP  110 (542)
Q Consensus        74 ~l~GktVvViG~G~IG~~vA~~l~~~Ga-~Viv~d~dp  110 (542)
                      .+..++|+|+|+|.+|..+|+.|...|. +++++|.|.
T Consensus        18 kl~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~   55 (202)
T TIGR02356        18 RLLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDH   55 (202)
T ss_pred             HhcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCE
Confidence            4678999999999999999999999998 999999874

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial

Probab=95.73  E-value=0.018  Score=67.01  Aligned_cols=86  Identities=17%  Similarity=0.289  Sum_probs=59.2

Q ss_pred             cEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhh-----------cCC-------------ce-eeCHHHHhcC
Q psy4626          78 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQAC-----------MDG-------------FS-VVKLNEVIRT  132 (542)
Q Consensus        78 ktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~-----------~~G-------------~~-v~~l~e~l~~  132 (542)
                      ++|+|+|.|.+|.++|..+...|.+|+++|+++..+..+.           ..|             .. ..++ +.+++
T Consensus       336 ~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  414 (737)
T TIGR02441       336 KTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTLDY-SGFKN  414 (737)
T ss_pred             cEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCH-HHhcc
Confidence            5899999999999999999999999999999986543321           111             00 1122 35689


Q ss_pred             CcEEEEcCC-C----cccCCHHHHhccCCCeEEE-eccC
Q psy4626         133 VDIVVTATG-N----KNVVTREHMDKMKNGCVVC-NMGH  165 (542)
Q Consensus       133 aDvVi~atG-~----~~lI~~e~l~~mk~Gailv-nvG~  165 (542)
                      ||+||++.- +    ..++ ++.=+.+++++++. |++.
T Consensus       415 aDlViEAv~E~l~~K~~vf-~~l~~~~~~~~ilasNTSs  452 (737)
T TIGR02441       415 ADMVIEAVFEDLSLKHKVI-KEVEAVVPPHCIIASNTSA  452 (737)
T ss_pred             CCeehhhccccHHHHHHHH-HHHHhhCCCCcEEEEcCCC
Confidence            999999852 1    1222 23334578999988 5554

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

>PTZ00117 malate dehydrogenase; Provisional

Probab=95.73  E-value=0.019  Score=60.29  Aligned_cols=67  Identities=18%  Similarity=0.255  Sum_probs=48.4

Q ss_pred             ccCcEEEEEcCChhHHHHHHHHHhCC-CEEEEEeCCchhhh-hhh-------cCCc--ee---eCHHHHhcCCcEEEEcC
Q psy4626          75 FGGKQVVLCGYGEVGKGCCQSLKGLG-CVIYITEIDPICAL-QAC-------MDGF--SV---VKLNEVIRTVDIVVTAT  140 (542)
Q Consensus        75 l~GktVvViG~G~IG~~vA~~l~~~G-a~Viv~d~dp~r~~-~A~-------~~G~--~v---~~l~e~l~~aDvVi~at  140 (542)
                      ...++|+|+|+|.+|..++..+...| .++.++|+++.++. ++.       ..+.  .+   .+. +.+++||+||.+.
T Consensus         3 ~~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~-~~l~~ADiVVita   81 (319)
T PTZ00117          3 VKRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKGVPQGKALDLKHFSTLVGSNINILGTNNY-EDIKDSDVVVITA   81 (319)
T ss_pred             CCCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCccchhHHHHHhhhccccCCCeEEEeCCCH-HHhCCCCEEEECC
Confidence            35679999999999999999998888 69999999886532 111       0111  11   123 3779999999988


Q ss_pred             CC
Q psy4626         141 GN  142 (542)
Q Consensus       141 G~  142 (542)
                      |.
T Consensus        82 g~   83 (319)
T PTZ00117         82 GV   83 (319)
T ss_pred             CC
Confidence            64

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=95.73  E-value=0.028  Score=65.15  Aligned_cols=86  Identities=19%  Similarity=0.206  Sum_probs=58.2

Q ss_pred             cEEEEEcCChhHHHHHHHHH-hCCCEEEEEeCCchhhhhhh-----------cCCc-------------e-eeCHHHHhc
Q psy4626          78 KQVVLCGYGEVGKGCCQSLK-GLGCVIYITEIDPICALQAC-----------MDGF-------------S-VVKLNEVIR  131 (542)
Q Consensus        78 ktVvViG~G~IG~~vA~~l~-~~Ga~Viv~d~dp~r~~~A~-----------~~G~-------------~-v~~l~e~l~  131 (542)
                      ++|+|+|+|.+|.++|..+. ..|.+|+++|+++.....+.           ..|.             . ..++ +.++
T Consensus       310 ~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~  388 (708)
T PRK11154        310 NKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTTDY-RGFK  388 (708)
T ss_pred             cEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeCCh-HHhc
Confidence            68999999999999999988 78999999999986543321           1110             0 1122 4568


Q ss_pred             CCcEEEEcCCC-----cccCCHHHHhccCCCeEEEeccC
Q psy4626         132 TVDIVVTATGN-----KNVVTREHMDKMKNGCVVCNMGH  165 (542)
Q Consensus       132 ~aDvVi~atG~-----~~lI~~e~l~~mk~GailvnvG~  165 (542)
                      +||+||++.--     ..++ ++.=+.+++++++.+..+
T Consensus       389 ~aDlViEav~E~~~~K~~v~-~~le~~~~~~~ilasnTS  426 (708)
T PRK11154        389 HADVVIEAVFEDLALKQQMV-AEVEQNCAPHTIFASNTS  426 (708)
T ss_pred             cCCEEeecccccHHHHHHHH-HHHHhhCCCCcEEEECCC
Confidence            99999998531     1222 223345689999984433

>PRK08324 short chain dehydrogenase; Validated

Probab=95.71  E-value=0.022  Score=65.68  Aligned_cols=41  Identities=24%  Similarity=0.468  Sum_probs=36.7

Q ss_pred             cccCcEEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCchhhh
Q psy4626          74 MFGGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICAL  114 (542)
Q Consensus        74 ~l~GktVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~  114 (542)
                      .+.|++++|+|. |.||+.+++.+...|++|+++++++.+..
T Consensus       419 ~l~gk~vLVTGasggIG~~la~~L~~~Ga~Vvl~~r~~~~~~  460 (681)
T PRK08324        419 PLAGKVALVTGAAGGIGKATAKRLAAEGACVVLADLDEEAAE  460 (681)
T ss_pred             CCCCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEeCCHHHHH
Confidence            457899999995 99999999999999999999999887654

>PRK10637 cysG siroheme synthase; Provisional

Probab=95.68  E-value=0.03  Score=61.59  Aligned_cols=92  Identities=16%  Similarity=0.269  Sum_probs=64.0

Q ss_pred             ccccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCC--chhhhhhhcCCceeeC---HHHHhcCCcEEEEcCCCcccCC
Q psy4626          73 VMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEID--PICALQACMDGFSVVK---LNEVIRTVDIVVTATGNKNVVT  147 (542)
Q Consensus        73 ~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~d--p~r~~~A~~~G~~v~~---l~e~l~~aDvVi~atG~~~lI~  147 (542)
                      ..+.|++|+|+|.|.++..=++.|...|++|+|+-.+  +.-...+....+....   ..+-++++++||.||+++. +|
T Consensus         8 ~~l~~~~vlvvGgG~vA~rk~~~ll~~ga~v~visp~~~~~~~~l~~~~~i~~~~~~~~~~dl~~~~lv~~at~d~~-~n   86 (457)
T PRK10637          8 CQLRDRDCLLVGGGDVAERKARLLLDAGARLTVNALAFIPQFTAWADAGMLTLVEGPFDESLLDTCWLAIAATDDDA-VN   86 (457)
T ss_pred             EEcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHhCCCEEEEeCCCChHHhCCCEEEEECCCCHH-Hh
Confidence            3578999999999999988888888999999998432  2211111111222221   1345689999999998764 56


Q ss_pred             HHHHhccCCCeEEEeccC
Q psy4626         148 REHMDKMKNGCVVCNMGH  165 (542)
Q Consensus       148 ~e~l~~mk~GailvnvG~  165 (542)
                      .+.....+..++++|+.-
T Consensus        87 ~~i~~~a~~~~~lvN~~d  104 (457)
T PRK10637         87 QRVSEAAEARRIFCNVVD  104 (457)
T ss_pred             HHHHHHHHHcCcEEEECC
Confidence            566666777889999873

>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family

Probab=95.66  E-value=0.12  Score=52.49  Aligned_cols=91  Identities=24%  Similarity=0.306  Sum_probs=67.5

Q ss_pred             cccCcEEEEEcCC-hhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce-eeCH------H---HHh--cCCcEEEEcC
Q psy4626          74 MFGGKQVVLCGYG-EVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVKL------N---EVI--RTVDIVVTAT  140 (542)
Q Consensus        74 ~l~GktVvViG~G-~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~-v~~l------~---e~l--~~aDvVi~at  140 (542)
                      ...|++++|.|.+ .+|+.+++.++..|++|++++.++.+...+...+.. ..+.      +   +..  .+.|+++++.
T Consensus       164 ~~~~~~vlI~g~~~~iG~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~  243 (342)
T cd08266         164 LRPGETVLVHGAGSGVGSAAIQIAKLFGATVIATAGSEDKLERAKELGADYVIDYRKEDFVREVRELTGKRGVDVVVEHV  243 (342)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCeEEecCChHHHHHHHHHhCCCCCcEEEECC
Confidence            4578999999996 899999999999999999998887766555444432 1211      1   111  3689999998


Q ss_pred             CCcccCCHHHHhccCCCeEEEeccCC
Q psy4626         141 GNKNVVTREHMDKMKNGCVVCNMGHS  166 (542)
Q Consensus       141 G~~~lI~~e~l~~mk~GailvnvG~g  166 (542)
                      |.. .+ .+.++.+++++.++++|..
T Consensus       244 g~~-~~-~~~~~~l~~~G~~v~~~~~  267 (342)
T cd08266         244 GAA-TW-EKSLKSLARGGRLVTCGAT  267 (342)
T ss_pred             cHH-HH-HHHHHHhhcCCEEEEEecC
Confidence            764 33 3678899999999998854

This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=95.65  E-value=0.047  Score=62.69  Aligned_cols=35  Identities=26%  Similarity=0.345  Sum_probs=32.8

Q ss_pred             cCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCc
Q psy4626          76 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDP  110 (542)
Q Consensus        76 ~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp  110 (542)
                      .|++|+|||.|+.|..+|..|+..|.+|+++|.++
T Consensus       192 ~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~  226 (652)
T PRK12814        192 SGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANE  226 (652)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Confidence            58999999999999999999999999999999765

>PRK13529 malate dehydrogenase; Provisional

Probab=95.64  E-value=0.094  Score=58.74  Aligned_cols=122  Identities=18%  Similarity=0.290  Sum_probs=85.0

Q ss_pred             HhHHHHHHHHHHHHH---hhcCccccCcEEEEEcCChhHHHHHHHHHh----CCC-------EEEEEeCCc---------
Q psy4626          54 DNLYMCRESIIDSLK---RSTDVMFGGKQVVLCGYGEVGKGCCQSLKG----LGC-------VIYITEIDP---------  110 (542)
Q Consensus        54 d~~~g~~~s~~~ai~---r~~~~~l~GktVvViG~G~IG~~vA~~l~~----~Ga-------~Viv~d~dp---------  110 (542)
                      |...||+-.++.++.   +.++..+...+++++|+|.-|.++|..+..    .|+       +++.+|..-         
T Consensus       269 DDiQGTaaV~LAgll~A~r~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~Gl~~eeA~~~i~~vD~~GLl~~~r~~l  348 (563)
T PRK13529        269 DDIQGTGAVTLAGLLAALKITGEPLSDQRIVFLGAGSAGCGIADQIVAAMVREGLSEEEARKRFFMVDRQGLLTDDMPDL  348 (563)
T ss_pred             cccchHHHHHHHHHHHHHHHhCCChhhcEEEEECCCHHHHHHHHHHHHHHHHcCCChhHhcCeEEEEcCCCeEeCCCCcc
Confidence            555577755544433   445677889999999999999999998876    688       788887642         


Q ss_pred             --hhhhhhhcCCc--------eeeCHHHHhcCC--cEEEEcCCCcccCCHHHHhccCC---CeEEEeccCCCc--ccChH
Q psy4626         111 --ICALQACMDGF--------SVVKLNEVIRTV--DIVVTATGNKNVVTREHMDKMKN---GCVVCNMGHSNT--EIDVN  173 (542)
Q Consensus       111 --~r~~~A~~~G~--------~v~~l~e~l~~a--DvVi~atG~~~lI~~e~l~~mk~---GailvnvG~g~~--eid~~  173 (542)
                        .+...|.....        ...++.++++.+  |++|-+++..++++++.++.|.+   .-+|.-.+....  |+..+
T Consensus       349 ~~~k~~fa~~~~~~~~~~~~~~~~~L~e~v~~~kPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~aE~tpe  428 (563)
T PRK13529        349 LDFQKPYARKREELADWDTEGDVISLLEVVRNVKPTVLIGVSGQPGAFTEEIVKEMAAHCERPIIFPLSNPTSRAEATPE  428 (563)
T ss_pred             hHHHHHHhhhcccccccccccCCCCHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEEECCCcCCCcccCHH
Confidence              22222332110        114678888765  99999998889999999999976   666666665543  66655


Q ss_pred             hh
Q psy4626         174 SL  175 (542)
Q Consensus       174 aL  175 (542)
                      ..
T Consensus       429 ~a  430 (563)
T PRK13529        429 DL  430 (563)
T ss_pred             HH
Confidence            44

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=95.62  E-value=0.018  Score=60.89  Aligned_cols=37  Identities=24%  Similarity=0.384  Sum_probs=34.1

Q ss_pred             cccCcEEEEEcCChhHHHHHHHHHhCCC-EEEEEeCCc
Q psy4626          74 MFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDP  110 (542)
Q Consensus        74 ~l~GktVvViG~G~IG~~vA~~l~~~Ga-~Viv~d~dp  110 (542)
                      .+.+++|+|+|+|.+|..+|..|...|. +++++|.|.
T Consensus        21 ~L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~   58 (338)
T PRK12475         21 KIREKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY   58 (338)
T ss_pred             hhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence            4678999999999999999999999998 899999875

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=95.62  E-value=0.063  Score=57.59  Aligned_cols=87  Identities=20%  Similarity=0.244  Sum_probs=62.6

Q ss_pred             cEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCc---------------------e-eeCHHHHhcCCcE
Q psy4626          78 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGF---------------------S-VVKLNEVIRTVDI  135 (542)
Q Consensus        78 ktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~---------------------~-v~~l~e~l~~aDv  135 (542)
                      .++.|+|.|.+|+..+..+..+|-+|+.+|+|+.+-..- ..|.                     . +.+.+++++.+|+
T Consensus         1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~KV~~l-n~g~~PI~EpgLe~ll~~~~~~gRl~fTtd~~~a~~~adv   79 (414)
T COG1004           1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDESKVELL-NKGISPIYEPGLEELLKENLASGRLRFTTDYEEAVKDADV   79 (414)
T ss_pred             CceEEECCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHH-hCCCCCCcCccHHHHHHhccccCcEEEEcCHHHHHhcCCE
Confidence            368999999999999999999999999999999774321 1121                     1 2234567789999


Q ss_pred             EEEcCCCcccCC------------HHHHhccCCCeEEEeccC
Q psy4626         136 VVTATGNKNVVT------------REHMDKMKNGCVVCNMGH  165 (542)
Q Consensus       136 Vi~atG~~~lI~------------~e~l~~mk~GailvnvG~  165 (542)
                      +|.|+||+.--+            ++..+.++..+++++=+.
T Consensus        80 ~fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV~KST  121 (414)
T COG1004          80 VFIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVVIKST  121 (414)
T ss_pred             EEEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEEEcCC
Confidence            999998764422            233445556577776544

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=95.62  E-value=0.059  Score=59.63  Aligned_cols=89  Identities=15%  Similarity=0.105  Sum_probs=61.0

Q ss_pred             cEEEEEcCChhHHHHHHHHHhC--CCEEEEEeCCchhhhhhhcCC-------------------ce-eeCHHHHhcCCcE
Q psy4626          78 KQVVLCGYGEVGKGCCQSLKGL--GCVIYITEIDPICALQACMDG-------------------FS-VVKLNEVIRTVDI  135 (542)
Q Consensus        78 ktVvViG~G~IG~~vA~~l~~~--Ga~Viv~d~dp~r~~~A~~~G-------------------~~-v~~l~e~l~~aDv  135 (542)
                      .+|+|+|.|.+|...|..+...  |.+|+.+|+++.+...-...+                   .. ..+..++++.+|+
T Consensus         2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t~~~~~~i~~adv   81 (473)
T PLN02353          2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFSTDVEKHVAEADI   81 (473)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEEcCHHHHHhcCCE
Confidence            4799999999999999999876  578999999998754321111                   11 1224556789999


Q ss_pred             EEEcCCCccc---------CC--------HHHHhccCCCeEEEeccCC
Q psy4626         136 VVTATGNKNV---------VT--------REHMDKMKNGCVVCNMGHS  166 (542)
Q Consensus       136 Vi~atG~~~l---------I~--------~e~l~~mk~GailvnvG~g  166 (542)
                      +|.|.+|+.-         .+        ++.-+.+++|.+++.-+..
T Consensus        82 i~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STv  129 (473)
T PLN02353         82 VFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTV  129 (473)
T ss_pred             EEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCC
Confidence            9999887631         11        1233456888888855543

>KOG1197|consensus

Probab=95.58  E-value=0.18  Score=51.38  Aligned_cols=93  Identities=22%  Similarity=0.267  Sum_probs=73.4

Q ss_pred             cccCcEEEEEc-CChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce-eeC--HH----HHh-----cCCcEEEEcC
Q psy4626          74 MFGGKQVVLCG-YGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVK--LN----EVI-----RTVDIVVTAT  140 (542)
Q Consensus        74 ~l~GktVvViG-~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~-v~~--l~----e~l-----~~aDvVi~at  140 (542)
                      ..+|.+|+|.- +|-+|+.+.|.|+..|+.++.+-....+...|.+.|++ .++  -+    ++.     ++.|++.+..
T Consensus       144 vkpGhtVlvhaAAGGVGlll~Ql~ra~~a~tI~~asTaeK~~~akenG~~h~I~y~~eD~v~~V~kiTngKGVd~vyDsv  223 (336)
T KOG1197|consen  144 VKPGHTVLVHAAAGGVGLLLCQLLRAVGAHTIATASTAEKHEIAKENGAEHPIDYSTEDYVDEVKKITNGKGVDAVYDSV  223 (336)
T ss_pred             CCCCCEEEEEeccccHHHHHHHHHHhcCcEEEEEeccHHHHHHHHhcCCcceeeccchhHHHHHHhccCCCCceeeeccc
Confidence            46888888765 59999999999999999999988777888889999987 222  22    222     6899999988


Q ss_pred             CCcccCCHHHHhccCCCeEEEeccCCCc
Q psy4626         141 GNKNVVTREHMDKMKNGCVVCNMGHSNT  168 (542)
Q Consensus       141 G~~~lI~~e~l~~mk~GailvnvG~g~~  168 (542)
                      |.. .+ +..++.+|+++.+++.|-.+.
T Consensus       224 G~d-t~-~~sl~~Lk~~G~mVSfG~asg  249 (336)
T KOG1197|consen  224 GKD-TF-AKSLAALKPMGKMVSFGNASG  249 (336)
T ss_pred             cch-hh-HHHHHHhccCceEEEeccccC
Confidence            753 33 367899999999999887653

>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]

Probab=95.58  E-value=0.02  Score=51.66  Aligned_cols=81  Identities=21%  Similarity=0.377  Sum_probs=49.2

Q ss_pred             EEEEEcC-ChhHHHHHHHHHh-CCCEE-EEEeCCchhhh--------hhhcCCcee-eCHHHHhcCCcEEEEcCCCcccC
Q psy4626          79 QVVLCGY-GEVGKGCCQSLKG-LGCVI-YITEIDPICAL--------QACMDGFSV-VKLNEVIRTVDIVVTATGNKNVV  146 (542)
Q Consensus        79 tVvViG~-G~IG~~vA~~l~~-~Ga~V-iv~d~dp~r~~--------~A~~~G~~v-~~l~e~l~~aDvVi~atG~~~lI  146 (542)
                      +|+|+|+ |++|+.+++.+.. -|+++ -++++.+....        .....|+.+ .++++++..+|++|+.| ++..+
T Consensus         2 rV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~~~l~~~~~~~DVvIDfT-~p~~~   80 (124)
T PF01113_consen    2 RVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPVTDDLEELLEEADVVIDFT-NPDAV   80 (124)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBEBS-HHHHTTH-SEEEEES--HHHH
T ss_pred             EEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcCCcccccchhHHHhcccCCEEEEcC-ChHHh
Confidence            6999999 9999999999988 67774 44676651100        011233333 35778888899999988 44444


Q ss_pred             CHHHHhc-cCCCeEEE
Q psy4626         147 TREHMDK-MKNGCVVC  161 (542)
Q Consensus       147 ~~e~l~~-mk~Gailv  161 (542)
                      . +.++. ++.|.-++
T Consensus        81 ~-~~~~~~~~~g~~~V   95 (124)
T PF01113_consen   81 Y-DNLEYALKHGVPLV   95 (124)
T ss_dssp             H-HHHHHHHHHT-EEE
T ss_pred             H-HHHHHHHhCCCCEE
Confidence            3 34443 34455444

In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....

>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.57  E-value=0.038  Score=60.95  Aligned_cols=70  Identities=20%  Similarity=0.377  Sum_probs=52.9

Q ss_pred             cccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhh-hhcCCceeeC---HHHHhcCCcEEEEcCCCc
Q psy4626          74 MFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQ-ACMDGFSVVK---LNEVIRTVDIVVTATGNK  143 (542)
Q Consensus        74 ~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~-A~~~G~~v~~---l~e~l~~aDvVi~atG~~  143 (542)
                      .+.+++|+|+|+|..|+++|+.|+..|++|+++|.++..... ....|+.+..   ..+.+.++|+||-.+|-+
T Consensus        12 ~~~~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~d~vV~Spgi~   85 (473)
T PRK00141         12 QELSGRVLVAGAGVSGRGIAAMLSELGCDVVVADDNETARHKLIEVTGVADISTAEASDQLDSFSLVVTSPGWR   85 (473)
T ss_pred             cccCCeEEEEccCHHHHHHHHHHHHCCCEEEEECCChHHHHHHHHhcCcEEEeCCCchhHhcCCCEEEeCCCCC
Confidence            567899999999999999999999999999999976554322 2334665432   234467889999887754

>cd08272 MDR6 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=95.57  E-value=0.13  Score=51.77  Aligned_cols=90  Identities=22%  Similarity=0.258  Sum_probs=67.3

Q ss_pred             cccCcEEEEEc-CChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce-eeC----HHH----Hh--cCCcEEEEcCC
Q psy4626          74 MFGGKQVVLCG-YGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVK----LNE----VI--RTVDIVVTATG  141 (542)
Q Consensus        74 ~l~GktVvViG-~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~-v~~----l~e----~l--~~aDvVi~atG  141 (542)
                      ...|.+++|.| .|.+|..+++.++.+|++|+++..+ .+...+...|.. +.+    ..+    ..  ++.|++++++|
T Consensus       142 ~~~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~v~~~~~  220 (326)
T cd08272         142 VQAGQTVLIHGGAGGVGHVAVQLAKAAGARVYATASS-EKAAFARSLGADPIIYYRETVVEYVAEHTGGRGFDVVFDTVG  220 (326)
T ss_pred             CCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEech-HHHHHHHHcCCCEEEecchhHHHHHHHhcCCCCCcEEEECCC
Confidence            45799999999 6999999999999999999998866 655555445543 111    111    12  36899999988


Q ss_pred             CcccCCHHHHhccCCCeEEEeccCC
Q psy4626         142 NKNVVTREHMDKMKNGCVVCNMGHS  166 (542)
Q Consensus       142 ~~~lI~~e~l~~mk~GailvnvG~g  166 (542)
                      ... + .+.++.+++++.++..|..
T Consensus       221 ~~~-~-~~~~~~l~~~g~~v~~~~~  243 (326)
T cd08272         221 GET-L-DASFEAVALYGRVVSILGG  243 (326)
T ss_pred             hHH-H-HHHHHHhccCCEEEEEecC
Confidence            743 4 3678999999999988754

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>TIGR00670 asp_carb_tr aspartate carbamoyltransferase

Probab=95.57  E-value=0.22  Score=51.98  Aligned_cols=120  Identities=19%  Similarity=0.277  Sum_probs=77.4

Q ss_pred             cccccceeecCch----hhhHHHHhHHHHHHHHHHHHHhhcCccccCcEEEEEcCC---hhHHHHHHHHHhCCCEEEEEe
Q psy4626          35 GKLTVPAMNVNDS----VTKTKFDNLYMCRESIIDSLKRSTDVMFGGKQVVLCGYG---EVGKGCCQSLKGLGCVIYITE  107 (542)
Q Consensus        35 ~~L~~PV~~vn~s----~~K~~fd~~~g~~~s~~~ai~r~~~~~l~GktVvViG~G---~IG~~vA~~l~~~Ga~Viv~d  107 (542)
                      ....+||||.-+.    ++-.+.|-.         .+.+..+ .+.|.+|+++|-|   ++....+..+..+|++|.++-
T Consensus       114 ~~s~vPVINa~~g~~~HPtQ~LaDl~---------Ti~e~~g-~l~g~~va~vGD~~~~~v~~Sl~~~~a~~g~~v~~~~  183 (301)
T TIGR00670       114 EVSEVPVINAGDGSNQHPTQTLLDLY---------TIYEEFG-RLDGLKIALVGDLKYGRTVHSLAEALTRFGVEVYLIS  183 (301)
T ss_pred             hhCCCCEEeCCCCCCCCcHHHHHHHH---------HHHHHhC-CCCCCEEEEEccCCCCcHHHHHHHHHHHcCCEEEEEC
Confidence            3457799988542    233333321         2222222 4789999999995   889999999999999999986


Q ss_pred             CCchh-----hhhhhcCCce---eeCHHHHhcCCcEEEEcCCC---------------cccCCHHHHhccCCCeEEEecc
Q psy4626         108 IDPIC-----ALQACMDGFS---VVKLNEVIRTVDIVVTATGN---------------KNVVTREHMDKMKNGCVVCNMG  164 (542)
Q Consensus       108 ~dp~r-----~~~A~~~G~~---v~~l~e~l~~aDvVi~atG~---------------~~lI~~e~l~~mk~GailvnvG  164 (542)
                      +....     ...+...|..   ..+++++++++|||....-.               +--++.+.++.+++++++.-+.
T Consensus       184 P~~~~~~~~~~~~~~~~G~~v~~~~d~~~a~~~aDvvyt~~~~~er~~~~~~~~~~~~~y~v~~ell~~a~~~ai~mHcl  263 (301)
T TIGR00670       184 PEELRMPKEILEELKAKGIKVRETESLEEVIDEADVLYVTRIQKERFPDPEEYEKYKGSYGITLERLEAAKKGVIIMHPL  263 (301)
T ss_pred             CccccCCHHHHHHHHHcCCEEEEECCHHHHhCCCCEEEECCccccccCCHHHHHHHhcCCeECHHHHhhcCCCCEEECCC
Confidence            43331     1223334544   34678999999999985311               2234456677777777766555

Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.

>COG5322 Predicted dehydrogenase [General function prediction only]

Probab=95.57  E-value=0.065  Score=54.70  Aligned_cols=93  Identities=16%  Similarity=0.178  Sum_probs=64.6

Q ss_pred             cCccccCcEEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCchhhhh-h-----hcCCce-eeCHHHHh-cCCcEEEEcCC
Q psy4626          71 TDVMFGGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQ-A-----CMDGFS-VVKLNEVI-RTVDIVVTATG  141 (542)
Q Consensus        71 ~~~~l~GktVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~-A-----~~~G~~-v~~l~e~l-~~aDvVi~atG  141 (542)
                      ++..++..+|+|+|+ |.||..+|+.+.+.+.+....-++..++.+ +     ...|.. +++++..+ ...++|+.++-
T Consensus       161 lGidlsqatvaivGa~G~Ia~~Iar~la~~~~~~~ll~r~aea~~rq~l~~l~e~~~~~~i~s~d~~~~~e~i~v~vAs~  240 (351)
T COG5322         161 LGIDLSQATVAIVGATGDIASAIARWLAPKVGVKELLLRDAEARNRQRLTLLQEELGRGKIMSLDYALPQEDILVWVASM  240 (351)
T ss_pred             hCcCHHHCeEEEecCCchHHHHHHHHhccccCEEEEecccHHhhhhhhhhhcccccCCCeeeeccccccccceEEEEeec
Confidence            467889999999999 999999999999999988887766654321 1     123333 44555544 44455555543


Q ss_pred             C-cccCCHHHHhccCCCeEEEeccCC
Q psy4626         142 N-KNVVTREHMDKMKNGCVVCNMGHS  166 (542)
Q Consensus       142 ~-~~lI~~e~l~~mk~GailvnvG~g  166 (542)
                      . -..|..++   +|+|+.++.-|+.
T Consensus       241 ~~g~~I~pq~---lkpg~~ivD~g~P  263 (351)
T COG5322         241 PKGVEIFPQH---LKPGCLIVDGGYP  263 (351)
T ss_pred             CCCceechhh---ccCCeEEEcCCcC
Confidence            3 34565544   7999999998864

>KOG2380|consensus

Probab=95.55  E-value=0.021  Score=59.91  Aligned_cols=89  Identities=15%  Similarity=0.253  Sum_probs=64.7

Q ss_pred             cCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce-eeCHHHHh-cCCcEEEEcCCCcc---cCCHHH
Q psy4626          76 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVKLNEVI-RTVDIVVTATGNKN---VVTREH  150 (542)
Q Consensus        76 ~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~-v~~l~e~l-~~aDvVi~atG~~~---lI~~e~  150 (542)
                      +-.+++|+|+|..|+..|..+-..|-.|++++++.+... +...|.. ...+.+++ +.+|+|+-|+..-+   ++..--
T Consensus        51 ~tl~IaIIGfGnmGqflAetli~aGh~li~hsRsdyssa-a~~yg~~~ft~lhdlcerhpDvvLlctsilsiekilatyp  129 (480)
T KOG2380|consen   51 ATLVIAIIGFGNMGQFLAETLIDAGHGLICHSRSDYSSA-AEKYGSAKFTLLHDLCERHPDVVLLCTSILSIEKILATYP  129 (480)
T ss_pred             cceEEEEEecCcHHHHHHHHHHhcCceeEecCcchhHHH-HHHhcccccccHHHHHhcCCCEEEEEehhhhHHHHHHhcC
Confidence            456899999999999999999999999999998775443 3444543 44555665 78999999885322   222223


Q ss_pred             HhccCCCeEEEeccC
Q psy4626         151 MDKMKNGCVVCNMGH  165 (542)
Q Consensus       151 l~~mk~GailvnvG~  165 (542)
                      ++.+|.|.+++.+-+
T Consensus       130 fqrlrrgtlfvdvlS  144 (480)
T KOG2380|consen  130 FQRLRRGTLFVDVLS  144 (480)
T ss_pred             chhhccceeEeeeee
Confidence            566888888876554

>TIGR02824 quinone_pig3 putative NAD(P)H quinone oxidoreductase, PIG3 family

Probab=95.52  E-value=0.059  Score=54.26  Aligned_cols=91  Identities=15%  Similarity=0.273  Sum_probs=68.1

Q ss_pred             cccCcEEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce-eeC-----HHH----Hh--cCCcEEEEcC
Q psy4626          74 MFGGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVK-----LNE----VI--RTVDIVVTAT  140 (542)
Q Consensus        74 ~l~GktVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~-v~~-----l~e----~l--~~aDvVi~at  140 (542)
                      ...|++++|.|. |.+|..+++.++..|++|+++..++.+...+...|.. +.+     ..+    ..  ++.|+++++.
T Consensus       137 ~~~~~~vlv~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~  216 (325)
T TIGR02824       137 LKAGETVLIHGGASGIGTTAIQLAKAFGARVFTTAGSDEKCAACEALGADIAINYREEDFVEVVKAETGGKGVDVILDIV  216 (325)
T ss_pred             CCCCCEEEEEcCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCcEEEecCchhHHHHHHHHcCCCCeEEEEECC
Confidence            457899999996 8999999999999999999998887766555445542 111     111    11  3599999998


Q ss_pred             CCcccCCHHHHhccCCCeEEEeccCC
Q psy4626         141 GNKNVVTREHMDKMKNGCVVCNMGHS  166 (542)
Q Consensus       141 G~~~lI~~e~l~~mk~GailvnvG~g  166 (542)
                      |.. .+ ...++.+++++.++.+|..
T Consensus       217 ~~~-~~-~~~~~~l~~~g~~v~~g~~  240 (325)
T TIGR02824       217 GGS-YL-NRNIKALALDGRIVQIGFQ  240 (325)
T ss_pred             chH-HH-HHHHHhhccCcEEEEEecC
Confidence            864 33 3678889999999998864

Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized.

>PRK12550 shikimate 5-dehydrogenase; Reviewed

Probab=95.50  E-value=0.053  Score=55.76  Aligned_cols=76  Identities=22%  Similarity=0.183  Sum_probs=52.6

Q ss_pred             HHHHHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCCC-EEEEEeCCchhhhh-hhcCCceeeCHHHH-hcCCcEEE
Q psy4626          61 ESIIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQ-ACMDGFSVVKLNEV-IRTVDIVV  137 (542)
Q Consensus        61 ~s~~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga-~Viv~d~dp~r~~~-A~~~G~~v~~l~e~-l~~aDvVi  137 (542)
                      .+++.++++. +. ..+++++|+|+|-.++.++..|+..|+ +|+++++++.+... +...+....  ++. ...+|+||
T Consensus       108 ~Gf~~~L~~~-~~-~~~~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~~a~~la~~~~~~~~--~~~~~~~~dlvI  183 (272)
T PRK12550        108 IAIAKLLASY-QV-PPDLVVALRGSGGMAKAVAAALRDAGFTDGTIVARNEKTGKALAELYGYEWR--PDLGGIEADILV  183 (272)
T ss_pred             HHHHHHHHhc-CC-CCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhCCcch--hhcccccCCEEE
Confidence            3445555443 22 246799999999999999999999998 79999999977643 222232211  111 24689999


Q ss_pred             EcC
Q psy4626         138 TAT  140 (542)
Q Consensus       138 ~at  140 (542)
                      .||
T Consensus       184 NaT  186 (272)
T PRK12550        184 NVT  186 (272)
T ss_pred             ECC
Confidence            987

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.47  E-value=0.061  Score=58.44  Aligned_cols=68  Identities=21%  Similarity=0.411  Sum_probs=48.6

Q ss_pred             ccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhh----hhhhcCCceee---CHHHHhcC-CcEEEEcCCC
Q psy4626          75 FGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICA----LQACMDGFSVV---KLNEVIRT-VDIVVTATGN  142 (542)
Q Consensus        75 l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~----~~A~~~G~~v~---~l~e~l~~-aDvVi~atG~  142 (542)
                      +.|++++|+|.|.+|+.+|+.|+..|++|+++|.++...    ......|..+.   ...+.+.. +|+||..+|-
T Consensus         3 ~~~k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~d~vV~s~gi   78 (447)
T PRK02472          3 YQNKKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKPFSENPEAQELLEEGIKVICGSHPLELLDEDFDLMVKNPGI   78 (447)
T ss_pred             cCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCCccchhHHHHHHhcCCEEEeCCCCHHHhcCcCCEEEECCCC
Confidence            468999999999999999999999999999999765321    11123355432   12233443 8999887763

>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent

Probab=95.46  E-value=0.093  Score=54.73  Aligned_cols=65  Identities=23%  Similarity=0.256  Sum_probs=46.1

Q ss_pred             cEEEEEcCChhHHHHHHHHHhCCC-EEEEEeCCchhhh-hhhc-------CCc--ee---eCHHHHhcCCcEEEEcCCCc
Q psy4626          78 KQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICAL-QACM-------DGF--SV---VKLNEVIRTVDIVVTATGNK  143 (542)
Q Consensus        78 ktVvViG~G~IG~~vA~~l~~~Ga-~Viv~d~dp~r~~-~A~~-------~G~--~v---~~l~e~l~~aDvVi~atG~~  143 (542)
                      ++|.|+|.|.+|..+|..+...|. +|+++|+++.... ++..       ...  .+   .+.++ ++++|+||.|.|++
T Consensus         2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~t~d~~~-~~~aDiVIitag~p   80 (305)
T TIGR01763         2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTGTNNYAD-TANSDIVVITAGLP   80 (305)
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCChhHHHHHhhhhhhhccCCCcEEEecCCHHH-hCCCCEEEEcCCCC
Confidence            479999999999999999988775 8999998765332 1110       011  11   23444 78999999998853

The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.

>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]

Probab=95.40  E-value=0.046  Score=59.93  Aligned_cols=68  Identities=25%  Similarity=0.394  Sum_probs=51.1

Q ss_pred             cCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhh----hhhhcCCceeeC---HHHHhcCCcEEEEcCCCc
Q psy4626          76 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICA----LQACMDGFSVVK---LNEVIRTVDIVVTATGNK  143 (542)
Q Consensus        76 ~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~----~~A~~~G~~v~~---l~e~l~~aDvVi~atG~~  143 (542)
                      .+++|+|+|+|.-|+.+++.|+..|++|+++|.+|.-.    ......+..+..   ..+.+..+|+||..+|-+
T Consensus         6 ~~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~d~vV~SPGi~   80 (448)
T COG0771           6 QGKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAPEGLAAQPLLLEGIEVELGSHDDEDLAEFDLVVKSPGIP   80 (448)
T ss_pred             cCCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCccchhhhhhhccCceeecCccchhccccCCEEEECCCCC
Confidence            49999999999999999999999999999999877551    112234444332   124467899999988743

>PLN03129 NADP-dependent malic enzyme; Provisional

Probab=95.38  E-value=0.12  Score=58.00  Aligned_cols=121  Identities=16%  Similarity=0.246  Sum_probs=84.6

Q ss_pred             HhHHHHHHHHHHHHH---hhcCccccCcEEEEEcCChhHHHHHHHHHh-----CCC-------EEEEEeCCc--------
Q psy4626          54 DNLYMCRESIIDSLK---RSTDVMFGGKQVVLCGYGEVGKGCCQSLKG-----LGC-------VIYITEIDP--------  110 (542)
Q Consensus        54 d~~~g~~~s~~~ai~---r~~~~~l~GktVvViG~G~IG~~vA~~l~~-----~Ga-------~Viv~d~dp--------  110 (542)
                      |...||+-.++.++.   +.++..+...+++++|+|.-|.++|+.+..     .|.       +++++|...        
T Consensus       295 DDiQGTaaV~lAgll~A~r~~g~~l~d~riv~~GAGsAgigia~ll~~~~~~~~Gls~eeA~~~i~~vD~~GLi~~~r~~  374 (581)
T PLN03129        295 DDIQGTAAVALAGLLAALRATGGDLADQRILFAGAGEAGTGIAELIALAMSRQTGISEEEARKRIWLVDSKGLVTKSRKD  374 (581)
T ss_pred             cccchHHHHHHHHHHHHHHHhCCchhhceEEEECCCHHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEcCCCeEeCCCCc
Confidence            555577655544433   445677888999999999999999988876     476       788777543        


Q ss_pred             ----hhhhhhhcCCceeeCHHHHhcC--CcEEEEcCCCcccCCHHHHhccC---CCeEEEeccCCC--cccChHhh
Q psy4626         111 ----ICALQACMDGFSVVKLNEVIRT--VDIVVTATGNKNVVTREHMDKMK---NGCVVCNMGHSN--TEIDVNSL  175 (542)
Q Consensus       111 ----~r~~~A~~~G~~v~~l~e~l~~--aDvVi~atG~~~lI~~e~l~~mk---~GailvnvG~g~--~eid~~aL  175 (542)
                          .+...|.. .-+..++.++++.  +|++|-+++..++++++.++.|.   +.-+|.-.+...  .|+..+..
T Consensus       375 ~l~~~k~~fa~~-~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~~rPIIFaLSNPt~~~E~~pe~a  449 (581)
T PLN03129        375 SLQPFKKPFAHD-HEPGASLLEAVKAIKPTVLIGLSGVGGTFTKEVLEAMASLNERPIIFALSNPTSKAECTAEEA  449 (581)
T ss_pred             cChHHHHHHHhh-cccCCCHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEEECCCCCCCcCcCHHHH
Confidence                12222322 2234578899877  99999999888899999999995   556666666543  46665544

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=95.36  E-value=0.026  Score=55.84  Aligned_cols=37  Identities=19%  Similarity=0.326  Sum_probs=33.7

Q ss_pred             cccCcEEEEEcCChhHHHHHHHHHhCCC-EEEEEeCCc
Q psy4626          74 MFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDP  110 (542)
Q Consensus        74 ~l~GktVvViG~G~IG~~vA~~l~~~Ga-~Viv~d~dp  110 (542)
                      .+..++|+|+|+|.+|..+|..|...|. +++++|.|.
T Consensus        25 ~L~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~   62 (212)
T PRK08644         25 KLKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDV   62 (212)
T ss_pred             HHhCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence            4678899999999999999999999999 799999883

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=95.36  E-value=0.032  Score=46.00  Aligned_cols=33  Identities=27%  Similarity=0.341  Sum_probs=30.8

Q ss_pred             EEEEEcCChhHHHHHHHHHhCCCEEEEEeCCch
Q psy4626          79 QVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPI  111 (542)
Q Consensus        79 tVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~  111 (542)
                      +|+|+|.|.+|..+|..++.+|.+|+++++++.
T Consensus         1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~   33 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDR   33 (80)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHhCcEEEEEeccch
Confidence            589999999999999999999999999998774

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]

Probab=95.36  E-value=0.024  Score=56.11  Aligned_cols=92  Identities=15%  Similarity=0.194  Sum_probs=64.4

Q ss_pred             ccccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhh--hhcCCceeeC--H-HHHhcCCcEEEEcCCCcccCC
Q psy4626          73 VMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQ--ACMDGFSVVK--L-NEVIRTVDIVVTATGNKNVVT  147 (542)
Q Consensus        73 ~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~--A~~~G~~v~~--l-~e~l~~aDvVi~atG~~~lI~  147 (542)
                      ..+.|++|+|+|.|.+|..=++.+...|++|+|+-.+......  +...+.....  . .+.+..+++||.||.+.. ++
T Consensus         8 ~~l~~k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~~~el~~~~~~~~i~~~~~~~~~~~~~~~~lviaAt~d~~-ln   86 (210)
T COG1648           8 LDLEGKKVLVVGGGSVALRKARLLLKAGADVTVVSPEFEPELKALIEEGKIKWIEREFDAEDLDDAFLVIAATDDEE-LN   86 (210)
T ss_pred             EEcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEcCCccHHHHHHHHhcCcchhhcccChhhhcCceEEEEeCCCHH-HH
Confidence            3578999999999999999999999999999998644411111  1111211111  1 123456999999998754 56


Q ss_pred             HHHHhccCCCeEEEeccC
Q psy4626         148 REHMDKMKNGCVVCNMGH  165 (542)
Q Consensus       148 ~e~l~~mk~GailvnvG~  165 (542)
                      .+.+...++-++++|+.-
T Consensus        87 ~~i~~~a~~~~i~vNv~D  104 (210)
T COG1648          87 ERIAKAARERRILVNVVD  104 (210)
T ss_pred             HHHHHHHHHhCCceeccC
Confidence            677778888889999873

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=95.36  E-value=0.032  Score=51.13  Aligned_cols=86  Identities=12%  Similarity=0.185  Sum_probs=54.7

Q ss_pred             EEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCH--------------H-HHhcCCcEEEEcCCCcc
Q psy4626          80 VVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKL--------------N-EVIRTVDIVVTATGNKN  144 (542)
Q Consensus        80 VvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l--------------~-e~l~~aDvVi~atG~~~  144 (542)
                      ++|+|.|.||...|..|+..|.+|.++.+.+ +...-...|..+...              . .....+|+||.|+-+..
T Consensus         1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~vKa~~   79 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP-RLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAVKAYQ   79 (151)
T ss_dssp             EEEESTSHHHHHHHHHHHHTTCEEEEEESHH-HHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-SSGGG
T ss_pred             CEEECcCHHHHHHHHHHHHCCCceEEEEccc-cHHhhhheeEEEEecccceecccccccCcchhccCCCcEEEEEecccc
Confidence            6899999999999999999999999999877 444333334432211              1 24578999999975433


Q ss_pred             cCC--HHHHhccCCCeEEEeccCC
Q psy4626         145 VVT--REHMDKMKNGCVVCNMGHS  166 (542)
Q Consensus       145 lI~--~e~l~~mk~GailvnvG~g  166 (542)
                      +-.  ...-..+.+.+.++..--|
T Consensus        80 ~~~~l~~l~~~~~~~t~iv~~qNG  103 (151)
T PF02558_consen   80 LEQALQSLKPYLDPNTTIVSLQNG  103 (151)
T ss_dssp             HHHHHHHHCTGEETTEEEEEESSS
T ss_pred             hHHHHHHHhhccCCCcEEEEEeCC
Confidence            321  1222334566566654433

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=95.34  E-value=0.067  Score=58.00  Aligned_cols=68  Identities=24%  Similarity=0.260  Sum_probs=50.8

Q ss_pred             ccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcC--Cceee-----CHH---H-HhcCCcEEEEcCCC
Q psy4626          75 FGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMD--GFSVV-----KLN---E-VIRTVDIVVTATGN  142 (542)
Q Consensus        75 l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~--G~~v~-----~l~---e-~l~~aDvVi~atG~  142 (542)
                      ...++++|+|+|++|+.+++.|...|.+|+++|.+|.+.......  ++.++     +.+   + .+.++|.|+.+++.
T Consensus       229 ~~~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~~~~~~i~gd~~~~~~L~~~~~~~a~~vi~~~~~  307 (453)
T PRK09496        229 KPVKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPERAEELAEELPNTLVLHGDGTDQELLEEEGIDEADAFIALTND  307 (453)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHCCCCeEEECCCCCHHHHHhcCCccCCEEEECCCC
Confidence            457899999999999999999999999999999999875544332  44332     121   1 23678888887654

>PTZ00317 NADP-dependent malic enzyme; Provisional

Probab=95.32  E-value=0.15  Score=57.19  Aligned_cols=123  Identities=17%  Similarity=0.255  Sum_probs=85.3

Q ss_pred             HhHHHHHHHHHHHHH---hhcCccccCcEEEEEcCChhHHHHHHHHHh----CCC-------EEEEEeCC----------
Q psy4626          54 DNLYMCRESIIDSLK---RSTDVMFGGKQVVLCGYGEVGKGCCQSLKG----LGC-------VIYITEID----------  109 (542)
Q Consensus        54 d~~~g~~~s~~~ai~---r~~~~~l~GktVvViG~G~IG~~vA~~l~~----~Ga-------~Viv~d~d----------  109 (542)
                      |...||+-.++.++.   |.++..+...+++++|+|.-|.++|..+..    .|.       +++.+|..          
T Consensus       271 DDiQGTaaV~lAgll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~m~~~Gls~eeA~~~i~~vD~~GLl~~~r~~~  350 (559)
T PTZ00317        271 DDIQGTGAVIAAGFLNALKLSGVPPEEQRIVFFGAGSAAIGVANNIADLAAEYGVTREEALKSFYLVDSKGLVTTTRGDK  350 (559)
T ss_pred             ccchhHHHHHHHHHHHHHHHhCCChhhcEEEEECCCHHHHHHHHHHHHHHHHcCCChhHhcCeEEEEcCCCeEeCCCCcc
Confidence            555577655544433   445677889999999999999999988873    687       78888743          


Q ss_pred             --chhhhhhhcC-Cce---eeCHHHHhcCC--cEEEEcCCCcccCCHHHHhccCC---CeEEEeccCCC--cccChHhhc
Q psy4626         110 --PICALQACMD-GFS---VVKLNEVIRTV--DIVVTATGNKNVVTREHMDKMKN---GCVVCNMGHSN--TEIDVNSLR  176 (542)
Q Consensus       110 --p~r~~~A~~~-G~~---v~~l~e~l~~a--DvVi~atG~~~lI~~e~l~~mk~---GailvnvG~g~--~eid~~aL~  176 (542)
                        +.+...|+.. ...   ..++.++++.+  |++|-+++.+++++++.++.|.+   .-+|.-.+...  .|+..+...
T Consensus       351 l~~~k~~fa~~~~~~~~~~~~~L~e~v~~~KPtvLIG~S~~~g~Ft~evv~~Ma~~~~rPIIFaLSNPt~~aE~tpeda~  430 (559)
T PTZ00317        351 LAKHKVPFARTDISAEDSSLKTLEDVVRFVKPTALLGLSGVGGVFTEEVVKTMASNVERPIIFPLSNPTSKAECTAEDAY  430 (559)
T ss_pred             ccHHHHHHhccccccccccCCCHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEEECCCCCCCCCcCHHHHH
Confidence              2233334432 111   45788888766  99999998889999999999974   56666666553  466655443

>KOG1201|consensus

Probab=95.30  E-value=0.11  Score=53.73  Aligned_cols=71  Identities=20%  Similarity=0.258  Sum_probs=51.9

Q ss_pred             cCccccCcEEEEEcCCh-hHHHHHHHHHhCCCEEEEEeCCchhhhh----hhcCC---cee---eCHHHH----------
Q psy4626          71 TDVMFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQ----ACMDG---FSV---VKLNEV----------  129 (542)
Q Consensus        71 ~~~~l~GktVvViG~G~-IG~~vA~~l~~~Ga~Viv~d~dp~r~~~----A~~~G---~~v---~~l~e~----------  129 (542)
                      .....+|++|+|.|.|. +|+.+|.-+..+|+++++||+++.-..+    ....|   +.+   .+.+++          
T Consensus        32 ~~k~v~g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~~etv~~~~~~g~~~~y~cdis~~eei~~~a~~Vk~e  111 (300)
T KOG1201|consen   32 PLKSVSGEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNEETVKEIRKIGEAKAYTCDISDREEIYRLAKKVKKE  111 (300)
T ss_pred             chhhccCCEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccchHHHHHHHHhcCceeEEEecCCCHHHHHHHHHHHHHh
Confidence            33568999999999985 8999999999999999999999864432    22223   122   333432          


Q ss_pred             hcCCcEEEEcCC
Q psy4626         130 IRTVDIVVTATG  141 (542)
Q Consensus       130 l~~aDvVi~atG  141 (542)
                      ....|++|+..|
T Consensus       112 ~G~V~ILVNNAG  123 (300)
T KOG1201|consen  112 VGDVDILVNNAG  123 (300)
T ss_pred             cCCceEEEeccc
Confidence            357899999766

>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase

Probab=95.29  E-value=0.047  Score=58.27  Aligned_cols=83  Identities=20%  Similarity=0.322  Sum_probs=56.3

Q ss_pred             EEEEcCChhHHHHHHHHHhCCC--EEEEEeCCchhhhhhhc----CCceee-----C---HHHHhcCCcEEEEcCCCccc
Q psy4626          80 VVLCGYGEVGKGCCQSLKGLGC--VIYITEIDPICALQACM----DGFSVV-----K---LNEVIRTVDIVVTATGNKNV  145 (542)
Q Consensus        80 VvViG~G~IG~~vA~~l~~~Ga--~Viv~d~dp~r~~~A~~----~G~~v~-----~---l~e~l~~aDvVi~atG~~~l  145 (542)
                      |+|+|+|.+|+.+++.|...+-  +|++.|+++.++.....    ..+...     +   +.++++++|+||+|.|..  
T Consensus         1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~gp~--   78 (386)
T PF03435_consen    1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVNDPESLAELLRGCDVVINCAGPF--   78 (386)
T ss_dssp             EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-SSGG--
T ss_pred             CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCCHHHHHHHHhcCCEEEECCccc--
Confidence            6899999999999999998874  89999999988654322    233322     2   345678999999998764  


Q ss_pred             CCHHHHh-ccCCCeEEEecc
Q psy4626         146 VTREHMD-KMKNGCVVCNMG  164 (542)
Q Consensus       146 I~~e~l~-~mk~GailvnvG  164 (542)
                      .+...++ .++.|.-.++++
T Consensus        79 ~~~~v~~~~i~~g~~yvD~~   98 (386)
T PF03435_consen   79 FGEPVARACIEAGVHYVDTS   98 (386)
T ss_dssp             GHHHHHHHHHHHT-EEEESS
T ss_pred             hhHHHHHHHHHhCCCeeccc
Confidence            3333333 357788888855

Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.

>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family

Probab=95.28  E-value=0.049  Score=55.28  Aligned_cols=85  Identities=18%  Similarity=0.251  Sum_probs=57.5

Q ss_pred             EEEEcC-ChhHHHHHHHHHhCC----CEEEEEeCCchhhhhhhc-------C--Ccee---eCHHHHhcCCcEEEEcCCC
Q psy4626          80 VVLCGY-GEVGKGCCQSLKGLG----CVIYITEIDPICALQACM-------D--GFSV---VKLNEVIRTVDIVVTATGN  142 (542)
Q Consensus        80 VvViG~-G~IG~~vA~~l~~~G----a~Viv~d~dp~r~~~A~~-------~--G~~v---~~l~e~l~~aDvVi~atG~  142 (542)
                      |+|+|+ |.+|..++..+...|    .++..+|+++.++....+       .  ...+   .++.+.+++||+||.+.|.
T Consensus         1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~~~~aDiVv~t~~~   80 (263)
T cd00650           1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAFKDADVVIITAGV   80 (263)
T ss_pred             CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEECCchHHHhCCCCEEEECCCC
Confidence            579999 999999999998888    699999998865432111       0  1111   2346788999999997753


Q ss_pred             ccc---------------CC--HHHHhccCCCeEEEecc
Q psy4626         143 KNV---------------VT--REHMDKMKNGCVVCNMG  164 (542)
Q Consensus       143 ~~l---------------I~--~e~l~~mk~GailvnvG  164 (542)
                      +..               +.  .+.++...+.+++++++
T Consensus        81 ~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~~i~~t  119 (263)
T cd00650          81 GRKPGMGRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVVS  119 (263)
T ss_pred             CCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence            211               11  22344445888888885

Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains

>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway

Probab=95.28  E-value=0.031  Score=49.43  Aligned_cols=82  Identities=23%  Similarity=0.346  Sum_probs=50.0

Q ss_pred             cCChhHHHHHHHHHhC----CCEEE-EEeCCch--hhhhh-hcCCceeeCHHHHhc--CCcEEEEcCCCcccCCHHHHhc
Q psy4626          84 GYGEVGKGCCQSLKGL----GCVIY-ITEIDPI--CALQA-CMDGFSVVKLNEVIR--TVDIVVTATGNKNVVTREHMDK  153 (542)
Q Consensus        84 G~G~IG~~vA~~l~~~----Ga~Vi-v~d~dp~--r~~~A-~~~G~~v~~l~e~l~--~aDvVi~atG~~~lI~~e~l~~  153 (542)
                      |+|.||+.++..+...    +.+|. ++++++.  ..... ......+.++++++.  ..|+||+|++...+. .-..+.
T Consensus         1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvVE~t~~~~~~-~~~~~~   79 (117)
T PF03447_consen    1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRSMLISKDWAASFPDEAFTTDLEELIDDPDIDVVVECTSSEAVA-EYYEKA   79 (117)
T ss_dssp             --SHHHHHHHHHHHHTHHHCEEEEEEEEESSEEEETTHHHHHTHSCEESSHHHHHTHTT-SEEEE-SSCHHHH-HHHHHH
T ss_pred             CCCHHHHHHHHHHHhCcccCCEEEEEEEECCchhhhhhhhhcccccccCCHHHHhcCcCCCEEEECCCchHHH-HHHHHH
Confidence            8999999999999876    56544 4566611  11111 122334567788876  899999997764433 345667


Q ss_pred             cCCCeEEEeccCC
Q psy4626         154 MKNGCVVCNMGHS  166 (542)
Q Consensus       154 mk~GailvnvG~g  166 (542)
                      |+.|.-++...-+
T Consensus        80 L~~G~~VVt~nk~   92 (117)
T PF03447_consen   80 LERGKHVVTANKG   92 (117)
T ss_dssp             HHTTCEEEES-HH
T ss_pred             HHCCCeEEEECHH
Confidence            8888888865533

Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....

>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.27  E-value=0.043  Score=59.43  Aligned_cols=84  Identities=19%  Similarity=0.123  Sum_probs=54.6

Q ss_pred             CcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce-eeCHHHHhcCCcEEEEcCCCcccCCHHHHhccC
Q psy4626          77 GKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVKLNEVIRTVDIVVTATGNKNVVTREHMDKMK  155 (542)
Q Consensus        77 GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~-v~~l~e~l~~aDvVi~atG~~~lI~~e~l~~mk  155 (542)
                      .++|+|+|.|.+|..+|+.|+..|.+|+++|.++............ ....+....++|+||.++|.+.. +...-+..+
T Consensus         3 ~~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvV~s~gi~~~-~~~l~~A~~   81 (418)
T PRK00683          3 LQRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSLEALQSCPYIHERYLENAEEFPEQVDLVVRSPGIKKE-HPWVQAAIA   81 (418)
T ss_pred             CCeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCccccchhHHHhhhhcCCcHHHhcCCCEEEECCCCCCC-cHHHHHHHH
Confidence            4689999999999999999999999999999776432211000000 11222334779999999886532 333334445


Q ss_pred             CCeEEE
Q psy4626         156 NGCVVC  161 (542)
Q Consensus       156 ~Gailv  161 (542)
                      .|+.++
T Consensus        82 ~g~~vv   87 (418)
T PRK00683         82 SHIPVV   87 (418)
T ss_pred             CCCcEE
Confidence            665543

>PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional

Probab=95.18  E-value=0.27  Score=51.49  Aligned_cols=119  Identities=24%  Similarity=0.340  Sum_probs=76.3

Q ss_pred             hcccccceeecCch----hhhHHHHhHHHHHHHHHHHHHhhcCccccCcEEEEEcC---ChhHHHHHHHHHhCCCEEEEE
Q psy4626          34 AGKLTVPAMNVNDS----VTKTKFDNLYMCRESIIDSLKRSTDVMFGGKQVVLCGY---GEVGKGCCQSLKGLGCVIYIT  106 (542)
Q Consensus        34 ~~~L~~PV~~vn~s----~~K~~fd~~~g~~~s~~~ai~r~~~~~l~GktVvViG~---G~IG~~vA~~l~~~Ga~Viv~  106 (542)
                      .....+||||.-+.    ++-.+.|-.         .+.+..+ .+.|.+|+++|-   |++....+..+..+|++|.++
T Consensus       119 a~~~~vPVINa~~g~~~HPtQ~LaDl~---------Ti~e~~G-~l~g~kv~~vGD~~~~~v~~Sl~~~~~~~g~~~~~~  188 (305)
T PRK00856        119 AESSDVPVINAGDGSHQHPTQALLDLL---------TIREEFG-RLEGLKVAIVGDIKHSRVARSNIQALTRLGAEVRLI  188 (305)
T ss_pred             HHHCCCCEEECCCCCCCCcHHHHHHHH---------HHHHHhC-CCCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEE
Confidence            34467889888542    333333311         1222222 478999999998   488999999999999999998


Q ss_pred             eCCchhhhhhhcCCce-eeCHHHHhcCCcEEEEcCCC-----------------cccCCHHHHhccCCCeEEEecc
Q psy4626         107 EIDPICALQACMDGFS-VVKLNEVIRTVDIVVTATGN-----------------KNVVTREHMDKMKNGCVVCNMG  164 (542)
Q Consensus       107 d~dp~r~~~A~~~G~~-v~~l~e~l~~aDvVi~atG~-----------------~~lI~~e~l~~mk~GailvnvG  164 (542)
                      -+.......  ...+. ..+++++++++|+|.+....                 .-.++.+.++.+++++++.-+.
T Consensus       189 ~P~~~~~~~--~~~~~~~~d~~ea~~~aDvvyt~~~q~e~~~~~~~~~~~~~~~~y~v~~~ll~~a~~~~~~mHcL  262 (305)
T PRK00856        189 APPTLLPEG--MPEYGVHTDLDEVIEDADVVMMLRVQKERMDGGLLPSYEEYKRSYGLTAERLALAKPDAIVMHPG  262 (305)
T ss_pred             CCcccCccc--ccceEEECCHHHHhCCCCEEEECCcccccccccchHHHHHHhccCccCHHHHhhcCCCCEEECCC
Confidence            643332111  11122 34678999999999986421                 2335566677777777766544

>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=95.15  E-value=0.037  Score=51.14  Aligned_cols=65  Identities=26%  Similarity=0.242  Sum_probs=46.6

Q ss_pred             EEEEEcC-ChhHHHHHHHHHhCCC--EEEEEeCCchhhh-hhhc-------CCce---eeCHHHHhcCCcEEEEcCCCc
Q psy4626          79 QVVLCGY-GEVGKGCCQSLKGLGC--VIYITEIDPICAL-QACM-------DGFS---VVKLNEVIRTVDIVVTATGNK  143 (542)
Q Consensus        79 tVvViG~-G~IG~~vA~~l~~~Ga--~Viv~d~dp~r~~-~A~~-------~G~~---v~~l~e~l~~aDvVi~atG~~  143 (542)
                      +|+|+|+ |.+|..+|..|...|.  ++..+|+++.++. ++..       ....   .....+.+++||+||.+.|.+
T Consensus         2 KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~~aDivvitag~~   80 (141)
T PF00056_consen    2 KVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSGDYEALKDADIVVITAGVP   80 (141)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEESSGGGGTTESEEEETTSTS
T ss_pred             EEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhcccccccccccccccccccEEEEecccc
Confidence            7999999 9999999999987665  8999999875432 1111       1111   123456788999999988864

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=95.15  E-value=0.042  Score=57.33  Aligned_cols=65  Identities=25%  Similarity=0.271  Sum_probs=47.2

Q ss_pred             EEEEEcCChhHHHHHHHHHhCC--CEEEEEeCCchhhh-hhhc--CCcee-------eCHHHHhcCCcEEEEcCCCc
Q psy4626          79 QVVLCGYGEVGKGCCQSLKGLG--CVIYITEIDPICAL-QACM--DGFSV-------VKLNEVIRTVDIVVTATGNK  143 (542)
Q Consensus        79 tVvViG~G~IG~~vA~~l~~~G--a~Viv~d~dp~r~~-~A~~--~G~~v-------~~l~e~l~~aDvVi~atG~~  143 (542)
                      +|+|+|.|.+|..+|..+...|  -+|.++|+++.++. ++..  .....       ....+.+++||++|.|.|.+
T Consensus         2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d~~~l~~aDiViita~~~   78 (308)
T cd05292           2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAGDYADCKGADVVVITAGAN   78 (308)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEeeCCHHHhCCCCEEEEccCCC
Confidence            6999999999999999999989  48999999886543 2211  11111       11235578999999988753

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins

Probab=95.06  E-value=0.097  Score=54.21  Aligned_cols=63  Identities=25%  Similarity=0.212  Sum_probs=43.8

Q ss_pred             EEEEcCChhHHHHHHHHHhCCC-EEEEEeCCchhhh-hhh-------cCCc--eee--CHHHHhcCCcEEEEcCCC
Q psy4626          80 VVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICAL-QAC-------MDGF--SVV--KLNEVIRTVDIVVTATGN  142 (542)
Q Consensus        80 VvViG~G~IG~~vA~~l~~~Ga-~Viv~d~dp~r~~-~A~-------~~G~--~v~--~l~e~l~~aDvVi~atG~  142 (542)
                      |+|+|+|.+|..+|..+...|. +|+++|+++.++. ++.       ..+.  .+.  .-.+.+++||+||.+.|.
T Consensus         1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I~~t~d~~~l~dADiVIit~g~   76 (300)
T cd01339           1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVEGLPQGKALDISQAAPILGSDTKVTGTNDYEDIAGSDVVVITAGI   76 (300)
T ss_pred             CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEEEEcCCHHHhCCCCEEEEecCC
Confidence            5899999999999999886665 9999999986532 110       0111  111  113458999999998764

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas

>PRK00779 ornithine carbamoyltransferase; Provisional

Probab=95.05  E-value=0.4  Score=50.11  Aligned_cols=131  Identities=19%  Similarity=0.175  Sum_probs=83.8

Q ss_pred             hcccccceeecCchhhhHHHHhHHHHHHHHHH--HHHhhcCccccCcEEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCc
Q psy4626          34 AGKLTVPAMNVNDSVTKTKFDNLYMCRESIID--SLKRSTDVMFGGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDP  110 (542)
Q Consensus        34 ~~~L~~PV~~vn~s~~K~~fd~~~g~~~s~~~--ai~r~~~~~l~GktVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp  110 (542)
                      .....+||||.-+.. -+.       -|++.+  .+.+..+ .+.|.+|+++|- +.+-+..+..+..+|++|.++-+..
T Consensus       116 a~~~~vPVINag~~~-~HP-------tQaL~Dl~Ti~e~~g-~l~gl~i~~vGd~~~v~~Sl~~~l~~~g~~v~~~~P~~  186 (304)
T PRK00779        116 AEYSTVPVINGLTDL-SHP-------CQILADLLTIYEHRG-SLKGLKVAWVGDGNNVANSLLLAAALLGFDLRVATPKG  186 (304)
T ss_pred             HHhCCCCEEeCCCCC-CCh-------HHHHHHHHHHHHHhC-CcCCcEEEEEeCCCccHHHHHHHHHHcCCEEEEECCcc
Confidence            445678999886531 111       133322  2333223 478999999998 6788888999999999999985433


Q ss_pred             hhhh-----h-hhcCCce---eeCHHHHhcCCcEEEEcC----C------------CcccCCHHHHhccCCCeEEEeccC
Q psy4626         111 ICAL-----Q-ACMDGFS---VVKLNEVIRTVDIVVTAT----G------------NKNVVTREHMDKMKNGCVVCNMGH  165 (542)
Q Consensus       111 ~r~~-----~-A~~~G~~---v~~l~e~l~~aDvVi~at----G------------~~~lI~~e~l~~mk~GailvnvG~  165 (542)
                      ....     + +...|..   ..+++++++++|+|....    +            ..--++.+.++.+|+++++.-.+-
T Consensus       187 ~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~l~~~~~~~ivmHplP  266 (304)
T PRK00779        187 YEPDPEIVEKIAKETGASIEVTHDPKEAVKGADVVYTDVWVSMGQEAEAEERLKAFAPYQVNEELMALAKPDAIFMHCLP  266 (304)
T ss_pred             cCCCHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEecCccccccchhHHHHHHHhcccCCCHHHHHhcCCCeEEecCCC
Confidence            2211     0 3334533   346889999999999852    1            123456677888888888877665


Q ss_pred             C--CcccChH
Q psy4626         166 S--NTEIDVN  173 (542)
Q Consensus       166 g--~~eid~~  173 (542)
                      .  ..|++-+
T Consensus       267 ~~R~~Ei~~~  276 (304)
T PRK00779        267 AHRGEEVTDE  276 (304)
T ss_pred             ccCCCcccHH
Confidence            2  3454443

>PRK06223 malate dehydrogenase; Reviewed

Probab=95.04  E-value=0.051  Score=56.27  Aligned_cols=64  Identities=25%  Similarity=0.290  Sum_probs=45.5

Q ss_pred             cEEEEEcCChhHHHHHHHHHhCCC-EEEEEeCCchhhhh-hhc--C-----Cc--ee---eCHHHHhcCCcEEEEcCCC
Q psy4626          78 KQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQ-ACM--D-----GF--SV---VKLNEVIRTVDIVVTATGN  142 (542)
Q Consensus        78 ktVvViG~G~IG~~vA~~l~~~Ga-~Viv~d~dp~r~~~-A~~--~-----G~--~v---~~l~e~l~~aDvVi~atG~  142 (542)
                      ++|+|+|.|.+|..+|..+...|. +|+++|+++.++.. +..  +     +.  .+   .+. +.+++||+||.+.|.
T Consensus         3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~-~~~~~aDiVii~~~~   80 (307)
T PRK06223          3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDY-EDIAGSDVVVITAGV   80 (307)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCH-HHHCCCCEEEECCCC
Confidence            589999999999999999987764 99999998865421 110  1     11  11   122 457899999998764

>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.03  E-value=0.051  Score=59.43  Aligned_cols=69  Identities=22%  Similarity=0.331  Sum_probs=50.6

Q ss_pred             ccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCH-HHHhcCCcEEEEcCCCc
Q psy4626          75 FGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKL-NEVIRTVDIVVTATGNK  143 (542)
Q Consensus        75 l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l-~e~l~~aDvVi~atG~~  143 (542)
                      +.|++|.|+|.|..|..+|+.|+..|++|.++|..+.........|+.+... .+.+.++|+||-++|-+
T Consensus         7 ~~~~~i~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~~~~~~d~vv~sp~i~   76 (460)
T PRK01390          7 FAGKTVAVFGLGGSGLATARALVAGGAEVIAWDDNPASRAKAAAAGITTADLRTADWSGFAALVLSPGVP   76 (460)
T ss_pred             cCCCEEEEEeecHhHHHHHHHHHHCCCEEEEECCChhhHHHHHhcCccccCCChhHHcCCCEEEECCCCC
Confidence            5689999999999999999999999999999997654332223346543322 23356799999877643

>cd00300 LDH_like L-lactate dehydrogenase-like enzymes

Probab=95.00  E-value=0.086  Score=54.77  Aligned_cols=86  Identities=19%  Similarity=0.222  Sum_probs=57.3

Q ss_pred             EEEEcCChhHHHHHHHHHhCCC--EEEEEeCCchhhhh-hh------cC-Cc-eee--CHHHHhcCCcEEEEcCCCcccC
Q psy4626          80 VVLCGYGEVGKGCCQSLKGLGC--VIYITEIDPICALQ-AC------MD-GF-SVV--KLNEVIRTVDIVVTATGNKNVV  146 (542)
Q Consensus        80 VvViG~G~IG~~vA~~l~~~Ga--~Viv~d~dp~r~~~-A~------~~-G~-~v~--~l~e~l~~aDvVi~atG~~~lI  146 (542)
                      +.|+|+|.||..+|..+...|.  +++++|+++.++.. +.      .. .. .+.  +-.+.+++||+||.|.|.+.--
T Consensus         1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~~~~~~l~~aDiVIitag~p~~~   80 (300)
T cd00300           1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGGDYADAADADIVVITAGAPRKP   80 (300)
T ss_pred             CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEECCCHHHhCCCCEEEEcCCCCCCC
Confidence            5799999999999999998884  89999998865431 11      10 10 111  1135789999999998853211


Q ss_pred             --C---------------HHHHhccCCCeEEEeccC
Q psy4626         147 --T---------------REHMDKMKNGCVVCNMGH  165 (542)
Q Consensus       147 --~---------------~e~l~~mk~GailvnvG~  165 (542)
                        +               .+.+..-.+.+++++++-
T Consensus        81 ~~~R~~l~~~n~~i~~~~~~~i~~~~p~~~viv~sN  116 (300)
T cd00300          81 GETRLDLINRNAPILRSVITNLKKYGPDAIILVVSN  116 (300)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccC
Confidence              1               123334457888888883

Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot

>PLN02527 aspartate carbamoyltransferase

Probab=94.99  E-value=0.42  Score=50.02  Aligned_cols=121  Identities=21%  Similarity=0.247  Sum_probs=74.4

Q ss_pred             hcccccceeecCch----hhhHHHHhHHHHHHHHHHHHHhhcCccccCcEEEEEcCC---hhHHHHHHHHHhC-CCEEEE
Q psy4626          34 AGKLTVPAMNVNDS----VTKTKFDNLYMCRESIIDSLKRSTDVMFGGKQVVLCGYG---EVGKGCCQSLKGL-GCVIYI  105 (542)
Q Consensus        34 ~~~L~~PV~~vn~s----~~K~~fd~~~g~~~s~~~ai~r~~~~~l~GktVvViG~G---~IG~~vA~~l~~~-Ga~Viv  105 (542)
                      .....+||||.-+.    ++-.+.|-.         .+.+..+ .+.|.+|+++|-+   ++....+..+..+ |++|.+
T Consensus       114 a~~~~vPVINa~~g~~~HPtQ~LaDl~---------Ti~e~~g-~l~g~kva~vGD~~~~rv~~Sl~~~~~~~~g~~v~~  183 (306)
T PLN02527        114 AATAEIPVINAGDGPGQHPTQALLDVY---------TIQREIG-RLDGIKVGLVGDLANGRTVRSLAYLLAKYEDVKIYF  183 (306)
T ss_pred             HHhCCCCEEECCCCCCCChHHHHHHHH---------HHHHHhC-CcCCCEEEEECCCCCChhHHHHHHHHHhcCCCEEEE
Confidence            34467799988442    333333321         2222222 3789999999976   5778888887777 999988


Q ss_pred             EeCCchh-----hhhhhcCCce---eeCHHHHhcCCcEEEEcCCC----------------cccCCHHHHhccCCCeEEE
Q psy4626         106 TEIDPIC-----ALQACMDGFS---VVKLNEVIRTVDIVVTATGN----------------KNVVTREHMDKMKNGCVVC  161 (542)
Q Consensus       106 ~d~dp~r-----~~~A~~~G~~---v~~l~e~l~~aDvVi~atG~----------------~~lI~~e~l~~mk~Gailv  161 (542)
                      +-+....     ...+...|..   ..+++++++++|||.+....                .-.++.+.++..++++++.
T Consensus       184 ~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvyt~~~q~e~~~~~~~~~~~~~~~y~v~~~ll~~a~~~~ivm  263 (306)
T PLN02527        184 VAPDVVKMKDDIKDYLTSKGVEWEESSDLMEVASKCDVLYQTRIQRERFGERIDLYEAARGKYIVDKKVMDVLPKHAVVM  263 (306)
T ss_pred             ECCCccCCCHHHHHHHHHcCCEEEEEcCHHHHhCCCCEEEECCcchhhhcchHHHHHHhCCCceECHHHHhccCCCCEEE
Confidence            7543321     1123334443   34788999999999985321                1234455566667777666


Q ss_pred             ecc
Q psy4626         162 NMG  164 (542)
Q Consensus       162 nvG  164 (542)
                      -+.
T Consensus       264 Hcl  266 (306)
T PLN02527        264 HPL  266 (306)
T ss_pred             CCC
Confidence            444

>cd08251 polyketide_synthase polyketide synthase

Probab=94.85  E-value=0.34  Score=48.29  Aligned_cols=91  Identities=18%  Similarity=0.257  Sum_probs=67.5

Q ss_pred             cccCcEEEEE-cCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce-eeC-----HHH----Hh--cCCcEEEEcC
Q psy4626          74 MFGGKQVVLC-GYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVK-----LNE----VI--RTVDIVVTAT  140 (542)
Q Consensus        74 ~l~GktVvVi-G~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~-v~~-----l~e----~l--~~aDvVi~at  140 (542)
                      ...|.+|+|. |.|.+|..+++.++++|++|+++..++.+...+...|.+ +++     ..+    ..  .+.|+++++.
T Consensus       118 ~~~g~~vli~~~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~d~v~~~~  197 (303)
T cd08251         118 LAKGEHILIQTATGGTGLMAVQLARLKGAEIYATASSDDKLEYLKQLGVPHVINYVEEDFEEEIMRLTGGRGVDVVINTL  197 (303)
T ss_pred             CCCCCEEEEecCCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHcCCCEEEeCCCccHHHHHHHHcCCCCceEEEECC
Confidence            4578999996 468999999999999999999998777666655555643 221     211    12  4689999988


Q ss_pred             CCcccCCHHHHhccCCCeEEEeccCC
Q psy4626         141 GNKNVVTREHMDKMKNGCVVCNMGHS  166 (542)
Q Consensus       141 G~~~lI~~e~l~~mk~GailvnvG~g  166 (542)
                      +.. .+ .+.++.+++++.+++.|..
T Consensus       198 ~~~-~~-~~~~~~l~~~g~~v~~~~~  221 (303)
T cd08251         198 SGE-AI-QKGLNCLAPGGRYVEIAMT  221 (303)
T ss_pred             cHH-HH-HHHHHHhccCcEEEEEecc
Confidence            653 34 3678889999999998864

Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde a

>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]

Probab=94.84  E-value=0.12  Score=52.22  Aligned_cols=88  Identities=20%  Similarity=0.307  Sum_probs=64.0

Q ss_pred             EEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce-eeCHHHHh---cCCcEEEEcC--C--CcccCCHHH
Q psy4626          79 QVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVKLNEVI---RTVDIVVTAT--G--NKNVVTREH  150 (542)
Q Consensus        79 tVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~-v~~l~e~l---~~aDvVi~at--G--~~~lI~~e~  150 (542)
                      +++.||.|.+|..+++++...|-.|+++|++|.....+...|+. +.++++.+   ..+-+|-.-.  |  +..+++ +.
T Consensus         2 ~iGmiGLGrMG~n~v~rl~~~ghdvV~yD~n~~av~~~~~~ga~~a~sl~el~~~L~~pr~vWlMvPag~it~~vi~-~l   80 (300)
T COG1023           2 QIGMIGLGRMGANLVRRLLDGGHDVVGYDVNQTAVEELKDEGATGAASLDELVAKLSAPRIVWLMVPAGDITDAVID-DL   80 (300)
T ss_pred             cceeeccchhhHHHHHHHHhCCCeEEEEcCCHHHHHHHHhcCCccccCHHHHHHhcCCCcEEEEEccCCCchHHHHH-HH
Confidence            67899999999999999999999999999999887777777765 44566653   4445554421  2  333442 44


Q ss_pred             HhccCCCeEEEeccCCC
Q psy4626         151 MDKMKNGCVVCNMGHSN  167 (542)
Q Consensus       151 l~~mk~GailvnvG~g~  167 (542)
                      -..|..|-++|.-|-..
T Consensus        81 a~~L~~GDivIDGGNS~   97 (300)
T COG1023          81 APLLSAGDIVIDGGNSN   97 (300)
T ss_pred             HhhcCCCCEEEECCccc
Confidence            55677888888877654

>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=94.83  E-value=0.056  Score=57.94  Aligned_cols=87  Identities=17%  Similarity=0.189  Sum_probs=59.7

Q ss_pred             cEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce-ee--CHH------------------HHhcCCcEE
Q psy4626          78 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VV--KLN------------------EVIRTVDIV  136 (542)
Q Consensus        78 ktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~-v~--~l~------------------e~l~~aDvV  136 (542)
                      .+++|+|.|-||+-+|..+...|.+|+.+|+++.+-.. ...|.. ..  +++                  +.++.||++
T Consensus        10 ~~I~ViGLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~-ln~G~~~i~e~~~~~~v~~~v~~g~lraTtd~~~l~~~dv~   88 (436)
T COG0677          10 ATIGVIGLGYVGLPLAAAFASAGFKVIGVDINQKKVDK-LNRGESYIEEPDLDEVVKEAVESGKLRATTDPEELKECDVF   88 (436)
T ss_pred             eEEEEEccccccHHHHHHHHHcCCceEeEeCCHHHHHH-HhCCcceeecCcHHHHHHHHHhcCCceEecChhhcccCCEE
Confidence            79999999999999999999999999999999976542 223322 11  122                  223589999


Q ss_pred             EEcCCCcccC----C--------HHHHhccCCCeEEEeccC
Q psy4626         137 VTATGNKNVV----T--------REHMDKMKNGCVVCNMGH  165 (542)
Q Consensus       137 i~atG~~~lI----~--------~e~l~~mk~GailvnvG~  165 (542)
                      +.|.-|+---    +        +..-..|++|..++--+.
T Consensus        89 iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST  129 (436)
T COG0677          89 IICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILEST  129 (436)
T ss_pred             EEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecC
Confidence            9986432111    0        223456899998885444

>TIGR00658 orni_carb_tr ornithine carbamoyltransferase

Probab=94.83  E-value=0.48  Score=49.55  Aligned_cols=131  Identities=18%  Similarity=0.170  Sum_probs=82.9

Q ss_pred             hcccccceeecCchhhhHHHHhHHHHHHHHHH--HHHhhcCccccCcEEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCc
Q psy4626          34 AGKLTVPAMNVNDSVTKTKFDNLYMCRESIID--SLKRSTDVMFGGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDP  110 (542)
Q Consensus        34 ~~~L~~PV~~vn~s~~K~~fd~~~g~~~s~~~--ai~r~~~~~l~GktVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp  110 (542)
                      .....+||||..+. .-+.       -|++.+  .+.+..+ .+.|.+|+++|- +.+-+..+..+..+|++|.++-+..
T Consensus       112 a~~~~vPVINa~~~-~~HP-------tQaL~Dl~Ti~e~~g-~l~g~~v~~vGd~~~v~~Sl~~~l~~~g~~v~~~~P~~  182 (304)
T TIGR00658       112 AKYASVPVINGLTD-LFHP-------CQALADLLTIIEHFG-KLKGVKVVYVGDGNNVCNSLMLAGAKLGMDVVVATPEG  182 (304)
T ss_pred             HHhCCCCEEECCCC-CCCh-------HHHHHHHHHHHHHhC-CCCCcEEEEEeCCCchHHHHHHHHHHcCCEEEEECCch
Confidence            44677899998653 1111       122322  2333333 378999999998 5677888889999999999986433


Q ss_pred             hhhh-----h----hhcCCce---eeCHHHHhcCCcEEEEcC----C------------CcccCCHHHHhccCCCeEEEe
Q psy4626         111 ICAL-----Q----ACMDGFS---VVKLNEVIRTVDIVVTAT----G------------NKNVVTREHMDKMKNGCVVCN  162 (542)
Q Consensus       111 ~r~~-----~----A~~~G~~---v~~l~e~l~~aDvVi~at----G------------~~~lI~~e~l~~mk~Gailvn  162 (542)
                      ....     +    +...|..   ..+++++++++|+|....    +            ..-.++.+.++.+|+++++.-
T Consensus       183 ~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvy~~~w~~~~~~~~~~~~~~~~~~y~l~~~~l~~~~~~~ivmH  262 (304)
T TIGR00658       183 YEPDADIVKKAQEIAKENGGSVELTHDPVEAVKGADVIYTDVWVSMGEEDKKEERLKLFRPYQVNEELMELAKPEVIFMH  262 (304)
T ss_pred             hcCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEcCcccCccccccHHHHHHhcCCcCCHHHHhhcCCCCEEEC
Confidence            2211     1    2334532   347889999999999843    1            122566777888888888776


Q ss_pred             ccCC--CcccChH
Q psy4626         163 MGHS--NTEIDVN  173 (542)
Q Consensus       163 vG~g--~~eid~~  173 (542)
                      .+--  +.|++-+
T Consensus       263 plP~~rg~Ei~~~  275 (304)
T TIGR00658       263 CLPAHRGEEVTDE  275 (304)
T ss_pred             CCCCCCCceeCHH
Confidence            6643  2344433

Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=94.81  E-value=0.045  Score=57.96  Aligned_cols=37  Identities=24%  Similarity=0.372  Sum_probs=34.0

Q ss_pred             cccCcEEEEEcCChhHHHHHHHHHhCCC-EEEEEeCCc
Q psy4626          74 MFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDP  110 (542)
Q Consensus        74 ~l~GktVvViG~G~IG~~vA~~l~~~Ga-~Viv~d~dp  110 (542)
                      .+..++|+|+|+|-+|..+|..|...|. +++++|.|.
T Consensus        21 ~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~   58 (339)
T PRK07688         21 KLREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDY   58 (339)
T ss_pred             HhcCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence            4678899999999999999999999999 999999874

>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional

Probab=94.79  E-value=0.098  Score=55.45  Aligned_cols=86  Identities=22%  Similarity=0.300  Sum_probs=53.2

Q ss_pred             EEEEEcCChhHHHHHHHHHhC-CCEEEE-EeCCchhhh-hhhcCCc------------------eee-CHHHHhcCCcEE
Q psy4626          79 QVVLCGYGEVGKGCCQSLKGL-GCVIYI-TEIDPICAL-QACMDGF------------------SVV-KLNEVIRTVDIV  136 (542)
Q Consensus        79 tVvViG~G~IG~~vA~~l~~~-Ga~Viv-~d~dp~r~~-~A~~~G~------------------~v~-~l~e~l~~aDvV  136 (542)
                      +|+|+|+|.||+.+++.+... +++++. +|.+|.... .+...|+                  .+. ++++++.++|+|
T Consensus         3 kVaI~G~GrIGr~va~al~~~~d~eLvav~d~~~~~~~~la~~~G~~~~~~~~~~~~~~~~~~i~V~~~~~el~~~vDVV   82 (341)
T PRK04207          3 KVGVNGYGTIGKRVADAVAAQPDMELVGVAKTKPDYEARVAVEKGYPLYVADPEREKAFEEAGIPVAGTIEDLLEKADIV   82 (341)
T ss_pred             EEEEECCCHHHHHHHHHHhcCCCcEEEEEECCChHHHHHHHHhcCCCccccCccccccccCCceEEcCChhHhhccCCEE
Confidence            799999999999999988754 677665 565553222 1222222                  121 345666789999


Q ss_pred             EEcCCCcccCCHHHHhccCCCeEEEeccC
Q psy4626         137 VTATGNKNVVTREHMDKMKNGCVVCNMGH  165 (542)
Q Consensus       137 i~atG~~~lI~~e~l~~mk~GailvnvG~  165 (542)
                      ++||+..... ...-..++.|..++..|.
T Consensus        83 IdaT~~~~~~-e~a~~~~~aGk~VI~~~~  110 (341)
T PRK04207         83 VDATPGGVGA-KNKELYEKAGVKAIFQGG  110 (341)
T ss_pred             EECCCchhhH-HHHHHHHHCCCEEEEcCC
Confidence            9998763222 122334566777765554

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=94.77  E-value=0.043  Score=58.76  Aligned_cols=36  Identities=25%  Similarity=0.338  Sum_probs=33.6

Q ss_pred             cccCcEEEEEcCChhHHHHHHHHHhCCC-EEEEEeCC
Q psy4626          74 MFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEID  109 (542)
Q Consensus        74 ~l~GktVvViG~G~IG~~vA~~l~~~Ga-~Viv~d~d  109 (542)
                      .+.+++|+|+|+|.+|..++..|...|+ +++++|.|
T Consensus       132 ~l~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d  168 (376)
T PRK08762        132 RLLEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHD  168 (376)
T ss_pred             HHhcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            4678999999999999999999999999 89999987

>PRK08265 short chain dehydrogenase; Provisional

Probab=94.76  E-value=0.14  Score=51.23  Aligned_cols=40  Identities=23%  Similarity=0.367  Sum_probs=35.5

Q ss_pred             ccCcEEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCchhhh
Q psy4626          75 FGGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICAL  114 (542)
Q Consensus        75 l~GktVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~  114 (542)
                      +.|++++|.|. |.||+.+++.|...|++|+++++++.+..
T Consensus         4 ~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~   44 (261)
T PRK08265          4 LAGKVAIVTGGATLIGAAVARALVAAGARVAIVDIDADNGA   44 (261)
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence            57899999998 88999999999999999999999876543

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=94.74  E-value=0.11  Score=49.63  Aligned_cols=32  Identities=22%  Similarity=0.364  Sum_probs=29.7

Q ss_pred             EEEEEcCChhHHHHHHHHHhCCC-EEEEEeCCc
Q psy4626          79 QVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDP  110 (542)
Q Consensus        79 tVvViG~G~IG~~vA~~l~~~Ga-~Viv~d~dp  110 (542)
                      +|+|+|+|.+|..++..|...|. +++++|.|.
T Consensus         1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~   33 (174)
T cd01487           1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV   33 (174)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence            48999999999999999999999 799999876

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]

Probab=94.73  E-value=0.072  Score=56.63  Aligned_cols=76  Identities=21%  Similarity=0.267  Sum_probs=50.8

Q ss_pred             CcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce---ee---CHHHHhcCCcEEEEcCCCcccCCHHH
Q psy4626          77 GKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS---VV---KLNEVIRTVDIVVTATGNKNVVTREH  150 (542)
Q Consensus        77 GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~---v~---~l~e~l~~aDvVi~atG~~~lI~~e~  150 (542)
                      +++|+|+|.|-.|+.++..++.+|.+|++.|.++........+..-   ..   .+.++...||+|.---.+   ++.+.
T Consensus         1 ~~tvgIlGGGQLgrMm~~aa~~lG~~v~vLdp~~~~PA~~va~~~i~~~~dD~~al~ela~~~DViT~EfE~---V~~~a   77 (375)
T COG0026           1 MKTVGILGGGQLGRMMALAAARLGIKVIVLDPDADAPAAQVADRVIVAAYDDPEALRELAAKCDVITYEFEN---VPAEA   77 (375)
T ss_pred             CCeEEEEcCcHHHHHHHHHHHhcCCEEEEecCCCCCchhhcccceeecCCCCHHHHHHHHhhCCEEEEeecc---CCHHH
Confidence            4799999999999999999999999999999877653321111111   11   245667889988542222   33455


Q ss_pred             HhccC
Q psy4626         151 MDKMK  155 (542)
Q Consensus       151 l~~mk  155 (542)
                      ++.+.
T Consensus        78 L~~l~   82 (375)
T COG0026          78 LEKLA   82 (375)
T ss_pred             HHHHH
Confidence            55553

>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases

Probab=94.69  E-value=0.11  Score=54.30  Aligned_cols=86  Identities=17%  Similarity=0.310  Sum_probs=56.7

Q ss_pred             cEEEEEcCChhHHHHHHHHHhCCC--EEEEEeCCchhhh-hhhc--CCc------eee---CHHHHhcCCcEEEEcCCCc
Q psy4626          78 KQVVLCGYGEVGKGCCQSLKGLGC--VIYITEIDPICAL-QACM--DGF------SVV---KLNEVIRTVDIVVTATGNK  143 (542)
Q Consensus        78 ktVvViG~G~IG~~vA~~l~~~Ga--~Viv~d~dp~r~~-~A~~--~G~------~v~---~l~e~l~~aDvVi~atG~~  143 (542)
                      .+|+|+|+|.||..+|..+...|.  ++..+|+++.++. ++..  +..      .+.   +. +.+++||+||.+.|.+
T Consensus         4 ~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy-~~~~~adivvitaG~~   82 (312)
T cd05293           4 NKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDY-SVTANSKVVIVTAGAR   82 (312)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCCH-HHhCCCCEEEECCCCC
Confidence            489999999999999999887775  7999998775432 1111  111      111   23 3489999999987742


Q ss_pred             cc--CCH---------------HHHhccCCCeEEEecc
Q psy4626         144 NV--VTR---------------EHMDKMKNGCVVCNMG  164 (542)
Q Consensus       144 ~l--I~~---------------e~l~~mk~GailvnvG  164 (542)
                      ..  .++               +.+....+.+++++++
T Consensus        83 ~k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvs  120 (312)
T cd05293          83 QNEGESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVS  120 (312)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEcc
Confidence            21  111               2233345778888877

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK13303 L-aspartate dehydrogenase; Provisional

Probab=94.63  E-value=0.082  Score=53.99  Aligned_cols=84  Identities=15%  Similarity=0.229  Sum_probs=52.2

Q ss_pred             EEEEEcCChhHHHHHHHHHhC-CCEEEE-EeCCch--hhhhhhcCCce-eeCHHHHhcCCcEEEEcCCCcccCCHHHHhc
Q psy4626          79 QVVLCGYGEVGKGCCQSLKGL-GCVIYI-TEIDPI--CALQACMDGFS-VVKLNEVIRTVDIVVTATGNKNVVTREHMDK  153 (542)
Q Consensus        79 tVvViG~G~IG~~vA~~l~~~-Ga~Viv-~d~dp~--r~~~A~~~G~~-v~~l~e~l~~aDvVi~atG~~~lI~~e~l~~  153 (542)
                      +|+|+|+|.||+.+++.+... ++++.. ++.+..  +.......+.. +.+++++-..+|+|++|++..... .-....
T Consensus         3 rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~DvVve~t~~~~~~-e~~~~a   81 (265)
T PRK13303          3 KVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEHSIDAVRRALGEAVRVVSSVDALPQRPDLVVECAGHAALK-EHVVPI   81 (265)
T ss_pred             EEEEECCCHHHHHHHHHHhhCCCceEEEEEEcCCCHHHHhhhhccCCeeeCCHHHhccCCCEEEECCCHHHHH-HHHHHH
Confidence            799999999999999998765 555433 443322  11111112333 345666545699999999865332 345566


Q ss_pred             cCCCeEEEec
Q psy4626         154 MKNGCVVCNM  163 (542)
Q Consensus       154 mk~Gailvnv  163 (542)
                      ++.|.-++..
T Consensus        82 L~aGk~Vvi~   91 (265)
T PRK13303         82 LKAGIDCAVI   91 (265)
T ss_pred             HHcCCCEEEe
Confidence            7777666543

>PRK06182 short chain dehydrogenase; Validated

Probab=94.61  E-value=0.13  Score=51.64  Aligned_cols=66  Identities=17%  Similarity=0.229  Sum_probs=46.7

Q ss_pred             cCcEEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCcee-----eCHH---HHh-------cCCcEEEEc
Q psy4626          76 GGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV-----VKLN---EVI-------RTVDIVVTA  139 (542)
Q Consensus        76 ~GktVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v-----~~l~---e~l-------~~aDvVi~a  139 (542)
                      .+++++|+|. |.||+.+++.+...|++|+++++++.+.......+..+     .+.+   +++       .+.|++|.+
T Consensus         2 ~~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~l~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~~~id~li~~   81 (273)
T PRK06182          2 QKKVALVTGASSGIGKATARRLAAQGYTVYGAARRVDKMEDLASLGVHPLSLDVTDEASIKAAVDTIIAEEGRIDVLVNN   81 (273)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhCCCeEEEeeCCCHHHHHHHHHHHHHhcCCCCEEEEC
Confidence            4789999997 88999999999999999999998876654332233322     2221   222       267888887


Q ss_pred             CC
Q psy4626         140 TG  141 (542)
Q Consensus       140 tG  141 (542)
                      .|
T Consensus        82 ag   83 (273)
T PRK06182         82 AG   83 (273)
T ss_pred             CC
Confidence            66

>PLN02602 lactate dehydrogenase

Probab=94.56  E-value=0.14  Score=54.48  Aligned_cols=65  Identities=15%  Similarity=0.247  Sum_probs=46.5

Q ss_pred             cEEEEEcCChhHHHHHHHHHhCCC--EEEEEeCCchhhh-hhhc--CC------ceeeC--HHHHhcCCcEEEEcCCC
Q psy4626          78 KQVVLCGYGEVGKGCCQSLKGLGC--VIYITEIDPICAL-QACM--DG------FSVVK--LNEVIRTVDIVVTATGN  142 (542)
Q Consensus        78 ktVvViG~G~IG~~vA~~l~~~Ga--~Viv~d~dp~r~~-~A~~--~G------~~v~~--l~e~l~~aDvVi~atG~  142 (542)
                      ++|+|+|.|.||..+|..+...|.  ++..+|+++.++. ++..  +.      ..+..  --+.+++||+||.+.|.
T Consensus        38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~~~~dy~~~~daDiVVitAG~  115 (350)
T PLN02602         38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKILASTDYAVTAGSDLCIVTAGA  115 (350)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEEeCCCHHHhCCCCEEEECCCC
Confidence            699999999999999999987775  7999999886542 1111  11      12211  12447999999998874

>PRK05600 thiamine biosynthesis protein ThiF; Validated

Probab=94.53  E-value=0.06  Score=57.75  Aligned_cols=37  Identities=27%  Similarity=0.383  Sum_probs=33.9

Q ss_pred             cccCcEEEEEcCChhHHHHHHHHHhCCC-EEEEEeCCc
Q psy4626          74 MFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDP  110 (542)
Q Consensus        74 ~l~GktVvViG~G~IG~~vA~~l~~~Ga-~Viv~d~dp  110 (542)
                      .+..++|+|+|+|.+|..++..|...|. +++++|.|.
T Consensus        38 ~l~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~   75 (370)
T PRK05600         38 RLHNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDT   75 (370)
T ss_pred             HhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCE
Confidence            4678899999999999999999999998 999999874

>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.51  E-value=0.11  Score=57.18  Aligned_cols=69  Identities=22%  Similarity=0.317  Sum_probs=48.2

Q ss_pred             ccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhh-h--hhcCCceee---CHHHHhcCCcEEEEcCCCc
Q psy4626          75 FGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICAL-Q--ACMDGFSVV---KLNEVIRTVDIVVTATGNK  143 (542)
Q Consensus        75 l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~-~--A~~~G~~v~---~l~e~l~~aDvVi~atG~~  143 (542)
                      +.|++|+|+|+|.-|+++|+.|+..|++|+++|.++.... .  ....+....   ...+.+.++|+||..+|-+
T Consensus         6 ~~~~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~vV~SpgI~   80 (468)
T PRK04690          6 LEGRRVALWGWGREGRAAYRALRAHLPAQALTLFCNAVEAREVGALADAALLVETEASAQRLAAFDVVVKSPGIS   80 (468)
T ss_pred             cCCCEEEEEccchhhHHHHHHHHHcCCEEEEEcCCCcccchHHHHHhhcCEEEeCCCChHHccCCCEEEECCCCC
Confidence            4589999999999999999999999999999996543211 1  111122211   1234567789999887743

>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.49  E-value=0.11  Score=57.23  Aligned_cols=67  Identities=10%  Similarity=0.066  Sum_probs=45.3

Q ss_pred             cCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcC-Cceee--CHHHHhcCCcEEEEcCCCc
Q psy4626          76 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMD-GFSVV--KLNEVIRTVDIVVTATGNK  143 (542)
Q Consensus        76 ~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~-G~~v~--~l~e~l~~aDvVi~atG~~  143 (542)
                      .|++|+|+|+|.-|+++++.|+. |++|+++|..+......... .....  ...+.+.++|+||..+|-+
T Consensus         5 ~~~~v~v~G~G~sG~a~~~~L~~-g~~v~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vV~SPgI~   74 (454)
T PRK01368          5 TKQKIGVFGLGKTGISVYEELQN-KYDVIVYDDLKANRDIFEELYSKNAIAALSDSRWQNLDKIVLSPGIP   74 (454)
T ss_pred             CCCEEEEEeecHHHHHHHHHHhC-CCEEEEECCCCCchHHHHhhhcCceeccCChhHhhCCCEEEECCCCC
Confidence            58999999999999999999995 99999999543322111110 11111  1223456899999987743

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=94.49  E-value=0.19  Score=52.19  Aligned_cols=85  Identities=14%  Similarity=0.067  Sum_probs=56.4

Q ss_pred             cEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCcee--------------eCHHHHhcCCcEEEEcCCCc
Q psy4626          78 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV--------------VKLNEVIRTVDIVVTATGNK  143 (542)
Q Consensus        78 ktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v--------------~~l~e~l~~aDvVi~atG~~  143 (542)
                      .+++|+|.|.||..+|..|...|.+|+++.+++....  ...|...              .+..+....+|+||.|+-..
T Consensus         6 m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~~~~~--~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vilavK~~   83 (313)
T PRK06249          6 PRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSDYEAV--RENGLQVDSVHGDFHLPPVQAYRSAEDMPPCDWVLVGLKTT   83 (313)
T ss_pred             cEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCHHHH--HhCCeEEEeCCCCeeecCceEEcchhhcCCCCEEEEEecCC
Confidence            5899999999999999999999999999988774322  1222211              11122456789999997654


Q ss_pred             ccCC--HHHHhccCCCeEEEecc
Q psy4626         144 NVVT--REHMDKMKNGCVVCNMG  164 (542)
Q Consensus       144 ~lI~--~e~l~~mk~GailvnvG  164 (542)
                      .+..  ...-..+++++.++..-
T Consensus        84 ~~~~~~~~l~~~~~~~~~iv~lq  106 (313)
T PRK06249         84 ANALLAPLIPQVAAPDAKVLLLQ  106 (313)
T ss_pred             ChHhHHHHHhhhcCCCCEEEEec
Confidence            4331  12223456677777653

>PRK01713 ornithine carbamoyltransferase; Provisional

Probab=94.48  E-value=0.5  Score=50.08  Aligned_cols=124  Identities=19%  Similarity=0.151  Sum_probs=76.0

Q ss_pred             hcccccceeecCchhhhHHHHhHHHHHHHHHH--HHHhhcCccccCcEEEEEcCC--hhHHHHHHHHHhCCCEEEEEeCC
Q psy4626          34 AGKLTVPAMNVNDSVTKTKFDNLYMCRESIID--SLKRSTDVMFGGKQVVLCGYG--EVGKGCCQSLKGLGCVIYITEID  109 (542)
Q Consensus        34 ~~~L~~PV~~vn~s~~K~~fd~~~g~~~s~~~--ai~r~~~~~l~GktVvViG~G--~IG~~vA~~l~~~Ga~Viv~d~d  109 (542)
                      .....+||||..+. .-+.       -|.+.+  .+.+..+..+.|.+|+++|-+  .+....+..+..+|++|.++-+.
T Consensus       119 a~~~~vPVINa~~~-~~HP-------tQaL~Dl~Ti~e~~g~~l~gl~ia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~  190 (334)
T PRK01713        119 AEYAGVPVFNGLTD-EFHP-------TQMLADVLTMIENCDKPLSEISYVYIGDARNNMGNSLLLIGAKLGMDVRICAPK  190 (334)
T ss_pred             HHhCCCCEEECCCC-CCCh-------HHHHHHHHHHHHHcCCCcCCcEEEEECCCccCHHHHHHHHHHHcCCEEEEECCc
Confidence            34567899998553 1111       122222  233332324789999999986  46788888889999999998643


Q ss_pred             chhhh---------hhhcCCce---eeCHHHHhcCCcEEEEcC----CC-------------cccCCHHHHhcc-CCCeE
Q psy4626         110 PICAL---------QACMDGFS---VVKLNEVIRTVDIVVTAT----GN-------------KNVVTREHMDKM-KNGCV  159 (542)
Q Consensus       110 p~r~~---------~A~~~G~~---v~~l~e~l~~aDvVi~at----G~-------------~~lI~~e~l~~m-k~Gai  159 (542)
                      .....         .+...|..   ..+++++++++|||...+    |.             .-.++.+.++.. |++++
T Consensus       191 ~~~p~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvVyt~~w~sm~~~~~~~~~~~~~~~~y~v~~ell~~a~k~~ai  270 (334)
T PRK01713        191 ALLPEASLVEMCEKFAKESGARITVTDDIDKAVKGVDFVHTDVWVSMGEPLETWGERIKLLMPYQVTPELMKRTGNPKVK  270 (334)
T ss_pred             hhcCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEcceeecccchhhHHHHHHhccCCcCCHHHHhccCCCCCE
Confidence            22111         12223533   356889999999999843    21             122555667765 67777


Q ss_pred             EEeccC
Q psy4626         160 VCNMGH  165 (542)
Q Consensus       160 lvnvG~  165 (542)
                      +.-++-
T Consensus       271 vmH~lP  276 (334)
T PRK01713        271 FMHCLP  276 (334)
T ss_pred             EECCCC
Confidence            776553

>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=94.45  E-value=0.04  Score=51.17  Aligned_cols=40  Identities=25%  Similarity=0.399  Sum_probs=35.5

Q ss_pred             ehhhhcccCcEEEEccCCCCccCHhHHhcCCCCcEEEccCCCC
Q psy4626         303 KLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSN  345 (542)
Q Consensus       303 ~~~~a~~~~d~~~t~tg~~~vi~~~~~~~mk~gail~n~gh~~  345 (542)
                      .++++.++|||+|++||....|..+.   +|+|++++++|.--
T Consensus        64 ~l~~~v~~ADIVvsAtg~~~~i~~~~---ikpGa~Vidvg~~~  103 (140)
T cd05212          64 QLQSKVHDADVVVVGSPKPEKVPTEW---IKPGATVINCSPTK  103 (140)
T ss_pred             CHHHHHhhCCEEEEecCCCCccCHHH---cCCCCEEEEcCCCc
Confidence            56789999999999999999999876   79999999888654

NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional

>PRK05993 short chain dehydrogenase; Provisional

Probab=94.42  E-value=0.11  Score=52.51  Aligned_cols=40  Identities=15%  Similarity=0.284  Sum_probs=35.2

Q ss_pred             cCcEEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCchhhhh
Q psy4626          76 GGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQ  115 (542)
Q Consensus        76 ~GktVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~  115 (542)
                      .+++++|+|. |.||+.+|+.+...|++|+++++++.+...
T Consensus         3 ~~k~vlItGasggiG~~la~~l~~~G~~Vi~~~r~~~~~~~   43 (277)
T PRK05993          3 MKRSILITGCSSGIGAYCARALQSDGWRVFATCRKEEDVAA   43 (277)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHH
Confidence            3789999998 899999999999999999999988766543

>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=94.41  E-value=0.12  Score=54.53  Aligned_cols=88  Identities=15%  Similarity=0.097  Sum_probs=57.3

Q ss_pred             cEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcC---------Cc------e-eeCHHHHhcCCcEEEEcCC
Q psy4626          78 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMD---------GF------S-VVKLNEVIRTVDIVVTATG  141 (542)
Q Consensus        78 ktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~---------G~------~-v~~l~e~l~~aDvVi~atG  141 (542)
                      .+|+|+|+|.+|..+|..|...| .|+.|.+++.........         ++      . ..+++++++.+|+||.++-
T Consensus         8 mkI~IiGaGa~G~alA~~La~~g-~v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~~~aDlVilavp   86 (341)
T PRK12439          8 PKVVVLGGGSWGTTVASICARRG-PTLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRATTDFAEAANCADVVVMGVP   86 (341)
T ss_pred             CeEEEECCCHHHHHHHHHHHHCC-CEEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEEECCHHHHHhcCCEEEEEeC
Confidence            57999999999999999999988 688887777554322111         21      1 1245667889999999875


Q ss_pred             CcccCC--HHHHhccCCCeEEEeccCC
Q psy4626         142 NKNVVT--REHMDKMKNGCVVCNMGHS  166 (542)
Q Consensus       142 ~~~lI~--~e~l~~mk~GailvnvG~g  166 (542)
                      +..+-.  ++.-..+++...++++.-|
T Consensus        87 s~~~~~vl~~i~~~l~~~~~vIsl~kG  113 (341)
T PRK12439         87 SHGFRGVLTELAKELRPWVPVVSLVKG  113 (341)
T ss_pred             HHHHHHHHHHHHhhcCCCCEEEEEEeC
Confidence            433211  1222345667666655543

>CHL00194 ycf39 Ycf39; Provisional

Probab=94.39  E-value=0.14  Score=52.87  Aligned_cols=63  Identities=16%  Similarity=0.129  Sum_probs=46.5

Q ss_pred             EEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceee-----C---HHHHhcCCcEEEEcCC
Q psy4626          79 QVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVV-----K---LNEVIRTVDIVVTATG  141 (542)
Q Consensus        79 tVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~-----~---l~e~l~~aDvVi~atG  141 (542)
                      +|+|+|. |.||+.+++.|...|.+|++..+++.+.......+++++     +   +.++++++|+||.+.+
T Consensus         2 kIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~~~l~~~~v~~v~~Dl~d~~~l~~al~g~d~Vi~~~~   73 (317)
T CHL00194          2 SLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKASFLKEWGAELVYGDLSLPETLPPSFKGVTAIIDAST   73 (317)
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHhhhHhhcCCEEEECCCCCHHHHHHHHCCCCEEEECCC
Confidence            7999996 999999999999999999999887654322122344432     2   3456789999998754

>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=94.38  E-value=0.13  Score=56.35  Aligned_cols=68  Identities=19%  Similarity=0.233  Sum_probs=50.2

Q ss_pred             ccCcEEEEEcCChhHHH-HHHHHHhCCCEEEEEeCCchhhh-hhhcCCceee--CHHHHhcCCcEEEEcCCC
Q psy4626          75 FGGKQVVLCGYGEVGKG-CCQSLKGLGCVIYITEIDPICAL-QACMDGFSVV--KLNEVIRTVDIVVTATGN  142 (542)
Q Consensus        75 l~GktVvViG~G~IG~~-vA~~l~~~Ga~Viv~d~dp~r~~-~A~~~G~~v~--~l~e~l~~aDvVi~atG~  142 (542)
                      ..++++.|+|.|..|.+ +|+.|+..|++|+++|.++.... .-...|..+.  ...+.+.++|+||..+|-
T Consensus         5 ~~~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~d~vv~spgi   76 (461)
T PRK00421          5 RRIKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKESAVTQRLLELGAIIFIGHDAENIKDADVVVYSSAI   76 (461)
T ss_pred             CCCCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCChHHHHHHHCCCEEeCCCCHHHCCCCCEEEECCCC
Confidence            46789999999999999 79999999999999998664321 1123355543  223445689999998774

>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.38  E-value=0.17  Score=54.91  Aligned_cols=85  Identities=18%  Similarity=0.263  Sum_probs=56.0

Q ss_pred             ccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhh-hhhhcCCceeeC---HHHHhcCCcEEEEcCCCcccCCHHH
Q psy4626          75 FGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICA-LQACMDGFSVVK---LNEVIRTVDIVVTATGNKNVVTREH  150 (542)
Q Consensus        75 l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~-~~A~~~G~~v~~---l~e~l~~aDvVi~atG~~~lI~~e~  150 (542)
                      +.++++.|+|.|..|+.+++.|+..|.+|+++|..+... ......|+.+..   ..+.++..|+||..+|-+.- +...
T Consensus         4 ~~~~~i~v~G~G~sG~s~~~~l~~~G~~v~~~D~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~d~vv~spgi~~~-~~~~   82 (438)
T PRK03806          4 YQGKKVVIIGLGLTGLSCVDFFLARGVTPRVIDTRITPPGLDKLPENVERHTGSLNDEWLLAADLIVASPGIALA-HPSL   82 (438)
T ss_pred             cCCCEEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCCCchhHHHHhcCCEEEeCCCCHHHhcCCCEEEECCCCCCC-CHHH
Confidence            357899999999999999999999999999999765422 111223554421   22345678999988775433 3333


Q ss_pred             HhccCCCeEE
Q psy4626         151 MDKMKNGCVV  160 (542)
Q Consensus       151 l~~mk~Gail  160 (542)
                      .+.-+.|..+
T Consensus        83 ~~a~~~g~~v   92 (438)
T PRK03806         83 SAAADAGIEI   92 (438)
T ss_pred             HHHHHCCCeE
Confidence            3333455444

>KOG0089|consensus

Probab=94.32  E-value=0.081  Score=53.94  Aligned_cols=104  Identities=26%  Similarity=0.336  Sum_probs=72.0

Q ss_pred             HHHHHHHHHHHhhcCccccCcEEEEEcCC-hhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCCcEE
Q psy4626          58 MCRESIIDSLKRSTDVMFGGKQVVLCGYG-EVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIV  136 (542)
Q Consensus        58 g~~~s~~~ai~r~~~~~l~GktVvViG~G-~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~aDvV  136 (542)
                      .|-.++|+-+.| ++..+.||+++|+|-- .+|+-+|..|..-|+++.=.|..-..   ....+...-.++...+.+|++
T Consensus       148 cTP~gv~eiL~r-~gI~~~GKn~VVigRS~iVg~P~A~LL~~dG~~~~~~~datVt---i~hr~t~~~~lk~ht~~adiv  223 (309)
T KOG0089|consen  148 CTPLGVVEILER-TGIETYGKNAVVIGRSKIVGMPLALLLHNDGAHVYSVDDATVT---IFHRYTSKPQLKHHTRDADIV  223 (309)
T ss_pred             CchHHHHHHHHH-hCCeecCceEEEEcccccccchHHHHHhhcCCcccccCcceEE---EEEcCCCchhHHHHHHhccee
Confidence            344567775555 4678999999999986 47999999999998876655421100   000000011124456889999


Q ss_pred             EEcCCCcccCCHHHHhccCCCeEEEeccCCCc
Q psy4626         137 VTATGNKNVVTREHMDKMKNGCVVCNMGHSNT  168 (542)
Q Consensus       137 i~atG~~~lI~~e~l~~mk~GailvnvG~g~~  168 (542)
                      |.+.|-+++|+.   +.+|+|+.++++|...+
T Consensus       224 i~a~g~p~li~~---d~Ik~Ga~vidvgin~v  252 (309)
T KOG0089|consen  224 ISAVGIPNLITS---DMIKPGAAVIDVGINRV  252 (309)
T ss_pred             ehhcCCCccccc---ceeecCceeEecCCCcc
Confidence            999999999975   45799999999996543

>PRK08300 acetaldehyde dehydrogenase; Validated

Probab=94.26  E-value=0.14  Score=53.54  Aligned_cols=87  Identities=20%  Similarity=0.229  Sum_probs=58.3

Q ss_pred             CcEEEEEcCChhHHHHHHHHH-hCCCEEE-EEeCCchhh--hhhhcCCcee--eCHHHHh-----cCCcEEEEcCCCccc
Q psy4626          77 GKQVVLCGYGEVGKGCCQSLK-GLGCVIY-ITEIDPICA--LQACMDGFSV--VKLNEVI-----RTVDIVVTATGNKNV  145 (542)
Q Consensus        77 GktVvViG~G~IG~~vA~~l~-~~Ga~Vi-v~d~dp~r~--~~A~~~G~~v--~~l~e~l-----~~aDvVi~atG~~~l  145 (542)
                      .-+++|||.|.||...+..+. .-++++. ++|+||...  ..|...|...  .+.++++     .+.|+|+++|++..-
T Consensus         4 klrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~es~gla~A~~~Gi~~~~~~ie~LL~~~~~~dIDiVf~AT~a~~H   83 (302)
T PRK08300          4 KLKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPESDGLARARRLGVATSAEGIDGLLAMPEFDDIDIVFDATSAGAH   83 (302)
T ss_pred             CCeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChhhHHHHHHHHcCCCcccCCHHHHHhCcCCCCCCEEEECCCHHHH
Confidence            357999999999988665555 4467655 578888632  3466677654  3567776     468999999876422


Q ss_pred             CCHHHHhccCCCeEEEecc
Q psy4626         146 VTREHMDKMKNGCVVCNMG  164 (542)
Q Consensus       146 I~~e~l~~mk~GailvnvG  164 (542)
                      . .......+.|+.++.-.
T Consensus        84 ~-e~a~~a~eaGk~VID~s  101 (302)
T PRK08300         84 V-RHAAKLREAGIRAIDLT  101 (302)
T ss_pred             H-HHHHHHHHcCCeEEECC
Confidence            2 22344567888777544

>cd08271 MDR5 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=94.24  E-value=0.71  Score=46.66  Aligned_cols=89  Identities=19%  Similarity=0.191  Sum_probs=64.1

Q ss_pred             cccCcEEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce-eeC-----HHH----Hh--cCCcEEEEcC
Q psy4626          74 MFGGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVK-----LNE----VI--RTVDIVVTAT  140 (542)
Q Consensus        74 ~l~GktVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~-v~~-----l~e----~l--~~aDvVi~at  140 (542)
                      ...|.+++|.|. |.+|..+++.++..|++|++.- ++.+...+...|.. +.+     ..+    ..  ++.|+++++.
T Consensus       139 ~~~g~~vlI~g~~~~ig~~~~~~a~~~g~~v~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~  217 (325)
T cd08271         139 IEAGRTILITGGAGGVGSFAVQLAKRAGLRVITTC-SKRNFEYVKSLGADHVIDYNDEDVCERIKEITGGRGVDAVLDTV  217 (325)
T ss_pred             CCCCCEEEEECCccHHHHHHHHHHHHcCCEEEEEE-cHHHHHHHHHcCCcEEecCCCccHHHHHHHHcCCCCCcEEEECC
Confidence            357899999999 6799999999999999988765 55554444444543 211     111    12  3699999998


Q ss_pred             CCcccCCHHHHhccCCCeEEEeccC
Q psy4626         141 GNKNVVTREHMDKMKNGCVVCNMGH  165 (542)
Q Consensus       141 G~~~lI~~e~l~~mk~GailvnvG~  165 (542)
                      |... . .+.++.+++.+.++..|.
T Consensus       218 ~~~~-~-~~~~~~l~~~G~~v~~~~  240 (325)
T cd08271         218 GGET-A-AALAPTLAFNGHLVCIQG  240 (325)
T ss_pred             CcHh-H-HHHHHhhccCCEEEEEcC
Confidence            8754 3 357899999999988763

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=94.23  E-value=0.19  Score=48.95  Aligned_cols=39  Identities=18%  Similarity=0.193  Sum_probs=35.0

Q ss_pred             ccCcEEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCchhh
Q psy4626          75 FGGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICA  113 (542)
Q Consensus        75 l~GktVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp~r~  113 (542)
                      +.|++++|.|. |.||..+++.+...|++|+++++++.+.
T Consensus         3 ~~~~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~~~~   42 (238)
T PRK05786          3 LKGKKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNENKL   42 (238)
T ss_pred             cCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence            56899999998 6799999999999999999999887654

>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=94.21  E-value=0.18  Score=52.69  Aligned_cols=86  Identities=10%  Similarity=0.127  Sum_probs=55.6

Q ss_pred             EEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhc--------CCc------e-eeCHHHHh-cCCcEEEEcCCC
Q psy4626          79 QVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACM--------DGF------S-VVKLNEVI-RTVDIVVTATGN  142 (542)
Q Consensus        79 tVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~--------~G~------~-v~~l~e~l-~~aDvVi~atG~  142 (542)
                      ++.|+|+|.+|..++..|...|.+|.++++++.....-..        .+.      . ..++++.+ ..+|++|.++-+
T Consensus         2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Dliiiavks   81 (326)
T PRK14620          2 KISILGAGSFGTAIAIALSSKKISVNLWGRNHTTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSDNATCIILAVPT   81 (326)
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhCCCCEEEEEeCH
Confidence            5899999999999999999999999999988753321111        011      1 12345555 589999998755


Q ss_pred             cccCCHHHHh-----ccCCCeEEEeccCC
Q psy4626         143 KNVVTREHMD-----KMKNGCVVCNMGHS  166 (542)
Q Consensus       143 ~~lI~~e~l~-----~mk~GailvnvG~g  166 (542)
                      ..+-  +.++     .+++...++...-|
T Consensus        82 ~~~~--~~l~~l~~~~l~~~~~vv~~~nG  108 (326)
T PRK14620         82 QQLR--TICQQLQDCHLKKNTPILICSKG  108 (326)
T ss_pred             HHHH--HHHHHHHHhcCCCCCEEEEEEcC
Confidence            4332  2333     34455555544433

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=94.17  E-value=0.1  Score=52.95  Aligned_cols=89  Identities=18%  Similarity=0.335  Sum_probs=59.4

Q ss_pred             ccCcEEEEEcCChhHHHHHHHHHhCCC--EEEEEeCCchhhhhhhc----CCce---e--eCHHHH-h--cCCcEEEEcC
Q psy4626          75 FGGKQVVLCGYGEVGKGCCQSLKGLGC--VIYITEIDPICALQACM----DGFS---V--VKLNEV-I--RTVDIVVTAT  140 (542)
Q Consensus        75 l~GktVvViG~G~IG~~vA~~l~~~Ga--~Viv~d~dp~r~~~A~~----~G~~---v--~~l~e~-l--~~aDvVi~at  140 (542)
                      ..|++|+.+|+|. |..+...++..|.  +|+.+|+++.....|..    .|+.   +  .++++. +  ...|+|+...
T Consensus        76 ~~g~~VLDiG~G~-G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~  154 (272)
T PRK11873         76 KPGETVLDLGSGG-GFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISNC  154 (272)
T ss_pred             CCCCEEEEeCCCC-CHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEcC
Confidence            4799999999999 9877666666664  79999999977665543    2322   1  223322 1  2578888642


Q ss_pred             ------CCcccCCHHHHhccCCCeEEEeccC
Q psy4626         141 ------GNKNVVTREHMDKMKNGCVVCNMGH  165 (542)
Q Consensus       141 ------G~~~lI~~e~l~~mk~GailvnvG~  165 (542)
                            ....++ .+.++.||+|++++..+.
T Consensus       155 v~~~~~d~~~~l-~~~~r~LkpGG~l~i~~~  184 (272)
T PRK11873        155 VINLSPDKERVF-KEAFRVLKPGGRFAISDV  184 (272)
T ss_pred             cccCCCCHHHHH-HHHHHHcCCCcEEEEEEe
Confidence                  122334 477888999999987553

>PRK06392 homoserine dehydrogenase; Provisional

Probab=94.15  E-value=0.17  Score=53.36  Aligned_cols=88  Identities=17%  Similarity=0.305  Sum_probs=52.0

Q ss_pred             EEEEEcCChhHHHHHHHHHh--------CCCEEE-EEeCCchhh----------hhhhcCC----ce--eeCHHHHh-cC
Q psy4626          79 QVVLCGYGEVGKGCCQSLKG--------LGCVIY-ITEIDPICA----------LQACMDG----FS--VVKLNEVI-RT  132 (542)
Q Consensus        79 tVvViG~G~IG~~vA~~l~~--------~Ga~Vi-v~d~dp~r~----------~~A~~~G----~~--v~~l~e~l-~~  132 (542)
                      +|+|+|+|.||+.+++.+..        .+.+|+ ++|.+....          ......|    +.  ..++++++ ..
T Consensus         2 rVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~g~l~~~~Gldl~~l~~~~~~g~l~~~~~~~~~~~~ll~~~   81 (326)
T PRK06392          2 RISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSKLSYYNERGLDIGKIISYKEKGRLEEIDYEKIKFDEIFEIK   81 (326)
T ss_pred             EEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECCCcccCCcCCChHHHHHHHhcCccccCCCCcCCHHHHhcCC
Confidence            69999999999999999876        455644 456543110          0001101    11  12455554 57


Q ss_pred             CcEEEEcCCCcc-cCC--HHHHhccCCCeEEEeccCC
Q psy4626         133 VDIVVTATGNKN-VVT--REHMDKMKNGCVVCNMGHS  166 (542)
Q Consensus       133 aDvVi~atG~~~-lI~--~e~l~~mk~GailvnvG~g  166 (542)
                      +|++|+|+++.. -..  .-..+.|+.|.-++...-+
T Consensus        82 ~DVvVE~t~~~~~g~~~~~~~~~aL~~G~hVVTaNKg  118 (326)
T PRK06392         82 PDVIVDVTPASKDGIREKNLYINAFEHGIDVVTANKS  118 (326)
T ss_pred             CCEEEECCCCCCcCchHHHHHHHHHHCCCEEEcCCHH
Confidence            899999986421 111  1225667888888865543

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=94.13  E-value=0.16  Score=55.91  Aligned_cols=36  Identities=25%  Similarity=0.350  Sum_probs=33.2

Q ss_pred             ccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCc
Q psy4626          75 FGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDP  110 (542)
Q Consensus        75 l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp  110 (542)
                      ..|++|+|||.|+.|..+|..|+..|.+|+++|..+
T Consensus       141 ~~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~  176 (471)
T PRK12810        141 RTGKKVAVVGSGPAGLAAADQLARAGHKVTVFERAD  176 (471)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCC
Confidence            468899999999999999999999999999999765

>PLN00106 malate dehydrogenase

Probab=94.13  E-value=0.23  Score=52.35  Aligned_cols=67  Identities=19%  Similarity=0.231  Sum_probs=47.3

Q ss_pred             cCcEEEEEcC-ChhHHHHHHHHHhCCC--EEEEEeCCchhhhhhhc--C-C--cee---eC---HHHHhcCCcEEEEcCC
Q psy4626          76 GGKQVVLCGY-GEVGKGCCQSLKGLGC--VIYITEIDPICALQACM--D-G--FSV---VK---LNEVIRTVDIVVTATG  141 (542)
Q Consensus        76 ~GktVvViG~-G~IG~~vA~~l~~~Ga--~Viv~d~dp~r~~~A~~--~-G--~~v---~~---l~e~l~~aDvVi~atG  141 (542)
                      ..++|+|+|+ |.||..+|..|...|.  ++..+|+++.+ .++..  + .  ..+   ..   ..+.++++|+||.+.|
T Consensus        17 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~~-g~a~Dl~~~~~~~~i~~~~~~~d~~~~l~~aDiVVitAG   95 (323)
T PLN00106         17 PGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTP-GVAADVSHINTPAQVRGFLGDDQLGDALKGADLVIIPAG   95 (323)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCCC-eeEchhhhCCcCceEEEEeCCCCHHHHcCCCCEEEEeCC
Confidence            4579999999 9999999999986665  89999998722 11211  0 1  111   12   2567899999999887


Q ss_pred             Cc
Q psy4626         142 NK  143 (542)
Q Consensus       142 ~~  143 (542)
                      .+
T Consensus        96 ~~   97 (323)
T PLN00106         96 VP   97 (323)
T ss_pred             CC
Confidence            53

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=94.11  E-value=0.07  Score=53.13  Aligned_cols=37  Identities=19%  Similarity=0.336  Sum_probs=33.5

Q ss_pred             cccCcEEEEEcCChhHHHHHHHHHhCCC-EEEEEeCCc
Q psy4626          74 MFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDP  110 (542)
Q Consensus        74 ~l~GktVvViG~G~IG~~vA~~l~~~Ga-~Viv~d~dp  110 (542)
                      .+..++|+|+|+|.+|..+|..|...|. +++++|.|.
T Consensus        18 ~L~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~   55 (228)
T cd00757          18 KLKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDV   55 (228)
T ss_pred             HHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence            4678899999999999999999999999 899998765

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>PRK06349 homoserine dehydrogenase; Provisional

Probab=94.11  E-value=0.12  Score=56.47  Aligned_cols=85  Identities=21%  Similarity=0.228  Sum_probs=54.0

Q ss_pred             EEEEEcCChhHHHHHHHHHhC----------CCE-EEEEeCCchhhhhhhcCCce-eeCHHHHh--cCCcEEEEcCCCcc
Q psy4626          79 QVVLCGYGEVGKGCCQSLKGL----------GCV-IYITEIDPICALQACMDGFS-VVKLNEVI--RTVDIVVTATGNKN  144 (542)
Q Consensus        79 tVvViG~G~IG~~vA~~l~~~----------Ga~-Viv~d~dp~r~~~A~~~G~~-v~~l~e~l--~~aDvVi~atG~~~  144 (542)
                      +|+|+|+|.||+++++.+...          +.+ +.++++++.+.......+.. +.+.++++  .+.|+|++++|...
T Consensus         5 ~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~~~~~~~~~~~~~~d~~~ll~d~~iDvVve~tg~~~   84 (426)
T PRK06349          5 KVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEKDRGVDLPGILLTTDPEELVNDPDIDIVVELMGGIE   84 (426)
T ss_pred             EEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhhccCCCCcccceeCCHHHHhhCCCCCEEEECCCCch
Confidence            799999999999998877432          344 44568777654321112222 34677877  46899999987532


Q ss_pred             cCCHHHHhccCCCeEEEec
Q psy4626         145 VVTREHMDKMKNGCVVCNM  163 (542)
Q Consensus       145 lI~~e~l~~mk~Gailvnv  163 (542)
                      .-..-..+.|+.|.-++..
T Consensus        85 ~~~~~~~~aL~~GkhVVta  103 (426)
T PRK06349         85 PARELILKALEAGKHVVTA  103 (426)
T ss_pred             HHHHHHHHHHHCCCeEEEc
Confidence            2112234677888777653

>PRK12742 oxidoreductase; Provisional

Probab=94.11  E-value=0.29  Score=47.64  Aligned_cols=34  Identities=24%  Similarity=0.343  Sum_probs=30.4

Q ss_pred             ccCcEEEEEcC-ChhHHHHHHHHHhCCCEEEEEeC
Q psy4626          75 FGGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEI  108 (542)
Q Consensus        75 l~GktVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~  108 (542)
                      +.|++++|.|. |.||+.+++.+...|++|++..+
T Consensus         4 ~~~k~vlItGasggIG~~~a~~l~~~G~~v~~~~~   38 (237)
T PRK12742          4 FTGKKVLVLGGSRGIGAAIVRRFVTDGANVRFTYA   38 (237)
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEecC
Confidence            56899999997 89999999999999999988754

>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.09  E-value=0.21  Score=54.37  Aligned_cols=69  Identities=17%  Similarity=0.302  Sum_probs=49.6

Q ss_pred             ccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhh-hhhh---cCCceee--C-HHHHhcCCcEEEEcCCCc
Q psy4626          75 FGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICA-LQAC---MDGFSVV--K-LNEVIRTVDIVVTATGNK  143 (542)
Q Consensus        75 l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~-~~A~---~~G~~v~--~-l~e~l~~aDvVi~atG~~  143 (542)
                      +.+++++|+|.|.+|..+|+.|+..|++|.++|.++... ....   ..|+.+.  . .+..+.++|+||..+|-+
T Consensus         3 ~~~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~~~~~~~l~~~~~gi~~~~g~~~~~~~~~~d~vv~spgi~   78 (445)
T PRK04308          3 FQNKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELKPERVAQIGKMFDGLVFYTGRLKDALDNGFDILALSPGIS   78 (445)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCchhHHHHhhccCCcEEEeCCCCHHHHhCCCEEEECCCCC
Confidence            458899999999999999999999999999999766431 1111   1355432  1 223346789999988754

>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional

Probab=94.07  E-value=0.17  Score=57.20  Aligned_cols=69  Identities=17%  Similarity=0.239  Sum_probs=50.2

Q ss_pred             cccCcEEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhc---------CC------cee-----eCH---HHH
Q psy4626          74 MFGGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACM---------DG------FSV-----VKL---NEV  129 (542)
Q Consensus        74 ~l~GktVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~---------~G------~~v-----~~l---~e~  129 (542)
                      ...|++++|+|. |.||+.+++.|...|.+|+++.+++.+......         .|      +.+     .+.   .++
T Consensus        77 ~~~gKvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~a  156 (576)
T PLN03209         77 TKDEDLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIGPA  156 (576)
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHHHH
Confidence            357899999998 899999999999999999999988766532110         11      111     122   235


Q ss_pred             hcCCcEEEEcCCC
Q psy4626         130 IRTVDIVVTATGN  142 (542)
Q Consensus       130 l~~aDvVi~atG~  142 (542)
                      +.++|+||.+.|.
T Consensus       157 LggiDiVVn~AG~  169 (576)
T PLN03209        157 LGNASVVICCIGA  169 (576)
T ss_pred             hcCCCEEEEcccc
Confidence            6789999998764

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=94.06  E-value=0.082  Score=54.30  Aligned_cols=37  Identities=24%  Similarity=0.524  Sum_probs=33.6

Q ss_pred             cccCcEEEEEcCChhHHHHHHHHHhCCC-EEEEEeCCc
Q psy4626          74 MFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDP  110 (542)
Q Consensus        74 ~l~GktVvViG~G~IG~~vA~~l~~~Ga-~Viv~d~dp  110 (542)
                      .+.+++|+|+|.|.+|..+|..|...|. +++++|.|.
T Consensus        27 kL~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~   64 (268)
T PRK15116         27 LFADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDD   64 (268)
T ss_pred             HhcCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCE
Confidence            4678899999999999999999999996 999999874

>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.01  E-value=0.22  Score=54.34  Aligned_cols=69  Identities=10%  Similarity=0.076  Sum_probs=49.2

Q ss_pred             ccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhh--hhhc--CCceee---CHHHHhcCCcEEEEcCCCc
Q psy4626          75 FGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICAL--QACM--DGFSVV---KLNEVIRTVDIVVTATGNK  143 (542)
Q Consensus        75 l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~--~A~~--~G~~v~---~l~e~l~~aDvVi~atG~~  143 (542)
                      ....+++|+|.|..|..+|+.|+..|++|+++|..+....  .-..  .|..+.   ...+.+.++|+||..+|-+
T Consensus         4 ~~~~~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~d~vV~sp~i~   79 (448)
T PRK03803          4 QSDGLHIVVGLGKTGLSVVRFLARQGIPFAVMDSREQPPGLDTLAREFPDVELRCGGFDCELLVQASEIIISPGLA   79 (448)
T ss_pred             ccCCeEEEEeecHhHHHHHHHHHhCCCeEEEEeCCCCchhHHHHHhhcCCcEEEeCCCChHHhcCCCEEEECCCCC
Confidence            3466899999999999999999999999999997653211  1111  255442   1234467889998887643

>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2

Probab=93.99  E-value=0.57  Score=44.16  Aligned_cols=98  Identities=17%  Similarity=0.226  Sum_probs=66.9

Q ss_pred             cCcEEEEEc--CChhHHHHHHHHHhCCCEEEEEeCCchh--h---------hhhhcCCc--e-eeCHHHHhcCCcEEEEc
Q psy4626          76 GGKQVVLCG--YGEVGKGCCQSLKGLGCVIYITEIDPIC--A---------LQACMDGF--S-VVKLNEVIRTVDIVVTA  139 (542)
Q Consensus        76 ~GktVvViG--~G~IG~~vA~~l~~~Ga~Viv~d~dp~r--~---------~~A~~~G~--~-v~~l~e~l~~aDvVi~a  139 (542)
                      .|.+|+++|  .+++....+..+..+|+++.++-+...+  .         ..+...|.  . ..+++++++++|+|++.
T Consensus         1 ~gl~i~~vGD~~~rv~~Sl~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~e~l~~aDvvy~~   80 (158)
T PF00185_consen    1 KGLKIAYVGDGHNRVAHSLIELLAKFGMEVVLIAPEGLRYPPDPEVLEKAKKNAKKNGGKITITDDIEEALKGADVVYTD   80 (158)
T ss_dssp             TTEEEEEESSTTSHHHHHHHHHHHHTTSEEEEESSGGGGGSHHHHHHHHHHHHHHHHTTEEEEESSHHHHHTT-SEEEEE
T ss_pred             CCCEEEEECCCCChHHHHHHHHHHHcCCEEEEECCCcccCCCCHHHHHHHHHHHHHhCCCeEEEeCHHHhcCCCCEEEEc
Confidence            388999999  3799999999999999998888543321  1         01122232  2 34688999999999985


Q ss_pred             CCC---------------cccCCHHHHhccCCCeEEEeccCC--CcccChH
Q psy4626         140 TGN---------------KNVVTREHMDKMKNGCVVCNMGHS--NTEIDVN  173 (542)
Q Consensus       140 tG~---------------~~lI~~e~l~~mk~GailvnvG~g--~~eid~~  173 (542)
                      .-.               +-.++.+.++.+++++++.-.+-.  +.|++-+
T Consensus        81 ~~~s~~~~e~~~~~~~~~~y~v~~~~m~~a~~~~i~mH~LP~~R~~Ev~~e  131 (158)
T PF00185_consen   81 RWQSMGDKERFKRLEKFKPYQVTEELMERAKPDAIFMHPLPANRGEEVSDE  131 (158)
T ss_dssp             SSSCTTSGGHHHHHHHHGGGSBSHHHHHTSSTT-EEEESSS--BTTSBEHH
T ss_pred             CcccccchHHHHHHHHhcCCccCHHHHHhcCCCcEEEeCCCCCCCceeCHh
Confidence            421               145778889999999999887752  3455444

1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....

>PRK05597 molybdopterin biosynthesis protein MoeB; Validated

Probab=93.95  E-value=0.091  Score=55.99  Aligned_cols=37  Identities=27%  Similarity=0.328  Sum_probs=34.0

Q ss_pred             cccCcEEEEEcCChhHHHHHHHHHhCCC-EEEEEeCCc
Q psy4626          74 MFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDP  110 (542)
Q Consensus        74 ~l~GktVvViG~G~IG~~vA~~l~~~Ga-~Viv~d~dp  110 (542)
                      .+..++|+|+|+|.+|..++..|...|. +++++|.|.
T Consensus        25 ~L~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~   62 (355)
T PRK05597         25 SLFDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDT   62 (355)
T ss_pred             HHhCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence            4678999999999999999999999998 899998875

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=93.93  E-value=0.14  Score=61.24  Aligned_cols=36  Identities=17%  Similarity=0.030  Sum_probs=33.1

Q ss_pred             ccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCc
Q psy4626          75 FGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDP  110 (542)
Q Consensus        75 l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp  110 (542)
                      ..|++|+|||+||-|+.+|..|+..|.+|+++|..+
T Consensus       304 ~~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~  339 (944)
T PRK12779        304 AVKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFH  339 (944)
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCC
Confidence            359999999999999999999999999999999654

>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional

Probab=93.87  E-value=0.2  Score=53.14  Aligned_cols=80  Identities=14%  Similarity=0.131  Sum_probs=58.2

Q ss_pred             hHHHHHHHHHhCCCEEEEEeCCchh-----hhhhhcCCcee-eCHHHHhcCCcEEEEcCCCcccCC---HHHHhccCCCe
Q psy4626          88 VGKGCCQSLKGLGCVIYITEIDPIC-----ALQACMDGFSV-VKLNEVIRTVDIVVTATGNKNVVT---REHMDKMKNGC  158 (542)
Q Consensus        88 IG~~vA~~l~~~Ga~Viv~d~dp~r-----~~~A~~~G~~v-~~l~e~l~~aDvVi~atG~~~lI~---~e~l~~mk~Ga  158 (542)
                      -|..+|..|...|.+|+++|+++.+     .......|..+ .+..++++++|+||.++.....+.   ......++++.
T Consensus        31 gG~~MA~~La~aG~~V~v~Dr~~~~l~~~~~~~l~~~Gi~~asd~~eaa~~ADvVIlaVP~~~~v~~Vl~~L~~~L~~g~  110 (342)
T PRK12557         31 GGSRMAIEFAEAGHDVVLAEPNRSILSEELWKKVEDAGVKVVSDDAEAAKHGEIHILFTPFGKKTVEIAKNILPHLPENA  110 (342)
T ss_pred             CHHHHHHHHHhCCCeEEEEECCHHHhhHHHHHHHHHCCCEEeCCHHHHHhCCCEEEEECCCcHHHHHHHHHHHhhCCCCC
Confidence            3688999999999999999998863     22344567664 356677899999999875433111   23456678999


Q ss_pred             EEEeccCCC
Q psy4626         159 VVCNMGHSN  167 (542)
Q Consensus       159 ilvnvG~g~  167 (542)
                      ++++++.+.
T Consensus       111 IVId~ST~~  119 (342)
T PRK12557        111 VICNTCTVS  119 (342)
T ss_pred             EEEEecCCC
Confidence            999988775

>cd08247 AST1_like AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast

Probab=93.83  E-value=0.43  Score=49.68  Aligned_cols=89  Identities=16%  Similarity=0.111  Sum_probs=60.7

Q ss_pred             cccCcEEEEEcC-ChhHHHHHHHHHhC-CC-EEEEEeCCchhhhhhhcCCce-eeC---------HHHH------hcCCc
Q psy4626          74 MFGGKQVVLCGY-GEVGKGCCQSLKGL-GC-VIYITEIDPICALQACMDGFS-VVK---------LNEV------IRTVD  134 (542)
Q Consensus        74 ~l~GktVvViG~-G~IG~~vA~~l~~~-Ga-~Viv~d~dp~r~~~A~~~G~~-v~~---------l~e~------l~~aD  134 (542)
                      ...|.+|+|.|. |.+|..+++.++.+ |. .|+++. ++.+...+...|.. +++         ..+.      -++.|
T Consensus       149 ~~~g~~vlI~ga~~~vg~~~~~~a~~~~~~~~v~~~~-~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~d  227 (352)
T cd08247         149 LGPDSKVLVLGGSTSVGRFAIQLAKNHYNIGTVVGTC-SSRSAELNKKLGADHFIDYDAHSGVKLLKPVLENVKGQGKFD  227 (352)
T ss_pred             cCCCCeEEEECCCchHHHHHHHHHHhcCCcceEEEEe-ChhHHHHHHHhCCCEEEecCCCcccchHHHHHHhhcCCCCce
Confidence            347999999999 48999999999987 55 566665 34333344455542 221         1111      14799


Q ss_pred             EEEEcCCCcccCCHHHHhccC---CCeEEEecc
Q psy4626         135 IVVTATGNKNVVTREHMDKMK---NGCVVCNMG  164 (542)
Q Consensus       135 vVi~atG~~~lI~~e~l~~mk---~GailvnvG  164 (542)
                      +++++.|....+. +.++.++   +++.+++.+
T Consensus       228 ~vl~~~g~~~~~~-~~~~~l~~~~~~G~~v~~~  259 (352)
T cd08247         228 LILDCVGGYDLFP-HINSILKPKSKNGHYVTIV  259 (352)
T ss_pred             EEEECCCCHHHHH-HHHHHhCccCCCCEEEEEe
Confidence            9999988754553 6778888   999888764

This group contains members identified in targeting of yeast membrane proteins ATPase. AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast, identified as a multicopy suppressor of pma1 mutants which cause temperature sensitive growth arrest due to the inability of ATPase to target to the cell surface. This family is homologous to the medium chain family of dehydrogenases and reductases. Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-termi

>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1

Probab=93.81  E-value=0.13  Score=52.32  Aligned_cols=75  Identities=24%  Similarity=0.285  Sum_probs=50.8

Q ss_pred             HHHHHHhCC--CEEEEEeCCchhhhhhhcCCce--eeCHHHHhcCCcEEEEcCCCc---ccCCHHHHhccCCCeEEEecc
Q psy4626          92 CCQSLKGLG--CVIYITEIDPICALQACMDGFS--VVKLNEVIRTVDIVVTATGNK---NVVTREHMDKMKNGCVVCNMG  164 (542)
Q Consensus        92 vA~~l~~~G--a~Viv~d~dp~r~~~A~~~G~~--v~~l~e~l~~aDvVi~atG~~---~lI~~e~l~~mk~GailvnvG  164 (542)
                      +|++|+..|  .+|+.+|+++.....|...|+-  ..+..+.++++|+||.|+...   .++ .+....+++|++++.+|
T Consensus         1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g~~~~~~~~~~~~~~~DlvvlavP~~~~~~~l-~~~~~~~~~~~iv~Dv~   79 (258)
T PF02153_consen    1 IALALRKAGPDVEVYGYDRDPETLEAALELGIIDEASTDIEAVEDADLVVLAVPVSAIEDVL-EEIAPYLKPGAIVTDVG   79 (258)
T ss_dssp             HHHHHHHTTTTSEEEEE-SSHHHHHHHHHTTSSSEEESHHHHGGCCSEEEE-S-HHHHHHHH-HHHHCGS-TTSEEEE--
T ss_pred             ChHHHHhCCCCeEEEEEeCCHHHHHHHHHCCCeeeccCCHhHhcCCCEEEEcCCHHHHHHHH-HHhhhhcCCCcEEEEeC
Confidence            477888888  6999999999988888777764  233356789999999998522   233 24445688999999999


Q ss_pred             CCC
Q psy4626         165 HSN  167 (542)
Q Consensus       165 ~g~  167 (542)
                      +-.
T Consensus        80 SvK   82 (258)
T PF02153_consen   80 SVK   82 (258)
T ss_dssp             S-C
T ss_pred             CCC
Confidence            865

3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.

>PLN02342 ornithine carbamoyltransferase

Probab=93.79  E-value=1.1  Score=47.81  Aligned_cols=124  Identities=16%  Similarity=0.108  Sum_probs=78.5

Q ss_pred             hcccccceeecCchhhhHHHHhHHHHHHHHHH--HHHhhcCccccCcEEEEEcCC-hhHHHHHHHHHhCCCEEEEEeCCc
Q psy4626          34 AGKLTVPAMNVNDSVTKTKFDNLYMCRESIID--SLKRSTDVMFGGKQVVLCGYG-EVGKGCCQSLKGLGCVIYITEIDP  110 (542)
Q Consensus        34 ~~~L~~PV~~vn~s~~K~~fd~~~g~~~s~~~--ai~r~~~~~l~GktVvViG~G-~IG~~vA~~l~~~Ga~Viv~d~dp  110 (542)
                      .....+||||..+.. -+.       -|++.+  .+.+..+ .+.|.+|+++|-+ ++-...+..+..+|++|.++-+..
T Consensus       158 a~~~~vPVINA~~~~-~HP-------tQaLaDl~Ti~e~~G-~l~glkva~vGD~~nva~Sli~~~~~~G~~v~~~~P~~  228 (348)
T PLN02342        158 AEYSSVPVINGLTDY-NHP-------CQIMADALTIIEHIG-RLEGTKVVYVGDGNNIVHSWLLLAAVLPFHFVCACPKG  228 (348)
T ss_pred             HHhCCCCEEECCCCC-CCh-------HHHHHHHHHHHHHhC-CcCCCEEEEECCCchhHHHHHHHHHHcCCEEEEECCcc
Confidence            345678999886542 121       122222  2333223 4789999999984 466777888889999999985433


Q ss_pred             hhh-----hhhhcCC---ce-eeCHHHHhcCCcEEEEcC----C------------CcccCCHHHHhccCCCeEEEeccC
Q psy4626         111 ICA-----LQACMDG---FS-VVKLNEVIRTVDIVVTAT----G------------NKNVVTREHMDKMKNGCVVCNMGH  165 (542)
Q Consensus       111 ~r~-----~~A~~~G---~~-v~~l~e~l~~aDvVi~at----G------------~~~lI~~e~l~~mk~GailvnvG~  165 (542)
                      ...     ..+...|   +. ..+++++++++|||...+    |            ..-.++.+.++.+|+++++.-++-
T Consensus       229 ~~~~~~~~~~a~~~g~~~~~~~~d~~eav~~aDVvy~~~W~s~~~~e~~~~~~~~~~~y~vt~ell~~ak~~aivMHpLP  308 (348)
T PLN02342        229 YEPDAKTVEKARAAGISKIEITNDPAEAVKGADVVYTDVWASMGQKEEAEKRKKAFQGFQVNEALMKLAGPQAYFMHCLP  308 (348)
T ss_pred             cccCHHHHHHHHHhCCCcEEEEcCHHHHhCCCCEEEECCccccccchhhHHHHHhccCCccCHHHHhccCCCcEEeCCCC
Confidence            221     1122223   33 356789999999999863    2            124466777888888887776664


Q ss_pred             C
Q psy4626         166 S  166 (542)
Q Consensus       166 g  166 (542)
                      .
T Consensus       309 ~  309 (348)
T PLN02342        309 A  309 (348)
T ss_pred             c
Confidence            3

>PRK02102 ornithine carbamoyltransferase; Validated

Probab=93.79  E-value=1.1  Score=47.56  Aligned_cols=123  Identities=16%  Similarity=0.151  Sum_probs=77.3

Q ss_pred             hcccccceeecCchhhhHHHHhHHHHHHHHHH--HHHhhcCccccCcEEEEEcCC--hhHHHHHHHHHhCCCEEEEEeCC
Q psy4626          34 AGKLTVPAMNVNDSVTKTKFDNLYMCRESIID--SLKRSTDVMFGGKQVVLCGYG--EVGKGCCQSLKGLGCVIYITEID  109 (542)
Q Consensus        34 ~~~L~~PV~~vn~s~~K~~fd~~~g~~~s~~~--ai~r~~~~~l~GktVvViG~G--~IG~~vA~~l~~~Ga~Viv~d~d  109 (542)
                      .....+||||.-+. .-+.       -|++.+  .+.+..+ .+.|.+|+++|-+  .+....+..+..+|++|.++-+.
T Consensus       119 a~~~~vPVINa~~~-~~HP-------tQaLaDl~Ti~e~~g-~l~g~~va~vGd~~~~v~~Sl~~~~~~~g~~v~~~~P~  189 (331)
T PRK02102        119 AKYSGVPVWNGLTD-EWHP-------TQMLADFMTMKEHFG-PLKGLKLAYVGDGRNNMANSLMVGGAKLGMDVRICAPK  189 (331)
T ss_pred             HHhCCCCEEECCCC-CCCh-------HHHHHHHHHHHHHhC-CCCCCEEEEECCCcccHHHHHHHHHHHcCCEEEEECCc
Confidence            33567899987663 1111       122222  2322222 4789999999996  67788888899999999998543


Q ss_pred             chhhh---------hhhcCCce---eeCHHHHhcCCcEEEEcC----C------------CcccCCHHHHh-ccCCCeEE
Q psy4626         110 PICAL---------QACMDGFS---VVKLNEVIRTVDIVVTAT----G------------NKNVVTREHMD-KMKNGCVV  160 (542)
Q Consensus       110 p~r~~---------~A~~~G~~---v~~l~e~l~~aDvVi~at----G------------~~~lI~~e~l~-~mk~Gail  160 (542)
                      .....         .+...|..   ..+++++++++|||....    |            ..--++.+.++ ..++++++
T Consensus       190 ~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~aDvvyt~~w~~~~~~~~~~~~~~~~~~y~vt~ell~~~~~~d~iv  269 (331)
T PRK02102        190 ELWPEEELVALAREIAKETGAKITITEDPEEAVKGADVIYTDVWVSMGEEDEWEERIKLLKPYQVNMDLMKATGNPDVIF  269 (331)
T ss_pred             ccccCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEcCcccCccccchHHHHHhccCCcCCHHHHhhhcCCCCEE
Confidence            22211         12234533   346789999999999853    1            12345667777 46888888


Q ss_pred             EeccC
Q psy4626         161 CNMGH  165 (542)
Q Consensus       161 vnvG~  165 (542)
                      .-++-
T Consensus       270 mH~lP  274 (331)
T PRK02102        270 MHCLP  274 (331)
T ss_pred             ECCCC
Confidence            76554

>PRK07326 short chain dehydrogenase; Provisional

Probab=93.78  E-value=0.17  Score=49.27  Aligned_cols=40  Identities=23%  Similarity=0.232  Sum_probs=35.1

Q ss_pred             ccCcEEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCchhhh
Q psy4626          75 FGGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICAL  114 (542)
Q Consensus        75 l~GktVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~  114 (542)
                      +.+++++|+|. |.||+.+++.|...|++|+++++++.+..
T Consensus         4 ~~~~~ilItGatg~iG~~la~~l~~~g~~V~~~~r~~~~~~   44 (237)
T PRK07326          4 LKGKVALITGGSKGIGFAIAEALLAEGYKVAITARDQKELE   44 (237)
T ss_pred             CCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEeeCCHHHHH
Confidence            45899999996 89999999999999999999999886543

>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=93.66  E-value=0.057  Score=55.85  Aligned_cols=42  Identities=29%  Similarity=0.548  Sum_probs=38.3

Q ss_pred             eehhhhcccCcEEEEccCCCCccCHhHHhcCCCCcEEEccCCCCc
Q psy4626         302 VKLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNT  346 (542)
Q Consensus       302 ~~~~~a~~~~d~~~t~tg~~~vi~~~~~~~mk~gail~n~gh~~~  346 (542)
                      ..+.+..++|||+|+++|.+++|+.+++   |+||+++++|.-.+
T Consensus       193 ~~l~~~~~~ADIvI~AvG~p~~i~~~~i---k~gavVIDvGi~~~  234 (284)
T PRK14190        193 KNLAELTKQADILIVAVGKPKLITADMV---KEGAVVIDVGVNRL  234 (284)
T ss_pred             hhHHHHHHhCCEEEEecCCCCcCCHHHc---CCCCEEEEeecccc
Confidence            3578999999999999999999999998   89999999997764

>PRK08223 hypothetical protein; Validated

Probab=93.63  E-value=0.13  Score=53.43  Aligned_cols=37  Identities=27%  Similarity=0.386  Sum_probs=33.8

Q ss_pred             cccCcEEEEEcCChhHHHHHHHHHhCCC-EEEEEeCCc
Q psy4626          74 MFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDP  110 (542)
Q Consensus        74 ~l~GktVvViG~G~IG~~vA~~l~~~Ga-~Viv~d~dp  110 (542)
                      .+..++|+|+|+|-+|..++..|...|. ++.++|.|.
T Consensus        24 kL~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~   61 (287)
T PRK08223         24 RLRNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDV   61 (287)
T ss_pred             HHhcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence            4678899999999999999999999999 899998775

>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]

Probab=93.57  E-value=0.41  Score=48.38  Aligned_cols=67  Identities=19%  Similarity=0.254  Sum_probs=50.2

Q ss_pred             ccCcEEEEEcCC-hhHHHHHHHHHhCCCEEEEEeCCchhhhh-hhcCC---ce-----eeCHHH----------HhcCCc
Q psy4626          75 FGGKQVVLCGYG-EVGKGCCQSLKGLGCVIYITEIDPICALQ-ACMDG---FS-----VVKLNE----------VIRTVD  134 (542)
Q Consensus        75 l~GktVvViG~G-~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~-A~~~G---~~-----v~~l~e----------~l~~aD  134 (542)
                      +.+|.++|.|+. -||..+|+.|...|++|+...++..|+.. +.+.+   +.     +.+.++          .+...|
T Consensus         4 ~~~kv~lITGASSGiG~A~A~~l~~~G~~vvl~aRR~drL~~la~~~~~~~~~~~~~DVtD~~~~~~~i~~~~~~~g~iD   83 (246)
T COG4221           4 LKGKVALITGASSGIGEATARALAEAGAKVVLAARREERLEALADEIGAGAALALALDVTDRAAVEAAIEALPEEFGRID   83 (246)
T ss_pred             CCCcEEEEecCcchHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHhhccCceEEEeeccCCHHHHHHHHHHHHHhhCccc
Confidence            568999999996 59999999999999999999998887653 33444   11     223221          236799


Q ss_pred             EEEEcCC
Q psy4626         135 IVVTATG  141 (542)
Q Consensus       135 vVi~atG  141 (542)
                      ++|+..|
T Consensus        84 iLvNNAG   90 (246)
T COG4221          84 ILVNNAG   90 (246)
T ss_pred             EEEecCC
Confidence            9999765

>PRK05872 short chain dehydrogenase; Provisional

Probab=93.55  E-value=0.23  Score=50.90  Aligned_cols=41  Identities=20%  Similarity=0.344  Sum_probs=36.3

Q ss_pred             cccCcEEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCchhhh
Q psy4626          74 MFGGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICAL  114 (542)
Q Consensus        74 ~l~GktVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~  114 (542)
                      .+.|++++|.|. |.||+.+|+.+...|++|+++++++.++.
T Consensus         6 ~l~gk~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~l~   47 (296)
T PRK05872          6 SLAGKVVVVTGAARGIGAELARRLHARGAKLALVDLEEAELA   47 (296)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence            467999999997 78999999999999999999998876543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	542
3mtg_A	444	Crystal Structure Of Human S-Adenosyl Homocysteine		1e-136
3mtg_A	444	Crystal Structure Of Human S-Adenosyl Homocysteine		3e-52
3mtg_A	444	Crystal Structure Of Human S-Adenosyl Homocysteine		6e-47
3gvp_A	435	Human Sahh-Like Domain Of Human Adenosylhomocystein		1e-134
3gvp_A	435	Human Sahh-Like Domain Of Human Adenosylhomocystein		1e-52
3gvp_A	435	Human Sahh-Like Domain Of Human Adenosylhomocystein		4e-51
3d64_A	494	Crystal Structure Of S-Adenosyl-L-Homocysteine Hydr		9e-89
3d64_A	494	Crystal Structure Of S-Adenosyl-L-Homocysteine Hydr		1e-27
3d64_A	494	Crystal Structure Of S-Adenosyl-L-Homocysteine Hydr		4e-23
3n58_A	464	Crystal Structure Of S-Adenosyl-L-Homocysteine Hydr		1e-80
3n58_A	464	Crystal Structure Of S-Adenosyl-L-Homocysteine Hydr		4e-27
3n58_A	464	Crystal Structure Of S-Adenosyl-L-Homocysteine Hydr		1e-23
3h9u_A	436	S-Adenosyl Homocysteine Hydrolase (Sahh) From Trypa		2e-76
3h9u_A	436	S-Adenosyl Homocysteine Hydrolase (Sahh) From Trypa		2e-30
1v8b_A	479	Crystal Structure Of A Hydrolase Length = 479		1e-73
1v8b_A	479	Crystal Structure Of A Hydrolase Length = 479		8e-22
1v8b_A	479	Crystal Structure Of A Hydrolase Length = 479		3e-17
1b3r_A	431	Rat Liver S-Adenosylhomocystein Hydrolase Length =		1e-72
1b3r_A	431	Rat Liver S-Adenosylhomocystein Hydrolase Length =		2e-31
3ond_A	488	Crystal Structure Of Lupinus Luteus S-Adenosyl-L-Ho		2e-72
3ond_A	488	Crystal Structure Of Lupinus Luteus S-Adenosyl-L-Ho		1e-20
3nj4_A	435	Fluoro-Neplanocin A In Human S-Adenosylhomocysteine		3e-72
3nj4_A	435	Fluoro-Neplanocin A In Human S-Adenosylhomocysteine		2e-31
1d4f_A	431	Crystal Structure Of Recombinant Rat-Liver D244e Mu		3e-72
1d4f_A	431	Crystal Structure Of Recombinant Rat-Liver D244e Mu		2e-31
1li4_A	432	Human S-Adenosylhomocysteine Hydrolase Complexed Wi		4e-72
1li4_A	432	Human S-Adenosylhomocysteine Hydrolase Complexed Wi		2e-31
1xwf_A	431	K185n Mutated S-adenosylhomocysteine Hydrolase Leng		4e-72
1xwf_A	431	K185n Mutated S-adenosylhomocysteine Hydrolase Leng		7e-31
3ce6_A	494	Crystal Structure Of Mycobacterium Tuberculosis S-A		2e-71
3ce6_A	494	Crystal Structure Of Mycobacterium Tuberculosis S-A		3e-24
3dhy_A	495	Crystal Structures Of Mycobacterium Tuberculosis S-		2e-71
3dhy_A	495	Crystal Structures Of Mycobacterium Tuberculosis S-		3e-24
1a7a_A	432	Structure Of Human Placental S-adenosylhomocysteine		1e-68
1a7a_A	432	Structure Of Human Placental S-adenosylhomocysteine		2e-30
3g1u_A	437	Crystal Structure Of Leishmania Major S- Adenosylho		2e-68
3g1u_A	437	Crystal Structure Of Leishmania Major S- Adenosylho		2e-30

>pdb|3MTG|A Chain A, Crystal Structure Of Human S-Adenosyl Homocysteine Hydrolase Protein Length = 444

Iteration: 1
 Score =  480 bits (1236), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 221/273 (80%), Positives = 249/273 (91%)
Query: 22  IVGCTHINAQTAAGKLTVPAMNVNDSVTKTKFDNLYMCRESIIDSLKRSTDVMFGGKQVV 81
           + G   +   + AGKL VPAMNVNDSVTK KFDNLY CRESI+D LKR+TDVMFGGKQVV
Sbjct: 170 VTGVHRLYQLSKAGKLCVPAMNVNDSVTKQKFDNLYCCRESILDGLKRTTDVMFGGKQVV 229
Query: 82  LCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATG 141
           +CGYGEVGKGCC +LK LG ++YITEIDPICALQACMDGF VVKLNEVIR VD+V+T TG
Sbjct: 230 VCGYGEVGKGCCAALKALGAIVYITEIDPICALQACMDGFRVVKLNEVIRQVDVVITCTG 289
Query: 142 NKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIV 201
           NKNVVTREH+D+MKN C+VCNMGHSNTEIDV SLRTP+LTWE+VRSQVDHVIWPDGKR+V
Sbjct: 290 NKNVVTREHLDRMKNSCIVCNMGHSNTEIDVTSLRTPELTWERVRSQVDHVIWPDGKRVV 349
Query: 202 LLAEGRLVNLSCSSLPSFVVSITACTQALALIELFNAPSGRYKSDVYLLPKKMDEYVASL 261
           LLAEGRL+NLSCS++P+FV+SITA TQALALIEL+NAP GRYK DVYLLPKKMDEYVASL
Sbjct: 350 LLAEGRLLNLSCSTVPTFVLSITATTQALALIELYNAPEGRYKQDVYLLPKKMDEYVASL 409
Query: 262 HLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYY 294
           HLP+FDAHLTEL+D+QAKY+GLNK GPFKP+YY
Sbjct: 410 HLPSFDAHLTELADDQAKYLGLNKNGPFKPNYY 442

>pdb|3MTG|A Chain A, Crystal Structure Of Human S-Adenosyl Homocysteine Hydrolase Protein Length = 444

Iteration: 1
 Score =  203 bits (516), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 103/153 (67%), Positives = 121/153 (79%), Gaps = 10/153 (6%)
Query: 296 MDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRT 355
           MDGF VVKLNEVIR VD+V+T TGNKNVVTREH+D+MKN C+VCNMGHSNTEIDV SLRT
Sbjct: 266 MDGFRVVKLNEVIRQVDVVITCTGNKNVVTREHLDRMKNSCIVCNMGHSNTEIDVTSLRT 325
Query: 356 PDLTWEKVRSQVDHVIWPDGKRIVLLAEGRLVNLSCSSLPSFVVSITACTQRDKSSLIPC 415
           P+LTWE+VRSQVDHVIWPDGKR+VLLAEGRL+NLSCS++P+FV+SITA TQ    +LI  
Sbjct: 326 PELTWERVRSQVDHVIWPDGKRVVLLAEGRLLNLSCSTVPTFVLSITATTQ--ALALIEL 383
Query: 416 YHL---RFASNLAKYLLNSLTSSYTG---LPVF 442
           Y+    R+  ++  YLL      Y     LP F
Sbjct: 384 YNAPEGRYKQDV--YLLPKKMDEYVASLHLPSF 414

>pdb|3MTG|A Chain A, Crystal Structure Of Human S-Adenosyl Homocysteine Hydrolase Protein Length = 444

Iteration: 1
 Score =  185 bits (469), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 82/102 (80%), Positives = 91/102 (89%), Gaps = 2/102 (1%)
Query: 442 FAWRGETEEDFWWCIDKCVN--SWQPNMILDDGGDATHWMLKKYPTMFKAIKGIVEESLT 499
           FAW+GE+E+DFWWCID+CVN   WQ NMILDDGGD THW+ KKYP +FK I+GIVEES+T
Sbjct: 112 FAWKGESEDDFWWCIDRCVNMDGWQANMILDDGGDLTHWVYKKYPNVFKKIRGIVEESVT 171
Query: 500 GVHRLYQLSKAGKLTVPAMNVNDSVTKTKFDNLYMCRESIID 541
           GVHRLYQLSKAGKL VPAMNVNDSVTK KFDNLY CRESI+D
Sbjct: 172 GVHRLYQLSKAGKLCVPAMNVNDSVTKQKFDNLYCCRESILD 213

>pdb|3GVP|A Chain A, Human Sahh-Like Domain Of Human Adenosylhomocysteinase 3 Length = 435

Iteration: 1
 Score =  474 bits (1221), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 220/278 (79%), Positives = 249/278 (89%)
Query: 15  KPLKNARIVGCTHINAQTAAGKLTVPAMNVNDSVTKTKFDNLYMCRESIIDSLKRSTDVM 74
           K +    + G   +   + AGKL VPAMNVNDSVTK KFDNLY CRESI+D LKR+TD+M
Sbjct: 158 KGIVEESVTGVHRLYQLSKAGKLCVPAMNVNDSVTKQKFDNLYCCRESILDGLKRTTDMM 217
Query: 75  FGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVD 134
           FGGKQVV+CGYGEVGKGCC +LK +G ++Y+TEIDPICALQACMDGF +VKLNEVIR VD
Sbjct: 218 FGGKQVVVCGYGEVGKGCCAALKAMGSIVYVTEIDPICALQACMDGFRLVKLNEVIRQVD 277
Query: 135 IVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIW 194
           IV+T TGNKNVVTREH+D+MKN C+VCNMGHSNTEIDV SLRTP+LTWE+VRSQVDHVIW
Sbjct: 278 IVITCTGNKNVVTREHLDRMKNSCIVCNMGHSNTEIDVASLRTPELTWERVRSQVDHVIW 337
Query: 195 PDGKRIVLLAEGRLVNLSCSSLPSFVVSITACTQALALIELFNAPSGRYKSDVYLLPKKM 254
           PDGKRIVLLAEGRL+NLSCS++P+FV+SITA TQALALIEL+NAP GRYK DVYLLPKKM
Sbjct: 338 PDGKRIVLLAEGRLLNLSCSTVPTFVLSITATTQALALIELYNAPEGRYKQDVYLLPKKM 397
Query: 255 DEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPS 292
           DEYVASLHLPTFDAHLTEL+DEQAKY+GLNK GPFKP+
Sbjct: 398 DEYVASLHLPTFDAHLTELTDEQAKYLGLNKNGPFKPN 435

>pdb|3GVP|A Chain A, Human Sahh-Like Domain Of Human Adenosylhomocysteinase 3 Length = 435

Iteration: 1
 Score =  204 bits (518), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 104/153 (67%), Positives = 121/153 (79%), Gaps = 10/153 (6%)
Query: 296 MDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRT 355
           MDGF +VKLNEVIR VDIV+T TGNKNVVTREH+D+MKN C+VCNMGHSNTEIDV SLRT
Sbjct: 261 MDGFRLVKLNEVIRQVDIVITCTGNKNVVTREHLDRMKNSCIVCNMGHSNTEIDVASLRT 320
Query: 356 PDLTWEKVRSQVDHVIWPDGKRIVLLAEGRLVNLSCSSLPSFVVSITACTQRDKSSLIPC 415
           P+LTWE+VRSQVDHVIWPDGKRIVLLAEGRL+NLSCS++P+FV+SITA TQ    +LI  
Sbjct: 321 PELTWERVRSQVDHVIWPDGKRIVLLAEGRLLNLSCSTVPTFVLSITATTQ--ALALIEL 378
Query: 416 YHL---RFASNLAKYLLNSLTSSYTG---LPVF 442
           Y+    R+  ++  YLL      Y     LP F
Sbjct: 379 YNAPEGRYKQDV--YLLPKKMDEYVASLHLPTF 409

>pdb|3GVP|A Chain A, Human Sahh-Like Domain Of Human Adenosylhomocysteinase 3 Length = 435

Iteration: 1
 Score =  199 bits (505), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 88/107 (82%), Positives = 96/107 (89%), Gaps = 2/107 (1%)
Query: 437 TGLPVFAWRGETEEDFWWCIDKCVN--SWQPNMILDDGGDATHWMLKKYPTMFKAIKGIV 494
           +G PVFAW+GE+E+DFWWCID+CVN   WQPNMILDDGGD THW+ KKYP MFK IKGIV
Sbjct: 102 SGFPVFAWKGESEDDFWWCIDRCVNVEGWQPNMILDDGGDLTHWIYKKYPNMFKKIKGIV 161
Query: 495 EESLTGVHRLYQLSKAGKLTVPAMNVNDSVTKTKFDNLYMCRESIID 541
           EES+TGVHRLYQLSKAGKL VPAMNVNDSVTK KFDNLY CRESI+D
Sbjct: 162 EESVTGVHRLYQLSKAGKLCVPAMNVNDSVTKQKFDNLYCCRESILD 208

>pdb|3D64|A Chain A, Crystal Structure Of S-Adenosyl-L-Homocysteine Hydrolase From Burkholderia Pseudomallei Length = 494

Iteration: 1
 Score =  324 bits (830), Expect = 9e-89,   Method: Compositional matrix adjust.
 Identities = 155/287 (54%), Positives = 200/287 (69%), Gaps = 4/287 (1%)
Query: 9   KRAGDDKPLKNARIVGCTHINAQTAAGKLTVPAMNVNDSVTKTKFDNLYMCRESIIDSLK 68
           KR    K +      G   +      G+L  PA NVNDSVTK+KFDNLY CRES++D +K
Sbjct: 209 KRLAHIKGVTEETTTGVHRLYQMEKDGRLPFPAFNVNDSVTKSKFDNLYGCRESLVDGIK 268
Query: 69  RSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNE 128
           R+TDVM  GK  V+ GYG+VGKGC QSL+GLG  +++TEIDPICALQA M+G+ VV +  
Sbjct: 269 RATDVMIAGKIAVVAGYGDVGKGCAQSLRGLGATVWVTEIDPICALQAAMEGYRVVTMEY 328
Query: 129 VIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQ 188
                DI VTATGN +V+  +HM  M++  +VCN+GH ++EIDV S R     WE ++ Q
Sbjct: 329 AADKADIFVTATGNYHVINHDHMKAMRHNAIVCNIGHFDSEIDVASTR--QYQWENIKPQ 386
Query: 189 VDHVIWPDGKRIVLLAEGRLVNLSCSS-LPSFVVSITACTQALALIELFNAPSGRYKSDV 247
           VDH+I+PDGKR++LLAEGRLVNL C++  PSFV+S +   Q LA IELF    G Y + V
Sbjct: 387 VDHIIFPDGKRVILLAEGRLVNLGCATGHPSFVMSNSFTNQTLAQIELFTR-GGEYANKV 445
Query: 248 YLLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYY 294
           Y+LPK +DE VA LHL    A L+ELSD+QA Y+G++KAGPFKP +Y
Sbjct: 446 YVLPKHLDEKVARLHLARIGAQLSELSDDQAAYIGVSKAGPFKPDHY 492

>pdb|3D64|A Chain A, Crystal Structure Of S-Adenosyl-L-Homocysteine Hydrolase From Burkholderia Pseudomallei Length = 494

Iteration: 1
 Score =  120 bits (302), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 56/113 (49%), Positives = 79/113 (69%), Gaps = 3/113 (2%)
Query: 295 SMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLR 354
           +M+G+ VV +       DI VTATGN +V+  +HM  M++  +VCN+GH ++EIDV S R
Sbjct: 317 AMEGYRVVTMEYAADKADIFVTATGNYHVINHDHMKAMRHNAIVCNIGHFDSEIDVASTR 376
Query: 355 TPDLTWEKVRSQVDHVIWPDGKRIVLLAEGRLVNLSCSS-LPSFVVSITACTQ 406
                WE ++ QVDH+I+PDGKR++LLAEGRLVNL C++  PSFV+S +   Q
Sbjct: 377 --QYQWENIKPQVDHIIFPDGKRVILLAEGRLVNLGCATGHPSFVMSNSFTNQ 427

>pdb|3D64|A Chain A, Crystal Structure Of S-Adenosyl-L-Homocysteine Hydrolase From Burkholderia Pseudomallei Length = 494

Iteration: 1
 Score =  106 bits (264), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 59/143 (41%), Positives = 79/143 (55%), Gaps = 38/143 (26%)
Query: 437 TGLPVFAWRGETEEDFWWCIDKCV---NSWQPNMILDDGGDATHWML------------- 480
            G PVFA++GE+ +++W    +     N    NMILDDGGDAT  ++             
Sbjct: 123 AGTPVFAFKGESLDEYWEFSHRIFEWPNGEFANMILDDGGDATLLLILGSKAEKDRSVIA 182
Query: 481 ----KKYPTMFKAI------------------KGIVEESLTGVHRLYQLSKAGKLTVPAM 518
               ++   +FK+I                  KG+ EE+ TGVHRLYQ+ K G+L  PA 
Sbjct: 183 RPTNEEEVALFKSIERHLEIDGSWYSKRLAHIKGVTEETTTGVHRLYQMEKDGRLPFPAF 242
Query: 519 NVNDSVTKTKFDNLYMCRESIID 541
           NVNDSVTK+KFDNLY CRES++D
Sbjct: 243 NVNDSVTKSKFDNLYGCRESLVD 265

>pdb|3N58|A Chain A, Crystal Structure Of S-Adenosyl-L-Homocysteine Hydrolase From Brucella Melitensis In Ternary Complex With Nad And Adenosine, Orthorhombic Form Length = 464

Iteration: 1
 Score =  297 bits (760), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 150/294 (51%), Positives = 196/294 (66%), Gaps = 6/294 (2%)
Query: 2   PGIMALRKRAGDDKPLKNARIVGCTHINAQTAAGKLTVPAMNVNDSVTKTKFDNLYMCRE 61
           PG    ++ A   K +      G   +      G L  PA+NVNDSVTK+KFDN Y C+E
Sbjct: 174 PGFFTKQRAA--IKGVTEETTTGVNRLYQLQKKGLLPFPAINVNDSVTKSKFDNKYGCKE 231
Query: 62  SIIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGF 121
           S++D ++R TDVM  GK  V+CGYG+VGKG  QSL G G  + +TE+DPICALQA MDGF
Sbjct: 232 SLVDGIRRGTDVMMAGKVAVVCGYGDVGKGSAQSLAGAGARVKVTEVDPICALQAAMDGF 291
Query: 122 SVVKLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLT 181
            VV L++   T DIVVT TGNK+V+T +HM KMK+ C+V N+GH + EI V +LR  +L 
Sbjct: 292 EVVTLDDAASTADIVVTTTGNKDVITIDHMRKMKDMCIVGNIGHFDNEIQVAALR--NLK 349
Query: 182 WEKVRSQVDHVIWPDGKRIVLLAEGRLVNL-SCSSLPSFVVSITACTQALALIELFNAPS 240
           W  V+ QVD + +PDGKR++LL+EGRL+NL + +  PSFV+S +   Q L  IELF    
Sbjct: 350 WTNVKPQVDLIEFPDGKRLILLSEGRLLNLGNATGHPSFVMSASFTNQVLGQIELFTRTD 409
Query: 241 GRYKSDVYLLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYY 294
             YK++VY+LPK +DE VA LHL    A LT LS+EQA Y+G+   GPFK  +Y
Sbjct: 410 A-YKNEVYVLPKHLDEKVARLHLDKLGAKLTVLSEEQAAYIGVTPQGPFKSEHY 462

>pdb|3N58|A Chain A, Crystal Structure Of S-Adenosyl-L-Homocysteine Hydrolase From Brucella Melitensis In Ternary Complex With Nad And Adenosine, Orthorhombic Form Length = 464

Iteration: 1
 Score =  119 bits (298), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 59/113 (52%), Positives = 82/113 (72%), Gaps = 3/113 (2%)
Query: 295 SMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLR 354
           +MDGF VV L++   T DIVVT TGNK+V+T +HM KMK+ C+V N+GH + EI V +LR
Sbjct: 287 AMDGFEVVTLDDAASTADIVVTTTGNKDVITIDHMRKMKDMCIVGNIGHFDNEIQVAALR 346
Query: 355 TPDLTWEKVRSQVDHVIWPDGKRIVLLAEGRLVNL-SCSSLPSFVVSITACTQ 406
             +L W  V+ QVD + +PDGKR++LL+EGRL+NL + +  PSFV+S +   Q
Sbjct: 347 --NLKWTNVKPQVDLIEFPDGKRLILLSEGRLLNLGNATGHPSFVMSASFTNQ 397

>pdb|3N58|A Chain A, Crystal Structure Of S-Adenosyl-L-Homocysteine Hydrolase From Brucella Melitensis In Ternary Complex With Nad And Adenosine, Orthorhombic Form Length = 464

Iteration: 1
 Score =  108 bits (269), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 66/144 (45%), Positives = 82/144 (56%), Gaps = 40/144 (27%)
Query: 437 TGLPVFAWRGETEEDFWWCIDKCVNSW---QP-NMILDDGGDATHWML------------ 480
           TG PVFA +GET E++W   D+ +  W   +P NMILDDGGDAT ++L            
Sbjct: 93  TGTPVFAVKGETLEEYWTYTDQ-IFQWPDGEPSNMILDDGGDATMYILIGARAEAGEDVL 151
Query: 481 ---------------KKY----PTMF----KAIKGIVEESLTGVHRLYQLSKAGKLTVPA 517
                          KK     P  F     AIKG+ EE+ TGV+RLYQL K G L  PA
Sbjct: 152 SNPQSEEEEVLFAQIKKRMAATPGFFTKQRAAIKGVTEETTTGVNRLYQLQKKGLLPFPA 211
Query: 518 MNVNDSVTKTKFDNLYMCRESIID 541
           +NVNDSVTK+KFDN Y C+ES++D
Sbjct: 212 INVNDSVTKSKFDNKYGCKESLVD 235

>pdb|3H9U|A Chain A, S-Adenosyl Homocysteine Hydrolase (Sahh) From Trypanosoma Brucei Length = 436

Iteration: 1
 Score =  283 bits (724), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 140/277 (50%), Positives = 192/277 (69%), Gaps = 6/277 (2%)
Query: 24  GCTHINAQTAAGKLTVPAMNVNDSVTKTKFDNLYMCRESIIDSLKRSTDVMFGGKQVVLC 83
           G  ++  +   GKLT+PAMNVNDSVTK+KFDNLY CRES++D +KR+TDVM  GK   +C
Sbjct: 158 GVKNLYKRLQRGKLTIPAMNVNDSVTKSKFDNLYGCRESLVDGIKRATDVMIAGKTACVC 217
Query: 84  GYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNK 143
           GYG+VGKGC  +L+G G  + +TE+DPI ALQA M+G+ V+ + +V+    I VT TGN 
Sbjct: 218 GYGDVGKGCAAALRGFGARVVVTEVDPINALQAAMEGYQVLLVEDVVEEAHIFVTTTGND 277
Query: 144 NVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIVLL 203
           +++T EH  +M++  +VCN+GH +TEI V  L+       +V+ QVD     +G+ I+LL
Sbjct: 278 DIITSEHFPRMRDDAIVCNIGHFDTEIQVAWLKANAKERVEVKPQVDRYTMANGRHIILL 337
Query: 204 AEGRLVNLSCSS-LPSFVVSITACTQALALIELF-NAPSGRY----KSDVYLLPKKMDEY 257
           AEGRLVNL C+S  PSFV+S + C Q LA IEL+ N  +G+Y    K+ VY LPKK+DE 
Sbjct: 338 AEGRLVNLGCASGHPSFVMSNSFCNQVLAQIELWTNRDTGKYPRGAKAQVYFLPKKLDEK 397
Query: 258 VASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYY 294
           VA+LHL    A LT+L+ +QA+Y+     GPFKP +Y
Sbjct: 398 VAALHLGKLGAKLTKLTPKQAEYINCPVDGPFKPDHY 434

>pdb|3H9U|A Chain A, S-Adenosyl Homocysteine Hydrolase (Sahh) From Trypanosoma Brucei Length = 436

Iteration: 1
 Score =  130 bits (327), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 59/108 (54%), Positives = 81/108 (75%), Gaps = 4/108 (3%)
Query: 438 GLPVFAWRGETEEDFWWCIDKCVNSWQ----PNMILDDGGDATHWMLKKYPTMFKAIKGI 493
           G+PVFAW+GETEE++ WC+ + +  +     PNM+LDDGGD T+++L +   +   I G+
Sbjct: 92  GIPVFAWKGETEEEYMWCMKQTLKGFSGDGYPNMLLDDGGDLTNYVLDECKELDGKIYGV 151
Query: 494 VEESLTGVHRLYQLSKAGKLTVPAMNVNDSVTKTKFDNLYMCRESIID 541
            EE+ TGV  LY+  + GKLT+PAMNVNDSVTK+KFDNLY CRES++D
Sbjct: 152 SEETTTGVKNLYKRLQRGKLTIPAMNVNDSVTKSKFDNLYGCRESLVD 199

>pdb|1V8B|A Chain A, Crystal Structure Of A Hydrolase Length = 479

Iteration: 1
 Score =  273 bits (699), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 134/274 (48%), Positives = 187/274 (68%), Gaps = 3/274 (1%)
Query: 24  GCTHINAQTAAGKLTVPAMNVNDSVTKTKFDNLYMCRESIIDSLKRSTDVMFGGKQVVLC 83
           G   +       +L   A+NVND+VTK K+DN+Y CR S+ D L R+TD +  GK VV+C
Sbjct: 204 GVLRLKKMDKQNELLFTAINVNDAVTKQKYDNVYGCRHSLPDGLMRATDFLISGKIVVIC 263
Query: 84  GYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNK 143
           GYG+VGKGC  S+KGLG  +YITEIDPICA+QA M+GF+VV L+E++   D  +T TGN 
Sbjct: 264 GYGDVGKGCASSMKGLGARVYITEIDPICAIQAVMEGFNVVTLDEIVDKGDFFITCTGNV 323
Query: 144 NVVTREHMDKMKNGCVVCNMGHSNTEIDVNSL-RTPDLTWEKVRSQVDHVIWPDGKRIVL 202
           +V+  EH+ KMKN  VV N+GH + EI VN L     +  E V+ QVD +  P+G +I++
Sbjct: 324 DVIKLEHLLKMKNNAVVGNIGHFDDEIQVNELFNYKGIHIENVKPQVDRITLPNGNKIIV 383
Query: 203 LAEGRLVNLSCSS-LPSFVVSITACTQALALIELF-NAPSGRYKSDVYLLPKKMDEYVAS 260
           LA GRL+NL C++  P+FV+S + C Q  A ++L+ N  + +Y++ VYLLPK +DE VA 
Sbjct: 384 LARGRLLNLGCATGHPAFVMSFSFCNQTFAQLDLWQNKDTNKYENKVYLLPKHLDEKVAL 443
Query: 261 LHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYY 294
            HL   +A LTEL D Q +++G+NK+GPFK + Y
Sbjct: 444 YHLKKLNASLTELDDNQCQFLGVNKSGPFKSNEY 477

>pdb|1V8B|A Chain A, Crystal Structure Of A Hydrolase Length = 479

Iteration: 1
 Score =  101 bits (252), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 51/113 (45%), Positives = 75/113 (66%), Gaps = 2/113 (1%)
Query: 296 MDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSL-R 354
           M+GF+VV L+E++   D  +T TGN +V+  EH+ KMKN  VV N+GH + EI VN L  
Sbjct: 298 MEGFNVVTLDEIVDKGDFFITCTGNVDVIKLEHLLKMKNNAVVGNIGHFDDEIQVNELFN 357
Query: 355 TPDLTWEKVRSQVDHVIWPDGKRIVLLAEGRLVNLSCSS-LPSFVVSITACTQ 406
              +  E V+ QVD +  P+G +I++LA GRL+NL C++  P+FV+S + C Q
Sbjct: 358 YKGIHIENVKPQVDRITLPNGNKIIVLARGRLLNLGCATGHPAFVMSFSFCNQ 410

>pdb|1V8B|A Chain A, Crystal Structure Of A Hydrolase Length = 479

Iteration: 1
 Score = 87.0 bits (214), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 52/155 (33%), Positives = 76/155 (49%), Gaps = 48/155 (30%)
Query: 434 SSYTGLPVFAWRGETEEDFWWCIDKCVNSWQ------PNMILDDGGDATHWMLK------ 481
           S+   + VFAW+ ET E++WWC++  + +W       P+MI+DDGGDAT  + K      
Sbjct: 92  STLENVTVFAWKNETLEEYWWCVESAL-TWGDGDDNGPDMIVDDGGDATLLVHKGVEYEK 150
Query: 482 -----------------------------------KYPTMFKAIKGIVEESLTGVHRLYQ 506
                                              K+  + K I G+ EE+ TGV RL +
Sbjct: 151 LYEEKNILPDPEKAKNEEERCFLTLLKNSILKNPKKWTNIAKKIIGVSEETTTGVLRLKK 210
Query: 507 LSKAGKLTVPAMNVNDSVTKTKFDNLYMCRESIID 541
           + K  +L   A+NVND+VTK K+DN+Y CR S+ D
Sbjct: 211 MDKQNELLFTAINVNDAVTKQKYDNVYGCRHSLPD 245

>pdb|1B3R|A Chain A, Rat Liver S-Adenosylhomocystein Hydrolase Length = 431

Iteration: 1
 Score =  270 bits (691), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 134/272 (49%), Positives = 184/272 (67%), Gaps = 2/272 (0%)
Query: 24  GCTHINAQTAAGKLTVPAMNVNDSVTKTKFDNLYMCRESIIDSLKRSTDVMFGGKQVVLC 83
           G  ++    A G L VPA+NVNDSVTK+KFDNLY CRES+ID +KR+TDVM  GK  V+ 
Sbjct: 159 GVHNLYKMMANGILKVPAINVNDSVTKSKFDNLYGCRESLIDGIKRATDVMIAGKVAVVA 218
Query: 84  GYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNK 143
           GYG+VGKGC Q+L+G G  + ITEIDPI ALQA M+G+ V  ++E  +  +I VT TG  
Sbjct: 219 GYGDVGKGCAQALRGFGARVIITEIDPINALQAAMEGYEVTTMDEACKEGNIFVTTTGCV 278
Query: 144 NVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIVLL 203
           +++   H ++MK+  +VCN+GH + EIDV  L    +    ++ QVD  +  +G RI+LL
Sbjct: 279 DIILGRHFEQMKDDAIVCNIGHFDVEIDVKWLNENAVEKVNIKPQVDRYLLKNGHRIILL 338
Query: 204 AEGRLVNLSCS-SLPSFVVSITACTQALALIELFNAPSGRYKSDVYLLPKKMDEYVASLH 262
           AEGRLVNL C+   PSFV+S +   Q +A IEL+  P  +Y   V+ LPKK+DE VA  H
Sbjct: 339 AEGRLVNLGCAMGHPSFVMSNSFTNQVMAQIELWTHPD-KYPVGVHFLPKKLDEAVAEAH 397
Query: 263 LPTFDAHLTELSDEQAKYMGLNKAGPFKPSYY 294
           L   +  LT+L+++QA+Y+G+   GPFKP +Y
Sbjct: 398 LGKLNVKLTKLTEKQAQYLGMPINGPFKPDHY 429

>pdb|1B3R|A Chain A, Rat Liver S-Adenosylhomocystein Hydrolase Length = 431

Iteration: 1
 Score =  134 bits (336), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 61/106 (57%), Positives = 81/106 (76%), Gaps = 2/106 (1%)
Query: 438 GLPVFAWRGETEEDFWWCIDKCVN--SWQPNMILDDGGDATHWMLKKYPTMFKAIKGIVE 495
           G+PVFAW+GET+E++ WCI++ ++      NMILDDGGD T+ +  K+P +   I+GI E
Sbjct: 95  GIPVFAWKGETDEEYLWCIEQTLHFKDGPLNMILDDGGDLTNLIHTKHPQLLSGIRGISE 154
Query: 496 ESLTGVHRLYQLSKAGKLTVPAMNVNDSVTKTKFDNLYMCRESIID 541
           E+ TGVH LY++   G L VPA+NVNDSVTK+KFDNLY CRES+ID
Sbjct: 155 ETTTGVHNLYKMMANGILKVPAINVNDSVTKSKFDNLYGCRESLID 200

>pdb|3OND|A Chain A, Crystal Structure Of Lupinus Luteus S-Adenosyl-L-Homocysteine Hydrolase In Complex With Adenosine Length = 488

Iteration: 1
 Score =  269 bits (688), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 136/275 (49%), Positives = 185/275 (67%), Gaps = 4/275 (1%)
Query: 24  GCTHINAQTAAGKLTVPAMNVNDSVTKTKFDNLYMCRESIIDSLKRSTDVMFGGKQVVLC 83
           G   +    A G L  PA+NVNDSVTK+KFDNLY CR S+ D L R+TDVM  GK  V+ 
Sbjct: 212 GVKRLYQMQANGTLLFPAINVNDSVTKSKFDNLYGCRHSLPDGLMRATDVMIAGKVAVVA 271
Query: 84  GYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNK 143
           GYG+VGKGC  +LK  G  + +TEIDPICALQA M+G  V+ L +V+   DI VT TGNK
Sbjct: 272 GYGDVGKGCAAALKQAGARVIVTEIDPICALQATMEGLQVLTLEDVVSEADIFVTTTGNK 331
Query: 144 NVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRT-PDLTWEKVRSQVDHVIWPD-GKRIV 201
           +++  +HM KMKN  +VCN+GH + EID+  L T P +    ++ Q D  ++P+    I+
Sbjct: 332 DIIMLDHMKKMKNNAIVCNIGHFDNEIDMLGLETHPGVKRITIKPQTDRWVFPETNTGII 391
Query: 202 LLAEGRLVNLSCSS-LPSFVVSITACTQALALIELFNA-PSGRYKSDVYLLPKKMDEYVA 259
           +LAEGRL+NL C++  PSFV+S +   Q +A +EL+N   SG+Y+  VY+LPK +DE VA
Sbjct: 392 ILAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWNEKSSGKYEKKVYVLPKHLDEKVA 451
Query: 260 SLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYY 294
           +LHL    A LT+LS +QA Y+ +   GP+KP +Y
Sbjct: 452 ALHLEKLGAKLTKLSKDQADYISVPVEGPYKPFHY 486

>pdb|3OND|A Chain A, Crystal Structure Of Lupinus Luteus S-Adenosyl-L-Homocysteine Hydrolase In Complex With Adenosine Length = 488

Iteration: 1
 Score = 97.8 bits (242), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 54/146 (36%), Positives = 74/146 (50%), Gaps = 46/146 (31%)
Query: 441 VFAWRGETEEDFWWCIDKCVNSWQP----NMILDDGGDATHWML---------------- 480
           VFAW+GET +++WWC ++ ++ W P    ++I+DDGGD T  +                 
Sbjct: 109 VFAWKGETLQEYWWCTERALD-WGPGGGPDLIVDDGGDTTLLIHEGVKAEEIYEKSGQFP 167
Query: 481 -------------------------KKYPTMFKAIKGIVEESLTGVHRLYQLSKAGKLTV 515
                                    K+Y  M   + G+ EE+ TGV RLYQ+   G L  
Sbjct: 168 DPDSTDNAEFKIVLSIIKEGLKTDPKRYHKMKDRVVGVSEETTTGVKRLYQMQANGTLLF 227
Query: 516 PAMNVNDSVTKTKFDNLYMCRESIID 541
           PA+NVNDSVTK+KFDNLY CR S+ D
Sbjct: 228 PAINVNDSVTKSKFDNLYGCRHSLPD 253

>pdb|3NJ4|A Chain A, Fluoro-Neplanocin A In Human S-Adenosylhomocysteine Hydrolase Length = 435

Iteration: 1
 Score =  269 bits (688), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 134/272 (49%), Positives = 185/272 (68%), Gaps = 2/272 (0%)
Query: 24  GCTHINAQTAAGKLTVPAMNVNDSVTKTKFDNLYMCRESIIDSLKRSTDVMFGGKQVVLC 83
           G  ++    A G L VPA+NVNDSVTK+KFDNLY CRES+ID +KR+TDVM  GK  V+ 
Sbjct: 163 GVHNLYKMMANGILKVPAINVNDSVTKSKFDNLYGCRESLIDGIKRATDVMIAGKVAVVA 222
Query: 84  GYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNK 143
           GYG+VGKGC Q+L+G G  + ITEIDPI ALQA M+G+ V  ++E  +  +I VT TG  
Sbjct: 223 GYGDVGKGCAQALRGFGARVIITEIDPINALQAAMEGYEVTTMDEACQEGNIFVTTTGCI 282
Query: 144 NVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIVLL 203
           +++   H ++MK+  +VCN+GH + EIDV  L    +    ++ QVD     +G+RI+LL
Sbjct: 283 DIILGRHFEQMKDDAIVCNIGHFDVEIDVKWLNENAVEKVNIKPQVDRYRLKNGRRIILL 342
Query: 204 AEGRLVNLSCS-SLPSFVVSITACTQALALIELFNAPSGRYKSDVYLLPKKMDEYVASLH 262
           AEGRLVNL C+   PSFV+S +   Q +A IEL+  P  +Y   V+ LPKK+DE VA  H
Sbjct: 343 AEGRLVNLGCAMGHPSFVMSNSFTNQVMAQIELWTHPD-KYPVGVHFLPKKLDEAVAEAH 401
Query: 263 LPTFDAHLTELSDEQAKYMGLNKAGPFKPSYY 294
           L   +  LT+L+++QA+Y+G++  GPFKP +Y
Sbjct: 402 LGKLNVKLTKLTEKQAQYLGMSCDGPFKPDHY 433

>pdb|3NJ4|A Chain A, Fluoro-Neplanocin A In Human S-Adenosylhomocysteine Hydrolase Length = 435

Iteration: 1
 Score =  133 bits (335), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 61/106 (57%), Positives = 80/106 (75%), Gaps = 2/106 (1%)
Query: 438 GLPVFAWRGETEEDFWWCIDKCV--NSWQPNMILDDGGDATHWMLKKYPTMFKAIKGIVE 495
           G+PV+AW+GET+E++ WCI++ +       NMILDDGGD T+ +  KYP +   I+GI E
Sbjct: 99  GIPVYAWKGETDEEYLWCIEQTLYFKDGPLNMILDDGGDLTNLIHTKYPQLLPGIRGISE 158
Query: 496 ESLTGVHRLYQLSKAGKLTVPAMNVNDSVTKTKFDNLYMCRESIID 541
           E+ TGVH LY++   G L VPA+NVNDSVTK+KFDNLY CRES+ID
Sbjct: 159 ETTTGVHNLYKMMANGILKVPAINVNDSVTKSKFDNLYGCRESLID 204

>pdb|1D4F|A Chain A, Crystal Structure Of Recombinant Rat-Liver D244e Mutant S- Adenosylhomocysteine Hydrolase Length = 431

Iteration: 1
 Score =  269 bits (687), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 133/272 (48%), Positives = 184/272 (67%), Gaps = 2/272 (0%)
Query: 24  GCTHINAQTAAGKLTVPAMNVNDSVTKTKFDNLYMCRESIIDSLKRSTDVMFGGKQVVLC 83
           G  ++    A G L VPA+NVNDSVTK+KFDNLY CRES+ID +KR+TDVM  GK  V+ 
Sbjct: 159 GVHNLYKMMANGILKVPAINVNDSVTKSKFDNLYGCRESLIDGIKRATDVMIAGKVAVVA 218
Query: 84  GYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNK 143
           GYG+VGKGC Q+L+G G  + ITEI+PI ALQA M+G+ V  ++E  +  +I VT TG  
Sbjct: 219 GYGDVGKGCAQALRGFGARVIITEIEPINALQAAMEGYEVTTMDEACKEGNIFVTTTGCV 278
Query: 144 NVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIVLL 203
           +++   H ++MK+  +VCN+GH + EIDV  L    +    ++ QVD  +  +G RI+LL
Sbjct: 279 DIILGRHFEQMKDDAIVCNIGHFDVEIDVKWLNENAVEKVNIKPQVDRYLLKNGHRIILL 338
Query: 204 AEGRLVNLSCS-SLPSFVVSITACTQALALIELFNAPSGRYKSDVYLLPKKMDEYVASLH 262
           AEGRLVNL C+   PSFV+S +   Q +A IEL+  P  +Y   V+ LPKK+DE VA  H
Sbjct: 339 AEGRLVNLGCAMGHPSFVMSNSFTNQVMAQIELWTHPD-KYPVGVHFLPKKLDEAVAEAH 397
Query: 263 LPTFDAHLTELSDEQAKYMGLNKAGPFKPSYY 294
           L   +  LT+L+++QA+Y+G+   GPFKP +Y
Sbjct: 398 LGKLNVKLTKLTEKQAQYLGMPINGPFKPDHY 429

>pdb|1D4F|A Chain A, Crystal Structure Of Recombinant Rat-Liver D244e Mutant S- Adenosylhomocysteine Hydrolase Length = 431

Iteration: 1
 Score =  134 bits (336), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 61/106 (57%), Positives = 81/106 (76%), Gaps = 2/106 (1%)
Query: 438 GLPVFAWRGETEEDFWWCIDKCVN--SWQPNMILDDGGDATHWMLKKYPTMFKAIKGIVE 495
           G+PVFAW+GET+E++ WCI++ ++      NMILDDGGD T+ +  K+P +   I+GI E
Sbjct: 95  GIPVFAWKGETDEEYLWCIEQTLHFKDGPLNMILDDGGDLTNLIHTKHPQLLSGIRGISE 154
Query: 496 ESLTGVHRLYQLSKAGKLTVPAMNVNDSVTKTKFDNLYMCRESIID 541
           E+ TGVH LY++   G L VPA+NVNDSVTK+KFDNLY CRES+ID
Sbjct: 155 ETTTGVHNLYKMMANGILKVPAINVNDSVTKSKFDNLYGCRESLID 200

>pdb|1LI4|A Chain A, Human S-Adenosylhomocysteine Hydrolase Complexed With Neplanocin Length = 432

Iteration: 1
 Score =  269 bits (687), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 134/272 (49%), Positives = 185/272 (68%), Gaps = 2/272 (0%)
Query: 24  GCTHINAQTAAGKLTVPAMNVNDSVTKTKFDNLYMCRESIIDSLKRSTDVMFGGKQVVLC 83
           G  ++    A G L VPA+NVNDSVTK+KFDNLY CRES+ID +KR+TDVM  GK  V+ 
Sbjct: 160 GVHNLYKMMANGILKVPAINVNDSVTKSKFDNLYGCRESLIDGIKRATDVMIAGKVAVVA 219
Query: 84  GYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNK 143
           GYG+VGKGC Q+L+G G  + ITEIDPI ALQA M+G+ V  ++E  +  +I VT TG  
Sbjct: 220 GYGDVGKGCAQALRGFGARVIITEIDPINALQAAMEGYEVTTMDEACQEGNIFVTTTGCI 279
Query: 144 NVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIVLL 203
           +++   H ++MK+  +VCN+GH + EIDV  L    +    ++ QVD     +G+RI+LL
Sbjct: 280 DIILGRHFEQMKDDAIVCNIGHFDVEIDVKWLNENAVEKVNIKPQVDRYRLKNGRRIILL 339
Query: 204 AEGRLVNLSCS-SLPSFVVSITACTQALALIELFNAPSGRYKSDVYLLPKKMDEYVASLH 262
           AEGRLVNL C+   PSFV+S +   Q +A IEL+  P  +Y   V+ LPKK+DE VA  H
Sbjct: 340 AEGRLVNLGCAMGHPSFVMSNSFTNQVMAQIELWTHPD-KYPVGVHFLPKKLDEAVAEAH 398
Query: 263 LPTFDAHLTELSDEQAKYMGLNKAGPFKPSYY 294
           L   +  LT+L+++QA+Y+G++  GPFKP +Y
Sbjct: 399 LGKLNVKLTKLTEKQAQYLGMSCDGPFKPDHY 430

>pdb|1LI4|A Chain A, Human S-Adenosylhomocysteine Hydrolase Complexed With Neplanocin Length = 432

Iteration: 1
 Score =  133 bits (335), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 61/106 (57%), Positives = 80/106 (75%), Gaps = 2/106 (1%)
Query: 438 GLPVFAWRGETEEDFWWCIDKCV--NSWQPNMILDDGGDATHWMLKKYPTMFKAIKGIVE 495
           G+PV+AW+GET+E++ WCI++ +       NMILDDGGD T+ +  KYP +   I+GI E
Sbjct: 96  GIPVYAWKGETDEEYLWCIEQTLYFKDGPLNMILDDGGDLTNLIHTKYPQLLPGIRGISE 155
Query: 496 ESLTGVHRLYQLSKAGKLTVPAMNVNDSVTKTKFDNLYMCRESIID 541
           E+ TGVH LY++   G L VPA+NVNDSVTK+KFDNLY CRES+ID
Sbjct: 156 ETTTGVHNLYKMMANGILKVPAINVNDSVTKSKFDNLYGCRESLID 201

>pdb|1XWF|A Chain A, K185n Mutated S-adenosylhomocysteine Hydrolase Length = 431

Iteration: 1
 Score =  268 bits (686), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 133/272 (48%), Positives = 183/272 (67%), Gaps = 2/272 (0%)
Query: 24  GCTHINAQTAAGKLTVPAMNVNDSVTKTKFDNLYMCRESIIDSLKRSTDVMFGGKQVVLC 83
           G  ++    A G L VPA+NVNDSVT +KFDNLY CRES+ID +KR+TDVM  GK  V+ 
Sbjct: 159 GVHNLYKMMANGILKVPAINVNDSVTNSKFDNLYGCRESLIDGIKRATDVMIAGKVAVVA 218
Query: 84  GYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNK 143
           GYG+VGKGC Q+L+G G  + ITEIDPI ALQA M+G+ V  ++E  +  +I VT TG  
Sbjct: 219 GYGDVGKGCAQALRGFGARVIITEIDPINALQAAMEGYEVTTMDEACKEGNIFVTTTGCV 278
Query: 144 NVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIVLL 203
           +++   H ++MK+  +VCN+GH + EIDV  L    +    ++ QVD  +  +G RI+LL
Sbjct: 279 DIILGRHFEQMKDDAIVCNIGHFDVEIDVKWLNENAVEKVNIKPQVDRYLLKNGHRIILL 338
Query: 204 AEGRLVNLSCS-SLPSFVVSITACTQALALIELFNAPSGRYKSDVYLLPKKMDEYVASLH 262
           AEGRLVNL C+   PSFV+S +   Q +A IEL+  P  +Y   V+ LPKK+DE VA  H
Sbjct: 339 AEGRLVNLGCAMGHPSFVMSNSFTNQVMAQIELWTHPD-KYPVGVHFLPKKLDEAVAEAH 397
Query: 263 LPTFDAHLTELSDEQAKYMGLNKAGPFKPSYY 294
           L   +  LT+L+++QA+Y+G+   GPFKP +Y
Sbjct: 398 LGKLNVKLTKLTEKQAQYLGMPINGPFKPDHY 429

>pdb|1XWF|A Chain A, K185n Mutated S-adenosylhomocysteine Hydrolase Length = 431

Iteration: 1
 Score =  132 bits (331), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 60/106 (56%), Positives = 80/106 (75%), Gaps = 2/106 (1%)
Query: 438 GLPVFAWRGETEEDFWWCIDKCVN--SWQPNMILDDGGDATHWMLKKYPTMFKAIKGIVE 495
           G+PVFAW+GET+E++ WCI++ ++      NMILDDGGD T+ +  K+P +   I+GI E
Sbjct: 95  GIPVFAWKGETDEEYLWCIEQTLHFKDGPLNMILDDGGDLTNLIHTKHPQLLSGIRGISE 154
Query: 496 ESLTGVHRLYQLSKAGKLTVPAMNVNDSVTKTKFDNLYMCRESIID 541
           E+ TGVH LY++   G L VPA+NVNDSVT +KFDNLY CRES+ID
Sbjct: 155 ETTTGVHNLYKMMANGILKVPAINVNDSVTNSKFDNLYGCRESLID 200

>pdb|3CE6|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis S-Adenosyl-L- Homocysteine Hydrolase In Ternary Complex With Nad And Adenosine Length = 494

Iteration: 1
 Score =  266 bits (681), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 131/273 (47%), Positives = 185/273 (67%), Gaps = 3/273 (1%)
Query: 24  GCTHINAQTAAGKLTVPAMNVNDSVTKTKFDNLYMCRESIIDSLKRSTDVMFGGKQVVLC 83
           G   +    AAG L  PA+NVNDSVTK+KFDN Y  R S+ID + R TD + GGK+V++C
Sbjct: 221 GVLRLYQFAAAGDLAFPAINVNDSVTKSKFDNKYGTRHSLIDGINRGTDALIGGKKVLIC 280
Query: 84  GYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNK 143
           GYG+VGKGC +++KG G  + +TEIDPI ALQA M+GF VV + E I   DIVVTATGNK
Sbjct: 281 GYGDVGKGCAEAMKGQGARVSVTEIDPINALQAMMEGFDVVTVEEAIGDADIVVTATGNK 340
Query: 144 NVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPD-GKRIVL 202
           +++  EH+  MK+  ++ N+GH + EID+  L     T   V+ QVD   + D G+ I++
Sbjct: 341 DIIMLEHIKAMKDHAILGNIGHFDNEIDMAGLERSGATRVNVKPQVDLWTFGDTGRSIIV 400
Query: 203 LAEGRLVNL-SCSSLPSFVVSITACTQALALIELFNAPSGRYKSDVYLLPKKMDEYVASL 261
           L+EGRL+NL + +  PSFV+S +   Q +A IEL+   +  Y ++VY LPK +DE VA +
Sbjct: 401 LSEGRLLNLGNATGHPSFVMSNSFANQTIAQIELWTK-NDEYDNEVYRLPKHLDEKVARI 459
Query: 262 HLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYY 294
           H+     HLT+L+ EQA+Y+G++  GP+KP +Y
Sbjct: 460 HVEALGGHLTKLTKEQAEYLGVDVEGPYKPDHY 492

>pdb|3CE6|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis S-Adenosyl-L- Homocysteine Hydrolase In Ternary Complex With Nad And Adenosine Length = 494

Iteration: 1
 Score =  110 bits (274), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 59/145 (40%), Positives = 79/145 (54%), Gaps = 41/145 (28%)
Query: 438 GLPVFAWRGETEEDFWWCIDKCVNSWQP----NMILDDGGDATHWMLK------------ 481
           G+PVFAW+GET E++WW  ++ +    P    NMILDDGGDAT  +L+            
Sbjct: 118 GVPVFAWKGETLEEYWWAAEQMLTWPDPDKPANMILDDGGDATMLVLRGMQYEKAGVVPP 177
Query: 482 -------------------------KYPTMFKAIKGIVEESLTGVHRLYQLSKAGKLTVP 516
                                    K+  + +++KG+ EE+ TGV RLYQ + AG L  P
Sbjct: 178 AEEDDPAEWKVFLNLLRTRFETDKDKWTKIAESVKGVTEETTTGVLRLYQFAAAGDLAFP 237
Query: 517 AMNVNDSVTKTKFDNLYMCRESIID 541
           A+NVNDSVTK+KFDN Y  R S+ID
Sbjct: 238 AINVNDSVTKSKFDNKYGTRHSLID 262

>pdb|3DHY|A Chain A, Crystal Structures Of Mycobacterium Tuberculosis S-Adenosyl- Homocysteine Hydrolase In Ternary Complex With Substrate An Inhibitors Length = 495

Iteration: 1
 Score =  266 bits (680), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 131/273 (47%), Positives = 185/273 (67%), Gaps = 3/273 (1%)
Query: 24  GCTHINAQTAAGKLTVPAMNVNDSVTKTKFDNLYMCRESIIDSLKRSTDVMFGGKQVVLC 83
           G   +    AAG L  PA+NVNDSVTK+KFDN Y  R S+ID + R TD + GGK+V++C
Sbjct: 222 GVLRLYQFAAAGDLAFPAINVNDSVTKSKFDNKYGTRHSLIDGINRGTDALIGGKKVLIC 281
Query: 84  GYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNK 143
           GYG+VGKGC +++KG G  + +TEIDPI ALQA M+GF VV + E I   DIVVTATGNK
Sbjct: 282 GYGDVGKGCAEAMKGQGARVSVTEIDPINALQAMMEGFDVVTVEEAIGDADIVVTATGNK 341
Query: 144 NVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPD-GKRIVL 202
           +++  EH+  MK+  ++ N+GH + EID+  L     T   V+ QVD   + D G+ I++
Sbjct: 342 DIIMLEHIKAMKDHAILGNIGHFDNEIDMAGLERSGATRVNVKPQVDLWTFGDTGRSIIV 401
Query: 203 LAEGRLVNL-SCSSLPSFVVSITACTQALALIELFNAPSGRYKSDVYLLPKKMDEYVASL 261
           L+EGRL+NL + +  PSFV+S +   Q +A IEL+   +  Y ++VY LPK +DE VA +
Sbjct: 402 LSEGRLLNLGNATGHPSFVMSNSFANQTIAQIELWTK-NDEYDNEVYRLPKHLDEKVARI 460
Query: 262 HLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYY 294
           H+     HLT+L+ EQA+Y+G++  GP+KP +Y
Sbjct: 461 HVEALGGHLTKLTKEQAEYLGVDVEGPYKPDHY 493

>pdb|3DHY|A Chain A, Crystal Structures Of Mycobacterium Tuberculosis S-Adenosyl- Homocysteine Hydrolase In Ternary Complex With Substrate An Inhibitors Length = 495

Iteration: 1
 Score =  110 bits (274), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 59/145 (40%), Positives = 79/145 (54%), Gaps = 41/145 (28%)
Query: 438 GLPVFAWRGETEEDFWWCIDKCVNSWQP----NMILDDGGDATHWMLK------------ 481
           G+PVFAW+GET E++WW  ++ +    P    NMILDDGGDAT  +L+            
Sbjct: 119 GVPVFAWKGETLEEYWWAAEQMLTWPDPDKPANMILDDGGDATMLVLRGMQYEKAGVVPP 178
Query: 482 -------------------------KYPTMFKAIKGIVEESLTGVHRLYQLSKAGKLTVP 516
                                    K+  + +++KG+ EE+ TGV RLYQ + AG L  P
Sbjct: 179 AEEDDPAEWKVFLNLLRTRFETDKDKWTKIAESVKGVTEETTTGVLRLYQFAAAGDLAFP 238
Query: 517 AMNVNDSVTKTKFDNLYMCRESIID 541
           A+NVNDSVTK+KFDN Y  R S+ID
Sbjct: 239 AINVNDSVTKSKFDNKYGTRHSLID 263

>pdb|1A7A|A Chain A, Structure Of Human Placental S-adenosylhomocysteine Hydrolase: Determination Of A 30 Selenium Atom Substructure From Data At A Single Wavelength Length = 432

Iteration: 1
 Score =  257 bits (657), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 131/272 (48%), Positives = 178/272 (65%), Gaps = 2/272 (0%)
Query: 24  GCTHINAQTAAGKLTVPAMNVNDSVTKTKFDNLYMCRESIIDSLKRSTDVMFGGKQVVLC 83
           G  ++    A G L VPA+NVNDSVTK+KFDNLY CRES+ID +KR+TDV   GK  V+ 
Sbjct: 160 GVHNLYKXXANGILKVPAINVNDSVTKSKFDNLYGCRESLIDGIKRATDVXIAGKVAVVA 219
Query: 84  GYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNK 143
           GYG+VGKGC Q+L+G G  + ITEIDPI ALQA  +G+ V   +E  +  +I VT TG  
Sbjct: 220 GYGDVGKGCAQALRGFGARVIITEIDPINALQAAXEGYEVTTXDEACQEGNIFVTTTGCI 279
Query: 144 NVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIVLL 203
           +++   H ++ K+  +VCN+GH + EIDV  L    +    ++ QVD     +G+RI+LL
Sbjct: 280 DIILGRHFEQXKDDAIVCNIGHFDVEIDVKWLNENAVEKVNIKPQVDRYRLKNGRRIILL 339
Query: 204 AEGRLVNLSCS-SLPSFVVSITACTQALALIELFNAPSGRYKSDVYLLPKKMDEYVASLH 262
           AEGRLVNL C+   PSFV S +   Q  A IEL+  P  +Y   V+ LPKK+DE VA  H
Sbjct: 340 AEGRLVNLGCAXGHPSFVXSNSFTNQVXAQIELWTHPD-KYPVGVHFLPKKLDEAVAEAH 398
Query: 263 LPTFDAHLTELSDEQAKYMGLNKAGPFKPSYY 294
           L   +  LT+L+++QA+Y+G +  GPFKP +Y
Sbjct: 399 LGKLNVKLTKLTEKQAQYLGXSCDGPFKPDHY 430

>pdb|1A7A|A Chain A, Structure Of Human Placental S-adenosylhomocysteine Hydrolase: Determination Of A 30 Selenium Atom Substructure From Data At A Single Wavelength Length = 432

Iteration: 1
 Score =  130 bits (326), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 60/106 (56%), Positives = 78/106 (73%), Gaps = 2/106 (1%)
Query: 438 GLPVFAWRGETEEDFWWCIDKCV--NSWQPNMILDDGGDATHWMLKKYPTMFKAIKGIVE 495
           G+PV+AW+GET+E++ WCI++ +       N ILDDGGD T+ +  KYP +   I+GI E
Sbjct: 96  GIPVYAWKGETDEEYLWCIEQTLYFKDGPLNXILDDGGDLTNLIHTKYPQLLPGIRGISE 155
Query: 496 ESLTGVHRLYQLSKAGKLTVPAMNVNDSVTKTKFDNLYMCRESIID 541
           E+ TGVH LY+    G L VPA+NVNDSVTK+KFDNLY CRES+ID
Sbjct: 156 ETTTGVHNLYKXXANGILKVPAINVNDSVTKSKFDNLYGCRESLID 201

>pdb|3G1U|A Chain A, Crystal Structure Of Leishmania Major S- Adenosylhomocysteine Hydrolase Length = 437

Iteration: 1
 Score =  256 bits (655), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 129/277 (46%), Positives = 184/277 (66%), Gaps = 6/277 (2%)
Query: 24  GCTHINAQTAAGKLTVPAMNVNDSVTKTKFDNLYMCRESIIDSLKRSTDVMFGGKQVVLC 83
           G  ++  + + G L + A+NVNDSVTK+KFDNLY CRES++D +KR+TDVM  GK   +C
Sbjct: 159 GVKNLYKRLSKGNLPISAINVNDSVTKSKFDNLYGCRESLVDGIKRATDVMIAGKTCCVC 218
Query: 84  GYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNK 143
           GYG+VGKGC  +L+  G  + +TE+DPI ALQA M+G+ V  + +V+    I VT TGN 
Sbjct: 219 GYGDVGKGCAAALRAFGARVVVTEVDPINALQASMEGYQVALVEDVMADAHIFVTTTGND 278
Query: 144 NVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIVLL 203
           +++T +H   M++  +VCN+GH +TEI V  L        +++ QVD     +G+ I+LL
Sbjct: 279 DIITSDHFPHMRDDAIVCNIGHFDTEIQVGWLEANAKEHVEIKPQVDRYTMENGRHIILL 338
Query: 204 AEGRLVNLSCSS-LPSFVVSITACTQALALIELF-NAPSGRY----KSDVYLLPKKMDEY 257
           A+GRLVNL C+S  PSFV+S +   Q LA IEL+ N  +G+Y    K+ V+ LPK +DE 
Sbjct: 339 AKGRLVNLGCASGHPSFVMSNSFTNQVLAQIELWSNRDNGKYPRGDKAGVFFLPKALDEK 398
Query: 258 VASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYY 294
           VA+LHL    A LT+L+ +QA+Y+     GPFKP +Y
Sbjct: 399 VAALHLAHVGAKLTKLTPKQAEYINCPVNGPFKPDHY 435

>pdb|3G1U|A Chain A, Crystal Structure Of Leishmania Major S- Adenosylhomocysteine Hydrolase Length = 437

Iteration: 1
 Score =  130 bits (326), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 60/109 (55%), Positives = 79/109 (72%), Gaps = 4/109 (3%)
Query: 437 TGLPVFAWRGETEEDFWWCIDKCVNSWQ----PNMILDDGGDATHWMLKKYPTMFKAIKG 492
           TG+PVFAW+GET+E++ WCI + V  +     PNMILDDGGD T+ ++ +YP +   I G
Sbjct: 92  TGVPVFAWKGETDEEYEWCIAQTVKGFSGDGLPNMILDDGGDLTNLVIDRYPELVPKIFG 151
Query: 493 IVEESLTGVHRLYQLSKAGKLTVPAMNVNDSVTKTKFDNLYMCRESIID 541
           I EE+ TGV  LY+    G L + A+NVNDSVTK+KFDNLY CRES++D
Sbjct: 152 ISEETTTGVKNLYKRLSKGNLPISAINVNDSVTKSKFDNLYGCRESLVD 200

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	542
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	1e-165
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	1e-60
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	2e-59
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	6e-12
3n58_A	464	Adenosylhomocysteinase; ssgcid, hydrolase, structu	1e-159
3n58_A	464	Adenosylhomocysteinase; ssgcid, hydrolase, structu	2e-53
3n58_A	464	Adenosylhomocysteinase; ssgcid, hydrolase, structu	3e-50
3n58_A	464	Adenosylhomocysteinase; ssgcid, hydrolase, structu	3e-10
3h9u_A	436	Adenosylhomocysteinase; NAD CO-factor complex, str	1e-159
3h9u_A	436	Adenosylhomocysteinase; NAD CO-factor complex, str	5e-59
3h9u_A	436	Adenosylhomocysteinase; NAD CO-factor complex, str	2e-56
3h9u_A	436	Adenosylhomocysteinase; NAD CO-factor complex, str	1e-11
3d64_A	494	Adenosylhomocysteinase; structural genomics, ssgci	1e-154
3d64_A	494	Adenosylhomocysteinase; structural genomics, ssgci	4e-53
3d64_A	494	Adenosylhomocysteinase; structural genomics, ssgci	4e-51
3d64_A	494	Adenosylhomocysteinase; structural genomics, ssgci	2e-10
1v8b_A	479	Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2	1e-154
1v8b_A	479	Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2	2e-54
1v8b_A	479	Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2	4e-48
1v8b_A	479	Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2	4e-10
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	1e-152
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	1e-52
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	5e-49
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	2e-10
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	1e-149
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	3e-53
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	3e-49
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	3e-11
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	7e-20
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	2e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	5e-05
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	1e-04
3oet_A	381	Erythronate-4-phosphate dehydrogenase; structural	2e-04
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	3e-04
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	7e-04
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	9e-04

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A* Length = 435

 Score =  473 bits (1220), Expect = e-165
 Identities = 219/268 (81%), Positives = 245/268 (91%)

Query: 24  GCTHINAQTAAGKLTVPAMNVNDSVTKTKFDNLYMCRESIIDSLKRSTDVMFGGKQVVLC 83
           G   +   + AGKL VPAMNVNDSVTK KFDNLY CRESI+D LKR+TD+MFGGKQVV+C
Sbjct: 167 GVHRLYQLSKAGKLCVPAMNVNDSVTKQKFDNLYCCRESILDGLKRTTDMMFGGKQVVVC 226

Query: 84  GYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNK 143
           GYGEVGKGCC +LK +G ++Y+TEIDPICALQACMDGF +VKLNEVIR VDIV+T TGNK
Sbjct: 227 GYGEVGKGCCAALKAMGSIVYVTEIDPICALQACMDGFRLVKLNEVIRQVDIVITCTGNK 286

Query: 144 NVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIVLL 203
           NVVTREH+D+MKN C+VCNMGHSNTEIDV SLRTP+LTWE+VRSQVDHVIWPDGKRIVLL
Sbjct: 287 NVVTREHLDRMKNSCIVCNMGHSNTEIDVASLRTPELTWERVRSQVDHVIWPDGKRIVLL 346

Query: 204 AEGRLVNLSCSSLPSFVVSITACTQALALIELFNAPSGRYKSDVYLLPKKMDEYVASLHL 263
           AEGRL+NLSCS++P+FV+SITA TQALALIEL+NAP GRYK DVYLLPKKMDEYVASLHL
Sbjct: 347 AEGRLLNLSCSTVPTFVLSITATTQALALIELYNAPEGRYKQDVYLLPKKMDEYVASLHL 406

Query: 264 PTFDAHLTELSDEQAKYMGLNKAGPFKP 291
           PTFDAHLTEL+DEQAKY+GLNK GPFKP
Sbjct: 407 PTFDAHLTELTDEQAKYLGLNKNGPFKP 434

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A* Length = 435

 Score =  205 bits (524), Expect = 1e-60
 Identities = 88/107 (82%), Positives = 96/107 (89%), Gaps = 2/107 (1%)

Query: 437 TGLPVFAWRGETEEDFWWCIDKCVNS--WQPNMILDDGGDATHWMLKKYPTMFKAIKGIV 494
           +G PVFAW+GE+E+DFWWCID+CVN   WQPNMILDDGGD THW+ KKYP MFK IKGIV
Sbjct: 102 SGFPVFAWKGESEDDFWWCIDRCVNVEGWQPNMILDDGGDLTHWIYKKYPNMFKKIKGIV 161

Query: 495 EESLTGVHRLYQLSKAGKLTVPAMNVNDSVTKTKFDNLYMCRESIID 541
           EES+TGVHRLYQLSKAGKL VPAMNVNDSVTK KFDNLY CRESI+D
Sbjct: 162 EESVTGVHRLYQLSKAGKLCVPAMNVNDSVTKQKFDNLYCCRESILD 208

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A* Length = 435

 Score =  202 bits (516), Expect = 2e-59
 Identities = 93/112 (83%), Positives = 105/112 (93%)

Query: 295 SMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLR 354
            MDGF +VKLNEVIR VDIV+T TGNKNVVTREH+D+MKN C+VCNMGHSNTEIDV SLR
Sbjct: 260 CMDGFRLVKLNEVIRQVDIVITCTGNKNVVTREHLDRMKNSCIVCNMGHSNTEIDVASLR 319

Query: 355 TPDLTWEKVRSQVDHVIWPDGKRIVLLAEGRLVNLSCSSLPSFVVSITACTQ 406
           TP+LTWE+VRSQVDHVIWPDGKRIVLLAEGRL+NLSCS++P+FV+SITA TQ
Sbjct: 320 TPELTWERVRSQVDHVIWPDGKRIVLLAEGRLLNLSCSTVPTFVLSITATTQ 371

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A* Length = 435

 Score = 66.5 bits (163), Expect = 6e-12
 Identities = 24/33 (72%), Positives = 27/33 (81%)

Query: 1  MPGIMALRKRAGDDKPLKNARIVGCTHINAQTA 33
          MP +MALRKRA  +KPL  A+IVGCTHI AQTA
Sbjct: 36 MPALMALRKRAQGEKPLAGAKIVGCTHITAQTA 68

>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus} Length = 464

 Score =  461 bits (1187), Expect = e-159
 Identities = 146/272 (53%), Positives = 189/272 (69%), Gaps = 4/272 (1%)

Query: 24  GCTHINAQTAAGKLTVPAMNVNDSVTKTKFDNLYMCRESIIDSLKRSTDVMFGGKQVVLC 83
           G   +      G L  PA+NVNDSVTK+KFDN Y C+ES++D ++R TDVM  GK  V+C
Sbjct: 194 GVNRLYQLQKKGLLPFPAINVNDSVTKSKFDNKYGCKESLVDGIRRGTDVMMAGKVAVVC 253

Query: 84  GYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNK 143
           GYG+VGKG  QSL G G  + +TE+DPICALQA MDGF VV L++   T DIVVT TGNK
Sbjct: 254 GYGDVGKGSAQSLAGAGARVKVTEVDPICALQAAMDGFEVVTLDDAASTADIVVTTTGNK 313

Query: 144 NVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIVLL 203
           +V+T +HM KMK+ C+V N+GH + EI V +LR  +L W  V+ QVD + +PDGKR++LL
Sbjct: 314 DVITIDHMRKMKDMCIVGNIGHFDNEIQVAALR--NLKWTNVKPQVDLIEFPDGKRLILL 371

Query: 204 AEGRLVNLSCSS-LPSFVVSITACTQALALIELFNAPSGRYKSDVYLLPKKMDEYVASLH 262
           +EGRL+NL  ++  PSFV+S +   Q L  IELF      YK++VY+LPK +DE VA LH
Sbjct: 372 SEGRLLNLGNATGHPSFVMSASFTNQVLGQIELFTRT-DAYKNEVYVLPKHLDEKVARLH 430

Query: 263 LPTFDAHLTELSDEQAKYMGLNKAGPFKPSYY 294
           L    A LT LS+EQA Y+G+   GPFK  +Y
Sbjct: 431 LDKLGAKLTVLSEEQAAYIGVTPQGPFKSEHY 462

>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus} Length = 464

 Score =  187 bits (476), Expect = 2e-53
 Identities = 59/113 (52%), Positives = 82/113 (72%), Gaps = 3/113 (2%)

Query: 295 SMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLR 354
           +MDGF VV L++   T DIVVT TGNK+V+T +HM KMK+ C+V N+GH + EI V +LR
Sbjct: 287 AMDGFEVVTLDDAASTADIVVTTTGNKDVITIDHMRKMKDMCIVGNIGHFDNEIQVAALR 346

Query: 355 TPDLTWEKVRSQVDHVIWPDGKRIVLLAEGRLVNLSCSS-LPSFVVSITACTQ 406
             +L W  V+ QVD + +PDGKR++LL+EGRL+NL  ++  PSFV+S +   Q
Sbjct: 347 --NLKWTNVKPQVDLIEFPDGKRLILLSEGRLLNLGNATGHPSFVMSASFTNQ 397

>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus} Length = 464

 Score =  178 bits (453), Expect = 3e-50
 Identities = 60/143 (41%), Positives = 76/143 (53%), Gaps = 38/143 (26%)

Query: 437 TGLPVFAWRGETEEDFWWCIDKCV---NSWQPNMILDDGGDATHWMLK------------ 481
           TG PVFA +GET E++W   D+     +    NMILDDGGDAT ++L             
Sbjct: 93  TGTPVFAVKGETLEEYWTYTDQIFQWPDGEPSNMILDDGGDATMYILIGARAEAGEDVLS 152

Query: 482 -----------------------KYPTMFKAIKGIVEESLTGVHRLYQLSKAGKLTVPAM 518
                                   +     AIKG+ EE+ TGV+RLYQL K G L  PA+
Sbjct: 153 NPQSEEEEVLFAQIKKRMAATPGFFTKQRAAIKGVTEETTTGVNRLYQLQKKGLLPFPAI 212

Query: 519 NVNDSVTKTKFDNLYMCRESIID 541
           NVNDSVTK+KFDN Y C+ES++D
Sbjct: 213 NVNDSVTKSKFDNKYGCKESLVD 235

>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus} Length = 464

 Score = 61.2 bits (149), Expect = 3e-10
 Identities = 18/34 (52%), Positives = 22/34 (64%)

Query: 1  MPGIMALRKRAGDDKPLKNARIVGCTHINAQTAA 34
          MPG+MA R+  G  +PLK ARI G  H+  QTA 
Sbjct: 27 MPGLMAAREEFGKSQPLKGARISGSLHMTIQTAV 60

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A* Length = 436

 Score =  459 bits (1182), Expect = e-159
 Identities = 140/277 (50%), Positives = 192/277 (69%), Gaps = 6/277 (2%)

Query: 24  GCTHINAQTAAGKLTVPAMNVNDSVTKTKFDNLYMCRESIIDSLKRSTDVMFGGKQVVLC 83
           G  ++  +   GKLT+PAMNVNDSVTK+KFDNLY CRES++D +KR+TDVM  GK   +C
Sbjct: 158 GVKNLYKRLQRGKLTIPAMNVNDSVTKSKFDNLYGCRESLVDGIKRATDVMIAGKTACVC 217

Query: 84  GYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNK 143
           GYG+VGKGC  +L+G G  + +TE+DPI ALQA M+G+ V+ + +V+    I VT TGN 
Sbjct: 218 GYGDVGKGCAAALRGFGARVVVTEVDPINALQAAMEGYQVLLVEDVVEEAHIFVTTTGND 277

Query: 144 NVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIVLL 203
           +++T EH  +M++  +VCN+GH +TEI V  L+       +V+ QVD     +G+ I+LL
Sbjct: 278 DIITSEHFPRMRDDAIVCNIGHFDTEIQVAWLKANAKERVEVKPQVDRYTMANGRHIILL 337

Query: 204 AEGRLVNLSCSSL-PSFVVSITACTQALALIELF-NAPSGRY----KSDVYLLPKKMDEY 257
           AEGRLVNL C+S  PSFV+S + C Q LA IEL+ N  +G+Y    K+ VY LPKK+DE 
Sbjct: 338 AEGRLVNLGCASGHPSFVMSNSFCNQVLAQIELWTNRDTGKYPRGAKAQVYFLPKKLDEK 397

Query: 258 VASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYY 294
           VA+LHL    A LT+L+ +QA+Y+     GPFKP +Y
Sbjct: 398 VAALHLGKLGAKLTKLTPKQAEYINCPVDGPFKPDHY 434

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A* Length = 436

 Score =  201 bits (513), Expect = 5e-59
 Identities = 59/109 (54%), Positives = 80/109 (73%), Gaps = 4/109 (3%)

Query: 437 TGLPVFAWRGETEEDFWWCIDKCVNS----WQPNMILDDGGDATHWMLKKYPTMFKAIKG 492
            G+PVFAW+GETEE++ WC+ + +        PNM+LDDGGD T+++L +   +   I G
Sbjct: 91  RGIPVFAWKGETEEEYMWCMKQTLKGFSGDGYPNMLLDDGGDLTNYVLDECKELDGKIYG 150

Query: 493 IVEESLTGVHRLYQLSKAGKLTVPAMNVNDSVTKTKFDNLYMCRESIID 541
           + EE+ TGV  LY+  + GKLT+PAMNVNDSVTK+KFDNLY CRES++D
Sbjct: 151 VSEETTTGVKNLYKRLQRGKLTIPAMNVNDSVTKSKFDNLYGCRESLVD 199

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A* Length = 436

 Score =  194 bits (495), Expect = 2e-56
 Identities = 49/113 (43%), Positives = 74/113 (65%), Gaps = 1/113 (0%)

Query: 295 SMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLR 354
           +M+G+ V+ + +V+    I VT TGN +++T EH  +M++  +VCN+GH +TEI V  L+
Sbjct: 251 AMEGYQVLLVEDVVEEAHIFVTTTGNDDIITSEHFPRMRDDAIVCNIGHFDTEIQVAWLK 310

Query: 355 TPDLTWEKVRSQVDHVIWPDGKRIVLLAEGRLVNLSCSSL-PSFVVSITACTQ 406
                  +V+ QVD     +G+ I+LLAEGRLVNL C+S  PSFV+S + C Q
Sbjct: 311 ANAKERVEVKPQVDRYTMANGRHIILLAEGRLVNLGCASGHPSFVMSNSFCNQ 363

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A* Length = 436

 Score = 65.7 bits (161), Expect = 1e-11
 Identities = 19/33 (57%), Positives = 23/33 (69%)

Query: 1  MPGIMALRKRAGDDKPLKNARIVGCTHINAQTA 33
          MPG+M LR+  G  KPLK A+I GC H+  QTA
Sbjct: 25 MPGLMELRREYGPSKPLKGAKIAGCLHMTMQTA 57

>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A* Length = 494

 Score =  449 bits (1157), Expect = e-154
 Identities = 152/272 (55%), Positives = 196/272 (72%), Gaps = 4/272 (1%)

Query: 24  GCTHINAQTAAGKLTVPAMNVNDSVTKTKFDNLYMCRESIIDSLKRSTDVMFGGKQVVLC 83
           G   +      G+L  PA NVNDSVTK+KFDNLY CRES++D +KR+TDVM  GK  V+ 
Sbjct: 224 GVHRLYQMEKDGRLPFPAFNVNDSVTKSKFDNLYGCRESLVDGIKRATDVMIAGKIAVVA 283

Query: 84  GYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNK 143
           GYG+VGKGC QSL+GLG  +++TEIDPICALQA M+G+ VV +       DI VTATGN 
Sbjct: 284 GYGDVGKGCAQSLRGLGATVWVTEIDPICALQAAMEGYRVVTMEYAADKADIFVTATGNY 343

Query: 144 NVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIVLL 203
           +V+  +HM  M++  +VCN+GH ++EIDV S R     WE ++ QVDH+I+PDGKR++LL
Sbjct: 344 HVINHDHMKAMRHNAIVCNIGHFDSEIDVASTR--QYQWENIKPQVDHIIFPDGKRVILL 401

Query: 204 AEGRLVNLSCSS-LPSFVVSITACTQALALIELFNAPSGRYKSDVYLLPKKMDEYVASLH 262
           AEGRLVNL C++  PSFV+S +   Q LA IELF    G Y + VY+LPK +DE VA LH
Sbjct: 402 AEGRLVNLGCATGHPSFVMSNSFTNQTLAQIELFTRG-GEYANKVYVLPKHLDEKVARLH 460

Query: 263 LPTFDAHLTELSDEQAKYMGLNKAGPFKPSYY 294
           L    A L+ELSD+QA Y+G++KAGPFKP +Y
Sbjct: 461 LARIGAQLSELSDDQAAYIGVSKAGPFKPDHY 492

>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A* Length = 494

 Score =  186 bits (475), Expect = 4e-53
 Identities = 57/120 (47%), Positives = 80/120 (66%), Gaps = 3/120 (2%)

Query: 288 PFKPSYYSMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTE 347
           P      +M+G+ VV +       DI VTATGN +V+  +HM  M++  +VCN+GH ++E
Sbjct: 310 PICALQAAMEGYRVVTMEYAADKADIFVTATGNYHVINHDHMKAMRHNAIVCNIGHFDSE 369

Query: 348 IDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIVLLAEGRLVNLSCSS-LPSFVVSITACTQ 406
           IDV S R     WE ++ QVDH+I+PDGKR++LLAEGRLVNL C++  PSFV+S +   Q
Sbjct: 370 IDVASTR--QYQWENIKPQVDHIIFPDGKRVILLAEGRLVNLGCATGHPSFVMSNSFTNQ 427

>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A* Length = 494

 Score =  181 bits (461), Expect = 4e-51
 Identities = 58/143 (40%), Positives = 74/143 (51%), Gaps = 38/143 (26%)

Query: 437 TGLPVFAWRGETEEDFWWCIDKCV---NSWQPNMILDDGGDATHWMLK------------ 481
            G PVFA++GE+ +++W    +     N    NMILDDGGDAT  ++             
Sbjct: 123 AGTPVFAFKGESLDEYWEFSHRIFEWPNGEFANMILDDGGDATLLLILGSKAEKDRSVIA 182

Query: 482 -----------------------KYPTMFKAIKGIVEESLTGVHRLYQLSKAGKLTVPAM 518
                                   Y      IKG+ EE+ TGVHRLYQ+ K G+L  PA 
Sbjct: 183 RPTNEEEVALFKSIERHLEIDGSWYSKRLAHIKGVTEETTTGVHRLYQMEKDGRLPFPAF 242

Query: 519 NVNDSVTKTKFDNLYMCRESIID 541
           NVNDSVTK+KFDNLY CRES++D
Sbjct: 243 NVNDSVTKSKFDNLYGCRESLVD 265

>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A* Length = 494

 Score = 61.7 bits (150), Expect = 2e-10
 Identities = 16/42 (38%), Positives = 23/42 (54%)

Query: 1  MPGIMALRKRAGDDKPLKNARIVGCTHINAQTAAGKLTVPAM 42
          MPG++ +R      +PLK ARI G  H+  QT     T+ A+
Sbjct: 57 MPGLVQIRDEYKAQQPLKGARIAGSLHMTIQTGVLIETLKAL 98

>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3 Length = 479

 Score =  448 bits (1155), Expect = e-154
 Identities = 134/274 (48%), Positives = 187/274 (68%), Gaps = 3/274 (1%)

Query: 24  GCTHINAQTAAGKLTVPAMNVNDSVTKTKFDNLYMCRESIIDSLKRSTDVMFGGKQVVLC 83
           G   +       +L   A+NVND+VTK K+DN+Y CR S+ D L R+TD +  GK VV+C
Sbjct: 204 GVLRLKKMDKQNELLFTAINVNDAVTKQKYDNVYGCRHSLPDGLMRATDFLISGKIVVIC 263

Query: 84  GYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNK 143
           GYG+VGKGC  S+KGLG  +YITEIDPICA+QA M+GF+VV L+E++   D  +T TGN 
Sbjct: 264 GYGDVGKGCASSMKGLGARVYITEIDPICAIQAVMEGFNVVTLDEIVDKGDFFITCTGNV 323

Query: 144 NVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLR-TPDLTWEKVRSQVDHVIWPDGKRIVL 202
           +V+  EH+ KMKN  VV N+GH + EI VN L     +  E V+ QVD +  P+G +I++
Sbjct: 324 DVIKLEHLLKMKNNAVVGNIGHFDDEIQVNELFNYKGIHIENVKPQVDRITLPNGNKIIV 383

Query: 203 LAEGRLVNLSCSS-LPSFVVSITACTQALALIELF-NAPSGRYKSDVYLLPKKMDEYVAS 260
           LA GRL+NL C++  P+FV+S + C Q  A ++L+ N  + +Y++ VYLLPK +DE VA 
Sbjct: 384 LARGRLLNLGCATGHPAFVMSFSFCNQTFAQLDLWQNKDTNKYENKVYLLPKHLDEKVAL 443

Query: 261 LHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYY 294
            HL   +A LTEL D Q +++G+NK+GPFK + Y
Sbjct: 444 YHLKKLNASLTELDDNQCQFLGVNKSGPFKSNEY 477

>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3 Length = 479

 Score =  190 bits (483), Expect = 2e-54
 Identities = 52/121 (42%), Positives = 76/121 (62%), Gaps = 2/121 (1%)

Query: 288 PFKPSYYSMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTE 347
           P       M+GF+VV L+E++   D  +T TGN +V+  EH+ KMKN  VV N+GH + E
Sbjct: 290 PICAIQAVMEGFNVVTLDEIVDKGDFFITCTGNVDVIKLEHLLKMKNNAVVGNIGHFDDE 349

Query: 348 IDVNSLR-TPDLTWEKVRSQVDHVIWPDGKRIVLLAEGRLVNLSCSS-LPSFVVSITACT 405
           I VN L     +  E V+ QVD +  P+G +I++LA GRL+NL C++  P+FV+S + C 
Sbjct: 350 IQVNELFNYKGIHIENVKPQVDRITLPNGNKIIVLARGRLLNLGCATGHPAFVMSFSFCN 409

Query: 406 Q 406
           Q
Sbjct: 410 Q 410

>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3 Length = 479

 Score =  173 bits (439), Expect = 4e-48
 Identities = 50/151 (33%), Positives = 72/151 (47%), Gaps = 46/151 (30%)

Query: 437 TGLPVFAWRGETEEDFWWCIDKCVN-----SWQPNMILDDGGDATHWMLK---------- 481
             + VFAW+ ET E++WWC++  +         P+MI+DDGGDAT  + K          
Sbjct: 95  ENVTVFAWKNETLEEYWWCVESALTWGDGDDNGPDMIVDDGGDATLLVHKGVEYEKLYEE 154

Query: 482 -------------------------------KYPTMFKAIKGIVEESLTGVHRLYQLSKA 510
                                          K+  + K I G+ EE+ TGV RL ++ K 
Sbjct: 155 KNILPDPEKAKNEEERCFLTLLKNSILKNPKKWTNIAKKIIGVSEETTTGVLRLKKMDKQ 214

Query: 511 GKLTVPAMNVNDSVTKTKFDNLYMCRESIID 541
            +L   A+NVND+VTK K+DN+Y CR S+ D
Sbjct: 215 NELLFTAINVNDAVTKQKYDNVYGCRHSLPD 245

>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3 Length = 479

 Score = 61.0 bits (148), Expect = 4e-10
 Identities = 18/42 (42%), Positives = 27/42 (64%)

Query: 1  MPGIMALRKRAGDDKPLKNARIVGCTHINAQTAAGKLTVPAM 42
          MPG+M +R+  G D+PLKNA+I GC H+  + A    T+  +
Sbjct: 28 MPGLMRIREEYGKDQPLKNAKITGCLHMTVECALLIETLQKL 69

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A* Length = 494

 Score =  443 bits (1142), Expect = e-152
 Identities = 131/273 (47%), Positives = 184/273 (67%), Gaps = 3/273 (1%)

Query: 24  GCTHINAQTAAGKLTVPAMNVNDSVTKTKFDNLYMCRESIIDSLKRSTDVMFGGKQVVLC 83
           G   +    AAG L  PA+NVNDSVTK+KFDN Y  R S+ID + R TD + GGK+V++C
Sbjct: 221 GVLRLYQFAAAGDLAFPAINVNDSVTKSKFDNKYGTRHSLIDGINRGTDALIGGKKVLIC 280

Query: 84  GYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNK 143
           GYG+VGKGC +++KG G  + +TEIDPI ALQA M+GF VV + E I   DIVVTATGNK
Sbjct: 281 GYGDVGKGCAEAMKGQGARVSVTEIDPINALQAMMEGFDVVTVEEAIGDADIVVTATGNK 340

Query: 144 NVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPD-GKRIVL 202
           +++  EH+  MK+  ++ N+GH + EID+  L     T   V+ QVD   + D G+ I++
Sbjct: 341 DIIMLEHIKAMKDHAILGNIGHFDNEIDMAGLERSGATRVNVKPQVDLWTFGDTGRSIIV 400

Query: 203 LAEGRLVNLSCSS-LPSFVVSITACTQALALIELFNAPSGRYKSDVYLLPKKMDEYVASL 261
           L+EGRL+NL  ++  PSFV+S +   Q +A IEL+      Y ++VY LPK +DE VA +
Sbjct: 401 LSEGRLLNLGNATGHPSFVMSNSFANQTIAQIELWTKN-DEYDNEVYRLPKHLDEKVARI 459

Query: 262 HLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYY 294
           H+     HLT+L+ EQA+Y+G++  GP+KP +Y
Sbjct: 460 HVEALGGHLTKLTKEQAEYLGVDVEGPYKPDHY 492

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A* Length = 494

 Score =  185 bits (472), Expect = 1e-52
 Identities = 49/114 (42%), Positives = 72/114 (63%), Gaps = 2/114 (1%)

Query: 295 SMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLR 354
            M+GF VV + E I   DIVVTATGNK+++  EH+  MK+  ++ N+GH + EID+  L 
Sbjct: 314 MMEGFDVVTVEEAIGDADIVVTATGNKDIIMLEHIKAMKDHAILGNIGHFDNEIDMAGLE 373

Query: 355 TPDLTWEKVRSQVDHVIWPD-GKRIVLLAEGRLVNLSCSS-LPSFVVSITACTQ 406
               T   V+ QVD   + D G+ I++L+EGRL+NL  ++  PSFV+S +   Q
Sbjct: 374 RSGATRVNVKPQVDLWTFGDTGRSIIVLSEGRLLNLGNATGHPSFVMSNSFANQ 427

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A* Length = 494

 Score =  175 bits (446), Expect = 5e-49
 Identities = 58/146 (39%), Positives = 78/146 (53%), Gaps = 41/146 (28%)

Query: 437 TGLPVFAWRGETEEDFWWCIDKCVN----SWQPNMILDDGGDATHWMLK----------- 481
            G+PVFAW+GET E++WW  ++ +         NMILDDGGDAT  +L+           
Sbjct: 117 KGVPVFAWKGETLEEYWWAAEQMLTWPDPDKPANMILDDGGDATMLVLRGMQYEKAGVVP 176

Query: 482 --------------------------KYPTMFKAIKGIVEESLTGVHRLYQLSKAGKLTV 515
                                     K+  + +++KG+ EE+ TGV RLYQ + AG L  
Sbjct: 177 PAEEDDPAEWKVFLNLLRTRFETDKDKWTKIAESVKGVTEETTTGVLRLYQFAAAGDLAF 236

Query: 516 PAMNVNDSVTKTKFDNLYMCRESIID 541
           PA+NVNDSVTK+KFDN Y  R S+ID
Sbjct: 237 PAINVNDSVTKSKFDNKYGTRHSLID 262

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A* Length = 494

 Score = 62.1 bits (151), Expect = 2e-10
 Identities = 19/42 (45%), Positives = 27/42 (64%)

Query: 1  MPGIMALRKRAGDDKPLKNARIVGCTHINAQTAAGKLTVPAM 42
          MPG+M+LR+   + +PLK ARI G  H+  QTA    T+ A+
Sbjct: 42 MPGLMSLRREYAEVQPLKGARISGSLHMTVQTAVLIETLTAL 83

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A* Length = 488

 Score =  436 bits (1122), Expect = e-149
 Identities = 136/275 (49%), Positives = 185/275 (67%), Gaps = 4/275 (1%)

Query: 24  GCTHINAQTAAGKLTVPAMNVNDSVTKTKFDNLYMCRESIIDSLKRSTDVMFGGKQVVLC 83
           G   +    A G L  PA+NVNDSVTK+KFDNLY CR S+ D L R+TDVM  GK  V+ 
Sbjct: 212 GVKRLYQMQANGTLLFPAINVNDSVTKSKFDNLYGCRHSLPDGLMRATDVMIAGKVAVVA 271

Query: 84  GYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNK 143
           GYG+VGKGC  +LK  G  + +TEIDPICALQA M+G  V+ L +V+   DI VT TGNK
Sbjct: 272 GYGDVGKGCAAALKQAGARVIVTEIDPICALQATMEGLQVLTLEDVVSEADIFVTTTGNK 331

Query: 144 NVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRT-PDLTWEKVRSQVDHVIWPDGKR-IV 201
           +++  +HM KMKN  +VCN+GH + EID+  L T P +    ++ Q D  ++P+    I+
Sbjct: 332 DIIMLDHMKKMKNNAIVCNIGHFDNEIDMLGLETHPGVKRITIKPQTDRWVFPETNTGII 391

Query: 202 LLAEGRLVNLSCSS-LPSFVVSITACTQALALIELFN-APSGRYKSDVYLLPKKMDEYVA 259
           +LAEGRL+NL C++  PSFV+S +   Q +A +EL+N   SG+Y+  VY+LPK +DE VA
Sbjct: 392 ILAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWNEKSSGKYEKKVYVLPKHLDEKVA 451

Query: 260 SLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYY 294
           +LHL    A LT+LS +QA Y+ +   GP+KP +Y
Sbjct: 452 ALHLEKLGAKLTKLSKDQADYISVPVEGPYKPFHY 486

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A* Length = 488

 Score =  187 bits (476), Expect = 3e-53
 Identities = 50/129 (38%), Positives = 79/129 (61%), Gaps = 3/129 (2%)

Query: 281 MGLNKAGPFKPSYYSMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCN 340
           + + +  P      +M+G  V+ L +V+   DI VT TGNK+++  +HM KMKN  +VCN
Sbjct: 291 VIVTEIDPICALQATMEGLQVLTLEDVVSEADIFVTTTGNKDIIMLDHMKKMKNNAIVCN 350

Query: 341 MGHSNTEIDVNSLRT-PDLTWEKVRSQVDHVIWPDGKR-IVLLAEGRLVNLSCSS-LPSF 397
           +GH + EID+  L T P +    ++ Q D  ++P+    I++LAEGRL+NL C++  PSF
Sbjct: 351 IGHFDNEIDMLGLETHPGVKRITIKPQTDRWVFPETNTGIIILAEGRLMNLGCATGHPSF 410

Query: 398 VVSITACTQ 406
           V+S +   Q
Sbjct: 411 VMSCSFTNQ 419

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A* Length = 488

 Score =  176 bits (448), Expect = 3e-49
 Identities = 52/149 (34%), Positives = 72/149 (48%), Gaps = 44/149 (29%)

Query: 437 TGLPVFAWRGETEEDFWWCIDKCV---NSWQPNMILDDGGDATHWMLK------------ 481
               VFAW+GET +++WWC ++ +       P++I+DDGGD T  + +            
Sbjct: 105 DSAAVFAWKGETLQEYWWCTERALDWGPGGGPDLIVDDGGDTTLLIHEGVKAEEIYEKSG 164

Query: 482 -----------------------------KYPTMFKAIKGIVEESLTGVHRLYQLSKAGK 512
                                        +Y  M   + G+ EE+ TGV RLYQ+   G 
Sbjct: 165 QFPDPDSTDNAEFKIVLSIIKEGLKTDPKRYHKMKDRVVGVSEETTTGVKRLYQMQANGT 224

Query: 513 LTVPAMNVNDSVTKTKFDNLYMCRESIID 541
           L  PA+NVNDSVTK+KFDNLY CR S+ D
Sbjct: 225 LLFPAINVNDSVTKSKFDNLYGCRHSLPD 253

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A* Length = 488

 Score = 64.4 bits (157), Expect = 3e-11
 Identities = 18/42 (42%), Positives = 24/42 (57%)

Query: 1  MPGIMALRKRAGDDKPLKNARIVGCTHINAQTAAGKLTVPAM 42
          MPG+MA R   G  +P K A+I G  H+  QTA    T+ A+
Sbjct: 39 MPGLMASRSEFGPSQPFKGAKITGSLHMTIQTAVLIETLTAL 80

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} Length = 293

 Score = 89.2 bits (221), Expect = 7e-20
 Identities = 27/141 (19%), Positives = 48/141 (34%), Gaps = 7/141 (4%)

Query: 27  HINAQTAAGKLTVPAMNVNDSVTKTKFDNLYMCRESIIDSLKRSTDVMFGGKQVVLCGYG 86
           ++N        T+  +   D +      N     E  I    + TD    G  V + G G
Sbjct: 108 YLNQCMKKTNRTLVKLMERDDIA---IYNSIPTAEGTIMMAIQHTDFTIHGANVAVLGLG 164

Query: 87  EVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVV---KLNEVIRTVDIVVTATGNK 143
            VG    +    LG  + +   +     +    G       K  + +R VD+ +  T   
Sbjct: 165 RVGMSVARKFAALGAKVKVGARESDLLARIAEMGMEPFHISKAAQELRDVDVCIN-TIPA 223

Query: 144 NVVTREHMDKMKNGCVVCNMG 164
            VVT   + +M +   V ++ 
Sbjct: 224 LVVTANVLAEMPSHTFVIDLA 244

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis} Length = 300

 Score = 51.7 bits (124), Expect = 2e-07
 Identities = 18/109 (16%), Positives = 37/109 (33%), Gaps = 4/109 (3%)

Query: 55  NLYMCRESIIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICAL 114
           N     E  I    + TD    G QV + G G  G    ++   LG  + +         
Sbjct: 135 NSIPTVEGTIMLAIQHTDYTIHGSQVAVLGLGRTGMTIARTFAALGANVKVGARSSAHLA 194

Query: 115 QACMDGFSVVKLN---EVIRTVDIVVTATGNKNVVTREHMDKMKNGCVV 160
           +    G      +   E ++ +DI +    +  ++ +  +  M    ++
Sbjct: 195 RITEMGLVPFHTDELKEHVKDIDICINTIPSM-ILNQTVLSSMTPKTLI 242

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.9 bits (118), Expect = 2e-06
 Identities = 64/504 (12%), Positives = 145/504 (28%), Gaps = 157/504 (31%)

Query: 43  NVNDSVTKTKFDNLYMCRESIIDSLKRSTDVMFGGKQVVLCGYGEVGKGC-----CQSLK 97
           N N    K       + R      L+++   +   K V++ G    GK       C S K
Sbjct: 121 NDNQVFAK-----YNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYK 175

Query: 98  GLGC----VIYIT-------------------EIDPICALQACMDGFSVVKL--NEVIRT 132
                   + ++                    +IDP     +  D  S +KL  + +   
Sbjct: 176 VQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDP--NWTSRSDHSSNIKLRIHSIQAE 233

Query: 133 VDIVVTATGNK-------NVVTREHMDKMKNGC--VVCNMGHSNTEIDVNSLRTPDLTWE 183
           +  ++ +   +       NV   +  +     C  ++       T+  +++  T  ++ +
Sbjct: 234 LRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDF-LSAATTTHISLD 292

Query: 184 KVRSQVDHVIWPDGKRIVLLAEGRLVNLSCSSLPSFVVSITACTQALALI--ELFNAPS- 240
                +      + K   LL   + ++     LP  V++     + L++I   + +  + 
Sbjct: 293 HHSMTLTP---DEVKS--LLL--KYLDCRPQDLPREVLTTNP--RRLSIIAESIRDGLAT 343

Query: 241 -GRYKSDVYLLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYYSMDGF 299
              +K   ++   K+            ++ L  L   +           ++  +      
Sbjct: 344 WDNWK---HVNCDKLTT--------IIESSLNVLEPAE-----------YRKMFDR---L 378

Query: 300 SVVKLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLT 359
           SV   +  I T+ + +             ++K+    +V            +++  P + 
Sbjct: 379 SVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLV--EKQPKE----STISIPSIY 432

Query: 360 WEKVRSQVD-----HVIWPDGKRIVLLAEGRLVNLSCSSLPSFVVSITACTQRDKSSLIP 414
            E ++ +++     H      + IV             ++P            D   LIP
Sbjct: 433 LE-LKVKLENEYALH------RSIV----------DHYNIPK---------TFDSDDLIP 466

Query: 415 C-----------YHLRFASNLAKYLLNSLTSSYTGLPVFAWRGETEEDFWWCIDK----C 459
                       +HL+   +  +  L      +              DF +   K     
Sbjct: 467 PYLDQYFYSHIGHHLKNIEHPERMTL--FRMVFL-------------DFRFLEQKIRHDS 511

Query: 460 VNSWQPNMILDDGGDATHWMLKKY 483
                   IL+         LK Y
Sbjct: 512 TAWNASGSILNTLQQ-----LKFY 530

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum} Length = 324

 Score = 44.6 bits (106), Expect = 5e-05
 Identities = 18/99 (18%), Positives = 39/99 (39%), Gaps = 19/99 (19%)

Query: 77  GKQVVLCGYGEVGKGCCQSLKGLGC-VIYI----TEIDPICALQACMDGFSVVKLNEVIR 131
           G+Q+++ G G++G+        LG  VI +       D         +  +     + + 
Sbjct: 137 GQQLLIYGTGQIGQSLAAKASALGMHVIGVNTTGHPADH------FHETVAFTATADALA 190

Query: 132 TVDIVVTA------TGNKNVVTREHMDKMKNGCVVCNMG 164
           T + +V A      T   ++ + E   + K   ++ N+G
Sbjct: 191 TANFIVNALPLTPTT--HHLFSTELFQQTKQQPMLINIG 227

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium} Length = 144

 Score = 41.7 bits (99), Expect = 1e-04
 Identities = 16/84 (19%), Positives = 35/84 (41%), Gaps = 5/84 (5%)

Query: 77  GKQVVLCGYGEVGKGCCQSLKGLGCVIYIT--EIDPICALQACMDGFSVV--KLNEVIRT 132
           G +++L G G +              + +    ID + A     +   V+   ++ +I+ 
Sbjct: 21  GNKILLVGNGMLASEIAPYFSYPQYKVTVAGRNIDHVRAFAEKYEYEYVLINDIDSLIKN 80

Query: 133 VDIVVTATGNKN-VVTREHMDKMK 155
            D+++TAT +K  +V    +   K
Sbjct: 81  NDVIITATSSKTPIVEERSLMPGK 104

>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp} Length = 381

 Score = 43.0 bits (102), Expect = 2e-04
 Identities = 19/106 (17%), Positives = 38/106 (35%), Gaps = 14/106 (13%)

Query: 66  SLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMDGFSVV 124
            L          + + + G G VG      L+ LG   +     DP     A  D     
Sbjct: 108 MLAERDGFSLRDRTIGIVGVGNVGSRLQTRLEALGIRTLL---CDPP--RAARGDEGDFR 162

Query: 125 KLNEVIRTVDIV-----VTATGN---KNVVTREHMDKMKNGCVVCN 162
            L+E+++  D++     +   G     ++     + ++K G ++ N
Sbjct: 163 TLDELVQEADVLTFHTPLYKDGPYKTLHLADETLIRRLKPGAILIN 208

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 Length = 352

 Score = 42.2 bits (100), Expect = 3e-04
 Identities = 24/150 (16%), Positives = 53/150 (35%), Gaps = 23/150 (15%)

Query: 77  GKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPIC---ALQACMDGFSVV-----KLNE 128
           G  V++ G G +G     + K  G  +  T   P     A     D   VV     + + 
Sbjct: 169 GTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCGADVTLVVDPAKEEESS 228

Query: 129 VIRT--------VDIVVTATGNKNVVTREHMDKMKNGCVVCN--MGHSNTEIDVNSLRTP 178
           +I           ++ +  +GN+  +    ++  + G  +    MG     + + +    
Sbjct: 229 IIERIRSAIGDLPNVTIDCSGNEKCI-TIGINITRTGGTLMLVGMGSQMVTVPLVNACAR 287

Query: 179 DLTWEKVRSQVDHVIWPDGKRIVLLAEGRL 208
           ++  + V    +   +P    + ++A GR 
Sbjct: 288 EIDIKSVFRYCN--DYPIA--LEMVASGRC 313

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 39.5 bits (91), Expect = 7e-04
 Identities = 9/37 (24%), Positives = 18/37 (48%), Gaps = 10/37 (27%)

Query: 488 KAIKGIVEESLTGVHRLYQLSKAGKLTVPAMNVNDSV 524
           +A+K + + SL    +LY    A     PA+ +  ++
Sbjct: 20  QALKKL-QASL----KLYADDSA-----PALAIKATM 46

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* Length = 144

 Score = 38.8 bits (91), Expect = 9e-04
 Identities = 24/151 (15%), Positives = 51/151 (33%), Gaps = 32/151 (21%)

Query: 78  KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDP--------ICALQACMDGFSVVKLNEV 129
           KQ  + G G  G    + L  +G  +   +I+                 +     +L  +
Sbjct: 7   KQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYASYATHAVIANATEENELLSL 66

Query: 130 -IRTVDIVVTATGNK---NVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKV 185
            IR  + V+ A G     + +T   + ++    +                +  +    KV
Sbjct: 67  GIRNFEYVIVAIGANIQASTLTTLLLKELDIPNIWV--------------KAQNYYHHKV 112

Query: 186 RSQ--VDHVIWPD---GKRIV-LLAEGRLVN 210
             +   D +I P+   G +I   L++  ++N
Sbjct: 113 LEKIGADRIIHPEKDMGVKIAQSLSDENVLN 143

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	542
3n58_A	464	Adenosylhomocysteinase; ssgcid, hydrolase, structu	100.0
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	100.0
3h9u_A	436	Adenosylhomocysteinase; NAD CO-factor complex, str	100.0
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	100.0
1v8b_A	479	Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2	100.0
3d64_A	494	Adenosylhomocysteinase; structural genomics, ssgci	100.0
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	100.0
3n58_A	464	Adenosylhomocysteinase; ssgcid, hydrolase, structu	100.0
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	100.0
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	100.0
3h9u_A	436	Adenosylhomocysteinase; NAD CO-factor complex, str	100.0
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	99.95
1v8b_A	479	Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2	99.94
3d64_A	494	Adenosylhomocysteinase; structural genomics, ssgci	99.9
4g2n_A	345	D-isomer specific 2-hydroxyacid dehydrogenase, Na;	99.58
3kb6_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	99.58
4e5n_A	330	Thermostable phosphite dehydrogenase; D-2-hydroxya	99.57
4hy3_A	365	Phosphoglycerate oxidoreductase; PSI-biology, stru	99.57
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	99.55
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	99.55
3hg7_A	324	D-isomer specific 2-hydroxyacid dehydrogenase FAM	99.52
3gg9_A	352	D-3-phosphoglycerate dehydrogenase oxidoreductase;	99.5
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	99.5
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	99.49
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	99.49
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	99.48
2pi1_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	99.47
2nac_A	393	NAD-dependent formate dehydrogenase; oxidoreductas	99.47
3oet_A	381	Erythronate-4-phosphate dehydrogenase; structural	99.46
4dgs_A	340	Dehydrogenase; structural genomics, PSI-biology, N	99.46
2j6i_A	364	Formate dehydrogenase; oxidoreductase, D-specific-	99.46
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	99.46
2yq5_A	343	D-isomer specific 2-hydroxyacid dehydrogenase; oxi	99.44
2o4c_A	380	Erythronate-4-phosphate dehydrogenase; erythronate	99.43
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	99.41
1dxy_A	333	D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc	99.39
1mx3_A	347	CTBP1, C-terminal binding protein 1; nuclear prote	99.39
1gdh_A	320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	99.38
3pp8_A	315	Glyoxylate/hydroxypyruvate reductase A; structural	99.37
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	99.36
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	99.36
1xdw_A	331	NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas	99.35
3gvx_A	290	Glycerate dehydrogenase related protein; NYSGXRC,	99.33
1j4a_A	333	D-LDH, D-lactate dehydrogenase; NAD-dependent dehy	99.32
1qp8_A	303	Formate dehydrogenase; oxidoreductase; HET: NDP; 2	99.31
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	99.31
2cuk_A	311	Glycerate dehydrogenase/glyoxylate reductase; stru	99.31
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	99.26
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	99.26
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	99.24
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	99.22
3kb6_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	99.07
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	99.07
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	99.07
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	99.06
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	99.02
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	99.0
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	98.93
1c1d_A	355	L-phenylalanine dehydrogenase; amino acid dehydrog	98.88
2pi1_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	98.84
4g2n_A	345	D-isomer specific 2-hydroxyacid dehydrogenase, Na;	98.81
4e5n_A	330	Thermostable phosphite dehydrogenase; D-2-hydroxya	98.8
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	98.78
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	98.78
3oet_A	381	Erythronate-4-phosphate dehydrogenase; structural	98.73
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	98.71
2yq5_A	343	D-isomer specific 2-hydroxyacid dehydrogenase; oxi	98.71
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	98.7
4dgs_A	340	Dehydrogenase; structural genomics, PSI-biology, N	98.7
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	98.68
2j6i_A	364	Formate dehydrogenase; oxidoreductase, D-specific-	98.67
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	98.66
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	98.66
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	98.66
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	98.65
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	98.65
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	98.65
3gg9_A	352	D-3-phosphoglycerate dehydrogenase oxidoreductase;	98.63
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	98.63
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	98.63
3hg7_A	324	D-isomer specific 2-hydroxyacid dehydrogenase FAM	98.62
4hy3_A	365	Phosphoglycerate oxidoreductase; PSI-biology, stru	98.62
3l07_A	285	Bifunctional protein fold; structural genomics, ID	98.6
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	98.59
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	98.59
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	98.59
3ngx_A	276	Bifunctional protein fold; methylenetetrahydrofola	98.58
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	98.58
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	98.58
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	98.56
2nac_A	393	NAD-dependent formate dehydrogenase; oxidoreductas	98.56
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	98.56
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	98.56
1xdw_A	331	NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas	98.56
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	98.55
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	98.53
3p2o_A	285	Bifunctional protein fold; structural genomics, ce	98.52
4a5o_A	286	Bifunctional protein fold; oxidoreductase, hydrola	98.52
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	98.51
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	98.5
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	98.5
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	98.5
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	98.49
1edz_A	320	5,10-methylenetetrahydrofolate dehydrogenase; nucl	98.49
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	98.48
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	98.48
1dxy_A	333	D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc	98.48
4a26_A	300	Putative C-1-tetrahydrofolate synthase, cytoplasm;	98.48
1a4i_A	301	Methylenetetrahydrofolate dehydrogenase / methenyl	98.47
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	98.47
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	98.47
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	98.47
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	98.47
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	98.46
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	98.46
1b0a_A	288	Protein (fold bifunctional protein); folate, dehyd	98.45
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	98.45
2o4c_A	380	Erythronate-4-phosphate dehydrogenase; erythronate	98.44
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	98.43
2c2x_A	281	Methylenetetrahydrofolate dehydrogenase- methenylt	98.43
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	98.42
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	98.42
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	98.41
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	98.41
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	98.41
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	98.41
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	98.4
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	98.4
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	98.4
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	98.39
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	98.38
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	98.38
4eez_A	348	Alcohol dehydrogenase 1; site-saturation mutagenes	98.38
4eye_A	342	Probable oxidoreductase; structural genomics, niai	98.38
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	98.37
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	98.36
1h2b_A	359	Alcohol dehydrogenase; oxidoreductase, archaea, hy	98.32
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	98.3
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	98.3
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	98.3
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	98.29
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	98.29
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	98.29
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	98.28
1gdh_A	320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	98.28
3pp8_A	315	Glyoxylate/hydroxypyruvate reductase A; structural	98.27
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	98.27
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	98.26
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	98.26
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	98.25
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	98.25
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	98.24
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	98.24
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	98.24
1j4a_A	333	D-LDH, D-lactate dehydrogenase; NAD-dependent dehy	98.24
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	98.23
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	98.22
3nx4_A	324	Putative oxidoreductase; csgid, structural genomic	98.21
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	98.21
1mx3_A	347	CTBP1, C-terminal binding protein 1; nuclear prote	98.21
1gtm_A	419	Glutamate dehydrogenase; oxidoreductase, NAD, NADP	98.21
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	98.21
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	98.21
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	98.2
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	98.2
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	98.2
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	98.19
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	98.19
2cuk_A	311	Glycerate dehydrogenase/glyoxylate reductase; stru	98.19
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	98.18
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	98.17
3krt_A	456	Crotonyl COA reductase; structural genomics, prote	98.17
1qp8_A	303	Formate dehydrogenase; oxidoreductase; HET: NDP; 2	98.17
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	98.17
3qha_A	296	Putative oxidoreductase; seattle structural genomi	98.16
3gms_A	340	Putative NADPH:quinone reductase; structural genom	98.16
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	98.15
4ezb_A	317	Uncharacterized conserved protein; structural geno	98.15
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	98.15
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	98.14
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	98.14
4gbj_A	297	6-phosphogluconate dehydrogenase NAD-binding; stru	98.14
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	98.14
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	98.13
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	98.12
3obb_A	300	Probable 3-hydroxyisobutyrate dehydrogenase; struc	98.12
1tt7_A	330	YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st	98.12
3gvx_A	290	Glycerate dehydrogenase related protein; NYSGXRC,	98.12
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	98.11
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	98.1
1xa0_A	328	Putative NADPH dependent oxidoreductases; structur	98.07
4b4u_A	303	Bifunctional protein fold; oxidoreductase; HET: NA	98.07
1gu7_A	364	Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s	98.07
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	98.06
1zsy_A	357	Mitochondrial 2-enoyl thioester reductase; medium-	98.06
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	98.03
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	98.01
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	98.0
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	98.0
3fr7_A	525	Putative ketol-acid reductoisomerase (OS05G057370	97.99
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	97.99
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	97.98
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	97.98
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	97.98
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	97.97
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	97.97
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	97.96
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	97.96
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	97.95
3c85_A	183	Putative glutathione-regulated potassium-efflux S	97.95
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	97.94
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	97.93
2ahr_A	259	Putative pyrroline carboxylate reductase; pyrrolin	97.92
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	97.92
1yb4_A	295	Tartronic semialdehyde reductase; structural genom	97.92
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	97.9
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	97.9
2zb4_A	357	Prostaglandin reductase 2; rossmann fold, alternat	97.89
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	97.88
2yjz_A	201	Metalloreductase steap4; oxidoreductase, metabolic	97.11
3iup_A	379	Putative NADPH:quinone oxidoreductase; YP_296108.1	97.86
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	97.86
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	97.84
2qrj_A	394	Saccharopine dehydrogenase, NAD+, L-lysine- formin	97.81
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	97.8
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	97.79
2i99_A	312	MU-crystallin homolog; thyroid hormine binding pro	97.78
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	97.78
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	97.77
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	97.76
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	97.75
4a27_A	349	Synaptic vesicle membrane protein VAT-1 homolog-L;	97.75
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	97.74
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	97.74
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	97.73
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	97.72
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	97.7
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	97.69
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	97.68
1i36_A	264	Conserved hypothetical protein MTH1747; NADP bindi	97.67
2dvm_A	439	Malic enzyme, 439AA long hypothetical malate oxido	97.67
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	97.66
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	97.64
3ulk_A	491	Ketol-acid reductoisomerase; branched-chain amino	97.64
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	97.63
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	97.62
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	97.62
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	97.6
2p4q_A	497	6-phosphogluconate dehydrogenase, decarboxylating;	97.58
3hdj_A	313	Probable ornithine cyclodeaminase; APC62486, borde	97.57
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	97.56
4gwg_A	484	6-phosphogluconate dehydrogenase, decarboxylating;	97.56
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	97.56
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	97.55
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	97.55
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	97.54
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	97.53
1x7d_A	350	Ornithine cyclodeaminase; binds NAD+, binds L-orni	97.53
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	97.52
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	97.5
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	97.49
2iz1_A	474	6-phosphogluconate dehydrogenase, decarboxylating;	97.49
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	97.48
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	97.48
1omo_A	322	Alanine dehydrogenase; two-domain, beta-sandwich-d	97.46
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	97.46
2pgd_A	482	6-phosphogluconate dehydrogenase; oxidoreductase (	97.46
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	97.44
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	97.41
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	97.38
1id1_A	153	Putative potassium channel protein; RCK domain, E.	97.38
3slk_A	795	Polyketide synthase extender module 2; rossmann fo	97.36
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	97.35
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	97.35
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	97.35
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	97.35
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	97.34
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	97.33
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	97.31
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	97.27
1pgj_A	478	6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o	97.26
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	97.25
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	97.23
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	97.22
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	97.19
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	97.19
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	97.18
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	97.15
3tum_A	269	Shikimate dehydrogenase family protein; rossmann-f	97.13
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	97.12
3aog_A	440	Glutamate dehydrogenase; NAD(H), oxidoreducta; HET	97.1
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	97.08
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	97.07
2rcy_A	262	Pyrroline carboxylate reductase; malaria, structur	97.06
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	97.04
4b79_A	242	PA4098, probable short-chain dehydrogenase; oxidor	97.02
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	97.0
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	96.99
2tmg_A	415	Protein (glutamate dehydrogenase); metabolic role,	96.98
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	96.98
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	96.97
3nv9_A	487	Malic enzyme; rossmann fold, oxidoreductase; 2.25A	96.94
4fgs_A	273	Probable dehydrogenase protein; PSI-biology, nysgr	96.94
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	96.94
2z2v_A	365	Hypothetical protein PH1688; L-lysine dehydrogenas	96.91
3k92_A	424	NAD-GDH, NAD-specific glutamate dehydrogenase; ROC	96.9
2dc1_A	236	L-aspartate dehydrogenase; NAD, oxidoreductase; HE	96.9
4fs3_A	256	Enoyl-[acyl-carrier-protein] reductase [NADPH] FA;	96.88
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	96.84
2qyt_A	317	2-dehydropantoate 2-reductase; APC81190, porphyrom	96.83
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	96.81
1yj8_A	375	Glycerol-3-phosphate dehydrogenase; SGPP, structur	96.81
4fcc_A	450	Glutamate dehydrogenase; protein complex, rossmann	96.8
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	96.8
2yfq_A	421	Padgh, NAD-GDH, NAD-specific glutamate dehydrogena	96.76
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	96.73
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	96.71
3aoe_E	419	Glutamate dehydrogenase; rossmann fold, NADH, oxid	96.7
1npy_A	271	Hypothetical shikimate 5-dehydrogenase-like protei	96.65
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	96.64
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	96.63
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	96.62
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	96.61
2i76_A	276	Hypothetical protein; NADP, dehydrogenase, TM1727,	96.61
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	96.6
3e18_A	359	Oxidoreductase; dehydrogenase, NAD-binding, struct	96.6
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	96.57
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	96.56
1v9l_A	421	Glutamate dehydrogenase; protein-NAD complex, oxid	96.53
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	96.53
1pjq_A	457	CYSG, siroheme synthase; rossman fold, nucleotide	96.52
4hkt_A	331	Inositol 2-dehydrogenase; structural genomics, nys	96.52
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	96.5
2axq_A	467	Saccharopine dehydrogenase; rossmann fold variant,	96.49
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	96.48
4g81_D	255	Putative hexonate dehydrogenase; enzyme function i	96.47
3c7a_A	404	Octopine dehydrogenase; L) stereospecific opine de	96.47
3cea_A	346	MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore	96.43
3tl2_A	315	Malate dehydrogenase; center for structural genomi	96.42
3euw_A	344	MYO-inositol dehydrogenase; protein structure init	96.41
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	96.39
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	96.37
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	96.37
3vku_A	326	L-LDH, L-lactate dehydrogenase; rossmann fold, NAD	96.35
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	96.34
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	96.33
3ged_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	96.32
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	96.32
1ff9_A	450	Saccharopine reductase; lysine biosynthesis, alpha	96.32
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	96.31
2bma_A	470	Glutamate dehydrogenase (NADP+); malaria, drug des	96.3
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	96.3
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	96.29
3q2o_A	389	Phosphoribosylaminoimidazole carboxylase, ATPase;	96.24
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	96.23
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	96.23
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	96.21
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	96.19
3db2_A	354	Putative NADPH-dependent oxidoreductase; two domai	96.18
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	96.17
2bka_A	242	CC3, TAT-interacting protein TIP30; NADPH, PEG600,	96.17
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	96.16
3q2i_A	354	Dehydrogenase; rossmann fold, UDP-sugar binding, N	96.16
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	96.15
2glx_A	332	1,5-anhydro-D-fructose reductase; NADP(H) dependen	96.13
3r3j_A	456	Glutamate dehydrogenase; rossman fold, oxidoreduct	96.13
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	96.13
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	96.09
2ho3_A	325	Oxidoreductase, GFO/IDH/MOCA family; streptococcus	96.07
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	96.06
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	96.05
2h7i_A	269	Enoyl-[acyl-carrier-protein] reductase [NADH]; oxi	96.05
4h15_A	261	Short chain alcohol dehydrogenase-related dehydro;	96.04
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	96.04
4eso_A	255	Putative oxidoreductase; NADP, structural genomics	96.03
1gq2_A	555	Malic enzyme; oxidoreductase, pigeon liver, NADP-d	95.99
3nep_X	314	Malate dehydrogenase; halophIle, molecular adpatat	95.97
3bio_A	304	Oxidoreductase, GFO/IDH/MOCA family; structural ge	95.96
3c1a_A	315	Putative oxidoreductase; ZP_00056571.1, oxidoreduc	95.95
3uuw_A	308	Putative oxidoreductase with NAD(P)-binding rossm	95.94
1xea_A	323	Oxidoreductase, GFO/IDH/MOCA family; structural ge	95.94
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	95.93
4g65_A	461	TRK system potassium uptake protein TRKA; structur	95.93
1bgv_A	449	Glutamate dehydrogenase; oxidoreductase; HET: GLU;	95.93
3ezy_A	344	Dehydrogenase; structural genomics, unknown functi	95.92
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	95.88
3orq_A	377	N5-carboxyaminoimidazole ribonucleotide synthetas;	95.88
3r7f_A	304	Aspartate carbamoyltransferase; aspartate transcar	95.87
1o0s_A	605	NAD-ME, NAD-dependent malic enzyme; oxidoreductase	95.86
3grk_A	293	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	95.86
3rc1_A	350	Sugar 3-ketoreductase; sugar biosynthesis, TDP bin	95.83
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	95.78
1hxh_A	253	3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-b	95.78
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	95.77
4hp8_A	247	2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi	95.75
1f06_A	320	MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH	95.73
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	95.71
1pg5_A	299	Aspartate carbamoyltransferase; 2.60A {Sulfolobus	95.71
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	95.7
1zk4_A	251	R-specific alcohol dehydrogenase; short chain redu	95.67
3e82_A	364	Putative oxidoreductase; NAD, GFO/IDH/MOCA family,	95.66
2pd4_A	275	Enoyl-[acyl-carrier-protein] reductase [NADH]; ant	95.66
3tzq_B	271	Short-chain type dehydrogenase/reductase; ssgcid,	95.66
2i6u_A	307	Otcase, ornithine carbamoyltransferase; X-RAY crys	95.66
3e9m_A	330	Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA,	95.66
3gvc_A	277	Oxidoreductase, probable short-chain type dehydrog	95.65
3v2g_A	271	3-oxoacyl-[acyl-carrier-protein] reductase; struct	95.65
3oh8_A	516	Nucleoside-diphosphate sugar epimerase (SULA FAMI;	95.65
2dtx_A	264	Glucose 1-dehydrogenase related protein; rossmann	95.65
1nvm_B	312	Acetaldehyde dehydrogenase (acylating), 4-hydroxy-	95.62
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	95.62
1y81_A	138	Conserved hypothetical protein; hyperthermophIle,	95.6
2wyu_A	261	Enoyl-[acyl carrier protein] reductase; oxidoreduc	95.6
3evn_A	329	Oxidoreductase, GFO/IDH/MOCA family; structural ge	95.59
3mz0_A	344	Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd;	95.56
1g0o_A	283	Trihydroxynaphthalene reductase; protein-NADPH-act	95.55
1lnq_A	336	MTHK channels, potassium channel related protein;	95.54
4dry_A	281	3-oxoacyl-[acyl-carrier-protein] reductase; struct	95.54
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	95.54
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	95.54
3uce_A	223	Dehydrogenase; rossmann fold, oxidoreductase; HET:	95.51
2a4k_A	263	3-oxoacyl-[acyl carrier protein] reductase; reduct	95.51
2gdz_A	267	NAD+-dependent 15-hydroxyprostaglandin dehydrogen;	95.5
1xq6_A	253	Unknown protein; structural genomics, protein stru	95.5
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	95.5
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	95.49
1pvv_A	315	Otcase, ornithine carbamoyltransferase; dodecamer;	95.49
2p91_A	285	Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD	95.48
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	95.47
1tlt_A	319	Putative oxidoreductase (virulence factor MVIM HO;	95.45
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	95.45
1vlv_A	325	Otcase, ornithine carbamoyltransferase; TM1097, st	95.43
1xhl_A	297	Short-chain dehydrogenase/reductase family member	95.42
3kux_A	352	Putative oxidoreductase; oxidoreductase family, cs	95.42
1pj3_A	564	NAD-dependent malic enzyme, mitochondrial; oxidati	95.41
3ak4_A	263	NADH-dependent quinuclidinone reductase; SDR, (R)-	95.39
3e48_A	289	Putative nucleoside-diphosphate-sugar epimerase; a	95.36
3orf_A	251	Dihydropteridine reductase; alpha-beta-alpha sandw	95.36
3csu_A	310	Protein (aspartate carbamoyltransferase); transfer	95.35
2ef0_A	301	Ornithine carbamoyltransferase; TTHA1199, thermus	95.35
3ec7_A	357	Putative dehydrogenase; alpha-beta, structural gen	95.35
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	95.34
3mw9_A	501	GDH 1, glutamate dehydrogenase 1; allostery, inhib	95.34
1uzm_A	247	3-oxoacyl-[acyl-carrier protein] reductase; beta-k	95.34
1ez4_A	318	Lactate dehydrogenase; rossmann fold, oxidoreducta	95.34
2o7s_A	523	DHQ-SDH PR, bifunctional 3-dehydroquinate dehydrat	95.32
4e4t_A	419	Phosphoribosylaminoimidazole carboxylase, ATPase;	95.32
1mld_A	314	Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D	95.3
1qsg_A	265	Enoyl-[acyl-carrier-protein] reductase; enoyl redu	95.3
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	95.29
1dxh_A	335	Ornithine carbamoyltransferase; transcarbamylase;	95.27
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	95.27
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	95.26
3qy9_A	243	DHPR, dihydrodipicolinate reductase; rossmann fold	95.25
1ydw_A	362	AX110P-like protein; structural genomics, protein	95.22
3r3s_A	294	Oxidoreductase; structural genomics, csgid, center	95.18
2q2v_A	255	Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidore	95.18
3m2t_A	359	Probable dehydrogenase; PSI, SGXNY, structural gen	95.17
2c5a_A	379	GDP-mannose-3', 5'-epimerase; short chain dehydrat	95.15
4had_A	350	Probable oxidoreductase protein; structural genomi	95.15
1duv_G	333	Octase-1, ornithine transcarbamoylase; enzyme-inhi	95.14
3t4x_A	267	Oxidoreductase, short chain dehydrogenase/reducta;	95.14
2zqz_A	326	L-LDH, L-lactate dehydrogenase; oxidoreductase, ro	95.1
2wm3_A	299	NMRA-like family domain containing protein 1; unkn	95.09
3dfu_A	232	Uncharacterized protein from 6-phosphogluconate de	95.07
3p19_A	266	BFPVVD8, putative blue fluorescent protein; rossma	95.06
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	95.06
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	95.06
1ml4_A	308	Aspartate transcarbamoylase; beta pleated sheet, p	95.06
2czc_A	334	Glyceraldehyde-3-phosphate dehydrogenase; glycolys	95.03
3rft_A	267	Uronate dehydrogenase; apoenzyme, rossmann fold, N	95.02
2dkn_A	255	3-alpha-hydroxysteroid dehydrogenase; oxidoreducta	95.01
1wma_A	276	Carbonyl reductase [NADPH] 1; oxidoreductase; HET:	95.01
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	95.01
1b7g_O	340	Protein (glyceraldehyde 3-phosphate dehydrogenase;	94.99
3ai3_A	263	NADPH-sorbose reductase; rossmann-fold, NADPH-depe	94.99
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	94.98
3is3_A	270	17BETA-hydroxysteroid dehydrogenase; short chain d	94.98
2x4g_A	342	Nucleoside-diphosphate-sugar epimerase; isomerase;	94.96
2gas_A	307	Isoflavone reductase; NADPH-dependent reductase, o	94.95
3upl_A	446	Oxidoreductase; rossmann fold, NADPH binding; 1.50	94.94
3gdo_A	358	Uncharacterized oxidoreductase YVAA; structural ge	94.92
2pzm_A	330	Putative nucleotide sugar epimerase/ dehydratase;	94.92
2gn4_A	344	FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann	94.92
1sb8_A	352	WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN	94.91
3d3w_A	244	L-xylulose reductase; uronate cycle, short-chain d	94.9
2x0j_A	294	Malate dehydrogenase; oxidoreductase, hyperthermop	94.87
2o23_A	265	HADH2 protein; HSD17B10, schad, ERAB, type II HADH	94.85
3uxy_A	266	Short-chain dehydrogenase/reductase SDR; structura	94.85
3rui_A	340	Ubiquitin-like modifier-activating enzyme ATG7; au	94.85
4e6p_A	259	Probable sorbitol dehydrogenase (L-iditol 2-dehyd;	94.84
1fjh_A	257	3alpha-hydroxysteroid dehydrogenase/carbonyl reduc	94.82
2jl1_A	287	Triphenylmethane reductase; oxidoreductase, biorem	94.82
2p2s_A	336	Putative oxidoreductase; YP_050235.1, structural g	94.8
3ek2_A	271	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	94.79
1uls_A	245	Putative 3-oxoacyl-acyl carrier protein reductase;	94.79
1cyd_A	244	Carbonyl reductase; short-chain dehydrogenase, oxi	94.78
1hdc_A	254	3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi	94.78
3r1i_A	276	Short-chain type dehydrogenase/reductase; structur	94.77
2q1s_A	377	Putative nucleotide sugar epimerase/ dehydratase;	94.74

>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus}

Probab=100.00  E-value=2.7e-68  Score=565.95  Aligned_cols=259  Identities=56%  Similarity=0.944  Sum_probs=249.2

Q ss_pred             cccccceeecCchhhhHHHHhHHHHHHHHHHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhh
Q psy4626          35 GKLTVPAMNVNDSVTKTKFDNLYMCRESIIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICAL  114 (542)
Q Consensus        35 ~~L~~PV~~vn~s~~K~~fd~~~g~~~s~~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~  114 (542)
                      |.|.+||++||||++|++|||+|||++|++++++|+++..+.|++|+|+|+|+||+.+|++|+++||+|+++|++|.+..
T Consensus       205 g~L~~PvinVnds~tK~~fDn~yG~~eslvdgI~Ratg~~L~GKTVgVIG~G~IGr~vA~~lrafGa~Viv~d~dp~~a~  284 (464)
T 3n58_A          205 GLLPFPAINVNDSVTKSKFDNKYGCKESLVDGIRRGTDVMMAGKVAVVCGYGDVGKGSAQSLAGAGARVKVTEVDPICAL  284 (464)
T ss_dssp             TCCCSCEEECTTSHHHHTTHHHHHHHHHHHHHHHHHHCCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHH
T ss_pred             CCCCCCEEeeccHhhhhhhhhhhcchHHHHHHHHHhcCCcccCCEEEEECcCHHHHHHHHHHHHCCCEEEEEeCCcchhh
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999888


Q ss_pred             hhhcCCceeeCHHHHhcCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCCCcccChHhhcCCCcceeeeccceeeEec
Q psy4626         115 QACMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIW  194 (542)
Q Consensus       115 ~A~~~G~~v~~l~e~l~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g~~eid~~aL~~~~l~v~~~~~~v~~y~~  194 (542)
                      ++.+.|+++++++++++.+|+|++++|++++|+.++|+.||+|++++|+||++.|+|.++|..  .++.+++++++.|.+
T Consensus       285 ~A~~~G~~vv~LeElL~~ADIVv~atgt~~lI~~e~l~~MK~GAILINvGRgdvEID~~aL~~--~~~~~ik~~v~~~~~  362 (464)
T 3n58_A          285 QAAMDGFEVVTLDDAASTADIVVTTTGNKDVITIDHMRKMKDMCIVGNIGHFDNEIQVAALRN--LKWTNVKPQVDLIEF  362 (464)
T ss_dssp             HHHHTTCEECCHHHHGGGCSEEEECCSSSSSBCHHHHHHSCTTEEEEECSSSTTTBTCGGGTT--SEEEEEETTEEEEEC
T ss_pred             HHHhcCceeccHHHHHhhCCEEEECCCCccccCHHHHhcCCCCeEEEEcCCCCcccCHHHHHh--CccccccCCeeEEEe
Confidence            888999999999999999999999999999999999999999999999999999999999984  677889999999999


Q ss_pred             CCCCEEEEecCCCcccccCCC-ChhHHHhhHHHHHHHHHHHHhcCCCCCCCCccccCChhhHHHHHHhcCCccccccccc
Q psy4626         195 PDGKRIVLLAEGRLVNLSCSS-LPSFVVSITACTQALALIELFNAPSGRYKSDVYLLPKKMDEYVASLHLPTFDAHLTEL  273 (542)
Q Consensus       195 ~dg~~I~LLa~GrLvnl~~~t-hp~~vmd~sfa~q~la~~~L~~~~~~~~~~gv~~lp~~~d~~VA~l~L~~lg~~i~~l  273 (542)
                      |||+.|+||++|||+||+|++ ||+++||+||++|+|++++||+++ ++|+++||.||+++|++||++||++||++||+|
T Consensus       363 ~~g~~i~lLaeGrlvNL~~a~GhP~~vm~~sf~~Q~la~~~l~~~~-~~~~~~v~~lP~~lDe~VA~l~L~~~g~~l~~l  441 (464)
T 3n58_A          363 PDGKRLILLSEGRLLNLGNATGHPSFVMSASFTNQVLGQIELFTRT-DAYKNEVYVLPKHLDEKVARLHLDKLGAKLTVL  441 (464)
T ss_dssp             TTSCEEEEEGGGSBHHHHHSCCSCHHHHHHHHHHHHHHHHHHHHSG-GGCCSSEECCCHHHHHHHHHHHHGGGTCCCCCC
T ss_pred             CCCCEEEEEeCCceecccCCCCChHHHHhHHHHHHHHHHHHHHhCc-cccCCCeeECCHHHHHHHHHHHHHHcCCEeccC
Confidence            999999999999999999995 999999999999999999999998 789999999999999999999999999999999


Q ss_pred             cHHHHhhcCCCCCCCCCCCcccc
Q psy4626         274 SDEQAKYMGLNKAGPFKPSYYSM  296 (542)
Q Consensus       274 t~~~a~~lg~~e~~p~~a~ea~m  296 (542)
                      |++|++|||+|..+|||...+++
T Consensus       442 t~~Q~~yl~~~~~gp~k~~~yry  464 (464)
T 3n58_A          442 SEEQAAYIGVTPQGPFKSEHYRY  464 (464)
T ss_dssp             CHHHHHHHTCCTTSCCSCTTCCC
T ss_pred             CHHHHHHcCCCCCCCCCCccCCC
Confidence            99999999999999999987653

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=100.00  E-value=2.1e-66  Score=550.91  Aligned_cols=291  Identities=83%  Similarity=1.354  Sum_probs=280.8

Q ss_pred             CccHHHHHHHhCCCCCCCCceeeceecccHHhh-----------------------------------------------
Q psy4626           1 MPGIMALRKRAGDDKPLKNARIVGCTHINAQTA-----------------------------------------------   33 (542)
Q Consensus         1 MP~l~~l~~~~~~~~pl~G~~i~~~lh~~~~tA-----------------------------------------------   33 (542)
                      ||+|+++|++|+.+|||+|.||++|+|+|+|||                                               
T Consensus        36 mp~l~~~r~~~~~~~pl~G~ri~~~lH~~~~Ta~l~~tL~~~GA~v~~~~~n~~stqd~~aaal~~~gi~v~a~~g~~~~  115 (435)
T 3gvp_A           36 MPALMALRKRAQGEKPLAGAKIVGCTHITAQTAVLMETLGALGAQCRWAACNIYSTLNEVAAALAESGFPVFAWKGESED  115 (435)
T ss_dssp             CHHHHHHHHHHSTTCTTTTCEEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSCCCHHHHHHHHHHTCCEECCTTCCHH
T ss_pred             CHHHHHHHHHHhccCCCCCCEEEEEEccHHHHHHHHHHHHHCCCEEEEEecCCCcChHHHHHHHHhcCCeEEEecCCCHH
Confidence            999999999999999999999999999999998                                               


Q ss_pred             -------------------------------------------------------------hcccccceeecCchhhhHH
Q psy4626          34 -------------------------------------------------------------AGKLTVPAMNVNDSVTKTK   52 (542)
Q Consensus        34 -------------------------------------------------------------~~~L~~PV~~vn~s~~K~~   52 (542)
                                                                                   +|.|.+||++||||++|++
T Consensus       116 ey~~~~~~~~~~~~~~p~~ilDdGgdl~~~~h~~~~~~~~~i~G~~EeTttGv~rl~~~~~~g~L~~Pvi~vnds~tK~~  195 (435)
T 3gvp_A          116 DFWWCIDRCVNVEGWQPNMILDDGGDLTHWIYKKYPNMFKKIKGIVEESVTGVHRLYQLSKAGKLCVPAMNVNDSVTKQK  195 (435)
T ss_dssp             HHHHHHHHHHCBTTBCCSEEEESSSHHHHHHHHHCHHHHHTCCEEEECCHHHHHHHTCC--CCCCCSCEEECTTCHHHHH
T ss_pred             HHHHHHHHHHhccCCCCcEEEecchHHHHHHHHHhHHHHhhcceeEeccchhHHHHHHHHHcCCCCCCEEEecchhhhhh
Confidence                                                                         5689999999999999999


Q ss_pred             HHhHHHHHHHHHHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHHHHhcC
Q psy4626          53 FDNLYMCRESIIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRT  132 (542)
Q Consensus        53 fd~~~g~~~s~~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~  132 (542)
                      |||+|||++|++++++|+++..+.|++|+|+|||+||+.+|+.|+++|++|+++|++|.+..+|.+.|+.+.++++++++
T Consensus       196 fDn~yGt~~s~~~gi~rat~~~L~GktV~ViG~G~IGk~vA~~Lra~Ga~Viv~D~dp~ra~~A~~~G~~v~~Leeal~~  275 (435)
T 3gvp_A          196 FDNLYCCRESILDGLKRTTDMMFGGKQVVVCGYGEVGKGCCAALKAMGSIVYVTEIDPICALQACMDGFRLVKLNEVIRQ  275 (435)
T ss_dssp             HHTHHHHHHHHHHHHHHHHCCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECCHHHHTTT
T ss_pred             hhhhhhhHHHHHHHHHHhhCceecCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEeCChhhhHHHHHcCCEeccHHHHHhc
Confidence            99999999999999999998899999999999999999999999999999999999999988888999999999999999


Q ss_pred             CcEEEEcCCCcccCCHHHHhccCCCeEEEeccCCCcccChHhhcCCCcceeeeccceeeEecCCCCEEEEecCCCccccc
Q psy4626         133 VDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIVLLAEGRLVNLS  212 (542)
Q Consensus       133 aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g~~eid~~aL~~~~l~v~~~~~~v~~y~~~dg~~I~LLa~GrLvnl~  212 (542)
                      +|+||+|+|++++|+.++|+.||+|++++|+||++.|+|++++.....+..+++++++.|.+++|+.|+||++||++||+
T Consensus       276 ADIVi~atgt~~lI~~e~l~~MK~gailINvgrg~~EId~~~L~~~~~~~~~ir~~v~~y~~~dg~~I~LLAeGrLvNl~  355 (435)
T 3gvp_A          276 VDIVITCTGNKNVVTREHLDRMKNSCIVCNMGHSNTEIDVASLRTPELTWERVRSQVDHVIWPDGKRIVLLAEGRLLNLS  355 (435)
T ss_dssp             CSEEEECSSCSCSBCHHHHHHSCTTEEEEECSSTTTTBTGGGGCSTTCEEEEEETTEEEEECTTSCEEEEEGGGSBHHHH
T ss_pred             CCEEEECCCCcccCCHHHHHhcCCCcEEEEecCCCccCCHHHHHhhcceeEEEEcCeeeEEcCCCcEEEEecCCCEeeec
Confidence            99999999999999999999999999999999999999999997666777889999999999999999999999999999


Q ss_pred             CCCChhHHHhhHHHHHHHHHHHHhcCCCCCCCCccccCChhhHHHHHHhcCCccccccccccHHHHhhcCCCCCCCCCC
Q psy4626         213 CSSLPSFVVSITACTQALALIELFNAPSGRYKSDVYLLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKP  291 (542)
Q Consensus       213 ~~thp~~vmd~sfa~q~la~~~L~~~~~~~~~~gv~~lp~~~d~~VA~l~L~~lg~~i~~lt~~~a~~lg~~e~~p~~a  291 (542)
                      |++||+++||+||++|+|+++|||+++.++|+++||.||+++|++||++||++||++||+||++|++|||+|+.+|||.
T Consensus       356 ~~~hp~~vm~~sf~~q~la~~~l~~~~~~~~~~~v~~lp~~~d~~vA~~~l~~~g~~~~~lt~~q~~y~~~~~~g~~k~  434 (435)
T 3gvp_A          356 CSTVPTFVLSITATTQALALIELYNAPEGRYKQDVYLLPKKMDEYVASLHLPTFDAHLTELTDEQAKYLGLNKNGPFKP  434 (435)
T ss_dssp             HCCCCHHHHHHHHHHHHHHHHHHHHCCTTTSCSSEEECCHHHHHHHHHHHGGGGTCCCCCCCHHHHHHHTCCTTCCCSC
T ss_pred             CCCCcHHHHhHHHHHHHHHHHHHHhCcccccCCCeeeCCHHHHHHHHHHHHHhcCCEeccCCHHHHHHcCCCCCCCCCC
Confidence            9999999999999999999999999863589999999999999999999999999999999999999999999999996

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*

Probab=100.00  E-value=1e-63  Score=531.57  Aligned_cols=296  Identities=53%  Similarity=0.925  Sum_probs=283.1

Q ss_pred             CccHHHHHHHhCCCCCCCCceeeceecccHHhh-----------------------------------------------
Q psy4626           1 MPGIMALRKRAGDDKPLKNARIVGCTHINAQTA-----------------------------------------------   33 (542)
Q Consensus         1 MP~l~~l~~~~~~~~pl~G~~i~~~lh~~~~tA-----------------------------------------------   33 (542)
                      ||+|+++|++|+.+|||+|.||++|+|+|+|||                                               
T Consensus        25 mp~l~~~r~~~~~~~pl~g~ri~~~lh~~~~Ta~l~~tL~~~GA~v~~~~~n~~stqd~~aaal~~~gi~v~a~~ge~~~  104 (436)
T 3h9u_A           25 MPGLMELRREYGPSKPLKGAKIAGCLHMTMQTAVLIETLVELGAEVRWASCNIFSTQDHAAAAIAKRGIPVFAWKGETEE  104 (436)
T ss_dssp             CHHHHHHHHHHTTTCTTTTCEEEEESCCSHHHHHHHHHHHHTTCEEEEECSSTTTCCHHHHHHHHHTTCCEEECTTCCHH
T ss_pred             CHHHHHHHHHHhccCCCCCCEEEEEeccHHHHHHHHHHHHHcCCEEEEecCCCCCCcHHHHHHHHhcCCeEEEeCCCCHH
Confidence            999999999999999999999999999999998                                               


Q ss_pred             ---------------------------------------------------------------hcccccceeecCchhhh
Q psy4626          34 ---------------------------------------------------------------AGKLTVPAMNVNDSVTK   50 (542)
Q Consensus        34 ---------------------------------------------------------------~~~L~~PV~~vn~s~~K   50 (542)
                                                                                     ++.|.+||++||+|++|
T Consensus       105 ey~~~~~~~l~~~~~~~~p~~ilDdGgdl~~~~h~~~~~~~~~i~G~~EeTttGv~rL~~~~~~g~L~iPVinvndsvtk  184 (436)
T 3h9u_A          105 EYMWCMKQTLKGFSGDGYPNMLLDDGGDLTNYVLDECKELDGKIYGVSEETTTGVKNLYKRLQRGKLTIPAMNVNDSVTK  184 (436)
T ss_dssp             HHHHHHHHTTSCBTTTBCCSEEEESSSHHHHHHHHHC-CCTTTCCCEEECSHHHHHHHHHHHHHTCCCSCEEECTTSHHH
T ss_pred             HHHHHHHHHHHhcccCCCCceEeccccHHHHHHHHHhHHHHhhccceeeccCcChHHHHHHHHcCCCCCceEeechhhhh
Confidence                                                                           34688999999999999


Q ss_pred             HHHHhHHHHHHHHHHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHHHHh
Q psy4626          51 TKFDNLYMCRESIIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVI  130 (542)
Q Consensus        51 ~~fd~~~g~~~s~~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l  130 (542)
                      +.||+.|||+++++++++++++..+.|++|+|+|+|+||+.+|+.|+++|++|+++|++|.+..++.+.|+.+.++++++
T Consensus       185 ~~~Dn~~Gt~~slldgi~ratg~~L~GktVgIiG~G~IG~~vA~~Lka~Ga~Viv~D~~p~~a~~A~~~G~~~~sL~eal  264 (436)
T 3h9u_A          185 SKFDNLYGCRESLVDGIKRATDVMIAGKTACVCGYGDVGKGCAAALRGFGARVVVTEVDPINALQAAMEGYQVLLVEDVV  264 (436)
T ss_dssp             HTTHHHHHHHHHHHHHHHHHHCCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECCHHHHT
T ss_pred             hhhhccccchHHHHHHHHHhcCCcccCCEEEEEeeCHHHHHHHHHHHHCCCEEEEECCChhhhHHHHHhCCeecCHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999998888889999999999999


Q ss_pred             cCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCCCcccChHhhcCCCcceeeeccceeeEecCCCCEEEEecCCCccc
Q psy4626         131 RTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIVLLAEGRLVN  210 (542)
Q Consensus       131 ~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g~~eid~~aL~~~~l~v~~~~~~v~~y~~~dg~~I~LLa~GrLvn  210 (542)
                      +++|+|+.+++++++++.+.|+.||+|++++|+||++.|||+++|...++++.+++++++.|.++||+.|+||++||++|
T Consensus       265 ~~ADVVilt~gt~~iI~~e~l~~MK~gAIVINvgRg~vEID~~~L~~~~~~~~~ir~~vd~y~~~dg~~I~LLaeGrLvN  344 (436)
T 3h9u_A          265 EEAHIFVTTTGNDDIITSEHFPRMRDDAIVCNIGHFDTEIQVAWLKANAKERVEVKPQVDRYTMANGRHIILLAEGRLVN  344 (436)
T ss_dssp             TTCSEEEECSSCSCSBCTTTGGGCCTTEEEEECSSSGGGBCHHHHHHHCSEEEEEETTEEEEECTTSCEEEEEGGGSCHH
T ss_pred             hhCCEEEECCCCcCccCHHHHhhcCCCcEEEEeCCCCCccCHHHHHhhcCceEeecCCceEEEcCCCCEEEEecCCCeec
Confidence            99999999999999999999999999999999999999999999988788888999999999999999999999999999


Q ss_pred             ccCCC-ChhHHHhhHHHHHHHHHHHHhcCCC-CCCCCc----cccCChhhHHHHHHhcCCccccccccccHHHHhhcCCC
Q psy4626         211 LSCSS-LPSFVVSITACTQALALIELFNAPS-GRYKSD----VYLLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLN  284 (542)
Q Consensus       211 l~~~t-hp~~vmd~sfa~q~la~~~L~~~~~-~~~~~g----v~~lp~~~d~~VA~l~L~~lg~~i~~lt~~~a~~lg~~  284 (542)
                      |+|++ ||+++||+||++|+|++++||+++. ++|+++    ||.||+++|++||++||++||++||+||++|++|||+|
T Consensus       345 l~~~~Ghp~~vm~~sf~~q~la~~~l~~~~~~~~~~~~~~~~v~~lp~~~d~~vA~~~l~~~g~~~~~lt~~q~~y~~~~  424 (436)
T 3h9u_A          345 LGCASGHPSFVMSNSFCNQVLAQIELWTNRDTGKYPRGAKAQVYFLPKKLDEKVAALHLGKLGAKLTKLTPKQAEYINCP  424 (436)
T ss_dssp             HHHSCCSCHHHHHHHHHHHHHHHHHHHHTTTTTSSCC---CCEEECCHHHHHHHHHHHHHHHTCCCCCCCHHHHHHTTSC
T ss_pred             ccCCCCChHHHhhHHHHHHHHHHHHHHhCCCcccCCCCCCceeeeCCHHHHHHHHHHHHHHcCCccccCCHHHHHhcCCC
Confidence            99995 9999999999999999999999972 389999    99999999999999999999999999999999999999


Q ss_pred             CCCCCCCCcccc
Q psy4626         285 KAGPFKPSYYSM  296 (542)
Q Consensus       285 e~~p~~a~ea~m  296 (542)
                      +.+|||...+++
T Consensus       425 ~~g~~~~~~~~~  436 (436)
T 3h9u_A          425 VDGPFKPDHYRY  436 (436)
T ss_dssp             TTCCCSCTTCCC
T ss_pred             cCCCCCcccCCC
Confidence            999999987653

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=100.00  E-value=6.6e-55  Score=470.03  Aligned_cols=261  Identities=51%  Similarity=0.876  Sum_probs=242.2

Q ss_pred             ccccceeecCchhhhHHHHhHHHHHHHHHHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhh
Q psy4626          36 KLTVPAMNVNDSVTKTKFDNLYMCRESIIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQ  115 (542)
Q Consensus        36 ~L~~PV~~vn~s~~K~~fd~~~g~~~s~~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~  115 (542)
                      .|.+||++|||+.+|++|||+|||++|++++++|.++..+.|++|+|+|+|.||+++|+.|+++|++|+++|++|.++.+
T Consensus       224 ~L~iPvinvnDs~tK~~fDn~yGt~~sl~dgi~r~tg~~L~GKtVvVtGaGgIG~aiA~~Laa~GA~Viv~D~~~~~a~~  303 (488)
T 3ond_A          224 TLLFPAINVNDSVTKSKFDNLYGCRHSLPDGLMRATDVMIAGKVAVVAGYGDVGKGCAAALKQAGARVIVTEIDPICALQ  303 (488)
T ss_dssp             CCCSCEEECTTSHHHHTTHHHHHHHHHHHHHHHHHHCCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHH
T ss_pred             CCCCceecccchhhhhHhhhhccccHHHHHHHHHHcCCcccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHH
Confidence            37899999999999999999999999999999999888899999999999999999999999999999999999999888


Q ss_pred             hhcCCceeeCHHHHhcCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCCCcccChHhhcCC-CcceeeeccceeeEec
Q psy4626         116 ACMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTP-DLTWEKVRSQVDHVIW  194 (542)
Q Consensus       116 A~~~G~~v~~l~e~l~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g~~eid~~aL~~~-~l~v~~~~~~v~~y~~  194 (542)
                      +.+.|+++.++++++..+|+|++++|+.++++.+.++.||++++++|+|+++.++++..+..- ......+++++..+.+
T Consensus       304 Aa~~g~dv~~lee~~~~aDvVi~atG~~~vl~~e~l~~mk~gaiVvNaG~~~~Ei~~~~l~~~~~v~~~~i~~~v~~~~~  383 (488)
T 3ond_A          304 ATMEGLQVLTLEDVVSEADIFVTTTGNKDIIMLDHMKKMKNNAIVCNIGHFDNEIDMLGLETHPGVKRITIKPQTDRWVF  383 (488)
T ss_dssp             HHHTTCEECCGGGTTTTCSEEEECSSCSCSBCHHHHTTSCTTEEEEESSSTTTTBTHHHHHTSTTCEEEEEETTEEEEEC
T ss_pred             HHHhCCccCCHHHHHHhcCEEEeCCCChhhhhHHHHHhcCCCeEEEEcCCCCcccchHHHHHhhhhheEEeeeeEEEEEe
Confidence            888999999999999999999999999999998899999999999999999889998877642 2245557777888888


Q ss_pred             CC-CCEEEEecCCCcccccCC-CChhHHHhhHHHHHHHHHHHHhcCCC-CCCCCccccCChhhHHHHHHhcCCccccccc
Q psy4626         195 PD-GKRIVLLAEGRLVNLSCS-SLPSFVVSITACTQALALIELFNAPS-GRYKSDVYLLPKKMDEYVASLHLPTFDAHLT  271 (542)
Q Consensus       195 ~d-g~~I~LLa~GrLvnl~~~-thp~~vmd~sfa~q~la~~~L~~~~~-~~~~~gv~~lp~~~d~~VA~l~L~~lg~~i~  271 (542)
                      ++ ++.+.++++|+++|+++. +||+++|++||++|+|++++||+++. ++|+++||.||+++|++||++||++||++||
T Consensus       384 ~~fg~aI~lLaeGRIVNlsS~~G~p~~vm~~sfa~Q~la~~~l~~~~~~~~~~~gv~~lp~~ld~~vA~l~l~~~g~~l~  463 (488)
T 3ond_A          384 PETNTGIIILAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWNEKSSGKYEKKVYVLPKHLDEKVAALHLEKLGAKLT  463 (488)
T ss_dssp             TTTCCEEEEEGGGSCHHHHHSCCSCHHHHHHHHHHHHHHHHHHHHTTTTCCCCSSEECCCHHHHHHHHHHHHGGGTCCCC
T ss_pred             cchHHHHHHHcCCcEEEEecCcccCcccccccHHHHHHHHHHHHhCCCccccCCCceeCCHHHHHHHHHHhchhcCCchh
Confidence            88 999999999999999987 59999999999999999999999872 3899999999999999999999999999999


Q ss_pred             cccHHHHhhcCCCCCCCCCCCcccc
Q psy4626         272 ELSDEQAKYMGLNKAGPFKPSYYSM  296 (542)
Q Consensus       272 ~lt~~~a~~lg~~e~~p~~a~ea~m  296 (542)
                      +||++|++|||+|+.+|||...+++
T Consensus       464 ~lt~~q~~y~~~~~~g~~k~~~~~y  488 (488)
T 3ond_A          464 KLSKDQADYISVPVEGPYKPFHYRY  488 (488)
T ss_dssp             CCCHHHHHHTTCCTTSCCSCTTCCC
T ss_pred             hcCHHHHHHcCCCCCCCCCccCCCC
Confidence            9999999999999999999987753

>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3

Probab=100.00  E-value=6.7e-43  Score=377.18  Aligned_cols=258  Identities=51%  Similarity=0.911  Sum_probs=232.5

Q ss_pred             ccceeecCchhhhHHHHhHHHHHHHHHHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhh
Q psy4626          38 TVPAMNVNDSVTKTKFDNLYMCRESIIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQAC  117 (542)
Q Consensus        38 ~~PV~~vn~s~~K~~fd~~~g~~~s~~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~  117 (542)
                      .+|+.++|+++.+.+|++.|++.+++++++.+.++..+.|++|+|+|+|.||+.+|++|+++|++|+++|+++.+..++.
T Consensus       218 v~p~~~vn~sVae~l~r~~~~~~~~l~~gw~r~~~~~l~GktVgIIG~G~IG~~vA~~l~~~G~~Viv~d~~~~~~~~a~  297 (479)
T 1v8b_A          218 LFTAINVNDAVTKQKYDNVYGCRHSLPDGLMRATDFLISGKIVVICGYGDVGKGCASSMKGLGARVYITEIDPICAIQAV  297 (479)
T ss_dssp             CSEEEECTTSHHHHTTHHHHHHHHHHHHHHHHHHCCCCTTSEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHH
T ss_pred             EeccCCccHHHHHHHHhchHhHHHHHhhhhhhccccccCCCEEEEEeeCHHHHHHHHHHHhCcCEEEEEeCChhhHHHHH
Confidence            34555666666666678889999999988777777789999999999999999999999999999999999998876777


Q ss_pred             cCCceeeCHHHHhcCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCCCcccChHhhcC-CCcceeeeccceeeEecCC
Q psy4626         118 MDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRT-PDLTWEKVRSQVDHVIWPD  196 (542)
Q Consensus       118 ~~G~~v~~l~e~l~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g~~eid~~aL~~-~~l~v~~~~~~v~~y~~~d  196 (542)
                      +.|+.+.+++++++.+|+||.+++++++|+.+.|+.||+|++++|+||++.++|..+|.+ ..+....+++.++.|.+|+
T Consensus       298 ~~g~~~~~l~ell~~aDiVi~~~~t~~lI~~~~l~~MK~gailiNvgrg~~EId~~aL~~~~AL~~g~I~a~lDv~plp~  377 (479)
T 1v8b_A          298 MEGFNVVTLDEIVDKGDFFITCTGNVDVIKLEHLLKMKNNAVVGNIGHFDDEIQVNELFNYKGIHIENVKPQVDRITLPN  377 (479)
T ss_dssp             TTTCEECCHHHHTTTCSEEEECCSSSSSBCHHHHTTCCTTCEEEECSSTTTSBCHHHHHTSTTCEEEEEETTEEEEECTT
T ss_pred             HcCCEecCHHHHHhcCCEEEECCChhhhcCHHHHhhcCCCcEEEEeCCCCccccchhhhccccceeeeEeeeEEEEECCC
Confidence            889998999999999999999999999999999999999999999999999999999975 4566666677889999999


Q ss_pred             CCEEEEecCCCcccccCC-CChhHHHhhHHHHHHHHHHHHhcCCCC--CCCCccccCChhhHHHHHHhcCCccccccccc
Q psy4626         197 GKRIVLLAEGRLVNLSCS-SLPSFVVSITACTQALALIELFNAPSG--RYKSDVYLLPKKMDEYVASLHLPTFDAHLTEL  273 (542)
Q Consensus       197 g~~I~LLa~GrLvnl~~~-thp~~vmd~sfa~q~la~~~L~~~~~~--~~~~gv~~lp~~~d~~VA~l~L~~lg~~i~~l  273 (542)
                      ++.+.++++++++++.++ +||.++|+.+|+.|+++++++|.++ +  +++..|+.||+.+|++||.++|+++|..+++|
T Consensus       378 ~~~l~~l~~~nvv~tH~atghp~e~~~~s~a~~~~~ni~~~~~g-~~~~l~n~V~~lp~~~de~va~l~L~~lG~~l~~l  456 (479)
T 1v8b_A          378 GNKIIVLARGRLLNLGCATGHPAFVMSFSFCNQTFAQLDLWQNK-DTNKYENKVYLLPKHLDEKVALYHLKKLNASLTEL  456 (479)
T ss_dssp             SCEEEEEGGGSBHHHHSSCCSCHHHHHHHHHHHHHHHHHHHHTT-TSSSCCSSEECCCHHHHHHHHHHHHGGGTCCCCCC
T ss_pred             CCeeeEecCCCEEEEeccCCCCchhHHHHHHHHHHHHHHHHHcC-CCCcCCcceEeCChhhHHHHHHHHHHHcCChHhhc
Confidence            999999999999999777 4999999999999999999999987 6  78889999999999999999999999999999


Q ss_pred             cHHHHhhcCCCCCCCCCCCcccc
Q psy4626         274 SDEQAKYMGLNKAGPFKPSYYSM  296 (542)
Q Consensus       274 t~~~a~~lg~~e~~p~~a~ea~m  296 (542)
                      |++|++|+++...+|+|...++|
T Consensus       457 t~~q~~yi~v~~~g~~~~~~~~~  479 (479)
T 1v8b_A          457 DDNQCQFLGVNKSGPFKSNEYRY  479 (479)
T ss_dssp             CHHHHHHHTCCTTSCCSCTTCCC
T ss_pred             ChhhhhhEeeeeCCCCCcccCCC
Confidence            99999999999999999877653

>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A*

Probab=100.00  E-value=3.2e-42  Score=373.12  Aligned_cols=256  Identities=58%  Similarity=1.011  Sum_probs=230.8

Q ss_pred             ccceeecCchhhhHHHHhHHHHHHHHHHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhh
Q psy4626          38 TVPAMNVNDSVTKTKFDNLYMCRESIIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQAC  117 (542)
Q Consensus        38 ~~PV~~vn~s~~K~~fd~~~g~~~s~~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~  117 (542)
                      .+|+.++|+++.+++|++.|++.+++++++.+.++..+.|++|+|+|+|.||+.+|++|+++|++|+++|+++.+..++.
T Consensus       238 v~n~~~vn~sVae~l~r~~~~~~~~l~~gw~~~~g~~L~GktVgIIG~G~IG~~vA~~l~~~G~~V~v~d~~~~~~~~a~  317 (494)
T 3d64_A          238 PFPAFNVNDSVTKSKFDNLYGCRESLVDGIKRATDVMIAGKIAVVAGYGDVGKGCAQSLRGLGATVWVTEIDPICALQAA  317 (494)
T ss_dssp             CSCEEECTTSHHHHHHHHHHHHHTTHHHHHHHHHCCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSCHHHHHHHH
T ss_pred             EEECCCccHHHHHHHHhhhHhhhhhhhhhhhhccccccCCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCChHhHHHHH
Confidence            34566666666777788888999999988777777889999999999999999999999999999999999998876777


Q ss_pred             cCCceeeCHHHHhcCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCCCcccChHhhcCCCcceeeeccceeeEecCCC
Q psy4626         118 MDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDG  197 (542)
Q Consensus       118 ~~G~~v~~l~e~l~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g~~eid~~aL~~~~l~v~~~~~~v~~y~~~dg  197 (542)
                      +.|+.+.+++++++.+|+||.+++++++|+++.|+.||+|++++|+||++.+||..+| . .+....+.+..+.|.+|++
T Consensus       318 ~~G~~~~~l~ell~~aDiVi~~~~t~~lI~~~~l~~MK~gAilINvgrg~veID~~aL-~-AL~~g~I~~~~Dv~plp~~  395 (494)
T 3d64_A          318 MEGYRVVTMEYAADKADIFVTATGNYHVINHDHMKAMRHNAIVCNIGHFDSEIDVAST-R-QYQWENIKPQVDHIIFPDG  395 (494)
T ss_dssp             TTTCEECCHHHHTTTCSEEEECSSSSCSBCHHHHHHCCTTEEEEECSSSSCSBCCGGG-T-TSEEEEEETTEEEEECTTS
T ss_pred             HcCCEeCCHHHHHhcCCEEEECCCcccccCHHHHhhCCCCcEEEEcCCCcchhchHHH-H-hhhcCccceeEEEEECCCC
Confidence            8899989999999999999999999999999999999999999999999988888888 3 6666666678899999999


Q ss_pred             CEEEEecCCCcccccCC-CChhHHHhhHHHHHHHHHHHHhcCCCCCCCCccccCChhhHHHHHHhcCCccccccccccHH
Q psy4626         198 KRIVLLAEGRLVNLSCS-SLPSFVVSITACTQALALIELFNAPSGRYKSDVYLLPKKMDEYVASLHLPTFDAHLTELSDE  276 (542)
Q Consensus       198 ~~I~LLa~GrLvnl~~~-thp~~vmd~sfa~q~la~~~L~~~~~~~~~~gv~~lp~~~d~~VA~l~L~~lg~~i~~lt~~  276 (542)
                      +.+.++++++++++.++ +||+++|+.+|+.|+++++++|.++ ++++..|+.+|+++|++||.++|+++|+.|++||++
T Consensus       396 ~pL~~l~~~nvv~tH~atg~~~~~~~~~~a~~~~~ni~~~~~g-~~~~n~V~~lp~~~d~~va~l~L~~~g~~~~~l~~~  474 (494)
T 3d64_A          396 KRVILLAEGRLVNLGCATGHPSFVMSNSFTNQTLAQIELFTRG-GEYANKVYVLPKHLDEKVARLHLARIGAQLSELSDD  474 (494)
T ss_dssp             CEEEEEGGGSBHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHG-GGSCSSEEECCHHHHHHHHHHHHTTTTCCCCCCCHH
T ss_pred             CchhhcCCCCEEEEeCcCCCCHHHHHHHHHHHHHHHHHHHHcC-CCCCCceeeCChhHHHHHHHHHHHHcCChHHhhChh
Confidence            99999999999999666 4999999999999999999999987 688899999999999999999999999999999999


Q ss_pred             HHhhcCCCCCCCCCCCcccc
Q psy4626         277 QAKYMGLNKAGPFKPSYYSM  296 (542)
Q Consensus       277 ~a~~lg~~e~~p~~a~ea~m  296 (542)
                      |++|+++...+|+|...++|
T Consensus       475 q~~y~~v~~~g~~~~~~~~~  494 (494)
T 3d64_A          475 QAAYIGVSKAGPFKPDHYRY  494 (494)
T ss_dssp             HHHHHTCCTTSCCSCTTCCC
T ss_pred             hHHhEeeccCCCCCcccCCC
Confidence            99999999999999876653

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=100.00  E-value=9.9e-42  Score=370.02  Aligned_cols=256  Identities=49%  Similarity=0.850  Sum_probs=228.6

Q ss_pred             ceeecCchhhhHHHHhHHHHHHHHHHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcC
Q psy4626          40 PAMNVNDSVTKTKFDNLYMCRESIIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMD  119 (542)
Q Consensus        40 PV~~vn~s~~K~~fd~~~g~~~s~~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~  119 (542)
                      |+.++|+++++..|++.|+++++.|+++.+.++..+.|++|+|+|+|+||+.+|+.|+++|++|+++|++|.++.+|.+.
T Consensus       237 ~~~~vn~sVae~~~r~l~~~~~s~~~g~~r~~~~~l~GktV~IiG~G~IG~~~A~~lka~Ga~Viv~d~~~~~~~~A~~~  316 (494)
T 3ce6_A          237 PAINVNDSVTKSKFDNKYGTRHSLIDGINRGTDALIGGKKVLICGYGDVGKGCAEAMKGQGARVSVTEIDPINALQAMME  316 (494)
T ss_dssp             CEEECTTSHHHHTTHHHHHHHHHHHHHHHHHHCCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHT
T ss_pred             ecCCccHHHHHHHHhhhhhhhhhhhHHHHhccCCCCCcCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc
Confidence            45555666666677899999999999998887667899999999999999999999999999999999999998888889


Q ss_pred             CceeeCHHHHhcCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCCCcccChHhhcCCCcceeeeccceeeEecCC-CC
Q psy4626         120 GFSVVKLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPD-GK  198 (542)
Q Consensus       120 G~~v~~l~e~l~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g~~eid~~aL~~~~l~v~~~~~~v~~y~~~d-g~  198 (542)
                      |+++.+++++++++|+||+|+|++++++.+.++.||+|++++|+|+++.++|..+|..+++....+.+..+.|.+++ ++
T Consensus       317 Ga~~~~l~e~l~~aDvVi~atgt~~~i~~~~l~~mk~ggilvnvG~~~~eId~~aL~~~aL~~~~I~~~ldv~~~~~~~~  396 (494)
T 3ce6_A          317 GFDVVTVEEAIGDADIVVTATGNKDIIMLEHIKAMKDHAILGNIGHFDNEIDMAGLERSGATRVNVKPQVDLWTFGDTGR  396 (494)
T ss_dssp             TCEECCHHHHGGGCSEEEECSSSSCSBCHHHHHHSCTTCEEEECSSSGGGBCHHHHHHTTCEEEEEETTEEEEECTTTCC
T ss_pred             CCEEecHHHHHhCCCEEEECCCCHHHHHHHHHHhcCCCcEEEEeCCCCCccCHHHHHHhhhccceEEEEEEEeecCCcch
Confidence            99888999999999999999999999988899999999999999999888998888765564445555667777777 89


Q ss_pred             EEEEecCCCcccccCCC-ChhHHHhhHHHHHHHHHHHHhcCCCCCCCCccccCChhhHHHHHHhcCCccccccccccHHH
Q psy4626         199 RIVLLAEGRLVNLSCSS-LPSFVVSITACTQALALIELFNAPSGRYKSDVYLLPKKMDEYVASLHLPTFDAHLTELSDEQ  277 (542)
Q Consensus       199 ~I~LLa~GrLvnl~~~t-hp~~vmd~sfa~q~la~~~L~~~~~~~~~~gv~~lp~~~d~~VA~l~L~~lg~~i~~lt~~~  277 (542)
                      .+.++++|+++|+.+.+ ||..+|+.+|+.|+++++++|.++ +.+...|+.+|+++|+.||.+||.+||..|++||++|
T Consensus       397 ~l~LL~~grlvnL~~~TPH~a~~~~~s~~~qa~~ai~~~~~g-~~~~~~V~~~P~~~De~vA~lhL~~lg~~l~~lt~~q  475 (494)
T 3ce6_A          397 SIIVLSEGRLLNLGNATGHPSFVMSNSFANQTIAQIELWTKN-DEYDNEVYRLPKHLDEKVARIHVEALGGHLTKLTKEQ  475 (494)
T ss_dssp             EEEEEGGGSCHHHHHSCCSCHHHHHHHHHHHHHHHHHHHHTG-GGCCSSEECCCHHHHHHHHHHHHHHHTCCCCCCCHHH
T ss_pred             HHHHHhCCCEEeccCCCCCccccchHHHHHHHHHHHHHHHcC-CCCCCEEEECHHHHHHHHHHhhHHHHHHHHHHhChhH
Confidence            99999999999999775 999999999999999999999876 5788889999999999999999999999999999999


Q ss_pred             HhhcCCCCCCCCCCCcccc
Q psy4626         278 AKYMGLNKAGPFKPSYYSM  296 (542)
Q Consensus       278 a~~lg~~e~~p~~a~ea~m  296 (542)
                      ++|+++...+|+|...++|
T Consensus       476 ~~y~~v~~~G~~k~~~~~~  494 (494)
T 3ce6_A          476 AEYLGVDVEGPYKPDHYRY  494 (494)
T ss_dssp             HHHHTCCTTSCCSCTTCCC
T ss_pred             HHHcccccCCCCCcccCCC
Confidence            9999999999999877653

>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus}

Probab=100.00  E-value=6.5e-41  Score=356.14  Aligned_cols=365  Identities=27%  Similarity=0.392  Sum_probs=259.6

Q ss_pred             CccHHHHHHHhCCCCCCCCceeeceecccHHhhhcccccceeecCchhhhHHHHhHHHHHHHHHHHHHhhcCccccCcEE
Q psy4626           1 MPGIMALRKRAGDDKPLKNARIVGCTHINAQTAAGKLTVPAMNVNDSVTKTKFDNLYMCRESIIDSLKRSTDVMFGGKQV   80 (542)
Q Consensus         1 MP~l~~l~~~~~~~~pl~G~~i~~~lh~~~~tA~~~L~~PV~~vn~s~~K~~fd~~~g~~~s~~~ai~r~~~~~l~GktV   80 (542)
                      ||+|+++|++|+.+|||+|.||++|+|+|+|||.                        .-+    .+      .-.|..|
T Consensus        27 MP~L~~~r~~~~~~kPl~G~rI~~~lH~t~~Tav------------------------lie----tL------~a~GAev   72 (464)
T 3n58_A           27 MPGLMAAREEFGKSQPLKGARISGSLHMTIQTAV------------------------LIE----TL------KVLGAEV   72 (464)
T ss_dssp             CHHHHHHHHHHTTTCTTTTCEEEEESCCSHHHHH------------------------HHH----HH------HHTTCEE
T ss_pred             CHHHHHHHHHHhccCCCCCCEEEEEEecHHHHHH------------------------HHH----HH------HHcCCeE
Confidence            9999999999999999999999999999999997                        111    21      2248999


Q ss_pred             EEEcCChhH--HHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHHHHh-----cCCcEEEEcCCCc-ccCCHHHHh
Q psy4626          81 VLCGYGEVG--KGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVI-----RTVDIVVTATGNK-NVVTREHMD  152 (542)
Q Consensus        81 vViG~G~IG--~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l-----~~aDvVi~atG~~-~lI~~e~l~  152 (542)
                      .+.++++..  ..+|.++...|..|++|.-..  ..+      +.-.++.++     ..+|+|++..|.- .++. .-..
T Consensus        73 ~~~~cN~~STqd~~aaal~~~gi~v~A~kget--~ee------y~~~~~~~l~~~~~~~p~~ilDDGgDl~~~~h-~~~~  143 (464)
T 3n58_A           73 RWASCNIFSTQDHAAAAIAATGTPVFAVKGET--LEE------YWTYTDQIFQWPDGEPSNMILDDGGDATMYIL-IGAR  143 (464)
T ss_dssp             EEECSSTTCCCHHHHHHHHHTTCCEEECTTCC--HHH------HHHHHHHTTCCTTSCCCSEEEESSSHHHHHHH-HHHH
T ss_pred             EEecCCCCCCcHHHHHHHHhcCCeEEEeCCCC--HHH------HHHHHHHHHcccCCCCCCEEEECchHHHHHHH-hhhh
Confidence            999999987  788888888999999984111  000      111123333     2489999987742 1121 0001


Q ss_pred             ccCCCeEEEeccCCCcccChHhhcC----CCc-------ceeee----ccceeeEecCCCCEEEEecCCCcccccCCCCh
Q psy4626         153 KMKNGCVVCNMGHSNTEIDVNSLRT----PDL-------TWEKV----RSQVDHVIWPDGKRIVLLAEGRLVNLSCSSLP  217 (542)
Q Consensus       153 ~mk~GailvnvG~g~~eid~~aL~~----~~l-------~v~~~----~~~v~~y~~~dg~~I~LLa~GrLvnl~~~thp  217 (542)
                      .=+.+.++-+.+..+..+-+..++.    ..-       .+.++    ..++.++.       .+.++|.|..      |
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~EeTtTGv~rL~-------~m~~~g~L~~------P  210 (464)
T 3n58_A          144 AEAGEDVLSNPQSEEEEVLFAQIKKRMAATPGFFTKQRAAIKGVTEETTTGVNRLY-------QLQKKGLLPF------P  210 (464)
T ss_dssp             HHTTCCCSSSCCSHHHHHHHHHHHHHHHHSTTHHHHHHHHCCEEEECSHHHHHHHH-------HHHHHTCCCS------C
T ss_pred             hhcccccCCCCCcHHHHHHHHHHHHHhhcCcchhHHHHhhccceeeccccchHHHH-------HHHHcCCCCC------C
Confidence            1122222211111000011111110    000       01111    11112111       2345566654      6


Q ss_pred             hHHHhhHHHHHHHHHHHHhcCCCCCCCCccccCChhhHHHHH-HhcCCcccc----ccccccHHHHhhcCC----CCCCC
Q psy4626         218 SFVVSITACTQALALIELFNAPSGRYKSDVYLLPKKMDEYVA-SLHLPTFDA----HLTELSDEQAKYMGL----NKAGP  288 (542)
Q Consensus       218 ~~vmd~sfa~q~la~~~L~~~~~~~~~~gv~~lp~~~d~~VA-~l~L~~lg~----~i~~lt~~~a~~lg~----~e~~p  288 (542)
                      ...++.|.+++.....|=..+         . +...+.+.-- .+..+++++    .|++..+++++++|+    ++.||
T Consensus       211 vinVnds~tK~~fDn~yG~~e---------s-lvdgI~Ratg~~L~GKTVgVIG~G~IGr~vA~~lrafGa~Viv~d~dp  280 (464)
T 3n58_A          211 AINVNDSVTKSKFDNKYGCKE---------S-LVDGIRRGTDVMMAGKVAVVCGYGDVGKGSAQSLAGAGARVKVTEVDP  280 (464)
T ss_dssp             EEECTTSHHHHTTHHHHHHHH---------H-HHHHHHHHHCCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred             EEeeccHhhhhhhhhhhcchH---------H-HHHHHHHhcCCcccCCEEEEECcCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            666677777754444431110         0 0011111000 234466666    899999999999999    47799


Q ss_pred             CCCCccccCCeeeeehhhhcccCcEEEEccCCCCccCHhHHhcCCCCcEEEccCCCCcccccccccCCCcceecccCCee
Q psy4626         289 FKPSYYSMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVD  368 (542)
Q Consensus       289 ~~a~ea~mdG~~v~~~~~a~~~~d~~~t~tg~~~vi~~~~~~~mk~gail~n~gh~~~Ei~~~~l~~~~~~~~~~~~~v~  368 (542)
                      .++++|.|+||++++++|+++.+|||+++||++++|+.++|++||+||||+|+|||++|||.++|.+  .++.++||||+
T Consensus       281 ~~a~~A~~~G~~vv~LeElL~~ADIVv~atgt~~lI~~e~l~~MK~GAILINvGRgdvEID~~aL~~--~~~~~ik~~v~  358 (464)
T 3n58_A          281 ICALQAAMDGFEVVTLDDAASTADIVVTTTGNKDVITIDHMRKMKDMCIVGNIGHFDNEIQVAALRN--LKWTNVKPQVD  358 (464)
T ss_dssp             HHHHHHHHTTCEECCHHHHGGGCSEEEECCSSSSSBCHHHHHHSCTTEEEEECSSSTTTBTCGGGTT--SEEEEEETTEE
T ss_pred             chhhHHHhcCceeccHHHHHhhCCEEEECCCCccccCHHHHhcCCCCeEEEEcCCCCcccCHHHHHh--CccccccCCee
Confidence            9999999999999999999999999999999999999999999999999999999999999999995  78899999999


Q ss_pred             EEEcCCCCEEEEeecCceecccCCC-CChhhhhhhhhhh--------cccCCCcchhhHH---HHHHHHHHHhhccC
Q psy4626         369 HVIWPDGKRIVLLAEGRLVNLSCSS-LPSFVVSITACTQ--------RDKSSLIPCYHLR---FASNLAKYLLNSLT  433 (542)
Q Consensus       369 ~~~~~~g~~~~ll~~GrlvNl~~~~-~p~~~~~~~~~~~--------~~~~~l~~~~~~~---~~~~va~~~l~~~~  433 (542)
                      +|++||||+||||+|||||||+||. ||+||||++|++|        +++..++|+||.|   +|++||+++|++|-
T Consensus       359 ~~~~~~g~~i~lLaeGrlvNL~~a~GhP~~vm~~sf~~Q~la~~~l~~~~~~~~~~v~~lP~~lDe~VA~l~L~~~g  435 (464)
T 3n58_A          359 LIEFPDGKRLILLSEGRLLNLGNATGHPSFVMSASFTNQVLGQIELFTRTDAYKNEVYVLPKHLDEKVARLHLDKLG  435 (464)
T ss_dssp             EEECTTSCEEEEEGGGSBHHHHHSCCSCHHHHHHHHHHHHHHHHHHHHSGGGCCSSEECCCHHHHHHHHHHHHGGGT
T ss_pred             EEEeCCCCEEEEEeCCceecccCCCCChHHHHhHHHHHHHHHHHHHHhCccccCCCeeECCHHHHHHHHHHHHHHcC
Confidence            9999999999999999999999997 9999999999994        4667899999999   99999999999984

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=100.00  E-value=3.7e-39  Score=347.52  Aligned_cols=104  Identities=51%  Similarity=1.028  Sum_probs=101.1

Q ss_pred             CCCcEEeecCCCHHHHHHHHHHHhhcC----CCceeecCCCchhhhhhh-------------------------------
Q psy4626         437 TGLPVFAWRGETEEDFWWCIDKCVNSW----QPNMILDDGGDATHWMLK-------------------------------  481 (542)
Q Consensus       437 ~g~~v~a~~g~~~~ey~~~~~~~~~~~----~p~~i~ddg~d~~~~~h~-------------------------------  481 (542)
                      +|||||||||||+|||||||+++| +|    +||||||||||||+++|+                               
T Consensus       105 ~g~~v~a~~ge~~~ey~~~~~~~l-~~~~~~~p~~i~Ddggd~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (488)
T 3ond_A          105 DSAAVFAWKGETLQEYWWCTERAL-DWGPGGGPDLIVDDGGDTTLLIHEGVKAEEIYEKSGQFPDPDSTDNAEFKIVLSI  183 (488)
T ss_dssp             HTCEEEECTTCCHHHHHHHHHHHH-CCCTTCCCSEEEESSSHHHHHHHHHHHHHHHHHHHCCCCCGGGCCCHHHHHHHHH
T ss_pred             cCCeEEEeCCCCHHHHHHHHHHHH-hcccCCCCCEEEECchHHHHHHHcchhhhcchhhccccCCCCCCCchHHHHHHHH
Confidence            699999999999999999999999 46    599999999999999999                               


Q ss_pred             ----------hccccccccceeccchhhHHHHHHHHHHcCCcccceeeeccccccccccccCCCCcccCC
Q psy4626         482 ----------KYPTMFKAIKGIVEESLTGVHRLYQLSKAGKLTVPAMNVNDSVTKTKFDNLYMCRESIID  541 (542)
Q Consensus       482 ----------~~~~~~~~~~g~~eetttgv~~l~~~~~~g~l~~p~i~vnd~~~k~~fdn~yg~~~s~~d  541 (542)
                                +||+++++|+|+||||||||+||++|.++|.|+||+||||||+||++|||+|||+||++|
T Consensus       184 ~~~~~~~~~~~~~~~~~~i~G~~EeTttGv~rL~~~~~~g~L~iPvinvnDs~tK~~fDn~yGt~~sl~d  253 (488)
T 3ond_A          184 IKEGLKTDPKRYHKMKDRVVGVSEETTTGVKRLYQMQANGTLLFPAINVNDSVTKSKFDNLYGCRHSLPD  253 (488)
T ss_dssp             HHHHHTTCTTHHHHHHHHCCEEEECSHHHHHHHHHHHHTTCCCSCEEECTTSHHHHTTHHHHHHHHHHHH
T ss_pred             HHHHHhhCcchhHHHHhhcceeEecccccHHHHHHHHHcCCCCCceecccchhhhhHhhhhccccHHHHH
Confidence                      999999999999999999999999999999999999999999999999999999999876

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=100.00  E-value=6.5e-39  Score=340.40  Aligned_cols=315  Identities=39%  Similarity=0.553  Sum_probs=227.6

Q ss_pred             CccccCcEEEEEcCChhH-HHHHHHHHhCCCEEEEEeCCchh----hhhh-hcCCceee-----CHH-------HHh---
Q psy4626          72 DVMFGGKQVVLCGYGEVG-KGCCQSLKGLGCVIYITEIDPIC----ALQA-CMDGFSVV-----KLN-------EVI---  130 (542)
Q Consensus        72 ~~~l~GktVvViG~G~IG-~~vA~~l~~~Ga~Viv~d~dp~r----~~~A-~~~G~~v~-----~l~-------e~l---  130 (542)
                      ...+.|.+++.+=-=.+= --++..|++.||+|.++--+|.-    ...| ...|..+.     +.+       .++   
T Consensus        49 ~~pl~G~ri~~~lH~~~~Ta~l~~tL~~~GA~v~~~~~n~~stqd~~aaal~~~gi~v~a~~g~~~~ey~~~~~~~~~~~  128 (435)
T 3gvp_A           49 EKPLAGAKIVGCTHITAQTAVLMETLGALGAQCRWAACNIYSTLNEVAAALAESGFPVFAWKGESEDDFWWCIDRCVNVE  128 (435)
T ss_dssp             TCTTTTCEEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSCCCHHHHHHHHHHTCCEECCTTCCHHHHHHHHHHHHCBT
T ss_pred             cCCCCCCEEEEEEccHHHHHHHHHHHHHCCCEEEEEecCCCcChHHHHHHHHhcCCeEEEecCCCHHHHHHHHHHHHhcc
Confidence            356788887644322222 34467788999988887555531    1111 23466543     222       223   


Q ss_pred             -cCCcEEEEcCCCc-ccC---CHHHHhccCCCeEEEeccCCCcccChHhhcCCCcceeeeccceeeEecCCCCEEEEecC
Q psy4626         131 -RTVDIVVTATGNK-NVV---TREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIVLLAE  205 (542)
Q Consensus       131 -~~aDvVi~atG~~-~lI---~~e~l~~mk~GailvnvG~g~~eid~~aL~~~~l~v~~~~~~v~~y~~~dg~~I~LLa~  205 (542)
                       ..+|+|++..|.- .++   -.+.++.++.++....+|       +.+|.+                        +.++
T Consensus       129 ~~~p~~ilDdGgdl~~~~h~~~~~~~~~i~G~~EeTttG-------v~rl~~------------------------~~~~  177 (435)
T 3gvp_A          129 GWQPNMILDDGGDLTHWIYKKYPNMFKKIKGIVEESVTG-------VHRLYQ------------------------LSKA  177 (435)
T ss_dssp             TBCCSEEEESSSHHHHHHHHHCHHHHHTCCEEEECCHHH-------HHHHTC------------------------C--C
T ss_pred             CCCCcEEEecchHHHHHHHHHhHHHHhhcceeEeccchh-------HHHHHH------------------------HHHc
Confidence             3689999988742 122   134566666666666666       455542                        3344


Q ss_pred             CCcccccCCCChhHHHhhHHHHHHHHHHHHhcCCCCCCCCccccCChhhHHHHH-HhcCCcccc----ccccccHHHHhh
Q psy4626         206 GRLVNLSCSSLPSFVVSITACTQALALIELFNAPSGRYKSDVYLLPKKMDEYVA-SLHLPTFDA----HLTELSDEQAKY  280 (542)
Q Consensus       206 GrLvnl~~~thp~~vmd~sfa~q~la~~~L~~~~~~~~~~gv~~lp~~~d~~VA-~l~L~~lg~----~i~~lt~~~a~~  280 (542)
                      |.|..      |.+.++.|.+++.....|         ..+... -..+.+.-- .+..++.++    .|++..++++++
T Consensus       178 g~L~~------Pvi~vnds~tK~~fDn~y---------Gt~~s~-~~gi~rat~~~L~GktV~ViG~G~IGk~vA~~Lra  241 (435)
T 3gvp_A          178 GKLCV------PAMNVNDSVTKQKFDNLY---------CCRESI-LDGLKRTTDMMFGGKQVVVCGYGEVGKGCCAALKA  241 (435)
T ss_dssp             CCCCS------CEEECTTCHHHHHHHTHH---------HHHHHH-HHHHHHHHCCCCTTCEEEEECCSHHHHHHHHHHHH
T ss_pred             CCCCC------CEEEecchhhhhhhhhhh---------hhHHHH-HHHHHHhhCceecCCEEEEEeeCHHHHHHHHHHHH
Confidence            44443      444445555553332221         111000 001111000 123345554    899999999999


Q ss_pred             cCC----CCCCCCCCCccccCCeeeeehhhhcccCcEEEEccCCCCccCHhHHhcCCCCcEEEccCCCCcccccccccCC
Q psy4626         281 MGL----NKAGPFKPSYYSMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTP  356 (542)
Q Consensus       281 lg~----~e~~p~~a~ea~mdG~~v~~~~~a~~~~d~~~t~tg~~~vi~~~~~~~mk~gail~n~gh~~~Ei~~~~l~~~  356 (542)
                      +|+    ++.+|.++++|.|+||++++++|+++.+||||++||++++|+.++|+.||+|++|+|+|||++|||+++|...
T Consensus       242 ~Ga~Viv~D~dp~ra~~A~~~G~~v~~Leeal~~ADIVi~atgt~~lI~~e~l~~MK~gailINvgrg~~EId~~~L~~~  321 (435)
T 3gvp_A          242 MGSIVYVTEIDPICALQACMDGFRLVKLNEVIRQVDIVITCTGNKNVVTREHLDRMKNSCIVCNMGHSNTEIDVASLRTP  321 (435)
T ss_dssp             TTCEEEEECSCHHHHHHHHHTTCEECCHHHHTTTCSEEEECSSCSCSBCHHHHHHSCTTEEEEECSSTTTTBTGGGGCST
T ss_pred             CCCEEEEEeCChhhhHHHHHcCCEeccHHHHHhcCCEEEECCCCcccCCHHHHHhcCCCcEEEEecCCCccCCHHHHHhh
Confidence            999    4778999999999999999999999999999999999999999999999999999999999999999999888


Q ss_pred             CcceecccCCeeEEEcCCCCEEEEeecCceecccCCCCChhhhhhhhhhh--------ccc-CCCcchhhHH---HHHHH
Q psy4626         357 DLTWEKVRSQVDHVIWPDGKRIVLLAEGRLVNLSCSSLPSFVVSITACTQ--------RDK-SSLIPCYHLR---FASNL  424 (542)
Q Consensus       357 ~~~~~~~~~~v~~~~~~~g~~~~ll~~GrlvNl~~~~~p~~~~~~~~~~~--------~~~-~~l~~~~~~~---~~~~v  424 (542)
                      +.++.++||++++|.++|||+|+||++||||||+||.||+||||++|++|        +++ +.++|+||.|   +|++|
T Consensus       322 ~~~~~~ir~~v~~y~~~dg~~I~LLAeGrLvNl~~~~hp~~vm~~sf~~q~la~~~l~~~~~~~~~~~v~~lp~~~d~~v  401 (435)
T 3gvp_A          322 ELTWERVRSQVDHVIWPDGKRIVLLAEGRLLNLSCSTVPTFVLSITATTQALALIELYNAPEGRYKQDVYLLPKKMDEYV  401 (435)
T ss_dssp             TCEEEEEETTEEEEECTTSCEEEEEGGGSBHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCTTTSCSSEEECCHHHHHHH
T ss_pred             cceeEEEEcCeeeEEcCCCcEEEEecCCCEeeecCCCCcHHHHhHHHHHHHHHHHHHHhCcccccCCCeeeCCHHHHHHH
Confidence            88999999999999999999999999999999999999999999999994        353 5899999999   99999


Q ss_pred             HHHHhhccC
Q psy4626         425 AKYLLNSLT  433 (542)
Q Consensus       425 a~~~l~~~~  433 (542)
                      |+++|.+|-
T Consensus       402 A~~~l~~~g  410 (435)
T 3gvp_A          402 ASLHLPTFD  410 (435)
T ss_dssp             HHHHGGGGT
T ss_pred             HHHHHHhcC
Confidence            999999984

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*

Probab=100.00  E-value=4.9e-38  Score=334.46  Aligned_cols=166  Identities=33%  Similarity=0.568  Sum_probs=155.8

Q ss_pred             ccccccHHHHhhcCC----CCCCCCCCCccccCCeeeeehhhhcccCcEEEEccCCCCccCHhHHhcCCCCcEEEccCCC
Q psy4626         269 HLTELSDEQAKYMGL----NKAGPFKPSYYSMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHS  344 (542)
Q Consensus       269 ~i~~lt~~~a~~lg~----~e~~p~~a~ea~mdG~~v~~~~~a~~~~d~~~t~tg~~~vi~~~~~~~mk~gail~n~gh~  344 (542)
                      .+++..+++++++|+    ++.+|.++.+|.++||++++++|+++.+|||++++|++++|+.++|+.||+|+||+|+|||
T Consensus       221 ~IG~~vA~~Lka~Ga~Viv~D~~p~~a~~A~~~G~~~~sL~eal~~ADVVilt~gt~~iI~~e~l~~MK~gAIVINvgRg  300 (436)
T 3h9u_A          221 DVGKGCAAALRGFGARVVVTEVDPINALQAAMEGYQVLLVEDVVEEAHIFVTTTGNDDIITSEHFPRMRDDAIVCNIGHF  300 (436)
T ss_dssp             HHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECCHHHHTTTCSEEEECSSCSCSBCTTTGGGCCTTEEEEECSSS
T ss_pred             HHHHHHHHHHHHCCCEEEEECCChhhhHHHHHhCCeecCHHHHHhhCCEEEECCCCcCccCHHHHhhcCCCcEEEEeCCC
Confidence            888889999999999    4778999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcccccccccCCCcceecccCCeeEEEcCCCCEEEEeecCceecccCCC-CChhhhhhhhhhh--------cccC--CCc
Q psy4626         345 NTEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIVLLAEGRLVNLSCSS-LPSFVVSITACTQ--------RDKS--SLI  413 (542)
Q Consensus       345 ~~Ei~~~~l~~~~~~~~~~~~~v~~~~~~~g~~~~ll~~GrlvNl~~~~-~p~~~~~~~~~~~--------~~~~--~l~  413 (542)
                      ++|||+++|.+.+.++.++||+|+.|.++|||+|+||+|||||||+||. ||+||||++|++|        +++.  .++
T Consensus       301 ~vEID~~~L~~~~~~~~~ir~~vd~y~~~dg~~I~LLaeGrLvNl~~~~Ghp~~vm~~sf~~q~la~~~l~~~~~~~~~~  380 (436)
T 3h9u_A          301 DTEIQVAWLKANAKERVEVKPQVDRYTMANGRHIILLAEGRLVNLGCASGHPSFVMSNSFCNQVLAQIELWTNRDTGKYP  380 (436)
T ss_dssp             GGGBCHHHHHHHCSEEEEEETTEEEEECTTSCEEEEEGGGSCHHHHHSCCSCHHHHHHHHHHHHHHHHHHHHTTTTTSSC
T ss_pred             CCccCHHHHHhhcCceEeecCCceEEEcCCCCEEEEecCCCeecccCCCCChHHHhhHHHHHHHHHHHHHHhCCCcccCC
Confidence            9999999999888889999999999999999999999999999999998 9999999999994        4554  899


Q ss_pred             ch----hhHH---HHHHHHHHHhhccCC
Q psy4626         414 PC----YHLR---FASNLAKYLLNSLTS  434 (542)
Q Consensus       414 ~~----~~~~---~~~~va~~~l~~~~~  434 (542)
                      |+    ||.|   +|++||++||++|--
T Consensus       381 ~~~~~~v~~lp~~~d~~vA~~~l~~~g~  408 (436)
T 3h9u_A          381 RGAKAQVYFLPKKLDEKVAALHLGKLGA  408 (436)
T ss_dssp             C---CCEEECCHHHHHHHHHHHHHHHTC
T ss_pred             CCCCceeeeCCHHHHHHHHHHHHHHcCC
Confidence            99    9999   999999999999843

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=99.95  E-value=8.5e-30  Score=276.52  Aligned_cols=110  Identities=54%  Similarity=1.007  Sum_probs=104.3

Q ss_pred             ccCCCCCCCcEEeecCCCHHHHHHHHHHHhhcC----CC-ceeecCCCchhhhhh-----------------h--h----
Q psy4626         431 SLTSSYTGLPVFAWRGETEEDFWWCIDKCVNSW----QP-NMILDDGGDATHWML-----------------K--K----  482 (542)
Q Consensus       431 ~~~~~~~g~~v~a~~g~~~~ey~~~~~~~~~~~----~p-~~i~ddg~d~~~~~h-----------------~--~----  482 (542)
                      ..+.++.|||||||||||+|||||||+++| +|    +| |||+|||||||+++|                 +  +    
T Consensus       111 ~~~~~~~g~~v~a~~g~~~~~y~~~~~~~~-~~~~~~~~~~~i~ddggd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (494)
T 3ce6_A          111 GTPDEPKGVPVFAWKGETLEEYWWAAEQML-TWPDPDKPANMILDDGGDATMLVLRGMQYEKAGVVPPAEEDDPAEWKVF  189 (494)
T ss_dssp             CCSSSCCSCCEECCTTCCHHHHHHHHHHHH-CCSSTTSCCCEEEESSSHHHHHHHHHHHHHHHTSCCCCCTTSCHHHHHH
T ss_pred             ccccCCCCeEEEEeCCCCHHHHHHHHHHHH-hccccCCCceEEeecchHHHHHHHcchhhhcccccCCcccCchHHHHHH
Confidence            467889999999999999999999999999 47    67 999999999999999                 5  6    


Q ss_pred             --------------ccccccccceeccchhhHHHHHHHHHHcCCcccceeeeccccccccccccCCCCcccCC
Q psy4626         483 --------------YPTMFKAIKGIVEESLTGVHRLYQLSKAGKLTVPAMNVNDSVTKTKFDNLYMCRESIID  541 (542)
Q Consensus       483 --------------~~~~~~~~~g~~eetttgv~~l~~~~~~g~l~~p~i~vnd~~~k~~fdn~yg~~~s~~d  541 (542)
                                    ||++++++.|++|||++||+||++|.+.|++.+|++++|||++|++|||+|||++|+++
T Consensus       190 ~~~~~~~l~~~~~~~p~~~~~i~GvveetgtGVd~l~a~~~~Gilv~~~~~vn~sVae~~~r~l~~~~~s~~~  262 (494)
T 3ce6_A          190 LNLLRTRFETDKDKWTKIAESVKGVTEETTTGVLRLYQFAAAGDLAFPAINVNDSVTKSKFDNKYGTRHSLID  262 (494)
T ss_dssp             HHHHHHHHHHCSSHHHHHHHHCCCEEECSHHHHHHHHHHHHTTCCCSCEEECTTSHHHHTTHHHHHHHHHHHH
T ss_pred             HHHHHHHhhcCcccchhhhcCeEEEEEEeCCChhHHHHHHHcCCEEEecCCccHHHHHHHHhhhhhhhhhhhH
Confidence                          99999999999999999999999999999999999999999999999999999998764

>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3

Probab=99.94  E-value=4.1e-28  Score=261.95  Aligned_cols=104  Identities=47%  Similarity=0.940  Sum_probs=99.1

Q ss_pred             CCCcEEeecCCCHHHHHHHHHHHhhcC------CCceeecCCCchhhhhh----------------------h--h----
Q psy4626         437 TGLPVFAWRGETEEDFWWCIDKCVNSW------QPNMILDDGGDATHWML----------------------K--K----  482 (542)
Q Consensus       437 ~g~~v~a~~g~~~~ey~~~~~~~~~~~------~p~~i~ddg~d~~~~~h----------------------~--~----  482 (542)
                      .|||||||||||+|||||||+++| +|      +||||+|||||||+++|                      +  +    
T Consensus        95 ~gi~v~a~~g~~~~ey~~~~~~~l-~~~~~~~~~~~~i~ddggd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (479)
T 1v8b_A           95 ENVTVFAWKNETLEEYWWCVESAL-TWGDGDDNGPDMIVDDGGDATLLVHKGVEYEKLYEEKNILPDPEKAKNEEERCFL  173 (479)
T ss_dssp             TTEEEECCTTCCHHHHHHHHHHHH-CCSSSSSCSCSEEEESSSHHHHHHHHHHHHHHHHHHHCCCCCGGGCSSHHHHHHH
T ss_pred             CCceEEEeCCCCHHHHHHHHHHHh-cCcccccCCCCEEEeccchHHHHHHcchhhhhccccccccCCccccCchHHHHHH
Confidence            599999999999999999999999 46      89999999999999999                      3  4    


Q ss_pred             -------------ccccccccceeccchhhHHHHHHHHHHcCCcccceeeeccccccccccccCCCCcccCC
Q psy4626         483 -------------YPTMFKAIKGIVEESLTGVHRLYQLSKAGKLTVPAMNVNDSVTKTKFDNLYMCRESIID  541 (542)
Q Consensus       483 -------------~~~~~~~~~g~~eetttgv~~l~~~~~~g~l~~p~i~vnd~~~k~~fdn~yg~~~s~~d  541 (542)
                                   ||+|+++++|++|||+|||+||.+|.+.|++.+|++++|+|+++++|+|+|||+||++|
T Consensus       174 ~~l~~~la~~~~~~~~l~~~l~gi~eet~~Gvd~l~a~~~~Gilv~p~~~vn~sVae~l~r~~~~~~~~l~~  245 (479)
T 1v8b_A          174 TLLKNSILKNPKKWTNIAKKIIGVSEETTTGVLRLKKMDKQNELLFTAINVNDAVTKQKYDNVYGCRHSLPD  245 (479)
T ss_dssp             HHHHHHHTTCTTHHHHHHTTCCEEEECSHHHHHHHHHHHHTTCCCSEEEECTTSHHHHTTHHHHHHHHHHHH
T ss_pred             HHHHHhhhcChhhHHHHhcCeEEEEEeeCccHhHHHHHHHcCCEEeccCCccHHHHHHHHhchHhHHHHHhh
Confidence                         89999999999999999999999999999999999999999999999999999998754

>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A*

Probab=99.90  E-value=2.4e-25  Score=241.22  Aligned_cols=104  Identities=56%  Similarity=1.010  Sum_probs=99.5

Q ss_pred             CCCcEEeecCCCHHHHHHHHHHHhhcC----CCceeecCCCchhhhhh----------------h--h------------
Q psy4626         437 TGLPVFAWRGETEEDFWWCIDKCVNSW----QPNMILDDGGDATHWML----------------K--K------------  482 (542)
Q Consensus       437 ~g~~v~a~~g~~~~ey~~~~~~~~~~~----~p~~i~ddg~d~~~~~h----------------~--~------------  482 (542)
                      .|||||||||||.||||||++++| +|    .||+|+|||||++.++|                +  +            
T Consensus       123 ~gi~v~a~kget~~ey~~~~~~~l-~~~~~~~p~~i~Ddggd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~la  201 (494)
T 3d64_A          123 AGTPVFAFKGESLDEYWEFSHRIF-EWPNGEFANMILDDGGDATLLLILGSKAEKDRSVIARPTNEEEVALFKSIERHLE  201 (494)
T ss_dssp             TTCCEECCTTCCHHHHHHHHHHTT-CCSTTCCCCEEEESSSHHHHHHHHHHHHHHCGGGGTCCCSHHHHHHHHHHHHHHT
T ss_pred             CCceEEEecCCCHHHHHHHHHHHh-ccccCCCCceeecCCcceeehhhccchhhccccccCCccchhHHHHHHHHHHhhc
Confidence            599999999999999999999999 47    79999999999999999                5  5            


Q ss_pred             -----ccccccccceeccchhhHHHHHHHHHHcCCcccceeeeccccccccccccCCCCcccCC
Q psy4626         483 -----YPTMFKAIKGIVEESLTGVHRLYQLSKAGKLTVPAMNVNDSVTKTKFDNLYMCRESIID  541 (542)
Q Consensus       483 -----~~~~~~~~~g~~eetttgv~~l~~~~~~g~l~~p~i~vnd~~~k~~fdn~yg~~~s~~d  541 (542)
                           ||+++++++|++|||++||+||.+|.+.|++.+|+++||+|++|++|+|+|||++|++|
T Consensus       202 ~~~~~~~~l~~~l~gi~eet~~Gvd~l~a~~~~Gilv~n~~~vn~sVae~l~r~~~~~~~~l~~  265 (494)
T 3d64_A          202 IDGSWYSKRLAHIKGVTEETTTGVHRLYQMEKDGRLPFPAFNVNDSVTKSKFDNLYGCRESLVD  265 (494)
T ss_dssp             TCTTTTHHHHTTCCCEEECSHHHHHHHHHHHHTTCCCSCEEECTTSHHHHHHHHHHHHHTTHHH
T ss_pred             cChHhHHHHhhCcEEEEEEcccCHhhHHHHHHCCCEEEECCCccHHHHHHHHhhhHhhhhhhhh
Confidence                 89999999999999999999999999999999999999999999999999999999864

>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP}

Probab=99.58  E-value=2.2e-14  Score=149.35  Aligned_cols=153  Identities=18%  Similarity=0.320  Sum_probs=110.2

Q ss_pred             ceecccHHhhhcccccceeecCchhhhHHHHhHHHHHHHHH------H-HHHh----------hcCccccCcEEEEEcCC
Q psy4626          24 GCTHINAQTAAGKLTVPAMNVNDSVTKTKFDNLYMCRESII------D-SLKR----------STDVMFGGKQVVLCGYG   86 (542)
Q Consensus        24 ~~lh~~~~tA~~~L~~PV~~vn~s~~K~~fd~~~g~~~s~~------~-ai~r----------~~~~~l~GktVvViG~G   86 (542)
                      |..|++...+. ...++|+++.+.......+...+.--++.      + .++.          ..+..+.|++|+|+|+|
T Consensus       104 G~D~id~~~a~-~~gI~V~n~pg~~~~~vAE~a~~l~L~~~R~~~~~~~~~r~g~W~~~~~~~~~g~~l~gktvGIIGlG  182 (345)
T 4g2n_A          104 GYDHIDMAAAR-SLGIKVLHTPDVLSDACAEIAMLLVLNACRRGYEADRMVRSGSWPGWGPTQLLGMGLTGRRLGIFGMG  182 (345)
T ss_dssp             CCTTBCHHHHH-HTTCEEECCCSCCHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCCCCTTTTCBCCCTTCEEEEESCS
T ss_pred             cccccCHHHHH-hCCEEEEECCcccchHHHHHHHHHHHHHHhCHHHHHHHHHcCCCcccCcccccccccCCCEEEEEEeC
Confidence            66788887664 45778888876544433333222211111      0 1110          11357899999999999


Q ss_pred             hhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceee-CHHHHhcCCcEEEEcCC----CcccCCHHHHhccCCCeEEE
Q psy4626          87 EVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVV-KLNEVIRTVDIVVTATG----NKNVVTREHMDKMKNGCVVC  161 (542)
Q Consensus        87 ~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~-~l~e~l~~aDvVi~atG----~~~lI~~e~l~~mk~Gailv  161 (542)
                      .||+.+|++|+++|++|+++|+++.....+.  |+... +++++++++|+|+.+..    +.++++++.|+.||+|+++|
T Consensus       183 ~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~--g~~~~~~l~ell~~sDvV~l~~Plt~~T~~li~~~~l~~mk~gailI  260 (345)
T 4g2n_A          183 RIGRAIATRARGFGLAIHYHNRTRLSHALEE--GAIYHDTLDSLLGASDIFLIAAPGRPELKGFLDHDRIAKIPEGAVVI  260 (345)
T ss_dssp             HHHHHHHHHHHTTTCEEEEECSSCCCHHHHT--TCEECSSHHHHHHTCSEEEECSCCCGGGTTCBCHHHHHHSCTTEEEE
T ss_pred             hhHHHHHHHHHHCCCEEEEECCCCcchhhhc--CCeEeCCHHHHHhhCCEEEEecCCCHHHHHHhCHHHHhhCCCCcEEE
Confidence            9999999999999999999998775433232  66665 89999999999999753    67899999999999999999


Q ss_pred             eccCCC---cccChHhhcCCC
Q psy4626         162 NMGHSN---TEIDVNSLRTPD  179 (542)
Q Consensus       162 nvG~g~---~eid~~aL~~~~  179 (542)
                      |+|||.   .+...++|..+.
T Consensus       261 N~aRG~~vde~aL~~aL~~g~  281 (345)
T 4g2n_A          261 NISRGDLINDDALIEALRSKH  281 (345)
T ss_dssp             ECSCGGGBCHHHHHHHHHHTS
T ss_pred             ECCCCchhCHHHHHHHHHhCC
Confidence            999995   334455666553

>3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus}

Probab=99.58  E-value=6.8e-15  Score=152.65  Aligned_cols=153  Identities=13%  Similarity=0.219  Sum_probs=111.9

Q ss_pred             ceecccHHhhhcccccceeecCchhhhHHHHhHHHHHHHHH-------HHHHh--------hcCccccCcEEEEEcCChh
Q psy4626          24 GCTHINAQTAAGKLTVPAMNVNDSVTKTKFDNLYMCRESII-------DSLKR--------STDVMFGGKQVVLCGYGEV   88 (542)
Q Consensus        24 ~~lh~~~~tA~~~L~~PV~~vn~s~~K~~fd~~~g~~~s~~-------~ai~r--------~~~~~l~GktVvViG~G~I   88 (542)
                      |..|++.+.+. ...++|+++.+.......+...+.-.++.       +.+++        ..+..+.|++++|+|+|.|
T Consensus        74 G~d~id~~~~~-~~gI~v~n~p~~~~~~vAE~~~~l~L~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~g~tvGIiG~G~I  152 (334)
T 3kb6_A           74 GFDHIDLDYCK-KKGILVTHIPAYSPESVAEHTFAMILTLVKRLKRIEDRVKKLNFSQDSEILARELNRLTLGVIGTGRI  152 (334)
T ss_dssp             CCTTBCHHHHH-HHTCEEECCTTSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCGGGCBCCGGGSEEEEECCSHH
T ss_pred             ccchhcHHHHH-HCCCEEEECCCcCcHHHHHHHHHHHHHHhhccccccccccccccccccccccceecCcEEEEECcchH
Confidence            56688877664 44678888876544443333222211111       11111        1235688999999999999


Q ss_pred             HHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCCcEEEEcC----CCcccCCHHHHhccCCCeEEEecc
Q psy4626          89 GKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTAT----GNKNVVTREHMDKMKNGCVVCNMG  164 (542)
Q Consensus        89 G~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~aDvVi~at----G~~~lI~~e~l~~mk~GailvnvG  164 (542)
                      |+.+|+++++||++|+++|+.+.  ......++...+++++++.||+|+.+.    .|+++|+++.|++||+|+++||+|
T Consensus       153 G~~va~~~~~fg~~v~~~d~~~~--~~~~~~~~~~~~l~ell~~sDivslh~Plt~~T~~li~~~~l~~mk~~a~lIN~a  230 (334)
T 3kb6_A          153 GSRVAMYGLAFGMKVLCYDVVKR--EDLKEKGCVYTSLDELLKESDVISLHVPYTKETHHMINEERISLMKDGVYLINTA  230 (334)
T ss_dssp             HHHHHHHHHHTTCEEEEECSSCC--HHHHHTTCEECCHHHHHHHCSEEEECCCCCTTTTTCBCHHHHHHSCTTEEEEECS
T ss_pred             HHHHHHhhcccCceeeecCCccc--hhhhhcCceecCHHHHHhhCCEEEEcCCCChhhccCcCHHHHhhcCCCeEEEecC
Confidence            99999999999999999986543  233456777889999999999999953    588999999999999999999999


Q ss_pred             CCC---cccChHhhcCCC
Q psy4626         165 HSN---TEIDVNSLRTPD  179 (542)
Q Consensus       165 ~g~---~eid~~aL~~~~  179 (542)
                      ||.   .+..+++|..+.
T Consensus       231 RG~iVde~aL~~aL~~g~  248 (334)
T 3kb6_A          231 RGKVVDTDALYRAYQRGK  248 (334)
T ss_dssp             CGGGBCHHHHHHHHHTTC
T ss_pred             ccccccHHHHHHHHHhCC
Confidence            995   344466777664

>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A*

Probab=99.57  E-value=1.7e-14  Score=149.38  Aligned_cols=155  Identities=15%  Similarity=0.169  Sum_probs=112.7

Q ss_pred             ceecccHHhhhcccccceeecCchhhhHHHHhHHHHHHHHHH-------HHHh---------hcCccccCcEEEEEcCCh
Q psy4626          24 GCTHINAQTAAGKLTVPAMNVNDSVTKTKFDNLYMCRESIID-------SLKR---------STDVMFGGKQVVLCGYGE   87 (542)
Q Consensus        24 ~~lh~~~~tA~~~L~~PV~~vn~s~~K~~fd~~~g~~~s~~~-------ai~r---------~~~~~l~GktVvViG~G~   87 (542)
                      |..|++...+. ...++|+++.+.......+...+.--++..       .+++         ..+..+.|++|+|+|+|.
T Consensus        77 G~d~id~~~~~-~~gI~v~n~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~l~g~tvGIIG~G~  155 (330)
T 4e5n_A           77 GFDNFDVDACT-ARGVWLTFVPDLLTVPTAELAIGLAVGLGRHLRAADAFVRSGKFRGWQPRFYGTGLDNATVGFLGMGA  155 (330)
T ss_dssp             CCTTBCHHHHH-HTTCEEECCSSTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCSCCSCCCCCCSTTCEEEEECCSH
T ss_pred             cccccCHHHHH-hcCcEEEeCCCCCchHHHHHHHHHHHHHHhChHHHHHHHHhCCccccCccccCCccCCCEEEEEeeCH
Confidence            55688776654 457788888775544443333322211110       1111         123468999999999999


Q ss_pred             hHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCCcEEEEcC----CCcccCCHHHHhccCCCeEEEec
Q psy4626          88 VGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTAT----GNKNVVTREHMDKMKNGCVVCNM  163 (542)
Q Consensus        88 IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~aDvVi~at----G~~~lI~~e~l~~mk~Gailvnv  163 (542)
                      ||+.+|+.|+++|++|+++|+++.....+...|+...+++++++.+|+|+.+.    .+.++++.+.|+.||+|+++||+
T Consensus       156 IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~  235 (330)
T 4e5n_A          156 IGLAMADRLQGWGATLQYHEAKALDTQTEQRLGLRQVACSELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNP  235 (330)
T ss_dssp             HHHHHHHHTTTSCCEEEEECSSCCCHHHHHHHTEEECCHHHHHHHCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEEC
T ss_pred             HHHHHHHHHHHCCCEEEEECCCCCcHhHHHhcCceeCCHHHHHhhCCEEEEcCCCCHHHHHHhCHHHHhhCCCCcEEEEC
Confidence            99999999999999999999887544445556777779999999999999964    47789999999999999999999


Q ss_pred             cCCC---cccChHhhcCCC
Q psy4626         164 GHSN---TEIDVNSLRTPD  179 (542)
Q Consensus       164 G~g~---~eid~~aL~~~~  179 (542)
                      |||.   .+...++|..+.
T Consensus       236 arg~~vd~~aL~~aL~~g~  254 (330)
T 4e5n_A          236 CRGSVVDEAAVLAALERGQ  254 (330)
T ss_dssp             SCGGGBCHHHHHHHHHHTS
T ss_pred             CCCchhCHHHHHHHHHhCC
Confidence            9995   233345666543

>4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli}

Probab=99.57  E-value=4.4e-14  Score=148.17  Aligned_cols=155  Identities=11%  Similarity=0.197  Sum_probs=109.8

Q ss_pred             ceecccHHhhhcccccceeecCchhhhHHHHhHHHHHHHHHH-------HHHh----------hcCccccCcEEEEEcCC
Q psy4626          24 GCTHINAQTAAGKLTVPAMNVNDSVTKTKFDNLYMCRESIID-------SLKR----------STDVMFGGKQVVLCGYG   86 (542)
Q Consensus        24 ~~lh~~~~tA~~~L~~PV~~vn~s~~K~~fd~~~g~~~s~~~-------ai~r----------~~~~~l~GktVvViG~G   86 (542)
                      |..|++.+.+. ...++|+++.+.......+...+.--++..       .++.          ..+..+.|++|+|+|+|
T Consensus       107 G~d~iD~~~a~-~~GI~V~n~~~~~~~~vAE~~l~l~L~~~R~~~~~~~~~r~g~~~w~~~~~~~~~~l~gktvGIIGlG  185 (365)
T 4hy3_A          107 LLNNMPYEVLF-QRGIHVVTTGQVFAEPVAEIGLGFALALARGIVDADIAFQEGTELWGGEGNASARLIAGSEIGIVGFG  185 (365)
T ss_dssp             CCSCSCTTHHH-HSCCEEEECGGGGHHHHHHHHHHHHHHHHHTTTHHHHHHHHTCCCCSSSSTTSCCCSSSSEEEEECCS
T ss_pred             ccCcccHHHHh-cCCeEEEeCCCccchHHHHHHHHHHHHHHhchhHHHHHHHcCCccccccccccccccCCCEEEEecCC
Confidence            34577766553 456788888775544443333322211111       0110          12356889999999999


Q ss_pred             hhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCCcEEEEcC----CCcccCCHHHHhccCCCeEEEe
Q psy4626          87 EVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTAT----GNKNVVTREHMDKMKNGCVVCN  162 (542)
Q Consensus        87 ~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~aDvVi~at----G~~~lI~~e~l~~mk~Gailvn  162 (542)
                      .||+.+|+++++||++|+++|+++. ...+...|+...+++++++.+|+|+.+.    .+.++++++.|+.||+|+++||
T Consensus       186 ~IG~~vA~~l~~fG~~V~~~d~~~~-~~~~~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~~mk~gailIN  264 (365)
T 4hy3_A          186 DLGKALRRVLSGFRARIRVFDPWLP-RSMLEENGVEPASLEDVLTKSDFIFVVAAVTSENKRFLGAEAFSSMRRGAAFIL  264 (365)
T ss_dssp             HHHHHHHHHHTTSCCEEEEECSSSC-HHHHHHTTCEECCHHHHHHSCSEEEECSCSSCC---CCCHHHHHTSCTTCEEEE
T ss_pred             cccHHHHHhhhhCCCEEEEECCCCC-HHHHhhcCeeeCCHHHHHhcCCEEEEcCcCCHHHHhhcCHHHHhcCCCCcEEEE
Confidence            9999999999999999999998753 3345567888889999999999999964    4788999999999999999999


Q ss_pred             ccCCC---cccChHhhcCCCc
Q psy4626         163 MGHSN---TEIDVNSLRTPDL  180 (542)
Q Consensus       163 vG~g~---~eid~~aL~~~~l  180 (542)
                      +|||+   .+...++|..+.+
T Consensus       265 ~aRG~~vde~aL~~aL~~g~i  285 (365)
T 4hy3_A          265 LSRADVVDFDALMAAVSSGHI  285 (365)
T ss_dssp             CSCGGGSCHHHHHHHHHTTSS
T ss_pred             CcCCchhCHHHHHHHHHcCCc
Confidence            99995   3344556766644

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A

Probab=99.55  E-value=4.2e-14  Score=147.62  Aligned_cols=155  Identities=21%  Similarity=0.324  Sum_probs=111.5

Q ss_pred             ceecccHHhhhcccccceeecCchhhhHHHHhHHHHHHHHH-------HHHHh---------hcCccccCcEEEEEcCCh
Q psy4626          24 GCTHINAQTAAGKLTVPAMNVNDSVTKTKFDNLYMCRESII-------DSLKR---------STDVMFGGKQVVLCGYGE   87 (542)
Q Consensus        24 ~~lh~~~~tA~~~L~~PV~~vn~s~~K~~fd~~~g~~~s~~-------~ai~r---------~~~~~l~GktVvViG~G~   87 (542)
                      |..|++.+.+. ...++|+++.+.......+...+.--+..       +.+++         ..+..+.|++|+|+|+|.
T Consensus        96 G~d~id~~~a~-~~gI~V~n~~g~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~gktvGIIG~G~  174 (351)
T 3jtm_A           96 GSDHIDLQAAA-AAGLTVAEVTGSNVVSVAEDELMRILILMRNFVPGYNQVVKGEWNVAGIAYRAYDLEGKTIGTVGAGR  174 (351)
T ss_dssp             CCTTBCHHHHH-HTTCEEEECTTTTHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCHHHHHTTCCCSTTCEEEEECCSH
T ss_pred             eecccCHHHHH-hcCeeEEECCCcCchHHHHHHHHHHHHHhhCcHHHHHHHHcCCCccccccCCcccccCCEEeEEEeCH
Confidence            56688876654 45678888877543333222222211110       00110         123568999999999999


Q ss_pred             hHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceee-CHHHHhcCCcEEEEcC----CCcccCCHHHHhccCCCeEEEe
Q psy4626          88 VGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVV-KLNEVIRTVDIVVTAT----GNKNVVTREHMDKMKNGCVVCN  162 (542)
Q Consensus        88 IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~-~l~e~l~~aDvVi~at----G~~~lI~~e~l~~mk~Gailvn  162 (542)
                      ||+.+|++|+++|++|+++|+++.....+...|+... +++++++.+|+|+.+.    .+.++++.+.|+.||+|+++||
T Consensus       175 IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN  254 (351)
T 3jtm_A          175 IGKLLLQRLKPFGCNLLYHDRLQMAPELEKETGAKFVEDLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKLKKGVLIVN  254 (351)
T ss_dssp             HHHHHHHHHGGGCCEEEEECSSCCCHHHHHHHCCEECSCHHHHGGGCSEEEECSCCCTTTTTCBSHHHHHHSCTTEEEEE
T ss_pred             HHHHHHHHHHHCCCEEEEeCCCccCHHHHHhCCCeEcCCHHHHHhcCCEEEECCCCCHHHHHhhcHHHHhcCCCCCEEEE
Confidence            9999999999999999999988755555555677655 8999999999999964    4778999999999999999999


Q ss_pred             ccCCC---cccChHhhcCCC
Q psy4626         163 MGHSN---TEIDVNSLRTPD  179 (542)
Q Consensus       163 vG~g~---~eid~~aL~~~~  179 (542)
                      +|||.   .+....+|..+.
T Consensus       255 ~aRG~~vde~aL~~aL~~g~  274 (351)
T 3jtm_A          255 NARGAIMERQAVVDAVESGH  274 (351)
T ss_dssp             CSCGGGBCHHHHHHHHHHTS
T ss_pred             CcCchhhCHHHHHHHHHhCC
Confidence            99995   333345666543

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum}

Probab=99.55  E-value=4.7e-14  Score=145.81  Aligned_cols=154  Identities=14%  Similarity=0.205  Sum_probs=108.1

Q ss_pred             ceecccHHhhhcccccceeecCchhhhHHHHhHHHHHHHHH-------HHHHhh-------cCccccCcEEEEEcCChhH
Q psy4626          24 GCTHINAQTAAGKLTVPAMNVNDSVTKTKFDNLYMCRESII-------DSLKRS-------TDVMFGGKQVVLCGYGEVG   89 (542)
Q Consensus        24 ~~lh~~~~tA~~~L~~PV~~vn~s~~K~~fd~~~g~~~s~~-------~ai~r~-------~~~~l~GktVvViG~G~IG   89 (542)
                      |..|++...+. ...++|+++.+.......+...+.--+..       +...+.       .+..+.|++|+|+|+|.||
T Consensus        71 G~d~id~~~~~-~~gI~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~~~~W~~~~~~~~l~gktvGIiGlG~IG  149 (324)
T 3evt_A           71 GVDYLPLKALQ-AAGVVVANTSGIHADAISESVLAAMLSVVRGYHAAWLNQRGARQWALPMTTSTLTGQQLLIYGTGQIG  149 (324)
T ss_dssp             CCTTSCHHHHH-HTTCEEECCTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTTCCSSCSSCCCCSTTCEEEEECCSHHH
T ss_pred             cccccCHHHHH-HCCcEEEECCCcCchHHHHHHHHHHHHHHhChhHHHHHHHhcCCcccCCCCccccCCeEEEECcCHHH
Confidence            44577766553 45678888887554444333332221111       111111       2457899999999999999


Q ss_pred             HHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCCcEEEEcC----CCcccCCHHHHhccCCCeEEEeccC
Q psy4626          90 KGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTAT----GNKNVVTREHMDKMKNGCVVCNMGH  165 (542)
Q Consensus        90 ~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~aDvVi~at----G~~~lI~~e~l~~mk~GailvnvG~  165 (542)
                      +.+|++|+++|++|+++|+++...... ...+...+++++++++|+|+.+.    .+.++++++.|+.||+|+++||+||
T Consensus       150 ~~vA~~l~~~G~~V~~~dr~~~~~~~~-~~~~~~~~l~ell~~aDvV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aR  228 (324)
T 3evt_A          150 QSLAAKASALGMHVIGVNTTGHPADHF-HETVAFTATADALATANFIVNALPLTPTTHHLFSTELFQQTKQQPMLINIGR  228 (324)
T ss_dssp             HHHHHHHHHTTCEEEEEESSCCCCTTC-SEEEEGGGCHHHHHHCSEEEECCCCCGGGTTCBSHHHHHTCCSCCEEEECSC
T ss_pred             HHHHHHHHhCCCEEEEECCCcchhHhH-hhccccCCHHHHHhhCCEEEEcCCCchHHHHhcCHHHHhcCCCCCEEEEcCC
Confidence            999999999999999999887543221 12233457889999999999964    3678999999999999999999999


Q ss_pred             CC---cccChHhhcCCC
Q psy4626         166 SN---TEIDVNSLRTPD  179 (542)
Q Consensus       166 g~---~eid~~aL~~~~  179 (542)
                      |.   .+...++|..+.
T Consensus       229 G~~vd~~aL~~aL~~g~  245 (324)
T 3evt_A          229 GPAVDTTALMTALDHHQ  245 (324)
T ss_dssp             GGGBCHHHHHHHHHTTS
T ss_pred             ChhhhHHHHHHHHHhCC
Confidence            95   333455676554

>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp}

Probab=99.52  E-value=9.7e-14  Score=143.39  Aligned_cols=153  Identities=16%  Similarity=0.223  Sum_probs=106.7

Q ss_pred             ceecccHHhhhcccccceeecCchhhhHHHHhHHHHHHHHH------H-HHH-----hhcCccccCcEEEEEcCChhHHH
Q psy4626          24 GCTHINAQTAAGKLTVPAMNVNDSVTKTKFDNLYMCRESII------D-SLK-----RSTDVMFGGKQVVLCGYGEVGKG   91 (542)
Q Consensus        24 ~~lh~~~~tA~~~L~~PV~~vn~s~~K~~fd~~~g~~~s~~------~-ai~-----r~~~~~l~GktVvViG~G~IG~~   91 (542)
                      |..|++...+. . .++|+++.+.......+...+.--++.      + .++     +.....+.|++++|+|+|.||+.
T Consensus        77 G~d~id~~~~~-~-gI~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~~l~g~tvGIIGlG~IG~~  154 (324)
T 3hg7_A           77 GVDVLLDARCR-R-DYQLTNVRGIFGPLMSEYVFGHLLSLMRQLPLYREQQKQRLWQSHPYQGLKGRTLLILGTGSIGQH  154 (324)
T ss_dssp             CCGGGSCTTSC-C-SSEEECCCSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCCCCSTTCEEEEECCSHHHHH
T ss_pred             CCCccChHHHh-C-CEEEEECCCcChHHHHHHHHHHHHHHHhChHHHHHHHhhCCCcCCCCcccccceEEEEEECHHHHH
Confidence            44577655443 2 688998887554444333332221111      0 111     11245789999999999999999


Q ss_pred             HHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCCcEEEEcC----CCcccCCHHHHhccCCCeEEEeccCCC
Q psy4626          92 CCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTAT----GNKNVVTREHMDKMKNGCVVCNMGHSN  167 (542)
Q Consensus        92 vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~aDvVi~at----G~~~lI~~e~l~~mk~GailvnvG~g~  167 (542)
                      +|++|+++|++|+++|+++..... ...++...+++++++++|+|+.+.    .+.++++.+.|+.||+|+++||+|||.
T Consensus       155 vA~~l~~~G~~V~~~dr~~~~~~~-~~~~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~gailIN~aRG~  233 (324)
T 3hg7_A          155 IAHTGKHFGMKVLGVSRSGRERAG-FDQVYQLPALNKMLAQADVIVSVLPATRETHHLFTASRFEHCKPGAILFNVGRGN  233 (324)
T ss_dssp             HHHHHHHTTCEEEEECSSCCCCTT-CSEEECGGGHHHHHHTCSEEEECCCCCSSSTTSBCTTTTTCSCTTCEEEECSCGG
T ss_pred             HHHHHHhCCCEEEEEcCChHHhhh-hhcccccCCHHHHHhhCCEEEEeCCCCHHHHHHhHHHHHhcCCCCcEEEECCCch
Confidence            999999999999999988743221 112233467899999999999964    467899988999999999999999995


Q ss_pred             ---cccChHhhcCCC
Q psy4626         168 ---TEIDVNSLRTPD  179 (542)
Q Consensus       168 ---~eid~~aL~~~~  179 (542)
                         .+....+|..+.
T Consensus       234 ~vde~aL~~aL~~g~  248 (324)
T 3hg7_A          234 AINEGDLLTALRTGK  248 (324)
T ss_dssp             GBCHHHHHHHHHTTS
T ss_pred             hhCHHHHHHHHHcCC
Confidence               334456676654

>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum}

Probab=99.50  E-value=1.9e-13  Score=142.77  Aligned_cols=108  Identities=17%  Similarity=0.302  Sum_probs=90.0

Q ss_pred             CccccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceee-CHHHHhcCCcEEEEcC----CCcccC
Q psy4626          72 DVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVV-KLNEVIRTVDIVVTAT----GNKNVV  146 (542)
Q Consensus        72 ~~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~-~l~e~l~~aDvVi~at----G~~~lI  146 (542)
                      +..+.|++|+|+|+|.||+.+|++|+++|++|+++|+++. ...+...|+... +++++++++|+|+.+.    .+.+++
T Consensus       155 ~~~l~g~tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~~~~~g~~~~~~l~ell~~aDiV~l~~Plt~~t~~li  233 (352)
T 3gg9_A          155 GRVLKGQTLGIFGYGKIGQLVAGYGRAFGMNVLVWGRENS-KERARADGFAVAESKDALFEQSDVLSVHLRLNDETRSII  233 (352)
T ss_dssp             BCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSHHH-HHHHHHTTCEECSSHHHHHHHCSEEEECCCCSTTTTTCB
T ss_pred             CccCCCCEEEEEeECHHHHHHHHHHHhCCCEEEEECCCCC-HHHHHhcCceEeCCHHHHHhhCCEEEEeccCcHHHHHhh
Confidence            3568999999999999999999999999999999997753 334556788766 8999999999999964    367899


Q ss_pred             CHHHHhccCCCeEEEeccCCC---cccChHhhcCCCc
Q psy4626         147 TREHMDKMKNGCVVCNMGHSN---TEIDVNSLRTPDL  180 (542)
Q Consensus       147 ~~e~l~~mk~GailvnvG~g~---~eid~~aL~~~~l  180 (542)
                      +.+.|+.||+|+++||+|||.   .+...++|..+.+
T Consensus       234 ~~~~l~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i  270 (352)
T 3gg9_A          234 TVADLTRMKPTALFVNTSRAELVEENGMVTALNRGRP  270 (352)
T ss_dssp             CHHHHTTSCTTCEEEECSCGGGBCTTHHHHHHHHTSS
T ss_pred             CHHHHhhCCCCcEEEECCCchhhcHHHHHHHHHhCCc
Confidence            999999999999999999995   3444566765543

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*

Probab=99.50  E-value=3.9e-13  Score=142.77  Aligned_cols=151  Identities=19%  Similarity=0.281  Sum_probs=105.2

Q ss_pred             ceecccHHhhhcccccceeecCchhhhHHHHhHHHHHH-----------HHHHHHH---hhcCccccCcEEEEEcCChhH
Q psy4626          24 GCTHINAQTAAGKLTVPAMNVNDSVTKTKFDNLYMCRE-----------SIIDSLK---RSTDVMFGGKQVVLCGYGEVG   89 (542)
Q Consensus        24 ~~lh~~~~tA~~~L~~PV~~vn~s~~K~~fd~~~g~~~-----------s~~~ai~---r~~~~~l~GktVvViG~G~IG   89 (542)
                      |..|++.+.|. ...++|+++.++.+....+...+.--           .+-.+-+   ...+..+.|++++|+|+|.||
T Consensus        79 G~d~iD~~~a~-~~GI~V~n~p~~n~~~vAE~~~~~~L~~~R~i~~~~~~~~~g~W~~~~~~~~el~gktlGiIGlG~IG  157 (404)
T 1sc6_A           79 GTNQVDLDAAA-KRGIPVFNAPFSNTRSVAELVIGELLLLLRGVPEANAKAHRGVGNKLAAGSFEARGKKLGIIGYGHIG  157 (404)
T ss_dssp             CCTTBCHHHHH-HTTCCEECCTTTTHHHHHHHHHHHHHHHHHTHHHHHHHHHHTCCC-----CCCSTTCEEEEECCSHHH
T ss_pred             ccCccCHHHHH-hCCCEEEecCcccHHHHHHHHHHHHHHHHhChHHHHHHHHcCCccccCCCccccCCCEEEEEeECHHH
Confidence            55577776554 56678888877544333222221111           1111111   012457899999999999999


Q ss_pred             HHHHHHHHhCCCEEEEEeCCchhhhhhhcCCcee-eCHHHHhcCCcEEEEcC----CCcccCCHHHHhccCCCeEEEecc
Q psy4626          90 KGCCQSLKGLGCVIYITEIDPICALQACMDGFSV-VKLNEVIRTVDIVVTAT----GNKNVVTREHMDKMKNGCVVCNMG  164 (542)
Q Consensus        90 ~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v-~~l~e~l~~aDvVi~at----G~~~lI~~e~l~~mk~GailvnvG  164 (542)
                      +.+|++|+++|++|++||+++...    ..++.. .+++++++.||+|+.+.    .++++++++.|+.||+|++++|+|
T Consensus       158 ~~vA~~l~~~G~~V~~~d~~~~~~----~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~ga~lIN~a  233 (404)
T 1sc6_A          158 TQLGILAESLGMYVYFYDIENKLP----LGNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINAS  233 (404)
T ss_dssp             HHHHHHHHHTTCEEEEECSSCCCC----CTTCEECSCHHHHHHHCSEEEECCCSSTTTTTCBCHHHHHHSCTTEEEEECS
T ss_pred             HHHHHHHHHCCCEEEEEcCCchhc----cCCceecCCHHHHHhcCCEEEEccCCChHHHHHhhHHHHhhcCCCeEEEECC
Confidence            999999999999999999766421    123443 48999999999999964    477899988999999999999999


Q ss_pred             CCCc---ccChHhhcCCC
Q psy4626         165 HSNT---EIDVNSLRTPD  179 (542)
Q Consensus       165 ~g~~---eid~~aL~~~~  179 (542)
                      |+..   +...++|..+.
T Consensus       234 Rg~~vd~~aL~~aL~~g~  251 (404)
T 1sc6_A          234 RGTVVDIPALADALASKH  251 (404)
T ss_dssp             CSSSBCHHHHHHHHHTTS
T ss_pred             CChHHhHHHHHHHHHcCC
Confidence            9962   23345666553

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens}

Probab=99.49  E-value=2.7e-13  Score=140.76  Aligned_cols=153  Identities=14%  Similarity=0.202  Sum_probs=109.1

Q ss_pred             ceecccHHhhhcccccceeecCchhhhHHHHhHHHHHHHHH-------HHHHh-------hcCccccCcEEEEEcCChhH
Q psy4626          24 GCTHINAQTAAGKLTVPAMNVNDSVTKTKFDNLYMCRESII-------DSLKR-------STDVMFGGKQVVLCGYGEVG   89 (542)
Q Consensus        24 ~~lh~~~~tA~~~L~~PV~~vn~s~~K~~fd~~~g~~~s~~-------~ai~r-------~~~~~l~GktVvViG~G~IG   89 (542)
                      |..|++.+.+. ...++|+++.+.......+...+.--++.       ..+++       ..+..+.|++|+|+|+|.||
T Consensus        99 G~d~id~~~~~-~~gI~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~l~g~tvgIIGlG~IG  177 (335)
T 2g76_A           99 GVDNVDLEAAT-RKGILVMNTPNGNSLSAAELTCGMIMCLARQIPQATASMKDGKWERKKFMGTELNGKTLGILGLGRIG  177 (335)
T ss_dssp             SCTTBCHHHHH-HHTCEEECCSSTTHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCTGGGCBCCCTTCEEEEECCSHHH
T ss_pred             CcchhChHHHH-hCCeEEEECCCccchHHHHHHHHHHHHHHhchHHHHHHHHcCCCCccCCCCcCCCcCEEEEEeECHHH
Confidence            55677766554 45678888776544433332222211110       01110       12356899999999999999


Q ss_pred             HHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCCcEEEEcC----CCcccCCHHHHhccCCCeEEEeccC
Q psy4626          90 KGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTAT----GNKNVVTREHMDKMKNGCVVCNMGH  165 (542)
Q Consensus        90 ~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~aDvVi~at----G~~~lI~~e~l~~mk~GailvnvG~  165 (542)
                      +.+|++|+++|++|+++|+++.+. .+...|+...+++++++++|+|+.+.    .+.++++++.|+.||+|++++|+||
T Consensus       178 ~~vA~~l~~~G~~V~~~d~~~~~~-~~~~~g~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~ar  256 (335)
T 2g76_A          178 REVATRMQSFGMKTIGYDPIISPE-VSASFGVQQLPLEEIWPLCDFITVHTPLLPSTTGLLNDNTFAQCKKGVRVVNCAR  256 (335)
T ss_dssp             HHHHHHHHTTTCEEEEECSSSCHH-HHHHTTCEECCHHHHGGGCSEEEECCCCCTTTTTSBCHHHHTTSCTTEEEEECSC
T ss_pred             HHHHHHHHHCCCEEEEECCCcchh-hhhhcCceeCCHHHHHhcCCEEEEecCCCHHHHHhhCHHHHhhCCCCcEEEECCC
Confidence            999999999999999999877653 45567777778999999999999964    3678898889999999999999999


Q ss_pred             CCc---ccChHhhcCC
Q psy4626         166 SNT---EIDVNSLRTP  178 (542)
Q Consensus       166 g~~---eid~~aL~~~  178 (542)
                      +..   +....+|..+
T Consensus       257 g~vvd~~aL~~aL~~g  272 (335)
T 2g76_A          257 GGIVDEGALLRALQSG  272 (335)
T ss_dssp             TTSBCHHHHHHHHHHT
T ss_pred             ccccCHHHHHHHHHhC
Confidence            862   2224456544

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}

Probab=99.49  E-value=4e-13  Score=142.88  Aligned_cols=152  Identities=20%  Similarity=0.278  Sum_probs=106.1

Q ss_pred             eceecccHHhhhcccccceeecCchhhhHHHHhHHHHHHHHH-------HHHHh-------hcCccccCcEEEEEcCChh
Q psy4626          23 VGCTHINAQTAAGKLTVPAMNVNDSVTKTKFDNLYMCRESII-------DSLKR-------STDVMFGGKQVVLCGYGEV   88 (542)
Q Consensus        23 ~~~lh~~~~tA~~~L~~PV~~vn~s~~K~~fd~~~g~~~s~~-------~ai~r-------~~~~~l~GktVvViG~G~I   88 (542)
                      +|..|++.+.+. ...++|+++..+......+...+.--+..       ..+++       ..+..+.|++++|+|+|.|
T Consensus        89 ~G~d~IDl~~a~-~~GI~V~n~p~~n~~aVAE~~l~l~L~l~R~i~~~~~~~~~g~W~~~~~~~~el~gktvGIIGlG~I  167 (416)
T 3k5p_A           89 VGTNQVELKAAR-KRGIPVFNAPFSNTRSVAELVIGEIIMLMRRIFPRSVSAHAGGWEKTAIGSREVRGKTLGIVGYGNI  167 (416)
T ss_dssp             SCCTTBCHHHHH-HTTCCEECCSSTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCTTCCCSTTCEEEEECCSHH
T ss_pred             cccCccCHHHHH-hcCcEEEeCCCcccHHHHHHHHHHHHHHhcccHHHHHhhhcccccccCCCCccCCCCEEEEEeeCHH
Confidence            356688776554 56788998887654443333222211110       01111       1135789999999999999


Q ss_pred             HHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCc-eeeCHHHHhcCCcEEEEcC----CCcccCCHHHHhccCCCeEEEec
Q psy4626          89 GKGCCQSLKGLGCVIYITEIDPICALQACMDGF-SVVKLNEVIRTVDIVVTAT----GNKNVVTREHMDKMKNGCVVCNM  163 (542)
Q Consensus        89 G~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~-~v~~l~e~l~~aDvVi~at----G~~~lI~~e~l~~mk~Gailvnv  163 (542)
                      |+.+|+.++++|++|++||+++...    ..+. .+.+++++++.||+|+.+.    .++++++++.|+.||+|++++|+
T Consensus       168 G~~vA~~l~~~G~~V~~yd~~~~~~----~~~~~~~~sl~ell~~aDvV~lhvPlt~~T~~li~~~~l~~mk~gailIN~  243 (416)
T 3k5p_A          168 GSQVGNLAESLGMTVRYYDTSDKLQ----YGNVKPAASLDELLKTSDVVSLHVPSSKSTSKLITEAKLRKMKKGAFLINN  243 (416)
T ss_dssp             HHHHHHHHHHTTCEEEEECTTCCCC----BTTBEECSSHHHHHHHCSEEEECCCC-----CCBCHHHHHHSCTTEEEEEC
T ss_pred             HHHHHHHHHHCCCEEEEECCcchhc----ccCcEecCCHHHHHhhCCEEEEeCCCCHHHhhhcCHHHHhhCCCCcEEEEC
Confidence            9999999999999999999775322    1222 3568999999999999965    36789999999999999999999


Q ss_pred             cCCC---cccChHhhcCCC
Q psy4626         164 GHSN---TEIDVNSLRTPD  179 (542)
Q Consensus       164 G~g~---~eid~~aL~~~~  179 (542)
                      |||.   .+...++|..+.
T Consensus       244 aRG~vvd~~aL~~aL~~g~  262 (416)
T 3k5p_A          244 ARGSDVDLEALAKVLQEGH  262 (416)
T ss_dssp             SCTTSBCHHHHHHHHHTTS
T ss_pred             CCChhhhHHHHHHHHHcCC
Confidence            9996   333455666654

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}

Probab=99.48  E-value=3.7e-13  Score=138.01  Aligned_cols=153  Identities=16%  Similarity=0.253  Sum_probs=109.1

Q ss_pred             ceecccHHhhhcccccceeecCchhhhHHHHhHHHHHHHHH-------HHHH----h---hcCccccCcEEEEEcCChhH
Q psy4626          24 GCTHINAQTAAGKLTVPAMNVNDSVTKTKFDNLYMCRESII-------DSLK----R---STDVMFGGKQVVLCGYGEVG   89 (542)
Q Consensus        24 ~~lh~~~~tA~~~L~~PV~~vn~s~~K~~fd~~~g~~~s~~-------~ai~----r---~~~~~l~GktVvViG~G~IG   89 (542)
                      |..|++.+.+. ...++|+++.+.......+...+.--+..       ..++    .   ..+..+.|++|+|+|+|.||
T Consensus        76 G~d~id~~~~~-~~gi~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~~~~~~l~g~~vgIiG~G~IG  154 (307)
T 1wwk_A           76 GLDNIDVEAAK-EKGIEVVNAPAASSRSVAELAVGLMFSVARKIAFADRKMREGVWAKKEAMGIELEGKTIGIIGFGRIG  154 (307)
T ss_dssp             CCTTBCHHHHH-HHTCEEECCGGGGHHHHHHHHHHHHHHHHTTHHHHHHHHTTTCCCTTTCCBCCCTTCEEEEECCSHHH
T ss_pred             cccccCHHHHH-hCCcEEEECCCCChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCccCcCCcccCCceEEEEccCHHH
Confidence            45577765543 34578888777544443333322221111       0111    0   12346899999999999999


Q ss_pred             HHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCCcEEEEcCC----CcccCCHHHHhccCCCeEEEeccC
Q psy4626          90 KGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATG----NKNVVTREHMDKMKNGCVVCNMGH  165 (542)
Q Consensus        90 ~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~aDvVi~atG----~~~lI~~e~l~~mk~GailvnvG~  165 (542)
                      +.+|+.++++|++|+++|+++.+ ..+...|+...+++++++++|+|+.+..    +.++++.+.|+.||+|++++|+||
T Consensus       155 ~~~A~~l~~~G~~V~~~d~~~~~-~~~~~~g~~~~~l~ell~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lin~ar  233 (307)
T 1wwk_A          155 YQVAKIANALGMNILLYDPYPNE-ERAKEVNGKFVDLETLLKESDVVTIHVPLVESTYHLINEERLKLMKKTAILINTSR  233 (307)
T ss_dssp             HHHHHHHHHTTCEEEEECSSCCH-HHHHHTTCEECCHHHHHHHCSEEEECCCCSTTTTTCBCHHHHHHSCTTCEEEECSC
T ss_pred             HHHHHHHHHCCCEEEEECCCCCh-hhHhhcCccccCHHHHHhhCCEEEEecCCChHHhhhcCHHHHhcCCCCeEEEECCC
Confidence            99999999999999999998866 3455678777789999999999999753    678898889999999999999999


Q ss_pred             CCc---ccChHhhcCC
Q psy4626         166 SNT---EIDVNSLRTP  178 (542)
Q Consensus       166 g~~---eid~~aL~~~  178 (542)
                      +..   +....+|..+
T Consensus       234 g~~vd~~aL~~aL~~g  249 (307)
T 1wwk_A          234 GPVVDTNALVKALKEG  249 (307)
T ss_dssp             GGGBCHHHHHHHHHHT
T ss_pred             CcccCHHHHHHHHHhC
Confidence            852   2224455544

>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A

Probab=99.47  E-value=7.5e-13  Score=140.06  Aligned_cols=155  Identities=13%  Similarity=0.141  Sum_probs=109.7

Q ss_pred             ceecccHHhhhcccccceeecCchhhhHHHHhHHHHHH---------------HHHHHHH-hhcCccccCcEEEEEcCCh
Q psy4626          24 GCTHINAQTAAGKLTVPAMNVNDSVTKTKFDNLYMCRE---------------SIIDSLK-RSTDVMFGGKQVVLCGYGE   87 (542)
Q Consensus        24 ~~lh~~~~tA~~~L~~PV~~vn~s~~K~~fd~~~g~~~---------------s~~~ai~-r~~~~~l~GktVvViG~G~   87 (542)
                      |..|++.+.+. ...++|.++.+.......+...+.--               .-|+.-. ...+..+.|++++|+|+|.
T Consensus       123 G~d~iD~~aa~-~~gI~V~n~~g~~~~~VAE~al~liL~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~gktvGIIGlG~  201 (393)
T 2nac_A          123 GSDHVDLQSAI-DRNVTVAEVTYCNSISVAEHVVMMILSLVRNYLPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGR  201 (393)
T ss_dssp             CCTTBCHHHHH-HTTCEEEECTTTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHTTCCCCTTCEEEEECCSH
T ss_pred             cccccCHHHHh-cCCEEEEeCCCcccHHHHHHHHHHHHHHHhccHHHHHHHHcCCCCccccccCCccCCCCEEEEEeECH
Confidence            56688876654 45678888776543332222221111               1121000 0113468999999999999


Q ss_pred             hHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCcee-eCHHHHhcCCcEEEEcC----CCcccCCHHHHhccCCCeEEEe
Q psy4626          88 VGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV-VKLNEVIRTVDIVVTAT----GNKNVVTREHMDKMKNGCVVCN  162 (542)
Q Consensus        88 IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v-~~l~e~l~~aDvVi~at----G~~~lI~~e~l~~mk~Gailvn  162 (542)
                      ||+.+|+.|+++|++|+++|+++.....+...|+.. .+++++++.+|+|+.+.    .+.++++++.|+.||+|+++||
T Consensus       202 IG~~vA~~l~a~G~~V~~~d~~~~~~~~~~~~G~~~~~~l~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN  281 (393)
T 2nac_A          202 IGLAVLRRLAPFDVHLHYTDRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVN  281 (393)
T ss_dssp             HHHHHHHHHGGGTCEEEEECSSCCCHHHHHHHTCEECSSHHHHGGGCSEEEECSCCCTTTTTCBSHHHHTTSCTTEEEEE
T ss_pred             HHHHHHHHHHhCCCEEEEEcCCccchhhHhhcCceecCCHHHHHhcCCEEEEecCCchHHHHHhhHHHHhhCCCCCEEEE
Confidence            999999999999999999998875544455567665 57899999999999964    4678999889999999999999


Q ss_pred             ccCCCc---ccChHhhcCCC
Q psy4626         163 MGHSNT---EIDVNSLRTPD  179 (542)
Q Consensus       163 vG~g~~---eid~~aL~~~~  179 (542)
                      +||+..   +...++|..+.
T Consensus       282 ~aRG~~vde~aL~~aL~~g~  301 (393)
T 2nac_A          282 TARGKLCDRDAVARALESGR  301 (393)
T ss_dssp             CSCGGGBCHHHHHHHHHTTS
T ss_pred             CCCchHhhHHHHHHHHHcCC
Confidence            999952   23345666553

>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp}

Probab=99.46  E-value=2.7e-13  Score=142.70  Aligned_cols=147  Identities=14%  Similarity=0.194  Sum_probs=105.8

Q ss_pred             ceecccHHhhhcccccceeecCchhhhHHHHhHHHHHHHHHHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCCCEE
Q psy4626          24 GCTHINAQTAAGKLTVPAMNVNDSVTKTKFDNLYMCRESIIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVI  103 (542)
Q Consensus        24 ~~lh~~~~tA~~~L~~PV~~vn~s~~K~~fd~~~g~~~s~~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga~V  103 (542)
                      |..|++...+. ...++|+++.+.......+...+.--    ++.|..+..+.|++|+|+|+|.||+.+|++|+++|++|
T Consensus        71 G~D~iD~~~~~-~~gI~v~n~pg~~~~~VAE~~l~~lL----~l~r~~g~~l~gktvGIIGlG~IG~~vA~~l~a~G~~V  145 (381)
T 3oet_A           71 GTDHVDEAWLK-QAGIGFSAAPGCNAIAVVEYVFSALL----MLAERDGFSLRDRTIGIVGVGNVGSRLQTRLEALGIRT  145 (381)
T ss_dssp             CCTTBCHHHHH-HTTCEEECCTTTTHHHHHHHHHHHHH----HHHHHTTCCGGGCEEEEECCSHHHHHHHHHHHHTTCEE
T ss_pred             cccccCHHHHH-hCCEEEEECCCcCcchhHHHHHHHHH----HHHHhcCCccCCCEEEEEeECHHHHHHHHHHHHCCCEE
Confidence            44566655443 34566777666544444333322211    22233456899999999999999999999999999999


Q ss_pred             EEEeCCchhhhhhhcCCceeeCHHHHhcCCcEEEEcCC--------CcccCCHHHHhccCCCeEEEeccCCC---cccCh
Q psy4626         104 YITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATG--------NKNVVTREHMDKMKNGCVVCNMGHSN---TEIDV  172 (542)
Q Consensus       104 iv~d~dp~r~~~A~~~G~~v~~l~e~l~~aDvVi~atG--------~~~lI~~e~l~~mk~GailvnvG~g~---~eid~  172 (542)
                      +++|+.+  ..  ...+....++++++++||+|+.++.        +.++++.+.|+.||+|+++||+|||.   .+...
T Consensus       146 ~~~d~~~--~~--~~~~~~~~sl~ell~~aDiV~l~~Plt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~vvde~aL~  221 (381)
T 3oet_A          146 LLCDPPR--AA--RGDEGDFRTLDELVQEADVLTFHTPLYKDGPYKTLHLADETLIRRLKPGAILINACRGPVVDNAALL  221 (381)
T ss_dssp             EEECHHH--HH--TTCCSCBCCHHHHHHHCSEEEECCCCCCSSTTCCTTSBCHHHHHHSCTTEEEEECSCGGGBCHHHHH
T ss_pred             EEECCCh--HH--hccCcccCCHHHHHhhCCEEEEcCcCCccccccchhhcCHHHHhcCCCCcEEEECCCCcccCHHHHH
Confidence            9998532  21  1245567789999999999999752        78899999999999999999999996   33345


Q ss_pred             HhhcCCC
Q psy4626         173 NSLRTPD  179 (542)
Q Consensus       173 ~aL~~~~  179 (542)
                      .+|..+.
T Consensus       222 ~aL~~g~  228 (381)
T 3oet_A          222 ARLNAGQ  228 (381)
T ss_dssp             HHHHTTC
T ss_pred             HHHHhCC
Confidence            5666553

>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti}

Probab=99.46  E-value=9.6e-13  Score=136.81  Aligned_cols=149  Identities=11%  Similarity=0.177  Sum_probs=95.8

Q ss_pred             ceecccHHhhhcccccceeecCchhhhHHHHhHHHHHHH---------------HHHHH-HhhcCccccCcEEEEEcCCh
Q psy4626          24 GCTHINAQTAAGKLTVPAMNVNDSVTKTKFDNLYMCRES---------------IIDSL-KRSTDVMFGGKQVVLCGYGE   87 (542)
Q Consensus        24 ~~lh~~~~tA~~~L~~PV~~vn~s~~K~~fd~~~g~~~s---------------~~~ai-~r~~~~~l~GktVvViG~G~   87 (542)
                      |..|++.+.+. ...++|+++.+.......+...+.--+               -|..- ....+..+.|++++|+|+|.
T Consensus       103 G~d~id~~~a~-~~gI~V~n~pg~~~~~vAE~a~~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~gktiGIIGlG~  181 (340)
T 4dgs_A          103 GTDKVDLARAR-RRNIDVTTTPGVLADDVADLGIALMLAVLRRVGDGDRLVREGRWAAGEQLPLGHSPKGKRIGVLGLGQ  181 (340)
T ss_dssp             CCTTBCHHHHH-HTTCEEECCCSSSHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCC------CCCCCCTTCEEEEECCSH
T ss_pred             CccccCHHHHH-hCCEEEEECCCCCcchHHHHHHHHHHHHHhChHHHHHHHhcCCcccccCcCccccccCCEEEEECCCH
Confidence            55677776554 456788888875544433332222111               12110 00113578999999999999


Q ss_pred             hHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce-eeCHHHHhcCCcEEEEcCC----CcccCCHHHHhccCCCeEEEe
Q psy4626          88 VGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVKLNEVIRTVDIVVTATG----NKNVVTREHMDKMKNGCVVCN  162 (542)
Q Consensus        88 IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~-v~~l~e~l~~aDvVi~atG----~~~lI~~e~l~~mk~Gailvn  162 (542)
                      ||+.+|+.++++|++|+++|+++.+.     .++. ..+++++++++|+|+.+..    +.++++++.|+.||+|++++|
T Consensus       182 IG~~vA~~l~~~G~~V~~~dr~~~~~-----~~~~~~~sl~ell~~aDvVil~vP~t~~t~~li~~~~l~~mk~gailIN  256 (340)
T 4dgs_A          182 IGRALASRAEAFGMSVRYWNRSTLSG-----VDWIAHQSPVDLARDSDVLAVCVAASAATQNIVDASLLQALGPEGIVVN  256 (340)
T ss_dssp             HHHHHHHHHHTTTCEEEEECSSCCTT-----SCCEECSSHHHHHHTCSEEEECC----------CHHHHHHTTTTCEEEE
T ss_pred             HHHHHHHHHHHCCCEEEEEcCCcccc-----cCceecCCHHHHHhcCCEEEEeCCCCHHHHHHhhHHHHhcCCCCCEEEE
Confidence            99999999999999999999877542     2333 4588999999999999753    678999899999999999999


Q ss_pred             ccCCC---cccChHhhcCC
Q psy4626         163 MGHSN---TEIDVNSLRTP  178 (542)
Q Consensus       163 vG~g~---~eid~~aL~~~  178 (542)
                      +|||.   .+...++|..+
T Consensus       257 ~aRG~vvde~aL~~aL~~g  275 (340)
T 4dgs_A          257 VARGNVVDEDALIEALKSG  275 (340)
T ss_dssp             CSCC--------------C
T ss_pred             CCCCcccCHHHHHHHHHcC
Confidence            99995   33334566554

>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A

Probab=99.46  E-value=4.1e-13  Score=140.78  Aligned_cols=156  Identities=17%  Similarity=0.211  Sum_probs=109.5

Q ss_pred             ceecccHHhhhcc-cccceeecCchhhhHHHHhHHHHHHH---------------HHHHH-HhhcCccccCcEEEEEcCC
Q psy4626          24 GCTHINAQTAAGK-LTVPAMNVNDSVTKTKFDNLYMCRES---------------IIDSL-KRSTDVMFGGKQVVLCGYG   86 (542)
Q Consensus        24 ~~lh~~~~tA~~~-L~~PV~~vn~s~~K~~fd~~~g~~~s---------------~~~ai-~r~~~~~l~GktVvViG~G   86 (542)
                      |..|++...+... -.++|+++.+.......+...+.--+               .|..- ....+..+.|++|+|+|+|
T Consensus        94 G~d~id~~~~~~~~~gI~V~n~pg~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~g~tvgIIG~G  173 (364)
T 2j6i_A           94 GSDHIDLDYINQTGKKISVLEVTGSNVVSVAEHVVMTMLVLVRNFVPAHEQIINHDWEVAAIAKDAYDIEGKTIATIGAG  173 (364)
T ss_dssp             CCTTBCHHHHHHHTCCCEEEECTTSSHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHTTCCCSTTCEEEEECCS
T ss_pred             ccccccHHHHHhcCCCEEEEECCCcCcHHHHHHHHHHHHHHHhChHHHHHHHHhCCCCcCcccCCcccCCCCEEEEECcC
Confidence            5568887665422 16788888775433333222222111               12100 0012357899999999999


Q ss_pred             hhHHHHHHHHHhCCCE-EEEEeCCchhhhhhhcCCceee-CHHHHhcCCcEEEEcCC----CcccCCHHHHhccCCCeEE
Q psy4626          87 EVGKGCCQSLKGLGCV-IYITEIDPICALQACMDGFSVV-KLNEVIRTVDIVVTATG----NKNVVTREHMDKMKNGCVV  160 (542)
Q Consensus        87 ~IG~~vA~~l~~~Ga~-Viv~d~dp~r~~~A~~~G~~v~-~l~e~l~~aDvVi~atG----~~~lI~~e~l~~mk~Gail  160 (542)
                      .||+.+|+.|+++|++ |+++|+++.....+...|+... +++++++.+|+|+.+..    +.++++.+.|+.||+|+++
T Consensus       174 ~IG~~vA~~l~~~G~~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~ga~l  253 (364)
T 2j6i_A          174 RIGYRVLERLVPFNPKELLYYDYQALPKDAEEKVGARRVENIEELVAQADIVTVNAPLHAGTKGLINKELLSKFKKGAWL  253 (364)
T ss_dssp             HHHHHHHHHHGGGCCSEEEEECSSCCCHHHHHHTTEEECSSHHHHHHTCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEE
T ss_pred             HHHHHHHHHHHhCCCcEEEEECCCccchhHHHhcCcEecCCHHHHHhcCCEEEECCCCChHHHHHhCHHHHhhCCCCCEE
Confidence            9999999999999996 9999988755554556677654 78999999999999753    5689998899999999999


Q ss_pred             EeccCCC---cccChHhhcCCC
Q psy4626         161 CNMGHSN---TEIDVNSLRTPD  179 (542)
Q Consensus       161 vnvG~g~---~eid~~aL~~~~  179 (542)
                      +|+||+.   .+...++|..+.
T Consensus       254 In~arG~~vd~~aL~~aL~~g~  275 (364)
T 2j6i_A          254 VNTARGAICVAEDVAAALESGQ  275 (364)
T ss_dssp             EECSCGGGBCHHHHHHHHHHTS
T ss_pred             EECCCCchhCHHHHHHHHHcCC
Confidence            9999995   233345665543

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}

Probab=99.46  E-value=8.1e-13  Score=135.79  Aligned_cols=154  Identities=15%  Similarity=0.240  Sum_probs=110.0

Q ss_pred             ceecccHHhhhcccccceeecCchhhhHHHHhHHHHHHHHH------H-HHH-----hhcCccccCcEEEEEcCChhHHH
Q psy4626          24 GCTHINAQTAAGKLTVPAMNVNDSVTKTKFDNLYMCRESII------D-SLK-----RSTDVMFGGKQVVLCGYGEVGKG   91 (542)
Q Consensus        24 ~~lh~~~~tA~~~L~~PV~~vn~s~~K~~fd~~~g~~~s~~------~-ai~-----r~~~~~l~GktVvViG~G~IG~~   91 (542)
                      |..|++.+.+. ...++|+++.+.......+...+.--+..      + .++     ...+..+.|++|+|+|+|.||+.
T Consensus        78 G~d~id~~~~~-~~gi~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~~~~l~g~~vgIIG~G~IG~~  156 (313)
T 2ekl_A           78 GLDNIDTEEAE-KRNIKVVYAPGASTDSAVELTIGLMIAAARKMYTSMALAKSGIFKKIEGLELAGKTIGIVGFGRIGTK  156 (313)
T ss_dssp             CCTTBCHHHHH-HTTCEEECCTTTTHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCCCCCCCCTTCEEEEESCSHHHHH
T ss_pred             CCCccCHHHHH-hCCeEEEeCCCCCchHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCCCCCCCCCCCEEEEEeeCHHHHH
Confidence            55577765543 45678888877544433332222211111      0 111     11235789999999999999999


Q ss_pred             HHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCCcEEEEcCC----CcccCCHHHHhccCCCeEEEeccCCC
Q psy4626          92 CCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATG----NKNVVTREHMDKMKNGCVVCNMGHSN  167 (542)
Q Consensus        92 vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~aDvVi~atG----~~~lI~~e~l~~mk~GailvnvG~g~  167 (542)
                      +|+.++++|++|+++|+++.+. .+...|+...+++++++.+|+|+.+..    +.++++.+.++.||+|++++|+||++
T Consensus       157 ~A~~l~~~G~~V~~~d~~~~~~-~~~~~g~~~~~l~ell~~aDvVvl~~P~~~~t~~li~~~~l~~mk~ga~lIn~arg~  235 (313)
T 2ekl_A          157 VGIIANAMGMKVLAYDILDIRE-KAEKINAKAVSLEELLKNSDVISLHVTVSKDAKPIIDYPQFELMKDNVIIVNTSRAV  235 (313)
T ss_dssp             HHHHHHHTTCEEEEECSSCCHH-HHHHTTCEECCHHHHHHHCSEEEECCCCCTTSCCSBCHHHHHHSCTTEEEEESSCGG
T ss_pred             HHHHHHHCCCEEEEECCCcchh-HHHhcCceecCHHHHHhhCCEEEEeccCChHHHHhhCHHHHhcCCCCCEEEECCCCc
Confidence            9999999999999999988664 355677777789999999999999753    67889888999999999999999985


Q ss_pred             c---ccChHhhcCCC
Q psy4626         168 T---EIDVNSLRTPD  179 (542)
Q Consensus       168 ~---eid~~aL~~~~  179 (542)
                      .   +....+|..+.
T Consensus       236 ~vd~~aL~~aL~~g~  250 (313)
T 2ekl_A          236 AVNGKALLDYIKKGK  250 (313)
T ss_dssp             GBCHHHHHHHHHTTC
T ss_pred             ccCHHHHHHHHHcCC
Confidence            2   22244565543

>2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A*

Probab=99.44  E-value=4.6e-13  Score=139.40  Aligned_cols=104  Identities=16%  Similarity=0.259  Sum_probs=86.7

Q ss_pred             CccccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCCcEEEEcC----CCcccCC
Q psy4626          72 DVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTAT----GNKNVVT  147 (542)
Q Consensus        72 ~~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~aDvVi~at----G~~~lI~  147 (542)
                      +..+.|++|+|+|+|.||+.+|++|+++|++|+++|+++...   ...+....+++++++++|+|+.+.    .+.++++
T Consensus       143 ~~~l~gktvgIiGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~---~~~~~~~~~l~ell~~aDvV~l~~Plt~~t~~li~  219 (343)
T 2yq5_A          143 SNEIYNLTVGLIGVGHIGSAVAEIFSAMGAKVIAYDVAYNPE---FEPFLTYTDFDTVLKEADIVSLHTPLFPSTENMIG  219 (343)
T ss_dssp             BCCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCGG---GTTTCEECCHHHHHHHCSEEEECCCCCTTTTTCBC
T ss_pred             ccccCCCeEEEEecCHHHHHHHHHHhhCCCEEEEECCChhhh---hhccccccCHHHHHhcCCEEEEcCCCCHHHHHHhh
Confidence            356889999999999999999999999999999999887542   233456679999999999999965    4788999


Q ss_pred             HHHHhccCCCeEEEeccCCC---cccChHhhcCC
Q psy4626         148 REHMDKMKNGCVVCNMGHSN---TEIDVNSLRTP  178 (542)
Q Consensus       148 ~e~l~~mk~GailvnvG~g~---~eid~~aL~~~  178 (542)
                      .+.|+.||+|+++||+|||.   .+...++|..+
T Consensus       220 ~~~l~~mk~gailIN~aRg~~vd~~aL~~aL~~g  253 (343)
T 2yq5_A          220 EKQLKEMKKSAYLINCARGELVDTGALIKALQDG  253 (343)
T ss_dssp             HHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHT
T ss_pred             HHHHhhCCCCcEEEECCCChhhhHHHHHHHHHcC
Confidence            99999999999999999995   33334566544

>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa}

Probab=99.43  E-value=1.4e-12  Score=137.49  Aligned_cols=147  Identities=14%  Similarity=0.223  Sum_probs=104.2

Q ss_pred             ceecccHHhhhcccccceeecCchhhhHHHHhHHHHHHHHHHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCCCEE
Q psy4626          24 GCTHINAQTAAGKLTVPAMNVNDSVTKTKFDNLYMCRESIIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVI  103 (542)
Q Consensus        24 ~~lh~~~~tA~~~L~~PV~~vn~s~~K~~fd~~~g~~~s~~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga~V  103 (542)
                      |..|++...+. ...++|+++.+.......+...+.-.+    +.|..+..+.|++|+|+|+|.||+.+|++|+++|++|
T Consensus        68 G~D~iD~~~~~-~~gI~v~n~pg~~~~~vAE~~l~~lL~----l~r~~~~~l~g~tvGIIGlG~IG~~vA~~l~~~G~~V  142 (380)
T 2o4c_A           68 GTDHLDLDYFA-EAGIAWSSAPGCNARGVVDYVLGCLLA----MAEVRGADLAERTYGVVGAGQVGGRLVEVLRGLGWKV  142 (380)
T ss_dssp             CSTTBCHHHHH-HHTCEEECCTTTTHHHHHHHHHHHHHH----HHHHHTCCGGGCEEEEECCSHHHHHHHHHHHHTTCEE
T ss_pred             ccchhhHHHHH-hCCCEEEeCCCcChHHHHHHHHHHHHH----HHhhhhcccCCCEEEEEeCCHHHHHHHHHHHHCCCEE
Confidence            34466655443 345677777665444443333222211    2222346789999999999999999999999999999


Q ss_pred             EEEeCCchhhhhhhcCCceeeCHHHHhcCCcEEEEcCC--------CcccCCHHHHhccCCCeEEEeccCCC---cccCh
Q psy4626         104 YITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATG--------NKNVVTREHMDKMKNGCVVCNMGHSN---TEIDV  172 (542)
Q Consensus       104 iv~d~dp~r~~~A~~~G~~v~~l~e~l~~aDvVi~atG--------~~~lI~~e~l~~mk~GailvnvG~g~---~eid~  172 (542)
                      +++|+++...    ..|....+++++++++|+|+.++.        +.++++++.|+.||+|++++|+||+.   .+...
T Consensus       143 ~~~d~~~~~~----~~g~~~~~l~ell~~aDvV~l~~Plt~~g~~~T~~li~~~~l~~mk~gailIN~sRG~vvd~~aL~  218 (380)
T 2o4c_A          143 LVCDPPRQAR----EPDGEFVSLERLLAEADVISLHTPLNRDGEHPTRHLLDEPRLAALRPGTWLVNASRGAVVDNQALR  218 (380)
T ss_dssp             EEECHHHHHH----STTSCCCCHHHHHHHCSEEEECCCCCSSSSSCCTTSBCHHHHHTSCTTEEEEECSCGGGBCHHHHH
T ss_pred             EEEcCChhhh----ccCcccCCHHHHHHhCCEEEEeccCccccccchhhhcCHHHHhhCCCCcEEEECCCCcccCHHHHH
Confidence            9998544321    245556789999999999999752        77899988999999999999999995   23334


Q ss_pred             HhhcCCC
Q psy4626         173 NSLRTPD  179 (542)
Q Consensus       173 ~aL~~~~  179 (542)
                      .+|..+.
T Consensus       219 ~aL~~g~  225 (380)
T 2o4c_A          219 RLLEGGA  225 (380)
T ss_dssp             HHHHTTC
T ss_pred             HHHHhCC
Confidence            5665543

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=99.41  E-value=3.2e-12  Score=129.68  Aligned_cols=149  Identities=17%  Similarity=0.214  Sum_probs=106.4

Q ss_pred             eceecccHHhhhcccccceeecCchhhhHHHHhHHHHHHHHHHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCCCE
Q psy4626          23 VGCTHINAQTAAGKLTVPAMNVNDSVTKTKFDNLYMCRESIIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCV  102 (542)
Q Consensus        23 ~~~lh~~~~tA~~~L~~PV~~vn~s~~K~~fd~~~g~~~s~~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga~  102 (542)
                      +|..|++...+.....++|++..+.. +..-.+.....+..+..+....+..+.|++|+|+|+|.||+.+|+.|+++|++
T Consensus       102 ~G~d~id~~~~~~~~gi~v~~~~~~~-~~~~~~~~svae~a~~~~l~~~~~~l~g~~v~IiG~G~iG~~~a~~l~~~G~~  180 (293)
T 3d4o_A          102 SGISNTYLNQCMKKTNRTLVKLMERD-DIAIYNSIPTAEGTIMMAIQHTDFTIHGANVAVLGLGRVGMSVARKFAALGAK  180 (293)
T ss_dssp             ESSCCHHHHHHHHHHTCEEEEGGGCH-HHHHHHHHHHHHHHHHHHHHHCSSCSTTCEEEEECCSHHHHHHHHHHHHTTCE
T ss_pred             ecCCCHHHHHHHHHcCCeEEEecCCc-eeeeeccHhHHHHHHHHHHHhcCCCCCCCEEEEEeeCHHHHHHHHHHHhCCCE
Confidence            56778876333335567888876411 00001111222333322222234578999999999999999999999999999


Q ss_pred             EEEEeCCchhhhhhhcCCceee---CHHHHhcCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCCCcccChH
Q psy4626         103 IYITEIDPICALQACMDGFSVV---KLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVN  173 (542)
Q Consensus       103 Viv~d~dp~r~~~A~~~G~~v~---~l~e~l~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g~~eid~~  173 (542)
                      |+++|+++.+...+...|+...   +++++++++|+|+.++.. ++++.+.++.||+|++++|+++++..+++.
T Consensus       181 V~~~dr~~~~~~~~~~~g~~~~~~~~l~~~l~~aDvVi~~~p~-~~i~~~~l~~mk~~~~lin~ar~~~~~~~~  253 (293)
T 3d4o_A          181 VKVGARESDLLARIAEMGMEPFHISKAAQELRDVDVCINTIPA-LVVTANVLAEMPSHTFVIDLASKPGGTDFR  253 (293)
T ss_dssp             EEEEESSHHHHHHHHHTTSEEEEGGGHHHHTTTCSEEEECCSS-CCBCHHHHHHSCTTCEEEECSSTTCSBCHH
T ss_pred             EEEEECCHHHHHHHHHCCCeecChhhHHHHhcCCCEEEECCCh-HHhCHHHHHhcCCCCEEEEecCCCCCCCHH
Confidence            9999998876555555676643   567788999999999854 788888999999999999999987656554

>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1

Probab=99.39  E-value=1.6e-12  Score=134.69  Aligned_cols=105  Identities=21%  Similarity=0.397  Sum_probs=86.0

Q ss_pred             CccccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCCcEEEEcCC----CcccCC
Q psy4626          72 DVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATG----NKNVVT  147 (542)
Q Consensus        72 ~~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~aDvVi~atG----~~~lI~  147 (542)
                      +..+.|++|+|+|+|.||+.+|+.|+++|++|+++|+++...  + ..++...+++++++.+|+|+.+..    +.++++
T Consensus       140 ~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~--~-~~~~~~~~l~ell~~aDvV~~~~P~~~~t~~li~  216 (333)
T 1dxy_A          140 GKELGQQTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYPMKG--D-HPDFDYVSLEDLFKQSDVIDLHVPGIEQNTHIIN  216 (333)
T ss_dssp             CCCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSS--C-CTTCEECCHHHHHHHCSEEEECCCCCGGGTTSBC
T ss_pred             ccCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCcchh--h-HhccccCCHHHHHhcCCEEEEcCCCchhHHHHhC
Confidence            457899999999999999999999999999999999877543  1 223456688999999999999753    678899


Q ss_pred             HHHHhccCCCeEEEeccCCC---cccChHhhcCCC
Q psy4626         148 REHMDKMKNGCVVCNMGHSN---TEIDVNSLRTPD  179 (542)
Q Consensus       148 ~e~l~~mk~GailvnvG~g~---~eid~~aL~~~~  179 (542)
                      .+.|+.||+|++++|+||+.   .+....+|..+.
T Consensus       217 ~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~g~  251 (333)
T 1dxy_A          217 EAAFNLMKPGAIVINTARPNLIDTQAMLSNLKSGK  251 (333)
T ss_dssp             HHHHHHSCTTEEEEECSCTTSBCHHHHHHHHHTTS
T ss_pred             HHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhCC
Confidence            88999999999999999995   233345666553

>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A*

Probab=99.39  E-value=4.8e-12  Score=131.88  Aligned_cols=154  Identities=16%  Similarity=0.247  Sum_probs=106.6

Q ss_pred             ceecccHHhhhcccccceeecCchhhhHHHHhHHHHHHHHH------H-HHHhh--------------cCccccCcEEEE
Q psy4626          24 GCTHINAQTAAGKLTVPAMNVNDSVTKTKFDNLYMCRESII------D-SLKRS--------------TDVMFGGKQVVL   82 (542)
Q Consensus        24 ~~lh~~~~tA~~~L~~PV~~vn~s~~K~~fd~~~g~~~s~~------~-ai~r~--------------~~~~l~GktVvV   82 (542)
                      |..|++.+.+. ...++|.++.+.......+...+.--++.      + .+++.              ....+.|++|+|
T Consensus        95 G~d~id~~~~~-~~gI~V~n~~~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~~~l~g~tvGI  173 (347)
T 1mx3_A           95 GFDNIDIKSAG-DLGIAVCNVPAASVEETADSTLCHILNLYRRATWLHQALREGTRVQSVEQIREVASGAARIRGETLGI  173 (347)
T ss_dssp             CCTTBCHHHHH-HTTCEEECCCSTTHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCCCSHHHHHHHTTTCCCCTTCEEEE
T ss_pred             ccCcccHHHHH-hCCceEEECCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCcccccccccccccCccCCCCCEEEE
Confidence            55688876554 45678888876543333222222111110      0 01000              013689999999


Q ss_pred             EcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCcee-eCHHHHhcCCcEEEEcC----CCcccCCHHHHhccCCC
Q psy4626          83 CGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV-VKLNEVIRTVDIVVTAT----GNKNVVTREHMDKMKNG  157 (542)
Q Consensus        83 iG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v-~~l~e~l~~aDvVi~at----G~~~lI~~e~l~~mk~G  157 (542)
                      +|+|.||+.+|+.|+++|++|+++|+++.+.. +...|+.. .+++++++.+|+|+.+.    .+.++++++.|+.||+|
T Consensus       174 IG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~-~~~~g~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~g  252 (347)
T 1mx3_A          174 IGLGRVGQAVALRAKAFGFNVLFYDPYLSDGV-ERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQG  252 (347)
T ss_dssp             ECCSHHHHHHHHHHHTTTCEEEEECTTSCTTH-HHHHTCEECSSHHHHHHHCSEEEECCCCCTTCTTSBSHHHHTTSCTT
T ss_pred             EeECHHHHHHHHHHHHCCCEEEEECCCcchhh-HhhcCCeecCCHHHHHhcCCEEEEcCCCCHHHHHHhHHHHHhcCCCC
Confidence            99999999999999999999999998765432 33456654 47899999999999964    36789998899999999


Q ss_pred             eEEEeccCCCc---ccChHhhcCCC
Q psy4626         158 CVVCNMGHSNT---EIDVNSLRTPD  179 (542)
Q Consensus       158 ailvnvG~g~~---eid~~aL~~~~  179 (542)
                      ++++|+||+..   +...++|..+.
T Consensus       253 ailIN~arg~~vd~~aL~~aL~~g~  277 (347)
T 1mx3_A          253 AFLVNTARGGLVDEKALAQALKEGR  277 (347)
T ss_dssp             EEEEECSCTTSBCHHHHHHHHHHTS
T ss_pred             CEEEECCCChHHhHHHHHHHHHhCC
Confidence            99999999962   22344565543

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1

Probab=99.38  E-value=3.4e-12  Score=131.52  Aligned_cols=142  Identities=11%  Similarity=0.177  Sum_probs=103.1

Q ss_pred             ceecccHHhhhcccccceeecCchhhhHHHHhHHHHHHHH-----------HHHHHh------hcCccccCcEEEEEcCC
Q psy4626          24 GCTHINAQTAAGKLTVPAMNVNDSVTKTKFDNLYMCRESI-----------IDSLKR------STDVMFGGKQVVLCGYG   86 (542)
Q Consensus        24 ~~lh~~~~tA~~~L~~PV~~vn~s~~K~~fd~~~g~~~s~-----------~~ai~r------~~~~~l~GktVvViG~G   86 (542)
                      |..|++.+.+. ...++|.++.+.......+...+.--+.           ..+.+.      ..+..+.|++|+|+|+|
T Consensus        77 G~d~id~~~~~-~~gi~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~l~g~~vgIIG~G  155 (320)
T 1gdh_A           77 GFDHIDLDACK-ARGIKVGNAPHGVTVATAEIAMLLLLGSARRAGEGEKMIRTRSWPGWEPLELVGEKLDNKTLGIYGFG  155 (320)
T ss_dssp             CCTTBCHHHHH-HTTCEEECCCCSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCTTTTCBCCCTTCEEEEECCS
T ss_pred             ccccccHHHHH-hCCcEEEEcCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHcCCCCccccccccCcCCCCCEEEEECcC
Confidence            45577776654 4567888887754433333222221111           111111      11246899999999999


Q ss_pred             hhHHHHHHHHHhCCCEEEEEeC-CchhhhhhhcCCceee-CHHHHhcCCcEEEEcCC----CcccCCHHHHhccCCCeEE
Q psy4626          87 EVGKGCCQSLKGLGCVIYITEI-DPICALQACMDGFSVV-KLNEVIRTVDIVVTATG----NKNVVTREHMDKMKNGCVV  160 (542)
Q Consensus        87 ~IG~~vA~~l~~~Ga~Viv~d~-dp~r~~~A~~~G~~v~-~l~e~l~~aDvVi~atG----~~~lI~~e~l~~mk~Gail  160 (542)
                      .||+.+|+.++++|++|+++|+ ++.+. .+...|+... +++++++++|+|+.+..    +.++++++.++.||+|+++
T Consensus       156 ~IG~~~A~~l~~~G~~V~~~d~~~~~~~-~~~~~g~~~~~~l~ell~~aDvVil~~p~~~~t~~~i~~~~l~~mk~gail  234 (320)
T 1gdh_A          156 SIGQALAKRAQGFDMDIDYFDTHRASSS-DEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFFNKATIKSLPQGAIV  234 (320)
T ss_dssp             HHHHHHHHHHHTTTCEEEEECSSCCCHH-HHHHHTCEECSSHHHHHHHCSEEEECCCCCTTTTTCBSHHHHTTSCTTEEE
T ss_pred             HHHHHHHHHHHHCCCEEEEECCCCcChh-hhhhcCcEEcCCHHHHHhhCCEEEEeccCchHHHhhcCHHHHhhCCCCcEE
Confidence            9999999999999999999998 77653 3445677666 78899999999999753    6788988899999999999


Q ss_pred             EeccCCC
Q psy4626         161 CNMGHSN  167 (542)
Q Consensus       161 vnvG~g~  167 (542)
                      +|+|++.
T Consensus       235 In~arg~  241 (320)
T 1gdh_A          235 VNTARGD  241 (320)
T ss_dssp             EECSCGG
T ss_pred             EECCCCc
Confidence            9999985

>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A

Probab=99.37  E-value=1.3e-12  Score=134.46  Aligned_cols=107  Identities=13%  Similarity=0.145  Sum_probs=84.4

Q ss_pred             CccccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCCcEEEEcC----CCcccCC
Q psy4626          72 DVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTAT----GNKNVVT  147 (542)
Q Consensus        72 ~~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~aDvVi~at----G~~~lI~  147 (542)
                      ...+.|++|+|+|+|.||+.+|++|+++|++|+++|+++......... ....+++++++++|+|+.+.    .+.++++
T Consensus       134 ~~~l~g~tvGIiG~G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~-~~~~~l~ell~~aDiV~l~~Plt~~t~~li~  212 (315)
T 3pp8_A          134 EYTREEFSVGIMGAGVLGAKVAESLQAWGFPLRCWSRSRKSWPGVESY-VGREELRAFLNQTRVLINLLPNTAQTVGIIN  212 (315)
T ss_dssp             CCCSTTCCEEEECCSHHHHHHHHHHHTTTCCEEEEESSCCCCTTCEEE-ESHHHHHHHHHTCSEEEECCCCCGGGTTCBS
T ss_pred             CCCcCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCchhhhhhhhh-cccCCHHHHHhhCCEEEEecCCchhhhhhcc
Confidence            456889999999999999999999999999999999887532211100 01246888999999999964    3678999


Q ss_pred             HHHHhccCCCeEEEeccCCC---cccChHhhcCCC
Q psy4626         148 REHMDKMKNGCVVCNMGHSN---TEIDVNSLRTPD  179 (542)
Q Consensus       148 ~e~l~~mk~GailvnvG~g~---~eid~~aL~~~~  179 (542)
                      ++.|+.||+|+++||+|||.   .+...++|..+.
T Consensus       213 ~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~  247 (315)
T 3pp8_A          213 SELLDQLPDGAYVLNLARGVHVQEADLLAALDSGK  247 (315)
T ss_dssp             HHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTS
T ss_pred             HHHHhhCCCCCEEEECCCChhhhHHHHHHHHHhCC
Confidence            99999999999999999995   334455666553

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B

Probab=99.36  E-value=1.1e-11  Score=129.23  Aligned_cols=154  Identities=16%  Similarity=0.179  Sum_probs=107.9

Q ss_pred             ceecccHHhhhcccccceeecCchhhhHHHHhHHHHH---------------HHH---HH-HHH--hhcCccccCcEEEE
Q psy4626          24 GCTHINAQTAAGKLTVPAMNVNDSVTKTKFDNLYMCR---------------ESI---ID-SLK--RSTDVMFGGKQVVL   82 (542)
Q Consensus        24 ~~lh~~~~tA~~~L~~PV~~vn~s~~K~~fd~~~g~~---------------~s~---~~-ai~--r~~~~~l~GktVvV   82 (542)
                      |..|++...+. ...++|.++.+.......+...+.-               +..   |. ...  ...+..+.|++|+|
T Consensus        90 G~d~id~~~~~-~~gI~v~n~p~~~~~~vAe~~~~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~~~~~~~~l~g~~vgI  168 (348)
T 2w2k_A           90 GFDWLDLDALN-ERGVAFANSRGAGDTATSDLALYLILSVFRLASYSERAARTGDPETFNRVHLEIGKSAHNPRGHVLGA  168 (348)
T ss_dssp             CCTTBCHHHHH-HTTCEEECCTTTTHHHHHHHHHHHHHHHHHTHHHHHHHHTTCCHHHHHHHHHHHHTTCCCSTTCEEEE
T ss_pred             cccccCHHHHH-hCCcEEEECCCCCcHHHHHHHHHHHHHHHhChHHHHHHHHcCCCcccccccccccccCcCCCCCEEEE
Confidence            55688876653 4567888877654333222221111               111   41 100  01245789999999


Q ss_pred             EcCChhHHHHHHHHH-hCCCEEEEEeCCchhhhhhhcCCceee-CHHHHhcCCcEEEEcCC----CcccCCHHHHhccCC
Q psy4626          83 CGYGEVGKGCCQSLK-GLGCVIYITEIDPICALQACMDGFSVV-KLNEVIRTVDIVVTATG----NKNVVTREHMDKMKN  156 (542)
Q Consensus        83 iG~G~IG~~vA~~l~-~~Ga~Viv~d~dp~r~~~A~~~G~~v~-~l~e~l~~aDvVi~atG----~~~lI~~e~l~~mk~  156 (542)
                      +|+|.||+.+|+.++ ++|++|+++|+++.+...+...|+... +++++++.+|+|+.++.    +.++++++.++.||+
T Consensus       169 IG~G~IG~~vA~~l~~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVil~vp~~~~t~~li~~~~l~~mk~  248 (348)
T 2w2k_A          169 VGLGAIQKEIARKAVHGLGMKLVYYDVAPADAETEKALGAERVDSLEELARRSDCVSVSVPYMKLTHHLIDEAFFAAMKP  248 (348)
T ss_dssp             ECCSHHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHTCEECSSHHHHHHHCSEEEECCCCSGGGTTCBCHHHHHHSCT
T ss_pred             EEECHHHHHHHHHHHHhcCCEEEEECCCCcchhhHhhcCcEEeCCHHHHhccCCEEEEeCCCChHHHHHhhHHHHhcCCC
Confidence            999999999999999 999999999998765544444566655 78899999999999753    568898889999999


Q ss_pred             CeEEEeccCCCc---ccChHhhcCC
Q psy4626         157 GCVVCNMGHSNT---EIDVNSLRTP  178 (542)
Q Consensus       157 GailvnvG~g~~---eid~~aL~~~  178 (542)
                      |++++|++++..   +...++|..+
T Consensus       249 gailin~srg~~vd~~aL~~aL~~~  273 (348)
T 2w2k_A          249 GSRIVNTARGPVISQDALIAALKSG  273 (348)
T ss_dssp             TEEEEECSCGGGBCHHHHHHHHHTT
T ss_pred             CCEEEECCCCchhCHHHHHHHHHhC
Confidence            999999999952   2234455544

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=99.36  E-value=1.3e-11  Score=125.55  Aligned_cols=148  Identities=14%  Similarity=0.224  Sum_probs=104.7

Q ss_pred             eceecccHHhhhcccccceeecCchhhhHHHHhHHHHHHHHHHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCCCE
Q psy4626          23 VGCTHINAQTAAGKLTVPAMNVNDSVTKTKFDNLYMCRESIIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCV  102 (542)
Q Consensus        23 ~~~lh~~~~tA~~~L~~PV~~vn~s~~K~~fd~~~g~~~s~~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga~  102 (542)
                      ++..|++...+.....++|+++.+...-....+. ...+..|....+..+..+.|++|+|+|+|.||+.+|+.|+++|++
T Consensus       104 ~g~~~~d~~~~~~~~gi~v~~~~~~~~v~~~r~~-~~~~g~~~~~~~~~~~~l~g~~v~IiG~G~iG~~~a~~l~~~G~~  182 (300)
T 2rir_A          104 SGISNAYLENIAAQAKRKLVKLFERDDIAIYNSI-PTVEGTIMLAIQHTDYTIHGSQVAVLGLGRTGMTIARTFAALGAN  182 (300)
T ss_dssp             ESSCCHHHHHHHHHTTCCEEEGGGSHHHHHHHHH-HHHHHHHHHHHHTCSSCSTTSEEEEECCSHHHHHHHHHHHHTTCE
T ss_pred             EecCCHHHHHHHHHCCCEEEeecCCCceEEEcCc-cHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHCCCE
Confidence            4567777333333556677777664211111111 112333432122234578999999999999999999999999999


Q ss_pred             EEEEeCCchhhhhhhcCCcee---eCHHHHhcCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCCCcccCh
Q psy4626         103 IYITEIDPICALQACMDGFSV---VKLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDV  172 (542)
Q Consensus       103 Viv~d~dp~r~~~A~~~G~~v---~~l~e~l~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g~~eid~  172 (542)
                      |+++|+++.+...+...|+.+   .+++++++++|+||.++.. ++++.+.++.||+|++++|+++++...++
T Consensus       183 V~~~d~~~~~~~~~~~~g~~~~~~~~l~~~l~~aDvVi~~~p~-~~i~~~~~~~mk~g~~lin~a~g~~~~~~  254 (300)
T 2rir_A          183 VKVGARSSAHLARITEMGLVPFHTDELKEHVKDIDICINTIPS-MILNQTVLSSMTPKTLILDLASRPGGTDF  254 (300)
T ss_dssp             EEEEESSHHHHHHHHHTTCEEEEGGGHHHHSTTCSEEEECCSS-CCBCHHHHTTSCTTCEEEECSSTTCSBCH
T ss_pred             EEEEECCHHHHHHHHHCCCeEEchhhHHHHhhCCCEEEECCCh-hhhCHHHHHhCCCCCEEEEEeCCCCCcCH
Confidence            999999987655444456654   3577888999999999865 68888899999999999999998655544

>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans}

Probab=99.35  E-value=3.8e-12  Score=131.75  Aligned_cols=103  Identities=26%  Similarity=0.424  Sum_probs=84.6

Q ss_pred             ccccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCCcEEEEcC----CCcccCCH
Q psy4626          73 VMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTAT----GNKNVVTR  148 (542)
Q Consensus        73 ~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~aDvVi~at----G~~~lI~~  148 (542)
                      ..+.|++|+|+|+|.||+.+|+.|+++|++|+++|+++.+..   ..++...+++++++.+|+|+.+.    .+.+++++
T Consensus       142 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~---~~~~~~~~l~ell~~aDvV~~~~p~t~~t~~li~~  218 (331)
T 1xdw_A          142 KEVRNCTVGVVGLGRIGRVAAQIFHGMGATVIGEDVFEIKGI---EDYCTQVSLDEVLEKSDIITIHAPYIKENGAVVTR  218 (331)
T ss_dssp             CCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCSC---TTTCEECCHHHHHHHCSEEEECCCCCTTTCCSBCH
T ss_pred             cCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCccHHH---HhccccCCHHHHHhhCCEEEEecCCchHHHHHhCH
Confidence            468999999999999999999999999999999998775431   12345568899999999999964    36789998


Q ss_pred             HHHhccCCCeEEEeccCCC---cccChHhhcCC
Q psy4626         149 EHMDKMKNGCVVCNMGHSN---TEIDVNSLRTP  178 (542)
Q Consensus       149 e~l~~mk~GailvnvG~g~---~eid~~aL~~~  178 (542)
                      +.|+.||+|++++|+||+.   .+....+|..+
T Consensus       219 ~~l~~mk~ga~lin~srg~~vd~~aL~~aL~~g  251 (331)
T 1xdw_A          219 DFLKKMKDGAILVNCARGQLVDTEAVIEAVESG  251 (331)
T ss_dssp             HHHHTSCTTEEEEECSCGGGBCHHHHHHHHHHT
T ss_pred             HHHhhCCCCcEEEECCCcccccHHHHHHHHHhC
Confidence            8999999999999999985   23334566554

>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum}

Probab=99.33  E-value=1.3e-11  Score=125.69  Aligned_cols=102  Identities=15%  Similarity=0.267  Sum_probs=83.6

Q ss_pred             ccccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCcee-eCHHHHhcCCcEEEEcC----CCcccCC
Q psy4626          73 VMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV-VKLNEVIRTVDIVVTAT----GNKNVVT  147 (542)
Q Consensus        73 ~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v-~~l~e~l~~aDvVi~at----G~~~lI~  147 (542)
                      ..+.|++|+|+|+|.||+.+|+.|+++|++|+++|+++.....     +.. .+++++++++|+|+.+.    .+.++++
T Consensus       118 ~~l~g~tvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~-----~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~  192 (290)
T 3gvx_A          118 TLLYGKALGILGYGGIGRRVAHLAKAFGMRVIAYTRSSVDQNV-----DVISESPADLFRQSDFVLIAIPLTDKTRGMVN  192 (290)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSCCCTTC-----SEECSSHHHHHHHCSEEEECCCCCTTTTTCBS
T ss_pred             eeeecchheeeccCchhHHHHHHHHhhCcEEEEEecccccccc-----ccccCChHHHhhccCeEEEEeeccccchhhhh
Confidence            3588999999999999999999999999999999987754321     333 48899999999999965    3678899


Q ss_pred             HHHHhccCCCeEEEeccCCC---cccChHhhcCCC
Q psy4626         148 REHMDKMKNGCVVCNMGHSN---TEIDVNSLRTPD  179 (542)
Q Consensus       148 ~e~l~~mk~GailvnvG~g~---~eid~~aL~~~~  179 (542)
                      .+.|+.||+|++++|+||+.   .+...++|..+.
T Consensus       193 ~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~  227 (290)
T 3gvx_A          193 SRLLANARKNLTIVNVARADVVSKPDMIGFLKERS  227 (290)
T ss_dssp             HHHHTTCCTTCEEEECSCGGGBCHHHHHHHHHHCT
T ss_pred             HHHHhhhhcCceEEEeehhcccCCcchhhhhhhcc
Confidence            89999999999999999995   333345665543

>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A*

Probab=99.32  E-value=8.1e-12  Score=129.39  Aligned_cols=103  Identities=20%  Similarity=0.288  Sum_probs=84.1

Q ss_pred             ccccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceee-CHHHHhcCCcEEEEcCC----CcccCC
Q psy4626          73 VMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVV-KLNEVIRTVDIVVTATG----NKNVVT  147 (542)
Q Consensus        73 ~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~-~l~e~l~~aDvVi~atG----~~~lI~  147 (542)
                      ..+.|++|+|+|+|.||+.+|+.++++|++|+++|+++.+..  .. ++... +++++++++|+|+.+..    ++++++
T Consensus       142 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~--~~-~~~~~~~l~ell~~aDvV~l~~p~~~~t~~li~  218 (333)
T 1j4a_A          142 REVRDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRNPEL--EK-KGYYVDSLDDLYKQADVISLHVPDVPANVHMIN  218 (333)
T ss_dssp             CCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCHHH--HH-TTCBCSCHHHHHHHCSEEEECSCCCGGGTTCBS
T ss_pred             ccCCCCEEEEEccCHHHHHHHHHHHHCCCEEEEECCCcchhH--Hh-hCeecCCHHHHHhhCCEEEEcCCCcHHHHHHHh
Confidence            468999999999999999999999999999999998876542  12 24455 78899999999999754    668898


Q ss_pred             HHHHhccCCCeEEEeccCCC---cccChHhhcCC
Q psy4626         148 REHMDKMKNGCVVCNMGHSN---TEIDVNSLRTP  178 (542)
Q Consensus       148 ~e~l~~mk~GailvnvG~g~---~eid~~aL~~~  178 (542)
                      ++.|+.||+|++++|+||+.   .+....+|..+
T Consensus       219 ~~~l~~mk~ga~lIn~arg~~vd~~aL~~aL~~g  252 (333)
T 1j4a_A          219 DESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSG  252 (333)
T ss_dssp             HHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHHT
T ss_pred             HHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhC
Confidence            88999999999999999985   23334455544

>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1

Probab=99.31  E-value=2.3e-11  Score=124.52  Aligned_cols=89  Identities=24%  Similarity=0.357  Sum_probs=77.1

Q ss_pred             cccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCCcEEEEcC----CCcccCCHH
Q psy4626          74 MFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTAT----GNKNVVTRE  149 (542)
Q Consensus        74 ~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~aDvVi~at----G~~~lI~~e  149 (542)
                      .+.|++++|+|+|.||+.+|+.|+++|++|+++|+++. .  .  ......+++++++.+|+|+.+.    .+.++++++
T Consensus       121 ~l~g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~dr~~~-~--~--~~~~~~~l~ell~~aDvV~l~~P~~~~t~~~i~~~  195 (303)
T 1qp8_A          121 LIQGEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPK-E--G--PWRFTNSLEEALREARAAVCALPLNKHTRGLVKYQ  195 (303)
T ss_dssp             CCTTCEEEEESCSTHHHHHHHHHHHTTCEEEEECSSCC-C--S--SSCCBSCSHHHHTTCSEEEECCCCSTTTTTCBCHH
T ss_pred             CCCCCEEEEEccCHHHHHHHHHHHHCCCEEEEECCCcc-c--c--CcccCCCHHHHHhhCCEEEEeCcCchHHHHHhCHH
Confidence            68999999999999999999999999999999998775 1  1  1223457889999999999975    477899988


Q ss_pred             HHhccCCCeEEEeccCCC
Q psy4626         150 HMDKMKNGCVVCNMGHSN  167 (542)
Q Consensus       150 ~l~~mk~GailvnvG~g~  167 (542)
                      .|+.||+|++++|+||++
T Consensus       196 ~l~~mk~gailin~srg~  213 (303)
T 1qp8_A          196 HLALMAEDAVFVNVGRAE  213 (303)
T ss_dssp             HHTTSCTTCEEEECSCGG
T ss_pred             HHhhCCCCCEEEECCCCc
Confidence            999999999999999985

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*

Probab=99.31  E-value=2.1e-11  Score=133.65  Aligned_cols=142  Identities=16%  Similarity=0.256  Sum_probs=103.4

Q ss_pred             ceecccHHhhhcccccceeecCchhhhHHHHhHHHHHHH-----------HHHHHH-h--hcCccccCcEEEEEcCChhH
Q psy4626          24 GCTHINAQTAAGKLTVPAMNVNDSVTKTKFDNLYMCRES-----------IIDSLK-R--STDVMFGGKQVVLCGYGEVG   89 (542)
Q Consensus        24 ~~lh~~~~tA~~~L~~PV~~vn~s~~K~~fd~~~g~~~s-----------~~~ai~-r--~~~~~l~GktVvViG~G~IG   89 (542)
                      |..|++.+.+. ...++|+++.+..+....+...+.--+           +-.+-+ +  ..+..+.|++++|+|+|.||
T Consensus        76 G~d~id~~~~~-~~gi~v~n~p~~~~~~vAE~~~~~~l~~~R~~~~~~~~~~~g~w~~~~~~~~~l~g~~vgIIG~G~IG  154 (529)
T 1ygy_A           76 GLDNVDVDAAT-ARGVLVVNAPTSNIHSAAEHALALLLAASRQIPAADASLREHTWKRSSFSGTEIFGKTVGVVGLGRIG  154 (529)
T ss_dssp             CCTTBCHHHHH-HTTCEEECCTTSSHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCGGGCCBCCCTTCEEEEECCSHHH
T ss_pred             CcCccCHhHHH-hCCeEEEECCCcchHHHHHHHHHHHHHHHhhhHHHHHHHHhCCCcccCcCccccCCCEEEEEeeCHHH
Confidence            44588876554 456788887765433332222222111           111111 1  12356899999999999999


Q ss_pred             HHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCCcEEEEcC----CCcccCCHHHHhccCCCeEEEeccC
Q psy4626          90 KGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTAT----GNKNVVTREHMDKMKNGCVVCNMGH  165 (542)
Q Consensus        90 ~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~aDvVi~at----G~~~lI~~e~l~~mk~GailvnvG~  165 (542)
                      +.+|+.|+++|++|+++|+++.+ ..+...|+...+++++++.||+|+.|+    .+.++++.+.++.||+|++++|+|+
T Consensus       155 ~~vA~~l~~~G~~V~~~d~~~~~-~~a~~~g~~~~~l~e~~~~aDvV~l~~P~~~~t~~~i~~~~~~~~k~g~ilin~ar  233 (529)
T 1ygy_A          155 QLVAQRIAAFGAYVVAYDPYVSP-ARAAQLGIELLSLDDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAAR  233 (529)
T ss_dssp             HHHHHHHHTTTCEEEEECTTSCH-HHHHHHTCEECCHHHHHHHCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSC
T ss_pred             HHHHHHHHhCCCEEEEECCCCCh-hHHHhcCcEEcCHHHHHhcCCEEEECCCCchHHHHHhCHHHHhCCCCCCEEEECCC
Confidence            99999999999999999987743 335566777778999999999999976    4678898778999999999999999


Q ss_pred             CC
Q psy4626         166 SN  167 (542)
Q Consensus       166 g~  167 (542)
                      +.
T Consensus       234 g~  235 (529)
T 1ygy_A          234 GG  235 (529)
T ss_dssp             TT
T ss_pred             Cc
Confidence            86

>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}

Probab=99.31  E-value=5.4e-11  Score=122.10  Aligned_cols=137  Identities=18%  Similarity=0.308  Sum_probs=99.6

Q ss_pred             ceecccHHhhhcccccceeecCchhhhHHHHhHHHHHHHH-----------HHHHHh------hcCccccCcEEEEEcCC
Q psy4626          24 GCTHINAQTAAGKLTVPAMNVNDSVTKTKFDNLYMCRESI-----------IDSLKR------STDVMFGGKQVVLCGYG   86 (542)
Q Consensus        24 ~~lh~~~~tA~~~L~~PV~~vn~s~~K~~fd~~~g~~~s~-----------~~ai~r------~~~~~l~GktVvViG~G   86 (542)
                      |..|++.+.+. ...++|+++.+.......+...+.--+.           ..+-+.      ..+..+.|++|+|+|+|
T Consensus        75 G~d~id~~~~~-~~gi~v~n~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~l~g~~vgIIG~G  153 (311)
T 2cuk_A           75 GVDHVDLEAAR-ERGIRVTHTPGVLTEATADLTLALLLAVARRVVEGAAYARDGLWKAWHPELLLGLDLQGLTLGLVGMG  153 (311)
T ss_dssp             CCTTBCHHHHH-TTTCEEECCCSTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCTTTTCBCCCTTCEEEEECCS
T ss_pred             CccccCHHHHH-hCCcEEEECCCCChHHHHHHHHHHHHHHHcChHHHHHHHHcCCCCccccccccCcCCCCCEEEEEEEC
Confidence            55677776554 4567888887754443333222221111           011110      01246899999999999


Q ss_pred             hhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCCcEEEEcC----CCcccCCHHHHhccCCCeEEEe
Q psy4626          87 EVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTAT----GNKNVVTREHMDKMKNGCVVCN  162 (542)
Q Consensus        87 ~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~aDvVi~at----G~~~lI~~e~l~~mk~Gailvn  162 (542)
                      .||+.+|+.++++|++|+++|+++.+..      ....+++++++.+|+|+.+.    .+.++++++.++.||+|++++|
T Consensus       154 ~IG~~~A~~l~~~G~~V~~~d~~~~~~~------~~~~~l~ell~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lin  227 (311)
T 2cuk_A          154 RIGQAVAKRALAFGMRVVYHARTPKPLP------YPFLSLEELLKEADVVSLHTPLTPETHRLLNRERLFAMKRGAILLN  227 (311)
T ss_dssp             HHHHHHHHHHHHTTCEEEEECSSCCSSS------SCBCCHHHHHHHCSEEEECCCCCTTTTTCBCHHHHTTSCTTCEEEE
T ss_pred             HHHHHHHHHHHHCCCEEEEECCCCcccc------cccCCHHHHHhhCCEEEEeCCCChHHHhhcCHHHHhhCCCCcEEEE
Confidence            9999999999999999999998775432      23567889999999999974    3678898889999999999999


Q ss_pred             ccCCC
Q psy4626         163 MGHSN  167 (542)
Q Consensus       163 vG~g~  167 (542)
                      +||+.
T Consensus       228 ~srg~  232 (311)
T 2cuk_A          228 TARGA  232 (311)
T ss_dssp             CSCGG
T ss_pred             CCCCC
Confidence            99985

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A*

Probab=99.26  E-value=3e-11  Score=125.22  Aligned_cols=149  Identities=19%  Similarity=0.232  Sum_probs=103.3

Q ss_pred             ceecccHHhhhcccccceeecCchhhhHHHHhHHHHHHH-----------HHHHHHhh----cCccccCcEEEEEcCChh
Q psy4626          24 GCTHINAQTAAGKLTVPAMNVNDSVTKTKFDNLYMCRES-----------IIDSLKRS----TDVMFGGKQVVLCGYGEV   88 (542)
Q Consensus        24 ~~lh~~~~tA~~~L~~PV~~vn~s~~K~~fd~~~g~~~s-----------~~~ai~r~----~~~~l~GktVvViG~G~I   88 (542)
                      |..|++.+.+. ...++|.++.+.......+...+.--+           +..+-+..    .+..+.|++++|+|+|.|
T Consensus        97 G~d~id~~~~~-~~gI~v~n~pg~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~l~g~~vgIIG~G~i  175 (333)
T 3ba1_A           97 GLDKVDLIKCE-EKGVRVTNTPDVLTDDVADLAIGLILAVLRRICECDKYVRRGAWKFGDFKLTTKFSGKRVGIIGLGRI  175 (333)
T ss_dssp             CCTTBCHHHHH-HHTCEEECCCSTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTGGGGCCCCCCCCCTTCCEEEECCSHH
T ss_pred             cccccCHHHHH-hCCcEEEECCCcchHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCccccccccccCCCEEEEECCCHH
Confidence            44577665543 445788888775443333222222111           11111111    134689999999999999


Q ss_pred             HHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce-eeCHHHHhcCCcEEEEcCC----CcccCCHHHHhccCCCeEEEec
Q psy4626          89 GKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVKLNEVIRTVDIVVTATG----NKNVVTREHMDKMKNGCVVCNM  163 (542)
Q Consensus        89 G~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~-v~~l~e~l~~aDvVi~atG----~~~lI~~e~l~~mk~Gailvnv  163 (542)
                      |+.+|+.++++|++|+++|+++.+.     .|+. ..+++++++++|+|+.++.    ++++++++.++.||+|++++|+
T Consensus       176 G~~vA~~l~~~G~~V~~~dr~~~~~-----~g~~~~~~l~ell~~aDvVil~vP~~~~t~~li~~~~l~~mk~gailIn~  250 (333)
T 3ba1_A          176 GLAVAERAEAFDCPISYFSRSKKPN-----TNYTYYGSVVELASNSDILVVACPLTPETTHIINREVIDALGPKGVLINI  250 (333)
T ss_dssp             HHHHHHHHHTTTCCEEEECSSCCTT-----CCSEEESCHHHHHHTCSEEEECSCCCGGGTTCBCHHHHHHHCTTCEEEEC
T ss_pred             HHHHHHHHHHCCCEEEEECCCchhc-----cCceecCCHHHHHhcCCEEEEecCCChHHHHHhhHHHHhcCCCCCEEEEC
Confidence            9999999999999999999887542     2444 4578899999999999753    5688988899999999999999


Q ss_pred             cCCCc---ccChHhhcCC
Q psy4626         164 GHSNT---EIDVNSLRTP  178 (542)
Q Consensus       164 G~g~~---eid~~aL~~~  178 (542)
                      +++..   +....+|..+
T Consensus       251 srG~~vd~~aL~~aL~~g  268 (333)
T 3ba1_A          251 GRGPHVDEPELVSALVEG  268 (333)
T ss_dssp             SCGGGBCHHHHHHHHHHT
T ss_pred             CCCchhCHHHHHHHHHcC
Confidence            99952   2334455544

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=99.26  E-value=9.7e-11  Score=121.00  Aligned_cols=143  Identities=17%  Similarity=0.215  Sum_probs=103.1

Q ss_pred             ceecccHHhhhcccccceeecCchhhhHHHHhHHHHHHHHH-------HHHHhh----------cCccccCcEEEEEcCC
Q psy4626          24 GCTHINAQTAAGKLTVPAMNVNDSVTKTKFDNLYMCRESII-------DSLKRS----------TDVMFGGKQVVLCGYG   86 (542)
Q Consensus        24 ~~lh~~~~tA~~~L~~PV~~vn~s~~K~~fd~~~g~~~s~~-------~ai~r~----------~~~~l~GktVvViG~G   86 (542)
                      |..|++...+. ...++|+++.+.......+...+.--+..       ..+++.          .+..+.|++|+|+|+|
T Consensus        86 G~d~id~~~~~-~~gi~v~n~~~~~~~~vAe~~~~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~~vgIIG~G  164 (330)
T 2gcg_A           86 GIDHLALDEIK-KRGIRVGYTPDVLTDTTAELAVSLLLTTCRRLPEAIEEVKNGGWTSWKPLWLCGYGLTQSTVGIIGLG  164 (330)
T ss_dssp             CCTTBCHHHHH-HTTCEEECCCSTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCSCCTTSSCBCCCTTCEEEEECCS
T ss_pred             ccccccHHHHH-hCCceEEeCCCCChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCcccCcccccCcCCCCCEEEEECcC
Confidence            45577776553 45678888877544433332222211111       011110          1246889999999999


Q ss_pred             hhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCCcEEEEcCC----CcccCCHHHHhccCCCeEEEe
Q psy4626          87 EVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATG----NKNVVTREHMDKMKNGCVVCN  162 (542)
Q Consensus        87 ~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~aDvVi~atG----~~~lI~~e~l~~mk~Gailvn  162 (542)
                      .||+.+|+.++++|++|+++|+++.+...+...|....+++++++++|+|+.+..    +.++++.+.++.||+|++++|
T Consensus       165 ~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~l~e~l~~aDvVi~~vp~~~~t~~~i~~~~~~~mk~gailIn  244 (330)
T 2gcg_A          165 RIGQAIARRLKPFGVQRFLYTGRQPRPEEAAEFQAEFVSTPELAAQSDFIVVACSLTPATEGLCNKDFFQKMKETAVFIN  244 (330)
T ss_dssp             HHHHHHHHHHGGGTCCEEEEESSSCCHHHHHTTTCEECCHHHHHHHCSEEEECCCCCTTTTTCBSHHHHHHSCTTCEEEE
T ss_pred             HHHHHHHHHHHHCCCEEEEECCCCcchhHHHhcCceeCCHHHHHhhCCEEEEeCCCChHHHHhhCHHHHhcCCCCcEEEE
Confidence            9999999999999999999998876554445556666688899999999999763    567888788999999999999


Q ss_pred             ccCCC
Q psy4626         163 MGHSN  167 (542)
Q Consensus       163 vG~g~  167 (542)
                      ++++.
T Consensus       245 ~srg~  249 (330)
T 2gcg_A          245 ISRGD  249 (330)
T ss_dssp             CSCGG
T ss_pred             CCCCc
Confidence            99985

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii}

Probab=99.24  E-value=2e-10  Score=118.97  Aligned_cols=152  Identities=18%  Similarity=0.208  Sum_probs=105.8

Q ss_pred             ceecccHHhhhcccccceeecCchhhhHHHHhHHHHHHH---------------HHHHHH-hhcC----ccccCcEEEEE
Q psy4626          24 GCTHINAQTAAGKLTVPAMNVNDSVTKTKFDNLYMCRES---------------IIDSLK-RSTD----VMFGGKQVVLC   83 (542)
Q Consensus        24 ~~lh~~~~tA~~~L~~PV~~vn~s~~K~~fd~~~g~~~s---------------~~~ai~-r~~~----~~l~GktVvVi   83 (542)
                      |..|++...+. ...++|.++.+.......+...+.--+               .|.... ...+    ..+.|++|+|+
T Consensus        74 G~d~id~~~~~-~~gi~v~n~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~~l~g~~vgII  152 (333)
T 2d0i_A           74 GYDNIDLEEAT-KRGIYVTKVSGLLSEAVAEFTVGLIINLMRKIHYADKFIRRGEWESHAKIWTGFKRIESLYGKKVGIL  152 (333)
T ss_dssp             CCTTBCHHHHH-HTTCEEECCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCCCHHHHHTTSCCCCCSTTCEEEEE
T ss_pred             ccccccHHHHH-hCCcEEEeCCCcChHHHHHHHHHHHHHHHhHHHHHHHHHHcCCCCcCcccccCCcccCCCCcCEEEEE
Confidence            45577776554 456788888775443332222222111               121000 0123    46899999999


Q ss_pred             cCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCCcEEEEcCC----CcccCCHHHHhccCCCeE
Q psy4626          84 GYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATG----NKNVVTREHMDKMKNGCV  159 (542)
Q Consensus        84 G~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~aDvVi~atG----~~~lI~~e~l~~mk~Gai  159 (542)
                      |+|.||+.+|+.++++|++|+++|+++.+ ..+...|+...+++++++++|+|+.++.    +.++++++.++.||+| +
T Consensus       153 G~G~iG~~vA~~l~~~G~~V~~~d~~~~~-~~~~~~g~~~~~l~e~l~~aDiVil~vp~~~~t~~~i~~~~~~~mk~g-i  230 (333)
T 2d0i_A          153 GMGAIGKAIARRLIPFGVKLYYWSRHRKV-NVEKELKARYMDIDELLEKSDIVILALPLTRDTYHIINEERVKKLEGK-Y  230 (333)
T ss_dssp             CCSHHHHHHHHHHGGGTCEEEEECSSCCH-HHHHHHTEEECCHHHHHHHCSEEEECCCCCTTTTTSBCHHHHHHTBTC-E
T ss_pred             ccCHHHHHHHHHHHHCCCEEEEECCCcch-hhhhhcCceecCHHHHHhhCCEEEEcCCCChHHHHHhCHHHHhhCCCC-E
Confidence            99999999999999999999999998875 3344456666688899999999999753    5678887789999999 9


Q ss_pred             EEeccCCCc--cc-ChHhhcCC
Q psy4626         160 VCNMGHSNT--EI-DVNSLRTP  178 (542)
Q Consensus       160 lvnvG~g~~--ei-d~~aL~~~  178 (542)
                      ++|+|++..  +. ...+|..+
T Consensus       231 lin~srg~~vd~~aL~~aL~~~  252 (333)
T 2d0i_A          231 LVNIGRGALVDEKAVTEAIKQG  252 (333)
T ss_dssp             EEECSCGGGBCHHHHHHHHHTT
T ss_pred             EEECCCCcccCHHHHHHHHHcC
Confidence            999999852  22 23456544

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=99.22  E-value=9.2e-11  Score=121.43  Aligned_cols=94  Identities=19%  Similarity=0.260  Sum_probs=81.3

Q ss_pred             ccccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCCcEEEEcCC----CcccCCH
Q psy4626          73 VMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATG----NKNVVTR  148 (542)
Q Consensus        73 ~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~aDvVi~atG----~~~lI~~  148 (542)
                      ..+.|++|+|+|+|.||+.+|+.++++|++|+++|+++.+ ..+...|+...+++++++++|+|+.++.    +++++++
T Consensus       146 ~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~-~~~~~~g~~~~~l~~~l~~aDvVil~vp~~~~t~~~i~~  224 (334)
T 2dbq_A          146 YDVYGKTIGIIGLGRIGQAIAKRAKGFNMRILYYSRTRKE-EVERELNAEFKPLEDLLRESDFVVLAVPLTRETYHLINE  224 (334)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCH-HHHHHHCCEECCHHHHHHHCSEEEECCCCCTTTTTCBCH
T ss_pred             cCCCCCEEEEEccCHHHHHHHHHHHhCCCEEEEECCCcch-hhHhhcCcccCCHHHHHhhCCEEEECCCCChHHHHhhCH
Confidence            4689999999999999999999999999999999998866 3344456666788899999999999763    4578887


Q ss_pred             HHHhccCCCeEEEeccCCC
Q psy4626         149 EHMDKMKNGCVVCNMGHSN  167 (542)
Q Consensus       149 e~l~~mk~GailvnvG~g~  167 (542)
                      +.++.||+|++++|++++.
T Consensus       225 ~~~~~mk~~ailIn~srg~  243 (334)
T 2dbq_A          225 ERLKLMKKTAILINIARGK  243 (334)
T ss_dssp             HHHHHSCTTCEEEECSCGG
T ss_pred             HHHhcCCCCcEEEECCCCc
Confidence            8899999999999999985

>3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus}

Probab=99.07  E-value=4e-10  Score=116.78  Aligned_cols=189  Identities=14%  Similarity=0.213  Sum_probs=130.6

Q ss_pred             HHhcCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCCCcccChHhhcCCCcceeeeccceeeEecCCCCEEEEecCCC
Q psy4626         128 EVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIVLLAEGR  207 (542)
Q Consensus       128 e~l~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g~~eid~~aL~~~~l~v~~~~~~v~~y~~~dg~~I~LLa~Gr  207 (542)
                      +.++++|+++....+  -++++.|+.+++-..+...|.|-+.+|++++.++++.+..+..                    
T Consensus        38 ~~l~~ad~i~v~~~~--~i~~~~l~~~p~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~p~--------------------   95 (334)
T 3kb6_A           38 NELKKAELISVFVYD--KLTEELLSKMPRLKLIHTRSVGFDHIDLDYCKKKGILVTHIPA--------------------   95 (334)
T ss_dssp             HHHHHCSEEEECTTS--CBCHHHHHTCTTCCEEEESSSCCTTBCHHHHHHHTCEEECCTT--------------------
T ss_pred             HHhcCCCEEEEeCCC--CCCHHHHhcCCCCcEEEECCcccchhcHHHHHHCCCEEEECCC--------------------
Confidence            456889998775433  3778999999998899999999888999988765544432210                    


Q ss_pred             cccccCCCChhHHHhhHHHH------HHHHHHHHhcCCCCCCCCccccCChhhHHHHHHhcCCcccc----ccccccHHH
Q psy4626         208 LVNLSCSSLPSFVVSITACT------QALALIELFNAPSGRYKSDVYLLPKKMDEYVASLHLPTFDA----HLTELSDEQ  277 (542)
Q Consensus       208 Lvnl~~~thp~~vmd~sfa~------q~la~~~L~~~~~~~~~~gv~~lp~~~d~~VA~l~L~~lg~----~i~~lt~~~  277 (542)
                             .++..+-+..++.      ++-........  ++|...-.....       ++..+++|+    +|++..+++
T Consensus        96 -------~~~~~vAE~~~~l~L~~~r~~~~~~~~~~~--~~~~~~~~~~~~-------~l~g~tvGIiG~G~IG~~va~~  159 (334)
T 3kb6_A           96 -------YSPESVAEHTFAMILTLVKRLKRIEDRVKK--LNFSQDSEILAR-------ELNRLTLGVIGTGRIGSRVAMY  159 (334)
T ss_dssp             -------SCHHHHHHHHHHHHHHHHTTHHHHHHHHHT--TCCCCCGGGCBC-------CGGGSEEEEECCSHHHHHHHHH
T ss_pred             -------cCcHHHHHHHHHHHHHHhhccccccccccc--cccccccccccc-------eecCcEEEEECcchHHHHHHHh
Confidence                   0111111111111      11111111222  234332111111       345567777    999999999


Q ss_pred             HhhcCCCC--CCCCCCCccccCCeeeeehhhhcccCcEEEE----ccCCCCccCHhHHhcCCCCcEEEccCCCCcccccc
Q psy4626         278 AKYMGLNK--AGPFKPSYYSMDGFSVVKLNEVIRTVDIVVT----ATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVN  351 (542)
Q Consensus       278 a~~lg~~e--~~p~~a~ea~mdG~~v~~~~~a~~~~d~~~t----~tg~~~vi~~~~~~~mk~gail~n~gh~~~Ei~~~  351 (542)
                      ++++|+..  .||.+.-...-.|+...+++|++++||||+.    +..|+++|+.+.|++||+||+|+|+||+.+ ||-+
T Consensus       160 ~~~fg~~v~~~d~~~~~~~~~~~~~~~~l~ell~~sDivslh~Plt~~T~~li~~~~l~~mk~~a~lIN~aRG~i-Vde~  238 (334)
T 3kb6_A          160 GLAFGMKVLCYDVVKREDLKEKGCVYTSLDELLKESDVISLHVPYTKETHHMINEERISLMKDGVYLINTARGKV-VDTD  238 (334)
T ss_dssp             HHHTTCEEEEECSSCCHHHHHTTCEECCHHHHHHHCSEEEECCCCCTTTTTCBCHHHHHHSCTTEEEEECSCGGG-BCHH
T ss_pred             hcccCceeeecCCccchhhhhcCceecCHHHHHhhCCEEEEcCCCChhhccCcCHHHHhhcCCCeEEEecCcccc-ccHH
Confidence            99999953  3677766666678888899999999999999    778999999999999999999999999987 6766


Q ss_pred             cccC
Q psy4626         352 SLRT  355 (542)
Q Consensus       352 ~l~~  355 (542)
                      +|-+
T Consensus       239 aL~~  242 (334)
T 3kb6_A          239 ALYR  242 (334)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6654

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=99.07  E-value=4.7e-10  Score=118.06  Aligned_cols=91  Identities=24%  Similarity=0.354  Sum_probs=78.6

Q ss_pred             cccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceee---C-------------------------
Q psy4626          74 MFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVV---K-------------------------  125 (542)
Q Consensus        74 ~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~---~-------------------------  125 (542)
                      .+.|++|+|+|+|.+|+.+++.|+++|++|+++|+++.++.++...|..++   .                         
T Consensus       169 ~l~g~~V~ViGaG~iG~~aa~~a~~~Ga~V~~~d~~~~~~~~~~~~Ga~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~~  248 (384)
T 1l7d_A          169 TVPPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQA  248 (384)
T ss_dssp             EECCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHTTCEECCC-----------------------CCHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeecccccccccccccchhhcCHHHHhhhH
Confidence            568999999999999999999999999999999999988777766776543   1                         


Q ss_pred             --HHHHhcCCcEEEEcC---C--CcccCCHHHHhccCCCeEEEecc
Q psy4626         126 --LNEVIRTVDIVVTAT---G--NKNVVTREHMDKMKNGCVVCNMG  164 (542)
Q Consensus       126 --l~e~l~~aDvVi~at---G--~~~lI~~e~l~~mk~GailvnvG  164 (542)
                        +.+.++++|+||+|+   |  ++++++.+.++.||+|++++++|
T Consensus       249 ~~l~~~~~~aDvVi~~~~~pg~~~~~li~~~~l~~mk~g~vivdva  294 (384)
T 1l7d_A          249 EAVLKELVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVIIDLA  294 (384)
T ss_dssp             HHHHHHHTTCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEEETT
T ss_pred             HHHHHHhCCCCEEEECCccCCCCCCeeeCHHHHhcCCCCCEEEEEe
Confidence              456678999999998   6  34578889999999999999999

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=99.07  E-value=4.3e-10  Score=119.24  Aligned_cols=90  Identities=26%  Similarity=0.425  Sum_probs=77.7

Q ss_pred             ccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeC----------------------------H
Q psy4626          75 FGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVK----------------------------L  126 (542)
Q Consensus        75 l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~----------------------------l  126 (542)
                      +.|++|+|+|+|.||+.+++.|+++|++|+++|+++.++.++...|...+.                            +
T Consensus       170 l~g~~V~ViGaG~iG~~aa~~a~~~Ga~V~v~D~~~~~~~~~~~lGa~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l  249 (401)
T 1x13_A          170 VPPAKVMVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLELDFKEEAGSGDGYAKVMSDAFIKAEMELF  249 (401)
T ss_dssp             ECCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCGGGHHHHHHTTCEECCC--------CCHHHHHHSHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCCEEEEecccccccccccchhhccHHHHHHHHHHH
Confidence            679999999999999999999999999999999999887776667766442                            4


Q ss_pred             HHHhcCCcEEEEcC---C--CcccCCHHHHhccCCCeEEEecc
Q psy4626         127 NEVIRTVDIVVTAT---G--NKNVVTREHMDKMKNGCVVCNMG  164 (542)
Q Consensus       127 ~e~l~~aDvVi~at---G--~~~lI~~e~l~~mk~GailvnvG  164 (542)
                      .+.+.++|+||+++   |  ++.+++.+.++.||+|++++++|
T Consensus       250 ~e~~~~aDvVI~~~~~pg~~ap~li~~~~l~~mk~g~vIVdva  292 (401)
T 1x13_A          250 AAQAKEVDIIVTTALIPGKPAPKLITREMVDSMKAGSVIVDLA  292 (401)
T ss_dssp             HHHHHHCSEEEECCCCTTSCCCCCBCHHHHHTSCTTCEEEETT
T ss_pred             HHHhCCCCEEEECCccCCCCCCeeeCHHHHhcCCCCcEEEEEc
Confidence            56678899999995   3  34678889999999999999999

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A

Probab=99.06  E-value=3.3e-10  Score=118.24  Aligned_cols=220  Identities=18%  Similarity=0.233  Sum_probs=143.3

Q ss_pred             HHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCCCcc
Q psy4626          90 KGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTE  169 (542)
Q Consensus        90 ~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g~~e  169 (542)
                      ..+.+.|...|.+|++++....          ....+.+.++++|+++.....+.-++++.++.+++-..+...|.|-+.
T Consensus        30 l~~~~~L~~~g~ev~~~~~~~~----------~~~~~~~~~~~ad~li~~~~~~~~~~~~~l~~~p~Lk~i~~~g~G~d~   99 (351)
T 3jtm_A           30 LGIRDWLESQGHQYIVTDDKEG----------PDCELEKHIPDLHVLISTPFHPAYVTAERIKKAKNLKLLLTAGIGSDH   99 (351)
T ss_dssp             GGCHHHHHHTTCEEEEESCCSS----------TTSHHHHHTTTCSEEEECTTSCCCBCHHHHHHCSSCCEEEESSSCCTT
T ss_pred             HHHHHHHHHCCCEEEEeCCCCC----------CHHHHHHHhCCCEEEEEccCCCCCCCHHHHhhCCCCeEEEEeCeeecc
Confidence            4567888899999988752211          001245667899999976544445788999999988999999999888


Q ss_pred             cChHhhcCCCcceeeeccceeeEecCCCCEEEEecCCCcccccCCCChhHHHh------hHHHHHHHHHHHHhcCCCCCC
Q psy4626         170 IDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIVLLAEGRLVNLSCSSLPSFVVS------ITACTQALALIELFNAPSGRY  243 (542)
Q Consensus       170 id~~aL~~~~l~v~~~~~~v~~y~~~dg~~I~LLa~GrLvnl~~~thp~~vmd------~sfa~q~la~~~L~~~~~~~~  243 (542)
                      +|+++..++++.+.....                     .|      ...+-+      ++++.++.......++  ++|
T Consensus       100 id~~~a~~~gI~V~n~~g---------------------~~------~~~vAE~~~~l~L~~~R~~~~~~~~~~~--g~W  150 (351)
T 3jtm_A          100 IDLQAAAAAGLTVAEVTG---------------------SN------VVSVAEDELMRILILMRNFVPGYNQVVK--GEW  150 (351)
T ss_dssp             BCHHHHHHTTCEEEECTT---------------------TT------HHHHHHHHHHHHHHHHHTHHHHHHHHHT--TCC
T ss_pred             cCHHHHHhcCeeEEECCC---------------------cC------chHHHHHHHHHHHHHhhCcHHHHHHHHc--CCC
Confidence            999988765554443211                     01      111111      2222222222222232  467


Q ss_pred             CCccccCChhhHHHHHHhcCCcccc----ccccccHHHHhhcCCCC--CCCC--CCCccccCCeeee-ehhhhcccCcEE
Q psy4626         244 KSDVYLLPKKMDEYVASLHLPTFDA----HLTELSDEQAKYMGLNK--AGPF--KPSYYSMDGFSVV-KLNEVIRTVDIV  314 (542)
Q Consensus       244 ~~gv~~lp~~~d~~VA~l~L~~lg~----~i~~lt~~~a~~lg~~e--~~p~--~a~ea~mdG~~v~-~~~~a~~~~d~~  314 (542)
                      ...-...+      --++..+++|+    .|++..+++++++|+..  .||.  +.-.+...|++.. +++|+++++|||
T Consensus       151 ~~~~~~~~------~~~l~gktvGIIG~G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvV  224 (351)
T 3jtm_A          151 NVAGIAYR------AYDLEGKTIGTVGAGRIGKLLLQRLKPFGCNLLYHDRLQMAPELEKETGAKFVEDLNEMLPKCDVI  224 (351)
T ss_dssp             CHHHHHTT------CCCSTTCEEEEECCSHHHHHHHHHHGGGCCEEEEECSSCCCHHHHHHHCCEECSCHHHHGGGCSEE
T ss_pred             ccccccCC------cccccCCEEeEEEeCHHHHHHHHHHHHCCCEEEEeCCCccCHHHHHhCCCeEcCCHHHHHhcCCEE
Confidence            53210000      01345567776    89999999999999942  2333  2223333466655 899999999999


Q ss_pred             EE----ccCCCCccCHhHHhcCCCCcEEEccCCCCcccccccccC
Q psy4626         315 VT----ATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRT  355 (542)
Q Consensus       315 ~t----~tg~~~vi~~~~~~~mk~gail~n~gh~~~Ei~~~~l~~  355 (542)
                      ++    +..++++|+.+.|+.||+|++|+|+|++.. +|-++|.+
T Consensus       225 ~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~-vde~aL~~  268 (351)
T 3jtm_A          225 VINMPLTEKTRGMFNKELIGKLKKGVLIVNNARGAI-MERQAVVD  268 (351)
T ss_dssp             EECSCCCTTTTTCBSHHHHHHSCTTEEEEECSCGGG-BCHHHHHH
T ss_pred             EECCCCCHHHHHhhcHHHHhcCCCCCEEEECcCchh-hCHHHHHH
Confidence            99    346889999999999999999999999887 45555543

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=99.02  E-value=8.5e-10  Score=116.03  Aligned_cols=91  Identities=25%  Similarity=0.328  Sum_probs=78.3

Q ss_pred             ccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeC--------------------------HHH
Q psy4626          75 FGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVK--------------------------LNE  128 (542)
Q Consensus        75 l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~--------------------------l~e  128 (542)
                      +++++|+|+|+|.+|+.+++.|+++|++|+++|+++.++.++...|..+.+                          +.+
T Consensus       182 v~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~lGa~~~~l~~~~~~~~gya~~~~~~~~~~~~~~l~e  261 (381)
T 3p2y_A          182 VKPASALVLGVGVAGLQALATAKRLGAKTTGYDVRPEVAEQVRSVGAQWLDLGIDAAGEGGYARELSEAERAQQQQALED  261 (381)
T ss_dssp             ECCCEEEEESCSHHHHHHHHHHHHHTCEEEEECSSGGGHHHHHHTTCEECCCC-------------CHHHHHHHHHHHHH
T ss_pred             cCCCEEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeccccccccccchhhhhHHHHhhhHHHHHH
Confidence            578999999999999999999999999999999999988777766765432                          346


Q ss_pred             HhcCCcEEEEcC---C--CcccCCHHHHhccCCCeEEEeccC
Q psy4626         129 VIRTVDIVVTAT---G--NKNVVTREHMDKMKNGCVVCNMGH  165 (542)
Q Consensus       129 ~l~~aDvVi~at---G--~~~lI~~e~l~~mk~GailvnvG~  165 (542)
                      +++++|+||.+.   |  .+.+++++.++.||+|+++++++.
T Consensus       262 ~l~~aDIVI~tv~iPg~~ap~Lvt~emv~~MkpGsVIVDvA~  303 (381)
T 3p2y_A          262 AITKFDIVITTALVPGRPAPRLVTAAAATGMQPGSVVVDLAG  303 (381)
T ss_dssp             HHTTCSEEEECCCCTTSCCCCCBCHHHHHTSCTTCEEEETTG
T ss_pred             HHhcCCEEEECCCCCCcccceeecHHHHhcCCCCcEEEEEeC
Confidence            779999999974   3  446789999999999999999984

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=99.00  E-value=1e-09  Score=116.26  Aligned_cols=92  Identities=29%  Similarity=0.450  Sum_probs=78.0

Q ss_pred             cccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceee-----------------------------
Q psy4626          74 MFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVV-----------------------------  124 (542)
Q Consensus        74 ~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~-----------------------------  124 (542)
                      .+++.+|+|+|+|++|+.+++.|+++|++|+++|+++.++..+...|..++                             
T Consensus       187 ~v~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~~G~~~~~~~~~~~~d~~~~~~ya~e~s~~~~~~~~  266 (405)
T 4dio_A          187 TVPAAKIFVMGAGVAGLQAIATARRLGAVVSATDVRPAAKEQVASLGAKFIAVEDEEFKAAETAGGYAKEMSGEYQVKQA  266 (405)
T ss_dssp             EECCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSTTHHHHHHHTTCEECCCCC-----------------CHHHHHHH
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCCceeecccccccccccccchhhhcchhhhhhhH
Confidence            357899999999999999999999999999999999988776666665422                             


Q ss_pred             -CHHHHhcCCcEEEEcC---C--CcccCCHHHHhccCCCeEEEeccC
Q psy4626         125 -KLNEVIRTVDIVVTAT---G--NKNVVTREHMDKMKNGCVVCNMGH  165 (542)
Q Consensus       125 -~l~e~l~~aDvVi~at---G--~~~lI~~e~l~~mk~GailvnvG~  165 (542)
                       ++.++++++|+||+|.   |  .+.+++++.++.||+|+++++++.
T Consensus       267 ~~l~e~l~~aDVVI~tvlipg~~ap~Lvt~emv~~Mk~GsVIVDvA~  313 (405)
T 4dio_A          267 ALVAEHIAKQDIVITTALIPGRPAPRLVTREMLDSMKPGSVVVDLAV  313 (405)
T ss_dssp             HHHHHHHHTCSEEEECCCCSSSCCCCCBCHHHHTTSCTTCEEEETTG
T ss_pred             hHHHHHhcCCCEEEECCcCCCCCCCEEecHHHHhcCCCCCEEEEEeC
Confidence             3456678999999984   3  556889999999999999999983

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=98.93  E-value=1.9e-09  Score=113.21  Aligned_cols=92  Identities=20%  Similarity=0.259  Sum_probs=76.2

Q ss_pred             cccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhc-CCcee-------eCHHHHhcCCcEEEEcCCC---
Q psy4626          74 MFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACM-DGFSV-------VKLNEVIRTVDIVVTATGN---  142 (542)
Q Consensus        74 ~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~-~G~~v-------~~l~e~l~~aDvVi~atG~---  142 (542)
                      .+.|++|+|+|+|.||+.+++.++++|++|+++|+++.++..+.. .|..+       .++++.++++|+||+|++.   
T Consensus       165 ~l~g~~V~ViG~G~iG~~~a~~a~~~Ga~V~~~d~~~~~l~~~~~~~g~~~~~~~~~~~~l~~~l~~aDvVi~~~~~p~~  244 (377)
T 2vhw_A          165 GVEPADVVVIGAGTAGYNAARIANGMGATVTVLDINIDKLRQLDAEFCGRIHTRYSSAYELEGAVKRADLVIGAVLVPGA  244 (377)
T ss_dssp             TBCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTTSSEEEECCHHHHHHHHHHCSEEEECCCCTTS
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhcCCeeEeccCCHHHHHHHHcCCCEEEECCCcCCC
Confidence            478999999999999999999999999999999999987665543 45431       2355677899999998753   


Q ss_pred             --cccCCHHHHhccCCCeEEEeccC
Q psy4626         143 --KNVVTREHMDKMKNGCVVCNMGH  165 (542)
Q Consensus       143 --~~lI~~e~l~~mk~GailvnvG~  165 (542)
                        +++++.+.++.||+|++++|+|.
T Consensus       245 ~t~~li~~~~l~~mk~g~~iV~va~  269 (377)
T 2vhw_A          245 KAPKLVSNSLVAHMKPGAVLVDIAI  269 (377)
T ss_dssp             CCCCCBCHHHHTTSCTTCEEEEGGG
T ss_pred             CCcceecHHHHhcCCCCcEEEEEec
Confidence              35677889999999999999993

>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A*

Probab=98.88  E-value=9.8e-09  Score=107.13  Aligned_cols=109  Identities=18%  Similarity=0.271  Sum_probs=85.9

Q ss_pred             HHHHHHHHHHHHHhhcCc-cccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHHHHhc-CC
Q psy4626          56 LYMCRESIIDSLKRSTDV-MFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIR-TV  133 (542)
Q Consensus        56 ~~g~~~s~~~ai~r~~~~-~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~-~a  133 (542)
                      .||+-.++-.++... +. .+.||+|+|+|+|+||+.+|+.|+++|++|+++|+++.+...+...|.+.++.++++. .+
T Consensus       154 g~Gv~~~~~~~~~~~-G~~~L~GktV~I~G~GnVG~~~A~~l~~~GakVvvsD~~~~~~~~a~~~ga~~v~~~ell~~~~  232 (355)
T 1c1d_A          154 AVGVFEAMKATVAHR-GLGSLDGLTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTERVAHAVALGHTAVALEDVLSTPC  232 (355)
T ss_dssp             HHHHHHHHHHHHHHT-TCCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECCGGGGGGCCC
T ss_pred             HHHHHHHHHHHHHhc-CCCCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEEeCCccHHHHHHhcCCEEeChHHhhcCcc
Confidence            334443333344333 55 6899999999999999999999999999999999998764334456777778888876 89


Q ss_pred             cEEEEcCCCcccCCHHHHhccCCCeEEEeccCCC
Q psy4626         134 DIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSN  167 (542)
Q Consensus       134 DvVi~atG~~~lI~~e~l~~mk~GailvnvG~g~  167 (542)
                      |+++-|. +.+.|+.+.++.|| ..+++|.++++
T Consensus       233 DIliP~A-~~~~I~~~~~~~lk-~~iVie~AN~p  264 (355)
T 1c1d_A          233 DVFAPCA-MGGVITTEVARTLD-CSVVAGAANNV  264 (355)
T ss_dssp             SEEEECS-CSCCBCHHHHHHCC-CSEECCSCTTC
T ss_pred             ceecHhH-HHhhcCHHHHhhCC-CCEEEECCCCC
Confidence            9999864 67799999999997 67899999875

>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP}

Probab=98.81  E-value=1.4e-08  Score=105.76  Aligned_cols=189  Identities=15%  Similarity=0.209  Sum_probs=122.7

Q ss_pred             HHhcCCcEEEEcCCCcccCCHHHHhcc-CCCeEEEeccCCCcccChHhhcCCCcceeeeccceeeEecCCCCEEEEecCC
Q psy4626         128 EVIRTVDIVVTATGNKNVVTREHMDKM-KNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIVLLAEG  206 (542)
Q Consensus       128 e~l~~aDvVi~atG~~~lI~~e~l~~m-k~GailvnvG~g~~eid~~aL~~~~l~v~~~~~~v~~y~~~dg~~I~LLa~G  206 (542)
                      +.++++|+++....+  -++++.++.+ ++-..|...|.|-+.+|++++.++++.+.....                   
T Consensus        67 ~~~~~~d~li~~~~~--~i~~~~l~~~~~~Lk~I~~~~~G~D~id~~~a~~~gI~V~n~pg-------------------  125 (345)
T 4g2n_A           67 SRAHGAEVLFVTATE--AITAEVIRKLQPGLKTIATLSVGYDHIDMAAARSLGIKVLHTPD-------------------  125 (345)
T ss_dssp             HHTTTCSEEEECTTS--CBCHHHHHHTTTTCCEEEESSSCCTTBCHHHHHHTTCEEECCCS-------------------
T ss_pred             HHhcCCeEEEEeCCC--CCCHHHHHhhcCCceEEEEcCCcccccCHHHHHhCCEEEEECCc-------------------
Confidence            456899999875322  4778899988 566677788888788999988766554443211                   


Q ss_pred             CcccccCCCChhHHHh------hHHHHHHHHHHHHhcCCCCCCCCccc-cCChhhHHHHHHhcCCcccc----ccccccH
Q psy4626         207 RLVNLSCSSLPSFVVS------ITACTQALALIELFNAPSGRYKSDVY-LLPKKMDEYVASLHLPTFDA----HLTELSD  275 (542)
Q Consensus       207 rLvnl~~~thp~~vmd------~sfa~q~la~~~L~~~~~~~~~~gv~-~lp~~~d~~VA~l~L~~lg~----~i~~lt~  275 (542)
                             . +...+-+      ++++.++.......+.  ++|...-. ..+.      .++..+++|+    .|++-.+
T Consensus       126 -------~-~~~~vAE~a~~l~L~~~R~~~~~~~~~r~--g~W~~~~~~~~~g------~~l~gktvGIIGlG~IG~~vA  189 (345)
T 4g2n_A          126 -------V-LSDACAEIAMLLVLNACRRGYEADRMVRS--GSWPGWGPTQLLG------MGLTGRRLGIFGMGRIGRAIA  189 (345)
T ss_dssp             -------C-CHHHHHHHHHHHHHHHHHTHHHHHHHHHT--TCCCCCCTTTTCB------CCCTTCEEEEESCSHHHHHHH
T ss_pred             -------c-cchHHHHHHHHHHHHHHhCHHHHHHHHHc--CCCcccCcccccc------cccCCCEEEEEEeChhHHHHH
Confidence                   0 1111111      2222222222223333  46653110 0000      1345567777    8999999


Q ss_pred             HHHhhcCCCC--CCCCCCCccccCCeeee-ehhhhcccCcEEEEcc----CCCCccCHhHHhcCCCCcEEEccCCCCccc
Q psy4626         276 EQAKYMGLNK--AGPFKPSYYSMDGFSVV-KLNEVIRTVDIVVTAT----GNKNVVTREHMDKMKNGCVVCNMGHSNTEI  348 (542)
Q Consensus       276 ~~a~~lg~~e--~~p~~a~ea~mdG~~v~-~~~~a~~~~d~~~t~t----g~~~vi~~~~~~~mk~gail~n~gh~~~Ei  348 (542)
                      ++++++|+..  .||...-.....|++.. +++|+++++|||++.+    .++++|+.+.|+.||+|++++|+|++.+ +
T Consensus       190 ~~l~~~G~~V~~~dr~~~~~~~~~g~~~~~~l~ell~~sDvV~l~~Plt~~T~~li~~~~l~~mk~gailIN~aRG~~-v  268 (345)
T 4g2n_A          190 TRARGFGLAIHYHNRTRLSHALEEGAIYHDTLDSLLGASDIFLIAAPGRPELKGFLDHDRIAKIPEGAVVINISRGDL-I  268 (345)
T ss_dssp             HHHHTTTCEEEEECSSCCCHHHHTTCEECSSHHHHHHTCSEEEECSCCCGGGTTCBCHHHHHHSCTTEEEEECSCGGG-B
T ss_pred             HHHHHCCCEEEEECCCCcchhhhcCCeEeCCHHHHHhhCCEEEEecCCCHHHHHHhCHHHHhhCCCCcEEEECCCCch-h
Confidence            9999999942  35543222222387776 8999999999999944    3789999999999999999999999987 3


Q ss_pred             cccccc
Q psy4626         349 DVNSLR  354 (542)
Q Consensus       349 ~~~~l~  354 (542)
                      |-++|.
T Consensus       269 de~aL~  274 (345)
T 4g2n_A          269 NDDALI  274 (345)
T ss_dssp             CHHHHH
T ss_pred             CHHHHH
Confidence            544444

>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A*

Probab=98.80  E-value=1.9e-08  Score=104.06  Aligned_cols=188  Identities=12%  Similarity=0.098  Sum_probs=122.5

Q ss_pred             HHhcCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCCCcccChHhhcCCCcceeeeccceeeEecCCCCEEEEecCCC
Q psy4626         128 EVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIVLLAEGR  207 (542)
Q Consensus       128 e~l~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g~~eid~~aL~~~~l~v~~~~~~v~~y~~~dg~~I~LLa~Gr  207 (542)
                      +.++++|+++....+  -++++.++.+++-..+...|.|-+.+|++++.++++.+.....                    
T Consensus        41 ~~~~~~d~~i~~~~~--~i~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~~--------------------   98 (330)
T 4e5n_A           41 RRCRDAQAMMAFMPD--RVDADFLQACPELRVIGCALKGFDNFDVDACTARGVWLTFVPD--------------------   98 (330)
T ss_dssp             HHHTTCSEEEECTTC--CBCHHHHHHCTTCCEEEESSSCCTTBCHHHHHHTTCEEECCSS--------------------
T ss_pred             HHhCCCeEEEEeCCC--CCCHHHHhhCCCCcEEEECCCcccccCHHHHHhcCcEEEeCCC--------------------
Confidence            456899999874323  5778899999888889999999888999988765554432210                    


Q ss_pred             cccccCCCChhHHHhh------HHHHHHHHHHHHhcCCCCCCCCcc-ccCChhhHHHHHHhcCCcccc----ccccccHH
Q psy4626         208 LVNLSCSSLPSFVVSI------TACTQALALIELFNAPSGRYKSDV-YLLPKKMDEYVASLHLPTFDA----HLTELSDE  276 (542)
Q Consensus       208 Lvnl~~~thp~~vmd~------sfa~q~la~~~L~~~~~~~~~~gv-~~lp~~~d~~VA~l~L~~lg~----~i~~lt~~  276 (542)
                             .++..+-+.      +++.++.......++  ++|..-- .....       ++..+++|+    .|++..++
T Consensus        99 -------~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~--g~w~~~~~~~~~~-------~l~g~tvGIIG~G~IG~~vA~  162 (330)
T 4e5n_A           99 -------LLTVPTAELAIGLAVGLGRHLRAADAFVRS--GKFRGWQPRFYGT-------GLDNATVGFLGMGAIGLAMAD  162 (330)
T ss_dssp             -------TTHHHHHHHHHHHHHHHHTTHHHHHHHHHT--TCCCSCCSCCCCC-------CSTTCEEEEECCSHHHHHHHH
T ss_pred             -------CCchHHHHHHHHHHHHHHhChHHHHHHHHh--CCccccCccccCC-------ccCCCEEEEEeeCHHHHHHHH
Confidence                   011111111      122222111122232  3454100 11111       245566766    88888899


Q ss_pred             HHhhcCCC--CCCCCC--CCccccCCeeeeehhhhcccCcEEEEc----cCCCCccCHhHHhcCCCCcEEEccCCCCccc
Q psy4626         277 QAKYMGLN--KAGPFK--PSYYSMDGFSVVKLNEVIRTVDIVVTA----TGNKNVVTREHMDKMKNGCVVCNMGHSNTEI  348 (542)
Q Consensus       277 ~a~~lg~~--e~~p~~--a~ea~mdG~~v~~~~~a~~~~d~~~t~----tg~~~vi~~~~~~~mk~gail~n~gh~~~Ei  348 (542)
                      +++++|+.  -.||..  ...+.-.|++..+++|+++++|+|+++    ..++++|+.+.|+.||+|++++|+|++.. +
T Consensus       163 ~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~arg~~-v  241 (330)
T 4e5n_A          163 RLQGWGATLQYHEAKALDTQTEQRLGLRQVACSELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGSV-V  241 (330)
T ss_dssp             HTTTSCCEEEEECSSCCCHHHHHHHTEEECCHHHHHHHCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCGGG-B
T ss_pred             HHHHCCCEEEEECCCCCcHhHHHhcCceeCCHHHHHhhCCEEEEcCCCCHHHHHHhCHHHHhhCCCCcEEEECCCCch-h
Confidence            99999984  234443  223334588778999999999999994    36889999999999999999999999876 4


Q ss_pred             cccccc
Q psy4626         349 DVNSLR  354 (542)
Q Consensus       349 ~~~~l~  354 (542)
                      |-++|.
T Consensus       242 d~~aL~  247 (330)
T 4e5n_A          242 DEAAVL  247 (330)
T ss_dssp             CHHHHH
T ss_pred             CHHHHH
Confidence            544444

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=98.78  E-value=1.3e-08  Score=106.52  Aligned_cols=93  Identities=22%  Similarity=0.311  Sum_probs=74.3

Q ss_pred             cccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhc-CCcee-------eCHHHHhcCCcEEEEcCCCc--
Q psy4626          74 MFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACM-DGFSV-------VKLNEVIRTVDIVVTATGNK--  143 (542)
Q Consensus        74 ~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~-~G~~v-------~~l~e~l~~aDvVi~atG~~--  143 (542)
                      .+.|++|+|+|+|.||+.+++.|+++|++|+++|+++.+...+.. .|..+       .+++++++++|+||+|+|..  
T Consensus       163 ~l~~~~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~~~~~DvVi~~~g~~~~  242 (369)
T 2eez_A          163 GVAPASVVILGGGTVGTNAAKIALGMGAQVTILDVNHKRLQYLDDVFGGRVITLTATEANIKKSVQHADLLIGAVLVPGA  242 (369)
T ss_dssp             BBCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTTSEEEEECCHHHHHHHHHHCSEEEECCC----
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHhcCceEEEecCCHHHHHHHHhCCCEEEECCCCCcc
Confidence            377899999999999999999999999999999999987665443 44432       13456678999999998743  


Q ss_pred             ---ccCCHHHHhccCCCeEEEeccCC
Q psy4626         144 ---NVVTREHMDKMKNGCVVCNMGHS  166 (542)
Q Consensus       144 ---~lI~~e~l~~mk~GailvnvG~g  166 (542)
                         .++..+.++.||+|++++|+|..
T Consensus       243 ~~~~li~~~~l~~mk~gg~iV~v~~~  268 (369)
T 2eez_A          243 KAPKLVTRDMLSLMKEGAVIVDVAVD  268 (369)
T ss_dssp             ---CCSCHHHHTTSCTTCEEEECC--
T ss_pred             ccchhHHHHHHHhhcCCCEEEEEecC
Confidence               45678899999999999999954

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}

Probab=98.78  E-value=8.8e-08  Score=101.89  Aligned_cols=223  Identities=14%  Similarity=0.180  Sum_probs=134.7

Q ss_pred             EEEEEcCChhHHHHHHHHHhCCC-EEEEEeCCchhhhhhhcCCceeeCHHHHhcCCcEEEEcCCCcccCCHHHHhccCCC
Q psy4626          79 QVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHMDKMKNG  157 (542)
Q Consensus        79 tVvViG~G~IG~~vA~~l~~~Ga-~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~aDvVi~atG~~~lI~~e~l~~mk~G  157 (542)
                      +|++.  .++.......++..|. .|...+...           ....+.+.++++|+++..+.+  .++++.|+.+++-
T Consensus        17 kIl~~--~~i~~~~~~~l~~~g~~~v~~~~~~~-----------~~~~l~~~~~~~d~l~v~~~~--~i~~~~l~~~p~L   81 (416)
T 3k5p_A           17 NVLLL--EGISQTAVEYFKSSGYTNVTHLPKAL-----------DKADLIKAISSAHIIGIRSRT--QLTEEIFAAANRL   81 (416)
T ss_dssp             CEEEC--SCCCHHHHHHHHHTTCCCEEECSSCC-----------CHHHHHHHHTTCSEEEECSSC--CBCHHHHHHCTTC
T ss_pred             EEEEE--CCCCHHHHHHHHHCCCcEEEECCCCC-----------CHHHHHHHccCCEEEEEcCCC--CCCHHHHHhCCCc
Confidence            34443  3444444556666776 554432110           001123456899998765323  5788899999888


Q ss_pred             eEEEeccCCCcccChHhhcCCCcceeeeccceeeEecCCCCEEEEecCCCcccccCCCChhHHHhhHHHH------HHHH
Q psy4626         158 CVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIVLLAEGRLVNLSCSSLPSFVVSITACT------QALA  231 (542)
Q Consensus       158 ailvnvG~g~~eid~~aL~~~~l~v~~~~~~v~~y~~~dg~~I~LLa~GrLvnl~~~thp~~vmd~sfa~------q~la  231 (542)
                      ..+...|.|-+.+|+++..++++.+.....                     .      ++..+-+..++.      ++..
T Consensus        82 k~I~~~~~G~d~IDl~~a~~~GI~V~n~p~---------------------~------n~~aVAE~~l~l~L~l~R~i~~  134 (416)
T 3k5p_A           82 IAVGCFSVGTNQVELKAARKRGIPVFNAPF---------------------S------NTRSVAELVIGEIIMLMRRIFP  134 (416)
T ss_dssp             CEEEECSSCCTTBCHHHHHHTTCCEECCSS---------------------T------THHHHHHHHHHHHHHHHTTHHH
T ss_pred             EEEEECccccCccCHHHHHhcCcEEEeCCC---------------------c------ccHHHHHHHHHHHHHHhcccHH
Confidence            888898999889999988866655543211                     0      111111111111      1111


Q ss_pred             HHHHhcCCCCCCCCccccCChhhHHHHHHhcCCcccc----ccccccHHHHhhcCCCC--CCCCCCCccccCCeeeeehh
Q psy4626         232 LIELFNAPSGRYKSDVYLLPKKMDEYVASLHLPTFDA----HLTELSDEQAKYMGLNK--AGPFKPSYYSMDGFSVVKLN  305 (542)
Q Consensus       232 ~~~L~~~~~~~~~~gv~~lp~~~d~~VA~l~L~~lg~----~i~~lt~~~a~~lg~~e--~~p~~a~ea~mdG~~v~~~~  305 (542)
                      .......  ++|...-.. ..       ++..+++|+    .|++..+++++++|+..  .||...... -....+.+++
T Consensus       135 ~~~~~~~--g~W~~~~~~-~~-------el~gktvGIIGlG~IG~~vA~~l~~~G~~V~~yd~~~~~~~-~~~~~~~sl~  203 (416)
T 3k5p_A          135 RSVSAHA--GGWEKTAIG-SR-------EVRGKTLGIVGYGNIGSQVGNLAESLGMTVRYYDTSDKLQY-GNVKPAASLD  203 (416)
T ss_dssp             HHHHHHT--TCCCCCCTT-CC-------CSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCCCCB-TTBEECSSHH
T ss_pred             HHHhhhc--ccccccCCC-Cc-------cCCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEECCcchhcc-cCcEecCCHH
Confidence            1112222  567653211 11       345677777    89999999999999942  244433222 1224556899


Q ss_pred             hhcccCcEEEE----ccCCCCccCHhHHhcCCCCcEEEccCCCCcccccccccC
Q psy4626         306 EVIRTVDIVVT----ATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRT  355 (542)
Q Consensus       306 ~a~~~~d~~~t----~tg~~~vi~~~~~~~mk~gail~n~gh~~~Ei~~~~l~~  355 (542)
                      |++++||+|++    +..++++|+.+.|+.||+|++++|++++.+ +|-++|.+
T Consensus       204 ell~~aDvV~lhvPlt~~T~~li~~~~l~~mk~gailIN~aRG~v-vd~~aL~~  256 (416)
T 3k5p_A          204 ELLKTSDVVSLHVPSSKSTSKLITEAKLRKMKKGAFLINNARGSD-VDLEALAK  256 (416)
T ss_dssp             HHHHHCSEEEECCCC-----CCBCHHHHHHSCTTEEEEECSCTTS-BCHHHHHH
T ss_pred             HHHhhCCEEEEeCCCCHHHhhhcCHHHHhhCCCCcEEEECCCChh-hhHHHHHH
Confidence            99999999999    445789999999999999999999999987 45555543

>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp}

Probab=98.73  E-value=3.7e-08  Score=103.66  Aligned_cols=171  Identities=13%  Similarity=0.162  Sum_probs=116.6

Q ss_pred             HHhcCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCCCcccChHhhcCCCcceeeeccceeeEecCCCCEEEEecCCC
Q psy4626         128 EVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIVLLAEGR  207 (542)
Q Consensus       128 e~l~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g~~eid~~aL~~~~l~v~~~~~~v~~y~~~dg~~I~LLa~Gr  207 (542)
                      +.++++|+++....+  -++++.++ .++-..+...|.|-+.+|++++.++++.+....                     
T Consensus        36 ~~l~~ad~li~~~~~--~v~~~ll~-~~~Lk~I~~~~~G~D~iD~~~~~~~gI~v~n~p---------------------   91 (381)
T 3oet_A           36 EELNHADALMVRSVT--KVNESLLS-GTPINFVGTATAGTDHVDEAWLKQAGIGFSAAP---------------------   91 (381)
T ss_dssp             HHHTTCSEEEECTTS--CBSHHHHT-TSCCCEEEESSSCCTTBCHHHHHHTTCEEECCT---------------------
T ss_pred             HHHCCCEEEEECCCC--CCCHHHHc-CCCCEEEEEccccccccCHHHHHhCCEEEEECC---------------------
Confidence            447899999875433  46777888 455777888888888899998876544333221                     


Q ss_pred             cccccCCCChhHHHhhHHHHHHHHHH-HHhcCCCCCCCCccccCChhhHHHHHHhcCCcccc----ccccccHHHHhhcC
Q psy4626         208 LVNLSCSSLPSFVVSITACTQALALI-ELFNAPSGRYKSDVYLLPKKMDEYVASLHLPTFDA----HLTELSDEQAKYMG  282 (542)
Q Consensus       208 Lvnl~~~thp~~vmd~sfa~q~la~~-~L~~~~~~~~~~gv~~lp~~~d~~VA~l~L~~lg~----~i~~lt~~~a~~lg  282 (542)
                           . .+     ..+.|..+++.+ .+.++    ...              ++..+++|+    .|++-.+++++++|
T Consensus        92 -----g-~~-----~~~VAE~~l~~lL~l~r~----~g~--------------~l~gktvGIIGlG~IG~~vA~~l~a~G  142 (381)
T 3oet_A           92 -----G-CN-----AIAVVEYVFSALLMLAER----DGF--------------SLRDRTIGIVGVGNVGSRLQTRLEALG  142 (381)
T ss_dssp             -----T-TT-----HHHHHHHHHHHHHHHHHH----TTC--------------CGGGCEEEEECCSHHHHHHHHHHHHTT
T ss_pred             -----C-cC-----cchhHHHHHHHHHHHHHh----cCC--------------ccCCCEEEEEeECHHHHHHHHHHHHCC
Confidence                 0 01     123344444433 22221    111              345567776    89999999999999


Q ss_pred             CC--CCCCCCCCccccCCeeeeehhhhcccCcEEEEccC--------CCCccCHhHHhcCCCCcEEEccCCCCccccccc
Q psy4626         283 LN--KAGPFKPSYYSMDGFSVVKLNEVIRTVDIVVTATG--------NKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNS  352 (542)
Q Consensus       283 ~~--e~~p~~a~ea~mdG~~v~~~~~a~~~~d~~~t~tg--------~~~vi~~~~~~~mk~gail~n~gh~~~Ei~~~~  352 (542)
                      +.  -.||.+..+.  ++....+++|++++||||++.+-        ++++|+.+.|+.||+|++|+|+|++.+ ||-++
T Consensus       143 ~~V~~~d~~~~~~~--~~~~~~sl~ell~~aDiV~l~~Plt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~v-vde~a  219 (381)
T 3oet_A          143 IRTLLCDPPRAARG--DEGDFRTLDELVQEADVLTFHTPLYKDGPYKTLHLADETLIRRLKPGAILINACRGPV-VDNAA  219 (381)
T ss_dssp             CEEEEECHHHHHTT--CCSCBCCHHHHHHHCSEEEECCCCCCSSTTCCTTSBCHHHHHHSCTTEEEEECSCGGG-BCHHH
T ss_pred             CEEEEECCChHHhc--cCcccCCHHHHHhhCCEEEEcCcCCccccccchhhcCHHHHhcCCCCcEEEECCCCcc-cCHHH
Confidence            84  3356443222  56667799999999999999542        889999999999999999999999987 45444


Q ss_pred             cc
Q psy4626         353 LR  354 (542)
Q Consensus       353 l~  354 (542)
                      |.
T Consensus       220 L~  221 (381)
T 3oet_A          220 LL  221 (381)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=98.71  E-value=5.2e-08  Score=100.30  Aligned_cols=121  Identities=12%  Similarity=0.127  Sum_probs=92.8

Q ss_pred             HHHHHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCcee-eC-HHHHhcCCcEEEE
Q psy4626          61 ESIIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV-VK-LNEVIRTVDIVVT  138 (542)
Q Consensus        61 ~s~~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v-~~-l~e~l~~aDvVi~  138 (542)
                      ...|+++.+.  ...+|++|+|+|.|.||+.+++.++.+|++|++++.++.+...+...|++. +. .+...+++|++++
T Consensus       163 ~ta~~~l~~~--~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~D~vid  240 (348)
T 3two_A          163 ITTYSPLKFS--KVTKGTKVGVAGFGGLGSMAVKYAVAMGAEVSVFARNEHKKQDALSMGVKHFYTDPKQCKEELDFIIS  240 (348)
T ss_dssp             HHHHHHHHHT--TCCTTCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSTTHHHHHHTTCSEEESSGGGCCSCEEEEEE
T ss_pred             HHHHHHHHhc--CCCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHhcCCCeecCCHHHHhcCCCEEEE
Confidence            4456777665  346899999999999999999999999999999999999988888888763 22 2222348999999


Q ss_pred             cCCCcccCCHHHHhccCCCeEEEeccCCC-cc---cChHhhc-CCCcceee
Q psy4626         139 ATGNKNVVTREHMDKMKNGCVVCNMGHSN-TE---IDVNSLR-TPDLTWEK  184 (542)
Q Consensus       139 atG~~~lI~~e~l~~mk~GailvnvG~g~-~e---id~~aL~-~~~l~v~~  184 (542)
                      ++|....+ .+.++.+++++.++.+|... ..   ++...+. .+++++.+
T Consensus       241 ~~g~~~~~-~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~~i~g  290 (348)
T 3two_A          241 TIPTHYDL-KDYLKLLTYNGDLALVGLPPVEVAPVLSVFDFIHLGNRKVYG  290 (348)
T ss_dssp             CCCSCCCH-HHHHTTEEEEEEEEECCCCCGGGCCEEEHHHHHHTCSCEEEE
T ss_pred             CCCcHHHH-HHHHHHHhcCCEEEEECCCCCCCcccCCHHHHHhhCCeEEEE
Confidence            99987666 47899999999999998765 32   4444444 45555444

>2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A*

Probab=98.71  E-value=6.9e-08  Score=100.36  Aligned_cols=225  Identities=13%  Similarity=0.096  Sum_probs=135.1

Q ss_pred             EEEEEcCChhHHHHHHH-HHhCCCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCCcEEEEcCCCcccCCHH-HHhccCC
Q psy4626          79 QVVLCGYGEVGKGCCQS-LKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNKNVVTRE-HMDKMKN  156 (542)
Q Consensus        79 tVvViG~G~IG~~vA~~-l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~aDvVi~atG~~~lI~~e-~l~~mk~  156 (542)
                      +++|++.-..-...... ++.+|.+|..++... .           ....+.++++|+++....+  -++++ .++.++.
T Consensus         3 ki~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~-----------~~~~~~~~~~d~li~~~~~--~~~~~~~l~~~~~   68 (343)
T 2yq5_A            3 KIAMYNVSPIEVPYIEDWAKKNDVEIKTTDQAL-T-----------SATVDLAEGCSSVSLKPLG--PVDEEVVYQKLSE   68 (343)
T ss_dssp             EEEEESCCGGGHHHHHHHHHHHTCEEEEESSCC-S-----------TTGGGGGTTCSEEEECCSS--CBCCHHHHHHHHH
T ss_pred             eEEEEecCcccHHHHHHHHHhCCeEEEECCCCC-C-----------HHHHHHhcCCcEEEEcCCC--CcCHHHHHHhccc
Confidence            56777765655444433 345677776664211 0           0123456899999875322  46678 8888853


Q ss_pred             --CeEEEeccCCCcccChHhhcCCCcceeeeccceeeEecCCCCEEEEecCCCcccccCCCChhHHHhhHHHH------H
Q psy4626         157 --GCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIVLLAEGRLVNLSCSSLPSFVVSITACT------Q  228 (542)
Q Consensus       157 --GailvnvG~g~~eid~~aL~~~~l~v~~~~~~v~~y~~~dg~~I~LLa~GrLvnl~~~thp~~vmd~sfa~------q  228 (542)
                        -..+...|.|-+.+|++++.++++.+..+..                           .++..+-+..++.      +
T Consensus        69 ~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~p~---------------------------~~~~~vAE~~~~l~L~~~R~  121 (343)
T 2yq5_A           69 YGVKCIGLRIVGFNTINFDWTKKYNLLVTNVPV---------------------------YSPRAIAEMTVTQAMYLLRK  121 (343)
T ss_dssp             TTCCEEEESSSCCTTBCSSTTCC--CEEECCSC---------------------------SCHHHHHHHHHHHHHHHHHT
T ss_pred             cCceEEEECceeecccchhHHHhCCEEEEECCC---------------------------CCcHHHHHHHHHHHHHHHhc
Confidence              3567788888788898888765544432210                           0111111222221      1


Q ss_pred             HHHHHHHhc-CCCCCCCCccccCChhhHHHHHHhcCCcccc----ccccccHHHHhhcCCCC--CCCCCCCccccCCeee
Q psy4626         229 ALALIELFN-APSGRYKSDVYLLPKKMDEYVASLHLPTFDA----HLTELSDEQAKYMGLNK--AGPFKPSYYSMDGFSV  301 (542)
Q Consensus       229 ~la~~~L~~-~~~~~~~~gv~~lp~~~d~~VA~l~L~~lg~----~i~~lt~~~a~~lg~~e--~~p~~a~ea~mdG~~v  301 (542)
                      +.......+ .+.-.|...  ..+.       ++..+++|+    .|++..+++++++|+..  .||...- +.-.+.+.
T Consensus       122 ~~~~~~~~~~~g~~~w~~~--~~~~-------~l~gktvgIiGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~~~~~~~  191 (343)
T 2yq5_A          122 IGEFRYRMDHDHDFTWPSN--LISN-------EIYNLTVGLIGVGHIGSAVAEIFSAMGAKVIAYDVAYNP-EFEPFLTY  191 (343)
T ss_dssp             HHHHHHHHHHHCCCCCCGG--GCBC-------CGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCG-GGTTTCEE
T ss_pred             hHHHHHHHHHcCCcccccC--CCcc-------ccCCCeEEEEecCHHHHHHHHHHhhCCCEEEEECCChhh-hhhccccc
Confidence            111111111 210123221  1111       345566666    88999999999999942  2444332 22345666


Q ss_pred             eehhhhcccCcEEEEc----cCCCCccCHhHHhcCCCCcEEEccCCCCcccccccccC
Q psy4626         302 VKLNEVIRTVDIVVTA----TGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRT  355 (542)
Q Consensus       302 ~~~~~a~~~~d~~~t~----tg~~~vi~~~~~~~mk~gail~n~gh~~~Ei~~~~l~~  355 (542)
                      .+++|+++++|||++.    ..++++|+.+.|+.||+|++|+|+|++.. +|-++|.+
T Consensus       192 ~~l~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~-vd~~aL~~  248 (343)
T 2yq5_A          192 TDFDTVLKEADIVSLHTPLFPSTENMIGEKQLKEMKKSAYLINCARGEL-VDTGALIK  248 (343)
T ss_dssp             CCHHHHHHHCSEEEECCCCCTTTTTCBCHHHHHHSCTTCEEEECSCGGG-BCHHHHHH
T ss_pred             cCHHHHHhcCCEEEEcCCCCHHHHHHhhHHHHhhCCCCcEEEECCCChh-hhHHHHHH
Confidence            6999999999999993    46799999999999999999999999988 45555543

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=98.70  E-value=2.9e-08  Score=103.59  Aligned_cols=92  Identities=20%  Similarity=0.257  Sum_probs=74.2

Q ss_pred             ccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce---ee-----CHHHHhcCCcEEEEcCCCcc--
Q psy4626          75 FGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS---VV-----KLNEVIRTVDIVVTATGNKN--  144 (542)
Q Consensus        75 l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~---v~-----~l~e~l~~aDvVi~atG~~~--  144 (542)
                      +.+++|+|+|+|.+|+.+++.|+.+|++|+++|+++.++..+...+..   +.     ++.+.+.++|+||+|++.+.  
T Consensus       165 l~~~~VlViGaGgvG~~aa~~a~~~Ga~V~v~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvVI~~~~~~~~~  244 (361)
T 1pjc_A          165 VKPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSRVELLYSNSAEIETAVAEADLLIGAVLVPGRR  244 (361)
T ss_dssp             BCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGSEEEECCHHHHHHHHHTCSEEEECCCCTTSS
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhhCceeEeeeCCHHHHHHHHcCCCEEEECCCcCCCC
Confidence            567999999999999999999999999999999999887665443321   11     23456678999999987543  


Q ss_pred             ---cCCHHHHhccCCCeEEEeccCC
Q psy4626         145 ---VVTREHMDKMKNGCVVCNMGHS  166 (542)
Q Consensus       145 ---lI~~e~l~~mk~GailvnvG~g  166 (542)
                         ++..+.++.|++|+++++++..
T Consensus       245 ~~~li~~~~~~~~~~g~~ivdv~~~  269 (361)
T 1pjc_A          245 APILVPASLVEQMRTGSVIVDVAVD  269 (361)
T ss_dssp             CCCCBCHHHHTTSCTTCEEEETTCT
T ss_pred             CCeecCHHHHhhCCCCCEEEEEecC
Confidence               3567889999999999999864

>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti}

Probab=98.70  E-value=4.2e-08  Score=101.89  Aligned_cols=184  Identities=16%  Similarity=0.208  Sum_probs=107.0

Q ss_pred             hcCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCCCcccChHhhcCCCcceeeeccceeeEecCCCCEEEEecCCCcc
Q psy4626         130 IRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIVLLAEGRLV  209 (542)
Q Consensus       130 l~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g~~eid~~aL~~~~l~v~~~~~~v~~y~~~dg~~I~LLa~GrLv  209 (542)
                      ++++|+++....+  -++++.++.+++-..+...|.|-+.+|++++.++++.+.....                     .
T Consensus        69 ~~~~d~li~~~~~--~i~~~~l~~~p~Lk~I~~~g~G~d~id~~~a~~~gI~V~n~pg---------------------~  125 (340)
T 4dgs_A           69 LPSIRAVATGGGA--GLSNEWMEKLPSLGIIAINGVGTDKVDLARARRRNIDVTTTPG---------------------V  125 (340)
T ss_dssp             GGGCCEEEEETTT--CBCHHHHHHCSSCCEEEEESSCCTTBCHHHHHHTTCEEECCCS---------------------S
T ss_pred             hCCcEEEEEcCCC--CCCHHHHhhCCCCEEEEECCCCccccCHHHHHhCCEEEEECCC---------------------C
Confidence            3789999864322  3678899999988899999999888999988766554443211                     0


Q ss_pred             cccCCCChhHHHh------hHHHHHHHHHHHHhcCCCCCCCCc-cccCChhhHHHHHHhcCCcccc----ccccccHHHH
Q psy4626         210 NLSCSSLPSFVVS------ITACTQALALIELFNAPSGRYKSD-VYLLPKKMDEYVASLHLPTFDA----HLTELSDEQA  278 (542)
Q Consensus       210 nl~~~thp~~vmd------~sfa~q~la~~~L~~~~~~~~~~g-v~~lp~~~d~~VA~l~L~~lg~----~i~~lt~~~a  278 (542)
                            +...+-+      ++++.++-......++  ++|... -+.+.       -++..+++|+    .|++..++++
T Consensus       126 ------~~~~vAE~a~~l~L~~~R~~~~~~~~~~~--g~W~~~~~~~~~-------~~l~gktiGIIGlG~IG~~vA~~l  190 (340)
T 4dgs_A          126 ------LADDVADLGIALMLAVLRRVGDGDRLVRE--GRWAAGEQLPLG-------HSPKGKRIGVLGLGQIGRALASRA  190 (340)
T ss_dssp             ------SHHHHHHHHHHHHHHHHTTHHHHHHHHHT--TCC------CCC-------CCCTTCEEEEECCSHHHHHHHHHH
T ss_pred             ------CcchHHHHHHHHHHHHHhChHHHHHHHhc--CCcccccCcCcc-------ccccCCEEEEECCCHHHHHHHHHH
Confidence                  1111111      1222222222222232  467653 11111       1345567776    8899999999


Q ss_pred             hhcCCCC--CCCCCCCccccCCee-eeehhhhcccCcEEEEc----cCCCCccCHhHHhcCCCCcEEEccCCCCcccccc
Q psy4626         279 KYMGLNK--AGPFKPSYYSMDGFS-VVKLNEVIRTVDIVVTA----TGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVN  351 (542)
Q Consensus       279 ~~lg~~e--~~p~~a~ea~mdG~~-v~~~~~a~~~~d~~~t~----tg~~~vi~~~~~~~mk~gail~n~gh~~~Ei~~~  351 (542)
                      +.+|+..  .||...-+   .++. +.+++|+++++|+|+++    ..++++|+.+.|+.||+|++++|++++.+ +|-+
T Consensus       191 ~~~G~~V~~~dr~~~~~---~~~~~~~sl~ell~~aDvVil~vP~t~~t~~li~~~~l~~mk~gailIN~aRG~v-vde~  266 (340)
T 4dgs_A          191 EAFGMSVRYWNRSTLSG---VDWIAHQSPVDLARDSDVLAVCVAASAATQNIVDASLLQALGPEGIVVNVARGNV-VDED  266 (340)
T ss_dssp             HTTTCEEEEECSSCCTT---SCCEECSSHHHHHHTCSEEEECC----------CHHHHHHTTTTCEEEECSCC-------
T ss_pred             HHCCCEEEEEcCCcccc---cCceecCCHHHHHhcCCEEEEeCCCCHHHHHHhhHHHHhcCCCCCEEEECCCCcc-cCHH
Confidence            9999832  23332211   2333 34789999999999994    34789999999999999999999999988 6766


Q ss_pred             cccC
Q psy4626         352 SLRT  355 (542)
Q Consensus       352 ~l~~  355 (542)
                      +|.+
T Consensus       267 aL~~  270 (340)
T 4dgs_A          267 ALIE  270 (340)
T ss_dssp             ----
T ss_pred             HHHH
Confidence            6665

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=98.68  E-value=9.1e-08  Score=99.47  Aligned_cols=121  Identities=16%  Similarity=0.147  Sum_probs=89.7

Q ss_pred             HHHHHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhh-cCCce-eeCH------HHHhcC
Q psy4626          61 ESIIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQAC-MDGFS-VVKL------NEVIRT  132 (542)
Q Consensus        61 ~s~~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~-~~G~~-v~~l------~e~l~~  132 (542)
                      ...|+++.+. +...+|++|+|+|+|.||+.+++.++.+|++|++++.++.+...+. ..|++ +++.      .++..+
T Consensus       173 ~ta~~al~~~-~~~~~g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~~~~~  251 (366)
T 1yqd_A          173 ITVYSPLKYF-GLDEPGKHIGIVGLGGLGHVAVKFAKAFGSKVTVISTSPSKKEEALKNFGADSFLVSRDQEQMQAAAGT  251 (366)
T ss_dssp             HHHHHHHHHT-TCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHHTSCCSEEEETTCHHHHHHTTTC
T ss_pred             HHHHHHHHhc-CcCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcCCceEEeccCHHHHHHhhCC
Confidence            3456676654 2323899999999999999999999999999999999998877665 67765 3321      223357


Q ss_pred             CcEEEEcCCCcccCCHHHHhccCCCeEEEeccCCC--cccChHhhcCCCccee
Q psy4626         133 VDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSN--TEIDVNSLRTPDLTWE  183 (542)
Q Consensus       133 aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g~--~eid~~aL~~~~l~v~  183 (542)
                      +|+||+++|....+ .+.++.|++++.++++|...  .+++...+..+++++.
T Consensus       252 ~D~vid~~g~~~~~-~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~i~  303 (366)
T 1yqd_A          252 LDGIIDTVSAVHPL-LPLFGLLKSHGKLILVGAPEKPLELPAFSLIAGRKIVA  303 (366)
T ss_dssp             EEEEEECCSSCCCS-HHHHHHEEEEEEEEECCCCSSCEEECHHHHHTTTCEEE
T ss_pred             CCEEEECCCcHHHH-HHHHHHHhcCCEEEEEccCCCCCCcCHHHHHhCCcEEE
Confidence            99999999976566 47899999999999999764  2345444544444443

>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A

Probab=98.67  E-value=3.7e-08  Score=103.20  Aligned_cols=223  Identities=17%  Similarity=0.152  Sum_probs=135.3

Q ss_pred             ChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccC
Q psy4626          86 GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGH  165 (542)
Q Consensus        86 G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~  165 (542)
                      ...-..+...++..|.+|..++....          ....+.+.++++|+++.......-++++.++.+++-..+...|.
T Consensus        24 d~~~~~~~~~l~~~~~~v~~~~~~~~----------~~~~~~~~~~~~d~~i~~~~~~~~~~~~~l~~~~~Lk~I~~~~~   93 (364)
T 2j6i_A           24 TENKLGIANWLKDQGHELITTSDKEG----------GNSVLDQHIPDADIIITTPFHPAYITKERIDKAKKLKLVVVAGV   93 (364)
T ss_dssp             TTTGGGCHHHHHHTTCEEEEESCCSS----------TTSHHHHHGGGCSEEEECTTSCCCBCHHHHHHCTTCCEEEESSS
T ss_pred             cCccHHHHHHHHhCCCEEEEcCCCCC----------CHHHHHHHhhCCeEEEecCcCCCCCCHHHHhhCCCCeEEEECCc
Confidence            33334456677778888776642110          00123455788999987543333477888999988889999999


Q ss_pred             CCcccChHhhcCC--CcceeeeccceeeEecCCCCEEEEecCCCcccccCCCChhHHHhhHHH------HHHHHHHHHhc
Q psy4626         166 SNTEIDVNSLRTP--DLTWEKVRSQVDHVIWPDGKRIVLLAEGRLVNLSCSSLPSFVVSITAC------TQALALIELFN  237 (542)
Q Consensus       166 g~~eid~~aL~~~--~l~v~~~~~~v~~y~~~dg~~I~LLa~GrLvnl~~~thp~~vmd~sfa------~q~la~~~L~~  237 (542)
                      |-+.+|++++.++  ++.+....                          .. ++..+-+..++      .++.......+
T Consensus        94 G~d~id~~~~~~~~~gI~V~n~p--------------------------g~-~~~~vAE~~~~~~L~~~R~~~~~~~~~~  146 (364)
T 2j6i_A           94 GSDHIDLDYINQTGKKISVLEVT--------------------------GS-NVVSVAEHVVMTMLVLVRNFVPAHEQII  146 (364)
T ss_dssp             CCTTBCHHHHHHHTCCCEEEECT--------------------------TS-SHHHHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred             ccccccHHHHHhcCCCEEEEECC--------------------------Cc-CcHHHHHHHHHHHHHHHhChHHHHHHHH
Confidence            9888998887643  33333221                          00 11111111111      11111111222


Q ss_pred             CCCCCCCCccccCChhhHHHHHHhcCCcccc----ccccccHHHHhhcCCC-CC--CCCC--CCccccCCeeee-ehhhh
Q psy4626         238 APSGRYKSDVYLLPKKMDEYVASLHLPTFDA----HLTELSDEQAKYMGLN-KA--GPFK--PSYYSMDGFSVV-KLNEV  307 (542)
Q Consensus       238 ~~~~~~~~gv~~lp~~~d~~VA~l~L~~lg~----~i~~lt~~~a~~lg~~-e~--~p~~--a~ea~mdG~~v~-~~~~a  307 (542)
                      .  ++|...-...+      --++..+++|+    .|++..+++++++|+. ..  |+..  .-.+...|.+.. +++++
T Consensus       147 ~--g~W~~~~~~~~------~~~l~g~tvgIIG~G~IG~~vA~~l~~~G~~~V~~~d~~~~~~~~~~~~g~~~~~~l~el  218 (364)
T 2j6i_A          147 N--HDWEVAAIAKD------AYDIEGKTIATIGAGRIGYRVLERLVPFNPKELLYYDYQALPKDAEEKVGARRVENIEEL  218 (364)
T ss_dssp             T--TCCCHHHHHTT------CCCSTTCEEEEECCSHHHHHHHHHHGGGCCSEEEEECSSCCCHHHHHHTTEEECSSHHHH
T ss_pred             h--CCCCcCcccCC------cccCCCCEEEEECcCHHHHHHHHHHHhCCCcEEEEECCCccchhHHHhcCcEecCCHHHH
Confidence            2  46642100000      01345566776    8888899999999985 32  4332  222334576654 78999


Q ss_pred             cccCcEEEEcc----CCCCccCHhHHhcCCCCcEEEccCCCCccccccccc
Q psy4626         308 IRTVDIVVTAT----GNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLR  354 (542)
Q Consensus       308 ~~~~d~~~t~t----g~~~vi~~~~~~~mk~gail~n~gh~~~Ei~~~~l~  354 (542)
                      ++++|||++++    .++++|+.+.|+.||+|++|+|+|++.. +|-++|.
T Consensus       219 l~~aDvV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~arG~~-vd~~aL~  268 (364)
T 2j6i_A          219 VAQADIVTVNAPLHAGTKGLINKELLSKFKKGAWLVNTARGAI-CVAEDVA  268 (364)
T ss_dssp             HHTCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCGGG-BCHHHHH
T ss_pred             HhcCCEEEECCCCChHHHHHhCHHHHhhCCCCCEEEECCCCch-hCHHHHH
Confidence            99999999943    5679999999999999999999999765 3444444

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=98.66  E-value=7.5e-08  Score=99.68  Aligned_cols=104  Identities=19%  Similarity=0.200  Sum_probs=83.1

Q ss_pred             HHHHHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce-eeCH------HHHh-cC
Q psy4626          61 ESIIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVKL------NEVI-RT  132 (542)
Q Consensus        61 ~s~~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~-v~~l------~e~l-~~  132 (542)
                      ...|+++.++  ...+|++|+|+|.|.||+.+++.++.+|++|++++.++.+...+...|++ +++.      .+.+ .+
T Consensus       166 ~ta~~~l~~~--~~~~g~~VlV~GaG~vG~~~~qlak~~Ga~Vi~~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~~~~~~  243 (360)
T 1piw_A          166 LTVYSPLVRN--GCGPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKMGADHYIATLEEGDWGEKYFDT  243 (360)
T ss_dssp             HHHHHHHHHT--TCSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCSEEEEGGGTSCHHHHSCSC
T ss_pred             HHHHHHHHHc--CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCCCEEEcCcCchHHHHHhhcC
Confidence            3446777664  34579999999999999999999999999999999999888777777865 3332      1222 47


Q ss_pred             CcEEEEcCCC--cccCCHHHHhccCCCeEEEeccCCC
Q psy4626         133 VDIVVTATGN--KNVVTREHMDKMKNGCVVCNMGHSN  167 (542)
Q Consensus       133 aDvVi~atG~--~~lI~~e~l~~mk~GailvnvG~g~  167 (542)
                      +|+||+++|.  ...+. +.++.+++++.++.+|...
T Consensus       244 ~D~vid~~g~~~~~~~~-~~~~~l~~~G~iv~~g~~~  279 (360)
T 1piw_A          244 FDLIVVCASSLTDIDFN-IMPKAMKVGGRIVSISIPE  279 (360)
T ss_dssp             EEEEEECCSCSTTCCTT-TGGGGEEEEEEEEECCCCC
T ss_pred             CCEEEECCCCCcHHHHH-HHHHHhcCCCEEEEecCCC
Confidence            9999999987  66665 6899999999999998754

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=98.66  E-value=9.9e-08  Score=99.47  Aligned_cols=120  Identities=15%  Similarity=0.145  Sum_probs=88.4

Q ss_pred             HHHHHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce-eeCH------HHHhcCC
Q psy4626          61 ESIIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVKL------NEVIRTV  133 (542)
Q Consensus        61 ~s~~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~-v~~l------~e~l~~a  133 (542)
                      ...|+++.+.  ...+|++|+|+|.|.||+.+++.++.+|++|++++.++.+...+...|++ +++.      +++..++
T Consensus       181 ~tA~~al~~~--~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~g~  258 (369)
T 1uuf_A          181 ITTYSPLRHW--QAGPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKALGADEVVNSRNADEMAAHLKSF  258 (369)
T ss_dssp             HHHHHHHHHT--TCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCSEEEETTCHHHHHTTTTCE
T ss_pred             HHHHHHHHhc--CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCcEEeccccHHHHHHhhcCC
Confidence            3446676664  24579999999999999999999999999999999999888877777875 3322      1223578


Q ss_pred             cEEEEcCCCcccCCHHHHhccCCCeEEEeccCCCc---ccChHhhcCCCccee
Q psy4626         134 DIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNT---EIDVNSLRTPDLTWE  183 (542)
Q Consensus       134 DvVi~atG~~~lI~~e~l~~mk~GailvnvG~g~~---eid~~aL~~~~l~v~  183 (542)
                      |++|+++|....+ .+.++.+++++.++.+|....   .++...+..+++++.
T Consensus       259 Dvvid~~g~~~~~-~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~i~  310 (369)
T 1uuf_A          259 DFILNTVAAPHNL-DDFTTLLKRDGTMTLVGAPATPHKSPEVFNLIMKRRAIA  310 (369)
T ss_dssp             EEEEECCSSCCCH-HHHHTTEEEEEEEEECCCC-------CHHHHHTTTCEEE
T ss_pred             CEEEECCCCHHHH-HHHHHHhccCCEEEEeccCCCCccccCHHHHHhCCcEEE
Confidence            9999999976666 378999999999999987642   344444444444433

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=98.66  E-value=5.2e-08  Score=87.77  Aligned_cols=88  Identities=17%  Similarity=0.276  Sum_probs=71.2

Q ss_pred             cCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhh-hhcCCcee---eCHHHHhcCCcEEEEcCCCccc-CCHHH
Q psy4626          76 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQ-ACMDGFSV---VKLNEVIRTVDIVVTATGNKNV-VTREH  150 (542)
Q Consensus        76 ~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~-A~~~G~~v---~~l~e~l~~aDvVi~atG~~~l-I~~e~  150 (542)
                      .|++|+|+|+|.+|+.+++.|+..|++|+++++++.+... +...|..+   .++++++.++|+||+|++..+. +.   
T Consensus        20 ~~~~v~iiG~G~iG~~~a~~l~~~g~~v~v~~r~~~~~~~~a~~~~~~~~~~~~~~~~~~~~Divi~at~~~~~~~~---   96 (144)
T 3oj0_A           20 GGNKILLVGNGMLASEIAPYFSYPQYKVTVAGRNIDHVRAFAEKYEYEYVLINDIDSLIKNNDVIITATSSKTPIVE---   96 (144)
T ss_dssp             CCCEEEEECCSHHHHHHGGGCCTTTCEEEEEESCHHHHHHHHHHHTCEEEECSCHHHHHHTCSEEEECSCCSSCSBC---
T ss_pred             cCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHHhCCceEeecCHHHHhcCCCEEEEeCCCCCcEee---
Confidence            4999999999999999999999999999999999987653 44445442   3567788999999999986543 43   


Q ss_pred             HhccCCCeEEEeccCC
Q psy4626         151 MDKMKNGCVVCNMGHS  166 (542)
Q Consensus       151 l~~mk~GailvnvG~g  166 (542)
                      .+.+++|+.++++|..
T Consensus        97 ~~~l~~g~~vid~~~p  112 (144)
T 3oj0_A           97 ERSLMPGKLFIDLGNP  112 (144)
T ss_dssp             GGGCCTTCEEEECCSS
T ss_pred             HHHcCCCCEEEEccCC
Confidence            2668899999999864

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=98.65  E-value=1.8e-08  Score=105.02  Aligned_cols=120  Identities=21%  Similarity=0.205  Sum_probs=92.3

Q ss_pred             HHHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCCC-EEEEEeCCchhhhhhhcCCce-eeC-----HHHHh-c---
Q psy4626          63 IIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMDGFS-VVK-----LNEVI-R---  131 (542)
Q Consensus        63 ~~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga-~Viv~d~dp~r~~~A~~~G~~-v~~-----l~e~l-~---  131 (542)
                      .++++.++  ...+|++|+|+|.|.+|+.+++.++.+|+ +|++++.++.+...+...|++ +++     ..+.+ +   
T Consensus       171 a~~~l~~~--~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~i~~~~~  248 (370)
T 4ej6_A          171 CLHGVDLS--GIKAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEVGATATVDPSAGDVVEAIAGPVG  248 (370)
T ss_dssp             HHHHHHHH--TCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCSEEECTTSSCHHHHHHSTTS
T ss_pred             HHHHHHhc--CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCCEEECCCCcCHHHHHHhhhh
Confidence            45666544  24579999999999999999999999999 999999999988888888875 333     22222 2   


Q ss_pred             ----CCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCCC----cccChHhhcCCCcceeee
Q psy4626         132 ----TVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSN----TEIDVNSLRTPDLTWEKV  185 (542)
Q Consensus       132 ----~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g~----~eid~~aL~~~~l~v~~~  185 (542)
                          ++|+||+++|....+. +.++.+++++.++.+|...    .+++...+..+++++.+.
T Consensus       249 ~~~gg~Dvvid~~G~~~~~~-~~~~~l~~~G~vv~~G~~~~~~~~~~~~~~~~~~~~~i~g~  309 (370)
T 4ej6_A          249 LVPGGVDVVIECAGVAETVK-QSTRLAKAGGTVVILGVLPQGEKVEIEPFDILFRELRVLGS  309 (370)
T ss_dssp             SSTTCEEEEEECSCCHHHHH-HHHHHEEEEEEEEECSCCCTTCCCCCCHHHHHHTTCEEEEC
T ss_pred             ccCCCCCEEEECCCCHHHHH-HHHHHhccCCEEEEEeccCCCCccccCHHHHHhCCcEEEEe
Confidence                5899999999766664 7899999999999998653    356666665566666554

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=98.65  E-value=8.9e-08  Score=97.11  Aligned_cols=225  Identities=14%  Similarity=0.190  Sum_probs=138.0

Q ss_pred             ccccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceee-CHHHHhcCCcEEEEc---C--------
Q psy4626          73 VMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVV-KLNEVIRTVDIVVTA---T--------  140 (542)
Q Consensus        73 ~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~-~l~e~l~~aDvVi~a---t--------  140 (542)
                      .++.|.+++|+|........++.|...|.+|.+...+..   +....|.... ++.+.++++|+++..   .        
T Consensus         3 ~~~~~mki~v~~~~~~~~~~~~~L~~~g~~v~~~~~~~~---~~~~~g~~~~~~~~~~~~~~d~ii~~~~~~~~~~~i~s   79 (300)
T 2rir_A            3 AMLTGLKIAVIGGDARQLEIIRKLTEQQADIYLVGFDQL---DHGFTGAVKCNIDEIPFQQIDSIILPVSATTGEGVVST   79 (300)
T ss_dssp             CCCCSCEEEEESBCHHHHHHHHHHHHTTCEEEEESCTTS---SCCCTTEEECCGGGSCGGGCSEEECCSSCEETTTEECB
T ss_pred             ccccCCEEEEECCCHHHHHHHHHHHhCCCEEEEEecccc---ccccccceeccchHHHHhcCCEEEeccccccCCccccc
Confidence            346788999999999999999999999999987742211   1112343332 345667899999861   1        


Q ss_pred             ---CCcccCCHHHHhccCCCeEEEeccCCCcccC-hHhhcCCCcceeeeccceeeEecCCCCEEEEecCCCcccccCCCC
Q psy4626         141 ---GNKNVVTREHMDKMKNGCVVCNMGHSNTEID-VNSLRTPDLTWEKVRSQVDHVIWPDGKRIVLLAEGRLVNLSCSSL  216 (542)
Q Consensus       141 ---G~~~lI~~e~l~~mk~GailvnvG~g~~eid-~~aL~~~~l~v~~~~~~v~~y~~~dg~~I~LLa~GrLvnl~~~th  216 (542)
                         +.+..++++.++.++++..++ +|.  +.+| ++++.++++.+.....         ...+         .+     
T Consensus        80 ~~a~~~~~~~~~~l~~~~~l~~i~-~g~--~~~d~~~~~~~~gi~v~~~~~---------~~~v---------~~-----  133 (300)
T 2rir_A           80 VFSNEEVVLKQDHLDRTPAHCVIF-SGI--SNAYLENIAAQAKRKLVKLFE---------RDDI---------AI-----  133 (300)
T ss_dssp             SSCSSCEECCHHHHHTSCTTCEEE-ESS--CCHHHHHHHHHTTCCEEEGGG---------SHHH---------HH-----
T ss_pred             ccccCCccchHHHHhhcCCCCEEE-Eec--CCHHHHHHHHHCCCEEEeecC---------CCce---------EE-----
Confidence               233337788899999998887 554  4566 6677655554433211         0000         00     


Q ss_pred             hhHHHhhHHHHHHHHHHHHhcCCCCCCCCccccCChhhHHHHHHhcCCcccc----ccccccHHHHhhcCCC--CCCCC-
Q psy4626         217 PSFVVSITACTQALALIELFNAPSGRYKSDVYLLPKKMDEYVASLHLPTFDA----HLTELSDEQAKYMGLN--KAGPF-  289 (542)
Q Consensus       217 p~~vmd~sfa~q~la~~~L~~~~~~~~~~gv~~lp~~~d~~VA~l~L~~lg~----~i~~lt~~~a~~lg~~--e~~p~-  289 (542)
                       ..  .++.+.....  ......    ..              ++..+++++    .+++...++++.+|+.  ..||. 
T Consensus       134 -~r--~~~~~~g~~~--~~~~~~----~~--------------~l~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~d~~~  190 (300)
T 2rir_A          134 -YN--SIPTVEGTIM--LAIQHT----DY--------------TIHGSQVAVLGLGRTGMTIARTFAALGANVKVGARSS  190 (300)
T ss_dssp             -HH--HHHHHHHHHH--HHHHTC----SS--------------CSTTSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             -Ec--CccHHHHHHH--HHHHhc----CC--------------CCCCCEEEEEcccHHHHHHHHHHHHCCCEEEEEECCH
Confidence             00  0111110000  000100    00              112234444    7777788888888873  22332 


Q ss_pred             -CCCccccCCeee---eehhhhcccCcEEEEccCCCCccCHhHHhcCCCCcEEEccCCCCccccc
Q psy4626         290 -KPSYYSMDGFSV---VKLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDV  350 (542)
Q Consensus       290 -~a~ea~mdG~~v---~~~~~a~~~~d~~~t~tg~~~vi~~~~~~~mk~gail~n~gh~~~Ei~~  350 (542)
                       +..++.-.|+++   .+++++++.+|+||+++.. ++|+.+.|+.||+|++++|+++...++++
T Consensus       191 ~~~~~~~~~g~~~~~~~~l~~~l~~aDvVi~~~p~-~~i~~~~~~~mk~g~~lin~a~g~~~~~~  254 (300)
T 2rir_A          191 AHLARITEMGLVPFHTDELKEHVKDIDICINTIPS-MILNQTVLSSMTPKTLILDLASRPGGTDF  254 (300)
T ss_dssp             HHHHHHHHTTCEEEEGGGHHHHSTTCSEEEECCSS-CCBCHHHHTTSCTTCEEEECSSTTCSBCH
T ss_pred             HHHHHHHHCCCeEEchhhHHHHhhCCCEEEECCCh-hhhCHHHHHhCCCCCEEEEEeCCCCCcCH
Confidence             221111236654   3578899999999999997 78999999999999999999998877664

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=98.65  E-value=3.5e-08  Score=102.05  Aligned_cols=120  Identities=17%  Similarity=0.289  Sum_probs=90.1

Q ss_pred             HHHHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCCC-EEEEEeCCchhhhhhhcCCce-eeCH-----HH---Hh-
Q psy4626          62 SIIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMDGFS-VVKL-----NE---VI-  130 (542)
Q Consensus        62 s~~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga-~Viv~d~dp~r~~~A~~~G~~-v~~l-----~e---~l-  130 (542)
                      ..++++.++  ...+|++|+|+|.|.+|+.+++.++.+|+ +|++++.++.+...+...|++ +++.     ++   .+ 
T Consensus       159 ta~~al~~~--~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~  236 (356)
T 1pl8_A          159 VGIHACRRG--GVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVE  236 (356)
T ss_dssp             HHHHHHHHH--TCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHH
T ss_pred             HHHHHHHhc--CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEcCcccccchHHHHHH
Confidence            346666544  24579999999999999999999999999 999999999988878888874 3221     11   11 


Q ss_pred             ----cCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCCC--cccChHhhcCCCcceee
Q psy4626         131 ----RTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSN--TEIDVNSLRTPDLTWEK  184 (542)
Q Consensus       131 ----~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g~--~eid~~aL~~~~l~v~~  184 (542)
                          .++|+||+++|....+ .+.++.+++++.++.+|...  ..++...+..+++++.+
T Consensus       237 ~~~~~g~D~vid~~g~~~~~-~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~i~g  295 (356)
T 1pl8_A          237 GQLGCKPEVTIECTGAEASI-QAGIYATRSGGTLVLVGLGSEMTTVPLLHAAIREVDIKG  295 (356)
T ss_dssp             HHHTSCCSEEEECSCCHHHH-HHHHHHSCTTCEEEECSCCCSCCCCCHHHHHHTTCEEEE
T ss_pred             HHhCCCCCEEEECCCChHHH-HHHHHHhcCCCEEEEEecCCCCCccCHHHHHhcceEEEE
Confidence                3699999999986566 37899999999999998653  34555555545555444

>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum}

Probab=98.63  E-value=5.6e-08  Score=101.37  Aligned_cols=198  Identities=14%  Similarity=0.246  Sum_probs=122.4

Q ss_pred             HHhcCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCCC----cccChHhhcCCCcceeeeccceeeEecCCCCEEEEe
Q psy4626         128 EVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSN----TEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIVLL  203 (542)
Q Consensus       128 e~l~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g~----~eid~~aL~~~~l~v~~~~~~v~~y~~~dg~~I~LL  203 (542)
                      +.++++|+++.... ..-++++.++.+++-..+...|.|-    +.+|++++.++++.+.....                
T Consensus        44 ~~~~~ad~li~~~~-~~~~~~~~l~~~~~Lk~I~~~g~G~~~~~d~id~~~a~~~gI~V~n~pg----------------  106 (352)
T 3gg9_A           44 ARVADVEALVLIRE-RTRVTRQLLDRLPKLKIISQTGRVSRDAGGHIDLEACTDKGVVVLEGKG----------------  106 (352)
T ss_dssp             HHTTTCSEEEECTT-SSCBCHHHHTTCTTCCEEEESSCCCCSSSCSBCHHHHHHHTCEEECCCC----------------
T ss_pred             HHhcCCeEEEEeCC-CCCCCHHHHhhCCCCeEEEEeCcccCCccCcccHHHHHhCCeEEEECCC----------------
Confidence            34689999987322 2246788999998888888889887    88999887755444432210                


Q ss_pred             cCCCcccccCCCChhHHH--hhHHHHHHHHHHHHhcCCCCCCCCccc---cCChhhHHHHHHhcCCcccc----cccccc
Q psy4626         204 AEGRLVNLSCSSLPSFVV--SITACTQALALIELFNAPSGRYKSDVY---LLPKKMDEYVASLHLPTFDA----HLTELS  274 (542)
Q Consensus       204 a~GrLvnl~~~thp~~vm--d~sfa~q~la~~~L~~~~~~~~~~gv~---~lp~~~d~~VA~l~L~~lg~----~i~~lt  274 (542)
                         . ..   + ....++  -++++.++.......+.  ++|...-.   ..|... ..-.++..+++|+    .|++..
T Consensus       107 ---~-~~---~-vAE~al~l~L~~~R~~~~~~~~~~~--g~W~~~~~~~~~~~~~~-~~~~~l~g~tvGIIGlG~IG~~v  175 (352)
T 3gg9_A          107 ---S-PV---A-PAELTWALVMAAQRRIPQYVASLKH--GAWQQSGLKSTTMPPNF-GIGRVLKGQTLGIFGYGKIGQLV  175 (352)
T ss_dssp             ---C-SH---H-HHHHHHHHHHHHHTTHHHHHHHHHT--TCTTCCCCCCTTSCTTT-TSBCCCTTCEEEEECCSHHHHHH
T ss_pred             ---C-cH---H-HHHHHHHHHHHHHhhHHHHHHHHHc--CCCCccccccccccccc-ccCccCCCCEEEEEeECHHHHHH
Confidence               0 00   0 000000  11222222111122222  46654210   000000 0001345566766    888889


Q ss_pred             HHHHhhcCCCC--CCCCCC-CccccCCeeee-ehhhhcccCcEEEE----ccCCCCccCHhHHhcCCCCcEEEccCCCCc
Q psy4626         275 DEQAKYMGLNK--AGPFKP-SYYSMDGFSVV-KLNEVIRTVDIVVT----ATGNKNVVTREHMDKMKNGCVVCNMGHSNT  346 (542)
Q Consensus       275 ~~~a~~lg~~e--~~p~~a-~ea~mdG~~v~-~~~~a~~~~d~~~t----~tg~~~vi~~~~~~~mk~gail~n~gh~~~  346 (542)
                      +++++++|+..  .||... .++.-.|++.. +++|+++++|+|++    +..++++|+.+.|+.||+|++++|+|++..
T Consensus       176 A~~l~~~G~~V~~~d~~~~~~~~~~~g~~~~~~l~ell~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~  255 (352)
T 3gg9_A          176 AGYGRAFGMNVLVWGRENSKERARADGFAVAESKDALFEQSDVLSVHLRLNDETRSIITVADLTRMKPTALFVNTSRAEL  255 (352)
T ss_dssp             HHHHHHTTCEEEEECSHHHHHHHHHTTCEECSSHHHHHHHCSEEEECCCCSTTTTTCBCHHHHTTSCTTCEEEECSCGGG
T ss_pred             HHHHHhCCCEEEEECCCCCHHHHHhcCceEeCCHHHHHhhCCEEEEeccCcHHHHHhhCHHHHhhCCCCcEEEECCCchh
Confidence            99999999843  244432 23445788877 89999999999999    345789999999999999999999999887


Q ss_pred             cccccccc
Q psy4626         347 EIDVNSLR  354 (542)
Q Consensus       347 Ei~~~~l~  354 (542)
                       +|-++|.
T Consensus       256 -vd~~aL~  262 (352)
T 3gg9_A          256 -VEENGMV  262 (352)
T ss_dssp             -BCTTHHH
T ss_pred             -hcHHHHH
Confidence             3544444

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*

Probab=98.63  E-value=1.2e-07  Score=100.52  Aligned_cols=178  Identities=11%  Similarity=0.089  Sum_probs=117.2

Q ss_pred             HHhcCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCCCcccChHhhcCCCcceeeeccceeeEecCCCCEEEEecCCC
Q psy4626         128 EVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIVLLAEGR  207 (542)
Q Consensus       128 e~l~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g~~eid~~aL~~~~l~v~~~~~~v~~y~~~dg~~I~LLa~Gr  207 (542)
                      +.++++|+++..+.+  .++++.|+.+++-..+...|.|-+.+|+++..++++.+.....                    
T Consensus        43 ~~~~~~d~l~~~~~~--~~~~~~l~~~~~Lk~I~~~~~G~d~iD~~~a~~~GI~V~n~p~--------------------  100 (404)
T 1sc6_A           43 ESIRDAHFIGLRSRT--HLTEDVINAAEKLVAIGAFAIGTNQVDLDAAAKRGIPVFNAPF--------------------  100 (404)
T ss_dssp             HHTTSCSEEEECSSC--CBCHHHHHHCSSCCEEEECSSCCTTBCHHHHHHTTCCEECCTT--------------------
T ss_pred             HHhcCCeEEEEcCCC--CCCHHHHhhCCCCcEEEECCcccCccCHHHHHhCCCEEEecCc--------------------
Confidence            456889998765433  4778889999888889899999889999988766554443210                    


Q ss_pred             cccccCCCChhHHHhhHH------HHHHHHHHHHhcCCCCCCCCccccCChhhHHHHHHhcCCcccc----ccccccHHH
Q psy4626         208 LVNLSCSSLPSFVVSITA------CTQALALIELFNAPSGRYKSDVYLLPKKMDEYVASLHLPTFDA----HLTELSDEQ  277 (542)
Q Consensus       208 Lvnl~~~thp~~vmd~sf------a~q~la~~~L~~~~~~~~~~gv~~lp~~~d~~VA~l~L~~lg~----~i~~lt~~~  277 (542)
                             .++..+-...+      +.++.......++  ++|...-+. .       -++..+++|+    .|++..+++
T Consensus       101 -------~n~~~vAE~~~~~~L~~~R~i~~~~~~~~~--g~W~~~~~~-~-------~el~gktlGiIGlG~IG~~vA~~  163 (404)
T 1sc6_A          101 -------SNTRSVAELVIGELLLLLRGVPEANAKAHR--GVGNKLAAG-S-------FEARGKKLGIIGYGHIGTQLGIL  163 (404)
T ss_dssp             -------TTHHHHHHHHHHHHHHHHHTHHHHHHHHHH--TCCC------C-------CCSTTCEEEEECCSHHHHHHHHH
T ss_pred             -------ccHHHHHHHHHHHHHHHHhChHHHHHHHHc--CCccccCCC-c-------cccCCCEEEEEeECHHHHHHHHH
Confidence                   01111111122      2211111111222  567542110 0       1355667777    899999999


Q ss_pred             HhhcCCC--CCCCCCCCccccCCeee-eehhhhcccCcEEEE----ccCCCCccCHhHHhcCCCCcEEEccCCCCc
Q psy4626         278 AKYMGLN--KAGPFKPSYYSMDGFSV-VKLNEVIRTVDIVVT----ATGNKNVVTREHMDKMKNGCVVCNMGHSNT  346 (542)
Q Consensus       278 a~~lg~~--e~~p~~a~ea~mdG~~v-~~~~~a~~~~d~~~t----~tg~~~vi~~~~~~~mk~gail~n~gh~~~  346 (542)
                      ++++|+.  -.||.+..+  ..|.+. .+++|+++++|+|++    +..++++|+.+.|+.||+|++++|++++..
T Consensus       164 l~~~G~~V~~~d~~~~~~--~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~ga~lIN~aRg~~  237 (404)
T 1sc6_A          164 AESLGMYVYFYDIENKLP--LGNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTV  237 (404)
T ss_dssp             HHHTTCEEEEECSSCCCC--CTTCEECSCHHHHHHHCSEEEECCCSSTTTTTCBCHHHHHHSCTTEEEEECSCSSS
T ss_pred             HHHCCCEEEEEcCCchhc--cCCceecCCHHHHHhcCCEEEEccCCChHHHHHhhHHHHhhcCCCeEEEECCCChH
Confidence            9999984  335544332  234444 489999999999999    447889999999999999999999999876

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=98.63  E-value=6.1e-08  Score=99.95  Aligned_cols=121  Identities=15%  Similarity=0.233  Sum_probs=90.8

Q ss_pred             HHHHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce-eeCH-------HHH---h
Q psy4626          62 SIIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVKL-------NEV---I  130 (542)
Q Consensus        62 s~~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~-v~~l-------~e~---l  130 (542)
                      ..|+++.++  ...+|++|+|+|.|.+|+.+++.++.+|++|++++.++.+...+...|++ +++.       +++   .
T Consensus       156 ta~~al~~~--~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~~~~~~~~~~~~~i~~~~  233 (352)
T 1e3j_A          156 VGVHACRRA--GVQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERI  233 (352)
T ss_dssp             HHHHHHHHH--TCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHH
T ss_pred             HHHHHHHhc--CCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhCCCEEEcCcccccHHHHHHHHh
Confidence            346666544  24579999999999999999999999999999999999888877777864 2221       111   2


Q ss_pred             -----cCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCCC--cccChHhhcCCCcceeee
Q psy4626         131 -----RTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSN--TEIDVNSLRTPDLTWEKV  185 (542)
Q Consensus       131 -----~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g~--~eid~~aL~~~~l~v~~~  185 (542)
                           .++|++|+++|....+ .+.++.+++++.++.+|...  ..++...+..+++++.+.
T Consensus       234 ~~~~g~g~D~vid~~g~~~~~-~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~i~g~  294 (352)
T 1e3j_A          234 RSAIGDLPNVTIDCSGNEKCI-TIGINITRTGGTLMLVGMGSQMVTVPLVNACAREIDIKSV  294 (352)
T ss_dssp             HHHSSSCCSEEEECSCCHHHH-HHHHHHSCTTCEEEECSCCSSCCCCCHHHHHTTTCEEEEC
T ss_pred             ccccCCCCCEEEECCCCHHHH-HHHHHHHhcCCEEEEEecCCCCccccHHHHHhcCcEEEEe
Confidence                 2699999999986556 37899999999999998753  345555565555555543

>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp}

Probab=98.62  E-value=4.3e-08  Score=101.16  Aligned_cols=182  Identities=15%  Similarity=0.174  Sum_probs=115.2

Q ss_pred             HHhcCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCCCcccChHhhcCCCcceeeeccceeeEecCCCCEEEEecCCC
Q psy4626         128 EVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIVLLAEGR  207 (542)
Q Consensus       128 e~l~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g~~eid~~aL~~~~l~v~~~~~~v~~y~~~dg~~I~LLa~Gr  207 (542)
                      +.++++|+++...   .+ .++.++.+++-..|...|.|-+.+|.+++.. .+.+....                     
T Consensus        43 ~~~~~ad~li~~~---~~-~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~-gI~v~n~~---------------------   96 (324)
T 3hg7_A           43 KLIGEAHILMAEP---AR-AKPLLAKANKLSWFQSTYAGVDVLLDARCRR-DYQLTNVR---------------------   96 (324)
T ss_dssp             HHGGGCSEEEECH---HH-HGGGGGGCTTCCEEEESSSCCGGGSCTTSCC-SSEEECCC---------------------
T ss_pred             HHhCCCEEEEECC---CC-CHHHHhhCCCceEEEECCCCCCccChHHHhC-CEEEEECC---------------------
Confidence            4578999998632   23 3467888888889999999877777766543 23222211                     


Q ss_pred             cccccCCCChhHHHhh------HHHHHHHHHHHHhcCCCCCCCCccccCChhhHHHHHHhcCCcccc----ccccccHHH
Q psy4626         208 LVNLSCSSLPSFVVSI------TACTQALALIELFNAPSGRYKSDVYLLPKKMDEYVASLHLPTFDA----HLTELSDEQ  277 (542)
Q Consensus       208 Lvnl~~~thp~~vmd~------sfa~q~la~~~L~~~~~~~~~~gv~~lp~~~d~~VA~l~L~~lg~----~i~~lt~~~  277 (542)
                           . .+...+-+.      +++.++.......+.  ++|.+....          ++..+++|+    .|++..+++
T Consensus        97 -----g-~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~--g~W~~~~~~----------~l~g~tvGIIGlG~IG~~vA~~  158 (324)
T 3hg7_A           97 -----G-IFGPLMSEYVFGHLLSLMRQLPLYREQQKQ--RLWQSHPYQ----------GLKGRTLLILGTGSIGQHIAHT  158 (324)
T ss_dssp             -----S-CCHHHHHHHHHHHHHHHHTTHHHHHHHHHT--TCCCCCCCC----------CSTTCEEEEECCSHHHHHHHHH
T ss_pred             -----C-cChHHHHHHHHHHHHHHHhChHHHHHHHhh--CCCcCCCCc----------ccccceEEEEEECHHHHHHHHH
Confidence                 0 011111111      112221111122222  567653211          455567776    899999999


Q ss_pred             HhhcCCCC--CCCC-CCCccccCCeeeeehhhhcccCcEEEE----ccCCCCccCHhHHhcCCCCcEEEccCCCCccccc
Q psy4626         278 AKYMGLNK--AGPF-KPSYYSMDGFSVVKLNEVIRTVDIVVT----ATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDV  350 (542)
Q Consensus       278 a~~lg~~e--~~p~-~a~ea~mdG~~v~~~~~a~~~~d~~~t----~tg~~~vi~~~~~~~mk~gail~n~gh~~~Ei~~  350 (542)
                      ++++|+..  .||. +..+..-.++...+++|+++++|||++    +..++++|+.+.|+.||+|++++|+|++.. +|-
T Consensus       159 l~~~G~~V~~~dr~~~~~~~~~~~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~gailIN~aRG~~-vde  237 (324)
T 3hg7_A          159 GKHFGMKVLGVSRSGRERAGFDQVYQLPALNKMLAQADVIVSVLPATRETHHLFTASRFEHCKPGAILFNVGRGNA-INE  237 (324)
T ss_dssp             HHHTTCEEEEECSSCCCCTTCSEEECGGGHHHHHHTCSEEEECCCCCSSSTTSBCTTTTTCSCTTCEEEECSCGGG-BCH
T ss_pred             HHhCCCEEEEEcCChHHhhhhhcccccCCHHHHHhhCCEEEEeCCCCHHHHHHhHHHHHhcCCCCcEEEECCCchh-hCH
Confidence            99999842  2332 233332334555689999999999999    356789999999999999999999999987 344


Q ss_pred             cccc
Q psy4626         351 NSLR  354 (542)
Q Consensus       351 ~~l~  354 (542)
                      ++|.
T Consensus       238 ~aL~  241 (324)
T 3hg7_A          238 GDLL  241 (324)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4343

>4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli}

Probab=98.62  E-value=2.3e-08  Score=104.78  Aligned_cols=186  Identities=12%  Similarity=0.177  Sum_probs=116.5

Q ss_pred             HhcCCcEEEEcCCCcccCCHHHHhccCCCeEEEec-cCCCcccChHhhcCCCcceeeeccceeeEecCCCCEEEEecCCC
Q psy4626         129 VIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNM-GHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIVLLAEGR  207 (542)
Q Consensus       129 ~l~~aDvVi~atG~~~lI~~e~l~~mk~Gailvnv-G~g~~eid~~aL~~~~l~v~~~~~~v~~y~~~dg~~I~LLa~Gr  207 (542)
                      .+.++|+++..    .-++++.++.+++-..+..+ |.|-+.+|++++.++++.+.....                    
T Consensus        73 ~~~~~~~i~~~----~~i~~~~l~~~p~Lk~I~~~~~~G~d~iD~~~a~~~GI~V~n~~~--------------------  128 (365)
T 4hy3_A           73 ILGRARYIIGQ----PPLSAETLARMPALRSILNVESNLLNNMPYEVLFQRGIHVVTTGQ--------------------  128 (365)
T ss_dssp             HHHHEEEEEEC----CCCCHHHHTTCTTCCEEECCSSSCCSCSCTTHHHHSCCEEEECGG--------------------
T ss_pred             hhCCeEEEEeC----CCCCHHHHhhCCCCeEEEEecccccCcccHHHHhcCCeEEEeCCC--------------------
Confidence            44567887732    24678899999888777765 566667888888765554432211                    


Q ss_pred             cccccCCCChhHHHhhHHHH------HHHHHHHHhcCCCCC--CCCccccCChhhHHHHHHhcCCcccc----ccccccH
Q psy4626         208 LVNLSCSSLPSFVVSITACT------QALALIELFNAPSGR--YKSDVYLLPKKMDEYVASLHLPTFDA----HLTELSD  275 (542)
Q Consensus       208 Lvnl~~~thp~~vmd~sfa~------q~la~~~L~~~~~~~--~~~gv~~lp~~~d~~VA~l~L~~lg~----~i~~lt~  275 (542)
                       .      +...+-+..++.      ++.......+.  ++  |...-...+       .++..+++|+    .|++..+
T Consensus       129 -~------~~~~vAE~~l~l~L~~~R~~~~~~~~~r~--g~~~w~~~~~~~~-------~~l~gktvGIIGlG~IG~~vA  192 (365)
T 4hy3_A          129 -V------FAEPVAEIGLGFALALARGIVDADIAFQE--GTELWGGEGNASA-------RLIAGSEIGIVGFGDLGKALR  192 (365)
T ss_dssp             -G------GHHHHHHHHHHHHHHHHHTTTHHHHHHHH--TCCCCSSSSTTSC-------CCSSSSEEEEECCSHHHHHHH
T ss_pred             -c------cchHHHHHHHHHHHHHHhchhHHHHHHHc--CCccccccccccc-------cccCCCEEEEecCCcccHHHH
Confidence             0      111111122221      11111111111  23  432110001       1345567777    8999999


Q ss_pred             HHHhhcCCC--CCCCCCCC-ccccCCeeeeehhhhcccCcEEEE----ccCCCCccCHhHHhcCCCCcEEEccCCCCccc
Q psy4626         276 EQAKYMGLN--KAGPFKPS-YYSMDGFSVVKLNEVIRTVDIVVT----ATGNKNVVTREHMDKMKNGCVVCNMGHSNTEI  348 (542)
Q Consensus       276 ~~a~~lg~~--e~~p~~a~-ea~mdG~~v~~~~~a~~~~d~~~t----~tg~~~vi~~~~~~~mk~gail~n~gh~~~Ei  348 (542)
                      ++++++|+.  -.||.... .+...|++..+++|+++++|||++    +..++++|+.+.|+.||+|++|+|+|++++ +
T Consensus       193 ~~l~~fG~~V~~~d~~~~~~~~~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~~mk~gailIN~aRG~~-v  271 (365)
T 4hy3_A          193 RVLSGFRARIRVFDPWLPRSMLEENGVEPASLEDVLTKSDFIFVVAAVTSENKRFLGAEAFSSMRRGAAFILLSRADV-V  271 (365)
T ss_dssp             HHHTTSCCEEEEECSSSCHHHHHHTTCEECCHHHHHHSCSEEEECSCSSCC---CCCHHHHHTSCTTCEEEECSCGGG-S
T ss_pred             HhhhhCCCEEEEECCCCCHHHHhhcCeeeCCHHHHHhcCCEEEEcCcCCHHHHhhcCHHHHhcCCCCcEEEECcCCch-h
Confidence            999999994  23555433 234578888899999999999998    456899999999999999999999999988 6


Q ss_pred             ccccccC
Q psy4626         349 DVNSLRT  355 (542)
Q Consensus       349 ~~~~l~~  355 (542)
                      |-++|.+
T Consensus       272 de~aL~~  278 (365)
T 4hy3_A          272 DFDALMA  278 (365)
T ss_dssp             CHHHHHH
T ss_pred             CHHHHHH
Confidence            7666654

>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}

Probab=98.60  E-value=2.6e-07  Score=93.40  Aligned_cols=91  Identities=24%  Similarity=0.348  Sum_probs=75.2

Q ss_pred             HHHHHHHHHHhhcCccccCcEEEEEcCCh-hHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCCcEEE
Q psy4626          59 CRESIIDSLKRSTDVMFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVV  137 (542)
Q Consensus        59 ~~~s~~~ai~r~~~~~l~GktVvViG~G~-IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~aDvVi  137 (542)
                      +-.+++..+.+ .+..+.|++++|+|.|. +|+.+|+.|...|++|++++..             ..++++.++.||+||
T Consensus       144 Tp~gv~~lL~~-~~i~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~-------------t~~L~~~~~~ADIVI  209 (285)
T 3l07_A          144 TPKGIMTMLRE-YGIKTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRF-------------TTDLKSHTTKADILI  209 (285)
T ss_dssp             HHHHHHHHHHH-TTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT-------------CSSHHHHHTTCSEEE
T ss_pred             CHHHHHHHHHH-hCCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCC-------------chhHHHhcccCCEEE
Confidence            34566665444 45789999999999987 7999999999999999999742             236778899999999


Q ss_pred             EcCCCcccCCHHHHhccCCCeEEEeccCC
Q psy4626         138 TATGNKNVVTREHMDKMKNGCVVCNMGHS  166 (542)
Q Consensus       138 ~atG~~~lI~~e~l~~mk~GailvnvG~g  166 (542)
                      .++|.+++|+++   .+|+|++++++|..
T Consensus       210 ~Avg~p~~I~~~---~vk~GavVIDvgi~  235 (285)
T 3l07_A          210 VAVGKPNFITAD---MVKEGAVVIDVGIN  235 (285)
T ss_dssp             ECCCCTTCBCGG---GSCTTCEEEECCCE
T ss_pred             ECCCCCCCCCHH---HcCCCcEEEEeccc
Confidence            999999999864   46999999999964

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=98.59  E-value=1.6e-07  Score=96.78  Aligned_cols=122  Identities=18%  Similarity=0.186  Sum_probs=91.0

Q ss_pred             HHHHHHHHhhcCcc-----ccCcEEEEE-cCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce-eeC----HHHH
Q psy4626          61 ESIIDSLKRSTDVM-----FGGKQVVLC-GYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVK----LNEV  129 (542)
Q Consensus        61 ~s~~~ai~r~~~~~-----l~GktVvVi-G~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~-v~~----l~e~  129 (542)
                      -..|+++.+..+..     .+|++|+|+ |.|.||+.+++.++.+|++|++++.++.+...+...|++ +++    ..+.
T Consensus       130 ~ta~~~l~~~~~~~~~~~~~~g~~VlV~gg~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~  209 (346)
T 3fbg_A          130 ITAYETLFDVFGISRNRNENEGKTLLIINGAGGVGSIATQIAKAYGLRVITTASRNETIEWTKKMGADIVLNHKESLLNQ  209 (346)
T ss_dssp             HHHHHHHHTTSCCCSSHHHHTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEECCSHHHHHHHHHHTCSEEECTTSCHHHH
T ss_pred             HHHHHHHHHhcCCccccccCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCcEEEECCccHHHH
Confidence            34566665433322     179999999 799999999999999999999999999888877777875 332    2222


Q ss_pred             h-----cCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCCCcccChHhhcCCCccee
Q psy4626         130 I-----RTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWE  183 (542)
Q Consensus       130 l-----~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g~~eid~~aL~~~~l~v~  183 (542)
                      +     .+.|++++|+|....+. ..++.+++++.++.+|.....+++..+..++++..
T Consensus       210 ~~~~~~~g~Dvv~d~~g~~~~~~-~~~~~l~~~G~iv~~~~~~~~~~~~~~~~~~~~~~  267 (346)
T 3fbg_A          210 FKTQGIELVDYVFCTFNTDMYYD-DMIQLVKPRGHIATIVAFENDQDLNALKPKSLSFS  267 (346)
T ss_dssp             HHHHTCCCEEEEEESSCHHHHHH-HHHHHEEEEEEEEESSCCSSCBCGGGGTTTTCEEE
T ss_pred             HHHhCCCCccEEEECCCchHHHH-HHHHHhccCCEEEEECCCCCCCccccccccceEEE
Confidence            2     36899999999766664 68899999999999886666677666655554443

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*

Probab=98.59  E-value=1.1e-07  Score=98.41  Aligned_cols=105  Identities=17%  Similarity=0.135  Sum_probs=82.2

Q ss_pred             HHHHHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhh-cCCce-eeCH---H---HHhcC
Q psy4626          61 ESIIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQAC-MDGFS-VVKL---N---EVIRT  132 (542)
Q Consensus        61 ~s~~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~-~~G~~-v~~l---~---e~l~~  132 (542)
                      ...|+++.+. +...+|++|+|+|+|+||+.+++.++.+|++|++++.++.+...+. ..|++ +++.   +   ++..+
T Consensus       166 ~ta~~~l~~~-~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~g  244 (357)
T 2cf5_A          166 VTVYSPLSHF-GLKQPGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSNKKREEALQDLGADDYVIGSDQAKMSELADS  244 (357)
T ss_dssp             HHHHHHHHHT-STTSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSTTHHHHHHTTSCCSCEEETTCHHHHHHSTTT
T ss_pred             HHHHHHHHhc-CCCCCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHcCCceeeccccHHHHHHhcCC
Confidence            3456676654 2222899999999999999999999999999999999988877666 77875 3322   1   22357


Q ss_pred             CcEEEEcCCCcccCCHHHHhccCCCeEEEeccCCC
Q psy4626         133 VDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSN  167 (542)
Q Consensus       133 aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g~  167 (542)
                      +|++|+++|....+. +.++.+++++.++.+|...
T Consensus       245 ~D~vid~~g~~~~~~-~~~~~l~~~G~iv~~G~~~  278 (357)
T 2cf5_A          245 LDYVIDTVPVHHALE-PYLSLLKLDGKLILMGVIN  278 (357)
T ss_dssp             EEEEEECCCSCCCSH-HHHTTEEEEEEEEECSCCS
T ss_pred             CCEEEECCCChHHHH-HHHHHhccCCEEEEeCCCC
Confidence            899999999766664 7899999999999999754

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=98.59  E-value=1.5e-07  Score=96.56  Aligned_cols=120  Identities=16%  Similarity=0.161  Sum_probs=91.0

Q ss_pred             HHHHHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce-eeC-----HHHHh----
Q psy4626          61 ESIIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVK-----LNEVI----  130 (542)
Q Consensus        61 ~s~~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~-v~~-----l~e~l----  130 (542)
                      ...|+++.+.  ...+|++|+|+|.|.+|..+++.++.+|++|++++.++.+...+...|++ +++     ..+.+    
T Consensus       153 ~ta~~~l~~~--~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~~~  230 (340)
T 3s2e_A          153 VTVYKGLKVT--DTRPGQWVVISGIGGLGHVAVQYARAMGLRVAAVDIDDAKLNLARRLGAEVAVNARDTDPAAWLQKEI  230 (340)
T ss_dssp             HHHHHHHHTT--TCCTTSEEEEECCSTTHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHH
T ss_pred             HHHHHHHHHc--CCCCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCCEEEeCCCcCHHHHHHHhC
Confidence            4457777554  34689999999999999999999999999999999999998888888875 332     22222    


Q ss_pred             cCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCCC--cccChHhhcCCCccee
Q psy4626         131 RTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSN--TEIDVNSLRTPDLTWE  183 (542)
Q Consensus       131 ~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g~--~eid~~aL~~~~l~v~  183 (542)
                      .++|++++++|....+. ..++.+++++.++.+|...  ..++...+..+++++.
T Consensus       231 g~~d~vid~~g~~~~~~-~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~i~  284 (340)
T 3s2e_A          231 GGAHGVLVTAVSPKAFS-QAIGMVRRGGTIALNGLPPGDFGTPIFDVVLKGITIR  284 (340)
T ss_dssp             SSEEEEEESSCCHHHHH-HHHHHEEEEEEEEECSCCSSEEEEEHHHHHHTTCEEE
T ss_pred             CCCCEEEEeCCCHHHHH-HHHHHhccCCEEEEeCCCCCCCCCCHHHHHhCCeEEE
Confidence            37899999998777774 7899999999999998764  3344444433444443

>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A

Probab=98.58  E-value=2.1e-07  Score=93.64  Aligned_cols=89  Identities=20%  Similarity=0.334  Sum_probs=74.2

Q ss_pred             HHHHHHHHHHhhcCccccCcEEEEEcCCh-hHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCCcEEE
Q psy4626          59 CRESIIDSLKRSTDVMFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVV  137 (542)
Q Consensus        59 ~~~s~~~ai~r~~~~~l~GktVvViG~G~-IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~aDvVi  137 (542)
                      |-.+++..+.+. +  +.|++++|+|.|. +|+.+|+.|...|++|++++..             ..++++.++.||+||
T Consensus       135 Tp~gv~~lL~~~-~--l~Gk~vvVvG~s~iVG~plA~lL~~~gAtVtv~~~~-------------t~~L~~~~~~ADIVI  198 (276)
T 3ngx_A          135 TPRAVIDIMDYY-G--YHENTVTIVNRSPVVGRPLSMMLLNRNYTVSVCHSK-------------TKDIGSMTRSSKIVV  198 (276)
T ss_dssp             HHHHHHHHHHHH-T--CCSCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT-------------CSCHHHHHHHSSEEE
T ss_pred             cHHHHHHHHHHh-C--cCCCEEEEEcCChHHHHHHHHHHHHCCCeEEEEeCC-------------cccHHHhhccCCEEE
Confidence            345666666554 3  8999999999985 8999999999999999999742             246778889999999


Q ss_pred             EcCCCcccCCHHHHhccCCCeEEEeccCC
Q psy4626         138 TATGNKNVVTREHMDKMKNGCVVCNMGHS  166 (542)
Q Consensus       138 ~atG~~~lI~~e~l~~mk~GailvnvG~g  166 (542)
                      .++|.+++++++.   +|+|++++++|..
T Consensus       199 ~Avg~p~~I~~~~---vk~GavVIDvgi~  224 (276)
T 3ngx_A          199 VAVGRPGFLNREM---VTPGSVVIDVGIN  224 (276)
T ss_dssp             ECSSCTTCBCGGG---CCTTCEEEECCCE
T ss_pred             ECCCCCccccHhh---ccCCcEEEEeccC
Confidence            9999999998644   6999999999964

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=98.58  E-value=4.1e-07  Score=91.96  Aligned_cols=223  Identities=17%  Similarity=0.194  Sum_probs=137.7

Q ss_pred             ccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCcee-eCHHHHhcCCcEEEEcC-C-----------
Q psy4626          75 FGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV-VKLNEVIRTVDIVVTAT-G-----------  141 (542)
Q Consensus        75 l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v-~~l~e~l~~aDvVi~at-G-----------  141 (542)
                      +.|.+++|+|.-..-...++.|...|.+|.+...+...   ....|... ..+.+.++++|+++... |           
T Consensus         3 ~~~m~i~v~~~~~~~~~~~~~L~~~g~~v~~~~~~~~~---~~~~~~~~~~~~~~~~~~~d~ii~~~~~~~~~~~i~~~~   79 (293)
T 3d4o_A            3 LTGKHVVIIGGDARQLEIIRKLSTFDAKISLVGFDQLD---DGFIGVTKMRIDEVDWNTVDAILLPISGTNEAGKVDTIF   79 (293)
T ss_dssp             CTTCEEEEECBCHHHHHHHHHHHHTTCEEEEESCTTCC-----CTTCEEECGGGCCGGGCSEEECCTTCCCTTCBCCBSS
T ss_pred             ccCcEEEEECCCHHHHHHHHHHHhCCCEEEEecccccc---ccccccccccchHHHHhcCCEEEeccccccCCceeeccc
Confidence            56889999998888888899999999999886432110   11123322 23456678999998631 1           


Q ss_pred             --CcccCCHHHHhccCCCeEEEeccCCCcccCh-HhhcCCCcceeeeccceeeEecCCCCEEEEecCCCcccccCCCChh
Q psy4626         142 --NKNVVTREHMDKMKNGCVVCNMGHSNTEIDV-NSLRTPDLTWEKVRSQVDHVIWPDGKRIVLLAEGRLVNLSCSSLPS  218 (542)
Q Consensus       142 --~~~lI~~e~l~~mk~GailvnvG~g~~eid~-~aL~~~~l~v~~~~~~v~~y~~~dg~~I~LLa~GrLvnl~~~thp~  218 (542)
                        .+..++++.++.+++...+. +|.  +.+|+ +++..+++.+....         +.           ..     .|.
T Consensus        80 ~~~~~~~~~~~l~~~~~l~~i~-~G~--d~id~~~~~~~~gi~v~~~~---------~~-----------~~-----~~~  131 (293)
T 3d4o_A           80 SNESIVLTEEMIEKTPNHCVVY-SGI--SNTYLNQCMKKTNRTLVKLM---------ER-----------DD-----IAI  131 (293)
T ss_dssp             CSCCCBCCHHHHHTSCTTCEEE-ESS--CCHHHHHHHHHHTCEEEEGG---------GC-----------HH-----HHH
T ss_pred             ccCCccchHHHHHhCCCCCEEE-ecC--CCHHHHHHHHHcCCeEEEec---------CC-----------ce-----eee
Confidence              22246788999998887776 443  45665 55554333332210         00           00     001


Q ss_pred             HHHhhHHHHHHHHHHHHhcCCCCCCCCccccCChhhHHHHHHhcCCcccc----ccccccHHHHhhcCCC--CCCCC--C
Q psy4626         219 FVVSITACTQALALIELFNAPSGRYKSDVYLLPKKMDEYVASLHLPTFDA----HLTELSDEQAKYMGLN--KAGPF--K  290 (542)
Q Consensus       219 ~vmd~sfa~q~la~~~L~~~~~~~~~~gv~~lp~~~d~~VA~l~L~~lg~----~i~~lt~~~a~~lg~~--e~~p~--~  290 (542)
                       ....+.|..+++.+--+..  ..                  +..+++++    .+++...++++.+|+.  ..||.  +
T Consensus       132 -~~~~svae~a~~~~l~~~~--~~------------------l~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~dr~~~~  190 (293)
T 3d4o_A          132 -YNSIPTAEGTIMMAIQHTD--FT------------------IHGANVAVLGLGRVGMSVARKFAALGAKVKVGARESDL  190 (293)
T ss_dssp             -HHHHHHHHHHHHHHHHHCS--SC------------------STTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSHHH
T ss_pred             -eccHhHHHHHHHHHHHhcC--CC------------------CCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECCHHH
Confidence             1133555555543321110  01                  12233333    7888888888888873  22332  2


Q ss_pred             CCccccCCeeee---ehhhhcccCcEEEEccCCCCccCHhHHhcCCCCcEEEccCCCCccccc
Q psy4626         291 PSYYSMDGFSVV---KLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDV  350 (542)
Q Consensus       291 a~ea~mdG~~v~---~~~~a~~~~d~~~t~tg~~~vi~~~~~~~mk~gail~n~gh~~~Ei~~  350 (542)
                      .-++.-.|.++.   .++++++.+|+|+.++.. ++|+.+.|+.||+|++++|+++...++++
T Consensus       191 ~~~~~~~g~~~~~~~~l~~~l~~aDvVi~~~p~-~~i~~~~l~~mk~~~~lin~ar~~~~~~~  252 (293)
T 3d4o_A          191 LARIAEMGMEPFHISKAAQELRDVDVCINTIPA-LVVTANVLAEMPSHTFVIDLASKPGGTDF  252 (293)
T ss_dssp             HHHHHHTTSEEEEGGGHHHHTTTCSEEEECCSS-CCBCHHHHHHSCTTCEEEECSSTTCSBCH
T ss_pred             HHHHHHCCCeecChhhHHHHhcCCCEEEECCCh-HHhCHHHHHhcCCCCEEEEecCCCCCCCH
Confidence            222222365543   567889999999999975 78999999999999999999998877765

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}

Probab=98.58  E-value=1.7e-07  Score=95.94  Aligned_cols=187  Identities=16%  Similarity=0.226  Sum_probs=118.6

Q ss_pred             HHhcCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCCCcccChHhhcCCCcceeeeccceeeEecCCCCEEEEecCCC
Q psy4626         128 EVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIVLLAEGR  207 (542)
Q Consensus       128 e~l~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g~~eid~~aL~~~~l~v~~~~~~v~~y~~~dg~~I~LLa~Gr  207 (542)
                      +.++++|+++.....  -++++.++.+++-..+...|.|-+.+|++++.++++.+....                     
T Consensus        40 ~~~~~~d~~i~~~~~--~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gi~v~n~~---------------------   96 (307)
T 1wwk_A           40 ELVKDVEAIIVRSKP--KVTRRVIESAPKLKVIARAGVGLDNIDVEAAKEKGIEVVNAP---------------------   96 (307)
T ss_dssp             HHSTTCSEEEESSCS--CBCHHHHTTCTTCCEEEESSSCCTTBCHHHHHHHTCEEECCG---------------------
T ss_pred             HHhcCCEEEEEcCCC--CCCHHHHhhCCCCeEEEECCccccccCHHHHHhCCcEEEECC---------------------
Confidence            446889999864322  367788999999889999999988899888765444333221                     


Q ss_pred             cccccCCCChhHHHhh------HHHHHHHHHHHHhcCCCCCCCCccccCChhhHHHHHHhcCCcccc----ccccccHHH
Q psy4626         208 LVNLSCSSLPSFVVSI------TACTQALALIELFNAPSGRYKSDVYLLPKKMDEYVASLHLPTFDA----HLTELSDEQ  277 (542)
Q Consensus       208 Lvnl~~~thp~~vmd~------sfa~q~la~~~L~~~~~~~~~~gv~~lp~~~d~~VA~l~L~~lg~----~i~~lt~~~  277 (542)
                           .. ++..+-+.      +++.++.......+.  ++|.+.-. .+.       ++..+++|+    .|++..+++
T Consensus        97 -----g~-~~~~vAE~~~~~~L~~~R~~~~~~~~~~~--g~w~~~~~-~~~-------~l~g~~vgIiG~G~IG~~~A~~  160 (307)
T 1wwk_A           97 -----AA-SSRSVAELAVGLMFSVARKIAFADRKMRE--GVWAKKEA-MGI-------ELEGKTIGIIGFGRIGYQVAKI  160 (307)
T ss_dssp             -----GG-GHHHHHHHHHHHHHHHHTTHHHHHHHHTT--TCCCTTTC-CBC-------CCTTCEEEEECCSHHHHHHHHH
T ss_pred             -----CC-ChHHHHHHHHHHHHHHHhCHHHHHHHHHc--CCCCccCc-CCc-------ccCCceEEEEccCHHHHHHHHH
Confidence                 00 11111111      111111111122222  46753110 011       334456666    888888999


Q ss_pred             HhhcCCC--CCCCCCC-CccccCCeeeeehhhhcccCcEEEEcc----CCCCccCHhHHhcCCCCcEEEccCCCCccccc
Q psy4626         278 AKYMGLN--KAGPFKP-SYYSMDGFSVVKLNEVIRTVDIVVTAT----GNKNVVTREHMDKMKNGCVVCNMGHSNTEIDV  350 (542)
Q Consensus       278 a~~lg~~--e~~p~~a-~ea~mdG~~v~~~~~a~~~~d~~~t~t----g~~~vi~~~~~~~mk~gail~n~gh~~~Ei~~  350 (542)
                      ++.+|+.  ..||... ..+.-.|++..+++++++++|+|++++    .++++|+.+.|+.||+|++++|+|++.. +|-
T Consensus       161 l~~~G~~V~~~d~~~~~~~~~~~g~~~~~l~ell~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lin~arg~~-vd~  239 (307)
T 1wwk_A          161 ANALGMNILLYDPYPNEERAKEVNGKFVDLETLLKESDVVTIHVPLVESTYHLINEERLKLMKKTAILINTSRGPV-VDT  239 (307)
T ss_dssp             HHHTTCEEEEECSSCCHHHHHHTTCEECCHHHHHHHCSEEEECCCCSTTTTTCBCHHHHHHSCTTCEEEECSCGGG-BCH
T ss_pred             HHHCCCEEEEECCCCChhhHhhcCccccCHHHHHhhCCEEEEecCCChHHhhhcCHHHHhcCCCCeEEEECCCCcc-cCH
Confidence            9999983  2233322 233446788778999999999999954    3789999999999999999999999765 443


Q ss_pred             cccc
Q psy4626         351 NSLR  354 (542)
Q Consensus       351 ~~l~  354 (542)
                      .+|.
T Consensus       240 ~aL~  243 (307)
T 1wwk_A          240 NALV  243 (307)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4333

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1

Probab=98.56  E-value=2.3e-07  Score=97.21  Aligned_cols=110  Identities=19%  Similarity=0.300  Sum_probs=81.5

Q ss_pred             HHHHHHHHHHHHHhhcCc-cccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhh-hhcCCceeeCHHHHhc-C
Q psy4626          56 LYMCRESIIDSLKRSTDV-MFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQ-ACMDGFSVVKLNEVIR-T  132 (542)
Q Consensus        56 ~~g~~~s~~~ai~r~~~~-~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~-A~~~G~~v~~l~e~l~-~  132 (542)
                      .||.-..+.+.+++..+. .+.|++|+|+|+|++|+.+|+.|..+|++|+++|+++.+..+ +...|...++.++++. .
T Consensus       151 g~GV~~~~~~~~~~~~G~~~L~GktV~V~G~G~VG~~~A~~L~~~GakVvv~D~~~~~l~~~a~~~ga~~v~~~~ll~~~  230 (364)
T 1leh_A          151 AYGVYRGMKAAAKEAFGSDSLEGLAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAVSAAVAEEGADAVAPNAIYGVT  230 (364)
T ss_dssp             HHHHHHHHHHHHHHHHSSCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCCEECCGGGTTTCC
T ss_pred             hhHHHHHHHHHHHhhccccCCCcCEEEEECchHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCCEEEChHHHhccC
Confidence            344444444444443233 689999999999999999999999999999999999887653 3333666777777764 8


Q ss_pred             CcEEEEcCCCcccCCHHHHhccCCCeEEEeccCCC
Q psy4626         133 VDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSN  167 (542)
Q Consensus       133 aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g~  167 (542)
                      +|+++.|. ..++|+.+.++.++ ..++++.+.++
T Consensus       231 ~DIvip~a-~~~~I~~~~~~~lg-~~iV~e~An~p  263 (364)
T 1leh_A          231 CDIFAPCA-LGAVLNDFTIPQLK-AKVIAGSADNQ  263 (364)
T ss_dssp             CSEEEECS-CSCCBSTTHHHHCC-CSEECCSCSCC
T ss_pred             CcEeeccc-hHHHhCHHHHHhCC-CcEEEeCCCCC
Confidence            99999875 56688877788883 45677777665

>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A

Probab=98.56  E-value=9.9e-08  Score=100.91  Aligned_cols=216  Identities=13%  Similarity=0.111  Sum_probs=133.5

Q ss_pred             HHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCCCcccCh
Q psy4626          93 CQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDV  172 (542)
Q Consensus        93 A~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g~~eid~  172 (542)
                      ...++.+|.+|.++...+..          ...+.+.++++|+++.......-++++.++.+++-..|...|.|-+.+|+
T Consensus        60 ~~~l~~~g~~v~~~~~~~~~----------~~~l~~~l~~ad~li~~~~~~~~i~~~~l~~~p~Lk~I~~~g~G~d~iD~  129 (393)
T 2nac_A           60 RKYLESNGHTLVVTSDKDGP----------DSVFERELVDADVVISQPFWPAYLTPERIAKAKNLKLALTAGIGSDHVDL  129 (393)
T ss_dssp             HHHHHHTTCEEEEESCCSST----------TSHHHHHHTTCSEEEEBTTBCCCBCHHHHHHCTTCCEEEESSSCCTTBCH
T ss_pred             HHHHHhCCCEEEEecCCCCC----------HHHHHHhccCCCEEEEcCccCCCCCHHHHhhCCCCcEEEEcCccccccCH
Confidence            35677788887764211100          01134557899999875322235778899999999899999999888999


Q ss_pred             HhhcCCCcceeeeccceeeEecCCCCEEEEecCCCcccccCCCChhHHHh------hHHHHHHHHHHHHhcCCCCCCCCc
Q psy4626         173 NSLRTPDLTWEKVRSQVDHVIWPDGKRIVLLAEGRLVNLSCSSLPSFVVS------ITACTQALALIELFNAPSGRYKSD  246 (542)
Q Consensus       173 ~aL~~~~l~v~~~~~~v~~y~~~dg~~I~LLa~GrLvnl~~~thp~~vmd------~sfa~q~la~~~L~~~~~~~~~~g  246 (542)
                      ++...+++.+..+..                          . +...+-+      ++++.++.......+.  ++|...
T Consensus       130 ~aa~~~gI~V~n~~g--------------------------~-~~~~VAE~al~liL~~~R~~~~~~~~~~~--g~W~~~  180 (393)
T 2nac_A          130 QSAIDRNVTVAEVTY--------------------------C-NSISVAEHVVMMILSLVRNYLPSHEWARK--GGWNIA  180 (393)
T ss_dssp             HHHHHTTCEEEECTT--------------------------T-THHHHHHHHHHHHHHHHTTHHHHHHHHHT--TCCCHH
T ss_pred             HHHhcCCEEEEeCCC--------------------------c-ccHHHHHHHHHHHHHHHhccHHHHHHHHc--CCCCcc
Confidence            988765554443210                          0 0111111      1222222112222222  467431


Q ss_pred             cccCChhhHHHHHHhcCCcccc----ccccccHHHHhhcCCC--CCCCC--CCCccccCCeee-eehhhhcccCcEEEEc
Q psy4626         247 VYLLPKKMDEYVASLHLPTFDA----HLTELSDEQAKYMGLN--KAGPF--KPSYYSMDGFSV-VKLNEVIRTVDIVVTA  317 (542)
Q Consensus       247 v~~lp~~~d~~VA~l~L~~lg~----~i~~lt~~~a~~lg~~--e~~p~--~a~ea~mdG~~v-~~~~~a~~~~d~~~t~  317 (542)
                      -...+      --++..+++|+    .|++..+++++.+|+.  -.||.  +.-.+...|.+. .+++++++++|||++.
T Consensus       181 ~~~~~------~~~l~gktvGIIGlG~IG~~vA~~l~a~G~~V~~~d~~~~~~~~~~~~G~~~~~~l~ell~~aDvV~l~  254 (393)
T 2nac_A          181 DCVSH------AYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPESVEKELNLTWHATREDMYPVCDVVTLN  254 (393)
T ss_dssp             HHHTT------CCCCTTCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCCHHHHHHHTCEECSSHHHHGGGCSEEEEC
T ss_pred             ccccC------CccCCCCEEEEEeECHHHHHHHHHHHhCCCEEEEEcCCccchhhHhhcCceecCCHHHHHhcCCEEEEe
Confidence            00000      01345567776    8888899999999984  22443  222333457765 4789999999999994


Q ss_pred             ----cCCCCccCHhHHhcCCCCcEEEccCCCCccccccccc
Q psy4626         318 ----TGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLR  354 (542)
Q Consensus       318 ----tg~~~vi~~~~~~~mk~gail~n~gh~~~Ei~~~~l~  354 (542)
                          ..++++|+.+.|+.||+|++|+|+|++.. +|-++|.
T Consensus       255 ~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~-vde~aL~  294 (393)
T 2nac_A          255 CPLHPETEHMINDETLKLFKRGAYIVNTARGKL-CDRDAVA  294 (393)
T ss_dssp             SCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGG-BCHHHHH
T ss_pred             cCCchHHHHHhhHHHHhhCCCCCEEEECCCchH-hhHHHHH
Confidence                46789999999999999999999999865 3433444

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=98.56  E-value=1.4e-07  Score=96.91  Aligned_cols=118  Identities=12%  Similarity=0.124  Sum_probs=88.1

Q ss_pred             HHHHHHHHhh----cCccccCcEEEEEcCChhHHHHHHHHHhC--CCEEEEEeCCchhhhhhhcCCce-eeCHHH-----
Q psy4626          61 ESIIDSLKRS----TDVMFGGKQVVLCGYGEVGKGCCQSLKGL--GCVIYITEIDPICALQACMDGFS-VVKLNE-----  128 (542)
Q Consensus        61 ~s~~~ai~r~----~~~~l~GktVvViG~G~IG~~vA~~l~~~--Ga~Viv~d~dp~r~~~A~~~G~~-v~~l~e-----  128 (542)
                      ...|+++.+.    .+ . +|++|+|+|.|.||+.+++.++.+  |++|++++.++.+...+...|++ +++..+     
T Consensus       153 ~ta~~al~~~~~~~~~-~-~g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~  230 (344)
T 2h6e_A          153 TTSMGAIRQALPFISK-F-AEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFALELGADYVSEMKDAESLI  230 (344)
T ss_dssp             HHHHHHHHHHHHHHTT-C-SSCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHTCSEEECHHHHHHHH
T ss_pred             HHHHHHHHhhhhcccC-C-CCCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHHhCCCEEeccccchHHH
Confidence            3456676654    13 3 899999999999999999999999  99999999999888777777875 444322     


Q ss_pred             -Hhc---CCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCCC--cccChHhhcCCCcc
Q psy4626         129 -VIR---TVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSN--TEIDVNSLRTPDLT  181 (542)
Q Consensus       129 -~l~---~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g~--~eid~~aL~~~~l~  181 (542)
                       .+.   ++|+||+++|....+ .+.++.+++++.++.+|...  .+++...+..++++
T Consensus       231 ~~~~~g~g~D~vid~~g~~~~~-~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~  288 (344)
T 2h6e_A          231 NKLTDGLGASIAIDLVGTEETT-YNLGKLLAQEGAIILVGMEGKRVSLEAFDTAVWNKK  288 (344)
T ss_dssp             HHHHTTCCEEEEEESSCCHHHH-HHHHHHEEEEEEEEECCCCSSCCCCCHHHHHHTTCE
T ss_pred             HHhhcCCCccEEEECCCChHHH-HHHHHHhhcCCEEEEeCCCCCCcccCHHHHhhCCcE
Confidence             122   689999999986566 47899999999999998653  23444444333333

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=98.56  E-value=1.7e-07  Score=96.18  Aligned_cols=119  Identities=18%  Similarity=0.169  Sum_probs=88.6

Q ss_pred             HHHHHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce-eeCH-----HHHh----
Q psy4626          61 ESIIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVKL-----NEVI----  130 (542)
Q Consensus        61 ~s~~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~-v~~l-----~e~l----  130 (542)
                      ...|+++.+.  ...+|++|+|+|.|.||+.+++.++.+|++|+++++++.+...+...|++ +++.     .+.+    
T Consensus       151 ~ta~~~l~~~--~~~~g~~VlV~GaG~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~~d~~~~~~~~~~~~~~  228 (339)
T 1rjw_A          151 VTTYKALKVT--GAKPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKELGADLVVNPLKEDAAKFMKEKV  228 (339)
T ss_dssp             HHHHHHHHHH--TCCTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCSEEECTTTSCHHHHHHHHH
T ss_pred             HHHHHHHHhc--CCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHCCCCEEecCCCccHHHHHHHHh
Confidence            3456676665  24579999999999999999999999999999999999888777777865 3332     1222    


Q ss_pred             cCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCCCc--ccChHhhcCCCcce
Q psy4626         131 RTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNT--EIDVNSLRTPDLTW  182 (542)
Q Consensus       131 ~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g~~--eid~~aL~~~~l~v  182 (542)
                      .++|++|+++|....+ .+.++.+++++.++.+|....  .++...+..+++++
T Consensus       229 ~~~d~vid~~g~~~~~-~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i  281 (339)
T 1rjw_A          229 GGVHAAVVTAVSKPAF-QSAYNSIRRGGACVLVGLPPEEMPIPIFDTVLNGIKI  281 (339)
T ss_dssp             SSEEEEEESSCCHHHH-HHHHHHEEEEEEEEECCCCSSEEEEEHHHHHHTTCEE
T ss_pred             CCCCEEEECCCCHHHH-HHHHHHhhcCCEEEEecccCCCCccCHHHHHhCCcEE
Confidence            5799999999976666 478999999999999997643  33433333334433

>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans}

Probab=98.56  E-value=1.2e-06  Score=90.54  Aligned_cols=185  Identities=18%  Similarity=0.230  Sum_probs=114.9

Q ss_pred             HHhcCCcEEEEcCCCcccCCHHHHhccCC--CeEEEeccCCCcccChHhhcCCCcceeeeccceeeEecCCCCEEEEecC
Q psy4626         128 EVIRTVDIVVTATGNKNVVTREHMDKMKN--GCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIVLLAE  205 (542)
Q Consensus       128 e~l~~aDvVi~atG~~~lI~~e~l~~mk~--GailvnvG~g~~eid~~aL~~~~l~v~~~~~~v~~y~~~dg~~I~LLa~  205 (542)
                      +.++++|+++....+  -++++.++.+++  -..+...|.|-+.+|++++..+++.+.....                  
T Consensus        41 ~~~~~~d~~i~~~~~--~~~~~~l~~~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~p~------------------  100 (331)
T 1xdw_A           41 EMAAGFDAVILRGNC--FANKQNLDIYKKLGVKYILTRTAGTDHIDKEYAKELGFPMAFVPR------------------  100 (331)
T ss_dssp             HTTTTCSEEEECTTC--CBCHHHHHHHHHHTCCEEEESSSCCTTBCHHHHHHTTCCEECCCC------------------
T ss_pred             HHhcCCeEEEEeCCC--CCCHHHHhhCcccCceEEEEccccccccCHHHHHhCCcEEEeCCC------------------
Confidence            346889999875322  367788888876  6778888888888999888765554433210                  


Q ss_pred             CCcccccCCCChhHHHhhHH------HHHHHHHHHHhcCCCCCCC--CccccCChhhHHHHHHhcCCcccc----ccccc
Q psy4626         206 GRLVNLSCSSLPSFVVSITA------CTQALALIELFNAPSGRYK--SDVYLLPKKMDEYVASLHLPTFDA----HLTEL  273 (542)
Q Consensus       206 GrLvnl~~~thp~~vmd~sf------a~q~la~~~L~~~~~~~~~--~gv~~lp~~~d~~VA~l~L~~lg~----~i~~l  273 (542)
                               .++..+-+..+      +.++-......+.  ++|.  .+.  ...       ++..+++|+    .|++.
T Consensus       101 ---------~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~--g~w~~~~~~--~~~-------~l~g~~vgIiG~G~IG~~  160 (331)
T 1xdw_A          101 ---------YSPNAIAELAVTQAMMLLRHTAYTTSRTAK--KNFKVDAFM--FSK-------EVRNCTVGVVGLGRIGRV  160 (331)
T ss_dssp             ---------CCHHHHHHHHHHHHHHHHTTHHHHHHHHTT--TCCCCCSTT--CCC-------CGGGSEEEEECCSHHHHH
T ss_pred             ---------CCcHHHHHHHHHHHHHHHhCHHHHHHHHHc--CCCccccCc--Ccc-------CCCCCEEEEECcCHHHHH
Confidence                     01111111111      1111111122222  4553  111  011       234456666    88999


Q ss_pred             cHHHHhhcCCC--CCCCCCCCccccCCeeeeehhhhcccCcEEEE----ccCCCCccCHhHHhcCCCCcEEEccCCCCcc
Q psy4626         274 SDEQAKYMGLN--KAGPFKPSYYSMDGFSVVKLNEVIRTVDIVVT----ATGNKNVVTREHMDKMKNGCVVCNMGHSNTE  347 (542)
Q Consensus       274 t~~~a~~lg~~--e~~p~~a~ea~mdG~~v~~~~~a~~~~d~~~t----~tg~~~vi~~~~~~~mk~gail~n~gh~~~E  347 (542)
                      .+++++++|+.  ..||...-++ -++....+++++++++|+|++    +..++++|+.+.|+.||+|++++|+|++.. 
T Consensus       161 ~A~~l~~~G~~V~~~d~~~~~~~-~~~~~~~~l~ell~~aDvV~~~~p~t~~t~~li~~~~l~~mk~ga~lin~srg~~-  238 (331)
T 1xdw_A          161 AAQIFHGMGATVIGEDVFEIKGI-EDYCTQVSLDEVLEKSDIITIHAPYIKENGAVVTRDFLKKMKDGAILVNCARGQL-  238 (331)
T ss_dssp             HHHHHHHTTCEEEEECSSCCCSC-TTTCEECCHHHHHHHCSEEEECCCCCTTTCCSBCHHHHHTSCTTEEEEECSCGGG-
T ss_pred             HHHHHHHCCCEEEEECCCccHHH-HhccccCCHHHHHhhCCEEEEecCCchHHHHHhCHHHHhhCCCCcEEEECCCccc-
Confidence            99999999983  2233222111 133555689999999999999    346789999999999999999999999876 


Q ss_pred             ccccccc
Q psy4626         348 IDVNSLR  354 (542)
Q Consensus       348 i~~~~l~  354 (542)
                      +|-++|.
T Consensus       239 vd~~aL~  245 (331)
T 1xdw_A          239 VDTEAVI  245 (331)
T ss_dssp             BCHHHHH
T ss_pred             ccHHHHH
Confidence            3444444

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens}

Probab=98.55  E-value=2.7e-07  Score=95.63  Aligned_cols=187  Identities=12%  Similarity=0.186  Sum_probs=120.7

Q ss_pred             HHhcCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCCCcccChHhhcCCCcceeeeccceeeEecCCCCEEEEecCCC
Q psy4626         128 EVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIVLLAEGR  207 (542)
Q Consensus       128 e~l~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g~~eid~~aL~~~~l~v~~~~~~v~~y~~~dg~~I~LLa~Gr  207 (542)
                      +.++++|+++....+  -++++.++.+++-..+...|.|-+.+|+++..++++.+....                     
T Consensus        63 ~~~~~~d~li~~~~~--~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~p---------------------  119 (335)
T 2g76_A           63 AELQDCEGLIVRSAT--KVTADVINAAEKLQVVGRAGTGVDNVDLEAATRKGILVMNTP---------------------  119 (335)
T ss_dssp             HHGGGCSEEEECSSS--CBCHHHHHHCSSCCEEEESSSSCTTBCHHHHHHHTCEEECCS---------------------
T ss_pred             HHhcCceEEEEcCCC--CCCHHHHhhCCCCcEEEECCCCcchhChHHHHhCCeEEEECC---------------------
Confidence            446889999874322  367788999998889999999988899887765443332211                     


Q ss_pred             cccccCCCChhHHHhh------HHHHHHHHHHHHhcCCCCCCCCccccCChhhHHHHHHhcCCcccc----ccccccHHH
Q psy4626         208 LVNLSCSSLPSFVVSI------TACTQALALIELFNAPSGRYKSDVYLLPKKMDEYVASLHLPTFDA----HLTELSDEQ  277 (542)
Q Consensus       208 Lvnl~~~thp~~vmd~------sfa~q~la~~~L~~~~~~~~~~gv~~lp~~~d~~VA~l~L~~lg~----~i~~lt~~~  277 (542)
                           . .++..+-+.      +++.++.......+.  ++|...-. .+.       ++..+++|+    .|++..+++
T Consensus       120 -----~-~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~--g~W~~~~~-~~~-------~l~g~tvgIIGlG~IG~~vA~~  183 (335)
T 2g76_A          120 -----N-GNSLSAAELTCGMIMCLARQIPQATASMKD--GKWERKKF-MGT-------ELNGKTLGILGLGRIGREVATR  183 (335)
T ss_dssp             -----S-TTHHHHHHHHHHHHHHHHHTHHHHHHHHHT--TCCCTGGG-CBC-------CCTTCEEEEECCSHHHHHHHHH
T ss_pred             -----C-ccchHHHHHHHHHHHHHHhchHHHHHHHHc--CCCCccCC-CCc-------CCCcCEEEEEeECHHHHHHHHH
Confidence                 0 011111111      222222211222232  46754211 011       344566666    888889999


Q ss_pred             HhhcCCC--CCCCCCCC-ccccCCeeeeehhhhcccCcEEEEc----cCCCCccCHhHHhcCCCCcEEEccCCCCccccc
Q psy4626         278 AKYMGLN--KAGPFKPS-YYSMDGFSVVKLNEVIRTVDIVVTA----TGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDV  350 (542)
Q Consensus       278 a~~lg~~--e~~p~~a~-ea~mdG~~v~~~~~a~~~~d~~~t~----tg~~~vi~~~~~~~mk~gail~n~gh~~~Ei~~  350 (542)
                      ++.+|+.  -.||...- .+...|++..+++++++++|+|+++    ..++++|+.+.|+.||+|++++|+|++.+ +|-
T Consensus       184 l~~~G~~V~~~d~~~~~~~~~~~g~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~arg~v-vd~  262 (335)
T 2g76_A          184 MQSFGMKTIGYDPIISPEVSASFGVQQLPLEEIWPLCDFITVHTPLLPSTTGLLNDNTFAQCKKGVRVVNCARGGI-VDE  262 (335)
T ss_dssp             HHTTTCEEEEECSSSCHHHHHHTTCEECCHHHHGGGCSEEEECCCCCTTTTTSBCHHHHTTSCTTEEEEECSCTTS-BCH
T ss_pred             HHHCCCEEEEECCCcchhhhhhcCceeCCHHHHHhcCCEEEEecCCCHHHHHhhCHHHHhhCCCCcEEEECCCccc-cCH
Confidence            9999984  23443322 3445687777899999999999993    35789999999999999999999999875 453


Q ss_pred             cccc
Q psy4626         351 NSLR  354 (542)
Q Consensus       351 ~~l~  354 (542)
                      .+|.
T Consensus       263 ~aL~  266 (335)
T 2g76_A          263 GALL  266 (335)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4343

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=98.53  E-value=6e-07  Score=93.34  Aligned_cols=103  Identities=19%  Similarity=0.182  Sum_probs=81.2

Q ss_pred             HHHHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCCC-EEEEEeCCchhhhhhhcCCce-eeCHH-------HHh--
Q psy4626          62 SIIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMDGFS-VVKLN-------EVI--  130 (542)
Q Consensus        62 s~~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga-~Viv~d~dp~r~~~A~~~G~~-v~~l~-------e~l--  130 (542)
                      ..|+++.+.. ...+|++|+|+|.|+||+.+++.++.+|+ +|++++.++.+...+...|++ +++..       +.+  
T Consensus       182 ta~~~l~~~~-~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~v~~  260 (376)
T 1e3i_A          182 SGYGAAINTA-KVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCLNPRELDKPVQDVITE  260 (376)
T ss_dssp             HHHHHHHTTS-CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHH
T ss_pred             HHHHHHHHhc-CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCcEEEccccccchHHHHHHH
Confidence            3455554332 24579999999999999999999999999 899999999998888888875 33322       222  


Q ss_pred             ---cCCcEEEEcCCCcccCCHHHHhccCCC-eEEEeccCC
Q psy4626         131 ---RTVDIVVTATGNKNVVTREHMDKMKNG-CVVCNMGHS  166 (542)
Q Consensus       131 ---~~aDvVi~atG~~~lI~~e~l~~mk~G-ailvnvG~g  166 (542)
                         .++|+||+++|....+ .+.++.++++ +.++.+|..
T Consensus       261 ~~~~g~Dvvid~~G~~~~~-~~~~~~l~~~~G~iv~~G~~  299 (376)
T 1e3i_A          261 LTAGGVDYSLDCAGTAQTL-KAAVDCTVLGWGSCTVVGAK  299 (376)
T ss_dssp             HHTSCBSEEEESSCCHHHH-HHHHHTBCTTTCEEEECCCS
T ss_pred             HhCCCccEEEECCCCHHHH-HHHHHHhhcCCCEEEEECCC
Confidence               2689999999986666 3789999999 999999864

>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}

Probab=98.52  E-value=4.4e-07  Score=91.74  Aligned_cols=91  Identities=23%  Similarity=0.429  Sum_probs=75.4

Q ss_pred             HHHHHHHHHHhhcCccccCcEEEEEcCCh-hHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCCcEEE
Q psy4626          59 CRESIIDSLKRSTDVMFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVV  137 (542)
Q Consensus        59 ~~~s~~~ai~r~~~~~l~GktVvViG~G~-IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~aDvVi  137 (542)
                      +..+++..+.+ .+..+.|++++|+|.|. +|+.+|..|...|++|++++..             ..++++.++.||+||
T Consensus       143 Tp~gv~~lL~~-~~i~l~Gk~vvVvGrs~iVG~p~A~lL~~~gAtVtv~h~~-------------t~~L~~~~~~ADIVI  208 (285)
T 3p2o_A          143 TPLGVMKLLKA-YEIDLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIK-------------TKDLSLYTRQADLII  208 (285)
T ss_dssp             HHHHHHHHHHH-TTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT-------------CSCHHHHHTTCSEEE
T ss_pred             CHHHHHHHHHH-hCCCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCC-------------chhHHHHhhcCCEEE
Confidence            44556665444 45789999999999987 7999999999999999999742             235778899999999


Q ss_pred             EcCCCcccCCHHHHhccCCCeEEEeccCC
Q psy4626         138 TATGNKNVVTREHMDKMKNGCVVCNMGHS  166 (542)
Q Consensus       138 ~atG~~~lI~~e~l~~mk~GailvnvG~g  166 (542)
                      .++|.+++|+++   .+|+|++++++|..
T Consensus       209 ~Avg~p~~I~~~---~vk~GavVIDVgi~  234 (285)
T 3p2o_A          209 VAAGCVNLLRSD---MVKEGVIVVDVGIN  234 (285)
T ss_dssp             ECSSCTTCBCGG---GSCTTEEEEECCCE
T ss_pred             ECCCCCCcCCHH---HcCCCeEEEEeccC
Confidence            999999999864   46999999999964

>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}

Probab=98.52  E-value=4e-07  Score=92.06  Aligned_cols=92  Identities=26%  Similarity=0.398  Sum_probs=75.5

Q ss_pred             HHHHHHHHHHhhcCccccCcEEEEEcCCh-hHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCCcEEE
Q psy4626          59 CRESIIDSLKRSTDVMFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVV  137 (542)
Q Consensus        59 ~~~s~~~ai~r~~~~~l~GktVvViG~G~-IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~aDvVi  137 (542)
                      +-.+++..+.+ .+..+.|++++|+|.|. +|+.+|..|...|++|++++..             ..++++.++.||+||
T Consensus       144 Tp~gv~~lL~~-~~i~l~Gk~vvVvGrs~iVG~plA~lL~~~gAtVtv~hs~-------------T~~L~~~~~~ADIVI  209 (286)
T 4a5o_A          144 TPKGIMTLLAS-TGADLYGMDAVVVGASNIVGRPMALELLLGGCTVTVTHRF-------------TRDLADHVSRADLVV  209 (286)
T ss_dssp             HHHHHHHHHHH-TTCCCTTCEEEEECTTSTTHHHHHHHHHHTTCEEEEECTT-------------CSCHHHHHHTCSEEE
T ss_pred             CHHHHHHHHHH-hCCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCC-------------CcCHHHHhccCCEEE
Confidence            34556665444 45789999999999876 8999999999999999999742             235778889999999


Q ss_pred             EcCCCcccCCHHHHhccCCCeEEEeccCCC
Q psy4626         138 TATGNKNVVTREHMDKMKNGCVVCNMGHSN  167 (542)
Q Consensus       138 ~atG~~~lI~~e~l~~mk~GailvnvG~g~  167 (542)
                      .++|.+++++++.   +|+|++++++|...
T Consensus       210 ~Avg~p~~I~~~~---vk~GavVIDvgi~~  236 (286)
T 4a5o_A          210 VAAGKPGLVKGEW---IKEGAIVIDVGINR  236 (286)
T ss_dssp             ECCCCTTCBCGGG---SCTTCEEEECCSCS
T ss_pred             ECCCCCCCCCHHH---cCCCeEEEEecccc
Confidence            9999999998644   69999999999753

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=98.51  E-value=1.3e-07  Score=97.82  Aligned_cols=121  Identities=21%  Similarity=0.211  Sum_probs=87.7

Q ss_pred             HHHHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCCCE-EEEEeCCchhhhhhhcCCceee-------CHH---HHh
Q psy4626          62 SIIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCV-IYITEIDPICALQACMDGFSVV-------KLN---EVI  130 (542)
Q Consensus        62 s~~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga~-Viv~d~dp~r~~~A~~~G~~v~-------~l~---e~l  130 (542)
                      ..|+++.++  ...+|++|+|+|.|.+|+.+++.++.+|++ |++++.++.+...+...+..+.       +.+   +.+
T Consensus       167 ta~~~l~~~--~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~v  244 (363)
T 3m6i_A          167 VALAGLQRA--GVRLGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFAKEICPEVVTHKVERLSAEESAKKI  244 (363)
T ss_dssp             HHHHHHHHH--TCCTTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHCTTCEEEECCSCCHHHHHHHH
T ss_pred             HHHHHHHHc--CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhchhcccccccccchHHHHHHH
Confidence            456676554  245799999999999999999999999997 9999999988776655431211       111   111


Q ss_pred             ------cCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCCC--cccChHhhcCCCcceeee
Q psy4626         131 ------RTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSN--TEIDVNSLRTPDLTWEKV  185 (542)
Q Consensus       131 ------~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g~--~eid~~aL~~~~l~v~~~  185 (542)
                            .++|++++++|....+. ..++.+++++.++.+|...  ..++...+..+++++.+.
T Consensus       245 ~~~t~g~g~Dvvid~~g~~~~~~-~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~i~g~  306 (363)
T 3m6i_A          245 VESFGGIEPAVALECTGVESSIA-AAIWAVKFGGKVFVIGVGKNEIQIPFMRASVREVDLQFQ  306 (363)
T ss_dssp             HHHTSSCCCSEEEECSCCHHHHH-HHHHHSCTTCEEEECCCCCSCCCCCHHHHHHHTCEEEEC
T ss_pred             HHHhCCCCCCEEEECCCChHHHH-HHHHHhcCCCEEEEEccCCCCccccHHHHHhcCcEEEEc
Confidence                  37999999999876664 7899999999999998764  345555554444544443

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=98.50  E-value=2.8e-07  Score=95.53  Aligned_cols=118  Identities=17%  Similarity=0.113  Sum_probs=86.7

Q ss_pred             HHHHHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce-eeC-----HHHHh----
Q psy4626          61 ESIIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVK-----LNEVI----  130 (542)
Q Consensus        61 ~s~~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~-v~~-----l~e~l----  130 (542)
                      ...|+++.+.. ...+|++|+|+|.|.||..+++.++.+|++|++++.++.+...+...|++ +++     ..+.+    
T Consensus       175 ~ta~~al~~~~-~~~~g~~VlV~G~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~v~~~~  253 (363)
T 3uog_A          175 LTAWFALVEKG-HLRAGDRVVVQGTGGVALFGLQIAKATGAEVIVTSSSREKLDRAFALGADHGINRLEEDWVERVYALT  253 (363)
T ss_dssp             HHHHHHHTTTT-CCCTTCEEEEESSBHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHH
T ss_pred             HHHHHHHHHhc-CCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCchhHHHHHHcCCCEEEcCCcccHHHHHHHHh
Confidence            34566764332 24589999999999999999999999999999999999888878777875 332     22221    


Q ss_pred             --cCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCCC---cccChHhhcCCCcc
Q psy4626         131 --RTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSN---TEIDVNSLRTPDLT  181 (542)
Q Consensus       131 --~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g~---~eid~~aL~~~~l~  181 (542)
                        .++|++++++|. ..+ .+.++.+++++.++.+|...   ..++...+..++++
T Consensus       254 ~g~g~D~vid~~g~-~~~-~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~  307 (363)
T 3uog_A          254 GDRGADHILEIAGG-AGL-GQSLKAVAPDGRISVIGVLEGFEVSGPVGPLLLKSPV  307 (363)
T ss_dssp             TTCCEEEEEEETTS-SCH-HHHHHHEEEEEEEEEECCCSSCEECCBTTHHHHTCCE
T ss_pred             CCCCceEEEECCCh-HHH-HHHHHHhhcCCEEEEEecCCCcccCcCHHHHHhCCcE
Confidence              279999999984 445 47899999999999998653   24444444333333

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=98.50  E-value=5.7e-07  Score=93.40  Aligned_cols=103  Identities=19%  Similarity=0.172  Sum_probs=81.0

Q ss_pred             HHHHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCCC-EEEEEeCCchhhhhhhcCCce-eeCH-------HHHh--
Q psy4626          62 SIIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMDGFS-VVKL-------NEVI--  130 (542)
Q Consensus        62 s~~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga-~Viv~d~dp~r~~~A~~~G~~-v~~l-------~e~l--  130 (542)
                      ..|+++.+.. ...+|++|+|+|.|.||+.+++.++.+|+ +|++++.++.+...+...|++ +++.       .+.+  
T Consensus       178 ta~~~l~~~~-~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~i~~  256 (373)
T 1p0f_A          178 TGYGAAVNTA-KVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATECLNPKDYDKPIYEVICE  256 (373)
T ss_dssp             HHHHHHHTTT-CCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHH
T ss_pred             HHHHHHHhcc-CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCcEEEecccccchHHHHHHH
Confidence            3455554332 24579999999999999999999999999 899999999998888888875 3332       2222  


Q ss_pred             ---cCCcEEEEcCCCcccCCHHHHhccCCC-eEEEeccCC
Q psy4626         131 ---RTVDIVVTATGNKNVVTREHMDKMKNG-CVVCNMGHS  166 (542)
Q Consensus       131 ---~~aDvVi~atG~~~lI~~e~l~~mk~G-ailvnvG~g  166 (542)
                         .++|+||+++|....+ .+.++.++++ +.++.+|..
T Consensus       257 ~t~gg~Dvvid~~g~~~~~-~~~~~~l~~~~G~iv~~G~~  295 (373)
T 1p0f_A          257 KTNGGVDYAVECAGRIETM-MNALQSTYCGSGVTVVLGLA  295 (373)
T ss_dssp             HTTSCBSEEEECSCCHHHH-HHHHHTBCTTTCEEEECCCC
T ss_pred             HhCCCCCEEEECCCCHHHH-HHHHHHHhcCCCEEEEEccC
Confidence               2689999999986666 4789999999 999999865

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}

Probab=98.50  E-value=3.3e-07  Score=93.92  Aligned_cols=185  Identities=17%  Similarity=0.212  Sum_probs=119.4

Q ss_pred             HHhcCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCCCcccChHhhcCCCcceeeeccceeeEecCCCCEEEEecCCC
Q psy4626         128 EVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIVLLAEGR  207 (542)
Q Consensus       128 e~l~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g~~eid~~aL~~~~l~v~~~~~~v~~y~~~dg~~I~LLa~Gr  207 (542)
                      +.++++|+++.....  -++++.++.+++-..+...|.|-+.+|++++.++++.+....                     
T Consensus        42 ~~~~~~d~~i~~~~~--~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gi~v~n~~---------------------   98 (313)
T 2ekl_A           42 NIIGNYDIIVVRSRT--KVTKDVIEKGKKLKIIARAGIGLDNIDTEEAEKRNIKVVYAP---------------------   98 (313)
T ss_dssp             HHGGGCSEEEECSSS--CBCHHHHHHCTTCCEEEECSSCCTTBCHHHHHHTTCEEECCT---------------------
T ss_pred             HHhcCCeEEEEcCCC--CCCHHHHhhCCCCeEEEEcCCCCCccCHHHHHhCCeEEEeCC---------------------
Confidence            456889998875322  367788999998889999999988899988775544333221                     


Q ss_pred             cccccCCCChhHHHh------hHHHHHHHHHHHHhcCCCCCCCCccccCChhhHHHHHHhcCCcccc----ccccccHHH
Q psy4626         208 LVNLSCSSLPSFVVS------ITACTQALALIELFNAPSGRYKSDVYLLPKKMDEYVASLHLPTFDA----HLTELSDEQ  277 (542)
Q Consensus       208 Lvnl~~~thp~~vmd------~sfa~q~la~~~L~~~~~~~~~~gv~~lp~~~d~~VA~l~L~~lg~----~i~~lt~~~  277 (542)
                           .. ++..+-+      ++++.++.......+.  ++|...   .+.       ++..+++|+    .|++..+++
T Consensus        99 -----g~-~~~~vAE~~~~~~L~~~R~~~~~~~~~~~--g~w~~~---~~~-------~l~g~~vgIIG~G~IG~~~A~~  160 (313)
T 2ekl_A           99 -----GA-STDSAVELTIGLMIAAARKMYTSMALAKS--GIFKKI---EGL-------ELAGKTIGIVGFGRIGTKVGII  160 (313)
T ss_dssp             -----TT-THHHHHHHHHHHHHHHHHTHHHHHHHHHT--TCCCCC---CCC-------CCTTCEEEEESCSHHHHHHHHH
T ss_pred             -----CC-CchHHHHHHHHHHHHHHhCHHHHHHHHHc--CCCCCC---CCC-------CCCCCEEEEEeeCHHHHHHHHH
Confidence                 00 1111111      1222222222222222  467411   111       234456665    888888999


Q ss_pred             HhhcCCC--CCCCCCC-CccccCCeeeeehhhhcccCcEEEEcc----CCCCccCHhHHhcCCCCcEEEccCCCCccccc
Q psy4626         278 AKYMGLN--KAGPFKP-SYYSMDGFSVVKLNEVIRTVDIVVTAT----GNKNVVTREHMDKMKNGCVVCNMGHSNTEIDV  350 (542)
Q Consensus       278 a~~lg~~--e~~p~~a-~ea~mdG~~v~~~~~a~~~~d~~~t~t----g~~~vi~~~~~~~mk~gail~n~gh~~~Ei~~  350 (542)
                      ++.+|+.  ..||... .++.-.|++..+++++++++|+|++++    .++++|+.+.|+.||+|++++|+|+++. +|-
T Consensus       161 l~~~G~~V~~~d~~~~~~~~~~~g~~~~~l~ell~~aDvVvl~~P~~~~t~~li~~~~l~~mk~ga~lIn~arg~~-vd~  239 (313)
T 2ekl_A          161 ANAMGMKVLAYDILDIREKAEKINAKAVSLEELLKNSDVISLHVTVSKDAKPIIDYPQFELMKDNVIIVNTSRAVA-VNG  239 (313)
T ss_dssp             HHHTTCEEEEECSSCCHHHHHHTTCEECCHHHHHHHCSEEEECCCCCTTSCCSBCHHHHHHSCTTEEEEESSCGGG-BCH
T ss_pred             HHHCCCEEEEECCCcchhHHHhcCceecCHHHHHhhCCEEEEeccCChHHHHhhCHHHHhcCCCCCEEEECCCCcc-cCH
Confidence            9999983  2233222 234456777778999999999999954    3889999999999999999999999765 454


Q ss_pred             cccc
Q psy4626         351 NSLR  354 (542)
Q Consensus       351 ~~l~  354 (542)
                      .+|.
T Consensus       240 ~aL~  243 (313)
T 2ekl_A          240 KALL  243 (313)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4444

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=98.49  E-value=5.5e-07  Score=94.33  Aligned_cols=103  Identities=24%  Similarity=0.306  Sum_probs=81.8

Q ss_pred             HHHHHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCCC-EEEEEeCCchhhhhhhcCCceeeCH------HHHh---
Q psy4626          61 ESIIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMDGFSVVKL------NEVI---  130 (542)
Q Consensus        61 ~s~~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga-~Viv~d~dp~r~~~A~~~G~~v~~l------~e~l---  130 (542)
                      ...|+++.++  ...+|++|+|+|.|.||+.+++.++.+|+ +|++++.++.|+..+...|+++++.      .+.+   
T Consensus       172 ~ta~~al~~~--~~~~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~~lGa~~i~~~~~~~~~~~v~~~  249 (398)
T 1kol_A          172 PTGYHGAVTA--GVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFEIADLSLDTPLHEQIAAL  249 (398)
T ss_dssp             HHHHHHHHHT--TCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCEEEETTSSSCHHHHHHHH
T ss_pred             HHHHHHHHHc--CCCCCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHcCCcEEccCCcchHHHHHHHH
Confidence            3456777644  34589999999999999999999999999 8999999999988888888875432      2222   


Q ss_pred             ---cCCcEEEEcCCCcc---------------cCCHHHHhccCCCeEEEeccCC
Q psy4626         131 ---RTVDIVVTATGNKN---------------VVTREHMDKMKNGCVVCNMGHS  166 (542)
Q Consensus       131 ---~~aDvVi~atG~~~---------------lI~~e~l~~mk~GailvnvG~g  166 (542)
                         .++|+||+++|...               .+ .+.++.+++++.++.+|..
T Consensus       250 t~g~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~G~iv~~G~~  302 (398)
T 1kol_A          250 LGEPEVDCAVDAVGFEARGHGHEGAKHEAPATVL-NSLMQVTRVAGKIGIPGLY  302 (398)
T ss_dssp             HSSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHH-HHHHHHEEEEEEEEECSCC
T ss_pred             hCCCCCCEEEECCCCcccccccccccccchHHHH-HHHHHHHhcCCEEEEeccc
Confidence               26899999998653               34 4788999999999999864

>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*

Probab=98.49  E-value=3.2e-07  Score=94.36  Aligned_cols=105  Identities=21%  Similarity=0.276  Sum_probs=79.1

Q ss_pred             HHHHHHHHHHhh--------cCccccCcEEEEEcCCh-hHHHHHHHHHhCCCEEEEEeCCchhhh-hhhcCCc---ee--
Q psy4626          59 CRESIIDSLKRS--------TDVMFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICAL-QACMDGF---SV--  123 (542)
Q Consensus        59 ~~~s~~~ai~r~--------~~~~l~GktVvViG~G~-IG~~vA~~l~~~Ga~Viv~d~dp~r~~-~A~~~G~---~v--  123 (542)
                      +..+++.-+.+.        .+..+.|++|+|+|.|. +|+.+|+.|.+.|++|++++++..+.. .+...+.   ..  
T Consensus       151 Tp~a~v~ll~~~~~~~~~~~~g~~l~gk~vvVIG~G~iVG~~~A~~L~~~gAtVtv~nR~~~~l~~ra~~la~~~~~~t~  230 (320)
T 1edz_A          151 TPLAIVKILEFLKIYNNLLPEGNRLYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQKFTRGESLKLNKHHVED  230 (320)
T ss_dssp             HHHHHHHHHHHTTCSCTTSCTTCTTTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEEEEESCCCSSCCCCEEEE
T ss_pred             cHHHHHHHHHhhcccccccccCCCCCCCEEEEECCCcchHHHHHHHHHHCCCEEEEEeCchHHHHhHHHHHhhhcccccc
Confidence            345555555553        45578999999999996 599999999999999999998855432 1222221   11  


Q ss_pred             ------eCHHHHhcCCcEEEEcCCCccc-CCHHHHhccCCCeEEEeccCC
Q psy4626         124 ------VKLNEVIRTVDIVVTATGNKNV-VTREHMDKMKNGCVVCNMGHS  166 (542)
Q Consensus       124 ------~~l~e~l~~aDvVi~atG~~~l-I~~e~l~~mk~GailvnvG~g  166 (542)
                            .++.+.+++||+||.++|.++. |+.+.   +|+|++++++|..
T Consensus       231 ~~~t~~~~L~e~l~~ADIVIsAtg~p~~vI~~e~---vk~GavVIDVgi~  277 (320)
T 1edz_A          231 LGEYSEDLLKKCSLDSDVVITGVPSENYKFPTEY---IKEGAVCINFACT  277 (320)
T ss_dssp             EEECCHHHHHHHHHHCSEEEECCCCTTCCBCTTT---SCTTEEEEECSSS
T ss_pred             cccccHhHHHHHhccCCEEEECCCCCcceeCHHH---cCCCeEEEEcCCC
Confidence                  3467888999999999999887 87544   6999999999975

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=98.48  E-value=3.7e-07  Score=93.91  Aligned_cols=117  Identities=20%  Similarity=0.252  Sum_probs=87.3

Q ss_pred             HHHHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCCC-EEEEEeCCchhhhhhhcCCce-eeCH-----HHHh----
Q psy4626          62 SIIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMDGFS-VVKL-----NEVI----  130 (542)
Q Consensus        62 s~~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga-~Viv~d~dp~r~~~A~~~G~~-v~~l-----~e~l----  130 (542)
                      ..++++.++ + . +|++|+|+|.|.||+.+++.++.+|+ +|+++++++.+...+...|++ +++.     .+.+    
T Consensus       156 ta~~~l~~~-~-~-~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~v~~~~  232 (348)
T 2d8a_A          156 NAVDTVLAG-P-I-SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKVGADYVINPFEEDVVKEVMDIT  232 (348)
T ss_dssp             HHHHHHTTS-C-C-TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHHTCSEEECTTTSCHHHHHHHHT
T ss_pred             HHHHHHHhc-C-C-CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEECCCCcCHHHHHHHHc
Confidence            446777443 3 3 89999999999999999999999999 999999999888777777765 3332     2222    


Q ss_pred             --cCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCCC--cccCh-HhhcCCCcce
Q psy4626         131 --RTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSN--TEIDV-NSLRTPDLTW  182 (542)
Q Consensus       131 --~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g~--~eid~-~aL~~~~l~v  182 (542)
                        .++|++|+++|....+ .+.++.+++++.++.+|...  ..++. ..+..+++++
T Consensus       233 ~g~g~D~vid~~g~~~~~-~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~i  288 (348)
T 2d8a_A          233 DGNGVDVFLEFSGAPKAL-EQGLQAVTPAGRVSLLGLYPGKVTIDFNNLIIFKALTI  288 (348)
T ss_dssp             TTSCEEEEEECSCCHHHH-HHHHHHEEEEEEEEECCCCSSCCCCCHHHHTTTTTCEE
T ss_pred             CCCCCCEEEECCCCHHHH-HHHHHHHhcCCEEEEEccCCCCcccCchHHHHhCCcEE
Confidence              2689999999976666 37889999999999998754  34444 4444444433

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=98.48  E-value=3.4e-07  Score=96.90  Aligned_cols=91  Identities=24%  Similarity=0.311  Sum_probs=72.4

Q ss_pred             ccCcEEEEEcCChhHHHHHHHHHhCCC-EEEEEeCCchhh-hhhhcCCceee---CHHHHhcCCcEEEEcCCCc-ccCCH
Q psy4626          75 FGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICA-LQACMDGFSVV---KLNEVIRTVDIVVTATGNK-NVVTR  148 (542)
Q Consensus        75 l~GktVvViG~G~IG~~vA~~l~~~Ga-~Viv~d~dp~r~-~~A~~~G~~v~---~l~e~l~~aDvVi~atG~~-~lI~~  148 (542)
                      +.|++|+|+|+|.+|+.+++.|+.+|+ +|+++++++.++ ..+...|..++   ++.+.+.++|+||+|||.. ++++.
T Consensus       165 l~g~~VlIiGaG~iG~~~a~~l~~~G~~~V~v~~r~~~ra~~la~~~g~~~~~~~~l~~~l~~aDvVi~at~~~~~~~~~  244 (404)
T 1gpj_A          165 LHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGGEAVRFDELVDHLARSDVVVSATAAPHPVIHV  244 (404)
T ss_dssp             CTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTCEECCGGGHHHHHHTCSEEEECCSSSSCCBCH
T ss_pred             ccCCEEEEEChHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCceecHHhHHHHhcCCCEEEEccCCCCceecH
Confidence            689999999999999999999999999 999999998876 34555566543   4556678999999998854 45676


Q ss_pred             HHHhc--cC----CCeEEEeccC
Q psy4626         149 EHMDK--MK----NGCVVCNMGH  165 (542)
Q Consensus       149 e~l~~--mk----~GailvnvG~  165 (542)
                      +.++.  ||    ++.++++++.
T Consensus       245 ~~l~~~~lk~r~~~~~v~vdia~  267 (404)
T 1gpj_A          245 DDVREALRKRDRRSPILIIDIAN  267 (404)
T ss_dssp             HHHHHHHHHCSSCCCEEEEECCS
T ss_pred             HHHHHHHHhccCCCCEEEEEccC
Confidence            77887  42    5567778775

>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1

Probab=98.48  E-value=2.2e-07  Score=96.03  Aligned_cols=186  Identities=17%  Similarity=0.250  Sum_probs=115.1

Q ss_pred             HHhcCCcEEEEcCCCcccCCHHHHhccCC--CeEEEeccCCCcccChHhhcCCCcceeeeccceeeEecCCCCEEEEecC
Q psy4626         128 EVIRTVDIVVTATGNKNVVTREHMDKMKN--GCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIVLLAE  205 (542)
Q Consensus       128 e~l~~aDvVi~atG~~~lI~~e~l~~mk~--GailvnvG~g~~eid~~aL~~~~l~v~~~~~~v~~y~~~dg~~I~LLa~  205 (542)
                      +.++++|+++....+  -++++.++.+++  -..+...|.|-+.+|++++..+++.+..+..                  
T Consensus        40 ~~~~~~d~~i~~~~~--~~~~~~l~~~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~p~------------------   99 (333)
T 1dxy_A           40 EWAKGFDGINSLQTT--PYAAGVFEKMHAYGIKFLTIRNVGTDNIDMTAMKQYGIRLSNVPA------------------   99 (333)
T ss_dssp             GGGTTCSEEEECCSS--CBCHHHHHHHHHTTCCEEEESSSCCTTBCHHHHHHTTCEEECCTT------------------
T ss_pred             HHhcCCeEEEEcCCC--CCCHHHHHhCcccCceEEEEcCcccCccCHHHHHhCCCEEEeCCC------------------
Confidence            456889999875322  467788888876  6678888988888999888755544332210                  


Q ss_pred             CCcccccCCCChhHHHhhHHHH------HHHHHHHHhcCCCCCCC--CccccCChhhHHHHHHhcCCcccc----ccccc
Q psy4626         206 GRLVNLSCSSLPSFVVSITACT------QALALIELFNAPSGRYK--SDVYLLPKKMDEYVASLHLPTFDA----HLTEL  273 (542)
Q Consensus       206 GrLvnl~~~thp~~vmd~sfa~------q~la~~~L~~~~~~~~~--~gv~~lp~~~d~~VA~l~L~~lg~----~i~~l  273 (542)
                               .++..+-+..++.      ++-......+.  ++|.  .+.  .+.       ++..+++|+    .|++.
T Consensus       100 ---------~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~--g~w~~~~~~--~~~-------~l~g~~vgIiG~G~IG~~  159 (333)
T 1dxy_A          100 ---------YSPAAIAEFALTDTLYLLRNMGKVQAQLQA--GDYEKAGTF--IGK-------ELGQQTVGVMGTGHIGQV  159 (333)
T ss_dssp             ---------SCHHHHHHHHHHHHHHHHTTHHHHHHHHHT--TCHHHHTCC--CCC-------CGGGSEEEEECCSHHHHH
T ss_pred             ---------CCchHHHHHHHHHHHHHhhhHHHHHHHHHc--CCcccccCC--Ccc-------CCCCCEEEEECcCHHHHH
Confidence                     0111111111111      11111111122  3331  110  011       344456666    88889


Q ss_pred             cHHHHhhcCCC--CCCCCCCCccccCCeeeeehhhhcccCcEEEEcc----CCCCccCHhHHhcCCCCcEEEccCCCCcc
Q psy4626         274 SDEQAKYMGLN--KAGPFKPSYYSMDGFSVVKLNEVIRTVDIVVTAT----GNKNVVTREHMDKMKNGCVVCNMGHSNTE  347 (542)
Q Consensus       274 t~~~a~~lg~~--e~~p~~a~ea~mdG~~v~~~~~a~~~~d~~~t~t----g~~~vi~~~~~~~mk~gail~n~gh~~~E  347 (542)
                      .+++++++|+.  -.||...-++ -++.+..+++++++++|+|++..    .++++|+.+.|+.||+|++++|+|++.. 
T Consensus       160 ~A~~l~~~G~~V~~~d~~~~~~~-~~~~~~~~l~ell~~aDvV~~~~P~~~~t~~li~~~~l~~mk~ga~lIn~srg~~-  237 (333)
T 1dxy_A          160 AIKLFKGFGAKVIAYDPYPMKGD-HPDFDYVSLEDLFKQSDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVINTARPNL-  237 (333)
T ss_dssp             HHHHHHHTTCEEEEECSSCCSSC-CTTCEECCHHHHHHHCSEEEECCCCCGGGTTSBCHHHHHHSCTTEEEEECSCTTS-
T ss_pred             HHHHHHHCCCEEEEECCCcchhh-HhccccCCHHHHHhcCCEEEEcCCCchhHHHHhCHHHHhhCCCCcEEEECCCCcc-
Confidence            99999999984  2233332222 23355568999999999999943    4788999999999999999999999876 


Q ss_pred             cccccccC
Q psy4626         348 IDVNSLRT  355 (542)
Q Consensus       348 i~~~~l~~  355 (542)
                      +|-++|.+
T Consensus       238 vd~~aL~~  245 (333)
T 1dxy_A          238 IDTQAMLS  245 (333)
T ss_dssp             BCHHHHHH
T ss_pred             cCHHHHHH
Confidence            56555554

>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}

Probab=98.48  E-value=5.3e-07  Score=91.79  Aligned_cols=91  Identities=27%  Similarity=0.424  Sum_probs=74.3

Q ss_pred             HHHHHHHHHHhhcCccccCcEEEEEcCCh-hHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHH--HHhcCCcE
Q psy4626          59 CRESIIDSLKRSTDVMFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLN--EVIRTVDI  135 (542)
Q Consensus        59 ~~~s~~~ai~r~~~~~l~GktVvViG~G~-IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~--e~l~~aDv  135 (542)
                      +-.+++..+.+ .+..+.|++++|+|.|. +|+.+|..|...|++|+++++...             +++  +.++.||+
T Consensus       148 Tp~gv~~lL~~-~~i~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~~~~T~-------------~l~l~~~~~~ADI  213 (300)
T 4a26_A          148 TAKGVIVLLKR-CGIEMAGKRAVVLGRSNIVGAPVAALLMKENATVTIVHSGTS-------------TEDMIDYLRTADI  213 (300)
T ss_dssp             HHHHHHHHHHH-HTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTSC-------------HHHHHHHHHTCSE
T ss_pred             CHHHHHHHHHH-cCCCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCCC-------------CchhhhhhccCCE
Confidence            34556665444 45789999999999887 799999999999999999985321             344  78899999


Q ss_pred             EEEcCCCcccCCHHHHhccCCCeEEEeccCC
Q psy4626         136 VVTATGNKNVVTREHMDKMKNGCVVCNMGHS  166 (542)
Q Consensus       136 Vi~atG~~~lI~~e~l~~mk~GailvnvG~g  166 (542)
                      ||.++|.+++|+++.   +|+|++++++|..
T Consensus       214 VI~Avg~p~~I~~~~---vk~GavVIDvgi~  241 (300)
T 4a26_A          214 VIAAMGQPGYVKGEW---IKEGAAVVDVGTT  241 (300)
T ss_dssp             EEECSCCTTCBCGGG---SCTTCEEEECCCE
T ss_pred             EEECCCCCCCCcHHh---cCCCcEEEEEecc
Confidence            999999999998644   6999999999964

>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*

Probab=98.47  E-value=7.5e-07  Score=90.65  Aligned_cols=92  Identities=25%  Similarity=0.367  Sum_probs=76.5

Q ss_pred             HHHHHHHHHHHhhcCccccCcEEEEEcCCh-hHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCCcEE
Q psy4626          58 MCRESIIDSLKRSTDVMFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIV  136 (542)
Q Consensus        58 g~~~s~~~ai~r~~~~~l~GktVvViG~G~-IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~aDvV  136 (542)
                      .|-.+++..+.+ .+..+.|++|+|+|.|. +|+.+|+.|...|++|++++..             ..++.+.++.||+|
T Consensus       147 cTp~gi~~ll~~-~~i~l~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~-------------t~~L~~~~~~ADIV  212 (301)
T 1a4i_A          147 CTPKGCLELIKE-TGVPIAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSK-------------TAHLDEEVNKGDIL  212 (301)
T ss_dssp             HHHHHHHHHHHT-TTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT-------------CSSHHHHHTTCSEE
T ss_pred             chHHHHHHHHHH-cCCCCCCCEEEEECCCchHHHHHHHHHHhCCCeEEEEECC-------------cccHHHHhccCCEE
Confidence            345666665544 45689999999999996 7999999999999999999732             24677888999999


Q ss_pred             EEcCCCcccCCHHHHhccCCCeEEEeccCC
Q psy4626         137 VTATGNKNVVTREHMDKMKNGCVVCNMGHS  166 (542)
Q Consensus       137 i~atG~~~lI~~e~l~~mk~GailvnvG~g  166 (542)
                      |.++|.+++|+++.   +|+|++++++|..
T Consensus       213 I~Avg~p~~I~~~~---vk~GavVIDVgi~  239 (301)
T 1a4i_A          213 VVATGQPEMVKGEW---IKPGAIVIDCGIN  239 (301)
T ss_dssp             EECCCCTTCBCGGG---SCTTCEEEECCCB
T ss_pred             EECCCCcccCCHHH---cCCCcEEEEccCC
Confidence            99999999998655   6899999999964

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=98.47  E-value=1.1e-06  Score=91.34  Aligned_cols=103  Identities=19%  Similarity=0.186  Sum_probs=80.7

Q ss_pred             HHHHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCCC-EEEEEeCCchhhhhhhcCCce-eeCH-------HHHh--
Q psy4626          62 SIIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMDGFS-VVKL-------NEVI--  130 (542)
Q Consensus        62 s~~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga-~Viv~d~dp~r~~~A~~~G~~-v~~l-------~e~l--  130 (542)
                      ..|+++.+.. ...+|++|+|+|.|.||+.+++.++.+|+ +|++++.++.+...+...|++ +++.       .+.+  
T Consensus       178 ta~~~l~~~~-~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~  256 (374)
T 2jhf_A          178 TGYGSAVKVA-KVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNPQDYKKPIQEVLTE  256 (374)
T ss_dssp             HHHHHHHTTT-CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHH
T ss_pred             HHHHHHHhcc-CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCceEecccccchhHHHHHHH
Confidence            3455554332 24579999999999999999999999999 899999999988888888875 3332       2222  


Q ss_pred             ---cCCcEEEEcCCCcccCCHHHHhccCCC-eEEEeccCC
Q psy4626         131 ---RTVDIVVTATGNKNVVTREHMDKMKNG-CVVCNMGHS  166 (542)
Q Consensus       131 ---~~aDvVi~atG~~~lI~~e~l~~mk~G-ailvnvG~g  166 (542)
                         .++|++|+++|....+ .+.++.++++ +.++.+|..
T Consensus       257 ~~~~g~D~vid~~g~~~~~-~~~~~~l~~~~G~iv~~G~~  295 (374)
T 2jhf_A          257 MSNGGVDFSFEVIGRLDTM-VTALSCCQEAYGVSVIVGVP  295 (374)
T ss_dssp             HTTSCBSEEEECSCCHHHH-HHHHHHBCTTTCEEEECSCC
T ss_pred             HhCCCCcEEEECCCCHHHH-HHHHHHhhcCCcEEEEeccC
Confidence               2689999999986666 3789999999 999999864

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=98.47  E-value=5.1e-07  Score=95.06  Aligned_cols=122  Identities=16%  Similarity=0.142  Sum_probs=90.2

Q ss_pred             HHHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCCC-EEEEEeCCchhhhhhhcCCce-eeCH-----HHH----h-
Q psy4626          63 IIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMDGFS-VVKL-----NEV----I-  130 (542)
Q Consensus        63 ~~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga-~Viv~d~dp~r~~~A~~~G~~-v~~l-----~e~----l-  130 (542)
                      .|+++........+|++|+|+|.|.+|+.+++.++.+|+ +|++++.++.+...+...|++ +++.     .+.    . 
T Consensus       200 a~~al~~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~i~~~t~  279 (404)
T 3ip1_A          200 AYNAVIVRGGGIRPGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKELGADHVIDPTKENFVEAVLDYTN  279 (404)
T ss_dssp             HHHHHTTTSCCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCSEEECTTTSCHHHHHHHHTT
T ss_pred             HHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCCEEEcCCCCCHHHHHHHHhC
Confidence            466664332234689999999999999999999999999 999999999998888888875 3332     222    2 


Q ss_pred             -cCCcEEEEcCCCcc-cCCHHHHhcc----CCCeEEEeccCCC--cccChHhhcCCCcceeee
Q psy4626         131 -RTVDIVVTATGNKN-VVTREHMDKM----KNGCVVCNMGHSN--TEIDVNSLRTPDLTWEKV  185 (542)
Q Consensus       131 -~~aDvVi~atG~~~-lI~~e~l~~m----k~GailvnvG~g~--~eid~~aL~~~~l~v~~~  185 (542)
                       .++|++|+++|... .+ ...++.+    ++++.++.+|...  ..++...+..+++++.+.
T Consensus       280 g~g~D~vid~~g~~~~~~-~~~~~~l~~~~~~~G~iv~~G~~~~~~~~~~~~~~~~~~~i~g~  341 (404)
T 3ip1_A          280 GLGAKLFLEATGVPQLVW-PQIEEVIWRARGINATVAIVARADAKIPLTGEVFQVRRAQIVGS  341 (404)
T ss_dssp             TCCCSEEEECSSCHHHHH-HHHHHHHHHCSCCCCEEEECSCCCSCEEECHHHHHHTTCEEEEC
T ss_pred             CCCCCEEEECCCCcHHHH-HHHHHHHHhccCCCcEEEEeCCCCCCCcccHHHHhccceEEEEe
Confidence             36999999999863 33 3456666    9999999999763  456666665555555443

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=98.47  E-value=3.1e-07  Score=95.36  Aligned_cols=120  Identities=19%  Similarity=0.178  Sum_probs=87.9

Q ss_pred             HHHHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCCC-EEEEEeCCchhhhhhhcCCce-eeC-----HHHHh----
Q psy4626          62 SIIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMDGFS-VVK-----LNEVI----  130 (542)
Q Consensus        62 s~~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga-~Viv~d~dp~r~~~A~~~G~~-v~~-----l~e~l----  130 (542)
                      ..++++.+.. ...+|++|+|+|.|.||..+++.++.+|+ +|++++.++.+...+...|++ +++     ..+.+    
T Consensus       177 ta~~al~~~~-~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~~  255 (371)
T 1f8f_A          177 TGAGACINAL-KVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVINSKTQDPVAAIKEIT  255 (371)
T ss_dssp             HHHHHHHTTT-CCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHT
T ss_pred             HHHHHHHhcc-CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCCEEecCCccCHHHHHHHhc
Confidence            3456664332 24579999999999999999999999999 799999999988878777875 332     22222    


Q ss_pred             -cCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCCC----cccChHhhcCCCccee
Q psy4626         131 -RTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSN----TEIDVNSLRTPDLTWE  183 (542)
Q Consensus       131 -~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g~----~eid~~aL~~~~l~v~  183 (542)
                       .++|+||+++|....+ .+.++.+++++.++.+|...    ..++...+..+++++.
T Consensus       256 ~gg~D~vid~~g~~~~~-~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~i~  312 (371)
T 1f8f_A          256 DGGVNFALESTGSPEIL-KQGVDALGILGKIAVVGAPQLGTTAQFDVNDLLLGGKTIL  312 (371)
T ss_dssp             TSCEEEEEECSCCHHHH-HHHHHTEEEEEEEEECCCCSTTCCCCCCHHHHHHTTCEEE
T ss_pred             CCCCcEEEECCCCHHHH-HHHHHHHhcCCEEEEeCCCCCCCccccCHHHHHhCCCEEE
Confidence             2589999999976666 37899999999999998653    2455544443444433

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=98.47  E-value=2.2e-07  Score=97.49  Aligned_cols=102  Identities=21%  Similarity=0.285  Sum_probs=81.2

Q ss_pred             HHHHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCCC-EEEEEeCCchhhhhhhcCCceeeCH------HHHh----
Q psy4626          62 SIIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMDGFSVVKL------NEVI----  130 (542)
Q Consensus        62 s~~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga-~Viv~d~dp~r~~~A~~~G~~v~~l------~e~l----  130 (542)
                      ..|+++.++  ...+|++|+|+|+|.||..+++.++.+|+ +|+++++++.+...+...|+++++.      .+.+    
T Consensus       173 ta~~al~~~--~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~i~~~~~~~~~~~~~~~~  250 (398)
T 2dph_A          173 TGFHGCVSA--GVKPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLSDAGFETIDLRNSAPLRDQIDQIL  250 (398)
T ss_dssp             HHHHHHHHT--TCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHTTTCEEEETTSSSCHHHHHHHHH
T ss_pred             HHHHHHHHc--CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCcEEcCCCcchHHHHHHHHh
Confidence            456777543  34589999999999999999999999999 9999999999888888888865432      2222    


Q ss_pred             --cCCcEEEEcCCCcc--------------cCCHHHHhccCCCeEEEeccCC
Q psy4626         131 --RTVDIVVTATGNKN--------------VVTREHMDKMKNGCVVCNMGHS  166 (542)
Q Consensus       131 --~~aDvVi~atG~~~--------------lI~~e~l~~mk~GailvnvG~g  166 (542)
                        .++|+||+++|...              .+ .+.++.+++++.++.+|..
T Consensus       251 ~g~g~Dvvid~~g~~~~~~~~~~~~~~~~~~~-~~~~~~l~~gG~iv~~G~~  301 (398)
T 2dph_A          251 GKPEVDCGVDAVGFEAHGLGDEANTETPNGAL-NSLFDVVRAGGAIGIPGIY  301 (398)
T ss_dssp             SSSCEEEEEECSCTTCBCSGGGTTSBCTTHHH-HHHHHHEEEEEEEECCSCC
T ss_pred             CCCCCCEEEECCCCccccccccccccccHHHH-HHHHHHHhcCCEEEEeccc
Confidence              26899999998653              34 4688999999999999865

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=98.46  E-value=1.4e-06  Score=90.54  Aligned_cols=103  Identities=20%  Similarity=0.295  Sum_probs=80.8

Q ss_pred             HHHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCCC-EEEEEeCCchhhhhhhcCCce-eeCH-------HHHh---
Q psy4626          63 IIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMDGFS-VVKL-------NEVI---  130 (542)
Q Consensus        63 ~~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga-~Viv~d~dp~r~~~A~~~G~~-v~~l-------~e~l---  130 (542)
                      .|+++.+.. ...+|++|+|+|.|.||+.+++.++.+|+ +|++++.++.+...+...|++ +++.       .+.+   
T Consensus       180 a~~~l~~~~-~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~  258 (374)
T 1cdo_A          180 GFGAAVNTA-KVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGATDFVNPNDHSEPISQVLSKM  258 (374)
T ss_dssp             HHHHHHTTT-CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCCEEECGGGCSSCHHHHHHHH
T ss_pred             HHHHHHhcc-CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhCCceEEeccccchhHHHHHHHH
Confidence            455543332 24579999999999999999999999999 899999999988888888875 3332       2222   


Q ss_pred             --cCCcEEEEcCCCcccCCHHHHhccCCC-eEEEeccCCC
Q psy4626         131 --RTVDIVVTATGNKNVVTREHMDKMKNG-CVVCNMGHSN  167 (542)
Q Consensus       131 --~~aDvVi~atG~~~lI~~e~l~~mk~G-ailvnvG~g~  167 (542)
                        .++|++|+++|....+ ...++.++++ +.++.+|...
T Consensus       259 ~~~g~D~vid~~g~~~~~-~~~~~~l~~~~G~iv~~G~~~  297 (374)
T 1cdo_A          259 TNGGVDFSLECVGNVGVM-RNALESCLKGWGVSVLVGWTD  297 (374)
T ss_dssp             HTSCBSEEEECSCCHHHH-HHHHHTBCTTTCEEEECSCCS
T ss_pred             hCCCCCEEEECCCCHHHH-HHHHHHhhcCCcEEEEEcCCC
Confidence              2689999999976666 3789999999 9999998653

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=98.46  E-value=4e-07  Score=91.70  Aligned_cols=118  Identities=17%  Similarity=0.202  Sum_probs=83.8

Q ss_pred             HHHHHHHHhhcCccccCcEEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce-eeCH---H---HHhcC
Q psy4626          61 ESIIDSLKRSTDVMFGGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVKL---N---EVIRT  132 (542)
Q Consensus        61 ~s~~~ai~r~~~~~l~GktVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~-v~~l---~---e~l~~  132 (542)
                      -..|+++.+..  ..+|++|+|+|. |.+|+.+++.++.+|++|+++++++.+...+...|.+ +++.   +   +.+.+
T Consensus       112 ~ta~~~l~~~~--~~~g~~vlV~Ga~G~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~~~~~~~~~~~~~~~~~~  189 (302)
T 1iz0_A          112 LTAYLALKRAQ--ARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLALGAEEAATYAEVPERAKAWGG  189 (302)
T ss_dssp             HHHHHHHHHTT--CCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHHTTCSEEEEGGGHHHHHHHTTS
T ss_pred             HHHHHHHHHhc--CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcCCCEEEECCcchhHHHHhcC
Confidence            34466665432  457999999998 9999999999999999999999999888777777865 3332   1   22368


Q ss_pred             CcEEEEcCCCcccCCHHHHhccCCCeEEEeccCCCc---ccChHhhcCCCccee
Q psy4626         133 VDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNT---EIDVNSLRTPDLTWE  183 (542)
Q Consensus       133 aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g~~---eid~~aL~~~~l~v~  183 (542)
                      +|++|+ +|. ..+ ...++.+++++.++.+|....   +++...+..+++++.
T Consensus       190 ~d~vid-~g~-~~~-~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~  240 (302)
T 1iz0_A          190 LDLVLE-VRG-KEV-EESLGLLAHGGRLVYIGAAEGEVAPIPPLRLMRRNLAVL  240 (302)
T ss_dssp             EEEEEE-CSC-TTH-HHHHTTEEEEEEEEEC-------CCCCTTHHHHTTCEEE
T ss_pred             ceEEEE-CCH-HHH-HHHHHhhccCCEEEEEeCCCCCCCCcCHHHHHhCCCeEE
Confidence            999999 887 445 478999999999999986532   344443433344333

>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2

Probab=98.45  E-value=5.7e-07  Score=91.02  Aligned_cols=91  Identities=22%  Similarity=0.380  Sum_probs=75.6

Q ss_pred             HHHHHHHHHHhhcCccccCcEEEEEcCCh-hHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCCcEEE
Q psy4626          59 CRESIIDSLKRSTDVMFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVV  137 (542)
Q Consensus        59 ~~~s~~~ai~r~~~~~l~GktVvViG~G~-IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~aDvVi  137 (542)
                      |-.+++..+.+ .+..+.|++|+|+|.|. +|+.+|+.|...|++|++++...             .++.+.++.||+||
T Consensus       142 Tp~gi~~ll~~-~~i~l~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t-------------~~L~~~~~~ADIVI  207 (288)
T 1b0a_A          142 TPRGIVTLLER-YNIDTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFT-------------KNLRHHVENADLLI  207 (288)
T ss_dssp             HHHHHHHHHHH-TTCCCTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSC-------------SCHHHHHHHCSEEE
T ss_pred             cHHHHHHHHHH-cCCCCCCCEEEEECCChHHHHHHHHHHHHCCCeEEEEeCCc-------------hhHHHHhccCCEEE
Confidence            44556665544 45689999999999996 69999999999999999997432             35678889999999


Q ss_pred             EcCCCcccCCHHHHhccCCCeEEEeccCC
Q psy4626         138 TATGNKNVVTREHMDKMKNGCVVCNMGHS  166 (542)
Q Consensus       138 ~atG~~~lI~~e~l~~mk~GailvnvG~g  166 (542)
                      .++|.+++|+++.   +|+|++++++|..
T Consensus       208 ~Avg~p~lI~~~~---vk~GavVIDVgi~  233 (288)
T 1b0a_A          208 VAVGKPGFIPGDW---IKEGAIVIDVGIN  233 (288)
T ss_dssp             ECSCCTTCBCTTT---SCTTCEEEECCCE
T ss_pred             ECCCCcCcCCHHH---cCCCcEEEEccCC
Confidence            9999999998654   6999999999964

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=98.45  E-value=8.2e-07  Score=92.68  Aligned_cols=122  Identities=20%  Similarity=0.247  Sum_probs=90.2

Q ss_pred             HHHHHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCC-CEEEEEeCCchhhhhhhcCCce-eeCHH--------HHh
Q psy4626          61 ESIIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLG-CVIYITEIDPICALQACMDGFS-VVKLN--------EVI  130 (542)
Q Consensus        61 ~s~~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~G-a~Viv~d~dp~r~~~A~~~G~~-v~~l~--------e~l  130 (542)
                      ...++++.++ +...+|++|+|+|.|.+|+.+++.++.+| ++|+++++++.+...+...|++ +++..        +.+
T Consensus       181 ~ta~~al~~~-~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~v  259 (380)
T 1vj0_A          181 ATAYHAFDEY-PESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGADLTLNRRETSVEERRKAI  259 (380)
T ss_dssp             HHHHHHHHTC-SSCCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHH
T ss_pred             HHHHHHHHhc-CCCCCCCEEEEECcCHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHHcCCcEEEeccccCcchHHHHH
Confidence            3456677543 21457999999999999999999999999 4999999999988888888875 33221        111


Q ss_pred             ------cCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCCC----cccChHh-hcCCCcceee
Q psy4626         131 ------RTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSN----TEIDVNS-LRTPDLTWEK  184 (542)
Q Consensus       131 ------~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g~----~eid~~a-L~~~~l~v~~  184 (542)
                            .++|+||+++|....+ .+.++.+++++.++.+|...    ..++... +..+++++.+
T Consensus       260 ~~~~~g~g~Dvvid~~g~~~~~-~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~~i~g  323 (380)
T 1vj0_A          260 MDITHGRGADFILEATGDSRAL-LEGSELLRRGGFYSVAGVAVPQDPVPFKVYEWLVLKNATFKG  323 (380)
T ss_dssp             HHHTTTSCEEEEEECSSCTTHH-HHHHHHEEEEEEEEECCCCSCCCCEEECHHHHTTTTTCEEEE
T ss_pred             HHHhCCCCCcEEEECCCCHHHH-HHHHHHHhcCCEEEEEecCCCCCCeeEchHHHHHhCCeEEEE
Confidence                  2689999999876566 37899999999999998643    2455554 5555555444

>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa}

Probab=98.44  E-value=3.6e-07  Score=96.23  Aligned_cols=169  Identities=12%  Similarity=0.199  Sum_probs=111.7

Q ss_pred             HhcCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCCCcccChHhhcCCCcceeeeccceeeEecCCCCEEEEecCCCc
Q psy4626         129 VIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIVLLAEGRL  208 (542)
Q Consensus       129 ~l~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g~~eid~~aL~~~~l~v~~~~~~v~~y~~~dg~~I~LLa~GrL  208 (542)
                      .++++|+++....+  -++++.++ .++-..+...|.|-+.+|++++.++++.+...                       
T Consensus        34 ~l~~ad~li~~~~~--~~~~~~l~-~~~Lk~I~~~~~G~D~iD~~~~~~~gI~v~n~-----------------------   87 (380)
T 2o4c_A           34 ALAEVDVLLVRSVT--EVSRAALA-GSPVRFVGTCTIGTDHLDLDYFAEAGIAWSSA-----------------------   87 (380)
T ss_dssp             TTTTCSEEEECTTS--CBCHHHHT-TSCCCEEEECSSCSTTBCHHHHHHHTCEEECC-----------------------
T ss_pred             HHCCcEEEEEcCCC--CCCHHHhc-CCCceEEEEcCcccchhhHHHHHhCCCEEEeC-----------------------
Confidence            35789999875322  46778888 78888888999998889998886433322211                       


Q ss_pred             ccccCCCChhHHHhhHHHHHHHHHHH-HhcCCCCCCCCccccCChhhHHHHHHhcCCcccc----ccccccHHHHhhcCC
Q psy4626         209 VNLSCSSLPSFVVSITACTQALALIE-LFNAPSGRYKSDVYLLPKKMDEYVASLHLPTFDA----HLTELSDEQAKYMGL  283 (542)
Q Consensus       209 vnl~~~thp~~vmd~sfa~q~la~~~-L~~~~~~~~~~gv~~lp~~~d~~VA~l~L~~lg~----~i~~lt~~~a~~lg~  283 (542)
                         .. .+.     .+.|.++++.+- +.+    +|..              ++..+++|+    .|++..+++++.+|+
T Consensus        88 ---pg-~~~-----~~vAE~~l~~lL~l~r----~~~~--------------~l~g~tvGIIGlG~IG~~vA~~l~~~G~  140 (380)
T 2o4c_A           88 ---PG-CNA-----RGVVDYVLGCLLAMAE----VRGA--------------DLAERTYGVVGAGQVGGRLVEVLRGLGW  140 (380)
T ss_dssp             ---TT-TTH-----HHHHHHHHHHHHHHHH----HHTC--------------CGGGCEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             ---CC-cCh-----HHHHHHHHHHHHHHHh----hhhc--------------ccCCCEEEEEeCCHHHHHHHHHHHHCCC
Confidence               10 011     233333333332 211    1211              234455665    888888999999998


Q ss_pred             C--CCCCCCCCccccCCeeeeehhhhcccCcEEEEccC--------CCCccCHhHHhcCCCCcEEEccCCCCcccccccc
Q psy4626         284 N--KAGPFKPSYYSMDGFSVVKLNEVIRTVDIVVTATG--------NKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSL  353 (542)
Q Consensus       284 ~--e~~p~~a~ea~mdG~~v~~~~~a~~~~d~~~t~tg--------~~~vi~~~~~~~mk~gail~n~gh~~~Ei~~~~l  353 (542)
                      .  -.||.....  -.|....+++|+++++|||++.+-        ++++|+.+.|+.||+|++++|+|++.+ +|-.+|
T Consensus       141 ~V~~~d~~~~~~--~~g~~~~~l~ell~~aDvV~l~~Plt~~g~~~T~~li~~~~l~~mk~gailIN~sRG~v-vd~~aL  217 (380)
T 2o4c_A          141 KVLVCDPPRQAR--EPDGEFVSLERLLAEADVISLHTPLNRDGEHPTRHLLDEPRLAALRPGTWLVNASRGAV-VDNQAL  217 (380)
T ss_dssp             EEEEECHHHHHH--STTSCCCCHHHHHHHCSEEEECCCCCSSSSSCCTTSBCHHHHHTSCTTEEEEECSCGGG-BCHHHH
T ss_pred             EEEEEcCChhhh--ccCcccCCHHHHHHhCCEEEEeccCccccccchhhhcCHHHHhhCCCCcEEEECCCCcc-cCHHHH
Confidence            4  335443221  245566789999999999999542        889999999999999999999999876 343333

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=98.43  E-value=1.1e-06  Score=91.12  Aligned_cols=103  Identities=21%  Similarity=0.229  Sum_probs=80.4

Q ss_pred             HHHHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCCC-EEEEEeCCchhhhhhhcCCce-eeCH-------HHHh--
Q psy4626          62 SIIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMDGFS-VVKL-------NEVI--  130 (542)
Q Consensus        62 s~~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga-~Viv~d~dp~r~~~A~~~G~~-v~~l-------~e~l--  130 (542)
                      ..|+++.+.. ...+|++|+|+|.|.+|+.+++.++.+|+ +|++++.++.+...+...|++ +++.       .+.+  
T Consensus       177 ta~~~l~~~~-~~~~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~v~~  255 (373)
T 2fzw_A          177 TGYGAAVNTA-KLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECINPQDFSKPIQEVLIE  255 (373)
T ss_dssp             HHHHHHHTTT-CCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHH
T ss_pred             HHHHHHHhhc-CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEeccccccccHHHHHHH
Confidence            3455554332 24579999999999999999999999999 899999999988877777865 3332       2222  


Q ss_pred             ---cCCcEEEEcCCCcccCCHHHHhccCCC-eEEEeccCC
Q psy4626         131 ---RTVDIVVTATGNKNVVTREHMDKMKNG-CVVCNMGHS  166 (542)
Q Consensus       131 ---~~aDvVi~atG~~~lI~~e~l~~mk~G-ailvnvG~g  166 (542)
                         .++|++|+++|....+ .+.++.++++ +.++.+|..
T Consensus       256 ~~~~g~D~vid~~g~~~~~-~~~~~~l~~~~G~iv~~G~~  294 (373)
T 2fzw_A          256 MTDGGVDYSFECIGNVKVM-RAALEACHKGWGVSVVVGVA  294 (373)
T ss_dssp             HTTSCBSEEEECSCCHHHH-HHHHHTBCTTTCEEEECSCC
T ss_pred             HhCCCCCEEEECCCcHHHH-HHHHHhhccCCcEEEEEecC
Confidence               2689999999976666 4789999999 999999865

>2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A

Probab=98.43  E-value=8.4e-07  Score=89.50  Aligned_cols=91  Identities=27%  Similarity=0.431  Sum_probs=75.2

Q ss_pred             HHHHHHHHHHhhcCccccCcEEEEEcCCh-hHHHHHHHHHhC--CCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCCcE
Q psy4626          59 CRESIIDSLKRSTDVMFGGKQVVLCGYGE-VGKGCCQSLKGL--GCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDI  135 (542)
Q Consensus        59 ~~~s~~~ai~r~~~~~l~GktVvViG~G~-IG~~vA~~l~~~--Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~aDv  135 (542)
                      +-.++++.+.+. +..+.|++++|+|.|. +|+.+|+.|...  |++|+++++..             .++.+.++.||+
T Consensus       141 Tp~gi~~ll~~~-~i~l~gk~vvVvG~s~iVG~p~A~lL~~~g~~atVtv~h~~t-------------~~L~~~~~~ADI  206 (281)
T 2c2x_A          141 TPRGIVHLLRRY-DISIAGAHVVVIGRGVTVGRPLGLLLTRRSENATVTLCHTGT-------------RDLPALTRQADI  206 (281)
T ss_dssp             HHHHHHHHHHHT-TCCCTTCEEEEECCCTTTHHHHHHHHTSTTTCCEEEEECTTC-------------SCHHHHHTTCSE
T ss_pred             hHHHHHHHHHHc-CCCCCCCEEEEECCCcHHHHHHHHHHhcCCCCCEEEEEECch-------------hHHHHHHhhCCE
Confidence            345555555444 5689999999999997 599999999999  89999997432             467788899999


Q ss_pred             EEEcCCCcccCCHHHHhccCCCeEEEeccCC
Q psy4626         136 VVTATGNKNVVTREHMDKMKNGCVVCNMGHS  166 (542)
Q Consensus       136 Vi~atG~~~lI~~e~l~~mk~GailvnvG~g  166 (542)
                      ||.++|.+++|+++.   +|+|++++++|..
T Consensus       207 VI~Avg~p~~I~~~~---vk~GavVIDVgi~  234 (281)
T 2c2x_A          207 VVAAVGVAHLLTADM---VRPGAAVIDVGVS  234 (281)
T ss_dssp             EEECSCCTTCBCGGG---SCTTCEEEECCEE
T ss_pred             EEECCCCCcccCHHH---cCCCcEEEEccCC
Confidence            999999999998655   6999999999965

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=98.42  E-value=5.4e-07  Score=92.46  Aligned_cols=106  Identities=15%  Similarity=0.175  Sum_probs=84.2

Q ss_pred             HHHHHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhC-CCEEEEEeCCchhhhhhhcCCce-eeC----HHH----Hh
Q psy4626          61 ESIIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGL-GCVIYITEIDPICALQACMDGFS-VVK----LNE----VI  130 (542)
Q Consensus        61 ~s~~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~-Ga~Viv~d~dp~r~~~A~~~G~~-v~~----l~e----~l  130 (542)
                      ...|+++.+......+|++|+|+|.|.+|+.+++.++.+ |++|++++.++.+...+...|++ +++    ..+    ..
T Consensus       156 ~ta~~~l~~~~~~~~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~v~~~t  235 (345)
T 3jv7_A          156 LTPYHAISRVLPLLGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALAREVGADAAVKSGAGAADAIRELT  235 (345)
T ss_dssp             HHHHHHHHTTGGGCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHTTCSEEEECSTTHHHHHHHHH
T ss_pred             HHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCCEEEcCCCcHHHHHHHHh
Confidence            345677766422346899999999999999999999998 67999999999998888888876 322    212    12


Q ss_pred             --cCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCCC
Q psy4626         131 --RTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSN  167 (542)
Q Consensus       131 --~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g~  167 (542)
                        .++|++++++|....+. +.++.+++++.++.+|...
T Consensus       236 ~g~g~d~v~d~~G~~~~~~-~~~~~l~~~G~iv~~G~~~  273 (345)
T 3jv7_A          236 GGQGATAVFDFVGAQSTID-TAQQVVAVDGHISVVGIHA  273 (345)
T ss_dssp             GGGCEEEEEESSCCHHHHH-HHHHHEEEEEEEEECSCCT
T ss_pred             CCCCCeEEEECCCCHHHHH-HHHHHHhcCCEEEEECCCC
Confidence              37999999999876664 7899999999999998653

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=98.42  E-value=2.8e-07  Score=94.96  Aligned_cols=102  Identities=22%  Similarity=0.261  Sum_probs=82.2

Q ss_pred             HHHHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCCC-EEEEEeCCchhhhhhhcCCce-eeCH-----HHH----h
Q psy4626          62 SIIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMDGFS-VVKL-----NEV----I  130 (542)
Q Consensus        62 s~~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga-~Viv~d~dp~r~~~A~~~G~~-v~~l-----~e~----l  130 (542)
                      ..|+++.++  ...+|++|+|+|.|.||..+++.++.+|+ +|++++.++.|...+...|++ +++.     .+.    .
T Consensus       154 ta~~al~~~--~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~v~~~t  231 (352)
T 3fpc_A          154 TGFHGAELA--NIKLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALEYGATDIINYKNGDIVEQILKAT  231 (352)
T ss_dssp             HHHHHHHHT--TCCTTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHHHHTCCEEECGGGSCHHHHHHHHT
T ss_pred             HHHHHHHhc--CCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCceEEcCCCcCHHHHHHHHc
Confidence            346666544  34579999999999999999999999999 899999999888888888875 3332     122    1


Q ss_pred             --cCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCC
Q psy4626         131 --RTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHS  166 (542)
Q Consensus       131 --~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g  166 (542)
                        .++|++++++|....+. +.++.+++++.++.+|..
T Consensus       232 ~g~g~D~v~d~~g~~~~~~-~~~~~l~~~G~~v~~G~~  268 (352)
T 3fpc_A          232 DGKGVDKVVIAGGDVHTFA-QAVKMIKPGSDIGNVNYL  268 (352)
T ss_dssp             TTCCEEEEEECSSCTTHHH-HHHHHEEEEEEEEECCCC
T ss_pred             CCCCCCEEEECCCChHHHH-HHHHHHhcCCEEEEeccc
Confidence              26999999999876664 789999999999999965

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum}

Probab=98.41  E-value=1.7e-07  Score=96.79  Aligned_cols=183  Identities=9%  Similarity=0.150  Sum_probs=115.7

Q ss_pred             HhcCCcEEEEcCCCcccCCHHHH-hccCCCeEEEeccCCCcccChHhhcCCCcceeeeccceeeEecCCCCEEEEecCCC
Q psy4626         129 VIRTVDIVVTATGNKNVVTREHM-DKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIVLLAEGR  207 (542)
Q Consensus       129 ~l~~aDvVi~atG~~~lI~~e~l-~~mk~GailvnvG~g~~eid~~aL~~~~l~v~~~~~~v~~y~~~dg~~I~LLa~Gr  207 (542)
                      .+.++|+++.. .. . + ++.| +.+++-..+...|.|-+.+|++++.++++.+.....                    
T Consensus        37 ~~~~ad~l~~~-~~-~-~-~~~l~~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~g--------------------   92 (324)
T 3evt_A           37 DYDQIEVMYGN-HP-L-L-KTILARPTNQLKFVQVISAGVDYLPLKALQAAGVVVANTSG--------------------   92 (324)
T ss_dssp             TGGGEEEEESC-CT-H-H-HHHHHSTTCCCCEEECSSSCCTTSCHHHHHHTTCEEECCTT--------------------
T ss_pred             HhCCcEEEEEC-Cc-C-h-HHHHHhhCCCceEEEECCccccccCHHHHHHCCcEEEECCC--------------------
Confidence            45678987632 22 2 4 6778 678888899999999778999988765554433211                    


Q ss_pred             cccccCCCChhHHHh------hHHHHHHHHH-HHHhcCCCCCCCCccccCChhhHHHHHHhcCCcccc----ccccccHH
Q psy4626         208 LVNLSCSSLPSFVVS------ITACTQALAL-IELFNAPSGRYKSDVYLLPKKMDEYVASLHLPTFDA----HLTELSDE  276 (542)
Q Consensus       208 Lvnl~~~thp~~vmd------~sfa~q~la~-~~L~~~~~~~~~~gv~~lp~~~d~~VA~l~L~~lg~----~i~~lt~~  276 (542)
                       .      +...+-+      ++++.++... ......  ++|.+..   +      .-++..+++|+    .|++..++
T Consensus        93 -~------~~~~vAE~~~~~~L~~~R~~~~~~~~~~~~--~~W~~~~---~------~~~l~gktvGIiGlG~IG~~vA~  154 (324)
T 3evt_A           93 -I------HADAISESVLAAMLSVVRGYHAAWLNQRGA--RQWALPM---T------TSTLTGQQLLIYGTGQIGQSLAA  154 (324)
T ss_dssp             -H------HHHHHHHHHHHHHHHHHTTHHHHHHHHTTT--CCSSCSS---C------CCCSTTCEEEEECCSHHHHHHHH
T ss_pred             -c------CchHHHHHHHHHHHHHHhChhHHHHHHHhc--CCcccCC---C------CccccCCeEEEECcCHHHHHHHH
Confidence             0      0111111      1222221111 111121  5676532   0      01345567776    88999999


Q ss_pred             HHhhcCCCCC--CCC-CCCccccCCeeeeehhhhcccCcEEEEc----cCCCCccCHhHHhcCCCCcEEEccCCCCcccc
Q psy4626         277 QAKYMGLNKA--GPF-KPSYYSMDGFSVVKLNEVIRTVDIVVTA----TGNKNVVTREHMDKMKNGCVVCNMGHSNTEID  349 (542)
Q Consensus       277 ~a~~lg~~e~--~p~-~a~ea~mdG~~v~~~~~a~~~~d~~~t~----tg~~~vi~~~~~~~mk~gail~n~gh~~~Ei~  349 (542)
                      +++++|+...  ||. +..+..-+++...+++|+++++|+|+++    ..++++|+.+.|+.||+|++++|+|++.. +|
T Consensus       155 ~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~l~ell~~aDvV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~-vd  233 (324)
T 3evt_A          155 KASALGMHVIGVNTTGHPADHFHETVAFTATADALATANFIVNALPLTPTTHHLFSTELFQQTKQQPMLINIGRGPA-VD  233 (324)
T ss_dssp             HHHHTTCEEEEEESSCCCCTTCSEEEEGGGCHHHHHHCSEEEECCCCCGGGTTCBSHHHHHTCCSCCEEEECSCGGG-BC
T ss_pred             HHHhCCCEEEEECCCcchhHhHhhccccCCHHHHHhhCCEEEEcCCCchHHHHhcCHHHHhcCCCCCEEEEcCCChh-hh
Confidence            9999999422  222 2223333445556889999999999993    46789999999999999999999999987 34


Q ss_pred             ccccc
Q psy4626         350 VNSLR  354 (542)
Q Consensus       350 ~~~l~  354 (542)
                      -++|.
T Consensus       234 ~~aL~  238 (324)
T 3evt_A          234 TTALM  238 (324)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            44444

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*

Probab=98.41  E-value=5.4e-07  Score=93.13  Aligned_cols=111  Identities=14%  Similarity=0.110  Sum_probs=83.4

Q ss_pred             HHHHHHHhhcCccccC------cEEEEEcCChhHHHH-HHHH-HhCCCE-EEEEeCCch---hhhhhhcCCceeeCH---
Q psy4626          62 SIIDSLKRSTDVMFGG------KQVVLCGYGEVGKGC-CQSL-KGLGCV-IYITEIDPI---CALQACMDGFSVVKL---  126 (542)
Q Consensus        62 s~~~ai~r~~~~~l~G------ktVvViG~G~IG~~v-A~~l-~~~Ga~-Viv~d~dp~---r~~~A~~~G~~v~~l---  126 (542)
                      ..++++.++  ...+|      ++|+|+|.|.||..+ ++.+ +.+|++ |++++.++.   +...+...|++.++.   
T Consensus       154 ta~~al~~~--~~~~g~~~~~~~~VlV~GaG~vG~~a~iqla~k~~Ga~~Vi~~~~~~~~~~~~~~~~~lGa~~v~~~~~  231 (357)
T 2b5w_A          154 ITEKALEHA--YASRSAFDWDPSSAFVLGNGSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDIIEELDATYVDSRQT  231 (357)
T ss_dssp             HHHHHHHHH--HHTTTTSCCCCCEEEEECCSHHHHHHHHHHHHCTTCCCEEEEEECCCSSCHHHHHHHHTTCEEEETTTS
T ss_pred             HHHHHHHhc--CCCCCcccCCCCEEEEECCCHHHHHHHHHHHHHHcCCcEEEEEeCCcccHHHHHHHHHcCCcccCCCcc
Confidence            345565443  23467      999999999999999 9999 999996 999999888   887788888764332   


Q ss_pred             --HHHh---cCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCCC---cccChHhh
Q psy4626         127 --NEVI---RTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSN---TEIDVNSL  175 (542)
Q Consensus       127 --~e~l---~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g~---~eid~~aL  175 (542)
                        .++.   .++|+||+++|....+ .+.++.+++++.++.+|...   .+++...+
T Consensus       232 ~~~~i~~~~gg~Dvvid~~g~~~~~-~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~  287 (357)
T 2b5w_A          232 PVEDVPDVYEQMDFIYEATGFPKHA-IQSVQALAPNGVGALLGVPSDWAFEVDAGAF  287 (357)
T ss_dssp             CGGGHHHHSCCEEEEEECSCCHHHH-HHHHHHEEEEEEEEECCCCCCCCCCCCHHHH
T ss_pred             CHHHHHHhCCCCCEEEECCCChHHH-HHHHHHHhcCCEEEEEeCCCCCCceecHHHH
Confidence              1211   1589999999986556 37899999999999998654   24454444

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*

Probab=98.41  E-value=9e-07  Score=96.95  Aligned_cols=186  Identities=14%  Similarity=0.218  Sum_probs=121.5

Q ss_pred             HHhcCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCCCcccChHhhcCCCcceeeeccceeeEecCCCCEEEEecCCC
Q psy4626         128 EVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIVLLAEGR  207 (542)
Q Consensus       128 e~l~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g~~eid~~aL~~~~l~v~~~~~~v~~y~~~dg~~I~LLa~Gr  207 (542)
                      +.+.++|+++....+  -++++.++.+++-.++...|.|-+.+|+++...+++.+....                     
T Consensus        40 ~~~~~~d~li~~~~~--~~~~~~l~~~~~Lk~i~~~~~G~d~id~~~~~~~gi~v~n~p---------------------   96 (529)
T 1ygy_A           40 AAVPEADALLVRSAT--TVDAEVLAAAPKLKIVARAGVGLDNVDVDAATARGVLVVNAP---------------------   96 (529)
T ss_dssp             HHGGGCSEEEECSSS--CBCHHHHHTCTTCCEEEESSSCCTTBCHHHHHHTTCEEECCT---------------------
T ss_pred             HHhcCCEEEEEcCCC--CCCHHHHhhCCCCcEEEECCcCcCccCHhHHHhCCeEEEECC---------------------
Confidence            346899999876444  367888998888888989999988899888775544333221                     


Q ss_pred             cccccCCCChhHHHh------hHHHHHHHHHHHHhcCCCCCCCCccccCChhhHHHHHHhcCCcccc----ccccccHHH
Q psy4626         208 LVNLSCSSLPSFVVS------ITACTQALALIELFNAPSGRYKSDVYLLPKKMDEYVASLHLPTFDA----HLTELSDEQ  277 (542)
Q Consensus       208 Lvnl~~~thp~~vmd------~sfa~q~la~~~L~~~~~~~~~~gv~~lp~~~d~~VA~l~L~~lg~----~i~~lt~~~  277 (542)
                           . .+...+-.      ++++.++-......++  ++|...-+ .+.       ++..+++|+    .|++..+.+
T Consensus        97 -----~-~~~~~vAE~~~~~~l~~~R~~~~~~~~~~~--g~w~~~~~-~~~-------~l~g~~vgIIG~G~IG~~vA~~  160 (529)
T 1ygy_A           97 -----T-SNIHSAAEHALALLLAASRQIPAADASLRE--HTWKRSSF-SGT-------EIFGKTVGVVGLGRIGQLVAQR  160 (529)
T ss_dssp             -----T-SSHHHHHHHHHHHHHHHHTTHHHHHHHHHT--TCCCGGGC-CBC-------CCTTCEEEEECCSHHHHHHHHH
T ss_pred             -----C-cchHHHHHHHHHHHHHHHhhhHHHHHHHHh--CCCcccCc-Ccc-------ccCCCEEEEEeeCHHHHHHHHH
Confidence                 0 01111111      1222222211222222  56754211 111       234455665    788888899


Q ss_pred             HhhcCCC--CCCCCCCC-ccccCCeeeeehhhhcccCcEEEEcc----CCCCccCHhHHhcCCCCcEEEccCCCCccccc
Q psy4626         278 AKYMGLN--KAGPFKPS-YYSMDGFSVVKLNEVIRTVDIVVTAT----GNKNVVTREHMDKMKNGCVVCNMGHSNTEIDV  350 (542)
Q Consensus       278 a~~lg~~--e~~p~~a~-ea~mdG~~v~~~~~a~~~~d~~~t~t----g~~~vi~~~~~~~mk~gail~n~gh~~~Ei~~  350 (542)
                      ++.+|+.  -.||.... +|...|+...+++++++++|+|++++    .++++|+.+.++.||+|++++|+|++.. +|-
T Consensus       161 l~~~G~~V~~~d~~~~~~~a~~~g~~~~~l~e~~~~aDvV~l~~P~~~~t~~~i~~~~~~~~k~g~ilin~arg~i-v~~  239 (529)
T 1ygy_A          161 IAAFGAYVVAYDPYVSPARAAQLGIELLSLDDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGL-VDE  239 (529)
T ss_dssp             HHTTTCEEEEECTTSCHHHHHHHTCEECCHHHHHHHCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCTTS-BCH
T ss_pred             HHhCCCEEEEECCCCChhHHHhcCcEEcCHHHHHhcCCEEEECCCCchHHHHHhCHHHHhCCCCCCEEEECCCCch-hhH
Confidence            9988873  33555432 24456888888999999999999965    7889999999999999999999999887 454


Q ss_pred             ccc
Q psy4626         351 NSL  353 (542)
Q Consensus       351 ~~l  353 (542)
                      .+|
T Consensus       240 ~aL  242 (529)
T 1ygy_A          240 AAL  242 (529)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            333

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=98.41  E-value=1.4e-06  Score=88.87  Aligned_cols=119  Identities=17%  Similarity=0.164  Sum_probs=87.6

Q ss_pred             HHHHHHHHhhcCccccCcEEEEEc-CChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce-eeC-----HHHH----
Q psy4626          61 ESIIDSLKRSTDVMFGGKQVVLCG-YGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVK-----LNEV----  129 (542)
Q Consensus        61 ~s~~~ai~r~~~~~l~GktVvViG-~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~-v~~-----l~e~----  129 (542)
                      -..|+++.+.. ...+|++|+|+| .|.||+.+++.++.+|++|+++++++.+...+...|.+ +++     ..+.    
T Consensus       134 ~ta~~~l~~~~-~~~~g~~vlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~~~~~~~~~~~~~~~~~~  212 (334)
T 3qwb_A          134 LTALSFTNEAY-HVKKGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVASTDEKLKIAKEYGAEYLINASKEDILRQVLKF  212 (334)
T ss_dssp             HHHHHHHHTTS-CCCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTTSCHHHHHHHH
T ss_pred             HHHHHHHHHhc-cCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCcEEEeCCCchHHHHHHHH
Confidence            34455655442 245899999999 79999999999999999999999999888888888875 322     1121    


Q ss_pred             h--cCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCCC---cccChHhhcCCCcce
Q psy4626         130 I--RTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSN---TEIDVNSLRTPDLTW  182 (542)
Q Consensus       130 l--~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g~---~eid~~aL~~~~l~v  182 (542)
                      .  .+.|++++++|. ..+ ...++.+++++.++.+|...   ..++...+..+++++
T Consensus       213 ~~~~g~D~vid~~g~-~~~-~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~  268 (334)
T 3qwb_A          213 TNGKGVDASFDSVGK-DTF-EISLAALKRKGVFVSFGNASGLIPPFSITRLSPKNITL  268 (334)
T ss_dssp             TTTSCEEEEEECCGG-GGH-HHHHHHEEEEEEEEECCCTTCCCCCBCGGGGTTTTCEE
T ss_pred             hCCCCceEEEECCCh-HHH-HHHHHHhccCCEEEEEcCCCCCCCCcchhhhhhCceEE
Confidence            1  368999999987 344 47899999999999998753   244555554444433

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=98.40  E-value=5.2e-07  Score=93.58  Aligned_cols=97  Identities=13%  Similarity=0.207  Sum_probs=76.1

Q ss_pred             CcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCc---hhhhhhhcCCceeeC---HHHHh----cCCcEEEEcCCCcccC
Q psy4626          77 GKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDP---ICALQACMDGFSVVK---LNEVI----RTVDIVVTATGNKNVV  146 (542)
Q Consensus        77 GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp---~r~~~A~~~G~~v~~---l~e~l----~~aDvVi~atG~~~lI  146 (542)
                      |++|+|+|.|.||+.+++.++.+|++|+++++++   .+...+...|++.++   +.+.+    .++|++|+++|....+
T Consensus       181 g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~~~ga~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~~  260 (366)
T 2cdc_A          181 CRKVLVVGTGPIGVLFTLLFRTYGLEVWMANRREPTEVEQTVIEETKTNYYNSSNGYDKLKDSVGKFDVIIDATGADVNI  260 (366)
T ss_dssp             TCEEEEESCHHHHHHHHHHHHHHTCEEEEEESSCCCHHHHHHHHHHTCEEEECTTCSHHHHHHHCCEEEEEECCCCCTHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCccchHHHHHHHHhCCceechHHHHHHHHHhCCCCCEEEECCCChHHH
Confidence            9999999999999999999999999999999988   777666667765432   11111    4689999999976554


Q ss_pred             -CHHHHhccCCCeEEEeccCCC---cccChHh
Q psy4626         147 -TREHMDKMKNGCVVCNMGHSN---TEIDVNS  174 (542)
Q Consensus       147 -~~e~l~~mk~GailvnvG~g~---~eid~~a  174 (542)
                       . +.++.|++++.++++|...   .+++...
T Consensus       261 ~~-~~~~~l~~~G~iv~~g~~~~~~~~~~~~~  291 (366)
T 2cdc_A          261 LG-NVIPLLGRNGVLGLFGFSTSGSVPLDYKT  291 (366)
T ss_dssp             HH-HHGGGEEEEEEEEECSCCCSCEEEEEHHH
T ss_pred             HH-HHHHHHhcCCEEEEEecCCCCccccChhh
Confidence             4 6889999999999998753   3445444

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}

Probab=98.40  E-value=1.3e-06  Score=90.78  Aligned_cols=120  Identities=15%  Similarity=0.166  Sum_probs=88.4

Q ss_pred             HHHHHHHhhcCcc----ccCcEEEEEc-CChhHHHHHHHHHh-CCCEEEEEeCCchhhhhhhcCCce-eeC----HHHHh
Q psy4626          62 SIIDSLKRSTDVM----FGGKQVVLCG-YGEVGKGCCQSLKG-LGCVIYITEIDPICALQACMDGFS-VVK----LNEVI  130 (542)
Q Consensus        62 s~~~ai~r~~~~~----l~GktVvViG-~G~IG~~vA~~l~~-~Ga~Viv~d~dp~r~~~A~~~G~~-v~~----l~e~l  130 (542)
                      ..|+++.+..+..    ..|++|+|+| .|.+|+.+++.++. .|++|++++.++.+...+...|++ +++    ..+.+
T Consensus       153 ta~~al~~~~~~~~~~~~~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~~~~lGad~vi~~~~~~~~~v  232 (363)
T 4dvj_A          153 TAWEAFFDRLDVNKPVPGAAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWVKSLGAHHVIDHSKPLAAEV  232 (363)
T ss_dssp             HHHHHHHTTSCTTSCCTTSEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHTTCSEEECTTSCHHHHH
T ss_pred             HHHHHHHHhhCcCcCcCCCCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHcCCCEEEeCCCCHHHHH
Confidence            4456654433222    1799999999 89999999999998 589999999999888888888876 333    22222


Q ss_pred             -----cCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCCCcccChHhhcCCCccee
Q psy4626         131 -----RTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWE  183 (542)
Q Consensus       131 -----~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g~~eid~~aL~~~~l~v~  183 (542)
                           .++|++++|+|....+. +.++.+++++.++.+|. ...++...+..+++++.
T Consensus       233 ~~~~~~g~Dvvid~~g~~~~~~-~~~~~l~~~G~iv~~g~-~~~~~~~~~~~k~~~i~  288 (363)
T 4dvj_A          233 AALGLGAPAFVFSTTHTDKHAA-EIADLIAPQGRFCLIDD-PSAFDIMLFKRKAVSIH  288 (363)
T ss_dssp             HTTCSCCEEEEEECSCHHHHHH-HHHHHSCTTCEEEECSC-CSSCCGGGGTTTTCEEE
T ss_pred             HHhcCCCceEEEECCCchhhHH-HHHHHhcCCCEEEEECC-CCccchHHHhhccceEE
Confidence                 37999999999776664 78999999999999864 34556655555544443

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=98.40  E-value=6.4e-07  Score=93.25  Aligned_cols=104  Identities=23%  Similarity=0.264  Sum_probs=82.6

Q ss_pred             HHHHHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCCC-EEEEEeCCchhhhhhhcCCce-eeCHH-------HHh-
Q psy4626          61 ESIIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMDGFS-VVKLN-------EVI-  130 (542)
Q Consensus        61 ~s~~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga-~Viv~d~dp~r~~~A~~~G~~-v~~l~-------e~l-  130 (542)
                      ...|+++.+.. ...+|++|+|+|.|+||..+++.++.+|+ +|+++++++.|...+...|++ +++..       +.+ 
T Consensus       179 ~ta~~al~~~~-~~~~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~i~  257 (378)
T 3uko_A          179 PTGLGAVWNTA-KVEPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKKFGVNEFVNPKDHDKPIQEVIV  257 (378)
T ss_dssp             HHHHHHHHTTT-CCCTTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHHTTTCCEEECGGGCSSCHHHHHH
T ss_pred             HHHHHHHHhhc-CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCcEEEccccCchhHHHHHH
Confidence            34456654432 24579999999999999999999999999 899999999999888888875 33322       222 


Q ss_pred             ----cCCcEEEEcCCCcccCCHHHHhccCCC-eEEEeccCC
Q psy4626         131 ----RTVDIVVTATGNKNVVTREHMDKMKNG-CVVCNMGHS  166 (542)
Q Consensus       131 ----~~aDvVi~atG~~~lI~~e~l~~mk~G-ailvnvG~g  166 (542)
                          .++|++|+|+|....+. +.++.+++| +.++.+|..
T Consensus       258 ~~~~gg~D~vid~~g~~~~~~-~~~~~l~~g~G~iv~~G~~  297 (378)
T 3uko_A          258 DLTDGGVDYSFECIGNVSVMR-AALECCHKGWGTSVIVGVA  297 (378)
T ss_dssp             HHTTSCBSEEEECSCCHHHHH-HHHHTBCTTTCEEEECSCC
T ss_pred             HhcCCCCCEEEECCCCHHHHH-HHHHHhhccCCEEEEEccc
Confidence                36999999999876764 789999996 999999964

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*

Probab=98.39  E-value=5.2e-07  Score=92.63  Aligned_cols=118  Identities=19%  Similarity=0.302  Sum_probs=85.8

Q ss_pred             HHHHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCCC-EEEEEeCCchhhhhhhcCCce-eeC-----HHHHh----
Q psy4626          62 SIIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMDGFS-VVK-----LNEVI----  130 (542)
Q Consensus        62 s~~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga-~Viv~d~dp~r~~~A~~~G~~-v~~-----l~e~l----  130 (542)
                      ..++++.+..+ . +|++|+|+|.|.+|+.+++.++.+|+ +|+++++++.+...+... .+ +++     +.+.+    
T Consensus       152 ta~~~l~~~~~-~-~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~l-a~~v~~~~~~~~~~~~~~~~  228 (343)
T 2dq4_A          152 NAVHTVYAGSG-V-SGKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNPYRLAFARPY-ADRLVNPLEEDLLEVVRRVT  228 (343)
T ss_dssp             HHHHHHHSTTC-C-TTSCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHGGGTTT-CSEEECTTTSCHHHHHHHHH
T ss_pred             HHHHHHHHhCC-C-CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-HHhccCcCccCHHHHHHHhc
Confidence            34667652323 3 89999999999999999999999999 999999998887666555 43 332     22222    


Q ss_pred             -cCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCCC--cccCh-HhhcCCCccee
Q psy4626         131 -RTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSN--TEIDV-NSLRTPDLTWE  183 (542)
Q Consensus       131 -~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g~--~eid~-~aL~~~~l~v~  183 (542)
                       .++|++|+++|....+ .+.++.|++++.++.+|...  ..++. ..+..+++++.
T Consensus       229 ~~g~D~vid~~g~~~~~-~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~i~  284 (343)
T 2dq4_A          229 GSGVEVLLEFSGNEAAI-HQGLMALIPGGEARILGIPSDPIRFDLAGELVMRGITAF  284 (343)
T ss_dssp             SSCEEEEEECSCCHHHH-HHHHHHEEEEEEEEECCCCSSCEEECHHHHTGGGTCEEE
T ss_pred             CCCCCEEEECCCCHHHH-HHHHHHHhcCCEEEEEecCCCCceeCcHHHHHhCceEEE
Confidence             3689999999986566 47899999999999998753  34555 44444444443

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}

Probab=98.38  E-value=7.3e-07  Score=90.70  Aligned_cols=102  Identities=18%  Similarity=0.181  Sum_probs=80.3

Q ss_pred             HHHHHHHHhhcCccccCcEEEEEc-CChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce-eeC------HHHHhcC
Q psy4626          61 ESIIDSLKRSTDVMFGGKQVVLCG-YGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVK------LNEVIRT  132 (542)
Q Consensus        61 ~s~~~ai~r~~~~~l~GktVvViG-~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~-v~~------l~e~l~~  132 (542)
                      ...|+++.++  ...+|++|+|+| .|.+|+.+++.++.+|++|+++. ++.+...+...|++ +++      ..+.+.+
T Consensus       139 ~ta~~al~~~--~~~~g~~vlV~Ga~G~vG~~a~q~a~~~Ga~vi~~~-~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~g  215 (321)
T 3tqh_A          139 LTALQALNQA--EVKQGDVVLIHAGAGGVGHLAIQLAKQKGTTVITTA-SKRNHAFLKALGAEQCINYHEEDFLLAISTP  215 (321)
T ss_dssp             HHHHHHHHHT--TCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEE-CHHHHHHHHHHTCSEEEETTTSCHHHHCCSC
T ss_pred             HHHHHHHHhc--CCCCCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEe-ccchHHHHHHcCCCEEEeCCCcchhhhhccC
Confidence            3456777443  346899999997 89999999999999999999987 45566667777875 332      3344578


Q ss_pred             CcEEEEcCCCcccCCHHHHhccCCCeEEEeccCCC
Q psy4626         133 VDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSN  167 (542)
Q Consensus       133 aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g~  167 (542)
                      +|++++|+|....  .+.++.+++++.++.+|...
T Consensus       216 ~D~v~d~~g~~~~--~~~~~~l~~~G~iv~~g~~~  248 (321)
T 3tqh_A          216 VDAVIDLVGGDVG--IQSIDCLKETGCIVSVPTIT  248 (321)
T ss_dssp             EEEEEESSCHHHH--HHHGGGEEEEEEEEECCSTT
T ss_pred             CCEEEECCCcHHH--HHHHHhccCCCEEEEeCCCC
Confidence            9999999997654  57899999999999998654

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=98.38  E-value=9.9e-07  Score=90.67  Aligned_cols=119  Identities=13%  Similarity=0.115  Sum_probs=86.8

Q ss_pred             HHHHHHHhhcCccccCcEEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce-eeC------HHHHh---
Q psy4626          62 SIIDSLKRSTDVMFGGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVK------LNEVI---  130 (542)
Q Consensus        62 s~~~ai~r~~~~~l~GktVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~-v~~------l~e~l---  130 (542)
                      ..|+++.+.  ....|++|+|+|. |.||+.+++.++..|++|+++++++.+...+...|.. +.+      +.+.+   
T Consensus       157 ta~~~l~~~--~~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~  234 (347)
T 2hcy_A          157 TVYKALKSA--NLMAGHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEGKEELFRSIGGEVFIDFTKEKDIVGAVLKA  234 (347)
T ss_dssp             HHHHHHHTT--TCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSTTHHHHHHHTTCCEEEETTTCSCHHHHHHHH
T ss_pred             HHHHHHHhc--CCCCCCEEEEECCCchHHHHHHHHHHHCCCcEEEEcCCHHHHHHHHHcCCceEEecCccHhHHHHHHHH
Confidence            456676655  2457999999999 8999999999999999999999998887766666754 222      22222   


Q ss_pred             --cCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCCC---cccChHhhcCCCccee
Q psy4626         131 --RTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSN---TEIDVNSLRTPDLTWE  183 (542)
Q Consensus       131 --~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g~---~eid~~aL~~~~l~v~  183 (542)
                        .+.|++|+++|....+ .+.++.|++++.++++|...   ..++...+..+++++.
T Consensus       235 ~~~~~D~vi~~~g~~~~~-~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~i~  291 (347)
T 2hcy_A          235 TDGGAHGVINVSVSEAAI-EASTRYVRANGTTVLVGMPAGAKCCSDVFNQVVKSISIV  291 (347)
T ss_dssp             HTSCEEEEEECSSCHHHH-HHHTTSEEEEEEEEECCCCTTCEEEEEHHHHHHTTCEEE
T ss_pred             hCCCCCEEEECCCcHHHH-HHHHHHHhcCCEEEEEeCCCCCCCCCCHHHHhhCCcEEE
Confidence              1689999999875555 47889999999999998754   2344444433444433

>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*

Probab=98.38  E-value=1.7e-06  Score=88.59  Aligned_cols=121  Identities=14%  Similarity=0.123  Sum_probs=90.6

Q ss_pred             HHHHHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhC-CCEEEEEeCCchhhhhhhcCCce-eeC-----HHH-H---
Q psy4626          61 ESIIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGL-GCVIYITEIDPICALQACMDGFS-VVK-----LNE-V---  129 (542)
Q Consensus        61 ~s~~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~-Ga~Viv~d~dp~r~~~A~~~G~~-v~~-----l~e-~---  129 (542)
                      ...|+++.++.  ..+|++|+|+|.|.+|...++.++.. |++|++++.++.|...+...|++ +++     ..+ +   
T Consensus       150 ~ta~~~l~~~~--~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~~~r~~~~~~~Ga~~~i~~~~~~~~~~v~~~  227 (348)
T 4eez_A          150 VTTYKAIKVSG--VKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDINQDKLNLAKKIGADVTINSGDVNPVDEIKKI  227 (348)
T ss_dssp             HHHHHHHHHHT--CCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHHHTTCSEEEEC-CCCHHHHHHHH
T ss_pred             eeEEeeecccC--CCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECcHHHhhhhhhcCCeEEEeCCCCCHHHHhhhh
Confidence            34466665552  46899999999999999999999865 67999999999998888888875 322     222 2   


Q ss_pred             h--cCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCCC--cccChHhhcCCCcceee
Q psy4626         130 I--RTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSN--TEIDVNSLRTPDLTWEK  184 (542)
Q Consensus       130 l--~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g~--~eid~~aL~~~~l~v~~  184 (542)
                      .  .++|++++++|....+. ..++.+++++.++.+|...  ..+++..+..+++++.+
T Consensus       228 t~g~g~d~~~~~~~~~~~~~-~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~g  285 (348)
T 4eez_A          228 TGGLGVQSAIVCAVARIAFE-QAVASLKPMGKMVAVAVPNTEMTLSVPTVVFDGVEVAG  285 (348)
T ss_dssp             TTSSCEEEEEECCSCHHHHH-HHHHTEEEEEEEEECCCCSCEEEECHHHHHHSCCEEEE
T ss_pred             cCCCCceEEEEeccCcchhh-eeheeecCCceEEEEeccCCCCccCHHHHHhCCeEEEE
Confidence            1  36889999998877774 7899999999999998764  45666666555555544

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=98.38  E-value=1.2e-06  Score=89.99  Aligned_cols=104  Identities=16%  Similarity=0.248  Sum_probs=76.9

Q ss_pred             HHHHHHHHhhcCccccCcEEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCcee-eC----HHHH----h
Q psy4626          61 ESIIDSLKRSTDVMFGGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV-VK----LNEV----I  130 (542)
Q Consensus        61 ~s~~~ai~r~~~~~l~GktVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v-~~----l~e~----l  130 (542)
                      ...|+++.+.. ....|++|+|+|+ |.||+.+++.++.+|++|++++.++.+...+...|++. .+    ..+.    .
T Consensus       145 ~ta~~~l~~~~-~~~~g~~VlV~Gasg~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~~v~~~~~~~~~~v~~~~  223 (342)
T 4eye_A          145 HTMYFAYARRG-QLRAGETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVNRTAATEFVKSVGADIVLPLEEGWAKAVREAT  223 (342)
T ss_dssp             HHHHHHHHTTS-CCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCSEEEESSTTHHHHHHHHT
T ss_pred             HHHHHHHHHhc-CCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCcEEecCchhHHHHHHHHh
Confidence            34566664432 2457999999998 99999999999999999999999998887777777653 21    2222    2


Q ss_pred             --cCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCCC
Q psy4626         131 --RTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSN  167 (542)
Q Consensus       131 --~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g~  167 (542)
                        .+.|++|+|+|.. .+ .+.++.+++++.++.+|...
T Consensus       224 ~~~g~Dvvid~~g~~-~~-~~~~~~l~~~G~iv~~G~~~  260 (342)
T 4eye_A          224 GGAGVDMVVDPIGGP-AF-DDAVRTLASEGRLLVVGFAA  260 (342)
T ss_dssp             TTSCEEEEEESCC---CH-HHHHHTEEEEEEEEEC----
T ss_pred             CCCCceEEEECCchh-HH-HHHHHhhcCCCEEEEEEccC
Confidence              2699999999875 34 47899999999999998653

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=98.37  E-value=4.4e-06  Score=87.81  Aligned_cols=106  Identities=20%  Similarity=0.218  Sum_probs=85.1

Q ss_pred             hcCccccCcEEEEEcCChhHHHHHHHHHhCCC-EEEEEeCC----chhh---------hhhhcCCc--eeeCHHHHhcCC
Q psy4626          70 STDVMFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEID----PICA---------LQACMDGF--SVVKLNEVIRTV  133 (542)
Q Consensus        70 ~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga-~Viv~d~d----p~r~---------~~A~~~G~--~v~~l~e~l~~a  133 (542)
                      ..+..+...+|+|+|.|..|.++|+.+.++|+ +|+++|++    ..|.         ..|.....  ...++.++++++
T Consensus       185 i~g~~l~~~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~Gli~~~R~~~~L~~~k~~~A~~~~~~~~~~~L~eav~~A  264 (388)
T 1vl6_A          185 LTEKKIEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGILNENDPETCLNEYHLEIARITNPERLSGDLETALEGA  264 (388)
T ss_dssp             HHTCCTTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCTTSGGGCSSHHHHHHHHTSCTTCCCSCHHHHHTTC
T ss_pred             HhCCCCCCcEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCcccCCCcccccCHHHHHHHHhhhccCchhhHHHHHccC
Confidence            34557889999999999999999999999999 89999987    4442         22322211  134688999999


Q ss_pred             cEEEEcCCCcccCCHHHHhccCCCeEEEeccCCCcccChHhhc
Q psy4626         134 DIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLR  176 (542)
Q Consensus       134 DvVi~atG~~~lI~~e~l~~mk~GailvnvG~g~~eid~~aL~  176 (542)
                      |++|.+++ +++++++.++.|+++.+++..+....|+..+...
T Consensus       265 DVlIG~Sa-p~l~t~emVk~Ma~~pIIfalSNPt~E~~p~~a~  306 (388)
T 1vl6_A          265 DFFIGVSR-GNILKPEWIKKMSRKPVIFALANPVPEIDPELAR  306 (388)
T ss_dssp             SEEEECSC-SSCSCHHHHTTSCSSCEEEECCSSSCSSCHHHHH
T ss_pred             CEEEEeCC-CCccCHHHHHhcCCCCEEEEcCCCCCCCCHHHHH
Confidence            99999998 7999999999999999999988876677766554

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}

Probab=98.36  E-value=5.3e-07  Score=91.39  Aligned_cols=102  Identities=14%  Similarity=0.211  Sum_probs=76.0

Q ss_pred             HHHHHHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCcee-eC-HHHHhcCCcEEE
Q psy4626          60 RESIIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV-VK-LNEVIRTVDIVV  137 (542)
Q Consensus        60 ~~s~~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v-~~-l~e~l~~aDvVi  137 (542)
                      ....|+++.++  ...+|++|+|.|.|.+|+.+++.++.+|++|++++ ++.+...+...|++. ++ .+++-.++|+++
T Consensus       128 ~~ta~~al~~~--~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~-~~~~~~~~~~lGa~~v~~d~~~v~~g~Dvv~  204 (315)
T 3goh_A          128 LLTAWQAFEKI--PLTKQREVLIVGFGAVNNLLTQMLNNAGYVVDLVS-ASLSQALAAKRGVRHLYREPSQVTQKYFAIF  204 (315)
T ss_dssp             HHHHHHHHTTS--CCCSCCEEEEECCSHHHHHHHHHHHHHTCEEEEEC-SSCCHHHHHHHTEEEEESSGGGCCSCEEEEE
T ss_pred             HHHHHHHHhhc--CCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEE-ChhhHHHHHHcCCCEEEcCHHHhCCCccEEE
Confidence            34557777333  34689999999999999999999999999999999 888888888888763 32 111225799999


Q ss_pred             EcCCCcccCCHHHHhccCCCeEEEeccCC
Q psy4626         138 TATGNKNVVTREHMDKMKNGCVVCNMGHS  166 (542)
Q Consensus       138 ~atG~~~lI~~e~l~~mk~GailvnvG~g  166 (542)
                      +|+|....  .+.++.+++++.++.+|..
T Consensus       205 d~~g~~~~--~~~~~~l~~~G~~v~~g~~  231 (315)
T 3goh_A          205 DAVNSQNA--AALVPSLKANGHIICIQDR  231 (315)
T ss_dssp             CC---------TTGGGEEEEEEEEEECCC
T ss_pred             ECCCchhH--HHHHHHhcCCCEEEEEeCC
Confidence            99987654  3688999999999998753

>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1

Probab=98.32  E-value=1.8e-06  Score=89.41  Aligned_cols=119  Identities=16%  Similarity=0.190  Sum_probs=86.0

Q ss_pred             HHHHHHHHhh-cCccccCcEEEEEcCChhHHHHHHHHHhC-CCEEEEEeCCchhhhhhhcCCce-eeCH----HHH----
Q psy4626          61 ESIIDSLKRS-TDVMFGGKQVVLCGYGEVGKGCCQSLKGL-GCVIYITEIDPICALQACMDGFS-VVKL----NEV----  129 (542)
Q Consensus        61 ~s~~~ai~r~-~~~~l~GktVvViG~G~IG~~vA~~l~~~-Ga~Viv~d~dp~r~~~A~~~G~~-v~~l----~e~----  129 (542)
                      ...++++.+. . ...+|++|+|+|.|.+|+.+++.++.+ |++|++++.++.+...+...|++ +++.    .+.    
T Consensus       171 ~ta~~al~~~~~-~~~~g~~VlV~GaG~vG~~avqlak~~~Ga~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~v~~~  249 (359)
T 1h2b_A          171 ITAYRAVKKAAR-TLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGADHVVDARRDPVKQVMEL  249 (359)
T ss_dssp             HHHHHHHHHHHT-TCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTTCSEEEETTSCHHHHHHHH
T ss_pred             HHHHHHHHhhcc-CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHhCCCEEEeccchHHHHHHHH
Confidence            4457777662 2 245799999999999999999999999 99999999999888888888875 3332    121    


Q ss_pred             h--cCCcEEEEcCCCcc--cCCHHHHhccCCCeEEEeccCCCc-ccChHhhcCCCccee
Q psy4626         130 I--RTVDIVVTATGNKN--VVTREHMDKMKNGCVVCNMGHSNT-EIDVNSLRTPDLTWE  183 (542)
Q Consensus       130 l--~~aDvVi~atG~~~--lI~~e~l~~mk~GailvnvG~g~~-eid~~aL~~~~l~v~  183 (542)
                      .  .++|++|+++|...  .+. +.++.  +++.++.+|.... +++...+..+++++.
T Consensus       250 ~~g~g~Dvvid~~G~~~~~~~~-~~~~~--~~G~~v~~g~~~~~~~~~~~~~~~~~~i~  305 (359)
T 1h2b_A          250 TRGRGVNVAMDFVGSQATVDYT-PYLLG--RMGRLIIVGYGGELRFPTIRVISSEVSFE  305 (359)
T ss_dssp             TTTCCEEEEEESSCCHHHHHHG-GGGEE--EEEEEEECCCSSCCCCCHHHHHHTTCEEE
T ss_pred             hCCCCCcEEEECCCCchHHHHH-HHhhc--CCCEEEEEeCCCCCCCCHHHHHhCCcEEE
Confidence            1  26899999999875  554 56666  8889998886532 455544443444433

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=98.30  E-value=1.4e-06  Score=89.60  Aligned_cols=113  Identities=13%  Similarity=0.185  Sum_probs=84.7

Q ss_pred             HHHHHHHHhhcCccccCcEEEEEcCC-hhHHHHHHHHHhC-CCEEEEEeCCchhhhhhhcCCce-eeCH---------HH
Q psy4626          61 ESIIDSLKRSTDVMFGGKQVVLCGYG-EVGKGCCQSLKGL-GCVIYITEIDPICALQACMDGFS-VVKL---------NE  128 (542)
Q Consensus        61 ~s~~~ai~r~~~~~l~GktVvViG~G-~IG~~vA~~l~~~-Ga~Viv~d~dp~r~~~A~~~G~~-v~~l---------~e  128 (542)
                      ...|+++.++  ....|++|+|+|.| .||+.+++.++.. |++|+++++++.+...+...|.+ +++.         .+
T Consensus       157 ~ta~~~l~~~--~~~~g~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  234 (347)
T 1jvb_A          157 ITTYRAVRKA--SLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGADYVINASMQDPLAEIRR  234 (347)
T ss_dssp             HHHHHHHHHT--TCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHH
T ss_pred             HHHHHHHHhc--CCCCCCEEEEECCCccHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCCEEecCCCccHHHHHHH
Confidence            4457777654  34589999999999 9999999999999 99999999999887766666654 2221         12


Q ss_pred             Hh--cCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCCC-c-ccChHhhc
Q psy4626         129 VI--RTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSN-T-EIDVNSLR  176 (542)
Q Consensus       129 ~l--~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g~-~-eid~~aL~  176 (542)
                      ..  .+.|++|+++|....+. +.++.+++++.++.+|... . +++...+.
T Consensus       235 ~~~~~~~d~vi~~~g~~~~~~-~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~  285 (347)
T 1jvb_A          235 ITESKGVDAVIDLNNSEKTLS-VYPKALAKQGKYVMVGLFGADLHYHAPLIT  285 (347)
T ss_dssp             HTTTSCEEEEEESCCCHHHHT-TGGGGEEEEEEEEECCSSCCCCCCCHHHHH
T ss_pred             HhcCCCceEEEECCCCHHHHH-HHHHHHhcCCEEEEECCCCCCCCCCHHHHH
Confidence            22  36899999999865664 6789999999999998653 2 44544443

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=98.30  E-value=1.7e-06  Score=88.51  Aligned_cols=92  Identities=22%  Similarity=0.278  Sum_probs=75.2

Q ss_pred             cCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCcee-eCHHHHhcCCcEEEEcCCCcccCCH-----H
Q psy4626          76 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV-VKLNEVIRTVDIVVTATGNKNVVTR-----E  149 (542)
Q Consensus        76 ~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v-~~l~e~l~~aDvVi~atG~~~lI~~-----e  149 (542)
                      ..++|+|||+|.+|..+|+.|...|.+|+++|+++.+.......|... .+++++++++|+||.|+.+...+..     +
T Consensus        30 ~~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~~~~e~~~~aDvVi~~vp~~~~~~~v~~~~~  109 (320)
T 4dll_A           30 YARKITFLGTGSMGLPMARRLCEAGYALQVWNRTPARAASLAALGATIHEQARAAARDADIVVSMLENGAVVQDVLFAQG  109 (320)
T ss_dssp             CCSEEEEECCTTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTTCEEESSHHHHHTTCSEEEECCSSHHHHHHHHTTTC
T ss_pred             CCCEEEEECccHHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHHCCCEeeCCHHHHHhcCCEEEEECCCHHHHHHHHcchh
Confidence            457999999999999999999999999999999998877666667764 5788899999999999875433321     2


Q ss_pred             HHhccCCCeEEEeccCCC
Q psy4626         150 HMDKMKNGCVVCNMGHSN  167 (542)
Q Consensus       150 ~l~~mk~GailvnvG~g~  167 (542)
                      .++.+++|.++++++...
T Consensus       110 ~~~~l~~~~~vi~~st~~  127 (320)
T 4dll_A          110 VAAAMKPGSLFLDMASIT  127 (320)
T ss_dssp             HHHHCCTTCEEEECSCCC
T ss_pred             HHhhCCCCCEEEecCCCC
Confidence            344689999999998764

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A

Probab=98.30  E-value=2.6e-06  Score=90.68  Aligned_cols=123  Identities=20%  Similarity=0.136  Sum_probs=88.8

Q ss_pred             HHHHHHHHhh-cCccccCcEEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce-eeCHH----------
Q psy4626          61 ESIIDSLKRS-TDVMFGGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVKLN----------  127 (542)
Q Consensus        61 ~s~~~ai~r~-~~~~l~GktVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~-v~~l~----------  127 (542)
                      ...|+++.+. .....+|++|+|+|. |.||+.+++.++.+|++|++++.++.+...+...|++ +++..          
T Consensus       204 ~tA~~al~~~~~~~~~~g~~VlV~GasG~iG~~a~qla~~~Ga~vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~  283 (447)
T 4a0s_A          204 GTAYRMLVSDRGAQMKQGDIVLIWGASGGLGSYAIQFVKNGGGIPVAVVSSAQKEAAVRALGCDLVINRAELGITDDIAD  283 (447)
T ss_dssp             HHHHHHHTSTTTTCCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCCCEEEHHHHTCCTTGGG
T ss_pred             HHHHHHHHhhhccCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCCEEEecccccccccccc
Confidence            3456666421 123468999999998 9999999999999999999999999888888888875 23211          


Q ss_pred             -------------HH----h-cCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCCC---cccChHhhcCCCcceeee
Q psy4626         128 -------------EV----I-RTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSN---TEIDVNSLRTPDLTWEKV  185 (542)
Q Consensus       128 -------------e~----l-~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g~---~eid~~aL~~~~l~v~~~  185 (542)
                                   +.    . .+.|++|+++|.. .+ ...+..+++++.++++|...   ..++...+..+.+++.+.
T Consensus       284 ~~~~~~~~~~~~~~~v~~~~g~g~Dvvid~~G~~-~~-~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~i~g~  360 (447)
T 4a0s_A          284 DPRRVVETGRKLAKLVVEKAGREPDIVFEHTGRV-TF-GLSVIVARRGGTVVTCGSSSGYLHTFDNRYLWMKLKKIVGS  360 (447)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHSSCCSEEEECSCHH-HH-HHHHHHSCTTCEEEESCCTTCSEEEEEHHHHHHTTCEEEEC
T ss_pred             cccccchhhhHHHHHHHHHhCCCceEEEECCCch-HH-HHHHHHHhcCCEEEEEecCCCcccccCHHHHHhCCCEEEec
Confidence                         11    1 3699999999974 44 46889999999999999653   345555554444444443

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=98.29  E-value=2.1e-06  Score=88.62  Aligned_cols=120  Identities=16%  Similarity=0.227  Sum_probs=87.2

Q ss_pred             HHHHHHHHhhcCccccCcEEEEE-cCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce-eeC-----HHHHh---
Q psy4626          61 ESIIDSLKRSTDVMFGGKQVVLC-GYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVK-----LNEVI---  130 (542)
Q Consensus        61 ~s~~~ai~r~~~~~l~GktVvVi-G~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~-v~~-----l~e~l---  130 (542)
                      ...|+++.+.. ...+|++|+|+ |.|.||+.+++.++..|++|+++++++.+...+...|++ +++     ..+.+   
T Consensus       153 ~ta~~~l~~~~-~~~~g~~VlV~Gg~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~~~~~~~~~~~~~~~~  231 (353)
T 4dup_A          153 FTVWANLFQMA-GLTEGESVLIHGGTSGIGTTAIQLARAFGAEVYATAGSTGKCEACERLGAKRGINYRSEDFAAVIKAE  231 (353)
T ss_dssp             HHHHHHHTTTT-CCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHH
T ss_pred             HHHHHHHHHhc-CCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCCEEEeCCchHHHHHHHHH
Confidence            34566664332 24589999999 679999999999999999999999999988877777765 222     22222   


Q ss_pred             --cCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCCCc---c-cChHhhcCCCccee
Q psy4626         131 --RTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNT---E-IDVNSLRTPDLTWE  183 (542)
Q Consensus       131 --~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g~~---e-id~~aL~~~~l~v~  183 (542)
                        .+.|++|+|+|.. .+ ...++.+++++.++.+|....   + +++..+..+++++.
T Consensus       232 ~~~g~Dvvid~~g~~-~~-~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~~i~  288 (353)
T 4dup_A          232 TGQGVDIILDMIGAA-YF-ERNIASLAKDGCLSIIAFLGGAVAEKVNLSPIMVKRLTVT  288 (353)
T ss_dssp             HSSCEEEEEESCCGG-GH-HHHHHTEEEEEEEEECCCTTCSEEEEEECHHHHHTTCEEE
T ss_pred             hCCCceEEEECCCHH-HH-HHHHHHhccCCEEEEEEecCCCcccCCCHHHHHhcCceEE
Confidence              3699999999875 34 468999999999999986531   2 55555544444443

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=98.29  E-value=1.9e-06  Score=87.75  Aligned_cols=113  Identities=19%  Similarity=0.254  Sum_probs=84.5

Q ss_pred             HHHHHHHHhhcCccccCcEEEEEc-CChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce-eeC-----HHHH----
Q psy4626          61 ESIIDSLKRSTDVMFGGKQVVLCG-YGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVK-----LNEV----  129 (542)
Q Consensus        61 ~s~~~ai~r~~~~~l~GktVvViG-~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~-v~~-----l~e~----  129 (542)
                      .+.+.++.+.. ...+|++|+|+| .|.||+.+++.++..|++|+++++++.+...+...|++ +++     ..+.    
T Consensus       126 ~ta~~~l~~~~-~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~  204 (325)
T 3jyn_A          126 LTVQYLLRQTY-QVKPGEIILFHAAAGGVGSLACQWAKALGAKLIGTVSSPEKAAHAKALGAWETIDYSHEDVAKRVLEL  204 (325)
T ss_dssp             HHHHHHHHTTS-CCCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHH
T ss_pred             HHHHHHHHHhc-CCCCCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCCEEEeCCCccHHHHHHHH
Confidence            44555655433 245799999999 79999999999999999999999999888877777764 322     2222    


Q ss_pred             h--cCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCCCc---ccChHhhc
Q psy4626         130 I--RTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNT---EIDVNSLR  176 (542)
Q Consensus       130 l--~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g~~---eid~~aL~  176 (542)
                      .  .+.|++++++|. ..+ ...++.+++++.++.+|....   .++...+.
T Consensus       205 ~~~~g~Dvvid~~g~-~~~-~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~  254 (325)
T 3jyn_A          205 TDGKKCPVVYDGVGQ-DTW-LTSLDSVAPRGLVVSFGNASGPVSGVNLGILA  254 (325)
T ss_dssp             TTTCCEEEEEESSCG-GGH-HHHHTTEEEEEEEEECCCTTCCCCSCCTHHHH
T ss_pred             hCCCCceEEEECCCh-HHH-HHHHHHhcCCCEEEEEecCCCCCCCCCHHHHh
Confidence            1  379999999987 445 478999999999999997532   34444443

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=98.29  E-value=2e-06  Score=86.12  Aligned_cols=90  Identities=16%  Similarity=0.238  Sum_probs=73.2

Q ss_pred             cEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCcee-eCHHHHhcCCcEEEEcCCCcccCC------HHH
Q psy4626          78 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV-VKLNEVIRTVDIVVTATGNKNVVT------REH  150 (542)
Q Consensus        78 ktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v-~~l~e~l~~aDvVi~atG~~~lI~------~e~  150 (542)
                      ++|+|||+|.+|..+|+.|...|.+|+++|+++.+.......|... .++++++.++|+||.|+.+...+.      .+.
T Consensus         2 ~~i~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~aDvvi~~vp~~~~~~~v~~~~~~l   81 (287)
T 3pef_A            2 QKFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSPEKAEELAALGAERAATPCEVVESCPVTFAMLADPAAAEEVCFGKHGV   81 (287)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGGGGHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCH
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEEcCCHHHHHHHHcCcchH
Confidence            5899999999999999999999999999999998877666667764 478888999999999987543332      123


Q ss_pred             HhccCCCeEEEeccCCC
Q psy4626         151 MDKMKNGCVVCNMGHSN  167 (542)
Q Consensus       151 l~~mk~GailvnvG~g~  167 (542)
                      .+.+++|.++++++...
T Consensus        82 ~~~l~~~~~vi~~st~~   98 (287)
T 3pef_A           82 LEGIGEGRGYVDMSTVD   98 (287)
T ss_dssp             HHHCCTTCEEEECSCCC
T ss_pred             hhcCCCCCEEEeCCCCC
Confidence            35689999999998654

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=98.28  E-value=2.4e-06  Score=87.72  Aligned_cols=120  Identities=17%  Similarity=0.089  Sum_probs=86.5

Q ss_pred             HHHHHHHHhhcCccccCcEEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce-eeCH-----HHH----
Q psy4626          61 ESIIDSLKRSTDVMFGGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVKL-----NEV----  129 (542)
Q Consensus        61 ~s~~~ai~r~~~~~l~GktVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~-v~~l-----~e~----  129 (542)
                      ...|+++.+..+ ...|++|+|+|. |.+|+.+++.++.+|++|+++++++.+...+...|.+ +++.     .+.    
T Consensus       152 ~ta~~al~~~~~-~~~g~~vlV~Gasg~iG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~~~ga~~~~d~~~~~~~~~~~~~  230 (343)
T 2eih_A          152 LTAWQMVVDKLG-VRPGDDVLVMAAGSGVSVAAIQIAKLFGARVIATAGSEDKLRRAKALGADETVNYTHPDWPKEVRRL  230 (343)
T ss_dssp             HHHHHHHTTTSC-CCTTCEEEECSTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHTCSEEEETTSTTHHHHHHHH
T ss_pred             HHHHHHHHHhcC-CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcCCCEEEcCCcccHHHHHHHH
Confidence            345667655322 357999999999 9999999999999999999999998887766666654 2221     121    


Q ss_pred             h--cCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCCCc---ccChHhhcCCCccee
Q psy4626         130 I--RTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNT---EIDVNSLRTPDLTWE  183 (542)
Q Consensus       130 l--~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g~~---eid~~aL~~~~l~v~  183 (542)
                      .  .+.|++|+++| ...+ ...++.|++++.++.+|....   .++...+..+++++.
T Consensus       231 ~~~~~~d~vi~~~g-~~~~-~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~  287 (343)
T 2eih_A          231 TGGKGADKVVDHTG-ALYF-EGVIKATANGGRIAIAGASSGYEGTLPFAHVFYRQLSIL  287 (343)
T ss_dssp             TTTTCEEEEEESSC-SSSH-HHHHHHEEEEEEEEESSCCCSCCCCCCTTHHHHTTCEEE
T ss_pred             hCCCCceEEEECCC-HHHH-HHHHHhhccCCEEEEEecCCCCcCccCHHHHHhCCcEEE
Confidence            2  26899999999 4455 478999999999999987532   345444443444443

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1

Probab=98.28  E-value=1.6e-06  Score=89.12  Aligned_cols=188  Identities=10%  Similarity=0.143  Sum_probs=117.0

Q ss_pred             HHhcCCcEEEEcCCCcccCCHHHHhccCC-CeEEEeccCCCcccChHhhcCCCcceeeeccceeeEecCCCCEEEEecCC
Q psy4626         128 EVIRTVDIVVTATGNKNVVTREHMDKMKN-GCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIVLLAEG  206 (542)
Q Consensus       128 e~l~~aDvVi~atG~~~lI~~e~l~~mk~-GailvnvG~g~~eid~~aL~~~~l~v~~~~~~v~~y~~~dg~~I~LLa~G  206 (542)
                      +.++++|+++....+  -++++.++.+++ -..+...|.|-+.+|++++.++++.+....                    
T Consensus        40 ~~~~~~d~~i~~~~~--~~~~~~l~~~~~~Lk~I~~~~~G~d~id~~~~~~~gi~v~n~p--------------------   97 (320)
T 1gdh_A           40 ETAKSVDALLITLNE--KCRKEVIDRIPENIKCISTYSIGFDHIDLDACKARGIKVGNAP--------------------   97 (320)
T ss_dssp             HHHTTCSEEEEETTS--CBCHHHHHHSCTTCCEEEEESSCCTTBCHHHHHHTTCEEECCC--------------------
T ss_pred             HHhcCCEEEEECCCC--CCCHHHHHhCCccceEEEECCcccccccHHHHHhCCcEEEEcC--------------------
Confidence            456889999865322  367788999988 677888898888899988875544433221                    


Q ss_pred             CcccccCCCChhHHHhhH------HHHHHHHHHHHhcCCCCCCCCcc--ccCChhhHHHHHHhcCCcccc----cccccc
Q psy4626         207 RLVNLSCSSLPSFVVSIT------ACTQALALIELFNAPSGRYKSDV--YLLPKKMDEYVASLHLPTFDA----HLTELS  274 (542)
Q Consensus       207 rLvnl~~~thp~~vmd~s------fa~q~la~~~L~~~~~~~~~~gv--~~lp~~~d~~VA~l~L~~lg~----~i~~lt  274 (542)
                            .. ++..+-+..      ++.++-......+.  +.|...-  ...+.       ++..+++|+    .|++..
T Consensus        98 ------~~-~~~~vAE~~~~l~L~~~R~~~~~~~~~~~--g~w~~~~~~~~~~~-------~l~g~~vgIIG~G~IG~~~  161 (320)
T 1gdh_A           98 ------HG-VTVATAEIAMLLLLGSARRAGEGEKMIRT--RSWPGWEPLELVGE-------KLDNKTLGIYGFGSIGQAL  161 (320)
T ss_dssp             ------CS-CHHHHHHHHHHHHHHHHTTHHHHHHHHHT--TCCCCCCTTTTCBC-------CCTTCEEEEECCSHHHHHH
T ss_pred             ------CC-CHHHHHHHHHHHHHHHHccHHHHHHHHHc--CCCCccccccccCc-------CCCCCEEEEECcCHHHHHH
Confidence                  00 111111111      11111111122222  4664210  00011       334456666    888888


Q ss_pred             HHHHhhcCCC--CCCC-CCC-CccccCCeeee-ehhhhcccCcEEEEcc----CCCCccCHhHHhcCCCCcEEEccCCCC
Q psy4626         275 DEQAKYMGLN--KAGP-FKP-SYYSMDGFSVV-KLNEVIRTVDIVVTAT----GNKNVVTREHMDKMKNGCVVCNMGHSN  345 (542)
Q Consensus       275 ~~~a~~lg~~--e~~p-~~a-~ea~mdG~~v~-~~~~a~~~~d~~~t~t----g~~~vi~~~~~~~mk~gail~n~gh~~  345 (542)
                      +++++.+|+.  ..|| ... ..+.-.|.+.. +++++++++|+|++++    .++++|+.+.|+.||+|++++|+|++.
T Consensus       162 A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVil~~p~~~~t~~~i~~~~l~~mk~gailIn~arg~  241 (320)
T 1gdh_A          162 AKRAQGFDMDIDYFDTHRASSSDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTARGD  241 (320)
T ss_dssp             HHHHHTTTCEEEEECSSCCCHHHHHHHTCEECSSHHHHHHHCSEEEECCCCCTTTTTCBSHHHHTTSCTTEEEEECSCGG
T ss_pred             HHHHHHCCCEEEEECCCCcChhhhhhcCcEEcCCHHHHHhhCCEEEEeccCchHHHhhcCHHHHhhCCCCcEEEECCCCc
Confidence            9999999983  2344 222 23334577766 7899999999999953    478999999999999999999999975


Q ss_pred             ccccccccc
Q psy4626         346 TEIDVNSLR  354 (542)
Q Consensus       346 ~Ei~~~~l~  354 (542)
                      . +|..+|.
T Consensus       242 ~-vd~~aL~  249 (320)
T 1gdh_A          242 L-VDNELVV  249 (320)
T ss_dssp             G-BCHHHHH
T ss_pred             c-cCHHHHH
Confidence            4 3434333

>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A

Probab=98.27  E-value=2.1e-06  Score=88.13  Aligned_cols=93  Identities=11%  Similarity=0.093  Sum_probs=67.7

Q ss_pred             HhcCCcccc----ccccccHHHHhhcCCCC----CCCCCCCccccCCeeeeehhhhcccCcEEEEc----cCCCCccCHh
Q psy4626         260 SLHLPTFDA----HLTELSDEQAKYMGLNK----AGPFKPSYYSMDGFSVVKLNEVIRTVDIVVTA----TGNKNVVTRE  327 (542)
Q Consensus       260 ~l~L~~lg~----~i~~lt~~~a~~lg~~e----~~p~~a~ea~mdG~~v~~~~~a~~~~d~~~t~----tg~~~vi~~~  327 (542)
                      ++..+++|+    .|++..+++++++|+..    .+|.+. +..-..+...+++|+++++|||+++    ..++++|+.+
T Consensus       136 ~l~g~tvGIiG~G~IG~~vA~~l~~~G~~V~~~dr~~~~~-~~~~~~~~~~~l~ell~~aDiV~l~~Plt~~t~~li~~~  214 (315)
T 3pp8_A          136 TREEFSVGIMGAGVLGAKVAESLQAWGFPLRCWSRSRKSW-PGVESYVGREELRAFLNQTRVLINLLPNTAQTVGIINSE  214 (315)
T ss_dssp             CSTTCCEEEECCSHHHHHHHHHHHTTTCCEEEEESSCCCC-TTCEEEESHHHHHHHHHTCSEEEECCCCCGGGTTCBSHH
T ss_pred             CcCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCchhh-hhhhhhcccCCHHHHHhhCCEEEEecCCchhhhhhccHH
Confidence            345567776    89999999999999943    233221 1111111124789999999999994    4688999999


Q ss_pred             HHhcCCCCcEEEccCCCCccccccccc
Q psy4626         328 HMDKMKNGCVVCNMGHSNTEIDVNSLR  354 (542)
Q Consensus       328 ~~~~mk~gail~n~gh~~~Ei~~~~l~  354 (542)
                      .|+.||+|++++|+|++.. +|-++|.
T Consensus       215 ~l~~mk~gailIN~aRG~~-vd~~aL~  240 (315)
T 3pp8_A          215 LLDQLPDGAYVLNLARGVH-VQEADLL  240 (315)
T ss_dssp             HHTTSCTTEEEEECSCGGG-BCHHHHH
T ss_pred             HHhhCCCCCEEEECCCChh-hhHHHHH
Confidence            9999999999999999987 3544444

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}

Probab=98.27  E-value=3.1e-06  Score=86.55  Aligned_cols=111  Identities=15%  Similarity=0.152  Sum_probs=84.3

Q ss_pred             cccCcEEEEEcCChhHHHHHHHHHhCCC-EEEEEeCCchhhhhhhcCCce-eeC-----HHHH------hcCCcEEEEcC
Q psy4626          74 MFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMDGFS-VVK-----LNEV------IRTVDIVVTAT  140 (542)
Q Consensus        74 ~l~GktVvViG~G~IG~~vA~~l~~~Ga-~Viv~d~dp~r~~~A~~~G~~-v~~-----l~e~------l~~aDvVi~at  140 (542)
                      ..+|++|+|.|+|.+|...++.++.+|+ .|++++.++.|...++..|++ +++     ..+.      ..+.|++++++
T Consensus       158 ~~~g~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~~~~~k~~~a~~lGa~~~i~~~~~~~~~~~~~~~~~~g~d~v~d~~  237 (346)
T 4a2c_A          158 GCENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEKLALAKSFGAMQTFNSSEMSAPQMQSVLRELRFNQLILETA  237 (346)
T ss_dssp             CCTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHGGGCSSEEEEECS
T ss_pred             cCCCCEEEEECCCCcchHHHHHHHHcCCcEEEEEechHHHHHHHHHcCCeEEEeCCCCCHHHHHHhhcccCCcccccccc
Confidence            4689999999999999999999999999 567889999998888889975 332     2221      15789999999


Q ss_pred             CCcccCCHHHHhccCCCeEEEeccCCCc-----ccChHhhcCCCcceeee
Q psy4626         141 GNKNVVTREHMDKMKNGCVVCNMGHSNT-----EIDVNSLRTPDLTWEKV  185 (542)
Q Consensus       141 G~~~lI~~e~l~~mk~GailvnvG~g~~-----eid~~aL~~~~l~v~~~  185 (542)
                      |....++ ..++.+++++.++.+|....     ..++..+..+++++.++
T Consensus       238 G~~~~~~-~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~k~~~i~G~  286 (346)
T 4a2c_A          238 GVPQTVE-LAVEIAGPHAQLALVGTLHQDLHLTSATFGKILRKELTVIGS  286 (346)
T ss_dssp             CSHHHHH-HHHHHCCTTCEEEECCCCSSCEEECHHHHHHHHHHTCEEEEC
T ss_pred             cccchhh-hhhheecCCeEEEEEeccCCCccccccCHHHHhhceeEEEEE
Confidence            9877774 78999999999999987642     22333444445555443

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=98.26  E-value=1.4e-06  Score=88.89  Aligned_cols=104  Identities=16%  Similarity=0.181  Sum_probs=80.3

Q ss_pred             HHHHHHHHhhcCccccCcEEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCchhhhhh-hcCCce-eeC-----HHHHh--
Q psy4626          61 ESIIDSLKRSTDVMFGGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQA-CMDGFS-VVK-----LNEVI--  130 (542)
Q Consensus        61 ~s~~~ai~r~~~~~l~GktVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A-~~~G~~-v~~-----l~e~l--  130 (542)
                      ...|+++.+.. ...+|++|+|+|. |.||+.+++.++..|++|+++++++.+...+ ...|.+ +++     ..+.+  
T Consensus       135 ~tA~~al~~~~-~~~~g~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  213 (336)
T 4b7c_A          135 MTAYFALLDVG-QPKNGETVVISGAAGAVGSVAGQIARLKGCRVVGIAGGAEKCRFLVEELGFDGAIDYKNEDLAAGLKR  213 (336)
T ss_dssp             HHHHHHHHHTT-CCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCCSEEEETTTSCHHHHHHH
T ss_pred             HHHHHHHHHhc-CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCCEEEECCCHHHHHHHHH
Confidence            44566764332 3458999999999 9999999999999999999999999888777 677765 222     22222  


Q ss_pred             ---cCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCCC
Q psy4626         131 ---RTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSN  167 (542)
Q Consensus       131 ---~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g~  167 (542)
                         .+.|++|+++|.. .+ ...++.+++++.++.+|...
T Consensus       214 ~~~~~~d~vi~~~g~~-~~-~~~~~~l~~~G~iv~~G~~~  251 (336)
T 4b7c_A          214 ECPKGIDVFFDNVGGE-IL-DTVLTRIAFKARIVLCGAIS  251 (336)
T ss_dssp             HCTTCEEEEEESSCHH-HH-HHHHTTEEEEEEEEECCCGG
T ss_pred             hcCCCceEEEECCCcc-hH-HHHHHHHhhCCEEEEEeecc
Confidence               3699999999863 44 47899999999999998653

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans}

Probab=98.26  E-value=2.9e-06  Score=87.22  Aligned_cols=117  Identities=16%  Similarity=0.127  Sum_probs=84.8

Q ss_pred             HHHHHHHHhhcCccccCcEEEEEc-CChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeC----HHHHh-----
Q psy4626          61 ESIIDSLKRSTDVMFGGKQVVLCG-YGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVK----LNEVI-----  130 (542)
Q Consensus        61 ~s~~~ai~r~~~~~l~GktVvViG-~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~----l~e~l-----  130 (542)
                      ...|+++.+.. ...+|++|+|+| .|.||+.+++.++..|++|+++ .++.+...+...|++.++    ..+.+     
T Consensus       136 ~ta~~~l~~~~-~~~~g~~VlV~Ga~g~iG~~~~q~a~~~Ga~Vi~~-~~~~~~~~~~~lGa~~i~~~~~~~~~~~~~~~  213 (343)
T 3gaz_A          136 ITAWEGLVDRA-QVQDGQTVLIQGGGGGVGHVAIQIALARGARVFAT-ARGSDLEYVRDLGATPIDASREPEDYAAEHTA  213 (343)
T ss_dssp             HHHHHHHTTTT-CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEE-ECHHHHHHHHHHTSEEEETTSCHHHHHHHHHT
T ss_pred             HHHHHHHHHhc-CCCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEE-eCHHHHHHHHHcCCCEeccCCCHHHHHHHHhc
Confidence            34566663332 345899999999 7999999999999999999999 788888777777876543    22221     


Q ss_pred             -cCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCCCcccChHhhcCCCcce
Q psy4626         131 -RTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTW  182 (542)
Q Consensus       131 -~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g~~eid~~aL~~~~l~v  182 (542)
                       .++|++++++|.. .+ ...++.+++++.++.+|... .++...+..+++++
T Consensus       214 ~~g~D~vid~~g~~-~~-~~~~~~l~~~G~iv~~g~~~-~~~~~~~~~~~~~~  263 (343)
T 3gaz_A          214 GQGFDLVYDTLGGP-VL-DASFSAVKRFGHVVSCLGWG-THKLAPLSFKQATY  263 (343)
T ss_dssp             TSCEEEEEESSCTH-HH-HHHHHHEEEEEEEEESCCCS-CCCCHHHHHTTCEE
T ss_pred             CCCceEEEECCCcH-HH-HHHHHHHhcCCeEEEEcccC-ccccchhhhcCcEE
Confidence             3799999999863 44 46889999999999998654 33444443333433

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=98.25  E-value=2.2e-06  Score=87.71  Aligned_cols=90  Identities=19%  Similarity=0.276  Sum_probs=73.2

Q ss_pred             CcEEEEEcCChhHHHHHHHHHhCCC--EEEEEeCCchhhhhhhcCCc--e-eeCHHH-HhcCCcEEEEcCCCcc---cCC
Q psy4626          77 GKQVVLCGYGEVGKGCCQSLKGLGC--VIYITEIDPICALQACMDGF--S-VVKLNE-VIRTVDIVVTATGNKN---VVT  147 (542)
Q Consensus        77 GktVvViG~G~IG~~vA~~l~~~Ga--~Viv~d~dp~r~~~A~~~G~--~-v~~l~e-~l~~aDvVi~atG~~~---lI~  147 (542)
                      -++|+|||+|.||..+|+.++..|.  +|+++|+++.+...+...|.  . ..++++ +++++|+||.|+....   ++ 
T Consensus        33 ~~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~~G~~~~~~~~~~~~~~~~aDvVilavp~~~~~~vl-  111 (314)
T 3ggo_A           33 MQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSSPVRTFREIA-  111 (314)
T ss_dssp             CSEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCTTGGGGGCCSEEEECSCGGGHHHHH-
T ss_pred             CCEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHCCCcchhcCCHHHHhhccCCEEEEeCCHHHHHHHH-
Confidence            4799999999999999999999999  99999999988777777776  2 346777 8899999999975432   22 


Q ss_pred             HHHHhccCCCeEEEeccCCC
Q psy4626         148 REHMDKMKNGCVVCNMGHSN  167 (542)
Q Consensus       148 ~e~l~~mk~GailvnvG~g~  167 (542)
                      .+....+++++++++++...
T Consensus       112 ~~l~~~l~~~~iv~d~~Svk  131 (314)
T 3ggo_A          112 KKLSYILSEDATVTDQGSVK  131 (314)
T ss_dssp             HHHHHHSCTTCEEEECCSCC
T ss_pred             HHHhhccCCCcEEEECCCCc
Confidence            24455689999999988764

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=98.25  E-value=1.2e-06  Score=90.40  Aligned_cols=90  Identities=21%  Similarity=0.327  Sum_probs=71.3

Q ss_pred             ccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchh-hhhhhcCCceeeCHHHHhcCCcEEEEcCCCcc---cCCHHH
Q psy4626          75 FGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPIC-ALQACMDGFSVVKLNEVIRTVDIVVTATGNKN---VVTREH  150 (542)
Q Consensus        75 l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r-~~~A~~~G~~v~~l~e~l~~aDvVi~atG~~~---lI~~e~  150 (542)
                      +.+++|+|||+|.+|..+|+.++..|.+|+++++++.+ ...+...|+.+.+++++++.+|+||.|+....   ++..+.
T Consensus        14 l~~~~I~IIG~G~mG~alA~~L~~~G~~V~~~~~~~~~~~~~a~~~G~~~~~~~e~~~~aDvVilavp~~~~~~v~~~~i   93 (338)
T 1np3_A           14 IQGKKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSGSATVAKAEAHGLKVADVKTAVAAADVVMILTPDEFQGRLYKEEI   93 (338)
T ss_dssp             HHTSCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHTTCEEECHHHHHHTCSEEEECSCHHHHHHHHHHHT
T ss_pred             hcCCEEEEECchHHHHHHHHHHHHCcCEEEEEECChHHHHHHHHHCCCEEccHHHHHhcCCEEEEeCCcHHHHHHHHHHH
Confidence            56889999999999999999999999999999998765 44566678876688888999999999975432   221123


Q ss_pred             HhccCCCeEEEecc
Q psy4626         151 MDKMKNGCVVCNMG  164 (542)
Q Consensus       151 l~~mk~GailvnvG  164 (542)
                      ...+++|++++.++
T Consensus        94 ~~~l~~~~ivi~~~  107 (338)
T 1np3_A           94 EPNLKKGATLAFAH  107 (338)
T ss_dssp             GGGCCTTCEEEESC
T ss_pred             HhhCCCCCEEEEcC
Confidence            34688999999774

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=98.24  E-value=5e-06  Score=83.28  Aligned_cols=100  Identities=22%  Similarity=0.243  Sum_probs=75.6

Q ss_pred             HHHHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhh-hhcCCceee-CHHHHhcCCcEEEEc
Q psy4626          62 SIIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQ-ACMDGFSVV-KLNEVIRTVDIVVTA  139 (542)
Q Consensus        62 s~~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~-A~~~G~~v~-~l~e~l~~aDvVi~a  139 (542)
                      ++..++.+. +..+.|++++|+|+|.+|+.++..|...|++|+++++++.+... +...|..+. ++.+.++++|+||.|
T Consensus       115 G~~~~l~~~-~~~~~~~~v~iiGaG~~g~aia~~L~~~g~~V~v~~r~~~~~~~l~~~~g~~~~~~~~~~~~~aDiVi~a  193 (275)
T 2hk9_A          115 GFLKSLKSL-IPEVKEKSILVLGAGGASRAVIYALVKEGAKVFLWNRTKEKAIKLAQKFPLEVVNSPEEVIDKVQVIVNT  193 (275)
T ss_dssp             HHHHHHHHH-CTTGGGSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSHHHHHHHTTTSCEEECSCGGGTGGGCSEEEEC
T ss_pred             HHHHHHHHh-CCCcCCCEEEEECchHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHcCCeeehhHHhhhcCCCEEEEe
Confidence            344444443 34678999999999999999999999999999999999877553 333465554 667788899999999


Q ss_pred             CCCcc------cCCHHHHhccCCCeEEEeccC
Q psy4626         140 TGNKN------VVTREHMDKMKNGCVVCNMGH  165 (542)
Q Consensus       140 tG~~~------lI~~e~l~~mk~GailvnvG~  165 (542)
                      +....      .+.   ++.+++|.++++++.
T Consensus       194 tp~~~~~~~~~~i~---~~~l~~g~~viDv~~  222 (275)
T 2hk9_A          194 TSVGLKDEDPEIFN---YDLIKKDHVVVDIIY  222 (275)
T ss_dssp             SSTTSSTTCCCSSC---GGGCCTTSEEEESSS
T ss_pred             CCCCCCCCCCCCCC---HHHcCCCCEEEEcCC
Confidence            86432      222   456889999999886

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=98.24  E-value=2.4e-06  Score=86.79  Aligned_cols=92  Identities=16%  Similarity=0.136  Sum_probs=74.7

Q ss_pred             cCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCcee-eCHHHHhcCCcEEEEcCCCcccCC------H
Q psy4626          76 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV-VKLNEVIRTVDIVVTATGNKNVVT------R  148 (542)
Q Consensus        76 ~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v-~~l~e~l~~aDvVi~atG~~~lI~------~  148 (542)
                      .-++|+|||+|.+|..+|+.|...|.+|+++|+++.+.......|... .+++++++.+|+||.|+.++..+.      .
T Consensus        20 ~m~~I~iIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~~~~~~~~~aDvvi~~vp~~~~~~~v~~~~~   99 (310)
T 3doj_A           20 HMMEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLSKCDELVEHGASVCESPAEVIKKCKYTIAMLSDPCAALSVVFDKG   99 (310)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGGGGHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTT
T ss_pred             cCCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCCCeEcCCHHHHHHhCCEEEEEcCCHHHHHHHHhCch
Confidence            347899999999999999999999999999999998877666677764 468888999999999986543332      1


Q ss_pred             HHHhccCCCeEEEeccCCC
Q psy4626         149 EHMDKMKNGCVVCNMGHSN  167 (542)
Q Consensus       149 e~l~~mk~GailvnvG~g~  167 (542)
                      +.+..+++|.++++++...
T Consensus       100 ~l~~~l~~g~~vv~~st~~  118 (310)
T 3doj_A          100 GVLEQICEGKGYIDMSTVD  118 (310)
T ss_dssp             CGGGGCCTTCEEEECSCCC
T ss_pred             hhhhccCCCCEEEECCCCC
Confidence            2245688999999998764

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti}

Probab=98.24  E-value=2.8e-06  Score=87.36  Aligned_cols=118  Identities=16%  Similarity=0.048  Sum_probs=85.2

Q ss_pred             HHHHHHhhcCccccC-cEEEEE-cCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce-eeC-----HHHHh----
Q psy4626          63 IIDSLKRSTDVMFGG-KQVVLC-GYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVK-----LNEVI----  130 (542)
Q Consensus        63 ~~~ai~r~~~~~l~G-ktVvVi-G~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~-v~~-----l~e~l----  130 (542)
                      .|+++.++.   ..| ++|+|. |.|.||+.+++.++.+|++|++++.++.+...+...|++ +++     ..+.+    
T Consensus       153 a~~~~~~~~---~~g~~~vli~gg~g~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~v~~~~  229 (349)
T 3pi7_A          153 AIAMFDIVK---QEGEKAFVMTAGASQLCKLIIGLAKEEGFRPIVTVRRDEQIALLKDIGAAHVLNEKAPDFEATLREVM  229 (349)
T ss_dssp             HHHHHHHHH---HHCCSEEEESSTTSHHHHHHHHHHHHHTCEEEEEESCGGGHHHHHHHTCSEEEETTSTTHHHHHHHHH
T ss_pred             HHHHHHHHh---hCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCCEEEECCcHHHHHHHHHHh
Confidence            344444442   345 677776 899999999999999999999999999988878777875 332     22221    


Q ss_pred             --cCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCCC---cccCh-HhhcCCCcceeee
Q psy4626         131 --RTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSN---TEIDV-NSLRTPDLTWEKV  185 (542)
Q Consensus       131 --~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g~---~eid~-~aL~~~~l~v~~~  185 (542)
                        .+.|++++|+|....  .+.++.+++++.++.+|...   ..++. ..+..+++++.+.
T Consensus       230 ~~~g~D~vid~~g~~~~--~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~i~g~  288 (349)
T 3pi7_A          230 KAEQPRIFLDAVTGPLA--SAIFNAMPKRARWIIYGRLDPDATVIREPGQLIFQHKHIEGF  288 (349)
T ss_dssp             HHHCCCEEEESSCHHHH--HHHHHHSCTTCEEEECCCSCCSCCCCSCTHHHHHSCCEEEEC
T ss_pred             cCCCCcEEEECCCChhH--HHHHhhhcCCCEEEEEeccCCCCCCCCchhhhhccccEEEEE
Confidence              379999999997654  57899999999999998542   34454 4454455555543

>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A*

Probab=98.24  E-value=1.1e-06  Score=90.70  Aligned_cols=187  Identities=13%  Similarity=0.146  Sum_probs=115.4

Q ss_pred             HHhcCCcEEEEcCCCcccCCHHHHhccCC--CeEEEeccCCCcccChHhhcCCCcceeeeccceeeEecCCCCEEEEecC
Q psy4626         128 EVIRTVDIVVTATGNKNVVTREHMDKMKN--GCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIVLLAE  205 (542)
Q Consensus       128 e~l~~aDvVi~atG~~~lI~~e~l~~mk~--GailvnvG~g~~eid~~aL~~~~l~v~~~~~~v~~y~~~dg~~I~LLa~  205 (542)
                      +.++++|+++....+  -++++.++.+++  -..+...|.|-+.+|++++..+++.+.....                  
T Consensus        42 ~~~~~~d~~i~~~~~--~~~~~~l~~~~~~~Lk~I~~~~~G~d~id~~~~~~~gi~v~n~p~------------------  101 (333)
T 1j4a_A           42 ALAKGADGVVVYQQL--DYIAETLQALADNGITKMSLRNVGVDNIDMAKAKELGFQITNVPV------------------  101 (333)
T ss_dssp             GGGTTCSEEEECCSS--CBCHHHHHHHHHTTCCEEEESSSCCTTBCHHHHHHTTCEEECCCC------------------
T ss_pred             HHhcCCcEEEEcCCC--CCCHHHHHhccccCCeEEEECCcccccccHHHHHhCCCEEEeCCC------------------
Confidence            456889999875322  366788888865  6677788888888999888765544432210                  


Q ss_pred             CCcccccCCCChhHHHh------hHHHHHHHHHHHHhcCCCCCCCCccccCChhhHHHHHHhcCCcccc----ccccccH
Q psy4626         206 GRLVNLSCSSLPSFVVS------ITACTQALALIELFNAPSGRYKSDVYLLPKKMDEYVASLHLPTFDA----HLTELSD  275 (542)
Q Consensus       206 GrLvnl~~~thp~~vmd------~sfa~q~la~~~L~~~~~~~~~~gv~~lp~~~d~~VA~l~L~~lg~----~i~~lt~  275 (542)
                               .++..+-+      ++++.++-......+.  ++|... .....       ++..+++|+    .|++..+
T Consensus       102 ---------~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~--g~w~~~-~~~~~-------~l~g~~vgIiG~G~IG~~~A  162 (333)
T 1j4a_A          102 ---------YSPNAIAEHAAIQAARILRQDKAMDEKVAR--HDLRWA-PTIGR-------EVRDQVVGVVGTGHIGQVFM  162 (333)
T ss_dssp             ---------SCHHHHHHHHHHHHHHHHHTHHHHHHHHHT--TBCCCT-TCCBC-------CGGGSEEEEECCSHHHHHHH
T ss_pred             ---------CCchHHHHHHHHHHHHHHcCHHHHHHHHHc--CCCccC-Ccccc-------cCCCCEEEEEccCHHHHHHH
Confidence                     01111111      1222222222222222  345311 00111       234456665    8888889


Q ss_pred             HHHhhcCCC--CCCCCCCCccccCCeeee-ehhhhcccCcEEEEcc----CCCCccCHhHHhcCCCCcEEEccCCCCccc
Q psy4626         276 EQAKYMGLN--KAGPFKPSYYSMDGFSVV-KLNEVIRTVDIVVTAT----GNKNVVTREHMDKMKNGCVVCNMGHSNTEI  348 (542)
Q Consensus       276 ~~a~~lg~~--e~~p~~a~ea~mdG~~v~-~~~~a~~~~d~~~t~t----g~~~vi~~~~~~~mk~gail~n~gh~~~Ei  348 (542)
                      ++++.+|+.  ..||...-++ -++++.. +++++++++|+|++++    .++++|+.+.|+.||+|++++|+|++.. +
T Consensus       163 ~~l~~~G~~V~~~d~~~~~~~-~~~~~~~~~l~ell~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~arg~~-v  240 (333)
T 1j4a_A          163 QIMEGFGAKVITYDIFRNPEL-EKKGYYVDSLDDLYKQADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPL-V  240 (333)
T ss_dssp             HHHHHTTCEEEEECSSCCHHH-HHTTCBCSCHHHHHHHCSEEEECSCCCGGGTTCBSHHHHHHSCTTEEEEECSCGGG-B
T ss_pred             HHHHHCCCEEEEECCCcchhH-HhhCeecCCHHHHHhhCCEEEEcCCCcHHHHHHHhHHHHhhCCCCcEEEECCCCcc-c
Confidence            999999983  2233332111 1234444 7899999999999954    4789999999999999999999999876 5


Q ss_pred             ccccccC
Q psy4626         349 DVNSLRT  355 (542)
Q Consensus       349 ~~~~l~~  355 (542)
                      |-++|.+
T Consensus       241 d~~aL~~  247 (333)
T 1j4a_A          241 DTDAVIR  247 (333)
T ss_dssp             CHHHHHH
T ss_pred             CHHHHHH
Confidence            6555554

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=98.22  E-value=2.4e-06  Score=86.47  Aligned_cols=91  Identities=21%  Similarity=0.236  Sum_probs=73.3

Q ss_pred             CcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCcee--eCHHHHhcCCcEEEEcCCCcccCC------H
Q psy4626          77 GKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV--VKLNEVIRTVDIVVTATGNKNVVT------R  148 (542)
Q Consensus        77 GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v--~~l~e~l~~aDvVi~atG~~~lI~------~  148 (542)
                      .++|+|||+|.+|..+|..|...|.+|+++|+++.+.......|...  .+++++++.+|+||.|+.+...+.      .
T Consensus         7 ~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~e~~~~aDvvi~~vp~~~~~~~v~~~~~   86 (303)
T 3g0o_A            7 DFHVGIVGLGSMGMGAARSCLRAGLSTWGADLNPQACANLLAEGACGAAASAREFAGVVDALVILVVNAAQVRQVLFGED   86 (303)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCSEEESSSTTTTTTCSEEEECCSSHHHHHHHHC--C
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHcCCccccCCHHHHHhcCCEEEEECCCHHHHHHHHhChh
Confidence            46899999999999999999999999999999998877666667643  567888899999999987643332      1


Q ss_pred             HHHhccCCCeEEEeccCCC
Q psy4626         149 EHMDKMKNGCVVCNMGHSN  167 (542)
Q Consensus       149 e~l~~mk~GailvnvG~g~  167 (542)
                      +..+.+++|.++++++...
T Consensus        87 ~l~~~l~~g~ivv~~st~~  105 (303)
T 3g0o_A           87 GVAHLMKPGSAVMVSSTIS  105 (303)
T ss_dssp             CCGGGSCTTCEEEECSCCC
T ss_pred             hHHhhCCCCCEEEecCCCC
Confidence            2235678999999998764

>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A*

Probab=98.21  E-value=1.5e-06  Score=88.22  Aligned_cols=88  Identities=22%  Similarity=0.275  Sum_probs=72.5

Q ss_pred             CcEEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce-eeCHHHH-----h--cCCcEEEEcCCCcccCC
Q psy4626          77 GKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVKLNEV-----I--RTVDIVVTATGNKNVVT  147 (542)
Q Consensus        77 GktVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~-v~~l~e~-----l--~~aDvVi~atG~~~lI~  147 (542)
                      |+ |+|.|. |.+|+.+++.++.+|++|++++.++.+...+...|++ +++..+.     +  .+.|++++++|.. .+ 
T Consensus       148 g~-VlV~Ga~G~vG~~aiqla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~d~v~d~~g~~-~~-  224 (324)
T 3nx4_A          148 GE-VVVTGASGGVGSTAVALLHKLGYQVAAVSGRESTHGYLKSLGANRILSRDEFAESRPLEKQLWAGAIDTVGDK-VL-  224 (324)
T ss_dssp             CC-EEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHHHTCSEEEEGGGSSCCCSSCCCCEEEEEESSCHH-HH-
T ss_pred             Ce-EEEECCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCCEEEecCCHHHHHhhcCCCccEEEECCCcH-HH-
Confidence            56 999998 9999999999999999999999999988888888875 3333221     1  3689999999875 44 


Q ss_pred             HHHHhccCCCeEEEeccCCC
Q psy4626         148 REHMDKMKNGCVVCNMGHSN  167 (542)
Q Consensus       148 ~e~l~~mk~GailvnvG~g~  167 (542)
                      .+.++.+++++.++.+|...
T Consensus       225 ~~~~~~l~~~G~iv~~G~~~  244 (324)
T 3nx4_A          225 AKVLAQMNYGGCVAACGLAG  244 (324)
T ss_dssp             HHHHHTEEEEEEEEECCCTT
T ss_pred             HHHHHHHhcCCEEEEEecCC
Confidence            47899999999999999753

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}

Probab=98.21  E-value=5.2e-06  Score=84.68  Aligned_cols=115  Identities=19%  Similarity=0.242  Sum_probs=83.3

Q ss_pred             HHHHHHHHhhcCccccCcEEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce-eeC-----HHH----H
Q psy4626          61 ESIIDSLKRSTDVMFGGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVK-----LNE----V  129 (542)
Q Consensus        61 ~s~~~ai~r~~~~~l~GktVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~-v~~-----l~e----~  129 (542)
                      ...|+++.+.. ....|++|+|+|. |.||+.+++.++..|++|+++++++.+...+...|.+ +.+     ..+    .
T Consensus       131 ~ta~~~l~~~~-~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~i~~~  209 (333)
T 1wly_A          131 MTAQYLLHQTH-KVKPGDYVLIHAAAGGMGHIMVPWARHLGATVIGTVSTEEKAETARKLGCHHTINYSTQDFAEVVREI  209 (333)
T ss_dssp             HHHHHHHHTTS-CCCTTCEEEETTTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHH
T ss_pred             HHHHHHHHHhh-CCCCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCCEEEECCCHHHHHHHHHH
Confidence            34567765432 2457999999995 9999999999999999999999998777666656654 222     111    1


Q ss_pred             h--cCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCCC---cccChH-hhcCC
Q psy4626         130 I--RTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSN---TEIDVN-SLRTP  178 (542)
Q Consensus       130 l--~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g~---~eid~~-aL~~~  178 (542)
                      .  .+.|++|+++|. ..+ .+.++.+++++.++.+|...   .+++.. .+..+
T Consensus       210 ~~~~~~d~vi~~~g~-~~~-~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~  262 (333)
T 1wly_A          210 TGGKGVDVVYDSIGK-DTL-QKSLDCLRPRGMCAAYGHASGVADPIRVVEDLGVR  262 (333)
T ss_dssp             HTTCCEEEEEECSCT-TTH-HHHHHTEEEEEEEEECCCTTCCCCCCCHHHHTTTT
T ss_pred             hCCCCCeEEEECCcH-HHH-HHHHHhhccCCEEEEEecCCCCcCCCChhHhhhhc
Confidence            2  368999999987 444 47899999999999998653   234544 44333

>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A*

Probab=98.21  E-value=3.3e-06  Score=87.85  Aligned_cols=190  Identities=18%  Similarity=0.233  Sum_probs=116.2

Q ss_pred             hcCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCCCcccChHhhcCCCcceeeeccceeeEecCCCCEEEEecCCCcc
Q psy4626         130 IRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIVLLAEGRLV  209 (542)
Q Consensus       130 l~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g~~eid~~aL~~~~l~v~~~~~~v~~y~~~dg~~I~LLa~GrLv  209 (542)
                      +.++|+++.....  .++++.++.+++-..|...|.|-+.+|++++.++++.+..+..                      
T Consensus        61 ~~~~~~~~~~~~~--~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~V~n~~~----------------------  116 (347)
T 1mx3_A           61 LNEAVGALMYHTI--TLTREDLEKFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPA----------------------  116 (347)
T ss_dssp             HHHEEEEEECSSS--CBCHHHHTTCSSCCEEEESSSCCTTBCHHHHHHTTCEEECCCS----------------------
T ss_pred             hcCCeEEEEeCCC--CCCHHHHhhCCCCCEEEEcccccCcccHHHHHhCCceEEECCC----------------------
Confidence            3567776654322  3678889999888899999999888999888765544433210                      


Q ss_pred             cccCCCChhHHHhhHHH------HHHHHHHHHhcCCCCCCCCccccCChhhHHH---HHHhcCCcccc----ccccccHH
Q psy4626         210 NLSCSSLPSFVVSITAC------TQALALIELFNAPSGRYKSDVYLLPKKMDEY---VASLHLPTFDA----HLTELSDE  276 (542)
Q Consensus       210 nl~~~thp~~vmd~sfa------~q~la~~~L~~~~~~~~~~gv~~lp~~~d~~---VA~l~L~~lg~----~i~~lt~~  276 (542)
                          . ++..+-+..++      .++-......+.  ++|.....    .....   .-++..+++|+    .|++..++
T Consensus       117 ----~-~~~~vAE~~~~l~L~~~R~~~~~~~~~~~--g~w~~~~~----~~~~~~~~~~~l~g~tvGIIG~G~IG~~vA~  185 (347)
T 1mx3_A          117 ----A-SVEETADSTLCHILNLYRRATWLHQALRE--GTRVQSVE----QIREVASGAARIRGETLGIIGLGRVGQAVAL  185 (347)
T ss_dssp             ----T-THHHHHHHHHHHHHHHHHCHHHHHHHHHT--TCCCCSHH----HHHHHTTTCCCCTTCEEEEECCSHHHHHHHH
T ss_pred             ----C-CHHHHHHHHHHHHHHHHHhHHHHHHHHHc--CCcccccc----cccccccCccCCCCCEEEEEeECHHHHHHHH
Confidence                0 11111121111      111111112222  45643210    00000   01344566666    88888999


Q ss_pred             HHhhcCCC--CCCCCCC-CccccCCeeee-ehhhhcccCcEEEEc----cCCCCccCHhHHhcCCCCcEEEccCCCCccc
Q psy4626         277 QAKYMGLN--KAGPFKP-SYYSMDGFSVV-KLNEVIRTVDIVVTA----TGNKNVVTREHMDKMKNGCVVCNMGHSNTEI  348 (542)
Q Consensus       277 ~a~~lg~~--e~~p~~a-~ea~mdG~~v~-~~~~a~~~~d~~~t~----tg~~~vi~~~~~~~mk~gail~n~gh~~~Ei  348 (542)
                      +++.+|+.  ..||... ..+...|.+.. +++|+++++|||+++    ..++++|+.+.|+.||+|++++|++++... 
T Consensus       186 ~l~~~G~~V~~~d~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~arg~~v-  264 (347)
T 1mx3_A          186 RAKAFGFNVLFYDPYLSDGVERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLV-  264 (347)
T ss_dssp             HHHTTTCEEEEECTTSCTTHHHHHTCEECSSHHHHHHHCSEEEECCCCCTTCTTSBSHHHHTTSCTTEEEEECSCTTSB-
T ss_pred             HHHHCCCEEEEECCCcchhhHhhcCCeecCCHHHHHhcCCEEEEcCCCCHHHHHHhHHHHHhcCCCCCEEEECCCChHH-
Confidence            99999983  2233322 11223466543 789999999999994    357899999999999999999999999874 


Q ss_pred             ccccccC
Q psy4626         349 DVNSLRT  355 (542)
Q Consensus       349 ~~~~l~~  355 (542)
                      |.++|.+
T Consensus       265 d~~aL~~  271 (347)
T 1mx3_A          265 DEKALAQ  271 (347)
T ss_dssp             CHHHHHH
T ss_pred             hHHHHHH
Confidence            4444443

>1gtm_A Glutamate dehydrogenase; oxidoreductase, NAD, NADP; 2.20A {Pyrococcus furiosus} SCOP: c.2.1.7 c.58.1.1 PDB: 1bvu_A 1euz_A

Probab=98.21  E-value=9.8e-07  Score=94.02  Aligned_cols=98  Identities=16%  Similarity=0.242  Sum_probs=67.1

Q ss_pred             cCcc-ccCcEEEEEcCChhHHHHHHHHHh-CCCEEEEE-eCCchhhhhhhcCCceeeCHHHHhcCC---cEEEEcCCCcc
Q psy4626          71 TDVM-FGGKQVVLCGYGEVGKGCCQSLKG-LGCVIYIT-EIDPICALQACMDGFSVVKLNEVIRTV---DIVVTATGNKN  144 (542)
Q Consensus        71 ~~~~-l~GktVvViG~G~IG~~vA~~l~~-~Ga~Viv~-d~dp~r~~~A~~~G~~v~~l~e~l~~a---DvVi~atG~~~  144 (542)
                      .+.. +.|+||+|+|+|.||+.+|+.|++ +|++|+.+ |.+..  .    ....-++++++++.+   +.+.....+.+
T Consensus       205 ~G~~~l~gktvgI~G~G~VG~~vA~~l~~~~G~kVv~~sD~~g~--~----~~~~gvdl~~L~~~~d~~~~l~~l~~t~~  278 (419)
T 1gtm_A          205 LGWDTLKGKTIAIQGYGNAGYYLAKIMSEDFGMKVVAVSDSKGG--I----YNPDGLNADEVLKWKNEHGSVKDFPGATN  278 (419)
T ss_dssp             TTCSCSTTCEEEEECCSHHHHHHHHHHHHTTCCEEEEEECSSCE--E----EEEEEECHHHHHHHHHHHSSSTTCTTSEE
T ss_pred             hCCcccCCCEEEEEcCCHHHHHHHHHHHHhcCCEEEEEeCCCcc--c----cCccCCCHHHHHHHHHhcCEeecCccCee
Confidence            4567 899999999999999999999999 99999988 43321  0    011223555554322   22212234666


Q ss_pred             cCCHHHHhccCCCeEEEeccCCC--cccChHhhc
Q psy4626         145 VVTREHMDKMKNGCVVCNMGHSN--TEIDVNSLR  176 (542)
Q Consensus       145 lI~~e~l~~mk~GailvnvG~g~--~eid~~aL~  176 (542)
                       ++.+.|..||+ .+++|+++++  ++-+..+|.
T Consensus       279 -i~~~~l~~mk~-dilIn~ArG~~Vde~a~~aL~  310 (419)
T 1gtm_A          279 -ITNEELLELEV-DVLAPAAIEEVITKKNADNIK  310 (419)
T ss_dssp             -ECHHHHHHSCC-SEEEECSCSCCBCTTGGGGCC
T ss_pred             -eCHHHHHhCCC-CEEEECCCcccCCHHHHHHhc
Confidence             77888999988 5999999986  233355554

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*

Probab=98.21  E-value=4e-06  Score=86.57  Aligned_cols=121  Identities=12%  Similarity=0.066  Sum_probs=86.8

Q ss_pred             HHHHHHHHhhcCccccCcEEEEEc-CChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce-eeCH-----HHH----
Q psy4626          61 ESIIDSLKRSTDVMFGGKQVVLCG-YGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVKL-----NEV----  129 (542)
Q Consensus        61 ~s~~~ai~r~~~~~l~GktVvViG-~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~-v~~l-----~e~----  129 (542)
                      ...|+++.+..+ ...|++|+|+| .|.||+.+++.++..|++|+++++++.+...+...|.+ +++.     .+.    
T Consensus       148 ~tA~~al~~~~~-~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  226 (354)
T 2j8z_A          148 LTAFQLLHLVGN-VQAGDYVLIHAGLSGVGTAAIQLTRMAGAIPLVTAGSQKKLQMAEKLGAAAGFNYKKEDFSEATLKF  226 (354)
T ss_dssp             HHHHHHHTTTSC-CCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHH
T ss_pred             HHHHHHHHHhcC-CCCCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCcEEEecCChHHHHHHHHH
Confidence            345666643322 45799999999 69999999999999999999999999887766666654 2221     111    


Q ss_pred             h--cCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCCC---cccCh-HhhcCCCcceee
Q psy4626         130 I--RTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSN---TEIDV-NSLRTPDLTWEK  184 (542)
Q Consensus       130 l--~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g~---~eid~-~aL~~~~l~v~~  184 (542)
                      .  .+.|++|+++|.. .+ .+.++.|++++.++.+|...   .++++ ..+..+++++.+
T Consensus       227 ~~~~~~d~vi~~~G~~-~~-~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~i~g  285 (354)
T 2j8z_A          227 TKGAGVNLILDCIGGS-YW-EKNVNCLALDGRWVLYGLMGGGDINGPLFSKLLFKRGSLIT  285 (354)
T ss_dssp             TTTSCEEEEEESSCGG-GH-HHHHHHEEEEEEEEECCCTTCSCCCSCHHHHHHHTTCEEEE
T ss_pred             hcCCCceEEEECCCch-HH-HHHHHhccCCCEEEEEeccCCCccCCChhHHHHhCCCEEEE
Confidence            2  3689999999975 44 46799999999999998653   34555 545444444443

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=98.21  E-value=3e-06  Score=84.99  Aligned_cols=89  Identities=12%  Similarity=0.103  Sum_probs=66.4

Q ss_pred             cEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcC-----------C--------------c-eeeCHHHHhc
Q psy4626          78 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMD-----------G--------------F-SVVKLNEVIR  131 (542)
Q Consensus        78 ktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~-----------G--------------~-~v~~l~e~l~  131 (542)
                      ++|+|+|+|.+|..+|+.+...|.+|+++|+++.+...+...           |              . ...+++++++
T Consensus         5 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~   84 (283)
T 4e12_A            5 TNVTVLGTGVLGSQIAFQTAFHGFAVTAYDINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRYSDDLAQAVK   84 (283)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEEESCHHHHTT
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEEeCCHHHHhc
Confidence            689999999999999999999999999999999776544322           1              1 2346677889


Q ss_pred             CCcEEEEcCCCc----ccCCHHHHhccCCCeEEEeccCC
Q psy4626         132 TVDIVVTATGNK----NVVTREHMDKMKNGCVVCNMGHS  166 (542)
Q Consensus       132 ~aDvVi~atG~~----~lI~~e~l~~mk~GailvnvG~g  166 (542)
                      ++|+||+|....    ..+-.+..+.+++++++++.+++
T Consensus        85 ~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~il~s~tS~  123 (283)
T 4e12_A           85 DADLVIEAVPESLDLKRDIYTKLGELAPAKTIFATNSST  123 (283)
T ss_dssp             TCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSS
T ss_pred             cCCEEEEeccCcHHHHHHHHHHHHhhCCCCcEEEECCCC
Confidence            999999997642    11213445568999999954433

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=98.20  E-value=2.9e-06  Score=84.44  Aligned_cols=89  Identities=20%  Similarity=0.320  Sum_probs=70.6

Q ss_pred             cEEEEEcCChhHHHHHHHHHhCCC--EEEEEeCCchhhhhhhcCCce---eeCHHHHhc-CCcEEEEcCCCcc---cCCH
Q psy4626          78 KQVVLCGYGEVGKGCCQSLKGLGC--VIYITEIDPICALQACMDGFS---VVKLNEVIR-TVDIVVTATGNKN---VVTR  148 (542)
Q Consensus        78 ktVvViG~G~IG~~vA~~l~~~Ga--~Viv~d~dp~r~~~A~~~G~~---v~~l~e~l~-~aDvVi~atG~~~---lI~~  148 (542)
                      ++|+|+|+|.+|..++..++..|.  +|+++|+++.+...+...|..   ..+++++++ ++|+||.|+....   ++ .
T Consensus         2 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~aDvVilavp~~~~~~v~-~   80 (281)
T 2g5c_A            2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSSPVRTFREIA-K   80 (281)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCGGGGGGTCCSEEEECSCHHHHHHHH-H
T ss_pred             cEEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHCCCcccccCCHHHHhcCCCCEEEEcCCHHHHHHHH-H
Confidence            479999999999999999999998  999999999877666666763   335778888 9999999986432   22 2


Q ss_pred             HHHhccCCCeEEEeccCCC
Q psy4626         149 EHMDKMKNGCVVCNMGHSN  167 (542)
Q Consensus       149 e~l~~mk~GailvnvG~g~  167 (542)
                      +....+++++++++++...
T Consensus        81 ~l~~~l~~~~iv~~~~~~~   99 (281)
T 2g5c_A           81 KLSYILSEDATVTDQGSVK   99 (281)
T ss_dssp             HHHHHSCTTCEEEECCSCC
T ss_pred             HHHhhCCCCcEEEECCCCc
Confidence            3445688999999988664

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=98.20  E-value=9.7e-06  Score=85.34  Aligned_cols=122  Identities=17%  Similarity=0.191  Sum_probs=91.3

Q ss_pred             HhHHHHHHHHHHHHH---hhcCccccCcEEEEEcCChhHHHHHHHHHhCCC-EEEEEeCCch----h---h-----hhhh
Q psy4626          54 DNLYMCRESIIDSLK---RSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPI----C---A-----LQAC  117 (542)
Q Consensus        54 d~~~g~~~s~~~ai~---r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga-~Viv~d~dp~----r---~-----~~A~  117 (542)
                      |...|++--+.-++.   +.++..+...+|+|+|.|..|.++|+.+.++|+ +|+++|++..    |   +     ..+.
T Consensus       162 DDiqGTa~V~lAall~al~l~g~~l~d~kVVi~GAGaAG~~iA~ll~~~Ga~~I~v~D~~Gli~~~R~~~L~~~k~~fa~  241 (398)
T 2a9f_A          162 DDQHGTAIVVLAAIFNSLKLLKKSLDEVSIVVNGGGSAGLSITRKLLAAGATKVTVVDKFGIINEQEAAQLAPHHLDIAK  241 (398)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTTCCTTSCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCTTCCCSCCC---CHHH
T ss_pred             chhhhHHHHHHHHHHHHHHHhCCCCCccEEEEECCCHHHHHHHHHHHHcCCCeEEEEECCCcccCCccccchHHHHHHhh
Confidence            445566544443332   345667888999999999999999999999999 9999998741    1   1     1111


Q ss_pred             cCC--ceeeCHHHHhcCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCCCcccChHhhc
Q psy4626         118 MDG--FSVVKLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLR  176 (542)
Q Consensus       118 ~~G--~~v~~l~e~l~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g~~eid~~aL~  176 (542)
                      ...  ....++.++++++|++|-+++ +++++++.++.|+++.+|...+....|+..+...
T Consensus       242 ~~~~~~~~~~L~eav~~ADV~IG~Sa-pgl~T~EmVk~Ma~~pIIfalsNPt~E~~pe~a~  301 (398)
T 2a9f_A          242 VTNREFKSGTLEDALEGADIFIGVSA-PGVLKAEWISKMAARPVIFAMANPIPEIYPDEAL  301 (398)
T ss_dssp             HHSCTTCCCSCSHHHHTTCSEEECCS-TTCCCHHHHHTSCSSCEEEECCSSSCSSCHHHHH
T ss_pred             ccCcccchhhHHHHhccCCEEEecCC-CCCCCHHHHHhhCCCCEEEECCCCCccCCHHHHH
Confidence            100  012357889999999999986 8999999999999999999999877777776554

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}

Probab=98.20  E-value=7.7e-06  Score=84.99  Aligned_cols=104  Identities=15%  Similarity=0.205  Sum_probs=78.2

Q ss_pred             HHHHHHHHhhcCc---cccCcEEEEEc-CChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce-eeC-----HHHHh
Q psy4626          61 ESIIDSLKRSTDV---MFGGKQVVLCG-YGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVK-----LNEVI  130 (542)
Q Consensus        61 ~s~~~ai~r~~~~---~l~GktVvViG-~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~-v~~-----l~e~l  130 (542)
                      ...|+++.+..+.   ..+|++|+|+| .|.||+.+++.++.+|++|++++ ++.+...+...|++ +++     ..+.+
T Consensus       165 ~tA~~al~~~~~~~~~~~~g~~VlV~Ga~G~vG~~~~qla~~~Ga~Vi~~~-~~~~~~~~~~lGa~~v~~~~~~~~~~~~  243 (375)
T 2vn8_A          165 LTAWSAINKVGGLNDKNCTGKRVLILGASGGVGTFAIQVMKAWDAHVTAVC-SQDASELVRKLGADDVIDYKSGSVEEQL  243 (375)
T ss_dssp             HHHHHHHTTTTCCCTTTCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEE-CGGGHHHHHHTTCSEEEETTSSCHHHHH
T ss_pred             HHHHHHHHHhcccccccCCCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEe-ChHHHHHHHHcCCCEEEECCchHHHHHH
Confidence            4456676433221   45799999999 79999999999999999999988 67777777777875 332     22222


Q ss_pred             ---cCCcEEEEcCCCc-ccCCHHHHhccCCCeEEEeccCC
Q psy4626         131 ---RTVDIVVTATGNK-NVVTREHMDKMKNGCVVCNMGHS  166 (542)
Q Consensus       131 ---~~aDvVi~atG~~-~lI~~e~l~~mk~GailvnvG~g  166 (542)
                         .++|++|+|+|.. ..+. +.++.+++++.++.+|..
T Consensus       244 ~~~~g~D~vid~~g~~~~~~~-~~~~~l~~~G~iv~~g~~  282 (375)
T 2vn8_A          244 KSLKPFDFILDNVGGSTETWA-PDFLKKWSGATYVTLVTP  282 (375)
T ss_dssp             HTSCCBSEEEESSCTTHHHHG-GGGBCSSSCCEEEESCCS
T ss_pred             hhcCCCCEEEECCCChhhhhH-HHHHhhcCCcEEEEeCCC
Confidence               4799999999876 3333 678899999999999865

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=98.19  E-value=1.8e-06  Score=86.41  Aligned_cols=90  Identities=14%  Similarity=0.157  Sum_probs=72.6

Q ss_pred             cEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCcee-eCHHHHhcCCcEEEEcCCCcccCC------HHH
Q psy4626          78 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV-VKLNEVIRTVDIVVTATGNKNVVT------REH  150 (542)
Q Consensus        78 ktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v-~~l~e~l~~aDvVi~atG~~~lI~------~e~  150 (542)
                      ++|+|+|+|.+|..+|+.|...|.+|+++|+++.+.......|... .+++++++++|+||.|+.+...+.      .+.
T Consensus         2 ~~I~iiG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~advvi~~v~~~~~~~~v~~~~~~l   81 (287)
T 3pdu_A            2 TTYGFLGLGIMGGPMAANLVRAGFDVTVWNRNPAKCAPLVALGARQASSPAEVCAACDITIAMLADPAAAREVCFGANGV   81 (287)
T ss_dssp             CCEEEECCSTTHHHHHHHHHHHTCCEEEECSSGGGGHHHHHHTCEECSCHHHHHHHCSEEEECCSSHHHHHHHHHSTTCG
T ss_pred             CeEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHHcCCEEEEEcCCHHHHHHHHcCchhh
Confidence            3799999999999999999999999999999998877665667664 478888999999999987643332      123


Q ss_pred             HhccCCCeEEEeccCCC
Q psy4626         151 MDKMKNGCVVCNMGHSN  167 (542)
Q Consensus       151 l~~mk~GailvnvG~g~  167 (542)
                      ++.+++|.++++++...
T Consensus        82 ~~~l~~g~~vv~~st~~   98 (287)
T 3pdu_A           82 LEGIGGGRGYIDMSTVD   98 (287)
T ss_dssp             GGTCCTTCEEEECSCCC
T ss_pred             hhcccCCCEEEECCCCC
Confidence            45678999999998764

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1

Probab=98.19  E-value=5.1e-06  Score=85.78  Aligned_cols=117  Identities=20%  Similarity=0.250  Sum_probs=84.6

Q ss_pred             HHHHHHHHhhcCccccCcEEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce-eeCH-----HHH----
Q psy4626          61 ESIIDSLKRSTDVMFGGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVKL-----NEV----  129 (542)
Q Consensus        61 ~s~~~ai~r~~~~~l~GktVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~-v~~l-----~e~----  129 (542)
                      ...|+++.+..+ ...|++|+|+|. |.||+.+++.++..|++|+++++++.+...+...|.+ +.+.     .+.    
T Consensus       156 ~ta~~al~~~~~-~~~g~~vlV~GasggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~~~~d~~~~~~~~~~~~~  234 (351)
T 1yb5_A          156 FTAYRALIHSAC-VKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQNGAHEVFNHREVNYIDKIKKY  234 (351)
T ss_dssp             HHHHHHHHTTSC-CCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTSTTHHHHHHHH
T ss_pred             HHHHHHHHHhhC-CCCcCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHcCCCEEEeCCCchHHHHHHHH
Confidence            345667654322 457999999998 9999999999999999999999999887777777764 2221     111    


Q ss_pred             h--cCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCCC-cccChHhhcCCCc
Q psy4626         130 I--RTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSN-TEIDVNSLRTPDL  180 (542)
Q Consensus       130 l--~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g~-~eid~~aL~~~~l  180 (542)
                      .  .+.|++|+++|.. .+ .+.++.+++++.++.+|... .+++...+..+++
T Consensus       235 ~~~~~~D~vi~~~G~~-~~-~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~  286 (351)
T 1yb5_A          235 VGEKGIDIIIEMLANV-NL-SKDLSLLSHGGRVIVVGSRGTIEINPRDTMAKES  286 (351)
T ss_dssp             HCTTCEEEEEESCHHH-HH-HHHHHHEEEEEEEEECCCCSCEEECTHHHHTTTC
T ss_pred             cCCCCcEEEEECCChH-HH-HHHHHhccCCCEEEEEecCCCCccCHHHHHhCCc
Confidence            2  2689999999865 34 36789999999999998642 3444444443333

>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}

Probab=98.19  E-value=6.3e-06  Score=84.38  Aligned_cols=184  Identities=16%  Similarity=0.225  Sum_probs=114.2

Q ss_pred             HHhcCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCCCcccChHhhcCCCcceeeeccceeeEecCCCCEEEEecCCC
Q psy4626         128 EVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIVLLAEGR  207 (542)
Q Consensus       128 e~l~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g~~eid~~aL~~~~l~v~~~~~~v~~y~~~dg~~I~LLa~Gr  207 (542)
                      +.++++|+++....+  -++++.++.+++-..+...|.|-+.+|++++.++++.+.....                    
T Consensus        39 ~~~~~~d~~i~~~~~--~~~~~~l~~~~~Lk~i~~~~~G~d~id~~~~~~~gi~v~n~~~--------------------   96 (311)
T 2cuk_A           39 KRVEGAVGLIPTVED--RIDAEVMDRAKGLKVIACYSVGVDHVDLEAARERGIRVTHTPG--------------------   96 (311)
T ss_dssp             HHHTTCSEEECCTTS--CBCHHHHHHSTTCCEEECSSSCCTTBCHHHHHTTTCEEECCCS--------------------
T ss_pred             HHhcCCeEEEEcCCC--CCCHHHHhhCCCCeEEEECCcCccccCHHHHHhCCcEEEECCC--------------------
Confidence            456889999854322  3677889999888889999999888999988765554432210                    


Q ss_pred             cccccCCCChhHHHhh------HHHHHHHHHHHHhcCCCCCCCCcc--ccCChhhHHHHHHhcCCcccc----ccccccH
Q psy4626         208 LVNLSCSSLPSFVVSI------TACTQALALIELFNAPSGRYKSDV--YLLPKKMDEYVASLHLPTFDA----HLTELSD  275 (542)
Q Consensus       208 Lvnl~~~thp~~vmd~------sfa~q~la~~~L~~~~~~~~~~gv--~~lp~~~d~~VA~l~L~~lg~----~i~~lt~  275 (542)
                            . +...+-+.      +++.++-......+.  ++|...-  ...+.       ++..+++|+    .|++..+
T Consensus        97 ------~-~~~~vAE~~~~~~L~~~R~~~~~~~~~~~--g~w~~~~~~~~~~~-------~l~g~~vgIIG~G~IG~~~A  160 (311)
T 2cuk_A           97 ------V-LTEATADLTLALLLAVARRVVEGAAYARD--GLWKAWHPELLLGL-------DLQGLTLGLVGMGRIGQAVA  160 (311)
T ss_dssp             ------T-THHHHHHHHHHHHHHHHTTHHHHHHHHHT--TCCCCCCTTTTCBC-------CCTTCEEEEECCSHHHHHHH
T ss_pred             ------C-ChHHHHHHHHHHHHHHHcChHHHHHHHHc--CCCCccccccccCc-------CCCCCEEEEEEECHHHHHHH
Confidence                  0 11111111      111111111122222  4664210  00011       234455665    8888889


Q ss_pred             HHHhhcCCC--CCCCCCCCccccCCeeeeehhhhcccCcEEEEc---c-CCCCccCHhHHhcCCCCcEEEccCCCCcccc
Q psy4626         276 EQAKYMGLN--KAGPFKPSYYSMDGFSVVKLNEVIRTVDIVVTA---T-GNKNVVTREHMDKMKNGCVVCNMGHSNTEID  349 (542)
Q Consensus       276 ~~a~~lg~~--e~~p~~a~ea~mdG~~v~~~~~a~~~~d~~~t~---t-g~~~vi~~~~~~~mk~gail~n~gh~~~Ei~  349 (542)
                      ++++.+|+.  -.||...-..    ....+++++++++|+|+++   | .++++|+.+.|+.||+|++++|+|++.. +|
T Consensus       161 ~~l~~~G~~V~~~d~~~~~~~----~~~~~l~ell~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lin~srg~~-vd  235 (311)
T 2cuk_A          161 KRALAFGMRVVYHARTPKPLP----YPFLSLEELLKEADVVSLHTPLTPETHRLLNRERLFAMKRGAILLNTARGAL-VD  235 (311)
T ss_dssp             HHHHHTTCEEEEECSSCCSSS----SCBCCHHHHHHHCSEEEECCCCCTTTTTCBCHHHHTTSCTTCEEEECSCGGG-BC
T ss_pred             HHHHHCCCEEEEECCCCcccc----cccCCHHHHHhhCCEEEEeCCCChHHHhhcCHHHHhhCCCCcEEEECCCCCc-cC
Confidence            999999983  2233322111    2344789999999999995   3 6789999999999999999999999765 34


Q ss_pred             ccccc
Q psy4626         350 VNSLR  354 (542)
Q Consensus       350 ~~~l~  354 (542)
                      -++|.
T Consensus       236 ~~aL~  240 (311)
T 2cuk_A          236 TEALV  240 (311)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            34443

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*

Probab=98.18  E-value=6.5e-06  Score=81.62  Aligned_cols=100  Identities=19%  Similarity=0.301  Sum_probs=74.3

Q ss_pred             HHHHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhh-hhcCCceeeCHHHHhcCCcEEEEcC
Q psy4626          62 SIIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQ-ACMDGFSVVKLNEVIRTVDIVVTAT  140 (542)
Q Consensus        62 s~~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~-A~~~G~~v~~l~e~l~~aDvVi~at  140 (542)
                      +++.++.+. +..+.| +++|+|+|.+|+.+++.|...|++|+++++++.+... +...|....+++++ +++|+||.|+
T Consensus       103 g~~~~l~~~-~~~l~~-~v~iiG~G~~g~~~a~~l~~~g~~v~v~~r~~~~~~~l~~~~~~~~~~~~~~-~~~Divi~~t  179 (263)
T 2d5c_A          103 GFLEALKAG-GIPLKG-PALVLGAGGAGRAVAFALREAGLEVWVWNRTPQRALALAEEFGLRAVPLEKA-REARLLVNAT  179 (263)
T ss_dssp             HHHHHHHHT-TCCCCS-CEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHTCEECCGGGG-GGCSEEEECS
T ss_pred             HHHHHHHHh-CCCCCC-eEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhccchhhHhhc-cCCCEEEEcc
Confidence            334444443 346789 9999999999999999999999999999999876543 22334444466777 8999999998


Q ss_pred             CCc------ccCCHHHHhccCCCeEEEeccCCC
Q psy4626         141 GNK------NVVTREHMDKMKNGCVVCNMGHSN  167 (542)
Q Consensus       141 G~~------~lI~~e~l~~mk~GailvnvG~g~  167 (542)
                      +..      ..+.   .+.+++|.++++++...
T Consensus       180 p~~~~~~~~~~l~---~~~l~~g~~viD~~~~p  209 (263)
T 2d5c_A          180 RVGLEDPSASPLP---AELFPEEGAAVDLVYRP  209 (263)
T ss_dssp             STTTTCTTCCSSC---GGGSCSSSEEEESCCSS
T ss_pred             CCCCCCCCCCCCC---HHHcCCCCEEEEeecCC
Confidence            643      2232   46689999999988654

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=98.17  E-value=1.7e-06  Score=87.93  Aligned_cols=94  Identities=12%  Similarity=0.047  Sum_probs=74.6

Q ss_pred             cccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCcee-eCHHHHhcCCcEEEEcCCCcccC----CH
Q psy4626          74 MFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV-VKLNEVIRTVDIVVTATGNKNVV----TR  148 (542)
Q Consensus        74 ~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v-~~l~e~l~~aDvVi~atG~~~lI----~~  148 (542)
                      ....++|+|||+|.+|..+|+.|...|.+|++||+++.+.......|... .++.++++++|+||.+......+    ..
T Consensus         6 ~~~~~~IgiIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~aDvVi~~vp~~~~~~~v~~~   85 (306)
T 3l6d_A            6 ESFEFDVSVIGLGAMGTIMAQVLLKQGKRVAIWNRSPGKAAALVAAGAHLCESVKAALSASPATIFVLLDNHATHEVLGM   85 (306)
T ss_dssp             CCCSCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTCEECSSHHHHHHHSSEEEECCSSHHHHHHHHTS
T ss_pred             ccCCCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEEeCCHHHHHHHhcc
Confidence            34567899999999999999999999999999999998876655557654 47888899999999998654322    21


Q ss_pred             HHHhccCCCeEEEeccCCC
Q psy4626         149 EHMDKMKNGCVVCNMGHSN  167 (542)
Q Consensus       149 e~l~~mk~GailvnvG~g~  167 (542)
                      +.+..+++|.++++++...
T Consensus        86 ~~l~~~~~g~ivid~st~~  104 (306)
T 3l6d_A           86 PGVARALAHRTIVDYTTNA  104 (306)
T ss_dssp             TTHHHHTTTCEEEECCCCC
T ss_pred             cchhhccCCCEEEECCCCC
Confidence            1344568999999998764

>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A

Probab=98.17  E-value=2.6e-06  Score=91.10  Aligned_cols=122  Identities=16%  Similarity=0.133  Sum_probs=88.1

Q ss_pred             HHHHHHHHhh-cCccccCcEEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce-eeCH-----------
Q psy4626          61 ESIIDSLKRS-TDVMFGGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVKL-----------  126 (542)
Q Consensus        61 ~s~~~ai~r~-~~~~l~GktVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~-v~~l-----------  126 (542)
                      ...|+++.+. .....+|++|+|+|. |+||+.+++.++.+|++|++++.++.++..+...|++ +++.           
T Consensus       212 ~ta~~al~~~~~~~~~~g~~VlV~GasG~vG~~avqlak~~Ga~vi~~~~~~~~~~~~~~lGa~~vi~~~~~d~~~~~~~  291 (456)
T 3krt_A          212 STAYRQLVSRNGAGMKQGDNVLIWGASGGLGSYATQFALAGGANPICVVSSPQKAEICRAMGAEAIIDRNAEGYRFWKDE  291 (456)
T ss_dssp             HHHHHHHTSTTTTCCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHTCCEEEETTTTTCCSEEET
T ss_pred             HHHHHHHHhhcccCCCCCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEECCHHHHHHHHhhCCcEEEecCcCcccccccc
Confidence            3445565432 123468999999998 9999999999999999999999899888888778875 2221           


Q ss_pred             ------------HHH---h--cCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCCC---cccChHhhcCCCcceee
Q psy4626         127 ------------NEV---I--RTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSN---TEIDVNSLRTPDLTWEK  184 (542)
Q Consensus       127 ------------~e~---l--~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g~---~eid~~aL~~~~l~v~~  184 (542)
                                  +.+   .  .++|+||+++|. ..+ ...++.+++++.++.+|...   .+++...+..+.+++.+
T Consensus       292 ~~~~~~~~~~~~~~i~~~t~g~g~Dvvid~~G~-~~~-~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~i~g  367 (456)
T 3krt_A          292 NTQDPKEWKRFGKRIRELTGGEDIDIVFEHPGR-ETF-GASVFVTRKGGTITTCASTSGYMHEYDNRYLWMSLKRIIG  367 (456)
T ss_dssp             TEECHHHHHHHHHHHHHHHTSCCEEEEEECSCH-HHH-HHHHHHEEEEEEEEESCCTTCSEEEEEHHHHHHTTCEEEE
T ss_pred             cccchHHHHHHHHHHHHHhCCCCCcEEEEcCCc-hhH-HHHHHHhhCCcEEEEEecCCCcccccCHHHHHhcCeEEEE
Confidence                        111   1  479999999997 455 47899999999999998643   34555555444444443

>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1

Probab=98.17  E-value=2.6e-06  Score=86.95  Aligned_cols=179  Identities=16%  Similarity=0.163  Sum_probs=108.1

Q ss_pred             HHhcCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCCCcccChHhhcCCCcceeeeccceeeEecCCCCEEEEecCCC
Q psy4626         128 EVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIVLLAEGR  207 (542)
Q Consensus       128 e~l~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g~~eid~~aL~~~~l~v~~~~~~v~~y~~~dg~~I~LLa~Gr  207 (542)
                      +.++++|+++...     .+.+.++.+++-..+...|.|-+.+|+++.. +++.+...                      
T Consensus        27 ~~~~~~d~~i~~~-----~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~-~gi~v~~~----------------------   78 (303)
T 1qp8_A           27 GDLGNVEAALVSR-----ITAEELAKMPRLKFIQVVTAGLDHLPWESIP-PHVTVAGN----------------------   78 (303)
T ss_dssp             SCCTTBCCCCBSC-----CCHHHHHHCTTCCCEEBSSSCCTTSCCTTSC-TTSCEECC----------------------
T ss_pred             hhhCCCEEEEECC-----CCHHHHhhCCCCcEEEECCcCcccccHHHHh-cCCEEEEC----------------------
Confidence            4457788877432     2346788888888888888887777776542 22222211                      


Q ss_pred             cccccCCCChhHHHh------hHHHHHHHHHHHHhcCCCCCCCCccccCChhhHHHHHHhcCCcccc----ccccccHHH
Q psy4626         208 LVNLSCSSLPSFVVS------ITACTQALALIELFNAPSGRYKSDVYLLPKKMDEYVASLHLPTFDA----HLTELSDEQ  277 (542)
Q Consensus       208 Lvnl~~~thp~~vmd------~sfa~q~la~~~L~~~~~~~~~~gv~~lp~~~d~~VA~l~L~~lg~----~i~~lt~~~  277 (542)
                          ... +...+-+      ++++.++.......+.  ++|....   |..      ++..+++|+    .|++..+++
T Consensus        79 ----~~~-~~~~vAE~~~~~~L~~~R~~~~~~~~~~~--g~w~~~~---~~~------~l~g~~vgIIG~G~IG~~~A~~  142 (303)
T 1qp8_A           79 ----AGS-NADAVAEFALALLLAPYKRIIQYGEKMKR--GDYGRDV---EIP------LIQGEKVAVLGLGEIGTRVGKI  142 (303)
T ss_dssp             ----CSS-SHHHHHHHHHHHHHHHHTTHHHHHHHHHT--TCCCCCS---CCC------CCTTCEEEEESCSTHHHHHHHH
T ss_pred             ----CCC-CchHHHHHHHHHHHHHHhCHHHHHHHHHc--CCCCCCC---CCC------CCCCCEEEEEccCHHHHHHHHH
Confidence                100 1111111      1111111111122222  4675320   110      344556666    888888999


Q ss_pred             HhhcCCC--CCCCCCCCccccCCeeeeehhhhcccCcEEEEcc----CCCCccCHhHHhcCCCCcEEEccCCCCcccccc
Q psy4626         278 AKYMGLN--KAGPFKPSYYSMDGFSVVKLNEVIRTVDIVVTAT----GNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVN  351 (542)
Q Consensus       278 a~~lg~~--e~~p~~a~ea~mdG~~v~~~~~a~~~~d~~~t~t----g~~~vi~~~~~~~mk~gail~n~gh~~~Ei~~~  351 (542)
                      ++.+|+.  -.||... +.  ......+++++++++|+|++++    .++++|+.+.|+.||+|++++|+|+++. +|-.
T Consensus       143 l~~~G~~V~~~dr~~~-~~--~~~~~~~l~ell~~aDvV~l~~P~~~~t~~~i~~~~l~~mk~gailin~srg~~-vd~~  218 (303)
T 1qp8_A          143 LAALGAQVRGFSRTPK-EG--PWRFTNSLEEALREARAAVCALPLNKHTRGLVKYQHLALMAEDAVFVNVGRAEV-LDRD  218 (303)
T ss_dssp             HHHTTCEEEEECSSCC-CS--SSCCBSCSHHHHTTCSEEEECCCCSTTTTTCBCHHHHTTSCTTCEEEECSCGGG-BCHH
T ss_pred             HHHCCCEEEEECCCcc-cc--CcccCCCHHHHHhhCCEEEEeCcCchHHHHHhCHHHHhhCCCCCEEEECCCCcc-cCHH
Confidence            9999983  2344333 22  2333457899999999999943    6899999999999999999999999765 4544


Q ss_pred             ccc
Q psy4626         352 SLR  354 (542)
Q Consensus       352 ~l~  354 (542)
                      +|.
T Consensus       219 aL~  221 (303)
T 1qp8_A          219 GVL  221 (303)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            444

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=98.17  E-value=4.9e-06  Score=78.22  Aligned_cols=102  Identities=19%  Similarity=0.217  Sum_probs=76.1

Q ss_pred             HHHHHHHhhcCccccCcEEEEEc-CChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce-eeCH-----HHH----h
Q psy4626          62 SIIDSLKRSTDVMFGGKQVVLCG-YGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVKL-----NEV----I  130 (542)
Q Consensus        62 s~~~ai~r~~~~~l~GktVvViG-~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~-v~~l-----~e~----l  130 (542)
                      ..|+++.+.. ....|++|+|+| .|.||+.+++.++..|++|+++++++.+...+...|.. +.+.     .+.    .
T Consensus        25 ta~~~l~~~~-~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~  103 (198)
T 1pqw_A           25 TAWHSLCEVG-RLSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSRLGVEYVGDSRSVDFADEILELT  103 (198)
T ss_dssp             HHHHHHHTTS-CCCTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHTTCCSEEEETTCSTHHHHHHHHT
T ss_pred             HHHHHHHHHh-CCCCCCEEEEeeCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCEEeeCCcHHHHHHHHHHh
Confidence            3456664432 245799999999 69999999999999999999999998877666666653 2221     111    1


Q ss_pred             --cCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCC
Q psy4626         131 --RTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHS  166 (542)
Q Consensus       131 --~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g  166 (542)
                        .+.|++|++.|.. .+ .+.++.|++++.++++|..
T Consensus       104 ~~~~~D~vi~~~g~~-~~-~~~~~~l~~~G~~v~~g~~  139 (198)
T 1pqw_A          104 DGYGVDVVLNSLAGE-AI-QRGVQILAPGGRFIELGKK  139 (198)
T ss_dssp             TTCCEEEEEECCCTH-HH-HHHHHTEEEEEEEEECSCG
T ss_pred             CCCCCeEEEECCchH-HH-HHHHHHhccCCEEEEEcCC
Confidence              2589999998853 34 4788999999999999864

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=98.16  E-value=3.1e-06  Score=85.42  Aligned_cols=89  Identities=13%  Similarity=0.151  Sum_probs=73.5

Q ss_pred             cEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCcee-eCHHHHhcCCcEEEEcCCCcccCC---HHHHhc
Q psy4626          78 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV-VKLNEVIRTVDIVVTATGNKNVVT---REHMDK  153 (542)
Q Consensus        78 ktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v-~~l~e~l~~aDvVi~atG~~~lI~---~e~l~~  153 (542)
                      ++|+|||+|.+|..+|+.|...|.+|+++|+++.+.......|... .+++++++ +|+||.|+.+...+.   .+..+.
T Consensus        16 ~~I~vIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~-aDvvi~~vp~~~~~~~v~~~l~~~   94 (296)
T 3qha_A           16 LKLGYIGLGNMGAPMATRMTEWPGGVTVYDIRIEAMTPLAEAGATLADSVADVAA-ADLIHITVLDDAQVREVVGELAGH   94 (296)
T ss_dssp             CCEEEECCSTTHHHHHHHHTTSTTCEEEECSSTTTSHHHHHTTCEECSSHHHHTT-SSEEEECCSSHHHHHHHHHHHHTT
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCCCEEcCCHHHHHh-CCEEEEECCChHHHHHHHHHHHHh
Confidence            5899999999999999999999999999999998877666677765 47888888 999999987542221   345677


Q ss_pred             cCCCeEEEeccCCC
Q psy4626         154 MKNGCVVCNMGHSN  167 (542)
Q Consensus       154 mk~GailvnvG~g~  167 (542)
                      +++|.++++++...
T Consensus        95 l~~g~ivv~~st~~  108 (296)
T 3qha_A           95 AKPGTVIAIHSTIS  108 (296)
T ss_dssp             CCTTCEEEECSCCC
T ss_pred             cCCCCEEEEeCCCC
Confidence            89999999998764

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=98.16  E-value=2.8e-06  Score=87.01  Aligned_cols=112  Identities=11%  Similarity=0.089  Sum_probs=83.3

Q ss_pred             HHHHHHHHhhcCccccCcEEEEEcCC-hhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce-eeC-----HHHHh---
Q psy4626          61 ESIIDSLKRSTDVMFGGKQVVLCGYG-EVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVK-----LNEVI---  130 (542)
Q Consensus        61 ~s~~~ai~r~~~~~l~GktVvViG~G-~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~-v~~-----l~e~l---  130 (542)
                      .+.+.++.+.. ...+|++|+|+|.| .||+.+++.++.+|++|+++++++.+...+...|.+ +++     ..+.+   
T Consensus       130 ~ta~~~~~~~~-~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lga~~~~~~~~~~~~~~~~~~  208 (340)
T 3gms_A          130 LTAWVTCTETL-NLQRNDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNNKHTEELLRLGAAYVIDTSTAPLYETVMEL  208 (340)
T ss_dssp             HHHHHHHHTTS-CCCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCSEEEETTTSCHHHHHHHH
T ss_pred             HHHHHHHHHhc-ccCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhCCCcEEEeCCcccHHHHHHHH
Confidence            34555554332 34589999999998 999999999999999999999999888877777775 332     22221   


Q ss_pred             ---cCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCCC-cccChHhh
Q psy4626         131 ---RTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSN-TEIDVNSL  175 (542)
Q Consensus       131 ---~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g~-~eid~~aL  175 (542)
                         .+.|++|+|+|.....  +.++.+++++.++.+|... .++++..+
T Consensus       209 ~~~~g~Dvvid~~g~~~~~--~~~~~l~~~G~iv~~G~~~~~~~~~~~~  255 (340)
T 3gms_A          209 TNGIGADAAIDSIGGPDGN--ELAFSLRPNGHFLTIGLLSGIQVNWAEI  255 (340)
T ss_dssp             TTTSCEEEEEESSCHHHHH--HHHHTEEEEEEEEECCCTTSCCCCHHHH
T ss_pred             hCCCCCcEEEECCCChhHH--HHHHHhcCCCEEEEEeecCCCCCCHHHh
Confidence               3799999999976543  5678999999999999753 34444433

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A*

Probab=98.15  E-value=3.2e-06  Score=87.43  Aligned_cols=185  Identities=15%  Similarity=0.152  Sum_probs=114.1

Q ss_pred             HHhcCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCCCcccChHhhcCCCcceeeeccceeeEecCCCCEEEEecCCC
Q psy4626         128 EVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIVLLAEGR  207 (542)
Q Consensus       128 e~l~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g~~eid~~aL~~~~l~v~~~~~~v~~y~~~dg~~I~LLa~Gr  207 (542)
                      +.++++|+++....+  -++++.++.+++-..+...|.|-+.+|++++.++++.+....                     
T Consensus        61 ~~~~~~d~~i~~~~~--~~~~~~l~~~p~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~p---------------------  117 (333)
T 3ba1_A           61 LQAESIRAVVGNSNA--GADAELIDALPKLEIVSSFSVGLDKVDLIKCEEKGVRVTNTP---------------------  117 (333)
T ss_dssp             HHTTTEEEEEECSSS--CBCHHHHHHCTTCCEEEESSSCCTTBCHHHHHHHTCEEECCC---------------------
T ss_pred             HHhCCCEEEEEcCCC--CCCHHHHhhCCCCcEEEEcCccccccCHHHHHhCCcEEEECC---------------------
Confidence            345789988864322  467888999999889999999988899988875444333221                     


Q ss_pred             cccccCCCChhHHHhhHH------HHHHHHHHHHhcCCCCCCCCccccCChhhHHHHHHhcCCcccc----ccccccHHH
Q psy4626         208 LVNLSCSSLPSFVVSITA------CTQALALIELFNAPSGRYKSDVYLLPKKMDEYVASLHLPTFDA----HLTELSDEQ  277 (542)
Q Consensus       208 Lvnl~~~thp~~vmd~sf------a~q~la~~~L~~~~~~~~~~gv~~lp~~~d~~VA~l~L~~lg~----~i~~lt~~~  277 (542)
                           .. ++..+-+..+      +.++.......+.  +.|.......+.       ++..+++|+    .+++..+++
T Consensus       118 -----g~-~~~~vAE~~~~l~L~~~R~~~~~~~~~~~--g~w~~~~~~~~~-------~l~g~~vgIIG~G~iG~~vA~~  182 (333)
T 3ba1_A          118 -----DV-LTDDVADLAIGLILAVLRRICECDKYVRR--GAWKFGDFKLTT-------KFSGKRVGIIGLGRIGLAVAER  182 (333)
T ss_dssp             -----ST-THHHHHHHHHHHHHHHHTTHHHHHHHHHT--TGGGGCCCCCCC-------CCTTCCEEEECCSHHHHHHHHH
T ss_pred             -----Cc-chHHHHHHHHHHHHHHHhCHHHHHHHHHc--CCCCcccccccc-------ccCCCEEEEECCCHHHHHHHHH
Confidence                 00 1111111111      1111111122222  456421111111       233445555    888888999


Q ss_pred             HhhcCCCC--CCCCCCCccccCCee-eeehhhhcccCcEEEEcc----CCCCccCHhHHhcCCCCcEEEccCCCCccccc
Q psy4626         278 AKYMGLNK--AGPFKPSYYSMDGFS-VVKLNEVIRTVDIVVTAT----GNKNVVTREHMDKMKNGCVVCNMGHSNTEIDV  350 (542)
Q Consensus       278 a~~lg~~e--~~p~~a~ea~mdG~~-v~~~~~a~~~~d~~~t~t----g~~~vi~~~~~~~mk~gail~n~gh~~~Ei~~  350 (542)
                      ++.+|+..  .||...-   .+|+. ..+++++++++|+|+.++    .++++|+.+.|+.||+|++++|++++.. +|.
T Consensus       183 l~~~G~~V~~~dr~~~~---~~g~~~~~~l~ell~~aDvVil~vP~~~~t~~li~~~~l~~mk~gailIn~srG~~-vd~  258 (333)
T 3ba1_A          183 AEAFDCPISYFSRSKKP---NTNYTYYGSVVELASNSDILVVACPLTPETTHIINREVIDALGPKGVLINIGRGPH-VDE  258 (333)
T ss_dssp             HHTTTCCEEEECSSCCT---TCCSEEESCHHHHHHTCSEEEECSCCCGGGTTCBCHHHHHHHCTTCEEEECSCGGG-BCH
T ss_pred             HHHCCCEEEEECCCchh---ccCceecCCHHHHHhcCCEEEEecCCChHHHHHhhHHHHhcCCCCCEEEECCCCch-hCH
Confidence            99998832  2332221   12655 347899999999999954    4689999999999999999999999875 344


Q ss_pred             cccc
Q psy4626         351 NSLR  354 (542)
Q Consensus       351 ~~l~  354 (542)
                      ++|.
T Consensus       259 ~aL~  262 (333)
T 3ba1_A          259 PELV  262 (333)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4444

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=98.15  E-value=4.6e-06  Score=85.27  Aligned_cols=89  Identities=12%  Similarity=0.162  Sum_probs=70.8

Q ss_pred             cEEEEEcCChhHHHHHHHHHhCC-CEEEEEeCCc-------hhhhhhhcCCceee-CHHHHhcCCcEEEEcCCCcccCC-
Q psy4626          78 KQVVLCGYGEVGKGCCQSLKGLG-CVIYITEIDP-------ICALQACMDGFSVV-KLNEVIRTVDIVVTATGNKNVVT-  147 (542)
Q Consensus        78 ktVvViG~G~IG~~vA~~l~~~G-a~Viv~d~dp-------~r~~~A~~~G~~v~-~l~e~l~~aDvVi~atG~~~lI~-  147 (542)
                      ++|+|||+|.+|..+|..|...| .+|+++|+++       .+.......|. .. ++.++++++|+||.|..+..... 
T Consensus        25 m~IgvIG~G~mG~~lA~~L~~~G~~~V~~~dr~~~~~~~~~~~~~~~~~~g~-~~~s~~e~~~~aDvVi~avp~~~~~~~  103 (317)
T 4ezb_A           25 TTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRFNDPAASGALRARAAELGV-EPLDDVAGIACADVVLSLVVGAATKAV  103 (317)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCSEEEEECGGGGCTTTHHHHHHHHHHTTC-EEESSGGGGGGCSEEEECCCGGGHHHH
T ss_pred             CeEEEECccHHHHHHHHHHHHcCCCeEEEEeCCCccccchHHHHHHHHHCCC-CCCCHHHHHhcCCEEEEecCCHHHHHH
Confidence            68999999999999999999999 8999999987       33333445576 66 78889999999999986543332 


Q ss_pred             -HHHHhccCCCeEEEeccCCC
Q psy4626         148 -REHMDKMKNGCVVCNMGHSN  167 (542)
Q Consensus       148 -~e~l~~mk~GailvnvG~g~  167 (542)
                       .+..+.++++.++++++...
T Consensus       104 ~~~i~~~l~~~~ivv~~st~~  124 (317)
T 4ezb_A          104 AASAAPHLSDEAVFIDLNSVG  124 (317)
T ss_dssp             HHHHGGGCCTTCEEEECCSCC
T ss_pred             HHHHHhhcCCCCEEEECCCCC
Confidence             34456789999999988654

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=98.15  E-value=5.1e-06  Score=86.70  Aligned_cols=94  Identities=16%  Similarity=0.229  Sum_probs=74.3

Q ss_pred             ccccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCcee-eCHHHHhcCC---cEEEEcCCCcccCC-
Q psy4626          73 VMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV-VKLNEVIRTV---DIVVTATGNKNVVT-  147 (542)
Q Consensus        73 ~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v-~~l~e~l~~a---DvVi~atG~~~lI~-  147 (542)
                      .++.+++|+|||+|.+|..+|+.|...|.+|+++|+++.+.......|... .++++++..+   |+||.++... .+. 
T Consensus        18 ~Mm~~mkIgiIGlG~mG~~~A~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~a~~~DvVi~~vp~~-~v~~   96 (358)
T 4e21_A           18 LYFQSMQIGMIGLGRMGADMVRRLRKGGHECVVYDLNVNAVQALEREGIAGARSIEEFCAKLVKPRVVWLMVPAA-VVDS   96 (358)
T ss_dssp             ----CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTTCBCCSSHHHHHHHSCSSCEEEECSCGG-GHHH
T ss_pred             hhhcCCEEEEECchHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHCCCEEeCCHHHHHhcCCCCCEEEEeCCHH-HHHH
Confidence            456678999999999999999999999999999999998877666667654 4778888777   9999998654 221 


Q ss_pred             --HHHHhccCCCeEEEeccCCC
Q psy4626         148 --REHMDKMKNGCVVCNMGHSN  167 (542)
Q Consensus       148 --~e~l~~mk~GailvnvG~g~  167 (542)
                        .+.+..+++|.++++++...
T Consensus        97 vl~~l~~~l~~g~iiId~st~~  118 (358)
T 4e21_A           97 MLQRMTPLLAANDIVIDGGNSH  118 (358)
T ss_dssp             HHHHHGGGCCTTCEEEECSSCC
T ss_pred             HHHHHHhhCCCCCEEEeCCCCC
Confidence              24456789999999998775

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=98.14  E-value=4.6e-06  Score=80.35  Aligned_cols=90  Identities=12%  Similarity=0.227  Sum_probs=69.7

Q ss_pred             cCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCCcEEEEcCCCcccCCHHH--Hhc
Q psy4626          76 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREH--MDK  153 (542)
Q Consensus        76 ~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~aDvVi~atG~~~lI~~e~--l~~  153 (542)
                      .+++++|+|+|.+|..++..+...|.+|+++++++.+.......|....+.+++++++|+||.|+.... +. +.  +..
T Consensus        27 ~~~~I~iiG~G~~G~~la~~l~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~DvVi~av~~~~-~~-~v~~l~~  104 (215)
T 2vns_A           27 EAPKVGILGSGDFARSLATRLVGSGFKVVVGSRNPKRTARLFPSAAQVTFQEEAVSSPEVIFVAVFREH-YS-SLCSLSD  104 (215)
T ss_dssp             --CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSHHHHHHHSBTTSEEEEHHHHTTSCSEEEECSCGGG-SG-GGGGGHH
T ss_pred             CCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCceecHHHHHhCCCEEEECCChHH-HH-HHHHHHH
Confidence            356899999999999999999999999999999988766555557776678888899999999986432 21 22  222


Q ss_pred             cCCCeEEEeccCCC
Q psy4626         154 MKNGCVVCNMGHSN  167 (542)
Q Consensus       154 mk~GailvnvG~g~  167 (542)
                      +.++.++++++.+.
T Consensus       105 ~~~~~~vv~~s~g~  118 (215)
T 2vns_A          105 QLAGKILVDVSNPT  118 (215)
T ss_dssp             HHTTCEEEECCCCC
T ss_pred             hcCCCEEEEeCCCc
Confidence            33789999998874

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=98.14  E-value=3.1e-06  Score=86.55  Aligned_cols=103  Identities=17%  Similarity=0.167  Sum_probs=78.5

Q ss_pred             HHHHHHHHhhcCccccCcEEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCchhhhhhh-cCCce-eeC------HHHHh-
Q psy4626          61 ESIIDSLKRSTDVMFGGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQAC-MDGFS-VVK------LNEVI-  130 (542)
Q Consensus        61 ~s~~~ai~r~~~~~l~GktVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~-~~G~~-v~~------l~e~l-  130 (542)
                      ...|+++.+..+ ...|++|+|+|. |.||+.+++.++..|++|+++++++.+...+. ..|.. +++      +.+.+ 
T Consensus       141 ~ta~~al~~~~~-~~~g~~vlI~Ga~g~iG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~  219 (345)
T 2j3h_A          141 MTAYAGFYEVCS-PKEGETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSKEKVDLLKTKFGFDDAFNYKEESDLTAALK  219 (345)
T ss_dssp             HHHHHHHHTTSC-CCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTSCCSEEEETTSCSCSHHHHH
T ss_pred             HHHHHHHHHHhC-CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCceEEecCCHHHHHHHHH
Confidence            345667644322 457999999997 99999999999999999999999988877666 56764 222      22222 


Q ss_pred             ----cCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCC
Q psy4626         131 ----RTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHS  166 (542)
Q Consensus       131 ----~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g  166 (542)
                          .+.|++|+++|.. .+ ...++.+++++.++.+|..
T Consensus       220 ~~~~~~~d~vi~~~g~~-~~-~~~~~~l~~~G~~v~~G~~  257 (345)
T 2j3h_A          220 RCFPNGIDIYFENVGGK-ML-DAVLVNMNMHGRIAVCGMI  257 (345)
T ss_dssp             HHCTTCEEEEEESSCHH-HH-HHHHTTEEEEEEEEECCCG
T ss_pred             HHhCCCCcEEEECCCHH-HH-HHHHHHHhcCCEEEEEccc
Confidence                3689999999873 44 4789999999999998864

>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}

Probab=98.14  E-value=4.1e-06  Score=85.01  Aligned_cols=90  Identities=17%  Similarity=0.203  Sum_probs=69.4

Q ss_pred             cEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCcee-eCHHHHhcCCcEEEEcCCCcc----cCCHHHHh
Q psy4626          78 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV-VKLNEVIRTVDIVVTATGNKN----VVTREHMD  152 (542)
Q Consensus        78 ktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v-~~l~e~l~~aDvVi~atG~~~----lI~~e~l~  152 (542)
                      ++|++||.|.+|..+|+.|...|.+|++||+++.+.......|... .++.++++.+|+||.+..+..    ++..+.+.
T Consensus         6 ~kIgfIGLG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~~dvvi~~l~~~~~~~~v~~~~~~~   85 (297)
T 4gbj_A            6 EKIAFLGLGNLGTPIAEILLEAGYELVVWNRTASKAEPLTKLGATVVENAIDAITPGGIVFSVLADDAAVEELFSMELVE   85 (297)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEC-------CTTTTTTCEECSSGGGGCCTTCEEEECCSSHHHHHHHSCHHHHH
T ss_pred             CcEEEEecHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCeEeCCHHHHHhcCCceeeeccchhhHHHHHHHHHHh
Confidence            5799999999999999999999999999999998877666778765 468889999999999876543    33345677


Q ss_pred             ccCCCeEEEeccCCC
Q psy4626         153 KMKNGCVVCNMGHSN  167 (542)
Q Consensus       153 ~mk~GailvnvG~g~  167 (542)
                      .+++|.++|+.+...
T Consensus        86 ~~~~~~iiid~sT~~  100 (297)
T 4gbj_A           86 KLGKDGVHVSMSTIS  100 (297)
T ss_dssp             HHCTTCEEEECSCCC
T ss_pred             hcCCCeEEEECCCCC
Confidence            899999999988764

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=98.14  E-value=8.9e-06  Score=73.90  Aligned_cols=71  Identities=17%  Similarity=0.191  Sum_probs=56.4

Q ss_pred             cccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhh-cCCceee--C------HHHH-hcCCcEEEEcCCCc
Q psy4626          74 MFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQAC-MDGFSVV--K------LNEV-IRTVDIVVTATGNK  143 (542)
Q Consensus        74 ~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~-~~G~~v~--~------l~e~-l~~aDvVi~atG~~  143 (542)
                      ...+++|+|+|+|.+|+.+++.|+..|.+|+++|+++.+...+. ..|..++  +      +.++ +.++|+||.++++.
T Consensus        16 ~~~~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~g~~~~~~d~~~~~~l~~~~~~~ad~Vi~~~~~~   95 (155)
T 2g1u_A           16 KQKSKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNEYAFHRLNSEFSGFTVVGDAAEFETLKECGMEKADMVFAFTNDD   95 (155)
T ss_dssp             -CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGGGGSCTTCCSEEEESCTTSHHHHHTTTGGGCSEEEECSSCH
T ss_pred             ccCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHhcCCCcEEEecCCCHHHHHHcCcccCCEEEEEeCCc
Confidence            45789999999999999999999999999999999998876655 5565433  1      1222 57899999999875


Q ss_pred             c
Q psy4626         144 N  144 (542)
Q Consensus       144 ~  144 (542)
                      .
T Consensus        96 ~   96 (155)
T 2g1u_A           96 S   96 (155)
T ss_dssp             H
T ss_pred             H
Confidence            4

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=98.13  E-value=8.5e-06  Score=82.77  Aligned_cols=103  Identities=21%  Similarity=0.270  Sum_probs=78.2

Q ss_pred             HHHHHHHHhhcCccccCcEEEEEc-CChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce-eeCH-----HH-H---
Q psy4626          61 ESIIDSLKRSTDVMFGGKQVVLCG-YGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVKL-----NE-V---  129 (542)
Q Consensus        61 ~s~~~ai~r~~~~~l~GktVvViG-~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~-v~~l-----~e-~---  129 (542)
                      ...|+++.+.. ....|++|+|+| .|.||+.+++.++..|++|+++++++.+...+...|.+ +.+.     .+ +   
T Consensus       126 ~ta~~al~~~~-~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  204 (327)
T 1qor_A          126 LTVYYLLRKTY-EIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKAGAWQVINYREEDLVERLKEI  204 (327)
T ss_dssp             HHHHHHHHTTS-CCCTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHH
T ss_pred             HHHHHHHHHhh-CCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCEEEECCCccHHHHHHHH
Confidence            34567765332 245799999999 69999999999999999999999998877666666654 2221     11 1   


Q ss_pred             h--cCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCC
Q psy4626         130 I--RTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHS  166 (542)
Q Consensus       130 l--~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g  166 (542)
                      .  .+.|++|+++| ...+ ...++.+++++.++.+|..
T Consensus       205 ~~~~~~D~vi~~~g-~~~~-~~~~~~l~~~G~iv~~g~~  241 (327)
T 1qor_A          205 TGGKKVRVVYDSVG-RDTW-ERSLDCLQRRGLMVSFGNS  241 (327)
T ss_dssp             TTTCCEEEEEECSC-GGGH-HHHHHTEEEEEEEEECCCT
T ss_pred             hCCCCceEEEECCc-hHHH-HHHHHHhcCCCEEEEEecC
Confidence            1  25899999999 4455 4789999999999999865

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A*

Probab=98.12  E-value=1.8e-05  Score=82.17  Aligned_cols=90  Identities=16%  Similarity=0.070  Sum_probs=73.5

Q ss_pred             ccCcEEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce-eeCH-----HHHh-----cCCcEEEEcCCC
Q psy4626          75 FGGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVKL-----NEVI-----RTVDIVVTATGN  142 (542)
Q Consensus        75 l~GktVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~-v~~l-----~e~l-----~~aDvVi~atG~  142 (542)
                      ..|++|+|+|. |.+|+.+++.++.+|++|+++. ++.+...+...|++ +++.     .+.+     .++|++++|+|.
T Consensus       163 ~~g~~VlV~Ga~G~vG~~a~qla~~~Ga~Vi~~~-~~~~~~~~~~lGa~~vi~~~~~~~~~~v~~~t~g~~d~v~d~~g~  241 (371)
T 3gqv_A          163 SKPVYVLVYGGSTATATVTMQMLRLSGYIPIATC-SPHNFDLAKSRGAEEVFDYRAPNLAQTIRTYTKNNLRYALDCITN  241 (371)
T ss_dssp             SSCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEE-CGGGHHHHHHTTCSEEEETTSTTHHHHHHHHTTTCCCEEEESSCS
T ss_pred             CCCcEEEEECCCcHHHHHHHHHHHHCCCEEEEEe-CHHHHHHHHHcCCcEEEECCCchHHHHHHHHccCCccEEEECCCc
Confidence            57999999999 8999999999999999999885 78888888888876 3332     2222     359999999998


Q ss_pred             cccCCHHHHhcc-CCCeEEEeccCC
Q psy4626         143 KNVVTREHMDKM-KNGCVVCNMGHS  166 (542)
Q Consensus       143 ~~lI~~e~l~~m-k~GailvnvG~g  166 (542)
                      ...+. ..++.+ ++++.++.+|..
T Consensus       242 ~~~~~-~~~~~l~~~~G~iv~~g~~  265 (371)
T 3gqv_A          242 VESTT-FCFAAIGRAGGHYVSLNPF  265 (371)
T ss_dssp             HHHHH-HHHHHSCTTCEEEEESSCC
T ss_pred             hHHHH-HHHHHhhcCCCEEEEEecC
Confidence            76664 678888 699999999854

>3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A*

Probab=98.12  E-value=6.7e-06  Score=83.72  Aligned_cols=90  Identities=16%  Similarity=0.249  Sum_probs=73.9

Q ss_pred             cEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCcee-eCHHHHhcCCcEEEEcCCCcccCCH------HH
Q psy4626          78 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV-VKLNEVIRTVDIVVTATGNKNVVTR------EH  150 (542)
Q Consensus        78 ktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v-~~l~e~l~~aDvVi~atG~~~lI~~------e~  150 (542)
                      ++|++||.|.+|..+|+.|...|.+|++||+++.+.......|... .++.++++.+|+||+|..+...+..      ..
T Consensus         4 ~kIgfIGlG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~Ga~~a~s~~e~~~~~dvv~~~l~~~~~v~~V~~~~~g~   83 (300)
T 3obb_A            4 KQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLVAAGASAARSARDAVQGADVVISMLPASQHVEGLYLDDDGL   83 (300)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTCEECSSHHHHHTTCSEEEECCSCHHHHHHHHHSSSSS
T ss_pred             CEEEEeeehHHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHHcCCEEcCCHHHHHhcCCceeecCCchHHHHHHHhchhhh
Confidence            5899999999999999999999999999999999887777778764 4788999999999998765544421      13


Q ss_pred             HhccCCCeEEEeccCCC
Q psy4626         151 MDKMKNGCVVCNMGHSN  167 (542)
Q Consensus       151 l~~mk~GailvnvG~g~  167 (542)
                      ++.+++|.++|+.+..+
T Consensus        84 ~~~~~~g~iiId~sT~~  100 (300)
T 3obb_A           84 LAHIAPGTLVLECSTIA  100 (300)
T ss_dssp             TTSCCC-CEEEECSCCC
T ss_pred             hhcCCCCCEEEECCCCC
Confidence            45688999999999774

>1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A*

Probab=98.12  E-value=4.7e-06  Score=84.81  Aligned_cols=106  Identities=20%  Similarity=0.181  Sum_probs=78.9

Q ss_pred             ccCc-EEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce-eeCHHHH----h-----cCCcEEEEcCCC
Q psy4626          75 FGGK-QVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVKLNEV----I-----RTVDIVVTATGN  142 (542)
Q Consensus        75 l~Gk-tVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~-v~~l~e~----l-----~~aDvVi~atG~  142 (542)
                      .+|+ +|+|+|. |.+|+.+++.++.+|++|++++.++.+...+...|++ +++..+.    +     .++|++|+|+|.
T Consensus       148 ~~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~~~~~~~~~d~vid~~g~  227 (330)
T 1tt7_A          148 SPEKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYLKQLGASEVISREDVYDGTLKALSKQQWQGAVDPVGG  227 (330)
T ss_dssp             CGGGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHHHHHTCSEEEEHHHHCSSCCCSSCCCCEEEEEESCCT
T ss_pred             CCCCceEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCcEEEECCCchHHHHHHhhcCCccEEEECCcH
Confidence            4575 8999998 9999999999999999999999988887777777765 3443221    1     358999999997


Q ss_pred             cccCCHHHHhccCCCeEEEeccCCC---cccChHhhcCCCcce
Q psy4626         143 KNVVTREHMDKMKNGCVVCNMGHSN---TEIDVNSLRTPDLTW  182 (542)
Q Consensus       143 ~~lI~~e~l~~mk~GailvnvG~g~---~eid~~aL~~~~l~v  182 (542)
                      . .+ .+.++.+++++.++.+|...   .++++..+..+++++
T Consensus       228 ~-~~-~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~i  268 (330)
T 1tt7_A          228 K-QL-ASLLSKIQYGGSVAVSGLTGGGEVPATVYPFILRGVSL  268 (330)
T ss_dssp             H-HH-HHHHTTEEEEEEEEECCCSSCSCEEECSHHHHTSCCEE
T ss_pred             H-HH-HHHHHhhcCCCEEEEEecCCCCccCcchHHHHhcCeEE
Confidence            4 45 47899999999999998643   234444443344433

>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum}

Probab=98.12  E-value=5.5e-06  Score=84.14  Aligned_cols=163  Identities=17%  Similarity=0.178  Sum_probs=104.0

Q ss_pred             HHhcCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCCCcccChHhhcCCCcceeeeccceeeEecCCCCEEEEecCCC
Q psy4626         128 EVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIVLLAEGR  207 (542)
Q Consensus       128 e~l~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g~~eid~~aL~~~~l~v~~~~~~v~~y~~~dg~~I~LLa~Gr  207 (542)
                      +.++++|+++. .+.+  +      .+++-..+...|.|-+.+|++++.++.+                     +..   
T Consensus        30 ~~~~~ad~li~-~~~~--~------~~~~Lk~I~~~~~G~d~id~~~~~~~~~---------------------~~~---   76 (290)
T 3gvx_A           30 PDYYDAEAQVI-KDRY--V------LGKRTKMIQAISAGVDHIDVNGIPENVV---------------------LCS---   76 (290)
T ss_dssp             TSCCCCSEEEE-SSCC--C------CCSSCCEEEECSSCCTTSCGGGSCTTSE---------------------EEC---
T ss_pred             cchhhhhhhhh-hhhh--h------hhhhhHHHHHHhcCCceeecCCCccceE---------------------Eee---
Confidence            55688999987 3332  2      5677778888898877788877653211                     110   


Q ss_pred             cccccCCCChhHHHhhHHHHHHHHHH-----------HHhcCCCCCCCCccccCChhhHHHHHHhcCCcccc----cccc
Q psy4626         208 LVNLSCSSLPSFVVSITACTQALALI-----------ELFNAPSGRYKSDVYLLPKKMDEYVASLHLPTFDA----HLTE  272 (542)
Q Consensus       208 Lvnl~~~thp~~vmd~sfa~q~la~~-----------~L~~~~~~~~~~gv~~lp~~~d~~VA~l~L~~lg~----~i~~  272 (542)
                        |      | -....+.|..+++.+           .....  ++|....+          -++..+++|+    .|++
T Consensus        77 --~------~-~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~--g~w~~~~~----------~~l~g~tvGIIGlG~IG~  135 (290)
T 3gvx_A           77 --N------A-GAYSISVAEHAFALLLAHAKNILENNELMKA--GIFRQSPT----------TLLYGKALGILGYGGIGR  135 (290)
T ss_dssp             --C------H-HHHHHHHHHHHHHHHHHHHTTHHHHHHHHHT--TCCCCCCC----------CCCTTCEEEEECCSHHHH
T ss_pred             --c------C-CcceeeHHHHHHHHHHHHHHhhhhhhhHhhh--cccccCCc----------eeeecchheeeccCchhH
Confidence              1      0 011123333333322           11222  46654311          1344566666    8888


Q ss_pred             ccHHHHhhcCCCC--CCCCCCCccccCCeeee-ehhhhcccCcEEEE----ccCCCCccCHhHHhcCCCCcEEEccCCCC
Q psy4626         273 LSDEQAKYMGLNK--AGPFKPSYYSMDGFSVV-KLNEVIRTVDIVVT----ATGNKNVVTREHMDKMKNGCVVCNMGHSN  345 (542)
Q Consensus       273 lt~~~a~~lg~~e--~~p~~a~ea~mdG~~v~-~~~~a~~~~d~~~t----~tg~~~vi~~~~~~~mk~gail~n~gh~~  345 (542)
                      ..+++++.+|+..  .||...-..   .++.. +++|+++++|+|++    +..++++|+.+.|+.||+|++++|+|++.
T Consensus       136 ~vA~~l~~~G~~V~~~dr~~~~~~---~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk~gailIN~aRG~  212 (290)
T 3gvx_A          136 RVAHLAKAFGMRVIAYTRSSVDQN---VDVISESPADLFRQSDFVLIAIPLTDKTRGMVNSRLLANARKNLTIVNVARAD  212 (290)
T ss_dssp             HHHHHHHHHTCEEEEECSSCCCTT---CSEECSSHHHHHHHCSEEEECCCCCTTTTTCBSHHHHTTCCTTCEEEECSCGG
T ss_pred             HHHHHHHhhCcEEEEEeccccccc---cccccCChHHHhhccCeEEEEeeccccchhhhhHHHHhhhhcCceEEEeehhc
Confidence            8999999999832  233322211   13333 89999999999999    34578999999999999999999999998


Q ss_pred             cc
Q psy4626         346 TE  347 (542)
Q Consensus       346 ~E  347 (542)
                      .-
T Consensus       213 ~v  214 (290)
T 3gvx_A          213 VV  214 (290)
T ss_dssp             GB
T ss_pred             cc
Confidence            63

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=98.11  E-value=4.6e-06  Score=86.46  Aligned_cols=103  Identities=19%  Similarity=0.173  Sum_probs=79.3

Q ss_pred             HHHHHHHHhhcCccccCcEEEEEc-CChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCcee-eC-----HHHHh---
Q psy4626          61 ESIIDSLKRSTDVMFGGKQVVLCG-YGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV-VK-----LNEVI---  130 (542)
Q Consensus        61 ~s~~~ai~r~~~~~l~GktVvViG-~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v-~~-----l~e~l---  130 (542)
                      ...|+++.+.. ....|++|+|+| .|.||+.+++.++.+|++|+++++++.+...+...|++. ++     ..+.+   
T Consensus       149 ~ta~~al~~~~-~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~  227 (362)
T 2c0c_A          149 TTAYISLKELG-GLSEGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSDEKSAFLKSLGCDRPINYKTEPVGTVLKQE  227 (362)
T ss_dssp             HHHHHHHHHHT-CCCTTCEEEETTTTBTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTTSCHHHHHHHH
T ss_pred             HHHHHHHHHhc-CCCCCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCCcEEEecCChhHHHHHHHh
Confidence            34556665432 245799999999 799999999999999999999999988877777777652 22     22222   


Q ss_pred             --cCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCC
Q psy4626         131 --RTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHS  166 (542)
Q Consensus       131 --~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g  166 (542)
                        .++|++|+|+|.. .+ ...++.+++++.++.+|..
T Consensus       228 ~~~g~D~vid~~g~~-~~-~~~~~~l~~~G~iv~~g~~  263 (362)
T 2c0c_A          228 YPEGVDVVYESVGGA-MF-DLAVDALATKGRLIVIGFI  263 (362)
T ss_dssp             CTTCEEEEEECSCTH-HH-HHHHHHEEEEEEEEECCCG
T ss_pred             cCCCCCEEEECCCHH-HH-HHHHHHHhcCCEEEEEeCC
Confidence              3689999999873 44 4688999999999999864

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=98.10  E-value=5.8e-06  Score=82.76  Aligned_cols=90  Identities=19%  Similarity=0.297  Sum_probs=71.4

Q ss_pred             cEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCcee-eCHHHHhcCCcEEEEcCCCcccCC------HHH
Q psy4626          78 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV-VKLNEVIRTVDIVVTATGNKNVVT------REH  150 (542)
Q Consensus        78 ktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v-~~l~e~l~~aDvVi~atG~~~lI~------~e~  150 (542)
                      .+|+|+|+|.+|..++..+...|.+|+++|+++.+.......|... .+++++++++|+||.|+.++..+.      .+.
T Consensus         6 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~D~vi~~v~~~~~~~~~~~~~~~l   85 (299)
T 1vpd_A            6 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVIITMLPNSPHVKEVALGENGI   85 (299)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCH
T ss_pred             ceEEEECchHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHCCCeecCCHHHHHhCCCEEEEECCCHHHHHHHHhCcchH
Confidence            4799999999999999999999999999999998776555557654 467788889999999987543222      122


Q ss_pred             HhccCCCeEEEeccCCC
Q psy4626         151 MDKMKNGCVVCNMGHSN  167 (542)
Q Consensus       151 l~~mk~GailvnvG~g~  167 (542)
                      .+.+++|.++++++.+.
T Consensus        86 ~~~l~~~~~vv~~s~~~  102 (299)
T 1vpd_A           86 IEGAKPGTVLIDMSSIA  102 (299)
T ss_dssp             HHHCCTTCEEEECSCCC
T ss_pred             hhcCCCCCEEEECCCCC
Confidence            35688999999998764

>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1

Probab=98.07  E-value=5.2e-06  Score=84.38  Aligned_cols=90  Identities=18%  Similarity=0.192  Sum_probs=71.8

Q ss_pred             ccCc-EEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce-eeCH----HHH---h--cCCcEEEEcCCC
Q psy4626          75 FGGK-QVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVKL----NEV---I--RTVDIVVTATGN  142 (542)
Q Consensus        75 l~Gk-tVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~-v~~l----~e~---l--~~aDvVi~atG~  142 (542)
                      .+|+ +|+|+|. |.+|+.+++.++.+|++|++++.++.+...+...|++ +++.    .+.   +  .++|++|+++|.
T Consensus       147 ~~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~~~~~~d~vid~~g~  226 (328)
T 1xa0_A          147 TPERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRVLGAKEVLAREDVMAERIRPLDKQRWAAAVDPVGG  226 (328)
T ss_dssp             CGGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHHTTCSEEEECC---------CCSCCEEEEEECSTT
T ss_pred             CCCCceEEEecCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCcEEEecCCcHHHHHHHhcCCcccEEEECCcH
Confidence            4565 8999998 9999999999999999999999988888777778865 2221    111   1  368999999987


Q ss_pred             cccCCHHHHhccCCCeEEEeccCC
Q psy4626         143 KNVVTREHMDKMKNGCVVCNMGHS  166 (542)
Q Consensus       143 ~~lI~~e~l~~mk~GailvnvG~g  166 (542)
                      . .+ .+.++.+++++.++.+|..
T Consensus       227 ~-~~-~~~~~~l~~~G~~v~~G~~  248 (328)
T 1xa0_A          227 R-TL-ATVLSRMRYGGAVAVSGLT  248 (328)
T ss_dssp             T-TH-HHHHHTEEEEEEEEECSCC
T ss_pred             H-HH-HHHHHhhccCCEEEEEeec
Confidence            4 45 4789999999999999865

>4b4u_A Bifunctional protein fold; oxidoreductase; HET: NAP; 1.45A {Acinetobacter baumannii atcc 19606} PDB: 4b4v_A* 4b4w_A*

Probab=98.07  E-value=1.6e-05  Score=80.81  Aligned_cols=89  Identities=25%  Similarity=0.460  Sum_probs=73.4

Q ss_pred             HHHHHHHHhhcCccccCcEEEEEcCCh-hHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCCcEEEEc
Q psy4626          61 ESIIDSLKRSTDVMFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTA  139 (542)
Q Consensus        61 ~s~~~ai~r~~~~~l~GktVvViG~G~-IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~aDvVi~a  139 (542)
                      .++++-+ +..+..+.||+++|+|-+. +|+-+|..|...||+|++++..             ..++.+.++.|||+|.+
T Consensus       164 ~gv~~lL-~~~~i~l~Gk~vvViGRS~iVGkPla~LL~~~~ATVTi~Hs~-------------T~dl~~~~~~ADIvV~A  229 (303)
T 4b4u_A          164 AGIMTIL-KENNIEIAGKHAVVVGRSAILGKPMAMMLLQANATVTICHSR-------------TQNLPELVKQADIIVGA  229 (303)
T ss_dssp             HHHHHHH-HHTTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT-------------CSSHHHHHHTCSEEEEC
T ss_pred             HHHHHHH-HHHCCCCCCCEEEEEeccccccchHHHHHHhcCCEEEEecCC-------------CCCHHHHhhcCCeEEec
Confidence            4444433 3456789999999999875 6999999999999999999732             24677888999999999


Q ss_pred             CCCcccCCHHHHhccCCCeEEEeccCC
Q psy4626         140 TGNKNVVTREHMDKMKNGCVVCNMGHS  166 (542)
Q Consensus       140 tG~~~lI~~e~l~~mk~GailvnvG~g  166 (542)
                      .|.+++|+.+   ++|+|+++|++|..
T Consensus       230 ~G~p~~i~~d---~vk~GavVIDVGin  253 (303)
T 4b4u_A          230 VGKAELIQKD---WIKQGAVVVDAGFH  253 (303)
T ss_dssp             SCSTTCBCGG---GSCTTCEEEECCCB
T ss_pred             cCCCCccccc---cccCCCEEEEecee
Confidence            9999999854   57999999999954

>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A

Probab=98.07  E-value=8.5e-06  Score=84.04  Aligned_cols=112  Identities=17%  Similarity=0.103  Sum_probs=79.3

Q ss_pred             HHHHHHHhhcCccccC-cEEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCchh----hhhhhcCCce-eeCHHH------
Q psy4626          62 SIIDSLKRSTDVMFGG-KQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPIC----ALQACMDGFS-VVKLNE------  128 (542)
Q Consensus        62 s~~~ai~r~~~~~l~G-ktVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp~r----~~~A~~~G~~-v~~l~e------  128 (542)
                      ..|+++.+..+ ..+| ++|+|.|. |.+|+.+++.++.+|++|+++..++.+    ...+...|++ +++..+      
T Consensus       153 ta~~~l~~~~~-~~~g~~~VlV~Ga~G~vG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~  231 (364)
T 1gu7_A          153 TAYLMLTHYVK-LTPGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELGATQVITEDQNNSREF  231 (364)
T ss_dssp             HHHHHHHSSSC-CCTTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHHHHHHHHHHHTCSEEEEHHHHHCGGG
T ss_pred             HHHHHHHHhhc-cCCCCcEEEECCCCcHHHHHHHHHHHHCCCEEEEEecCccccHHHHHHHHhcCCeEEEecCccchHHH
Confidence            44666665322 3478 99999998 999999999999999998888655543    3445566765 333221      


Q ss_pred             --Hh--------cCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCCC---cccChHhhc
Q psy4626         129 --VI--------RTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSN---TEIDVNSLR  176 (542)
Q Consensus       129 --~l--------~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g~---~eid~~aL~  176 (542)
                        .+        .++|++|+|+|.....  +.++.+++++.++.+|...   ..++...+.
T Consensus       232 ~~~i~~~t~~~~~g~Dvvid~~G~~~~~--~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~  290 (364)
T 1gu7_A          232 GPTIKEWIKQSGGEAKLALNCVGGKSST--GIARKLNNNGLMLTYGGMSFQPVTIPTSLYI  290 (364)
T ss_dssp             HHHHHHHHHHHTCCEEEEEESSCHHHHH--HHHHTSCTTCEEEECCCCSSCCEEECHHHHH
T ss_pred             HHHHHHHhhccCCCceEEEECCCchhHH--HHHHHhccCCEEEEecCCCCCCcccCHHHHh
Confidence              11        2689999999976554  5789999999999998642   334544443

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=98.06  E-value=1.2e-05  Score=81.99  Aligned_cols=103  Identities=19%  Similarity=0.172  Sum_probs=78.3

Q ss_pred             HHHHHHHHhhcCccccCcEEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce-eeC------HHHHh--
Q psy4626          61 ESIIDSLKRSTDVMFGGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVK------LNEVI--  130 (542)
Q Consensus        61 ~s~~~ai~r~~~~~l~GktVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~-v~~------l~e~l--  130 (542)
                      ...|+++.+.. ....|++|+|+|. |.||+.+++.++..|++|+++++++.+...+...|.. +.+      ..+.+  
T Consensus       131 ~ta~~al~~~~-~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~  209 (333)
T 1v3u_A          131 LTAYFGLLEVC-GVKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQIGFDAAFNYKTVNSLEEALKK  209 (333)
T ss_dssp             HHHHHHHHTTS-CCCSSCEEEEESTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTSCSCHHHHHHH
T ss_pred             HHHHHHHHHhh-CCCCCCEEEEecCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcCCcEEEecCCHHHHHHHHHH
Confidence            34566764432 2457999999998 9999999999999999999999988877766666653 222      22222  


Q ss_pred             ---cCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCC
Q psy4626         131 ---RTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHS  166 (542)
Q Consensus       131 ---~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g  166 (542)
                         .+.|++|+++|.. .+ .+.++.+++++.++.+|..
T Consensus       210 ~~~~~~d~vi~~~g~~-~~-~~~~~~l~~~G~~v~~g~~  246 (333)
T 1v3u_A          210 ASPDGYDCYFDNVGGE-FL-NTVLSQMKDFGKIAICGAI  246 (333)
T ss_dssp             HCTTCEEEEEESSCHH-HH-HHHHTTEEEEEEEEECCCC
T ss_pred             HhCCCCeEEEECCChH-HH-HHHHHHHhcCCEEEEEecc
Confidence               2589999999874 34 4788999999999999864

>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A

Probab=98.06  E-value=1.9e-05  Score=81.46  Aligned_cols=117  Identities=17%  Similarity=0.166  Sum_probs=79.2

Q ss_pred             HHHHHHHhhcCccccCcEEEEEcC-ChhHHHHHHHHHhCCCEEEEE-eCCch---hhhhhhcCCce-eeCHH--------
Q psy4626          62 SIIDSLKRSTDVMFGGKQVVLCGY-GEVGKGCCQSLKGLGCVIYIT-EIDPI---CALQACMDGFS-VVKLN--------  127 (542)
Q Consensus        62 s~~~ai~r~~~~~l~GktVvViG~-G~IG~~vA~~l~~~Ga~Viv~-d~dp~---r~~~A~~~G~~-v~~l~--------  127 (542)
                      ..|+++.+.. ...+|++|+|.|. |.+|+.+++.++.+|++|+++ +.++.   +...+...|++ +++..        
T Consensus       154 ta~~~l~~~~-~~~~g~~VlV~Ga~G~vG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~  232 (357)
T 1zsy_A          154 TAYRMLMDFE-QLQPGDSVIQNASNSGVGQAVIQIAAALGLRTINVVRDRPDIQKLSDRLKSLGAEHVITEEELRRPEMK  232 (357)
T ss_dssp             HHHHHHHHSS-CCCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEECCCSCHHHHHHHHHHTTCSEEEEHHHHHSGGGG
T ss_pred             HHHHHHHHHh-ccCCCCEEEEeCCcCHHHHHHHHHHHHcCCEEEEEecCccchHHHHHHHHhcCCcEEEecCcchHHHHH
Confidence            4566665432 2457999999998 999999999999999987665 44332   33456677875 34432        


Q ss_pred             HHhc---CCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCC---CcccChHhhcCCCcc
Q psy4626         128 EVIR---TVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHS---NTEIDVNSLRTPDLT  181 (542)
Q Consensus       128 e~l~---~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g---~~eid~~aL~~~~l~  181 (542)
                      +...   ++|++|+|+|....  .+.++.+++++.++.+|..   +..++...+..++++
T Consensus       233 ~~~~~~~~~Dvvid~~g~~~~--~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~  290 (357)
T 1zsy_A          233 NFFKDMPQPRLALNCVGGKSS--TELLRQLARGGTMVTYGGMAKQPVVASVSLLIFKDLK  290 (357)
T ss_dssp             GTTSSSCCCSEEEESSCHHHH--HHHHTTSCTTCEEEECCCCTTCCBCCCHHHHHHSCCE
T ss_pred             HHHhCCCCceEEEECCCcHHH--HHHHHhhCCCCEEEEEecCCCCCCCCCHHHHHhcCce
Confidence            1122   48999999997654  3589999999999998743   234444444333333

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=98.03  E-value=8.8e-06  Score=82.86  Aligned_cols=91  Identities=13%  Similarity=0.221  Sum_probs=71.6

Q ss_pred             CcEEEEEcCChhHHHHHHHHHhCCC-EEEEEeCC--chhhhhhhcCCcee-eCHHHHhcCCcEEEEcCCCcccCC--HHH
Q psy4626          77 GKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEID--PICALQACMDGFSV-VKLNEVIRTVDIVVTATGNKNVVT--REH  150 (542)
Q Consensus        77 GktVvViG~G~IG~~vA~~l~~~Ga-~Viv~d~d--p~r~~~A~~~G~~v-~~l~e~l~~aDvVi~atG~~~lI~--~e~  150 (542)
                      -.+|+|||+|.+|..+|+.|...|. +|+++|++  +.+...+...|... .++.++++.+|+||.|+.+.....  .+.
T Consensus        24 ~~~I~iIG~G~mG~~~A~~L~~~G~~~V~~~dr~~~~~~~~~~~~~g~~~~~~~~e~~~~aDvVi~~vp~~~~~~~~~~l  103 (312)
T 3qsg_A           24 AMKLGFIGFGEAASAIASGLRQAGAIDMAAYDAASAESWRPRAEELGVSCKASVAEVAGECDVIFSLVTAQAALEVAQQA  103 (312)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHHSCCEEEEECSSCHHHHHHHHHHTTCEECSCHHHHHHHCSEEEECSCTTTHHHHHHHH
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCCeEEEEcCCCCHHHHHHHHHCCCEEeCCHHHHHhcCCEEEEecCchhHHHHHHhh
Confidence            4689999999999999999999999 99999997  35555555667765 467888999999999986543321  244


Q ss_pred             HhccCCCeEEEeccCCC
Q psy4626         151 MDKMKNGCVVCNMGHSN  167 (542)
Q Consensus       151 l~~mk~GailvnvG~g~  167 (542)
                      .+.++++.++++++...
T Consensus       104 ~~~l~~~~ivvd~st~~  120 (312)
T 3qsg_A          104 GPHLCEGALYADFTSCS  120 (312)
T ss_dssp             GGGCCTTCEEEECCCCC
T ss_pred             HhhcCCCCEEEEcCCCC
Confidence            56788999999888654

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=98.01  E-value=5.4e-06  Score=82.35  Aligned_cols=88  Identities=14%  Similarity=0.056  Sum_probs=67.6

Q ss_pred             EEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCCcEEEEcCCCcccCC---HHHHhccC
Q psy4626          79 QVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNKNVVT---REHMDKMK  155 (542)
Q Consensus        79 tVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~aDvVi~atG~~~lI~---~e~l~~mk  155 (542)
                      +|+|+|+|.+|..++..+.. |.+|+++|+++.+.......|....++++++..+|+||.|+.....+.   .+..+.++
T Consensus         3 ~i~iiG~G~~G~~~a~~l~~-g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~D~vi~~v~~~~~~~~v~~~l~~~l~   81 (289)
T 2cvz_A            3 KVAFIGLGAMGYPMAGHLAR-RFPTLVWNRTFEKALRHQEEFGSEAVPLERVAEARVIFTCLPTTREVYEVAEALYPYLR   81 (289)
T ss_dssp             CEEEECCSTTHHHHHHHHHT-TSCEEEECSSTHHHHHHHHHHCCEECCGGGGGGCSEEEECCSSHHHHHHHHHHHTTTCC
T ss_pred             eEEEEcccHHHHHHHHHHhC-CCeEEEEeCCHHHHHHHHHCCCcccCHHHHHhCCCEEEEeCCChHHHHHHHHHHHhhCC
Confidence            69999999999999999999 999999999988765544445544446677889999999987553221   12335678


Q ss_pred             CCeEEEeccCCC
Q psy4626         156 NGCVVCNMGHSN  167 (542)
Q Consensus       156 ~GailvnvG~g~  167 (542)
                      +|.++++++...
T Consensus        82 ~~~~vv~~s~~~   93 (289)
T 2cvz_A           82 EGTYWVDATSGE   93 (289)
T ss_dssp             TTEEEEECSCCC
T ss_pred             CCCEEEECCCCC
Confidence            999999887654

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=98.00  E-value=3e-05  Score=77.41  Aligned_cols=103  Identities=19%  Similarity=0.305  Sum_probs=71.6

Q ss_pred             HHHHHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhh-hhcCC----ceeeCHHHHh-cCCc
Q psy4626          61 ESIIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQ-ACMDG----FSVVKLNEVI-RTVD  134 (542)
Q Consensus        61 ~s~~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~-A~~~G----~~v~~l~e~l-~~aD  134 (542)
                      .+++.++.+. +..+.|++++|+|.|.+|+.++..|...|++|+++++++.++.. +...+    ..+.+.+++. .++|
T Consensus       104 ~G~~~~L~~~-~~~l~~k~vlViGaGg~g~a~a~~L~~~G~~V~v~~R~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~D  182 (271)
T 1nyt_A          104 VGLLSDLERL-SFIRPGLRILLIGAGGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHTGSIQALSMDELEGHEFD  182 (271)
T ss_dssp             HHHHHHHHHH-TCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHTGGGSSEEECCSGGGTTCCCS
T ss_pred             HHHHHHHHhc-CcCcCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHhhccCCeeEecHHHhccCCCC
Confidence            4444555443 34578999999999999999999999999999999999876542 22222    2233433333 5899


Q ss_pred             EEEEcCCCccc-----CCHHHHhccCCCeEEEeccCCC
Q psy4626         135 IVVTATGNKNV-----VTREHMDKMKNGCVVCNMGHSN  167 (542)
Q Consensus       135 vVi~atG~~~l-----I~~e~l~~mk~GailvnvG~g~  167 (542)
                      +||+++|....     +.   .+.++++.+++++...+
T Consensus       183 ivVn~t~~~~~~~~~~i~---~~~l~~~~~v~D~~y~p  217 (271)
T 1nyt_A          183 LIINATSSGISGDIPAIP---SSLIHPGIYCYDMFYQK  217 (271)
T ss_dssp             EEEECCSCGGGTCCCCCC---GGGCCTTCEEEESCCCS
T ss_pred             EEEECCCCCCCCCCCCCC---HHHcCCCCEEEEeccCC
Confidence            99999875432     32   12357888888877654

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=98.00  E-value=3.5e-05  Score=78.21  Aligned_cols=105  Identities=15%  Similarity=0.225  Sum_probs=72.6

Q ss_pred             HHHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCCC-EEEEEeCCchhhhh-hhcCCc---eeeC---HHHHhcCCc
Q psy4626          63 IIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQ-ACMDGF---SVVK---LNEVIRTVD  134 (542)
Q Consensus        63 ~~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga-~Viv~d~dp~r~~~-A~~~G~---~v~~---l~e~l~~aD  134 (542)
                      +..++.+.....+.|++++|+|+|.+|+.++..|...|+ +|+++++++.++.. +...+.   .+.+   +.+.+.++|
T Consensus       127 ~~~~l~~~~~~~l~~~~vlVlGaGg~g~aia~~L~~~G~~~V~v~nR~~~ka~~la~~~~~~~~~~~~~~~~~~~~~~aD  206 (297)
T 2egg_A          127 YVQALEEEMNITLDGKRILVIGAGGGARGIYFSLLSTAAERIDMANRTVEKAERLVREGDERRSAYFSLAEAETRLAEYD  206 (297)
T ss_dssp             HHHHHHHHTTCCCTTCEEEEECCSHHHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHSCSSSCCEECHHHHHHTGGGCS
T ss_pred             HHHHHHHhCCCCCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhhhccCceeeHHHHHhhhccCC
Confidence            334444332145789999999999999999999999998 99999999877543 333333   3433   445678999


Q ss_pred             EEEEcCCCccc--CC--HHHHhccCCCeEEEeccCCC
Q psy4626         135 IVVTATGNKNV--VT--REHMDKMKNGCVVCNMGHSN  167 (542)
Q Consensus       135 vVi~atG~~~l--I~--~e~l~~mk~GailvnvG~g~  167 (542)
                      +||+|++....  ..  .-..+.++++.+++++...+
T Consensus       207 ivIn~t~~~~~~~~~~~~i~~~~l~~~~~v~D~~y~P  243 (297)
T 2egg_A          207 IIINTTSVGMHPRVEVQPLSLERLRPGVIVSDIIYNP  243 (297)
T ss_dssp             EEEECSCTTCSSCCSCCSSCCTTCCTTCEEEECCCSS
T ss_pred             EEEECCCCCCCCCCCCCCCCHHHcCCCCEEEEcCCCC
Confidence            99999864321  00  00134578888988887643

>3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I*

Probab=97.99  E-value=7.1e-06  Score=88.55  Aligned_cols=91  Identities=22%  Similarity=0.295  Sum_probs=71.1

Q ss_pred             cccC-cEEEEEcCChhHHHHHHHHHhC------CCEEEEEeCCch-hhhhhhcCCcee-----eCHHHHhcCCcEEEEcC
Q psy4626          74 MFGG-KQVVLCGYGEVGKGCCQSLKGL------GCVIYITEIDPI-CALQACMDGFSV-----VKLNEVIRTVDIVVTAT  140 (542)
Q Consensus        74 ~l~G-ktVvViG~G~IG~~vA~~l~~~------Ga~Viv~d~dp~-r~~~A~~~G~~v-----~~l~e~l~~aDvVi~at  140 (542)
                      .+.| ++|+|||+|.+|..+|+.|+..      |.+|++.+++.. ....|...|+.+     .++.+++++||+||.++
T Consensus        50 ~L~GiKkIgIIGlGsMG~AmA~nLr~s~~~~g~G~~ViVg~r~~sks~e~A~e~G~~v~d~ta~s~aEAa~~ADVVILaV  129 (525)
T 3fr7_A           50 AFKGIKQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKIGLRKGSKSFDEARAAGFTEESGTLGDIWETVSGSDLVLLLI  129 (525)
T ss_dssp             HTTTCSEEEEECCTTHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHHHTTCCTTTTCEEEHHHHHHHCSEEEECS
T ss_pred             HhcCCCEEEEEeEhHHHHHHHHHHHhcccccCCCCEEEEEeCCchhhHHHHHHCCCEEecCCCCCHHHHHhcCCEEEECC
Confidence            3678 9999999999999999999988      999988765543 344566778764     67889999999999987


Q ss_pred             CCc---ccCCHHHHhccCCCeEEEeccCC
Q psy4626         141 GNK---NVVTREHMDKMKNGCVVCNMGHS  166 (542)
Q Consensus       141 G~~---~lI~~e~l~~mk~GailvnvG~g  166 (542)
                      ...   .++. +.+..||+|++++. .+|
T Consensus       130 P~~~~~eVl~-eI~p~LK~GaILs~-AaG  156 (525)
T 3fr7_A          130 SDAAQADNYE-KIFSHMKPNSILGL-SHG  156 (525)
T ss_dssp             CHHHHHHHHH-HHHHHSCTTCEEEE-SSS
T ss_pred             ChHHHHHHHH-HHHHhcCCCCeEEE-eCC
Confidence            532   3453 67788999998644 444

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=97.99  E-value=1.7e-05  Score=81.74  Aligned_cols=181  Identities=15%  Similarity=0.207  Sum_probs=111.3

Q ss_pred             HHhcCCcEEEEcCCCcccCCHHHHhcc-CCCeEEEeccCCCcccChHhhcCCCcceeeeccceeeEecCCCCEEEEecCC
Q psy4626         128 EVIRTVDIVVTATGNKNVVTREHMDKM-KNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIVLLAEG  206 (542)
Q Consensus       128 e~l~~aDvVi~atG~~~lI~~e~l~~m-k~GailvnvG~g~~eid~~aL~~~~l~v~~~~~~v~~y~~~dg~~I~LLa~G  206 (542)
                      +.++++|+++.....  -++++.++.+ ++-..+...|.|-+.+|++++.++++.+....                    
T Consensus        49 ~~~~~~d~~~~~~~~--~~~~~~l~~~~~~Lk~I~~~~~G~d~id~~~~~~~gi~v~n~~--------------------  106 (330)
T 2gcg_A           49 RGVAGAHGLLCLLSD--HVDKRILDAAGANLKVISTMSVGIDHLALDEIKKRGIRVGYTP--------------------  106 (330)
T ss_dssp             HHHTTCSEEEECTTS--CBCHHHHHHHCTTCCEEEESSSCCTTBCHHHHHHTTCEEECCC--------------------
T ss_pred             HHhcCCeEEEECCCC--CCCHHHHHhcCCCceEEEECCcccccccHHHHHhCCceEEeCC--------------------
Confidence            446789998864332  3677889988 88888889999988899988875544333221                    


Q ss_pred             CcccccCCCChhHHHh------hHHHHHHHHHHHHhcCCCCCCCCc--cccCChhhHHHHHHhcCCcccc----cccccc
Q psy4626         207 RLVNLSCSSLPSFVVS------ITACTQALALIELFNAPSGRYKSD--VYLLPKKMDEYVASLHLPTFDA----HLTELS  274 (542)
Q Consensus       207 rLvnl~~~thp~~vmd------~sfa~q~la~~~L~~~~~~~~~~g--v~~lp~~~d~~VA~l~L~~lg~----~i~~lt  274 (542)
                            .. +...+-+      ++++.++.......+.  ++|...  ......       ++...++|+    .+++..
T Consensus       107 ------~~-~~~~vAe~~~~~~L~~~R~~~~~~~~~~~--~~w~~~~~~~~~~~-------~l~g~~vgIIG~G~iG~~i  170 (330)
T 2gcg_A          107 ------DV-LTDTTAELAVSLLLTTCRRLPEAIEEVKN--GGWTSWKPLWLCGY-------GLTQSTVGIIGLGRIGQAI  170 (330)
T ss_dssp             ------ST-THHHHHHHHHHHHHHHHTTHHHHHHHHHT--TCCCSCCTTSSCBC-------CCTTCEEEEECCSHHHHHH
T ss_pred             ------CC-ChHHHHHHHHHHHHHHHhCHHHHHHHHHc--CCCcccCcccccCc-------CCCCCEEEEECcCHHHHHH
Confidence                  00 1111111      1111111111122222  456421  000001       223344554    777778


Q ss_pred             HHHHhhcCCCC--CC--CCCCCccccCCeeeeehhhhcccCcEEEEcc----CCCCccCHhHHhcCCCCcEEEccCCCCc
Q psy4626         275 DEQAKYMGLNK--AG--PFKPSYYSMDGFSVVKLNEVIRTVDIVVTAT----GNKNVVTREHMDKMKNGCVVCNMGHSNT  346 (542)
Q Consensus       275 ~~~a~~lg~~e--~~--p~~a~ea~mdG~~v~~~~~a~~~~d~~~t~t----g~~~vi~~~~~~~mk~gail~n~gh~~~  346 (542)
                      +++++.+|+..  .|  +.+..++.-.|....+++++++.+|+|+.++    .++++|+.+.++.||+|++++|++++..
T Consensus       171 A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~l~e~l~~aDvVi~~vp~~~~t~~~i~~~~~~~mk~gailIn~srg~~  250 (330)
T 2gcg_A          171 ARRLKPFGVQRFLYTGRQPRPEEAAEFQAEFVSTPELAAQSDFIVVACSLTPATEGLCNKDFFQKMKETAVFINISRGDV  250 (330)
T ss_dssp             HHHHGGGTCCEEEEESSSCCHHHHHTTTCEECCHHHHHHHCSEEEECCCCCTTTTTCBSHHHHHHSCTTCEEEECSCGGG
T ss_pred             HHHHHHCCCEEEEECCCCcchhHHHhcCceeCCHHHHHhhCCEEEEeCCCChHHHHhhCHHHHhcCCCCcEEEECCCCcc
Confidence            88888888742  23  3222222234666668899999999999955    4688999999999999999999999865

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=97.98  E-value=1.5e-05  Score=78.18  Aligned_cols=92  Identities=21%  Similarity=0.368  Sum_probs=66.1

Q ss_pred             ccccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchh--------------hhh-hhcCC-ceeeCHHHHhcCCcEE
Q psy4626          73 VMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPIC--------------ALQ-ACMDG-FSVVKLNEVIRTVDIV  136 (542)
Q Consensus        73 ~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r--------------~~~-A~~~G-~~v~~l~e~l~~aDvV  136 (542)
                      ..+.+++++|+|+|.+|..+|+.|...|.+|+++|+++.+              ... +...| ....+..++++++|+|
T Consensus        15 ~~~~~~kIgiIG~G~mG~alA~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aDvV   94 (245)
T 3dtt_A           15 LYFQGMKIAVLGTGTVGRTMAGALADLGHEVTIGTRDPKATLARAEPDAMGAPPFSQWLPEHPHVHLAAFADVAAGAELV   94 (245)
T ss_dssp             ----CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHTCC-------CCHHHHGGGSTTCEEEEHHHHHHHCSEE
T ss_pred             cccCCCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCChhhhhhhhhhhhhcchhhhHHHhhcCceeccCHHHHHhcCCEE
Confidence            4577999999999999999999999999999999999886              222 12223 3456778889999999


Q ss_pred             EEcCCCcccCC--HHH-HhccCCCeEEEeccC
Q psy4626         137 VTATGNKNVVT--REH-MDKMKNGCVVCNMGH  165 (542)
Q Consensus       137 i~atG~~~lI~--~e~-l~~mk~GailvnvG~  165 (542)
                      |.|+.......  .+. ...+ ++.++++++-
T Consensus        95 ilavp~~~~~~~~~~i~~~~l-~g~ivi~~s~  125 (245)
T 3dtt_A           95 VNATEGASSIAALTAAGAENL-AGKILVDIAN  125 (245)
T ss_dssp             EECSCGGGHHHHHHHHCHHHH-TTSEEEECCC
T ss_pred             EEccCcHHHHHHHHHhhhhhc-CCCEEEECCC
Confidence            99986543321  111 1233 7899999883

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=97.98  E-value=1.8e-05  Score=79.14  Aligned_cols=90  Identities=20%  Similarity=0.300  Sum_probs=70.4

Q ss_pred             cEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCcee-eCHHHHhcCCcEEEEcCCCcccCCH------HH
Q psy4626          78 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV-VKLNEVIRTVDIVVTATGNKNVVTR------EH  150 (542)
Q Consensus        78 ktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v-~~l~e~l~~aDvVi~atG~~~lI~~------e~  150 (542)
                      .+|+|+|+|.+|..++..+...|.+|+++|+++.+.......|... .++++++..+|+||.|+..+..+..      +.
T Consensus         5 ~~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~D~vi~~vp~~~~~~~v~~~~~~l   84 (301)
T 3cky_A            5 IKIGFIGLGAMGKPMAINLLKEGVTVYAFDLMEANVAAVVAQGAQACENNQKVAAASDIIFTSLPNAGIVETVMNGPGGV   84 (301)
T ss_dssp             CEEEEECCCTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHTTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCH
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCCCeecCCHHHHHhCCCEEEEECCCHHHHHHHHcCcchH
Confidence            5899999999999999999999999999999988766555557654 3677888899999999854332210      22


Q ss_pred             HhccCCCeEEEeccCCC
Q psy4626         151 MDKMKNGCVVCNMGHSN  167 (542)
Q Consensus       151 l~~mk~GailvnvG~g~  167 (542)
                      ...++++.++++++.+.
T Consensus        85 ~~~l~~~~~vv~~~~~~  101 (301)
T 3cky_A           85 LSACKAGTVIVDMSSVS  101 (301)
T ss_dssp             HHHSCTTCEEEECCCCC
T ss_pred             hhcCCCCCEEEECCCCC
Confidence            34678999999988764

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=97.98  E-value=8.8e-06  Score=81.38  Aligned_cols=88  Identities=19%  Similarity=0.252  Sum_probs=68.9

Q ss_pred             cEEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCCcEEEEcCCCcc---cCCHHHHhc
Q psy4626          78 KQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNKN---VVTREHMDK  153 (542)
Q Consensus        78 ktVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~aDvVi~atG~~~---lI~~e~l~~  153 (542)
                      .+|+|+|+ |.+|..++..|...|.+|+++|+++.+.......|....+..++++.+|+||.|+....   ++ .+....
T Consensus        12 m~I~iIG~tG~mG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~aDvVi~av~~~~~~~v~-~~l~~~   90 (286)
T 3c24_A           12 KTVAILGAGGKMGARITRKIHDSAHHLAAIEIAPEGRDRLQGMGIPLTDGDGWIDEADVVVLALPDNIIEKVA-EDIVPR   90 (286)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHSSSEEEEECCSHHHHHHHHHTTCCCCCSSGGGGTCSEEEECSCHHHHHHHH-HHHGGG
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHhcCCCcCCHHHHhcCCCEEEEcCCchHHHHHH-HHHHHh
Confidence            48999999 99999999999999999999999987766554566655566778889999999986433   22 123345


Q ss_pred             cCCCeEEEeccCC
Q psy4626         154 MKNGCVVCNMGHS  166 (542)
Q Consensus       154 mk~GailvnvG~g  166 (542)
                      ++++.++++++.+
T Consensus        91 l~~~~ivv~~s~~  103 (286)
T 3c24_A           91 VRPGTIVLILDAA  103 (286)
T ss_dssp             SCTTCEEEESCSH
T ss_pred             CCCCCEEEECCCC
Confidence            6889999987655

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=97.97  E-value=1.6e-05  Score=78.89  Aligned_cols=87  Identities=13%  Similarity=0.182  Sum_probs=67.9

Q ss_pred             EEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce---eeCHHHHhcCCcEEEEcCCCc---ccCCHHHHh
Q psy4626          79 QVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS---VVKLNEVIRTVDIVVTATGNK---NVVTREHMD  152 (542)
Q Consensus        79 tVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~---v~~l~e~l~~aDvVi~atG~~---~lI~~e~l~  152 (542)
                      +|+|+|+|.+|..++..+...|.+|+++|+++.+...+...|..   ..+++++ .++|+||.|+...   .++ .+...
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~D~vi~av~~~~~~~~~-~~l~~   79 (279)
T 2f1k_A            2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQLVDEAGQDLSLL-QTAKIIFLCTPIQLILPTL-EKLIP   79 (279)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTSCSEEESCGGGG-TTCSEEEECSCHHHHHHHH-HHHGG
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHhCCCCccccCCHHHh-CCCCEEEEECCHHHHHHHH-HHHHh
Confidence            79999999999999999999999999999998877655555652   3466777 8999999998643   222 23345


Q ss_pred             ccCCCeEEEeccCCC
Q psy4626         153 KMKNGCVVCNMGHSN  167 (542)
Q Consensus       153 ~mk~GailvnvG~g~  167 (542)
                      .+++++++++++...
T Consensus        80 ~~~~~~~vv~~~~~~   94 (279)
T 2f1k_A           80 HLSPTAIVTDVASVK   94 (279)
T ss_dssp             GSCTTCEEEECCSCC
T ss_pred             hCCCCCEEEECCCCc
Confidence            678899999986543

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=97.97  E-value=1.6e-05  Score=80.36  Aligned_cols=89  Identities=17%  Similarity=0.260  Sum_probs=70.5

Q ss_pred             cEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceee-CHHHHhcCCcEEEEcCCCcccCCHHHH-----
Q psy4626          78 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVV-KLNEVIRTVDIVVTATGNKNVVTREHM-----  151 (542)
Q Consensus        78 ktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~-~l~e~l~~aDvVi~atG~~~lI~~e~l-----  151 (542)
                      .+|+|+|+|.+|..+|..|...|.+|+++|+++.+.......|..+. +.++++.++|+||.|+.++..+. +.+     
T Consensus        31 ~~I~iIG~G~mG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~DvVi~av~~~~~~~-~v~~~~~~  109 (316)
T 2uyy_A           31 KKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDITFACVSDPKAAK-DLVLGPSG  109 (316)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEECSSGGGGHHHHHTTCEECSCHHHHHHHCSEEEECCSSHHHHH-HHHHSTTC
T ss_pred             CeEEEEcccHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHcCCEEcCCHHHHHhcCCEEEEeCCCHHHHH-HHHcCchh
Confidence            67999999999999999999999999999999887665555676543 67788889999999987443332 222     


Q ss_pred             --hccCCCeEEEeccCCC
Q psy4626         152 --DKMKNGCVVCNMGHSN  167 (542)
Q Consensus       152 --~~mk~GailvnvG~g~  167 (542)
                        +.++++..+++++...
T Consensus       110 ~~~~l~~~~~vv~~s~~~  127 (316)
T 2uyy_A          110 VLQGIRPGKCYVDMSTVD  127 (316)
T ss_dssp             GGGGCCTTCEEEECSCCC
T ss_pred             HhhcCCCCCEEEECCCCC
Confidence              4578999999988654

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=97.96  E-value=8.1e-06  Score=83.00  Aligned_cols=88  Identities=16%  Similarity=0.265  Sum_probs=65.8

Q ss_pred             cCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcC-------Ccee-eCHHHHhcCCcEEEEcCCCcccCC
Q psy4626          76 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMD-------GFSV-VKLNEVIRTVDIVVTATGNKNVVT  147 (542)
Q Consensus        76 ~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~-------G~~v-~~l~e~l~~aDvVi~atG~~~lI~  147 (542)
                      .-++|+|+|.|.+|.++|+.+. .|.+|+++|+++.++..+...       +..+ .++++ +++||+||+|.....-+.
T Consensus        11 ~~~~V~vIG~G~MG~~iA~~la-aG~~V~v~d~~~~~~~~~~~~l~~~~~~~i~~~~~~~~-~~~aDlVieavpe~~~vk   88 (293)
T 1zej_A           11 HHMKVFVIGAGLMGRGIAIAIA-SKHEVVLQDVSEKALEAAREQIPEELLSKIEFTTTLEK-VKDCDIVMEAVFEDLNTK   88 (293)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHH-TTSEEEEECSCHHHHHHHHHHSCGGGGGGEEEESSCTT-GGGCSEEEECCCSCHHHH
T ss_pred             CCCeEEEEeeCHHHHHHHHHHH-cCCEEEEEECCHHHHHHHHHHHHHHHhCCeEEeCCHHH-HcCCCEEEEcCcCCHHHH
Confidence            4789999999999999999999 999999999999877655443       4443 34555 789999999875433222


Q ss_pred             HH---HHhccCCCeEEE-eccCC
Q psy4626         148 RE---HMDKMKNGCVVC-NMGHS  166 (542)
Q Consensus       148 ~e---~l~~mk~Gailv-nvG~g  166 (542)
                      ..   .++.+ ++++++ |++..
T Consensus        89 ~~l~~~l~~~-~~~IlasntSti  110 (293)
T 1zej_A           89 VEVLREVERL-TNAPLCSNTSVI  110 (293)
T ss_dssp             HHHHHHHHTT-CCSCEEECCSSS
T ss_pred             HHHHHHHhcC-CCCEEEEECCCc
Confidence            22   25666 898885 77654

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=97.96  E-value=2.4e-05  Score=82.05  Aligned_cols=220  Identities=16%  Similarity=0.171  Sum_probs=118.9

Q ss_pred             HHHHHHHhCCCEEEEEeCCc-----hhhhhhhcCCceeeC-HHHHhcCCcEEEEcCCCccc---CCHHHHhccCCCeEEE
Q psy4626          91 GCCQSLKGLGCVIYITEIDP-----ICALQACMDGFSVVK-LNEVIRTVDIVVTATGNKNV---VTREHMDKMKNGCVVC  161 (542)
Q Consensus        91 ~vA~~l~~~Ga~Viv~d~dp-----~r~~~A~~~G~~v~~-l~e~l~~aDvVi~atG~~~l---I~~e~l~~mk~Gailv  161 (542)
                      ..++.|...|.+|++- .+.     +...+....|+.+++ .++.+.++|+|+... . ++   ++.+.++.++++..++
T Consensus        21 ~~v~~L~~~G~~V~ve-~~ag~~~~~~d~~y~~aGa~i~~~~~~~~~~adiil~v~-~-p~~~~~~~~~i~~l~~~~~~i   97 (384)
T 1l7d_A           21 EVVKKLVGLGFEVIVE-QGAGVGASITDDALTAAGATIASTAAQALSQADVVWKVQ-R-PMTAEEGTDEVALIKEGAVLM   97 (384)
T ss_dssp             HHHHHHHHTTCEEEEE-TTTTGGGTCCHHHHHHTTCEEESSHHHHHSSCSEEEEEE-C-CCCGGGSCCGGGGSCTTCEEE
T ss_pred             HHHHHHHhCCCEEEEE-cCCCccCCCCHHHHHHCCCEEecChhhhhcCCCEEEEec-C-cccccCCHHHHHhhccCCEEE
Confidence            3456777788888652 222     111222345777664 467888999988642 1 22   1457889999988887


Q ss_pred             eccCC-CcccChHhhcCCCcceeeeccceeeEecCCCCEEEEecCCCcccccCCCChhHHHhhHHHHHHHHHHHHhcCCC
Q psy4626         162 NMGHS-NTEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIVLLAEGRLVNLSCSSLPSFVVSITACTQALALIELFNAPS  240 (542)
Q Consensus       162 nvG~g-~~eid~~aL~~~~l~v~~~~~~v~~y~~~dg~~I~LLa~GrLvnl~~~thp~~vmd~sfa~q~la~~~L~~~~~  240 (542)
                      ...+. .+..+++++.++.+++.... .+     +     ...+.+.++-|.    |+....-..+  ++...+.+    
T Consensus        98 ~~~~~~~~~~~~~~~~~~gi~~~~~e-~~-----~-----~~~~~~~l~~l~----~~a~~ag~~a--v~~~~~~~----  156 (384)
T 1l7d_A           98 CHLGALTNRPVVEALTKRKITAYAME-LM-----P-----RISRAQSMDILS----SQSNLAGYRA--VIDGAYEF----  156 (384)
T ss_dssp             EECCGGGCHHHHHHHHHTTCEEEEGG-GC-----C-----CSGGGGGGCHHH----HHHHHHHHHH--HHHHHHHC----
T ss_pred             EEecccCCHHHHHHHHHCCCEEEEec-cc-----c-----ccccccccchhh----HHHHHHHHHH--HHHHHHHh----
Confidence            54443 34556777776655543211 00     0     000111122111    1111111111  22222221    


Q ss_pred             CCCCCc----cccCChhhHHHHHHhcCCcccc-ccccccHHHHhhcCCC----CCCCCCCCccccCCeeee---e-----
Q psy4626         241 GRYKSD----VYLLPKKMDEYVASLHLPTFDA-HLTELSDEQAKYMGLN----KAGPFKPSYYSMDGFSVV---K-----  303 (542)
Q Consensus       241 ~~~~~g----v~~lp~~~d~~VA~l~L~~lg~-~i~~lt~~~a~~lg~~----e~~p~~a~ea~mdG~~v~---~-----  303 (542)
                      +++.+.    +..+|..        +.-.+|. .++....+.++.+|+.    +..|.+.-++.--|.++.   .     
T Consensus       157 ~~~~~~~~~~~~~l~g~--------~V~ViGaG~iG~~aa~~a~~~Ga~V~~~d~~~~~~~~~~~~Ga~~~~i~~~~~~~  228 (384)
T 1l7d_A          157 ARAFPMMMTAAGTVPPA--------RVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGGKFITVDDEAMKT  228 (384)
T ss_dssp             SSCSSCEEETTEEECCC--------EEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHTTCEECCC-------
T ss_pred             hhcccchhccCCCCCCC--------EEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeeccccccc
Confidence            122111    1111111        1222233 7777788888888873    334554333322343322   1     


Q ss_pred             ----------------------hhhhcccCcEEEEcc---CC--CCccCHhHHhcCCCCcEEEccC
Q psy4626         304 ----------------------LNEVIRTVDIVVTAT---GN--KNVVTREHMDKMKNGCVVCNMG  342 (542)
Q Consensus       304 ----------------------~~~a~~~~d~~~t~t---g~--~~vi~~~~~~~mk~gail~n~g  342 (542)
                                            +++.++.+|+||+++   |.  +.+|+.+.++.||+|++++|.|
T Consensus       229 ~~~~~~~~~~~s~~~~~~~~~~l~~~~~~aDvVi~~~~~pg~~~~~li~~~~l~~mk~g~vivdva  294 (384)
T 1l7d_A          229 AETAGGYAKEMGEEFRKKQAEAVLKELVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVIIDLA  294 (384)
T ss_dssp             ----------------CCHHHHHHHHHTTCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEEETT
T ss_pred             ccccccchhhcCHHHHhhhHHHHHHHhCCCCEEEECCccCCCCCCeeeCHHHHhcCCCCCEEEEEe
Confidence                                  678889999999999   74  4588999999999999999999

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=97.95  E-value=1.5e-05  Score=79.51  Aligned_cols=88  Identities=19%  Similarity=0.254  Sum_probs=68.5

Q ss_pred             EEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCcee-eCHHHHhcCCcEEEEcCCCcccCCHHH-------
Q psy4626          79 QVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV-VKLNEVIRTVDIVVTATGNKNVVTREH-------  150 (542)
Q Consensus        79 tVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v-~~l~e~l~~aDvVi~atG~~~lI~~e~-------  150 (542)
                      +|+|+|+|.+|..++..+...|.+|+++|+++.+.......|..+ .+++++++.+|+||.|+..+..+. +.       
T Consensus         2 ~i~iiG~G~mG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Dvvi~~vp~~~~~~-~v~~~~~~~   80 (296)
T 2gf2_A            2 PVGFIGLGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFQDAGEQVVSSPADVAEKADRIITMLPTSINAI-EAYSGANGI   80 (296)
T ss_dssp             CEEEECCSTTHHHHHHHHHHTTCCEEEECSSTHHHHHHHTTTCEECSSHHHHHHHCSEEEECCSSHHHHH-HHHHSTTSG
T ss_pred             eEEEEeccHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEeCCCHHHHH-HHHhCchhH
Confidence            689999999999999999999999999999998776655667764 467788889999999975432221 22       


Q ss_pred             HhccCCCeEEEeccCCC
Q psy4626         151 MDKMKNGCVVCNMGHSN  167 (542)
Q Consensus       151 l~~mk~GailvnvG~g~  167 (542)
                      ++.++++.++++++...
T Consensus        81 ~~~l~~~~~vv~~s~~~   97 (296)
T 2gf2_A           81 LKKVKKGSLLIDSSTID   97 (296)
T ss_dssp             GGTCCTTCEEEECSCCC
T ss_pred             HhcCCCCCEEEECCCCC
Confidence            23568899999966543

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.95  E-value=1.1e-05  Score=75.05  Aligned_cols=91  Identities=21%  Similarity=0.293  Sum_probs=65.6

Q ss_pred             cccCcEEEEEcCChhHHHHHHHHHhC-CCEEEEEeCCchhhhhhhcCCceee--C------HHHH--hcCCcEEEEcCCC
Q psy4626          74 MFGGKQVVLCGYGEVGKGCCQSLKGL-GCVIYITEIDPICALQACMDGFSVV--K------LNEV--IRTVDIVVTATGN  142 (542)
Q Consensus        74 ~l~GktVvViG~G~IG~~vA~~l~~~-Ga~Viv~d~dp~r~~~A~~~G~~v~--~------l~e~--l~~aDvVi~atG~  142 (542)
                      .+.+++++|+|+|.+|+.+++.|+.. |.+|+++|+++.+...+...|+.++  +      +.++  +.++|+||.++++
T Consensus        36 ~~~~~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~~~~~~~~~~g~~~~~gd~~~~~~l~~~~~~~~ad~vi~~~~~  115 (183)
T 3c85_A           36 NPGHAQVLILGMGRIGTGAYDELRARYGKISLGIEIREEAAQQHRSEGRNVISGDATDPDFWERILDTGHVKLVLLAMPH  115 (183)
T ss_dssp             CCTTCSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCHHHHHHHHHTTCCEEECCTTCHHHHHTBCSCCCCCEEEECCSS
T ss_pred             CCCCCcEEEECCCHHHHHHHHHHHhccCCeEEEEECCHHHHHHHHHCCCCEEEcCCCCHHHHHhccCCCCCCEEEEeCCC
Confidence            45688999999999999999999999 9999999999988776666676543  2      2333  5689999999876


Q ss_pred             cccCC--HHHHhccCCCeEEEecc
Q psy4626         143 KNVVT--REHMDKMKNGCVVCNMG  164 (542)
Q Consensus       143 ~~lI~--~e~l~~mk~GailvnvG  164 (542)
                      .....  ...+..+.+...++...
T Consensus       116 ~~~~~~~~~~~~~~~~~~~ii~~~  139 (183)
T 3c85_A          116 HQGNQTALEQLQRRNYKGQIAAIA  139 (183)
T ss_dssp             HHHHHHHHHHHHHTTCCSEEEEEE
T ss_pred             hHHHHHHHHHHHHHCCCCEEEEEE
Confidence            43211  12344455455555444

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii}

Probab=97.94  E-value=1.8e-05  Score=81.64  Aligned_cols=184  Identities=15%  Similarity=0.177  Sum_probs=112.2

Q ss_pred             HHhcCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCCCcccChHhhcCCCcceeeeccceeeEecCCCCEEEEecCCC
Q psy4626         128 EVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIVLLAEGR  207 (542)
Q Consensus       128 e~l~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g~~eid~~aL~~~~l~v~~~~~~v~~y~~~dg~~I~LLa~Gr  207 (542)
                      +.++++|+++.....  -++++.++.+++-..+...|.|-+.+|++++..+++.+.....                    
T Consensus        38 ~~~~~~d~~i~~~~~--~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gi~v~n~~~--------------------   95 (333)
T 2d0i_A           38 GVIGRFDGIIVSPTT--KITREVLENAERLKVISCHSAGYDNIDLEEATKRGIYVTKVSG--------------------   95 (333)
T ss_dssp             HHGGGCSEEEECTTS--CBCHHHHTTCTTCCEEEESSSCCTTBCHHHHHHTTCEEECCCH--------------------
T ss_pred             HHhcCCEEEEECCCC--CCCHHHHhhCCCceEEEECCcccccccHHHHHhCCcEEEeCCC--------------------
Confidence            446889999865433  4678889999999999999999888999888755544332210                    


Q ss_pred             cccccCCCChhHHHh------hHHHHHHHHHHHHhcCCCCCCCCcc-ccCChhhHHHHHHhcCCcccc----ccccccHH
Q psy4626         208 LVNLSCSSLPSFVVS------ITACTQALALIELFNAPSGRYKSDV-YLLPKKMDEYVASLHLPTFDA----HLTELSDE  276 (542)
Q Consensus       208 Lvnl~~~thp~~vmd------~sfa~q~la~~~L~~~~~~~~~~gv-~~lp~~~d~~VA~l~L~~lg~----~i~~lt~~  276 (542)
                       .|      +..+-+      ++++.++.......++  +.|...- ...+..   .+-++..+++|+    .+++..++
T Consensus        96 -~~------~~~vAE~~~~~~L~~~R~~~~~~~~~~~--g~w~~~~~~~~~~~---~~~~l~g~~vgIIG~G~iG~~vA~  163 (333)
T 2d0i_A           96 -LL------SEAVAEFTVGLIINLMRKIHYADKFIRR--GEWESHAKIWTGFK---RIESLYGKKVGILGMGAIGKAIAR  163 (333)
T ss_dssp             -HH------HHHHHHHHHHHHHHHHHCHHHHHHHHHT--TCCCCHHHHHTTSC---CCCCSTTCEEEEECCSHHHHHHHH
T ss_pred             -cC------hHHHHHHHHHHHHHHHhHHHHHHHHHHc--CCCCcCcccccCCc---ccCCCCcCEEEEEccCHHHHHHHH
Confidence             00      111111      1122222111222222  4674310 000000   001234455555    78888888


Q ss_pred             HHhhcCCC--CCCCCCCC-ccccCCeeeeehhhhcccCcEEEEcc----CCCCccCHhHHhcCCCCcEEEccCCCCc
Q psy4626         277 QAKYMGLN--KAGPFKPS-YYSMDGFSVVKLNEVIRTVDIVVTAT----GNKNVVTREHMDKMKNGCVVCNMGHSNT  346 (542)
Q Consensus       277 ~a~~lg~~--e~~p~~a~-ea~mdG~~v~~~~~a~~~~d~~~t~t----g~~~vi~~~~~~~mk~gail~n~gh~~~  346 (542)
                      +++.+|+.  -.||.... .+.-.|.+..+++++++++|+|+.++    .++++|+.+.++.||+| +++|++++..
T Consensus       164 ~l~~~G~~V~~~d~~~~~~~~~~~g~~~~~l~e~l~~aDiVil~vp~~~~t~~~i~~~~~~~mk~g-ilin~srg~~  239 (333)
T 2d0i_A          164 RLIPFGVKLYYWSRHRKVNVEKELKARYMDIDELLEKSDIVILALPLTRDTYHIINEERVKKLEGK-YLVNIGRGAL  239 (333)
T ss_dssp             HHGGGTCEEEEECSSCCHHHHHHHTEEECCHHHHHHHCSEEEECCCCCTTTTTSBCHHHHHHTBTC-EEEECSCGGG
T ss_pred             HHHHCCCEEEEECCCcchhhhhhcCceecCHHHHHhhCCEEEEcCCCChHHHHHhCHHHHhhCCCC-EEEECCCCcc
Confidence            89888873  22333221 22234666668899999999999944    56789999999999999 9999998764

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B

Probab=97.93  E-value=2.2e-05  Score=81.59  Aligned_cols=186  Identities=13%  Similarity=0.126  Sum_probs=112.6

Q ss_pred             CCcEEEEcC---C-CcccCCHHHHhccCC-CeEEEeccCCCcccChHhhcCCCcceeeeccceeeEecCCCCEEEEecCC
Q psy4626         132 TVDIVVTAT---G-NKNVVTREHMDKMKN-GCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIVLLAEG  206 (542)
Q Consensus       132 ~aDvVi~at---G-~~~lI~~e~l~~mk~-GailvnvG~g~~eid~~aL~~~~l~v~~~~~~v~~y~~~dg~~I~LLa~G  206 (542)
                      ++|+++..-   + ...-++++.|+.+++ -..+...|.|-+.+|++++.++++.+....                    
T Consensus        51 ~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~p--------------------  110 (348)
T 2w2k_A           51 DFEAIIKLAVENGTESYPWNADLISHLPSSLKVFAAAGAGFDWLDLDALNERGVAFANSR--------------------  110 (348)
T ss_dssp             CCSEEEECSTTTTGGGCCBCHHHHTTSCTTCCEEEESSSCCTTBCHHHHHHTTCEEECCT--------------------
T ss_pred             CeEEEEEcccccccccCCCCHHHHHhcccCceEEEECCccccccCHHHHHhCCcEEEECC--------------------
Confidence            789887631   1 233578889999974 788889999988899998875554443221                    


Q ss_pred             CcccccCCCChhHHHhhHH------HHHHHHHHHHhcCCCCC---CCCcc---ccCChhhHHHHHHhcCCcccc----cc
Q psy4626         207 RLVNLSCSSLPSFVVSITA------CTQALALIELFNAPSGR---YKSDV---YLLPKKMDEYVASLHLPTFDA----HL  270 (542)
Q Consensus       207 rLvnl~~~thp~~vmd~sf------a~q~la~~~L~~~~~~~---~~~gv---~~lp~~~d~~VA~l~L~~lg~----~i  270 (542)
                            .. +...+-+..+      +.++.......+.  ++   |...-   ...+.       ++..+++|+    .|
T Consensus       111 ------~~-~~~~vAe~~~~l~L~~~R~~~~~~~~~~~--g~~~~w~~~~~~~~~~~~-------~l~g~~vgIIG~G~I  174 (348)
T 2w2k_A          111 ------GA-GDTATSDLALYLILSVFRLASYSERAART--GDPETFNRVHLEIGKSAH-------NPRGHVLGAVGLGAI  174 (348)
T ss_dssp             ------TT-THHHHHHHHHHHHHHHHHTHHHHHHHHTT--CCHHHHHHHHHHHHTTCC-------CSTTCEEEEECCSHH
T ss_pred             ------CC-CcHHHHHHHHHHHHHHHhChHHHHHHHHc--CCCcccccccccccccCc-------CCCCCEEEEEEECHH
Confidence                  00 1111112222      2222111122222  34   42100   00000       234456665    88


Q ss_pred             ccccHHHHh-hcCCC--CCCCC--CCCccccCCeeee-ehhhhcccCcEEEEcc----CCCCccCHhHHhcCCCCcEEEc
Q psy4626         271 TELSDEQAK-YMGLN--KAGPF--KPSYYSMDGFSVV-KLNEVIRTVDIVVTAT----GNKNVVTREHMDKMKNGCVVCN  340 (542)
Q Consensus       271 ~~lt~~~a~-~lg~~--e~~p~--~a~ea~mdG~~v~-~~~~a~~~~d~~~t~t----g~~~vi~~~~~~~mk~gail~n  340 (542)
                      ++..+++++ .+|+.  -.||.  +.-.+.-.|.+.. +++++++.+|+|+.++    .++++|+.+.|+.||+|++|+|
T Consensus       175 G~~vA~~l~~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVil~vp~~~~t~~li~~~~l~~mk~gailin  254 (348)
T 2w2k_A          175 QKEIARKAVHGLGMKLVYYDVAPADAETEKALGAERVDSLEELARRSDCVSVSVPYMKLTHHLIDEAFFAAMKPGSRIVN  254 (348)
T ss_dssp             HHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHTCEECSSHHHHHHHCSEEEECCCCSGGGTTCBCHHHHHHSCTTEEEEE
T ss_pred             HHHHHHHHHHhcCCEEEEECCCCcchhhHhhcCcEEeCCHHHHhccCCEEEEeCCCChHHHHHhhHHHHhcCCCCCEEEE
Confidence            888889998 88873  22443  2222222366665 7899999999999954    3679999999999999999999


Q ss_pred             cCCCCccccccccc
Q psy4626         341 MGHSNTEIDVNSLR  354 (542)
Q Consensus       341 ~gh~~~Ei~~~~l~  354 (542)
                      ++++.. +|.++|.
T Consensus       255 ~srg~~-vd~~aL~  267 (348)
T 2w2k_A          255 TARGPV-ISQDALI  267 (348)
T ss_dssp             CSCGGG-BCHHHHH
T ss_pred             CCCCch-hCHHHHH
Confidence            999966 3334443

>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A

Probab=97.92  E-value=2.3e-05  Score=76.94  Aligned_cols=87  Identities=11%  Similarity=0.158  Sum_probs=68.9

Q ss_pred             cEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhc-CCcee-eCHHHHhcCCcEEEEcCCCcccCCHHHHhccC
Q psy4626          78 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACM-DGFSV-VKLNEVIRTVDIVVTATGNKNVVTREHMDKMK  155 (542)
Q Consensus        78 ktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~-~G~~v-~~l~e~l~~aDvVi~atG~~~lI~~e~l~~mk  155 (542)
                      .+|+|+|+|.+|..++..+...|.+|.++|+++.+...... .|..+ .+.+++++++|+||.|+. +..+ .+.+..++
T Consensus         4 m~i~iiG~G~mG~~~a~~l~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~D~Vi~~v~-~~~~-~~v~~~l~   81 (259)
T 2ahr_A            4 MKIGIIGVGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQLALPYAMSHQDLIDQVDLVILGIK-PQLF-ETVLKPLH   81 (259)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTSSCEEEEECSSHHHHHHHHHHHTCCBCSSHHHHHHTCSEEEECSC-GGGH-HHHHTTSC
T ss_pred             cEEEEECCCHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHHcCCEeeCCHHHHHhcCCEEEEEeC-cHhH-HHHHHHhc
Confidence            47999999999999999999999999999999887654432 36554 467788889999999986 3333 46777788


Q ss_pred             CCeEEEeccCC
Q psy4626         156 NGCVVCNMGHS  166 (542)
Q Consensus       156 ~GailvnvG~g  166 (542)
                      +|.++++...+
T Consensus        82 ~~~~vv~~~~~   92 (259)
T 2ahr_A           82 FKQPIISMAAG   92 (259)
T ss_dssp             CCSCEEECCTT
T ss_pred             cCCEEEEeCCC
Confidence            88888887544

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=97.92  E-value=9.5e-06  Score=79.99  Aligned_cols=92  Identities=12%  Similarity=0.143  Sum_probs=69.8

Q ss_pred             ccCcEEEEEcCChhHHHHHHHHHhCCCE-EEEEeCCchhhhhhhc-CCcee-eCHHHHhcCCcEEEEcCCCccc---CCH
Q psy4626          75 FGGKQVVLCGYGEVGKGCCQSLKGLGCV-IYITEIDPICALQACM-DGFSV-VKLNEVIRTVDIVVTATGNKNV---VTR  148 (542)
Q Consensus        75 l~GktVvViG~G~IG~~vA~~l~~~Ga~-Viv~d~dp~r~~~A~~-~G~~v-~~l~e~l~~aDvVi~atG~~~l---I~~  148 (542)
                      +.+.+|+|+|+|.+|..++..+...|.+ |.++|+++.+...... .|..+ .+++++++++|+||.|+....+   + .
T Consensus         8 ~~~m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Dvvi~av~~~~~~~v~-~   86 (266)
T 3d1l_A            8 IEDTPIVLIGAGNLATNLAKALYRKGFRIVQVYSRTEESARELAQKVEAEYTTDLAEVNPYAKLYIVSLKDSAFAELL-Q   86 (266)
T ss_dssp             GGGCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSHHHHHHHHHHTTCEEESCGGGSCSCCSEEEECCCHHHHHHHH-H
T ss_pred             CCCCeEEEEcCCHHHHHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHcCCceeCCHHHHhcCCCEEEEecCHHHHHHHH-H
Confidence            3456899999999999999999988997 9999999887654433 36654 4677788899999999865422   2 1


Q ss_pred             HHHhccCCCeEEEeccCCC
Q psy4626         149 EHMDKMKNGCVVCNMGHSN  167 (542)
Q Consensus       149 e~l~~mk~GailvnvG~g~  167 (542)
                      +....++++.++++++.+.
T Consensus        87 ~l~~~~~~~~ivv~~s~~~  105 (266)
T 3d1l_A           87 GIVEGKREEALMVHTAGSI  105 (266)
T ss_dssp             HHHTTCCTTCEEEECCTTS
T ss_pred             HHHhhcCCCcEEEECCCCC
Confidence            2334567899999888763

>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}

Probab=97.92  E-value=1.9e-05  Score=78.65  Aligned_cols=88  Identities=16%  Similarity=0.146  Sum_probs=68.7

Q ss_pred             cEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCcee-eCHHHHhcCCcEEEEcCCCcccCCHHHH-----
Q psy4626          78 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV-VKLNEVIRTVDIVVTATGNKNVVTREHM-----  151 (542)
Q Consensus        78 ktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v-~~l~e~l~~aDvVi~atG~~~lI~~e~l-----  151 (542)
                      .+|+|+|+|.+|..++..|...|.+|+++| ++.+.......|... .++++++..+|+||.|+.....+. +.+     
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~D~vi~~vp~~~~~~-~v~~~~~~   81 (295)
T 1yb4_A            4 MKLGFIGLGIMGSPMAINLARAGHQLHVTT-IGPVADELLSLGAVNVETARQVTEFADIIFIMVPDTPQVE-DVLFGEHG   81 (295)
T ss_dssp             CEEEECCCSTTHHHHHHHHHHTTCEEEECC-SSCCCHHHHTTTCBCCSSHHHHHHTCSEEEECCSSHHHHH-HHHHSTTS
T ss_pred             CEEEEEccCHHHHHHHHHHHhCCCEEEEEc-CHHHHHHHHHcCCcccCCHHHHHhcCCEEEEECCCHHHHH-HHHhCchh
Confidence            479999999999999999999999999999 887765554556553 467788889999999986543222 233     


Q ss_pred             --hccCCCeEEEeccCCC
Q psy4626         152 --DKMKNGCVVCNMGHSN  167 (542)
Q Consensus       152 --~~mk~GailvnvG~g~  167 (542)
                        +.+++|.++++++.+.
T Consensus        82 l~~~l~~~~~vv~~s~~~   99 (295)
T 1yb4_A           82 CAKTSLQGKTIVDMSSIS   99 (295)
T ss_dssp             STTSCCTTEEEEECSCCC
T ss_pred             HhhcCCCCCEEEECCCCC
Confidence              3578899999988764

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A

Probab=97.90  E-value=1.6e-05  Score=79.36  Aligned_cols=89  Identities=16%  Similarity=0.207  Sum_probs=68.2

Q ss_pred             cEEEEEcCChhHHHHHHHHHhC--CCEEEEEeCCchhhhhhhcCCce---eeCHHHHhcCCcEEEEcCCCcc---cCCHH
Q psy4626          78 KQVVLCGYGEVGKGCCQSLKGL--GCVIYITEIDPICALQACMDGFS---VVKLNEVIRTVDIVVTATGNKN---VVTRE  149 (542)
Q Consensus        78 ktVvViG~G~IG~~vA~~l~~~--Ga~Viv~d~dp~r~~~A~~~G~~---v~~l~e~l~~aDvVi~atG~~~---lI~~e  149 (542)
                      ++|+|||+|.+|..+|..+...  |.+|+++|+++.+...+...|..   ..+++++++.+|+||.|+....   ++ .+
T Consensus         7 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~aDvVilavp~~~~~~v~-~~   85 (290)
T 3b1f_A            7 KTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSDRSRDIALERGIVDEATADFKVFAALADVIILAVPIKKTIDFI-KI   85 (290)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSHHHHHHHHHTTSCSEEESCTTTTGGGCSEEEECSCHHHHHHHH-HH
T ss_pred             ceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHHcCCcccccCCHHHhhcCCCEEEEcCCHHHHHHHH-HH
Confidence            5899999999999999999876  67999999998877655556652   3466778889999999986432   22 23


Q ss_pred             HHhc-cCCCeEEEeccCCC
Q psy4626         150 HMDK-MKNGCVVCNMGHSN  167 (542)
Q Consensus       150 ~l~~-mk~GailvnvG~g~  167 (542)
                      .... ++++.++++++...
T Consensus        86 l~~~~l~~~~ivi~~~~~~  104 (290)
T 3b1f_A           86 LADLDLKEDVIITDAGSTK  104 (290)
T ss_dssp             HHTSCCCTTCEEECCCSCH
T ss_pred             HHhcCCCCCCEEEECCCCc
Confidence            3445 78899999887653

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=97.90  E-value=3e-05  Score=65.73  Aligned_cols=87  Identities=15%  Similarity=0.120  Sum_probs=61.6

Q ss_pred             cCcEEEEEcCChhHHHHHHHHHhCC-CEEEEEeCCchhhhhhhcCCceee--C------HHHHhcCCcEEEEcCCCcccC
Q psy4626          76 GGKQVVLCGYGEVGKGCCQSLKGLG-CVIYITEIDPICALQACMDGFSVV--K------LNEVIRTVDIVVTATGNKNVV  146 (542)
Q Consensus        76 ~GktVvViG~G~IG~~vA~~l~~~G-a~Viv~d~dp~r~~~A~~~G~~v~--~------l~e~l~~aDvVi~atG~~~lI  146 (542)
                      .+++|+|+|+|.+|+.+++.|...| .+|+++++++.+.......+....  +      +.+++.++|+||.+++...  
T Consensus         4 ~~~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~vi~~~~~~~--   81 (118)
T 3ic5_A            4 MRWNICVVGAGKIGQMIAALLKTSSNYSVTVADHDLAALAVLNRMGVATKQVDAKDEAGLAKALGGFDAVISAAPFFL--   81 (118)
T ss_dssp             TCEEEEEECCSHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHHTTTCEEEECCTTCHHHHHHHTTTCSEEEECSCGGG--
T ss_pred             CcCeEEEECCCHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhCCCcEEEecCCCHHHHHHHHcCCCEEEECCCchh--
Confidence            4689999999999999999999999 799999999987765544554422  1      3355689999999986432  


Q ss_pred             CHHHHhc-cCCCeEEEecc
Q psy4626         147 TREHMDK-MKNGCVVCNMG  164 (542)
Q Consensus       147 ~~e~l~~-mk~GailvnvG  164 (542)
                      ....+.. .+.|...+..+
T Consensus        82 ~~~~~~~~~~~g~~~~~~~  100 (118)
T 3ic5_A           82 TPIIAKAAKAAGAHYFDLT  100 (118)
T ss_dssp             HHHHHHHHHHTTCEEECCC
T ss_pred             hHHHHHHHHHhCCCEEEec
Confidence            1222222 34555555544

>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A*

Probab=97.89  E-value=1.9e-05  Score=81.34  Aligned_cols=103  Identities=18%  Similarity=0.243  Sum_probs=77.4

Q ss_pred             HHHHHHHHhhcCccccC--cEEEEEcC-ChhHHHHHHHHHhCCC-EEEEEeCCchhhhhhhc-CCce-eeCH-----HHH
Q psy4626          61 ESIIDSLKRSTDVMFGG--KQVVLCGY-GEVGKGCCQSLKGLGC-VIYITEIDPICALQACM-DGFS-VVKL-----NEV  129 (542)
Q Consensus        61 ~s~~~ai~r~~~~~l~G--ktVvViG~-G~IG~~vA~~l~~~Ga-~Viv~d~dp~r~~~A~~-~G~~-v~~l-----~e~  129 (542)
                      ...|+++.+..+ ...|  ++|+|+|. |.||+.+++.++..|+ +|+++++++.+...+.. .|.+ +++.     .+.
T Consensus       144 ~ta~~al~~~~~-~~~g~~~~vlI~GasggiG~~~~~~a~~~Ga~~Vi~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~  222 (357)
T 2zb4_A          144 LTSLIGIQEKGH-ITAGSNKTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTHEKCILLTSELGFDAAINYKKDNVAEQ  222 (357)
T ss_dssp             HHHHHHHHHHSC-CCTTSCCEEEESSTTBHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSCCSEEEETTTSCHHHH
T ss_pred             HHHHHHHHHhcC-CCCCCccEEEEECCCcHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCCceEEecCchHHHHH
Confidence            345666643322 3578  99999998 9999999999999999 99999998877766654 6754 2321     122


Q ss_pred             h-----cCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCC
Q psy4626         130 I-----RTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHS  166 (542)
Q Consensus       130 l-----~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g  166 (542)
                      +     .+.|++|+++|. ..+ .+.++.+++++.++.+|..
T Consensus       223 ~~~~~~~~~d~vi~~~G~-~~~-~~~~~~l~~~G~iv~~G~~  262 (357)
T 2zb4_A          223 LRESCPAGVDVYFDNVGG-NIS-DTVISQMNENSHIILCGQI  262 (357)
T ss_dssp             HHHHCTTCEEEEEESCCH-HHH-HHHHHTEEEEEEEEECCCG
T ss_pred             HHHhcCCCCCEEEECCCH-HHH-HHHHHHhccCcEEEEECCc
Confidence            2     258999999986 344 4789999999999999864

>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus}

Probab=97.11  E-value=1.7e-06  Score=82.91  Aligned_cols=90  Identities=17%  Similarity=0.204  Sum_probs=67.4

Q ss_pred             ccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCCcEEEEcCCCcccCCHHH--Hh
Q psy4626          75 FGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREH--MD  152 (542)
Q Consensus        75 l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~aDvVi~atG~~~lI~~e~--l~  152 (542)
                      ..+++++|+|+|.+|..++..|...|.+|+++++++. .......|....+..++++.+|+||.++.... +. +.  +.
T Consensus        17 ~~~~~I~iIG~G~mG~~la~~L~~~G~~V~~~~r~~~-~~~~~~~g~~~~~~~~~~~~aDvVilav~~~~-~~-~v~~l~   93 (201)
T 2yjz_A           17 EKQGVVCIFGTGDFGKSLGLKMLQCGYSVVFGSRNPQ-VSSLLPRGAEVLCYSEAASRSDVIVLAVHREH-YD-FLAELA   93 (201)
Confidence            4677999999999999999999999999999998876 32223345555567778889999999875432 21 22  33


Q ss_pred             ccCCCeEEEeccCCC
Q psy4626         153 KMKNGCVVCNMGHSN  167 (542)
Q Consensus       153 ~mk~GailvnvG~g~  167 (542)
                      .++++.++++++.+.
T Consensus        94 ~~~~~~ivI~~~~G~  108 (201)
T 2yjz_A           94 DSLKGRVLIDVSNNQ  108 (201)
Confidence            456788999988774

>3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE NDP; 1.70A {Ralstonia eutropha}

Probab=97.86  E-value=9e-06  Score=84.81  Aligned_cols=99  Identities=14%  Similarity=0.085  Sum_probs=73.7

Q ss_pred             HHHHHHhhcCccccCcEEEEE--cCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce-eeC-----HHHHh----
Q psy4626          63 IIDSLKRSTDVMFGGKQVVLC--GYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVK-----LNEVI----  130 (542)
Q Consensus        63 ~~~ai~r~~~~~l~GktVvVi--G~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~-v~~-----l~e~l----  130 (542)
                      .|+++.+..   .+|++|+|+  |.|.+|+.+++.++.+|++|++++.++.+...+...|++ +++     ..+.+    
T Consensus       160 a~~~~~~~~---~~g~~vlV~gag~G~vG~~a~q~a~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~~~~~~~~~~~~v~~~t  236 (379)
T 3iup_A          160 ALGMVETMR---LEGHSALVHTAAASNLGQMLNQICLKDGIKLVNIVRKQEQADLLKAQGAVHVCNAASPTFMQDLTEAL  236 (379)
T ss_dssp             HHHHHHHHH---HTTCSCEEESSTTSHHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHTTCSCEEETTSTTHHHHHHHHH
T ss_pred             HHHHHHHhc---cCCCEEEEECCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHhCCCcEEEeCCChHHHHHHHHHh
Confidence            345554442   579999999  899999999999999999999999999998888888876 332     22222    


Q ss_pred             --cCCcEEEEcCCCcccCCHHHHhcc-----CCCeEEEeccC
Q psy4626         131 --RTVDIVVTATGNKNVVTREHMDKM-----KNGCVVCNMGH  165 (542)
Q Consensus       131 --~~aDvVi~atG~~~lI~~e~l~~m-----k~GailvnvG~  165 (542)
                        .++|++++|+|....+. ..++.+     ++++.++.+|.
T Consensus       237 ~~~g~d~v~d~~g~~~~~~-~~~~~l~~~~~r~~G~~~~~G~  277 (379)
T 3iup_A          237 VSTGATIAFDATGGGKLGG-QILTCMEAALNKSAREYSRYGS  277 (379)
T ss_dssp             HHHCCCEEEESCEEESHHH-HHHHHHHHHHHTTCCSCCTTCC
T ss_pred             cCCCceEEEECCCchhhHH-HHHHhcchhhhccccceeeccc
Confidence              37999999999766653 556665     56666655553

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=97.86  E-value=1e-05  Score=83.97  Aligned_cols=90  Identities=14%  Similarity=0.212  Sum_probs=70.1

Q ss_pred             CcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCcee-eCHHHHhc----CCcEEEEcCCCcccCCH--H
Q psy4626          77 GKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV-VKLNEVIR----TVDIVVTATGNKNVVTR--E  149 (542)
Q Consensus        77 GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v-~~l~e~l~----~aDvVi~atG~~~lI~~--e  149 (542)
                      -++|+|||+|.||..+|+.|+..|.+|+++|+++.+...+...|+.. .+++++++    ++|+||.|+... .+..  +
T Consensus         8 ~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~~~~a~~~G~~~~~~~~e~~~~a~~~aDlVilavP~~-~~~~vl~   86 (341)
T 3ktd_A            8 SRPVCILGLGLIGGSLLRDLHAANHSVFGYNRSRSGAKSAVDEGFDVSADLEATLQRAAAEDALIVLAVPMT-AIDSLLD   86 (341)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHTTCCEESCHHHHHHHHHHTTCEEEECSCHH-HHHHHHH
T ss_pred             CCEEEEEeecHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeeeCCHHHHHHhcccCCCEEEEeCCHH-HHHHHHH
Confidence            45799999999999999999999999999999998877777788754 45666654    579999997632 2210  2


Q ss_pred             HHhccCCCeEEEeccCCC
Q psy4626         150 HMDKMKNGCVVCNMGHSN  167 (542)
Q Consensus       150 ~l~~mk~GailvnvG~g~  167 (542)
                      .+..++++++++++|...
T Consensus        87 ~l~~~~~~~iv~Dv~Svk  104 (341)
T 3ktd_A           87 AVHTHAPNNGFTDVVSVK  104 (341)
T ss_dssp             HHHHHCTTCCEEECCSCS
T ss_pred             HHHccCCCCEEEEcCCCC
Confidence            344458999999998754

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=97.84  E-value=3e-05  Score=69.29  Aligned_cols=88  Identities=13%  Similarity=0.089  Sum_probs=63.5

Q ss_pred             CcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeC-----H---HHH-hcCCcEEEEcCCCcccC-
Q psy4626          77 GKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVK-----L---NEV-IRTVDIVVTATGNKNVV-  146 (542)
Q Consensus        77 GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~-----l---~e~-l~~aDvVi~atG~~~lI-  146 (542)
                      .++++|+|+|.+|+.+|+.|+..|.+|+++|.||.+...+...|+.++.     .   .++ +.++|++|.++++...- 
T Consensus         7 ~~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~~~~~g~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~~~~n~   86 (140)
T 3fwz_A            7 CNHALLVGYGRVGSLLGEKLLASDIPLVVIETSRTRVDELRERGVRAVLGNAANEEIMQLAHLECAKWLILTIPNGYEAG   86 (140)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTTCEEEESCTTSHHHHHHTTGGGCSEEEECCSCHHHHH
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHcCCCEEECCCCCHHHHHhcCcccCCEEEEECCChHHHH
Confidence            4579999999999999999999999999999999988777777876432     1   121 46899999998754211 


Q ss_pred             -CHHHHhccCCCeEEEecc
Q psy4626         147 -TREHMDKMKNGCVVCNMG  164 (542)
Q Consensus       147 -~~e~l~~mk~GailvnvG  164 (542)
                       -...+..+.+...++-..
T Consensus        87 ~~~~~a~~~~~~~~iiar~  105 (140)
T 3fwz_A           87 EIVASARAKNPDIEIIARA  105 (140)
T ss_dssp             HHHHHHHHHCSSSEEEEEE
T ss_pred             HHHHHHHHHCCCCeEEEEE
Confidence             012344555555555433

>2qrj_A Saccharopine dehydrogenase, NAD+, L-lysine- forming; sulfate, rossmann fold, alpha-aminoadipate pathway, fungal lysine biosynthesis; 1.60A {Saccharomyces cerevisiae} PDB: 2qrk_A* 2qrl_A* 2q99_A 3ugk_A 3uh1_A* 3uha_A*

Probab=97.81  E-value=3.1e-05  Score=81.65  Aligned_cols=80  Identities=19%  Similarity=0.250  Sum_probs=65.8

Q ss_pred             cCcEEEEEcC-ChhHHHHHHHHHhCCC---EEEEEeCCchhhhhhhcCCceeeCHHHHhcCCcEEEEcCC----CcccCC
Q psy4626          76 GGKQVVLCGY-GEVGKGCCQSLKGLGC---VIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATG----NKNVVT  147 (542)
Q Consensus        76 ~GktVvViG~-G~IG~~vA~~l~~~Ga---~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~aDvVi~atG----~~~lI~  147 (542)
                      ...+|+|+|+ |.+|++.++.|+++|+   .|.++|+++...      |...    +.+..+|+||.|.-    .+.+|+
T Consensus       213 ~~~kV~ViG~~G~vG~~A~~~a~~lGa~~~~V~v~D~~~~~~------g~~~----~~i~~aDivIn~vlig~~aP~Lvt  282 (394)
T 2qrj_A          213 RKPTVLIIGALGRCGSGAIDLLHKVGIPDANILKWDIKETSR------GGPF----DEIPQADIFINCIYLSKPIAPFTN  282 (394)
T ss_dssp             CCCCEEEETTTSHHHHHHHHHHHHTTCCGGGEEEECHHHHTT------CSCC----THHHHSSEEEECCCCCSSCCCSCC
T ss_pred             CCCeEEEEcCCCHHHHHHHHHHHhCCCCcCceEEeecccccc------CCch----hhHhhCCEEEECcCcCCCCCcccC
Confidence            4678999999 9999999999999998   899999766211      2221    34568999999762    578899


Q ss_pred             HHHHhcc-CCCeEEEeccC
Q psy4626         148 REHMDKM-KNGCVVCNMGH  165 (542)
Q Consensus       148 ~e~l~~m-k~GailvnvG~  165 (542)
                      ++.++.| |+|++|+.++-
T Consensus       283 ~e~v~~m~k~gsVIVDVA~  301 (394)
T 2qrj_A          283 MEKLNNPNRRLRTVVDVSA  301 (394)
T ss_dssp             HHHHCCTTCCCCEEEETTC
T ss_pred             HHHHhcCcCCCeEEEEEec
Confidence            9999999 99999999873

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=97.80  E-value=3.3e-05  Score=68.56  Aligned_cols=67  Identities=16%  Similarity=0.235  Sum_probs=53.4

Q ss_pred             cCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceee--C---HH---HH-hcCCcEEEEcCCC
Q psy4626          76 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVV--K---LN---EV-IRTVDIVVTATGN  142 (542)
Q Consensus        76 ~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~--~---l~---e~-l~~aDvVi~atG~  142 (542)
                      .+++++|+|+|.+|+.+++.|...|.+|+++|.++.+...+...|+.+.  +   .+   ++ +.++|+||.++++
T Consensus         5 ~~~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~~d~vi~~~~~   80 (141)
T 3llv_A            5 GRYEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSKEKIELLEDEGFDAVIADPTDESFYRSLDLEGVSAVLITGSD   80 (141)
T ss_dssp             -CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTTCEEEECCTTCHHHHHHSCCTTCSEEEECCSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCcEEECCCCCHHHHHhCCcccCCEEEEecCC
Confidence            3578999999999999999999999999999999988776666676543  1   11   11 3689999999874

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=97.79  E-value=4.5e-05  Score=66.91  Aligned_cols=69  Identities=22%  Similarity=0.319  Sum_probs=52.7

Q ss_pred             ccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceee-----CHH---HH-hcCCcEEEEcCCCc
Q psy4626          75 FGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVV-----KLN---EV-IRTVDIVVTATGNK  143 (542)
Q Consensus        75 l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~-----~l~---e~-l~~aDvVi~atG~~  143 (542)
                      +.+++++|+|+|.+|+.+++.|+..|.+|+++|+++.+...+...|..+.     +.+   ++ +.++|+||.+++..
T Consensus         4 ~~~~~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~~~~   81 (144)
T 2hmt_A            4 IKNKQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYASYATHAVIANATEENELLSLGIRNFEYVIVAIGAN   81 (144)
T ss_dssp             --CCSEEEECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHTTTTTCSEEEECCTTCHHHHHTTTGGGCSEEEECCCSC
T ss_pred             CcCCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhCCEEEEeCCCCHHHHHhcCCCCCCEEEECCCCc
Confidence            45778999999999999999999999999999999877655544555432     222   22 56899999998863

>2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens}

Probab=97.78  E-value=5.7e-05  Score=76.99  Aligned_cols=89  Identities=13%  Similarity=0.114  Sum_probs=68.9

Q ss_pred             ccCcEEEEEcCChhHHHHHHHHHhC-CC-EEEEEeCCchhhhhh-hcCC--ce-eeCHHHHhcCCcEEEEcCCC-cccCC
Q psy4626          75 FGGKQVVLCGYGEVGKGCCQSLKGL-GC-VIYITEIDPICALQA-CMDG--FS-VVKLNEVIRTVDIVVTATGN-KNVVT  147 (542)
Q Consensus        75 l~GktVvViG~G~IG~~vA~~l~~~-Ga-~Viv~d~dp~r~~~A-~~~G--~~-v~~l~e~l~~aDvVi~atG~-~~lI~  147 (542)
                      ..+++++|||+|.+|+.+++.+... |. +|.++|+++.+.... ...+  +. ..+++++++++|+|++|+.. ..++.
T Consensus       133 ~~~~~igiIG~G~~g~~~a~~l~~~~g~~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~e~v~~aDiVi~atp~~~~v~~  212 (312)
T 2i99_A          133 PSSEVLCILGAGVQAYSHYEIFTEQFSFKEVRIWNRTKENAEKFADTVQGEVRVCSSVQEAVAGADVIITVTLATEPILF  212 (312)
T ss_dssp             TTCCEEEEECCSHHHHHHHHHHHHHCCCSEEEEECSSHHHHHHHHHHSSSCCEECSSHHHHHTTCSEEEECCCCSSCCBC
T ss_pred             CCCcEEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHhhCCeEEeCCHHHHHhcCCEEEEEeCCCCcccC
Confidence            3578999999999999999988654 87 999999999876543 2334  44 34678889999999998753 33443


Q ss_pred             HHHHhccCCCeEEEeccCC
Q psy4626         148 REHMDKMKNGCVVCNMGHS  166 (542)
Q Consensus       148 ~e~l~~mk~GailvnvG~g  166 (542)
                      .   +.+++|..++++|..
T Consensus       213 ~---~~l~~g~~vi~~g~~  228 (312)
T 2i99_A          213 G---EWVKPGAHINAVGAS  228 (312)
T ss_dssp             G---GGSCTTCEEEECCCC
T ss_pred             H---HHcCCCcEEEeCCCC
Confidence            2   578999999998866

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=97.78  E-value=0.00015  Score=74.63  Aligned_cols=187  Identities=16%  Similarity=0.225  Sum_probs=112.2

Q ss_pred             HHhcCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCCCcccChHhhcCCCcceeeeccceeeEecCCCCEEEEecCCC
Q psy4626         128 EVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIVLLAEGR  207 (542)
Q Consensus       128 e~l~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g~~eid~~aL~~~~l~v~~~~~~v~~y~~~dg~~I~LLa~Gr  207 (542)
                      +.++++|+++....+  -++++.++.+++-..+...|.|-+.+|++++..+++.+....                     
T Consensus        41 ~~~~~~d~~~~~~~~--~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gi~v~n~~---------------------   97 (334)
T 2dbq_A           41 KKVKEVDALVTMLSE--RIDKEVFENAPKLRIVANYAVGYDNIDIEEATKRGIYVTNTP---------------------   97 (334)
T ss_dssp             HHTTSCSEEEECTTS--CBCHHHHHTCTTCCEEEESSSCCTTBCHHHHHHTTCEEECCC---------------------
T ss_pred             HHhcCcEEEEEcCCC--CCCHHHHhhCCCceEEEECCcccccccHHHHHhCCCEEEeCC---------------------
Confidence            446889999875322  367788999999889999999988899988875544433221                     


Q ss_pred             cccccCCCChhHHHh------hHHHHHHHHHHHHhcCCCCCCC-------CccccCChhhHHHHHHhcCCcccc----cc
Q psy4626         208 LVNLSCSSLPSFVVS------ITACTQALALIELFNAPSGRYK-------SDVYLLPKKMDEYVASLHLPTFDA----HL  270 (542)
Q Consensus       208 Lvnl~~~thp~~vmd------~sfa~q~la~~~L~~~~~~~~~-------~gv~~lp~~~d~~VA~l~L~~lg~----~i  270 (542)
                           .. +...+-+      ++++.++.......+.  +.|.       +. .....       ++...++|+    .+
T Consensus        98 -----~~-~~~~vAE~~~~~~L~~~R~~~~~~~~~~~--~~w~~~~~~~~~~-~~~~~-------~l~g~~vgIIG~G~i  161 (334)
T 2dbq_A           98 -----DV-LTDATADLAFALLLATARHVVKGDRFVRS--GEWKKRGVAWHPK-WFLGY-------DVYGKTIGIIGLGRI  161 (334)
T ss_dssp             -----ST-THHHHHHHHHHHHHHHHHTHHHHHHHHHT--SHHHHTTCCCCTT-TTCCC-------CCTTCEEEEECCSHH
T ss_pred             -----Cc-CHHHHHHHHHHHHHHHHhCHHHHHHHHHc--CCCcccccccccc-ccccc-------CCCCCEEEEEccCHH
Confidence                 00 1111111      1122222111111221  2342       10 00000       123334444    77


Q ss_pred             ccccHHHHhhcCCC--CCCCCCCCc-cccCCeeeeehhhhcccCcEEEEccC----CCCccCHhHHhcCCCCcEEEccCC
Q psy4626         271 TELSDEQAKYMGLN--KAGPFKPSY-YSMDGFSVVKLNEVIRTVDIVVTATG----NKNVVTREHMDKMKNGCVVCNMGH  343 (542)
Q Consensus       271 ~~lt~~~a~~lg~~--e~~p~~a~e-a~mdG~~v~~~~~a~~~~d~~~t~tg----~~~vi~~~~~~~mk~gail~n~gh  343 (542)
                      ++..+.+++.+|+.  -.||...-+ +.-.|.+..+++++++.+|+|+.++.    ++++|+.+.++.||+|++++|+++
T Consensus       162 G~~iA~~l~~~G~~V~~~d~~~~~~~~~~~g~~~~~l~~~l~~aDvVil~vp~~~~t~~~i~~~~~~~mk~~ailIn~sr  241 (334)
T 2dbq_A          162 GQAIAKRAKGFNMRILYYSRTRKEEVERELNAEFKPLEDLLRESDFVVLAVPLTRETYHLINEERLKLMKKTAILINIAR  241 (334)
T ss_dssp             HHHHHHHHHHTTCEEEEECSSCCHHHHHHHCCEECCHHHHHHHCSEEEECCCCCTTTTTCBCHHHHHHSCTTCEEEECSC
T ss_pred             HHHHHHHHHhCCCEEEEECCCcchhhHhhcCcccCCHHHHHhhCCEEEECCCCChHHHHhhCHHHHhcCCCCcEEEECCC
Confidence            78888888888873  223322212 22236666688999999999999443    568999999999999999999998


Q ss_pred             CCccccccccc
Q psy4626         344 SNTEIDVNSLR  354 (542)
Q Consensus       344 ~~~Ei~~~~l~  354 (542)
                      +.. +|-.+|.
T Consensus       242 g~~-v~~~aL~  251 (334)
T 2dbq_A          242 GKV-VDTNALV  251 (334)
T ss_dssp             GGG-BCHHHHH
T ss_pred             Ccc-cCHHHHH
Confidence            765 4433343

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=97.77  E-value=6.3e-05  Score=75.16  Aligned_cols=102  Identities=19%  Similarity=0.202  Sum_probs=67.7

Q ss_pred             HHHHHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhh-cC----CceeeCHHHHhc-CCc
Q psy4626          61 ESIIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQAC-MD----GFSVVKLNEVIR-TVD  134 (542)
Q Consensus        61 ~s~~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~-~~----G~~v~~l~e~l~-~aD  134 (542)
                      .+++.++.+. +..+.|++++|+|.|.+|+.++..|...|.+|+++++++.++.... ..    .....+++++.. ++|
T Consensus       104 ~G~~~~L~~~-~~~~~~~~vlvlGaGg~g~a~a~~L~~~G~~v~v~~R~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~D  182 (272)
T 1p77_A          104 IGLVTDLQRL-NWLRPNQHVLILGAGGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPYGNIQAVSMDSIPLQTYD  182 (272)
T ss_dssp             HHHHHHHHHT-TCCCTTCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGSCEEEEEGGGCCCSCCS
T ss_pred             HHHHHHHHHh-CCCcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHccccCCeEEeeHHHhccCCCC
Confidence            4455555543 3467899999999999999999999999999999999987654321 11    123344444334 899


Q ss_pred             EEEEcCCCccc-----CCHHHHhccCCCeEEEeccCC
Q psy4626         135 IVVTATGNKNV-----VTREHMDKMKNGCVVCNMGHS  166 (542)
Q Consensus       135 vVi~atG~~~l-----I~~e~l~~mk~GailvnvG~g  166 (542)
                      +||.+++....     +..   +.++++.+++++...
T Consensus       183 ivIn~t~~~~~~~~~~i~~---~~l~~~~~v~D~~y~  216 (272)
T 1p77_A          183 LVINATSAGLSGGTASVDA---EILKLGSAFYDMQYA  216 (272)
T ss_dssp             EEEECCCC-------CCCH---HHHHHCSCEEESCCC
T ss_pred             EEEECCCCCCCCCCCCCCH---HHcCCCCEEEEeeCC
Confidence            99999875321     221   223556666666654

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=97.76  E-value=0.00018  Score=76.06  Aligned_cols=221  Identities=17%  Similarity=0.183  Sum_probs=114.7

Q ss_pred             HHHHHHHhCCCEEEEEeCCchh-----hhhhhcCCceeeCHHHHhcCCcEEEEcCCCcccCCHHHHhccCCCeEEEec-c
Q psy4626          91 GCCQSLKGLGCVIYITEIDPIC-----ALQACMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNM-G  164 (542)
Q Consensus        91 ~vA~~l~~~Ga~Viv~d~dp~r-----~~~A~~~G~~v~~l~e~l~~aDvVi~atG~~~lI~~e~l~~mk~Gailvnv-G  164 (542)
                      ..++.|...|.+|.|- .++..     -.+....|+.+++-+++++ +|+|+.. ..+   ..+.++.++++..++.. +
T Consensus        28 ~~v~~L~~~G~~V~ve-~~ag~~~gf~d~~y~~aGa~i~~~~~~~~-adiil~v-k~p---~~~~i~~l~~~~~li~~~~  101 (401)
T 1x13_A           28 KTVEQLLKLGFTVAVE-SGAGQLASFDDKAFVQAGAEIVEGNSVWQ-SEIILKV-NAP---LDDEIALLNPGTTLVSFIW  101 (401)
T ss_dssp             HHHHHHHHTTCEEEEE-TTTTGGGTCCHHHHHHHTCEEECGGGGGS-SSEEECS-SCC---CHHHHTTCCTTCEEEECCC
T ss_pred             HHHHHHHHCCCEEEEE-ECCCcccCCChHHHHHCCCEEeccHHHhc-CCeEEEe-CCC---CHHHHHHhcCCCcEEEEec
Confidence            3456677788887653 22211     1112234666655444555 9998743 222   35788999888877743 3


Q ss_pred             CCCcccChHhhcCCCcceeeeccceeeEecCCCCEEEEecCCCcccccCCCChhHHHhhHHHHHHHHHHHHhcCCCCCCC
Q psy4626         165 HSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIVLLAEGRLVNLSCSSLPSFVVSITACTQALALIELFNAPSGRYK  244 (542)
Q Consensus       165 ~g~~eid~~aL~~~~l~v~~~~~~v~~y~~~dg~~I~LLa~GrLvnl~~~thp~~vmd~sfa~q~la~~~L~~~~~~~~~  244 (542)
                      .+.+.++++++.++++.+.... .+.+          +-..++++-+.    ++-...  ....++...+.+    +++.
T Consensus       102 ~~~d~~~~~al~~~gI~v~~~e-~v~~----------~~~a~~l~~l~----~~a~~a--g~~av~~~~~~~----~~~~  160 (401)
T 1x13_A          102 PAQNPELMQKLAERNVTVMAMD-SVPR----------ISRAQSLDALS----SMANIA--GYRAIVEAAHEF----GRFF  160 (401)
T ss_dssp             GGGCHHHHHHHHHTTCEEEEGG-GCCC----------SGGGGGGCHHH----HHHHHH--HHHHHHHHHHHC----SSCS
T ss_pred             CCCCHHHHHHHHHCCCEEEEee-hhhh----------hhhhcccchHH----HHHHHH--HHHHHHHHHHhc----cccc
Confidence            3446777888876665543211 0000          00001111111    111111  111122222222    2222


Q ss_pred             CccccCChhhHHHHHHhcCCcccc-ccccccHHHHhhcCCC----CCCCCCCCccccCCeeee-----------------
Q psy4626         245 SDVYLLPKKMDEYVASLHLPTFDA-HLTELSDEQAKYMGLN----KAGPFKPSYYSMDGFSVV-----------------  302 (542)
Q Consensus       245 ~gv~~lp~~~d~~VA~l~L~~lg~-~i~~lt~~~a~~lg~~----e~~p~~a~ea~mdG~~v~-----------------  302 (542)
                      .+...+-.    .+...+.-.+|. .++....+.++.+|+.    +.+|.+.-++.--|.+..                 
T Consensus       161 ~~~~~~~g----~l~g~~V~ViGaG~iG~~aa~~a~~~Ga~V~v~D~~~~~~~~~~~lGa~~~~~~~~~~~~~~~g~~~~  236 (401)
T 1x13_A          161 TGQITAAG----KVPPAKVMVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLELDFKEEAGSGDGYAKV  236 (401)
T ss_dssp             SCEEETTE----EECCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCGGGHHHHHHTTCEECCC--------CCHHHHH
T ss_pred             CCceeecc----CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCCEEEEecccccccccccchhh
Confidence            22111000    000001222333 7777778888888883    334544322222244322                 


Q ss_pred             -----------ehhhhcccCcEEEEccCC-----CCccCHhHHhcCCCCcEEEccC
Q psy4626         303 -----------KLNEVIRTVDIVVTATGN-----KNVVTREHMDKMKNGCVVCNMG  342 (542)
Q Consensus       303 -----------~~~~a~~~~d~~~t~tg~-----~~vi~~~~~~~mk~gail~n~g  342 (542)
                                 .++++++.+||||++++.     +.+|+.+.++.||+|++++|.|
T Consensus       237 ~~~~~~~~~~~~l~e~~~~aDvVI~~~~~pg~~ap~li~~~~l~~mk~g~vIVdva  292 (401)
T 1x13_A          237 MSDAFIKAEMELFAAQAKEVDIIVTTALIPGKPAPKLITREMVDSMKAGSVIVDLA  292 (401)
T ss_dssp             HSHHHHHHHHHHHHHHHHHCSEEEECCCCTTSCCCCCBCHHHHHTSCTTCEEEETT
T ss_pred             ccHHHHHHHHHHHHHHhCCCCEEEECCccCCCCCCeeeCHHHHhcCCCCcEEEEEc
Confidence                       367888999999998643     4789999999999999999999

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=97.75  E-value=3.2e-05  Score=75.70  Aligned_cols=88  Identities=18%  Similarity=0.312  Sum_probs=65.3

Q ss_pred             cEEEEEcCChhHHHHHHHHHhCCC----EEEEEeCCchhhhhhh-cCCcee-eCHHHHhcCCcEEEEcCCCcccCC---H
Q psy4626          78 KQVVLCGYGEVGKGCCQSLKGLGC----VIYITEIDPICALQAC-MDGFSV-VKLNEVIRTVDIVVTATGNKNVVT---R  148 (542)
Q Consensus        78 ktVvViG~G~IG~~vA~~l~~~Ga----~Viv~d~dp~r~~~A~-~~G~~v-~~l~e~l~~aDvVi~atG~~~lI~---~  148 (542)
                      ++++|||+|.+|..+++.+...|.    +|+++|+++.+..... ..|..+ .+.+++++++|+||.|+- +..+.   .
T Consensus         3 ~~i~iIG~G~mG~~~a~~l~~~g~~~~~~V~~~~r~~~~~~~~~~~~g~~~~~~~~e~~~~aDvVilav~-~~~~~~v~~   81 (247)
T 3gt0_A            3 KQIGFIGCGNMGMAMIGGMINKNIVSSNQIICSDLNTANLKNASEKYGLTTTTDNNEVAKNADILILSIK-PDLYASIIN   81 (247)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTSSCGGGEEEECSCHHHHHHHHHHHCCEECSCHHHHHHHCSEEEECSC-TTTHHHHC-
T ss_pred             CeEEEECccHHHHHHHHHHHhCCCCCCCeEEEEeCCHHHHHHHHHHhCCEEeCChHHHHHhCCEEEEEeC-HHHHHHHHH
Confidence            479999999999999999999998    9999999998776543 346664 467788889999999983 33321   1


Q ss_pred             HHHhccCCCeEEEeccCC
Q psy4626         149 EHMDKMKNGCVVCNMGHS  166 (542)
Q Consensus       149 e~l~~mk~GailvnvG~g  166 (542)
                      +....++++.+++++..+
T Consensus        82 ~l~~~l~~~~~vvs~~~g   99 (247)
T 3gt0_A           82 EIKEIIKNDAIIVTIAAG   99 (247)
T ss_dssp             --CCSSCTTCEEEECSCC
T ss_pred             HHHhhcCCCCEEEEecCC
Confidence            223346788888855444

>4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens}

Probab=97.75  E-value=7.5e-05  Score=76.71  Aligned_cols=101  Identities=17%  Similarity=0.150  Sum_probs=69.1

Q ss_pred             HHHHHHHHhhcCccccCcEEEEEcC-ChhHHHHHHHHHhCC-CEEEEEeCCchhhhhhhcCCce-eeC----HHHHh---
Q psy4626          61 ESIIDSLKRSTDVMFGGKQVVLCGY-GEVGKGCCQSLKGLG-CVIYITEIDPICALQACMDGFS-VVK----LNEVI---  130 (542)
Q Consensus        61 ~s~~~ai~r~~~~~l~GktVvViG~-G~IG~~vA~~l~~~G-a~Viv~d~dp~r~~~A~~~G~~-v~~----l~e~l---  130 (542)
                      ...|+++.+.. ...+|++|+|.|. |.+|..+++.++..| ++|++++ ++.+...+. .|++ +++    ..+.+   
T Consensus       128 ~ta~~~l~~~~-~~~~g~~VlV~Ga~G~vG~~a~qla~~~g~~~V~~~~-~~~~~~~~~-~ga~~~~~~~~~~~~~~~~~  204 (349)
T 4a27_A          128 VTAYVMLFEVA-NLREGMSVLVHSAGGGVGQAVAQLCSTVPNVTVFGTA-STFKHEAIK-DSVTHLFDRNADYVQEVKRI  204 (349)
T ss_dssp             HHHHHHHHTTS-CCCTTCEEEESSTTSHHHHHHHHHHTTSTTCEEEEEE-CGGGHHHHG-GGSSEEEETTSCHHHHHHHH
T ss_pred             HHHHHHHHHhc-CCCCCCEEEEEcCCcHHHHHHHHHHHHcCCcEEEEeC-CHHHHHHHH-cCCcEEEcCCccHHHHHHHh
Confidence            34566664433 3458999999999 999999999999985 6899887 555655555 6764 222    22222   


Q ss_pred             --cCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCC
Q psy4626         131 --RTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHS  166 (542)
Q Consensus       131 --~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g  166 (542)
                        .++|++++|+|...+  .+.++.+++++.++.+|..
T Consensus       205 ~~~g~Dvv~d~~g~~~~--~~~~~~l~~~G~~v~~G~~  240 (349)
T 4a27_A          205 SAEGVDIVLDCLCGDNT--GKGLSLLKPLGTYILYGSS  240 (349)
T ss_dssp             CTTCEEEEEEECC---------CTTEEEEEEEEEEC--
T ss_pred             cCCCceEEEECCCchhH--HHHHHHhhcCCEEEEECCC
Confidence              479999999987654  4789999999999999864

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=97.74  E-value=5e-05  Score=76.52  Aligned_cols=104  Identities=11%  Similarity=0.134  Sum_probs=71.7

Q ss_pred             HHHHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCCC-EEEEEeCCchhhhhhhcCCceeeC---HHHHhcCCcEEE
Q psy4626          62 SIIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMDGFSVVK---LNEVIRTVDIVV  137 (542)
Q Consensus        62 s~~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga-~Viv~d~dp~r~~~A~~~G~~v~~---l~e~l~~aDvVi  137 (542)
                      +++.++.+. +..+.|++++|+|+|.+|+.++..|...|+ +|+++++++.++.... ......+   +.+++.++|+||
T Consensus       103 G~~~~L~~~-~~~l~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la-~~~~~~~~~~~~~~~~~aDiVI  180 (277)
T 3don_A          103 GYVNGLKQI-YEGIEDAYILILGAGGASKGIANELYKIVRPTLTVANRTMSRFNNWS-LNINKINLSHAESHLDEFDIII  180 (277)
T ss_dssp             HHHHHHHHH-STTGGGCCEEEECCSHHHHHHHHHHHTTCCSCCEEECSCGGGGTTCC-SCCEEECHHHHHHTGGGCSEEE
T ss_pred             HHHHHHHHh-CCCcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHH-HhcccccHhhHHHHhcCCCEEE
Confidence            344454443 346789999999999999999999999999 9999999988765332 2333333   345578999999


Q ss_pred             EcCCCc--ccCCH-HHHhccCCCeEEEeccCCC
Q psy4626         138 TATGNK--NVVTR-EHMDKMKNGCVVCNMGHSN  167 (542)
Q Consensus       138 ~atG~~--~lI~~-e~l~~mk~GailvnvG~g~  167 (542)
                      +||...  +-... -..+.++++.+++.+...+
T Consensus       181 naTp~Gm~~~~~~~l~~~~l~~~~~V~D~vY~P  213 (277)
T 3don_A          181 NTTPAGMNGNTDSVISLNRLASHTLVSDIVYNP  213 (277)
T ss_dssp             ECCC-------CCSSCCTTCCSSCEEEESCCSS
T ss_pred             ECccCCCCCCCcCCCCHHHcCCCCEEEEecCCC
Confidence            987421  11100 0245678888888887654

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=97.74  E-value=5.8e-05  Score=75.79  Aligned_cols=90  Identities=14%  Similarity=0.124  Sum_probs=68.4

Q ss_pred             CcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCCcEEEEcCCCc----ccCCHHHHh
Q psy4626          77 GKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNK----NVVTREHMD  152 (542)
Q Consensus        77 GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~aDvVi~atG~~----~lI~~e~l~  152 (542)
                      |++++|+|+|.+|+.++..|...|.+|+++++++.++......|....+.+++ .++|+||+||...    ..+..+.+.
T Consensus       118 ~k~vlvlGaGGaaraia~~L~~~G~~v~V~nRt~~ka~~la~~~~~~~~~~~l-~~~DiVInaTp~Gm~~~~~l~~~~l~  196 (269)
T 3phh_A          118 YQNALILGAGGSAKALACELKKQGLQVSVLNRSSRGLDFFQRLGCDCFMEPPK-SAFDLIINATSASLHNELPLNKEVLK  196 (269)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTHHHHHHHTCEEESSCCS-SCCSEEEECCTTCCCCSCSSCHHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeEecHHHh-ccCCEEEEcccCCCCCCCCCChHHHH
Confidence            99999999999999999999999999999999998875433556565555543 3899999987421    135544332


Q ss_pred             -ccCCCeEEEeccCCC
Q psy4626         153 -KMKNGCVVCNMGHSN  167 (542)
Q Consensus       153 -~mk~GailvnvG~g~  167 (542)
                       .++++.+++.+...+
T Consensus       197 ~~l~~~~~v~D~vY~P  212 (269)
T 3phh_A          197 GYFKEGKLAYDLAYGF  212 (269)
T ss_dssp             HHHHHCSEEEESCCSS
T ss_pred             hhCCCCCEEEEeCCCC
Confidence             577888888887655

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=97.73  E-value=8.7e-05  Score=78.59  Aligned_cols=228  Identities=19%  Similarity=0.215  Sum_probs=119.1

Q ss_pred             HHHHHHHhCCCEEEEEeCCch-h----hhhhhcCCceeeCHHHHhcCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccC
Q psy4626          91 GCCQSLKGLGCVIYITEIDPI-C----ALQACMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGH  165 (542)
Q Consensus        91 ~vA~~l~~~Ga~Viv~d~dp~-r----~~~A~~~G~~v~~l~e~l~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~  165 (542)
                      ..++.|...|.+|+|= ...- .    -.+....|+.+ +.++++..||+|+-.-.  +.  .+.++.||+|.+++..-+
T Consensus        46 ~~v~~L~~~G~~V~VE-~gaG~~~~f~D~~Y~~aGa~i-~~~~~~~~adiIlkVk~--p~--~~e~~~l~~g~~l~~~lh  119 (405)
T 4dio_A           46 ESVKKLKSLGFDVVVE-AGAGLGSRIPDQEYEKAGARV-GTAADAKTADVILKVRR--PS--AQEISGYRSGAVVIAIMD  119 (405)
T ss_dssp             HHHHHHHHTTCEEEEE-TTTTGGGTCCHHHHHHTTCEE-ECGGGGGGCSEEEEEEC--CC--TTTGGGSCTTCEEEEECC
T ss_pred             HHHHHHHhCCCEEEEe-CCCCccCCCCHHHHHHcCCEE-chHHhhccCCEEEEeCC--CC--hhHHhhcCCCcEEEEEec
Confidence            4566777889998774 3321 1    12234557776 55677888999876421  11  357899999999998776


Q ss_pred             CC-cccChHhhcCCCcceeeeccceeeEecCCCCEEEEecCCCcccccCCCChhHHHhhHHHHHHHHHHHHhcCCCCCCC
Q psy4626         166 SN-TEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIVLLAEGRLVNLSCSSLPSFVVSITACTQALALIELFNAPSGRYK  244 (542)
Q Consensus       166 g~-~eid~~aL~~~~l~v~~~~~~v~~y~~~dg~~I~LLa~GrLvnl~~~thp~~vmd~sfa~q~la~~~L~~~~~~~~~  244 (542)
                      .. +.-.+++|.++.++...-.      ..++     .-..|+++-|.    |+--+.-..|.|..+  +.+....+-+-
T Consensus       120 ~~~~~~l~~~l~~~~it~ia~E------~i~r-----~~ra~~l~~ls----~~s~iAGy~Av~~aa--~~l~~~~~~l~  182 (405)
T 4dio_A          120 PYGNEEAISAMAGAGLTTFAME------LMPR-----ITRAQSMDVLS----SQANLAGYQAVIDAA--YEYDRALPMMM  182 (405)
T ss_dssp             CTTCHHHHHHHHHTTCEEEEGG------GSCC-----SGGGGGGCHHH----HHHHHHHHHHHHHHH--HHCSSCSSCEE
T ss_pred             cccCHHHHHHHHHCCCeEEEee------cccc-----ccccCccceec----chhHHHHHHHHHHHH--HHhHhhhchhh
Confidence            53 2233455554443332111      0010     00112333222    222212222333322  33321101111


Q ss_pred             CccccCChhhHHHHHHhcCCcccc-ccccccHHHHhhcCC----CCCCCCCCCccc-------------------cCCee
Q psy4626         245 SDVYLLPKKMDEYVASLHLPTFDA-HLTELSDEQAKYMGL----NKAGPFKPSYYS-------------------MDGFS  300 (542)
Q Consensus       245 ~gv~~lp~~~d~~VA~l~L~~lg~-~i~~lt~~~a~~lg~----~e~~p~~a~ea~-------------------mdG~~  300 (542)
                      .++-.+|..        +.-.+|. .++....+.++++|+    ++.+|.+.-++.                   .+||.
T Consensus       183 t~~g~v~~~--------kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~~G~~~~~~~~~~~~d~~~~~~ya  254 (405)
T 4dio_A          183 TAAGTVPAA--------KIFVMGAGVAGLQAIATARRLGAVVSATDVRPAAKEQVASLGAKFIAVEDEEFKAAETAGGYA  254 (405)
T ss_dssp             ETTEEECCC--------EEEEECCSHHHHHHHHHHHHTTCEEEEECSSTTHHHHHHHTTCEECCCCC-------------
T ss_pred             ccCCCcCCC--------EEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCCceeecccccccccccccchh
Confidence            111111111        2223333 566666777888887    244444321111                   11232


Q ss_pred             e-----------eehhhhcccCcEEEEcc---C--CCCccCHhHHhcCCCCcEEEccCC---CCcccc
Q psy4626         301 V-----------VKLNEVIRTVDIVVTAT---G--NKNVVTREHMDKMKNGCVVCNMGH---SNTEID  349 (542)
Q Consensus       301 v-----------~~~~~a~~~~d~~~t~t---g--~~~vi~~~~~~~mk~gail~n~gh---~~~Ei~  349 (542)
                      .           ..++++++.+||||++.   |  .+.+|+++.++.||+|++++|.+-   +++|..
T Consensus       255 ~e~s~~~~~~~~~~l~e~l~~aDVVI~tvlipg~~ap~Lvt~emv~~Mk~GsVIVDvA~d~GG~~e~t  322 (405)
T 4dio_A          255 KEMSGEYQVKQAALVAEHIAKQDIVITTALIPGRPAPRLVTREMLDSMKPGSVVVDLAVERGGNIEGA  322 (405)
T ss_dssp             ----CHHHHHHHHHHHHHHHTCSEEEECCCCSSSCCCCCBCHHHHTTSCTTCEEEETTGGGTCSBTTC
T ss_pred             hhcchhhhhhhHhHHHHHhcCCCEEEECCcCCCCCCCEEecHHHHhcCCCCCEEEEEeCCCCCCcccc
Confidence            1           25788999999999973   3  556899999999999999999973   344544

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=97.72  E-value=0.00012  Score=77.00  Aligned_cols=218  Identities=18%  Similarity=0.158  Sum_probs=112.9

Q ss_pred             HHHHHHHhCCCEEEEEeCCch-h----hhhhhcCCceeeCHHHHhcCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccC
Q psy4626          91 GCCQSLKGLGCVIYITEIDPI-C----ALQACMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGH  165 (542)
Q Consensus        91 ~vA~~l~~~Ga~Viv~d~dp~-r----~~~A~~~G~~v~~l~e~l~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~  165 (542)
                      ..++.|...|.+|+| +...- .    -.+....|+.+.   +++. ||+|+-.-.    ...+.++.||+|.+++..-+
T Consensus        43 ~~v~~L~~~G~~V~V-E~gaG~~~~f~D~~Y~~aGa~i~---~~~~-adiIlkVk~----p~~~e~~~l~~g~~l~~~lh  113 (381)
T 3p2y_A           43 KVVEKLSARGLEVVV-ESAAGAGALFSDADYERAGATIG---DPWP-ADVVVKVNP----PTSDEISQLKPGSVLIGFLA  113 (381)
T ss_dssp             HHHHHHHHTTCEEEE-CTTTTGGGTCCHHHHHHTTCEES---CCTT-SSEEECSSC----CCHHHHTTSCTTCEEEECCC
T ss_pred             HHHHHHHhCCCEEEE-eCCCCccCCCChHHHHHCCCEEe---eeec-CCEEEEeCC----CChhHHhhccCCCEEEEEec
Confidence            456677788998776 33321 1    112234566655   3556 899865421    13578999999999998776


Q ss_pred             CC-cccChHhhcCCCcceeeeccceeeEecCCCCEEEEecCCCcccccCCCChhHHHhhHHHHHHHHHHHHhcCCCCCCC
Q psy4626         166 SN-TEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIVLLAEGRLVNLSCSSLPSFVVSITACTQALALIELFNAPSGRYK  244 (542)
Q Consensus       166 g~-~eid~~aL~~~~l~v~~~~~~v~~y~~~dg~~I~LLa~GrLvnl~~~thp~~vmd~sfa~q~la~~~L~~~~~~~~~  244 (542)
                      .. +.-.+++|.++.++...-.      ..+.     .-..++++-|.    |+--+.-..|.|..+  +.+....+-+-
T Consensus       114 ~~~~~~l~~~l~~~~it~ia~E------~i~~-----~~~~~~l~~l~----~~s~iAGy~Av~~aa--~~l~~~~~~l~  176 (381)
T 3p2y_A          114 PRTQPELASRLRIADVTAFAME------SIPR-----ISRAQTMDALS----SQANVAGYKAVLLGA--SLSTRFVPMLT  176 (381)
T ss_dssp             TTTCHHHHHHHHHTTCEEEEGG------GCCS-----SGGGGGGCHHH----HHHHHHHHHHHHHHH--HHCSSCSSCEE
T ss_pred             cccCHHHHHHHHHCCCeEEEee------cccc-----ccccccceeec----chhHHHHHHHHHHHH--HHhhhhhhhhh
Confidence            53 2223455554443332111      0010     00012222222    222222222333322  22221101111


Q ss_pred             CccccCChhhHHHHHHhcCCcccc-ccccccHHHHhhcCCC----CCCCCCCCcccc---------------CCeee---
Q psy4626         245 SDVYLLPKKMDEYVASLHLPTFDA-HLTELSDEQAKYMGLN----KAGPFKPSYYSM---------------DGFSV---  301 (542)
Q Consensus       245 ~gv~~lp~~~d~~VA~l~L~~lg~-~i~~lt~~~a~~lg~~----e~~p~~a~ea~m---------------dG~~v---  301 (542)
                      .++-.+|..        +.-.+|. .++....+.++++|+.    +.+|.+.-++.-               .||..   
T Consensus       177 ~~~~~v~~~--------kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~lGa~~~~l~~~~~~~~gya~~~~  248 (381)
T 3p2y_A          177 TAAGTVKPA--------SALVLGVGVAGLQALATAKRLGAKTTGYDVRPEVAEQVRSVGAQWLDLGIDAAGEGGYARELS  248 (381)
T ss_dssp             CSSCEECCC--------EEEEESCSHHHHHHHHHHHHHTCEEEEECSSGGGHHHHHHTTCEECCCC-------------C
T ss_pred             cccCCcCCC--------EEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeccccccccccchhhhh
Confidence            122222222        2223333 6666677778888872    333433222211               22321   


Q ss_pred             --------eehhhhcccCcEEEEcc---C--CCCccCHhHHhcCCCCcEEEccC
Q psy4626         302 --------VKLNEVIRTVDIVVTAT---G--NKNVVTREHMDKMKNGCVVCNMG  342 (542)
Q Consensus       302 --------~~~~~a~~~~d~~~t~t---g--~~~vi~~~~~~~mk~gail~n~g  342 (542)
                              ..++++++.+||||++.   |  .+.+|+++.++.||+|++++|.+
T Consensus       249 ~~~~~~~~~~l~e~l~~aDIVI~tv~iPg~~ap~Lvt~emv~~MkpGsVIVDvA  302 (381)
T 3p2y_A          249 EAERAQQQQALEDAITKFDIVITTALVPGRPAPRLVTAAAATGMQPGSVVVDLA  302 (381)
T ss_dssp             HHHHHHHHHHHHHHHTTCSEEEECCCCTTSCCCCCBCHHHHHTSCTTCEEEETT
T ss_pred             HHHHhhhHHHHHHHHhcCCEEEECCCCCCcccceeecHHHHhcCCCCcEEEEEe
Confidence                    14678999999999974   3  34689999999999999999987

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=97.70  E-value=0.00011  Score=74.03  Aligned_cols=102  Identities=16%  Similarity=0.222  Sum_probs=71.8

Q ss_pred             HHHHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCCC-EEEEEeCCchhhhhh-hcC----CceeeCHHHHhcCCcE
Q psy4626          62 SIIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQA-CMD----GFSVVKLNEVIRTVDI  135 (542)
Q Consensus        62 s~~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga-~Viv~d~dp~r~~~A-~~~----G~~v~~l~e~l~~aDv  135 (542)
                      +++.++.+. +..+.|++++|+|+|.+|+.++..|...|+ +|+++++++.++... ...    ...+.+++++..++|+
T Consensus       112 G~~~~L~~~-~~~l~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~~~~~~~~~~~~~~~l~~~aDi  190 (281)
T 3o8q_A          112 GLVQDLLAQ-QVLLKGATILLIGAGGAARGVLKPLLDQQPASITVTNRTFAKAEQLAELVAAYGEVKAQAFEQLKQSYDV  190 (281)
T ss_dssp             HHHHHHHHT-TCCCTTCEEEEECCSHHHHHHHHHHHTTCCSEEEEEESSHHHHHHHHHHHGGGSCEEEEEGGGCCSCEEE
T ss_pred             HHHHHHHHh-CCCccCCEEEEECchHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhccCCeeEeeHHHhcCCCCE
Confidence            344455432 456789999999999999999999999997 999999998875432 211    1345566665578999


Q ss_pred             EEEcCCCc-----ccCCHHHHhccCCCeEEEeccCCC
Q psy4626         136 VVTATGNK-----NVVTREHMDKMKNGCVVCNMGHSN  167 (542)
Q Consensus       136 Vi~atG~~-----~lI~~e~l~~mk~GailvnvG~g~  167 (542)
                      ||+||...     ..+.   .+.++++.+++.+...+
T Consensus       191 IInaTp~gm~~~~~~l~---~~~l~~~~~V~DlvY~P  224 (281)
T 3o8q_A          191 IINSTSASLDGELPAID---PVIFSSRSVCYDMMYGK  224 (281)
T ss_dssp             EEECSCCCC----CSCC---GGGEEEEEEEEESCCCS
T ss_pred             EEEcCcCCCCCCCCCCC---HHHhCcCCEEEEecCCC
Confidence            99998532     1222   24467777777776543

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=97.69  E-value=0.00011  Score=73.93  Aligned_cols=87  Identities=16%  Similarity=0.181  Sum_probs=61.9

Q ss_pred             cEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhh-----------cCC------------------ce-eeCHH
Q psy4626          78 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQAC-----------MDG------------------FS-VVKLN  127 (542)
Q Consensus        78 ktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~-----------~~G------------------~~-v~~l~  127 (542)
                      ++|+|+|.|.+|..+|..+...|.+|+++|+++.+...+.           ..|                  .. ..+++
T Consensus        16 ~~I~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~   95 (302)
T 1f0y_A           16 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATSTDAA   95 (302)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEESCHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCccccchhhHHHHHhceEEecCHH
Confidence            6899999999999999999999999999999987654321           122                  12 23566


Q ss_pred             HHhcCCcEEEEcCCCcc-c---CCHHHHhccCCCeEEEecc
Q psy4626         128 EVIRTVDIVVTATGNKN-V---VTREHMDKMKNGCVVCNMG  164 (542)
Q Consensus       128 e~l~~aDvVi~atG~~~-l---I~~e~l~~mk~GailvnvG  164 (542)
                      ++++++|+||+|..... +   +-.+..+.++++++++...
T Consensus        96 ~~~~~aD~Vi~avp~~~~~~~~v~~~l~~~~~~~~iv~s~t  136 (302)
T 1f0y_A           96 SVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNT  136 (302)
T ss_dssp             HHTTSCSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEECC
T ss_pred             HhhcCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECC
Confidence            68899999999975421 1   1122233567888887433

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=97.68  E-value=8.1e-05  Score=74.67  Aligned_cols=88  Identities=15%  Similarity=0.082  Sum_probs=67.3

Q ss_pred             CcEEEEEcCChhHHHHHHHHHhCCC---EEEEEeCCchhhhhhhc-CCceee-CHHHHhcCCcEEEEcCCCcccCCHHHH
Q psy4626          77 GKQVVLCGYGEVGKGCCQSLKGLGC---VIYITEIDPICALQACM-DGFSVV-KLNEVIRTVDIVVTATGNKNVVTREHM  151 (542)
Q Consensus        77 GktVvViG~G~IG~~vA~~l~~~Ga---~Viv~d~dp~r~~~A~~-~G~~v~-~l~e~l~~aDvVi~atG~~~lI~~e~l  151 (542)
                      .++++|||+|.+|..++..+...|.   +|+++|+++.+...... .|..+. +..++++++|+||.|+- +..+. +.+
T Consensus         3 ~~~I~iIG~G~mG~aia~~l~~~g~~~~~V~v~dr~~~~~~~l~~~~gi~~~~~~~~~~~~aDvVilav~-p~~~~-~vl   80 (280)
T 3tri_A            3 TSNITFIGGGNMARNIVVGLIANGYDPNRICVTNRSLDKLDFFKEKCGVHTTQDNRQGALNADVVVLAVK-PHQIK-MVC   80 (280)
T ss_dssp             CSCEEEESCSHHHHHHHHHHHHTTCCGGGEEEECSSSHHHHHHHHTTCCEEESCHHHHHSSCSEEEECSC-GGGHH-HHH
T ss_pred             CCEEEEEcccHHHHHHHHHHHHCCCCCCeEEEEeCCHHHHHHHHHHcCCEEeCChHHHHhcCCeEEEEeC-HHHHH-HHH
Confidence            4689999999999999999999998   89999999988765544 377654 67788999999999983 33332 332


Q ss_pred             ----hc-cCCCeEEEeccCC
Q psy4626         152 ----DK-MKNGCVVCNMGHS  166 (542)
Q Consensus       152 ----~~-mk~GailvnvG~g  166 (542)
                          .. ++++.+++++..+
T Consensus        81 ~~l~~~~l~~~~iiiS~~ag  100 (280)
T 3tri_A           81 EELKDILSETKILVISLAVG  100 (280)
T ss_dssp             HHHHHHHHTTTCEEEECCTT
T ss_pred             HHHHhhccCCCeEEEEecCC
Confidence                23 5777788766544

>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6

Probab=97.67  E-value=8e-05  Score=73.11  Aligned_cols=86  Identities=16%  Similarity=0.255  Sum_probs=63.1

Q ss_pred             EEEEEcCChhHHHHHHHHHhCCCEEEEEeC--CchhhhhhhcCCceeeCHHHHhcCCcEEEEcCCCcccCC--HHHHhcc
Q psy4626          79 QVVLCGYGEVGKGCCQSLKGLGCVIYITEI--DPICALQACMDGFSVVKLNEVIRTVDIVVTATGNKNVVT--REHMDKM  154 (542)
Q Consensus        79 tVvViG~G~IG~~vA~~l~~~Ga~Viv~d~--dp~r~~~A~~~G~~v~~l~e~l~~aDvVi~atG~~~lI~--~e~l~~m  154 (542)
                      +|+|||+|.+|..+|..|...|.+|+++|+  ++.+.......|.. .++++++..+|+||.|+.......  .+..+.+
T Consensus         2 ~I~iIG~G~mG~~la~~l~~~g~~V~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~aDvvi~~v~~~~~~~~~~~~~~~~   80 (264)
T 1i36_A            2 RVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERARTVGVT-ETSEEDVYSCPVVISAVTPGVALGAARRAGRHV   80 (264)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTCE-ECCHHHHHTSSEEEECSCGGGHHHHHHHHHTTC
T ss_pred             eEEEEechHHHHHHHHHHHHCCCeEEEeCCccCHHHHHHHHHCCCc-CCHHHHHhcCCEEEEECCCHHHHHHHHHHHHhc
Confidence            799999999999999999999999999987  55444434344666 667788889999999976543221  2334456


Q ss_pred             CCCeEEEeccCCC
Q psy4626         155 KNGCVVCNMGHSN  167 (542)
Q Consensus       155 k~GailvnvG~g~  167 (542)
                      ++  ++++++...
T Consensus        81 ~~--~vi~~s~~~   91 (264)
T 1i36_A           81 RG--IYVDINNIS   91 (264)
T ss_dssp             CS--EEEECSCCC
T ss_pred             Cc--EEEEccCCC
Confidence            66  888876543

>2dvm_A Malic enzyme, 439AA long hypothetical malate oxidoreductase; NAD, structural genomics, NPPSFA; HET: NAD MES; 1.60A {Pyrococcus horikoshii} PDB: 1ww8_A*

Probab=97.67  E-value=0.00025  Score=75.91  Aligned_cols=123  Identities=15%  Similarity=0.179  Sum_probs=85.2

Q ss_pred             HhHHHHHHHHHHHHHhh---cCccccCcEEEEEcCChhHHHHHHHHHhCCC---EEEEEe----CC--chhh-----hh-
Q psy4626          54 DNLYMCRESIIDSLKRS---TDVMFGGKQVVLCGYGEVGKGCCQSLKGLGC---VIYITE----ID--PICA-----LQ-  115 (542)
Q Consensus        54 d~~~g~~~s~~~ai~r~---~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga---~Viv~d----~d--p~r~-----~~-  115 (542)
                      |..++++...+.++.++   .+..+.+++|+|+|+|..|++++..|...|+   +|+++|    ++  ..+.     .. 
T Consensus       160 dD~~gtgntd~aG~~~AL~~~g~~l~~~rvlvlGAGgAg~aia~~L~~~G~~~~~I~vvd~~~~R~G~~~~a~~~~~L~~  239 (439)
T 2dvm_A          160 DDQQGTAAVVLAGLLNALKVVGKKISEITLALFGAGAAGFATLRILTEAGVKPENVRVVELVNGKPRILTSDLDLEKLFP  239 (439)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCCTTTCCEEEECCSHHHHHHHHHHHHTTCCGGGEEEEEEETTEEEECCTTSCHHHHST
T ss_pred             CCCcEEeehHHHHHHHHHHHhCCCccCCEEEEECccHHHHHHHHHHHHcCCCcCeEEEEEccCCCcCccccccchhHHHH
Confidence            34456663333343322   3456789999999999999999999999998   899999    76  2221     10 


Q ss_pred             -----hhcCCc--eeeCHHHHhcCCcEEEEcCCCc-ccCCHHHHhccCCCeEEEeccCCCcccChHhhc
Q psy4626         116 -----ACMDGF--SVVKLNEVIRTVDIVVTATGNK-NVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLR  176 (542)
Q Consensus       116 -----A~~~G~--~v~~l~e~l~~aDvVi~atG~~-~lI~~e~l~~mk~GailvnvG~g~~eid~~aL~  176 (542)
                           +.....  ...++.++++++|++|.+|+.+ ++++.+.++.|+++.++........+..+....
T Consensus       240 ~~~~~a~~~~~~~~~~~L~e~l~~aDVlInaT~~~~G~~~~e~v~~m~~~~iVfDLynP~~t~~~~~A~  308 (439)
T 2dvm_A          240 YRGWLLKKTNGENIEGGPQEALKDADVLISFTRPGPGVIKPQWIEKMNEDAIVFPLANPVPEILPEEAK  308 (439)
T ss_dssp             TCHHHHTTSCTTCCCSSHHHHHTTCSEEEECSCCCSSSSCHHHHTTSCTTCEEEECCSSSCSSCHHHHH
T ss_pred             HHHHHhhccccccccccHHHHhccCCEEEEcCCCccCCCChHHHHhcCCCCEEEECCCCCCcchHHHHH
Confidence                 111111  1335778889999999999763 788877889999999999884333466666554

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*

Probab=97.66  E-value=6.5e-05  Score=73.62  Aligned_cols=85  Identities=18%  Similarity=0.234  Sum_probs=64.7

Q ss_pred             EEEEEcCChhHHHHHHHHHhCC-CEEEEEeCCchhhhhhhc-CCceee-CHHHHhcCCcEEEEcCCCcccCCHHHHhccC
Q psy4626          79 QVVLCGYGEVGKGCCQSLKGLG-CVIYITEIDPICALQACM-DGFSVV-KLNEVIRTVDIVVTATGNKNVVTREHMDKMK  155 (542)
Q Consensus        79 tVvViG~G~IG~~vA~~l~~~G-a~Viv~d~dp~r~~~A~~-~G~~v~-~l~e~l~~aDvVi~atG~~~lI~~e~l~~mk  155 (542)
                      +|+|+|+|.+|..++..+...| .+|+++|+++.+...... .|..+. +.++++ .+|+||.|+. +..+ .+.+..++
T Consensus         2 ~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~~~~g~~~~~~~~~~~-~~D~vi~~v~-~~~~-~~v~~~l~   78 (263)
T 1yqg_A            2 NVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKELGVETSATLPELH-SDDVLILAVK-PQDM-EAACKNIR   78 (263)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHHTCCEEESSCCCCC-TTSEEEECSC-HHHH-HHHHTTCC
T ss_pred             EEEEECchHHHHHHHHHHHHCCCCeEEEECCCHHHHHHHHHhcCCEEeCCHHHHh-cCCEEEEEeC-chhH-HHHHHHhc
Confidence            6999999999999999999889 899999999887654433 366543 556677 9999999986 3333 35565554


Q ss_pred             C-CeEEEeccCC
Q psy4626         156 N-GCVVCNMGHS  166 (542)
Q Consensus       156 ~-GailvnvG~g  166 (542)
                      + +.+++++..+
T Consensus        79 ~~~~ivv~~~~g   90 (263)
T 1yqg_A           79 TNGALVLSVAAG   90 (263)
T ss_dssp             CTTCEEEECCTT
T ss_pred             cCCCEEEEecCC
Confidence            2 8888887443

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=97.64  E-value=8.5e-05  Score=74.98  Aligned_cols=78  Identities=14%  Similarity=0.293  Sum_probs=61.7

Q ss_pred             CcEEEEEc-CChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCCcEEEEcCCCcc---cCCHHHHh
Q psy4626          77 GKQVVLCG-YGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNKN---VVTREHMD  152 (542)
Q Consensus        77 GktVvViG-~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~aDvVi~atG~~~---lI~~e~l~  152 (542)
                      .++|+||| +|.+|..+|..++..|.+|+++|+++..            +..+++..+|+||.|+....   ++ .+...
T Consensus        21 ~~~I~iIGg~G~mG~~la~~l~~~G~~V~~~~~~~~~------------~~~~~~~~aDvVilavp~~~~~~vl-~~l~~   87 (298)
T 2pv7_A           21 IHKIVIVGGYGKLGGLFARYLRASGYPISILDREDWA------------VAESILANADVVIVSVPINLTLETI-ERLKP   87 (298)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCGG------------GHHHHHTTCSEEEECSCGGGHHHHH-HHHGG
T ss_pred             CCEEEEEcCCCHHHHHHHHHHHhCCCeEEEEECCccc------------CHHHHhcCCCEEEEeCCHHHHHHHH-HHHHh
Confidence            56899999 9999999999999999999999987642            45677889999999975433   22 23334


Q ss_pred             ccCCCeEEEeccCCC
Q psy4626         153 KMKNGCVVCNMGHSN  167 (542)
Q Consensus       153 ~mk~GailvnvG~g~  167 (542)
                      .+++++++++++...
T Consensus        88 ~l~~~~iv~~~~svk  102 (298)
T 2pv7_A           88 YLTENMLLADLTSVK  102 (298)
T ss_dssp             GCCTTSEEEECCSCC
T ss_pred             hcCCCcEEEECCCCC
Confidence            578999999987654

>3ulk_A Ketol-acid reductoisomerase; branched-chain amino acid biosynthesis, rossmann fold, acetolactate, oxidoreductase; HET: CSX NDP; 2.30A {Escherichia coli} PDB: 1yrl_A*

Probab=97.64  E-value=0.00014  Score=77.46  Aligned_cols=92  Identities=27%  Similarity=0.368  Sum_probs=73.7

Q ss_pred             ccccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCc------hhhhhhhcCCceeeCHHHHhcCCcEEEEcCCC---c
Q psy4626          73 VMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDP------ICALQACMDGFSVVKLNEVIRTVDIVVTATGN---K  143 (542)
Q Consensus        73 ~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp------~r~~~A~~~G~~v~~l~e~l~~aDvVi~atG~---~  143 (542)
                      ..+.||+|+|||||.-|..-|+.||..|.+|+|-=+..      .....|..+|+.+.+..++++.||+|+..+..   +
T Consensus        33 ~~lkgK~IaVIGyGsQG~AqAlNLRDSGv~V~Vglr~~s~~e~~~S~~~A~~~Gf~v~~~~eA~~~ADvV~~L~PD~~q~  112 (491)
T 3ulk_A           33 SYLQGKKVVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGFKVGTYEELIPQADLVINLTPDKQHS  112 (491)
T ss_dssp             GGGTTSEEEEESCSHHHHHHHHHHHHTTCEEEEEECHHHHHTTCHHHHHHHHTTCEEEEHHHHGGGCSEEEECSCGGGHH
T ss_pred             HHHcCCEEEEeCCChHhHHHHhHHHhcCCcEEEEeCCCCcccccchHHHHHHCCCEecCHHHHHHhCCEEEEeCChhhHH
Confidence            35789999999999999999999999999999974311      12345788999999999999999999996542   2


Q ss_pred             ccCCHHHHhccCCCeEEEeccCC
Q psy4626         144 NVVTREHMDKMKNGCVVCNMGHS  166 (542)
Q Consensus       144 ~lI~~e~l~~mk~GailvnvG~g  166 (542)
                      .+. .+....||+|+.+.- +||
T Consensus       113 ~vy-~~I~p~lk~G~~L~f-aHG  133 (491)
T 3ulk_A          113 DVV-RTVQPLMKDGAALGY-SHG  133 (491)
T ss_dssp             HHH-HHHGGGSCTTCEEEE-SSC
T ss_pred             HHH-HHHHhhCCCCCEEEe-cCc
Confidence            333 356778999999986 454

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*

Probab=97.63  E-value=7.3e-05  Score=80.88  Aligned_cols=92  Identities=9%  Similarity=0.162  Sum_probs=70.5

Q ss_pred             ccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcC----Ccee-eCHHHHhcC---CcEEEEcCCCc---
Q psy4626          75 FGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMD----GFSV-VKLNEVIRT---VDIVVTATGNK---  143 (542)
Q Consensus        75 l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~----G~~v-~~l~e~l~~---aDvVi~atG~~---  143 (542)
                      ..-++|+|||+|.+|..+|..|...|.+|+++++++.+.......    |... .+++++++.   +|+||.++...   
T Consensus        13 ~~~~~IgvIGlG~MG~~lA~~La~~G~~V~v~~r~~~~~~~l~~~~~~~gi~~~~s~~e~v~~l~~aDvVil~Vp~~~~v   92 (480)
T 2zyd_A           13 MSKQQIGVVGMAVMGRNLALNIESRGYTVSIFNRSREKTEEVIAENPGKKLVPYYTVKEFVESLETPRRILLMVKAGAGT   92 (480)
T ss_dssp             --CBSEEEECCSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHSTTSCEEECSSHHHHHHTBCSSCEEEECSCSSSHH
T ss_pred             cCCCeEEEEccHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHhhCCCCCeEEeCCHHHHHhCCCCCCEEEEECCCHHHH
Confidence            456789999999999999999999999999999998876544332    5543 467787766   99999987542   


Q ss_pred             -ccCCHHHHhccCCCeEEEeccCCC
Q psy4626         144 -NVVTREHMDKMKNGCVVCNMGHSN  167 (542)
Q Consensus       144 -~lI~~e~l~~mk~GailvnvG~g~  167 (542)
                       .++ .+....+++|.++++++.+.
T Consensus        93 ~~vl-~~l~~~l~~g~iIId~s~g~  116 (480)
T 2zyd_A           93 DAAI-DSLKPYLDKGDIIIDGGNTF  116 (480)
T ss_dssp             HHHH-HHHGGGCCTTCEEEECSCCC
T ss_pred             HHHH-HHHHhhcCCCCEEEECCCCC
Confidence             233 24456788999999998874

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=97.62  E-value=0.00035  Score=70.08  Aligned_cols=103  Identities=17%  Similarity=0.213  Sum_probs=71.5

Q ss_pred             HHHHHH-HHhhcCccccCcEEEEEcCChhHHHHHHHHHhCCC-EEEEEeCCchhhhhh-hcCC---ceeeCHHHHh-cCC
Q psy4626          61 ESIIDS-LKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQA-CMDG---FSVVKLNEVI-RTV  133 (542)
Q Consensus        61 ~s~~~a-i~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga-~Viv~d~dp~r~~~A-~~~G---~~v~~l~e~l-~~a  133 (542)
                      .+++.+ +. ..+..+.|++++|+|+|.+|+.++..|...|+ +|+++++++.++.+. ...+   ..+.+.+++- .++
T Consensus       104 ~G~~~~lL~-~~~~~l~~k~~lvlGaGg~~~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~~~~~~~~~l~~~~~  182 (272)
T 3pwz_A          104 IGLLRDIEE-NLGEPLRNRRVLLLGAGGAVRGALLPFLQAGPSELVIANRDMAKALALRNELDHSRLRISRYEALEGQSF  182 (272)
T ss_dssp             HHHHHHHHT-TSCCCCTTSEEEEECCSHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHCCTTEEEECSGGGTTCCC
T ss_pred             HHHHHHHHH-HcCCCccCCEEEEECccHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhccCCeeEeeHHHhcccCC
Confidence            344455 43 33456789999999999999999999999997 999999999876532 2212   3445555543 789


Q ss_pred             cEEEEcCCCc-----ccCCHHHHhccCCCeEEEeccCCC
Q psy4626         134 DIVVTATGNK-----NVVTREHMDKMKNGCVVCNMGHSN  167 (542)
Q Consensus       134 DvVi~atG~~-----~lI~~e~l~~mk~GailvnvG~g~  167 (542)
                      |+||+||...     ..+.   .+.++++.+++.+...+
T Consensus       183 DivInaTp~gm~~~~~~i~---~~~l~~~~~V~DlvY~P  218 (272)
T 3pwz_A          183 DIVVNATSASLTADLPPLP---ADVLGEAALAYELAYGK  218 (272)
T ss_dssp             SEEEECSSGGGGTCCCCCC---GGGGTTCSEEEESSCSC
T ss_pred             CEEEECCCCCCCCCCCCCC---HHHhCcCCEEEEeecCC
Confidence            9999998531     1232   24567888887776544

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=97.62  E-value=0.00014  Score=74.33  Aligned_cols=86  Identities=12%  Similarity=0.134  Sum_probs=63.9

Q ss_pred             cEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcC-Cc---------------eeeCHHHHhcCCcEEEEcCC
Q psy4626          78 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMD-GF---------------SVVKLNEVIRTVDIVVTATG  141 (542)
Q Consensus        78 ktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~-G~---------------~v~~l~e~l~~aDvVi~atG  141 (542)
                      .+|+|+|+|.+|..+|..|...|.+|+++++++.+....... +.               ...++++++..+|+||.|+.
T Consensus         5 mki~iiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~v~   84 (359)
T 1bg6_A            5 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILIVVP   84 (359)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEEECSC
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHhcCCeEEeccccccccccceecCCHHHHHhcCCEEEEeCC
Confidence            589999999999999999999999999999998765543332 21               12356677889999999987


Q ss_pred             CcccCC--HHHHhccCCCeEEEec
Q psy4626         142 NKNVVT--REHMDKMKNGCVVCNM  163 (542)
Q Consensus       142 ~~~lI~--~e~l~~mk~Gailvnv  163 (542)
                      +...-.  .+....++++..+++.
T Consensus        85 ~~~~~~~~~~l~~~l~~~~~vv~~  108 (359)
T 1bg6_A           85 AIHHASIAANIASYISEGQLIILN  108 (359)
T ss_dssp             GGGHHHHHHHHGGGCCTTCEEEES
T ss_pred             chHHHHHHHHHHHhCCCCCEEEEc
Confidence            543311  1233457889988877

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=97.60  E-value=0.00015  Score=77.76  Aligned_cols=89  Identities=18%  Similarity=0.223  Sum_probs=67.4

Q ss_pred             cEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhc-------------------CC-ce-eeCHHHHhcCCcEE
Q psy4626          78 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACM-------------------DG-FS-VVKLNEVIRTVDIV  136 (542)
Q Consensus        78 ktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~-------------------~G-~~-v~~l~e~l~~aDvV  136 (542)
                      .+|+|+|+|.+|..+|..|...|.+|+++|+++.+......                   .+ .. ..+++++++++|+|
T Consensus         3 mkI~VIG~G~vG~~lA~~La~~G~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~l~~~~~~~~l~~t~d~~ea~~~aDvV   82 (450)
T 3gg2_A            3 LDIAVVGIGYVGLVSATCFAELGANVRCIDTDRNKIEQLNSGTIPIYEPGLEKMIARNVKAGRLRFGTEIEQAVPEADII   82 (450)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTCSCCCSTTHHHHHHHHHHTTSEEEESCHHHHGGGCSEE
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHcCCCcccCCCHHHHHHhhcccCcEEEECCHHHHHhcCCEE
Confidence            48999999999999999999999999999999977543222                   11 22 24567788999999


Q ss_pred             EEcCCCcc---------cCC---HHHHhccCCCeEEEeccCC
Q psy4626         137 VTATGNKN---------VVT---REHMDKMKNGCVVCNMGHS  166 (542)
Q Consensus       137 i~atG~~~---------lI~---~e~l~~mk~GailvnvG~g  166 (542)
                      |.|.+++.         .+.   .+..+.+++|.++++.+.-
T Consensus        83 iiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~g~iVV~~STv  124 (450)
T 3gg2_A           83 FIAVGTPAGEDGSADMSYVLDAARSIGRAMSRYILIVTKSTV  124 (450)
T ss_dssp             EECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEECSCC
T ss_pred             EEEcCCCcccCCCcChHHHHHHHHHHHhhCCCCCEEEEeeeC
Confidence            99988762         121   2344568899999987753

>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}

Probab=97.58  E-value=0.00011  Score=79.89  Aligned_cols=90  Identities=10%  Similarity=0.117  Sum_probs=70.6

Q ss_pred             CcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhc-----CCcee-eCHHHHhcC---CcEEEEcCCCc----
Q psy4626          77 GKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACM-----DGFSV-VKLNEVIRT---VDIVVTATGNK----  143 (542)
Q Consensus        77 GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~-----~G~~v-~~l~e~l~~---aDvVi~atG~~----  143 (542)
                      ..+|+|||+|.+|..+|..|...|.+|+++|+++.+......     .|... .++++++..   +|+||.++...    
T Consensus        10 ~~~IgvIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~~gi~~~~s~~e~v~~l~~aDvVil~Vp~~~~v~   89 (497)
T 2p4q_A           10 SADFGLIGLAVMGQNLILNAADHGFTVCAYNRTQSKVDHFLANEAKGKSIIGATSIEDFISKLKRPRKVMLLVKAGAPVD   89 (497)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSHHHHHHHHTTTTTSSEECCSSHHHHHHTSCSSCEEEECCCSSHHHH
T ss_pred             CCCEEEEeeHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHcccccCCCeEEeCCHHHHHhcCCCCCEEEEEcCChHHHH
Confidence            458999999999999999999999999999999987765443     45543 467777765   99999987553    


Q ss_pred             ccCCHHHHhccCCCeEEEeccCCC
Q psy4626         144 NVVTREHMDKMKNGCVVCNMGHSN  167 (542)
Q Consensus       144 ~lI~~e~l~~mk~GailvnvG~g~  167 (542)
                      .++ .+....+++|.++++++.+.
T Consensus        90 ~vl-~~l~~~l~~g~iIId~s~~~  112 (497)
T 2p4q_A           90 ALI-NQIVPLLEKGDIIIDGGNSH  112 (497)
T ss_dssp             HHH-HHHGGGCCTTCEEEECSCCC
T ss_pred             HHH-HHHHHhCCCCCEEEECCCCC
Confidence            233 24456788999999988764

>3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis}

Probab=97.57  E-value=0.00029  Score=72.09  Aligned_cols=97  Identities=23%  Similarity=0.290  Sum_probs=72.0

Q ss_pred             cCcEEEEEcCChhHHHHHHHHHh-CCC-EEEEEeCCchhhhhhhc----CCce--eeCHHHHhcCCcEEEEcCCCc-ccC
Q psy4626          76 GGKQVVLCGYGEVGKGCCQSLKG-LGC-VIYITEIDPICALQACM----DGFS--VVKLNEVIRTVDIVVTATGNK-NVV  146 (542)
Q Consensus        76 ~GktVvViG~G~IG~~vA~~l~~-~Ga-~Viv~d~dp~r~~~A~~----~G~~--v~~l~e~l~~aDvVi~atG~~-~lI  146 (542)
                      ..++++|||.|.+|+..++.++. ++. +|.+++++ .....+..    .|..  ..+++++++++|+||+||... +++
T Consensus       120 ~~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~-~a~~la~~l~~~~g~~~~~~~~~eav~~aDIVi~aT~s~~pvl  198 (313)
T 3hdj_A          120 RSSVLGLFGAGTQGAEHAAQLSARFALEAILVHDPY-ASPEILERIGRRCGVPARMAAPADIAAQADIVVTATRSTTPLF  198 (313)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECTT-CCHHHHHHHHHHHTSCEEECCHHHHHHHCSEEEECCCCSSCSS
T ss_pred             CCcEEEEECccHHHHHHHHHHHHhCCCcEEEEECCc-HHHHHHHHHHHhcCCeEEEeCHHHHHhhCCEEEEccCCCCccc
Confidence            47899999999999999998876 455 89999998 22222221    2442  348889999999999998643 455


Q ss_pred             CHHHHhccCCCeEEEeccCCC---cccChHhhc
Q psy4626         147 TREHMDKMKNGCVVCNMGHSN---TEIDVNSLR  176 (542)
Q Consensus       147 ~~e~l~~mk~GailvnvG~g~---~eid~~aL~  176 (542)
                      ..   +.+++|..++.+|...   .|++...+.
T Consensus       199 ~~---~~l~~G~~V~~vGs~~p~~~El~~~~~~  228 (313)
T 3hdj_A          199 AG---QALRAGAFVGAIGSSLPHTRELDDEALR  228 (313)
T ss_dssp             CG---GGCCTTCEEEECCCSSTTCCCCCHHHHH
T ss_pred             CH---HHcCCCcEEEECCCCCCchhhcCHHHHh
Confidence            42   4689999999999863   577766554

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=97.56  E-value=0.00014  Score=72.21  Aligned_cols=99  Identities=21%  Similarity=0.230  Sum_probs=69.9

Q ss_pred             HHHHHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCCC-EEEEEeCCchhhhhhhc-CCc-eeeCHHHHhcCCcEEE
Q psy4626          61 ESIIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACM-DGF-SVVKLNEVIRTVDIVV  137 (542)
Q Consensus        61 ~s~~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga-~Viv~d~dp~r~~~A~~-~G~-~v~~l~e~l~~aDvVi  137 (542)
                      .+++.++.+.   .+.| +++|+|+|.+|+.++..|...|+ +|+++++++.++..... .+. ...++.+.+.++|+||
T Consensus        96 ~G~~~~l~~~---~~~~-~vliiGaGg~a~ai~~~L~~~G~~~I~v~nR~~~ka~~la~~~~~~~~~~~~~~~~~aDiVI  171 (253)
T 3u62_A           96 VGVVKSLEGV---EVKE-PVVVVGAGGAARAVIYALLQMGVKDIWVVNRTIERAKALDFPVKIFSLDQLDEVVKKAKSLF  171 (253)
T ss_dssp             HHHHHHTTTC---CCCS-SEEEECCSHHHHHHHHHHHHTTCCCEEEEESCHHHHHTCCSSCEEEEGGGHHHHHHTCSEEE
T ss_pred             HHHHHHHHhc---CCCC-eEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcccCCHHHHHhhhcCCCEEE
Confidence            3455555443   3578 99999999999999999999999 99999999987654222 221 2234566788999999


Q ss_pred             EcCCC--c---ccCCHHHHhccCCCeEEEeccCC
Q psy4626         138 TATGN--K---NVVTREHMDKMKNGCVVCNMGHS  166 (542)
Q Consensus       138 ~atG~--~---~lI~~e~l~~mk~GailvnvG~g  166 (542)
                      .||..  .   ..+..   +.++++.+++.+..+
T Consensus       172 natp~gm~p~~~~i~~---~~l~~~~~V~Divy~  202 (253)
T 3u62_A          172 NTTSVGMKGEELPVSD---DSLKNLSLVYDVIYF  202 (253)
T ss_dssp             ECSSTTTTSCCCSCCH---HHHTTCSEEEECSSS
T ss_pred             ECCCCCCCCCCCCCCH---HHhCcCCEEEEeeCC
Confidence            98732  1   12332   345788888887765

>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A

Probab=97.56  E-value=0.00011  Score=79.47  Aligned_cols=90  Identities=12%  Similarity=0.201  Sum_probs=70.5

Q ss_pred             CcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcC---Cce---eeCHHHHhc---CCcEEEEcCCCc----
Q psy4626          77 GKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMD---GFS---VVKLNEVIR---TVDIVVTATGNK----  143 (542)
Q Consensus        77 GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~---G~~---v~~l~e~l~---~aDvVi~atG~~----  143 (542)
                      -++|+|||+|.+|..+|..|...|.+|+++|+++.+.......   |..   ..++++++.   .+|+|+.+....    
T Consensus         4 ~~kIgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~g~~i~~~~s~~e~v~~l~~aDvVil~Vp~~~~v~   83 (484)
T 4gwg_A            4 QADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVVGAQSLKEMVSKLKKPRRIILLVKAGQAVD   83 (484)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHTBCSSCEEEECSCSSHHHH
T ss_pred             CCEEEEEChhHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcccCCCceeccCCHHHHHhhccCCCEEEEecCChHHHH
Confidence            3579999999999999999999999999999999876654433   322   356777765   699999987553    


Q ss_pred             ccCCHHHHhccCCCeEEEeccCCC
Q psy4626         144 NVVTREHMDKMKNGCVVCNMGHSN  167 (542)
Q Consensus       144 ~lI~~e~l~~mk~GailvnvG~g~  167 (542)
                      .++ .+....|++|.+++++|...
T Consensus        84 ~vl-~~l~~~L~~g~iIId~st~~  106 (484)
T 4gwg_A           84 DFI-EKLVPLLDTGDIIIDGGNSE  106 (484)
T ss_dssp             HHH-HHHGGGCCTTCEEEECSCCC
T ss_pred             HHH-HHHHHhcCCCCEEEEcCCCC
Confidence            233 35567889999999999875

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=97.56  E-value=0.00014  Score=72.60  Aligned_cols=89  Identities=13%  Similarity=0.168  Sum_probs=63.1

Q ss_pred             cEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCcee-------------eCHHHHh---cCCcEEEEcCC
Q psy4626          78 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV-------------VKLNEVI---RTVDIVVTATG  141 (542)
Q Consensus        78 ktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v-------------~~l~e~l---~~aDvVi~atG  141 (542)
                      .+|+|+|+|.+|..+|..|...|.+|+++++++.+.......|...             .+..++.   +.+|+||.|+.
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~v~   83 (316)
T 2ew2_A            4 MKIAIAGAGAMGSRLGIMLHQGGNDVTLIDQWPAHIEAIRKNGLIADFNGEEVVANLPIFSPEEIDHQNEQVDLIIALTK   83 (316)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHCEEEEETTEEEEECCCEECGGGCCTTSCCCSEEEECSC
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhCCEEEEeCCCeeEecceeecchhhcccCCCCCEEEEEec
Confidence            4799999999999999999999999999999987665444445332             2333433   38999999986


Q ss_pred             CcccCC--HHHHhccCCCeEEEeccCC
Q psy4626         142 NKNVVT--REHMDKMKNGCVVCNMGHS  166 (542)
Q Consensus       142 ~~~lI~--~e~l~~mk~GailvnvG~g  166 (542)
                      ...+-.  .+....++++.+++++..+
T Consensus        84 ~~~~~~v~~~l~~~l~~~~~iv~~~~g  110 (316)
T 2ew2_A           84 AQQLDAMFKAIQPMITEKTYVLCLLNG  110 (316)
T ss_dssp             HHHHHHHHHHHGGGCCTTCEEEECCSS
T ss_pred             cccHHHHHHHHHHhcCCCCEEEEecCC
Confidence            532211  1223456788998887644

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=97.55  E-value=0.00022  Score=62.20  Aligned_cols=85  Identities=22%  Similarity=0.319  Sum_probs=57.9

Q ss_pred             CcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhc-CCceee-----CHH---HH-hcCCcEEEEcCCCcccC
Q psy4626          77 GKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACM-DGFSVV-----KLN---EV-IRTVDIVVTATGNKNVV  146 (542)
Q Consensus        77 GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~-~G~~v~-----~l~---e~-l~~aDvVi~atG~~~lI  146 (542)
                      +++++|+|+|.+|+.+++.|...|.+|+++|+++.+...... .|..+.     +.+   +. +.++|+||.+++....-
T Consensus         4 ~m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~~~~~~~   83 (140)
T 1lss_A            4 GMYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVTGKEEVN   83 (140)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECCSCHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhcCcEEEEcCCCCHHHHHHcCcccCCEEEEeeCCchHH
Confidence            568999999999999999999999999999999876654332 354322     222   12 57899999998754221


Q ss_pred             --CHHHHhccCCCeEEE
Q psy4626         147 --TREHMDKMKNGCVVC  161 (542)
Q Consensus       147 --~~e~l~~mk~Gailv  161 (542)
                        -.+..+.++++.+++
T Consensus        84 ~~~~~~~~~~~~~~ii~  100 (140)
T 1lss_A           84 LMSSLLAKSYGINKTIA  100 (140)
T ss_dssp             HHHHHHHHHTTCCCEEE
T ss_pred             HHHHHHHHHcCCCEEEE
Confidence              012344455555544

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5

Probab=97.55  E-value=0.00018  Score=72.18  Aligned_cols=103  Identities=18%  Similarity=0.135  Sum_probs=69.7

Q ss_pred             HHHHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhh-cC----------CceeeCHHHHh
Q psy4626          62 SIIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQAC-MD----------GFSVVKLNEVI  130 (542)
Q Consensus        62 s~~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~-~~----------G~~v~~l~e~l  130 (542)
                      +++.++.+. +..+.|++++|+|.|.+|+.+|..|...| +|+++++++.++.... ..          ..++.++.+.+
T Consensus       114 G~~~~L~~~-~~~l~~k~vlV~GaGgiG~aia~~L~~~G-~V~v~~r~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~~~~  191 (287)
T 1nvt_A          114 GARMALEEE-IGRVKDKNIVIYGAGGAARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEKLNKKFGEEVKFSGLDVDL  191 (287)
T ss_dssp             HHHHHHHHH-HCCCCSCEEEEECCSHHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHHHHTCCHHHHEEEECTTCCC
T ss_pred             HHHHHHHHh-CCCcCCCEEEEECchHHHHHHHHHHHHCC-CEEEEECCHHHHHHHHHHHhhhcccccceeEEEeeHHHhh
Confidence            344444432 23578999999999999999999999999 9999999887653221 11          11233334556


Q ss_pred             cCCcEEEEcCCCccc--CCHH---HHhccCCCeEEEeccCC
Q psy4626         131 RTVDIVVTATGNKNV--VTRE---HMDKMKNGCVVCNMGHS  166 (542)
Q Consensus       131 ~~aDvVi~atG~~~l--I~~e---~l~~mk~GailvnvG~g  166 (542)
                      .++|++|.++|....  .+..   ..+.++++.+++++...
T Consensus       192 ~~~DilVn~ag~~~~~~~~~~~~~~~~~l~~~~~v~Dv~y~  232 (287)
T 1nvt_A          192 DGVDIIINATPIGMYPNIDVEPIVKAEKLREDMVVMDLIYN  232 (287)
T ss_dssp             TTCCEEEECSCTTCTTCCSSCCSSCSTTCCSSSEEEECCCS
T ss_pred             CCCCEEEECCCCCCCCCCCCCCCCCHHHcCCCCEEEEeeeC
Confidence            789999999874321  0000   13567888888888754

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=97.54  E-value=0.00024  Score=76.38  Aligned_cols=90  Identities=12%  Similarity=0.206  Sum_probs=66.7

Q ss_pred             cEEEEEcCChhHHHHHHHHHhC--CCEEEEEeCCchhhhhhhc-------------------CCcee-eCHHHHhcCCcE
Q psy4626          78 KQVVLCGYGEVGKGCCQSLKGL--GCVIYITEIDPICALQACM-------------------DGFSV-VKLNEVIRTVDI  135 (542)
Q Consensus        78 ktVvViG~G~IG~~vA~~l~~~--Ga~Viv~d~dp~r~~~A~~-------------------~G~~v-~~l~e~l~~aDv  135 (542)
                      .+|+|+|+|.+|..+|..|...  |.+|+++|+++.+......                   .+... .++.++++++|+
T Consensus         6 mkI~VIG~G~mG~~lA~~La~~g~G~~V~~~d~~~~~~~~l~~g~~~i~e~~l~~~~~~~~~~~~~~t~~~~e~~~~aDv   85 (467)
T 2q3e_A            6 KKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNESRINAWNSPTLPIYEPGLKEVVESCRGKNLFFSTNIDDAIKEADL   85 (467)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHHHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEEESCHHHHHHHCSE
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHhCCCCCcCCCCHHHHHHHhhcCCEEEECCHHHHHhcCCE
Confidence            4899999999999999999888  7899999999876543211                   23333 356778889999


Q ss_pred             EEEcCCCcccCC-----------------HHHHhccCCCeEEEeccCCC
Q psy4626         136 VVTATGNKNVVT-----------------REHMDKMKNGCVVCNMGHSN  167 (542)
Q Consensus       136 Vi~atG~~~lI~-----------------~e~l~~mk~GailvnvG~g~  167 (542)
                      ||.|.+++.-.+                 .+..+.+++|.++++.+...
T Consensus        86 ViiaVptp~~~~~v~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~  134 (467)
T 2q3e_A           86 VFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKIVTEKSTVP  134 (467)
T ss_dssp             EEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHTCCSEEEEEECSCCC
T ss_pred             EEEEcCCchhhccccccCCCcHHHHHHHHHHHHhhCCCCCEEEECCcCC
Confidence            999987654221                 12345689999999876543

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=97.53  E-value=0.0002  Score=76.28  Aligned_cols=88  Identities=16%  Similarity=0.234  Sum_probs=65.5

Q ss_pred             EEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhc-------------------CC-ce-eeCHHHHhcCCcEEE
Q psy4626          79 QVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACM-------------------DG-FS-VVKLNEVIRTVDIVV  137 (542)
Q Consensus        79 tVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~-------------------~G-~~-v~~l~e~l~~aDvVi  137 (542)
                      +|+|+|+|.+|..+|..|...|.+|+++|+++.+......                   .| .. ..+++++++.+|+||
T Consensus         2 kI~VIG~G~vG~~~A~~la~~G~~V~~~d~~~~~~~~l~~~~~~i~e~~l~~~~~~~~~~g~l~~t~~~~~~~~~aDvvi   81 (436)
T 1mv8_A            2 RISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVLDSDVSF   81 (436)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHHTCSEEE
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHhCCCCCcCCCCHHHHHHhhcccCceEEeCCHHHHhccCCEEE
Confidence            6999999999999999999999999999999987654322                   22 22 235667788999999


Q ss_pred             EcCCCccc---------CC---HHHHhccCC---CeEEEeccCC
Q psy4626         138 TATGNKNV---------VT---REHMDKMKN---GCVVCNMGHS  166 (542)
Q Consensus       138 ~atG~~~l---------I~---~e~l~~mk~---GailvnvG~g  166 (542)
                      .|++++.-         +.   .+..+.+++   +.++++.+..
T Consensus        82 iaVptp~~~~~~~dl~~v~~v~~~i~~~l~~~~~~~iVV~~Stv  125 (436)
T 1mv8_A           82 ICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVVRSTV  125 (436)
T ss_dssp             ECCCCCBCTTSSBCCHHHHHHHHHHHHHHTTCCSCCEEEECSCC
T ss_pred             EEcCCCcccCCCcchHHHHHHHHHHHHHhcccCCCcEEEEeCCc
Confidence            99876542         21   122345678   8999987543

>1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A*

Probab=97.53  E-value=0.0003  Score=73.08  Aligned_cols=99  Identities=24%  Similarity=0.423  Sum_probs=73.0

Q ss_pred             ccCcEEEEEcCChhHHHHHHHHH-hCCC-EEEEEeCCchhhhhhhcC-----Cce---eeCHHHHhcCCcEEEEcCCCc-
Q psy4626          75 FGGKQVVLCGYGEVGKGCCQSLK-GLGC-VIYITEIDPICALQACMD-----GFS---VVKLNEVIRTVDIVVTATGNK-  143 (542)
Q Consensus        75 l~GktVvViG~G~IG~~vA~~l~-~~Ga-~Viv~d~dp~r~~~A~~~-----G~~---v~~l~e~l~~aDvVi~atG~~-  143 (542)
                      ...++++|||+|.+|+..+..+. ..+. +|.++++++.++......     |..   +.++++++.++|+||+||.+. 
T Consensus       127 ~~~~~v~iIGaG~~a~~~a~al~~~~~~~~V~V~~r~~~~a~~la~~~~~~~g~~~~~~~~~~eav~~aDiVi~aTps~~  206 (350)
T 1x7d_A          127 PNARKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKEYSGLTIRRASSVAEAVKGVDIITTVTADKA  206 (350)
T ss_dssp             TTCCEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTTCTTCEEEECSSHHHHHTTCSEEEECCCCSS
T ss_pred             ccCCeEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhccCceEEEeCCHHHHHhcCCEEEEeccCCC
Confidence            35789999999999999988764 4554 899999999876543221     532   246788899999999998753 


Q ss_pred             --ccCCHHHHhccCCCeEEEeccCCC---cccChHhhc
Q psy4626         144 --NVVTREHMDKMKNGCVVCNMGHSN---TEIDVNSLR  176 (542)
Q Consensus       144 --~lI~~e~l~~mk~GailvnvG~g~---~eid~~aL~  176 (542)
                        +++..   +.+++|..++.+|...   .|++...+.
T Consensus       207 ~~pvl~~---~~l~~G~~V~~vgs~~p~~~El~~~~~~  241 (350)
T 1x7d_A          207 YATIITP---DMLEPGMHLNAVGGDCPGKTELHADVLR  241 (350)
T ss_dssp             EEEEECG---GGCCTTCEEEECSCCBTTBEEECHHHHH
T ss_pred             CCceecH---HHcCCCCEEEECCCCCCCceeeCHHHHh
Confidence              44542   5689999999999752   566655444

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=97.52  E-value=0.0001  Score=70.58  Aligned_cols=76  Identities=16%  Similarity=0.312  Sum_probs=54.9

Q ss_pred             CccccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCCcEEEEcCCCcccCC---H
Q psy4626          72 DVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNKNVVT---R  148 (542)
Q Consensus        72 ~~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~aDvVi~atG~~~lI~---~  148 (542)
                      +..+.+++++|+|+|.+|..+|..|...|.+|+++|+++.                 .++++|+||.|+... .+.   .
T Consensus        14 ~~~~~~~~I~iiG~G~mG~~la~~l~~~g~~V~~~~~~~~-----------------~~~~aD~vi~av~~~-~~~~v~~   75 (209)
T 2raf_A           14 NLYFQGMEITIFGKGNMGQAIGHNFEIAGHEVTYYGSKDQ-----------------ATTLGEIVIMAVPYP-ALAALAK   75 (209)
T ss_dssp             ------CEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCC-----------------CSSCCSEEEECSCHH-HHHHHHH
T ss_pred             ccccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHH-----------------HhccCCEEEEcCCcH-HHHHHHH
Confidence            4567889999999999999999999999999999997653                 457899999998632 221   1


Q ss_pred             HHHhccCCCeEEEeccCC
Q psy4626         149 EHMDKMKNGCVVCNMGHS  166 (542)
Q Consensus       149 e~l~~mk~GailvnvG~g  166 (542)
                      +....++ +.++++++.+
T Consensus        76 ~l~~~~~-~~~vi~~~~g   92 (209)
T 2raf_A           76 QYATQLK-GKIVVDITNP   92 (209)
T ss_dssp             HTHHHHT-TSEEEECCCC
T ss_pred             HHHHhcC-CCEEEEECCC
Confidence            2223456 8899988775

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=97.50  E-value=0.00014  Score=74.21  Aligned_cols=89  Identities=13%  Similarity=0.176  Sum_probs=66.4

Q ss_pred             CcEEEEEcCChhHHHHHHHHHhCC----CEEEEEeCCch--hhhhhhcCCceee-CHHHHhcCCcEEEEcCCCcccCC--
Q psy4626          77 GKQVVLCGYGEVGKGCCQSLKGLG----CVIYITEIDPI--CALQACMDGFSVV-KLNEVIRTVDIVVTATGNKNVVT--  147 (542)
Q Consensus        77 GktVvViG~G~IG~~vA~~l~~~G----a~Viv~d~dp~--r~~~A~~~G~~v~-~l~e~l~~aDvVi~atG~~~lI~--  147 (542)
                      -.+|+|||+|.+|..+|..|...|    .+|+++++++.  +.......|..+. +..++++.+|+||.|+.. ..+.  
T Consensus        22 ~mkI~iIG~G~mG~ala~~L~~~G~~~~~~V~v~~r~~~~~~~~~l~~~G~~~~~~~~e~~~~aDvVilav~~-~~~~~v  100 (322)
T 2izz_A           22 SMSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDMDLATVSALRKMGVKLTPHNKETVQHSDVLFLAVKP-HIIPFI  100 (322)
T ss_dssp             CCCEEEESCSHHHHHHHHHHHHTTSSCGGGEEEECSCTTSHHHHHHHHHTCEEESCHHHHHHHCSEEEECSCG-GGHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCCCcceEEEECCCccHHHHHHHHHcCCEEeCChHHHhccCCEEEEEeCH-HHHHHH
Confidence            457999999999999999999999    68999999885  4444445577654 567788899999999853 3332  


Q ss_pred             -HHHHhccCCCeEEEeccCC
Q psy4626         148 -REHMDKMKNGCVVCNMGHS  166 (542)
Q Consensus       148 -~e~l~~mk~GailvnvG~g  166 (542)
                       .+....++++.+++++..+
T Consensus       101 l~~l~~~l~~~~ivvs~s~g  120 (322)
T 2izz_A          101 LDEIGADIEDRHIVVSCAAG  120 (322)
T ss_dssp             HHHHGGGCCTTCEEEECCTT
T ss_pred             HHHHHhhcCCCCEEEEeCCC
Confidence             1222356788899987544

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=97.49  E-value=0.00076  Score=69.28  Aligned_cols=89  Identities=18%  Similarity=0.238  Sum_probs=61.6

Q ss_pred             CcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhh-----------cCC----c-----------eeeCHHHHh
Q psy4626          77 GKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQAC-----------MDG----F-----------SVVKLNEVI  130 (542)
Q Consensus        77 GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~-----------~~G----~-----------~v~~l~e~l  130 (542)
                      -.+|+|+|+|.+|.++|+.+...|.+|+++|++|.....+.           ..|    .           ...++.+++
T Consensus         6 ~~~VaViGaG~MG~giA~~~a~~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~l~~i~~~~~l~~a~   85 (319)
T 3ado_A            6 AGDVLIVGSGLVGRSWAMLFASGGFRVKLYDIEPRQITGALENIRKEMKSLQQSGSLKGSLSAEEQLSLISSCTNLAEAV   85 (319)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHTTCCCSSSCHHHHHHTEEEECCHHHHT
T ss_pred             CCeEEEECCcHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCCccCHHHHHhhcccccchHhHh
Confidence            45899999999999999999999999999999986533221           111    0           123567788


Q ss_pred             cCCcEEEEcCCCcccCCHHHH----hccCCCeEEE-eccC
Q psy4626         131 RTVDIVVTATGNKNVVTREHM----DKMKNGCVVC-NMGH  165 (542)
Q Consensus       131 ~~aDvVi~atG~~~lI~~e~l----~~mk~Gailv-nvG~  165 (542)
                      +++|+||++.--.--+..+.|    +.+++++++. |++.
T Consensus        86 ~~ad~ViEav~E~l~iK~~lf~~l~~~~~~~aIlaSNTSs  125 (319)
T 3ado_A           86 EGVVHIQECVPENLDLKRKIFAQLDSIVDDRVVLSSSSSC  125 (319)
T ss_dssp             TTEEEEEECCCSCHHHHHHHHHHHHTTCCSSSEEEECCSS
T ss_pred             ccCcEEeeccccHHHHHHHHHHHHHHHhhhcceeehhhhh
Confidence            999999998632111222233    3468999988 5443

>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*

Probab=97.49  E-value=0.00014  Score=78.49  Aligned_cols=90  Identities=10%  Similarity=0.165  Sum_probs=68.2

Q ss_pred             cEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcC----Ccee-eCHHHHhcC---CcEEEEcCCCcccCC--
Q psy4626          78 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMD----GFSV-VKLNEVIRT---VDIVVTATGNKNVVT--  147 (542)
Q Consensus        78 ktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~----G~~v-~~l~e~l~~---aDvVi~atG~~~lI~--  147 (542)
                      .+|+|||+|.+|..+|..+...|.+|.++|+++.+.......    |... .++++++..   +|+||.++.....+.  
T Consensus         6 ~~IgvIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~gi~~~~s~~e~v~~l~~aDvVilavp~~~~v~~v   85 (474)
T 2iz1_A            6 ANFGVVGMAVMGKNLALNVESRGYTVAIYNRTTSKTEEVFKEHQDKNLVFTKTLEEFVGSLEKPRRIMLMVQAGAATDAT   85 (474)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSCEEECSSHHHHHHTBCSSCEEEECCCTTHHHHHH
T ss_pred             CcEEEEeeHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHhCcCCCeEEeCCHHHHHhhccCCCEEEEEccCchHHHHH
Confidence            479999999999999999999999999999998776543322    5543 467777765   999999876532221  


Q ss_pred             -HHHHhccCCCeEEEeccCCC
Q psy4626         148 -REHMDKMKNGCVVCNMGHSN  167 (542)
Q Consensus       148 -~e~l~~mk~GailvnvG~g~  167 (542)
                       .+....+++|.++++++.+.
T Consensus        86 l~~l~~~l~~g~iiId~s~~~  106 (474)
T 2iz1_A           86 IKSLLPLLDIGDILIDGGNTH  106 (474)
T ss_dssp             HHHHGGGCCTTCEEEECSCCC
T ss_pred             HHHHHhhCCCCCEEEECCCCC
Confidence             23345688999999988764

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=97.48  E-value=0.00012  Score=69.36  Aligned_cols=85  Identities=20%  Similarity=0.178  Sum_probs=62.6

Q ss_pred             EEEEEc-CChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhc-CC-------ceeeCHHHHhcCCcEEEEcCCCcccCCHH
Q psy4626          79 QVVLCG-YGEVGKGCCQSLKGLGCVIYITEIDPICALQACM-DG-------FSVVKLNEVIRTVDIVVTATGNKNVVTRE  149 (542)
Q Consensus        79 tVvViG-~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~-~G-------~~v~~l~e~l~~aDvVi~atG~~~lI~~e  149 (542)
                      +++|+| +|.+|..++..|...|.+|+++++++.+...... .+       ....+++++++++|+||.|+.... + .+
T Consensus         2 ~i~iiGa~G~~G~~ia~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~Vi~~~~~~~-~-~~   79 (212)
T 1jay_A            2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYRRIAGDASITGMKNEDAAEACDIAVLTIPWEH-A-ID   79 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHHHHHHHHHHHHHHSSCCEEEEEHHHHHHHCSEEEECSCHHH-H-HH
T ss_pred             eEEEEcCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccccccCCCChhhHHHHHhcCCEEEEeCChhh-H-HH
Confidence            689999 9999999999999999999999998876543221 12       333466778889999999986432 2 13


Q ss_pred             HHh----ccCCCeEEEeccCC
Q psy4626         150 HMD----KMKNGCVVCNMGHS  166 (542)
Q Consensus       150 ~l~----~mk~GailvnvG~g  166 (542)
                      .++    .+ ++.++++++.+
T Consensus        80 ~~~~l~~~~-~~~~vi~~~~g   99 (212)
T 1jay_A           80 TARDLKNIL-REKIVVSPLVP   99 (212)
T ss_dssp             HHHHTHHHH-TTSEEEECCCC
T ss_pred             HHHHHHHHc-CCCEEEEcCCC
Confidence            332    34 48899988865

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=97.48  E-value=0.00026  Score=71.57  Aligned_cols=86  Identities=13%  Similarity=0.174  Sum_probs=62.9

Q ss_pred             EEEEEcCChhHHHHHHHHHhCCCEEEEEeC--CchhhhhhhcCCc-----------eee---CHHHHhcCCcEEEEcCCC
Q psy4626          79 QVVLCGYGEVGKGCCQSLKGLGCVIYITEI--DPICALQACMDGF-----------SVV---KLNEVIRTVDIVVTATGN  142 (542)
Q Consensus        79 tVvViG~G~IG~~vA~~l~~~Ga~Viv~d~--dp~r~~~A~~~G~-----------~v~---~l~e~l~~aDvVi~atG~  142 (542)
                      +|+|+|+|.+|..+|..|...|.+|+++++  ++.+.......|.           .+.   ++.++++.+|+||.|+..
T Consensus         2 ~I~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~D~vi~~v~~   81 (335)
T 1txg_A            2 IVSILGAGAMGSALSVPLVDNGNEVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLENAEVVLLGVST   81 (335)
T ss_dssp             EEEEESCCHHHHHHHHHHHHHCCEEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTTCSEEEECSCG
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCeEEEEEccCCHHHHHHHHHhCcCcccCccccceEEecHHhHHHHHhcCCEEEEcCCh
Confidence            699999999999999999999999999999  8776554444442           333   456778899999999865


Q ss_pred             cccCC--HHHHhccCCCeEEEeccC
Q psy4626         143 KNVVT--REHMDKMKNGCVVCNMGH  165 (542)
Q Consensus       143 ~~lI~--~e~l~~mk~GailvnvG~  165 (542)
                      ..+-.  .+... ++++.+++++..
T Consensus        82 ~~~~~v~~~i~~-l~~~~~vv~~~n  105 (335)
T 1txg_A           82 DGVLPVMSRILP-YLKDQYIVLISK  105 (335)
T ss_dssp             GGHHHHHHHHTT-TCCSCEEEECCC
T ss_pred             HHHHHHHHHHhc-CCCCCEEEEEcC
Confidence            43211  12233 677888887753

>1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A

Probab=97.46  E-value=0.00053  Score=70.24  Aligned_cols=96  Identities=20%  Similarity=0.229  Sum_probs=70.2

Q ss_pred             cCcEEEEEcCChhHHHHHHHHHh-CCC-EEEEEeCCchhhhhhhc-C-----CceeeCHHHHhcCCcEEEEcCCCc-ccC
Q psy4626          76 GGKQVVLCGYGEVGKGCCQSLKG-LGC-VIYITEIDPICALQACM-D-----GFSVVKLNEVIRTVDIVVTATGNK-NVV  146 (542)
Q Consensus        76 ~GktVvViG~G~IG~~vA~~l~~-~Ga-~Viv~d~dp~r~~~A~~-~-----G~~v~~l~e~l~~aDvVi~atG~~-~lI  146 (542)
                      ..++++|+|+|.+|+..++.+.. .+. +|.++++++.++..... .     ...+.++++++ ++|+|++||.+. +++
T Consensus       124 ~~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~~~~a~~la~~~~~~~~~~~~~~~~e~v-~aDvVi~aTp~~~pv~  202 (322)
T 1omo_A          124 NSSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCEDRGISASVQPAEEAS-RCDVLVTTTPSRKPVV  202 (322)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHHTTCCEEECCHHHHT-SSSEEEECCCCSSCCB
T ss_pred             CCCEEEEEcCcHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhcCceEEECCHHHHh-CCCEEEEeeCCCCcee
Confidence            57899999999999999998876 454 89999999987653321 1     12245678888 999999988643 344


Q ss_pred             CHHHHhccCCCeEEEeccCCC---cccChHhh
Q psy4626         147 TREHMDKMKNGCVVCNMGHSN---TEIDVNSL  175 (542)
Q Consensus       147 ~~e~l~~mk~GailvnvG~g~---~eid~~aL  175 (542)
                      .   .+.+++|..++.+|...   .|++...+
T Consensus       203 ~---~~~l~~G~~V~~ig~~~p~~~el~~~~~  231 (322)
T 1omo_A          203 K---AEWVEEGTHINAIGADGPGKQELDVEIL  231 (322)
T ss_dssp             C---GGGCCTTCEEEECSCCSTTCCCBCHHHH
T ss_pred             c---HHHcCCCeEEEECCCCCCCccccCHHHH
Confidence            3   25689999999998763   45554433

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=97.46  E-value=0.00046  Score=70.78  Aligned_cols=104  Identities=20%  Similarity=0.246  Sum_probs=69.3

Q ss_pred             HHHHHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCCC-EEEEEeCC---chhhhhhh-c----CCc--eeeC----
Q psy4626          61 ESIIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEID---PICALQAC-M----DGF--SVVK----  125 (542)
Q Consensus        61 ~s~~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga-~Viv~d~d---p~r~~~A~-~----~G~--~v~~----  125 (542)
                      .+++.++.+. +..+.|++++|+|+|.+|+.++..|...|+ +|++++++   +.++.+.. .    .+.  .+.+    
T Consensus       139 ~Gf~~~L~~~-~~~l~gk~~lVlGaGG~g~aia~~L~~~Ga~~V~i~nR~~~~~~~a~~la~~~~~~~~~~~~~~~~~~~  217 (315)
T 3tnl_A          139 TGYMRALKEA-GHDIIGKKMTICGAGGAATAICIQAALDGVKEISIFNRKDDFYANAEKTVEKINSKTDCKAQLFDIEDH  217 (315)
T ss_dssp             HHHHHHHHHT-TCCCTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCH
T ss_pred             HHHHHHHHHc-CCCccCCEEEEECCChHHHHHHHHHHHCCCCEEEEEECCCchHHHHHHHHHHhhhhcCCceEEeccchH
Confidence            3344555442 456889999999999999999999999999 99999999   55543211 1    122  2332    


Q ss_pred             --HHHHhcCCcEEEEcCCC--cc-----cCCHHHHhccCCCeEEEeccCCC
Q psy4626         126 --LNEVIRTVDIVVTATGN--KN-----VVTREHMDKMKNGCVVCNMGHSN  167 (542)
Q Consensus       126 --l~e~l~~aDvVi~atG~--~~-----lI~~e~l~~mk~GailvnvG~g~  167 (542)
                        +.+.+.++|+||.||..  .+     .+.  ..+.++++.+++.+--.+
T Consensus       218 ~~l~~~l~~aDiIINaTp~Gm~~~~~~~p~~--~~~~l~~~~~V~DlvY~P  266 (315)
T 3tnl_A          218 EQLRKEIAESVIFTNATGVGMKPFEGETLLP--SADMLRPELIVSDVVYKP  266 (315)
T ss_dssp             HHHHHHHHTCSEEEECSSTTSTTSTTCCSCC--CGGGCCTTCEEEESCCSS
T ss_pred             HHHHhhhcCCCEEEECccCCCCCCCCCCCCC--cHHHcCCCCEEEEeccCC
Confidence              23456789999998742  11     110  234567777777766544

>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*

Probab=97.46  E-value=0.00019  Score=77.58  Aligned_cols=90  Identities=12%  Similarity=0.161  Sum_probs=68.6

Q ss_pred             cEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhc-----CCce-eeCHHHHh---cCCcEEEEcCCCcccCC-
Q psy4626          78 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACM-----DGFS-VVKLNEVI---RTVDIVVTATGNKNVVT-  147 (542)
Q Consensus        78 ktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~-----~G~~-v~~l~e~l---~~aDvVi~atG~~~lI~-  147 (542)
                      .+|+|||+|.+|..+|..|...|.+|.++|+++.+......     .|.. ..++++++   +.+|+||.++.+...+. 
T Consensus         3 m~IgvIG~G~mG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~g~gi~~~~~~~e~v~~l~~aDvVilaVp~~~~v~~   82 (482)
T 2pgd_A            3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVLGAHSLEEMVSKLKKPRRIILLVKAGQAVDN   82 (482)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHHBCSSCEEEECSCTTHHHHH
T ss_pred             CeEEEEChHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHhccccCCCeEEeCCHHHHHhhccCCCEEEEeCCChHHHHH
Confidence            36999999999999999999999999999999887655443     4554 34677776   48999999876532221 


Q ss_pred             --HHHHhccCCCeEEEeccCCC
Q psy4626         148 --REHMDKMKNGCVVCNMGHSN  167 (542)
Q Consensus       148 --~e~l~~mk~GailvnvG~g~  167 (542)
                        .+....+++|.++++++.+.
T Consensus        83 vl~~l~~~l~~g~iII~~s~~~  104 (482)
T 2pgd_A           83 FIEKLVPLLDIGDIIIDGGNSE  104 (482)
T ss_dssp             HHHHHHHHCCTTCEEEECSCCC
T ss_pred             HHHHHHhhcCCCCEEEECCCCC
Confidence              23445688999999987764

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=97.44  E-value=0.00037  Score=74.48  Aligned_cols=88  Identities=16%  Similarity=0.135  Sum_probs=65.8

Q ss_pred             CcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhc------------------CCcee-eCHHHHhcCCcEEE
Q psy4626          77 GKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACM------------------DGFSV-VKLNEVIRTVDIVV  137 (542)
Q Consensus        77 GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~------------------~G~~v-~~l~e~l~~aDvVi  137 (542)
                      -.+|+|+|.|.+|..+|..+.. |.+|+++|+++.+......                  .+... .+++++++++|+||
T Consensus        36 ~mkIaVIGlG~mG~~lA~~La~-G~~V~~~D~~~~~v~~l~~g~~~i~e~~l~~ll~~~~~~l~~ttd~~ea~~~aDvVi  114 (432)
T 3pid_A           36 FMKITISGTGYVGLSNGVLIAQ-NHEVVALDIVQAKVDMLNQKISPIVDKEIQEYLAEKPLNFRATTDKHDAYRNADYVI  114 (432)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHT-TSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHTTCSEEE
T ss_pred             CCEEEEECcCHHHHHHHHHHHc-CCeEEEEecCHHHhhHHhccCCccccccHHHHHhhccCCeEEEcCHHHHHhCCCEEE
Confidence            3489999999999999999987 9999999999987653322                  12333 35678899999999


Q ss_pred             EcCCCcc----------cCC---HHHHhccCCCeEEEeccCC
Q psy4626         138 TATGNKN----------VVT---REHMDKMKNGCVVCNMGHS  166 (542)
Q Consensus       138 ~atG~~~----------lI~---~e~l~~mk~GailvnvG~g  166 (542)
                      .|+.++.          .+.   ....+ +++|.++++.+.-
T Consensus       115 iaVPt~~~~~~~~~Dl~~V~~v~~~i~~-l~~g~iVV~~STv  155 (432)
T 3pid_A          115 IATPTDYDPKTNYFNTSTVEAVIRDVTE-INPNAVMIIKSTI  155 (432)
T ss_dssp             ECCCCEEETTTTEEECHHHHHHHHHHHH-HCTTSEEEECSCC
T ss_pred             EeCCCccccccccccHHHHHHHHHHHHh-cCCCcEEEEeCCC
Confidence            9987652          111   23345 8999999987754

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=97.41  E-value=0.00036  Score=75.14  Aligned_cols=87  Identities=13%  Similarity=0.153  Sum_probs=62.1

Q ss_pred             cEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhh--------hhhcCCc-------------e-eeCHHHHhcCCcE
Q psy4626          78 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICAL--------QACMDGF-------------S-VVKLNEVIRTVDI  135 (542)
Q Consensus        78 ktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~--------~A~~~G~-------------~-v~~l~e~l~~aDv  135 (542)
                      ++|+|||.|.+|.++|+.+...|.+|+++|+++.+..        .+...|.             . ..++ +.+++||+
T Consensus        55 ~kVaVIGaG~MG~~IA~~la~aG~~V~l~D~~~e~a~~~i~~~l~~~~~~G~l~~~~~~~~~~~i~~t~dl-~al~~aDl  133 (460)
T 3k6j_A           55 NSVAIIGGGTMGKAMAICFGLAGIETFLVVRNEQRCKQELEVMYAREKSFKRLNDKRIEKINANLKITSDF-HKLSNCDL  133 (460)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHTTEEEESCG-GGCTTCSE
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEECcHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhcceEEeCCH-HHHccCCE
Confidence            6899999999999999999999999999999987422        1222232             1 2344 36789999


Q ss_pred             EEEcCCCcccCC----HHHHhccCCCeEEE-eccC
Q psy4626         136 VVTATGNKNVVT----REHMDKMKNGCVVC-NMGH  165 (542)
Q Consensus       136 Vi~atG~~~lI~----~e~l~~mk~Gailv-nvG~  165 (542)
                      ||+|.....-+.    .+..+.++++++++ |++.
T Consensus       134 VIeAVpe~~~vk~~v~~~l~~~~~~~aIlasnTSs  168 (460)
T 3k6j_A          134 IVESVIEDMKLKKELFANLENICKSTCIFGTNTSS  168 (460)
T ss_dssp             EEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSS
T ss_pred             EEEcCCCCHHHHHHHHHHHHhhCCCCCEEEecCCC
Confidence            999975421111    23445679999996 5553

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=97.38  E-value=0.00033  Score=70.69  Aligned_cols=102  Identities=19%  Similarity=0.127  Sum_probs=69.0

Q ss_pred             HHHHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCCC-EEEEEeCCchhhhhh-hcC-----C--ceee---CHHHH
Q psy4626          62 SIIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQA-CMD-----G--FSVV---KLNEV  129 (542)
Q Consensus        62 s~~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga-~Viv~d~dp~r~~~A-~~~-----G--~~v~---~l~e~  129 (542)
                      +++.++.+. +..+.|++++|+|+|.+|+.++..|...|+ +|+++++++.++... ...     +  ....   ++.+.
T Consensus       113 G~~~~l~~~-~~~l~~k~vlVlGaGG~g~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~~~~~i~~~~~~~l~~~  191 (283)
T 3jyo_A          113 GFGRGMEEG-LPNAKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIEDV  191 (283)
T ss_dssp             HHHHHHHHH-CTTCCCSEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHHTSCCEEEECSTTHHHH
T ss_pred             HHHHHHHHh-CcCcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhhcCCceEEEcCHHHHHHH
Confidence            344454433 245789999999999999999999999999 899999998876432 111     1  1122   45567


Q ss_pred             hcCCcEEEEcCCC--cc----cCCHHHHhccCCCeEEEeccCCC
Q psy4626         130 IRTVDIVVTATGN--KN----VVTREHMDKMKNGCVVCNMGHSN  167 (542)
Q Consensus       130 l~~aDvVi~atG~--~~----lI~~e~l~~mk~GailvnvG~g~  167 (542)
                      +.++|+||+||..  .+    .+.   .+.++++.++..+-..+
T Consensus       192 l~~~DiVInaTp~Gm~~~~~~pi~---~~~l~~~~~v~DlvY~P  232 (283)
T 3jyo_A          192 IAAADGVVNATPMGMPAHPGTAFD---VSCLTKDHWVGDVVYMP  232 (283)
T ss_dssp             HHHSSEEEECSSTTSTTSCSCSSC---GGGCCTTCEEEECCCSS
T ss_pred             HhcCCEEEECCCCCCCCCCCCCCC---HHHhCCCCEEEEecCCC
Confidence            7899999998742  11    122   34466777766655443

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=97.38  E-value=0.00041  Score=62.51  Aligned_cols=67  Identities=16%  Similarity=0.204  Sum_probs=49.7

Q ss_pred             CcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCc-hhh---hhhhcCCceee-----C---HHHH-hcCCcEEEEcCCCc
Q psy4626          77 GKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDP-ICA---LQACMDGFSVV-----K---LNEV-IRTVDIVVTATGNK  143 (542)
Q Consensus        77 GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp-~r~---~~A~~~G~~v~-----~---l~e~-l~~aDvVi~atG~~  143 (542)
                      .++++|+|+|.+|+.+++.|...|.+|+++|.++ .+.   ......|+.++     +   +.++ +.++|+|+.+++..
T Consensus         3 ~~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~d   82 (153)
T 1id1_A            3 KDHFIVCGHSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAILALSDND   82 (153)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTCSEEEECSSCH
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEECCChHHHHHHHHhhcCCCeEEEcCCCCHHHHHHcChhhCCEEEEecCCh
Confidence            5679999999999999999999999999999985 322   12223455543     1   2333 67899999998754

>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa}

Probab=97.36  E-value=0.0005  Score=78.76  Aligned_cols=90  Identities=18%  Similarity=0.293  Sum_probs=69.1

Q ss_pred             cccCcEEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce-ee-----CHHHHh------cCCcEEEEcC
Q psy4626          74 MFGGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VV-----KLNEVI------RTVDIVVTAT  140 (542)
Q Consensus        74 ~l~GktVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~-v~-----~l~e~l------~~aDvVi~at  140 (542)
                      ..+|++|+|.|. |.||+..++.++.+|++|+++..++ +.. ....|.+ +.     ++.+.+      +++|+|+++.
T Consensus       343 l~~G~~VLI~gaaGgvG~~aiqlAk~~Ga~V~~t~~~~-k~~-~l~lga~~v~~~~~~~~~~~i~~~t~g~GvDvVld~~  420 (795)
T 3slk_A          343 LRPGESLLVHSAAGGVGMAAIQLARHLGAEVYATASED-KWQ-AVELSREHLASSRTCDFEQQFLGATGGRGVDVVLNSL  420 (795)
T ss_dssp             CCTTCCEEEESTTBHHHHHHHHHHHHTTCCEEEECCGG-GGG-GSCSCGGGEECSSSSTHHHHHHHHSCSSCCSEEEECC
T ss_pred             CCCCCEEEEecCCCHHHHHHHHHHHHcCCEEEEEeChH-Hhh-hhhcChhheeecCChhHHHHHHHHcCCCCeEEEEECC
Confidence            468999999996 9999999999999999999998655 333 2235654 22     222222      4799999998


Q ss_pred             CCcccCCHHHHhccCCCeEEEeccCCC
Q psy4626         141 GNKNVVTREHMDKMKNGCVVCNMGHSN  167 (542)
Q Consensus       141 G~~~lI~~e~l~~mk~GailvnvG~g~  167 (542)
                      |. ..+ .+.++.++++++++.+|..+
T Consensus       421 gg-~~~-~~~l~~l~~~Gr~v~iG~~~  445 (795)
T 3slk_A          421 AG-EFA-DASLRMLPRGGRFLELGKTD  445 (795)
T ss_dssp             CT-TTT-HHHHTSCTTCEEEEECCSTT
T ss_pred             Cc-HHH-HHHHHHhcCCCEEEEecccc
Confidence            76 345 57899999999999999764

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}

Probab=97.35  E-value=0.00081  Score=67.89  Aligned_cols=101  Identities=17%  Similarity=0.190  Sum_probs=69.5

Q ss_pred             HHHHHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCCC-EEEEEeCCchhhhhhhcCCceeeCHHHH--hcCCcEEE
Q psy4626          61 ESIIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMDGFSVVKLNEV--IRTVDIVV  137 (542)
Q Consensus        61 ~s~~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga-~Viv~d~dp~r~~~A~~~G~~v~~l~e~--l~~aDvVi  137 (542)
                      .+++.++.+. +..+.|++++|+|+|.+|+.++..|...|+ +|+++++++.++... ...+...+.+++  + ++|+||
T Consensus       107 ~G~~~~L~~~-~~~~~~k~vlvlGaGGaaraia~~L~~~G~~~v~v~nRt~~ka~~L-a~~~~~~~~~~l~~l-~~DivI  183 (282)
T 3fbt_A          107 IGFGKMLSKF-RVEIKNNICVVLGSGGAARAVLQYLKDNFAKDIYVVTRNPEKTSEI-YGEFKVISYDELSNL-KGDVII  183 (282)
T ss_dssp             HHHHHHHHHT-TCCCTTSEEEEECSSTTHHHHHHHHHHTTCSEEEEEESCHHHHHHH-CTTSEEEEHHHHTTC-CCSEEE
T ss_pred             HHHHHHHHHc-CCCccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHH-HHhcCcccHHHHHhc-cCCEEE
Confidence            3344455443 456789999999999999999999999999 999999999876432 223333333322  4 899999


Q ss_pred             EcCCC--cc-----cCCHHHHhccCCCeEEEeccCCC
Q psy4626         138 TATGN--KN-----VVTREHMDKMKNGCVVCNMGHSN  167 (542)
Q Consensus       138 ~atG~--~~-----lI~~e~l~~mk~GailvnvG~g~  167 (542)
                      +||..  .+     .+.   .+.++++.+++.+.-.+
T Consensus       184 naTp~Gm~~~~~~~pi~---~~~l~~~~~v~DlvY~P  217 (282)
T 3fbt_A          184 NCTPKGMYPKEGESPVD---KEVVAKFSSAVDLIYNP  217 (282)
T ss_dssp             ECSSTTSTTSTTCCSSC---HHHHTTCSEEEESCCSS
T ss_pred             ECCccCccCCCccCCCC---HHHcCCCCEEEEEeeCC
Confidence            98832  11     132   33457788877776544

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=97.35  E-value=0.00054  Score=69.93  Aligned_cols=87  Identities=21%  Similarity=0.223  Sum_probs=65.4

Q ss_pred             CcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCC-----------cee-eCHHHHhcCCcEEEEcCCCcc
Q psy4626          77 GKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDG-----------FSV-VKLNEVIRTVDIVVTATGNKN  144 (542)
Q Consensus        77 GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G-----------~~v-~~l~e~l~~aDvVi~atG~~~  144 (542)
                      -.+++|+|+|.+|..+|..|...|.+|+++++++.+.......|           ..+ .++++ +..+|+||.|+... 
T Consensus        14 ~~kI~iIG~G~mG~ala~~L~~~G~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~-~~~aDvVil~vk~~-   91 (335)
T 1z82_A           14 EMRFFVLGAGSWGTVFAQMLHENGEEVILWARRKEIVDLINVSHTSPYVEESKITVRATNDLEE-IKKEDILVIAIPVQ-   91 (335)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHSCBTTBTTCCCCSEEESCGGG-CCTTEEEEECSCGG-
T ss_pred             CCcEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhCCcccCCCCeeeEEEeCCHHH-hcCCCEEEEECCHH-
Confidence            45899999999999999999999999999999887654333333           232 35666 88999999998653 


Q ss_pred             cCCHHHHhccC-CCeEEEeccCC
Q psy4626         145 VVTREHMDKMK-NGCVVCNMGHS  166 (542)
Q Consensus       145 lI~~e~l~~mk-~GailvnvG~g  166 (542)
                      .+ .+.++.++ ++.+++++.-+
T Consensus        92 ~~-~~v~~~l~~~~~~vv~~~nG  113 (335)
T 1z82_A           92 YI-REHLLRLPVKPSMVLNLSKG  113 (335)
T ss_dssp             GH-HHHHTTCSSCCSEEEECCCC
T ss_pred             HH-HHHHHHhCcCCCEEEEEeCC
Confidence            33 35666665 67788877644

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=97.35  E-value=0.00057  Score=73.28  Aligned_cols=90  Identities=20%  Similarity=0.257  Sum_probs=68.2

Q ss_pred             CcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhc-------------------CC-ce-eeCHHHHhcCCcE
Q psy4626          77 GKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACM-------------------DG-FS-VVKLNEVIRTVDI  135 (542)
Q Consensus        77 GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~-------------------~G-~~-v~~l~e~l~~aDv  135 (542)
                      .-+++|+|.|.+|..+|..|...|.+|++||+++.+......                   .| .. ..++.+++++||+
T Consensus         8 ~~~~~vIGlG~vG~~~A~~La~~G~~V~~~D~~~~kv~~l~~g~~~~~epgl~~~~~~~~~~g~l~~ttd~~ea~~~aDv   87 (446)
T 4a7p_A            8 SVRIAMIGTGYVGLVSGACFSDFGHEVVCVDKDARKIELLHQNVMPIYEPGLDALVASNVKAGRLSFTTDLAEGVKDADA   87 (446)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHTTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHTTCSE
T ss_pred             ceEEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHhcCCCCccCCCHHHHHHhhcccCCEEEECCHHHHHhcCCE
Confidence            348999999999999999999999999999999987653222                   11 23 2456788899999


Q ss_pred             EEEcCCCccc----------CC---HHHHhccCCCeEEEeccCC
Q psy4626         136 VVTATGNKNV----------VT---REHMDKMKNGCVVCNMGHS  166 (542)
Q Consensus       136 Vi~atG~~~l----------I~---~e~l~~mk~GailvnvG~g  166 (542)
                      ||.|.+++.-          +.   ....+.+++|.++++.+.-
T Consensus        88 vii~Vptp~~~~~~~~Dl~~v~~v~~~i~~~l~~g~iVV~~STv  131 (446)
T 4a7p_A           88 VFIAVGTPSRRGDGHADLSYVFAAAREIAENLTKPSVIVTKSTV  131 (446)
T ss_dssp             EEECCCCCBCTTTCCBCTHHHHHHHHHHHHSCCSCCEEEECSCC
T ss_pred             EEEEcCCCCccccCCccHHHHHHHHHHHHHhcCCCCEEEEeCCC
Confidence            9999776531          21   2345678999999987743

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=97.35  E-value=0.00045  Score=74.64  Aligned_cols=89  Identities=17%  Similarity=0.208  Sum_probs=66.2

Q ss_pred             CcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcC-------C-------------ce-eeCHHHHhcCCcE
Q psy4626          77 GKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMD-------G-------------FS-VVKLNEVIRTVDI  135 (542)
Q Consensus        77 GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~-------G-------------~~-v~~l~e~l~~aDv  135 (542)
                      ..+|+|+|.|.+|..+|..|...|.+|+++|+++.+.......       |             .. ..+++++++.+|+
T Consensus         8 ~~~I~VIG~G~vG~~lA~~la~~G~~V~~~d~~~~~v~~l~~~~~~i~e~gl~~~l~~~~~~~~l~~ttd~~~a~~~aDv   87 (478)
T 2y0c_A            8 SMNLTIIGSGSVGLVTGACLADIGHDVFCLDVDQAKIDILNNGGVPIHEPGLKEVIARNRSAGRLRFSTDIEAAVAHGDV   87 (478)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEECCHHHHHHHCSE
T ss_pred             CceEEEECcCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHHhcccCCEEEECCHHHHhhcCCE
Confidence            4689999999999999999999999999999998776543222       2             12 2245567889999


Q ss_pred             EEEcCCCc---------ccCC---HHHHhccCCCeEEEeccC
Q psy4626         136 VVTATGNK---------NVVT---REHMDKMKNGCVVCNMGH  165 (542)
Q Consensus       136 Vi~atG~~---------~lI~---~e~l~~mk~GailvnvG~  165 (542)
                      ||.|.+++         ..+.   .+..+.++++.++++.+.
T Consensus        88 viiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~~~iVV~~ST  129 (478)
T 2y0c_A           88 QFIAVGTPPDEDGSADLQYVLAAARNIGRYMTGFKVIVDKST  129 (478)
T ss_dssp             EEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEECSC
T ss_pred             EEEEeCCCcccCCCccHHHHHHHHHHHHHhcCCCCEEEEeCC
Confidence            99998774         1221   223346889999998764

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=97.34  E-value=0.00029  Score=76.30  Aligned_cols=87  Identities=16%  Similarity=0.281  Sum_probs=63.6

Q ss_pred             cEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhc-----------CCc-------------e-eeCHHHHhcC
Q psy4626          78 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACM-----------DGF-------------S-VVKLNEVIRT  132 (542)
Q Consensus        78 ktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~-----------~G~-------------~-v~~l~e~l~~  132 (542)
                      ++|+|||.|.+|.++|+.+...|.+|+++|+++.+...+..           .|.             . ..++ +.+++
T Consensus         6 ~kVgVIGaG~MG~~IA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~   84 (483)
T 3mog_A            6 QTVAVIGSGTMGAGIAEVAASHGHQVLLYDISAEALTRAIDGIHARLNSRVTRGKLTAETCERTLKRLIPVTDI-HALAA   84 (483)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHTTTTTTSSCHHHHHHHHHTEEEECCG-GGGGG
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceeEeCCH-HHhcC
Confidence            57999999999999999999999999999999987654322           231             1 2234 35789


Q ss_pred             CcEEEEcCCCc-----ccCCHHHHhccCCCeEEE-eccCC
Q psy4626         133 VDIVVTATGNK-----NVVTREHMDKMKNGCVVC-NMGHS  166 (542)
Q Consensus       133 aDvVi~atG~~-----~lI~~e~l~~mk~Gailv-nvG~g  166 (542)
                      ||+||+|....     .++ .+..+.++++++++ |++.-
T Consensus        85 aDlVIeAVpe~~~vk~~v~-~~l~~~~~~~~IlasntSti  123 (483)
T 3mog_A           85 ADLVIEAASERLEVKKALF-AQLAEVCPPQTLLTTNTSSI  123 (483)
T ss_dssp             CSEEEECCCCCHHHHHHHH-HHHHHHSCTTCEEEECCSSS
T ss_pred             CCEEEEcCCCcHHHHHHHH-HHHHHhhccCcEEEecCCCC
Confidence            99999997543     122 23445679999985 66643

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=97.33  E-value=0.00077  Score=72.91  Aligned_cols=90  Identities=17%  Similarity=0.051  Sum_probs=66.2

Q ss_pred             CcEEEEEcCChhHHHHHHHHHhC-CC-EEEEEeCCch----hhhhhhc---------------------CC-ceeeCHHH
Q psy4626          77 GKQVVLCGYGEVGKGCCQSLKGL-GC-VIYITEIDPI----CALQACM---------------------DG-FSVVKLNE  128 (542)
Q Consensus        77 GktVvViG~G~IG~~vA~~l~~~-Ga-~Viv~d~dp~----r~~~A~~---------------------~G-~~v~~l~e  128 (542)
                      -++|+|+|.|.+|..+|..+... |. +|+++|+++.    +......                     .| ....+..+
T Consensus        18 ~mkIaVIGlG~mG~~lA~~la~~~G~~~V~~~D~~~~~~~~kv~~l~~g~~~i~~~e~gl~~l~~~~~~~g~l~~ttd~e   97 (478)
T 3g79_A           18 IKKIGVLGMGYVGIPAAVLFADAPCFEKVLGFQRNSKSSGYKIEMLNRGESPLKGEEPGLEELIGKVVKAGKFECTPDFS   97 (478)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHSTTCCEEEEECCCCTTTTTHHHHHTTTCCCSSCCGGGHHHHHHHHHHTTCEEEESCGG
T ss_pred             CCEEEEECcCHHHHHHHHHHHHhCCCCeEEEEECChhHhHHHHHHHHhcCCCccccCCCHHHHHHhhcccCCeEEeCcHH
Confidence            46899999999999999999999 99 9999999998    5432211                     12 22223356


Q ss_pred             HhcCCcEEEEcCCCcccC------C--------HHHHhccCCCeEEEeccCC
Q psy4626         129 VIRTVDIVVTATGNKNVV------T--------REHMDKMKNGCVVCNMGHS  166 (542)
Q Consensus       129 ~l~~aDvVi~atG~~~lI------~--------~e~l~~mk~GailvnvG~g  166 (542)
                      ++++||+||.|.+++...      +        ....+.+++|.++++.+.-
T Consensus        98 a~~~aDvViiaVptp~~~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv  149 (478)
T 3g79_A           98 RISELDAVTLAIQTPFANPKDLEPDFSALIDGIRNVGKYLKPGMLVVLESTI  149 (478)
T ss_dssp             GGGGCSEEEECCCCCCCSSCCSSCCCHHHHHHHHHHHHHCCTTCEEEECSCC
T ss_pred             HHhcCCEEEEecCCchhccCCccccHHHHHHHHHHHHhhcCCCcEEEEeCCC
Confidence            788999999998775311      0        2345668999999987754

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=97.31  E-value=0.00031  Score=73.04  Aligned_cols=90  Identities=9%  Similarity=0.061  Sum_probs=66.0

Q ss_pred             CcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCC--------------ce-eeCHHHHhcCCcEEEEcCC
Q psy4626          77 GKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDG--------------FS-VVKLNEVIRTVDIVVTATG  141 (542)
Q Consensus        77 GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G--------------~~-v~~l~e~l~~aDvVi~atG  141 (542)
                      -.+|+|+|+|.+|..+|..|...|.+|.+|++++.+.......+              .. ..+++++++++|+||.++.
T Consensus        29 ~mkI~VIGaG~mG~alA~~La~~G~~V~l~~r~~~~~~~i~~~~~~~~~l~g~~l~~~i~~t~d~~ea~~~aDvVilaVp  108 (356)
T 3k96_A           29 KHPIAILGAGSWGTALALVLARKGQKVRLWSYESDHVDEMQAEGVNNRYLPNYPFPETLKAYCDLKASLEGVTDILIVVP  108 (356)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHSSBTTTBTTCCCCTTEEEESCHHHHHTTCCEEEECCC
T ss_pred             CCeEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCCcccCCCCccCCCeEEECCHHHHHhcCCEEEECCC
Confidence            35899999999999999999999999999999987654332222              12 2356788899999999976


Q ss_pred             CcccCC--HHHHhccCCCeEEEeccCC
Q psy4626         142 NKNVVT--REHMDKMKNGCVVCNMGHS  166 (542)
Q Consensus       142 ~~~lI~--~e~l~~mk~GailvnvG~g  166 (542)
                      ...+-.  .+....++++.+++++.-|
T Consensus       109 ~~~~~~vl~~i~~~l~~~~ivvs~~kG  135 (356)
T 3k96_A          109 SFAFHEVITRMKPLIDAKTRIAWGTKG  135 (356)
T ss_dssp             HHHHHHHHHHHGGGCCTTCEEEECCCS
T ss_pred             HHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence            432210  2333457789999887655

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*

Probab=97.27  E-value=0.00059  Score=69.86  Aligned_cols=104  Identities=18%  Similarity=0.151  Sum_probs=67.1

Q ss_pred             HHHHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCCC-EEEEEeCC---chhhhhh-h----cCCc--eeeC---H-
Q psy4626          62 SIIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEID---PICALQA-C----MDGF--SVVK---L-  126 (542)
Q Consensus        62 s~~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga-~Viv~d~d---p~r~~~A-~----~~G~--~v~~---l-  126 (542)
                      +++.++.+. +..+.|++++|+|+|.+|+.++..|...|+ +|++++++   +.++.+. .    ..+.  .+.+   + 
T Consensus       134 Gf~~~L~~~-~~~l~gk~~lVlGAGGaaraia~~L~~~G~~~v~v~nRt~~~~~~a~~la~~~~~~~~~~v~~~~~~~l~  212 (312)
T 3t4e_A          134 GHIRAIKES-GFDMRGKTMVLLGAGGAATAIGAQAAIEGIKEIKLFNRKDDFFEKAVAFAKRVNENTDCVVTVTDLADQH  212 (312)
T ss_dssp             HHHHHHHHT-TCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTHHHHHHHHHHHHHHHSSCEEEEEETTCHH
T ss_pred             HHHHHHHhc-CCCcCCCEEEEECcCHHHHHHHHHHHHcCCCEEEEEECCCchHHHHHHHHHHhhhccCcceEEechHhhh
Confidence            344455443 456789999999999999999999999999 89999999   5554321 1    1122  2222   2 


Q ss_pred             --HHHhcCCcEEEEcCCCcccC--CHH----HHhccCCCeEEEeccCCC
Q psy4626         127 --NEVIRTVDIVVTATGNKNVV--TRE----HMDKMKNGCVVCNMGHSN  167 (542)
Q Consensus       127 --~e~l~~aDvVi~atG~~~lI--~~e----~l~~mk~GailvnvG~g~  167 (542)
                        .+.+.++|+||+||.. ++-  ...    ..+.++++.++..+--.+
T Consensus       213 ~~~~~l~~~DiIINaTp~-Gm~~~~~~~~~~~~~~l~~~~~v~D~vY~P  260 (312)
T 3t4e_A          213 AFTEALASADILTNGTKV-GMKPLENESLIGDVSLLRPELLVTECVYNP  260 (312)
T ss_dssp             HHHHHHHHCSEEEECSST-TSTTSTTCCSCCCGGGSCTTCEEEECCCSS
T ss_pred             hhHhhccCceEEEECCcC-CCCCCCCCcccCCHHHcCCCCEEEEeccCC
Confidence              3456789999998742 110  000    123456666666655443

>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6

Probab=97.26  E-value=0.00031  Score=75.90  Aligned_cols=89  Identities=8%  Similarity=0.123  Sum_probs=66.6

Q ss_pred             EEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhc-CC-------ce-eeCHHHHhc---CCcEEEEcCCCcccC
Q psy4626          79 QVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACM-DG-------FS-VVKLNEVIR---TVDIVVTATGNKNVV  146 (542)
Q Consensus        79 tVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~-~G-------~~-v~~l~e~l~---~aDvVi~atG~~~lI  146 (542)
                      +|+|+|+|.+|..+|..+...|.+|.++|+++.+...... .|       .. ..++++++.   .+|+||.++.....+
T Consensus         3 kIgVIG~G~mG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~g~~~~~~~i~~~~~~~e~v~~l~~aDvVilaVp~~~~v   82 (478)
T 1pgj_A            3 DVGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFAASLKKPRKALILVQAGAAT   82 (478)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSTTGGGEEECSCHHHHHHHBCSSCEEEECCCCSHHH
T ss_pred             EEEEEChHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcCCCCCCCCeEEECCHHHHHhcccCCCEEEEecCChHHH
Confidence            6999999999999999999999999999999877654332 24       33 346777765   599999987653222


Q ss_pred             C---HHHHhccCCCeEEEeccCCC
Q psy4626         147 T---REHMDKMKNGCVVCNMGHSN  167 (542)
Q Consensus       147 ~---~e~l~~mk~GailvnvG~g~  167 (542)
                      .   .+....+++|.++++++.+.
T Consensus        83 ~~vl~~l~~~l~~g~iIId~sng~  106 (478)
T 1pgj_A           83 DSTIEQLKKVFEKGDILVDTGNAH  106 (478)
T ss_dssp             HHHHHHHHHHCCTTCEEEECCCCC
T ss_pred             HHHHHHHHhhCCCCCEEEECCCCC
Confidence            1   23445678999999988764

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=97.25  E-value=0.00038  Score=67.04  Aligned_cols=88  Identities=14%  Similarity=0.159  Sum_probs=64.1

Q ss_pred             CcEEEEEcCChhHHHHHHHHHhCCCEEEE-EeCCchhhhhh-hcCCce-eeCHHHHhcCCcEEEEcCCCcccCCHHHHhc
Q psy4626          77 GKQVVLCGYGEVGKGCCQSLKGLGCVIYI-TEIDPICALQA-CMDGFS-VVKLNEVIRTVDIVVTATGNKNVVTREHMDK  153 (542)
Q Consensus        77 GktVvViG~G~IG~~vA~~l~~~Ga~Viv-~d~dp~r~~~A-~~~G~~-v~~l~e~l~~aDvVi~atG~~~lI~~e~l~~  153 (542)
                      -.+++|+|+|.+|..+|..+...|.+|++ +++++.+.... ...|.. ..+..+.+.++|+||.|+.. ..+ .+.++.
T Consensus        23 mmkI~IIG~G~mG~~la~~l~~~g~~V~~v~~r~~~~~~~l~~~~g~~~~~~~~~~~~~aDvVilavp~-~~~-~~v~~~  100 (220)
T 4huj_A           23 MTTYAIIGAGAIGSALAERFTAAQIPAIIANSRGPASLSSVTDRFGASVKAVELKDALQADVVILAVPY-DSI-ADIVTQ  100 (220)
T ss_dssp             SCCEEEEECHHHHHHHHHHHHHTTCCEEEECTTCGGGGHHHHHHHTTTEEECCHHHHTTSSEEEEESCG-GGH-HHHHTT
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCCHHHHHHHHHHhCCCcccChHHHHhcCCEEEEeCCh-HHH-HHHHHH
Confidence            36899999999999999999999999999 99998876542 333543 23445567899999999753 233 345555


Q ss_pred             cC--CCeEEEeccCC
Q psy4626         154 MK--NGCVVCNMGHS  166 (542)
Q Consensus       154 mk--~GailvnvG~g  166 (542)
                      ++  ++.+++++..+
T Consensus       101 l~~~~~~ivi~~~~g  115 (220)
T 4huj_A          101 VSDWGGQIVVDASNA  115 (220)
T ss_dssp             CSCCTTCEEEECCCC
T ss_pred             hhccCCCEEEEcCCC
Confidence            42  57788877744

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=97.23  E-value=0.00098  Score=71.16  Aligned_cols=92  Identities=16%  Similarity=0.172  Sum_probs=64.7

Q ss_pred             ccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCcee--eCHHHH---------------hcCCcEEE
Q psy4626          75 FGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV--VKLNEV---------------IRTVDIVV  137 (542)
Q Consensus        75 l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v--~~l~e~---------------l~~aDvVi  137 (542)
                      -.|.++-|+|.|.+|..+|..|...|.+|+++|+|+.+...........  ..++++               +++||+||
T Consensus         9 ~~~~~~~ViGlGyvGlp~A~~La~~G~~V~~~D~~~~kv~~L~~g~~pi~epgl~~ll~~~~~~g~l~~ttd~~~aDvvi   88 (431)
T 3ojo_A            9 HHGSKLTVVGLGYIGLPTSIMFAKHGVDVLGVDINQQTIDKLQNGQISIEEPGLQEVYEEVLSSGKLKVSTTPEASDVFI   88 (431)
T ss_dssp             ---CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESSCCCCSEEE
T ss_pred             ccCCccEEEeeCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHhhcccCceEEeCchhhCCEEE
Confidence            3688999999999999999999999999999999998765432211111  111211               35799999


Q ss_pred             EcCCCcccCC--------------HHHHhccCCCeEEEeccCC
Q psy4626         138 TATGNKNVVT--------------REHMDKMKNGCVVCNMGHS  166 (542)
Q Consensus       138 ~atG~~~lI~--------------~e~l~~mk~GailvnvG~g  166 (542)
                      .|.+++.-.+              ....+.+++|.++++.+.-
T Consensus        89 i~VpTp~~~~~~~~~Dl~~V~~~~~~i~~~l~~g~iVV~~STV  131 (431)
T 3ojo_A           89 IAVPTPNNDDQYRSCDISLVMRALDSILPFLKKGNTIIVESTI  131 (431)
T ss_dssp             ECCCCCBCSSSSCBBCCHHHHHHHHHHGGGCCTTEEEEECSCC
T ss_pred             EEeCCCccccccCCccHHHHHHHHHHHHHhCCCCCEEEEecCC
Confidence            9988765211              2345568999999987754

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=97.22  E-value=0.00049  Score=74.00  Aligned_cols=84  Identities=25%  Similarity=0.316  Sum_probs=60.1

Q ss_pred             cEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhc-----------CC-----------cee-eCHHHHhcCCc
Q psy4626          78 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACM-----------DG-----------FSV-VKLNEVIRTVD  134 (542)
Q Consensus        78 ktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~-----------~G-----------~~v-~~l~e~l~~aD  134 (542)
                      ++|+|||+|.+|.++|..+...|.+|+++|+++.+...+..           .|           ..+ .++ +.+++||
T Consensus        38 ~kV~VIGaG~MG~~iA~~la~~G~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~-~~~~~aD  116 (463)
T 1zcj_A           38 SSVGVLGLGTMGRGIAISFARVGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSSST-KELSTVD  116 (463)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEEESCG-GGGTTCS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhhcCCH-HHHCCCC
Confidence            58999999999999999999999999999999876543321           01           112 234 5678999


Q ss_pred             EEEEcCCCcccCC----HHHHhccCCCeEEEe
Q psy4626         135 IVVTATGNKNVVT----REHMDKMKNGCVVCN  162 (542)
Q Consensus       135 vVi~atG~~~lI~----~e~l~~mk~Gailvn  162 (542)
                      +||+|+....-+.    .+.-..+++++++++
T Consensus       117 lVIeaVpe~~~~k~~v~~~l~~~~~~~~ii~s  148 (463)
T 1zcj_A          117 LVVEAVFEDMNLKKKVFAELSALCKPGAFLCT  148 (463)
T ss_dssp             EEEECCCSCHHHHHHHHHHHHHHSCTTCEEEE
T ss_pred             EEEEcCCCCHHHHHHHHHHHHhhCCCCeEEEe
Confidence            9999986421111    223345789998885

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=97.19  E-value=0.00052  Score=67.03  Aligned_cols=91  Identities=18%  Similarity=0.255  Sum_probs=63.8

Q ss_pred             ccccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhh--hhcCCceeeC--H-HHHhcCCcEEEEcCCCcccCC
Q psy4626          73 VMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQ--ACMDGFSVVK--L-NEVIRTVDIVVTATGNKNVVT  147 (542)
Q Consensus        73 ~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~--A~~~G~~v~~--l-~e~l~~aDvVi~atG~~~lI~  147 (542)
                      ..+.|++|+|+|.|.+|...++.|...|++|+|++.+.....+  +...+.....  . ++-+.++|+||.+|+.+. +|
T Consensus        27 l~L~gk~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~~~~~l~~l~~~~~i~~i~~~~~~~dL~~adLVIaAT~d~~-~N  105 (223)
T 3dfz_A           27 LDLKGRSVLVVGGGTIATRRIKGFLQEGAAITVVAPTVSAEINEWEAKGQLRVKRKKVGEEDLLNVFFIVVATNDQA-VN  105 (223)
T ss_dssp             ECCTTCCEEEECCSHHHHHHHHHHGGGCCCEEEECSSCCHHHHHHHHTTSCEEECSCCCGGGSSSCSEEEECCCCTH-HH
T ss_pred             EEcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHcCCcEEEECCCCHhHhCCCCEEEECCCCHH-HH
Confidence            4578999999999999999999999999999999865533221  2222333321  1 345789999999998764 45


Q ss_pred             HHHHhccCCCeEEEeccC
Q psy4626         148 REHMDKMKNGCVVCNMGH  165 (542)
Q Consensus       148 ~e~l~~mk~GailvnvG~  165 (542)
                      .......+ -++.+|+.-
T Consensus       106 ~~I~~~ak-~gi~VNvvD  122 (223)
T 3dfz_A          106 KFVKQHIK-NDQLVNMAS  122 (223)
T ss_dssp             HHHHHHSC-TTCEEEC--
T ss_pred             HHHHHHHh-CCCEEEEeC
Confidence            44444455 778888763

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=97.19  E-value=0.00064  Score=71.67  Aligned_cols=84  Identities=15%  Similarity=0.139  Sum_probs=61.9

Q ss_pred             EEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCc------------------ee-eCHHHHhcCCcEEEEc
Q psy4626          79 QVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGF------------------SV-VKLNEVIRTVDIVVTA  139 (542)
Q Consensus        79 tVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~------------------~v-~~l~e~l~~aDvVi~a  139 (542)
                      +|+|+|.|.+|..+|..|.. |.+|+++|+++.+.......+.                  .. .++.++++.+|+||.|
T Consensus         2 kI~VIG~G~vG~~~A~~La~-G~~V~~~d~~~~~~~~l~~~~~~i~e~~l~~~~~~~~~~l~~t~~~~~~~~~aDvviia   80 (402)
T 1dlj_A            2 KIAVAGSGYVGLSLGVLLSL-QNEVTIVDILPSKVDKINNGLSPIQDEYIEYYLKSKQLSIKATLDSKAAYKEAELVIIA   80 (402)
T ss_dssp             EEEEECCSHHHHHHHHHHTT-TSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHHHCSEEEEC
T ss_pred             EEEEECCCHHHHHHHHHHhC-CCEEEEEECCHHHHHHHHcCCCCcCCCCHHHHHHhccCcEEEeCCHHHHhcCCCEEEEe
Confidence            69999999999999999988 9999999999987654433332                  22 2456778899999999


Q ss_pred             CCCcc----------cCC---HHHHhccCCCeEEEecc
Q psy4626         140 TGNKN----------VVT---REHMDKMKNGCVVCNMG  164 (542)
Q Consensus       140 tG~~~----------lI~---~e~l~~mk~GailvnvG  164 (542)
                      ++++.          .+.   .+... ++++.+++..+
T Consensus        81 vpt~~~~~~~~~dl~~v~~v~~~i~~-l~~~~iVV~~S  117 (402)
T 1dlj_A           81 TPTNYNSRINYFDTQHVETVIKEVLS-VNSHATLIIKS  117 (402)
T ss_dssp             CCCCEETTTTEECCHHHHHHHHHHHH-HCSSCEEEECS
T ss_pred             cCCCcccCCCCccHHHHHHHHHHHHh-hCCCCEEEEeC
Confidence            87752          121   12334 78899888633

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=97.18  E-value=0.00067  Score=70.96  Aligned_cols=218  Identities=17%  Similarity=0.152  Sum_probs=113.7

Q ss_pred             HHHHHHHhCCCEEEEEeCCc-----hhhhhhhcCCceee-CHHHHhcCCcEEEEcCCCcccCCHHHHhccCCCeEEEecc
Q psy4626          91 GCCQSLKGLGCVIYITEIDP-----ICALQACMDGFSVV-KLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMG  164 (542)
Q Consensus        91 ~vA~~l~~~Ga~Viv~d~dp-----~r~~~A~~~G~~v~-~l~e~l~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG  164 (542)
                      ..++.|...|.+|++ +...     +...+....|+.++ +.++.+.++|+|+..   +..+ .+.+..+++|..++...
T Consensus        21 ~~v~~L~~~G~~V~v-e~~ag~~~~f~d~~y~~aGa~i~~~~~~~~~~adii~~v---k~p~-~~e~~~l~~~~~l~~~~   95 (377)
T 2vhw_A           21 AGVAELTRRGHEVLI-QAGAGEGSAITDADFKAAGAQLVGTADQVWADADLLLKV---KEPI-AAEYGRLRHGQILFTFL   95 (377)
T ss_dssp             HHHHHHHHTTCEEEE-ETTTTGGGTCCHHHHHHHTCEEESCHHHHHHHCSEEECS---SCCC-GGGGGGCCTTCEEEECC
T ss_pred             HHHHHHHhCCCEEEE-eCCCCcCCCCCHHHHHHCCCEEecCHHHHhccCCEEEEe---CCCC-hHHHhhcCCCCEEEEEe
Confidence            345677788999865 3222     11122233477655 467888889987532   2223 36777788887766554


Q ss_pred             CC-CcccChHhhcCCCcceeeeccceeeEecCCCCEEEEecCCCcccccCCCChhHHHhhHHHHHHHHHHHHhcCCCC--
Q psy4626         165 HS-NTEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIVLLAEGRLVNLSCSSLPSFVVSITACTQALALIELFNAPSG--  241 (542)
Q Consensus       165 ~g-~~eid~~aL~~~~l~v~~~~~~v~~y~~~dg~~I~LLa~GrLvnl~~~thp~~vmd~sfa~q~la~~~L~~~~~~--  241 (542)
                      +. .+...++++.+++++....+      ..+.       ..|+++.+.    |+--.....+.+.. ..++-....+  
T Consensus        96 ~~~~~~~~l~~l~~~gi~~ia~e------~v~~-------~~~~~p~~s----~~ae~ag~~a~~~a-~r~l~~~~~g~~  157 (377)
T 2vhw_A           96 HLAASRACTDALLDSGTTSIAYE------TVQT-------ADGALPLLA----PMSEVAGRLAAQVG-AYHLMRTQGGRG  157 (377)
T ss_dssp             CGGGCHHHHHHHHHHTCEEEEGG------GCCC-------TTSCCTTTH----HHHHHHHHHHHHHH-HHHTSGGGTSCC
T ss_pred             cccCCHHHHHHHHHcCCeEEEee------eccc-------cCCCccccC----chHHHHHHHHHHHH-HHHHHHhcCCCc
Confidence            32 23344555554334332211      0010       113332211    11101111122222 1222110001  


Q ss_pred             CCCCccccCChhhHHHHHHhcCCcccc----ccccccHHHHhhcCCC----CCCCCCCCccc-cCCee-------eeehh
Q psy4626         242 RYKSDVYLLPKKMDEYVASLHLPTFDA----HLTELSDEQAKYMGLN----KAGPFKPSYYS-MDGFS-------VVKLN  305 (542)
Q Consensus       242 ~~~~gv~~lp~~~d~~VA~l~L~~lg~----~i~~lt~~~a~~lg~~----e~~p~~a~ea~-mdG~~-------v~~~~  305 (542)
                      .|..++..           +..++.++    .++....+.++.+|+.    +.+|.+.-++. +-|..       ..+++
T Consensus       158 ~~~~~~~~-----------l~g~~V~ViG~G~iG~~~a~~a~~~Ga~V~~~d~~~~~l~~~~~~~g~~~~~~~~~~~~l~  226 (377)
T 2vhw_A          158 VLMGGVPG-----------VEPADVVVIGAGTAGYNAARIANGMGATVTVLDINIDKLRQLDAEFCGRIHTRYSSAYELE  226 (377)
T ss_dssp             CCTTCBTT-----------BCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTTSSEEEECCHHHHH
T ss_pred             ccccCCCC-----------CCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhcCCeeEeccCCHHHHH
Confidence            12222211           22333333    8888889999999983    23333321111 11221       12467


Q ss_pred             hhcccCcEEEEccCCC-----CccCHhHHhcCCCCcEEEccC
Q psy4626         306 EVIRTVDIVVTATGNK-----NVVTREHMDKMKNGCVVCNMG  342 (542)
Q Consensus       306 ~a~~~~d~~~t~tg~~-----~vi~~~~~~~mk~gail~n~g  342 (542)
                      ++++.+|+||.++|..     .+|+.+.++.||+|++++|+|
T Consensus       227 ~~l~~aDvVi~~~~~p~~~t~~li~~~~l~~mk~g~~iV~va  268 (377)
T 2vhw_A          227 GAVKRADLVIGAVLVPGAKAPKLVSNSLVAHMKPGAVLVDIA  268 (377)
T ss_dssp             HHHHHCSEEEECCCCTTSCCCCCBCHHHHTTSCTTCEEEEGG
T ss_pred             HHHcCCCEEEECCCcCCCCCcceecHHHHhcCCCCcEEEEEe
Confidence            8889999999988654     578999999999999999999

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=97.15  E-value=0.00056  Score=67.39  Aligned_cols=88  Identities=13%  Similarity=0.086  Sum_probs=61.0

Q ss_pred             EEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcC---Cc----e-eeCHHHHhcCCcEEEEcCCCcccCC--H
Q psy4626          79 QVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMD---GF----S-VVKLNEVIRTVDIVVTATGNKNVVT--R  148 (542)
Q Consensus        79 tVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~---G~----~-v~~l~e~l~~aDvVi~atG~~~lI~--~  148 (542)
                      +|+|+|+|.+|..+|..|...|.+|+++++++.+.......   |.    . ..+..+.++.+|+||.|+....+-.  .
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~v~~~~~~~v~~   81 (291)
T 1ks9_A            2 KITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPYCSVNLVETDGSIFNESLTANDPDFLATSDLLLVTLKAWQVSDAVK   81 (291)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSEEEEEEECTTSCEEEEEEEESCHHHHHTCSEEEECSCGGGHHHHHH
T ss_pred             eEEEECcCHHHHHHHHHHHhCCCCEEEEEcCccceeeEEEEcCCCceeeeeeeecCccccCCCCEEEEEecHHhHHHHHH
Confidence            69999999999999999999999999999988654322111   21    0 1233456788999999987654311  1


Q ss_pred             HHHhccCCCeEEEeccCC
Q psy4626         149 EHMDKMKNGCVVCNMGHS  166 (542)
Q Consensus       149 e~l~~mk~GailvnvG~g  166 (542)
                      +....++++.+++++..+
T Consensus        82 ~l~~~l~~~~~vv~~~~g   99 (291)
T 1ks9_A           82 SLASTLPVTTPILLIHNG   99 (291)
T ss_dssp             HHHTTSCTTSCEEEECSS
T ss_pred             HHHhhCCCCCEEEEecCC
Confidence            223456778888876544

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=97.12  E-value=0.00056  Score=72.59  Aligned_cols=89  Identities=15%  Similarity=0.244  Sum_probs=65.2

Q ss_pred             CcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceee-----CH---HHH-hcCCcEEEEcCCCcccC-
Q psy4626          77 GKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVV-----KL---NEV-IRTVDIVVTATGNKNVV-  146 (542)
Q Consensus        77 GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~-----~l---~e~-l~~aDvVi~atG~~~lI-  146 (542)
                      +.+|+|+|+|.+|+.+++.|+..|.+|+++|.||.+...+...|+.++     +.   .++ +..+|+||.++++...- 
T Consensus         4 ~~~viIiG~Gr~G~~va~~L~~~g~~vvvId~d~~~v~~~~~~g~~vi~GDat~~~~L~~agi~~A~~viv~~~~~~~n~   83 (413)
T 3l9w_A            4 GMRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQTNL   83 (413)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEECCHHHHHHHHHTTCCCEESCTTCHHHHHHTTTTTCSEEEECCSSHHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHhCCCeEEEcCCCCHHHHHhcCCCccCEEEECCCChHHHH
Confidence            457999999999999999999999999999999998877777787654     22   222 57899999998754221 


Q ss_pred             -CHHHHhccCCCeEEEeccC
Q psy4626         147 -TREHMDKMKNGCVVCNMGH  165 (542)
Q Consensus       147 -~~e~l~~mk~GailvnvG~  165 (542)
                       -....+.+.+...++.-.+
T Consensus        84 ~i~~~ar~~~p~~~Iiara~  103 (413)
T 3l9w_A           84 QLTEMVKEHFPHLQIIARAR  103 (413)
T ss_dssp             HHHHHHHHHCTTCEEEEEES
T ss_pred             HHHHHHHHhCCCCeEEEEEC
Confidence             1234455556655554443

>3aog_A Glutamate dehydrogenase; NAD(H), oxidoreducta; HET: GLU; 2.10A {Thermus thermophilus HB27} PDB: 3aoe_A

Probab=97.10  E-value=0.0027  Score=67.77  Aligned_cols=83  Identities=18%  Similarity=0.336  Sum_probs=59.6

Q ss_pred             cCccccCcEEEEEcCChhHHHHHHHHHhCCCEEE-EEeC----------Cchhhhhhh-cCC-------ceeeCHHHHh-
Q psy4626          71 TDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIY-ITEI----------DPICALQAC-MDG-------FSVVKLNEVI-  130 (542)
Q Consensus        71 ~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Vi-v~d~----------dp~r~~~A~-~~G-------~~v~~l~e~l-  130 (542)
                      .+..+.|++|+|.|+|++|+.+|+.|..+|++|+ +.|.          |+..+.+.. ..|       ...++.++.+ 
T Consensus       229 ~g~~l~g~~vaVqGfGnVG~~~a~~L~e~GakvVavsD~~G~i~dp~Gld~~~l~~~~~~~g~i~~y~~a~~i~~~ei~~  308 (440)
T 3aog_A          229 IGLQVEGARVAIQGFGNVGNAAARAFHDHGARVVAVQDHTGTVYNEAGIDPYDLLRHVQEFGGVRGYPKAEPLPAADFWG  308 (440)
T ss_dssp             HTCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCEEECTTCCCHHHHHHHHHHTSSSTTCTTSEECCHHHHTT
T ss_pred             cCCCccCCEEEEeccCHHHHHHHHHHHHCCCEEEEEEcCCcEEECCCCCCHHHHHHHHHhcCCcccCCCceEcCchhhhc
Confidence            3567899999999999999999999999999988 6776          333322211 111       2344556665 


Q ss_pred             cCCcEEEEcCCCcccCCHHHHhcc
Q psy4626         131 RTVDIVVTATGNKNVVTREHMDKM  154 (542)
Q Consensus       131 ~~aDvVi~atG~~~lI~~e~l~~m  154 (542)
                      ..|||++.|+. .+.++.+....+
T Consensus       309 ~~~DIlvPcA~-~n~i~~~na~~l  331 (440)
T 3aog_A          309 LPVEFLVPAAL-EKQITEQNAWRI  331 (440)
T ss_dssp             CCCSEEEECSS-SSCBCTTTGGGC
T ss_pred             CCCcEEEecCC-cCccchhhHHHc
Confidence            47999999863 457776777777

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=97.08  E-value=0.00098  Score=71.97  Aligned_cols=89  Identities=15%  Similarity=0.202  Sum_probs=64.5

Q ss_pred             cEEEEEcCChhHHHHHHHHHhC--CCEEEEEeCCchhhhhhhcC-------------------Ccee-eCHHHHhcCCcE
Q psy4626          78 KQVVLCGYGEVGKGCCQSLKGL--GCVIYITEIDPICALQACMD-------------------GFSV-VKLNEVIRTVDI  135 (542)
Q Consensus        78 ktVvViG~G~IG~~vA~~l~~~--Ga~Viv~d~dp~r~~~A~~~-------------------G~~v-~~l~e~l~~aDv  135 (542)
                      .+|+|||.|.+|..+|..|...  |.+|+++|+++.+.......                   +... .++.++++++|+
T Consensus        10 mkI~VIG~G~vG~~~A~~La~~g~g~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~~~~~~~~~l~~t~~~~~~~~~aDv   89 (481)
T 2o3j_A           10 SKVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMNTAKIAEWNSDKLPIYEPGLDEIVFAARGRNLFFSSDIPKAIAEADL   89 (481)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHHHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEEESCHHHHHHHCSE
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHHhhcCCEEEECCHHHHhhcCCE
Confidence            4899999999999999999877  78999999999876543221                   1222 245677889999


Q ss_pred             EEEcCCCccc--------------CC---HHHHhccCCCeEEEeccCC
Q psy4626         136 VVTATGNKNV--------------VT---REHMDKMKNGCVVCNMGHS  166 (542)
Q Consensus       136 Vi~atG~~~l--------------I~---~e~l~~mk~GailvnvG~g  166 (542)
                      ||.|.+++.-              +.   .+..+.+++|.++++.+..
T Consensus        90 vii~Vptp~~~~g~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv  137 (481)
T 2o3j_A           90 IFISVNTPTKMYGRGKGMAPDLKYVESVSRTIAQYAGGPKIVVEKSTV  137 (481)
T ss_dssp             EEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHHCCSCEEEEECSCC
T ss_pred             EEEecCCccccccccccCCCcHHHHHHHHHHHHHhCCCCCEEEECCCC
Confidence            9999876431              11   1234568899999986543

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=97.07  E-value=0.00078  Score=64.31  Aligned_cols=65  Identities=15%  Similarity=0.118  Sum_probs=51.0

Q ss_pred             EEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhh-hcCCceee-----C---HHHH-hcCCcEEEEcCCCc
Q psy4626          79 QVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQA-CMDGFSVV-----K---LNEV-IRTVDIVVTATGNK  143 (542)
Q Consensus        79 tVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A-~~~G~~v~-----~---l~e~-l~~aDvVi~atG~~  143 (542)
                      +|+|+|+|.+|+.+|+.|...|.+|+++|.++.+.... ...|+.++     +   +.++ +.++|+||.+++..
T Consensus         2 ~iiIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~l~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~d   76 (218)
T 3l4b_C            2 KVIIIGGETTAYYLARSMLSRKYGVVIINKDRELCEEFAKKLKATIIHGDGSHKEILRDAEVSKNDVVVILTPRD   76 (218)
T ss_dssp             CEEEECCHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHSSSEEEESCTTSHHHHHHHTCCTTCEEEECCSCH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHcCCeEEEcCCCCHHHHHhcCcccCCEEEEecCCc
Confidence            68999999999999999999999999999999876543 33455432     1   2233 57899999998764

>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}

Probab=97.06  E-value=0.00079  Score=65.75  Aligned_cols=60  Identities=15%  Similarity=0.239  Sum_probs=49.8

Q ss_pred             CcEEEEEcCChhHHHHHHHHHhCC----CEEEEEeCCchhhhhhhcCCceee-CHHHHhcCCcEEEEcCCC
Q psy4626          77 GKQVVLCGYGEVGKGCCQSLKGLG----CVIYITEIDPICALQACMDGFSVV-KLNEVIRTVDIVVTATGN  142 (542)
Q Consensus        77 GktVvViG~G~IG~~vA~~l~~~G----a~Viv~d~dp~r~~~A~~~G~~v~-~l~e~l~~aDvVi~atG~  142 (542)
                      ..+|+|+|+|.+|..++..+...|    .+|+++|+++.+      .|..+. +..++++.+|+||.|+..
T Consensus         4 ~m~i~iiG~G~mG~~~a~~l~~~g~~~~~~v~~~~~~~~~------~g~~~~~~~~~~~~~~D~vi~~v~~   68 (262)
T 2rcy_A            4 NIKLGFMGLGQMGSALAHGIANANIIKKENLFYYGPSKKN------TTLNYMSSNEELARHCDIIVCAVKP   68 (262)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHHTSSCGGGEEEECSSCCS------SSSEECSCHHHHHHHCSEEEECSCT
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCCCCCeEEEEeCCccc------CceEEeCCHHHHHhcCCEEEEEeCH
Confidence            357999999999999999998888    689999988765      455543 567788899999999863

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=97.04  E-value=0.00086  Score=68.55  Aligned_cols=88  Identities=10%  Similarity=0.118  Sum_probs=62.8

Q ss_pred             CcEEEEEcCChhHHHHHHHHHhCC-------CEEEEEeCCch-----hhhhhhc--------------CCcee-eCHHHH
Q psy4626          77 GKQVVLCGYGEVGKGCCQSLKGLG-------CVIYITEIDPI-----CALQACM--------------DGFSV-VKLNEV  129 (542)
Q Consensus        77 GktVvViG~G~IG~~vA~~l~~~G-------a~Viv~d~dp~-----r~~~A~~--------------~G~~v-~~l~e~  129 (542)
                      .++|+|+|+|.+|..+|..|...|       .+|+++++++.     +......              .+... .+++++
T Consensus         8 ~mkI~iIG~G~mG~~~a~~l~~~g~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (354)
T 1x0v_A            8 SKKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEEDIGGKKLTEIINTQHENVKYLPGHKLPPNVVAVPDVVQA   87 (354)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHCTTEEEEEEEECCCCBSSSSBHHHHHHHHSCCTTTSTTCCCCTTEEEESSHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEcChhhhhhHHHHHHHhcCcccccCCcccCccCeEEEcCHHHH
Confidence            358999999999999999998888       89999999886     4432211              12222 356778


Q ss_pred             hcCCcEEEEcCCCcccCCHHHH----hccCCCeEEEeccCC
Q psy4626         130 IRTVDIVVTATGNKNVVTREHM----DKMKNGCVVCNMGHS  166 (542)
Q Consensus       130 l~~aDvVi~atG~~~lI~~e~l----~~mk~GailvnvG~g  166 (542)
                      ++.+|+||.|+... .+ .+.+    ..++++.+++++..+
T Consensus        88 ~~~aD~Vilav~~~-~~-~~v~~~i~~~l~~~~ivv~~~~G  126 (354)
T 1x0v_A           88 AEDADILIFVVPHQ-FI-GKICDQLKGHLKANATGISLIKG  126 (354)
T ss_dssp             HTTCSEEEECCCGG-GH-HHHHHHHTTCSCTTCEEEECCCC
T ss_pred             HcCCCEEEEeCCHH-HH-HHHHHHHHhhCCCCCEEEEECCc
Confidence            88999999998543 22 2333    346788888887654

>4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1}

Probab=97.02  E-value=0.0012  Score=65.07  Aligned_cols=93  Identities=14%  Similarity=0.248  Sum_probs=63.5

Q ss_pred             cccCcEEEEEcCC-hhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce-----eeCHH---H---HhcCCcEEEEcCC
Q psy4626          74 MFGGKQVVLCGYG-EVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-----VVKLN---E---VIRTVDIVVTATG  141 (542)
Q Consensus        74 ~l~GktVvViG~G-~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~-----v~~l~---e---~l~~aDvVi~atG  141 (542)
                      .+.||+++|.|.+ -||+.+|+.|...|++|+++|+++.....+......     +.+.+   +   .+...|++|.+.|
T Consensus         8 lf~GK~alVTGas~GIG~aia~~la~~Ga~Vv~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~g~iDiLVNNAG   87 (242)
T 4b79_A            8 IYAGQQVLVTGGSSGIGAAIAMQFAELGAEVVALGLDADGVHAPRHPRIRREELDITDSQRLQRLFEALPRLDVLVNNAG   87 (242)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTSTTSCCCTTEEEEECCTTCHHHHHHHHHHCSCCSEEEECCC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHhhhhcCCeEEEEecCCCHHHHHHHHHhcCCCCEEEECCC
Confidence            3589999999996 599999999999999999999988765433322222     12222   2   2467999999876


Q ss_pred             CcccC---C-------------------HHHHhcc-CCCeEEEeccCC
Q psy4626         142 NKNVV---T-------------------REHMDKM-KNGCVVCNMGHS  166 (542)
Q Consensus       142 ~~~lI---~-------------------~e~l~~m-k~GailvnvG~g  166 (542)
                      ...-+   +                   +..+..| ++++.|||+++.
T Consensus        88 i~~~~~~~~~~~w~~~~~vNl~g~~~~~~~~~p~m~~~~G~IVnisS~  135 (242)
T 4b79_A           88 ISRDREEYDLATFERVLRLNLSAAMLASQLARPLLAQRGGSILNIASM  135 (242)
T ss_dssp             CCCGGGGGSHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCEEEEEECCG
T ss_pred             CCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEeec
Confidence            22111   1                   2344555 357889998864

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=97.00  E-value=0.00034  Score=72.19  Aligned_cols=86  Identities=10%  Similarity=0.115  Sum_probs=62.1

Q ss_pred             EEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcC--------------Ccee-eCHHHHhcCCcEEEEcCCCc
Q psy4626          79 QVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMD--------------GFSV-VKLNEVIRTVDIVVTATGNK  143 (542)
Q Consensus        79 tVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~--------------G~~v-~~l~e~l~~aDvVi~atG~~  143 (542)
                      +|+|||+|.+|..+|..|...|.+|+++++++.+.......              +..+ .++.+++..+|+||.|+...
T Consensus        17 kI~iIG~G~mG~~la~~L~~~G~~V~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aDvVilav~~~   96 (366)
T 1evy_A           17 KAVVFGSGAFGTALAMVLSKKCREVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAYNGAEIILFVIPTQ   96 (366)
T ss_dssp             EEEEECCSHHHHHHHHHHTTTEEEEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHTTCSSEEECCCHH
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccccccccccceeeeCCHHHHHcCCCEEEECCChH
Confidence            89999999999999999999999999999998765433222              2232 35677788999999998642


Q ss_pred             ccCCHHHH--------hccCC-CeEEEeccCC
Q psy4626         144 NVVTREHM--------DKMKN-GCVVCNMGHS  166 (542)
Q Consensus       144 ~lI~~e~l--------~~mk~-GailvnvG~g  166 (542)
                       .+ .+.+        ..+++ +.+++++..+
T Consensus        97 -~~-~~v~~~~~~gl~~~l~~~~~ivv~~~~g  126 (366)
T 1evy_A           97 -FL-RGFFEKSGGNLIAYAKEKQVPVLVCTKG  126 (366)
T ss_dssp             -HH-HHHHHHHCHHHHHHHHHHTCCEEECCCS
T ss_pred             -HH-HHHHHHhHHHHHHhcCccCCEEEEECCc
Confidence             22 1222        33566 8888877643

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=96.99  E-value=0.0007  Score=65.26  Aligned_cols=85  Identities=18%  Similarity=0.339  Sum_probs=59.6

Q ss_pred             cCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeC--------HHHH-hcCCcEEEEcCCCcc--
Q psy4626          76 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVK--------LNEV-IRTVDIVVTATGNKN--  144 (542)
Q Consensus        76 ~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~--------l~e~-l~~aDvVi~atG~~~--  144 (542)
                      ..++++|+|+|.+|+.+++.|...|. |+++|.+|.+...+. .|+.++.        ++++ +.++|.||.+++...  
T Consensus         8 ~~~~viI~G~G~~G~~la~~L~~~g~-v~vid~~~~~~~~~~-~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~d~~n   85 (234)
T 2aef_A            8 KSRHVVICGWSESTLECLRELRGSEV-FVLAEDENVRKKVLR-SGANFVHGDPTRVSDLEKANVRGARAVIVDLESDSET   85 (234)
T ss_dssp             --CEEEEESCCHHHHHHHHHSTTSEE-EEEESCGGGHHHHHH-TTCEEEESCTTCHHHHHHTTCTTCSEEEECCSCHHHH
T ss_pred             CCCEEEEECCChHHHHHHHHHHhCCe-EEEEECCHHHHHHHh-cCCeEEEcCCCCHHHHHhcCcchhcEEEEcCCCcHHH
Confidence            35689999999999999999999999 999999998766555 6655431        2233 578999999987541  


Q ss_pred             cCCHHHHhccCCCeEEEe
Q psy4626         145 VVTREHMDKMKNGCVVCN  162 (542)
Q Consensus       145 lI~~e~l~~mk~Gailvn  162 (542)
                      +.-....+.+.+...++.
T Consensus        86 ~~~~~~a~~~~~~~~iia  103 (234)
T 2aef_A           86 IHCILGIRKIDESVRIIA  103 (234)
T ss_dssp             HHHHHHHHHHCSSSEEEE
T ss_pred             HHHHHHHHHHCCCCeEEE
Confidence            222234555666644443

>2tmg_A Protein (glutamate dehydrogenase); metabolic role, mutant, oxidoreductase; 2.90A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.1 PDB: 1b26_A 1b3b_A

Probab=96.98  E-value=0.0063  Score=64.57  Aligned_cols=83  Identities=17%  Similarity=0.238  Sum_probs=60.4

Q ss_pred             cCccccCcEEEEEcCChhHHHHHHHHHh-CCCEEE-EEeC----------Cchhhhhhhc-C-------CceeeCHHHHh
Q psy4626          71 TDVMFGGKQVVLCGYGEVGKGCCQSLKG-LGCVIY-ITEI----------DPICALQACM-D-------GFSVVKLNEVI  130 (542)
Q Consensus        71 ~~~~l~GktVvViG~G~IG~~vA~~l~~-~Ga~Vi-v~d~----------dp~r~~~A~~-~-------G~~v~~l~e~l  130 (542)
                      .+..+.|++|+|.|+|++|..+|+.|.. .|++|+ +.|.          |+..+.+... .       +...++.++.+
T Consensus       203 ~g~~l~g~~vaVqG~GnVG~~~a~~L~e~~GakvVavsD~~G~i~dp~Gld~~~l~~~~~~~g~l~~y~~a~~~~~~eil  282 (415)
T 2tmg_A          203 LGIDPKKATVAVQGFGNVGQFAALLISQELGSKVVAVSDSRGGIYNPEGFDVEELIRYKKEHGTVVTYPKGERITNEELL  282 (415)
T ss_dssp             TTCCTTTCEEEEECCSHHHHHHHHHHHHTTCCEEEEEECSSCEEECTTCCCHHHHHHHHHHSSCSTTCSSSEEECHHHHT
T ss_pred             cCCCcCCCEEEEECCcHHHHHHHHHHHHhcCCEEEEEEeCCCeEECCCCCCHHHHHHHHHhhCCcccCCCceEcCchhhh
Confidence            4567899999999999999999999998 999988 6666          3433322111 1       12345556665


Q ss_pred             -cCCcEEEEcCCCcccCCHHHHhcc
Q psy4626         131 -RTVDIVVTATGNKNVVTREHMDKM  154 (542)
Q Consensus       131 -~~aDvVi~atG~~~lI~~e~l~~m  154 (542)
                       ..+||++.|+ ....++.+....+
T Consensus       283 ~~~~DIliP~A-~~n~i~~~~a~~l  306 (415)
T 2tmg_A          283 ELDVDILVPAA-LEGAIHAGNAERI  306 (415)
T ss_dssp             TCSCSEEEECS-STTSBCHHHHTTC
T ss_pred             cCCCcEEEecC-CcCccCcccHHHc
Confidence             5899999986 3457887777777

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=96.98  E-value=0.002  Score=61.53  Aligned_cols=70  Identities=23%  Similarity=0.303  Sum_probs=52.8

Q ss_pred             ccccCcEEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCc-eee--C----HHHHhcCCcEEEEcCCC
Q psy4626          73 VMFGGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGF-SVV--K----LNEVIRTVDIVVTATGN  142 (542)
Q Consensus        73 ~~l~GktVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~-~v~--~----l~e~l~~aDvVi~atG~  142 (542)
                      ..+.|++|+|+|. |.||+.+++.|...|.+|+++++++.+.......++ .++  +    +.+++.++|+||.+.|.
T Consensus        17 ~~l~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~D~vi~~ag~   94 (236)
T 3e8x_A           17 LYFQGMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNEEQGPELRERGASDIVVANLEEDFSHAFASIDAVVFAAGS   94 (236)
T ss_dssp             ----CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHTTCSEEEECCTTSCCGGGGTTCSEEEECCCC
T ss_pred             cCcCCCeEEEECCCChHHHHHHHHHHhCCCeEEEEECChHHHHHHHhCCCceEEEcccHHHHHHHHcCCCEEEECCCC
Confidence            3578999999998 999999999999999999999999877654444455 432  2    34566789999998764

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=96.97  E-value=0.0046  Score=61.71  Aligned_cols=81  Identities=19%  Similarity=0.148  Sum_probs=56.2

Q ss_pred             HHHHHHHhhcCccccCcEEEEEc-CChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhc-----CCc-----eeeC---HH
Q psy4626          62 SIIDSLKRSTDVMFGGKQVVLCG-YGEVGKGCCQSLKGLGCVIYITEIDPICALQACM-----DGF-----SVVK---LN  127 (542)
Q Consensus        62 s~~~ai~r~~~~~l~GktVvViG-~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~-----~G~-----~v~~---l~  127 (542)
                      +.+..+.+..+..+.|++++|+| .|.+|+.++..|...|++|+++++++.+..+...     .+.     ++.+   ++
T Consensus       104 g~~~~l~~~~~~~l~gk~vlVtGaaGGiG~aia~~L~~~G~~V~i~~R~~~~~~~l~~~~~~~~~~~~~~~D~~~~~~~~  183 (287)
T 1lu9_A          104 AGVALVVKAAGGSVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKRFKVNVTAAETADDASRA  183 (287)
T ss_dssp             HHHHHHHHHTTSCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHTCCCEEEECCSHHHHH
T ss_pred             HHHHHHHHhhccCCCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEECCHHHHHHHHHHHHhcCCcEEEEecCCCHHHHH
Confidence            34444443212457899999999 8999999999999999999999998776542211     121     1222   23


Q ss_pred             HHhcCCcEEEEcCCC
Q psy4626         128 EVIRTVDIVVTATGN  142 (542)
Q Consensus       128 e~l~~aDvVi~atG~  142 (542)
                      ++++.+|++|.++|.
T Consensus       184 ~~~~~~DvlVn~ag~  198 (287)
T 1lu9_A          184 EAVKGAHFVFTAGAI  198 (287)
T ss_dssp             HHTTTCSEEEECCCT
T ss_pred             HHHHhCCEEEECCCc
Confidence            456778999998863

>3nv9_A Malic enzyme; rossmann fold, oxidoreductase; 2.25A {Entamoeba histolytica}

Probab=96.94  E-value=0.005  Score=65.79  Aligned_cols=123  Identities=14%  Similarity=0.109  Sum_probs=90.5

Q ss_pred             HhHHHHHHHHHHHHH---hhcCccccCcEEEEEcCChhHHHHHHHHHhCCC---EEEEEeCCc----hhh----------
Q psy4626          54 DNLYMCRESIIDSLK---RSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGC---VIYITEIDP----ICA----------  113 (542)
Q Consensus        54 d~~~g~~~s~~~ai~---r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga---~Viv~d~dp----~r~----------  113 (542)
                      |..+||+-.+..++.   +.++..+...+++|.|+|.-|.++|..+...|+   +++++|...    .|.          
T Consensus       193 DD~qGTA~V~lAgllnAlki~gk~l~d~riV~~GAGaAGigia~ll~~~G~~~~~i~l~D~~Gli~~~R~~l~~~~~~~~  272 (487)
T 3nv9_A          193 DDQQGTASVTLAGLLNALKLVKKDIHECRMVFIGAGSSNTTCLRLIVTAGADPKKIVMFDSKGSLHNGREDIKKDTRFYR  272 (487)
T ss_dssp             TTTHHHHHHHHHHHHHHHHHHTCCGGGCCEEEECCSHHHHHHHHHHHHTTCCGGGEEEEETTEECCTTCHHHHHCGGGHH
T ss_pred             cccchHHHHHHHHHHHHHHHhCCChhhcEEEEECCCHHHHHHHHHHHHcCCCcccEEEEeccccccCCcchhhhhcccHH
Confidence            445677655544443   345677888999999999999999999999999   899998752    221          


Q ss_pred             --hhhhcC-CceeeCHHHHhcCCcEEEEcCCC-cccCCHHHHhccCCCeEEEeccCCCcccChHhhc
Q psy4626         114 --LQACMD-GFSVVKLNEVIRTVDIVVTATGN-KNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLR  176 (542)
Q Consensus       114 --~~A~~~-G~~v~~l~e~l~~aDvVi~atG~-~~lI~~e~l~~mk~GailvnvG~g~~eid~~aL~  176 (542)
                        ..|... .....++.++++++|++|-+++. +++++++.++.|.+.-+|.-.+....|+..+...
T Consensus       273 k~~~A~~~n~~~~~~L~eav~~adVlIG~S~~~pg~ft~e~V~~Ma~~PIIFaLSNPtpEi~pe~A~  339 (487)
T 3nv9_A          273 KWEICETTNPSKFGSIAEACVGADVLISLSTPGPGVVKAEWIKSMGEKPIVFCCANPVPEIYPYEAK  339 (487)
T ss_dssp             HHHHHHHSCTTCCCSHHHHHTTCSEEEECCCSSCCCCCHHHHHTSCSSCEEEECCSSSCSSCHHHHH
T ss_pred             HHHHHHhcccccCCCHHHHHhcCCEEEEecccCCCCCCHHHHHhhcCCCEEEECCCCCccCCHHHHH
Confidence              112211 11345789999999999998833 7899999999999888888777666677766443

>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}

Probab=96.94  E-value=0.0018  Score=65.05  Aligned_cols=93  Identities=16%  Similarity=0.228  Sum_probs=65.8

Q ss_pred             cccCcEEEEEcCC-hhHHHHHHHHHhCCCEEEEEeCCchhhhhhh-cCCce-------eeCHH---HH-------hcCCc
Q psy4626          74 MFGGKQVVLCGYG-EVGKGCCQSLKGLGCVIYITEIDPICALQAC-MDGFS-------VVKLN---EV-------IRTVD  134 (542)
Q Consensus        74 ~l~GktVvViG~G-~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~-~~G~~-------v~~l~---e~-------l~~aD  134 (542)
                      .+.||+++|.|.+ -||+.+|+.|...|++|+++++++.++.++. +.|..       +.+.+   ++       +...|
T Consensus        26 rL~gKvalVTGas~GIG~aiA~~la~~Ga~V~i~~r~~~~l~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~iD  105 (273)
T 4fgs_A           26 RLNAKIAVITGATSGIGLAAAKRFVAEGARVFITGRRKDVLDAAIAEIGGGAVGIQADSANLAELDRLYEKVKAEAGRID  105 (273)
T ss_dssp             TTTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCTTCEEEECCTTCHHHHHHHHHHHHHHHSCEE
T ss_pred             hhCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcCCCeEEEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence            4789999999986 5999999999999999999999987765432 22321       12221   11       24789


Q ss_pred             EEEEcCCCcc---cCC---------------------HHHHhccCCCeEEEeccCC
Q psy4626         135 IVVTATGNKN---VVT---------------------REHMDKMKNGCVVCNMGHS  166 (542)
Q Consensus       135 vVi~atG~~~---lI~---------------------~e~l~~mk~GailvnvG~g  166 (542)
                      ++|.+.|...   +.+                     +..+..|++++.+||+++.
T Consensus       106 iLVNNAG~~~~~~~~~~~~e~w~~~~~vNl~g~~~~~~~~~p~m~~~G~IInisS~  161 (273)
T 4fgs_A          106 VLFVNAGGGSMLPLGEVTEEQYDDTFDRNVKGVLFTVQKALPLLARGSSVVLTGST  161 (273)
T ss_dssp             EEEECCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEECCG
T ss_pred             EEEECCCCCCCCChhhccHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCeEEEEeeh
Confidence            9999766211   111                     5567788888889988864

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=96.94  E-value=0.0011  Score=69.06  Aligned_cols=221  Identities=17%  Similarity=0.193  Sum_probs=114.0

Q ss_pred             HHHHHHHhCCCEEEEEeCCc-----hhhhhhhcCCceeeCHHHHhcCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccC
Q psy4626          91 GCCQSLKGLGCVIYITEIDP-----ICALQACMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGH  165 (542)
Q Consensus        91 ~vA~~l~~~Ga~Viv~d~dp-----~r~~~A~~~G~~v~~l~e~l~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~  165 (542)
                      ..++.|...|.+|++ +...     +...+....|+.+++-++.+ ++|+|+.. ..  .+ .+.+..+++|..++...+
T Consensus        21 ~~v~~L~~~g~~v~v-e~~ag~~~~~~d~~y~~aga~i~~~~~~~-~ad~il~v-k~--p~-~~~~~~l~~~~~~~~~~~   94 (369)
T 2eez_A           21 GGVESLVRRGHTVLV-ERGAGEGSGLSDAEYARAGAELVGREEAW-GAEMVVKV-KE--PL-PEEYGFLREGLILFTYLH   94 (369)
T ss_dssp             HHHHHHHHTTCEEEE-ETTTTGGGTCCHHHHHHHTCEEECHHHHT-TSSEEECS-SC--CC-GGGGGGCCTTCEEEECCC
T ss_pred             HHHHHHHhCCCEEEE-eCCCCccCCCCHHHHHHCCCEEeccccee-cCCEEEEE-CC--CC-HHHHhhcCCCcEEEEEec
Confidence            345677788999865 3222     11122234477766656678 89998732 22  23 356899999988876554


Q ss_pred             CC-cccChHhhcCCCcceeeeccceeeEecCCCCEEEEecCCCcccccCCCChhHHHhhHHHHHHHHHHHHhcCC---CC
Q psy4626         166 SN-TEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIVLLAEGRLVNLSCSSLPSFVVSITACTQALALIELFNAP---SG  241 (542)
Q Consensus       166 g~-~eid~~aL~~~~l~v~~~~~~v~~y~~~dg~~I~LLa~GrLvnl~~~thp~~vmd~sfa~q~la~~~L~~~~---~~  241 (542)
                      .. +..+++.+.+++++....+      ..++       ..|+++-+.    |+-...-..+.+  ...+.+...   .+
T Consensus        95 ~~~~~~~~~~l~~~gi~~ia~e------~~~~-------~~~~~~~l~----~~s~~ag~~av~--~a~~~l~~~~~g~~  155 (369)
T 2eez_A           95 LAADRGLTEAMLRSGVTGIAYE------TVQL-------PDGTLPLLV----PMSEVAGRMAPQ--VGAQFLEKPKGGRG  155 (369)
T ss_dssp             GGGCHHHHHHHHHHTCEEEEGG------GCCC-------TTCCCTTTH----HHHHHHHHHHHH--HHHHHTSGGGTSCC
T ss_pred             ccCCHHHHHHHHHCCCeEEEee------cccc-------ccCCeeecc----cchHHHHHHHHH--HHHHHHHHhcCCCc
Confidence            32 3445566654444332110      0111       113332211    221111111222  222222211   00


Q ss_pred             CCCCccccCChhhHHHHHHhcCCcccc-ccccccHHHHhhcCCC----CCCCCCCCccc-cCCee-------eeehhhhc
Q psy4626         242 RYKSDVYLLPKKMDEYVASLHLPTFDA-HLTELSDEQAKYMGLN----KAGPFKPSYYS-MDGFS-------VVKLNEVI  308 (542)
Q Consensus       242 ~~~~gv~~lp~~~d~~VA~l~L~~lg~-~i~~lt~~~a~~lg~~----e~~p~~a~ea~-mdG~~-------v~~~~~a~  308 (542)
                      .+..++..++..        +.-.+|. .++....+.++.+|+.    +.+|.+.-++. .-|..       ...+++++
T Consensus       156 ~~~~~~~~l~~~--------~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~~  227 (369)
T 2eez_A          156 VLLGGVPGVAPA--------SVVILGGGTVGTNAAKIALGMGAQVTILDVNHKRLQYLDDVFGGRVITLTATEANIKKSV  227 (369)
T ss_dssp             CCTTCBTBBCCC--------EEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTTSEEEEECCHHHHHHHH
T ss_pred             eecCCCCCCCCC--------EEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHhcCceEEEecCCHHHHHHHH
Confidence            122222111111        1112222 7788888889999983    23343321111 11222       12456888


Q ss_pred             ccCcEEEEccCCC-----CccCHhHHhcCCCCcEEEccCCC
Q psy4626         309 RTVDIVVTATGNK-----NVVTREHMDKMKNGCVVCNMGHS  344 (542)
Q Consensus       309 ~~~d~~~t~tg~~-----~vi~~~~~~~mk~gail~n~gh~  344 (542)
                      +.+|++|.++|..     .++..+.++.||+|++++|.|..
T Consensus       228 ~~~DvVi~~~g~~~~~~~~li~~~~l~~mk~gg~iV~v~~~  268 (369)
T 2eez_A          228 QHADLLIGAVLVPGAKAPKLVTRDMLSLMKEGAVIVDVAVD  268 (369)
T ss_dssp             HHCSEEEECCC-------CCSCHHHHTTSCTTCEEEECC--
T ss_pred             hCCCEEEECCCCCccccchhHHHHHHHhhcCCCEEEEEecC
Confidence            9999999988754     56899999999999999999954

>3k92_A NAD-GDH, NAD-specific glutamate dehydrogenase; ROCG, oxidoreductase; 2.30A {Bacillus subtilis} PDB: 3k8z_A

Probab=96.90  E-value=0.0049  Score=65.52  Aligned_cols=83  Identities=18%  Similarity=0.337  Sum_probs=60.5

Q ss_pred             cCccccCcEEEEEcCChhHHHHHHHHHhCCCEEE-EEeCC----------chhhhhhhc-CC------ceeeCHHHHh-c
Q psy4626          71 TDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIY-ITEID----------PICALQACM-DG------FSVVKLNEVI-R  131 (542)
Q Consensus        71 ~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Vi-v~d~d----------p~r~~~A~~-~G------~~v~~l~e~l-~  131 (542)
                      .+..+.|++|+|-|+|++|..+|+.|..+|++|+ +.|.+          +..+.+... .|      ...++.++.+ .
T Consensus       215 ~g~~l~g~~vaVqG~GnVG~~aa~~l~e~GakVVavsD~~G~iyd~~GlD~~~l~~~~~~~g~i~~~~a~~~~~~~i~~~  294 (424)
T 3k92_A          215 KGIKLQNARIIIQGFGNAGSFLAKFMHDAGAKVIGISDANGGLYNPDGLDIPYLLDKRDSFGMVTNLFTDVITNEELLEK  294 (424)
T ss_dssp             TTCCGGGCEEEEECCSHHHHHHHHHHHHHTCEEEEEECSSCEEECTTCCCHHHHHHHCCSSSCCGGGCSCCBCHHHHHHS
T ss_pred             cCCCcccCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCcEECCCCCCHHHHHHHHHHhCCCCCCCcEEecCccceec
Confidence            3567999999999999999999999999999975 67766          333222221 22      2344556655 5


Q ss_pred             CCcEEEEcCCCcccCCHHHHhcc
Q psy4626         132 TVDIVVTATGNKNVVTREHMDKM  154 (542)
Q Consensus       132 ~aDvVi~atG~~~lI~~e~l~~m  154 (542)
                      .|||++-|+.. +.|+.+....+
T Consensus       295 ~~DIliPcA~~-n~I~~~~a~~l  316 (424)
T 3k92_A          295 DCDILVPAAIS-NQITAKNAHNI  316 (424)
T ss_dssp             CCSEEEECSCS-SCBCTTTGGGC
T ss_pred             cccEEeecCcc-cccChhhHhhc
Confidence            89999998743 67887777777

>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus}

Probab=96.90  E-value=0.0013  Score=63.94  Aligned_cols=79  Identities=25%  Similarity=0.297  Sum_probs=59.3

Q ss_pred             EEEEEcCChhHHHHHHHHHhCCCEE-EEEeCCchhhhhhhcCCceeeCHHHHh-cCCcEEEEcCCCcccCCHHHHhccCC
Q psy4626          79 QVVLCGYGEVGKGCCQSLKGLGCVI-YITEIDPICALQACMDGFSVVKLNEVI-RTVDIVVTATGNKNVVTREHMDKMKN  156 (542)
Q Consensus        79 tVvViG~G~IG~~vA~~l~~~Ga~V-iv~d~dp~r~~~A~~~G~~v~~l~e~l-~~aDvVi~atG~~~lI~~e~l~~mk~  156 (542)
                      +|+|+|+|.+|+.+++.+...|.++ .++|+++ +..   .   .+.++++++ .++|+|++|+++.... ......++.
T Consensus         2 ~vgiIG~G~mG~~~~~~l~~~g~~lv~v~d~~~-~~~---~---~~~~~~~l~~~~~DvVv~~~~~~~~~-~~~~~~l~~   73 (236)
T 2dc1_A            2 LVGLIGYGAIGKFLAEWLERNGFEIAAILDVRG-EHE---K---MVRGIDEFLQREMDVAVEAASQQAVK-DYAEKILKA   73 (236)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEECSSC-CCT---T---EESSHHHHTTSCCSEEEECSCHHHHH-HHHHHHHHT
T ss_pred             EEEEECCCHHHHHHHHHHhcCCCEEEEEEecCc-chh---h---hcCCHHHHhcCCCCEEEECCCHHHHH-HHHHHHHHC
Confidence            6999999999999999998889987 6899875 221   1   345788888 6999999998754222 234566788


Q ss_pred             CeEEEeccC
Q psy4626         157 GCVVCNMGH  165 (542)
Q Consensus       157 GailvnvG~  165 (542)
                      |..++....
T Consensus        74 G~~vv~~~~   82 (236)
T 2dc1_A           74 GIDLIVLST   82 (236)
T ss_dssp             TCEEEESCG
T ss_pred             CCcEEEECc
Confidence            887776554

>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A

Probab=96.88  E-value=0.0056  Score=60.05  Aligned_cols=41  Identities=20%  Similarity=0.240  Sum_probs=36.0

Q ss_pred             cccCcEEEEEcCC---hhHHHHHHHHHhCCCEEEEEeCCchhhh
Q psy4626          74 MFGGKQVVLCGYG---EVGKGCCQSLKGLGCVIYITEIDPICAL  114 (542)
Q Consensus        74 ~l~GktVvViG~G---~IG~~vA~~l~~~Ga~Viv~d~dp~r~~  114 (542)
                      .+.||+++|.|.+   -||+.+|+.|...|++|+++++++....
T Consensus         3 ~l~gK~alVTGaa~~~GIG~aiA~~la~~Ga~Vvi~~r~~~~~~   46 (256)
T 4fs3_A            3 NLENKTYVIMGIANKRSIAFGVAKVLDQLGAKLVFTYRKERSRK   46 (256)
T ss_dssp             CCTTCEEEEECCCSTTCHHHHHHHHHHHTTCEEEEEESSGGGHH
T ss_pred             CCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEECCHHHHH
Confidence            4789999999974   5999999999999999999999876543

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=96.84  E-value=0.0027  Score=64.48  Aligned_cols=92  Identities=15%  Similarity=0.244  Sum_probs=61.6

Q ss_pred             CccccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCcee-------------eCHHHHhcCCcEEEE
Q psy4626          72 DVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV-------------VKLNEVIRTVDIVVT  138 (542)
Q Consensus        72 ~~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v-------------~~l~e~l~~aDvVi~  138 (542)
                      +....-++|+|+|+|.+|..+|..|...|.+|+++ +++.+.......|...             .+..+.+..+|+||.
T Consensus        14 ~~~~~~~kI~IiGaGa~G~~~a~~L~~~G~~V~l~-~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~D~vil   92 (318)
T 3hwr_A           14 NLYFQGMKVAIMGAGAVGCYYGGMLARAGHEVILI-ARPQHVQAIEATGLRLETQSFDEQVKVSASSDPSAVQGADLVLF   92 (318)
T ss_dssp             ------CEEEEESCSHHHHHHHHHHHHTTCEEEEE-CCHHHHHHHHHHCEEEECSSCEEEECCEEESCGGGGTTCSEEEE
T ss_pred             hhhccCCcEEEECcCHHHHHHHHHHHHCCCeEEEE-EcHhHHHHHHhCCeEEEcCCCcEEEeeeeeCCHHHcCCCCEEEE
Confidence            34455779999999999999999999999999999 8886655443334321             111233578999999


Q ss_pred             cCCCcccCCHHHHh----ccCCCeEEEeccCC
Q psy4626         139 ATGNKNVVTREHMD----KMKNGCVVCNMGHS  166 (542)
Q Consensus       139 atG~~~lI~~e~l~----~mk~GailvnvG~g  166 (542)
                      |+....+  .+.++    .++++.+++++.-|
T Consensus        93 avk~~~~--~~~l~~l~~~l~~~~~iv~~~nG  122 (318)
T 3hwr_A           93 CVKSTDT--QSAALAMKPALAKSALVLSLQNG  122 (318)
T ss_dssp             CCCGGGH--HHHHHHHTTTSCTTCEEEEECSS
T ss_pred             EcccccH--HHHHHHHHHhcCCCCEEEEeCCC
Confidence            9865433  23333    45678888876655

>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}

Probab=96.83  E-value=0.0013  Score=65.89  Aligned_cols=86  Identities=15%  Similarity=0.128  Sum_probs=61.1

Q ss_pred             cEEEEEcCChhHHHHHHHHHhC-----C-CEEEEEeCCchhhhhhhc-CCceee--------------CHHHHhcCCcEE
Q psy4626          78 KQVVLCGYGEVGKGCCQSLKGL-----G-CVIYITEIDPICALQACM-DGFSVV--------------KLNEVIRTVDIV  136 (542)
Q Consensus        78 ktVvViG~G~IG~~vA~~l~~~-----G-a~Viv~d~dp~r~~~A~~-~G~~v~--------------~l~e~l~~aDvV  136 (542)
                      .+|+|+|+|.+|..+|..|...     | .+|+++++ +.+...... .|..+.              +..+.+..+|+|
T Consensus         9 m~I~iiG~G~mG~~~a~~L~~~~~~~~g~~~V~~~~r-~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v   87 (317)
T 2qyt_A            9 IKIAVFGLGGVGGYYGAMLALRAAATDGLLEVSWIAR-GAHLEAIRAAGGLRVVTPSRDFLARPTCVTDNPAEVGTVDYI   87 (317)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHTTSSEEEEEECC-HHHHHHHHHHTSEEEECSSCEEEECCSEEESCHHHHCCEEEE
T ss_pred             CEEEEECcCHHHHHHHHHHHhCccccCCCCCEEEEEc-HHHHHHHHhcCCeEEEeCCCCeEEecceEecCccccCCCCEE
Confidence            4799999999999999999888     9 89999998 655444334 565432              223456789999


Q ss_pred             EEcCCCcccCCHHHHh----ccCCCeEEEeccCC
Q psy4626         137 VTATGNKNVVTREHMD----KMKNGCVVCNMGHS  166 (542)
Q Consensus       137 i~atG~~~lI~~e~l~----~mk~GailvnvG~g  166 (542)
                      |.|+....+  .+.++    .++++..++.+.-|
T Consensus        88 il~vk~~~~--~~v~~~i~~~l~~~~~iv~~~nG  119 (317)
T 2qyt_A           88 LFCTKDYDM--ERGVAEIRPMIGQNTKILPLLNG  119 (317)
T ss_dssp             EECCSSSCH--HHHHHHHGGGEEEEEEEEECSCS
T ss_pred             EEecCcccH--HHHHHHHHhhcCCCCEEEEccCC
Confidence            999866543  23333    35567788876544

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=96.81  E-value=0.0019  Score=61.11  Aligned_cols=90  Identities=10%  Similarity=0.079  Sum_probs=60.5

Q ss_pred             CcEEEEEcC-ChhHHHHHHHHH-hCCCEEEEEeCCch-hhhhh--hcCCceee-----C---HHHHhcCCcEEEEcCCCc
Q psy4626          77 GKQVVLCGY-GEVGKGCCQSLK-GLGCVIYITEIDPI-CALQA--CMDGFSVV-----K---LNEVIRTVDIVVTATGNK  143 (542)
Q Consensus        77 GktVvViG~-G~IG~~vA~~l~-~~Ga~Viv~d~dp~-r~~~A--~~~G~~v~-----~---l~e~l~~aDvVi~atG~~  143 (542)
                      .|+|+|+|. |.||+.+++.|. ..|.+|+++++++. +....  ...+..++     +   ++++++++|+||.+.|..
T Consensus         5 mk~vlVtGasg~iG~~~~~~l~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vv~~ag~~   84 (221)
T 3r6d_A            5 YXYITILGAAGQIAQXLTATLLTYTDMHITLYGRQLKTRIPPEIIDHERVTVIEGSFQNPGXLEQAVTNAEVVFVGAMES   84 (221)
T ss_dssp             CSEEEEESTTSHHHHHHHHHHHHHCCCEEEEEESSHHHHSCHHHHTSTTEEEEECCTTCHHHHHHHHTTCSEEEESCCCC
T ss_pred             EEEEEEEeCCcHHHHHHHHHHHhcCCceEEEEecCccccchhhccCCCceEEEECCCCCHHHHHHHHcCCCEEEEcCCCC
Confidence            367999995 999999999999 89999999999887 54332  22233322     2   245678999999988753


Q ss_pred             ccCCHHHHhccC--CCeEEEeccCC
Q psy4626         144 NVVTREHMDKMK--NGCVVCNMGHS  166 (542)
Q Consensus       144 ~lI~~e~l~~mk--~GailvnvG~g  166 (542)
                      ++-....++.|+  ..+.+++++..
T Consensus        85 n~~~~~~~~~~~~~~~~~iv~iSs~  109 (221)
T 3r6d_A           85 GSDMASIVKALSRXNIRRVIGVSMA  109 (221)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEEEEET
T ss_pred             ChhHHHHHHHHHhcCCCeEEEEeec
Confidence            221234455553  22467766653

>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}

Probab=96.81  E-value=0.00099  Score=69.12  Aligned_cols=87  Identities=9%  Similarity=0.101  Sum_probs=61.9

Q ss_pred             cEEEEEcCChhHHHHHHHHHhCC-------CEEEEEeCCch-----hhhhhhc--------------CCcee-eCHHHHh
Q psy4626          78 KQVVLCGYGEVGKGCCQSLKGLG-------CVIYITEIDPI-----CALQACM--------------DGFSV-VKLNEVI  130 (542)
Q Consensus        78 ktVvViG~G~IG~~vA~~l~~~G-------a~Viv~d~dp~-----r~~~A~~--------------~G~~v-~~l~e~l  130 (542)
                      ++|+|+|+|.+|..+|..|...|       .+|+++++++.     +......              .+..+ .++.+++
T Consensus        22 ~kI~iIGaG~mG~alA~~L~~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~ea~  101 (375)
T 1yj8_A           22 LKISILGSGNWASAISKVVGTNAKNNYLFENEVRMWIRDEFVNGERMVDIINNKHENTKYLKGVPLPHNIVAHSDLASVI  101 (375)
T ss_dssp             BCEEEECCSHHHHHHHHHHHHHHHHCTTBCSCEEEECCSCC---CCHHHHHHHHCBCTTTSTTCBCCTTEEEESSTHHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCccCCCCCeEEEEECChhhhhHHHHHHHHhcCcccccCCcccCcCCeEEECCHHHHH
Confidence            47999999999999999998888       89999999886     4432211              12232 3466778


Q ss_pred             cCCcEEEEcCCCcccCCHHHH----h----ccCCCeEEEeccCC
Q psy4626         131 RTVDIVVTATGNKNVVTREHM----D----KMKNGCVVCNMGHS  166 (542)
Q Consensus       131 ~~aDvVi~atG~~~lI~~e~l----~----~mk~GailvnvG~g  166 (542)
                      +.+|+||.|+... .+ .+.+    .    .++++.+++++..+
T Consensus       102 ~~aDvVilav~~~-~~-~~vl~~i~~~~~~~l~~~~ivvs~~~G  143 (375)
T 1yj8_A          102 NDADLLIFIVPCQ-YL-ESVLASIKESESIKIASHAKAISLTKG  143 (375)
T ss_dssp             TTCSEEEECCCHH-HH-HHHHHHHTC---CCCCTTCEEEECCCS
T ss_pred             cCCCEEEEcCCHH-HH-HHHHHHHhhhhhccCCCCCEEEEeCCc
Confidence            8999999998643 22 2333    2    46678888877644

>4fcc_A Glutamate dehydrogenase; protein complex, rossmann fold, metabolic role, NAD, NADP, oxidoreductase; 2.00A {Escherichia coli O157} PDB: 4fhn_X 2yfg_A 3sbo_A 2yfg_E

Probab=96.80  E-value=0.0055  Score=65.54  Aligned_cols=106  Identities=18%  Similarity=0.174  Sum_probs=67.8

Q ss_pred             HHHHHHHHHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEe-CC-----c-----hhhh---h-------
Q psy4626          57 YMCRESIIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITE-ID-----P-----ICAL---Q-------  115 (542)
Q Consensus        57 ~g~~~s~~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d-~d-----p-----~r~~---~-------  115 (542)
                      ||+-..+-+++.+ .+..+.|++|+|-|+|++|..+|+.|...|++|++++ .+     |     ....   +       
T Consensus       216 ~Gv~~~~~~~~~~-~~~~l~Gk~vaVQG~GnVG~~aa~~L~e~GakvVavsD~~G~i~d~~Gid~e~l~~l~e~k~~~~g  294 (450)
T 4fcc_A          216 YGLVYFTEAMLKR-HGMGFEGMRVSVSGSGNVAQYAIEKAMEFGARVITASDSSGTVVDESGFTKEKLARLIEIKSSRDG  294 (450)
T ss_dssp             HHHHHHHHHHHHH-TTCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEEETTEEEECTTCCCHHHHHHHHHHHTSTTC
T ss_pred             eeHHHHHHHHHHH-cCCCcCCCEEEEeCCChHHHHHHHHHHhcCCeEEEEecCCceEEeCCCCCHHHHHHHHHHhcccCC
Confidence            3444333333333 3567899999999999999999999999999998764 11     1     1111   0       


Q ss_pred             -----hhcCCceeeCHHHHh-cCCcEEEEcCCCcccCCHHHHhccCC-CeE-EEecc
Q psy4626         116 -----ACMDGFSVVKLNEVI-RTVDIVVTATGNKNVVTREHMDKMKN-GCV-VCNMG  164 (542)
Q Consensus       116 -----A~~~G~~v~~l~e~l-~~aDvVi~atG~~~lI~~e~l~~mk~-Gai-lvnvG  164 (542)
                           +...|...++.++.+ ..|||++-|. ..+.|+.+....++. |+. +++.+
T Consensus       295 ~v~~~~~~~g~~~~~~~~i~~~~~DI~iPcA-l~~~I~~~~a~~L~a~g~k~IaEgA  350 (450)
T 4fcc_A          295 RVADYAKEFGLVYLEGQQPWSVPVDIALPCA-TQNELDVDAAHQLIANGVKAVAEGA  350 (450)
T ss_dssp             CHHHHHHHHTCEEEETCCGGGSCCSEEEECS-CTTCBCHHHHHHHHHTTCCEEECCS
T ss_pred             ccccccccCCcEEecCcccccCCccEEeecc-ccccccHHHHHHHHhcCceEEecCC
Confidence                 111234444444544 5799999975 335788888888864 444 44433

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=96.80  E-value=0.0014  Score=74.30  Aligned_cols=87  Identities=22%  Similarity=0.265  Sum_probs=62.2

Q ss_pred             CcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhh-----------hcCCc-------------e-eeCHHHHhc
Q psy4626          77 GKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQA-----------CMDGF-------------S-VVKLNEVIR  131 (542)
Q Consensus        77 GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A-----------~~~G~-------------~-v~~l~e~l~  131 (542)
                      =++|+|||.|.+|.++|..+...|.+|+++|+++.+...+           ...|.             . ..++ +.++
T Consensus       314 i~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~d~-~~~~  392 (715)
T 1wdk_A          314 VKQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSY-GDFG  392 (715)
T ss_dssp             CSSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEESSS-TTGG
T ss_pred             CCEEEEECCChhhHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcCeEEECCH-HHHC
Confidence            3579999999999999999999999999999998765442           12231             1 1234 5678


Q ss_pred             CCcEEEEcCCCcccCC----HHHHhccCCCeEEE-ecc
Q psy4626         132 TVDIVVTATGNKNVVT----REHMDKMKNGCVVC-NMG  164 (542)
Q Consensus       132 ~aDvVi~atG~~~lI~----~e~l~~mk~Gailv-nvG  164 (542)
                      +||+||+|.....-+.    .+..+.++++++++ |++
T Consensus       393 ~aDlVIeaV~e~~~vk~~v~~~l~~~~~~~~IlasntS  430 (715)
T 1wdk_A          393 NVDLVVEAVVENPKVKQAVLAEVENHVREDAILASNTS  430 (715)
T ss_dssp             GCSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCS
T ss_pred             CCCEEEEcCCCCHHHHHHHHHHHHhhCCCCeEEEeCCC
Confidence            9999999975332111    23345678999887 444

>2yfq_A Padgh, NAD-GDH, NAD-specific glutamate dehydrogenase; oxidoreductase; 2.94A {Peptoniphilus asaccharolyticus}

Probab=96.76  E-value=0.0034  Score=66.77  Aligned_cols=95  Identities=22%  Similarity=0.327  Sum_probs=57.4

Q ss_pred             cCccccCcEEEEEcCChhHHHHHHHHHhCCCEEE-EEeCCc---------------hhhhhhhc-CC-------ceeeCH
Q psy4626          71 TDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIY-ITEIDP---------------ICALQACM-DG-------FSVVKL  126 (542)
Q Consensus        71 ~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Vi-v~d~dp---------------~r~~~A~~-~G-------~~v~~l  126 (542)
                      .+..+.|++|+|.|+|++|+.+|+.|..+|++|+ +.|.++               ..+.+... .|       ...++.
T Consensus       206 ~g~~l~g~~vaVqG~GnVG~~~a~~L~~~GakvVavsD~~~~~~~G~i~d~~Gld~~~l~~~~~~~g~i~~~~~a~~i~~  285 (421)
T 2yfq_A          206 FGIKMEDAKIAVQGFGNVGTFTVKNIERQGGKVCAIAEWDRNEGNYALYNENGIDFKELLAYKEANKTLIGFPGAERITD  285 (421)
T ss_dssp             TTCCGGGSCEEEECCSHHHHHHHHHHHHTTCCEEECCBCCSSSCSBCCBCSSCCCHHHHHHHHHHHCC------------
T ss_pred             cCCCccCCEEEEECcCHHHHHHHHHHHHCCCEEEEEEecCCCccceEEECCCCCCHHHHHHHHHhcCCcccCCCceEeCc
Confidence            4567899999999999999999999999999988 678773               11111111 11       122333


Q ss_pred             HHHh-cCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCCC
Q psy4626         127 NEVI-RTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSN  167 (542)
Q Consensus       127 ~e~l-~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g~  167 (542)
                      ++.+ ..|||++.|+ ..+.|+.+....+ ...+++..+-++
T Consensus       286 ~~~~~~~~DIliP~A-~~n~i~~~~A~~l-~ak~VvEgAN~P  325 (421)
T 2yfq_A          286 EEFWTKEYDIIVPAA-LENVITGERAKTI-NAKLVCEAANGP  325 (421)
T ss_dssp             ---------CEEECS-CSSCSCHHHHTTC-CCSEEECCSSSC
T ss_pred             cchhcCCccEEEEcC-CcCcCCcccHHHc-CCeEEEeCCccc
Confidence            4444 4799999986 4568888877777 334444444333

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=96.73  E-value=0.0047  Score=58.02  Aligned_cols=64  Identities=19%  Similarity=0.202  Sum_probs=50.3

Q ss_pred             EEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceee--CHH----HHhcCCcEEEEcCCC
Q psy4626          79 QVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVV--KLN----EVIRTVDIVVTATGN  142 (542)
Q Consensus        79 tVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~--~l~----e~l~~aDvVi~atG~  142 (542)
                      +|+|+|. |.||+.+++.|...|.+|+++++++.+.......+..++  ++.    +++.++|+||.+.|.
T Consensus         2 kilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~d~vi~~ag~   72 (224)
T 3h2s_A            2 KIAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQKAADRLGATVATLVKEPLVLTEADLDSVDAVVDALSV   72 (224)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHTCTTSEEEECCGGGCCHHHHTTCSEEEECCCC
T ss_pred             EEEEEcCCCHHHHHHHHHHHHCCCEEEEEEecccccccccCCCceEEecccccccHhhcccCCEEEECCcc
Confidence            6999998 999999999999999999999999876654333454432  221    567899999998875

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=96.71  E-value=0.0021  Score=72.83  Aligned_cols=86  Identities=20%  Similarity=0.285  Sum_probs=60.6

Q ss_pred             cEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhh-----------cCCc-------------e-eeCHHHHhcC
Q psy4626          78 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQAC-----------MDGF-------------S-VVKLNEVIRT  132 (542)
Q Consensus        78 ktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~-----------~~G~-------------~-v~~l~e~l~~  132 (542)
                      ++|+|||.|.+|.++|..+...|.+|+++|+++.+...+.           ..|.             . ..++ +.+++
T Consensus       313 ~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~d~-~~~~~  391 (725)
T 2wtb_A          313 KKVAIIGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVKANLQSRVRKGSMSQEKFEKTMSLLKGSLDY-ESFRD  391 (725)
T ss_dssp             CCEEEECCSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHHHHHTTC----CTTHHHHTTTSEEEESSS-GGGTT
T ss_pred             cEEEEEcCCHhhHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcceEEeCCH-HHHCC
Confidence            5799999999999999999999999999999987654321           1221             1 1234 56789


Q ss_pred             CcEEEEcCCCcccCC----HHHHhccCCCeEEE-ecc
Q psy4626         133 VDIVVTATGNKNVVT----REHMDKMKNGCVVC-NMG  164 (542)
Q Consensus       133 aDvVi~atG~~~lI~----~e~l~~mk~Gailv-nvG  164 (542)
                      ||+||+|.....-+.    .+..+.++++++++ |++
T Consensus       392 aDlVIeaVpe~~~vk~~v~~~l~~~~~~~~IlasntS  428 (725)
T 2wtb_A          392 VDMVIEAVIENISLKQQIFADLEKYCPQHCILASNTS  428 (725)
T ss_dssp             CSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCS
T ss_pred             CCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEeCCC
Confidence            999999875432111    23345678999886 444

>3aoe_E Glutamate dehydrogenase; rossmann fold, NADH, oxidoreductase; 2.60A {Thermus thermophilus}

Probab=96.70  E-value=0.0078  Score=63.93  Aligned_cols=91  Identities=20%  Similarity=0.327  Sum_probs=63.4

Q ss_pred             cCccccCcEEEEEcCChhHHHHHHHHHhCCCEEE-EEeC----------Cchhhhhhhc-CC----ceeeCHHHHh-cCC
Q psy4626          71 TDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIY-ITEI----------DPICALQACM-DG----FSVVKLNEVI-RTV  133 (542)
Q Consensus        71 ~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Vi-v~d~----------dp~r~~~A~~-~G----~~v~~l~e~l-~~a  133 (542)
                      .+..+.|++|+|.|+|.+|+.+|+.|...|++|+ +.|.          |+..+.+... .|    | ..+.++++ ..|
T Consensus       212 ~g~~l~gk~vaVqG~GnVG~~~a~~L~~~GakVVavsD~~G~i~dp~Gld~~~l~~~~~~~g~v~~~-~~~~~e~~~~~~  290 (419)
T 3aoe_E          212 RGLDLRGARVVVQGLGQVGAAVALHAERLGMRVVAVATSMGGMYAPEGLDVAEVLSAYEATGSLPRL-DLAPEEVFGLEA  290 (419)
T ss_dssp             HTCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEEETTEEEECTTCCCHHHHHHHHHHHSSCSCC-CBCTTTGGGSSC
T ss_pred             cCCCccCCEEEEECcCHHHHHHHHHHHHCCCEEEEEEcCCCeEECCCCCCHHHHHHHHHhhCCccee-eccchhhhccCc
Confidence            3567899999999999999999999999999998 7887          4443332211 11    2 22334444 479


Q ss_pred             cEEEEcCCCcccCCHHHHhccCCCeEEEecc
Q psy4626         134 DIVVTATGNKNVVTREHMDKMKNGCVVCNMG  164 (542)
Q Consensus       134 DvVi~atG~~~lI~~e~l~~mk~GailvnvG  164 (542)
                      ||++-|+ ..+.++.+....++- .+|+..+
T Consensus       291 DVliP~A-~~n~i~~~~A~~l~a-k~V~EgA  319 (419)
T 3aoe_E          291 EVLVLAA-REGALDGDRARQVQA-QAVVEVA  319 (419)
T ss_dssp             SEEEECS-CTTCBCHHHHTTCCC-SEEEECS
T ss_pred             eEEEecc-cccccccchHhhCCc-eEEEECC
Confidence            9999986 456888777777733 2444444

>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5

Probab=96.65  E-value=0.0035  Score=62.77  Aligned_cols=88  Identities=18%  Similarity=0.213  Sum_probs=60.7

Q ss_pred             cCcEEEEEcCChhHHHHHHHHHhCCC-EEEEEeCCchhhhh-hhcCCceeeCHHHHhcCCcEEEEcCCCccc--------
Q psy4626          76 GGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQ-ACMDGFSVVKLNEVIRTVDIVVTATGNKNV--------  145 (542)
Q Consensus        76 ~GktVvViG~G~IG~~vA~~l~~~Ga-~Viv~d~dp~r~~~-A~~~G~~v~~l~e~l~~aDvVi~atG~~~l--------  145 (542)
                      .+++++|+|+|..|+.++..|...|+ +|+++++++.++.. +...+....+..+ +..+|+||+||.....        
T Consensus       118 ~~~~vlvlGaGgaarav~~~L~~~G~~~i~v~nRt~~ka~~la~~~~~~~~~~~~-~~~~DivInaTp~gm~~~~~~~~~  196 (271)
T 1npy_A          118 KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYGYAYINSLE-NQQADILVNVTSIGMKGGKEEMDL  196 (271)
T ss_dssp             TTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHHTCEEESCCT-TCCCSEEEECSSTTCTTSTTTTSC
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCccchhhh-cccCCEEEECCCCCccCccccCCC
Confidence            67899999999999999999999998 89999999877543 3333433321111 4689999998853210        


Q ss_pred             -CCHHHHhccCCCeEEEeccCCC
Q psy4626         146 -VTREHMDKMKNGCVVCNMGHSN  167 (542)
Q Consensus       146 -I~~e~l~~mk~GailvnvG~g~  167 (542)
                       +.   .+.++++.+++++...+
T Consensus       197 ~~~---~~~l~~~~~v~DlvY~P  216 (271)
T 1npy_A          197 AFP---KAFIDNASVAFDVVAMP  216 (271)
T ss_dssp             SSC---HHHHHHCSEEEECCCSS
T ss_pred             CCC---HHHcCCCCEEEEeecCC
Confidence             11   22345677777766543

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=96.64  E-value=0.0021  Score=63.32  Aligned_cols=71  Identities=21%  Similarity=0.323  Sum_probs=52.1

Q ss_pred             cccCcEEEEEcCChhHHHHHHHHHhCCC-EEEEEeCCc-------------------hhhhhhh------cCCcee----
Q psy4626          74 MFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDP-------------------ICALQAC------MDGFSV----  123 (542)
Q Consensus        74 ~l~GktVvViG~G~IG~~vA~~l~~~Ga-~Viv~d~dp-------------------~r~~~A~------~~G~~v----  123 (542)
                      .+.+++|+|+|+|.+|..+|..|...|+ +++++|.|.                   .|...+.      .....+    
T Consensus        28 ~l~~~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~~~  107 (249)
T 1jw9_B           28 ALKDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIAITPVN  107 (249)
T ss_dssp             HHHHCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEEC
T ss_pred             HHhCCeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCCcccccCCcccccChhhcCcHHHHHHHHHHHHHCCCcEEEEEe
Confidence            3568899999999999999999999998 999999987                   4433221      112221    


Q ss_pred             --e---CHHHHhcCCcEEEEcCCCcc
Q psy4626         124 --V---KLNEVIRTVDIVVTATGNKN  144 (542)
Q Consensus       124 --~---~l~e~l~~aDvVi~atG~~~  144 (542)
                        .   ++++.+.++|+||+|+++..
T Consensus       108 ~~~~~~~~~~~~~~~DvVi~~~d~~~  133 (249)
T 1jw9_B          108 ALLDDAELAALIAEHDLVLDCTDNVA  133 (249)
T ss_dssp             SCCCHHHHHHHHHTSSEEEECCSSHH
T ss_pred             ccCCHhHHHHHHhCCCEEEEeCCCHH
Confidence              1   13456789999999987643

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=96.63  E-value=0.0058  Score=62.77  Aligned_cols=67  Identities=13%  Similarity=0.091  Sum_probs=51.1

Q ss_pred             CcEEEEEcCChhHHHHHHHHHhCCC-EEEEEeCCchhhhh-hh-------cCC----cee-eCHHHHhcCCcEEEEcCCC
Q psy4626          77 GKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQ-AC-------MDG----FSV-VKLNEVIRTVDIVVTATGN  142 (542)
Q Consensus        77 GktVvViG~G~IG~~vA~~l~~~Ga-~Viv~d~dp~r~~~-A~-------~~G----~~v-~~l~e~l~~aDvVi~atG~  142 (542)
                      ..+|+|+|+|.+|..+|..|...|. +|..+|+++.++.. +.       ..+    ... .+++++++++|+||.+.|.
T Consensus         9 ~~kI~VIGaG~vG~~lA~~la~~g~~~V~L~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~ea~~~aDiVi~a~g~   88 (331)
T 1pzg_A            9 RKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALTGADCVIVTAGL   88 (331)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHTTCSEEEECCSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEECChhHHHHHHHHHHhhhhccCCCCEEEEeCCHHHHhCCCCEEEEccCC
Confidence            4589999999999999999998887 99999999865543 11       011    112 4667789999999998764


Q ss_pred             c
Q psy4626         143 K  143 (542)
Q Consensus       143 ~  143 (542)
                      +
T Consensus        89 p   89 (331)
T 1pzg_A           89 T   89 (331)
T ss_dssp             S
T ss_pred             C
Confidence            3

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=96.62  E-value=0.0076  Score=59.74  Aligned_cols=68  Identities=19%  Similarity=0.235  Sum_probs=50.5

Q ss_pred             cccCcEEEEEcCC-hhHHHHHHHHHhCCCEEEEEeCCchhhhhh----hcCCcee-------eCHH---H-------Hhc
Q psy4626          74 MFGGKQVVLCGYG-EVGKGCCQSLKGLGCVIYITEIDPICALQA----CMDGFSV-------VKLN---E-------VIR  131 (542)
Q Consensus        74 ~l~GktVvViG~G-~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A----~~~G~~v-------~~l~---e-------~l~  131 (542)
                      .+.||+++|.|.+ -||+.+|+.|...|++|+++|+++.++.+.    ...|.++       .+.+   +       .+.
T Consensus         4 sL~gKvalVTGas~GIG~aiA~~la~~Ga~Vv~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~G   83 (254)
T 4fn4_A            4 SLKNKVVIVTGAGSGIGRAIAKKFALNDSIVVAVELLEDRLNQIVQELRGMGKEVLGVKADVSKKKDVEEFVRRTFETYS   83 (254)
T ss_dssp             GGTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            5789999999986 599999999999999999999998765432    1233221       1221   1       135


Q ss_pred             CCcEEEEcCC
Q psy4626         132 TVDIVVTATG  141 (542)
Q Consensus       132 ~aDvVi~atG  141 (542)
                      ..|++|.+.|
T Consensus        84 ~iDiLVNNAG   93 (254)
T 4fn4_A           84 RIDVLCNNAG   93 (254)
T ss_dssp             CCCEEEECCC
T ss_pred             CCCEEEECCc
Confidence            7999999876

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}

Probab=96.61  E-value=0.0024  Score=61.34  Aligned_cols=91  Identities=13%  Similarity=0.126  Sum_probs=61.9

Q ss_pred             cCcEEEEEc-CChhHHHHHHHHHhCC-CEEEEEeCCchhhhhhhcCCceee-----C---HHHHhcCCcEEEEcCCCccc
Q psy4626          76 GGKQVVLCG-YGEVGKGCCQSLKGLG-CVIYITEIDPICALQACMDGFSVV-----K---LNEVIRTVDIVVTATGNKNV  145 (542)
Q Consensus        76 ~GktVvViG-~G~IG~~vA~~l~~~G-a~Viv~d~dp~r~~~A~~~G~~v~-----~---l~e~l~~aDvVi~atG~~~l  145 (542)
                      ..++|+|+| .|.||+.+++.|...| .+|+++++++.+.......++.++     +   ++++++++|+||.+.|....
T Consensus        22 ~mk~vlVtGatG~iG~~l~~~L~~~G~~~V~~~~R~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~vv~~a~~~~~  101 (236)
T 3qvo_A           22 HMKNVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKIHKPYPTNSQIIMGDVLNHAALKQAMQGQDIVYANLTGEDL  101 (236)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHTTCTTEEEEEEESSGGGSCSSCCTTEEEEECCTTCHHHHHHHHTTCSEEEEECCSTTH
T ss_pred             cccEEEEEeCCcHHHHHHHHHHHhCCCceEEEEEcChhhhcccccCCcEEEEecCCCHHHHHHHhcCCCEEEEcCCCCch
Confidence            467999999 5999999999999999 899999998876543223343322     2   24567899999987764322


Q ss_pred             C--CHHHHhccC--CCeEEEeccCC
Q psy4626         146 V--TREHMDKMK--NGCVVCNMGHS  166 (542)
Q Consensus       146 I--~~e~l~~mk--~GailvnvG~g  166 (542)
                      .  ....++.|+  ..+.+|+++..
T Consensus       102 ~~~~~~~~~~~~~~~~~~iV~iSS~  126 (236)
T 3qvo_A          102 DIQANSVIAAMKACDVKRLIFVLSL  126 (236)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             hHHHHHHHHHHHHcCCCEEEEEecc
Confidence            1  123455553  23467777763

>2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6

Probab=96.61  E-value=0.00071  Score=67.27  Aligned_cols=85  Identities=14%  Similarity=0.128  Sum_probs=56.7

Q ss_pred             EEEEEcCChhHHHHHHHHHhCCCEE-EEEeCCchhhhhhh-cCCceeeCHHHHhcCCcEEEEcCCCcccCCHHHHhcc-C
Q psy4626          79 QVVLCGYGEVGKGCCQSLKGLGCVI-YITEIDPICALQAC-MDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHMDKM-K  155 (542)
Q Consensus        79 tVvViG~G~IG~~vA~~l~~~Ga~V-iv~d~dp~r~~~A~-~~G~~v~~l~e~l~~aDvVi~atG~~~lI~~e~l~~m-k  155 (542)
                      +|+|||+|.+|..+++.+... .+| .++|+++.+..... ..|....+++++++.+|+||.|+.... + .+.+..+ +
T Consensus         4 ~I~iIG~G~mG~~la~~l~~~-~~v~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~DvVilav~~~~-~-~~v~~~l~~   80 (276)
T 2i76_A            4 VLNFVGTGTLTRFFLECLKDR-YEIGYILSRSIDRARNLAEVYGGKAATLEKHPELNGVVFVIVPDRY-I-KTVANHLNL   80 (276)
T ss_dssp             CCEEESCCHHHHHHHHTTC-----CCCEECSSHHHHHHHHHHTCCCCCSSCCCCC---CEEECSCTTT-H-HHHHTTTCC
T ss_pred             eEEEEeCCHHHHHHHHHHHHc-CcEEEEEeCCHHHHHHHHHHcCCccCCHHHHHhcCCEEEEeCChHH-H-HHHHHHhcc
Confidence            699999999999999998776 888 59999987765432 334423355667788999999985533 3 4566666 5


Q ss_pred             CCeEEEeccCC
Q psy4626         156 NGCVVCNMGHS  166 (542)
Q Consensus       156 ~GailvnvG~g  166 (542)
                      ++.++++++.+
T Consensus        81 ~~~ivi~~s~~   91 (276)
T 2i76_A           81 GDAVLVHCSGF   91 (276)
T ss_dssp             SSCCEEECCSS
T ss_pred             CCCEEEECCCC
Confidence            78888887743

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=96.60  E-value=0.0056  Score=56.39  Aligned_cols=66  Identities=17%  Similarity=0.183  Sum_probs=49.5

Q ss_pred             CcEEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceee-----C---HHHHhcCCcEEEEcCCC
Q psy4626          77 GKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVV-----K---LNEVIRTVDIVVTATGN  142 (542)
Q Consensus        77 GktVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~-----~---l~e~l~~aDvVi~atG~  142 (542)
                      +++|+|+|. |.||+.+++.|...|.+|+++++++.+.......++.+.     +   +.++++++|+||.+.|.
T Consensus         3 ~~~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~   77 (206)
T 1hdo_A            3 VKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGPRPAHVVVGDVLQAADVDKTVAGQDAVIVLLGT   77 (206)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSSSCCCSEEEESCTTSHHHHHHHHTTCSEEEECCCC
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCCCeEEEEEeChhhcccccCCceEEEEecCCCHHHHHHHHcCCCEEEECccC
Confidence            479999998 999999999999999999999998865432212233321     2   23556889999998764

>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua}

Probab=96.60  E-value=0.0028  Score=65.45  Aligned_cols=83  Identities=22%  Similarity=0.244  Sum_probs=61.2

Q ss_pred             cEEEEEcCChhHHHHHHHHHhC-CCEEE-EEeCCchhhhhhhcCCce-eeCHHHHhc--CCcEEEEcCCCcccCCHHHHh
Q psy4626          78 KQVVLCGYGEVGKGCCQSLKGL-GCVIY-ITEIDPICALQACMDGFS-VVKLNEVIR--TVDIVVTATGNKNVVTREHMD  152 (542)
Q Consensus        78 ktVvViG~G~IG~~vA~~l~~~-Ga~Vi-v~d~dp~r~~~A~~~G~~-v~~l~e~l~--~aDvVi~atG~~~lI~~e~l~  152 (542)
                      -+|+|||+|.+|...+..++.. +++|+ ++|+++.++..+...|.. +.++++++.  +.|+|+.||.+..-. .....
T Consensus         6 ~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~a~~~g~~~~~~~~~ll~~~~~D~V~i~tp~~~h~-~~~~~   84 (359)
T 3e18_A            6 YQLVIVGYGGMGSYHVTLASAADNLEVHGVFDILAEKREAAAQKGLKIYESYEAVLADEKVDAVLIATPNDSHK-ELAIS   84 (359)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTSTTEEEEEEECSSHHHHHHHHTTTCCBCSCHHHHHHCTTCCEEEECSCGGGHH-HHHHH
T ss_pred             CcEEEECcCHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHhcCCceeCCHHHHhcCCCCCEEEEcCCcHHHH-HHHHH
Confidence            4799999999999999998877 67765 679999887666666765 356888885  799999998653222 23455


Q ss_pred             ccCCCeEEE
Q psy4626         153 KMKNGCVVC  161 (542)
Q Consensus       153 ~mk~Gailv  161 (542)
                      .++.|.-++
T Consensus        85 al~aGkhVl   93 (359)
T 3e18_A           85 ALEAGKHVV   93 (359)
T ss_dssp             HHHTTCEEE
T ss_pred             HHHCCCCEE
Confidence            666676444

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=96.57  E-value=0.0073  Score=61.19  Aligned_cols=87  Identities=11%  Similarity=0.082  Sum_probs=59.3

Q ss_pred             cEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce---------------e-eCHHHHhcCCcEEEEcCC
Q psy4626          78 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS---------------V-VKLNEVIRTVDIVVTATG  141 (542)
Q Consensus        78 ktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~---------------v-~~l~e~l~~aDvVi~atG  141 (542)
                      .+|+|+|+|.+|..+|..|...|.+|+++++++...  ....|..               + .+.+++.+.+|+||.|+-
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~~~~--i~~~Gl~~~~~~~g~~~~~~~~~~~~~~~~~~~~DlVilavK   80 (320)
T 3i83_A            3 LNILVIGTGAIGSFYGALLAKTGHCVSVVSRSDYET--VKAKGIRIRSATLGDYTFRPAAVVRSAAELETKPDCTLLCIK   80 (320)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHTTCEEEEECSTTHHH--HHHHCEEEEETTTCCEEECCSCEESCGGGCSSCCSEEEECCC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCChHHH--HHhCCcEEeecCCCcEEEeeeeeECCHHHcCCCCCEEEEecC
Confidence            479999999999999999999999999999887422  1122221               1 233444458999999986


Q ss_pred             CcccCC--HHHHhccCCCeEEEeccCC
Q psy4626         142 NKNVVT--REHMDKMKNGCVVCNMGHS  166 (542)
Q Consensus       142 ~~~lI~--~e~l~~mk~GailvnvG~g  166 (542)
                      ...+..  .+.-..++++..++.+.-|
T Consensus        81 ~~~~~~~l~~l~~~l~~~t~Iv~~~nG  107 (320)
T 3i83_A           81 VVEGADRVGLLRDAVAPDTGIVLISNG  107 (320)
T ss_dssp             CCTTCCHHHHHTTSCCTTCEEEEECSS
T ss_pred             CCChHHHHHHHHhhcCCCCEEEEeCCC
Confidence            544332  1222345677877766544

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=96.56  E-value=0.0052  Score=62.14  Aligned_cols=66  Identities=15%  Similarity=0.209  Sum_probs=49.7

Q ss_pred             cEEEEEcCChhHHHHHHHHHhCC--CEEEEEeCCchhhhhhh-cC---------Ccee--eCHHHHhcCCcEEEEcCCCc
Q psy4626          78 KQVVLCGYGEVGKGCCQSLKGLG--CVIYITEIDPICALQAC-MD---------GFSV--VKLNEVIRTVDIVVTATGNK  143 (542)
Q Consensus        78 ktVvViG~G~IG~~vA~~l~~~G--a~Viv~d~dp~r~~~A~-~~---------G~~v--~~l~e~l~~aDvVi~atG~~  143 (542)
                      ++|+|+|+|.+|..+|..|...|  .+|+++|+++.++.... ..         ...+  .+. +.++++|+||.+++.+
T Consensus         2 ~kI~VIGaG~~G~~la~~L~~~g~~~~V~l~d~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~-~~~~~aDvViiav~~~   80 (309)
T 1hyh_A            2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVINDW-AALADADVVISTLGNI   80 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESCG-GGGTTCSEEEECCSCG
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHHHHhhhhhcCCCeEEEeCCH-HHhCCCCEEEEecCCc
Confidence            47999999999999999998888  59999999986653221 11         1222  344 6788999999998864


Q ss_pred             c
Q psy4626         144 N  144 (542)
Q Consensus       144 ~  144 (542)
                      .
T Consensus        81 ~   81 (309)
T 1hyh_A           81 K   81 (309)
T ss_dssp             G
T ss_pred             c
Confidence            4

>1v9l_A Glutamate dehydrogenase; protein-NAD complex, oxidoreductase; HET: NAD; 2.80A {Pyrobaculum islandicum} SCOP: c.2.1.7 c.58.1.1

Probab=96.53  E-value=0.0093  Score=63.39  Aligned_cols=83  Identities=24%  Similarity=0.305  Sum_probs=58.3

Q ss_pred             CccccCcEEEEEcCChhHHHHHHHHHhCCCEEE-EEeC----------Cchhhhhhhc-CCc------------eee-CH
Q psy4626          72 DVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIY-ITEI----------DPICALQACM-DGF------------SVV-KL  126 (542)
Q Consensus        72 ~~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Vi-v~d~----------dp~r~~~A~~-~G~------------~v~-~l  126 (542)
                      +..+.|++|+|.|+|++|..+++.|..+|++|+ +.|.          |+..+.+... .|.            ..+ +.
T Consensus       205 g~~l~gk~vaVqG~GnVG~~aa~~L~e~GakVVavsD~~G~i~dp~GlD~~~l~~~k~~~g~~~v~~y~~~~~~~~~~~~  284 (421)
T 1v9l_A          205 WGGIEGKTVAIQGMGNVGRWTAYWLEKMGAKVIAVSDINGVAYRKEGLNVELIQKNKGLTGPALVELFTTKDNAEFVKNP  284 (421)
T ss_dssp             HSCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSCEEECTTCCCTHHHHHTTTSCHHHHHHHHHHTSCCCCCSST
T ss_pred             CCCcCCCEEEEECcCHHHHHHHHHHHHCCCEEEEEECCCcEEECCCCCCHHHHHHHHHhhCCccccccccccCceEeCCc
Confidence            457899999999999999999999999999988 6676          3433322211 121            233 44


Q ss_pred             HHHh-cCCcEEEEcCCCcccCCHHHHhccC
Q psy4626         127 NEVI-RTVDIVVTATGNKNVVTREHMDKMK  155 (542)
Q Consensus       127 ~e~l-~~aDvVi~atG~~~lI~~e~l~~mk  155 (542)
                      ++.+ ..|||++-|. ....|+.+....++
T Consensus       285 ~~~~~~~~Dil~P~A-~~~~I~~~~a~~l~  313 (421)
T 1v9l_A          285 DAIFKLDVDIFVPAA-IENVIRGDNAGLVK  313 (421)
T ss_dssp             TGGGGCCCSEEEECS-CSSCBCTTTTTTCC
T ss_pred             hhhhcCCccEEEecC-cCCccchhhHHHcC
Confidence            5555 5799999976 44577766666663

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=96.53  E-value=0.012  Score=54.95  Aligned_cols=63  Identities=16%  Similarity=0.193  Sum_probs=49.2

Q ss_pred             EEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceee--CH----HHHhcCCcEEEEcCCC
Q psy4626          79 QVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVV--KL----NEVIRTVDIVVTATGN  142 (542)
Q Consensus        79 tVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~--~l----~e~l~~aDvVi~atG~  142 (542)
                      +|+|+|. |.||+.+++.|...|.+|+++++++.+..... .+..++  ++    .+++.++|+||.+.|.
T Consensus         2 kvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~-~~~~~~~~D~~d~~~~~~~~~d~vi~~ag~   71 (221)
T 3ew7_A            2 KIGIIGATGRAGSRILEEAKNRGHEVTAIVRNAGKITQTH-KDINILQKDIFDLTLSDLSDQNVVVDAYGI   71 (221)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCSHHHHHHC-SSSEEEECCGGGCCHHHHTTCSEEEECCCS
T ss_pred             eEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCchhhhhcc-CCCeEEeccccChhhhhhcCCCEEEECCcC
Confidence            6999995 99999999999999999999999987654322 444432  22    1567899999998775

>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*

Probab=96.52  E-value=0.003  Score=67.79  Aligned_cols=90  Identities=14%  Similarity=0.277  Sum_probs=64.1

Q ss_pred             cccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhh--cCCceee--CH-HHHhcCCcEEEEcCCCcccCCH
Q psy4626          74 MFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQAC--MDGFSVV--KL-NEVIRTVDIVVTATGNKNVVTR  148 (542)
Q Consensus        74 ~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~--~~G~~v~--~l-~e~l~~aDvVi~atG~~~lI~~  148 (542)
                      .+.|++|+|+|.|.+|...++.|...|++|+|++.+........  ..+..+.  .. ++.+.++|+||.+||.+. +|.
T Consensus         9 ~l~~~~vlVvGgG~va~~k~~~L~~~ga~V~vi~~~~~~~~~~l~~~~~i~~~~~~~~~~~l~~~~lVi~at~~~~-~n~   87 (457)
T 1pjq_A            9 QLRDRDCLIVGGGDVAERKARLLLEAGARLTVNALTFIPQFTVWANEGMLTLVEGPFDETLLDSCWLAIAATDDDT-VNQ   87 (457)
T ss_dssp             CCBTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSCCHHHHHHHTTTSCEEEESSCCGGGGTTCSEEEECCSCHH-HHH
T ss_pred             ECCCCEEEEECCCHHHHHHHHHHHhCcCEEEEEcCCCCHHHHHHHhcCCEEEEECCCCccccCCccEEEEcCCCHH-HHH
Confidence            46899999999999999999999999999999986543322221  1233332  11 234678999999998764 344


Q ss_pred             HHHhccCCCeEEEecc
Q psy4626         149 EHMDKMKNGCVVCNMG  164 (542)
Q Consensus       149 e~l~~mk~GailvnvG  164 (542)
                      ......+.-++.+|+.
T Consensus        88 ~i~~~a~~~~i~vn~~  103 (457)
T 1pjq_A           88 RVSDAAESRRIFCNVV  103 (457)
T ss_dssp             HHHHHHHHTTCEEEET
T ss_pred             HHHHHHHHcCCEEEEC
Confidence            5566666667777765

>4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti}

Probab=96.52  E-value=0.0041  Score=63.11  Aligned_cols=83  Identities=19%  Similarity=0.226  Sum_probs=60.3

Q ss_pred             cEEEEEcCChhHHHHHHHHHhC-CCEEE-EEeCCchhhhh-hhcCCceeeCHHHHhc--CCcEEEEcCCCcccCCHHHHh
Q psy4626          78 KQVVLCGYGEVGKGCCQSLKGL-GCVIY-ITEIDPICALQ-ACMDGFSVVKLNEVIR--TVDIVVTATGNKNVVTREHMD  152 (542)
Q Consensus        78 ktVvViG~G~IG~~vA~~l~~~-Ga~Vi-v~d~dp~r~~~-A~~~G~~v~~l~e~l~--~aDvVi~atG~~~lI~~e~l~  152 (542)
                      .+|+|||+|.+|...+..++.. +++++ ++|+++.++.. +...|..+.++++++.  ++|+|+.|+.+..-. .....
T Consensus         4 ~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~tp~~~h~-~~~~~   82 (331)
T 4hkt_A            4 VRFGLLGAGRIGKVHAKAVSGNADARLVAVADAFPAAAEAIAGAYGCEVRTIDAIEAAADIDAVVICTPTDTHA-DLIER   82 (331)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCEECCHHHHHHCTTCCEEEECSCGGGHH-HHHHH
T ss_pred             eEEEEECCCHHHHHHHHHHhhCCCcEEEEEECCCHHHHHHHHHHhCCCcCCHHHHhcCCCCCEEEEeCCchhHH-HHHHH
Confidence            3799999999999999999876 77776 68999987653 3445666667888885  899999998543222 23445


Q ss_pred             ccCCCeEEE
Q psy4626         153 KMKNGCVVC  161 (542)
Q Consensus       153 ~mk~Gailv  161 (542)
                      .++.|.-++
T Consensus        83 al~~gk~v~   91 (331)
T 4hkt_A           83 FARAGKAIF   91 (331)
T ss_dssp             HHHTTCEEE
T ss_pred             HHHcCCcEE
Confidence            566665444

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=96.50  E-value=0.0075  Score=61.85  Aligned_cols=65  Identities=17%  Similarity=0.216  Sum_probs=49.7

Q ss_pred             cEEEEEcCChhHHHHHHHHHhCCC-EEEEEeCCchhhhhhh-c----------C-Ccee-eCHHHHhcCCcEEEEcCCCc
Q psy4626          78 KQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQAC-M----------D-GFSV-VKLNEVIRTVDIVVTATGNK  143 (542)
Q Consensus        78 ktVvViG~G~IG~~vA~~l~~~Ga-~Viv~d~dp~r~~~A~-~----------~-G~~v-~~l~e~l~~aDvVi~atG~~  143 (542)
                      ++|+|+|+|.+|..+|..+...|. +|..+|+++.++.... .          . -... .++ +++++||+||.+.|.+
T Consensus        15 ~kI~ViGaG~vG~~iA~~la~~g~~~V~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t~d~-~al~~aD~VI~avg~p   93 (328)
T 2hjr_A           15 KKISIIGAGQIGSTIALLLGQKDLGDVYMFDIIEGVPQGKALDLNHCMALIGSPAKIFGENNY-EYLQNSDVVIITAGVP   93 (328)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGTTCSEEEECCSCC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhHhhccCCCCEEEECCCH-HHHCCCCEEEEcCCCC
Confidence            689999999999999999999998 9999999986654211 0          0 1122 344 6789999999998654

>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae}

Probab=96.49  E-value=0.0039  Score=67.14  Aligned_cols=91  Identities=16%  Similarity=0.142  Sum_probs=60.4

Q ss_pred             ccccCcEEEEEcCChhHHHHHHHHHhC-CCEEEEEeCCchhhhhhh-cCCcee--e------CHHHHhcCCcEEEEcCCC
Q psy4626          73 VMFGGKQVVLCGYGEVGKGCCQSLKGL-GCVIYITEIDPICALQAC-MDGFSV--V------KLNEVIRTVDIVVTATGN  142 (542)
Q Consensus        73 ~~l~GktVvViG~G~IG~~vA~~l~~~-Ga~Viv~d~dp~r~~~A~-~~G~~v--~------~l~e~l~~aDvVi~atG~  142 (542)
                      ..+.+++|+|+|+|.+|+.++..|... |.+|+++++++.++.... ..+...  .      ++.+++.++|+||.|++.
T Consensus        19 ~~l~~k~VlIiGAGgiG~aia~~L~~~~g~~V~v~~R~~~ka~~la~~~~~~~~~~D~~d~~~l~~~l~~~DvVIn~tp~   98 (467)
T 2axq_A           19 GRHMGKNVLLLGSGFVAQPVIDTLAANDDINVTVACRTLANAQALAKPSGSKAISLDVTDDSALDKVLADNDVVISLIPY   98 (467)
T ss_dssp             ----CEEEEEECCSTTHHHHHHHHHTSTTEEEEEEESSHHHHHHHHGGGTCEEEECCTTCHHHHHHHHHTSSEEEECSCG
T ss_pred             cCCCCCEEEEECChHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhcCCcEEEEecCCHHHHHHHHcCCCEEEECCch
Confidence            456789999999999999999999987 679999999987754322 223321  1      234567899999999875


Q ss_pred             cccCCHH-HHhccCCCeEEEeccC
Q psy4626         143 KNVVTRE-HMDKMKNGCVVCNMGH  165 (542)
Q Consensus       143 ~~lI~~e-~l~~mk~GailvnvG~  165 (542)
                      .  .... ....++.|..++.+..
T Consensus        99 ~--~~~~v~~a~l~~g~~vvd~~~  120 (467)
T 2axq_A           99 T--FHPNVVKSAIRTKTDVVTSSY  120 (467)
T ss_dssp             G--GHHHHHHHHHHHTCEEEECSC
T ss_pred             h--hhHHHHHHHHhcCCEEEEeec
Confidence            3  1111 1223456777766543

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=96.48  E-value=0.0033  Score=64.20  Aligned_cols=85  Identities=15%  Similarity=0.154  Sum_probs=60.1

Q ss_pred             cEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCcee--------------eCHHHHhcCCcEEEEcCCCc
Q psy4626          78 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV--------------VKLNEVIRTVDIVVTATGNK  143 (542)
Q Consensus        78 ktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v--------------~~l~e~l~~aDvVi~atG~~  143 (542)
                      .+|+|+|+|.+|..+|..|...|.+|++++++ .+.......|...              .++++ +..+|+||.|+.+.
T Consensus         4 mkI~IiGaG~~G~~~a~~L~~~g~~V~~~~r~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~D~Vilavk~~   81 (335)
T 3ghy_A            4 TRICIVGAGAVGGYLGARLALAGEAINVLARG-ATLQALQTAGLRLTEDGATHTLPVRATHDAAA-LGEQDVVIVAVKAP   81 (335)
T ss_dssp             CCEEEESCCHHHHHHHHHHHHTTCCEEEECCH-HHHHHHHHTCEEEEETTEEEEECCEEESCHHH-HCCCSEEEECCCHH
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCEEEEEECh-HHHHHHHHCCCEEecCCCeEEEeeeEECCHHH-cCCCCEEEEeCCch
Confidence            57999999999999999999999999999975 3333333445432              13444 58899999998653


Q ss_pred             ccCCHHHHh----ccCCCeEEEeccCC
Q psy4626         144 NVVTREHMD----KMKNGCVVCNMGHS  166 (542)
Q Consensus       144 ~lI~~e~l~----~mk~GailvnvG~g  166 (542)
                      .+  .+.++    .++++..++.+.-|
T Consensus        82 ~~--~~~~~~l~~~l~~~~~iv~~~nG  106 (335)
T 3ghy_A           82 AL--ESVAAGIAPLIGPGTCVVVAMNG  106 (335)
T ss_dssp             HH--HHHHGGGSSSCCTTCEEEECCSS
T ss_pred             hH--HHHHHHHHhhCCCCCEEEEECCC
Confidence            32  23444    34578888876554

>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}

Probab=96.47  E-value=0.0083  Score=59.49  Aligned_cols=93  Identities=19%  Similarity=0.348  Sum_probs=63.8

Q ss_pred             cccCcEEEEEcCC-hhHHHHHHHHHhCCCEEEEEeCCchhhhhh----hcCCcee-------eCHH---H----H---hc
Q psy4626          74 MFGGKQVVLCGYG-EVGKGCCQSLKGLGCVIYITEIDPICALQA----CMDGFSV-------VKLN---E----V---IR  131 (542)
Q Consensus        74 ~l~GktVvViG~G-~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A----~~~G~~v-------~~l~---e----~---l~  131 (542)
                      .+.||+++|.|.+ -||+.+|+.|...|++|+++++++.++.+.    ...|..+       .+.+   +    +   +.
T Consensus         6 ~L~gKvalVTGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~l~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~G   85 (255)
T 4g81_D            6 DLTGKTALVTGSARGLGFAYAEGLAAAGARVILNDIRATLLAESVDTLTRKGYDAHGVAFDVTDELAIEAAFSKLDAEGI   85 (255)
T ss_dssp             CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHHHHHHTTC
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHCC
Confidence            5789999999996 599999999999999999999998765432    2233221       1221   1    1   24


Q ss_pred             CCcEEEEcCCCc---ccCC---------------------HHHHhcc---CCCeEEEeccCC
Q psy4626         132 TVDIVVTATGNK---NVVT---------------------REHMDKM---KNGCVVCNMGHS  166 (542)
Q Consensus       132 ~aDvVi~atG~~---~lI~---------------------~e~l~~m---k~GailvnvG~g  166 (542)
                      ..|++|.+.|..   ++.+                     +..+..|   +.++.|+|+++.
T Consensus        86 ~iDiLVNNAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~~G~IVnisS~  147 (255)
T 4g81_D           86 HVDILINNAGIQYRKPMVELELENWQKVIDTNLTSAFLVSRSAAKRMIARNSGGKIINIGSL  147 (255)
T ss_dssp             CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCG
T ss_pred             CCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHccCCCEEEEEeeh
Confidence            789999977621   1111                     3445666   357899998864

>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*

Probab=96.47  E-value=0.0048  Score=64.42  Aligned_cols=84  Identities=12%  Similarity=0.112  Sum_probs=59.1

Q ss_pred             cEEEEEcCChhHHHHHHHHHh-CCCEEEEEe---CCchhhhhh-hcCC------------c--------eeeCHHHHhcC
Q psy4626          78 KQVVLCGYGEVGKGCCQSLKG-LGCVIYITE---IDPICALQA-CMDG------------F--------SVVKLNEVIRT  132 (542)
Q Consensus        78 ktVvViG~G~IG~~vA~~l~~-~Ga~Viv~d---~dp~r~~~A-~~~G------------~--------~v~~l~e~l~~  132 (542)
                      .+|+|+|+|.+|..+|..|.. .|.+|++++   +++.+...+ ...|            .        ...++++++..
T Consensus         3 mkI~ViGaG~~G~~~a~~La~~~G~~V~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~   82 (404)
T 3c7a_A            3 VKVCVCGGGNGAHTLSGLAASRDGVEVRVLTLFADEAERWTKALGADELTVIVNEKDGTQTEVKSRPKVITKDPEIAISG   82 (404)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTSTTEEEEEECCSTTHHHHHHHHHTTSCEEEEEECSSSCEEEEEECCSEEESCHHHHHTT
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCCCEEEEEeCCCCcHHHHHHHHhhccceeeeecCCCccceeeccceEEeCCHHHHhCC
Confidence            379999999999999999977 499999999   766554432 2222            1        11246677889


Q ss_pred             CcEEEEcCCCcccCCHHHHh----ccCCCeEEEec
Q psy4626         133 VDIVVTATGNKNVVTREHMD----KMKNGCVVCNM  163 (542)
Q Consensus       133 aDvVi~atG~~~lI~~e~l~----~mk~Gailvnv  163 (542)
                      +|+||.|+.+...  .+.++    .++++.++++.
T Consensus        83 aD~Vilav~~~~~--~~v~~~l~~~l~~~~ivv~~  115 (404)
T 3c7a_A           83 ADVVILTVPAFAH--EGYFQAMAPYVQDSALIVGL  115 (404)
T ss_dssp             CSEEEECSCGGGH--HHHHHHHTTTCCTTCEEEET
T ss_pred             CCEEEEeCchHHH--HHHHHHHHhhCCCCcEEEEc
Confidence            9999999865432  23333    45678888874

>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1}

Probab=96.43  E-value=0.0051  Score=62.55  Aligned_cols=83  Identities=14%  Similarity=0.171  Sum_probs=59.7

Q ss_pred             cEEEEEcCChhHHHHHHHHH-h-CCCEE-EEEeCCchhhhh-hhcCCc-e-eeCHHHHhc--CCcEEEEcCCCcccCCHH
Q psy4626          78 KQVVLCGYGEVGKGCCQSLK-G-LGCVI-YITEIDPICALQ-ACMDGF-S-VVKLNEVIR--TVDIVVTATGNKNVVTRE  149 (542)
Q Consensus        78 ktVvViG~G~IG~~vA~~l~-~-~Ga~V-iv~d~dp~r~~~-A~~~G~-~-v~~l~e~l~--~aDvVi~atG~~~lI~~e  149 (542)
                      .+|+|+|+|.+|+..+..++ . .|+++ .++|+++.++.. +...|. . +.+.++++.  ++|+|+.|+.+.... ..
T Consensus         9 ~~v~iiG~G~ig~~~~~~l~~~~~~~~~vav~d~~~~~~~~~a~~~g~~~~~~~~~~~l~~~~~D~V~i~tp~~~h~-~~   87 (346)
T 3cea_A            9 LRAAIIGLGRLGERHARHLVNKIQGVKLVAACALDSNQLEWAKNELGVETTYTNYKDMIDTENIDAIFIVAPTPFHP-EM   87 (346)
T ss_dssp             EEEEEECCSTTHHHHHHHHHHTCSSEEEEEEECSCHHHHHHHHHTTCCSEEESCHHHHHTTSCCSEEEECSCGGGHH-HH
T ss_pred             ceEEEEcCCHHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHHhCCCcccCCHHHHhcCCCCCEEEEeCChHhHH-HH
Confidence            48999999999999999887 5 47774 578999987653 344465 3 456788875  799999998754322 23


Q ss_pred             HHhccCCCeEEE
Q psy4626         150 HMDKMKNGCVVC  161 (542)
Q Consensus       150 ~l~~mk~Gailv  161 (542)
                      ....++.|..++
T Consensus        88 ~~~al~~G~~v~   99 (346)
T 3cea_A           88 TIYAMNAGLNVF   99 (346)
T ss_dssp             HHHHHHTTCEEE
T ss_pred             HHHHHHCCCEEE
Confidence            456677776544

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=96.42  E-value=0.013  Score=59.99  Aligned_cols=90  Identities=14%  Similarity=0.120  Sum_probs=60.3

Q ss_pred             cCcEEEEEcCChhHHHHHHHHHhCCC-EEEEEeCCc-hhhhhhhc-----------CCcee--eCHHHHhcCCcEEEEcC
Q psy4626          76 GGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDP-ICALQACM-----------DGFSV--VKLNEVIRTVDIVVTAT  140 (542)
Q Consensus        76 ~GktVvViG~G~IG~~vA~~l~~~Ga-~Viv~d~dp-~r~~~A~~-----------~G~~v--~~l~e~l~~aDvVi~at  140 (542)
                      ..++|+|+|.|.+|..+|..+...|. +|+.+|+++ ....++..           ....+  .+..+.+++||+||.+.
T Consensus         7 ~~~kv~ViGaG~vG~~ia~~l~~~g~~~v~l~D~~~~~~~~~g~a~dl~~~~~~~~~~~~i~~t~d~~a~~~aDvVIiaa   86 (315)
T 3tl2_A            7 KRKKVSVIGAGFTGATTAFLLAQKELADVVLVDIPQLENPTKGKALDMLEASPVQGFDANIIGTSDYADTADSDVVVITA   86 (315)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCGGGHHHHHHHHHHHHHHHHHHTCCCCEEEESCGGGGTTCSEEEECC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeccchHHHHHHhhhhHHHhhhhccCCCEEEEcCCHHHhCCCCEEEEeC
Confidence            46799999999999999999998898 999999984 22111110           01111  22246789999999998


Q ss_pred             CCccc--------C--C-------HHHHhccCCCeEEEeccC
Q psy4626         141 GNKNV--------V--T-------REHMDKMKNGCVVCNMGH  165 (542)
Q Consensus       141 G~~~l--------I--~-------~e~l~~mk~GailvnvG~  165 (542)
                      |.+.-        +  |       .+.+....|.+++++++-
T Consensus        87 g~p~kpg~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vlvvsN  128 (315)
T 3tl2_A           87 GIARKPGMSRDDLVATNSKIMKSITRDIAKHSPNAIIVVLTN  128 (315)
T ss_dssp             SCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEECCC
Confidence            74421        1  0       122333457888888873

>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum}

Probab=96.41  E-value=0.0047  Score=62.96  Aligned_cols=83  Identities=18%  Similarity=0.182  Sum_probs=59.2

Q ss_pred             cEEEEEcCChhHHHHHHHHHhC-CCEEE-EEeCCchhhhh-hhcCCce-eeCHHHHhc--CCcEEEEcCCCcccCCHHHH
Q psy4626          78 KQVVLCGYGEVGKGCCQSLKGL-GCVIY-ITEIDPICALQ-ACMDGFS-VVKLNEVIR--TVDIVVTATGNKNVVTREHM  151 (542)
Q Consensus        78 ktVvViG~G~IG~~vA~~l~~~-Ga~Vi-v~d~dp~r~~~-A~~~G~~-v~~l~e~l~--~aDvVi~atG~~~lI~~e~l  151 (542)
                      .+|+|||+|.+|...+..++.. +++++ ++|+++.++.. +...|.. +.++++++.  ++|+|+.|+.+..-. .-..
T Consensus         5 ~rvgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g~~~~~~~~~~l~~~~~D~V~i~tp~~~h~-~~~~   83 (344)
T 3euw_A            5 LRIALFGAGRIGHVHAANIAANPDLELVVIADPFIEGAQRLAEANGAEAVASPDEVFARDDIDGIVIGSPTSTHV-DLIT   83 (344)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHTTTCEEESSHHHHTTCSCCCEEEECSCGGGHH-HHHH
T ss_pred             eEEEEECCcHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHcCCceeCCHHHHhcCCCCCEEEEeCCchhhH-HHHH
Confidence            4799999999999999998876 67766 78999987654 4445654 457888886  899999998643222 2334


Q ss_pred             hccCCCeEEE
Q psy4626         152 DKMKNGCVVC  161 (542)
Q Consensus       152 ~~mk~Gailv  161 (542)
                      ..++.|.-++
T Consensus        84 ~al~~gk~v~   93 (344)
T 3euw_A           84 RAVERGIPAL   93 (344)
T ss_dssp             HHHHTTCCEE
T ss_pred             HHHHcCCcEE
Confidence            4555565333

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1

Probab=96.39  E-value=0.0098  Score=60.55  Aligned_cols=64  Identities=19%  Similarity=0.279  Sum_probs=48.0

Q ss_pred             EEEEEcCChhHHHHHHHHHhCCC--EEEEEeCCchhhhhhhc---C------Cce--eeCHHHHhcCCcEEEEcCCCc
Q psy4626          79 QVVLCGYGEVGKGCCQSLKGLGC--VIYITEIDPICALQACM---D------GFS--VVKLNEVIRTVDIVVTATGNK  143 (542)
Q Consensus        79 tVvViG~G~IG~~vA~~l~~~Ga--~Viv~d~dp~r~~~A~~---~------G~~--v~~l~e~l~~aDvVi~atG~~  143 (542)
                      +|+|+|+|.+|..+|..+...|.  +|+++|+++.++.....   .      ...  ..+ .+.++++|+||.+.+.+
T Consensus         2 kI~VIGaG~~G~~la~~l~~~g~~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~i~~~d-~~~~~~aDvViiav~~~   78 (319)
T 1a5z_A            2 KIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAGD-YADLKGSDVVIVAAGVP   78 (319)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEECC-GGGGTTCSEEEECCCCC
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHHHHHhhhhhcCCcEEEeCC-HHHhCCCCEEEEccCCC
Confidence            79999999999999999988888  99999999865432111   1      111  223 35678999999998753

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=96.37  E-value=0.0049  Score=62.44  Aligned_cols=66  Identities=20%  Similarity=0.161  Sum_probs=47.2

Q ss_pred             cEEEEEcCChhHHHHHHHHHhCCC--EEEEEeCCchhhhh-hhc--CC------ceee-CHHHHhcCCcEEEEcCCCc
Q psy4626          78 KQVVLCGYGEVGKGCCQSLKGLGC--VIYITEIDPICALQ-ACM--DG------FSVV-KLNEVIRTVDIVVTATGNK  143 (542)
Q Consensus        78 ktVvViG~G~IG~~vA~~l~~~Ga--~Viv~d~dp~r~~~-A~~--~G------~~v~-~l~e~l~~aDvVi~atG~~  143 (542)
                      .+|+|+|.|.+|..+|..+...|.  +|..+|+++.++.. +..  .+      ..+. +..+++++||+||.+.|.+
T Consensus         1 mkI~VIGaG~vG~~la~~la~~g~~~eV~L~D~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~a~~~aDvVIi~~~~~   78 (304)
T 2v6b_A            1 MKVGVVGTGFVGSTAAFALVLRGSCSELVLVDRDEDRAQAEAEDIAHAAPVSHGTRVWHGGHSELADAQVVILTAGAN   78 (304)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHTTSCCTTSCCEEEEECGGGGTTCSEEEECC---
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHhhhhhhhhcCCeEEEECCHHHhCCCCEEEEcCCCC
Confidence            379999999999999999999898  99999999875431 111  11      1111 2235689999999998754

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=96.37  E-value=0.015  Score=56.50  Aligned_cols=38  Identities=21%  Similarity=0.362  Sum_probs=33.9

Q ss_pred             cccCcEEEEEcC-Ch--hHHHHHHHHHhCCCEEEEEeCCch
Q psy4626          74 MFGGKQVVLCGY-GE--VGKGCCQSLKGLGCVIYITEIDPI  111 (542)
Q Consensus        74 ~l~GktVvViG~-G~--IG~~vA~~l~~~Ga~Viv~d~dp~  111 (542)
                      .+.||+++|.|. |.  ||+.+|+.|...|++|+++++++.
T Consensus         4 ~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~~   44 (266)
T 3oig_A            4 SLEGRNIVVMGVANKRSIAWGIARSLHEAGARLIFTYAGER   44 (266)
T ss_dssp             CCTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGG
T ss_pred             ccCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEecCchH
Confidence            468999999998 45  999999999999999999998764

>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*

Probab=96.35  E-value=0.013  Score=60.12  Aligned_cols=90  Identities=19%  Similarity=0.162  Sum_probs=61.0

Q ss_pred             ccCcEEEEEcCChhHHHHHHHHHhCCC--EEEEEeCCchhhh-hhh--cCC------cee-eCHHHHhcCCcEEEEcCCC
Q psy4626          75 FGGKQVVLCGYGEVGKGCCQSLKGLGC--VIYITEIDPICAL-QAC--MDG------FSV-VKLNEVIRTVDIVVTATGN  142 (542)
Q Consensus        75 l~GktVvViG~G~IG~~vA~~l~~~Ga--~Viv~d~dp~r~~-~A~--~~G------~~v-~~l~e~l~~aDvVi~atG~  142 (542)
                      ..+++|+|+|+|.+|..+|..+...|.  ++.++|+++.++. .+.  .+.      ..+ .+..+.+++||+||.+.|.
T Consensus         7 ~~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~i~~~~~~a~~~aDiVvi~ag~   86 (326)
T 3vku_A            7 KDHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLEDALPFTSPKKIYSAEYSDAKDADLVVITAGA   86 (326)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGTTCSEEEECCCC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHhhHhhhhhhcCCcEEEECcHHHhcCCCEEEECCCC
Confidence            357899999999999999999988777  9999999886543 111  111      111 2335678999999998774


Q ss_pred             cc--------cCC---------HHHHhccCCCeEEEecc
Q psy4626         143 KN--------VVT---------REHMDKMKNGCVVCNMG  164 (542)
Q Consensus       143 ~~--------lI~---------~e~l~~mk~GailvnvG  164 (542)
                      +.        ++.         .+.+....|.+++++++
T Consensus        87 ~~kpG~tR~dL~~~N~~I~~~i~~~i~~~~p~a~ilvvt  125 (326)
T 3vku_A           87 PQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAA  125 (326)
T ss_dssp             C----------------CHHHHHHHHHTTTCCSEEEECS
T ss_pred             CCCCCchHHHHHHHHHHHHHHHHHHHHhcCCceEEEEcc
Confidence            32        111         12344445778888876

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=96.34  E-value=0.0072  Score=61.34  Aligned_cols=66  Identities=11%  Similarity=0.100  Sum_probs=49.9

Q ss_pred             CcEEEEEcCChhHHHHHHHHHhCCC-EEEEEeCCchhhhhhh------------cCCcee-eCHHHHhcCCcEEEEcCCC
Q psy4626          77 GKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQAC------------MDGFSV-VKLNEVIRTVDIVVTATGN  142 (542)
Q Consensus        77 GktVvViG~G~IG~~vA~~l~~~Ga-~Viv~d~dp~r~~~A~------------~~G~~v-~~l~e~l~~aDvVi~atG~  142 (542)
                      .++|+|+|+|.+|..+|..+...|. +|+++|+++.++....            ...... .+. ++++++|+||.+.|.
T Consensus         4 ~~kI~VIGaG~~G~~ia~~la~~g~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~-~a~~~aDiVi~avg~   82 (317)
T 2ewd_A            4 RRKIAVIGSGQIGGNIAYIVGKDNLADVVLFDIAEGIPQGKALDITHSMVMFGSTSKVIGTDDY-ADISGSDVVIITASI   82 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGTTCSEEEECCCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCchHHHHHHHHHHhhhhhcCCCcEEEECCCH-HHhCCCCEEEEeCCC
Confidence            4689999999999999999998898 9999999986544210            011222 344 678999999999874


Q ss_pred             c
Q psy4626         143 K  143 (542)
Q Consensus       143 ~  143 (542)
                      +
T Consensus        83 p   83 (317)
T 2ewd_A           83 P   83 (317)
T ss_dssp             S
T ss_pred             C
Confidence            3

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=96.33  E-value=0.0085  Score=61.56  Aligned_cols=90  Identities=18%  Similarity=0.163  Sum_probs=61.8

Q ss_pred             cCcEEEEEcCChhHHHHHHHHHhCCC--EEEEEeCCchhhhh-h--hcCC-------cee-eCHHHHhcCCcEEEEcCCC
Q psy4626          76 GGKQVVLCGYGEVGKGCCQSLKGLGC--VIYITEIDPICALQ-A--CMDG-------FSV-VKLNEVIRTVDIVVTATGN  142 (542)
Q Consensus        76 ~GktVvViG~G~IG~~vA~~l~~~Ga--~Viv~d~dp~r~~~-A--~~~G-------~~v-~~l~e~l~~aDvVi~atG~  142 (542)
                      ...+|+|+|+|.+|..+|..+...|.  +|+.+|+++.++.. +  ..++       ..+ .+..+++++||+||.+.|.
T Consensus         4 ~~~kI~ViGaG~vG~~~a~~l~~~~~~~~l~l~D~~~~k~~g~a~DL~~~~~~~~~~v~i~~~~~~a~~~aDvVvi~ag~   83 (326)
T 3pqe_A            4 HVNKVALIGAGFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHGKAFAPQPVKTSYGTYEDCKDADIVCICAGA   83 (326)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHTGGGSSSCCEEEEECGGGGTTCSEEEECCSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEecchHHHHHHHHHHHhccccccCCeEEEeCcHHHhCCCCEEEEeccc
Confidence            35789999999999999999988886  99999998876431 1  1111       111 2234678999999998875


Q ss_pred             cccC--C---------------HHHHhccCCCeEEEeccC
Q psy4626         143 KNVV--T---------------REHMDKMKNGCVVCNMGH  165 (542)
Q Consensus       143 ~~lI--~---------------~e~l~~mk~GailvnvG~  165 (542)
                      +.--  +               .+.+....+.+++++++-
T Consensus        84 p~kpG~~R~dL~~~N~~Iv~~i~~~I~~~~p~a~vlvvtN  123 (326)
T 3pqe_A           84 NQKPGETRLELVEKNLKIFKGIVSEVMASGFDGIFLVATN  123 (326)
T ss_dssp             CCCTTCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECSS
T ss_pred             CCCCCccHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEcCC
Confidence            3211  1               122334467888888883

>3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A*

Probab=96.32  E-value=0.015  Score=57.39  Aligned_cols=65  Identities=18%  Similarity=0.321  Sum_probs=47.9

Q ss_pred             CcEEEEEcCC-hhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce-------eeCHH---H-------HhcCCcEEEE
Q psy4626          77 GKQVVLCGYG-EVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-------VVKLN---E-------VIRTVDIVVT  138 (542)
Q Consensus        77 GktVvViG~G-~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~-------v~~l~---e-------~l~~aDvVi~  138 (542)
                      .|+|+|.|.+ -||+.+|+.|...|++|+++|+++.+..+....+..       +.+.+   +       .+...|++|.
T Consensus         2 nK~vlVTGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~v~~~~~~~g~iDiLVN   81 (247)
T 3ged_A            2 NRGVIVTGGGHGIGKQICLDFLEAGDKVCFIDIDEKRSADFAKERPNLFYFHGDVADPLTLKKFVEYAMEKLQRIDVLVN   81 (247)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHTTCTTEEEEECCTTSHHHHHHHHHHHHHHHSCCCEEEE
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcCCEEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence            4899999975 699999999999999999999998776554443322       11221   1       1357899999


Q ss_pred             cCC
Q psy4626         139 ATG  141 (542)
Q Consensus       139 atG  141 (542)
                      +.|
T Consensus        82 NAG   84 (247)
T 3ged_A           82 NAC   84 (247)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            765

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=96.32  E-value=0.012  Score=59.37  Aligned_cols=87  Identities=14%  Similarity=0.129  Sum_probs=59.0

Q ss_pred             cEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCcee--------------eCHHHHhcCCcEEEEcCCCc
Q psy4626          78 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV--------------VKLNEVIRTVDIVVTATGNK  143 (542)
Q Consensus        78 ktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v--------------~~l~e~l~~aDvVi~atG~~  143 (542)
                      .+++|+|+|.+|..+|..|...|.+|+++++++.  ......|...              .+..+.+..+|+||.|+-..
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~~--~~i~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~D~vilavk~~   80 (312)
T 3hn2_A            3 LRIAIVGAGALGLYYGALLQRSGEDVHFLLRRDY--EAIAGNGLKVFSINGDFTLPHVKGYRAPEEIGPMDLVLVGLKTF   80 (312)
T ss_dssp             -CEEEECCSTTHHHHHHHHHHTSCCEEEECSTTH--HHHHHTCEEEEETTCCEEESCCCEESCHHHHCCCSEEEECCCGG
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCeEEEEEcCcH--HHHHhCCCEEEcCCCeEEEeeceeecCHHHcCCCCEEEEecCCC
Confidence            4799999999999999999999999999998873  2222334321              11123467899999997554


Q ss_pred             ccCC--HHHHhccCCCeEEEeccCC
Q psy4626         144 NVVT--REHMDKMKNGCVVCNMGHS  166 (542)
Q Consensus       144 ~lI~--~e~l~~mk~GailvnvG~g  166 (542)
                      .+-.  .+.-..++++..++.+.-|
T Consensus        81 ~~~~~l~~l~~~l~~~~~iv~l~nG  105 (312)
T 3hn2_A           81 ANSRYEELIRPLVEEGTQILTLQNG  105 (312)
T ss_dssp             GGGGHHHHHGGGCCTTCEEEECCSS
T ss_pred             CcHHHHHHHHhhcCCCCEEEEecCC
Confidence            3321  1222346778888876655

>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A

Probab=96.32  E-value=0.0059  Score=65.35  Aligned_cols=88  Identities=15%  Similarity=0.094  Sum_probs=59.0

Q ss_pred             cCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhc-CC-ce-----eeC---HHHHhcCCcEEEEcCCCccc
Q psy4626          76 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACM-DG-FS-----VVK---LNEVIRTVDIVVTATGNKNV  145 (542)
Q Consensus        76 ~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~-~G-~~-----v~~---l~e~l~~aDvVi~atG~~~l  145 (542)
                      .+++|+|+|+|.+|+.++..|...|.+|+++++++.++..... .+ ..     +.+   +.+++.++|+||.+++...-
T Consensus         2 ~~k~VlViGaG~iG~~ia~~L~~~G~~V~v~~R~~~~a~~la~~~~~~~~~~~Dv~d~~~l~~~l~~~DvVIn~a~~~~~   81 (450)
T 1ff9_A            2 ATKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEVAKHDLVISLIPYTFH   81 (450)
T ss_dssp             CCCEEEEECCSTTHHHHHHHHHTTTCEEEEEESSHHHHHHTTTTCTTEEEEECCTTCHHHHHHHHTTSSEEEECCC--CH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCcCEEEEEECCHHHHHHHHHhcCCceEEEeecCCHHHHHHHHcCCcEEEECCccccc
Confidence            4789999999999999999999999999999999876543221 22 22     122   33567899999999874211


Q ss_pred             CCHHHHhccCCCeEEEecc
Q psy4626         146 VTREHMDKMKNGCVVCNMG  164 (542)
Q Consensus       146 I~~e~l~~mk~GailvnvG  164 (542)
                       ..-..+.++.|..++..+
T Consensus        82 -~~i~~a~l~~g~~vvd~~   99 (450)
T 1ff9_A           82 -ATVIKSAIRQKKHVVTTS   99 (450)
T ss_dssp             -HHHHHHHHHHTCEEEESS
T ss_pred             -hHHHHHHHhCCCeEEEee
Confidence             001223345566666554

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=96.31  E-value=0.0023  Score=64.28  Aligned_cols=91  Identities=18%  Similarity=0.230  Sum_probs=60.5

Q ss_pred             ccccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchh----hhhhh-----------------------cCC-c-ee
Q psy4626          73 VMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPIC----ALQAC-----------------------MDG-F-SV  123 (542)
Q Consensus        73 ~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r----~~~A~-----------------------~~G-~-~v  123 (542)
                      ..+.|++|+|+|.|.+|...++.|...|++|+|++.+...    .....                       ..| . .+
T Consensus         9 ~~l~~k~VLVVGgG~va~rka~~Ll~~Ga~VtViap~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~   88 (274)
T 1kyq_A            9 HQLKDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPDLHKSIIPKFGKFIQNKDQPDYREDAKRFINPNWDPTKNEIYEY   88 (274)
T ss_dssp             ECCTTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEEECTTHHHHHCGGGC-----------CEEECTTCCTTSCCCSEE
T ss_pred             EEcCCCEEEEECCcHHHHHHHHHHHhCCCEEEEEcCCCCcchhHHHHHHHhccccccccchhhcccccccccccCCeeEE
Confidence            3568999999999999999999999999999999865431    11111                       112 2 32


Q ss_pred             eC--H-HHHhc------CCcEEEEcCCCcccCCHHHHhccCCC---eEEEecc
Q psy4626         124 VK--L-NEVIR------TVDIVVTATGNKNVVTREHMDKMKNG---CVVCNMG  164 (542)
Q Consensus       124 ~~--l-~e~l~------~aDvVi~atG~~~lI~~e~l~~mk~G---ailvnvG  164 (542)
                      ..  + .+.+.      ++|+||.+||.+. ++.......+.-   ++++|+.
T Consensus        89 i~~~~~~~dL~~l~~~~~adlViaat~d~~-~n~~I~~~Ar~~f~~~i~VNvv  140 (274)
T 1kyq_A           89 IRSDFKDEYLDLENENDAWYIIMTCIPDHP-ESARIYHLCKERFGKQQLVNVA  140 (274)
T ss_dssp             ECSSCCGGGGCCSSTTCCEEEEEECCSCHH-HHHHHHHHHHHHHCTTSEEEET
T ss_pred             EcCCCCHHHHhhcccCCCeEEEEEcCCChH-HHHHHHHHHHHhcCCCcEEEEC
Confidence            21  1 23345      8899999988653 344444455555   6777765

>2bma_A Glutamate dehydrogenase (NADP+); malaria, drug design, analysis, oligomer organization, oxidoreductase; 2.7A {Plasmodium falciparum}

Probab=96.30  E-value=0.012  Score=63.11  Aligned_cols=106  Identities=17%  Similarity=0.254  Sum_probs=67.4

Q ss_pred             HHHHHHHHHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCCCEEE-EEeC----------Cchhh---hhhhc----
Q psy4626          57 YMCRESIIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIY-ITEI----------DPICA---LQACM----  118 (542)
Q Consensus        57 ~g~~~s~~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Vi-v~d~----------dp~r~---~~A~~----  118 (542)
                      ||+-..+-+++.. .+..+.|++|+|-|+|++|..+|+.|..+|++|+ +.|.          |+...   .+.+.    
T Consensus       233 ~Gv~~~~~~~l~~-~G~~l~g~~vaVqG~GnVG~~~a~~L~~~GakvVavsD~~G~i~dp~Gid~edl~~l~~~k~~~~g  311 (470)
T 2bma_A          233 YGLVYFVLEVLKS-LNIPVEKQTAVVSGSGNVALYCVQKLLHLNVKVLTLSDSNGYVYEPNGFTHENLEFLIDLKEEKKG  311 (470)
T ss_dssp             HHHHHHHHHHHHT-TTCCGGGCEEEEECSSHHHHHHHHHHHHTTCEECEEEETTEEEECSSCCCHHHHHHHHHHHTTTTC
T ss_pred             HHHHHHHHHHHHh-ccCCcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEEeCCceEECCCCCCHHHHHHHHHHHHhcCC
Confidence            3443333333333 3567899999999999999999999999999988 6773          22211   11000    


Q ss_pred             ---------CCceeeCHHHHh-cCCcEEEEcCCCcccCCHHHHhcc-CCCeEEEecc
Q psy4626         119 ---------DGFSVVKLNEVI-RTVDIVVTATGNKNVVTREHMDKM-KNGCVVCNMG  164 (542)
Q Consensus       119 ---------~G~~v~~l~e~l-~~aDvVi~atG~~~lI~~e~l~~m-k~GailvnvG  164 (542)
                               .+...++.++.+ ..|||++-|. ..+.|+.+....+ +.++.+|--|
T Consensus       312 ~v~~~~~~~~~a~~v~~~~~~~~~~DI~iPcA-~~~~I~~~na~~l~~~~ak~V~Eg  367 (470)
T 2bma_A          312 RIKEYLNHSSTAKYFPNEKPWGVPCTLAFPCA-TQNDVDLDQAKLLQKNGCILVGEG  367 (470)
T ss_dssp             CGGGGGGTCSSCEECSSCCTTSSCCSEEEECS-STTCBCSHHHHHHHHTTCCEEECC
T ss_pred             cHHHHHhhcCCcEEecCcCeeecCccEEEecc-ccCcCCHHHHHHHHhcCcEEEEeC
Confidence                     023333333444 4799999987 5568886666665 4556555433

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=96.30  E-value=0.0068  Score=61.60  Aligned_cols=90  Identities=17%  Similarity=0.137  Sum_probs=61.6

Q ss_pred             cccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhc----CCc---eee--CHHHH-hcCCcEEEEcCCCc
Q psy4626          74 MFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACM----DGF---SVV--KLNEV-IRTVDIVVTATGNK  143 (542)
Q Consensus        74 ~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~----~G~---~v~--~l~e~-l~~aDvVi~atG~~  143 (542)
                      ..+|++|+.+|+|+.|......++..|++|+.+|++|.....|..    .|.   ++.  +..+. -...|+|+.+...+
T Consensus       120 l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~l~d~~FDvV~~~a~~~  199 (298)
T 3fpf_A          120 FRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETVIDGLEFDVLMVAALAE  199 (298)
T ss_dssp             CCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGGGGGCCCSEEEECTTCS
T ss_pred             CCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhhCCCCCcCEEEECCCcc
Confidence            357999999999998766555566679999999999987665543    232   221  12221 25689999865432


Q ss_pred             ---ccCCHHHHhccCCCeEEEecc
Q psy4626         144 ---NVVTREHMDKMKNGCVVCNMG  164 (542)
Q Consensus       144 ---~lI~~e~l~~mk~GailvnvG  164 (542)
                         .++ ++..+.|||||+++...
T Consensus       200 d~~~~l-~el~r~LkPGG~Lvv~~  222 (298)
T 3fpf_A          200 PKRRVF-RNIHRYVDTETRIIYRT  222 (298)
T ss_dssp             CHHHHH-HHHHHHCCTTCEEEEEE
T ss_pred             CHHHHH-HHHHHHcCCCcEEEEEc
Confidence               233 46778899999988543

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=96.29  E-value=0.0055  Score=78.16  Aligned_cols=102  Identities=16%  Similarity=0.181  Sum_probs=74.3

Q ss_pred             HHHHHHHhhcCccccCcEEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhc----CCce-eeC-----HHH-H
Q psy4626          62 SIIDSLKRSTDVMFGGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACM----DGFS-VVK-----LNE-V  129 (542)
Q Consensus        62 s~~~ai~r~~~~~l~GktVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~----~G~~-v~~-----l~e-~  129 (542)
                      ..++++.+.. ...+|++|+|.|. |.||..+++.++.+|++|++++.++.+...+..    .|.. +.+     ..+ +
T Consensus      1654 TA~~al~~~a-~l~~Ge~VLI~gaaGgVG~aAiqlAk~~Ga~Viat~~s~~k~~~l~~~~~~lga~~v~~~~~~~~~~~i 1732 (2512)
T 2vz8_A         1654 TAYYSLVVRG-RMQPGESVLIHSGSGGVGQAAIAIALSRGCRVFTTVGSAEKRAYLQARFPQLDETCFANSRDTSFEQHV 1732 (2512)
T ss_dssp             HHHHHHTTTT-CCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCTTCCSTTEEESSSSHHHHHH
T ss_pred             HHHHHHHHHh-cCCCCCEEEEEeCChHHHHHHHHHHHHcCCEEEEEeCChhhhHHHHhhcCCCCceEEecCCCHHHHHHH
Confidence            3455554332 3458999999985 999999999999999999999988877665543    3443 221     222 2


Q ss_pred             h-----cCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCC
Q psy4626         130 I-----RTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHS  166 (542)
Q Consensus       130 l-----~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g  166 (542)
                      .     +++|+|+++.|. ..+ .+.++.++++|.++.+|..
T Consensus      1733 ~~~t~g~GvDvVld~~g~-~~l-~~~l~~L~~~Gr~V~iG~~ 1772 (2512)
T 2vz8_A         1733 LRHTAGKGVDLVLNSLAE-EKL-QASVRCLAQHGRFLEIGKF 1772 (2512)
T ss_dssp             HHTTTSCCEEEEEECCCH-HHH-HHHHTTEEEEEEEEECCCH
T ss_pred             HHhcCCCCceEEEECCCc-hHH-HHHHHhcCCCcEEEEeecc
Confidence            1     368999999873 445 4789999999999999854

>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*

Probab=96.24  E-value=0.0096  Score=61.80  Aligned_cols=68  Identities=18%  Similarity=0.250  Sum_probs=47.4

Q ss_pred             ccccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceee---C---HHHHhcCCcEEEEcC
Q psy4626          73 VMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVV---K---LNEVIRTVDIVVTAT  140 (542)
Q Consensus        73 ~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~---~---l~e~l~~aDvVi~at  140 (542)
                      ..+.|++|+|+|.|.+|+.+++.++.+|.+|+++|.++........+.+...   +   +.++++.+|+|+...
T Consensus        10 ~~~~~k~IlIlG~G~~g~~la~aa~~~G~~vi~~d~~~~~~~~~~ad~~~~~~~~d~~~l~~~~~~~dvI~~~~   83 (389)
T 3q2o_A           10 IILPGKTIGIIGGGQLGRMMALAAKEMGYKIAVLDPTKNSPCAQVADIEIVASYDDLKAIQHLAEISDVVTYEF   83 (389)
T ss_dssp             CCCTTSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSTTCTTTTTCSEEEECCTTCHHHHHHHHHTCSEEEESC
T ss_pred             cCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCCchHHhCCceEecCcCCHHHHHHHHHhCCEeeecc
Confidence            3568999999999999999999999999999999977642211111111111   2   335567889875443

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*

Probab=96.23  E-value=0.015  Score=58.92  Aligned_cols=86  Identities=14%  Similarity=0.057  Sum_probs=60.5

Q ss_pred             EEEEEcCChhHHHHHHHHHhCCC--EEEEEeCCchhhh-hhh-----c--C--Ccee--eCHHHHhcCCcEEEEcCCCcc
Q psy4626          79 QVVLCGYGEVGKGCCQSLKGLGC--VIYITEIDPICAL-QAC-----M--D--GFSV--VKLNEVIRTVDIVVTATGNKN  144 (542)
Q Consensus        79 tVvViG~G~IG~~vA~~l~~~Ga--~Viv~d~dp~r~~-~A~-----~--~--G~~v--~~l~e~l~~aDvVi~atG~~~  144 (542)
                      +|+|+|+|.+|..+|..+...|.  +|..+|+++.++. .+.     .  .  ...+  .+-.+++++||+||.+.|.+.
T Consensus         2 kI~ViGaG~vG~~la~~l~~~~~~~~v~L~D~~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d~~a~~~aDiVViaag~~~   81 (294)
T 1oju_A            2 KLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGADYSLLKGSEIIVVTAGLAR   81 (294)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESCGGGGTTCSEEEECCCCCC
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCeEEEEECChHHHHHHHHHHHhhhhhcCCCCEEEEeCCHHHhCCCCEEEECCCCCC
Confidence            79999999999999999988887  9999999997643 111     0  1  1122  222678899999999887542


Q ss_pred             cC--C---------------HHHHhccCCCeEEEecc
Q psy4626         145 VV--T---------------REHMDKMKNGCVVCNMG  164 (542)
Q Consensus       145 lI--~---------------~e~l~~mk~GailvnvG  164 (542)
                      --  +               .+.+....|.+++++++
T Consensus        82 kpG~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvs  118 (294)
T 1oju_A           82 KPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVT  118 (294)
T ss_dssp             CSSCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECS
T ss_pred             CCCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeC
Confidence            11  1               12344556888988888

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=96.23  E-value=0.013  Score=59.08  Aligned_cols=67  Identities=22%  Similarity=0.298  Sum_probs=49.2

Q ss_pred             CcEEEEEcCChhHHHHHHHHHhCCC--EEEEEeCCchhhh-hhh--cCCc------ee--eCHHHHhcCCcEEEEcCCCc
Q psy4626          77 GKQVVLCGYGEVGKGCCQSLKGLGC--VIYITEIDPICAL-QAC--MDGF------SV--VKLNEVIRTVDIVVTATGNK  143 (542)
Q Consensus        77 GktVvViG~G~IG~~vA~~l~~~Ga--~Viv~d~dp~r~~-~A~--~~G~------~v--~~l~e~l~~aDvVi~atG~~  143 (542)
                      -.+|+|+|+|.+|..++..|...|.  +|+++|+++.+.. .+.  ..+.      .+  .+..+.++++|+||.+++.+
T Consensus         7 ~mkI~IiGaG~vG~~~a~~l~~~g~~~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~aD~Vii~v~~~   86 (319)
T 1lld_A            7 PTKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDDPEICRDADMVVITAGPR   86 (319)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEESCGGGGTTCSEEEECCCCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHhhhhhcCCeEEEeCCCHHHhCCCCEEEECCCCC
Confidence            3589999999999999999998898  9999999885543 111  1121      11  11235678999999998754

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=96.21  E-value=0.0074  Score=64.58  Aligned_cols=66  Identities=20%  Similarity=0.256  Sum_probs=51.3

Q ss_pred             cEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhh-------------------hcCC-ce-eeCHHHHhcCCcEE
Q psy4626          78 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQA-------------------CMDG-FS-VVKLNEVIRTVDIV  136 (542)
Q Consensus        78 ktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A-------------------~~~G-~~-v~~l~e~l~~aDvV  136 (542)
                      +++.|+|.|-+|+.+|..+...|.+|+.+|+|+.|...-                   ...| .. ..+.++++..+|++
T Consensus        22 ~~IaViGlGYVGLp~A~~~A~~G~~V~g~Did~~kV~~ln~G~~pi~Epgl~ell~~~~~~g~l~~tt~~~~ai~~ad~~  101 (444)
T 3vtf_A           22 ASLSVLGLGYVGVVHAVGFALLGHRVVGYDVNPSIVERLRAGRPHIYEPGLEEALGRALSSGRLSFAESAEEAVAATDAT  101 (444)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEECSSHHHHHHTSSEE
T ss_pred             CEEEEEccCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHCCCCCCCCCCHHHHHHHHHHcCCeeEEcCHHHHHhcCCce
Confidence            589999999999999999999999999999999764321                   1111 11 23456778899999


Q ss_pred             EEcCCCc
Q psy4626         137 VTATGNK  143 (542)
Q Consensus       137 i~atG~~  143 (542)
                      |.|.+|+
T Consensus       102 ~I~VpTP  108 (444)
T 3vtf_A          102 FIAVGTP  108 (444)
T ss_dssp             EECCCCC
T ss_pred             EEEecCC
Confidence            9998765

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=96.19  E-value=0.019  Score=58.82  Aligned_cols=67  Identities=13%  Similarity=0.137  Sum_probs=49.8

Q ss_pred             cCcEEEEEcCChhHHHHHHHHHhCCC-EEEEEeCCchhhh-hh------h-c--CCcee--eCHHHHhcCCcEEEEcCCC
Q psy4626          76 GGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICAL-QA------C-M--DGFSV--VKLNEVIRTVDIVVTATGN  142 (542)
Q Consensus        76 ~GktVvViG~G~IG~~vA~~l~~~Ga-~Viv~d~dp~r~~-~A------~-~--~G~~v--~~l~e~l~~aDvVi~atG~  142 (542)
                      ...+|+|+|+|.+|..+|..+...|. +|..+|+++.++. .+      . .  ....+  .+-.+++++||+||.+.|.
T Consensus         6 ~~~kI~viGaG~vG~~~a~~l~~~~~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~t~d~~a~~~aDiVIiaag~   85 (324)
T 3gvi_A            6 ARNKIALIGSGMIGGTLAHLAGLKELGDVVLFDIAEGTPQGKGLDIAESSPVDGFDAKFTGANDYAAIEGADVVIVTAGV   85 (324)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEESSGGGGTTCSEEEECCSC
T ss_pred             cCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCchhHHHHHHHHhchhhhcCCCCEEEEeCCHHHHCCCCEEEEccCc
Confidence            45689999999999999999988887 9999999987642 11      0 0  11122  2223788999999999874

>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2}

Probab=96.18  E-value=0.0057  Score=62.68  Aligned_cols=83  Identities=8%  Similarity=0.013  Sum_probs=59.5

Q ss_pred             cEEEEEcCChhHHHHHHHHHhC-CCEEE-EEeCCchhhhh-hhcCCce-eeCHHHHh--cCCcEEEEcCCCcccCCHHHH
Q psy4626          78 KQVVLCGYGEVGKGCCQSLKGL-GCVIY-ITEIDPICALQ-ACMDGFS-VVKLNEVI--RTVDIVVTATGNKNVVTREHM  151 (542)
Q Consensus        78 ktVvViG~G~IG~~vA~~l~~~-Ga~Vi-v~d~dp~r~~~-A~~~G~~-v~~l~e~l--~~aDvVi~atG~~~lI~~e~l  151 (542)
                      .+|+|||+|.+|...+..++.. |++++ ++|+++.++.. +...|.. +.++++++  .++|+|+.|+.+..-. ....
T Consensus         6 ~~vgiiG~G~~g~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~D~V~i~tp~~~h~-~~~~   84 (354)
T 3db2_A            6 VGVAAIGLGRWAYVMADAYTKSEKLKLVTCYSRTEDKREKFGKRYNCAGDATMEALLAREDVEMVIITVPNDKHA-EVIE   84 (354)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTCSSEEEEEEECSSHHHHHHHHHHHTCCCCSSHHHHHHCSSCCEEEECSCTTSHH-HHHH
T ss_pred             ceEEEEccCHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHcCCCCcCCHHHHhcCCCCCEEEEeCChHHHH-HHHH
Confidence            4899999999999999999887 78855 78999987654 3334554 45788888  6799999998653222 2345


Q ss_pred             hccCCCeEEE
Q psy4626         152 DKMKNGCVVC  161 (542)
Q Consensus       152 ~~mk~Gailv  161 (542)
                      ..++.|.-++
T Consensus        85 ~al~~gk~vl   94 (354)
T 3db2_A           85 QCARSGKHIY   94 (354)
T ss_dssp             HHHHTTCEEE
T ss_pred             HHHHcCCEEE
Confidence            5566665444

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=96.17  E-value=0.021  Score=58.40  Aligned_cols=68  Identities=18%  Similarity=0.230  Sum_probs=50.1

Q ss_pred             cCcEEEEEcCChhHHHHHHHHHhCCC-EEEEEeCCchhhh-hhh--cC-------Ccee--eCHHHHhcCCcEEEEcCCC
Q psy4626          76 GGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICAL-QAC--MD-------GFSV--VKLNEVIRTVDIVVTATGN  142 (542)
Q Consensus        76 ~GktVvViG~G~IG~~vA~~l~~~Ga-~Viv~d~dp~r~~-~A~--~~-------G~~v--~~l~e~l~~aDvVi~atG~  142 (542)
                      ...+|+|+|+|.+|..+|..+...|. +|..+|+++.++. .+.  .+       ...+  .+..+++++||+||.+.|.
T Consensus         4 ~~~kI~iiGaG~vG~~~a~~l~~~~~~~v~l~Di~~~~~~g~a~dL~~~~~~~~~~~~v~~t~d~~a~~~aDvVIi~ag~   83 (321)
T 3p7m_A            4 ARKKITLVGAGNIGGTLAHLALIKQLGDVVLFDIAQGMPNGKALDLLQTCPIEGVDFKVRGTNDYKDLENSDVVIVTAGV   83 (321)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCGGGGTTCSEEEECCSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCChHHHHHHHHHHHhhhhhcCCCcEEEEcCCHHHHCCCCEEEEcCCc
Confidence            35689999999999999999988777 9999999987642 111  11       1122  2334688999999998874


Q ss_pred             c
Q psy4626         143 K  143 (542)
Q Consensus       143 ~  143 (542)
                      +
T Consensus        84 p   84 (321)
T 3p7m_A           84 P   84 (321)
T ss_dssp             C
T ss_pred             C
Confidence            3

>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A

Probab=96.17  E-value=0.0081  Score=57.18  Aligned_cols=68  Identities=15%  Similarity=0.206  Sum_probs=49.9

Q ss_pred             ccCcEEEEEcC-ChhHHHHHHHHHhCCC--EEEEEeCCchhhhhhhcCCcee--eC------HHHHhcCCcEEEEcCCC
Q psy4626          75 FGGKQVVLCGY-GEVGKGCCQSLKGLGC--VIYITEIDPICALQACMDGFSV--VK------LNEVIRTVDIVVTATGN  142 (542)
Q Consensus        75 l~GktVvViG~-G~IG~~vA~~l~~~Ga--~Viv~d~dp~r~~~A~~~G~~v--~~------l~e~l~~aDvVi~atG~  142 (542)
                      +.+++++|+|. |.||+.+++.|...|.  +|+++++++.+.......+..+  .+      ++++++++|+||.+.|.
T Consensus        16 m~~~~vlVtGasg~iG~~l~~~L~~~G~~~~V~~~~r~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi~~ag~   94 (242)
T 2bka_A           16 MQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYKNVNQEVVDFEKLDDYASAFQGHDVGFCCLGT   94 (242)
T ss_dssp             HTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGGGGGCEEEECCGGGGGGGGGGGSSCSEEEECCCC
T ss_pred             hcCCeEEEECCCcHHHHHHHHHHHcCCCCCEEEEEEcCCCCccccccCCceEEecCcCCHHHHHHHhcCCCEEEECCCc
Confidence            46899999995 9999999999999999  9999998876433211112221  12      23456789999998874

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=96.16  E-value=0.014  Score=58.22  Aligned_cols=39  Identities=18%  Similarity=0.349  Sum_probs=35.2

Q ss_pred             ccccCcEEEEEcCC---hhHHHHHHHHHhCCCEEEEEeCCch
Q psy4626          73 VMFGGKQVVLCGYG---EVGKGCCQSLKGLGCVIYITEIDPI  111 (542)
Q Consensus        73 ~~l~GktVvViG~G---~IG~~vA~~l~~~Ga~Viv~d~dp~  111 (542)
                      ..+.||+++|.|.+   -||+.+|+.|...|++|+++++++.
T Consensus        26 ~~l~~k~vlVTGasg~~GIG~~ia~~la~~G~~V~~~~r~~~   67 (296)
T 3k31_A           26 MLMEGKKGVIIGVANDKSLAWGIAKAVCAQGAEVALTYLSET   67 (296)
T ss_dssp             CTTTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGG
T ss_pred             hccCCCEEEEEeCCCCCCHHHHHHHHHHHCCCEEEEEeCChH
Confidence            35789999999986   8999999999999999999998864

>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A*

Probab=96.16  E-value=0.0068  Score=62.14  Aligned_cols=83  Identities=18%  Similarity=0.266  Sum_probs=59.5

Q ss_pred             cEEEEEcCChhHHHHHHHHHhC--CCEEE-EEeCCchhhhh-hhcCCce-eeCHHHHhc--CCcEEEEcCCCcccCCHHH
Q psy4626          78 KQVVLCGYGEVGKGCCQSLKGL--GCVIY-ITEIDPICALQ-ACMDGFS-VVKLNEVIR--TVDIVVTATGNKNVVTREH  150 (542)
Q Consensus        78 ktVvViG~G~IG~~vA~~l~~~--Ga~Vi-v~d~dp~r~~~-A~~~G~~-v~~l~e~l~--~aDvVi~atG~~~lI~~e~  150 (542)
                      .+|+|||+|.+|...+..++..  +++++ ++|+++.++.. +...|.. +.++++++.  ++|+|+.|+.+..-. ...
T Consensus        14 ~rvgiiG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~-~~~   92 (354)
T 3q2i_A           14 IRFALVGCGRIANNHFGALEKHADRAELIDVCDIDPAALKAAVERTGARGHASLTDMLAQTDADIVILTTPSGLHP-TQS   92 (354)
T ss_dssp             EEEEEECCSTTHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHHCCEEESCHHHHHHHCCCSEEEECSCGGGHH-HHH
T ss_pred             ceEEEEcCcHHHHHHHHHHHhCCCCeEEEEEEcCCHHHHHHHHHHcCCceeCCHHHHhcCCCCCEEEECCCcHHHH-HHH
Confidence            4899999999999999999877  77755 78999987654 3344654 457888885  899999998653222 234


Q ss_pred             HhccCCCeEEE
Q psy4626         151 MDKMKNGCVVC  161 (542)
Q Consensus       151 l~~mk~Gailv  161 (542)
                      ...++.|.-++
T Consensus        93 ~~al~~gk~v~  103 (354)
T 3q2i_A           93 IECSEAGFHVM  103 (354)
T ss_dssp             HHHHHTTCEEE
T ss_pred             HHHHHCCCCEE
Confidence            45566665554

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=96.15  E-value=0.0083  Score=60.58  Aligned_cols=85  Identities=14%  Similarity=0.189  Sum_probs=58.5

Q ss_pred             cEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeC----------H-HHHhcCCcEEEEcCCCcccC
Q psy4626          78 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVK----------L-NEVIRTVDIVVTATGNKNVV  146 (542)
Q Consensus        78 ktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~----------l-~e~l~~aDvVi~atG~~~lI  146 (542)
                      .+++|+|+|.+|..++..|. .|.+|+++++++.+.......|.....          . .+....+|+||.|+-...+ 
T Consensus         3 mkI~IiGaGa~G~~~a~~L~-~g~~V~~~~r~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~D~vilavK~~~~-   80 (307)
T 3ego_A            3 LKIGIIGGGSVGLLCAYYLS-LYHDVTVVTRRQEQAAAIQSEGIRLYKGGEEFRADCSADTSINSDFDLLVVTVKQHQL-   80 (307)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-TTSEEEEECSCHHHHHHHHHHCEEEEETTEEEEECCEEESSCCSCCSEEEECCCGGGH-
T ss_pred             CEEEEECCCHHHHHHHHHHh-cCCceEEEECCHHHHHHHHhCCceEecCCCeecccccccccccCCCCEEEEEeCHHHH-
Confidence            58999999999999999999 899999999988665443344544321          1 2345789999999754332 


Q ss_pred             CHHHHhcc---CCCeEEEeccCC
Q psy4626         147 TREHMDKM---KNGCVVCNMGHS  166 (542)
Q Consensus       147 ~~e~l~~m---k~GailvnvG~g  166 (542)
                       .+.++.+   .++. ++.+.-|
T Consensus        81 -~~~l~~l~~~~~~~-ivs~~nG  101 (307)
T 3ego_A           81 -QSVFSSLERIGKTN-ILFLQNG  101 (307)
T ss_dssp             -HHHHHHTTSSCCCE-EEECCSS
T ss_pred             -HHHHHHhhcCCCCe-EEEecCC
Confidence             3445544   3455 6655544

>2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens}

Probab=96.13  E-value=0.0088  Score=60.41  Aligned_cols=82  Identities=17%  Similarity=0.242  Sum_probs=57.3

Q ss_pred             EEEEEcCChhHHHH-HHHHHhCCCEEE-EEeCCchhhhh-hhcCCce--eeCHHHHhc--CCcEEEEcCCCcccCCHHHH
Q psy4626          79 QVVLCGYGEVGKGC-CQSLKGLGCVIY-ITEIDPICALQ-ACMDGFS--VVKLNEVIR--TVDIVVTATGNKNVVTREHM  151 (542)
Q Consensus        79 tVvViG~G~IG~~v-A~~l~~~Ga~Vi-v~d~dp~r~~~-A~~~G~~--v~~l~e~l~--~aDvVi~atG~~~lI~~e~l  151 (542)
                      +|+|||+|.+|+.. +..++..|.+++ ++|+++.++.. +...|..  +.+.++++.  ++|+|+.++.+..-. ....
T Consensus         2 ~vgiiG~G~~g~~~~~~~l~~~~~~~vav~d~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~D~V~i~tp~~~h~-~~~~   80 (332)
T 2glx_A            2 RWGLIGASTIAREWVIGAIRATGGEVVSMMSTSAERGAAYATENGIGKSVTSVEELVGDPDVDAVYVSTTNELHR-EQTL   80 (332)
T ss_dssp             EEEEESCCHHHHHTHHHHHHHTTCEEEEEECSCHHHHHHHHHHTTCSCCBSCHHHHHTCTTCCEEEECSCGGGHH-HHHH
T ss_pred             eEEEEcccHHHHHhhhHHhhcCCCeEEEEECCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEeCChhHhH-HHHH
Confidence            69999999999987 767766788765 78999987653 3444553  456788875  599999998643222 2344


Q ss_pred             hccCCCeEEE
Q psy4626         152 DKMKNGCVVC  161 (542)
Q Consensus       152 ~~mk~Gailv  161 (542)
                      ..++.|.-++
T Consensus        81 ~al~~Gk~v~   90 (332)
T 2glx_A           81 AAIRAGKHVL   90 (332)
T ss_dssp             HHHHTTCEEE
T ss_pred             HHHHCCCeEE
Confidence            5667776443

>3r3j_A Glutamate dehydrogenase; rossman fold, oxidoreductase, apicoplast; 3.10A {Plasmodium falciparum}

Probab=96.13  E-value=0.023  Score=60.73  Aligned_cols=104  Identities=14%  Similarity=0.160  Sum_probs=67.9

Q ss_pred             HHHHHHHHHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCCCEEE-EEeCC----------chhhhh-----hh---
Q psy4626          57 YMCRESIIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIY-ITEID----------PICALQ-----AC---  117 (542)
Q Consensus        57 ~g~~~s~~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Vi-v~d~d----------p~r~~~-----A~---  117 (542)
                      ||+-..+-+++.. .+..+.|++|+|-|+|++|..+|+.|...|++|+ +.|.+          +..+..     ..   
T Consensus       220 ~Gv~~~~~~~~~~-~g~~l~g~~VaVQG~GnVG~~aa~~L~e~GakvVavsD~~G~iyd~~Gld~~~l~~~~~~k~~~~~  298 (456)
T 3r3j_A          220 YGVVYFAENVLKD-LNDNLENKKCLVSGSGNVAQYLVEKLIEKGAIVLTMSDSNGYILEPNGFTKEQLNYIMDIKNNQRL  298 (456)
T ss_dssp             HHHHHHHHHHHHT-TTCCSTTCCEEEECCSHHHHHHHHHHHHHTCCBCCEECSSCEEECTTCCCHHHHHHHHHHHHTSCC
T ss_pred             hHHHHHHHHHHHH-cCCCccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCcEECCCCCCHHHHHHHHHHHHhcCc
Confidence            3444433333333 3567899999999999999999999999999986 77743          222110     00   


Q ss_pred             --------cCCceeeCHHHHh-cCCcEEEEcCCCcccCCHHHHhcc-CCCeEEEe
Q psy4626         118 --------MDGFSVVKLNEVI-RTVDIVVTATGNKNVVTREHMDKM-KNGCVVCN  162 (542)
Q Consensus       118 --------~~G~~v~~l~e~l-~~aDvVi~atG~~~lI~~e~l~~m-k~Gailvn  162 (542)
                              ..+...++.++.+ ..|||++-|.. .+.|+.+....+ +.++.+|-
T Consensus       299 ~v~~~~~~~~~a~~v~~~~i~~~~~DI~iPcA~-~~~I~~~na~~l~~~~ak~V~  352 (456)
T 3r3j_A          299 RLKEYLKYSKTAKYFENQKPWNIPCDIAFPCAT-QNEINENDADLFIQNKCKMIV  352 (456)
T ss_dssp             CGGGGGGTCSSCEEECSCCGGGSCCSEEEECSC-TTCBCHHHHHHHHHHTCCEEE
T ss_pred             chhhhhhcCCCceEeCCccccccCccEEEeCCC-ccchhhHHHHHHHhcCCeEEE
Confidence                    0234445545554 57999999864 468988777776 23454443

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*

Probab=96.13  E-value=0.011  Score=67.22  Aligned_cols=88  Identities=25%  Similarity=0.328  Sum_probs=59.9

Q ss_pred             cEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhc---------------CCc-------eeeCHHHHhcCCcE
Q psy4626          78 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACM---------------DGF-------SVVKLNEVIRTVDI  135 (542)
Q Consensus        78 ktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~---------------~G~-------~v~~l~e~l~~aDv  135 (542)
                      ++|+|+|+|.+|.++|..+...|.+|+++|+++..+..+..               .+.       ...+..+.+.+||+
T Consensus       317 ~~v~ViGaG~MG~gIA~~~a~aG~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aDl  396 (742)
T 3zwc_A          317 SSVGVLGLGTMGRGIAISFARVGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSSSTKELSTVDL  396 (742)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCEEEESCGGGGGSCSE
T ss_pred             cEEEEEcccHHHHHHHHHHHhCCCchhcccchHhhhhhHHHHHHHHHHHHHHhccccchhhhhhhhcccCcHHHHhhCCE
Confidence            69999999999999999999999999999999865432211               000       11122345789999


Q ss_pred             EEEcCCCcccCCHH----HHhccCCCeEEE-eccC
Q psy4626         136 VVTATGNKNVVTRE----HMDKMKNGCVVC-NMGH  165 (542)
Q Consensus       136 Vi~atG~~~lI~~e----~l~~mk~Gailv-nvG~  165 (542)
                      ||++.--.--+..+    .=+.+++++++. |++.
T Consensus       397 VIEAV~E~l~iK~~vf~~le~~~~~~aIlASNTSs  431 (742)
T 3zwc_A          397 VVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTSA  431 (742)
T ss_dssp             EEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSS
T ss_pred             EEEeccccHHHHHHHHHHHhhcCCCCceEEecCCc
Confidence            99986321112222    233569999998 5553

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=96.09  E-value=0.011  Score=62.92  Aligned_cols=69  Identities=22%  Similarity=0.379  Sum_probs=51.2

Q ss_pred             cccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchh----hhhhhcCCceee---CHHHHhcC-CcEEEEcCCC
Q psy4626          74 MFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPIC----ALQACMDGFSVV---KLNEVIRT-VDIVVTATGN  142 (542)
Q Consensus        74 ~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r----~~~A~~~G~~v~---~l~e~l~~-aDvVi~atG~  142 (542)
                      .+.|++|.|+|.|..|..+|+.|+..|.+|+++|.++..    ...-...|..+.   ..++.+.+ +|+||.++|-
T Consensus         6 ~~~~k~v~viG~G~sG~s~A~~l~~~G~~V~~~D~~~~~~~~~~~~L~~~gi~~~~g~~~~~~~~~~~d~vv~spgi   82 (451)
T 3lk7_A            6 TFENKKVLVLGLARSGEAAARLLAKLGAIVTVNDGKPFDENPTAQSLLEEGIKVVCGSHPLELLDEDFCYMIKNPGI   82 (451)
T ss_dssp             TTTTCEEEEECCTTTHHHHHHHHHHTTCEEEEEESSCGGGCHHHHHHHHTTCEEEESCCCGGGGGSCEEEEEECTTS
T ss_pred             hcCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEeCCcccCChHHHHHHhCCCEEEECCChHHhhcCCCCEEEECCcC
Confidence            357999999999999999999999999999999986531    112234566543   12344565 8999988774

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=96.06  E-value=0.0091  Score=58.35  Aligned_cols=66  Identities=17%  Similarity=0.097  Sum_probs=50.0

Q ss_pred             CcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceee--CHHHH-hcCCcEEEEcCCC
Q psy4626          77 GKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVV--KLNEV-IRTVDIVVTATGN  142 (542)
Q Consensus        77 GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~--~l~e~-l~~aDvVi~atG~  142 (542)
                      .++|+|+|+|.||+.+++.|...|.+|+++++++.+.......+++++  ++.+. +.++|+||.+.+.
T Consensus         5 ~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~d~~~~~~d~vi~~a~~   73 (286)
T 3ius_A            5 TGTLLSFGHGYTARVLSRALAPQGWRIIGTSRNPDQMEAIRASGAEPLLWPGEEPSLDGVTHLLISTAP   73 (286)
T ss_dssp             CCEEEEETCCHHHHHHHHHHGGGTCEEEEEESCGGGHHHHHHTTEEEEESSSSCCCCTTCCEEEECCCC
T ss_pred             cCcEEEECCcHHHHHHHHHHHHCCCEEEEEEcChhhhhhHhhCCCeEEEecccccccCCCCEEEECCCc
Confidence            368999999999999999999999999999998876544333454432  21111 6789999998764

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=96.05  E-value=0.027  Score=56.02  Aligned_cols=39  Identities=23%  Similarity=0.348  Sum_probs=35.1

Q ss_pred             cccCcEEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCchh
Q psy4626          74 MFGGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPIC  112 (542)
Q Consensus        74 ~l~GktVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp~r  112 (542)
                      .+.||+++|.|. |-||+.+|+.|...|++|+++++++..
T Consensus        44 ~l~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~   83 (291)
T 3ijr_A           44 KLKGKNVLITGGDSGIGRAVSIAFAKEGANIAIAYLDEEG   83 (291)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchH
Confidence            468999999998 679999999999999999999988754

>2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ...

Probab=96.05  E-value=0.0092  Score=58.47  Aligned_cols=38  Identities=16%  Similarity=0.357  Sum_probs=34.7

Q ss_pred             ccCcEEEEEcC---ChhHHHHHHHHHhCCCEEEEEeCCchh
Q psy4626          75 FGGKQVVLCGY---GEVGKGCCQSLKGLGCVIYITEIDPIC  112 (542)
Q Consensus        75 l~GktVvViG~---G~IG~~vA~~l~~~Ga~Viv~d~dp~r  112 (542)
                      +.||+++|.|.   |-||+.+|+.|...|++|+++++++.+
T Consensus         5 l~~k~vlVTGa~~s~gIG~aia~~l~~~G~~V~~~~r~~~~   45 (269)
T 2h7i_A            5 LDGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRLR   45 (269)
T ss_dssp             TTTCEEEECCCSSTTSHHHHHHHHHHHTTCEEEEEECSCHH
T ss_pred             cCCCEEEEECCCCCCchHHHHHHHHHHCCCEEEEEecChHH
Confidence            67999999994   899999999999999999999988755

>4h15_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, nysgrc; HET: MSE; 1.45A {Sinorhizobium meliloti} PDB: 4h16_A*

Probab=96.04  E-value=0.014  Score=57.86  Aligned_cols=68  Identities=16%  Similarity=0.206  Sum_probs=47.4

Q ss_pred             cccCcEEEEEcCC-hhHHHHHHHHHhCCCEEEEEeCCchhhh-hhhcCCceeeCHH----------HHhcCCcEEEEcCC
Q psy4626          74 MFGGKQVVLCGYG-EVGKGCCQSLKGLGCVIYITEIDPICAL-QACMDGFSVVKLN----------EVIRTVDIVVTATG  141 (542)
Q Consensus        74 ~l~GktVvViG~G-~IG~~vA~~l~~~Ga~Viv~d~dp~r~~-~A~~~G~~v~~l~----------e~l~~aDvVi~atG  141 (542)
                      .+.||+++|.|.+ -||+.+|+.|...|++|++++++..... ++.....++.+.+          +.+...|++|.+.|
T Consensus         8 ~L~GK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~iDilVnnAG   87 (261)
T 4h15_A            8 NLRGKRALITAGTKGAGAATVSLFLELGAQVLTTARARPEGLPEELFVEADLTTKEGCAIVAEATRQRLGGVDVIVHMLG   87 (261)
T ss_dssp             CCTTCEEEESCCSSHHHHHHHHHHHHTTCEEEEEESSCCTTSCTTTEEECCTTSHHHHHHHHHHHHHHTSSCSEEEECCC
T ss_pred             CCCCCEEEEeccCcHHHHHHHHHHHHcCCEEEEEECCchhCCCcEEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            5789999999986 5999999999999999999998754321 1110011222222          12357899999765

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1

Probab=96.04  E-value=0.019  Score=59.20  Aligned_cols=88  Identities=14%  Similarity=0.141  Sum_probs=60.2

Q ss_pred             cCcEEEEEcCChhHHHHHHHHHhCCC--EEEEEeCCchhhhh-hh--cCC--c----ee---eCHHHHhcCCcEEEEcCC
Q psy4626          76 GGKQVVLCGYGEVGKGCCQSLKGLGC--VIYITEIDPICALQ-AC--MDG--F----SV---VKLNEVIRTVDIVVTATG  141 (542)
Q Consensus        76 ~GktVvViG~G~IG~~vA~~l~~~Ga--~Viv~d~dp~r~~~-A~--~~G--~----~v---~~l~e~l~~aDvVi~atG  141 (542)
                      +.++|+|+|.|.+|..+|..+...|.  +|..+|+++.++.. +.  .++  +    .+   .+.++ +++||+||.+.|
T Consensus        20 ~~~kV~ViGaG~vG~~~a~~la~~g~~~ev~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~t~d~~~-~~daDiVIitaG   98 (330)
T 3ldh_A           20 SYNKITVVGCDAVGMADAISVLMKDLADEVALVDVMEDKLKGEMMDLEHGSLFLHTAKIVSGKDYSV-SAGSKLVVITAG   98 (330)
T ss_dssp             CCCEEEEESTTHHHHHHHHHHHHHCCCSEEEEECSCHHHHHHHHHHHHHHGGGSCCSEEEEESSSCS-CSSCSEEEECCS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhhhhcccCCeEEEcCCHHH-hCCCCEEEEeCC
Confidence            57899999999999999999988887  99999998865431 11  011  1    11   13333 899999999877


Q ss_pred             Ccc--------cCC---------HHHHhccCCCeEEEecc
Q psy4626         142 NKN--------VVT---------REHMDKMKNGCVVCNMG  164 (542)
Q Consensus       142 ~~~--------lI~---------~e~l~~mk~GailvnvG  164 (542)
                      .+.        ++.         .+.+....+.+++++++
T Consensus        99 ~p~kpG~tR~dll~~N~~I~k~i~~~I~k~~P~a~ilvvt  138 (330)
T 3ldh_A           99 ARQQEGESRLNLVQRNVNIFKFIIPNIVKHSPDCLKELHP  138 (330)
T ss_dssp             CCCCSSCCTTGGGHHHHHHHHHHHHHHHHHCTTCEEEECS
T ss_pred             CCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCCCceEEeCC
Confidence            542        111         12344446788888877

>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A

Probab=96.03  E-value=0.018  Score=56.15  Aligned_cols=93  Identities=15%  Similarity=0.245  Sum_probs=62.1

Q ss_pred             cccCcEEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhc-CC--ce-----eeCHH---HH-------hcCCc
Q psy4626          74 MFGGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACM-DG--FS-----VVKLN---EV-------IRTVD  134 (542)
Q Consensus        74 ~l~GktVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~-~G--~~-----v~~l~---e~-------l~~aD  134 (542)
                      .+.||+++|.|. |-||+.+|+.|...|++|+++++++.+..+... .+  +.     +.+.+   ++       +...|
T Consensus         5 ~l~gk~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id   84 (255)
T 4eso_A            5 NYQGKKAIVIGGTHGMGLATVRRLVEGGAEVLLTGRNESNIARIREEFGPRVHALRSDIADLNEIAVLGAAAGQTLGAID   84 (255)
T ss_dssp             TTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGEEEEECCTTCHHHHHHHHHHHHHHHSSEE
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCcceEEEccCCCHHHHHHHHHHHHHHhCCCC
Confidence            367999999998 579999999999999999999998876543211 11  11     12222   11       24789


Q ss_pred             EEEEcCCCccc-----CC-------------------HHHHhccCCCeEEEeccCC
Q psy4626         135 IVVTATGNKNV-----VT-------------------REHMDKMKNGCVVCNMGHS  166 (542)
Q Consensus       135 vVi~atG~~~l-----I~-------------------~e~l~~mk~GailvnvG~g  166 (542)
                      ++|.+.|....     .+                   ...+..|++++.++|+++.
T Consensus        85 ~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS~  140 (255)
T 4eso_A           85 LLHINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIREGGSIVFTSSV  140 (255)
T ss_dssp             EEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCG
T ss_pred             EEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCEEEEECCh
Confidence            99998763211     01                   2234556677888888764

>1gq2_A Malic enzyme; oxidoreductase, pigeon liver, NADP-dependent, NAD-NADP selectivity, decarboxylase, malate, Mn2+; HET: NAP; 2.5A {Columba livia} SCOP: c.2.1.7 c.58.1.3 PDB: 2aw5_A

Probab=95.99  E-value=0.037  Score=60.22  Aligned_cols=122  Identities=14%  Similarity=0.216  Sum_probs=87.2

Q ss_pred             HhHHHHHHHHHHHHH---hhcCccccCcEEEEEcCChhHHHHHHHHHh----CCC-------EEEEEeCCc---------
Q psy4626          54 DNLYMCRESIIDSLK---RSTDVMFGGKQVVLCGYGEVGKGCCQSLKG----LGC-------VIYITEIDP---------  110 (542)
Q Consensus        54 d~~~g~~~s~~~ai~---r~~~~~l~GktVvViG~G~IG~~vA~~l~~----~Ga-------~Viv~d~dp---------  110 (542)
                      |...||+-.++.++.   +.++..+...++++.|+|.-|.++|..+..    .|+       +++++|..-         
T Consensus       256 DDiqGTa~V~lAgllnAlki~gk~l~d~riv~~GAGaAg~gia~ll~~~~~~~G~~~eeA~~~i~~~D~~Gli~~~r~~l  335 (555)
T 1gq2_A          256 DDIQGTASVAVAGLLAALRITKNRLSDHTVLFQGAGEAALGIANLIVMAMQKEGVSKEEAIKRIWMVDSKGLIVKGRASL  335 (555)
T ss_dssp             TTTHHHHHHHHHHHHHHHHHHTSCGGGCCEEEECCSHHHHHHHHHHHHHHHHHTCCHHHHHTTEEEEETTEECBTTCSSC
T ss_pred             CccchHHHHHHHHHHHHHHHhCCChhhcEEEEECCCHHHHHHHHHHHHHHHHcCCChHHHhCcEEEEECCCeeeCCCCCc
Confidence            455677755544443   345677888999999999999999999887    784       689888632         


Q ss_pred             --hhhhhhhcCCceeeCHHHHhc--CCcEEEEcCCCcccCCHHHHhccC---CCeEEEeccCCCc--ccChHhhc
Q psy4626         111 --ICALQACMDGFSVVKLNEVIR--TVDIVVTATGNKNVVTREHMDKMK---NGCVVCNMGHSNT--EIDVNSLR  176 (542)
Q Consensus       111 --~r~~~A~~~G~~v~~l~e~l~--~aDvVi~atG~~~lI~~e~l~~mk---~GailvnvG~g~~--eid~~aL~  176 (542)
                        .+...|.... ..-++.++++  ++|++|-+++.+++++++.++.|.   +.-+|.-.+....  |+..+...
T Consensus       336 ~~~k~~~A~~~~-~~~~L~eav~~vkp~vlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLSNPt~~aE~~pe~a~  409 (555)
T 1gq2_A          336 TPEKEHFAHEHC-EMKNLEDIVKDIKPTVLIGVAAIGGAFTQQILQDMAAFNKRPIIFALSNPTSKAECTAEQLY  409 (555)
T ss_dssp             CTTGGGGCBSCC-CCCCHHHHHHHHCCSEEEECSCCTTCSCHHHHHHHHHHCSSCEEEECCSSGGGCSSCHHHHH
T ss_pred             hHHHHHHHhhcC-CCCCHHHHHhhcCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEEECCCCCCccCcCHHHHH
Confidence              2222222211 2346888887  599999999878999999999996   6777777776543  77766544

>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}

Probab=95.97  E-value=0.02  Score=58.51  Aligned_cols=86  Identities=13%  Similarity=0.151  Sum_probs=58.4

Q ss_pred             EEEEEcCChhHHHHHHHHHhCCC--EEEEEeCCchhhh-hhh--c-----C--Ccee--eCHHHHhcCCcEEEEcCCCcc
Q psy4626          79 QVVLCGYGEVGKGCCQSLKGLGC--VIYITEIDPICAL-QAC--M-----D--GFSV--VKLNEVIRTVDIVVTATGNKN  144 (542)
Q Consensus        79 tVvViG~G~IG~~vA~~l~~~Ga--~Viv~d~dp~r~~-~A~--~-----~--G~~v--~~l~e~l~~aDvVi~atG~~~  144 (542)
                      +|+|+|+|.+|..+|..+...|.  +|+.+|+++.++. .+.  .     .  ...+  .+..+.+++||+||.+.|.+.
T Consensus         2 kv~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~~v~~~~~~~a~~~aDvVii~ag~~~   81 (314)
T 3nep_X            2 KVTVIGAGNVGATVAECVARQDVAKEVVMVDIKDGMPQGKALDMRESSPIHGFDTRVTGTNDYGPTEDSDVCIITAGLPR   81 (314)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCSSEEEEECSSTTHHHHHHHHHHHHHHHHTCCCEEEEESSSGGGTTCSEEEECCCC--
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCchHHHHHHHHHHhccccccCCCcEEEECCCHHHhCCCCEEEECCCCCC
Confidence            79999999999999999987776  9999999986642 111  0     1  1122  245678899999999987542


Q ss_pred             c---CC--------------HHHHhccCCCeEEEecc
Q psy4626         145 V---VT--------------REHMDKMKNGCVVCNMG  164 (542)
Q Consensus       145 l---I~--------------~e~l~~mk~GailvnvG  164 (542)
                      -   -.              .+.+....|.+++++++
T Consensus        82 kpG~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vivvt  118 (314)
T 3nep_X           82 SPGMSRDDLLAKNTEIVGGVTEQFVEGSPDSTIIVVA  118 (314)
T ss_dssp             -----CHHHHHHHHHHHHHHHHHHHTTCTTCEEEECC
T ss_pred             CCCCCHHHHHHhhHHHHHHHHHHHHHhCCCcEEEecC
Confidence            1   11              12334445778888877

>3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG, PSI-2, GFO/IDH/MO family, protein structure initiative; HET: MSE EPE; 1.80A {Porphyromonas gingivalis}

Probab=95.96  E-value=0.008  Score=60.78  Aligned_cols=80  Identities=19%  Similarity=0.368  Sum_probs=51.3

Q ss_pred             cEEEEEcCChhHHHHHHHHHh-CCCEEE-EEeCCchhhhhhhcCCcee---eCHHHHhcCCcEEEEcCCCcccCCHHHHh
Q psy4626          78 KQVVLCGYGEVGKGCCQSLKG-LGCVIY-ITEIDPICALQACMDGFSV---VKLNEVIRTVDIVVTATGNKNVVTREHMD  152 (542)
Q Consensus        78 ktVvViG~G~IG~~vA~~l~~-~Ga~Vi-v~d~dp~r~~~A~~~G~~v---~~l~e~l~~aDvVi~atG~~~lI~~e~l~  152 (542)
                      -+|+|+|+|.||+..+..++. -+++++ ++|++|.++..   .|..+   .++.+. .++|+|+.|+.+..-. .....
T Consensus        10 irv~IIG~G~iG~~~~~~l~~~~~~elvav~d~~~~~~~~---~g~~~~~~~~l~~~-~~~DvViiatp~~~h~-~~~~~   84 (304)
T 3bio_A           10 IRAAIVGYGNIGRYALQALREAPDFEIAGIVRRNPAEVPF---ELQPFRVVSDIEQL-ESVDVALVCSPSREVE-RTALE   84 (304)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCTTEEEEEEECC----------CCTTSCEESSGGGS-SSCCEEEECSCHHHHH-HHHHH
T ss_pred             CEEEEECChHHHHHHHHHHhcCCCCEEEEEEcCCHHHHHH---cCCCcCCHHHHHhC-CCCCEEEECCCchhhH-HHHHH
Confidence            489999999999999999886 467877 68998876543   44332   233333 6899999998753222 23455


Q ss_pred             ccCCCeEEEe
Q psy4626         153 KMKNGCVVCN  162 (542)
Q Consensus       153 ~mk~Gailvn  162 (542)
                      .++.|..++.
T Consensus        85 al~aG~~Vi~   94 (304)
T 3bio_A           85 ILKKGICTAD   94 (304)
T ss_dssp             HHTTTCEEEE
T ss_pred             HHHcCCeEEE
Confidence            6677777664

>3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum}

Probab=95.95  E-value=0.0068  Score=61.06  Aligned_cols=82  Identities=20%  Similarity=0.265  Sum_probs=56.9

Q ss_pred             cEEEEEcCChhHHHHHHHHHhC-CCEE-EEEeCCchhhhhhhcCCce-eeCHHHHhc--CCcEEEEcCCCcccCCHHHHh
Q psy4626          78 KQVVLCGYGEVGKGCCQSLKGL-GCVI-YITEIDPICALQACMDGFS-VVKLNEVIR--TVDIVVTATGNKNVVTREHMD  152 (542)
Q Consensus        78 ktVvViG~G~IG~~vA~~l~~~-Ga~V-iv~d~dp~r~~~A~~~G~~-v~~l~e~l~--~aDvVi~atG~~~lI~~e~l~  152 (542)
                      .+|+|||+|.+|+..+..++.. +.++ .++|+++.++...... .. ..+.++++.  ++|+|+.|+.+.... .-...
T Consensus        11 ~~igiIG~G~~g~~~~~~l~~~~~~~~v~v~d~~~~~~~~~~~~-~~~~~~~~~~l~~~~~D~V~i~tp~~~h~-~~~~~   88 (315)
T 3c1a_A           11 VRLALIGAGRWGKNYIRTIAGLPGAALVRLASSNPDNLALVPPG-CVIESDWRSVVSAPEVEAVIIATPPATHA-EITLA   88 (315)
T ss_dssp             EEEEEEECTTTTTTHHHHHHHCTTEEEEEEEESCHHHHTTCCTT-CEEESSTHHHHTCTTCCEEEEESCGGGHH-HHHHH
T ss_pred             ceEEEECCcHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHhh-CcccCCHHHHhhCCCCCEEEEeCChHHHH-HHHHH
Confidence            4899999999999999998876 5664 5899998876543333 33 346778874  799999997643222 23345


Q ss_pred             ccCCCeEEE
Q psy4626         153 KMKNGCVVC  161 (542)
Q Consensus       153 ~mk~Gailv  161 (542)
                      .++.|.-++
T Consensus        89 al~~Gk~v~   97 (315)
T 3c1a_A           89 AIASGKAVL   97 (315)
T ss_dssp             HHHTTCEEE
T ss_pred             HHHCCCcEE
Confidence            567776433

>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile}

Probab=95.94  E-value=0.0081  Score=60.27  Aligned_cols=83  Identities=7%  Similarity=0.018  Sum_probs=59.0

Q ss_pred             cEEEEEcCChhHHH-HHHHHHh-CCCEEE-EEeCCchhhhh-hhcCCce-eeCHHHHhcCCcEEEEcCCCcccCCHHHHh
Q psy4626          78 KQVVLCGYGEVGKG-CCQSLKG-LGCVIY-ITEIDPICALQ-ACMDGFS-VVKLNEVIRTVDIVVTATGNKNVVTREHMD  152 (542)
Q Consensus        78 ktVvViG~G~IG~~-vA~~l~~-~Ga~Vi-v~d~dp~r~~~-A~~~G~~-v~~l~e~l~~aDvVi~atG~~~lI~~e~l~  152 (542)
                      .+++|||+|.+|.. .+..++. -|++++ ++|+++.++.. +...|.. +.++++++.++|+|+.|+.+..-. .-...
T Consensus         7 ~~igiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~~~~~~~~~~~ll~~~D~V~i~tp~~~h~-~~~~~   85 (308)
T 3uuw_A            7 IKMGMIGLGSIAQKAYLPILTKSERFEFVGAFTPNKVKREKICSDYRIMPFDSIESLAKKCDCIFLHSSTETHY-EIIKI   85 (308)
T ss_dssp             CEEEEECCSHHHHHHTHHHHTSCSSSEEEEEECSCHHHHHHHHHHHTCCBCSCHHHHHTTCSEEEECCCGGGHH-HHHHH
T ss_pred             CcEEEEecCHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcCCCCcCCHHHHHhcCCEEEEeCCcHhHH-HHHHH
Confidence            58999999999986 7887876 477777 79999987654 3334544 467888888999999998653222 23345


Q ss_pred             ccCCCeEEE
Q psy4626         153 KMKNGCVVC  161 (542)
Q Consensus       153 ~mk~Gailv  161 (542)
                      .++.|.-++
T Consensus        86 al~~gk~vl   94 (308)
T 3uuw_A           86 LLNLGVHVY   94 (308)
T ss_dssp             HHHTTCEEE
T ss_pred             HHHCCCcEE
Confidence            566665444

>1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5

Probab=95.94  E-value=0.0075  Score=61.01  Aligned_cols=82  Identities=13%  Similarity=0.142  Sum_probs=56.6

Q ss_pred             EEEEEcCChhHH-HHHHHHHhC-CCEEEEEeCCchhhhh-hhcCCce--eeCHHHHh-cCCcEEEEcCCCcccCCHHHHh
Q psy4626          79 QVVLCGYGEVGK-GCCQSLKGL-GCVIYITEIDPICALQ-ACMDGFS--VVKLNEVI-RTVDIVVTATGNKNVVTREHMD  152 (542)
Q Consensus        79 tVvViG~G~IG~-~vA~~l~~~-Ga~Viv~d~dp~r~~~-A~~~G~~--v~~l~e~l-~~aDvVi~atG~~~lI~~e~l~  152 (542)
                      +|+|||+|.+|. ..+..++.. +.+++++|+++.++.. +...|..  +.+..+.+ .++|+|+.|+.+..-. .....
T Consensus         4 ~igiIG~G~ig~~~~~~~l~~~~~~~l~v~d~~~~~~~~~a~~~g~~~~~~~~~~~l~~~~D~V~i~tp~~~h~-~~~~~   82 (323)
T 1xea_A            4 KIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVLGTLATRYRVSATCTDYRDVLQYGVDAVMIHAATDVHS-TLAAF   82 (323)
T ss_dssp             EEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHHHHHHHHHTTCCCCCSSTTGGGGGCCSEEEECSCGGGHH-HHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHcCCCccccCHHHHhhcCCCEEEEECCchhHH-HHHHH
Confidence            799999999998 488888765 6788899999987653 3344654  34445555 6899999998643222 23345


Q ss_pred             ccCCCe-EEE
Q psy4626         153 KMKNGC-VVC  161 (542)
Q Consensus       153 ~mk~Ga-ilv  161 (542)
                      .++.|. +++
T Consensus        83 al~~Gk~V~~   92 (323)
T 1xea_A           83 FLHLGIPTFV   92 (323)
T ss_dssp             HHHTTCCEEE
T ss_pred             HHHCCCeEEE
Confidence            667776 444

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*

Probab=95.93  E-value=0.01  Score=60.45  Aligned_cols=67  Identities=27%  Similarity=0.348  Sum_probs=48.0

Q ss_pred             CcEEEEEcCChhHHHHHHHHHhCCC--EEEEEeCCchhhhh-hhc--CC-------cee-eCHHHHhcCCcEEEEcCCCc
Q psy4626          77 GKQVVLCGYGEVGKGCCQSLKGLGC--VIYITEIDPICALQ-ACM--DG-------FSV-VKLNEVIRTVDIVVTATGNK  143 (542)
Q Consensus        77 GktVvViG~G~IG~~vA~~l~~~Ga--~Viv~d~dp~r~~~-A~~--~G-------~~v-~~l~e~l~~aDvVi~atG~~  143 (542)
                      -++|+|+|.|.+|..+|..++..|.  +|..+|+++.++.. +..  +.       ..+ .+..+++++||+||.+.|.+
T Consensus         6 ~~kI~IIGaG~vG~sla~~l~~~~~~~ev~l~Di~~~~~~~~~~dl~~~~~~~~~~~~i~~~~~~al~~aDvViia~~~~   85 (316)
T 1ldn_A            6 GARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDYDDCRDADLVVICAGAN   85 (316)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCGGGTTTCSEEEECCSCC
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhhHHHHhhhcCCCeEEEcCcHHHhCCCCEEEEcCCCC
Confidence            4689999999999999999987675  89999999864321 110  00       111 12346789999999997643

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=95.93  E-value=0.0082  Score=64.42  Aligned_cols=66  Identities=24%  Similarity=0.314  Sum_probs=52.0

Q ss_pred             CcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhh-cCCceee-----C---HHHH-hcCCcEEEEcCCC
Q psy4626          77 GKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQAC-MDGFSVV-----K---LNEV-IRTVDIVVTATGN  142 (542)
Q Consensus        77 GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~-~~G~~v~-----~---l~e~-l~~aDvVi~atG~  142 (542)
                      ..+++|+|+|.+|..+|+.|...|.+|+++|.|+.+..... ..++.++     +   ++++ +..||+++-+|++
T Consensus         3 ~M~iiI~G~G~vG~~la~~L~~~~~~v~vId~d~~~~~~~~~~~~~~~i~Gd~~~~~~L~~Agi~~ad~~ia~t~~   78 (461)
T 4g65_A            3 AMKIIILGAGQVGGTLAENLVGENNDITIVDKDGDRLRELQDKYDLRVVNGHASHPDVLHEAGAQDADMLVAVTNT   78 (461)
T ss_dssp             CEEEEEECCSHHHHHHHHHTCSTTEEEEEEESCHHHHHHHHHHSSCEEEESCTTCHHHHHHHTTTTCSEEEECCSC
T ss_pred             cCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHhcCcEEEEEcCCCHHHHHhcCCCcCCEEEEEcCC
Confidence            45899999999999999999999999999999998876543 3455443     1   2333 5789999988864

>1bgv_A Glutamate dehydrogenase; oxidoreductase; HET: GLU; 1.90A {Clostridium symbiosum} SCOP: c.2.1.7 c.58.1.1 PDB: 1hrd_A 1k89_A 1aup_A 2yfh_A

Probab=95.93  E-value=0.014  Score=62.41  Aligned_cols=93  Identities=23%  Similarity=0.260  Sum_probs=62.5

Q ss_pred             cCccccCcEEEEEcCChhHHHHHHHHHhCCCEEEE-EeC-----------Cchh---hhhhh-cC-----------Ccee
Q psy4626          71 TDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYI-TEI-----------DPIC---ALQAC-MD-----------GFSV  123 (542)
Q Consensus        71 ~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv-~d~-----------dp~r---~~~A~-~~-----------G~~v  123 (542)
                      .+..+.|++|+|.|+|++|..+|+.|...|++|+. .|.           ||..   +.... ..           +...
T Consensus       224 ~G~~l~g~~v~VqG~GnVG~~~a~~L~~~GakvVavsD~~G~i~dp~Gi~d~edi~~l~~~k~~~~g~v~~y~~~~~a~~  303 (449)
T 1bgv_A          224 ENDTLVGKTVALAGFGNVAWGAAKKLAELGAKAVTLSGPDGYIYDPEGITTEEKINYMLEMRASGRNKVQDYADKFGVQF  303 (449)
T ss_dssp             TTCCSTTCEEEECCSSHHHHHHHHHHHHHTCEEEEEEETTEEEECTTCSCSHHHHHHHHHHHHHCCCCTHHHHHHHTCEE
T ss_pred             ccCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEeCCceEECCCcCCCHHHHHHHHHHHhccCCChhhcccccCCEE
Confidence            35678999999999999999999999999999885 662           3321   11100 00           2333


Q ss_pred             eCHHHHh-cCCcEEEEcCCCcccCCHHHHhccC-CCeEEEecc
Q psy4626         124 VKLNEVI-RTVDIVVTATGNKNVVTREHMDKMK-NGCVVCNMG  164 (542)
Q Consensus       124 ~~l~e~l-~~aDvVi~atG~~~lI~~e~l~~mk-~GailvnvG  164 (542)
                      ++.++++ ..|||++-|. ..+.|+.+....++ .|+.+|--|
T Consensus       304 i~~~e~~~~~~Dil~P~A-~~~~I~~~na~~l~a~g~kiV~Eg  345 (449)
T 1bgv_A          304 FPGEKPWGQKVDIIMPCA-TQNDVDLEQAKKIVANNVKYYIEV  345 (449)
T ss_dssp             EETCCGGGSCCSEEECCS-CTTCBCHHHHHHHHHTTCCEEECC
T ss_pred             eCchhhhcCCcceeeccc-cccccchhhHHHHHhcCCeEEEeC
Confidence            3333344 4799999876 55688877777775 466665444

>3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima}

Probab=95.92  E-value=0.0081  Score=61.29  Aligned_cols=82  Identities=18%  Similarity=0.245  Sum_probs=58.5

Q ss_pred             EEEEEcCChhHHHHHHHHHhC-CCEEE-EEeCCchhhhh-hhcCCc--eeeCHHHHhc--CCcEEEEcCCCcccCCHHHH
Q psy4626          79 QVVLCGYGEVGKGCCQSLKGL-GCVIY-ITEIDPICALQ-ACMDGF--SVVKLNEVIR--TVDIVVTATGNKNVVTREHM  151 (542)
Q Consensus        79 tVvViG~G~IG~~vA~~l~~~-Ga~Vi-v~d~dp~r~~~-A~~~G~--~v~~l~e~l~--~aDvVi~atG~~~lI~~e~l  151 (542)
                      +|+|||+|.+|...+..++.. +++++ ++|+++.++.. +...|.  .+.++++++.  ++|+|+.|+.+..-. ....
T Consensus         4 rvgiIG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~-~~~~   82 (344)
T 3ezy_A            4 RIGVIGLGRIGTIHAENLKMIDDAILYAISDVREDRLREMKEKLGVEKAYKDPHELIEDPNVDAVLVCSSTNTHS-ELVI   82 (344)
T ss_dssp             EEEEECCSHHHHHHHHHGGGSTTEEEEEEECSCHHHHHHHHHHHTCSEEESSHHHHHHCTTCCEEEECSCGGGHH-HHHH
T ss_pred             EEEEEcCCHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHhCCCceeCCHHHHhcCCCCCEEEEcCCCcchH-HHHH
Confidence            799999999999999988765 67766 68999987654 334454  2567888885  899999998653222 2344


Q ss_pred             hccCCCeEEE
Q psy4626         152 DKMKNGCVVC  161 (542)
Q Consensus       152 ~~mk~Gailv  161 (542)
                      ..++.|.-++
T Consensus        83 ~al~~gk~v~   92 (344)
T 3ezy_A           83 ACAKAKKHVF   92 (344)
T ss_dssp             HHHHTTCEEE
T ss_pred             HHHhcCCeEE
Confidence            5566666444

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=95.88  E-value=0.009  Score=61.13  Aligned_cols=66  Identities=15%  Similarity=0.167  Sum_probs=49.7

Q ss_pred             CcEEEEEcCChhHHHHHHHHHhCCC-EEEEEeCCchhhhhhh---cC-------C--cee-eCHHHHhcCCcEEEEcCCC
Q psy4626          77 GKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQAC---MD-------G--FSV-VKLNEVIRTVDIVVTATGN  142 (542)
Q Consensus        77 GktVvViG~G~IG~~vA~~l~~~Ga-~Viv~d~dp~r~~~A~---~~-------G--~~v-~~l~e~l~~aDvVi~atG~  142 (542)
                      ..+|+|+|+|.+|..+|..+...|. +|..+|+++.++....   ..       .  ... .+. +++++||+||.+.|.
T Consensus         4 ~~kI~VIGaG~vG~~ia~~la~~g~~~v~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t~d~-~al~~aD~Vi~a~g~   82 (322)
T 1t2d_A            4 KAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTY-DDLAGADVVIVTAGF   82 (322)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEECCG-GGGTTCSEEEECCSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhhhhcCCCcEEEECCCH-HHhCCCCEEEEeCCC
Confidence            3589999999999999999998897 9999999987653110   01       1  112 344 678999999999875


Q ss_pred             c
Q psy4626         143 K  143 (542)
Q Consensus       143 ~  143 (542)
                      +
T Consensus        83 p   83 (322)
T 1t2d_A           83 T   83 (322)
T ss_dssp             S
T ss_pred             C
Confidence            3

>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A

Probab=95.88  E-value=0.014  Score=60.58  Aligned_cols=39  Identities=21%  Similarity=0.261  Sum_probs=35.6

Q ss_pred             ccccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCch
Q psy4626          73 VMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPI  111 (542)
Q Consensus        73 ~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~  111 (542)
                      ..+.|++|+|+|.|.+|+.+++.++.+|.+|+++|.++.
T Consensus         8 ~~~~~~~IlIlG~G~lg~~la~aa~~lG~~viv~d~~~~   46 (377)
T 3orq_A            8 KLKFGATIGIIGGGQLGKMMAQSAQKMGYKVVVLDPSED   46 (377)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCTT
T ss_pred             cCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCC
Confidence            356899999999999999999999999999999997764

>3r7f_A Aspartate carbamoyltransferase; aspartate transcarbamoylase, carbamoyl phosphate, transferas catalytic cycle; 2.10A {Bacillus subtilis} PDB: 3r7d_A 3r7l_A* 2at2_A

Probab=95.87  E-value=0.08  Score=53.87  Aligned_cols=120  Identities=19%  Similarity=0.311  Sum_probs=80.8

Q ss_pred             hcccccceeecCch----hhhHHHHhHHHHHHHHHHHHHhhcCccccCcEEEEEcCC---hhHHHHHHHHHhCCCEEEEE
Q psy4626          34 AGKLTVPAMNVNDS----VTKTKFDNLYMCRESIIDSLKRSTDVMFGGKQVVLCGYG---EVGKGCCQSLKGLGCVIYIT  106 (542)
Q Consensus        34 ~~~L~~PV~~vn~s----~~K~~fd~~~g~~~s~~~ai~r~~~~~l~GktVvViG~G---~IG~~vA~~l~~~Ga~Viv~  106 (542)
                      .....+||||.-+.    ++-.+.|-.         .+.+..+ .+.|.+|+++|-|   ++....+..+..+|++|.++
T Consensus       110 a~~~~vPVINagdg~~~HPtQaLaDl~---------Ti~e~~g-~l~glkva~vGD~~~~rva~Sl~~~~~~~G~~v~~~  179 (304)
T 3r7f_A          110 VSQVNIPILNAGDGCGQHPTQSLLDLM---------TIYEEFN-TFKGLTVSIHGDIKHSRVARSNAEVLTRLGARVLFS  179 (304)
T ss_dssp             HHHCSSCEEESCCTTSCCHHHHHHHHH---------HHHHHHS-CCTTCEEEEESCCTTCHHHHHHHHHHHHTTCEEEEE
T ss_pred             HHhCCCCEEeCCCCCCcCcHHHHHHHH---------HHHHHhC-CCCCCEEEEEcCCCCcchHHHHHHHHHHcCCEEEEE
Confidence            34567899988543    333333321         2333322 4789999999986   58899999999999999998


Q ss_pred             eCCchhhhhhhcCCceeeCHHHHhcCCcEEEEcCCC---------------cccCCHHHHhccCCCeEEEeccC
Q psy4626         107 EIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGN---------------KNVVTREHMDKMKNGCVVCNMGH  165 (542)
Q Consensus       107 d~dp~r~~~A~~~G~~v~~l~e~l~~aDvVi~atG~---------------~~lI~~e~l~~mk~GailvnvG~  165 (542)
                      -+..... .....| ...+++++++++|||++....               .--++.+.++.+|+++++.-++.
T Consensus       180 ~P~~~~~-~~~~~g-~~~d~~eav~~aDvvyt~~~q~er~~~~~~~~~~~~~y~v~~~~l~~a~~~ai~mHclP  251 (304)
T 3r7f_A          180 GPSEWQD-EENTFG-TYVSMDEAVESSDVVMLLRIQNERHQSAVSQEGYLNKYGLTVERAERMKRHAIIMHPAP  251 (304)
T ss_dssp             SCGGGSC-TTCSSC-EECCHHHHHHHCSEEEECCCCTTTCCSSCCSTTHHHHHSBCHHHHTTSCTTCEEECCSC
T ss_pred             CCCccCc-chhhcC-ccCCHHHHhCCCCEEEeccchhhccccchhHHHHhCCCccCHHHHhhcCCCCEEECCCC
Confidence            6433222 111223 356889999999999995320               12366777888899998887764

>1o0s_A NAD-ME, NAD-dependent malic enzyme; oxidoreductase, oxidative decarboxylase, rossmann fold, MAla dehydrogenase; HET: NAI; 2.00A {Ascaris suum} SCOP: c.2.1.7 c.58.1.3 PDB: 1llq_A*

Probab=95.86  E-value=0.037  Score=60.64  Aligned_cols=122  Identities=18%  Similarity=0.257  Sum_probs=87.9

Q ss_pred             HhHHHHHHHHHHHHH---hhcCccccCcEEEEEcCChhHHHHHHHHHh----CCC-------EEEEEeCCch--------
Q psy4626          54 DNLYMCRESIIDSLK---RSTDVMFGGKQVVLCGYGEVGKGCCQSLKG----LGC-------VIYITEIDPI--------  111 (542)
Q Consensus        54 d~~~g~~~s~~~ai~---r~~~~~l~GktVvViG~G~IG~~vA~~l~~----~Ga-------~Viv~d~dp~--------  111 (542)
                      |...||+-.++.++.   +.++..+...+++|.|+|.-|.++|..+..    .|+       +++++|..-.        
T Consensus       294 DDiqGTA~V~lAgllnAlki~gk~l~d~riv~~GAGaAgigia~ll~~~m~~~Gl~~eeA~~~i~~vD~~Gli~~~r~~l  373 (605)
T 1o0s_A          294 DDIQGTASVIVAGLLTCTRVTKKLVSQEKYLFFGAGAASTGIAEMIVHQMQNEGISKEEACNRIYLMDIDGLVTKNRKEM  373 (605)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCCCGGGCCEEEECCSHHHHHHHHHHHHHHHTTTCCHHHHHHTEEEEETTEECBTTCSSC
T ss_pred             cccchHHHHHHHHHHHHHHHhCCChhhcEEEEECCCHHHHHHHHHHHHHHHHcCCChhhhhCeEEEEECCCceeCCCCCc
Confidence            566788755555443   345677888999999999999999999987    895       6888886331        


Q ss_pred             ---hhhhhhcCCceeeCHHHHhc--CCcEEEEcCCCcccCCHHHHhccC---CCeEEEeccCCCc--ccChHhhc
Q psy4626         112 ---CALQACMDGFSVVKLNEVIR--TVDIVVTATGNKNVVTREHMDKMK---NGCVVCNMGHSNT--EIDVNSLR  176 (542)
Q Consensus       112 ---r~~~A~~~G~~v~~l~e~l~--~aDvVi~atG~~~lI~~e~l~~mk---~GailvnvG~g~~--eid~~aL~  176 (542)
                         +...|.... ..-++.++++  ++|++|-+++.+++++++.++.|.   +.-+|.-.+....  |+..+...
T Consensus       374 ~~~k~~~A~~~~-~~~~L~eav~~vkpdVlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLSNPt~~aE~~pe~a~  447 (605)
T 1o0s_A          374 NPRHVQFAKDMP-ETTSILEVIRAARPGALIGASTVRGAFNEEVIRAMAEINERPIIFALSNPTSKAECTAEEAY  447 (605)
T ss_dssp             CGGGTTTCBSSC-CCCCHHHHHHHHCCSEEEECSSCTTCSCHHHHHHHHHHCSSCEEEECCSSGGGCSSCHHHHH
T ss_pred             hHHHHHHHhhcC-CCCCHHHHHhhcCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEEECCCCCCCcCcCHHHHH
Confidence               222222111 1346888887  599999999878999999999996   6777777776543  77766544

>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*

Probab=95.86  E-value=0.02  Score=57.08  Aligned_cols=38  Identities=16%  Similarity=0.293  Sum_probs=34.0

Q ss_pred             cccCcEEEEEcC-Ch--hHHHHHHHHHhCCCEEEEEeCCch
Q psy4626          74 MFGGKQVVLCGY-GE--VGKGCCQSLKGLGCVIYITEIDPI  111 (542)
Q Consensus        74 ~l~GktVvViG~-G~--IG~~vA~~l~~~Ga~Viv~d~dp~  111 (542)
                      .+.||+++|.|. |.  ||+.+|+.|...|++|+++++++.
T Consensus        28 ~l~gk~~lVTGasg~~GIG~aia~~la~~G~~V~~~~r~~~   68 (293)
T 3grk_A           28 LLQGKRGLILGVANNRSIAWGIAKAAREAGAELAFTYQGDA   68 (293)
T ss_dssp             TTTTCEEEEECCCSSSSHHHHHHHHHHHTTCEEEEEECSHH
T ss_pred             cCCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEEcCCHH
Confidence            478999999998 45  999999999999999999998853

>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*

Probab=95.83  E-value=0.012  Score=60.31  Aligned_cols=83  Identities=14%  Similarity=-0.016  Sum_probs=58.3

Q ss_pred             cEEEEEcCChhHH-HHHHHHHhC-CCEEE-EEeCCchhhhh-hhcCCce-eeCHHHHhc--CCcEEEEcCCCcccCCHHH
Q psy4626          78 KQVVLCGYGEVGK-GCCQSLKGL-GCVIY-ITEIDPICALQ-ACMDGFS-VVKLNEVIR--TVDIVVTATGNKNVVTREH  150 (542)
Q Consensus        78 ktVvViG~G~IG~-~vA~~l~~~-Ga~Vi-v~d~dp~r~~~-A~~~G~~-v~~l~e~l~--~aDvVi~atG~~~lI~~e~  150 (542)
                      .+++|||+|.+|. ..+..++.. |++|+ ++|+++.++.. +...|.. +.++++++.  +.|+|+.|+.+..-. ...
T Consensus        28 ~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g~~~~~~~~~ll~~~~~D~V~i~tp~~~h~-~~~  106 (350)
T 3rc1_A           28 IRVGVIGCADIAWRRALPALEAEPLTEVTAIASRRWDRAKRFTERFGGEPVEGYPALLERDDVDAVYVPLPAVLHA-EWI  106 (350)
T ss_dssp             EEEEEESCCHHHHHTHHHHHHHCTTEEEEEEEESSHHHHHHHHHHHCSEEEESHHHHHTCTTCSEEEECCCGGGHH-HHH
T ss_pred             eEEEEEcCcHHHHHHHHHHHHhCCCeEEEEEEcCCHHHHHHHHHHcCCCCcCCHHHHhcCCCCCEEEECCCcHHHH-HHH
Confidence            5899999999998 688888877 77765 78999887654 3344654 467888884  689999997543222 233


Q ss_pred             HhccCCCeEEE
Q psy4626         151 MDKMKNGCVVC  161 (542)
Q Consensus       151 l~~mk~Gailv  161 (542)
                      ...++.|.-++
T Consensus       107 ~~al~aGk~Vl  117 (350)
T 3rc1_A          107 DRALRAGKHVL  117 (350)
T ss_dssp             HHHHHTTCEEE
T ss_pred             HHHHHCCCcEE
Confidence            45566665443

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=95.78  E-value=0.029  Score=54.95  Aligned_cols=36  Identities=22%  Similarity=0.225  Sum_probs=33.1

Q ss_pred             cccCcEEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCC
Q psy4626          74 MFGGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEID  109 (542)
Q Consensus        74 ~l~GktVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~d  109 (542)
                      .+.||+++|.|. |-||+.+|+.|...|++|++++++
T Consensus         7 ~l~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~~~   43 (287)
T 3pxx_A            7 RVQDKVVLVTGGARGQGRSHAVKLAEEGADIILFDIC   43 (287)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             ccCCCEEEEeCCCChHHHHHHHHHHHCCCeEEEEccc
Confidence            468999999998 579999999999999999999986

>1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2

Probab=95.78  E-value=0.017  Score=56.10  Aligned_cols=41  Identities=22%  Similarity=0.335  Sum_probs=36.2

Q ss_pred             cccCcEEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCchhhh
Q psy4626          74 MFGGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICAL  114 (542)
Q Consensus        74 ~l~GktVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~  114 (542)
                      .+.||+++|.|. |-||+.+++.|...|++|+++++++.+..
T Consensus         3 ~l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~   44 (253)
T 1hxh_A            3 RLQGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQ   44 (253)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHHHHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence            367999999998 68999999999999999999999886544

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...

Probab=95.77  E-value=0.021  Score=58.73  Aligned_cols=90  Identities=16%  Similarity=0.273  Sum_probs=61.7

Q ss_pred             ccCcEEEEEcCChhHHHHHHHHHhCCC--EEEEEeCCchhhhh-hh--cCC--c----ee---eCHHHHhcCCcEEEEcC
Q psy4626          75 FGGKQVVLCGYGEVGKGCCQSLKGLGC--VIYITEIDPICALQ-AC--MDG--F----SV---VKLNEVIRTVDIVVTAT  140 (542)
Q Consensus        75 l~GktVvViG~G~IG~~vA~~l~~~Ga--~Viv~d~dp~r~~~-A~--~~G--~----~v---~~l~e~l~~aDvVi~at  140 (542)
                      ...++|+|+|+|.+|..+|..+...|.  ++..+|+++.++.. +.  .+.  +    .+   .+. +.+++||+||.+.
T Consensus        17 ~~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~~~d~-~~~~~aDiVvi~a   95 (331)
T 4aj2_A           17 VPQNKITVVGVGAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLKTPKIVSSKDY-SVTANSKLVIITA   95 (331)
T ss_dssp             CCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCSCCEEEECSSG-GGGTTEEEEEECC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEeCChHHHHHHHHhhhhhhhccCCCeEEEcCCH-HHhCCCCEEEEcc
Confidence            467899999999999999999988886  89999998765431 11  111  1    11   123 4689999999988


Q ss_pred             CCcc--------cCC---------HHHHhccCCCeEEEeccC
Q psy4626         141 GNKN--------VVT---------REHMDKMKNGCVVCNMGH  165 (542)
Q Consensus       141 G~~~--------lI~---------~e~l~~mk~GailvnvG~  165 (542)
                      |.+.        ++.         .+.+....|.+++++++-
T Consensus        96 G~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~~p~a~vlvvtN  137 (331)
T 4aj2_A           96 GARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPQCKLLIVSN  137 (331)
T ss_dssp             SCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECSS
T ss_pred             CCCCCCCccHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence            7432        111         123444568889988883

>4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens}

Probab=95.75  E-value=0.027  Score=55.58  Aligned_cols=69  Identities=16%  Similarity=0.250  Sum_probs=48.8

Q ss_pred             ccccCcEEEEEcCC-hhHHHHHHHHHhCCCEEEEEeCCchh--hhhhhcCCcee----eCH---H---HHh--cCCcEEE
Q psy4626          73 VMFGGKQVVLCGYG-EVGKGCCQSLKGLGCVIYITEIDPIC--ALQACMDGFSV----VKL---N---EVI--RTVDIVV  137 (542)
Q Consensus        73 ~~l~GktVvViG~G-~IG~~vA~~l~~~Ga~Viv~d~dp~r--~~~A~~~G~~v----~~l---~---e~l--~~aDvVi  137 (542)
                      ..+.||+++|.|.+ -||+.+|+.|...|++|++++++...  ..+....|..+    .++   +   +++  ...|++|
T Consensus         5 f~L~GKvalVTGas~GIG~aiA~~la~~Ga~Vvi~~r~~~~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~g~iDiLV   84 (247)
T 4hp8_A            5 FSLEGRKALVTGANTGLGQAIAVGLAAAGAEVVCAARRAPDETLDIIAKDGGNASALLIDFADPLAAKDSFTDAGFDILV   84 (247)
T ss_dssp             TCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCCHHHHHHHHHTTCCEEEEECCTTSTTTTTTSSTTTCCCEEE
T ss_pred             cCCCCCEEEEeCcCCHHHHHHHHHHHHcCCEEEEEeCCcHHHHHHHHHHhCCcEEEEEccCCCHHHHHHHHHhCCCCEEE
Confidence            35789999999996 59999999999999999999987642  12223344331    122   1   112  3689999


Q ss_pred             EcCC
Q psy4626         138 TATG  141 (542)
Q Consensus       138 ~atG  141 (542)
                      .+.|
T Consensus        85 NNAG   88 (247)
T 4hp8_A           85 NNAG   88 (247)
T ss_dssp             ECCC
T ss_pred             ECCC
Confidence            9776

>1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A {Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3 PDB: 1dap_A* 2dap_A* 3dap_A*

Probab=95.73  E-value=0.012  Score=59.93  Aligned_cols=80  Identities=14%  Similarity=0.193  Sum_probs=56.1

Q ss_pred             EEEEEcCChhHHHHHHHHHhC-CCE-EEEEeCCchhhhhhhcCCcee-eCHHHHhcCCcEEEEcCCCcccCCHHHHhccC
Q psy4626          79 QVVLCGYGEVGKGCCQSLKGL-GCV-IYITEIDPICALQACMDGFSV-VKLNEVIRTVDIVVTATGNKNVVTREHMDKMK  155 (542)
Q Consensus        79 tVvViG~G~IG~~vA~~l~~~-Ga~-Viv~d~dp~r~~~A~~~G~~v-~~l~e~l~~aDvVi~atG~~~lI~~e~l~~mk  155 (542)
                      +|+|+|+|.+|+.+++.+... +++ |.++|+++.+ ..+  .|..+ .++++++.++|+|+.|+.+.... ......++
T Consensus         5 rV~IiG~G~mG~~~~~~l~~~~~~elvav~d~~~~~-~~~--~gv~~~~d~~~ll~~~DvViiatp~~~h~-~~~~~al~   80 (320)
T 1f06_A            5 RVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATL-DTK--TPVFDVADVDKHADDVDVLFLCMGSATDI-PEQAPKFA   80 (320)
T ss_dssp             EEEEECCSHHHHHHHHHHTTCSSEEEEEEEESSSCC-SSS--SCEEEGGGGGGTTTTCSEEEECSCTTTHH-HHHHHHHT
T ss_pred             EEEEEeecHHHHHHHHHHhcCCCCEEEEEEcCCHHH-hhc--CCCceeCCHHHHhcCCCEEEEcCCcHHHH-HHHHHHHH
Confidence            799999999999999998876 566 4578988655 212  34443 35566667899999998654222 24556677


Q ss_pred             CCeEEEe
Q psy4626         156 NGCVVCN  162 (542)
Q Consensus       156 ~Gailvn  162 (542)
                      .|.-++.
T Consensus        81 aG~~Vv~   87 (320)
T 1f06_A           81 QFACTVD   87 (320)
T ss_dssp             TTSEEEC
T ss_pred             CCCEEEE
Confidence            7776654

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=95.71  E-value=0.019  Score=54.00  Aligned_cols=64  Identities=23%  Similarity=0.234  Sum_probs=48.8

Q ss_pred             cEEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceee-----C---HHHHhcCCcEEEEcCCC
Q psy4626          78 KQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVV-----K---LNEVIRTVDIVVTATGN  142 (542)
Q Consensus        78 ktVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~-----~---l~e~l~~aDvVi~atG~  142 (542)
                      ++|+|+|. |.||+.+++.|...|.+|+++++++.+.... ..++.++     +   +.++++++|+||.+.|.
T Consensus         5 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~-~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a~~   77 (227)
T 3dhn_A            5 KKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEKIKIE-NEHLKVKKADVSSLDEVCEVCKGADAVISAFNP   77 (227)
T ss_dssp             CEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCGGGCCCC-CTTEEEECCCTTCHHHHHHHHTTCSEEEECCCC
T ss_pred             CEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCcccchhc-cCceEEEEecCCCHHHHHHHhcCCCEEEEeCcC
Confidence            68999995 9999999999999999999999988654321 1333322     2   34567899999998764

>1pg5_A Aspartate carbamoyltransferase; 2.60A {Sulfolobus acidocaldarius} SCOP: c.78.1.1 c.78.1.1 PDB: 2be9_A*

Probab=95.71  E-value=0.082  Score=53.66  Aligned_cols=130  Identities=18%  Similarity=0.227  Sum_probs=85.4

Q ss_pred             hcccccceeecCch----hhhHHHHhHHHHHHHHHHHHHhhcCccccCcEEEEEcC---ChhHHHHHHHHHhC-CCEEEE
Q psy4626          34 AGKLTVPAMNVNDS----VTKTKFDNLYMCRESIIDSLKRSTDVMFGGKQVVLCGY---GEVGKGCCQSLKGL-GCVIYI  105 (542)
Q Consensus        34 ~~~L~~PV~~vn~s----~~K~~fd~~~g~~~s~~~ai~r~~~~~l~GktVvViG~---G~IG~~vA~~l~~~-Ga~Viv  105 (542)
                      .....+||||.-++    ++-.+.|-.         .+++..+ .+.|.+|+++|-   |++....+..+..+ |++|.+
T Consensus       112 a~~~~vPVINaG~g~~~HPtQ~LaDl~---------Ti~e~~g-~l~gl~va~vGD~~~~rva~Sl~~~~~~~~g~~v~~  181 (299)
T 1pg5_A          112 SEISDIPVINAGDGKHEHPTQAVIDIY---------TINKHFN-TIDGLVFALLGDLKYARTVNSLLRILTRFRPKLVYL  181 (299)
T ss_dssp             HHHCSSCEEEEEETTTBCHHHHHHHHH---------HHHHHHS-CSTTCEEEEEECCSSCHHHHHHHHHGGGSCCSEEEE
T ss_pred             HHhCCCCEEeCCCCCCcCcHHHHHHHH---------HHHHHhC-CcCCcEEEEECCCCCCchHHHHHHHHHhCCCCEEEE
Confidence            33556899988443    333333321         2332222 478999999998   58999999999999 999999


Q ss_pred             EeCCchhhhh--hhcCCce---eeCHHHHhcCCcEEEEcCCC---------------cccCCHHHHhccCCCeEEEeccC
Q psy4626         106 TEIDPICALQ--ACMDGFS---VVKLNEVIRTVDIVVTATGN---------------KNVVTREHMDKMKNGCVVCNMGH  165 (542)
Q Consensus       106 ~d~dp~r~~~--A~~~G~~---v~~l~e~l~~aDvVi~atG~---------------~~lI~~e~l~~mk~GailvnvG~  165 (542)
                      +-+.......  +...|..   ..+++++++++|+|.+..-.               ..-++.+.++.+|+++++.-++-
T Consensus       182 ~~P~~~~~~~~~~~~~g~~~~~~~d~~eav~~aDvvyt~~~q~er~~~~~~~~~~~~~y~v~~~~l~~a~~~ai~mH~lP  261 (299)
T 1pg5_A          182 ISPQLLRARKEILDELNYPVKEVENPFEVINEVDVLYVTRIQKERFVDEMEYEKIKGSYIVSLDLANKMKKDSIILHPLP  261 (299)
T ss_dssp             ECCGGGCCCHHHHTTCCSCEEEESCGGGTGGGCSEEEEECCCSTTSSCHHHHHHHGGGGSBCHHHHHTSCTTCEEECCSC
T ss_pred             ECCchhcCCHHHHHHcCCeEEEeCCHHHHhcCCCEEEeCCcccccccCHHHHHHhhcCcccCHHHHHhcCCCCEEECCCC
Confidence            8643322211  2344543   24688999999999995321               34567778888889988887775


Q ss_pred             CCcccChH
Q psy4626         166 SNTEIDVN  173 (542)
Q Consensus       166 g~~eid~~  173 (542)
                      -..||+-+
T Consensus       262 rg~EI~~e  269 (299)
T 1pg5_A          262 RVNEIDRK  269 (299)
T ss_dssp             CSSSBCGG
T ss_pred             CCCccCHH
Confidence            34444433

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=95.70  E-value=0.024  Score=57.39  Aligned_cols=64  Identities=16%  Similarity=0.225  Sum_probs=47.3

Q ss_pred             EEEEEcCChhHHHHHHHHHh--CCCEEEEEeCCchhhhhhh---cCC---------cee-eCHHHHhcCCcEEEEcCCCc
Q psy4626          79 QVVLCGYGEVGKGCCQSLKG--LGCVIYITEIDPICALQAC---MDG---------FSV-VKLNEVIRTVDIVVTATGNK  143 (542)
Q Consensus        79 tVvViG~G~IG~~vA~~l~~--~Ga~Viv~d~dp~r~~~A~---~~G---------~~v-~~l~e~l~~aDvVi~atG~~  143 (542)
                      +|+|+|.|.+|..+|..+..  +|.+|+++|+++.+.....   ..+         ... .+.++ ++++|+||.+.|++
T Consensus         2 kI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~~-l~~aDvViiav~~p   80 (310)
T 1guz_A            2 KITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSNDYAD-TANSDIVIITAGLP   80 (310)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESCGGG-GTTCSEEEECCSCC
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHhHHhhhhcccCCcEEEECCCHHH-HCCCCEEEEeCCCC
Confidence            79999999999999999986  4789999999987654211   111         112 34444 88999999998754

>1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A

Probab=95.67  E-value=0.03  Score=53.59  Aligned_cols=41  Identities=17%  Similarity=0.182  Sum_probs=35.9

Q ss_pred             cccCcEEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCchhhh
Q psy4626          74 MFGGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICAL  114 (542)
Q Consensus        74 ~l~GktVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~  114 (542)
                      .+.|++++|+|. |.||+.+++.|...|++|+++++++.+..
T Consensus         3 ~~~~k~vlVtGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~   44 (251)
T 1zk4_A            3 RLDGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGE   44 (251)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH
T ss_pred             CCCCcEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence            357999999997 78999999999999999999999876543

>3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp}

Probab=95.66  E-value=0.018  Score=59.35  Aligned_cols=82  Identities=21%  Similarity=0.270  Sum_probs=56.4

Q ss_pred             cEEEEEcCChhHHH-HHHHHHhC-CCEEE-EEeCCchhhhhhhcCCce-eeCHHHHhc--CCcEEEEcCCCcccCCHHHH
Q psy4626          78 KQVVLCGYGEVGKG-CCQSLKGL-GCVIY-ITEIDPICALQACMDGFS-VVKLNEVIR--TVDIVVTATGNKNVVTREHM  151 (542)
Q Consensus        78 ktVvViG~G~IG~~-vA~~l~~~-Ga~Vi-v~d~dp~r~~~A~~~G~~-v~~l~e~l~--~aDvVi~atG~~~lI~~e~l  151 (542)
                      -+|+|||+|.+|+. .+..++.. +++|+ ++|+++.++. +...+.. +.++++++.  +.|+|+.||.+..-. ....
T Consensus         8 ~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~-~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~H~-~~~~   85 (364)
T 3e82_A            8 INIALIGYGFVGKTFHAPLIRSVPGLNLAFVASRDEEKVK-RDLPDVTVIASPEAAVQHPDVDLVVIASPNATHA-PLAR   85 (364)
T ss_dssp             EEEEEECCSHHHHHTHHHHHHTSTTEEEEEEECSCHHHHH-HHCTTSEEESCHHHHHTCTTCSEEEECSCGGGHH-HHHH
T ss_pred             ceEEEECCCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHHH-hhCCCCcEECCHHHHhcCCCCCEEEEeCChHHHH-HHHH
Confidence            47999999999986 67777765 77765 7899987654 2233444 457888885  799999997542211 2345


Q ss_pred             hccCCCeEEE
Q psy4626         152 DKMKNGCVVC  161 (542)
Q Consensus       152 ~~mk~Gailv  161 (542)
                      ..++.|.-++
T Consensus        86 ~al~aGk~Vl   95 (364)
T 3e82_A           86 LALNAGKHVV   95 (364)
T ss_dssp             HHHHTTCEEE
T ss_pred             HHHHCCCcEE
Confidence            5566666554

>2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A*

Probab=95.66  E-value=0.018  Score=56.63  Aligned_cols=37  Identities=22%  Similarity=0.323  Sum_probs=33.9

Q ss_pred             ccCcEEEEEcC---ChhHHHHHHHHHhCCCEEEEEeCCch
Q psy4626          75 FGGKQVVLCGY---GEVGKGCCQSLKGLGCVIYITEIDPI  111 (542)
Q Consensus        75 l~GktVvViG~---G~IG~~vA~~l~~~Ga~Viv~d~dp~  111 (542)
                      +.||+++|.|.   |-||+.+|+.|...|++|+++++++.
T Consensus         4 l~~k~vlVTGas~~~gIG~~~a~~l~~~G~~V~~~~r~~~   43 (275)
T 2pd4_A            4 LKGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNES   43 (275)
T ss_dssp             TTTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTT
T ss_pred             CCCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            57999999998   58999999999999999999998874

>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0

Probab=95.66  E-value=0.03  Score=54.99  Aligned_cols=69  Identities=17%  Similarity=0.258  Sum_probs=49.7

Q ss_pred             cccCcEEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCchhhhhhh-cCC--ce-----eeCH---HHHh-------cCCc
Q psy4626          74 MFGGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQAC-MDG--FS-----VVKL---NEVI-------RTVD  134 (542)
Q Consensus        74 ~l~GktVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~-~~G--~~-----v~~l---~e~l-------~~aD  134 (542)
                      .+.||+++|.|. |-||+.+|+.|...|++|+++++++.+..+.. ..+  ..     +.+.   ++++       ...|
T Consensus         8 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id   87 (271)
T 3tzq_B            8 ELENKVAIITGACGGIGLETSRVLARAGARVVLADLPETDLAGAAASVGRGAVHHVVDLTNEVSVRALIDFTIDTFGRLD   87 (271)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSCHHHHHHHHCTTCEEEECCTTCHHHHHHHHHHHHHHHSCCC
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhCCCeEEEECCCCCHHHHHHHHHHHHHHcCCCC
Confidence            468999999998 67999999999999999999999886654321 112  11     1222   2222       3789


Q ss_pred             EEEEcCCC
Q psy4626         135 IVVTATGN  142 (542)
Q Consensus       135 vVi~atG~  142 (542)
                      ++|.+.|.
T Consensus        88 ~lv~nAg~   95 (271)
T 3tzq_B           88 IVDNNAAH   95 (271)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCCC
Confidence            99998764

>2i6u_A Otcase, ornithine carbamoyltransferase; X-RAY crystallography, ornithine carbamyoltransferase, carbamoyl phosphate, L- norvaline; 2.20A {Mycobacterium tuberculosis} PDB: 2p2g_A

Probab=95.66  E-value=0.12  Score=52.69  Aligned_cols=100  Identities=15%  Similarity=0.144  Sum_probs=72.4

Q ss_pred             cccCcEEEEEcCC--hhHHHHHHHHHhCCCEEEEEeCCchhh-----hh----hhcCCce---eeCHHHHhcCCcEEEEc
Q psy4626          74 MFGGKQVVLCGYG--EVGKGCCQSLKGLGCVIYITEIDPICA-----LQ----ACMDGFS---VVKLNEVIRTVDIVVTA  139 (542)
Q Consensus        74 ~l~GktVvViG~G--~IG~~vA~~l~~~Ga~Viv~d~dp~r~-----~~----A~~~G~~---v~~l~e~l~~aDvVi~a  139 (542)
                      .+.|.+|+++|-|  ++....+..+..+|++|.++-+.....     ..    |...|..   +.+++++++++|+|.+.
T Consensus       145 ~l~gl~va~vGD~~~rva~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~a~~~G~~~~~~~d~~eav~~aDvvy~~  224 (307)
T 2i6u_A          145 ALRGLRLSYFGDGANNMAHSLLLGGVTAGIHVTVAAPEGFLPDPSVRAAAERRAQDTGASVTVTADAHAAAAGADVLVTD  224 (307)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHHHTTCEEEEECCTTSCCCHHHHHHHHHHHHHHTCCEEEESCHHHHHTTCSEEEEC
T ss_pred             CcCCeEEEEECCCCcCcHHHHHHHHHHCCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEECHHHHhcCCCEEEec
Confidence            4789999999996  899999999999999999985432211     11    2244532   35688999999999994


Q ss_pred             C----C------------CcccCCHHHHhccCCCeEEEeccCC--CcccChH
Q psy4626         140 T----G------------NKNVVTREHMDKMKNGCVVCNMGHS--NTEIDVN  173 (542)
Q Consensus       140 t----G------------~~~lI~~e~l~~mk~GailvnvG~g--~~eid~~  173 (542)
                      .    |            ...-++.+.++.+|+++++.-++-.  ..||+-+
T Consensus       225 ~w~smg~~~~~~~~~~~~~~y~v~~~~l~~a~~~ai~mH~lP~~Rg~EI~~e  276 (307)
T 2i6u_A          225 TWTSMGQENDGLDRVKPFRPFQLNSRLLALADSDAIVLHCLPAHRGDEITDA  276 (307)
T ss_dssp             CSSCTTCTTSCCCSSGGGGGGCBCHHHHHHSCTTCEEEECSCCCBTTTBCHH
T ss_pred             ceecCCcccchHHHHHHHhhcCCCHHHHhhcCCCcEEECCCCCCCCcccCHh
Confidence            3    2            1244677888889999999887754  3455544

>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis}

Probab=95.66  E-value=0.011  Score=60.18  Aligned_cols=82  Identities=15%  Similarity=0.059  Sum_probs=58.3

Q ss_pred             cEEEEEcCChhHHHHHHHHHhC-CCEEE-EEeCCchhhhh-hhcCCce--eeCHHHHhc--CCcEEEEcCCCcccCCHHH
Q psy4626          78 KQVVLCGYGEVGKGCCQSLKGL-GCVIY-ITEIDPICALQ-ACMDGFS--VVKLNEVIR--TVDIVVTATGNKNVVTREH  150 (542)
Q Consensus        78 ktVvViG~G~IG~~vA~~l~~~-Ga~Vi-v~d~dp~r~~~-A~~~G~~--v~~l~e~l~--~aDvVi~atG~~~lI~~e~  150 (542)
                      .+++|||+|.+|...+..++.. +++|+ ++|+++.++.. +...|..  +.++++++.  ++|+|+.|+.+..-. ...
T Consensus         6 ~~igiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~-~~~   84 (330)
T 3e9m_A            6 IRYGIMSTAQIVPRFVAGLRESAQAEVRGIASRRLENAQKMAKELAIPVAYGSYEELCKDETIDIIYIPTYNQGHY-SAA   84 (330)
T ss_dssp             EEEEECSCCTTHHHHHHHHHHSSSEEEEEEBCSSSHHHHHHHHHTTCCCCBSSHHHHHHCTTCSEEEECCCGGGHH-HHH
T ss_pred             EEEEEECchHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHHHcCCCceeCCHHHHhcCCCCCEEEEcCCCHHHH-HHH
Confidence            4899999999999999999875 67766 68999887654 3444652  457888885  899999997653222 233


Q ss_pred             HhccCCCeEE
Q psy4626         151 MDKMKNGCVV  160 (542)
Q Consensus       151 l~~mk~Gail  160 (542)
                      ...++.|.-+
T Consensus        85 ~~al~~gk~v   94 (330)
T 3e9m_A           85 KLALSQGKPV   94 (330)
T ss_dssp             HHHHHTTCCE
T ss_pred             HHHHHCCCeE
Confidence            4456666533

>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}

Probab=95.65  E-value=0.03  Score=55.42  Aligned_cols=69  Identities=25%  Similarity=0.351  Sum_probs=49.2

Q ss_pred             cccCcEEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhc-CC--ce-----eeCHH---HH-------hcCCc
Q psy4626          74 MFGGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACM-DG--FS-----VVKLN---EV-------IRTVD  134 (542)
Q Consensus        74 ~l~GktVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~-~G--~~-----v~~l~---e~-------l~~aD  134 (542)
                      .+.||+++|.|. |-||+.+|+.|...|++|+++++++.+..+... .+  +.     +.+.+   ++       +...|
T Consensus        26 ~l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD  105 (277)
T 3gvc_A           26 DLAGKVAIVTGAGAGIGLAVARRLADEGCHVLCADIDGDAADAAATKIGCGAAACRVDVSDEQQIIAMVDACVAAFGGVD  105 (277)
T ss_dssp             -CTTCEEEETTTTSTHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHCSSCEEEECCTTCHHHHHHHHHHHHHHHSSCC
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCcceEEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence            478999999997 579999999999999999999998876543221 12  11     12222   22       24789


Q ss_pred             EEEEcCCC
Q psy4626         135 IVVTATGN  142 (542)
Q Consensus       135 vVi~atG~  142 (542)
                      ++|.+.|.
T Consensus       106 ~lvnnAg~  113 (277)
T 3gvc_A          106 KLVANAGV  113 (277)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCCC
Confidence            99998763

>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}

Probab=95.65  E-value=0.053  Score=53.41  Aligned_cols=38  Identities=18%  Similarity=0.348  Sum_probs=33.6

Q ss_pred             ccccCcEEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCc
Q psy4626          73 VMFGGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDP  110 (542)
Q Consensus        73 ~~l~GktVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp  110 (542)
                      ..+.||+++|.|. |-||+.+|+.|...|++|++++.++
T Consensus        27 ~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~   65 (271)
T 3v2g_A           27 ISLAGKTAFVTGGSRGIGAAIAKRLALEGAAVALTYVNA   65 (271)
T ss_dssp             TCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCC
Confidence            3578999999998 5799999999999999999987655

>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum}

Probab=95.65  E-value=0.041  Score=59.34  Aligned_cols=95  Identities=17%  Similarity=0.153  Sum_probs=61.6

Q ss_pred             chhhhHHHHhHHHHHHHHHHHHHhhcCcccc-CcEEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCcee
Q psy4626          46 DSVTKTKFDNLYMCRESIIDSLKRSTDVMFG-GKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV  123 (542)
Q Consensus        46 ~s~~K~~fd~~~g~~~s~~~ai~r~~~~~l~-GktVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v  123 (542)
                      ...++..|..+.......+....+....... +++|+|+|. |.||+.+++.|...|.+|+++++++.+.....-+.  .
T Consensus       115 ~~~L~~~f~~R~~~l~~~l~~~~~~~~~~~~k~m~VLVTGatG~IG~~l~~~L~~~G~~V~~l~R~~~~~~~v~~d~--~  192 (516)
T 3oh8_A          115 ASTLTGMFAYRQTQLIEDLKFLSRTSTLFDGSPLTVAITGSRGLVGRALTAQLQTGGHEVIQLVRKEPKPGKRFWDP--L  192 (516)
T ss_dssp             GGGTHHHHHHHHHHHHHHHHHHHHHTTSSCCCCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSSCCTTCEECCT--T
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCccceeecc--c
Confidence            5567777766654443333332222222234 789999995 99999999999999999999998876432100000  0


Q ss_pred             eCHHHHhcCCcEEEEcCCC
Q psy4626         124 VKLNEVIRTVDIVVTATGN  142 (542)
Q Consensus       124 ~~l~e~l~~aDvVi~atG~  142 (542)
                      ....+++.++|+||.+.|.
T Consensus       193 ~~~~~~l~~~D~Vih~A~~  211 (516)
T 3oh8_A          193 NPASDLLDGADVLVHLAGE  211 (516)
T ss_dssp             SCCTTTTTTCSEEEECCCC
T ss_pred             chhHHhcCCCCEEEECCCC
Confidence            1224567899999998764

>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A

Probab=95.65  E-value=0.025  Score=55.45  Aligned_cols=69  Identities=14%  Similarity=0.157  Sum_probs=47.0

Q ss_pred             cccCcEEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCH---HHHh-------cCCcEEEEcCCC
Q psy4626          74 MFGGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKL---NEVI-------RTVDIVVTATGN  142 (542)
Q Consensus        74 ~l~GktVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l---~e~l-------~~aDvVi~atG~  142 (542)
                      .+.||+++|.|. |-||+.+++.|...|++|+++++++.+.........++.+.   ++++       ...|++|.+.|.
T Consensus         5 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~iD~lv~~Ag~   84 (264)
T 2dtx_A            5 DLRDKVVIVTGASMGIGRAIAERFVDEGSKVIDLSIHDPGEAKYDHIECDVTNPDQVKASIDHIFKEYGSISVLVNNAGI   84 (264)
T ss_dssp             GGTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESSCCCSCSSEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEecCcccCCceEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence            367999999997 68999999999999999999998765311000000112222   2222       379999998763

>1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1

Probab=95.62  E-value=0.009  Score=60.94  Aligned_cols=84  Identities=18%  Similarity=0.190  Sum_probs=56.5

Q ss_pred             cEEEEEcCChhHHHHHHHHH--hCCCE-EEEEeCCchh-h-hhhhcCCcee--eCHHHHh-----cCCcEEEEcCCCccc
Q psy4626          78 KQVVLCGYGEVGKGCCQSLK--GLGCV-IYITEIDPIC-A-LQACMDGFSV--VKLNEVI-----RTVDIVVTATGNKNV  145 (542)
Q Consensus        78 ktVvViG~G~IG~~vA~~l~--~~Ga~-Viv~d~dp~r-~-~~A~~~G~~v--~~l~e~l-----~~aDvVi~atG~~~l  145 (542)
                      -+|+|+|+|++|+..++.+.  .-+++ +.++|++|.+ . ..+...|...  .+.++++     .+.|+|++|+++..-
T Consensus         5 irVaIIG~G~iG~~~~~~l~~~~~~~elvav~d~~~~~~~~~~a~~~g~~~~~~~~e~ll~~~~~~~iDvV~~atp~~~h   84 (312)
T 1nvm_B            5 LKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRMGVTTTYAGVEGLIKLPEFADIDFVFDATSASAH   84 (312)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHHTTCCEESSHHHHHHHSGGGGGEEEEEECSCHHHH
T ss_pred             CEEEEEcCcHHHHHHHHHHHhhCcCeEEEEEEeCChhhhHHHHHHHcCCCcccCCHHHHHhccCCCCCcEEEECCChHHH
Confidence            48999999999999999884  35675 5568998876 3 3345566643  3445654     468999999984321


Q ss_pred             CCHHHHhccCC--CeEEEe
Q psy4626         146 VTREHMDKMKN--GCVVCN  162 (542)
Q Consensus       146 I~~e~l~~mk~--Gailvn  162 (542)
                      . .-....++.  |..++.
T Consensus        85 ~-~~a~~al~a~~Gk~Vi~  102 (312)
T 1nvm_B           85 V-QNEALLRQAKPGIRLID  102 (312)
T ss_dssp             H-HHHHHHHHHCTTCEEEE
T ss_pred             H-HHHHHHHHhCCCCEEEE
Confidence            1 223444555  887775

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=95.62  E-value=0.01  Score=58.45  Aligned_cols=37  Identities=24%  Similarity=0.419  Sum_probs=33.7

Q ss_pred             cccCcEEEEEcCChhHHHHHHHHHhCCC-EEEEEeCCc
Q psy4626          74 MFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDP  110 (542)
Q Consensus        74 ~l~GktVvViG~G~IG~~vA~~l~~~Ga-~Viv~d~dp  110 (542)
                      .+.+++|+|+|+|.+|..++..|...|+ +++++|.|.
T Consensus        25 ~l~~~~VlvvG~GglG~~va~~La~~Gvg~i~lvD~d~   62 (251)
T 1zud_1           25 KLLDSQVLIIGLGGLGTPAALYLAGAGVGTLVLADDDD   62 (251)
T ss_dssp             HHHTCEEEEECCSTTHHHHHHHHHHTTCSEEEEECCCB
T ss_pred             HHhcCcEEEEccCHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence            4678899999999999999999999998 899998775

>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8

Probab=95.60  E-value=0.024  Score=50.84  Aligned_cols=87  Identities=16%  Similarity=0.198  Sum_probs=58.8

Q ss_pred             cccCcEEEEEcC----ChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceee-CHHHHhcCCcEEEEcCCCcccCC-
Q psy4626          74 MFGGKQVVLCGY----GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVV-KLNEVIRTVDIVVTATGNKNVVT-  147 (542)
Q Consensus        74 ~l~GktVvViG~----G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~-~l~e~l~~aDvVi~atG~~~lI~-  147 (542)
                      ...-++|+|+|.    |.+|..+++.++..|.+|+.++  |.+.   .-.|..+. ++.++...+|+++.++....... 
T Consensus        11 l~~p~~IavIGaS~~~g~~G~~~~~~L~~~G~~V~~vn--p~~~---~i~G~~~~~s~~el~~~vDlvii~vp~~~v~~v   85 (138)
T 1y81_A           11 SKEFRKIALVGASKNPAKYGNIILKDLLSKGFEVLPVN--PNYD---EIEGLKCYRSVRELPKDVDVIVFVVPPKVGLQV   85 (138)
T ss_dssp             ---CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEEC--TTCS---EETTEECBSSGGGSCTTCCEEEECSCHHHHHHH
T ss_pred             ccCCCeEEEEeecCCCCCHHHHHHHHHHHCCCEEEEeC--CCCC---eECCeeecCCHHHhCCCCCEEEEEeCHHHHHHH
Confidence            345679999999    9999999999999999855554  5431   22576654 67787788999999876322211 


Q ss_pred             -HHHHhccCCCeEEEeccCC
Q psy4626         148 -REHMDKMKNGCVVCNMGHS  166 (542)
Q Consensus       148 -~e~l~~mk~GailvnvG~g  166 (542)
                       .+..+ ...+++++..+..
T Consensus        86 ~~~~~~-~g~~~i~~~~~~~  104 (138)
T 1y81_A           86 AKEAVE-AGFKKLWFQPGAE  104 (138)
T ss_dssp             HHHHHH-TTCCEEEECTTSC
T ss_pred             HHHHHH-cCCCEEEEcCccH
Confidence             12233 5567777777654

>2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A*

Probab=95.60  E-value=0.014  Score=56.81  Aligned_cols=38  Identities=18%  Similarity=0.273  Sum_probs=34.3

Q ss_pred             cccCcEEEEEcC---ChhHHHHHHHHHhCCCEEEEEeCCch
Q psy4626          74 MFGGKQVVLCGY---GEVGKGCCQSLKGLGCVIYITEIDPI  111 (542)
Q Consensus        74 ~l~GktVvViG~---G~IG~~vA~~l~~~Ga~Viv~d~dp~  111 (542)
                      .+.||+++|.|.   |-||+.+++.|...|++|+++++++.
T Consensus         5 ~l~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~   45 (261)
T 2wyu_A            5 DLSGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAER   45 (261)
T ss_dssp             CCTTCEEEEESCCSSSSHHHHHHHHHHHHTCEEEEEESCGG
T ss_pred             CCCCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCCHH
Confidence            467999999998   58999999999999999999998874

>3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V}

Probab=95.59  E-value=0.016  Score=58.85  Aligned_cols=83  Identities=13%  Similarity=0.101  Sum_probs=57.0

Q ss_pred             cEEEEEcCChhHHHHHHHHHhC-CCEEE-EEeCCchhhhh-hhcCCce--eeCHHHHhc--CCcEEEEcCCCcccCCHHH
Q psy4626          78 KQVVLCGYGEVGKGCCQSLKGL-GCVIY-ITEIDPICALQ-ACMDGFS--VVKLNEVIR--TVDIVVTATGNKNVVTREH  150 (542)
Q Consensus        78 ktVvViG~G~IG~~vA~~l~~~-Ga~Vi-v~d~dp~r~~~-A~~~G~~--v~~l~e~l~--~aDvVi~atG~~~lI~~e~  150 (542)
                      .+++|||+|.||...+..++.. +++++ ++|+++.++.. +...|..  +.++++++.  ++|+|+.|+.+..-. ...
T Consensus         6 ~rigiiG~G~ig~~~~~~l~~~~~~~~~av~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~-~~~   84 (329)
T 3evn_A            6 VRYGVVSTAKVAPRFIEGVRLAGNGEVVAVSSRTLESAQAFANKYHLPKAYDKLEDMLADESIDVIYVATINQDHY-KVA   84 (329)
T ss_dssp             EEEEEEBCCTTHHHHHHHHHHHCSEEEEEEECSCSSTTCC---CCCCSCEESCHHHHHTCTTCCEEEECSCGGGHH-HHH
T ss_pred             eEEEEEechHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEECCCcHHHH-HHH
Confidence            4899999999999988888765 56655 67999887653 3344553  457888886  799999997643222 234


Q ss_pred             HhccCCCeEEE
Q psy4626         151 MDKMKNGCVVC  161 (542)
Q Consensus       151 l~~mk~Gailv  161 (542)
                      ...++.|.-++
T Consensus        85 ~~al~aGk~Vl   95 (329)
T 3evn_A           85 KAALLAGKHVL   95 (329)
T ss_dssp             HHHHHTTCEEE
T ss_pred             HHHHHCCCeEE
Confidence            55566665444

>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A*

Probab=95.56  E-value=0.02  Score=58.40  Aligned_cols=82  Identities=16%  Similarity=0.194  Sum_probs=57.8

Q ss_pred             EEEEEcCChhHHHHHHHHH-h-CCCEEE-EEeCCchhhhh-hhcCC--ce-eeCHHHHhc--CCcEEEEcCCCcccCCHH
Q psy4626          79 QVVLCGYGEVGKGCCQSLK-G-LGCVIY-ITEIDPICALQ-ACMDG--FS-VVKLNEVIR--TVDIVVTATGNKNVVTRE  149 (542)
Q Consensus        79 tVvViG~G~IG~~vA~~l~-~-~Ga~Vi-v~d~dp~r~~~-A~~~G--~~-v~~l~e~l~--~aDvVi~atG~~~lI~~e  149 (542)
                      +|+|||+|.+|...+..++ . -+++++ ++|+++.++.. +...|  .. +.++++++.  ++|+|+.|+.+..-. ..
T Consensus         4 rigiIG~G~~g~~~~~~l~~~~~~~~l~av~d~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~-~~   82 (344)
T 3mz0_A            4 RIGVIGTGAIGKEHINRITNKLSGAEIVAVTDVNQEAAQKVVEQYQLNATVYPNDDSLLADENVDAVLVTSWGPAHE-SS   82 (344)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTCSSEEEEEEECSSHHHHHHHHHHTTCCCEEESSHHHHHHCTTCCEEEECSCGGGHH-HH
T ss_pred             EEEEECccHHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCCCeeeCCHHHHhcCCCCCEEEECCCchhHH-HH
Confidence            7999999999999999888 4 467765 78999887654 34456  33 457888885  499999998543222 23


Q ss_pred             HHhccCCCeEEE
Q psy4626         150 HMDKMKNGCVVC  161 (542)
Q Consensus       150 ~l~~mk~Gailv  161 (542)
                      ....++.|.-++
T Consensus        83 ~~~al~~Gk~vl   94 (344)
T 3mz0_A           83 VLKAIKAQKYVF   94 (344)
T ss_dssp             HHHHHHTTCEEE
T ss_pred             HHHHHHCCCcEE
Confidence            455566666444

>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*

Probab=95.55  E-value=0.029  Score=55.25  Aligned_cols=39  Identities=18%  Similarity=0.359  Sum_probs=34.5

Q ss_pred             cccCcEEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCchh
Q psy4626          74 MFGGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPIC  112 (542)
Q Consensus        74 ~l~GktVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp~r  112 (542)
                      .+.||+++|.|. |-||+.+|+.|...|++|+++++++.+
T Consensus        26 ~~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~   65 (283)
T 1g0o_A           26 SLEGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTE   65 (283)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchH
Confidence            367999999997 679999999999999999999988653

>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A

Probab=95.54  E-value=0.011  Score=60.20  Aligned_cols=83  Identities=18%  Similarity=0.358  Sum_probs=58.5

Q ss_pred             CcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeC--------HHHH-hcCCcEEEEcCCCc--cc
Q psy4626          77 GKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVK--------LNEV-IRTVDIVVTATGNK--NV  145 (542)
Q Consensus        77 GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~--------l~e~-l~~aDvVi~atG~~--~l  145 (542)
                      .+.++|+|+|.+|+.+++.|...|. |+++|.||.+.. ....|+.++.        ++++ +.++|.++.++++.  .+
T Consensus       115 ~~~viI~G~G~~g~~l~~~L~~~g~-v~vid~~~~~~~-~~~~~~~~i~gd~~~~~~L~~a~i~~a~~vi~~~~~d~~n~  192 (336)
T 1lnq_A          115 SRHVVICGWSESTLECLRELRGSEV-FVLAEDENVRKK-VLRSGANFVHGDPTRVSDLEKANVRGARAVIVDLESDSETI  192 (336)
T ss_dssp             -CEEEEESCCHHHHHHHTTGGGSCE-EEEESCGGGHHH-HHHTTCEEEESCTTSHHHHHHTCSTTEEEEEECCSSHHHHH
T ss_pred             cCCEEEECCcHHHHHHHHHHHhCCc-EEEEeCChhhhh-HHhCCcEEEEeCCCCHHHHHhcChhhccEEEEcCCccHHHH
Confidence            4589999999999999999999999 999999998876 5556666432        2233 57899999988753  11


Q ss_pred             CCHHHHhccCCCeEEE
Q psy4626         146 VTREHMDKMKNGCVVC  161 (542)
Q Consensus       146 I~~e~l~~mk~Gailv  161 (542)
                      ......+.+.+...++
T Consensus       193 ~~~~~ar~~~~~~~ii  208 (336)
T 1lnq_A          193 HCILGIRKIDESVRII  208 (336)
T ss_dssp             HHHHHHHTTCTTSEEE
T ss_pred             HHHHHHHHHCCCCeEE
Confidence            2123445555554443

>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti}

Probab=95.54  E-value=0.022  Score=56.49  Aligned_cols=42  Identities=26%  Similarity=0.268  Sum_probs=33.6

Q ss_pred             ccccCcEEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCchhhh
Q psy4626          73 VMFGGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICAL  114 (542)
Q Consensus        73 ~~l~GktVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~  114 (542)
                      ..+.||+++|.|. |-||+.+|+.|...|++|+++++++.+..
T Consensus        29 ~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~   71 (281)
T 4dry_A           29 GSGEGRIALVTGGGTGVGRGIAQALSAEGYSVVITGRRPDVLD   71 (281)
T ss_dssp             -----CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHH
Confidence            3578999999997 67999999999999999999999886543

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=95.54  E-value=0.025  Score=58.35  Aligned_cols=86  Identities=16%  Similarity=0.248  Sum_probs=60.3

Q ss_pred             CcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCc----eeeC---HHHHhcCCcEEEEcCCCcccCCHH
Q psy4626          77 GKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGF----SVVK---LNEVIRTVDIVVTATGNKNVVTRE  149 (542)
Q Consensus        77 GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~----~v~~---l~e~l~~aDvVi~atG~~~lI~~e  149 (542)
                      ..+|+|+|+|.+|+.+++.|.. ..+|.++|+++.++..+....-    ++.+   +.++++++|+||.|++..  .+..
T Consensus        16 ~mkilvlGaG~vG~~~~~~L~~-~~~v~~~~~~~~~~~~~~~~~~~~~~d~~d~~~l~~~~~~~DvVi~~~p~~--~~~~   92 (365)
T 3abi_A           16 HMKVLILGAGNIGRAIAWDLKD-EFDVYIGDVNNENLEKVKEFATPLKVDASNFDKLVEVMKEFELVIGALPGF--LGFK   92 (365)
T ss_dssp             CCEEEEECCSHHHHHHHHHHTT-TSEEEEEESCHHHHHHHTTTSEEEECCTTCHHHHHHHHTTCSEEEECCCGG--GHHH
T ss_pred             ccEEEEECCCHHHHHHHHHHhc-CCCeEEEEcCHHHHHHHhccCCcEEEecCCHHHHHHHHhCCCEEEEecCCc--ccch
Confidence            3479999999999999999964 5799999999877665433221    1222   345678999999997642  3323


Q ss_pred             HH-hccCCCeEEEeccC
Q psy4626         150 HM-DKMKNGCVVCNMGH  165 (542)
Q Consensus       150 ~l-~~mk~GailvnvG~  165 (542)
                      .. ..++.|.-+++++-
T Consensus        93 v~~~~~~~g~~yvD~s~  109 (365)
T 3abi_A           93 SIKAAIKSKVDMVDVSF  109 (365)
T ss_dssp             HHHHHHHHTCEEEECCC
T ss_pred             HHHHHHhcCcceEeeec
Confidence            32 34577888888763

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=95.54  E-value=0.0094  Score=54.68  Aligned_cols=32  Identities=19%  Similarity=0.335  Sum_probs=30.0

Q ss_pred             EEEEEcCChhHHHHHHHHHhCCCEEEEEeCCc
Q psy4626          79 QVVLCGYGEVGKGCCQSLKGLGCVIYITEIDP  110 (542)
Q Consensus        79 tVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp  110 (542)
                      .|+|||+||.|+.+|..|+..|.+|+++|.++
T Consensus         4 dV~IIGaGpaGL~aA~~La~~G~~V~v~Ek~~   35 (336)
T 3kkj_A            4 PIAIIGTGIAGLSAAQALTAAGHQVHLFDKSR   35 (336)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCCEEEEECCC
Confidence            49999999999999999999999999999765

>3uce_A Dehydrogenase; rossmann fold, oxidoreductase; HET: NDP; 1.80A {Vibrio vulnificus}

Probab=95.51  E-value=0.02  Score=54.33  Aligned_cols=83  Identities=13%  Similarity=0.169  Sum_probs=57.5

Q ss_pred             ccCcEEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCH---HHH---hcCCcEEEEcCCCcc---
Q psy4626          75 FGGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKL---NEV---IRTVDIVVTATGNKN---  144 (542)
Q Consensus        75 l~GktVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l---~e~---l~~aDvVi~atG~~~---  144 (542)
                      +.||+++|.|. |-||+.+|+.|...|++|+++++++.         .++.+.   +++   +...|++|.+.|...   
T Consensus         4 ~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~---------~D~~~~~~v~~~~~~~g~id~lv~nAg~~~~~~   74 (223)
T 3uce_A            4 SDKTVYVVLGGTSGIGAELAKQLESEHTIVHVASRQTG---------LDISDEKSVYHYFETIGAFDHLIVTAGSYAPAG   74 (223)
T ss_dssp             -CCEEEEEETTTSHHHHHHHHHHCSTTEEEEEESGGGT---------CCTTCHHHHHHHHHHHCSEEEEEECCCCCCCCS
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEecCCcc---------cCCCCHHHHHHHHHHhCCCCEEEECCCCCCCCC
Confidence            56899999998 67999999999999999999986543         222222   222   357899999877321   


Q ss_pred             -c--CC-------------------HHHHhccCCCeEEEeccCC
Q psy4626         145 -V--VT-------------------REHMDKMKNGCVVCNMGHS  166 (542)
Q Consensus       145 -l--I~-------------------~e~l~~mk~GailvnvG~g  166 (542)
                       +  .+                   ...+..|++++.++++++.
T Consensus        75 ~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~~sS~  118 (223)
T 3uce_A           75 KVVDVEVTQAKYAFDTKFWGAVLAAKHGARYLKQGGSITLTSGM  118 (223)
T ss_dssp             CTTTSCHHHHHHHHHHHHHHHHHHHHHHGGGEEEEEEEEEECCG
T ss_pred             CcccCCHHHHHhhheeeeeeHHHHHHHHHhhccCCeEEEEecch
Confidence             1  11                   2234566677888888764

>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2

Probab=95.51  E-value=0.021  Score=55.95  Aligned_cols=41  Identities=12%  Similarity=0.293  Sum_probs=36.3

Q ss_pred             ccCcEEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCchhhhh
Q psy4626          75 FGGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQ  115 (542)
Q Consensus        75 l~GktVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~  115 (542)
                      +.|++++|.|. |-||+.+++.|...|++|+++++++.+..+
T Consensus         4 l~~k~vlITGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~   45 (263)
T 2a4k_A            4 LSGKTILVTGAASGIGRAALDLFAREGASLVAVDREERLLAE   45 (263)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence            57899999998 689999999999999999999998876543

>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2

Probab=95.50  E-value=0.031  Score=54.49  Aligned_cols=40  Identities=18%  Similarity=0.317  Sum_probs=35.7

Q ss_pred             cccCcEEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCchhh
Q psy4626          74 MFGGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICA  113 (542)
Q Consensus        74 ~l~GktVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp~r~  113 (542)
                      ++.|++++|.|. |.||+.+++.|...|++|+++++++.+.
T Consensus         4 m~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~   44 (267)
T 2gdz_A            4 MVNGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAG   44 (267)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHH
T ss_pred             ccCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEEECCHHHH
Confidence            467999999998 6899999999999999999999987654

>1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*

Probab=95.50  E-value=0.04  Score=52.19  Aligned_cols=66  Identities=18%  Similarity=0.110  Sum_probs=48.0

Q ss_pred             cCcEEEEEcC-ChhHHHHHHHHHhC--CCEEEEEeCCchhhhhhhcCCcee-----eC---HHHHhcCCcEEEEcCCC
Q psy4626          76 GGKQVVLCGY-GEVGKGCCQSLKGL--GCVIYITEIDPICALQACMDGFSV-----VK---LNEVIRTVDIVVTATGN  142 (542)
Q Consensus        76 ~GktVvViG~-G~IG~~vA~~l~~~--Ga~Viv~d~dp~r~~~A~~~G~~v-----~~---l~e~l~~aDvVi~atG~  142 (542)
                      .+++|+|+|. |.||+.+++.|...  |.+|+++++++.+.... ..+..+     .+   ++++++++|+||.+.|.
T Consensus         3 ~~~~ilVtGasG~iG~~l~~~l~~~~~g~~V~~~~r~~~~~~~~-~~~~~~~~~D~~d~~~~~~~~~~~d~vi~~a~~   79 (253)
T 1xq6_A            3 NLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKI-GGEADVFIGDITDADSINPAFQGIDALVILTSA   79 (253)
T ss_dssp             SCCEEEEESTTSHHHHHHHHHHHHTTTTCEEEEEESCHHHHHHT-TCCTTEEECCTTSHHHHHHHHTTCSEEEECCCC
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHhcCCCcEEEEEEcCCCchhhc-CCCeeEEEecCCCHHHHHHHHcCCCEEEEeccc
Confidence            5789999995 99999999999998  89999999987654322 122221     12   23456788888887663

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*

Probab=95.50  E-value=0.038  Score=56.26  Aligned_cols=88  Identities=20%  Similarity=0.166  Sum_probs=59.6

Q ss_pred             CcEEEEEcCChhHHHHHHHHHhCCC--EEEEEeCCchhhhh-hhc--C-------Ccee-eCHHHHhcCCcEEEEcCCCc
Q psy4626          77 GKQVVLCGYGEVGKGCCQSLKGLGC--VIYITEIDPICALQ-ACM--D-------GFSV-VKLNEVIRTVDIVVTATGNK  143 (542)
Q Consensus        77 GktVvViG~G~IG~~vA~~l~~~Ga--~Viv~d~dp~r~~~-A~~--~-------G~~v-~~l~e~l~~aDvVi~atG~~  143 (542)
                      ..+|+|+|.|.+|..++..+...|.  +|..+|+++.++.. +..  .       ...+ .+..+++++||+||.+.|.+
T Consensus         6 ~~KI~IIGaG~vG~~la~~l~~~~~~~ei~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~~~~~a~~~aDvVvi~ag~~   85 (317)
T 3d0o_A            6 GNKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKHATPYSPTTVRVKAGEYSDCHDADLVVICAGAA   85 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCSCSEEEEECSCHHHHHHHHHHHHHHGGGSSSCCEEEECCGGGGTTCSEEEECCCCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHhhhhhhhHHhhhhhcCCCeEEEeCCHHHhCCCCEEEECCCCC
Confidence            4689999999999999998887774  89999999865431 111  1       1111 13456789999999988754


Q ss_pred             ccCC-----------------HHHHhccCCCeEEEecc
Q psy4626         144 NVVT-----------------REHMDKMKNGCVVCNMG  164 (542)
Q Consensus       144 ~lI~-----------------~e~l~~mk~GailvnvG  164 (542)
                      .--.                 .+.+....+++++++++
T Consensus        86 ~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~t  123 (317)
T 3d0o_A           86 QKPGETRLDLVSKNLKIFKSIVGEVMASKFDGIFLVAT  123 (317)
T ss_dssp             CCTTCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECS
T ss_pred             CCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Confidence            2110                 12333446888888865

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=95.49  E-value=0.031  Score=56.63  Aligned_cols=65  Identities=18%  Similarity=0.199  Sum_probs=48.6

Q ss_pred             cEEEEEcCChhHHHHHHHHHhCCC-EEEEEeCCchhhhh-hh--cCC---------cee-eCHHHHhcCCcEEEEcCCCc
Q psy4626          78 KQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQ-AC--MDG---------FSV-VKLNEVIRTVDIVVTATGNK  143 (542)
Q Consensus        78 ktVvViG~G~IG~~vA~~l~~~Ga-~Viv~d~dp~r~~~-A~--~~G---------~~v-~~l~e~l~~aDvVi~atG~~  143 (542)
                      .+|+|+|.|.+|..++..+...|. +|..+|+++.++.. +.  ..+         ... .+. +++++||+||.+.|.+
T Consensus         3 ~kI~VIGaG~vG~~~a~~la~~g~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d~-~a~~~aD~Vi~a~g~p   81 (309)
T 1ur5_A            3 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNY-ADTANSDVIVVTSGAP   81 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCG-GGGTTCSEEEECCCC-
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCeEEEEeCCccHHHHHHHhHHHhHhhcCCCeEEEECCCH-HHHCCCCEEEEcCCCC
Confidence            489999999999999999999896 99999999865431 11  111         112 344 6789999999998764

>1pvv_A Otcase, ornithine carbamoyltransferase; dodecamer; 1.87A {Pyrococcus furiosus} SCOP: c.78.1.1 c.78.1.1 PDB: 1a1s_A

Probab=95.49  E-value=0.15  Score=52.07  Aligned_cols=100  Identities=16%  Similarity=0.193  Sum_probs=72.7

Q ss_pred             cccCcEEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCchhh-----h----hhhcCCce---eeCHHHHhcCCcEEEEcC
Q psy4626          74 MFGGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICA-----L----QACMDGFS---VVKLNEVIRTVDIVVTAT  140 (542)
Q Consensus        74 ~l~GktVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp~r~-----~----~A~~~G~~---v~~l~e~l~~aDvVi~at  140 (542)
                      .+.|.+|+++|- +++....+..+..+|++|.++-+.....     .    .|...|..   +.+++++++++|+|.+..
T Consensus       152 ~l~gl~va~vGD~~rva~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~~~~~~~d~~eav~~aDvvy~~~  231 (315)
T 1pvv_A          152 TIKGVKVVYVGDGNNVAHSLMIAGTKLGADVVVATPEGYEPDEKVIKWAEQNAAESGGSFELLHDPVKAVKDADVIYTDV  231 (315)
T ss_dssp             CCTTCEEEEESCCCHHHHHHHHHHHHTTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCEEEEESCHHHHTTTCSEEEECC
T ss_pred             CcCCcEEEEECCCcchHHHHHHHHHHCCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEeCHHHHhCCCCEEEEcc
Confidence            478999999998 6888999999999999999985432211     1    12244533   356889999999999943


Q ss_pred             ----C------------CcccCCHHHHhccCCCeEEEeccCC--CcccChH
Q psy4626         141 ----G------------NKNVVTREHMDKMKNGCVVCNMGHS--NTEIDVN  173 (542)
Q Consensus       141 ----G------------~~~lI~~e~l~~mk~GailvnvG~g--~~eid~~  173 (542)
                          |            ...-++.+.++.+|+++++.-++-.  ..||+-+
T Consensus       232 w~smg~~~~~~~~~~~~~~y~v~~ell~~a~~~ai~mH~lP~~Rg~EI~~e  282 (315)
T 1pvv_A          232 WASMGQEAEAEERRKIFRPFQVNKDLVKHAKPDYMFMHCLPAHRGEEVTDD  282 (315)
T ss_dssp             CCCSSTTSSSSHHHHHHGGGCBCHHHHHTSCTTCEEEECSCCCBTTTBCHH
T ss_pred             eeccCcccchHHHHHHHHhcCCCHHHHhhcCCCcEEECCCCCCCCCccCHH
Confidence                2            1245678888889999999887764  3565544

>2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus}

Probab=95.48  E-value=0.033  Score=54.99  Aligned_cols=37  Identities=22%  Similarity=0.390  Sum_probs=34.0

Q ss_pred             ccCcEEEEEcC---ChhHHHHHHHHHhCCCEEEEEeCCch
Q psy4626          75 FGGKQVVLCGY---GEVGKGCCQSLKGLGCVIYITEIDPI  111 (542)
Q Consensus        75 l~GktVvViG~---G~IG~~vA~~l~~~Ga~Viv~d~dp~  111 (542)
                      +.||+++|.|.   |-||+.+|+.|...|++|+++++++.
T Consensus        19 l~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~   58 (285)
T 2p91_A           19 LEGKRALITGVANERSIAYGIAKSFHREGAQLAFTYATPK   58 (285)
T ss_dssp             TTTCEEEECCCSSTTSHHHHHHHHHHHTTCEEEEEESSGG
T ss_pred             cCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCCHH
Confidence            67999999998   58999999999999999999998874

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=95.47  E-value=0.035  Score=52.89  Aligned_cols=88  Identities=10%  Similarity=-0.002  Sum_probs=62.3

Q ss_pred             ccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhc----CCc----eee--CHHHHh---cCCcEEEEcCC
Q psy4626          75 FGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACM----DGF----SVV--KLNEVI---RTVDIVVTATG  141 (542)
Q Consensus        75 l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~----~G~----~v~--~l~e~l---~~aDvVi~atG  141 (542)
                      ..|++|+.+|+| .|......++. +.+|+.+|.++.....|..    .+.    .+.  +..+..   ...|+|+.+.+
T Consensus        90 ~~~~~vldiG~G-~G~~~~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~  167 (248)
T 2yvl_A           90 NKEKRVLEFGTG-SGALLAVLSEV-AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEVPEGIFHAAFVDVR  167 (248)
T ss_dssp             CTTCEEEEECCT-TSHHHHHHHHH-SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCCCTTCBSEEEECSS
T ss_pred             CCCCEEEEeCCC-ccHHHHHHHHh-CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcccCCCcccEEEECCc
Confidence            478999999999 68877777777 8899999999987655433    232    221  222222   35899999877


Q ss_pred             Cc-ccCCHHHHhccCCCeEEEeccC
Q psy4626         142 NK-NVVTREHMDKMKNGCVVCNMGH  165 (542)
Q Consensus       142 ~~-~lI~~e~l~~mk~GailvnvG~  165 (542)
                      .+ ..+ .+..+.|++|+.++....
T Consensus       168 ~~~~~l-~~~~~~L~~gG~l~~~~~  191 (248)
T 2yvl_A          168 EPWHYL-EKVHKSLMEGAPVGFLLP  191 (248)
T ss_dssp             CGGGGH-HHHHHHBCTTCEEEEEES
T ss_pred             CHHHHH-HHHHHHcCCCCEEEEEeC
Confidence            65 444 467888999998876554

>1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5

Probab=95.45  E-value=0.018  Score=57.91  Aligned_cols=83  Identities=13%  Similarity=0.115  Sum_probs=56.0

Q ss_pred             cEEEEEcCChhHHH-HHHHHHh-CCCEEE-EEeCCchhhhh-hhcCCcee-eCHHHHhcCCcEEEEcCCCcccCCHHHHh
Q psy4626          78 KQVVLCGYGEVGKG-CCQSLKG-LGCVIY-ITEIDPICALQ-ACMDGFSV-VKLNEVIRTVDIVVTATGNKNVVTREHMD  152 (542)
Q Consensus        78 ktVvViG~G~IG~~-vA~~l~~-~Ga~Vi-v~d~dp~r~~~-A~~~G~~v-~~l~e~l~~aDvVi~atG~~~lI~~e~l~  152 (542)
                      .+|+|+|+|.+|+. .+..++. -|++++ ++|+++.++.. +...|..+ .+.+++..++|+|+.|+.+..-. .....
T Consensus         6 ~~vgiiG~G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~~~g~~~~~~~~~l~~~~D~V~i~tp~~~h~-~~~~~   84 (319)
T 1tlt_A            6 LRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESWRIPYADSLSSLAASCDAVFVHSSTASHF-DVVST   84 (319)
T ss_dssp             EEEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHHTCCBCSSHHHHHTTCSEEEECSCTTHHH-HHHHH
T ss_pred             ceEEEECCCHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcCCCccCcHHHhhcCCCEEEEeCCchhHH-HHHHH
Confidence            48999999999986 8887765 467766 89999987653 33335443 34555557899999998643222 23445


Q ss_pred             ccCCCeEEE
Q psy4626         153 KMKNGCVVC  161 (542)
Q Consensus       153 ~mk~Gailv  161 (542)
                      .++.|.-++
T Consensus        85 al~~G~~v~   93 (319)
T 1tlt_A           85 LLNAGVHVC   93 (319)
T ss_dssp             HHHTTCEEE
T ss_pred             HHHcCCeEE
Confidence            667776433

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=95.45  E-value=0.045  Score=55.00  Aligned_cols=68  Identities=19%  Similarity=0.217  Sum_probs=49.1

Q ss_pred             ccCcEEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCchhhhh----hhc-------CCceee--C------HHHHhcCCc
Q psy4626          75 FGGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQ----ACM-------DGFSVV--K------LNEVIRTVD  134 (542)
Q Consensus        75 l~GktVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~----A~~-------~G~~v~--~------l~e~l~~aD  134 (542)
                      ..+++|+|+|. |.||+.+++.|...|.+|+++++++.....    ...       .++.++  +      +.++++++|
T Consensus        23 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d  102 (351)
T 3ruf_A           23 FSPKTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRDLTTCEQVMKGVD  102 (351)
T ss_dssp             HSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHTSCHHHHTTEEEEECCTTCHHHHHHHTTTCS
T ss_pred             CCCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhcCCC
Confidence            56899999996 999999999999999999999986542211    111       233322  2      235567899


Q ss_pred             EEEEcCCC
Q psy4626         135 IVVTATGN  142 (542)
Q Consensus       135 vVi~atG~  142 (542)
                      +||.+.|.
T Consensus       103 ~Vih~A~~  110 (351)
T 3ruf_A          103 HVLHQAAL  110 (351)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCcc
Confidence            99998763

>1vlv_A Otcase, ornithine carbamoyltransferase; TM1097, structural genomics, protein structure initiative, PSI, joint center for structu genomics; 2.25A {Thermotoga maritima} SCOP: c.78.1.1 c.78.1.1

Probab=95.43  E-value=0.15  Score=52.28  Aligned_cols=100  Identities=16%  Similarity=0.130  Sum_probs=72.4

Q ss_pred             cccCcEEEEEcCC--hhHHHHHHHHHhCCCEEEEEeCCchhh-----h----hhhcCCce---eeCHHHHhcCCcEEEEc
Q psy4626          74 MFGGKQVVLCGYG--EVGKGCCQSLKGLGCVIYITEIDPICA-----L----QACMDGFS---VVKLNEVIRTVDIVVTA  139 (542)
Q Consensus        74 ~l~GktVvViG~G--~IG~~vA~~l~~~Ga~Viv~d~dp~r~-----~----~A~~~G~~---v~~l~e~l~~aDvVi~a  139 (542)
                      .+.|.+|+++|-|  ++....+..+..+|++|.++-+.....     .    .|...|..   +.+++++++++|+|.+.
T Consensus       164 ~l~gl~va~vGD~~~rva~Sl~~~~~~~G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~~v~~~~d~~eav~~aDvvyt~  243 (325)
T 1vlv_A          164 RLKGVKVVFMGDTRNNVATSLMIACAKMGMNFVACGPEELKPRSDVFKRCQEIVKETDGSVSFTSNLEEALAGADVVYTD  243 (325)
T ss_dssp             CSTTCEEEEESCTTSHHHHHHHHHHHHTTCEEEEESCGGGCCCHHHHHHHHHHHHHHCCEEEEESCHHHHHTTCSEEEEC
T ss_pred             CcCCcEEEEECCCCcCcHHHHHHHHHHCCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEcCHHHHHccCCEEEec
Confidence            4789999999995  899999999999999999985432211     1    12244633   34688999999999994


Q ss_pred             CC----------------CcccCCHHHHhcc-CCCeEEEeccCC--CcccChH
Q psy4626         140 TG----------------NKNVVTREHMDKM-KNGCVVCNMGHS--NTEIDVN  173 (542)
Q Consensus       140 tG----------------~~~lI~~e~l~~m-k~GailvnvG~g--~~eid~~  173 (542)
                      .-                .+.-++.+.++.+ |+++++.-++-.  ..||+-+
T Consensus       244 ~w~smg~~~~~~~~~~~~~~y~v~~ell~~a~k~dai~mH~LP~~Rg~EI~~e  296 (325)
T 1vlv_A          244 VWASMGEEDKEKERMALLKPYQVNERVMEMTGKSETIFMHCLPAVKGQEVTYE  296 (325)
T ss_dssp             CCC----------CHHHHGGGCBCHHHHHTTCCTTCEEEECSCCCBTTTBCHH
T ss_pred             cccccccccchHhHHHHHhhcCCCHHHHHhccCCCeEEECCCCCCCCcccCHH
Confidence            31                1345677888889 999999887764  3455544

>1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=95.42  E-value=0.036  Score=55.36  Aligned_cols=40  Identities=23%  Similarity=0.339  Sum_probs=35.7

Q ss_pred             ccCcEEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCchhhh
Q psy4626          75 FGGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICAL  114 (542)
Q Consensus        75 l~GktVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~  114 (542)
                      +.||+++|.|. |-||+.+|+.|...|++|+++++++.+..
T Consensus        24 l~~k~vlVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~   64 (297)
T 1xhl_A           24 FSGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLE   64 (297)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence            67999999998 68999999999999999999999886543

>3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis}

Probab=95.42  E-value=0.025  Score=57.93  Aligned_cols=82  Identities=21%  Similarity=0.236  Sum_probs=56.2

Q ss_pred             cEEEEEcCChhHHH-HHHHHHhC-CCEEE-EEeCCchhhhhhhcCCce-eeCHHHHhc--CCcEEEEcCCCcccCCHHHH
Q psy4626          78 KQVVLCGYGEVGKG-CCQSLKGL-GCVIY-ITEIDPICALQACMDGFS-VVKLNEVIR--TVDIVVTATGNKNVVTREHM  151 (542)
Q Consensus        78 ktVvViG~G~IG~~-vA~~l~~~-Ga~Vi-v~d~dp~r~~~A~~~G~~-v~~l~e~l~--~aDvVi~atG~~~lI~~e~l  151 (542)
                      -+|+|||+|.+|+. .+..++.. +++|+ ++|+++.++. +...+.. +.++++++.  +.|+|+.||.+..-. .-..
T Consensus         8 ~rvgiiG~G~~g~~~~~~~~~~~~~~~l~av~d~~~~~~~-~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H~-~~~~   85 (352)
T 3kux_A            8 IKVGLLGYGYASKTFHAPLIMGTPGLELAGVSSSDASKVH-ADWPAIPVVSDPQMLFNDPSIDLIVIPTPNDTHF-PLAQ   85 (352)
T ss_dssp             EEEEEECCSHHHHHTHHHHHHTSTTEEEEEEECSCHHHHH-TTCSSCCEESCHHHHHHCSSCCEEEECSCTTTHH-HHHH
T ss_pred             ceEEEECCCHHHHHHHHHHHhhCCCcEEEEEECCCHHHHH-hhCCCCceECCHHHHhcCCCCCEEEEeCChHHHH-HHHH
Confidence            48999999999986 77777766 77765 7899988765 2233443 457888884  599999997542111 2345


Q ss_pred             hccCCCeEEE
Q psy4626         152 DKMKNGCVVC  161 (542)
Q Consensus       152 ~~mk~Gailv  161 (542)
                      ..++.|.-++
T Consensus        86 ~al~aGkhV~   95 (352)
T 3kux_A           86 SALAAGKHVV   95 (352)
T ss_dssp             HHHHTTCEEE
T ss_pred             HHHHCCCcEE
Confidence            5667776443

>1pj3_A NAD-dependent malic enzyme, mitochondrial; oxidative decarboxylase, oxidoreductase; HET: NAD; 2.10A {Homo sapiens} SCOP: c.2.1.7 c.58.1.3 PDB: 1pj2_A* 1do8_A* 1pj4_A* 1qr6_A* 1efl_A* 1pjl_A* 1efk_A* 1gz4_A* 1gz3_A*

Probab=95.41  E-value=0.068  Score=58.37  Aligned_cols=123  Identities=11%  Similarity=0.140  Sum_probs=87.4

Q ss_pred             HhHHHHHHHHHHHHH---hhcCccccCcEEEEEcCChhHHHHHHHHHh----CCC-------EEEEEeCCch--------
Q psy4626          54 DNLYMCRESIIDSLK---RSTDVMFGGKQVVLCGYGEVGKGCCQSLKG----LGC-------VIYITEIDPI--------  111 (542)
Q Consensus        54 d~~~g~~~s~~~ai~---r~~~~~l~GktVvViG~G~IG~~vA~~l~~----~Ga-------~Viv~d~dp~--------  111 (542)
                      |...||+-.++.++.   +.++..+...++++.|+|.-|.++|..+..    .|+       +++++|..-.        
T Consensus       258 DDiqGTa~V~lAgllnAlki~gk~l~d~riv~~GAGaAgigia~ll~~~m~~~Gl~~eeA~~~i~~~D~~Gli~~~r~~~  337 (564)
T 1pj3_A          258 DDIQGTAAVALAGLLAAQKVISKPISEHKILFLGAGEAALGIANLIVMSMVENGLSEQEAQKKIWMFDKYGLLVKGRKAK  337 (564)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCCCGGGCCEEEECCSHHHHHHHHHHHHHHHHTTCCHHHHHHTEEEEETTEECBTTCSSC
T ss_pred             CCCchHHHHHHHHHHHHHHHhCCcHhHcEEEEeCCCHHHHHHHHHHHHHHHHcCCChHHhhCcEEEEeCCCeEECCCccc
Confidence            566788755555443   345677888999999999999999999886    794       6888886331        


Q ss_pred             ----hhhhhhcCCc-eeeCHHHHhc--CCcEEEEcCCCcccCCHHHHhccC---CCeEEEeccCCCc--ccChHhhc
Q psy4626         112 ----CALQACMDGF-SVVKLNEVIR--TVDIVVTATGNKNVVTREHMDKMK---NGCVVCNMGHSNT--EIDVNSLR  176 (542)
Q Consensus       112 ----r~~~A~~~G~-~v~~l~e~l~--~aDvVi~atG~~~lI~~e~l~~mk---~GailvnvG~g~~--eid~~aL~  176 (542)
                          +...|..... ...++.++++  ++|++|-+++.+++++++.++.|.   +.-+|.-.+....  |+..+...
T Consensus       338 l~~~k~~~A~~~~~~~~~~L~eav~~vkp~vlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLSNPt~~aE~~pe~a~  414 (564)
T 1pj3_A          338 IDSYQEPFTHSAPESIPDTFEDAVNILKPSTIIGVAGAGRLFTPDVIRAMASINERPVIFALSNPTAQAECTAEEAY  414 (564)
T ss_dssp             CCTTTGGGCBCCCSSCCSSHHHHHHHHCCSEEEECCCSSCCSCHHHHHHHHHHCSSCEEEECCSSGGGCSCCHHHHH
T ss_pred             chHHHHHHHHhcCccccCCHHHHHhhcCCCEEEEeCCCCCCCCHHHHHHHHhcCCCCEEEECCCCCCccCcCHHHHH
Confidence                1112221110 0136888887  799999999878999999999997   5778877776543  77766443

>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens}

Probab=95.39  E-value=0.043  Score=53.26  Aligned_cols=41  Identities=20%  Similarity=0.442  Sum_probs=36.2

Q ss_pred             cccCcEEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCchhhh
Q psy4626          74 MFGGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICAL  114 (542)
Q Consensus        74 ~l~GktVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~  114 (542)
                      .+.||+++|.|. |-||+.+++.|...|++|+++++++.+..
T Consensus         9 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~   50 (263)
T 3ak4_A            9 DLSGRKAIVTGGSKGIGAAIARALDKAGATVAIADLDVMAAQ   50 (263)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH
T ss_pred             CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence            367999999998 68999999999999999999999886554

>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp}

Probab=95.36  E-value=0.028  Score=55.02  Aligned_cols=64  Identities=17%  Similarity=0.090  Sum_probs=49.4

Q ss_pred             EEEEEcC-ChhHHHHHHHHHhC-CCEEEEEeCCchhhhhhhcCCceee-----C---HHHHhcCCcEEEEcCCC
Q psy4626          79 QVVLCGY-GEVGKGCCQSLKGL-GCVIYITEIDPICALQACMDGFSVV-----K---LNEVIRTVDIVVTATGN  142 (542)
Q Consensus        79 tVvViG~-G~IG~~vA~~l~~~-Ga~Viv~d~dp~r~~~A~~~G~~v~-----~---l~e~l~~aDvVi~atG~  142 (542)
                      +|+|+|. |.||+.+++.|... |.+|++..+++.+.......+..++     +   +.++++++|+||.+.|.
T Consensus         2 ~ilVtGatG~iG~~l~~~L~~~~g~~V~~~~R~~~~~~~~~~~~v~~~~~D~~d~~~l~~~~~~~d~vi~~a~~   75 (289)
T 3e48_A            2 NIMLTGATGHLGTHITNQAIANHIDHFHIGVRNVEKVPDDWRGKVSVRQLDYFNQESMVEAFKGMDTVVFIPSI   75 (289)
T ss_dssp             CEEEETTTSHHHHHHHHHHHHTTCTTEEEEESSGGGSCGGGBTTBEEEECCTTCHHHHHHHTTTCSEEEECCCC
T ss_pred             EEEEEcCCchHHHHHHHHHhhCCCCcEEEEECCHHHHHHhhhCCCEEEEcCCCCHHHHHHHHhCCCEEEEeCCC
Confidence            6899996 99999999999988 9999999998876543334455432     2   34567899999998764

>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum}

Probab=95.36  E-value=0.031  Score=54.12  Aligned_cols=66  Identities=18%  Similarity=0.134  Sum_probs=46.1

Q ss_pred             ccCcEEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHH---HHh-------cCCcEEEEcCC
Q psy4626          75 FGGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLN---EVI-------RTVDIVVTATG  141 (542)
Q Consensus        75 l~GktVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~---e~l-------~~aDvVi~atG  141 (542)
                      .-||+++|.|. |.||+.+|+.|...|++|+++++++.+.... ..-+++.+.+   +++       ...|++|.+.|
T Consensus        20 ~m~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~-~~~~d~~d~~~v~~~~~~~~~~~g~iD~li~~Ag   96 (251)
T 3orf_A           20 HMSKNILVLGGSGALGAEVVKFFKSKSWNTISIDFRENPNADH-SFTIKDSGEEEIKSVIEKINSKSIKVDTFVCAAG   96 (251)
T ss_dssp             --CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCTTSSE-EEECSCSSHHHHHHHHHHHHTTTCCEEEEEECCC
T ss_pred             ccCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCccccccc-ceEEEeCCHHHHHHHHHHHHHHcCCCCEEEECCc
Confidence            44899999998 6799999999999999999999887654321 1111233322   222       35799999877

>3csu_A Protein (aspartate carbamoyltransferase); transferase (carbamoyl-P; 1.88A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1r0b_A* 1q95_A* 1raa_A* 1rab_A* 1rac_A* 1rad_A* 1rae_A* 1raf_A* 1rag_A* 1rah_A* 1rai_A* 1r0c_A* 1za2_A* 1za1_A* 2fzc_A* 2fzg_A* 2fzk_A* 2h3e_A* 2ipo_A* 2qg9_A ...

Probab=95.35  E-value=0.17  Score=51.55  Aligned_cols=130  Identities=19%  Similarity=0.228  Sum_probs=83.5

Q ss_pred             hccc-ccceeecCch----hhhHHHHhHHHHHHHHHHHHHhhcCccccCcEEEEEcCC---hhHHHHHHHHHhC-CCEEE
Q psy4626          34 AGKL-TVPAMNVNDS----VTKTKFDNLYMCRESIIDSLKRSTDVMFGGKQVVLCGYG---EVGKGCCQSLKGL-GCVIY  104 (542)
Q Consensus        34 ~~~L-~~PV~~vn~s----~~K~~fd~~~g~~~s~~~ai~r~~~~~l~GktVvViG~G---~IG~~vA~~l~~~-Ga~Vi  104 (542)
                      .... .+||||.-+.    ++-.+.|-.         .+++..+ .+.|.+|+++|-|   ++....+..+..+ |++|.
T Consensus       116 a~~~~~vPVINag~G~~~HPtQaLaDl~---------Ti~e~~g-~l~gl~va~vGD~~~~rva~Sl~~~~~~~~g~~v~  185 (310)
T 3csu_A          116 TEFSGNVPVLNAGDGSNQHPTQTLLDLF---------TIQETQG-RLDNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFY  185 (310)
T ss_dssp             HHHCTTCCEEEEEETTSCCHHHHHHHHH---------HHHHHHS-CSSSCEEEEESCTTTCHHHHHHHHHHHTSSSCEEE
T ss_pred             HHhcCCCCEEcCccCCCCCchHHHHHHH---------HHHHHhC-CcCCcEEEEECCCCCCchHHHHHHHHHhCCCCEEE
Confidence            3345 7899987552    344443322         2222222 4789999999984   8899999999999 99999


Q ss_pred             EEeCCchhh-----hhhhcCCce---eeCHHHHhcCCcEEEEcCCC--------------cccCCHHHHhccCCCeEEEe
Q psy4626         105 ITEIDPICA-----LQACMDGFS---VVKLNEVIRTVDIVVTATGN--------------KNVVTREHMDKMKNGCVVCN  162 (542)
Q Consensus       105 v~d~dp~r~-----~~A~~~G~~---v~~l~e~l~~aDvVi~atG~--------------~~lI~~e~l~~mk~Gailvn  162 (542)
                      ++-+.....     ..+...|..   ..+++++++++|+|.+..-.              ..-++.+.++.+|+++++.-
T Consensus       186 ~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~eav~~aDvvyt~~~q~er~~~~~~~~~~~~y~v~~~ll~~a~~~ai~mH  265 (310)
T 3csu_A          186 FIAPDALAMPQYILDMLDEKGIAWSLHSSIEEVMAEVDILYMTRVQKERLDPSEYANVKAQFVLRASDLHNAKANMKVLH  265 (310)
T ss_dssp             EECCGGGCCCHHHHHHHHHTTCCEEECSCGGGTTTTCSEEEECC-----------------CCBCGGGGTTCCTTCEEEC
T ss_pred             EECCcccccCHHHHHHHHHcCCeEEEEcCHHHHhcCCCEEEECCccccccCHHHHHHHhhccCCCHHHHhhcCCCCEEEC
Confidence            985432211     223344543   24688999999999986421              23456667777778887776


Q ss_pred             ccCCCcccChH
Q psy4626         163 MGHSNTEIDVN  173 (542)
Q Consensus       163 vG~g~~eid~~  173 (542)
                      ++--..||+-+
T Consensus       266 ~lPrg~EI~~e  276 (310)
T 3csu_A          266 PLPRVDEIATD  276 (310)
T ss_dssp             CSCCSSSBCHH
T ss_pred             CCCCCCeecHH
Confidence            66544455444

>2ef0_A Ornithine carbamoyltransferase; TTHA1199, thermus thermophil structural genomics, NPPSFA; 2.00A {Thermus thermophilus}

Probab=95.35  E-value=0.15  Score=51.73  Aligned_cols=100  Identities=12%  Similarity=0.003  Sum_probs=71.1

Q ss_pred             cccCcEEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCchhhhhh--hcCCce-eeCHHHHhcCCcEEEEcC----C----
Q psy4626          74 MFGGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQA--CMDGFS-VVKLNEVIRTVDIVVTAT----G----  141 (542)
Q Consensus        74 ~l~GktVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A--~~~G~~-v~~l~e~l~~aDvVi~at----G----  141 (542)
                      .+.|.+|+++|- +++....+..+..+|++|.++-+........  ....+. ..+++++++++|+|.+..    |    
T Consensus       151 ~l~gl~ia~vGD~~rva~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~d~~eav~~aDvvy~~~~~smg~~~~  230 (301)
T 2ef0_A          151 GLAGLEVAWVGDGNNVLNSLLEVAPLAGLKVRVATPKGYEPDPGLLKRANAFFTHDPKEAALGAHALYTDVWTSMGQEAE  230 (301)
T ss_dssp             CCTTCEEEEESCCCHHHHHHHHHHHHHTCEEEEECCTTCCCCHHHHHHHTCEEESCHHHHHTTCSEEEECCCC-------
T ss_pred             CcCCcEEEEECCCchhHHHHHHHHHHcCCEEEEECCchhcCCHHHHhhceeEEECCHHHHhcCCCEEEecCcccCCcccc
Confidence            478999999999 6788999999999999999986433221110  001233 457899999999999943    1    


Q ss_pred             --------CcccCCHHHHhccCCCeEEEeccCC--CcccChH
Q psy4626         142 --------NKNVVTREHMDKMKNGCVVCNMGHS--NTEIDVN  173 (542)
Q Consensus       142 --------~~~lI~~e~l~~mk~GailvnvG~g--~~eid~~  173 (542)
                              ...-++.+.++.+|+++++.-++-.  ..||+-+
T Consensus       231 ~~~~~~~~~~y~v~~e~l~~a~~~ai~mHplP~~Rg~EI~~e  272 (301)
T 2ef0_A          231 REKRLRDFQGFQVNGELLKLLRPEGVFLHCLPAHYGEETTEE  272 (301)
T ss_dssp             -CHHHHHTTTCCBCHHHHTTSCTTCEEEECSCCCBTTTBCHH
T ss_pred             hhHHHHHhhccccCHHHHHhcCCCcEEECCCCCCCCCccCHH
Confidence                    1244677888888999999887754  3555544

>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium}

Probab=95.35  E-value=0.023  Score=58.43  Aligned_cols=83  Identities=14%  Similarity=0.172  Sum_probs=58.1

Q ss_pred             cEEEEEcCChhHHHHHHHHH-h-CCCEEE-EEeCCchhhhh-hhcCC--ce-eeCHHHHhc--CCcEEEEcCCCcccCCH
Q psy4626          78 KQVVLCGYGEVGKGCCQSLK-G-LGCVIY-ITEIDPICALQ-ACMDG--FS-VVKLNEVIR--TVDIVVTATGNKNVVTR  148 (542)
Q Consensus        78 ktVvViG~G~IG~~vA~~l~-~-~Ga~Vi-v~d~dp~r~~~-A~~~G--~~-v~~l~e~l~--~aDvVi~atG~~~lI~~  148 (542)
                      .+|+|||+|.+|+..+..++ . -|++++ ++|+++.++.. +...|  .. +.++++++.  +.|+|+.|+.+..-. .
T Consensus        24 ~rvgiIG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~g~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~-~  102 (357)
T 3ec7_A           24 LKAGIVGIGMIGSDHLRRLANTVSGVEVVAVCDIVAGRAQAALDKYAIEAKDYNDYHDLINDKDVEVVIITASNEAHA-D  102 (357)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTCTTEEEEEEECSSTTHHHHHHHHHTCCCEEESSHHHHHHCTTCCEEEECSCGGGHH-H
T ss_pred             eeEEEECCcHHHHHHHHHHHhhCCCcEEEEEEeCCHHHHHHHHHHhCCCCeeeCCHHHHhcCCCCCEEEEcCCcHHHH-H
Confidence            48999999999999999887 4 477766 78999987654 33345  33 457888875  689999998643222 2


Q ss_pred             HHHhccCCCeEEE
Q psy4626         149 EHMDKMKNGCVVC  161 (542)
Q Consensus       149 e~l~~mk~Gailv  161 (542)
                      .....++.|.-++
T Consensus       103 ~~~~al~aGk~Vl  115 (357)
T 3ec7_A          103 VAVAALNANKYVF  115 (357)
T ss_dssp             HHHHHHHTTCEEE
T ss_pred             HHHHHHHCCCCEE
Confidence            3455566665444

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=95.34  E-value=0.0064  Score=60.88  Aligned_cols=87  Identities=14%  Similarity=0.103  Sum_probs=59.4

Q ss_pred             cEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce---e-eCHHHHh-cCCcEEEEcCCCcccCCHHHHh
Q psy4626          78 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS---V-VKLNEVI-RTVDIVVTATGNKNVVTREHMD  152 (542)
Q Consensus        78 ktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~---v-~~l~e~l-~~aDvVi~atG~~~lI~~e~l~  152 (542)
                      .+++|+|+|.+|..+|..|...|.+|+++++++.+.......|..   + .+..+.+ ..+|+||.|+-...+  .+.++
T Consensus         3 mkI~iiGaGa~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~D~vilavk~~~~--~~~l~   80 (294)
T 3g17_A            3 LSVAIIGPGAVGTTIAYELQQSLPHTTLIGRHAKTITYYTVPHAPAQDIVVKGYEDVTNTFDVIIIAVKTHQL--DAVIP   80 (294)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHCTTCEEEESSCEEEEEESSTTSCCEEEEEEEGGGCCSCEEEEEECSCGGGH--HHHGG
T ss_pred             cEEEEECCCHHHHHHHHHHHHCCCeEEEEEeccCcEEEEecCCeeccceecCchHhcCCCCCEEEEeCCccCH--HHHHH
Confidence            479999999999999999998899999999887544322233421   1 2333444 789999999754332  23333


Q ss_pred             ----ccCCCeEEEeccCC
Q psy4626         153 ----KMKNGCVVCNMGHS  166 (542)
Q Consensus       153 ----~mk~GailvnvG~g  166 (542)
                          .++++..++.+.-|
T Consensus        81 ~l~~~l~~~~~iv~~~nG   98 (294)
T 3g17_A           81 HLTYLAHEDTLIILAQNG   98 (294)
T ss_dssp             GHHHHEEEEEEEEECCSS
T ss_pred             HHHHhhCCCCEEEEeccC
Confidence                34567777776655

>3mw9_A GDH 1, glutamate dehydrogenase 1; allostery, inhibition, oxidoreducta; HET: GLU GTP NAD; 2.40A {Bos taurus} SCOP: c.2.1.7 c.58.1.1 PDB: 3mvo_A* 3mvq_A* 3qmu_A* 3etd_A* 3ete_A* 3etg_A* 1l1f_A 1nr1_A 1nr7_A 1nqt_A 1hwx_A* 1hwy_A* 1hwz_A*

Probab=95.34  E-value=0.073  Score=57.51  Aligned_cols=80  Identities=24%  Similarity=0.376  Sum_probs=55.2

Q ss_pred             cccCcEEEEEcCChhHHHHHHHHHhCCCEEEE-Ee----------CCchhhhhhhc-----C---CceeeCHHHHh-cCC
Q psy4626          74 MFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYI-TE----------IDPICALQACM-----D---GFSVVKLNEVI-RTV  133 (542)
Q Consensus        74 ~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv-~d----------~dp~r~~~A~~-----~---G~~v~~l~e~l-~~a  133 (542)
                      .+.|++|+|-|+|++|..+|+.|..+|++|+. .|          +|+..+.....     .   +...++ ++++ ..|
T Consensus       241 ~l~g~tVaVQG~GNVG~~aa~~L~e~GakVVavsDs~G~iyd~~Gid~~~l~~~k~~~g~i~~~~~a~~~~-~~il~~~~  319 (501)
T 3mw9_A          241 GFGDKTFVVQGFGNVGLHSMRYLHRFGAKCITVGESDGSIWNPDGIDPKELEDFKLQHGTILGFPKAKIYE-GSILEVDC  319 (501)
T ss_dssp             SSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCEEECTTCCCHHHHHHHHHHHSSSTTCTTSEEEC-SCGGGSCC
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHhcCCeecccCceeec-cccccccc
Confidence            47899999999999999999999999999886 33          33333222111     1   122222 2334 579


Q ss_pred             cEEEEcCCCcccCCHHHHhccC
Q psy4626         134 DIVVTATGNKNVVTREHMDKMK  155 (542)
Q Consensus       134 DvVi~atG~~~lI~~e~l~~mk  155 (542)
                      ||++-|... +.|+.+....++
T Consensus       320 DIliPcA~~-n~I~~~na~~l~  340 (501)
T 3mw9_A          320 DILIPAASE-KQLTKSNAPRVK  340 (501)
T ss_dssp             SEEEECSSS-CCBCTTTGGGCC
T ss_pred             eEEeecccc-CccCHhHHHHcC
Confidence            999998643 688877777775

>1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A

Probab=95.34  E-value=0.023  Score=54.99  Aligned_cols=69  Identities=17%  Similarity=0.193  Sum_probs=48.5

Q ss_pred             cccCcEEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHH---HHh-------cCCcEEEEcCCC
Q psy4626          74 MFGGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLN---EVI-------RTVDIVVTATGN  142 (542)
Q Consensus        74 ~l~GktVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~---e~l-------~~aDvVi~atG~  142 (542)
                      .+.||+++|.|. |-||+.+++.|...|++|+++++++.+.........++.+.+   +++       ...|++|.+.|.
T Consensus        12 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~lv~~Ag~   91 (247)
T 1uzm_A           12 PFVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAPKGLFGVEVDVTDSDAVDRAFTAVEEHQGPVEVLVSNAGL   91 (247)
T ss_dssp             CCCCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCCCTTSEEEECCTTCHHHHHHHHHHHHHHHSSCSEEEEECSC
T ss_pred             cCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHhcCeeccCCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence            467999999997 689999999999999999999988765432210001222222   222       368999998763

>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1

Probab=95.34  E-value=0.025  Score=57.72  Aligned_cols=67  Identities=22%  Similarity=0.247  Sum_probs=48.7

Q ss_pred             CcEEEEEcCChhHHHHHHHHHhCCC--EEEEEeCCchhhhh-hhc--CC------cee-eCHHHHhcCCcEEEEcCCCc
Q psy4626          77 GKQVVLCGYGEVGKGCCQSLKGLGC--VIYITEIDPICALQ-ACM--DG------FSV-VKLNEVIRTVDIVVTATGNK  143 (542)
Q Consensus        77 GktVvViG~G~IG~~vA~~l~~~Ga--~Viv~d~dp~r~~~-A~~--~G------~~v-~~l~e~l~~aDvVi~atG~~  143 (542)
                      ..+|+|+|.|.+|..++..+...+.  ++..+|+++.++.. +..  +.      ..+ .+..+++++||+||.+.|.+
T Consensus         5 ~~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~v~~~~~~a~~~aDvVii~ag~~   83 (318)
T 1ez4_A            5 HQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSGEYSDCKDADLVVITAGAP   83 (318)
T ss_dssp             BCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEECCGGGGTTCSEEEECCCC-
T ss_pred             CCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCeEEEECCHHHhCCCCEEEECCCCC
Confidence            4689999999999999999887675  89999999876542 211  11      111 13456789999999988743

>2o7s_A DHQ-SDH PR, bifunctional 3-dehydroquinate dehydratase/shikima dehydrogenase; shikimate, NADPH, dehydroshikimate, bifunctional enzyme; HET: DHK TLA NAP; 1.78A {Arabidopsis thaliana} PDB: 2o7q_A* 2gpt_A*

Probab=95.32  E-value=0.018  Score=62.72  Aligned_cols=68  Identities=22%  Similarity=0.215  Sum_probs=44.2

Q ss_pred             cccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhh-hcCCceeeCHHHH----hcCCcEEEEcCC
Q psy4626          74 MFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQA-CMDGFSVVKLNEV----IRTVDIVVTATG  141 (542)
Q Consensus        74 ~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A-~~~G~~v~~l~e~----l~~aDvVi~atG  141 (542)
                      .+.|++++|+|.|-+|+.++..|...|++|+++++++.++... ...+..+..++++    ....|++|.++|
T Consensus       361 ~l~~k~vlV~GaGGig~aia~~L~~~G~~V~i~~R~~~~a~~la~~~~~~~~~~~dl~~~~~~~~DilVN~ag  433 (523)
T 2o7s_A          361 PLASKTVVVIGAGGAGKALAYGAKEKGAKVVIANRTYERALELAEAIGGKALSLTDLDNYHPEDGMVLANTTS  433 (523)
T ss_dssp             -----CEEEECCSHHHHHHHHHHHHHCC-CEEEESSHHHHHHHHHHTTC-CEETTTTTTC--CCSEEEEECSS
T ss_pred             ccCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcCCceeeHHHhhhccccCceEEEECCC
Confidence            4678999999999999999999999999999999988765432 2223222222221    234688888876

>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A

Probab=95.32  E-value=0.024  Score=59.92  Aligned_cols=66  Identities=20%  Similarity=0.321  Sum_probs=47.0

Q ss_pred             cccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceee---CH---HHHhcCCcEEEEc
Q psy4626          74 MFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVV---KL---NEVIRTVDIVVTA  139 (542)
Q Consensus        74 ~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~---~l---~e~l~~aDvVi~a  139 (542)
                      .++|++|+|+|.|.+|+.+++.++.+|.+|+++|.+|........+.+.+.   +.   .++++++|+|+..
T Consensus        32 ~~~~~~IlIlG~G~lg~~~~~aa~~lG~~v~v~d~~~~~p~~~~ad~~~~~~~~d~~~l~~~a~~~D~V~~~  103 (419)
T 4e4t_A           32 ILPGAWLGMVGGGQLGRMFCFAAQSMGYRVAVLDPDPASPAGAVADRHLRAAYDDEAALAELAGLCEAVSTE  103 (419)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCTTCHHHHHSSEEECCCTTCHHHHHHHHHHCSEEEEC
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCcCchhhhCCEEEECCcCCHHHHHHHHhcCCEEEEc
Confidence            568999999999999999999999999999999877653321111212221   22   2345788988743

>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*

Probab=95.30  E-value=0.063  Score=54.57  Aligned_cols=64  Identities=20%  Similarity=0.222  Sum_probs=47.3

Q ss_pred             EEEEEcC-ChhHHHHHHHHHhCC--CEEEEEeCCchhhhhhh--cCC-----cee----eCHHHHhcCCcEEEEcCCCc
Q psy4626          79 QVVLCGY-GEVGKGCCQSLKGLG--CVIYITEIDPICALQAC--MDG-----FSV----VKLNEVIRTVDIVVTATGNK  143 (542)
Q Consensus        79 tVvViG~-G~IG~~vA~~l~~~G--a~Viv~d~dp~r~~~A~--~~G-----~~v----~~l~e~l~~aDvVi~atG~~  143 (542)
                      +|+|+|. |.+|..++..|...|  -+|..+|+++.+ ..+.  .++     ...    .+++++++++|+||.+.|.+
T Consensus         2 KI~IiGa~G~VG~~la~~L~~~~~~~ev~L~Di~~~~-~~a~dL~~~~~~~~l~~~~~t~d~~~a~~~aDvVvi~ag~~   79 (314)
T 1mld_A            2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTP-GVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGVP   79 (314)
T ss_dssp             EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHH-HHHHHHTTSSSSCEEEEEESGGGHHHHHTTCSEEEECCSCC
T ss_pred             EEEEECCCChHHHHHHHHHHhCCCCcEEEEEeCCccH-HHHHHHhccCcCceEEEecCCCCHHHHhCCCCEEEECCCcC
Confidence            7999998 999999999998877  589999998832 2221  111     111    24667899999999988754

>1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A*

Probab=95.30  E-value=0.033  Score=54.22  Aligned_cols=36  Identities=19%  Similarity=0.356  Sum_probs=33.4

Q ss_pred             ccCcEEEEEcC---ChhHHHHHHHHHhCCCEEEEEeCCc
Q psy4626          75 FGGKQVVLCGY---GEVGKGCCQSLKGLGCVIYITEIDP  110 (542)
Q Consensus        75 l~GktVvViG~---G~IG~~vA~~l~~~Ga~Viv~d~dp  110 (542)
                      +.||+++|.|.   |-||+.+|+.|...|++|+++++++
T Consensus         7 l~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~   45 (265)
T 1qsg_A            7 LSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQND   45 (265)
T ss_dssp             TTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESST
T ss_pred             cCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEcCcH
Confidence            57899999998   5899999999999999999999887

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}

Probab=95.29  E-value=0.017  Score=59.76  Aligned_cols=69  Identities=12%  Similarity=0.212  Sum_probs=50.2

Q ss_pred             ccCcEEEEEcC-ChhHHHHHHHHHhCCC--EEEEEeCCchhhhh-hh--cC------Cce-eeCHHHHhcCCcEEEEcCC
Q psy4626          75 FGGKQVVLCGY-GEVGKGCCQSLKGLGC--VIYITEIDPICALQ-AC--MD------GFS-VVKLNEVIRTVDIVVTATG  141 (542)
Q Consensus        75 l~GktVvViG~-G~IG~~vA~~l~~~Ga--~Viv~d~dp~r~~~-A~--~~------G~~-v~~l~e~l~~aDvVi~atG  141 (542)
                      +.+++|+|+|. |.||..+|..+..+|.  +|..+|+++.++.- +.  .+      ... ..+..+++++||+||.+.|
T Consensus         6 ~~~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~~~k~~g~a~DL~~~~~~~~~i~~t~d~~~al~dADvVvitaG   85 (343)
T 3fi9_A            6 LTEEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEIRHCGFEGLNLTFTSDIKEALTDAKYIVSSGG   85 (343)
T ss_dssp             SCSSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSCHHHHHHHHHHHHHHCCTTCCCEEESCHHHHHTTEEEEEECCC
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCCchhHHHHHHhhhhCcCCCCceEEcCCHHHHhCCCCEEEEccC
Confidence            45789999998 9999999999988885  89999998765431 10  11      111 1345678899999999988


Q ss_pred             Cc
Q psy4626         142 NK  143 (542)
Q Consensus       142 ~~  143 (542)
                      .+
T Consensus        86 ~p   87 (343)
T 3fi9_A           86 AP   87 (343)
T ss_dssp             --
T ss_pred             CC
Confidence            64

>1dxh_A Ornithine carbamoyltransferase; transcarbamylase; 2.50A {Pseudomonas aeruginosa} SCOP: c.78.1.1 c.78.1.1 PDB: 1ort_A

Probab=95.27  E-value=0.14  Score=52.73  Aligned_cols=100  Identities=16%  Similarity=0.088  Sum_probs=71.5

Q ss_pred             HHhhcCccccCcEEEEEcCC--hhHHHHHHHHHhCCCEEEEEeCCchhh-----h----hhhcCCce---eeCHHHHhcC
Q psy4626          67 LKRSTDVMFGGKQVVLCGYG--EVGKGCCQSLKGLGCVIYITEIDPICA-----L----QACMDGFS---VVKLNEVIRT  132 (542)
Q Consensus        67 i~r~~~~~l~GktVvViG~G--~IG~~vA~~l~~~Ga~Viv~d~dp~r~-----~----~A~~~G~~---v~~l~e~l~~  132 (542)
                      +++..+..+.|.+|+++|-|  ++....+..+..+|++|.++-+.....     .    .|...|..   ..++++++++
T Consensus       145 i~e~~g~~l~gl~va~vGD~~~~va~Sl~~~~~~~G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~~v~~~~d~~eav~~  224 (335)
T 1dxh_A          145 MREHSDKPLHDISYAYLGDARNNMGNSLLLIGAKLGMDVRIAAPKALWPHDEFVAQCKKFAEESGAKLTLTEDPKEAVKG  224 (335)
T ss_dssp             HHHTCSSCGGGCEEEEESCCSSHHHHHHHHHHHHTTCEEEEECCGGGSCCHHHHHHHHHHHHHHTCEEEEESCHHHHTTT
T ss_pred             HHHHcCCCcCCeEEEEecCCccchHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHHHHcCCeEEEEeCHHHHhCC
Confidence            44433325789999999996  899999999999999999985432211     1    12244533   3468899999


Q ss_pred             CcEEEEcCC-----------------CcccCCHHHHhcc-CCCeEEEeccCC
Q psy4626         133 VDIVVTATG-----------------NKNVVTREHMDKM-KNGCVVCNMGHS  166 (542)
Q Consensus       133 aDvVi~atG-----------------~~~lI~~e~l~~m-k~GailvnvG~g  166 (542)
                      +|||.+..-                 .+.-++.+.++.+ ++++++.-++-.
T Consensus       225 aDvvytd~w~smg~~~e~~~er~~~~~~y~v~~~ll~~a~~~~ai~mHcLP~  276 (335)
T 1dxh_A          225 VDFVHTDVWVSMGEPVEAWGERIKELLPYQVNMEIMKATGNPRAKFMHCLPA  276 (335)
T ss_dssp             CSEEEECCCSCSSSCGGGCHHHHHHHGGGCBCHHHHHTTCCSSCEEEECSCC
T ss_pred             CCEEEeCCccccCccchhhHHHHHHhhcceeCHHHHHhccCCCeEEECCCCC
Confidence            999999532                 1245677888888 899988877753

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=95.27  E-value=0.038  Score=54.91  Aligned_cols=69  Identities=19%  Similarity=0.140  Sum_probs=49.3

Q ss_pred             cccCcEEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCchhhhhhh-------cCCceee---C------HHHHhcCCcEE
Q psy4626          74 MFGGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQAC-------MDGFSVV---K------LNEVIRTVDIV  136 (542)
Q Consensus        74 ~l~GktVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~-------~~G~~v~---~------l~e~l~~aDvV  136 (542)
                      ...|++|+|+|. |.||+.+++.|...|.+|+++++++.+.....       ..++..+   +      ++++++++|+|
T Consensus         8 ~~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~v   87 (342)
T 1y1p_A            8 LPEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIKGAAGV   87 (342)
T ss_dssp             SCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTTTCSEE
T ss_pred             CCCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCcccHHHHHHHhhccCCCceEEEEecCCcChHHHHHHHcCCCEE
Confidence            357899999998 99999999999999999999998875432111       0122221   2      23445678998


Q ss_pred             EEcCCC
Q psy4626         137 VTATGN  142 (542)
Q Consensus       137 i~atG~  142 (542)
                      |.+.|.
T Consensus        88 ih~A~~   93 (342)
T 1y1p_A           88 AHIASV   93 (342)
T ss_dssp             EECCCC
T ss_pred             EEeCCC
Confidence            887653

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=95.26  E-value=0.064  Score=54.55  Aligned_cols=67  Identities=18%  Similarity=0.105  Sum_probs=48.6

Q ss_pred             CcEEEEEcCChhHHH-HHHHHHhCCCEEEEEeCCch--hhhhhhcCCceee---CHHHHh-cCCcEEEEcCCCc
Q psy4626          77 GKQVVLCGYGEVGKG-CCQSLKGLGCVIYITEIDPI--CALQACMDGFSVV---KLNEVI-RTVDIVVTATGNK  143 (542)
Q Consensus        77 GktVvViG~G~IG~~-vA~~l~~~Ga~Viv~d~dp~--r~~~A~~~G~~v~---~l~e~l-~~aDvVi~atG~~  143 (542)
                      .++|.|+|.|.+|.. +|+.|+..|++|.++|..+.  ...+-...|..+.   +.+.+. .++|+||..+|-+
T Consensus         4 ~~~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D~~~~~~~~~~L~~~gi~v~~g~~~~~l~~~~~d~vV~Spgi~   77 (326)
T 3eag_A            4 MKHIHIIGIGGTFMGGLAAIAKEAGFEVSGCDAKMYPPMSTQLEALGIDVYEGFDAAQLDEFKADVYVIGNVAK   77 (326)
T ss_dssp             CCEEEEESCCSHHHHHHHHHHHHTTCEEEEEESSCCTTHHHHHHHTTCEEEESCCGGGGGSCCCSEEEECTTCC
T ss_pred             CcEEEEEEECHHHHHHHHHHHHhCCCEEEEEcCCCCcHHHHHHHhCCCEEECCCCHHHcCCCCCCEEEECCCcC
Confidence            578999999999985 89999999999999998653  2222234566543   233333 4789999887743

>3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus}

Probab=95.25  E-value=0.028  Score=55.39  Aligned_cols=76  Identities=14%  Similarity=0.216  Sum_probs=52.5

Q ss_pred             cEEEEEcCChhHHHHHHHHHhCCCEEEE-EeCCchhhhhhhcCCcee-eCHHHHhcCCcEEEEcCCCcccCCHHHHhccC
Q psy4626          78 KQVVLCGYGEVGKGCCQSLKGLGCVIYI-TEIDPICALQACMDGFSV-VKLNEVIRTVDIVVTATGNKNVVTREHMDKMK  155 (542)
Q Consensus        78 ktVvViG~G~IG~~vA~~l~~~Ga~Viv-~d~dp~r~~~A~~~G~~v-~~l~e~l~~aDvVi~atG~~~lI~~e~l~~mk  155 (542)
                      .+|+|+|+|.+|+.+++.+...+-+++. +|+++..     ..|+.+ .++++++ .+|++|+.|... .+ .+.++ ++
T Consensus         4 mkI~ViGaGrMG~~i~~~l~~~~~eLva~~d~~~~~-----~~gv~v~~dl~~l~-~~DVvIDft~p~-a~-~~~~~-l~   74 (243)
T 3qy9_A            4 MKILLIGYGAMNQRVARLAEEKGHEIVGVIENTPKA-----TTPYQQYQHIADVK-GADVAIDFSNPN-LL-FPLLD-ED   74 (243)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCC-------CCSCBCSCTTTCT-TCSEEEECSCHH-HH-HHHHT-SC
T ss_pred             eEEEEECcCHHHHHHHHHHHhCCCEEEEEEecCccc-----cCCCceeCCHHHHh-CCCEEEEeCChH-HH-HHHHH-Hh
Confidence            4799999999999999999877656544 6766542     345554 3567777 899999987433 33 24566 77


Q ss_pred             CCeEEEe
Q psy4626         156 NGCVVCN  162 (542)
Q Consensus       156 ~Gailvn  162 (542)
                      .|.-++.
T Consensus        75 ~g~~vVi   81 (243)
T 3qy9_A           75 FHLPLVV   81 (243)
T ss_dssp             CCCCEEE
T ss_pred             cCCceEe
Confidence            7765553

>1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A

Probab=95.22  E-value=0.037  Score=56.76  Aligned_cols=83  Identities=8%  Similarity=0.110  Sum_probs=57.9

Q ss_pred             cEEEEEcCChhHHHHHHHHHhC-CCEE-EEEeCCchhhhh-hhcCCc----e-eeCHHHHhc--CCcEEEEcCCCcccCC
Q psy4626          78 KQVVLCGYGEVGKGCCQSLKGL-GCVI-YITEIDPICALQ-ACMDGF----S-VVKLNEVIR--TVDIVVTATGNKNVVT  147 (542)
Q Consensus        78 ktVvViG~G~IG~~vA~~l~~~-Ga~V-iv~d~dp~r~~~-A~~~G~----~-v~~l~e~l~--~aDvVi~atG~~~lI~  147 (542)
                      -+|+|||+|.+|+..+..++.. ++++ .++|+++.++.. +...|+    . +.++++++.  ++|+|+.|+.+..-. 
T Consensus         7 ~~vgiiG~G~ig~~~~~~l~~~~~~~lv~v~d~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~-   85 (362)
T 1ydw_A            7 IRIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKAFATANNYPESTKIHGSYESLLEDPEIDALYVPLPTSLHV-   85 (362)
T ss_dssp             EEEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCCTTCEEESSHHHHHHCTTCCEEEECCCGGGHH-
T ss_pred             eEEEEECchHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCCCCCeeeCCHHHHhcCCCCCEEEEcCChHHHH-
Confidence            3799999999999999888875 5665 578998877543 334453    2 357788874  699999998543211 


Q ss_pred             HHHHhccCCCeEEE
Q psy4626         148 REHMDKMKNGCVVC  161 (542)
Q Consensus       148 ~e~l~~mk~Gailv  161 (542)
                      .-....++.|.-++
T Consensus        86 ~~~~~al~aGk~V~   99 (362)
T 1ydw_A           86 EWAIKAAEKGKHIL   99 (362)
T ss_dssp             HHHHHHHTTTCEEE
T ss_pred             HHHHHHHHCCCeEE
Confidence            23455677777544

>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}

Probab=95.18  E-value=0.092  Score=52.21  Aligned_cols=37  Identities=11%  Similarity=0.246  Sum_probs=33.4

Q ss_pred             cccCcEEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCc
Q psy4626          74 MFGGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDP  110 (542)
Q Consensus        74 ~l~GktVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp  110 (542)
                      .+.||+++|.|. |-||+.+|+.|...|++|+++++++
T Consensus        46 ~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~~~~   83 (294)
T 3r3s_A           46 RLKDRKALVTGGDSGIGRAAAIAYAREGADVAINYLPA   83 (294)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCGG
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            468999999998 5799999999999999999998763

>2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A

Probab=95.18  E-value=0.071  Score=51.54  Aligned_cols=37  Identities=24%  Similarity=0.389  Sum_probs=33.7

Q ss_pred             ccCcEEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCch
Q psy4626          75 FGGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPI  111 (542)
Q Consensus        75 l~GktVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp~  111 (542)
                      +.||+++|.|. |-||+.+++.|...|++|+++++++.
T Consensus         2 l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~   39 (255)
T 2q2v_A            2 LKGKTALVTGSTSGIGLGIAQVLARAGANIVLNGFGDP   39 (255)
T ss_dssp             CTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCch
Confidence            46899999998 78999999999999999999998765

>3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum}

Probab=95.17  E-value=0.022  Score=58.57  Aligned_cols=83  Identities=19%  Similarity=0.115  Sum_probs=57.0

Q ss_pred             cEEEEEcCChhHHH-HHHHHHhC-CCEEE-EEeCCchhhhhhhc-C-Cce-eeCHHHHhc--CCcEEEEcCCCcccCCHH
Q psy4626          78 KQVVLCGYGEVGKG-CCQSLKGL-GCVIY-ITEIDPICALQACM-D-GFS-VVKLNEVIR--TVDIVVTATGNKNVVTRE  149 (542)
Q Consensus        78 ktVvViG~G~IG~~-vA~~l~~~-Ga~Vi-v~d~dp~r~~~A~~-~-G~~-v~~l~e~l~--~aDvVi~atG~~~lI~~e  149 (542)
                      -+|+|||+|.+|.. .+..++.. +++++ ++|+++.++..... . +.. +.++++++.  +.|+|+.|+.+..-. .-
T Consensus         6 ~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H~-~~   84 (359)
T 3m2t_A            6 IKVGLVGIGAQMQENLLPSLLQMQDIRIVAACDSDLERARRVHRFISDIPVLDNVPAMLNQVPLDAVVMAGPPQLHF-EM   84 (359)
T ss_dssp             EEEEEECCSHHHHHTHHHHHHTCTTEEEEEEECSSHHHHGGGGGTSCSCCEESSHHHHHHHSCCSEEEECSCHHHHH-HH
T ss_pred             ceEEEECCCHHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHHhcCCCcccCCHHHHhcCCCCCEEEEcCCcHHHH-HH
Confidence            48999999999985 78888776 67776 78999988765433 2 333 457888885  569999997643211 22


Q ss_pred             HHhccCCCeEEE
Q psy4626         150 HMDKMKNGCVVC  161 (542)
Q Consensus       150 ~l~~mk~Gailv  161 (542)
                      ....++.|.-+.
T Consensus        85 ~~~al~aGkhVl   96 (359)
T 3m2t_A           85 GLLAMSKGVNVF   96 (359)
T ss_dssp             HHHHHHTTCEEE
T ss_pred             HHHHHHCCCeEE
Confidence            345566665443

>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*

Probab=95.15  E-value=0.045  Score=56.10  Aligned_cols=68  Identities=15%  Similarity=0.089  Sum_probs=50.1

Q ss_pred             ccCcEEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceee--C------HHHHhcCCcEEEEcCCC
Q psy4626          75 FGGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVV--K------LNEVIRTVDIVVTATGN  142 (542)
Q Consensus        75 l~GktVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~--~------l~e~l~~aDvVi~atG~  142 (542)
                      ..+++|+|+|. |.||+.+++.|...|.+|+++++++.+.......+..++  +      +.++++++|+||.+.|.
T Consensus        27 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~d~Vih~A~~  103 (379)
T 2c5a_A           27 SENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTEDMFCDEFHLVDLRVMENCLKVTEGVDHVFNLAAD  103 (379)
T ss_dssp             TSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCSSSCGGGTCSEEEECCTTSHHHHHHHHTTCSEEEECCCC
T ss_pred             ccCCeEEEECCccHHHHHHHHHHHHCCCeEEEEECCCccchhhccCCceEEECCCCCHHHHHHHhCCCCEEEECcee
Confidence            35789999998 999999999999999999999987754322222233321  2      23556889999998764

>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}

Probab=95.15  E-value=0.029  Score=57.03  Aligned_cols=81  Identities=15%  Similarity=0.201  Sum_probs=55.3

Q ss_pred             EEEEEcCChhHHH-HHHHHHhC-CCEEE-EEeCCchhhhh-hhcCCce--eeCHHHHh--cCCcEEEEcCCCcccCCHHH
Q psy4626          79 QVVLCGYGEVGKG-CCQSLKGL-GCVIY-ITEIDPICALQ-ACMDGFS--VVKLNEVI--RTVDIVVTATGNKNVVTREH  150 (542)
Q Consensus        79 tVvViG~G~IG~~-vA~~l~~~-Ga~Vi-v~d~dp~r~~~-A~~~G~~--v~~l~e~l--~~aDvVi~atG~~~lI~~e~  150 (542)
                      +++|||+|.||+. .+..++.. +++|+ ++|+++.++.. |...|..  +.+.++++  .+.|+|+.||.+..=. .-.
T Consensus        25 rigiIG~G~ig~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~g~~~~y~d~~ell~~~~iDaV~I~tP~~~H~-~~~  103 (350)
T 4had_A           25 RFGIISTAKIGRDNVVPAIQDAENCVVTAIASRDLTRAREMADRFSVPHAFGSYEEMLASDVIDAVYIPLPTSQHI-EWS  103 (350)
T ss_dssp             EEEEESCCHHHHHTHHHHHHHCSSEEEEEEECSSHHHHHHHHHHHTCSEEESSHHHHHHCSSCSEEEECSCGGGHH-HHH
T ss_pred             EEEEEcChHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcCCCeeeCCHHHHhcCCCCCEEEEeCCCchhH-HHH
Confidence            8999999999975 56667655 67766 68999988654 4455653  46788988  4689999987542111 223


Q ss_pred             HhccCCCeEE
Q psy4626         151 MDKMKNGCVV  160 (542)
Q Consensus       151 l~~mk~Gail  160 (542)
                      ...++.|.-+
T Consensus       104 ~~al~aGkhV  113 (350)
T 4had_A          104 IKAADAGKHV  113 (350)
T ss_dssp             HHHHHTTCEE
T ss_pred             HHHHhcCCEE
Confidence            4555566544

>1duv_G Octase-1, ornithine transcarbamoylase; enzyme-inhibitor complex, transferase; HET: PSQ; 1.70A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1akm_A* 2otc_A*

Probab=95.14  E-value=0.15  Score=52.42  Aligned_cols=92  Identities=13%  Similarity=0.125  Sum_probs=68.5

Q ss_pred             cccCcEEEEEcCC--hhHHHHHHHHHhCCCEEEEEeCCchhh-----h----hhhcCCce---eeCHHHHhcCCcEEEEc
Q psy4626          74 MFGGKQVVLCGYG--EVGKGCCQSLKGLGCVIYITEIDPICA-----L----QACMDGFS---VVKLNEVIRTVDIVVTA  139 (542)
Q Consensus        74 ~l~GktVvViG~G--~IG~~vA~~l~~~Ga~Viv~d~dp~r~-----~----~A~~~G~~---v~~l~e~l~~aDvVi~a  139 (542)
                      .+.|.+|+++|-|  ++....+..+..+|++|.++-+.....     .    .|...|..   ..+++++++++|||.+.
T Consensus       152 ~l~gl~ia~vGD~~~~va~Sl~~~~~~~G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~~v~~~~d~~eav~~aDvvytd  231 (333)
T 1duv_G          152 AFNEMTLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQACWPEAALVTECRALAQQNGGNITLTEDVAKGVEGADFIYTD  231 (333)
T ss_dssp             CGGGCEEEEESCTTSHHHHHHHHHHHHHCCEEEEECCGGGCCCHHHHHHHHHHHHHTTCEEEEESCHHHHHTTCSEEEEC
T ss_pred             CCCCcEEEEECCCccchHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHHHHcCCeEEEEECHHHHhCCCCEEEeC
Confidence            5789999999996  899999999999999999985432211     1    12255643   34688999999999994


Q ss_pred             C----C-------------CcccCCHHHHhcc-CCCeEEEeccC
Q psy4626         140 T----G-------------NKNVVTREHMDKM-KNGCVVCNMGH  165 (542)
Q Consensus       140 t----G-------------~~~lI~~e~l~~m-k~GailvnvG~  165 (542)
                      .    |             .+.-++.+.++.+ ++.+++.-++-
T Consensus       232 ~w~smg~~~~~~~er~~~~~~y~v~~~ll~~a~~~~ai~mHcLP  275 (333)
T 1duv_G          232 VWVSMGEAKEKWAERIALLREYQVNSKMMQLTGNPEVKFLHCLP  275 (333)
T ss_dssp             CSSCTTSCTTHHHHHHHHHGGGCBCHHHHHTTCCTTCEEEECSC
T ss_pred             CccccCccccchHHHHHHhhccccCHHHHHhccCCCcEEECCCC
Confidence            3    2             1245677888888 89998887775

>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis}

Probab=95.14  E-value=0.051  Score=53.09  Aligned_cols=42  Identities=21%  Similarity=0.279  Sum_probs=36.9

Q ss_pred             ccccCcEEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCchhhh
Q psy4626          73 VMFGGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICAL  114 (542)
Q Consensus        73 ~~l~GktVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~  114 (542)
                      ..+.||+++|.|. |-||+.+|+.|...|++|+++++++.+..
T Consensus         6 ~~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~   48 (267)
T 3t4x_A            6 MQLKGKTALVTGSTAGIGKAIATSLVAEGANVLINGRREENVN   48 (267)
T ss_dssp             CCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHH
T ss_pred             cccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence            3578999999997 67999999999999999999999886543

>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*

Probab=95.10  E-value=0.03  Score=57.42  Aligned_cols=68  Identities=22%  Similarity=0.246  Sum_probs=49.7

Q ss_pred             cCcEEEEEcCChhHHHHHHHHHhCCC--EEEEEeCCchhhhh-hh--cCCc------ee-eCHHHHhcCCcEEEEcCCCc
Q psy4626          76 GGKQVVLCGYGEVGKGCCQSLKGLGC--VIYITEIDPICALQ-AC--MDGF------SV-VKLNEVIRTVDIVVTATGNK  143 (542)
Q Consensus        76 ~GktVvViG~G~IG~~vA~~l~~~Ga--~Viv~d~dp~r~~~-A~--~~G~------~v-~~l~e~l~~aDvVi~atG~~  143 (542)
                      ...+|+|+|.|.+|..++..+...+.  ++..+|+++.++.. +.  .+..      .+ .+..+++++||+||.+.|.+
T Consensus         8 ~~~KI~IiGaG~vG~~la~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~~~~~a~~~aDvVii~ag~~   87 (326)
T 2zqz_A            8 DHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLSNALPFTSPKKIYSAEYSDAKDADLVVITAGAP   87 (326)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGGGCSEEEECCCCC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCchHhHHHHHHHHHHHHhcCCeEEEECCHHHhCCCCEEEEcCCCC
Confidence            35799999999999999998877665  89999999876532 21  1221      11 13456789999999988743

>2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A

Probab=95.09  E-value=0.049  Score=53.61  Aligned_cols=65  Identities=20%  Similarity=0.244  Sum_probs=48.8

Q ss_pred             CcEEEEEcC-ChhHHHHHHHHHhCC-CEEEEEeCCchhhh--hhhcCCceee-----C---HHHHhcCCcEEEEcCC
Q psy4626          77 GKQVVLCGY-GEVGKGCCQSLKGLG-CVIYITEIDPICAL--QACMDGFSVV-----K---LNEVIRTVDIVVTATG  141 (542)
Q Consensus        77 GktVvViG~-G~IG~~vA~~l~~~G-a~Viv~d~dp~r~~--~A~~~G~~v~-----~---l~e~l~~aDvVi~atG  141 (542)
                      .++|+|+|. |.||+.+++.|...| .+|+++++++.+..  .....+++++     +   +.++++++|+||.++|
T Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~R~~~~~~~~~l~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~a~   81 (299)
T 2wm3_A            5 KKLVVVFGGTGAQGGSVARTLLEDGTFKVRVVTRNPRKKAAKELRLQGAEVVQGDQDDQVIMELALNGAYATFIVTN   81 (299)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCSSEEEEEESCTTSHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEECCC
T ss_pred             CCEEEEECCCchHHHHHHHHHHhcCCceEEEEEcCCCCHHHHHHHHCCCEEEEecCCCHHHHHHHHhcCCEEEEeCC
Confidence            579999998 999999999999888 89999999876532  1112344432     2   3456788999999876

>3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}

Probab=95.07  E-value=0.029  Score=54.96  Aligned_cols=68  Identities=13%  Similarity=0.168  Sum_probs=48.0

Q ss_pred             CcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCCcEEEEcCC--CcccCCHHHHhcc
Q psy4626          77 GKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATG--NKNVVTREHMDKM  154 (542)
Q Consensus        77 GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~aDvVi~atG--~~~lI~~e~l~~m  154 (542)
                      -.+|+|||.|.+|..+|..|+..|.+|+++++.                 + .+.++| |+...-  ...++ .+....+
T Consensus         6 ~mkI~IIG~G~~G~sLA~~L~~~G~~V~~~~~~-----------------~-~~~~aD-ilavP~~ai~~vl-~~l~~~l   65 (232)
T 3dfu_A            6 RLRVGIFDDGSSTVNMAEKLDSVGHYVTVLHAP-----------------E-DIRDFE-LVVIDAHGVEGYV-EKLSAFA   65 (232)
T ss_dssp             CCEEEEECCSCCCSCHHHHHHHTTCEEEECSSG-----------------G-GGGGCS-EEEECSSCHHHHH-HHHHTTC
T ss_pred             CcEEEEEeeCHHHHHHHHHHHHCCCEEEEecCH-----------------H-HhccCC-EEEEcHHHHHHHH-HHHHHhc
Confidence            358999999999999999999999999999851                 1 146688 443321  11222 2334457


Q ss_pred             CCCeEEEecc
Q psy4626         155 KNGCVVCNMG  164 (542)
Q Consensus       155 k~GailvnvG  164 (542)
                      ++|+++++++
T Consensus        66 ~~g~ivvd~s   75 (232)
T 3dfu_A           66 RRGQMFLHTS   75 (232)
T ss_dssp             CTTCEEEECC
T ss_pred             CCCCEEEEEC
Confidence            8899999863

>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus}

Probab=95.06  E-value=0.04  Score=54.10  Aligned_cols=69  Identities=16%  Similarity=0.134  Sum_probs=48.5

Q ss_pred             cccCcEEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce-----eeCH---HHHh-------cCCcEEE
Q psy4626          74 MFGGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-----VVKL---NEVI-------RTVDIVV  137 (542)
Q Consensus        74 ~l~GktVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~-----v~~l---~e~l-------~~aDvVi  137 (542)
                      .+.||+++|.|. |-||+.+|+.|...|++|+++++++.+..........     +.+.   ++++       ...|++|
T Consensus        13 ~~~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lv   92 (266)
T 3p19_A           13 GSMKKLVVITGASSGIGEAIARRFSEEGHPLLLLARRVERLKALNLPNTLCAQVDVTDKYTFDTAITRAEKIYGPADAIV   92 (266)
T ss_dssp             --CCCEEEEESTTSHHHHHHHHHHHHTTCCEEEEESCHHHHHTTCCTTEEEEECCTTCHHHHHHHHHHHHHHHCSEEEEE
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHhhcCCceEEEecCCCHHHHHHHHHHHHHHCCCCCEEE
Confidence            367899999998 6799999999999999999999988765443222222     1222   1222       3789999


Q ss_pred             EcCCC
Q psy4626         138 TATGN  142 (542)
Q Consensus       138 ~atG~  142 (542)
                      .+.|.
T Consensus        93 nnAg~   97 (266)
T 3p19_A           93 NNAGM   97 (266)
T ss_dssp             ECCCC
T ss_pred             ECCCc
Confidence            87763

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=95.06  E-value=0.018  Score=56.41  Aligned_cols=62  Identities=15%  Similarity=0.254  Sum_probs=45.8

Q ss_pred             cCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceee--C------HHHHhcC-CcEEEEcCC
Q psy4626          76 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVV--K------LNEVIRT-VDIVVTATG  141 (542)
Q Consensus        76 ~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~--~------l~e~l~~-aDvVi~atG  141 (542)
                      .+++|+|+|+|.||+.+++.|...|.+|+++++++.+.    ..++.++  +      +.+++++ +|+||.+.|
T Consensus         2 ~~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~~~----~~~~~~~~~Dl~d~~~~~~~~~~~~d~vih~a~   72 (286)
T 3gpi_A            2 SLSKILIAGCGDLGLELARRLTAQGHEVTGLRRSAQPM----PAGVQTLIADVTRPDTLASIVHLRPEILVYCVA   72 (286)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHTTCCEEEEECTTSCC----CTTCCEEECCTTCGGGCTTGGGGCCSEEEECHH
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcccc----ccCCceEEccCCChHHHHHhhcCCCCEEEEeCC
Confidence            35789999999999999999999999999999876542    1222221  2      2334555 899988754

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}

Probab=95.06  E-value=0.025  Score=53.18  Aligned_cols=62  Identities=19%  Similarity=0.270  Sum_probs=46.9

Q ss_pred             EEEEEc-CChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCcee-----eC-H---HHHhcCCcEEEEcCCC
Q psy4626          79 QVVLCG-YGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV-----VK-L---NEVIRTVDIVVTATGN  142 (542)
Q Consensus        79 tVvViG-~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v-----~~-l---~e~l~~aDvVi~atG~  142 (542)
                      +|+|+| .|.||+.+++.|...|.+|+++++++.+....  .++.+     .+ .   .++++++|+||.+.|.
T Consensus         2 ~ilItGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~--~~~~~~~~D~~d~~~~~~~~~~~~d~vi~~ag~   73 (219)
T 3dqp_A            2 KIFIVGSTGRVGKSLLKSLSTTDYQIYAGARKVEQVPQY--NNVKAVHFDVDWTPEEMAKQLHGMDAIINVSGS   73 (219)
T ss_dssp             EEEEESTTSHHHHHHHHHHTTSSCEEEEEESSGGGSCCC--TTEEEEECCTTSCHHHHHTTTTTCSEEEECCCC
T ss_pred             eEEEECCCCHHHHHHHHHHHHCCCEEEEEECCccchhhc--CCceEEEecccCCHHHHHHHHcCCCEEEECCcC
Confidence            689999 59999999999999999999999988654321  23322     23 2   3456889999998774

>1ml4_A Aspartate transcarbamoylase; beta pleated sheet, protein inhibitor complex, transferase; HET: PAL; 1.80A {Pyrococcus abyssi} SCOP: c.78.1.1 c.78.1.1

Probab=95.06  E-value=0.2  Score=50.95  Aligned_cols=126  Identities=18%  Similarity=0.218  Sum_probs=81.2

Q ss_pred             ccccceeecCch----hhhHHHHhHHHHHHHHHHHHHhhcCccccCcEEEEEcCC---hhHHHHHHHHHhCCCEEEEEeC
Q psy4626          36 KLTVPAMNVNDS----VTKTKFDNLYMCRESIIDSLKRSTDVMFGGKQVVLCGYG---EVGKGCCQSLKGLGCVIYITEI  108 (542)
Q Consensus        36 ~L~~PV~~vn~s----~~K~~fd~~~g~~~s~~~ai~r~~~~~l~GktVvViG~G---~IG~~vA~~l~~~Ga~Viv~d~  108 (542)
                      ...+||||.-+.    ++-.+.|-.         .+++..+ .+.|.+|+++|-|   ++....+..+..+|++|.++-+
T Consensus       120 ~~~vPVINag~g~~~HPtQ~LaDl~---------Ti~e~~g-~l~gl~va~vGD~~~~rva~Sl~~~~~~~G~~v~~~~P  189 (308)
T 1ml4_A          120 VAEVPVINAGDGSNQHPTQTLLDLY---------TIKKEFG-RIDGLKIGLLGDLKYGRTVHSLAEALTFYDVELYLISP  189 (308)
T ss_dssp             TCSSCEEEEEETTSCCHHHHHHHHH---------HHHHHSS-CSSSEEEEEESCTTTCHHHHHHHHHGGGSCEEEEEECC
T ss_pred             hCCCCEEeCccCCccCcHHHHHHHH---------HHHHHhC-CCCCeEEEEeCCCCcCchHHHHHHHHHHCCCEEEEECC
Confidence            456788886552    343333321         2333333 4789999999985   7889999999999999999854


Q ss_pred             Cchh-----hhhhhcCCce---eeCHHHHhcCCcEEEEcCCC---------------cccCCHHHHhccCCCeEEEeccC
Q psy4626         109 DPIC-----ALQACMDGFS---VVKLNEVIRTVDIVVTATGN---------------KNVVTREHMDKMKNGCVVCNMGH  165 (542)
Q Consensus       109 dp~r-----~~~A~~~G~~---v~~l~e~l~~aDvVi~atG~---------------~~lI~~e~l~~mk~GailvnvG~  165 (542)
                      ....     ...+...|..   ..+++++++++|+|.+..-.               ..-++.+.++.+|+++++.-++-
T Consensus       190 ~~~~~~~~~~~~~~~~g~~~~~~~d~~eav~~aDvvyt~~~q~er~~~~~~~~~~~~~y~v~~~ll~~a~~~ai~mH~lP  269 (308)
T 1ml4_A          190 ELLRMPRHIVEELREKGMKVVETTTLEDVIGKLDVLYVTRIQKERFPDEQEYLKVKGSYQVNLKVLEKAKDELRIMHPLP  269 (308)
T ss_dssp             GGGCCCHHHHHHHHHTTCCEEEESCTHHHHTTCSEEEECCCCGGGSSSHHHHHTTTTCCCBCTTGGGGSCTTCEEECCSC
T ss_pred             ccccCCHHHHHHHHHcCCeEEEEcCHHHHhcCCCEEEECCccccccCCHHHHHHHhcCcccCHHHHhhcCCCCEEECCCC
Confidence            3221     1123344543   24688999999999995421               23455666777777777776664


Q ss_pred             CCcccC
Q psy4626         166 SNTEID  171 (542)
Q Consensus       166 g~~eid  171 (542)
                      -..||+
T Consensus       270 rg~EI~  275 (308)
T 1ml4_A          270 RVDEIH  275 (308)
T ss_dssp             CSSSBC
T ss_pred             CCCeec
Confidence            334444

>2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD, oxidoreductase, structural genomics; HET: NAD; 2.00A {Pyrococcus horikoshii} SCOP: c.2.1.3 d.81.1.1

Probab=95.03  E-value=0.045  Score=56.13  Aligned_cols=83  Identities=27%  Similarity=0.272  Sum_probs=54.2

Q ss_pred             EEEEEcCChhHHHHHHHHHhC-CCEE-EEEeCCchhhhh-hhcCCce------------------e-eCHHHHhcCCcEE
Q psy4626          79 QVVLCGYGEVGKGCCQSLKGL-GCVI-YITEIDPICALQ-ACMDGFS------------------V-VKLNEVIRTVDIV  136 (542)
Q Consensus        79 tVvViG~G~IG~~vA~~l~~~-Ga~V-iv~d~dp~r~~~-A~~~G~~------------------v-~~l~e~l~~aDvV  136 (542)
                      +|+|+|+|.||+.+++.+... ++++ .++|+++.+... +...|+.                  + .+.++++.++|+|
T Consensus         4 rVgIiG~G~iG~~~~r~l~~~~~~elvav~d~~~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~~~v~~d~~~l~~~vDvV   83 (334)
T 2czc_A            4 KVGVNGYGTIGKRVAYAVTKQDDMELIGITKTKPDFEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDLLEKVDII   83 (334)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCTTEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHHTCCCSCBHHHHHTTCSEE
T ss_pred             EEEEEeEhHHHHHHHHHHhcCCCCEEEEEEcCCHHHHHHHHHhcCccccccccccceeccCCceEEcCcHHHhccCCCEE
Confidence            799999999999999999876 4565 456877655432 3344432                  1 2456777799999


Q ss_pred             EEcCCCcccCCHHHHhccCCCeEEEe
Q psy4626         137 VTATGNKNVVTREHMDKMKNGCVVCN  162 (542)
Q Consensus       137 i~atG~~~lI~~e~l~~mk~Gailvn  162 (542)
                      ++||++.--. ......++.|..++.
T Consensus        84 ~~aTp~~~h~-~~a~~~l~aGk~Vi~  108 (334)
T 2czc_A           84 VDATPGGIGA-KNKPLYEKAGVKAIF  108 (334)
T ss_dssp             EECCSTTHHH-HHHHHHHHHTCEEEE
T ss_pred             EECCCccccH-HHHHHHHHcCCceEe
Confidence            9998753111 122344566666653

>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A*

Probab=95.02  E-value=0.022  Score=55.65  Aligned_cols=64  Identities=16%  Similarity=0.299  Sum_probs=48.2

Q ss_pred             cCcEEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCcee-----eC---HHHHhcCCcEEEEcCCC
Q psy4626          76 GGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV-----VK---LNEVIRTVDIVVTATGN  142 (542)
Q Consensus        76 ~GktVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v-----~~---l~e~l~~aDvVi~atG~  142 (542)
                      .+++|+|.|. |.||+.+++.|...|.+|+++++++.+..   ..+...     .+   +.+++++.|+||.+.|.
T Consensus         2 ~~k~vlVTGasg~IG~~la~~L~~~G~~V~~~~r~~~~~~---~~~~~~~~~Dl~d~~~~~~~~~~~D~vi~~Ag~   74 (267)
T 3rft_A            2 AMKRLLVTGAAGQLGRVMRERLAPMAEILRLADLSPLDPA---GPNEECVQCDLADANAVNAMVAGCDGIVHLGGI   74 (267)
T ss_dssp             CEEEEEEESTTSHHHHHHHHHTGGGEEEEEEEESSCCCCC---CTTEEEEECCTTCHHHHHHHHTTCSEEEECCSC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhcCCEEEEEecCCcccc---CCCCEEEEcCCCCHHHHHHHHcCCCEEEECCCC
Confidence            4689999995 89999999999999999999998876532   122221     22   23556899999998764

>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP}

Probab=95.01  E-value=0.022  Score=54.23  Aligned_cols=63  Identities=13%  Similarity=0.093  Sum_probs=45.0

Q ss_pred             cEEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeC---HHHHhc----CCcEEEEcCCC
Q psy4626          78 KQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVK---LNEVIR----TVDIVVTATGN  142 (542)
Q Consensus        78 ktVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~---l~e~l~----~aDvVi~atG~  142 (542)
                      |+++|+|. |.||+.+++.|...|.+|+++++++.+...  ....++.+   ++++++    +.|+||.+.|.
T Consensus         2 k~vlVtGasg~iG~~l~~~L~~~g~~V~~~~r~~~~~~~--~~~~D~~~~~~~~~~~~~~~~~~d~vi~~Ag~   72 (255)
T 2dkn_A            2 SVIAITGSASGIGAALKELLARAGHTVIGIDRGQADIEA--DLSTPGGRETAVAAVLDRCGGVLDGLVCCAGV   72 (255)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSSEEC--CTTSHHHHHHHHHHHHHHHTTCCSEEEECCCC
T ss_pred             cEEEEeCCCcHHHHHHHHHHHhCCCEEEEEeCChhHccc--cccCCcccHHHHHHHHHHcCCCccEEEECCCC
Confidence            57999998 899999999999999999999988754321  01111222   223333    79999998774

>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*

Probab=95.01  E-value=0.039  Score=53.07  Aligned_cols=38  Identities=16%  Similarity=0.154  Sum_probs=34.0

Q ss_pred             cCcEEEEEcC-ChhHHHHHHHHHh-CCCEEEEEeCCchhh
Q psy4626          76 GGKQVVLCGY-GEVGKGCCQSLKG-LGCVIYITEIDPICA  113 (542)
Q Consensus        76 ~GktVvViG~-G~IG~~vA~~l~~-~Ga~Viv~d~dp~r~  113 (542)
                      .|++++|.|. |-||+.+++.|.. .|++|+++++++.+.
T Consensus         3 ~~k~vlITGasggIG~~~a~~L~~~~g~~V~~~~r~~~~~   42 (276)
T 1wma_A            3 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRG   42 (276)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHhcCCeEEEEeCChHHH
Confidence            5899999997 7899999999999 999999999987654

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=95.01  E-value=0.033  Score=55.88  Aligned_cols=64  Identities=22%  Similarity=0.326  Sum_probs=45.7

Q ss_pred             ccccCcEEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce-----eeC---HHHHhcCCcEEEEcCCC
Q psy4626          73 VMFGGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-----VVK---LNEVIRTVDIVVTATGN  142 (542)
Q Consensus        73 ~~l~GktVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~-----v~~---l~e~l~~aDvVi~atG~  142 (542)
                      ....+++|+|+|. |.||+.+++.|...|.+|+++++++..      .++.     +.+   +.+++.++|+||.+.+.
T Consensus        15 ~~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~------~~~~~~~~Dl~d~~~~~~~~~~~d~vih~A~~   87 (347)
T 4id9_A           15 VPRGSHMILVTGSAGRVGRAVVAALRTQGRTVRGFDLRPSG------TGGEEVVGSLEDGQALSDAIMGVSAVLHLGAF   87 (347)
T ss_dssp             ------CEEEETTTSHHHHHHHHHHHHTTCCEEEEESSCCS------SCCSEEESCTTCHHHHHHHHTTCSEEEECCCC
T ss_pred             cccCCCEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCCC------CCccEEecCcCCHHHHHHHHhCCCEEEECCcc
Confidence            3567899999998 999999999999999999999987653      1222     112   34567899999997763

>1b7g_O Protein (glyceraldehyde 3-phosphate dehydrogenase; archaea, hyperthermophIle, GAPDH, hyperthermophilic dehydrog oxidoreductase; 2.05A {Sulfolobus solfataricus} SCOP: c.2.1.3 d.81.1.1

Probab=94.99  E-value=0.05  Score=56.05  Aligned_cols=85  Identities=21%  Similarity=0.279  Sum_probs=53.1

Q ss_pred             EEEEEcCChhHHHHHHHHHhC-CCEEE-EEeCCchhhh-hhhcCCceee------------------CHHHHhcCCcEEE
Q psy4626          79 QVVLCGYGEVGKGCCQSLKGL-GCVIY-ITEIDPICAL-QACMDGFSVV------------------KLNEVIRTVDIVV  137 (542)
Q Consensus        79 tVvViG~G~IG~~vA~~l~~~-Ga~Vi-v~d~dp~r~~-~A~~~G~~v~------------------~l~e~l~~aDvVi  137 (542)
                      +|+|+|+|.||+.+++.+... +++++ ++|+++.+.. .+...|+.+.                  +.++++.++|+|+
T Consensus         3 kVgIiGaG~iG~~~~r~L~~~p~~elvav~d~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~v~v~~~~e~l~~~vDvV~   82 (340)
T 1b7g_O            3 NVAVNGYGTIGKRVADAIIKQPDMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEESGIPVAGTVEDLIKTSDIVV   82 (340)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCTTEEEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHHHTTTCCCCCCHHHHHHHCSEEE
T ss_pred             EEEEEecCHHHHHHHHHHHcCCCCEEEEEEcCChHHHHHHHHhcCcceecCcCHHHHhcccccccccCHhHhhcCCCEEE
Confidence            799999999999999998765 46654 4676655432 2333444332                  1223345799999


Q ss_pred             EcCCCcccCCHHHH-hccCCCeEEEeccC
Q psy4626         138 TATGNKNVVTREHM-DKMKNGCVVCNMGH  165 (542)
Q Consensus       138 ~atG~~~lI~~e~l-~~mk~GailvnvG~  165 (542)
                      +|||..-  ..+.. ..++.|+.++..|.
T Consensus        83 ~aTp~~~--s~~~a~~~~~aG~kvV~~sa  109 (340)
T 1b7g_O           83 DTTPNGV--GAQYKPIYLQLQRNAIFQGG  109 (340)
T ss_dssp             ECCSTTH--HHHHHHHHHHTTCEEEECTT
T ss_pred             ECCCCch--hHHHHHHHHHcCCeEEEeCC
Confidence            9987632  22222 23466776665553

>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A*

Probab=94.99  E-value=0.059  Score=52.31  Aligned_cols=41  Identities=17%  Similarity=0.181  Sum_probs=36.2

Q ss_pred             cccCcEEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCchhhh
Q psy4626          74 MFGGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICAL  114 (542)
Q Consensus        74 ~l~GktVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~  114 (542)
                      .+.||+++|.|. |-||+.+++.|...|++|+++++++.+..
T Consensus         4 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~   45 (263)
T 3ai3_A            4 GISGKVAVITGSSSGIGLAIAEGFAKEGAHIVLVARQVDRLH   45 (263)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHH
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHH
Confidence            467999999997 78999999999999999999999876543

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=94.98  E-value=0.025  Score=57.72  Aligned_cols=67  Identities=18%  Similarity=0.245  Sum_probs=46.5

Q ss_pred             CcEEEEEcCChhHHHHHHHHHhCCC--EEEEEeCCchhhhh-hh--cCCc------eee-CHHHHhcCCcEEEEcCCCc
Q psy4626          77 GKQVVLCGYGEVGKGCCQSLKGLGC--VIYITEIDPICALQ-AC--MDGF------SVV-KLNEVIRTVDIVVTATGNK  143 (542)
Q Consensus        77 GktVvViG~G~IG~~vA~~l~~~Ga--~Viv~d~dp~r~~~-A~--~~G~------~v~-~l~e~l~~aDvVi~atG~~  143 (542)
                      ..+|+|+|.|.+|..++..+...|.  +|..+|+++.++.. +.  .++.      .+. +..+++++||+||.+.|.+
T Consensus         7 ~~KI~IiGaG~vG~~~a~~l~~~~~~~ev~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~~~~~a~~~aDvVii~~g~p   85 (318)
T 1y6j_A            7 RSKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGDYSDVKDCDVIVVTAGAN   85 (318)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC--CGGGGTTCSEEEECCCC-
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHhHHhcCCeEEEECCHHHhCCCCEEEEcCCCC
Confidence            4589999999999999999998887  99999999865431 11  1121      111 2245689999999998754

>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A

Probab=94.98  E-value=0.069  Score=52.23  Aligned_cols=38  Identities=18%  Similarity=0.342  Sum_probs=33.4

Q ss_pred             cccCcEEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCch
Q psy4626          74 MFGGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPI  111 (542)
Q Consensus        74 ~l~GktVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp~  111 (542)
                      .+.||+++|.|. |-||+.+|+.|...|++|++++.++.
T Consensus        15 ~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~~~~~   53 (270)
T 3is3_A           15 RLDGKVALVTGSGRGIGAAVAVHLGRLGAKVVVNYANST   53 (270)
T ss_dssp             CCTTCEEEESCTTSHHHHHHHHHHHHTTCEEEEEESSCH
T ss_pred             CcCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCCH
Confidence            578999999998 57999999999999999999876543

>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}

Probab=94.96  E-value=0.066  Score=53.38  Aligned_cols=65  Identities=14%  Similarity=0.189  Sum_probs=45.7

Q ss_pred             cEEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceee-----C---HHHHhcCCcEEEEcCCC
Q psy4626          78 KQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVV-----K---LNEVIRTVDIVVTATGN  142 (542)
Q Consensus        78 ktVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~-----~---l~e~l~~aDvVi~atG~  142 (542)
                      .+|+|+|. |.||+.+++.|...|.+|+++++++.+.......++.++     +   +.++++++|+||.+.|.
T Consensus        14 M~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~l~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih~a~~   87 (342)
T 2x4g_A           14 VKYAVLGATGLLGHHAARAIRAAGHDLVLIHRPSSQIQRLAYLEPECRVAEMLDHAGLERALRGLDGVIFSAGY   87 (342)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEECTTSCGGGGGGGCCEEEECCTTCHHHHHHHTTTCSEEEEC---
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCEEEEEecChHhhhhhccCCeEEEEecCCCHHHHHHHHcCCCEEEECCcc
Confidence            48999996 999999999999999999999988765432112233322     2   23456789999988763

>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}

Probab=94.95  E-value=0.041  Score=54.10  Aligned_cols=66  Identities=21%  Similarity=0.276  Sum_probs=48.4

Q ss_pred             CcEEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCc-------hhhhhh---hcCCceee--C------HHHHhcCCcEEE
Q psy4626          77 GKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDP-------ICALQA---CMDGFSVV--K------LNEVIRTVDIVV  137 (542)
Q Consensus        77 GktVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp-------~r~~~A---~~~G~~v~--~------l~e~l~~aDvVi  137 (542)
                      +++|+|+|. |.||+.+++.|...|.+|++.++++       .+....   ...|+.++  +      +.++++++|+||
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~~~~~d~vi   81 (307)
T 2gas_A            2 ENKILILGPTGAIGRHIVWASIKAGNPTYALVRKTITAANPETKEELIDNYQSLGVILLEGDINDHETLVKAIKQVDIVI   81 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHHTCCEEEEECCSCCSSCHHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEE
T ss_pred             CcEEEEECCCchHHHHHHHHHHhCCCcEEEEECCCcccCChHHHHHHHHHHHhCCCEEEEeCCCCHHHHHHHHhCCCEEE
Confidence            568999997 9999999999999999999999886       332111   12354432  2      345678899999


Q ss_pred             EcCCC
Q psy4626         138 TATGN  142 (542)
Q Consensus       138 ~atG~  142 (542)
                      .+.|.
T Consensus        82 ~~a~~   86 (307)
T 2gas_A           82 CAAGR   86 (307)
T ss_dssp             ECSSS
T ss_pred             ECCcc
Confidence            98764

>3upl_A Oxidoreductase; rossmann fold, NADPH binding; 1.50A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} PDB: 3upy_A*

Probab=94.94  E-value=0.031  Score=59.85  Aligned_cols=85  Identities=18%  Similarity=0.267  Sum_probs=59.7

Q ss_pred             cEEEEEcCChhHHHHHHHHHhC-CCE-EEEEeCCchhhhhhhc-C-C----------------------ce-eeCHHHHh
Q psy4626          78 KQVVLCGYGEVGKGCCQSLKGL-GCV-IYITEIDPICALQACM-D-G----------------------FS-VVKLNEVI  130 (542)
Q Consensus        78 ktVvViG~G~IG~~vA~~l~~~-Ga~-Viv~d~dp~r~~~A~~-~-G----------------------~~-v~~l~e~l  130 (542)
                      -+|+|||+|.+|+..+..+... |++ +.++|+++.++..+.. . |                      .. +.+.++++
T Consensus        24 IRVGIIGaG~iG~~~~~~l~~~~~veLvAV~D~~~era~~~a~~~yG~~~~~~~~~~~~~i~~a~~~g~~~v~~D~eeLL  103 (446)
T 3upl_A           24 IRIGLIGAGEMGTDIVTQVARMQGIEVGALSARRLPNTFKAIRTAYGDEENAREATTESAMTRAIEAGKIAVTDDNDLIL  103 (446)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTSSSEEEEEEECSSTHHHHHHHHHHHSSSTTEEECSSHHHHHHHHHTTCEEEESCHHHHH
T ss_pred             eEEEEECChHHHHHHHHHHhhCCCcEEEEEEeCCHHHHHHHHHHhcCCccccccccchhhhhhhhccCCceEECCHHHHh
Confidence            4899999999999998887654 665 4568999988664422 1 3                      12 34677887


Q ss_pred             c--CCcEEEEcCCCcccCCHHHHhccCCCeEEEe
Q psy4626         131 R--TVDIVVTATGNKNVVTREHMDKMKNGCVVCN  162 (542)
Q Consensus       131 ~--~aDvVi~atG~~~lI~~e~l~~mk~Gailvn  162 (542)
                      .  +.|+|+++|+++..--.-.+..++.|.-++.
T Consensus       104 ~d~dIDaVviaTp~p~~H~e~a~~AL~AGKHVv~  137 (446)
T 3upl_A          104 SNPLIDVIIDATGIPEVGAETGIAAIRNGKHLVM  137 (446)
T ss_dssp             TCTTCCEEEECSCCHHHHHHHHHHHHHTTCEEEE
T ss_pred             cCCCCCEEEEcCCChHHHHHHHHHHHHcCCcEEe
Confidence            4  6899999998753211245677888887774

>3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, oxidoredu PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A

Probab=94.92  E-value=0.032  Score=57.30  Aligned_cols=82  Identities=21%  Similarity=0.182  Sum_probs=55.5

Q ss_pred             cEEEEEcCChhHHH-HHHHHHhC-CCEEE-EEeCCchhhhhhhcCCce-eeCHHHHhc--CCcEEEEcCCCcccCCHHHH
Q psy4626          78 KQVVLCGYGEVGKG-CCQSLKGL-GCVIY-ITEIDPICALQACMDGFS-VVKLNEVIR--TVDIVVTATGNKNVVTREHM  151 (542)
Q Consensus        78 ktVvViG~G~IG~~-vA~~l~~~-Ga~Vi-v~d~dp~r~~~A~~~G~~-v~~l~e~l~--~aDvVi~atG~~~lI~~e~l  151 (542)
                      -+|+|||+|.+|+. .+..++.. +++|+ ++|+++.+.. +...+.. +.++++++.  +.|+|+.||.+..-. .-..
T Consensus         6 ~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~-~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H~-~~~~   83 (358)
T 3gdo_A            6 IKVGILGYGLSGSVFHGPLLDVLDEYQISKIMTSRTEEVK-RDFPDAEVVHELEEITNDPAIELVIVTTPSGLHY-EHTM   83 (358)
T ss_dssp             EEEEEECCSHHHHHTTHHHHTTCTTEEEEEEECSCHHHHH-HHCTTSEEESSTHHHHTCTTCCEEEECSCTTTHH-HHHH
T ss_pred             ceEEEEccCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHHH-hhCCCCceECCHHHHhcCCCCCEEEEcCCcHHHH-HHHH
Confidence            38999999999986 67777665 77764 6898887632 2222444 457888885  799999998643211 2345


Q ss_pred             hccCCCeEEE
Q psy4626         152 DKMKNGCVVC  161 (542)
Q Consensus       152 ~~mk~Gailv  161 (542)
                      ..++.|.-++
T Consensus        84 ~al~aGkhVl   93 (358)
T 3gdo_A           84 ACIQAGKHVV   93 (358)
T ss_dssp             HHHHTTCEEE
T ss_pred             HHHHcCCeEE
Confidence            5666776554

>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*

Probab=94.92  E-value=0.054  Score=54.23  Aligned_cols=70  Identities=16%  Similarity=0.132  Sum_probs=49.5

Q ss_pred             ccccCcEEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCchhhhhh-hc-CCcee-----eC---HHHHhc--CCcEEEEc
Q psy4626          73 VMFGGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQA-CM-DGFSV-----VK---LNEVIR--TVDIVVTA  139 (542)
Q Consensus        73 ~~l~GktVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A-~~-~G~~v-----~~---l~e~l~--~aDvVi~a  139 (542)
                      ..+.|++|+|+|. |.||+.+++.|...|.+|+++++++...... .. .++.+     .+   ++++++  ++|+||.+
T Consensus        16 ~~~~~~~vlVTGasG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~l~~v~~~~~Dl~d~~~~~~~~~~~~~D~vih~   95 (330)
T 2pzm_A           16 PRGSHMRILITGGAGCLGSNLIEHWLPQGHEILVIDNFATGKREVLPPVAGLSVIEGSVTDAGLLERAFDSFKPTHVVHS   95 (330)
T ss_dssp             STTTCCEEEEETTTSHHHHHHHHHHGGGTCEEEEEECCSSSCGGGSCSCTTEEEEECCTTCHHHHHHHHHHHCCSEEEEC
T ss_pred             ccCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCccchhhhhccCCceEEEeeCCCHHHHHHHHhhcCCCEEEEC
Confidence            4578999999998 9999999999999999999999865432211 11 12221     12   234556  88999987


Q ss_pred             CCC
Q psy4626         140 TGN  142 (542)
Q Consensus       140 tG~  142 (542)
                      .|.
T Consensus        96 A~~   98 (330)
T 2pzm_A           96 AAA   98 (330)
T ss_dssp             CCC
T ss_pred             Ccc
Confidence            764

>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A*

Probab=94.92  E-value=0.055  Score=55.02  Aligned_cols=69  Identities=19%  Similarity=0.267  Sum_probs=51.2

Q ss_pred             cccCcEEEEEcC-ChhHHHHHHHHHhC-CC-EEEEEeCCchhhhhhh----cCCcee-----eC---HHHHhcCCcEEEE
Q psy4626          74 MFGGKQVVLCGY-GEVGKGCCQSLKGL-GC-VIYITEIDPICALQAC----MDGFSV-----VK---LNEVIRTVDIVVT  138 (542)
Q Consensus        74 ~l~GktVvViG~-G~IG~~vA~~l~~~-Ga-~Viv~d~dp~r~~~A~----~~G~~v-----~~---l~e~l~~aDvVi~  138 (542)
                      .+.|++|+|+|. |.||+.+++.|... |. +|+++++++.+.....    ..+..+     .+   +.++++++|+||.
T Consensus        18 ~~~~k~vlVTGatG~iG~~l~~~L~~~~g~~~V~~~~r~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~D~Vih   97 (344)
T 2gn4_A           18 MLDNQTILITGGTGSFGKCFVRKVLDTTNAKKIIVYSRDELKQSEMAMEFNDPRMRFFIGDVRDLERLNYALEGVDICIH   97 (344)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHHCCCSEEEEEESCHHHHHHHHHHHCCTTEEEEECCTTCHHHHHHHTTTCSEEEE
T ss_pred             hhCCCEEEEECCCcHHHHHHHHHHHhhCCCCEEEEEECChhhHHHHHHHhcCCCEEEEECCCCCHHHHHHHHhcCCEEEE
Confidence            467999999996 99999999999998 98 9999999876543211    123322     12   2355688999999


Q ss_pred             cCCC
Q psy4626         139 ATGN  142 (542)
Q Consensus       139 atG~  142 (542)
                      +.|.
T Consensus        98 ~Aa~  101 (344)
T 2gn4_A           98 AAAL  101 (344)
T ss_dssp             CCCC
T ss_pred             CCCC
Confidence            8764

>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*

Probab=94.91  E-value=0.06  Score=54.29  Aligned_cols=69  Identities=16%  Similarity=0.101  Sum_probs=49.0

Q ss_pred             cccCcEEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCchh----hhhhh-------cCCceee--C------HHHHhcCC
Q psy4626          74 MFGGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPIC----ALQAC-------MDGFSVV--K------LNEVIRTV  133 (542)
Q Consensus        74 ~l~GktVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp~r----~~~A~-------~~G~~v~--~------l~e~l~~a  133 (542)
                      .+.+++|+|+|+ |.||+.+++.|...|.+|+++++++..    .....       ..++.++  +      +.++++++
T Consensus        24 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~  103 (352)
T 1sb8_A           24 PAQPKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNNACAGV  103 (352)
T ss_dssp             HHSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSHHHHHHHHTTC
T ss_pred             CccCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCccchhhHHHHhhhcccccCCceEEEECCCCCHHHHHHHhcCC
Confidence            356899999999 999999999999999999999986531    11100       1233321  2      23456789


Q ss_pred             cEEEEcCCC
Q psy4626         134 DIVVTATGN  142 (542)
Q Consensus       134 DvVi~atG~  142 (542)
                      |+||.+.|.
T Consensus       104 d~vih~A~~  112 (352)
T 1sb8_A          104 DYVLHQAAL  112 (352)
T ss_dssp             SEEEECCSC
T ss_pred             CEEEECCcc
Confidence            999998764

>3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*

Probab=94.90  E-value=0.055  Score=51.58  Aligned_cols=41  Identities=20%  Similarity=0.365  Sum_probs=36.4

Q ss_pred             cccCcEEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCchhhh
Q psy4626          74 MFGGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICAL  114 (542)
Q Consensus        74 ~l~GktVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~  114 (542)
                      .+.|++++|.|. |.||+.+++.|...|++|+++++++.+..
T Consensus         4 ~l~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~   45 (244)
T 3d3w_A            4 FLAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLD   45 (244)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH
T ss_pred             ccCCcEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence            367999999998 79999999999999999999998876543

>2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A*

Probab=94.87  E-value=0.093  Score=53.06  Aligned_cols=64  Identities=17%  Similarity=0.114  Sum_probs=45.9

Q ss_pred             EEEEEcCChhHHHHHHHHHhCCC--EEEEEeCCchhhh-hhhc-------CCc--ee--eCHHHHhcCCcEEEEcCCC
Q psy4626          79 QVVLCGYGEVGKGCCQSLKGLGC--VIYITEIDPICAL-QACM-------DGF--SV--VKLNEVIRTVDIVVTATGN  142 (542)
Q Consensus        79 tVvViG~G~IG~~vA~~l~~~Ga--~Viv~d~dp~r~~-~A~~-------~G~--~v--~~l~e~l~~aDvVi~atG~  142 (542)
                      +|.|+|+|.||..+|..+...|.  ++..+|+++.++. +|..       .+.  .+  .+.-+.+++||+||.+.|.
T Consensus         2 KV~IiGaG~VG~~~a~~l~~~~~~~el~L~Di~~~~~~G~a~DL~h~~~~~~~~~~i~~~~d~~~~~~aDvVvitAG~   79 (294)
T 2x0j_A            2 KLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGADYSLLKGSEIIVVTAGL   79 (294)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHGGGTCCCEEEEESCGGGGTTCSEEEECCCC
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCCCcchhhhhhhhcccccCCCCCeEecCCCHHHhCCCCEEEEecCC
Confidence            79999999999999999887775  8999999885532 1211       111  11  1223568999999998873

>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*

Probab=94.85  E-value=0.062  Score=51.77  Aligned_cols=41  Identities=17%  Similarity=0.227  Sum_probs=36.1

Q ss_pred             cccCcEEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCchhhh
Q psy4626          74 MFGGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICAL  114 (542)
Q Consensus        74 ~l~GktVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~  114 (542)
                      .+.|++++|+|. |.||+.+++.|...|++|+++++++.+..
T Consensus         9 ~~~~k~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~   50 (265)
T 2o23_A            9 SVKGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGE   50 (265)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSSHH
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCcHhHH
Confidence            467999999998 68999999999999999999998876543

>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides}

Probab=94.85  E-value=0.029  Score=55.16  Aligned_cols=69  Identities=19%  Similarity=0.266  Sum_probs=48.6

Q ss_pred             cccCcEEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHH---HH-------hcCCcEEEEcCCC
Q psy4626          74 MFGGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLN---EV-------IRTVDIVVTATGN  142 (542)
Q Consensus        74 ~l~GktVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~---e~-------l~~aDvVi~atG~  142 (542)
                      .+.||+++|.|. |-||+.+|+.|...|++|+++++++...........++.+.+   ++       +...|++|.+.|.
T Consensus        25 ~l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~iD~lvnnAg~  104 (266)
T 3uxy_A           25 GFEGKVALVTGAAGGIGGAVVTALRAAGARVAVADRAVAGIAADLHLPGDLREAAYADGLPGAVAAGLGRLDIVVNNAGV  104 (266)
T ss_dssp             -CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEECSSCCTTSCCSEECCCCTTSHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHhhhccCcCCCCHHHHHHHHHHHHHhcCCCCEEEECCCC
Confidence            467999999998 579999999999999999999987755432222122233322   11       2478999998763

>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*

Probab=94.85  E-value=0.051  Score=56.12  Aligned_cols=37  Identities=22%  Similarity=0.336  Sum_probs=34.0

Q ss_pred             cccCcEEEEEcCChhHHHHHHHHHhCCC-EEEEEeCCc
Q psy4626          74 MFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDP  110 (542)
Q Consensus        74 ~l~GktVvViG~G~IG~~vA~~l~~~Ga-~Viv~d~dp  110 (542)
                      .+.+++|+|+|+|.+|..+|+.|...|+ +++++|.|.
T Consensus        31 kL~~~~VlIvGaGGlGs~va~~La~aGVg~ItlvD~D~   68 (340)
T 3rui_A           31 IIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGT   68 (340)
T ss_dssp             HHHTCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCB
T ss_pred             HHhCCEEEEECCCHHHHHHHHHHHHcCCCEEEEecCCE
Confidence            4679999999999999999999999998 899998765

>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A

Probab=94.84  E-value=0.053  Score=52.65  Aligned_cols=42  Identities=24%  Similarity=0.366  Sum_probs=36.9

Q ss_pred             cccCcEEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCchhhhh
Q psy4626          74 MFGGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQ  115 (542)
Q Consensus        74 ~l~GktVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~  115 (542)
                      .+.||+++|.|. |-||+.+|+.|...|++|+++++++.+..+
T Consensus         5 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~   47 (259)
T 4e6p_A            5 RLEGKSALITGSARGIGRAFAEAYVREGATVAIADIDIERARQ   47 (259)
T ss_dssp             TTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHH
T ss_pred             cCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence            367999999997 689999999999999999999998876543

>1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A*

Probab=94.82  E-value=0.029  Score=54.02  Aligned_cols=64  Identities=17%  Similarity=0.204  Sum_probs=44.7

Q ss_pred             cEEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeC---HHHHhc----CCcEEEEcCCCc
Q psy4626          78 KQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVK---LNEVIR----TVDIVVTATGNK  143 (542)
Q Consensus        78 ktVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~---l~e~l~----~aDvVi~atG~~  143 (542)
                      |+++|.|. |-||+.+++.|...|++|+++++++.+...  ....++.+   ++++++    ..|++|.+.|..
T Consensus         2 k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~--~~~~Dl~~~~~v~~~~~~~~~~id~lv~~Ag~~   73 (257)
T 1fjh_A            2 SIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDAEVIA--DLSTAEGRKQAIADVLAKCSKGMDGLVLCAGLG   73 (257)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSSEEC--CTTSHHHHHHHHHHHHTTCTTCCSEEEECCCCC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCchhhcc--ccccCCCCHHHHHHHHHHhCCCCCEEEECCCCC
Confidence            57999997 689999999999999999999988754321  11112222   223343    459999988743

>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D

Probab=94.82  E-value=0.025  Score=55.10  Aligned_cols=65  Identities=18%  Similarity=0.160  Sum_probs=47.7

Q ss_pred             cEEEEEcC-ChhHHHHHHHHHhC--CCEEEEEeCCchhhhhhhcCCceee-----C---HHHHhcCCcEEEEcCCC
Q psy4626          78 KQVVLCGY-GEVGKGCCQSLKGL--GCVIYITEIDPICALQACMDGFSVV-----K---LNEVIRTVDIVVTATGN  142 (542)
Q Consensus        78 ktVvViG~-G~IG~~vA~~l~~~--Ga~Viv~d~dp~r~~~A~~~G~~v~-----~---l~e~l~~aDvVi~atG~  142 (542)
                      ++|+|+|. |.||+.+++.|...  |.+|+++++++.+.......++.++     +   +.++++++|+||.+.+.
T Consensus         1 ~~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~l~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~a~~   76 (287)
T 2jl1_A            1 FSIAVTGATGQLGGLVIQHLLKKVPASQIIAIVRNVEKASTLADQGVEVRHGDYNQPESLQKAFAGVSKLLFISGP   76 (287)
T ss_dssp             CCEEETTTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTTHHHHHTTCEEEECCTTCHHHHHHHTTTCSEEEECCCC
T ss_pred             CeEEEEcCCchHHHHHHHHHHHhCCCCeEEEEEcCHHHHhHHhhcCCeEEEeccCCHHHHHHHHhcCCEEEEcCCC
Confidence            46899998 99999999999988  9999999988765432222343322     2   33567889999988764

>2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043}

Probab=94.80  E-value=0.041  Score=55.75  Aligned_cols=83  Identities=13%  Similarity=0.170  Sum_probs=57.3

Q ss_pred             cEEEEEcCChhHH-HHHHHHHhCCCEE-EEEeCCchhhhh-hhcC-Cce-eeCHHHHhc--CCcEEEEcCCCcccCCHHH
Q psy4626          78 KQVVLCGYGEVGK-GCCQSLKGLGCVI-YITEIDPICALQ-ACMD-GFS-VVKLNEVIR--TVDIVVTATGNKNVVTREH  150 (542)
Q Consensus        78 ktVvViG~G~IG~-~vA~~l~~~Ga~V-iv~d~dp~r~~~-A~~~-G~~-v~~l~e~l~--~aDvVi~atG~~~lI~~e~  150 (542)
                      -+|+|||+|.+|. ..+..++..|+++ .++|+++.++.. +... +.. +.+.++++.  +.|+|+.||.+..-. ...
T Consensus         5 ~rvgiiG~G~~~~~~~~~~l~~~~~~lvav~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~-~~~   83 (336)
T 2p2s_A            5 IRFAAIGLAHNHIYDMCQQLIDAGAELAGVFESDSDNRAKFTSLFPSVPFAASAEQLITDASIDLIACAVIPCDRA-ELA   83 (336)
T ss_dssp             CEEEEECCSSTHHHHHHHHHHHTTCEEEEEECSCTTSCHHHHHHSTTCCBCSCHHHHHTCTTCCEEEECSCGGGHH-HHH
T ss_pred             cEEEEECCChHHHHHhhhhhcCCCcEEEEEeCCCHHHHHHHHHhcCCCcccCCHHHHhhCCCCCEEEEeCChhhHH-HHH
Confidence            3799999999996 5677777778985 678999987653 3333 333 457888885  699999997643212 234


Q ss_pred             HhccCCCe-EEE
Q psy4626         151 MDKMKNGC-VVC  161 (542)
Q Consensus       151 l~~mk~Ga-ilv  161 (542)
                      ...++.|. +++
T Consensus        84 ~~al~aGkhVl~   95 (336)
T 2p2s_A           84 LRTLDAGKDFFT   95 (336)
T ss_dssp             HHHHHTTCEEEE
T ss_pred             HHHHHCCCcEEE
Confidence            55677776 444

>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2

Probab=94.79  E-value=0.059  Score=52.11  Aligned_cols=39  Identities=21%  Similarity=0.348  Sum_probs=34.5

Q ss_pred             ccccCcEEEEEcC---ChhHHHHHHHHHhCCCEEEEEeCCch
Q psy4626          73 VMFGGKQVVLCGY---GEVGKGCCQSLKGLGCVIYITEIDPI  111 (542)
Q Consensus        73 ~~l~GktVvViG~---G~IG~~vA~~l~~~Ga~Viv~d~dp~  111 (542)
                      ..+.+|+++|.|.   |.||+.+|+.|...|++|+++++++.
T Consensus        10 ~~~~~k~vlITGa~~~~giG~~ia~~l~~~G~~V~~~~r~~~   51 (271)
T 3ek2_A           10 GFLDGKRILLTGLLSNRSIAYGIAKACKREGAELAFTYVGDR   51 (271)
T ss_dssp             CTTTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSGG
T ss_pred             cccCCCEEEEeCCCCCCcHHHHHHHHHHHcCCCEEEEecchh
Confidence            3578999999996   58999999999999999999988753

>1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2

Probab=94.79  E-value=0.072  Score=51.34  Aligned_cols=68  Identities=18%  Similarity=0.170  Sum_probs=48.3

Q ss_pred             ccCcEEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCchhhhhhh-cCCcee-----eCHH---HHh-------cCCcEEE
Q psy4626          75 FGGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQAC-MDGFSV-----VKLN---EVI-------RTVDIVV  137 (542)
Q Consensus        75 l~GktVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~-~~G~~v-----~~l~---e~l-------~~aDvVi  137 (542)
                      +.|++++|.|. |-||+.+++.|...|++|+++++++.+..... ..|...     .+.+   +++       ...|++|
T Consensus         3 l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~lv   82 (245)
T 1uls_A            3 LKDKAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAAEAVGAHPVVMDVADPASVERGFAEALAHLGRLDGVV   82 (245)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTTCEEEECCTTCHHHHHHHHHHHHHHHSSCCEEE
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCEEEEecCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence            56899999998 68999999999999999999999886654322 223322     1221   222       3579998


Q ss_pred             EcCCC
Q psy4626         138 TATGN  142 (542)
Q Consensus       138 ~atG~  142 (542)
                      .+.|.
T Consensus        83 n~Ag~   87 (245)
T 1uls_A           83 HYAGI   87 (245)
T ss_dssp             ECCCC
T ss_pred             ECCCC
Confidence            87763

>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2

Probab=94.78  E-value=0.062  Score=51.09  Aligned_cols=41  Identities=15%  Similarity=0.272  Sum_probs=36.4

Q ss_pred             cccCcEEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCchhhh
Q psy4626          74 MFGGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICAL  114 (542)
Q Consensus        74 ~l~GktVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~  114 (542)
                      .+.|++++|.|. |-||+.+++.|...|++|+++++++.+..
T Consensus         4 ~~~~~~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~   45 (244)
T 1cyd_A            4 NFSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLV   45 (244)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence            467999999998 79999999999999999999999876543

>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A*

Probab=94.78  E-value=0.056  Score=52.40  Aligned_cols=40  Identities=15%  Similarity=0.279  Sum_probs=35.9

Q ss_pred             ccCcEEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCchhhh
Q psy4626          75 FGGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICAL  114 (542)
Q Consensus        75 l~GktVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~  114 (542)
                      +.|++++|.|. |-||+.+++.|...|++|+++++++.+..
T Consensus         3 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~   43 (254)
T 1hdc_A            3 LSGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGA   43 (254)
T ss_dssp             CCCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence            57999999998 78999999999999999999999886554

>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}

Probab=94.77  E-value=0.077  Score=52.37  Aligned_cols=41  Identities=15%  Similarity=0.240  Sum_probs=36.6

Q ss_pred             cccCcEEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCchhhh
Q psy4626          74 MFGGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICAL  114 (542)
Q Consensus        74 ~l~GktVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~  114 (542)
                      .+.||+++|.|. |-||+.+|+.|...|++|+++++++.+..
T Consensus        29 ~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~   70 (276)
T 3r1i_A           29 DLSGKRALITGASTGIGKKVALAYAEAGAQVAVAARHSDALQ   70 (276)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSGGGGH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence            578999999998 67999999999999999999999876543

>2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A*

Probab=94.74  E-value=0.067  Score=54.72  Aligned_cols=69  Identities=16%  Similarity=0.145  Sum_probs=49.9

Q ss_pred             cccCcEEEEEcC-ChhHHHHHHHHHhCC-CEEEEEeCCchhhhhhh--cCCceee-----C---HHHHhcCCcEEEEcCC
Q psy4626          74 MFGGKQVVLCGY-GEVGKGCCQSLKGLG-CVIYITEIDPICALQAC--MDGFSVV-----K---LNEVIRTVDIVVTATG  141 (542)
Q Consensus        74 ~l~GktVvViG~-G~IG~~vA~~l~~~G-a~Viv~d~dp~r~~~A~--~~G~~v~-----~---l~e~l~~aDvVi~atG  141 (542)
                      .+.+++|+|+|. |.||+.+++.|...| .+|+++++++.......  ..++.++     +   ++++++++|+||.+.|
T Consensus        29 ~~~~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~l~~~~~v~~~~~Dl~d~~~l~~~~~~~d~Vih~A~  108 (377)
T 2q1s_A           29 KLANTNVMVVGGAGFVGSNLVKRLLELGVNQVHVVDNLLSAEKINVPDHPAVRFSETSITDDALLASLQDEYDYVFHLAT  108 (377)
T ss_dssp             GGTTCEEEEETTTSHHHHHHHHHHHHTTCSEEEEECCCTTCCGGGSCCCTTEEEECSCTTCHHHHHHCCSCCSEEEECCC
T ss_pred             HhCCCEEEEECCccHHHHHHHHHHHHcCCceEEEEECCCCCchhhccCCCceEEEECCCCCHHHHHHHhhCCCEEEECCC
Confidence            467899999997 999999999999999 99999998765422111  1233322     2   2345678999999876


Q ss_pred             C
Q psy4626         142 N  142 (542)
Q Consensus       142 ~  142 (542)
                      .
T Consensus       109 ~  109 (377)
T 2q1s_A          109 Y  109 (377)
T ss_dssp             C
T ss_pred             c
Confidence            4

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	542
d1v8ba1	163	c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolas	7e-68
d1v8ba1	163	c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolas	6e-32
d1li4a1	163	c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolas	8e-61
d1li4a1	163	c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolas	5e-28
d1li4a2	267	c.23.12.3 (A:3-189,A:353-432) S-adenosylhomocystei	1e-39
d1li4a2	267	c.23.12.3 (A:3-189,A:353-432) S-adenosylhomocystei	8e-27
d1li4a2	267	c.23.12.3 (A:3-189,A:353-432) S-adenosylhomocystei	3e-11
d1li4a2	267	c.23.12.3 (A:3-189,A:353-432) S-adenosylhomocystei	6e-10
d1v8ba2	313	c.23.12.3 (A:4-234,A:398-479) S-adenosylhomocystei	3e-32
d1v8ba2	313	c.23.12.3 (A:4-234,A:398-479) S-adenosylhomocystei	2e-22
d1v8ba2	313	c.23.12.3 (A:4-234,A:398-479) S-adenosylhomocystei	3e-11
d1v8ba2	313	c.23.12.3 (A:4-234,A:398-479) S-adenosylhomocystei	6e-06
d2fy8a1	129	c.2.1.9 (A:116-244) Potassium channel-related prot	4e-05
d1id1a_	153	c.2.1.9 (A:) Rck domain from putative potassium ch	5e-05
d1c1da1	201	c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {R	2e-04
d2hmva1	134	c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [T	4e-04
d1leha1	230	c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillu	0.003
d1edza1	171	c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehy	0.004

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]} Length = 163

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

 Score =  214 bits (546), Expect = 7e-68
 Identities = 85/161 (52%), Positives = 114/161 (70%), Gaps = 1/161 (0%)

Query: 55  NLYMCRESIIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICAL 114
           N+Y CR S+ D L R+TD +  GK VV+CGYG+VGKGC  S+KGLG  +YITEIDPICA+
Sbjct: 1   NVYGCRHSLPDGLMRATDFLISGKIVVICGYGDVGKGCASSMKGLGARVYITEIDPICAI 60

Query: 115 QACMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNS 174
           QA M+GF+VV L+E++   D  +T TGN +V+  EH+ KMKN  VV N+GH + EI VN 
Sbjct: 61  QAVMEGFNVVTLDEIVDKGDFFITCTGNVDVIKLEHLLKMKNNAVVGNIGHFDDEIQVNE 120

Query: 175 LRT-PDLTWEKVRSQVDHVIWPDGKRIVLLAEGRLVNLSCS 214
           L     +  E V+ QVD +  P+G +I++LA GRL+NL C+
Sbjct: 121 LFNYKGIHIENVKPQVDRITLPNGNKIIVLARGRLLNLGCA 161

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]} Length = 163

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

 Score =  118 bits (297), Expect = 6e-32
 Identities = 45/99 (45%), Positives = 65/99 (65%), Gaps = 1/99 (1%)

Query: 295 SMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLR 354
            M+GF+VV L+E++   D  +T TGN +V+  EH+ KMKN  VV N+GH + EI VN L 
Sbjct: 63  VMEGFNVVTLDEIVDKGDFFITCTGNVDVIKLEHLLKMKNNAVVGNIGHFDDEIQVNELF 122

Query: 355 T-PDLTWEKVRSQVDHVIWPDGKRIVLLAEGRLVNLSCS 392
               +  E V+ QVD +  P+G +I++LA GRL+NL C+
Sbjct: 123 NYKGIHIENVKPQVDRITLPNGNKIIVLARGRLLNLGCA 161

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} Length = 163

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  195 bits (498), Expect = 8e-61
 Identities = 81/161 (50%), Positives = 111/161 (68%)

Query: 54  DNLYMCRESIIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICA 113
           DNLY CRES+ID +KR+TDVM  GK  V+ GYG+VGKGC Q+L+G G  + ITEIDPI A
Sbjct: 1   DNLYGCRESLIDGIKRATDVMIAGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDPINA 60

Query: 114 LQACMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVN 173
           LQA M+G+ V  ++E  +  +I VT TG  +++   H ++MK+  +VCN+GH + EIDV 
Sbjct: 61  LQAAMEGYEVTTMDEACQEGNIFVTTTGCIDIILGRHFEQMKDDAIVCNIGHFDVEIDVK 120

Query: 174 SLRTPDLTWEKVRSQVDHVIWPDGKRIVLLAEGRLVNLSCS 214
            L    +    ++ QVD     +G+RI+LLAEGRLVNL C+
Sbjct: 121 WLNENAVEKVNIKPQVDRYRLKNGRRIILLAEGRLVNLGCA 161

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} Length = 163

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  107 bits (269), Expect = 5e-28
 Identities = 39/97 (40%), Positives = 61/97 (62%)

Query: 296 MDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRT 355
           M+G+ V  ++E  +  +I VT TG  +++   H ++MK+  +VCN+GH + EIDV  L  
Sbjct: 65  MEGYEVTTMDEACQEGNIFVTTTGCIDIILGRHFEQMKDDAIVCNIGHFDVEIDVKWLNE 124

Query: 356 PDLTWEKVRSQVDHVIWPDGKRIVLLAEGRLVNLSCS 392
             +    ++ QVD     +G+RI+LLAEGRLVNL C+
Sbjct: 125 NAVEKVNIKPQVDRYRLKNGRRIILLAEGRLVNLGCA 161

>d1li4a2 c.23.12.3 (A:3-189,A:353-432) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} Length = 267

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: S-adenosylhomocystein hydrolase
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  143 bits (361), Expect = 1e-39
 Identities = 52/109 (47%), Positives = 74/109 (67%), Gaps = 2/109 (1%)

Query: 435 SYTGLPVFAWRGETEEDFWWCIDKCVN--SWQPNMILDDGGDATHWMLKKYPTMFKAIKG 492
           +  G+PV+AW+GET+E++ WCI++ +       NMILDDGGD T+ +  KYP +   I+G
Sbjct: 91  AKAGIPVYAWKGETDEEYLWCIEQTLYFKDGPLNMILDDGGDLTNLIHTKYPQLLPGIRG 150

Query: 493 IVEESLTGVHRLYQLSKAGKLTVPAMNVNDSVTKTKFDNLYMCRESIID 541
           I EE+ TGVH LY++   G L VPA+NVNDSVTK+KF   ++   S  +
Sbjct: 151 ISEETTTGVHNLYKMMANGILKVPAINVNDSVTKSKFHPSFVMSNSFTN 199

>d1li4a2 c.23.12.3 (A:3-189,A:353-432) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} Length = 267

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: S-adenosylhomocystein hydrolase
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  107 bits (268), Expect = 8e-27
 Identities = 36/78 (46%), Positives = 53/78 (67%), Gaps = 1/78 (1%)

Query: 217 PSFVVSITACTQALALIELFNAPSGRYKSDVYLLPKKMDEYVASLHLPTFDAHLTELSDE 276
           PSFV+S +   Q +A IEL+  P  +Y   V+ LPKK+DE VA  HL   +  LT+L+++
Sbjct: 189 PSFVMSNSFTNQVMAQIELWTHP-DKYPVGVHFLPKKLDEAVAEAHLGKLNVKLTKLTEK 247

Query: 277 QAKYMGLNKAGPFKPSYY 294
           QA+Y+G++  GPFKP +Y
Sbjct: 248 QAQYLGMSCDGPFKPDHY 265

>d1li4a2 c.23.12.3 (A:3-189,A:353-432) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} Length = 267

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: S-adenosylhomocystein hydrolase
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.8 bits (150), Expect = 3e-11
 Identities = 25/104 (24%), Positives = 41/104 (39%), Gaps = 9/104 (8%)

Query: 24  GCTHINAQTAAGKLTVPAMNVNDSVTKTKFDNLYMCRESIIDSLKRSTDVMFGGKQVVLC 83
           G  ++    A G L VPA+NVNDSVTK+KF   ++   S  + +    ++     +  + 
Sbjct: 158 GVHNLYKMMANGILKVPAINVNDSVTKSKFHPSFVMSNSFTNQVMAQIELWTHPDKYPVG 217

Query: 84  GYGEVGKGCCQS----LKGLGCVIYITEIDPICALQACMDGFSV 123
            +    K         L  L       ++  +   QA   G S 
Sbjct: 218 VHFLPKKLDEAVAEAHLGKLNV-----KLTKLTEKQAQYLGMSC 256

>d1li4a2 c.23.12.3 (A:3-189,A:353-432) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} Length = 267

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: S-adenosylhomocystein hydrolase
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.9 bits (140), Expect = 6e-10
 Identities = 18/33 (54%), Positives = 23/33 (69%)

Query: 1  MPGIMALRKRAGDDKPLKNARIVGCTHINAQTA 33
          MPG+M +R+R    KPLK ARI GC H+  +TA
Sbjct: 27 MPGLMRMRERYSASKPLKGARIAGCLHMTVETA 59

>d1v8ba2 c.23.12.3 (A:4-234,A:398-479) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: S-adenosylhomocystein hydrolase
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

 Score =  124 bits (312), Expect = 3e-32
 Identities = 37/79 (46%), Positives = 55/79 (69%), Gaps = 1/79 (1%)

Query: 217 PSFVVSITACTQALALIELF-NAPSGRYKSDVYLLPKKMDEYVASLHLPTFDAHLTELSD 275
           P+FV+S + C Q  A ++L+ N  + +Y++ VYLLPK +DE VA  HL   +A LTEL D
Sbjct: 233 PAFVMSFSFCNQTFAQLDLWQNKDTNKYENKVYLLPKHLDEKVALYHLKKLNASLTELDD 292

Query: 276 EQAKYMGLNKAGPFKPSYY 294
            Q +++G+NK+GPFK + Y
Sbjct: 293 NQCQFLGVNKSGPFKSNEY 311

>d1v8ba2 c.23.12.3 (A:4-234,A:398-479) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: S-adenosylhomocystein hydrolase
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

 Score = 96.1 bits (239), Expect = 2e-22
 Identities = 45/154 (29%), Positives = 68/154 (44%), Gaps = 52/154 (33%)

Query: 438 GLPVFAWRGETEEDFWWCIDKCVN-----SWQPNMILDDGGDATHWML------------ 480
            + VFAW+ ET E++WWC++  +         P+MI+DDGGDAT  +             
Sbjct: 93  NVTVFAWKNETLEEYWWCVESALTWGDGDDNGPDMIVDDGGDATLLVHKGVEYEKLYEEK 152

Query: 481 -----------------------------KKYPTMFKAIKGIVEESLTGVHRLYQLSKAG 511
                                        KK+  + K I G+ EE+ TGV RL ++ K  
Sbjct: 153 NILPDPEKAKNEEERCFLTLLKNSILKNPKKWTNIAKKIIGVSEETTTGVLRLKKMDKQN 212

Query: 512 KLTVPAMNVNDSVTKTKFDN------LYMCRESI 539
           +L   A+NVND+VTK K+D+         C ++ 
Sbjct: 213 ELLFTAINVNDAVTKQKYDHPAFVMSFSFCNQTF 246

>d1v8ba2 c.23.12.3 (A:4-234,A:398-479) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: S-adenosylhomocystein hydrolase
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

 Score = 62.6 bits (152), Expect = 3e-11
 Identities = 17/33 (51%), Positives = 24/33 (72%)

Query: 1  MPGIMALRKRAGDDKPLKNARIVGCTHINAQTA 33
          MPG+M +R+  G D+PLKNA+I GC H+  + A
Sbjct: 25 MPGLMRIREEYGKDQPLKNAKITGCLHMTVECA 57

>d1v8ba2 c.23.12.3 (A:4-234,A:398-479) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: S-adenosylhomocystein hydrolase
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

 Score = 46.0 bits (109), Expect = 6e-06
 Identities = 24/120 (20%), Positives = 43/120 (35%), Gaps = 21/120 (17%)

Query: 4   IMALRKRAGDDKPLK----NARIVGCTHI--------NAQTAAGKLTVPAMNVNDSVTKT 51
            + L K +    P K      +I+G +                 +L   A+NVND+VTK 
Sbjct: 169 FLTLLKNSILKNPKKWTNIAKKIIGVSEETTTGVLRLKKMDKQNELLFTAINVNDAVTKQ 228

Query: 52  KFDN------LYMCRESI--IDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVI 103
           K+D+         C ++   +D  +      +  K  +L  + +        LK L   +
Sbjct: 229 KYDHPAFVMSFSFCNQTFAQLDLWQNKDTNKYENKVYLLPKHLDEKVALYH-LKKLNASL 287

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} Length = 129

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

 Score = 41.0 bits (95), Expect = 4e-05
 Identities = 21/128 (16%), Positives = 41/128 (32%), Gaps = 20/128 (15%)

Query: 78  KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVK---------LNE 128
           + VV+CG+ E    C + L+G    +++   D     +    G + V             
Sbjct: 1   RHVVICGWSESTLECLRELRGSE--VFVLAEDENVRKKVLRSGANFVHGDPTRVSDLEKA 58

Query: 129 VIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQ 188
            +R    V+    + +      +   K    V  +  +    ++  LR          + 
Sbjct: 59  NVRGARAVIVNLESDSETIHCILGIRKIDESVRIIAEAERYENIEQLR---------MAG 109

Query: 189 VDHVIWPD 196
            D VI P 
Sbjct: 110 ADQVISPF 117

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} Length = 153

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

 Score = 41.4 bits (96), Expect = 5e-05
 Identities = 15/147 (10%), Positives = 40/147 (27%), Gaps = 25/147 (17%)

Query: 80  VVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQA------------CMDGFSVVKLN 127
            ++CG+  +       L   G  + +    P   ++               D      L 
Sbjct: 6   FIVCGHSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLK 65

Query: 128 EV-IRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVR 186
           +  I     ++  + N        +        V  +   +   ++N ++          
Sbjct: 66  KAGIDRCRAILALSDNDADNAFVVLSAKDMSSDVKTVLAVSDSKNLNKIK---------M 116

Query: 187 SQVDHVIWPD---GKRIVLLAEGRLVN 210
              D ++ P     + +  +  G  +N
Sbjct: 117 VHPDIILSPQLFGSEILARVLNGEEIN 143

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]} Length = 201

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

 Score = 40.5 bits (94), Expect = 2e-04
 Identities = 20/124 (16%), Positives = 38/124 (30%)

Query: 59  CRESIIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACM 118
             E++  ++         G  V++ G G VG          G  + + + D      A  
Sbjct: 9   VFEAMKATVAHRGLGSLDGLTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTERVAHAVA 68

Query: 119 DGFSVVKLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTP 178
            G + V L +V+ T   V        V+T E    +    V     +   +   + +   
Sbjct: 69  LGHTAVALEDVLSTPCDVFAPCAMGGVITTEVARTLDCSVVAGAANNVIADEAASDILHA 128

Query: 179 DLTW 182
               
Sbjct: 129 RGIL 132

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} Length = 134

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

 Score = 38.4 bits (88), Expect = 4e-04
 Identities = 21/136 (15%), Positives = 38/136 (27%), Gaps = 21/136 (15%)

Query: 78  KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDG---------FSVVKLNE 128
           KQ  + G G  G    + L  +G  +   +I+                         L+ 
Sbjct: 1   KQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYASYATHAVIANATEENELLSL 60

Query: 129 VIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQ 188
            IR  + V+ A G     +      +K   +      +        L          +  
Sbjct: 61  GIRNFEYVIVAIGANIQASTLTTLLLKELDIPNIWVKAQNYYHHKVLE---------KIG 111

Query: 189 VDHVIWPD---GKRIV 201
            D +I P+   G +I 
Sbjct: 112 ADRIIHPEKDMGVKIA 127

>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]} Length = 230

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Leucine dehydrogenase
species: Bacillus sphaericus [TaxId: 1421]

 Score = 36.9 bits (85), Expect = 0.003
 Identities = 15/87 (17%), Positives = 31/87 (35%), Gaps = 1/87 (1%)

Query: 77  GKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDI- 135
           G  V + G G V K  C+ L   G  + +T+++      A  +  +       I  V   
Sbjct: 39  GLAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAVSAAVAEEGADAVAPNAIYGVTCD 98

Query: 136 VVTATGNKNVVTREHMDKMKNGCVVCN 162
           +        V+    + ++K   +  +
Sbjct: 99  IFAPCALGAVLNDFTIPQLKAKVIAGS 125

>d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 171

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.2 bits (83), Expect = 0.004
 Identities = 22/138 (15%), Positives = 41/138 (29%), Gaps = 15/138 (10%)

Query: 56  LYMCRESIIDSLKRSTDVMFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICAL 114
           + +     I +          GK+ ++    E VG+     L   G  +Y  +++ I   
Sbjct: 8   VKILEFLKIYNNLLPEGNRLYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQKF 67

Query: 115 QA----------CMDGFSVVK--LNEVIRTVDIVVTATGNKNVVTREHMDK--MKNGCVV 160
                         D     +  L +     D+V+T   ++N        K         
Sbjct: 68  TRGESLKLNKHHVEDLGEYSEDLLKKCSLDSDVVITGVPSENYKFPTEYIKEGAVCINFA 127

Query: 161 CNMGHSNTEIDVNSLRTP 178
           C    S+   +  SL  P
Sbjct: 128 CTKNFSDDVKEKASLYVP 145

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	542
d1li4a2	267	S-adenosylhomocystein hydrolase {Human (Homo sapie	100.0
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	100.0
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	100.0
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	100.0
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	100.0
d1v8ba2	313	S-adenosylhomocystein hydrolase {Plasmodium falcip	100.0
d1v8ba2	313	S-adenosylhomocystein hydrolase {Plasmodium falcip	99.96
d1li4a2	267	S-adenosylhomocystein hydrolase {Human (Homo sapie	99.96
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	99.53
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	99.53
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	99.52
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	99.5
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	99.44
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	99.44
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	99.42
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	99.39
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	99.37
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	99.37
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	99.12
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	99.1
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	99.04
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	99.02
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	99.02
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	99.0
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	98.97
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	98.96
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	98.94
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	98.93
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	98.86
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	98.83
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	98.8
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	98.77
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	98.73
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	98.73
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	98.72
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	98.7
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	98.69
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	98.61
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	98.5
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	98.49
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	98.48
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	98.46
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	98.45
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	98.42
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	98.42
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	98.38
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	98.32
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	98.29
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	98.25
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	98.23
d1b0aa1	166	Methylenetetrahydrofolate dehydrogenase/cyclohydro	98.18
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	98.15
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	98.15
d1a4ia1	170	Methylenetetrahydrofolate dehydrogenase/cyclohydro	98.14
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	98.14
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	98.13
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	98.12
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	98.12
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	98.1
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	98.04
d1leha1	230	Leucine dehydrogenase {Bacillus sphaericus [TaxId:	98.0
d1np3a2	182	Class I ketol-acid reductoisomerase (KARI) {Pseudo	97.98
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	97.98
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	97.95
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	97.89
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	97.87
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	97.84
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	97.83
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	97.82
d1edza1	171	Methylenetetrahydrofolate dehydrogenase/cyclohydro	97.82
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	97.79
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	97.79
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	97.75
d1o89a2	177	Hypothetical protein YhdH {Escherichia coli [TaxId	97.75
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	97.69
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	97.61
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	97.61
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	97.56
d1qmga2	226	Class II ketol-acid reductoisomerase (KARI) {Spina	97.54
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	97.49
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	97.45
d2i76a2	153	Hypothetical protein TM1727 {Thermotoga maritima [	97.42
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	97.36
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	97.35
d1x7da_	340	Ornithine cyclodeaminase {Pseudomonas putida [TaxI	97.2
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	97.19
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	97.15
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	97.14
d1v9la1	242	Glutamate dehydrogenase {Pyrobaculum islandicum [T	97.13
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	97.13
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	97.11
d1omoa_	320	Archaeal alanine dehydrogenase {Archaeon Archaeogl	97.05
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	97.02
d1gtma1	239	Glutamate dehydrogenase {Archaeon Pyrococcus furio	97.01
d2cvza2	156	Hydroxyisobutyrate dehydrogenase {Thermus thermoph	97.01
d1b26a1	234	Glutamate dehydrogenase {Thermotoga maritima [TaxI	97.0
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	96.95
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	96.93
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	96.91
d1hwxa1	293	Glutamate dehydrogenase {Cow (Bos taurus) [TaxId:	96.9
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	96.89
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	96.88
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	96.82
d1bgva1	255	Glutamate dehydrogenase {Clostridium symbiosum [Ta	96.75
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	96.69
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	96.64
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	96.63
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	96.62
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	96.58
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	96.53
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	96.52
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	96.51
d2czca2	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	96.49
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	96.49
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	96.48
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	96.47
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	96.45
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	96.43
d1b7go1	178	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	96.41
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	96.39
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	96.37
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	96.35
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	96.29
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	96.28
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	96.25
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	96.24
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	96.15
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	96.08
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	96.07
d1cf2o1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	96.04
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	96.04
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	96.03
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	96.01
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	96.01
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	96.01
d1j5pa4	132	Hypothetical protein TM1643 {Thermotoga maritima [	95.99
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	95.97
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	95.94
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	95.9
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	95.88
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	95.85
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	95.84
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	95.84
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	95.83
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	95.81
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	95.8
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	95.8
d1f06a1	170	Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb	95.8
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	95.79
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	95.77
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	95.71
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	95.69
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	95.68
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	95.65
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	95.62
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	95.62
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	95.61
d1ooea_	235	Dihydropteridin reductase (pteridine reductase) {N	95.61
d1ydwa1	184	Probable oxidoreductase At4g09670 {Thale cress (Ar	95.53
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	95.44
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	95.43
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	95.38
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	95.37
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	95.34
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	95.32
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	95.3
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	95.3
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	95.25
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	95.23
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	95.17
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	95.08
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	95.08
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	95.06
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	95.06
d1vl6a1	222	Malate oxidoreductase (malic enzyme) {Thermotoga m	95.05
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	95.04
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	94.94
d1xeaa1	167	Putative oxidoreductase VCA1048 {Vibrio cholerae [	94.88
d1tlta1	164	Virulence factor MviM {Escherichia coli [TaxId: 56	94.83
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	94.78
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	94.75
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	94.72
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	94.68
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	94.62
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	94.53
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	94.46
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	94.45
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	94.44
d1nvmb1	157	Acetaldehyde dehydrogenase (acylating) {Pseudomona	94.43
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	94.37
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	94.33
d1o8ca2	77	Hypothetical protein YhdH {Escherichia coli [TaxId	94.26
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	94.21
d2h1qa1	251	Hypothetical protein Dhaf_3308 {Desulfitobacterium	94.18
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	94.14
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	94.14
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	94.13
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	94.12
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	94.11
d1h6da1	221	Glucose-fructose oxidoreductase, N-terminal domain	94.01
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	93.99
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	93.96
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	93.96
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	93.77
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	93.77
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	93.76
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	93.72
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	93.69
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	93.66
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	93.57
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	93.55
d1d7oa_	297	Enoyl-ACP reductase {Oil seed rape (Brassica napus	93.46
d1zh8a1	181	Hypothetical protein TM0312 {Thermotoga maritima [	93.45
d1obba1	171	Alpha-glucosidase AglA {Thermotoga maritima [TaxId	93.45
d1vjta1	193	Putative alpha-glucosidase TM0752 {Thermotoga mari	93.44
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	93.42
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	93.39
d1pvva2	163	Ornithine transcarbamoylase {Archaeon Pyrococcus f	93.34
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	93.31
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	93.26
d1pj3a1	294	Mitochondrial NAD(P)-dependent malic enzyme {Human	93.18
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	93.15
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	93.13
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	93.1
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	93.08
d1up7a1	162	6-phospho-beta-glucosidase {Thermotoga maritima [T	93.04
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	93.03
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	92.97
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	92.87
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	92.86
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	92.79
d1s6ya1	169	6-phospho-beta-glucosidase {Bacillus stearothermop	92.75
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	92.59
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	92.55
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	92.54
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	92.5
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	92.45
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	92.28
d2bkaa1	232	TAT-interacting protein TIP30 {Human (Homo sapiens	92.14
d1u8xx1	167	Maltose-6'-phosphate glucosidase GlvA {Bacillus su	92.14
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	92.11
d2naca2	186	Formate dehydrogenase {Pseudomonas sp., strain 101	92.06
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	92.0
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	91.84
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	91.75
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	91.74
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	91.67
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	91.66
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	91.65
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	91.61
d1mv8a3	136	GDP-mannose 6-dehydrogenase, GDP-binding domain {P	91.6
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	91.44
d1uh5a_	329	Enoyl-ACP reductase {Malaria parasite (Plasmodium	91.42
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	91.4
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	91.37
d1gz6a_	302	(3R)-hydroxyacyl-CoA dehydrogenase domain of estra	91.29
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	91.21
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	91.18
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	91.02
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	90.96
d1ml4a2	157	Aspartate carbamoyltransferase catalytic subunit {	90.9
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	90.75
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	90.63
d1b0aa1	166	Methylenetetrahydrofolate dehydrogenase/cyclohydro	90.54
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	90.37
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	90.36
d1o0sa1	308	Mitochondrial NAD(P)-dependent malic enzyme {Pig r	90.25
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	90.22
d1zmta1	252	Halohydrin dehalogenase HheC {Agrobacterium tumefa	90.12
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	90.06
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	90.03
d1ygya2	130	Phosphoglycerate dehydrogenase {Mycobacterium tube	89.99
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	89.92
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	89.78
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	89.73
d1qp8a2	121	Putative formate dehydrogenase {Archaeon Pyrobacul	89.65
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	89.65
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	89.65
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	89.47
d1pg5a2	153	Aspartate carbamoyltransferase catalytic subunit {	89.46
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	89.22
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	89.18
d1lc0a1	172	Biliverdin reductase {Rat (Rattus norvegicus) [Tax	89.17
d1dssg1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	89.06
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	89.04
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	88.92
d1uaya_	241	Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t	88.86
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	88.81
d1vm6a3	128	Dihydrodipicolinate reductase {Thermotoga maritima	88.74
d1edoa_	244	beta-keto acyl carrier protein reductase {Oil seed	88.72
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	88.72
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	88.67
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	88.6
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	88.57
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	88.53
d1sc6a2	132	Phosphoglycerate dehydrogenase {Escherichia coli [	88.42
d1np3a2	182	Class I ketol-acid reductoisomerase (KARI) {Pseudo	88.33
d1oaaa_	259	Sepiapterin reductase {Mouse (Mus musculus) [TaxId	88.3
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	88.2
d1vlva2	161	Ornithine transcarbamoylase {Thermotoga maritima [	88.12
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	88.05
d2bd0a1	240	Bacterial sepiapterin reductase {Chlorobium tepidu	87.89
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	87.79
d2at2a2	151	Aspartate carbamoyltransferase catalytic subunit {	87.77
d1gdha2	129	D-glycerate dehydrogenase {Hyphomicrobium methylov	87.72
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	87.44
d2b69a1	312	UDP-glucuronate decarboxylase 1 {Human (Homo sapie	87.38
d1mo9a1	261	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	87.21
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	87.06
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	86.96
d1ebfa1	168	Homoserine dehydrogenase {Baker's yeast (Saccharom	86.93
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	86.87
d1gado1	166	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	86.85
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	86.39
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	86.17
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	86.06
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	85.78
d1cjca1	225	Adrenodoxin reductase of mitochondrial p450 system	85.65
d1fjha_	257	3-alpha-hydroxysteroid dehydrogenase {Comamonas te	85.48
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	85.42
d1edza1	171	Methylenetetrahydrofolate dehydrogenase/cyclohydro	85.34
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	85.19
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	85.01
d1a4ia1	170	Methylenetetrahydrofolate dehydrogenase/cyclohydro	84.98
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	84.88
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	84.82
d1gq2a1	298	Mitochondrial NAD(P)-dependent malic enzyme {Domes	84.79
d1tuga1	310	Aspartate carbamoyltransferase catalytic subunit {	84.7
d2a35a1	212	Hypothetical protein PA4017 {Pseudomonas aeruginos	84.56
d1yo6a1	250	Putative carbonyl reductase sniffer {Caenorhabditi	84.25
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	84.17
d1lqta1	216	Ferredoxin:NADP reductase FprA {Mycobacterium tube	84.06
d1obfo1	173	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	84.05
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	83.87
d3cmco1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	83.78
d1u8fo1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	83.74
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	83.52
d1rpna_	321	GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos	83.47
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	83.36
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	83.32
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	83.02
d1db3a_	357	GDP-mannose 4,6-dehydratase {Escherichia coli [Tax	82.97
d2nvwa1	237	Galactose/lactose metabolism regulatory protein GA	82.8
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	82.75
d1ekxa2	160	Aspartate carbamoyltransferase catalytic subunit {	82.74
d1mxha_	266	Dihydropteridin reductase (pteridine reductase) {T	82.16
d1dlja3	108	UDP-glucose dehydrogenase (UDPGDH), C-terminal (UD	81.89
d2b0ja2	242	5,10-methenyltetrahydromethanopterin hydrogenase,	81.59
d1k3ta1	190	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	81.38
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	81.05
d2gjca1	311	Thiazole biosynthetic enzyme Thi4 {Baker's yeast (	81.01
d2blla1	342	Polymyxin resistance protein ArnA (PrmI) {Escheric	80.7
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	80.22
d2b4ro1	166	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	80.2

>d1li4a2 c.23.12.3 (A:3-189,A:353-432) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: S-adenosylhomocystein hydrolase
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.1e-43  Score=345.70  Aligned_cols=106  Identities=49%  Similarity=0.926  Sum_probs=101.6

Q ss_pred             CCCCcEEeecCCCHHHHHHHHHHHhh--cCCCceeecCCCchhhhhhhhccccccccceeccchhhHHHHHHHHHHcCCc
Q psy4626         436 YTGLPVFAWRGETEEDFWWCIDKCVN--SWQPNMILDDGGDATHWMLKKYPTMFKAIKGIVEESLTGVHRLYQLSKAGKL  513 (542)
Q Consensus       436 ~~g~~v~a~~g~~~~ey~~~~~~~~~--~~~p~~i~ddg~d~~~~~h~~~~~~~~~~~g~~eetttgv~~l~~~~~~g~l  513 (542)
                      +.|||||||||||+||||||++++|+  +++||||+||||||+.++|++||+++++|+|+||||||||+|||+|+++|.|
T Consensus        92 ~~Gi~VfA~~g~~~eey~~~~~~~L~~~~~~P~liiDDG~Dl~~~~h~~~~~~~~~i~G~~EETTTGV~RL~am~~~g~L  171 (267)
T d1li4a2          92 KAGIPVYAWKGETDEEYLWCIEQTLYFKDGPLNMILDDGGDLTNLIHTKYPQLLPGIRGISEETTTGVHNLYKMMANGIL  171 (267)
T ss_dssp             HTTCCEEECTTCCHHHHHHHHHTTTEETTEECSEEEESSSHHHHHHHHHCGGGGGGCCEEEECSHHHHHHHHHHHHTTCC
T ss_pred             cCCceEEEecCCCHHHHHHHHHHHHhccCCCCcEEEehhhhHHHhhhhhcccccCccEEecccccHHHHHHHHHHHCCCC
Confidence            36999999999999999999999993  3459999999999999999999999999999999999999999999999999


Q ss_pred             ccceeeeccccccccccccCCCCcccCC
Q psy4626         514 TVPAMNVNDSVTKTKFDNLYMCRESIID  541 (542)
Q Consensus       514 ~~p~i~vnd~~~k~~fdn~yg~~~s~~d  541 (542)
                      +||+||||||+|||+|||+|||+||.+|
T Consensus       172 ~fP~i~VNDa~tK~~F~~~~~~~~Sf~~  199 (267)
T d1li4a2         172 KVPAINVNDSVTKSKFHPSFVMSNSFTN  199 (267)
T ss_dssp             CSEEEECTTSHHHHTTSCHHHHHHHHHH
T ss_pred             CcceEECCCcchhhhcchhHHHHHHHHH
Confidence            9999999999999999999999999875

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=100.00  E-value=2.3e-42  Score=319.42  Aligned_cols=120  Identities=40%  Similarity=0.671  Sum_probs=114.9

Q ss_pred             cHHHHhhcCC----CCCCCCCCCccccCCeeeeehhhhcccCcEEEEccCCCCccCHhHHhcCCCCcEEEccCCCCcccc
Q psy4626         274 SDEQAKYMGL----NKAGPFKPSYYSMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEID  349 (542)
Q Consensus       274 t~~~a~~lg~----~e~~p~~a~ea~mdG~~v~~~~~a~~~~d~~~t~tg~~~vi~~~~~~~mk~gail~n~gh~~~Ei~  349 (542)
                      .+++++++|+    +|+||+||+||+||||+|++|+||++.+|||||+|||++||+.+||.+|||||||||+||||+|||
T Consensus        38 ~A~~~rg~Ga~V~V~E~DPi~alqA~mdGf~v~~~~~a~~~aDi~vTaTGn~~vI~~~h~~~MKdgaIl~N~GHfd~EId  117 (163)
T d1v8ba1          38 CASSMKGLGARVYITEIDPICAIQAVMEGFNVVTLDEIVDKGDFFITCTGNVDVIKLEHLLKMKNNAVVGNIGHFDDEIQ  117 (163)
T ss_dssp             HHHHHHHHTCEEEEECSCHHHHHHHHTTTCEECCHHHHTTTCSEEEECCSSSSSBCHHHHTTCCTTCEEEECSSTTTSBC
T ss_pred             HHHHHHhCCCEEEEEecCchhhHHHHhcCCccCchhHccccCcEEEEcCCCCccccHHHHHHhhCCeEEEeccccchhhh
Confidence            5788999999    699999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccC-CCcceecccCCeeEEEcCCCCEEEEeecCceecccCCC
Q psy4626         350 VNSLRT-PDLTWEKVRSQVDHVIWPDGKRIVLLAEGRLVNLSCSS  393 (542)
Q Consensus       350 ~~~l~~-~~~~~~~~~~~v~~~~~~~g~~~~ll~~GrlvNl~~~~  393 (542)
                      +++|++ .+.+++++||+|++|++||||+||||+|||||||+||+
T Consensus       118 v~~L~~~~~~~~~~vrp~V~~y~lpdG~~i~lLaeGrLVNL~~a~  162 (163)
T d1v8ba1         118 VNELFNYKGIHIENVKPQVDRITLPNGNKIIVLARGRLLNLGCAT  162 (163)
T ss_dssp             HHHHHTSTTCEEEEEETTEEEEECTTSCEEEEEGGGSBHHHHSSC
T ss_pred             hHHHHhCcCcceeeecCCceEEEeCCCCEEEEEECCcEEEecCCC
Confidence            999876 47788999999999999999999999999999999985

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=100.00  E-value=9.2e-40  Score=301.88  Aligned_cols=161  Identities=53%  Similarity=0.951  Sum_probs=155.1

Q ss_pred             hHHHHHHHHHHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCCc
Q psy4626          55 NLYMCRESIIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVD  134 (542)
Q Consensus        55 ~~~g~~~s~~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~aD  134 (542)
                      |+|||+||++++++|+|+..++||+++|+|||+||+++|++|+++|++|+|+|+||.++++|.++||++.+++++++.+|
T Consensus         1 N~yg~g~S~~d~i~r~t~~~laGk~vvV~GYG~vGrG~A~~~rg~Ga~V~V~E~DPi~alqA~mdGf~v~~~~~a~~~aD   80 (163)
T d1v8ba1           1 NVYGCRHSLPDGLMRATDFLISGKIVVICGYGDVGKGCASSMKGLGARVYITEIDPICAIQAVMEGFNVVTLDEIVDKGD   80 (163)
T ss_dssp             HHHHHHHHHHHHHHHHHCCCCTTSEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTTCEECCHHHHTTTCS
T ss_pred             CccccchhHHHHHHHHhCceecCCEEEEecccccchhHHHHHHhCCCEEEEEecCchhhHHHHhcCCccCchhHccccCc
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEcCCCcccCCHHHHhccCCCeEEEeccCCCcccChHhhcC-CCcceeeeccceeeEecCCCCEEEEecCCCcccccC
Q psy4626         135 IVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRT-PDLTWEKVRSQVDHVIWPDGKRIVLLAEGRLVNLSC  213 (542)
Q Consensus       135 vVi~atG~~~lI~~e~l~~mk~GailvnvG~g~~eid~~aL~~-~~l~v~~~~~~v~~y~~~dg~~I~LLa~GrLvnl~~  213 (542)
                      +||++||++++|+.++|+.||+|++++|+||+++|||+.+|.. ...++.+++|+++.|.+|||+.|+||++|||+||+|
T Consensus        81 i~vTaTGn~~vI~~~h~~~MKdgaIl~N~GHfd~EIdv~~L~~~~~~~~~~vrp~V~~y~lpdG~~i~lLaeGrLVNL~~  160 (163)
T d1v8ba1          81 FFITCTGNVDVIKLEHLLKMKNNAVVGNIGHFDDEIQVNELFNYKGIHIENVKPQVDRITLPNGNKIIVLARGRLLNLGC  160 (163)
T ss_dssp             EEEECCSSSSSBCHHHHTTCCTTCEEEECSSTTTSBCHHHHHTSTTCEEEEEETTEEEEECTTSCEEEEEGGGSBHHHHS
T ss_pred             EEEEcCCCCccccHHHHHHhhCCeEEEeccccchhhhhHHHHhCcCcceeeecCCceEEEeCCCCEEEEEECCcEEEecC
Confidence            9999999999999999999999999999999999999999864 356778899999999999999999999999999998


Q ss_pred             CC
Q psy4626         214 SS  215 (542)
Q Consensus       214 ~t  215 (542)
                      ++
T Consensus       161 a~  162 (163)
T d1v8ba1         161 AT  162 (163)
T ss_dssp             SC
T ss_pred             CC
Confidence            63

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.1e-39  Score=296.42  Aligned_cols=162  Identities=50%  Similarity=0.881  Sum_probs=157.0

Q ss_pred             HhHHHHHHHHHHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCC
Q psy4626          54 DNLYMCRESIIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTV  133 (542)
Q Consensus        54 d~~~g~~~s~~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~a  133 (542)
                      ||+|||+||+|++++|+++..+.||+|+|+|||+||+++|++++++||+|+++|+||.++.+|.++||++.++++++..+
T Consensus         1 dN~yg~g~S~~~~~~r~t~~~l~Gk~v~V~GyG~iG~g~A~~~rg~G~~V~v~e~dp~~al~A~~dG~~v~~~~~a~~~a   80 (163)
T d1li4a1           1 DNLYGCRESLIDGIKRATDVMIAGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDPINALQAAMEGYEVTTMDEACQEG   80 (163)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECCHHHHTTTC
T ss_pred             CCcccchhhHHHHHHHHhCceecCCEEEEeccccccHHHHHHHHhCCCeeEeeecccchhHHhhcCceEeeehhhhhhhc
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cEEEEcCCCcccCCHHHHhccCCCeEEEeccCCCcccChHhhcCCCcceeeeccceeeEecCCCCEEEEecCCCcccccC
Q psy4626         134 DIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIVLLAEGRLVNLSC  213 (542)
Q Consensus       134 DvVi~atG~~~lI~~e~l~~mk~GailvnvG~g~~eid~~aL~~~~l~v~~~~~~v~~y~~~dg~~I~LLa~GrLvnl~~  213 (542)
                      |+||+|||++++|+.++|+.||+|++++|+||++.|||+++|.+...++.+++++++.|.+|||+.|+||++||++||++
T Consensus        81 divvtaTGn~~vI~~eh~~~MKdgaIL~N~Ghfd~EId~~~L~~~~~~~~~v~~~v~~y~l~dG~~i~lLaeGrlvNL~~  160 (163)
T d1li4a1          81 NIFVTTTGCIDIILGRHFEQMKDDAIVCNIGHFDVEIDVKWLNENAVEKVNIKPQVDRYRLKNGRRIILLAEGRLVNLGC  160 (163)
T ss_dssp             SEEEECSSCSCSBCHHHHTTCCTTEEEEECSSSTTSBCHHHHHHHCSEEEEEETTEEEEECTTSCEEEEEGGGSCHHHHS
T ss_pred             cEEEecCCCccchhHHHHHhccCCeEEEEeccccceecHHHHhhccceeeeecCCeeEEEeCCCCEEEEEeCCCeEeecC
Confidence            99999999999999999999999999999999999999999987667788899999999999999999999999999998


Q ss_pred             CC
Q psy4626         214 SS  215 (542)
Q Consensus       214 ~t  215 (542)
                      ++
T Consensus       161 a~  162 (163)
T d1li4a1         161 AM  162 (163)
T ss_dssp             SC
T ss_pred             CC
Confidence            63

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-39  Score=302.35  Aligned_cols=125  Identities=33%  Similarity=0.593  Sum_probs=122.0

Q ss_pred             ccccccHHHHhhcCC----CCCCCCCCCccccCCeeeeehhhhcccCcEEEEccCCCCccCHhHHhcCCCCcEEEccCCC
Q psy4626         269 HLTELSDEQAKYMGL----NKAGPFKPSYYSMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHS  344 (542)
Q Consensus       269 ~i~~lt~~~a~~lg~----~e~~p~~a~ea~mdG~~v~~~~~a~~~~d~~~t~tg~~~vi~~~~~~~mk~gail~n~gh~  344 (542)
                      .+++=.+++++++|+    +|+||.+|+||+||||+|++++++++.+|+|+|+|||+++|+.|||++|||||||||+|||
T Consensus        34 ~iG~g~A~~~rg~G~~V~v~e~dp~~al~A~~dG~~v~~~~~a~~~adivvtaTGn~~vI~~eh~~~MKdgaIL~N~Ghf  113 (163)
T d1li4a1          34 DVGKGCAQALRGFGARVIITEIDPINALQAAMEGYEVTTMDEACQEGNIFVTTTGCIDIILGRHFEQMKDDAIVCNIGHF  113 (163)
T ss_dssp             HHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECCHHHHTTTCSEEEECSSCSCSBCHHHHTTCCTTEEEEECSSS
T ss_pred             cccHHHHHHHHhCCCeeEeeecccchhHHhhcCceEeeehhhhhhhccEEEecCCCccchhHHHHHhccCCeEEEEeccc
Confidence            788889999999999    6999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcccccccccCCCcceecccCCeeEEEcCCCCEEEEeecCceecccCCC
Q psy4626         345 NTEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIVLLAEGRLVNLSCSS  393 (542)
Q Consensus       345 ~~Ei~~~~l~~~~~~~~~~~~~v~~~~~~~g~~~~ll~~GrlvNl~~~~  393 (542)
                      |.|||+++|++.+.+++++||+|++|++||||+||||+|||||||+||+
T Consensus       114 d~EId~~~L~~~~~~~~~v~~~v~~y~l~dG~~i~lLaeGrlvNL~~a~  162 (163)
T d1li4a1         114 DVEIDVKWLNENAVEKVNIKPQVDRYRLKNGRRIILLAEGRLVNLGCAM  162 (163)
T ss_dssp             TTSBCHHHHHHHCSEEEEEETTEEEEECTTSCEEEEEGGGSCHHHHSSC
T ss_pred             cceecHHHHhhccceeeeecCCeeEEEeCCCCEEEEEeCCCeEeecCCC
Confidence            9999999999988999999999999999999999999999999999985

>d1v8ba2 c.23.12.3 (A:4-234,A:398-479) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: S-adenosylhomocystein hydrolase
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=100.00  E-value=5.5e-38  Score=316.04  Aligned_cols=104  Identities=43%  Similarity=0.849  Sum_probs=96.1

Q ss_pred             CCCCcEEeecCCCHHHHHHHHHHHhh-----cCCCceeecCCCchhhhhh------------------------------
Q psy4626         436 YTGLPVFAWRGETEEDFWWCIDKCVN-----SWQPNMILDDGGDATHWML------------------------------  480 (542)
Q Consensus       436 ~~g~~v~a~~g~~~~ey~~~~~~~~~-----~~~p~~i~ddg~d~~~~~h------------------------------  480 (542)
                      ..|||||||||||+|||||||+++|.     +++||||+|||||||+++|                              
T Consensus        91 ~~gi~VfAwkGet~eey~~~i~~~L~~~dg~~~~P~~IlDDGgDlt~~vh~g~~~E~l~~~~~~lp~p~~~~n~~~~~~~  170 (313)
T d1v8ba2          91 LENVTVFAWKNETLEEYWWCVESALTWGDGDDNGPDMIVDDGGDATLLVHKGVEYEKLYEEKNILPDPEKAKNEEERCFL  170 (313)
T ss_dssp             STTEEEECCTTCCHHHHHHHHHHHHCCSSSSSCSCSEEEESSSHHHHHHHHHHHHHHHHHHHCCCCCGGGCSSHHHHHHH
T ss_pred             cCCceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCcEEeehhHHHHHHHHhcchhccccccccccCCCCCCCCHHHHHHH
Confidence            36999999999999999999999993     2489999999999999999                              


Q ss_pred             -----------hhccccccccceeccchhhHHHHHHHHHHcCCcccceeeeccccccccccc------cCCCCccc
Q psy4626         481 -----------KKYPTMFKAIKGIVEESLTGVHRLYQLSKAGKLTVPAMNVNDSVTKTKFDN------LYMCRESI  539 (542)
Q Consensus       481 -----------~~~~~~~~~~~g~~eetttgv~~l~~~~~~g~l~~p~i~vnd~~~k~~fdn------~yg~~~s~  539 (542)
                                 ++|++++++|+|+||||||||+|||+|.++|.|+||+||||||+|||+|||      .+.|.|.+
T Consensus       171 ~~lk~~~~~~~~~~~~~~~~i~GvsEETTTGV~RL~~m~~~g~L~fPainVNDsvtK~~F~~P~~vMd~SFanQ~L  246 (313)
T d1v8ba2         171 TLLKNSILKNPKKWTNIAKKIIGVSEETTTGVLRLKKMDKQNELLFTAINVNDAVTKQKYDHPAFVMSFSFCNQTF  246 (313)
T ss_dssp             HHHHHHHTTCTTHHHHHHTTCCEEEECSHHHHHHHHHHHHTTCCCSEEEECTTSHHHHTTHSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhCcHHHHHhhhcEEEEeCCCCccHHhHHHHHHcCcceeeeEecCcccCHHHhCCcHHHHHHHHHhHHH
Confidence                       578899999999999999999999999999999999999999999999999      66666644

>d1v8ba2 c.23.12.3 (A:4-234,A:398-479) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: S-adenosylhomocystein hydrolase
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=99.96  E-value=4.4e-31  Score=265.55  Aligned_cols=247  Identities=27%  Similarity=0.464  Sum_probs=160.2

Q ss_pred             CccHHHHHHHhCCCCCCCCceeeceecccHHhhhcccccceeecCchhhhHHHHhHHHHHHHHHHHHHhhcCccccCcEE
Q psy4626           1 MPGIMALRKRAGDDKPLKNARIVGCTHINAQTAAGKLTVPAMNVNDSVTKTKFDNLYMCRESIIDSLKRSTDVMFGGKQV   80 (542)
Q Consensus         1 MP~l~~l~~~~~~~~pl~G~~i~~~lh~~~~tA~~~L~~PV~~vn~s~~K~~fd~~~g~~~s~~~ai~r~~~~~l~GktV   80 (542)
                      ||+|++||++|+.+|||+|+||++|+|+|+|||.                        .-+    .+      .-.|..|
T Consensus        25 MP~L~alr~~~~~~kPlkG~rIagcLHmt~qTAv------------------------Lie----tL------~~~GAeV   70 (313)
T d1v8ba2          25 MPGLMRIREEYGKDQPLKNAKITGCLHMTVECAL------------------------LIE----TL------QKLGAQI   70 (313)
T ss_dssp             CHHHHHHHHHSTTTCTTTTCEEEEESCCSHHHHH------------------------HHH----HH------HHTTCEE
T ss_pred             CHHHHHHHHHHhccCCCCCCEEEEEEccHHHHHH------------------------HHH----HH------HHhCCee
Confidence            9999999999999999999999999999999998                        111    21      2249999


Q ss_pred             EEEcCChhH--HHHHHHHHh-CCCEEEEEeCCchhhhhhhcCCceeeCHHHHh-------cCCcEEEEcCCCc-ccCCH-
Q psy4626          81 VLCGYGEVG--KGCCQSLKG-LGCVIYITEIDPICALQACMDGFSVVKLNEVI-------RTVDIVVTATGNK-NVVTR-  148 (542)
Q Consensus        81 vViG~G~IG--~~vA~~l~~-~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l-------~~aDvVi~atG~~-~lI~~-  148 (542)
                      .+.|+++-.  ..+|.++.. .|+.|+++.--.  ..+      +.-.++.++       .++|+|++..|.- .++.. 
T Consensus        71 ~~~scNp~STQD~vAAAl~~~~gi~VfAwkGet--~ee------y~~~i~~~L~~~dg~~~~P~~IlDDGgDlt~~vh~g  142 (313)
T d1v8ba2          71 RWCSCNIYSTADYAAAAVSTLENVTVFAWKNET--LEE------YWWCVESALTWGDGDDNGPDMIVDDGGDATLLVHKG  142 (313)
T ss_dssp             EEECSSSSCCCHHHHHHHTTSTTEEEECCTTCC--HHH------HHHHHHHHHCCSSSSSCSCSEEEESSSHHHHHHHHH
T ss_pred             EEeccCCcccchHHHHHhhccCCceEEEecCCC--HHH------HHHHHHHHHhcCCCCCCCCcEEeehhHHHHHHHHhc
Confidence            999999987  678888865 799999983100  110      111233444       3789999987742 11110 


Q ss_pred             HHHhc-cCCCeEEEeccCCC--cccC---------------hHhhcCCCcceee-eccceeeEecCCCCEEEEecCCCcc
Q psy4626         149 EHMDK-MKNGCVVCNMGHSN--TEID---------------VNSLRTPDLTWEK-VRSQVDHVIWPDGKRIVLLAEGRLV  209 (542)
Q Consensus       149 e~l~~-mk~GailvnvG~g~--~eid---------------~~aL~~~~l~v~~-~~~~v~~y~~~dg~~I~LLa~GrLv  209 (542)
                      -.++. ....+.+-+.....  .+-.               ...+..+-+-+.+ ...++.+..       .+..+|.|.
T Consensus       143 ~~~E~l~~~~~~lp~p~~~~n~~~~~~~~~lk~~~~~~~~~~~~~~~~i~GvsEETTTGV~RL~-------~m~~~g~L~  215 (313)
T d1v8ba2         143 VEYEKLYEEKNILPDPEKAKNEEERCFLTLLKNSILKNPKKWTNIAKKIIGVSEETTTGVLRLK-------KMDKQNELL  215 (313)
T ss_dssp             HHHHHHHHHHCCCCCGGGCSSHHHHHHHHHHHHHHTTCTTHHHHHHTTCCEEEECSHHHHHHHH-------HHHHTTCCC
T ss_pred             chhccccccccccCCCCCCCCHHHHHHHHHHHHHHhhCcHHHHHhhhcEEEEeCCCCccHHhHH-------HHHHcCcce
Confidence            00000 00000010100000  0000               0001100000110 000111110       223334432


Q ss_pred             c----ccCC------CChhHHHhhHHHHHHHHHHHHhcCCC-CCCCCccccCChhhHHHHHHhcCCccccccccccHHHH
Q psy4626         210 N----LSCS------SLPSFVVSITACTQALALIELFNAPS-GRYKSDVYLLPKKMDEYVASLHLPTFDAHLTELSDEQA  278 (542)
Q Consensus       210 n----l~~~------thp~~vmd~sfa~q~la~~~L~~~~~-~~~~~gv~~lp~~~d~~VA~l~L~~lg~~i~~lt~~~a  278 (542)
                      .    .-.+      +||++|||+|||+|+|++++||++.. ++++++||.||+++|++||+++|++||++||+||++|+
T Consensus       216 fPainVNDsvtK~~F~~P~~vMd~SFanQ~La~~~l~~~~~~~~~~~~Vy~lP~~lDe~vA~l~L~~~g~~id~Lt~~Q~  295 (313)
T d1v8ba2         216 FTAINVNDAVTKQKYDHPAFVMSFSFCNQTFAQLDLWQNKDTNKYENKVYLLPKHLDEKVALYHLKKLNASLTELDDNQC  295 (313)
T ss_dssp             SEEEECTTSHHHHTTHSCHHHHHHHHHHHHHHHHHHHHTTTSSSCCSSEECCCHHHHHHHHHHHHGGGTCCCCCCCHHHH
T ss_pred             eeeEecCcccCHHHhCCcHHHHHHHHHhHHHHHHHHHhcCcccccCCcEEECChHHHHHHHHHHHHhcCCEeccCCHHHH
Confidence            1    1111      58999999999999999999998763 57999999999999999999999999999999999999


Q ss_pred             hhcCCCCCCCCCCCcccc
Q psy4626         279 KYMGLNKAGPFKPSYYSM  296 (542)
Q Consensus       279 ~~lg~~e~~p~~a~ea~m  296 (542)
                      +|||++..+|||...+++
T Consensus       296 ~Yl~~~~~gp~k~~~y~y  313 (313)
T d1v8ba2         296 QFLGVNKSGPFKSNEYRY  313 (313)
T ss_dssp             HHHTCCTTSCCSCTTCCC
T ss_pred             HHCCCCCCCCCCCCCCCC
Confidence            999999999999876643

>d1li4a2 c.23.12.3 (A:3-189,A:353-432) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: S-adenosylhomocystein hydrolase
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=2.2e-30  Score=254.11  Aligned_cols=224  Identities=31%  Similarity=0.518  Sum_probs=170.1

Q ss_pred             CccHHHHHHHhCCCCCCCCceeeceecccHHhhhcccccceeecCchhhhHHHHhHHHHHHHHHHHHHhhcCccccCcEE
Q psy4626           1 MPGIMALRKRAGDDKPLKNARIVGCTHINAQTAAGKLTVPAMNVNDSVTKTKFDNLYMCRESIIDSLKRSTDVMFGGKQV   80 (542)
Q Consensus         1 MP~l~~l~~~~~~~~pl~G~~i~~~lh~~~~tA~~~L~~PV~~vn~s~~K~~fd~~~g~~~s~~~ai~r~~~~~l~GktV   80 (542)
                      ||+|++||++|..+|||+|+||++|+|+|+|||.                        ..    ..+      ...|..|
T Consensus        27 MPvL~~lr~~~~~~kPl~G~rI~~clHlt~kTA~------------------------L~----~tL------~~~GA~V   72 (267)
T d1li4a2          27 MPGLMRMRERYSASKPLKGARIAGCLHMTVETAV------------------------LI----ETL------VTLGAEV   72 (267)
T ss_dssp             CHHHHHHHHHHTTTCTTTTCEEEEESCCSHHHHH------------------------HH----HHH------HHTTCEE
T ss_pred             CHHHHHHHHHhcccCCCCCCEEEEEEeehHHHHH------------------------HH----HHH------HHccCcE
Confidence            9999999999999999999999999999999998                        11    122      2359999


Q ss_pred             EEEcCChhH--HHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHHHHh----cCCcEEEEcCCCc-ccC---CHHH
Q psy4626          81 VLCGYGEVG--KGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVI----RTVDIVVTATGNK-NVV---TREH  150 (542)
Q Consensus        81 vViG~G~IG--~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l----~~aDvVi~atG~~-~lI---~~e~  150 (542)
                      .++|++|..  ..+|.+|+..|+.|+++.--.  ..+      +.-.++.++    .++|++++..|.- .++   ..+.
T Consensus        73 ~~~~~Np~STQDdvaAaL~~~Gi~VfA~~g~~--~ee------y~~~~~~~L~~~~~~P~liiDDG~Dl~~~~h~~~~~~  144 (267)
T d1li4a2          73 QWSSCNIFSTQDHAAAAIAKAGIPVYAWKGET--DEE------YLWCIEQTLYFKDGPLNMILDDGGDLTNLIHTKYPQL  144 (267)
T ss_dssp             EEECSSTTCCCHHHHHHHHHTTCCEEECTTCC--HHH------HHHHHHTTTEETTEECSEEEESSSHHHHHHHHHCGGG
T ss_pred             EEeccCcccccccceeeeccCCceEEEecCCC--HHH------HHHHHHHHHhccCCCCcEEEehhhhHHHhhhhhcccc
Confidence            999999988  788999999999999984111  000      011122333    2479999987631 111   1244


Q ss_pred             HhccCCCeEEEeccCCCcccChHhhcC----CCcceeeeccceeeEecCCCCEEEEecCCCcccccCC--C-ChhHHHhh
Q psy4626         151 MDKMKNGCVVCNMGHSNTEIDVNSLRT----PDLTWEKVRSQVDHVIWPDGKRIVLLAEGRLVNLSCS--S-LPSFVVSI  223 (542)
Q Consensus       151 l~~mk~GailvnvG~g~~eid~~aL~~----~~l~v~~~~~~v~~y~~~dg~~I~LLa~GrLvnl~~~--t-hp~~vmd~  223 (542)
                      ++.++.++....+|       +.+|+.    +.+.            +|      .++    +|-+-.  . ||.++|++
T Consensus       145 ~~~i~G~~EETTTG-------V~RL~am~~~g~L~------------fP------~i~----VNDa~tK~~F~~~~~~~~  195 (267)
T d1li4a2         145 LPGIRGISEETTTG-------VHNLYKMMANGILK------------VP------AIN----VNDSVTKSKFHPSFVMSN  195 (267)
T ss_dssp             GGGCCEEEECSHHH-------HHHHHHHHHTTCCC------------SE------EEE----CTTSHHHHTTSCHHHHHH
T ss_pred             cCccEEecccccHH-------HHHHHHHHHCCCCC------------cc------eEE----CCCcchhhhcchhHHHHH
Confidence            56666777777777       444541    1111            11      121    232222  2 89999999


Q ss_pred             HHHHHHHHHHHHhcCCCCCCCCccccCChhhHHHHHHhcCCccccccccccHHHHhhcCCCCCCCCCCCcccc
Q psy4626         224 TACTQALALIELFNAPSGRYKSDVYLLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYYSM  296 (542)
Q Consensus       224 sfa~q~la~~~L~~~~~~~~~~gv~~lp~~~d~~VA~l~L~~lg~~i~~lt~~~a~~lg~~e~~p~~a~ea~m  296 (542)
                      ||++|++++++||+++ ++++++||.||+++|++||+++|++||++||+||++|++|+|++..+|||.-++++
T Consensus       196 Sf~~q~la~~~L~~~~-~~~~~~Vy~lP~~lDe~VArl~L~~lgv~id~Lt~~Q~~Ylgv~~~Gp~k~~~yry  267 (267)
T d1li4a2         196 SFTNQVMAQIELWTHP-DKYPVGVHFLPKKLDEAVAEAHLGKLNVKLTKLTEKQAQYLGMSCDGPFKPDHYRY  267 (267)
T ss_dssp             HHHHHHHHHHHHHHCG-GGCCSEEECCCHHHHHHHHHHHHTTTTCCCCCCCHHHHHHHTSCTTSCCSCTTCCC
T ss_pred             HHHHHHHHHHHHHhCc-cccCCcEEECChHHHHHHHHHHHHhCCcEeccCCHHHHHhCCCCCCCCCCCCCCCC
Confidence            9999999999999998 79999999999999999999999999999999999999999999999999877653

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=99.53  E-value=1.2e-14  Score=138.04  Aligned_cols=104  Identities=20%  Similarity=0.380  Sum_probs=86.3

Q ss_pred             CccccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCCcEEEEcC----CCcccCC
Q psy4626          72 DVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTAT----GNKNVVT  147 (542)
Q Consensus        72 ~~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~aDvVi~at----G~~~lI~  147 (542)
                      +..+.|++|+|+|+|.||+.+|+.|++||++|+++|+.+..   .....+...+++++++.+|+|+.+.    .|.++|+
T Consensus        40 ~~~l~~ktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~~---~~~~~~~~~~l~~l~~~~D~v~~~~plt~~T~~li~  116 (199)
T d1dxya1          40 GKELGQQTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYPMK---GDHPDFDYVSLEDLFKQSDVIDLHVPGIEQNTHIIN  116 (199)
T ss_dssp             CCCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCS---SCCTTCEECCHHHHHHHCSEEEECCCCCGGGTTSBC
T ss_pred             cccccceeeeeeecccccccccccccccceeeeccCCccch---hhhcchhHHHHHHHHHhcccceeeeccccccccccc
Confidence            45789999999999999999999999999999999976543   2234566788999999999999954    4788999


Q ss_pred             HHHHhccCCCeEEEeccCCCc---ccChHhhcCC
Q psy4626         148 REHMDKMKNGCVVCNMGHSNT---EIDVNSLRTP  178 (542)
Q Consensus       148 ~e~l~~mk~GailvnvG~g~~---eid~~aL~~~  178 (542)
                      ++.|++||+|+++||+|||..   +..+.+|..+
T Consensus       117 ~~~l~~mk~~a~lIN~aRG~vvde~aL~~aL~~g  150 (199)
T d1dxya1         117 EAAFNLMKPGAIVINTARPNLIDTQAMLSNLKSG  150 (199)
T ss_dssp             HHHHHHSCTTEEEEECSCTTSBCHHHHHHHHHTT
T ss_pred             HHHhhccCCceEEEecccHhhhhhHHHHHHHhcC
Confidence            999999999999999999963   3334555554

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=99.53  E-value=4.5e-15  Score=140.86  Aligned_cols=105  Identities=19%  Similarity=0.320  Sum_probs=87.0

Q ss_pred             CccccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCCcEEEEcC----CCcccCC
Q psy4626          72 DVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTAT----GNKNVVT  147 (542)
Q Consensus        72 ~~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~aDvVi~at----G~~~lI~  147 (542)
                      +..+.|++|+|+|+|.||+.+|+.|++||++|+++|+.+..  .....++...+++++++.+|+|+.+.    .|.++|+
T Consensus        38 g~el~gk~vgIiG~G~IG~~va~~l~~fg~~V~~~d~~~~~--~~~~~~~~~~~l~~~l~~sDii~~~~plt~~T~~li~  115 (197)
T d1j4aa1          38 GREVRDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRNP--ELEKKGYYVDSLDDLYKQADVISLHVPDVPANVHMIN  115 (197)
T ss_dssp             BCCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCH--HHHHTTCBCSCHHHHHHHCSEEEECSCCCGGGTTCBS
T ss_pred             CccccCCeEEEecccccchhHHHhHhhhcccccccCccccc--ccccceeeeccccccccccccccccCCcccccccccc
Confidence            45789999999999999999999999999999999865432  23345677788999999999999964    4789999


Q ss_pred             HHHHhccCCCeEEEeccCCCc---ccChHhhcCC
Q psy4626         148 REHMDKMKNGCVVCNMGHSNT---EIDVNSLRTP  178 (542)
Q Consensus       148 ~e~l~~mk~GailvnvG~g~~---eid~~aL~~~  178 (542)
                      .+.|+.||+|+++||+|||..   +..+.+|..+
T Consensus       116 ~~~l~~mk~~a~lIN~sRG~ivde~aL~~aL~~~  149 (197)
T d1j4aa1         116 DESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSG  149 (197)
T ss_dssp             HHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHHT
T ss_pred             HHHHhhhCCccEEEecCchhhhhhHHHHHHHhcc
Confidence            999999999999999999962   3334556544

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=99.52  E-value=1.3e-14  Score=137.28  Aligned_cols=106  Identities=16%  Similarity=0.264  Sum_probs=85.8

Q ss_pred             CccccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce-eeCHHHHhcCCcEEEEcC----CCcccC
Q psy4626          72 DVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVKLNEVIRTVDIVVTAT----GNKNVV  146 (542)
Q Consensus        72 ~~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~-v~~l~e~l~~aDvVi~at----G~~~lI  146 (542)
                      +..+.|++|+|+|+|.||+.+|+.|++|||+|+++|+.+..... ...++. ..+++++++.+|+|+.+.    .|.+++
T Consensus        44 ~~eL~gktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~-~~~~~~~~~~l~~ll~~sD~i~~~~plt~~T~~li  122 (193)
T d1mx3a1          44 AARIRGETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSDGVE-RALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLI  122 (193)
T ss_dssp             CCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCTTHH-HHHTCEECSSHHHHHHHCSEEEECCCCCTTCTTSB
T ss_pred             ceeeeCceEEEeccccccccceeeeeccccceeeccCcccccch-hhhccccccchhhccccCCEEEEeecccccchhhh
Confidence            46789999999999999999999999999999999976543322 223443 567999999999999953    488999


Q ss_pred             CHHHHhccCCCeEEEeccCCCc---ccChHhhcCC
Q psy4626         147 TREHMDKMKNGCVVCNMGHSNT---EIDVNSLRTP  178 (542)
Q Consensus       147 ~~e~l~~mk~GailvnvG~g~~---eid~~aL~~~  178 (542)
                      +.+.|++||+|+++||+|||..   +..+++|..+
T Consensus       123 ~~~~l~~mk~~a~lIN~sRG~ivde~aL~~aL~~~  157 (193)
T d1mx3a1         123 NDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEG  157 (193)
T ss_dssp             SHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHHT
T ss_pred             hHHHHhccCCCCeEEecCCceEEcHHHHHHHHHcC
Confidence            9999999999999999999962   3334566544

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.50  E-value=2.8e-14  Score=133.72  Aligned_cols=107  Identities=17%  Similarity=0.300  Sum_probs=89.6

Q ss_pred             CccccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCCcEEEEcC----CCcccCC
Q psy4626          72 DVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTAT----GNKNVVT  147 (542)
Q Consensus        72 ~~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~aDvVi~at----G~~~lI~  147 (542)
                      +..+.|++++|+|+|.||+.+|+.+++||++|+++|+..... .....++...+++++++.||+|+.+.    .|+++|+
T Consensus        39 ~~~l~~k~vgiiG~G~IG~~va~~~~~fg~~v~~~d~~~~~~-~~~~~~~~~~~l~ell~~sDiv~~~~Plt~~T~~lin  117 (184)
T d1ygya1          39 GTEIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVSPA-RAAQLGIELLSLDDLLARADFISVHLPKTPETAGLID  117 (184)
T ss_dssp             BCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCHH-HHHHHTCEECCHHHHHHHCSEEEECCCCSTTTTTCBC
T ss_pred             cccccceeeeeccccchhHHHHHHhhhccceEEeecCCCChh-HHhhcCceeccHHHHHhhCCEEEEcCCCCchhhhhhh
Confidence            456889999999999999999999999999999999655433 23455677889999999999999953    5889999


Q ss_pred             HHHHhccCCCeEEEeccCCC---cccChHhhcCCC
Q psy4626         148 REHMDKMKNGCVVCNMGHSN---TEIDVNSLRTPD  179 (542)
Q Consensus       148 ~e~l~~mk~GailvnvG~g~---~eid~~aL~~~~  179 (542)
                      ++.|+.||+|+++||+|||.   .+..+++|..+.
T Consensus       118 ~~~l~~mk~~a~lIN~sRG~iVde~aL~~aL~~~~  152 (184)
T d1ygya1         118 KEALAKTKPGVIIVNAARGGLVDEAALADAITGGH  152 (184)
T ss_dssp             HHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHTSS
T ss_pred             HHHHhhhCCCceEEEecchhhhhhHHHHHHHhcCc
Confidence            99999999999999999996   344456676654

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=99.44  E-value=1e-13  Score=130.77  Aligned_cols=108  Identities=13%  Similarity=0.262  Sum_probs=87.4

Q ss_pred             CccccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhh-hhhcCCceeeCHHHHhcCCcEEEEcC----CCcccC
Q psy4626          72 DVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICAL-QACMDGFSVVKLNEVIRTVDIVVTAT----GNKNVV  146 (542)
Q Consensus        72 ~~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~-~A~~~G~~v~~l~e~l~~aDvVi~at----G~~~lI  146 (542)
                      +..+.|++++|+|+|.||+.+|+.+++||++|+++|+.+.... .....+....+++++++.+|+|+.+.    .|+++|
T Consensus        42 ~~~l~g~tvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~~~~~~~~~~~l~~ll~~sD~v~l~~plt~~T~~li  121 (191)
T d1gdha1          42 GEKLDNKTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRASSSDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFF  121 (191)
T ss_dssp             BCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCCCHHHHHHHTCEECSSHHHHHHHCSEEEECCCCCTTTTTCB
T ss_pred             cceecccceEEeecccchHHHHHHHHhhccccccccccccccchhhcccccccCCHHHHHhhCCeEEecCCCCchHhhee
Confidence            3567899999999999999999999999999999997654332 22233445678999999999999953    588999


Q ss_pred             CHHHHhccCCCeEEEeccCCC---cccChHhhcCCC
Q psy4626         147 TREHMDKMKNGCVVCNMGHSN---TEIDVNSLRTPD  179 (542)
Q Consensus       147 ~~e~l~~mk~GailvnvG~g~---~eid~~aL~~~~  179 (542)
                      +++.|+.||+|+++||+|||.   .+..+++|..+.
T Consensus       122 ~~~~l~~mk~~a~lIN~sRG~ivde~aL~~aL~~g~  157 (191)
T d1gdha1         122 NKATIKSLPQGAIVVNTARGDLVDNELVVAALEAGR  157 (191)
T ss_dssp             SHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTS
T ss_pred             cHHHhhCcCCccEEEecCCccchhhHHHHHHHHcCC
Confidence            999999999999999999996   344456666543

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.44  E-value=1.2e-13  Score=129.13  Aligned_cols=100  Identities=22%  Similarity=0.312  Sum_probs=82.3

Q ss_pred             cccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCCcEEEEcC----CCcccCCHH
Q psy4626          74 MFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTAT----GNKNVVTRE  149 (542)
Q Consensus        74 ~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~aDvVi~at----G~~~lI~~e  149 (542)
                      .+.|++|+|+|+|.||+.+|+.+++||++|+++|+++...     ......+++++++.+|+|+.+.    .|+++|+.+
T Consensus        39 ~l~gk~vgIiG~G~IG~~va~~l~~~g~~v~~~d~~~~~~-----~~~~~~~l~ell~~sDiv~~~~pl~~~t~~li~~~  113 (181)
T d1qp8a1          39 LIQGEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPKEG-----PWRFTNSLEEALREARAAVCALPLNKHTRGLVKYQ  113 (181)
T ss_dssp             CCTTCEEEEESCSTHHHHHHHHHHHTTCEEEEECSSCCCS-----SSCCBSCSHHHHTTCSEEEECCCCSTTTTTCBCHH
T ss_pred             cccCceEEEeccccccccceeeeecccccccccccccccc-----ceeeeechhhhhhccchhhcccccccccccccccc
Confidence            4789999999999999999999999999999999776421     1123457899999999999954    588999999


Q ss_pred             HHhccCCCeEEEeccCCCc---ccChHhhcCC
Q psy4626         150 HMDKMKNGCVVCNMGHSNT---EIDVNSLRTP  178 (542)
Q Consensus       150 ~l~~mk~GailvnvG~g~~---eid~~aL~~~  178 (542)
                      .|+.||+|+++||+|||+.   +..+++|..+
T Consensus       114 ~l~~mk~~ailIN~~RG~ivd~~aL~~aL~~~  145 (181)
T d1qp8a1         114 HLALMAEDAVFVNVGRAEVLDRDGVLRILKER  145 (181)
T ss_dssp             HHTTSCTTCEEEECSCGGGBCHHHHHHHHHHC
T ss_pred             eeeeccccceEEeccccccccchhhhhhcccC
Confidence            9999999999999999962   3334455543

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=99.42  E-value=2.1e-13  Score=128.03  Aligned_cols=109  Identities=12%  Similarity=0.136  Sum_probs=88.2

Q ss_pred             CccccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCC-ceeeCHHHHhcCCcEEEEcC----CCcccC
Q psy4626          72 DVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDG-FSVVKLNEVIRTVDIVVTAT----GNKNVV  146 (542)
Q Consensus        72 ~~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G-~~v~~l~e~l~~aDvVi~at----G~~~lI  146 (542)
                      ...+.|++++|+|+|.||+.+|+.|++||++|+++|+.+.........+ ....+++++++.+|+|+.+.    .|+++|
T Consensus        39 ~~~l~~~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~~~~~~~~~~~l~~~l~~sD~v~~~~plt~~T~~li  118 (188)
T d2naca1          39 AYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMI  118 (188)
T ss_dssp             CCCCTTCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCCHHHHHHHTCEECSSHHHHGGGCSEEEECSCCCTTTTTCB
T ss_pred             ceeccccceeeccccccchhhhhhhhccCceEEEEeeccccccccccccccccCCHHHHHHhccchhhcccccccchhhh
Confidence            3568999999999999999999999999999999997654333333333 34678999999999999953    478999


Q ss_pred             CHHHHhccCCCeEEEeccCCC---cccChHhhcCCCc
Q psy4626         147 TREHMDKMKNGCVVCNMGHSN---TEIDVNSLRTPDL  180 (542)
Q Consensus       147 ~~e~l~~mk~GailvnvG~g~---~eid~~aL~~~~l  180 (542)
                      +.+.|+.||+|+++||+|||+   .+..+++|..+.+
T Consensus       119 ~~~~l~~mk~ga~lIN~aRG~ivd~~aL~~aL~~g~i  155 (188)
T d2naca1         119 NDETLKLFKRGAYIVNTARGKLCDRDAVARALESGRL  155 (188)
T ss_dssp             SHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHTTSE
T ss_pred             HHHHHHhCCCCCEEEecCchhhhhHHHHHHHHhCCCc
Confidence            999999999999999999996   3444566766543

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=99.39  E-value=4.3e-13  Score=125.80  Aligned_cols=105  Identities=20%  Similarity=0.337  Sum_probs=85.3

Q ss_pred             CccccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCCcEEEEcC----CCcccCC
Q psy4626          72 DVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTAT----GNKNVVT  147 (542)
Q Consensus        72 ~~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~aDvVi~at----G~~~lI~  147 (542)
                      ...+.|++|+|+|+|.||+.+|+.+++||++|+++|+.+...   ......+.+++++++.+|+|+.+.    .|.++|+
T Consensus        39 ~~~l~~~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~---~~~~~~~~~l~ell~~sDii~i~~plt~~T~~li~  115 (188)
T d1sc6a1          39 SFEARGKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLP---LGNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMG  115 (188)
T ss_dssp             CCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCC---CTTCEECSCHHHHHHHCSEEEECCCSSTTTTTCBC
T ss_pred             cccccceEEEEeecccchhhhhhhcccccceEeeccccccch---hhhhhhhhhHHHHHhhccceeecccCCcchhhhcc
Confidence            346889999999999999999999999999999999654322   123345668999999999999953    4779999


Q ss_pred             HHHHhccCCCeEEEeccCCC---cccChHhhcCCC
Q psy4626         148 REHMDKMKNGCVVCNMGHSN---TEIDVNSLRTPD  179 (542)
Q Consensus       148 ~e~l~~mk~GailvnvG~g~---~eid~~aL~~~~  179 (542)
                      ++.|+.||+++++||+|||+   .+..+++|..+.
T Consensus       116 ~~~l~~mk~~a~lIN~aRG~lvde~aL~~aL~~~~  150 (188)
T d1sc6a1         116 AKEISLMKPGSLLINASRGTVVDIPALADALASKH  150 (188)
T ss_dssp             HHHHHHSCTTEEEEECSCSSSBCHHHHHHHHHTTS
T ss_pred             HHHHhhCCCCCEEEEcCcHHhhhhHHHHHHHHcCC
Confidence            99999999999999999996   233345666543

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=99.37  E-value=4.8e-13  Score=122.06  Aligned_cols=137  Identities=17%  Similarity=0.245  Sum_probs=104.3

Q ss_pred             HHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceee---C-----HHH---Hh--
Q psy4626          64 IDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVV---K-----LNE---VI--  130 (542)
Q Consensus        64 ~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~---~-----l~e---~l--  130 (542)
                      +|++.+..  ..+|++|+|+|.|+||..+++.++.+|++|+++|+++.|+..++..|....   +     ..+   .+  
T Consensus        16 ~~a~~~~~--~~~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~~~ga~~~~~~~~~~~~~~~~~~~~~~   93 (170)
T d1e3ja2          16 VHACRRAG--VQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRS   93 (170)
T ss_dssp             HHHHHHHT--CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHH
T ss_pred             HHHHHHhC--CCCCCEEEEEcccccchhhHhhHhhhcccccccchHHHHHHHHHHcCCcEEEeccccccccchhhhhhhc
Confidence            66777663  468999999999999999999999999999999999999988888886421   1     111   12  


Q ss_pred             ---cCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCCC--cccChHhhcCCCcceeeeccceeeEecCCCCEEEEecC
Q psy4626         131 ---RTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSN--TEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIVLLAE  205 (542)
Q Consensus       131 ---~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g~--~eid~~aL~~~~l~v~~~~~~v~~y~~~dg~~I~LLa~  205 (542)
                         .++|++|+|+|.+..++ +.++.+++++.++.+|..+  ..+++..+..+++++.++..+...|    .+.+.|+++
T Consensus        94 ~~g~g~D~vid~~g~~~~~~-~a~~~~~~~G~iv~~G~~~~~~~~~~~~~~~k~i~i~gs~~~~~~~----~~ai~li~~  168 (170)
T d1e3ja2          94 AIGDLPNVTIDCSGNEKCIT-IGINITRTGGTLMLVGMGSQMVTVPLVNACAREIDIKSVFRYCNDY----PIALEMVAS  168 (170)
T ss_dssp             HSSSCCSEEEECSCCHHHHH-HHHHHSCTTCEEEECSCCSSCCCCCHHHHHTTTCEEEECCSCSSCH----HHHHHHHHT
T ss_pred             ccccCCceeeecCCChHHHH-HHHHHHhcCCceEEEecCCCCCCcCHHHHHHCCCEEEEEECCHHHH----HHHHHHHHc
Confidence               46999999999988775 7899999999999999875  4677777777788777654322222    234555555


Q ss_pred             CC
Q psy4626         206 GR  207 (542)
Q Consensus       206 Gr  207 (542)
                      ||
T Consensus       169 Gk  170 (170)
T d1e3ja2         169 GR  170 (170)
T ss_dssp             TS
T ss_pred             CC
Confidence            54

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=4.7e-13  Score=122.66  Aligned_cols=139  Identities=17%  Similarity=0.266  Sum_probs=108.0

Q ss_pred             HHHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCCC-EEEEEeCCchhhhhhhcCCceee------CHHHH---h--
Q psy4626          63 IIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMDGFSVV------KLNEV---I--  130 (542)
Q Consensus        63 ~~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga-~Viv~d~dp~r~~~A~~~G~~v~------~l~e~---l--  130 (542)
                      .+|++.++.  ..+|++|+|+|.|++|..+++.++.+|+ +|+++|+++.|+..|++.|++.+      +..+.   +  
T Consensus        15 a~~a~~~~~--~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~~~~~~~   92 (171)
T d1pl8a2          15 GIHACRRGG--VTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEG   92 (171)
T ss_dssp             HHHHHHHHT--CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHH
T ss_pred             HHHHHHHhC--CCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHhCCcccccccccccccccccccc
Confidence            367777762  4579999999999999999999999999 89999999999999999998632      12221   1  


Q ss_pred             ---cCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCCC--cccChHhhcCCCcceeeeccceeeEecCCCCEEEEecC
Q psy4626         131 ---RTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSN--TEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIVLLAE  205 (542)
Q Consensus       131 ---~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g~--~eid~~aL~~~~l~v~~~~~~v~~y~~~dg~~I~LLa~  205 (542)
                         .++|++|+|+|+...++ ..++.+++|+.++.+|...  ..+++..+..+++++.++..+...|    .+.+.++++
T Consensus        93 ~~g~g~Dvvid~~G~~~~~~-~a~~~~~~gG~iv~~G~~~~~~~~~~~~~~~k~l~i~Gs~~~~~~~----~~al~li~~  167 (171)
T d1pl8a2          93 QLGCKPEVTIECTGAEASIQ-AGIYATRSGGTLVLVGLGSEMTTVPLLHAAIREVDIKGVFRYCNTW----PVAISMLAS  167 (171)
T ss_dssp             HHTSCCSEEEECSCCHHHHH-HHHHHSCTTCEEEECSCCCSCCCCCHHHHHHTTCEEEECCSCSSCH----HHHHHHHHT
T ss_pred             cCCCCceEEEeccCCchhHH-HHHHHhcCCCEEEEEecCCCCCccCHHHHHHCCcEEEEEeCCHhHH----HHHHHHHHc
Confidence               37899999999988774 7899999999999999864  5677777767788887764322211    356667777


Q ss_pred             CCc
Q psy4626         206 GRL  208 (542)
Q Consensus       206 GrL  208 (542)
                      |++
T Consensus       168 gki  170 (171)
T d1pl8a2         168 KSV  170 (171)
T ss_dssp             TSC
T ss_pred             CCC
Confidence            765

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=99.12  E-value=1.6e-11  Score=112.52  Aligned_cols=125  Identities=16%  Similarity=0.196  Sum_probs=98.3

Q ss_pred             HHHHHHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCCC-EEEEEeCCchhhhhhhcCCce-eeCH-----HHHh--
Q psy4626          60 RESIIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMDGFS-VVKL-----NEVI--  130 (542)
Q Consensus        60 ~~s~~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga-~Viv~d~dp~r~~~A~~~G~~-v~~l-----~e~l--  130 (542)
                      +...||++.+......+|++|+|+|.|++|..+++.++.+|+ +|+++|.++.|+..+...|.+ +++.     ++..  
T Consensus        16 ~~Ta~~al~~~~~~~~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~~   95 (172)
T d1h2ba2          16 GITAYRAVKKAARTLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGADHVVDARRDPVKQVMEL   95 (172)
T ss_dssp             HHHHHHHHHHHHTTCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTTCSEEEETTSCHHHHHHHH
T ss_pred             HHHHHHHHHHhhhccCCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhcccceeecCcccHHHHHHHh
Confidence            355688888765445689999999999999999999999997 788899999998888888875 3322     2222  


Q ss_pred             ---cCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCCC-cccChHhhcCCCcceeee
Q psy4626         131 ---RTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSN-TEIDVNSLRTPDLTWEKV  185 (542)
Q Consensus       131 ---~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g~-~eid~~aL~~~~l~v~~~  185 (542)
                         .++|++|+++|....++ ..++.+++++.++.+|.++ .+++...+..+++++.++
T Consensus        96 ~~~~g~d~vid~~g~~~~~~-~a~~~l~~~G~iv~~G~~~~~~~~~~~l~~k~~~i~Gs  153 (172)
T d1h2ba2          96 TRGRGVNVAMDFVGSQATVD-YTPYLLGRMGRLIIVGYGGELRFPTIRVISSEVSFEGS  153 (172)
T ss_dssp             TTTCCEEEEEESSCCHHHHH-HGGGGEEEEEEEEECCCSSCCCCCHHHHHHTTCEEEEC
T ss_pred             hCCCCceEEEEecCcchHHH-HHHHHHhCCCEEEEEeCcccccCCHHHHHhCCcEEEEE
Confidence               46999999999887774 7899999999999999764 566776666666666654

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.10  E-value=1.1e-10  Score=106.41  Aligned_cols=121  Identities=16%  Similarity=0.180  Sum_probs=91.7

Q ss_pred             HHHHHHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce-eeCH-H------HHhc
Q psy4626          60 RESIIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVKL-N------EVIR  131 (542)
Q Consensus        60 ~~s~~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~-v~~l-~------e~l~  131 (542)
                      +...|++++++  ...+|++|+|+|.|++|..+++.++.+|++|+++|.++.|...++..|++ +++. +      ....
T Consensus        13 g~Ta~~al~~~--~~~~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~k~~~a~~lGa~~~i~~~~~~~~~~~~~~   90 (168)
T d1piwa2          13 GLTVYSPLVRN--GCGPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKMGADHYIATLEEGDWGEKYFD   90 (168)
T ss_dssp             HHHHHHHHHHT--TCSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCSEEEEGGGTSCHHHHSCS
T ss_pred             HHHHHHHHHHh--CcCCCCEEEEECCCCcchhHHHHhhhccccccccccchhHHHHhhccCCcEEeeccchHHHHHhhhc
Confidence            45678888775  34689999999999999999999999999999999999999989888875 3322 1      1236


Q ss_pred             CCcEEEEcCCCcc--cCCHHHHhccCCCeEEEeccCCC--cccChHhhcCCCccee
Q psy4626         132 TVDIVVTATGNKN--VVTREHMDKMKNGCVVCNMGHSN--TEIDVNSLRTPDLTWE  183 (542)
Q Consensus       132 ~aDvVi~atG~~~--lI~~e~l~~mk~GailvnvG~g~--~eid~~aL~~~~l~v~  183 (542)
                      ..|++++|+|...  .++ ..++.+++++.++.+|..+  .++++..+..+++++.
T Consensus        91 ~~d~vi~~~~~~~~~~~~-~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~k~~~i~  145 (168)
T d1piwa2          91 TFDLIVVCASSLTDIDFN-IMPKAMKVGGRIVSISIPEQHEMLSLKPYGLKAVSIS  145 (168)
T ss_dssp             CEEEEEECCSCSTTCCTT-TGGGGEEEEEEEEECCCCCSSCCEEECGGGCBSCEEE
T ss_pred             ccceEEEEecCCccchHH-HHHHHhhccceEEEeccccccccccHHHHHhCCcEEE
Confidence            7899999877543  343 6789999999999999764  3444444443444433

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=99.04  E-value=3.8e-10  Score=102.63  Aligned_cols=123  Identities=14%  Similarity=0.134  Sum_probs=93.9

Q ss_pred             HHHHHHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce-eeCH---H---HHhcC
Q psy4626          60 RESIIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVKL---N---EVIRT  132 (542)
Q Consensus        60 ~~s~~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~-v~~l---~---e~l~~  132 (542)
                      +...|++++++  ...+|++|+|+|.|++|...++.++.+|+++++++.++.+...+...|++ +++.   +   ...++
T Consensus        16 g~Tay~al~~~--~~~~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~~~~~a~~lGad~~i~~~~~~~~~~~~~~   93 (168)
T d1uufa2          16 GITTYSPLRHW--QAGPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKALGADEVVNSRNADEMAAHLKS   93 (168)
T ss_dssp             HHHHHHHHHHT--TCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCSEEEETTCHHHHHTTTTC
T ss_pred             HHHHHHHHHHh--CCCCCCEEEEeccchHHHHHHHHhhcccccchhhccchhHHHHHhccCCcEEEECchhhHHHHhcCC
Confidence            44568888765  35689999999999999999999999999999999999988888888876 3321   1   22368


Q ss_pred             CcEEEEcCCCcccCCHHHHhccCCCeEEEeccCCC---cccChHhhcCCCcceeee
Q psy4626         133 VDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSN---TEIDVNSLRTPDLTWEKV  185 (542)
Q Consensus       133 aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g~---~eid~~aL~~~~l~v~~~  185 (542)
                      .|++|+++|....++ ..++.+++++.++.+|...   ..++...+..+++++.++
T Consensus        94 ~D~vid~~g~~~~~~-~~~~~l~~~G~iv~~G~~~~~~~~~~~~~l~~k~~~i~Gs  148 (168)
T d1uufa2          94 FDFILNTVAAPHNLD-DFTTLLKRDGTMTLVGAPATPHKSPEVFNLIMKRRAIAGS  148 (168)
T ss_dssp             EEEEEECCSSCCCHH-HHHTTEEEEEEEEECCCC-------CHHHHHTTTCEEEEC
T ss_pred             CceeeeeeecchhHH-HHHHHHhcCCEEEEeccCCCCcccccHHHHHHCCcEEEEE
Confidence            999999999877774 7899999999999998753   344555565555554443

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=99.02  E-value=5.9e-11  Score=108.96  Aligned_cols=124  Identities=19%  Similarity=0.176  Sum_probs=95.3

Q ss_pred             HHHHHHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCCC-EEEEEeCCchhhhhhhcCCce-eeC-----HHHHh--
Q psy4626          60 RESIIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMDGFS-VVK-----LNEVI--  130 (542)
Q Consensus        60 ~~s~~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga-~Viv~d~dp~r~~~A~~~G~~-v~~-----l~e~l--  130 (542)
                      ....|+++.+..+ ..+|++|+|+|+|+||..+++.++.+|+ +|+++|.++.|+..+++.|+. +++     ..+.+  
T Consensus        13 ~~Ta~~a~~~~~~-~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~i~~   91 (174)
T d1f8fa2          13 IQTGAGACINALK-VTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVINSKTQDPVAAIKE   91 (174)
T ss_dssp             HHHHHHHHHTTTC-CCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHH
T ss_pred             HHHHHHHHHHhhC-CCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHcCCeEEEeCCCcCHHHHHHH
Confidence            3556777665543 4689999999999999999999999999 667789999998888888874 432     22222  


Q ss_pred             ---cCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCCC----cccChHhhcCCCcceeee
Q psy4626         131 ---RTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSN----TEIDVNSLRTPDLTWEKV  185 (542)
Q Consensus       131 ---~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g~----~eid~~aL~~~~l~v~~~  185 (542)
                         .++|++|+|+|+...+. +.++.+++++.++.+|...    .+++...+..+++++.++
T Consensus        92 ~t~gg~D~vid~~G~~~~~~-~~~~~~~~~G~i~~~G~~~~~~~~~~~~~~~~~k~~~i~Gs  152 (174)
T d1f8fa2          92 ITDGGVNFALESTGSPEILK-QGVDALGILGKIAVVGAPQLGTTAQFDVNDLLLGGKTILGV  152 (174)
T ss_dssp             HTTSCEEEEEECSCCHHHHH-HHHHTEEEEEEEEECCCCSTTCCCCCCHHHHHHTTCEEEEC
T ss_pred             HcCCCCcEEEEcCCcHHHHH-HHHhcccCceEEEEEeecCCCcccccCHHHHHHCCCEEEEE
Confidence               35899999999987774 7899999999999998642    356766666566666554

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.02  E-value=4.8e-10  Score=101.46  Aligned_cols=122  Identities=17%  Similarity=0.171  Sum_probs=95.7

Q ss_pred             HHHHHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce-eeC-----HHHH----h
Q psy4626          61 ESIIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVK-----LNEV----I  130 (542)
Q Consensus        61 ~s~~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~-v~~-----l~e~----l  130 (542)
                      ...|++++++  ...+|++|+|+|.|+||..+++.++.+|++|+++|+++.|+..+...|++ +++     ..+.    .
T Consensus        14 ~Ta~~al~~~--~~~~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~~~~~a~~~Ga~~~i~~~~~~~~~~~~~~~   91 (166)
T d1llua2          14 VTVYKGLKQT--NARPGQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDAKLELARKLGASLTVNARQEDPVEAIQRDI   91 (166)
T ss_dssp             HHHHHHHHHH--TCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHH
T ss_pred             HHHHHHHHHh--CCCCCCEEEEeeccccHHHHHHHHHHcCCccceecchhhHHHhhhccCccccccccchhHHHHHHHhh
Confidence            4567888776  24689999999999999999999999999999999999999888888875 332     2122    2


Q ss_pred             cCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCCC--cccChHhhcCCCcceeee
Q psy4626         131 RTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSN--TEIDVNSLRTPDLTWEKV  185 (542)
Q Consensus       131 ~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g~--~eid~~aL~~~~l~v~~~  185 (542)
                      .+.|.++++++....++ +.++.+++++.++.+|...  .+++...+..+++++.++
T Consensus        92 ~g~~~~i~~~~~~~~~~-~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~k~~~i~Gs  147 (166)
T d1llua2          92 GGAHGVLVTAVSNSAFG-QAIGMARRGGTIALVGLPPGDFPTPIFDVVLKGLHIAGS  147 (166)
T ss_dssp             SSEEEEEECCSCHHHHH-HHHTTEEEEEEEEECCCCSSEEEEEHHHHHHTTCEEEEC
T ss_pred             cCCcccccccccchHHH-HHHHHhcCCcEEEEEEecCCCccCCHHHHHhCCcEEEEE
Confidence            56788888888777774 7899999999999999654  456666666566666554

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=99.00  E-value=6.4e-10  Score=102.33  Aligned_cols=124  Identities=20%  Similarity=0.285  Sum_probs=93.0

Q ss_pred             HHHHHHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCCC-EEEEEeCCchhhhhhhcCCce-eeC-----HHH----
Q psy4626          60 RESIIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMDGFS-VVK-----LNE----  128 (542)
Q Consensus        60 ~~s~~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga-~Viv~d~dp~r~~~A~~~G~~-v~~-----l~e----  128 (542)
                      +-..|+++.+.. ...+|++|+|+|+|+||..+++.++.+|+ +|+++|+++.|...+.+.|++ +++     ..+    
T Consensus        13 ~~ta~~al~~~~-~~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~   91 (182)
T d1vj0a2          13 GATAYHAFDEYP-ESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGADLTLNRRETSVEERRKA   91 (182)
T ss_dssp             HHHHHHHHHTCS-SCCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHH
T ss_pred             HHHHHHHHHHHh-CCCCCCEEEEECCCccchhheecccccccccccccccccccccccccccceEEEeccccchHHHHHH
Confidence            345678876543 34589999999999999999999999998 899999999999889888875 332     111    


Q ss_pred             Hh-----cCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCCC--ccc--Ch-HhhcCCCcceeee
Q psy4626         129 VI-----RTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSN--TEI--DV-NSLRTPDLTWEKV  185 (542)
Q Consensus       129 ~l-----~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g~--~ei--d~-~aL~~~~l~v~~~  185 (542)
                      +.     .++|+||+|+|++..+ ...++.+++|+.++.+|.+.  .++  +. ..+..+++++.++
T Consensus        92 i~~~~~~~g~Dvvid~vG~~~~~-~~a~~~l~~~G~iv~~G~~~~~~~~~~~~~~~l~~k~l~i~G~  157 (182)
T d1vj0a2          92 IMDITHGRGADFILEATGDSRAL-LEGSELLRRGGFYSVAGVAVPQDPVPFKVYEWLVLKNATFKGI  157 (182)
T ss_dssp             HHHHTTTSCEEEEEECSSCTTHH-HHHHHHEEEEEEEEECCCCSCCCCEEECHHHHTTTTTCEEEEC
T ss_pred             HHHhhCCCCceEEeecCCchhHH-HHHHHHhcCCCEEEEEeecCCCCccccccHHHHHHCCcEEEEE
Confidence            11     3689999999987777 47899999999999988642  233  32 2344455555543

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=98.97  E-value=1.2e-09  Score=100.58  Aligned_cols=109  Identities=19%  Similarity=0.181  Sum_probs=87.8

Q ss_pred             HHH-HHHHHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCCC-EEEEEeCCchhhhhhhcCCce-eeCH-------H
Q psy4626          58 MCR-ESIIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMDGFS-VVKL-------N  127 (542)
Q Consensus        58 g~~-~s~~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga-~Viv~d~dp~r~~~A~~~G~~-v~~l-------~  127 (542)
                      +|. ...|+++.+.. ...+|++|+|+|+|+||...++.++.+|+ +|+++|+++.|+..|+..|+. +++.       .
T Consensus        10 ~Ca~~T~~~a~~~~a-~v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~Ga~~~i~~~~~~~~~~   88 (174)
T d1e3ia2          10 GCGFSSGYGAAINTA-KVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCLNPRELDKPVQ   88 (174)
T ss_dssp             GTHHHHHHHHHHTTS-CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHH
T ss_pred             hhHHHHHHHHHHHhh-CCCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHhCCCcccCCccchhhhh
Confidence            453 55677775543 35689999999999999999999999999 799999999999999999875 3332       1


Q ss_pred             HHh-----cCCcEEEEcCCCcccCCHHHHhccCCC-eEEEeccCCCc
Q psy4626         128 EVI-----RTVDIVVTATGNKNVVTREHMDKMKNG-CVVCNMGHSNT  168 (542)
Q Consensus       128 e~l-----~~aDvVi~atG~~~lI~~e~l~~mk~G-ailvnvG~g~~  168 (542)
                      ...     .++|++|+|+|++..++ +.++.+++| +.++.+|....
T Consensus        89 ~~~~~~~~~G~d~vie~~G~~~~~~-~a~~~~~~g~G~~v~vG~~~~  134 (174)
T d1e3ia2          89 DVITELTAGGVDYSLDCAGTAQTLK-AAVDCTVLGWGSCTVVGAKVD  134 (174)
T ss_dssp             HHHHHHHTSCBSEEEESSCCHHHHH-HHHHTBCTTTCEEEECCCSSS
T ss_pred             hhHhhhhcCCCcEEEEecccchHHH-HHHHHhhcCCeEEEecCCCCC
Confidence            111     58999999999988885 789999886 89999997653

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.96  E-value=1.9e-10  Score=103.83  Aligned_cols=121  Identities=17%  Similarity=0.153  Sum_probs=92.5

Q ss_pred             HHHHHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceee-C-----HHH----Hh
Q psy4626          61 ESIIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVV-K-----LNE----VI  130 (542)
Q Consensus        61 ~s~~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~-~-----l~e----~l  130 (542)
                      ...|++++++.  ..+|++|+|.|.|+||..+++.++..|++|++++.++.|...++..|++.+ +     ..+    ..
T Consensus        14 ~Ta~~al~~~~--~~~g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~k~~Ga~~~~~~~~~~~~~~~~~~~   91 (168)
T d1rjwa2          14 VTTYKALKVTG--AKPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKELGADLVVNPLKEDAAKFMKEKV   91 (168)
T ss_dssp             HHHHHHHHHHT--CCTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCSEEECTTTSCHHHHHHHHH
T ss_pred             HHHHHHHHHhC--CCCCCEEEEeecccchhhhhHHHhcCCCeEeccCCCHHHhhhhhhcCcceecccccchhhhhccccc
Confidence            34577777653  458999999999999999999999999999999999999998989998643 2     222    23


Q ss_pred             cCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCCCc--ccChHhhcCCCcceee
Q psy4626         131 RTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNT--EIDVNSLRTPDLTWEK  184 (542)
Q Consensus       131 ~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g~~--eid~~aL~~~~l~v~~  184 (542)
                      .+.|.++++++....++ ..++.+++++.++.+|..+.  .++...+..+++++.+
T Consensus        92 ~~~~~~v~~~~~~~~~~-~a~~~l~~~G~i~~~g~~~~~~~~~~~~~~~~~~~i~g  146 (168)
T d1rjwa2          92 GGVHAAVVTAVSKPAFQ-SAYNSIRRGGACVLVGLPPEEMPIPIFDTVLNGIKIIG  146 (168)
T ss_dssp             SSEEEEEESSCCHHHHH-HHHHHEEEEEEEEECCCCSSEEEEEHHHHHHTTCEEEE
T ss_pred             CCCceEEeecCCHHHHH-HHHHHhccCCceEecccccCCCCCCHHHHHHCCcEEEE
Confidence            56777788888777774 78999999999999997653  4444444444444443

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=98.94  E-value=1.9e-10  Score=104.57  Aligned_cols=122  Identities=12%  Similarity=0.155  Sum_probs=95.3

Q ss_pred             HHHHHHHHhhcCccccCcEEEEEcC-ChhHHHHHHHHHhCCC-EEEEEeCCchhhhhhhcCCce-eeC-----H-HHHh-
Q psy4626          61 ESIIDSLKRSTDVMFGGKQVVLCGY-GEVGKGCCQSLKGLGC-VIYITEIDPICALQACMDGFS-VVK-----L-NEVI-  130 (542)
Q Consensus        61 ~s~~~ai~r~~~~~l~GktVvViG~-G~IG~~vA~~l~~~Ga-~Viv~d~dp~r~~~A~~~G~~-v~~-----l-~e~l-  130 (542)
                      ...++++++.  ...+|++|+|+|. |++|..+++.++..|. +|++++.++.|...+...|++ +++     . ++.. 
T Consensus        14 ~Ta~~al~~~--~~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~   91 (170)
T d1jvba2          14 ITTYRAVRKA--SLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGADYVINASMQDPLAEIRR   91 (170)
T ss_dssp             HHHHHHHHHT--TCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHH
T ss_pred             HHHHHHHHHh--CCCCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHcCCceeeccCCcCHHHHHHH
Confidence            4567788775  3568999999995 9999999999999995 999999999998888888874 222     2 2221 


Q ss_pred             ----cCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCCC--cccChHhhcCCCcceeee
Q psy4626         131 ----RTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSN--TEIDVNSLRTPDLTWEKV  185 (542)
Q Consensus       131 ----~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g~--~eid~~aL~~~~l~v~~~  185 (542)
                          ..+|++++|+|....++ ..++.+++++.++.+|...  .+++...+..+++++.++
T Consensus        92 ~~~~~~~d~vid~~g~~~~~~-~a~~~l~~~G~iv~~G~~~~~~~~~~~~~~~k~i~i~Gs  151 (170)
T d1jvba2          92 ITESKGVDAVIDLNNSEKTLS-VYPKALAKQGKYVMVGLFGADLHYHAPLITLSEIQFVGS  151 (170)
T ss_dssp             HTTTSCEEEEEESCCCHHHHT-TGGGGEEEEEEEEECCSSCCCCCCCHHHHHHHTCEEEEC
T ss_pred             HhhcccchhhhcccccchHHH-hhhhhcccCCEEEEeccccCccccCHHHHHhCCcEEEEE
Confidence                46899999999888776 6899999999999998763  567766665555655544

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=98.93  E-value=6.3e-10  Score=102.37  Aligned_cols=101  Identities=23%  Similarity=0.315  Sum_probs=83.9

Q ss_pred             HHHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCCC-EEEEEeCCchhhhhhhcCCce-eeCH-----HHHh-----
Q psy4626          63 IIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMDGFS-VVKL-----NEVI-----  130 (542)
Q Consensus        63 ~~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga-~Viv~d~dp~r~~~A~~~G~~-v~~l-----~e~l-----  130 (542)
                      .|++++++  ...+|++|+|+|+|+||..+++.++.+|+ +|+++|.++.|+..+...|++ +++.     .+.+     
T Consensus        16 a~~a~~~a--~~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~lGa~~~i~~~~~~~~~~v~~~t~   93 (174)
T d1jqba2          16 GFHGAELA--DIEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGATDILNYKNGHIEDQVMKLTN   93 (174)
T ss_dssp             HHHHHHHT--TCCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHHTCSEEECGGGSCHHHHHHHHTT
T ss_pred             HHHHHHHh--CCCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhhCccccccccchhHHHHHHHHhh
Confidence            47777765  34589999999999999999999999998 799999999999888888864 4432     2221     


Q ss_pred             -cCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCC
Q psy4626         131 -RTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHS  166 (542)
Q Consensus       131 -~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g  166 (542)
                       .++|++|+|+|.+..++ +.++.+++++.++.+|..
T Consensus        94 g~G~D~vid~~g~~~~~~-~a~~~~~~~G~iv~~G~~  129 (174)
T d1jqba2          94 GKGVDRVIMAGGGSETLS-QAVKMVKPGGIISNINYH  129 (174)
T ss_dssp             TSCEEEEEECSSCTTHHH-HHHHHEEEEEEEEECCCC
T ss_pred             ccCcceEEEccCCHHHHH-HHHHHHhcCCEEEEEeec
Confidence             36999999999888774 789999999999999965

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=98.86  E-value=2.7e-09  Score=97.51  Aligned_cols=118  Identities=19%  Similarity=0.240  Sum_probs=87.6

Q ss_pred             HHHHHHHHhhcCccccCcEEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce-eeCHHHH------hcC
Q psy4626          61 ESIIDSLKRSTDVMFGGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVKLNEV------IRT  132 (542)
Q Consensus        61 ~s~~~ai~r~~~~~l~GktVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~-v~~l~e~------l~~  132 (542)
                      ...|+++.+.  ...+|++|+|.|. |++|+.+++.++.+|++|++++.++.+...+...|++ +++..+.      -.+
T Consensus        14 ~TA~~al~~~--~~~~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~g   91 (171)
T d1iz0a2          14 LTAYLALKRA--QARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLALGAEEAATYAEVPERAKAWGG   91 (171)
T ss_dssp             HHHHHHHHHT--TCCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHHTTCSEEEEGGGHHHHHHHTTS
T ss_pred             HHHHHHHHHh--CCCCCCEEEEEeccccchhhhhhhhcccccccccccccccccccccccccceeeehhhhhhhhhcccc
Confidence            3456777664  3468999999995 9999999999999999999999999888888888885 4443221      268


Q ss_pred             CcEEEEcCCCcccCCHHHHhccCCCeEEEeccCCC---cccChHhhcCCCccee
Q psy4626         133 VDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSN---TEIDVNSLRTPDLTWE  183 (542)
Q Consensus       133 aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g~---~eid~~aL~~~~l~v~  183 (542)
                      +|+|++++|.  .+ .+.++.+++++.++.+|..+   .+++...+..+++++.
T Consensus        92 ~D~v~d~~G~--~~-~~~~~~l~~~G~~v~~G~~~g~~~~~~~~~~~~k~~~i~  142 (171)
T d1iz0a2          92 LDLVLEVRGK--EV-EESLGLLAHGGRLVYIGAAEGEVAPIPPLRLMRRNLAVL  142 (171)
T ss_dssp             EEEEEECSCT--TH-HHHHTTEEEEEEEEEC-------CCCCTTHHHHTTCEEE
T ss_pred             ccccccccch--hH-HHHHHHHhcCCcEEEEeCCCCCCCCccHHHHHHCCcEEE
Confidence            9999999884  45 47899999999999998642   3555555544444443

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=98.83  E-value=1e-08  Score=95.09  Aligned_cols=91  Identities=24%  Similarity=0.348  Sum_probs=75.1

Q ss_pred             ccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeC-----------------------------
Q psy4626          75 FGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVK-----------------------------  125 (542)
Q Consensus        75 l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~-----------------------------  125 (542)
                      .+..+|+|+|.|..|+..++.++++|++|.++|+++.++.+....+...++                             
T Consensus        27 V~pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~~~~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~~~~~  106 (183)
T d1l7da1          27 VPPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQAE  106 (183)
T ss_dssp             ECCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHTTCEECCC-----------------------CCHHH
T ss_pred             cCCcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhhcceEEEeccccccccccccchhhcCHHHHHHHHH
Confidence            456799999999999999999999999999999999888776666543321                             


Q ss_pred             -HHHHhcCCcEEEEcC---C--CcccCCHHHHhccCCCeEEEeccC
Q psy4626         126 -LNEVIRTVDIVVTAT---G--NKNVVTREHMDKMKNGCVVCNMGH  165 (542)
Q Consensus       126 -l~e~l~~aDvVi~at---G--~~~lI~~e~l~~mk~GailvnvG~  165 (542)
                       +.+.++++|+||.+.   |  .+.+|++++++.||+|++++.++.
T Consensus       107 ~l~~~l~~aDlVI~talipG~~aP~lit~~mv~~Mk~GSVIVDvai  152 (183)
T d1l7da1         107 AVLKELVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVIIDLAV  152 (183)
T ss_dssp             HHHHHHTTCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEEETTG
T ss_pred             HHHHHHHhhhhheeeeecCCcccceeehHHHHHhcCCCcEEEEEee
Confidence             123467899999964   3  667899999999999999999884

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=98.80  E-value=6.5e-09  Score=95.15  Aligned_cols=90  Identities=20%  Similarity=0.298  Sum_probs=74.2

Q ss_pred             cCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCC---cee--e---CHHHHhcCCcEEEEcC---C--C
Q psy4626          76 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDG---FSV--V---KLNEVIRTVDIVVTAT---G--N  142 (542)
Q Consensus        76 ~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G---~~v--~---~l~e~l~~aDvVi~at---G--~  142 (542)
                      +..+|+|+|.|..|+..++.++.+|++|.++|.++.++.+.....   .+.  .   .+++.++++|+||.+.   |  .
T Consensus        31 ~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~aDivI~aalipG~~a  110 (168)
T d1pjca1          31 KPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSRVELLYSNSAEIETAVAEADLLIGAVLVPGRRA  110 (168)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGSEEEECCHHHHHHHHHTCSEEEECCCCTTSSC
T ss_pred             CCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHhhcccceeehhhhhhHHHhhccCcEEEEeeecCCccc
Confidence            467999999999999999999999999999999998876543321   111  1   2456789999999974   3  6


Q ss_pred             cccCCHHHHhccCCCeEEEeccC
Q psy4626         143 KNVVTREHMDKMKNGCVVCNMGH  165 (542)
Q Consensus       143 ~~lI~~e~l~~mk~GailvnvG~  165 (542)
                      +.+|++++++.||+|++++.++-
T Consensus       111 P~lIt~~mv~~Mk~GSVIVDvai  133 (168)
T d1pjca1         111 PILVPASLVEQMRTGSVIVDVAV  133 (168)
T ss_dssp             CCCBCHHHHTTSCTTCEEEETTC
T ss_pred             CeeecHHHHhhcCCCcEEEEeec
Confidence            78999999999999999999884

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=98.77  E-value=1e-08  Score=95.84  Aligned_cols=102  Identities=23%  Similarity=0.288  Sum_probs=81.6

Q ss_pred             HHHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCCC-EEEEEeCCchhhhhhhcCCceee-C-----HH----HHh-
Q psy4626          63 IIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMDGFSVV-K-----LN----EVI-  130 (542)
Q Consensus        63 ~~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga-~Viv~d~dp~r~~~A~~~G~~v~-~-----l~----e~l-  130 (542)
                      .|+++.++  ..-+|++|+|+|+|++|...++.++.+|+ +|+++|.++.|+..|...|++.+ +     +.    +.. 
T Consensus        14 a~~a~~~a--~v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~i~~~t~   91 (195)
T d1kola2          14 GYHGAVTA--GVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFEIADLSLDTPLHEQIAALLG   91 (195)
T ss_dssp             HHHHHHHT--TCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCEEEETTSSSCHHHHHHHHHS
T ss_pred             HHHHHHHh--CCCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhccccEEEeCCCcCHHHHHHHHhC
Confidence            36677665  34689999999999999999999999998 89999999999999999998743 2     11    122 


Q ss_pred             -cCCcEEEEcCCCc---------------ccCCHHHHhccCCCeEEEeccCCC
Q psy4626         131 -RTVDIVVTATGNK---------------NVVTREHMDKMKNGCVVCNMGHSN  167 (542)
Q Consensus       131 -~~aDvVi~atG~~---------------~lI~~e~l~~mk~GailvnvG~g~  167 (542)
                       .++|++|+++|.+               ..+ .+.++.+++|+.++.+|.+.
T Consensus        92 g~g~D~vid~vG~~~~~~~~~~~~~~~~~~~l-~~~~~~~r~gG~v~~~G~~~  143 (195)
T d1kola2          92 EPEVDCAVDAVGFEARGHGHEGAKHEAPATVL-NSLMQVTRVAGKIGIPGLYV  143 (195)
T ss_dssp             SSCEEEEEECCCTTCBCSSTTGGGSBCTTHHH-HHHHHHEEEEEEEEECSCCC
T ss_pred             CCCcEEEEECccccccCCcccceeecCcHHHH-HHHHHHHhcCCEEEEeeecC
Confidence             4799999998832               244 36788899999999999753

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=98.73  E-value=2.1e-08  Score=92.01  Aligned_cols=105  Identities=16%  Similarity=0.175  Sum_probs=83.1

Q ss_pred             HHHHHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCCC-EEEEEeCCchhhhhhhcCCce-eeCH-------HHH--
Q psy4626          61 ESIIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMDGFS-VVKL-------NEV--  129 (542)
Q Consensus        61 ~s~~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga-~Viv~d~dp~r~~~A~~~G~~-v~~l-------~e~--  129 (542)
                      ...|+++.+..+ ..+|++|+|+|.|++|...++.++.+|+ +|+++|+++.|+..|++.|++ +++.       ++.  
T Consensus        15 ~T~~~Av~~~~~-~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~GA~~~in~~~~~~~~~~~~~   93 (176)
T d1d1ta2          15 STGYGAAVKTGK-VKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGATECISPKDSTKPISEVLS   93 (176)
T ss_dssp             HHHHHHHHTTSC-CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHH
T ss_pred             HHHHHHHHHhhC-CCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhcCCcEEECccccchHHHHHHH
Confidence            455788765433 5689999999999999999999999996 999999999999999999986 4332       111  


Q ss_pred             -h--cCCcEEEEcCCCcccCCHHHHhcc-CCCeEEEeccCCC
Q psy4626         130 -I--RTVDIVVTATGNKNVVTREHMDKM-KNGCVVCNMGHSN  167 (542)
Q Consensus       130 -l--~~aDvVi~atG~~~lI~~e~l~~m-k~GailvnvG~g~  167 (542)
                       .  .++|++|+++|....+. +.+..+ ++++.++.+|...
T Consensus        94 ~~~g~G~d~vi~~~g~~~~~~-~a~~~~~~~~G~~v~vG~~~  134 (176)
T d1d1ta2          94 EMTGNNVGYTFEVIGHLETMI-DALASCHMNYGTSVVVGVPP  134 (176)
T ss_dssp             HHHTSCCCEEEECSCCHHHHH-HHHTTSCTTTCEEEECSCCC
T ss_pred             HhccccceEEEEeCCchHHHH-HHHHHhhcCCeEEEEEEccc
Confidence             1  58999999999877663 556666 5558999999763

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=98.73  E-value=2.8e-09  Score=100.25  Aligned_cols=94  Identities=16%  Similarity=0.315  Sum_probs=82.0

Q ss_pred             hcCCcccc----ccccccHHHHhhcCCC--CCCCCCCCccccCCeeeeehhhhcccCcEEEE----ccCCCCccCHhHHh
Q psy4626         261 LHLPTFDA----HLTELSDEQAKYMGLN--KAGPFKPSYYSMDGFSVVKLNEVIRTVDIVVT----ATGNKNVVTREHMD  330 (542)
Q Consensus       261 l~L~~lg~----~i~~lt~~~a~~lg~~--e~~p~~a~ea~mdG~~v~~~~~a~~~~d~~~t----~tg~~~vi~~~~~~  330 (542)
                      +..+++|+    .|++..+++++++|+.  -.||++..+...+++.+.+++++++++|+++.    ++.++++|+.+.|+
T Consensus        41 l~gk~vgIiG~G~IG~~va~~l~~fg~~V~~~d~~~~~~~~~~~~~~~~l~~~l~~sDii~~~~plt~~T~~li~~~~l~  120 (197)
T d1j4aa1          41 VRDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRNPELEKKGYYVDSLDDLYKQADVISLHVPDVPANVHMINDESIA  120 (197)
T ss_dssp             GGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCHHHHHTTCBCSCHHHHHHHCSEEEECSCCCGGGTTCBSHHHHH
T ss_pred             ccCCeEEEecccccchhHHHhHhhhcccccccCcccccccccceeeeccccccccccccccccCCccccccccccHHHHh
Confidence            45567777    9999999999999995  35788888888899999999999999999998    67899999999999


Q ss_pred             cCCCCcEEEccCCCCcccccccccC
Q psy4626         331 KMKNGCVVCNMGHSNTEIDVNSLRT  355 (542)
Q Consensus       331 ~mk~gail~n~gh~~~Ei~~~~l~~  355 (542)
                      .||+|++++|+||+.+ ||-++|.+
T Consensus       121 ~mk~~a~lIN~sRG~i-vde~aL~~  144 (197)
T d1j4aa1         121 KMKQDVVIVNVSRGPL-VDTDAVIR  144 (197)
T ss_dssp             HSCTTEEEEECSCGGG-BCHHHHHH
T ss_pred             hhCCccEEEecCchhh-hhhHHHHH
Confidence            9999999999999998 67666543

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=98.72  E-value=4.5e-08  Score=92.15  Aligned_cols=99  Identities=18%  Similarity=0.243  Sum_probs=79.8

Q ss_pred             HHHHHHHHHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHHHHh-cCCcE
Q psy4626          57 YMCRESIIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVI-RTVDI  135 (542)
Q Consensus        57 ~g~~~s~~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l-~~aDv  135 (542)
                      ||+-.++-.++++.....+.|+||+|-|+|.+|..+|+.|..+|++|+++|.|+.+...+...|...++.++++ ..|||
T Consensus         7 ~Gv~~~~~~~~~~~g~~~L~gk~v~IqG~G~VG~~~A~~L~~~Gakvvv~d~d~~~~~~~~~~g~~~~~~~~~~~~~~DI   86 (201)
T d1c1da1           7 VGVFEAMKATVAHRGLGSLDGLTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTERVAHAVALGHTAVALEDVLSTPCDV   86 (201)
T ss_dssp             HHHHHHHHHHHHHTTCCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECCGGGGGGCCCSE
T ss_pred             HHHHHHHHHHHHHhCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEecchHHHHHHHHhhcccccCcccccccccee
Confidence            34444443333333223689999999999999999999999999999999999998888888899999999887 58999


Q ss_pred             EEEcCCCcccCCHHHHhccCC
Q psy4626         136 VVTATGNKNVVTREHMDKMKN  156 (542)
Q Consensus       136 Vi~atG~~~lI~~e~l~~mk~  156 (542)
                      ++-|. ..+.|+.+..+.++-
T Consensus        87 ~iPcA-~~~~I~~~~a~~i~a  106 (201)
T d1c1da1          87 FAPCA-MGGVITTEVARTLDC  106 (201)
T ss_dssp             EEECS-CSCCBCHHHHHHCCC
T ss_pred             eeccc-ccccccHHHHhhhhh
Confidence            99875 446899888888864

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=98.70  E-value=3.7e-08  Score=90.14  Aligned_cols=104  Identities=18%  Similarity=0.154  Sum_probs=82.1

Q ss_pred             HHHHHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCCC-EEEEEeCCchhhhhhhcCCce-eeCH-------HHHh-
Q psy4626          61 ESIIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMDGFS-VVKL-------NEVI-  130 (542)
Q Consensus        61 ~s~~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga-~Viv~d~dp~r~~~A~~~G~~-v~~l-------~e~l-  130 (542)
                      ...|+++.+.. ...+|++|+|+|+|++|...++.++.+|+ +|+++|+++.|+..+...|++ +++.       ++.. 
T Consensus        13 ~Ta~~a~~~~a-~~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~lGa~~~i~~~~~d~~~~~~~~   91 (174)
T d1p0fa2          13 ATGYGAAVNTA-KVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATECLNPKDYDKPIYEVIC   91 (174)
T ss_dssp             HHHHHHHHTTT-CCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHH
T ss_pred             HHHHHHHHHhh-CCCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHcCCcEEEcCCCchhHHHHHHH
Confidence            44577765433 35789999999999999999999999997 899999999999999999986 4432       2221 


Q ss_pred             ----cCCcEEEEcCCCcccCCHHHHhccCC-CeEEEeccCC
Q psy4626         131 ----RTVDIVVTATGNKNVVTREHMDKMKN-GCVVCNMGHS  166 (542)
Q Consensus       131 ----~~aDvVi~atG~~~lI~~e~l~~mk~-GailvnvG~g  166 (542)
                          .+.|++|+++|....+. +.+..+++ ++.++.+|..
T Consensus        92 ~~~~~G~d~vid~~g~~~~~~-~~~~~~~~~~G~~v~vG~~  131 (174)
T d1p0fa2          92 EKTNGGVDYAVECAGRIETMM-NALQSTYCGSGVTVVLGLA  131 (174)
T ss_dssp             HHTTSCBSEEEECSCCHHHHH-HHHHTBCTTTCEEEECCCC
T ss_pred             HhcCCCCcEEEEcCCCchHHH-HHHHHHHHhcCceEEEEEe
Confidence                47999999999987774 56666654 5888888865

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.69  E-value=2.9e-08  Score=90.32  Aligned_cols=120  Identities=20%  Similarity=0.243  Sum_probs=89.2

Q ss_pred             HHHHHHHHhhcCccccCcEEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce-eeC-----HHHHh---
Q psy4626          61 ESIIDSLKRSTDVMFGGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVK-----LNEVI---  130 (542)
Q Consensus        61 ~s~~~ai~r~~~~~l~GktVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~-v~~-----l~e~l---  130 (542)
                      ...|+++.+..+ ..+|++|+|.|. |++|..+.+.++.+|++|++++.++.+...+++.|++ +++     +.+.+   
T Consensus        14 ~TA~~al~~~~~-~~~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~i~~~   92 (174)
T d1yb5a2          14 FTAYRALIHSAC-VKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQNGAHEVFNHREVNYIDKIKKY   92 (174)
T ss_dssp             HHHHHHHHTTSC-CCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTSTTHHHHHHHH
T ss_pred             HHHHHHHHHHhC-CCCCCEEEEEeccccccccccccccccCcccccccccccccccccccCcccccccccccHHHHhhhh
Confidence            345677655432 458999999996 9999999999999999999999888888888888875 332     22222   


Q ss_pred             ---cCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCCC-cccChHhhcCCCccee
Q psy4626         131 ---RTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSN-TEIDVNSLRTPDLTWE  183 (542)
Q Consensus       131 ---~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g~-~eid~~aL~~~~l~v~  183 (542)
                         .+.|++++++|.. .+ .+.++.+++++.++.+|..+ .+++...+..+++++.
T Consensus        93 t~~~g~d~v~d~~g~~-~~-~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~k~~~i~  147 (174)
T d1yb5a2          93 VGEKGIDIIIEMLANV-NL-SKDLSLLSHGGRVIVVGSRGTIEINPRDTMAKESSII  147 (174)
T ss_dssp             HCTTCEEEEEESCHHH-HH-HHHHHHEEEEEEEEECCCCSCEEECTHHHHTTTCEEE
T ss_pred             hccCCceEEeecccHH-HH-HHHHhccCCCCEEEEEecCCCCCCCHHHHHHCCCEEE
Confidence               4689999999854 45 36899999999999998653 4555555554444443

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=98.61  E-value=2.1e-08  Score=90.97  Aligned_cols=104  Identities=18%  Similarity=0.240  Sum_probs=79.4

Q ss_pred             HHHHHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCCC-EEEEEeCCchhhhhhhcCCce-eeCH-------HHHh-
Q psy4626          61 ESIIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMDGFS-VVKL-------NEVI-  130 (542)
Q Consensus        61 ~s~~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga-~Viv~d~dp~r~~~A~~~G~~-v~~l-------~e~l-  130 (542)
                      ...|+++.+.. ...+|++|+|+|.|++|..+++.++..|+ +|+++|+++.|+..+...|++ +++.       ++.. 
T Consensus        14 ~Tay~a~~~~a-~~k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~~GAd~~in~~~~~~~~~~~~~   92 (175)
T d1cdoa2          14 STGFGAAVNTA-KVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGATDFVNPNDHSEPISQVLS   92 (175)
T ss_dssp             HHHHHHHHTTT-CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCCEEECGGGCSSCHHHHHH
T ss_pred             HHHHHHHHHhh-CCCCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHHcCCcEEEcCCCcchhHHHHHH
Confidence            45677875543 35689999999999999999999999988 899999999999999999985 4432       1211 


Q ss_pred             ----cCCcEEEEcCCCcccCCHHHHhccC-CCeEEEeccCC
Q psy4626         131 ----RTVDIVVTATGNKNVVTREHMDKMK-NGCVVCNMGHS  166 (542)
Q Consensus       131 ----~~aDvVi~atG~~~lI~~e~l~~mk-~GailvnvG~g  166 (542)
                          .++|++++++|....+. ..+..++ .+++++..|..
T Consensus        93 ~~~~~G~d~vid~~G~~~~~~-~a~~~~~~g~~~~~~~g~~  132 (175)
T d1cdoa2          93 KMTNGGVDFSLECVGNVGVMR-NALESCLKGWGVSVLVGWT  132 (175)
T ss_dssp             HHHTSCBSEEEECSCCHHHHH-HHHHTBCTTTCEEEECSCC
T ss_pred             hhccCCcceeeeecCCHHHHH-HHHHHhhCCCcceeEEEec
Confidence                47999999999877764 5566654 45666666654

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=98.50  E-value=3.5e-07  Score=82.96  Aligned_cols=107  Identities=20%  Similarity=0.215  Sum_probs=81.8

Q ss_pred             HHH-HHHHHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCCC-EEEEEeCCchhhhhhhcCCce-eeCH-------H
Q psy4626          58 MCR-ESIIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMDGFS-VVKL-------N  127 (542)
Q Consensus        58 g~~-~s~~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga-~Viv~d~dp~r~~~A~~~G~~-v~~l-------~  127 (542)
                      +|. ...|+++.+..+ ..+|++|+|+|.|.+|...++.++.+|+ +|+++++++.|...+.+.|+. +++.       .
T Consensus        10 ~ca~~Tay~al~~~~~-vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~   88 (176)
T d2jhfa2          10 GCGFSTGYGSAVKVAK-VTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNPQDYKKPIQ   88 (176)
T ss_dssp             GTHHHHHHHHHHTTTC-CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHH
T ss_pred             hcHHHHHHHHHHHhhC-CCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHhCCeeEEecCCchhHHH
Confidence            443 556888765433 5689999999999999999999999996 999999999999988888875 3321       1


Q ss_pred             HHh-----cCCcEEEEcCCCcccCCHHHHhccCCC-eEEEeccCC
Q psy4626         128 EVI-----RTVDIVVTATGNKNVVTREHMDKMKNG-CVVCNMGHS  166 (542)
Q Consensus       128 e~l-----~~aDvVi~atG~~~lI~~e~l~~mk~G-ailvnvG~g  166 (542)
                      +..     .++|++|+++|....+. ..+..++++ +.++..+..
T Consensus        89 ~~~~~~~~~G~D~vid~~G~~~~~~-~a~~~~~~~~g~~~~~~~~  132 (176)
T d2jhfa2          89 EVLTEMSNGGVDFSFEVIGRLDTMV-TALSCCQEAYGVSVIVGVP  132 (176)
T ss_dssp             HHHHHHTTSCBSEEEECSCCHHHHH-HHHHHBCTTTCEEEECSCC
T ss_pred             HHHHHHhcCCCCEEEecCCchhHHH-HHHHHHhcCCcceEEecCC
Confidence            111     47999999999987774 677778775 555555544

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=98.49  E-value=1.1e-07  Score=87.96  Aligned_cols=91  Identities=13%  Similarity=0.142  Sum_probs=70.8

Q ss_pred             hcCCcccc----ccccccHHHHhhcCCC--CCCCCCCCccccCCeeeeehhhhcccCcEEEE----ccCCCCccCHhHHh
Q psy4626         261 LHLPTFDA----HLTELSDEQAKYMGLN--KAGPFKPSYYSMDGFSVVKLNEVIRTVDIVVT----ATGNKNVVTREHMD  330 (542)
Q Consensus       261 l~L~~lg~----~i~~lt~~~a~~lg~~--e~~p~~a~ea~mdG~~v~~~~~a~~~~d~~~t----~tg~~~vi~~~~~~  330 (542)
                      +..+++|+    .|++-.++.++.+|+.  ..||... +.  +.....+++|+++++|+|++    +..|+++|+.+.|.
T Consensus        40 l~gk~vgIiG~G~IG~~va~~l~~~g~~v~~~d~~~~-~~--~~~~~~~l~ell~~sDiv~~~~pl~~~t~~li~~~~l~  116 (181)
T d1qp8a1          40 IQGEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPK-EG--PWRFTNSLEEALREARAAVCALPLNKHTRGLVKYQHLA  116 (181)
T ss_dssp             CTTCEEEEESCSTHHHHHHHHHHHTTCEEEEECSSCC-CS--SSCCBSCSHHHHTTCSEEEECCCCSTTTTTCBCHHHHT
T ss_pred             ccCceEEEeccccccccceeeeecccccccccccccc-cc--ceeeeechhhhhhccchhhcccccccccccccccceee
Confidence            45567777    8999999999999993  2234322 22  11223478999999999999    56899999999999


Q ss_pred             cCCCCcEEEccCCCCcccccccccC
Q psy4626         331 KMKNGCVVCNMGHSNTEIDVNSLRT  355 (542)
Q Consensus       331 ~mk~gail~n~gh~~~Ei~~~~l~~  355 (542)
                      .||+|++++|+||+++ ||-++|-+
T Consensus       117 ~mk~~ailIN~~RG~i-vd~~aL~~  140 (181)
T d1qp8a1         117 LMAEDAVFVNVGRAEV-LDRDGVLR  140 (181)
T ss_dssp             TSCTTCEEEECSCGGG-BCHHHHHH
T ss_pred             eccccceEEecccccc-ccchhhhh
Confidence            9999999999999998 77666543

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=98.48  E-value=2.1e-07  Score=83.96  Aligned_cols=105  Identities=20%  Similarity=0.206  Sum_probs=81.1

Q ss_pred             HHH-HHHHHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCCC-EEEEEeCCchhhhhhhcCCce-eeCH-------H
Q psy4626          58 MCR-ESIIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMDGFS-VVKL-------N  127 (542)
Q Consensus        58 g~~-~s~~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga-~Viv~d~dp~r~~~A~~~G~~-v~~l-------~  127 (542)
                      +|. ...|+++.+..+ ..+|++|+|.|.|.+|...++.++.+|+ +|++++.++.|...+++.|++ +++.       .
T Consensus        10 ~ca~~Tay~al~~~~~-~~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~lGa~~~i~~~~~~~~~~   88 (176)
T d2fzwa2          10 GCGISTGYGAAVNTAK-LEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECINPQDFSKPIQ   88 (176)
T ss_dssp             GTHHHHHHHHHHTTTC-CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHH
T ss_pred             hcHHHHHHHHHHHhhC-CCCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHhCCcEEEeCCchhhHHH
Confidence            443 456888765433 4689999999999999999999999997 888899999998888888875 3322       1


Q ss_pred             HHh-----cCCcEEEEcCCCcccCCHHHHhccCCCeEEEecc
Q psy4626         128 EVI-----RTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMG  164 (542)
Q Consensus       128 e~l-----~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG  164 (542)
                      +.+     .++|++|+++|....+. ..+..+++|+.++.++
T Consensus        89 ~~~~~~~~~g~D~vid~~G~~~~~~-~~~~~~~~g~~~~~v~  129 (176)
T d2fzwa2          89 EVLIEMTDGGVDYSFECIGNVKVMR-AALEACHKGWGVSVVV  129 (176)
T ss_dssp             HHHHHHTTSCBSEEEECSCCHHHHH-HHHHTBCTTTCEEEEC
T ss_pred             HHHHHHcCCCCcEeeecCCCHHHHH-HHHHhhcCCceeEEEE
Confidence            122     57999999999887774 6788888886665544

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=98.46  E-value=3.4e-08  Score=92.72  Aligned_cols=93  Identities=20%  Similarity=0.345  Sum_probs=76.3

Q ss_pred             hcCCcccc----ccccccHHHHhhcCCCC--CCCCCCCccccCCeeeeehhhhcccCcEEEE----ccCCCCccCHhHHh
Q psy4626         261 LHLPTFDA----HLTELSDEQAKYMGLNK--AGPFKPSYYSMDGFSVVKLNEVIRTVDIVVT----ATGNKNVVTREHMD  330 (542)
Q Consensus       261 l~L~~lg~----~i~~lt~~~a~~lg~~e--~~p~~a~ea~mdG~~v~~~~~a~~~~d~~~t----~tg~~~vi~~~~~~  330 (542)
                      +..+++|+    +|++..+++++++|+..  .||+.... ...++...+++++++.+|+++.    +..++++|+.+.|.
T Consensus        43 l~~ktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~-~~~~~~~~~l~~l~~~~D~v~~~~plt~~T~~li~~~~l~  121 (199)
T d1dxya1          43 LGQQTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYPMKG-DHPDFDYVSLEDLFKQSDVIDLHVPGIEQNTHIINEAAFN  121 (199)
T ss_dssp             GGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSS-CCTTCEECCHHHHHHHCSEEEECCCCCGGGTTSBCHHHHH
T ss_pred             ccceeeeeeecccccccccccccccceeeeccCCccchh-hhcchhHHHHHHHHHhcccceeeecccccccccccHHHhh
Confidence            44566776    99999999999999953  45654433 3456777899999999999998    56788999999999


Q ss_pred             cCCCCcEEEccCCCCcccccccccC
Q psy4626         331 KMKNGCVVCNMGHSNTEIDVNSLRT  355 (542)
Q Consensus       331 ~mk~gail~n~gh~~~Ei~~~~l~~  355 (542)
                      +||+|++|+|+||+.+ ||-++|-+
T Consensus       122 ~mk~~a~lIN~aRG~v-vde~aL~~  145 (199)
T d1dxya1         122 LMKPGAIVINTARPNL-IDTQAMLS  145 (199)
T ss_dssp             HSCTTEEEEECSCTTS-BCHHHHHH
T ss_pred             ccCCceEEEecccHhh-hhhHHHHH
Confidence            9999999999999998 78666653

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=98.45  E-value=3.1e-08  Score=92.65  Aligned_cols=94  Identities=17%  Similarity=0.263  Sum_probs=74.3

Q ss_pred             HhcCCcccc----ccccccHHHHhhcCCCC--CCCCCCCcc--ccCCeeeeehhhhcccCcEEEE----ccCCCCccCHh
Q psy4626         260 SLHLPTFDA----HLTELSDEQAKYMGLNK--AGPFKPSYY--SMDGFSVVKLNEVIRTVDIVVT----ATGNKNVVTRE  327 (542)
Q Consensus       260 ~l~L~~lg~----~i~~lt~~~a~~lg~~e--~~p~~a~ea--~mdG~~v~~~~~a~~~~d~~~t----~tg~~~vi~~~  327 (542)
                      ++..+++|+    +|++..+++++++|+..  .||+...+.  ...-..+.+++|+++.+|+|+.    +..++++|+.+
T Consensus        46 eL~gktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~~~~~~~~~~l~~ll~~sD~i~~~~plt~~T~~li~~~  125 (193)
T d1mx3a1          46 RIRGETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSDGVERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDF  125 (193)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCTTHHHHHTCEECSSHHHHHHHCSEEEECCCCCTTCTTSBSHH
T ss_pred             eeeCceEEEeccccccccceeeeeccccceeeccCcccccchhhhccccccchhhccccCCEEEEeecccccchhhhhHH
Confidence            355577777    99999999999999953  356544332  2223345679999999999988    67899999999


Q ss_pred             HHhcCCCCcEEEccCCCCccccccccc
Q psy4626         328 HMDKMKNGCVVCNMGHSNTEIDVNSLR  354 (542)
Q Consensus       328 ~~~~mk~gail~n~gh~~~Ei~~~~l~  354 (542)
                      .|+.||+||+++|+||+.+ ||-++|-
T Consensus       126 ~l~~mk~~a~lIN~sRG~i-vde~aL~  151 (193)
T d1mx3a1         126 TVKQMRQGAFLVNTARGGL-VDEKALA  151 (193)
T ss_dssp             HHTTSCTTEEEEECSCTTS-BCHHHHH
T ss_pred             HHhccCCCCeEEecCCceE-EcHHHHH
Confidence            9999999999999999997 5655554

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=98.42  E-value=2.4e-07  Score=83.15  Aligned_cols=88  Identities=11%  Similarity=0.158  Sum_probs=71.7

Q ss_pred             EEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCc--eeeCHHHHhcCCcEEEEcCCC---cccCCHHHHhc
Q psy4626          79 QVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGF--SVVKLNEVIRTVDIVVTATGN---KNVVTREHMDK  153 (542)
Q Consensus        79 tVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~--~v~~l~e~l~~aDvVi~atG~---~~lI~~e~l~~  153 (542)
                      +|+|||+|.+|..+|+.|+..|.+|+++|+++.+...+...|.  ...+..++++.+|+||.|+-.   ..++ .+..+.
T Consensus         2 kI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~~~~~~a~~~~~~~~~~~~~~~~~~~DiIilavp~~~~~~vl-~~l~~~   80 (165)
T d2f1ka2           2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQLVDEAGQDLSLLQTAKIIFLCTPIQLILPTL-EKLIPH   80 (165)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTSCSEEESCGGGGTTCSEEEECSCHHHHHHHH-HHHGGG
T ss_pred             EEEEEeecHHHHHHHHHHHHCCCEEEEEECCchHHHHHHHhhccceeeeecccccccccccccCcHhhhhhhh-hhhhhh
Confidence            6999999999999999999999999999999988877777774  244555778999999998742   2344 356677


Q ss_pred             cCCCeEEEeccCCC
Q psy4626         154 MKNGCVVCNMGHSN  167 (542)
Q Consensus       154 mk~GailvnvG~g~  167 (542)
                      ++++.++++++...
T Consensus        81 l~~~~iv~~~~s~~   94 (165)
T d2f1ka2          81 LSPTAIVTDVASVK   94 (165)
T ss_dssp             SCTTCEEEECCSCC
T ss_pred             cccccceeeccccc
Confidence            89999999998654

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.42  E-value=6.4e-08  Score=89.68  Aligned_cols=85  Identities=14%  Similarity=0.310  Sum_probs=71.0

Q ss_pred             cCCcccc----ccccccHHHHhhcCCC--CCCCCCC-CccccCCeeeeehhhhcccCcEEEE----ccCCCCccCHhHHh
Q psy4626         262 HLPTFDA----HLTELSDEQAKYMGLN--KAGPFKP-SYYSMDGFSVVKLNEVIRTVDIVVT----ATGNKNVVTREHMD  330 (542)
Q Consensus       262 ~L~~lg~----~i~~lt~~~a~~lg~~--e~~p~~a-~ea~mdG~~v~~~~~a~~~~d~~~t----~tg~~~vi~~~~~~  330 (542)
                      ..+++|+    .|++..+++++++|+.  -.||+.. .+..-.+++..+++|++++||||+.    +..|+++|+.+.|.
T Consensus        43 ~~k~vgiiG~G~IG~~va~~~~~fg~~v~~~d~~~~~~~~~~~~~~~~~l~ell~~sDiv~~~~Plt~~T~~lin~~~l~  122 (184)
T d1ygya1          43 FGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVSPARAAQLGIELLSLDDLLARADFISVHLPKTPETAGLIDKEALA  122 (184)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCHHHHHHHTCEECCHHHHHHHCSEEEECCCCSTTTTTCBCHHHHT
T ss_pred             cceeeeeccccchhHHHHHHhhhccceEEeecCCCChhHHhhcCceeccHHHHHhhCCEEEEcCCCCchhhhhhhHHHHh
Confidence            4456666    8999999999999994  3355543 2334567888899999999999998    68899999999999


Q ss_pred             cCCCCcEEEccCCCCc
Q psy4626         331 KMKNGCVVCNMGHSNT  346 (542)
Q Consensus       331 ~mk~gail~n~gh~~~  346 (542)
                      .||+||+|+|+||+.+
T Consensus       123 ~mk~~a~lIN~sRG~i  138 (184)
T d1ygya1         123 KTKPGVIIVNAARGGL  138 (184)
T ss_dssp             TSCTTEEEEECSCTTS
T ss_pred             hhCCCceEEEecchhh
Confidence            9999999999999987

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.38  E-value=4e-07  Score=81.79  Aligned_cols=89  Identities=19%  Similarity=0.306  Sum_probs=73.6

Q ss_pred             EEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCcee-eCHHHHhcCCcEEEEcCCCcccCC------HHHH
Q psy4626          79 QVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV-VKLNEVIRTVDIVVTATGNKNVVT------REHM  151 (542)
Q Consensus        79 tVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v-~~l~e~l~~aDvVi~atG~~~lI~------~e~l  151 (542)
                      +|+|||+|.+|..+|+.|...|.+|++||+++.+.......+... .+..++++.+|+||.|..+...+.      ...+
T Consensus         2 kIgiIGlG~MG~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~e~~~~~d~ii~~v~~~~~v~~v~~~~~~~~   81 (161)
T d1vpda2           2 KVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVIITMLPNSPHVKEVALGENGII   81 (161)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCHH
T ss_pred             EEEEEehhHHHHHHHHHHHHCCCeEEEEeCCcchhHHHHHhhhhhcccHHHHHhCCCeEEEEcCCHHHHHHHHhCCcchh
Confidence            699999999999999999999999999999999887777777664 467888999999999976543332      1246


Q ss_pred             hccCCCeEEEeccCCC
Q psy4626         152 DKMKNGCVVCNMGHSN  167 (542)
Q Consensus       152 ~~mk~GailvnvG~g~  167 (542)
                      ..+++|.++++.+...
T Consensus        82 ~~~~~g~iiid~sT~~   97 (161)
T d1vpda2          82 EGAKPGTVLIDMSSIA   97 (161)
T ss_dssp             HHCCTTCEEEECSCCC
T ss_pred             hccCCCCEEEECCCCC
Confidence            6789999999988764

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=98.32  E-value=8.2e-07  Score=80.77  Aligned_cols=110  Identities=18%  Similarity=0.156  Sum_probs=85.0

Q ss_pred             ccccCcEEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce-eeCHHHH----h-----cCCcEEEEcCC
Q psy4626          73 VMFGGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVKLNEV----I-----RTVDIVVTATG  141 (542)
Q Consensus        73 ~~l~GktVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~-v~~l~e~----l-----~~aDvVi~atG  141 (542)
                      ....|.+|+|-|. |.+|..+.|.++.+|++|+.+..++.+...+...|.+ +++.++.    +     ++.|+|+++.|
T Consensus        20 ~~~~~~~VLV~gaaGgVG~~avQlAk~~Ga~Viat~~s~~k~~~~~~lGad~vi~~~~~~~~~~~~~~~~gvd~vid~vg   99 (167)
T d1tt7a2          20 LSPEKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYLKQLGASEVISREDVYDGTLKALSKQQWQGAVDPVG   99 (167)
T ss_dssp             CCGGGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHHHHHTCSEEEEHHHHCSSCCCSSCCCCEEEEEESCC
T ss_pred             CCCCCCEEEEeCCcchHHHHHHHHHHHcCCceEEEecCHHHHHHHHhhcccceEeccchhchhhhcccCCCceEEEecCc
Confidence            3456778999995 9999999999999999999999988888888888876 3443322    1     47999999998


Q ss_pred             CcccCCHHHHhccCCCeEEEeccCCC---cccChHhhcCCCcceee
Q psy4626         142 NKNVVTREHMDKMKNGCVVCNMGHSN---TEIDVNSLRTPDLTWEK  184 (542)
Q Consensus       142 ~~~lI~~e~l~~mk~GailvnvG~g~---~eid~~aL~~~~l~v~~  184 (542)
                      ... + .+.++.++++++++.+|...   .++++..+..+.+++.+
T Consensus       100 g~~-~-~~~~~~l~~~G~iv~~G~~~g~~~~~~~~~l~~k~~~i~G  143 (167)
T d1tt7a2         100 GKQ-L-ASLLSKIQYGGSVAVSGLTGGGEVPATVYPFILRGVSLLG  143 (167)
T ss_dssp             THH-H-HHHHTTEEEEEEEEECCCSSCSCEEECSHHHHTSCCEEEE
T ss_pred             HHH-H-HHHHHHhccCceEEEeeccCCCcccCCHHHHHHCCcEEEE
Confidence            653 3 47899999999999988653   46666666655555544

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=98.29  E-value=1.3e-06  Score=79.77  Aligned_cols=104  Identities=19%  Similarity=0.178  Sum_probs=82.0

Q ss_pred             HHHHHHHHHhhcCccccCcEEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCcee-eC------HHHHh-
Q psy4626          60 RESIIDSLKRSTDVMFGGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV-VK------LNEVI-  130 (542)
Q Consensus        60 ~~s~~~ai~r~~~~~l~GktVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v-~~------l~e~l-  130 (542)
                      +...|+++.+..+ ..+|++|+|.|. |.+|..+++.++..|++|+++..++.+...+...|++. ++      .+.++ 
T Consensus        14 glTA~~al~~~~~-v~~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~   92 (182)
T d1v3va2          14 GLTAYFGLLEVCG-VKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQIGFDAAFNYKTVNSLEEALK   92 (182)
T ss_dssp             HHHHHHHHHTTTC-CCSSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTSCSCHHHHHH
T ss_pred             HHHHHHHHHHHhC-CCCCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHHHHHHhhhhhhhcccccccHHHHHHH
Confidence            3566778776543 358999999999 66999999999999999999999988887788888762 22      12222 


Q ss_pred             ----cCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCC
Q psy4626         131 ----RTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHS  166 (542)
Q Consensus       131 ----~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g  166 (542)
                          .++|+|+++.|.. .+ .+.++.+++++.++.+|..
T Consensus        93 ~~~~~Gvd~v~D~vG~~-~~-~~~~~~l~~~G~~v~~G~~  130 (182)
T d1v3va2          93 KASPDGYDCYFDNVGGE-FL-NTVLSQMKDFGKIAICGAI  130 (182)
T ss_dssp             HHCTTCEEEEEESSCHH-HH-HHHGGGEEEEEEEEECCCG
T ss_pred             HhhcCCCceeEEecCch-hh-hhhhhhccCCCeEEeecce
Confidence                5799999999853 45 4789999999999999853

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.25  E-value=7.9e-07  Score=80.61  Aligned_cols=103  Identities=18%  Similarity=0.218  Sum_probs=80.2

Q ss_pred             HHHHHHHHhhcCccccCcEEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCcee-eC-----HHHHh---
Q psy4626          61 ESIIDSLKRSTDVMFGGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV-VK-----LNEVI---  130 (542)
Q Consensus        61 ~s~~~ai~r~~~~~l~GktVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v-~~-----l~e~l---  130 (542)
                      -..|+++.+.. ..-+|++|+|.|. |.+|..+++.++.+|++|+++..++.+...+...|++. ++     +.+.+   
T Consensus        11 ~TA~~al~~~~-~~~~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~~~~~l~~~Ga~~vi~~~~~~~~~~v~~~   89 (183)
T d1pqwa_          11 LTAWHSLCEVG-RLSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSRLGVEYVGDSRSVDFADEILEL   89 (183)
T ss_dssp             HHHHHHHHTTS-CCCTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHTTCCSEEEETTCSTHHHHHHHH
T ss_pred             HHHHHHHHHHh-CCCCCCEEEEECCCCCcccccchhhccccccceeeecccccccccccccccccccCCccCHHHHHHHH
Confidence            34567765543 3457999999885 99999999999999999999988888877787888753 22     22222   


Q ss_pred             ---cCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCC
Q psy4626         131 ---RTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHS  166 (542)
Q Consensus       131 ---~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g  166 (542)
                         .++|+++++.|.. .+ .+.++.++++++++++|..
T Consensus        90 t~~~g~d~v~d~~g~~-~~-~~~~~~l~~~G~~v~~G~~  126 (183)
T d1pqwa_          90 TDGYGVDVVLNSLAGE-AI-QRGVQILAPGGRFIELGKK  126 (183)
T ss_dssp             TTTCCEEEEEECCCTH-HH-HHHHHTEEEEEEEEECSCG
T ss_pred             hCCCCEEEEEecccch-HH-HHHHHHhcCCCEEEEEccC
Confidence               4799999999874 45 4789999999999999854

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=98.23  E-value=2.1e-06  Score=77.37  Aligned_cols=93  Identities=22%  Similarity=0.318  Sum_probs=73.0

Q ss_pred             cccCcEEEEEcCChhHHHHHHHHHhCCC-EEEEEeCCchhhh-hhhcCCceeeCH---HHHhcCCcEEEEcCCCc-ccCC
Q psy4626          74 MFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICAL-QACMDGFSVVKL---NEVIRTVDIVVTATGNK-NVVT  147 (542)
Q Consensus        74 ~l~GktVvViG~G~IG~~vA~~l~~~Ga-~Viv~d~dp~r~~-~A~~~G~~v~~l---~e~l~~aDvVi~atG~~-~lI~  147 (542)
                      .+.+++++|+|+|.+|+.+++.|...|+ +++++.++..++. .+...|..+.++   .+.+..+|+||.||+.+ ++++
T Consensus        21 ~l~~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt~~ka~~l~~~~~~~~~~~~~~~~~l~~~Divi~atss~~~ii~  100 (159)
T d1gpja2          21 SLHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGGEAVRFDELVDHLARSDVVVSATAAPHPVIH  100 (159)
T ss_dssp             CCTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTCEECCGGGHHHHHHTCSEEEECCSSSSCCBC
T ss_pred             CcccCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCcHHHHHHHHHhhhcccccchhHHHHhccCCEEEEecCCCCcccc
Confidence            4789999999999999999999999998 7999999887764 345556665554   45678999999999855 5788


Q ss_pred             HHHHhcc------CCCeEEEeccCC
Q psy4626         148 REHMDKM------KNGCVVCNMGHS  166 (542)
Q Consensus       148 ~e~l~~m------k~GailvnvG~g  166 (542)
                      .+.++..      ++..+++..|..
T Consensus       101 ~~~i~~~~~~r~~~~~~~iiDlavP  125 (159)
T d1gpja2         101 VDDVREALRKRDRRSPILIIDIANP  125 (159)
T ss_dssp             HHHHHHHHHHCSSCCCEEEEECCSS
T ss_pred             HhhhHHHHHhcccCCCeEEEeecCC
Confidence            7777532      234588898854

>d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Escherichia coli [TaxId: 562]

Probab=98.18  E-value=3.4e-06  Score=76.62  Aligned_cols=91  Identities=21%  Similarity=0.352  Sum_probs=73.8

Q ss_pred             HHHHHHHHHHhhcCccccCcEEEEEcCCh-hHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCCcEEE
Q psy4626          59 CRESIIDSLKRSTDVMFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVV  137 (542)
Q Consensus        59 ~~~s~~~ai~r~~~~~l~GktVvViG~G~-IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~aDvVi  137 (542)
                      |-.+++.-+. ..+..+.||+|+|+|-+. +|+-++..|...|++|++++...             .++.+.++.||++|
T Consensus        20 Tp~aI~~lL~-~y~i~l~GK~v~VIGrS~~VG~Pla~lL~~~gatVt~~h~~t-------------~~l~~~~~~ADivI   85 (166)
T d1b0aa1          20 TPRGIVTLLE-RYNIDTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFT-------------KNLRHHVENADLLI   85 (166)
T ss_dssp             HHHHHHHHHH-HTTCCCTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSC-------------SCHHHHHHHCSEEE
T ss_pred             hHHHHHHHHH-HcCcccccceEEEEeccccccHHHHHHHHHhhcccccccccc-------------chhHHHHhhhhHhh
Confidence            3455555443 346789999999999987 79999999999999999997322             34566778999999


Q ss_pred             EcCCCcccCCHHHHhccCCCeEEEeccCC
Q psy4626         138 TATGNKNVVTREHMDKMKNGCVVCNMGHS  166 (542)
Q Consensus       138 ~atG~~~lI~~e~l~~mk~GailvnvG~g  166 (542)
                      .++|.+++++.+   .+|+|++++++|..
T Consensus        86 ~a~G~p~~i~~~---~vk~g~vvIDvGi~  111 (166)
T d1b0aa1          86 VAVGKPGFIPGD---WIKEGAIVIDVGIN  111 (166)
T ss_dssp             ECSCCTTCBCTT---TSCTTCEEEECCCE
T ss_pred             hhccCccccccc---ccCCCcEEEecCce
Confidence            999999999854   57999999999964

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.15  E-value=3.2e-06  Score=75.84  Aligned_cols=90  Identities=16%  Similarity=0.251  Sum_probs=73.0

Q ss_pred             cEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce-eeCHHHHhcCCcEEEEcCCCcccCC------HHH
Q psy4626          78 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVKLNEVIRTVDIVVTATGNKNVVT------REH  150 (542)
Q Consensus        78 ktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~-v~~l~e~l~~aDvVi~atG~~~lI~------~e~  150 (542)
                      ++|+|||.|.+|..+|+.|...|.+|.+||+++.+.......+.. ..++.+++..+|+++.+......+.      ...
T Consensus         2 ~kIg~IGlG~MG~~iA~~L~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~~~e~~~~~diii~~v~~~~~~~~v~~~~~~~   81 (162)
T d3cuma2           2 KQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLVAAGASAARSARDAVQGADVVISMLPASQHVEGLYLDDDGL   81 (162)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTCEECSSHHHHHTSCSEEEECCSCHHHHHHHHHSTTCH
T ss_pred             CEEEEEEEHHHHHHHHHHHHHCCCeEEEEECchhhhhhhhhhhccccchhhhhccccCeeeecccchhhHHHHHhccccc
Confidence            479999999999999999999999999999999887766666665 4568889999999999875443322      123


Q ss_pred             HhccCCCeEEEeccCCC
Q psy4626         151 MDKMKNGCVVCNMGHSN  167 (542)
Q Consensus       151 l~~mk~GailvnvG~g~  167 (542)
                      +..+++|.++++++...
T Consensus        82 ~~~l~~g~iiid~st~~   98 (162)
T d3cuma2          82 LAHIAPGTLVLECSTIA   98 (162)
T ss_dssp             HHHSCTTCEEEECSCCC
T ss_pred             cccCCCCCEEEECCCCC
Confidence            55688999999998775

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=98.15  E-value=3.1e-07  Score=85.51  Aligned_cols=86  Identities=10%  Similarity=0.170  Sum_probs=69.5

Q ss_pred             hcCCcccc----ccccccHHHHhhcCCCC--CCCCCCCc---cccCCeeeeehhhhcccCcEEEE----ccCCCCccCHh
Q psy4626         261 LHLPTFDA----HLTELSDEQAKYMGLNK--AGPFKPSY---YSMDGFSVVKLNEVIRTVDIVVT----ATGNKNVVTRE  327 (542)
Q Consensus       261 l~L~~lg~----~i~~lt~~~a~~lg~~e--~~p~~a~e---a~mdG~~v~~~~~a~~~~d~~~t----~tg~~~vi~~~  327 (542)
                      +..+++|+    .|++..+++++++|+..  .||.+...   ....+....+++++++++|+|+.    +..|+++|+.+
T Consensus        45 l~g~tvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~~~~~~~~~~~l~~ll~~sD~v~l~~plt~~T~~li~~~  124 (191)
T d1gdha1          45 LDNKTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRASSSDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFFNKA  124 (191)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCCCHHHHHHHTCEECSSHHHHHHHCSEEEECCCCCTTTTTCBSHH
T ss_pred             ecccceEEeecccchHHHHHHHHhhccccccccccccccchhhcccccccCCHHHHHhhCCeEEecCCCCchHhheecHH
Confidence            34567776    99999999999999953  45654422   22344555678999999999998    56889999999


Q ss_pred             HHhcCCCCcEEEccCCCCc
Q psy4626         328 HMDKMKNGCVVCNMGHSNT  346 (542)
Q Consensus       328 ~~~~mk~gail~n~gh~~~  346 (542)
                      .|+.||+||+++|+||+.+
T Consensus       125 ~l~~mk~~a~lIN~sRG~i  143 (191)
T d1gdha1         125 TIKSLPQGAIVVNTARGDL  143 (191)
T ss_dssp             HHTTSCTTEEEEECSCGGG
T ss_pred             HhhCcCCccEEEecCCccc
Confidence            9999999999999999986

>d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.14  E-value=6.4e-06  Score=75.11  Aligned_cols=91  Identities=25%  Similarity=0.365  Sum_probs=74.3

Q ss_pred             HHHHHHHHHHhhcCccccCcEEEEEcCCh-hHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCCcEEE
Q psy4626          59 CRESIIDSLKRSTDVMFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVV  137 (542)
Q Consensus        59 ~~~s~~~ai~r~~~~~l~GktVvViG~G~-IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~aDvVi  137 (542)
                      |-.+++.-+.+ .+..+.||+|+|+|-+. +|+-+|..|...|++|++++...             .++.+.++++|++|
T Consensus        22 Tp~aii~lL~~-~~i~l~Gk~vvVIGrS~iVGrPLa~lL~~~gatVt~~~~~t-------------~~l~~~~~~aDivi   87 (170)
T d1a4ia1          22 TPKGCLELIKE-TGVPIAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKT-------------AHLDEEVNKGDILV   87 (170)
T ss_dssp             HHHHHHHHHHT-TTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC-------------SSHHHHHTTCSEEE
T ss_pred             hHHHHHHHHHH-hCcccccceEEEEecCCccchHHHHHHHhccCceEEEeccc-------------ccHHHHHhhccchh
Confidence            44555554444 46789999999999986 79999999999999999998432             34456678999999


Q ss_pred             EcCCCcccCCHHHHhccCCCeEEEeccCC
Q psy4626         138 TATGNKNVVTREHMDKMKNGCVVCNMGHS  166 (542)
Q Consensus       138 ~atG~~~lI~~e~l~~mk~GailvnvG~g  166 (542)
                      .++|.++++..+   .+|+|++++++|..
T Consensus        88 ~a~G~~~~i~~~---~vk~g~iviDvgi~  113 (170)
T d1a4ia1          88 VATGQPEMVKGE---WIKPGAIVIDCGIN  113 (170)
T ss_dssp             ECCCCTTCBCGG---GSCTTCEEEECCCB
T ss_pred             hccccccccccc---cccCCCeEeccCcc
Confidence            999999999853   57999999999954

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=98.14  E-value=3.3e-06  Score=76.23  Aligned_cols=104  Identities=22%  Similarity=0.277  Sum_probs=80.1

Q ss_pred             HHHHHHHHHhhcCccccCcEEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce-eeC-----HHHHh--
Q psy4626          60 RESIIDSLKRSTDVMFGGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVK-----LNEVI--  130 (542)
Q Consensus        60 ~~s~~~ai~r~~~~~l~GktVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~-v~~-----l~e~l--  130 (542)
                      +-..|+++.+... ..+|++|+|.|. |.+|..+++.++.+|++|++++.++.+...++..|++ +++     +.+.+  
T Consensus        13 ~~TA~~al~~~~~-l~~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~~~~~~lGa~~vi~~~~~d~~~~v~~   91 (179)
T d1qora2          13 GLTVYYLLRKTYE-IKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKAGAWQVINYREEDLVERLKE   91 (179)
T ss_dssp             HHHHHHHHHTTSC-CCTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHH
T ss_pred             HHHHHHHHHHHhC-CCCCCEEEEEccccccchHHHHHHHHhCCeEeecccchHHHHHHHhcCCeEEEECCCCCHHHHHHH
Confidence            3456777765533 457999999965 5599999999999999999999999988888888875 332     22222  


Q ss_pred             ----cCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCC
Q psy4626         131 ----RTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHS  166 (542)
Q Consensus       131 ----~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g  166 (542)
                          .+.|+|+++.|.. .+ ...+..+++++.++..|..
T Consensus        92 ~t~g~g~d~v~d~~g~~-~~-~~~~~~l~~~G~~v~~g~~  129 (179)
T d1qora2          92 ITGGKKVRVVYDSVGRD-TW-ERSLDCLQRRGLMVSFGNS  129 (179)
T ss_dssp             HTTTCCEEEEEECSCGG-GH-HHHHHTEEEEEEEEECCCT
T ss_pred             HhCCCCeEEEEeCccHH-HH-HHHHHHHhcCCeeeecccc
Confidence                4689999998754 44 4789999999999888764

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=98.13  E-value=6.9e-07  Score=82.65  Aligned_cols=84  Identities=15%  Similarity=0.178  Sum_probs=68.4

Q ss_pred             cCCcccc----ccccccHHHHhhcCCC--CCCCCCCCccccCCeeeeehhhhcccCcEEEE----ccCCCCccCHhHHhc
Q psy4626         262 HLPTFDA----HLTELSDEQAKYMGLN--KAGPFKPSYYSMDGFSVVKLNEVIRTVDIVVT----ATGNKNVVTREHMDK  331 (542)
Q Consensus       262 ~L~~lg~----~i~~lt~~~a~~lg~~--e~~p~~a~ea~mdG~~v~~~~~a~~~~d~~~t----~tg~~~vi~~~~~~~  331 (542)
                      ...++|+    .|++..+++++.+|+.  -.||....+. ...+.+.+++|+++++||++.    +.-|+++|+.+.|++
T Consensus        43 ~~~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~-~~~~~~~~l~ell~~sDii~i~~plt~~T~~li~~~~l~~  121 (188)
T d1sc6a1          43 RGKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLPL-GNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISL  121 (188)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCCC-TTCEECSCHHHHHHHCSEEEECCCSSTTTTTCBCHHHHHH
T ss_pred             cceEEEEeecccchhhhhhhcccccceEeeccccccchh-hhhhhhhhHHHHHhhccceeecccCCcchhhhccHHHHhh
Confidence            3455555    8899999999999994  3345444332 455667789999999999999    667789999999999


Q ss_pred             CCCCcEEEccCCCCc
Q psy4626         332 MKNGCVVCNMGHSNT  346 (542)
Q Consensus       332 mk~gail~n~gh~~~  346 (542)
                      ||+|++|+|++|+++
T Consensus       122 mk~~a~lIN~aRG~l  136 (188)
T d1sc6a1         122 MKPGSLLINASRGTV  136 (188)
T ss_dssp             SCTTEEEEECSCSSS
T ss_pred             CCCCCEEEEcCcHHh
Confidence            999999999999987

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=98.12  E-value=4e-06  Score=75.30  Aligned_cols=87  Identities=13%  Similarity=0.138  Sum_probs=64.9

Q ss_pred             cEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce----------------eeCHHHHhcCCcEEEEcCC
Q psy4626          78 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS----------------VVKLNEVIRTVDIVVTATG  141 (542)
Q Consensus        78 ktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~----------------v~~l~e~l~~aDvVi~atG  141 (542)
                      |++.|+|+|.+|..+|..|...|.+|.++|+++.+.......+..                ..++.++++++|+||.++.
T Consensus         2 k~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aD~iii~v~   81 (184)
T d1bg6a2           2 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILIVVP   81 (184)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEEECSC
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHhcCCCEEEEEEc
Confidence            799999999999999999999999999999998876544333211                2346788999999999876


Q ss_pred             CcccCC--HHHHhccCCCeEEEecc
Q psy4626         142 NKNVVT--REHMDKMKNGCVVCNMG  164 (542)
Q Consensus       142 ~~~lI~--~e~l~~mk~GailvnvG  164 (542)
                      +...-.  .+.-..++++.+++...
T Consensus        82 ~~~~~~~~~~i~~~l~~~~~iv~~~  106 (184)
T d1bg6a2          82 AIHHASIAANIASYISEGQLIILNP  106 (184)
T ss_dssp             GGGHHHHHHHHGGGCCTTCEEEESS
T ss_pred             hhHHHHHHHHhhhccCCCCEEEEeC
Confidence            442211  23345678888877543

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.12  E-value=3.2e-06  Score=77.41  Aligned_cols=110  Identities=15%  Similarity=0.137  Sum_probs=83.5

Q ss_pred             ccccCcEEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCcee-eCH----HHHh-----cCCcEEEEcCC
Q psy4626          73 VMFGGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV-VKL----NEVI-----RTVDIVVTATG  141 (542)
Q Consensus        73 ~~l~GktVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v-~~l----~e~l-----~~aDvVi~atG  141 (542)
                      ...+|++|+|.|. |-+|....|.++.+|++|+++..++.+...+...|.+. ++.    ++..     ++.|+|+++.|
T Consensus        28 ~~~~g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k~~~~~~lGa~~vi~~~~~~~~~~~~~~~~gvD~vid~vg  107 (176)
T d1xa0a2          28 LTPERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRVLGAKEVLAREDVMAERIRPLDKQRWAAAVDPVG  107 (176)
T ss_dssp             CCGGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHHTTCSEEEECC---------CCSCCEEEEEECST
T ss_pred             CCCCCCEEEEEeccchHHHHHHHHHHHcCCceEEecCchHHHHHHHhcccceeeecchhHHHHHHHhhccCcCEEEEcCC
Confidence            4567999999995 99999999999999999999998888888888888763 221    1221     57999999988


Q ss_pred             CcccCCHHHHhccCCCeEEEeccCC---CcccChHhhcCCCcceee
Q psy4626         142 NKNVVTREHMDKMKNGCVVCNMGHS---NTEIDVNSLRTPDLTWEK  184 (542)
Q Consensus       142 ~~~lI~~e~l~~mk~GailvnvG~g---~~eid~~aL~~~~l~v~~  184 (542)
                      .. .+ .+.++.|+++++++.+|..   ..++++..+..+.+++.+
T Consensus       108 g~-~~-~~~l~~l~~~Griv~~G~~~g~~~~~~~~~~~~k~~~i~G  151 (176)
T d1xa0a2         108 GR-TL-ATVLSRMRYGGAVAVSGLTGGAEVPTTVHPFILRGVSLLG  151 (176)
T ss_dssp             TT-TH-HHHHHTEEEEEEEEECSCCSSSCCCCCSHHHHHTTCEEEE
T ss_pred             ch-hH-HHHHHHhCCCceEEEeecccCcccCCCHHHHHHCCcEEEE
Confidence            64 34 4789999999999998864   245666655544444443

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.10  E-value=1.5e-06  Score=73.51  Aligned_cols=91  Identities=15%  Similarity=0.286  Sum_probs=69.1

Q ss_pred             ccccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhh--hhcCCceeeC--H-HHHhcCCcEEEEcCCCcccCC
Q psy4626          73 VMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQ--ACMDGFSVVK--L-NEVIRTVDIVVTATGNKNVVT  147 (542)
Q Consensus        73 ~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~--A~~~G~~v~~--l-~e~l~~aDvVi~atG~~~lI~  147 (542)
                      ..+.|++|+|+|.|.+|..-|+.|...|++|++++..+.....  +...+.....  . ++-+.++++|+.+++.+. ++
T Consensus         8 l~l~~k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~dl~~~~lv~~at~d~~-~n   86 (113)
T d1pjqa1           8 CQLRDRDCLIVGGGDVAERKARLLLEAGARLTVNALTFIPQFTVWANEGMLTLVEGPFDETLLDSCWLAIAATDDDT-VN   86 (113)
T ss_dssp             ECCBTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSCCHHHHHHHTTTSCEEEESSCCGGGGTTCSEEEECCSCHH-HH
T ss_pred             EEeCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCChHHHHHHhcCCceeeccCCCHHHhCCCcEEeecCCCHH-HH
Confidence            3578999999999999999999999999999999876654332  2222333221  1 344688999999987754 56


Q ss_pred             HHHHhccCCCeEEEecc
Q psy4626         148 REHMDKMKNGCVVCNMG  164 (542)
Q Consensus       148 ~e~l~~mk~GailvnvG  164 (542)
                      .+....+|+.++++|+.
T Consensus        87 ~~i~~~a~~~~ilVNv~  103 (113)
T d1pjqa1          87 QRVSDAAESRRIFCNVV  103 (113)
T ss_dssp             HHHHHHHHHTTCEEEET
T ss_pred             HHHHHHHHHcCCEEEeC
Confidence            67778889999999977

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.04  E-value=4.4e-06  Score=74.29  Aligned_cols=86  Identities=12%  Similarity=0.156  Sum_probs=71.1

Q ss_pred             EEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhh-hcCCcee-eCHHHHhcCCcEEEEcCCCcccCCHHHHhccCC
Q psy4626          79 QVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQA-CMDGFSV-VKLNEVIRTVDIVVTATGNKNVVTREHMDKMKN  156 (542)
Q Consensus        79 tVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A-~~~G~~v-~~l~e~l~~aDvVi~atG~~~lI~~e~l~~mk~  156 (542)
                      +++|+|+|.+|..++..+...|-+|+++++++.+..+. ...|..+ .+.+++++.+|+||.|.- +..+ .+.++.+++
T Consensus         2 kIg~IG~G~mG~al~~~l~~~~~~i~v~~r~~~~~~~l~~~~g~~~~~~~~~~~~~~dvIilavk-p~~~-~~vl~~l~~   79 (152)
T d2ahra2           2 KIGIIGVGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQLALPYAMSHQDLIDQVDLVILGIK-PQLF-ETVLKPLHF   79 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHTTSSCEEEEECSSHHHHHHHHHHHTCCBCSSHHHHHHTCSEEEECSC-GGGH-HHHHTTSCC
T ss_pred             EEEEEeccHHHHHHHHHHHhCCCeEEEEcChHHhHHhhccccceeeechhhhhhhccceeeeecc-hHhH-HHHhhhccc
Confidence            68999999999999999999999999999998876543 4456654 467888999999999973 4455 478899999


Q ss_pred             CeEEEeccCC
Q psy4626         157 GCVVCNMGHS  166 (542)
Q Consensus       157 GailvnvG~g  166 (542)
                      +..++++..+
T Consensus        80 ~~~iis~~ag   89 (152)
T d2ahra2          80 KQPIISMAAG   89 (152)
T ss_dssp             CSCEEECCTT
T ss_pred             ceeEeccccc
Confidence            9999988765

>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Leucine dehydrogenase
species: Bacillus sphaericus [TaxId: 1421]

Probab=98.00  E-value=1.4e-05  Score=76.17  Aligned_cols=85  Identities=22%  Similarity=0.331  Sum_probs=70.1

Q ss_pred             CccccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhh-cCCceeeCHHHHh-cCCcEEEEcCCCcccCCHH
Q psy4626          72 DVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQAC-MDGFSVVKLNEVI-RTVDIVVTATGNKNVVTRE  149 (542)
Q Consensus        72 ~~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~-~~G~~v~~l~e~l-~~aDvVi~atG~~~lI~~e  149 (542)
                      +..+.|++|+|-|+|.+|..+|+.|...|++|+++|.++.+...+. ..|....+.++.+ ..|||++-|.- .+.|+.+
T Consensus        34 ~~~l~g~~v~IqG~GnVG~~~a~~L~~~Gakvv~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~cDIl~PcA~-~~~I~~~  112 (230)
T d1leha1          34 SDSLEGLAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAVSAAVAEEGADAVAPNAIYGVTCDIFAPCAL-GAVLNDF  112 (230)
T ss_dssp             SCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCCEECCGGGTTTCCCSEEEECSC-SCCBSTT
T ss_pred             CCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEeecccHHHHHHHHHhcCCcccCCcccccccccEeccccc-ccccChH
Confidence            3568999999999999999999999999999999999987665433 3577778888776 58999999863 4588888


Q ss_pred             HHhccCCC
Q psy4626         150 HMDKMKNG  157 (542)
Q Consensus       150 ~l~~mk~G  157 (542)
                      ....++-.
T Consensus       113 ~~~~l~ak  120 (230)
T d1leha1         113 TIPQLKAK  120 (230)
T ss_dssp             HHHHCCCS
T ss_pred             HhhccCcc
Confidence            88888643

>d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class I ketol-acid reductoisomerase (KARI)
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.98  E-value=4.6e-06  Score=76.09  Aligned_cols=91  Identities=21%  Similarity=0.337  Sum_probs=73.2

Q ss_pred             cccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchh-hhhhhcCCceeeCHHHHhcCCcEEEEcCCC---cccCCHH
Q psy4626          74 MFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPIC-ALQACMDGFSVVKLNEVIRTVDIVVTATGN---KNVVTRE  149 (542)
Q Consensus        74 ~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r-~~~A~~~G~~v~~l~e~l~~aDvVi~atG~---~~lI~~e  149 (542)
                      .+.+|+|+|+|||.-|..-|+.||..|.+|+|-=+...+ ...|..+||++.+++|+.+.+|+|...+..   +.+...+
T Consensus        13 ~ik~k~IaViGYGsQG~AhAlNLrDSG~~V~VGLr~gs~s~~~A~~~Gf~v~~~~eA~~~aDiim~L~PD~~q~~vy~~~   92 (182)
T d1np3a2          13 IIQGKKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSGSATVAKAEAHGLKVADVKTAVAAADVVMILTPDEFQGRLYKEE   92 (182)
T ss_dssp             HHHTSCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHTTCEEECHHHHHHTCSEEEECSCHHHHHHHHHHH
T ss_pred             HHCCCEEEEEeeCcHhHHHHhhhhhcCCCEEEEcCCCCccHHHHhhhccccccHHHHhhhcCeeeeecchHHHHHHHHHh
Confidence            467999999999999999999999999999996543333 356888999999999999999999996542   2334334


Q ss_pred             HHhccCCCeEEEecc
Q psy4626         150 HMDKMKNGCVVCNMG  164 (542)
Q Consensus       150 ~l~~mk~GailvnvG  164 (542)
                      ....||+|..+...-
T Consensus        93 I~p~lk~g~~L~FaH  107 (182)
T d1np3a2          93 IEPNLKKGATLAFAH  107 (182)
T ss_dssp             TGGGCCTTCEEEESC
T ss_pred             hhhhcCCCcEEEEec
Confidence            567899999988643

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=97.98  E-value=1.4e-06  Score=80.51  Aligned_cols=91  Identities=8%  Similarity=0.101  Sum_probs=69.1

Q ss_pred             cCCcccc----ccccccHHHHhhcCCC--CCCCCCCCcc---ccCCeeeeehhhhcccCcEEEE----ccCCCCccCHhH
Q psy4626         262 HLPTFDA----HLTELSDEQAKYMGLN--KAGPFKPSYY---SMDGFSVVKLNEVIRTVDIVVT----ATGNKNVVTREH  328 (542)
Q Consensus       262 ~L~~lg~----~i~~lt~~~a~~lg~~--e~~p~~a~ea---~mdG~~v~~~~~a~~~~d~~~t----~tg~~~vi~~~~  328 (542)
                      ...++|+    .|++...++++++|+.  -.||.+.-+.   ........+++|+++++|+|+.    +.-|+++|+.+.
T Consensus        43 ~~~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~~~~~~~~~~~l~~~l~~sD~v~~~~plt~~T~~li~~~~  122 (188)
T d2naca1          43 EAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDET  122 (188)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCCHHHHHHHTCEECSSHHHHGGGCSEEEECSCCCTTTTTCBSHHH
T ss_pred             cccceeeccccccchhhhhhhhccCceEEEEeeccccccccccccccccCCHHHHHHhccchhhcccccccchhhhHHHH
Confidence            4455665    7899999999999994  2344433222   1234555678999999999998    667889999999


Q ss_pred             HhcCCCCcEEEccCCCCcccccccc
Q psy4626         329 MDKMKNGCVVCNMGHSNTEIDVNSL  353 (542)
Q Consensus       329 ~~~mk~gail~n~gh~~~Ei~~~~l  353 (542)
                      |+.||+|++++|+||+++ ||-++|
T Consensus       123 l~~mk~ga~lIN~aRG~i-vd~~aL  146 (188)
T d2naca1         123 LKLFKRGAYIVNTARGKL-CDRDAV  146 (188)
T ss_dssp             HTTSCTTEEEEECSCGGG-BCHHHH
T ss_pred             HHhCCCCCEEEecCchhh-hhHHHH
Confidence            999999999999999987 343333

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=97.95  E-value=6.6e-06  Score=70.78  Aligned_cols=65  Identities=23%  Similarity=0.316  Sum_probs=53.7

Q ss_pred             cEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeC--------HHHH-hcCCcEEEEcCCC
Q psy4626          78 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVK--------LNEV-IRTVDIVVTATGN  142 (542)
Q Consensus        78 ktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~--------l~e~-l~~aDvVi~atG~  142 (542)
                      |+++|+|+|.+|+.+|+.|...|.+|+++|.||.+..++...|..+.-        ++++ +..+|.+|.+++.
T Consensus         1 k~~iIiG~G~~G~~la~~L~~~g~~vvvid~d~~~~~~~~~~~~~~~~gd~~~~~~l~~a~i~~a~~vi~~~~~   74 (134)
T d2hmva1           1 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYASYATHAVIANATEENELLSLGIRNFEYVIVAIGA   74 (134)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHHTTTTCSEEEECCTTCTTHHHHHTGGGCSEEEECCCS
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEecCcHHHHHHHHHhCCcceeeecccchhhhccCCccccEEEEEcCc
Confidence            578999999999999999999999999999999998888777766431        2333 5789988887764

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=97.89  E-value=1.4e-05  Score=73.24  Aligned_cols=118  Identities=19%  Similarity=0.104  Sum_probs=79.7

Q ss_pred             HHHHHHHhhcCccccCcEEEEE--cCChhHHHHHHHHHhCCCEEEEEeCCchh----hhhhhcCCce-eeCHH-------
Q psy4626          62 SIIDSLKRSTDVMFGGKQVVLC--GYGEVGKGCCQSLKGLGCVIYITEIDPIC----ALQACMDGFS-VVKLN-------  127 (542)
Q Consensus        62 s~~~ai~r~~~~~l~GktVvVi--G~G~IG~~vA~~l~~~Ga~Viv~d~dp~r----~~~A~~~G~~-v~~l~-------  127 (542)
                      ..|+++.+.. ...+|.+|+|+  |.|.+|+.+.+.+|.+|++|+++-.++..    ...+...|++ +++.+       
T Consensus        15 TA~~~l~~~~-~~~~g~~vli~~ga~g~vG~~aiqlAk~~Ga~vI~~v~~~~~~~~~~~~~~~lGad~vi~~~~~~~~~~   93 (189)
T d1gu7a2          15 TAYLMLTHYV-KLTPGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELGATQVITEDQNNSREF   93 (189)
T ss_dssp             HHHHHHHSSS-CCCTTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHHHHHHHHHHHTCSEEEEHHHHHCGGG
T ss_pred             HHHHHHHHHh-CCCCCCEEEEEeCCCchHHHHHHHHHhhcCCeEEEEEecccccchHHhhhhhccccEEEeccccchhHH
Confidence            3455655443 34578999998  67999999999999999999987544432    2234556765 33321       


Q ss_pred             -----HHh----cCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCC---CcccChHhhcCCCcce
Q psy4626         128 -----EVI----RTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHS---NTEIDVNSLRTPDLTW  182 (542)
Q Consensus       128 -----e~l----~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g---~~eid~~aL~~~~l~v  182 (542)
                           +..    .++|+++++.|.+. . .+.++.|++++.++.+|..   +.+++...+..+.+++
T Consensus        94 ~~~v~~~~~~~g~~vdvv~D~vg~~~-~-~~~~~~l~~~G~~v~~G~~~~~~~~~~~~~l~~k~~~i  158 (189)
T d1gu7a2          94 GPTIKEWIKQSGGEAKLALNCVGGKS-S-TGIARKLNNNGLMLTYGGMSFQPVTIPTSLYIFKNFTS  158 (189)
T ss_dssp             HHHHHHHHHHHTCCEEEEEESSCHHH-H-HHHHHTSCTTCEEEECCCCSSCCEEECHHHHHHSCCEE
T ss_pred             HHHHHHHHhhccCCceEEEECCCcch-h-hhhhhhhcCCcEEEEECCccCCCccCcHHHHHHCCcEE
Confidence                 111    35899999998653 3 4689999999999999853   2456666554444433

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.87  E-value=1.5e-05  Score=72.89  Aligned_cols=103  Identities=18%  Similarity=0.249  Sum_probs=72.4

Q ss_pred             HHHHHHHHHhhcCccccC--cEEEEEc-CChhHHHHHHHHHhCCCE-EEEEeCCchhhh-hhhcCCcee-eC-----HHH
Q psy4626          60 RESIIDSLKRSTDVMFGG--KQVVLCG-YGEVGKGCCQSLKGLGCV-IYITEIDPICAL-QACMDGFSV-VK-----LNE  128 (542)
Q Consensus        60 ~~s~~~ai~r~~~~~l~G--ktVvViG-~G~IG~~vA~~l~~~Ga~-Viv~d~dp~r~~-~A~~~G~~v-~~-----l~e  128 (542)
                      +...|+++...... .+|  ++|+|.| .|.||+.+++.++.+|++ |+++..++.+.. .+...|++. ++     ..+
T Consensus        13 glTA~~~l~~~~~~-~~G~~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~~~gad~vi~~~~~~~~~   91 (187)
T d1vj1a2          13 GLTSLIGVQEKGHI-SAGSNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSELGFDAAVNYKTGNVAE   91 (187)
T ss_dssp             HHHHHHHHHHHSCC-CTTSCCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHHHSCCSEEEETTSSCHHH
T ss_pred             HHHHHHHHHHHhCC-CCCCCCEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhhcccceEEeeccchhHHH
Confidence            45567776655332 344  8999999 499999999999999994 555665555544 344567753 22     222


Q ss_pred             Hh-----cCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccC
Q psy4626         129 VI-----RTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGH  165 (542)
Q Consensus       129 ~l-----~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~  165 (542)
                      .+     +++|+|+++.|.. .+ ...++.++++++++.+|.
T Consensus        92 ~~~~~~~~GvDvv~D~vGg~-~~-~~~~~~l~~~G~iv~~G~  131 (187)
T d1vj1a2          92 QLREACPGGVDVYFDNVGGD-IS-NTVISQMNENSHIILCGQ  131 (187)
T ss_dssp             HHHHHCTTCEEEEEESSCHH-HH-HHHHTTEEEEEEEEEC--
T ss_pred             HHHHHhccCceEEEecCCch-hH-HHHhhhccccccEEEecc
Confidence            22     4799999999864 34 478999999999999985

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.84  E-value=6e-05  Score=68.95  Aligned_cols=99  Identities=16%  Similarity=0.126  Sum_probs=69.4

Q ss_pred             HHHHHHhhcCccccCcEEEEEc-CChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhc-----CC--c---eeeC---HHH
Q psy4626          63 IIDSLKRSTDVMFGGKQVVLCG-YGEVGKGCCQSLKGLGCVIYITEIDPICALQACM-----DG--F---SVVK---LNE  128 (542)
Q Consensus        63 ~~~ai~r~~~~~l~GktVvViG-~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~-----~G--~---~v~~---l~e  128 (542)
                      .+.-+.+..+..+.||+++|+| .|-||+.+|+.|...|++|+++++++.+..+...     ..  +   ++.+   +++
T Consensus         9 ~v~~~~~~~~~~l~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~   88 (191)
T d1luaa1           9 GVALVVKAAGGSVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKRFKVNVTAAETADDASRAE   88 (191)
T ss_dssp             HHHHHHHHTTSCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHTCCCEEEECCSHHHHHH
T ss_pred             HHHHHHHHcCCCCCCCEEEEECCCHHHHHHHHHHHHhhccchhhcccchHHHHHHHHHHHhccchhhhhhhcccHHHHHH
Confidence            3444555566789999999999 4899999999999999999999999877543221     11  1   1122   345


Q ss_pred             HhcCCcEEEEcCCC-cccCCHHHHhccCCCeEEE
Q psy4626         129 VIRTVDIVVTATGN-KNVVTREHMDKMKNGCVVC  161 (542)
Q Consensus       129 ~l~~aDvVi~atG~-~~lI~~e~l~~mk~Gailv  161 (542)
                      ++.++|++|.++|. ...++.+.++.+..--++.
T Consensus        89 ~~~~iDilin~Ag~g~~~~~~e~~~~~~~~nv~~  122 (191)
T d1luaa1          89 AVKGAHFVFTAGAIGLELLPQAAWQNESSIEIVA  122 (191)
T ss_dssp             HTTTCSEEEECCCTTCCCBCHHHHHTCTTCCEEE
T ss_pred             HhcCcCeeeecCccccccCCHHHHHhhhcceeeh
Confidence            67899999998763 3445666776665544433

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=97.83  E-value=1.3e-05  Score=72.53  Aligned_cols=91  Identities=10%  Similarity=0.124  Sum_probs=67.7

Q ss_pred             CcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce------ee---CHHHHhcCCcEEEEcCCCcccC-
Q psy4626          77 GKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS------VV---KLNEVIRTVDIVVTATGNKNVV-  146 (542)
Q Consensus        77 GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~------v~---~l~e~l~~aDvVi~atG~~~lI-  146 (542)
                      -++|+|||.|.+|..+|+.|...|.+|++||++|.+.......+..      ..   ++.+.+..+|+++.+.-....+ 
T Consensus         2 ~~nIg~IGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ii~~~~~~~~v~   81 (176)
T d2pgda2           2 QADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVLGAHSLEEMVSKLKKPRRIILLVKAGQAVD   81 (176)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHHBCSSCEEEECSCTTHHHH
T ss_pred             CCcEEEEeEhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHhccccccccchhhhhhhhhhhcccceEEEecCchHHHH
Confidence            3579999999999999999999999999999999887654443321      12   2345668899998865332211 


Q ss_pred             --CHHHHhccCCCeEEEeccCCC
Q psy4626         147 --TREHMDKMKNGCVVCNMGHSN  167 (542)
Q Consensus       147 --~~e~l~~mk~GailvnvG~g~  167 (542)
                        ....+..+++|.++++++..+
T Consensus        82 ~v~~~l~~~~~~g~iiid~sT~~  104 (176)
T d2pgda2          82 NFIEKLVPLLDIGDIIIDGGNSE  104 (176)
T ss_dssp             HHHHHHHHHCCTTCEEEECSCCC
T ss_pred             HHHHHHHhccccCcEEEecCcch
Confidence              135677889999999998765

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.82  E-value=1.9e-05  Score=70.41  Aligned_cols=89  Identities=19%  Similarity=0.274  Sum_probs=68.3

Q ss_pred             cEEEEEcCChhHHHHHHHHHhCCC--EEEEEeCCchhhhhhhcCCce--e-eCHHH-HhcCCcEEEEcCCCc---ccCCH
Q psy4626          78 KQVVLCGYGEVGKGCCQSLKGLGC--VIYITEIDPICALQACMDGFS--V-VKLNE-VIRTVDIVVTATGNK---NVVTR  148 (542)
Q Consensus        78 ktVvViG~G~IG~~vA~~l~~~Ga--~Viv~d~dp~r~~~A~~~G~~--v-~~l~e-~l~~aDvVi~atG~~---~lI~~  148 (542)
                      ++++|+|+|.||..+|+.|+..|.  +|+++|+++.....+...|.-  . .+.++ ....+|+|+.|+-..   .++ .
T Consensus         2 k~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~dlIila~p~~~~~~vl-~   80 (171)
T d2g5ca2           2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSSPVRTFREIA-K   80 (171)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCGGGGGGTCCSEEEECSCHHHHHHHH-H
T ss_pred             CEEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhcchhhhhhhhhhhccccccccccCCchhhhhhh-h
Confidence            479999999999999999999885  899999999888878777752  2 23333 335899999997532   233 2


Q ss_pred             HHHhccCCCeEEEeccCCC
Q psy4626         149 EHMDKMKNGCVVCNMGHSN  167 (542)
Q Consensus       149 e~l~~mk~GailvnvG~g~  167 (542)
                      +....++++.+++.++...
T Consensus        81 ~l~~~~~~~~ii~d~~s~k   99 (171)
T d2g5ca2          81 KLSYILSEDATVTDQGSVK   99 (171)
T ss_dssp             HHHHHSCTTCEEEECCSCC
T ss_pred             hhhcccccccccccccccc
Confidence            4556789999999999764

>d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.82  E-value=2.4e-05  Score=71.25  Aligned_cols=92  Identities=20%  Similarity=0.300  Sum_probs=67.2

Q ss_pred             ccccCcEEEEEcCCh-hHHHHHHHHHhCCCEEEEEeCCchhhhh--h-h---cCCce---ee---CHHHHhcCCcEEEEc
Q psy4626          73 VMFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQ--A-C---MDGFS---VV---KLNEVIRTVDIVVTA  139 (542)
Q Consensus        73 ~~l~GktVvViG~G~-IG~~vA~~l~~~Ga~Viv~d~dp~r~~~--A-~---~~G~~---v~---~l~e~l~~aDvVi~a  139 (542)
                      ..+.||+|+|+|-+. +|+-+|..|...|++|+.++.+-.....  + .   ..+..   ..   .+.+.+..+|++|.+
T Consensus        25 ~~l~GK~vvVIGrS~iVG~Pla~lL~~~gaTVt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~aDIvIsa  104 (171)
T d1edza1          25 NRLYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQKFTRGESLKLNKHHVEDLGEYSEDLLKKCSLDSDVVITG  104 (171)
T ss_dssp             CTTTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEEEEESCCCSSCCCCEEEEEEECCHHHHHHHHHHCSEEEEC
T ss_pred             CCCCCCEEEEECCccccHHHHHHHHHHCCCEEEEeccccccccccccceeeeeeccccccccchhHHhhccccCCEEEEc
Confidence            478999999999876 5999999999999999999865422110  0 0   00000   01   144556789999999


Q ss_pred             CCCccc-CCHHHHhccCCCeEEEeccCCC
Q psy4626         140 TGNKNV-VTREHMDKMKNGCVVCNMGHSN  167 (542)
Q Consensus       140 tG~~~l-I~~e~l~~mk~GailvnvG~g~  167 (542)
                      +|.++. ++.   +.+|+|++++++|...
T Consensus       105 vG~p~~~i~~---d~ik~GavvIDvGi~~  130 (171)
T d1edza1         105 VPSENYKFPT---EYIKEGAVCINFACTK  130 (171)
T ss_dssp             CCCTTCCBCT---TTSCTTEEEEECSSSC
T ss_pred             cCCCccccCh---hhcccCceEeeccccc
Confidence            999886 764   4579999999999764

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=97.79  E-value=4.1e-05  Score=68.90  Aligned_cols=104  Identities=18%  Similarity=0.294  Sum_probs=68.9

Q ss_pred             HHHHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhc----C-CceeeCHHHH-hcCCcE
Q psy4626          62 SIIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACM----D-GFSVVKLNEV-IRTVDI  135 (542)
Q Consensus        62 s~~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~----~-G~~v~~l~e~-l~~aDv  135 (542)
                      ++++++++. +..+.||+|+|+|+|-.+++++..|...|++|+++.+++.++..-..    . .....+.++. ...+|+
T Consensus         4 Gf~~~l~~~-~~~~~~k~vlIlGaGGaarai~~al~~~g~~i~I~nRt~~ka~~l~~~~~~~~~~~~~~~~~~~~~~~dl   82 (170)
T d1nyta1           4 GLLSDLERL-SFIRPGLRILLIGAGGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHTGSIQALSMDELEGHEFDL   82 (170)
T ss_dssp             HHHHHHHHH-TCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHTGGGSSEEECCSGGGTTCCCSE
T ss_pred             HHHHHHHHc-CCCCCCCEEEEECCcHHHHHHHHHhcccceEEEeccchHHHHHHHHHHHhhcccccccccccccccccce
Confidence            455566544 56789999999999999999999999999999999999987643211    1 1233444433 367999


Q ss_pred             EEEcCCC--cccCCHHHHhccCCCeEEEeccCC
Q psy4626         136 VVTATGN--KNVVTREHMDKMKNGCVVCNMGHS  166 (542)
Q Consensus       136 Vi~atG~--~~lI~~e~l~~mk~GailvnvG~g  166 (542)
                      ||.||..  .+-.....++.++++.++..+-..
T Consensus        83 iIN~Tp~G~~~~~~~~~~~~~~~~~~v~D~vY~  115 (170)
T d1nyta1          83 IINATSSGISGDIPAIPSSLIHPGIYCYDMFYQ  115 (170)
T ss_dssp             EEECCSCGGGTCCCCCCGGGCCTTCEEEESCCC
T ss_pred             eecccccCcccCCCCCcHHHhccCcEEEEeecC
Confidence            9998731  111111123446666666655433

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=97.79  E-value=2.4e-05  Score=63.69  Aligned_cols=69  Identities=20%  Similarity=0.309  Sum_probs=51.0

Q ss_pred             cccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhh--hhhhcCCcee--eCH-HHHhcCCcEEEEcCCCc
Q psy4626          74 MFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICA--LQACMDGFSV--VKL-NEVIRTVDIVVTATGNK  143 (542)
Q Consensus        74 ~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~--~~A~~~G~~v--~~l-~e~l~~aDvVi~atG~~  143 (542)
                      .+.||+|+|+|+|..|+.+|+.|...|++|+++|.++...  .+.. .+..+  ... ++.+.+.|+||..+|-+
T Consensus         2 ~~~~K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~d~vi~SPGi~   75 (93)
T d2jfga1           2 DYQGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPGLDKLP-EAVERHTGSLNDEWLMAADLIVASPGIA   75 (93)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHHHTTCCCEEEESSSSCTTGGGSC-TTSCEEESBCCHHHHHHCSEEEECTTSC
T ss_pred             CcCCCEEEEEeECHHHHHHHHHHHHCCCEEEEeeCCcCchhHHHHh-hccceeecccchhhhccCCEEEECCCCC
Confidence            3679999999999999999999999999999999855422  1222 22221  122 44567899999998854

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.75  E-value=3.3e-05  Score=71.29  Aligned_cols=87  Identities=16%  Similarity=0.216  Sum_probs=60.5

Q ss_pred             cEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhh-----------cCCc-------------------eeeCHH
Q psy4626          78 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQAC-----------MDGF-------------------SVVKLN  127 (542)
Q Consensus        78 ktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~-----------~~G~-------------------~v~~l~  127 (542)
                      ++|+|+|+|.+|.++|..+...|.+|+++|+++..+..+.           ..+.                   ...++.
T Consensus         5 kkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~d~~   84 (192)
T d1f0ya2           5 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATSTDAA   84 (192)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEESCHH
T ss_pred             EEEEEECcCHHHHHHHHHHHhCCCcEEEEECChHHHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHHHHhhccccchhH
Confidence            6899999999999999999999999999999986433221           1111                   122455


Q ss_pred             HHhcCCcEEEEcCCC-----cccCCHHHHhccCCCeEEEeccC
Q psy4626         128 EVIRTVDIVVTATGN-----KNVVTREHMDKMKNGCVVCNMGH  165 (542)
Q Consensus       128 e~l~~aDvVi~atG~-----~~lI~~e~l~~mk~GailvnvG~  165 (542)
                      +++.++|+|++|.--     ..++ ++.=+.+++.+++.+..+
T Consensus        85 ~a~~~ad~ViEav~E~l~~K~~v~-~~l~~~~~~~~ilasnTS  126 (192)
T d1f0ya2          85 SVVHSTDLVVEAIVENLKVKNELF-KRLDKFAAEHTIFASNTS  126 (192)
T ss_dssp             HHTTSCSEEEECCCSCHHHHHHHH-HHHTTTSCTTCEEEECCS
T ss_pred             hhhcccceehhhcccchhHHHHHH-HHHhhhcccCceeeccCc
Confidence            678899999998632     1222 122234688888884443

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=97.75  E-value=2.1e-05  Score=71.84  Aligned_cols=92  Identities=22%  Similarity=0.234  Sum_probs=72.4

Q ss_pred             ccccCcEEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce-eeCHHH-----Hh--cCCcEEEEcCCCc
Q psy4626          73 VMFGGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVKLNE-----VI--RTVDIVVTATGNK  143 (542)
Q Consensus        73 ~~l~GktVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~-v~~l~e-----~l--~~aDvVi~atG~~  143 (542)
                      ....+.+|+|.|. |.+|....|.+|.+|++|+++..++.+...+...|++ +++.++     .+  ...|.++++.|..
T Consensus        28 ~~~~~~~vlV~gasGGVG~~aiQlAk~~Ga~Via~~~~~~k~~~~~~lGad~vi~~~~~~~~~~l~~~~~~~vvD~Vgg~  107 (177)
T d1o89a2          28 VRPQDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEYLKSLGASRVLPRDEFAESRPLEKQVWAGAIDTVGDK  107 (177)
T ss_dssp             CCGGGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHHHTEEEEEEGGGSSSCCSSCCCCEEEEEESSCHH
T ss_pred             CCCCCCcEEEEEccccchHHHHHHHHHcCCCeEEEecchhHHHHHHhhccccccccccHHHHHHHHhhcCCeeEEEcchH
Confidence            3445567887776 9999999999999999999999999888778888886 344322     12  3469999998864


Q ss_pred             ccCCHHHHhccCCCeEEEeccCC
Q psy4626         144 NVVTREHMDKMKNGCVVCNMGHS  166 (542)
Q Consensus       144 ~lI~~e~l~~mk~GailvnvG~g  166 (542)
                       .+ .+.++.++++++++++|..
T Consensus       108 -~~-~~~l~~l~~~Griv~~G~~  128 (177)
T d1o89a2         108 -VL-AKVLAQMNYGGCVAACGLA  128 (177)
T ss_dssp             -HH-HHHHHTEEEEEEEEECCCT
T ss_pred             -HH-HHHHHHhccccceEeeccc
Confidence             34 4789999999999999865

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.69  E-value=2.4e-05  Score=69.02  Aligned_cols=86  Identities=12%  Similarity=0.134  Sum_probs=61.3

Q ss_pred             EEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce-eeCHHHHhcCCcEEEEcCCCcccCCHHHHhcc--C
Q psy4626          79 QVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVKLNEVIRTVDIVVTATGNKNVVTREHMDKM--K  155 (542)
Q Consensus        79 tVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~-v~~l~e~l~~aDvVi~atG~~~lI~~e~l~~m--k  155 (542)
                      +|+|||+|.+|..+|+.|+..|.+|+++++++.+.......++. ..+.+++++.+|+||.|.-......  .+..+  .
T Consensus         2 kIgiIG~G~mG~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~diIi~~v~~~~~~~--~~~~~~~~   79 (152)
T d1i36a2           2 RVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERARTVGVTETSEEDVYSCPVVISAVTPGVALG--AARRAGRH   79 (152)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTCEECCHHHHHTSSEEEECSCGGGHHH--HHHHHHTT
T ss_pred             EEEEEcHHHHHHHHHHHHHHCCCeEEEEcCchhHHHHHhhhcccccccHHHHHhhcCeEEEEecCchHHH--HHHhhccc
Confidence            69999999999999999999999999999887665444333433 3467888999999999875433332  22111  2


Q ss_pred             CCeEEEeccCC
Q psy4626         156 NGCVVCNMGHS  166 (542)
Q Consensus       156 ~GailvnvG~g  166 (542)
                      .+..++.++..
T Consensus        80 ~~~~~id~st~   90 (152)
T d1i36a2          80 VRGIYVDINNI   90 (152)
T ss_dssp             CCSEEEECSCC
T ss_pred             CCceeeccCcC
Confidence            35567666644

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.61  E-value=6.2e-05  Score=64.68  Aligned_cols=64  Identities=27%  Similarity=0.406  Sum_probs=50.4

Q ss_pred             EEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhc-CCceeeC--------HHHH-hcCCcEEEEcCCC
Q psy4626          79 QVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACM-DGFSVVK--------LNEV-IRTVDIVVTATGN  142 (542)
Q Consensus        79 tVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~-~G~~v~~--------l~e~-l~~aDvVi~atG~  142 (542)
                      +|+|+|+|.+|+.+++.|...|.+|+++|.||.+..++.. .+..++.        ++++ +..+|.++.++.+
T Consensus         2 ~IvI~G~G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~~~~vi~Gd~~~~~~l~~~~i~~a~~vv~~t~~   75 (132)
T d1lssa_           2 YIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVTGK   75 (132)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECCSC
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCCcceecCChhhhhhhhhhhhhhhccCcccchhhhhhcChhhhhhhcccCCc
Confidence            7999999999999999999999999999999987765543 3555431        1222 4789999988765

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=97.61  E-value=6e-05  Score=66.40  Aligned_cols=86  Identities=16%  Similarity=0.203  Sum_probs=64.0

Q ss_pred             EEEEEcCChhHHHHHHHHHhCC-CEEEEEeCCchhhhhh-hcCCceeeCHHHHhcCCcEEEEcCCCcccCCHHHHhccC-
Q psy4626          79 QVVLCGYGEVGKGCCQSLKGLG-CVIYITEIDPICALQA-CMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHMDKMK-  155 (542)
Q Consensus        79 tVvViG~G~IG~~vA~~l~~~G-a~Viv~d~dp~r~~~A-~~~G~~v~~l~e~l~~aDvVi~atG~~~lI~~e~l~~mk-  155 (542)
                      ++++||+|.+|..+++.+...| -+|+++|+++.+.... ...|+.+.+-.+.+..+|+||.|+- +..+ .+.++.++ 
T Consensus         2 kI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r~~~~~~~l~~~~~~~~~~~~~~v~~~Div~lavk-P~~~-~~v~~~l~~   79 (152)
T d1yqga2           2 NVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKELGVETSATLPELHSDDVLILAVK-PQDM-EAACKNIRT   79 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHHTCCEEESSCCCCCTTSEEEECSC-HHHH-HHHHTTCCC
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCCCcEEEEeCChhHHHHhhhhcccccccccccccccceEEEecC-HHHH-HHhHHHHhh
Confidence            6899999999999999876666 7999999999876543 3457776665566788999999974 3334 34566554 


Q ss_pred             CCeEEEeccCC
Q psy4626         156 NGCVVCNMGHS  166 (542)
Q Consensus       156 ~GailvnvG~g  166 (542)
                      .+..++++..+
T Consensus        80 ~~~~viS~~ag   90 (152)
T d1yqga2          80 NGALVLSVAAG   90 (152)
T ss_dssp             TTCEEEECCTT
T ss_pred             cccEEeecccC
Confidence            46677776654

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=97.56  E-value=7.8e-05  Score=65.35  Aligned_cols=81  Identities=14%  Similarity=0.281  Sum_probs=63.2

Q ss_pred             cCcEEEEEc-CChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCCcEEEEcCCCcccC--CHHHHh
Q psy4626          76 GGKQVVLCG-YGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNKNVV--TREHMD  152 (542)
Q Consensus        76 ~GktVvViG-~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~aDvVi~atG~~~lI--~~e~l~  152 (542)
                      .=++|+||| +|.+|..+|+.|+..|.+|.++|+++....            +..+.++|+++.++......  -.+.+.
T Consensus         8 ~~~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~~~~~------------~~~~~~~~~v~~~~~~~~~~~v~~~~~~   75 (152)
T d2pv7a2           8 DIHKIVIVGGYGKLGGLFARYLRASGYPISILDREDWAVA------------ESILANADVVIVSVPINLTLETIERLKP   75 (152)
T ss_dssp             TCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCGGGH------------HHHHTTCSEEEECSCGGGHHHHHHHHGG
T ss_pred             CCCeEEEEcCCCHHHHHHHHHHHHcCCCcEeccccccccc------------chhhhhccccccccchhhheeeeecccc
Confidence            457899999 899999999999999999999998765332            34567899999987432221  145677


Q ss_pred             ccCCCeEEEeccCCCc
Q psy4626         153 KMKNGCVVCNMGHSNT  168 (542)
Q Consensus       153 ~mk~GailvnvG~g~~  168 (542)
                      .+++++++++++.-..
T Consensus        76 ~~~~~~iiiD~~Svk~   91 (152)
T d2pv7a2          76 YLTENMLLADLTSVKR   91 (152)
T ss_dssp             GCCTTSEEEECCSCCH
T ss_pred             cccCCceEEEecccCH
Confidence            8899999999997653

>d1qmga2 c.2.1.6 (A:82-307) Class II ketol-acid reductoisomerase (KARI) {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class II ketol-acid reductoisomerase (KARI)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=97.54  E-value=9.5e-05  Score=69.41  Aligned_cols=89  Identities=24%  Similarity=0.300  Sum_probs=67.9

Q ss_pred             ccC-cEEEEEcCChhHHHHHHHHHh------CCCEEEEE-eCCchhhhhhhcCCce-----eeCHHHHhcCCcEEEEcCC
Q psy4626          75 FGG-KQVVLCGYGEVGKGCCQSLKG------LGCVIYIT-EIDPICALQACMDGFS-----VVKLNEVIRTVDIVVTATG  141 (542)
Q Consensus        75 l~G-ktVvViG~G~IG~~vA~~l~~------~Ga~Viv~-d~dp~r~~~A~~~G~~-----v~~l~e~l~~aDvVi~atG  141 (542)
                      +.| |+|+|+|||.-|..-|..||.      .|.+|+|- .....-...|..+|+.     +.+.+|+++.||+|...+.
T Consensus        41 ~kg~KkIaViGYGsQG~AhAlNLrDSG~~~~sgv~V~VGLr~gs~S~~kA~~dGf~v~~~~v~~v~EAv~~ADiVmiLlP  120 (226)
T d1qmga2          41 FKGIKQIGVIGWGSQAPAQAQNLKDSLTEAKSDVVVKIGLRKGSNSFAEARAAGFSEENGTLGDMWETISGSDLVLLLIS  120 (226)
T ss_dssp             TTTCSEEEEECCSSHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHHHTTCCGGGTCEEEHHHHHHTCSEEEECSC
T ss_pred             hcCCCEEEEEEeccHHHHHHHhChhhcccccCCceEEEEeCCCChhHHHHHHcCCccCCCcccCHHHHHhhCCEEEEecc
Confidence            467 899999999999999999998      55777774 3232334568889987     6678899999999999764


Q ss_pred             C---cccCCHHHHhccCCCeEEEecc
Q psy4626         142 N---KNVVTREHMDKMKNGCVVCNMG  164 (542)
Q Consensus       142 ~---~~lI~~e~l~~mk~GailvnvG  164 (542)
                      .   +.+. .+....||+|..+...-
T Consensus       121 De~Q~~vy-~~I~p~Lk~G~~L~FaH  145 (226)
T d1qmga2         121 DSAQADNY-EKVFSHMKPNSILGLSH  145 (226)
T ss_dssp             HHHHHHHH-HHHHHHSCTTCEEEESS
T ss_pred             hHHHHHHH-HHHHHhcCCCceeeecc
Confidence            2   2344 35667899999987643

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=97.49  E-value=0.0002  Score=64.89  Aligned_cols=105  Identities=19%  Similarity=0.153  Sum_probs=69.5

Q ss_pred             HHHHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCCC-EEEEEeCCchhhhhhh----cC----Cc--eeeC-----
Q psy4626          62 SIIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQAC----MD----GF--SVVK-----  125 (542)
Q Consensus        62 s~~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga-~Viv~d~dp~r~~~A~----~~----G~--~v~~-----  125 (542)
                      +...+++.. +..+.|++|+|+|+|-.|++++..|...|+ +++++++++.+...+.    ..    ..  ...+     
T Consensus         4 Gf~~~l~~~-~~~l~~k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~   82 (182)
T d1vi2a1           4 GHIRAIKES-GFDIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQ   82 (182)
T ss_dssp             HHHHHHHHT-TCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHH
T ss_pred             HHHHHHHHc-CCCcCCCEEEEECCcHHHHHHHHHHhhcCCceEeeeccchHHHHHHHHHHHHHHhhcCcceEeeeccccc
Confidence            345555443 567899999999999999999999999999 8999999886543221    11    11  1122     


Q ss_pred             -HHHHhcCCcEEEEcCC--CcccCC---HHHHhccCCCeEEEeccCCC
Q psy4626         126 -LNEVIRTVDIVVTATG--NKNVVT---REHMDKMKNGCVVCNMGHSN  167 (542)
Q Consensus       126 -l~e~l~~aDvVi~atG--~~~lI~---~e~l~~mk~GailvnvG~g~  167 (542)
                       +.+.+..+|+||+||.  ..+...   ...+..++++..++.+--.+
T Consensus        83 ~~~~~~~~~diiIN~Tp~G~~~~~~~~~~~~~~~~~~~~~v~Di~Y~p  130 (182)
T d1vi2a1          83 AFAEALASADILTNGTKVGMKPLENESLVNDISLLHPGLLVTECVYNP  130 (182)
T ss_dssp             HHHHHHHTCSEEEECSSTTSTTSCSCCSCCCGGGSCTTCEEEECCCSS
T ss_pred             chhhhhcccceeccccCCccccccchhhhhHHHhhhcchhhHHhhcCc
Confidence             2344678999999873  221111   01245677888887775443

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=97.45  E-value=4.2e-05  Score=70.09  Aligned_cols=88  Identities=20%  Similarity=0.236  Sum_probs=59.6

Q ss_pred             cEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhc-----------CCce-------------eeCHHHHhcCC
Q psy4626          78 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACM-----------DGFS-------------VVKLNEVIRTV  133 (542)
Q Consensus        78 ktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~-----------~G~~-------------v~~l~e~l~~a  133 (542)
                      ++|+|+|+|.+|.++|..+...|.+|+++|+++.....+..           .+..             ..+..+.+.++
T Consensus         5 ~~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a   84 (186)
T d1wdka3           5 KQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSYGDFGNV   84 (186)
T ss_dssp             SSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEESSSTTGGGC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHHHHhhhhhhhhhhHHhhhcccccchhhhhhhhceeeccccccccccc
Confidence            57999999999999999999999999999999865443211           1100             11112345789


Q ss_pred             cEEEEcCCCc-----ccCCHHHHhccCCCeEEEeccCC
Q psy4626         134 DIVVTATGNK-----NVVTREHMDKMKNGCVVCNMGHS  166 (542)
Q Consensus       134 DvVi~atG~~-----~lI~~e~l~~mk~GailvnvG~g  166 (542)
                      |+||++....     .++ .+.-+.+++++++.+..++
T Consensus        85 dlViEav~E~l~~K~~lf-~~l~~~~~~~~IiaSnTS~  121 (186)
T d1wdka3          85 DLVVEAVVENPKVKQAVL-AEVENHVREDAILASNTST  121 (186)
T ss_dssp             SEEEECCCSCHHHHHHHH-HHHHTTSCTTCEEEECCSS
T ss_pred             ceeeeeecchHHHHHHHH-HHHHhhcCCCeeEEecccc
Confidence            9999986422     222 2333456889998855543

>d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM1727
species: Thermotoga maritima [TaxId: 2336]

Probab=97.42  E-value=2.5e-05  Score=68.61  Aligned_cols=85  Identities=13%  Similarity=0.084  Sum_probs=60.0

Q ss_pred             EEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhc-CCceeeCHHHHhcCCcEEEEcCCCcccCCHHHHhccC-CC
Q psy4626          80 VVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACM-DGFSVVKLNEVIRTVDIVVTATGNKNVVTREHMDKMK-NG  157 (542)
Q Consensus        80 VvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~-~G~~v~~l~e~l~~aDvVi~atG~~~lI~~e~l~~mk-~G  157 (542)
                      +++||+|.+|+.++..|+..+-.+.++++++.++..... .+....+.+++++.+|+||.|... ..+ .+.++.++ ++
T Consensus         2 IgfIG~G~mg~~l~~~L~~~~~~~~v~~R~~~~~~~l~~~~~~~~~~~~~~~~~~DiVil~v~d-~~i-~~v~~~l~~~~   79 (153)
T d2i76a2           2 LNFVGTGTLTRFFLECLKDRYEIGYILSRSIDRARNLAEVYGGKAATLEKHPELNGVVFVIVPD-RYI-KTVANHLNLGD   79 (153)
T ss_dssp             CEEESCCHHHHHHHHTTC----CCCEECSSHHHHHHHHHHTCCCCCSSCCCCC---CEEECSCT-TTH-HHHHTTTCCSS
T ss_pred             EEEEeCcHHHHHHHHHHHhCCCEEEEEeCChhhhcchhhcccccccchhhhhccCcEEEEeccc-hhh-hHHHhhhcccc
Confidence            689999999999999997754445689999988765433 444566778889999999999854 345 36777774 78


Q ss_pred             eEEEeccCC
Q psy4626         158 CVVCNMGHS  166 (542)
Q Consensus       158 ailvnvG~g  166 (542)
                      .++++++.+
T Consensus        80 ~ivi~~s~~   88 (153)
T d2i76a2          80 AVLVHCSGF   88 (153)
T ss_dssp             CCEEECCSS
T ss_pred             eeeeecccc
Confidence            888888754

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=97.36  E-value=0.00012  Score=64.35  Aligned_cols=90  Identities=14%  Similarity=0.077  Sum_probs=62.6

Q ss_pred             cCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhc-CCceee---------CHHHHhcCCcEEEEcCCCccc
Q psy4626          76 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACM-DGFSVV---------KLNEVIRTVDIVVTATGNKNV  145 (542)
Q Consensus        76 ~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~-~G~~v~---------~l~e~l~~aDvVi~atG~~~l  145 (542)
                      ++|+|+|+|+|.+|+.+|+.|...|.+|+++|+++.++..... .+....         ..++.+...|+++.++.....
T Consensus         1 ~~K~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~   80 (182)
T d1e5qa1           1 ATKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEVAKHDLVISLIPYTFH   80 (182)
T ss_dssp             CCCEEEEECCSTTHHHHHHHHHTTTCEEEEEESCHHHHHHHHTTCTTEEEEECCTTCHHHHHHHHTTSSEEEECSCGGGH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEECChHHHHHHHhcccccccccccccchhhhHhhhhccceeEeeccchhh
Confidence            4789999999999999999999999999999999988765332 221111         123456788998887643322


Q ss_pred             CCHHHHhccCCCeEEEeccCC
Q psy4626         146 VTREHMDKMKNGCVVCNMGHS  166 (542)
Q Consensus       146 I~~e~l~~mk~GailvnvG~g  166 (542)
                      . .......+.++.++..+..
T Consensus        81 ~-~~~~~~~~~~~~~~~~~~~  100 (182)
T d1e5qa1          81 A-TVIKSAIRQKKHVVTTSYV  100 (182)
T ss_dssp             H-HHHHHHHHHTCEEECSSCC
T ss_pred             h-HHHHHHHhhccceeecccC
Confidence            2 1233445677777776643

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.35  E-value=0.00055  Score=62.89  Aligned_cols=86  Identities=13%  Similarity=0.181  Sum_probs=61.0

Q ss_pred             EEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCc----------------------eeeCHHHHhcCCcEE
Q psy4626          79 QVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGF----------------------SVVKLNEVIRTVDIV  136 (542)
Q Consensus        79 tVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~----------------------~v~~l~e~l~~aDvV  136 (542)
                      +|+|+|+|.+|..+|..+...|.+|+++|.|+.+...- ..|.                      ...+..++++.+|++
T Consensus         2 kI~ViGlG~vGl~~a~~la~~g~~V~g~D~n~~~i~~l-n~g~~p~~e~~~~~~l~~~~~~~~~~~~~~~~~~i~~~d~i   80 (202)
T d1mv8a2           2 RISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLI-NQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVLDSDVS   80 (202)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHH-HTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHHTCSEE
T ss_pred             EEEEECCCHhHHHHHHHHHhCCCcEEEEeCCHHHHHHh-cccCCcccchhhhhhhhhhhcccccccCCCHHHHHhhCCEE
Confidence            69999999999999999999999999999998764321 1110                      123456778899999


Q ss_pred             EEcCCCcccCC---------------HHHHhccCCCeEEEeccC
Q psy4626         137 VTATGNKNVVT---------------REHMDKMKNGCVVCNMGH  165 (542)
Q Consensus       137 i~atG~~~lI~---------------~e~l~~mk~GailvnvG~  165 (542)
                      +.|.+++.--+               .+.+...+++..++.-+.
T Consensus        81 ~i~VpTP~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~liii~ST  124 (202)
T d1mv8a2          81 FICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVVRST  124 (202)
T ss_dssp             EECCCCCBCTTSSBCCHHHHHHHHHHHHHHTTCCSCCEEEECSC
T ss_pred             EEecCccccccccccchhhhhhhhhhhheeecccCCcceeeccc
Confidence            99988752111               123344567777776554

>d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Ornithine cyclodeaminase
species: Pseudomonas putida [TaxId: 303]

Probab=97.20  E-value=0.00071  Score=67.61  Aligned_cols=98  Identities=26%  Similarity=0.458  Sum_probs=74.7

Q ss_pred             CcEEEEEcCChhHHHHHHHH-HhCCC-EEEEEeCCchhhhhh-----hcCCcee---eCHHHHhcCCcEEEEcCCCc---
Q psy4626          77 GKQVVLCGYGEVGKGCCQSL-KGLGC-VIYITEIDPICALQA-----CMDGFSV---VKLNEVIRTVDIVVTATGNK---  143 (542)
Q Consensus        77 GktVvViG~G~IG~~vA~~l-~~~Ga-~Viv~d~dp~r~~~A-----~~~G~~v---~~l~e~l~~aDvVi~atG~~---  143 (542)
                      -++++|||+|..+..-++++ .-++. +|.+++++|.+....     ...|+.+   .++++++++||||++||.++   
T Consensus       128 a~~l~iiG~G~QA~~~~~a~~~v~~i~~V~v~~r~~~~~~~~~~~l~~~~g~~v~~~~s~~eav~~ADIi~t~Tas~s~~  207 (340)
T d1x7da_         128 ARKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKEYSGLTIRRASSVAEAVKGVDIITTVTADKAYA  207 (340)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTTCTTCEEEECSSHHHHHTTCSEEEECCCCSSEE
T ss_pred             CceEEEEcccHHHHHHHHHHhhhcceeeeEEEecChHHHHHHHHhhhhccCCCceecCCHHHHHhcCCceeeccccCCCC
Confidence            57999999999998777766 56776 999999998765321     1235553   36889999999999988543   


Q ss_pred             ccCCHHHHhccCCCeEEEeccCC---CcccChHhhcC
Q psy4626         144 NVVTREHMDKMKNGCVVCNMGHS---NTEIDVNSLRT  177 (542)
Q Consensus       144 ~lI~~e~l~~mk~GailvnvG~g---~~eid~~aL~~  177 (542)
                      ++++.   +.+|+|..+..+|..   ..|++.+-+..
T Consensus       208 Pv~~~---~~l~pG~hI~aiGs~~p~~~Eld~~~l~~  241 (340)
T d1x7da_         208 TIITP---DMLEPGMHLNAVGGDCPGKTELHADVLRN  241 (340)
T ss_dssp             EEECG---GGCCTTCEEEECSCCBTTBEEECHHHHHT
T ss_pred             cccch---hhcCCCCEEeecccchhhhhccCHHHHhc
Confidence            57763   568999999999986   26888776653

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.19  E-value=0.0019  Score=57.91  Aligned_cols=101  Identities=18%  Similarity=0.138  Sum_probs=63.8

Q ss_pred             HHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhc-C----C------ceeeCHHHHhcC
Q psy4626          64 IDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACM-D----G------FSVVKLNEVIRT  132 (542)
Q Consensus        64 ~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~-~----G------~~v~~l~e~l~~  132 (542)
                      ..++.+.. ..+.||+|+|+|+|-.++.++..|...| +|.++.+++.++..-.. .    .      ....+++..+..
T Consensus         6 ~~~l~~~~-~~~~~k~vlIlGaGG~arai~~aL~~~~-~i~I~nR~~~ka~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (177)
T d1nvta1           6 RMALEEEI-GRVKDKNIVIYGAGGAARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEKLNKKFGEEVKFSGLDVDLDG   83 (177)
T ss_dssp             HHHHHHHH-CCCCSCEEEEECCSHHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHHHHTCCHHHHEEEECTTCCCTT
T ss_pred             HHHHHHhC-CCcCCCEEEEECCcHHHHHHHHHHcccc-ceeeehhhhhHHHHHHHHHHHhhchhhhhhhhhhhhhhccch
Confidence            33444432 3589999999999999999999998777 99999999887643110 0    0      112233445578


Q ss_pred             CcEEEEcCCCc--ccCCH---HHHhccCCCeEEEeccCC
Q psy4626         133 VDIVVTATGNK--NVVTR---EHMDKMKNGCVVCNMGHS  166 (542)
Q Consensus       133 aDvVi~atG~~--~lI~~---e~l~~mk~GailvnvG~g  166 (542)
                      +|++|.||...  +....   -.++.++++.++..+-..
T Consensus        84 ~dliIn~tp~g~~~~~~~~~~~~~~~~~~~~~v~D~~y~  122 (177)
T d1nvta1          84 VDIIINATPIGMYPNIDVEPIVKAEKLREDMVVMDLIYN  122 (177)
T ss_dssp             CCEEEECSCTTCTTCCSSCCSSCSTTCCSSSEEEECCCS
T ss_pred             hhhhccCCcccccccccccchhhhhccCcccceeeecCC
Confidence            99999987421  11110   113445566666665544

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=97.15  E-value=0.00032  Score=61.34  Aligned_cols=88  Identities=10%  Similarity=0.038  Sum_probs=60.1

Q ss_pred             cEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCc---e-----eeCHHHHhcCCcEEEEcCCCcccCC--
Q psy4626          78 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGF---S-----VVKLNEVIRTVDIVVTATGNKNVVT--  147 (542)
Q Consensus        78 ktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~---~-----v~~l~e~l~~aDvVi~atG~~~lI~--  147 (542)
                      .+|+|+|+|.+|..+|..|...|.+|.++++++.+.......+.   .     ..+..+.+..+|+++.++....+-.  
T Consensus         1 MkI~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~iii~vka~~~~~~~   80 (167)
T d1ks9a2           1 MKITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPYCSVNLVETDGSIFNESLTANDPDFLATSDLLLVTLKAWQVSDAV   80 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSEEEEEEECTTSCEEEEEEEESCHHHHHTCSEEEECSCGGGHHHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCceEEEEcCHHHhhhhccccCCccccccccccchhhhhcccceEEEeecccchHHHH
Confidence            37999999999999999999999999999998865432211111   1     1233456789999999986654322  


Q ss_pred             HHHHhccCCCeEEEeccC
Q psy4626         148 REHMDKMKNGCVVCNMGH  165 (542)
Q Consensus       148 ~e~l~~mk~GailvnvG~  165 (542)
                      .+....+.++..++...-
T Consensus        81 ~~l~~~~~~~~~Iv~~qN   98 (167)
T d1ks9a2          81 KSLASTLPVTTPILLIHN   98 (167)
T ss_dssp             HHHHTTSCTTSCEEEECS
T ss_pred             HhhccccCcccEEeeccC
Confidence            122335567777776543

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.14  E-value=0.00054  Score=62.42  Aligned_cols=68  Identities=16%  Similarity=0.189  Sum_probs=53.8

Q ss_pred             cCcEEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceee--------CHHHHhcCCcEEEEcCCCc
Q psy4626          76 GGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVV--------KLNEVIRTVDIVVTATGNK  143 (542)
Q Consensus        76 ~GktVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~--------~l~e~l~~aDvVi~atG~~  143 (542)
                      ..|+|+|+|+ |.||+.+++.|...|.+|+++.++|.+.......+.+++        +++++++++|+||.+.|..
T Consensus         2 ~~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~~~~~~~~~~~~~~~~gD~~d~~~l~~al~~~d~vi~~~g~~   78 (205)
T d1hdoa_           2 AVKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGPRPAHVVVGDVLQAADVDKTVAGQDAVIVLLGTR   78 (205)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSSSCCCSEEEESCTTSHHHHHHHHTTCSEEEECCCCT
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcChhhcccccccccccccccccchhhHHHHhcCCCEEEEEeccC
Confidence            4689999995 999999999999999999999999987654334455543        1346689999999988753

>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Pyrobaculum islandicum [TaxId: 2277]

Probab=97.13  E-value=0.0013  Score=62.65  Aligned_cols=99  Identities=21%  Similarity=0.233  Sum_probs=63.5

Q ss_pred             HHHHHHHHHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEe-CCc----------hhhh-----------
Q psy4626          57 YMCRESIIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITE-IDP----------ICAL-----------  114 (542)
Q Consensus        57 ~g~~~s~~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d-~dp----------~r~~-----------  114 (542)
                      ||.-.++-.+++.. +..+.|++|+|-|+|.+|..+|+.|...|++|+.++ .+.          ....           
T Consensus        12 ~Gv~~~~~~~~~~~-~~~l~g~~v~IqGfGnVG~~~a~~L~~~Gakvv~vsD~~g~i~~~~Gld~~~l~~~~~~~~~~~~   90 (242)
T d1v9la1          12 FGVAVATREMAKKL-WGGIEGKTVAIQGMGNVGRWTAYWLEKMGAKVIAVSDINGVAYRKEGLNVELIQKNKGLTGPALV   90 (242)
T ss_dssp             HHHHHHHHHHHHHH-HSCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSCEEECTTCCCTHHHHHTTTSCHHHHH
T ss_pred             HHHHHHHHHHHHHc-CCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEeecccccccccccccHHHHHHHhhcchhhHH
Confidence            34443333333333 246899999999999999999999999999998654 221          1110           


Q ss_pred             --hhhcCCceee-CHHHHh-cCCcEEEEcCCCcccCCHHHHhccCCC
Q psy4626         115 --QACMDGFSVV-KLNEVI-RTVDIVVTATGNKNVVTREHMDKMKNG  157 (542)
Q Consensus       115 --~A~~~G~~v~-~l~e~l-~~aDvVi~atG~~~lI~~e~l~~mk~G  157 (542)
                        .....+.... +.++++ ..|||++-|. ..+.|+.+..+.++-.
T Consensus        91 ~~~~~~~~~~~~~~~~~i~~~~~DIliPcA-~~~~I~~~~a~~i~ak  136 (242)
T d1v9la1          91 ELFTTKDNAEFVKNPDAIFKLDVDIFVPAA-IENVIRGDNAGLVKAR  136 (242)
T ss_dssp             HHHHHTSCCCCCSSTTGGGGCCCSEEEECS-CSSCBCTTTTTTCCCS
T ss_pred             HhhhhccCceEeeCcchhccccccEEeecc-hhccccHHHHHhcccC
Confidence              0112233322 334555 5899999986 3357887888877643

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.13  E-value=0.0008  Score=59.20  Aligned_cols=67  Identities=27%  Similarity=0.348  Sum_probs=48.9

Q ss_pred             cCcEEEEEcCChhHHHHHHHHHhCCC--EEEEEeCCchhhh-hhh------c-CCce--e-eCHHHHhcCCcEEEEcCCC
Q psy4626          76 GGKQVVLCGYGEVGKGCCQSLKGLGC--VIYITEIDPICAL-QAC------M-DGFS--V-VKLNEVIRTVDIVVTATGN  142 (542)
Q Consensus        76 ~GktVvViG~G~IG~~vA~~l~~~Ga--~Viv~d~dp~r~~-~A~------~-~G~~--v-~~l~e~l~~aDvVi~atG~  142 (542)
                      .+++|+|+|+|.+|..+|..+...|.  ++..+|+++.++. ++.      . .+..  + ....+.+++||+|+.+.|.
T Consensus         5 ~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~~~~~d~~~l~daDvvvitag~   84 (148)
T d1ldna1           5 GGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDYDDCRDADLVVICAGA   84 (148)
T ss_dssp             TSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCGGGTTTCSEEEECCSC
T ss_pred             CCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeeccccccchhccHhhCccccCCCeEEEECCHHHhccceeEEEeccc
Confidence            58899999999999999999987775  8999999987632 111      1 1111  1 1234668899999998774

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=97.11  E-value=0.00029  Score=63.20  Aligned_cols=89  Identities=9%  Similarity=0.127  Sum_probs=64.4

Q ss_pred             EEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCcee---------eCHHH---HhcCCcEEEEcCCCcccC
Q psy4626          79 QVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV---------VKLNE---VIRTVDIVVTATGNKNVV  146 (542)
Q Consensus        79 tVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v---------~~l~e---~l~~aDvVi~atG~~~lI  146 (542)
                      +|+|||.|.+|..+|+.|...|.+|++||+++.+.......+...         .+.+.   .+..++.++.+......+
T Consensus         3 kIGvIGlG~MG~~ma~~L~~~G~~V~~~dr~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (178)
T d1pgja2           3 DVGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFAASLKKPRKALILVQAGAAT   82 (178)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSTTGGGEEECSCHHHHHHHBCSSCEEEECCCCSHHH
T ss_pred             EEEEEeehHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHcCCccccccchhhhhhhhHHHHhcccceEEEEeecCcchh
Confidence            599999999999999999999999999999998876544333211         12222   235777777765433222


Q ss_pred             C---HHHHhccCCCeEEEeccCCC
Q psy4626         147 T---REHMDKMKNGCVVCNMGHSN  167 (542)
Q Consensus       147 ~---~e~l~~mk~GailvnvG~g~  167 (542)
                      .   ......++++.++++.+...
T Consensus        83 ~~~~~~~~~~~~~~~iii~~st~~  106 (178)
T d1pgja2          83 DSTIEQLKKVFEKGDILVDTGNAH  106 (178)
T ss_dssp             HHHHHHHHHHCCTTCEEEECCCCC
T ss_pred             hhhhhhhhhhccccceecccCccc
Confidence            1   25677789999999988765

>d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Archaeal alanine dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.05  E-value=0.0013  Score=65.03  Aligned_cols=97  Identities=22%  Similarity=0.260  Sum_probs=73.1

Q ss_pred             CcEEEEEcCChhHHHHHHHHH-hCCC-EEEEEeCCchhhhh----hhcCCce-eeCHHHHhcCCcEEEEcCC-CcccCCH
Q psy4626          77 GKQVVLCGYGEVGKGCCQSLK-GLGC-VIYITEIDPICALQ----ACMDGFS-VVKLNEVIRTVDIVVTATG-NKNVVTR  148 (542)
Q Consensus        77 GktVvViG~G~IG~~vA~~l~-~~Ga-~Viv~d~dp~r~~~----A~~~G~~-v~~l~e~l~~aDvVi~atG-~~~lI~~  148 (542)
                      -++++|+|.|..++..++.+. .+.. +|.+|++++.++..    ....+.. ..+.++++.+||||++||. +.+++..
T Consensus       125 ~~~l~iiGaG~QA~~~~~al~~~~~i~~i~v~~r~~e~~~~~~~~~~~~~~~~~~~~~~a~~~aDiV~taT~s~~P~~~~  204 (320)
T d1omoa_         125 SSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCEDRGISASVQPAEEASRCDVLVTTTPSRKPVVKA  204 (320)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHHTTCCEEECCHHHHTSSSEEEECCCCSSCCBCG
T ss_pred             ccEEEEecCcccHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHhcCCccccchhhhhccccEEEEeccCcccccch
Confidence            478999999999988877776 4665 99999999876532    1223443 3456778899999999875 5567764


Q ss_pred             HHHhccCCCeEEEeccCCC---cccChHhhc
Q psy4626         149 EHMDKMKNGCVVCNMGHSN---TEIDVNSLR  176 (542)
Q Consensus       149 e~l~~mk~GailvnvG~g~---~eid~~aL~  176 (542)
                         +.+++|+.+..+|...   .|+|.+.+.
T Consensus       205 ---~~l~~G~hv~~iGs~~p~~~Eld~~~~~  232 (320)
T d1omoa_         205 ---EWVEEGTHINAIGADGPGKQELDVEILK  232 (320)
T ss_dssp             ---GGCCTTCEEEECSCCSTTCCCBCHHHHH
T ss_pred             ---hhcCCCCeEeecCCccccccccCHHHhh
Confidence               4689999999999863   577776554

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=97.02  E-value=0.00036  Score=62.81  Aligned_cols=79  Identities=19%  Similarity=0.225  Sum_probs=56.8

Q ss_pred             HHHHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhh-hcC----CceeeCHHH-HhcCCcE
Q psy4626          62 SIIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQA-CMD----GFSVVKLNE-VIRTVDI  135 (542)
Q Consensus        62 s~~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A-~~~----G~~v~~l~e-~l~~aDv  135 (542)
                      +.+.++.+. +..+.|++|+|+|+|-.++.++..|...+.+|+++.+++.++..- ...    .......++ .+..+|+
T Consensus         4 Gf~~~l~~~-~~~~~~k~vlIlGaGGaarai~~aL~~~~~~i~I~nR~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~di   82 (171)
T d1p77a1           4 GLVTDLQRL-NWLRPNQHVLILGAGGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPYGNIQAVSMDSIPLQTYDL   82 (171)
T ss_dssp             HHHHHHHHT-TCCCTTCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGSCEEEEEGGGCCCSCCSE
T ss_pred             HHHHHHHHc-CCCCCCCEEEEECCcHHHHHHHHHHcccCceeeeccchHHHHHHHHHHHhhccccchhhhccccccccce
Confidence            344555443 467899999999999999999999998888999999998775432 111    122233322 3578999


Q ss_pred             EEEcCC
Q psy4626         136 VVTATG  141 (542)
Q Consensus       136 Vi~atG  141 (542)
                      +|.||.
T Consensus        83 iIN~tp   88 (171)
T d1p77a1          83 VINATS   88 (171)
T ss_dssp             EEECCC
T ss_pred             eeeccc
Confidence            999974

>d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.01  E-value=0.0027  Score=60.17  Aligned_cols=101  Identities=19%  Similarity=0.240  Sum_probs=65.3

Q ss_pred             HHHHHHHHHHHHHhhcCccccCcEEEEEcCChhHHHHHHHHH-hCCCEEEEE-eCCc----------hhhhhh-------
Q psy4626          56 LYMCRESIIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLK-GLGCVIYIT-EIDP----------ICALQA-------  116 (542)
Q Consensus        56 ~~g~~~s~~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~-~~Ga~Viv~-d~dp----------~r~~~A-------  116 (542)
                      .||.-.++-++++......+.|++|+|-|+|.+|..+|+.|. ..|++|+.+ |.+.          ....+.       
T Consensus        11 g~Gv~~~~~~~~~~~g~~~l~g~~v~IqGfGnVG~~~a~~L~~~~G~kvv~vsD~~g~i~~~~G~d~~~l~~~~~~~~~~   90 (239)
T d1gtma1          11 ARGASYTIREAAKVLGWDTLKGKTIAIQGYGNAGYYLAKIMSEDFGMKVVAVSDSKGGIYNPDGLNADEVLKWKNEHGSV   90 (239)
T ss_dssp             HHHHHHHHHHHHHHTTCSCSTTCEEEEECCSHHHHHHHHHHHHTTCCEEEEEECSSCEEEEEEEECHHHHHHHHHHHSSS
T ss_pred             hHHHHHHHHHHHHHhCCCCcCCCEEEEECCCHHHHHHHHHHHHhcCcceeeccccccceecCCcCCHHHHHHHHHhcccc
Confidence            344444444444433223589999999999999999999885 679987764 4321          111110       


Q ss_pred             -hcCCceeeCHHHHh-cCCcEEEEcCCCcccCCHHHHhccCCC
Q psy4626         117 -CMDGFSVVKLNEVI-RTVDIVVTATGNKNVVTREHMDKMKNG  157 (542)
Q Consensus       117 -~~~G~~v~~l~e~l-~~aDvVi~atG~~~lI~~e~l~~mk~G  157 (542)
                       ...|...++.++++ ..|||++-|.. .+.|+.+..+.++-.
T Consensus        91 ~~~~~~~~~~~~~i~~~~~DIl~PcA~-~~~I~~~~a~~i~ak  132 (239)
T d1gtma1          91 KDFPGATNITNEELLELEVDVLAPAAI-EEVITKKNADNIKAK  132 (239)
T ss_dssp             TTCTTSEEECHHHHHHSCCSEEEECSC-SCCBCTTGGGGCCCS
T ss_pred             ccCCCCeeecccccccccccEEeeccc-cccccHHHHHhcccc
Confidence             01234456667766 68999999863 468887777777554

>d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=97.01  E-value=0.00053  Score=60.33  Aligned_cols=88  Identities=14%  Similarity=0.052  Sum_probs=60.2

Q ss_pred             EEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCCcEEEEcCCCcccC---CHHHHhccC
Q psy4626          79 QVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNKNVV---TREHMDKMK  155 (542)
Q Consensus        79 tVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~aDvVi~atG~~~lI---~~e~l~~mk  155 (542)
                      +|++||.|.+|..+|+.|...|..| ++++++.+.......+.......+.+..+|+++.+.-+...+   ....+..++
T Consensus         2 kIg~IGlG~MG~~ma~~L~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~l~~~~~   80 (156)
T d2cvza2           2 KVAFIGLGAMGYPMAGHLARRFPTL-VWNRTFEKALRHQEEFGSEAVPLERVAEARVIFTCLPTTREVYEVAEALYPYLR   80 (156)
T ss_dssp             CEEEECCSTTHHHHHHHHHTTSCEE-EECSSTHHHHHHHHHHCCEECCGGGGGGCSEEEECCSSHHHHHHHHHHHTTTCC
T ss_pred             eEEEEeHHHHHHHHHHHHHhCCCEE-EEeCCHHHHHHHHHHcCCcccccccccceeEEEecccchhhhhhhhcccccccc
Confidence            6999999999999999999888766 555556554433333222333345556789888865332221   134677889


Q ss_pred             CCeEEEeccCCC
Q psy4626         156 NGCVVCNMGHSN  167 (542)
Q Consensus       156 ~GailvnvG~g~  167 (542)
                      ++.++++++..+
T Consensus        81 ~~~~iid~sT~~   92 (156)
T d2cvza2          81 EGTYWVDATSGE   92 (156)
T ss_dssp             TTEEEEECSCCC
T ss_pred             ccccccccccCC
Confidence            999999988775

>d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.00  E-value=0.0049  Score=58.17  Aligned_cols=87  Identities=17%  Similarity=0.208  Sum_probs=61.7

Q ss_pred             hcCccccCcEEEEEcCChhHHHHHHHH-HhCCCEEEEEeC-----------Cchhhhhh--------hcCCceeeCHHHH
Q psy4626          70 STDVMFGGKQVVLCGYGEVGKGCCQSL-KGLGCVIYITEI-----------DPICALQA--------CMDGFSVVKLNEV  129 (542)
Q Consensus        70 ~~~~~l~GktVvViG~G~IG~~vA~~l-~~~Ga~Viv~d~-----------dp~r~~~A--------~~~G~~v~~l~e~  129 (542)
                      ..+..+.|++|+|-|+|++|..+|+.| +..|++|+.++-           |...+...        ...+.+..+.++.
T Consensus        24 ~~~~~l~g~~vaIqG~GnVG~~~a~~L~~e~Ga~vv~vsd~~G~i~~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~~  103 (234)
T d1b26a1          24 VLGIDPKKATVAVQGFGNVGQFAALLISQELGSKVVAVSDSRGGIYNPEGFDVEELIRYKKEHGTVVTYPKGERITNEEL  103 (234)
T ss_dssp             HTTCCTTTCEEEEECCSHHHHHHHHHHHHHHCCEEEEEEETTEEEECTTCCCHHHHHHHHHHSSCSTTCSSCEEECHHHH
T ss_pred             HcCCCcCCCEEEEECCCHHHHHHHHHHHHhcCCceEEeecCCCcEEeccccchHHHHHHHHhhcceeccccceeeccccc
Confidence            345678999999999999999999999 578999887641           11111111        1122334566676


Q ss_pred             h-cCCcEEEEcCCCcccCCHHHHhccCCC
Q psy4626         130 I-RTVDIVVTATGNKNVVTREHMDKMKNG  157 (542)
Q Consensus       130 l-~~aDvVi~atG~~~lI~~e~l~~mk~G  157 (542)
                      + ..|||++-|. ..+.|+.+..+.++-.
T Consensus       104 ~~~~~DI~~PcA-~~~~I~~~~a~~l~~~  131 (234)
T d1b26a1         104 LELDVDILVPAA-LEGAIHAGNAERIKAK  131 (234)
T ss_dssp             HTSCCSEEEECS-CTTCBCHHHHTTCCCS
T ss_pred             cccccceeecch-hcccccHHHHHHhhhc
Confidence            6 4899999985 4468998889988765

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=96.95  E-value=0.0013  Score=55.13  Aligned_cols=83  Identities=16%  Similarity=0.219  Sum_probs=54.5

Q ss_pred             cccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeC---HHH---Hh--cCCcEEEEcCCCccc
Q psy4626          74 MFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVK---LNE---VI--RTVDIVVTATGNKNV  145 (542)
Q Consensus        74 ~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~---l~e---~l--~~aDvVi~atG~~~l  145 (542)
                      ...+.+|+|+|.|.+|+.++..++.+|.+|+++|.++........+.+.+.+   .+.   ..  ..+|+|.--..+   
T Consensus         8 ~~~~~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~~~PA~~va~~~i~~~~~d~~~l~~~~~~~~~DviT~E~En---   84 (111)
T d1kjqa2           8 RPAATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYADAPAMHVAHRSHVINMLDGDALRRVVELEKPHYIVPEIEA---   84 (111)
T ss_dssp             STTCCEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTTCGGGGGSSEEEECCTTCHHHHHHHHHHHCCSEEEECSSC---
T ss_pred             CCCCCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCCCCchhhcCCeEEECCCCCHHHHHHHHHhhCCceEEEEecC---
Confidence            3456789999999999999999999999999999877643322222222222   222   22  357998654333   


Q ss_pred             CCHHHHhcc-CCCeE
Q psy4626         146 VTREHMDKM-KNGCV  159 (542)
Q Consensus       146 I~~e~l~~m-k~Gai  159 (542)
                      |+.+.++.+ +.|..
T Consensus        85 I~~~~L~~le~~g~~   99 (111)
T d1kjqa2          85 IATDMLIQLEEEGLN   99 (111)
T ss_dssp             SCHHHHHHHHHTTCE
T ss_pred             cCHHHHHHHHHCCCe
Confidence            445677666 44433

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.93  E-value=0.0002  Score=62.83  Aligned_cols=36  Identities=28%  Similarity=0.392  Sum_probs=33.0

Q ss_pred             ccccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeC
Q psy4626          73 VMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEI  108 (542)
Q Consensus        73 ~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~  108 (542)
                      ..+.||+|+|+|.|++|..-++.|...||+|+|+..
T Consensus         9 ~~l~gkrvLViGgG~va~~ka~~Ll~~GA~VtVvap   44 (150)
T d1kyqa1           9 HQLKDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSP   44 (150)
T ss_dssp             ECCTTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEE
T ss_pred             eeeCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeC
Confidence            357899999999999999999999999999999954

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=96.91  E-value=0.0013  Score=62.34  Aligned_cols=68  Identities=21%  Similarity=0.341  Sum_probs=50.4

Q ss_pred             cccCcEEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCcee-----eCHH---HH-------hcCCcEEE
Q psy4626          74 MFGGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV-----VKLN---EV-------IRTVDIVV  137 (542)
Q Consensus        74 ~l~GktVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v-----~~l~---e~-------l~~aDvVi  137 (542)
                      .+.||+++|.|. +-||+.+|+.|...|++|+++++++.....+...+...     .+.+   ++       +...|++|
T Consensus         2 ~l~GK~alITGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~iDiLV   81 (248)
T d2d1ya1           2 LFAGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEGKEVAEAIGGAFFQVDLEDERERVRFVEEAAYALGRVDVLV   81 (248)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTHHHHHHHHTCEEEECCTTCHHHHHHHHHHHHHHHSCCCEEE
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHHHHhcCCCCeEE
Confidence            478999999997 56999999999999999999999887654443333332     2221   11       25799999


Q ss_pred             EcCC
Q psy4626         138 TATG  141 (542)
Q Consensus       138 ~atG  141 (542)
                      .+.|
T Consensus        82 nnAG   85 (248)
T d2d1ya1          82 NNAA   85 (248)
T ss_dssp             ECCC
T ss_pred             EeCc
Confidence            9766

>d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.90  E-value=0.0019  Score=62.99  Aligned_cols=93  Identities=19%  Similarity=0.345  Sum_probs=60.1

Q ss_pred             ccccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEe-C----------CchhhhhhhcC-C----c--eeeCHHHHh-cCC
Q psy4626          73 VMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITE-I----------DPICALQACMD-G----F--SVVKLNEVI-RTV  133 (542)
Q Consensus        73 ~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d-~----------dp~r~~~A~~~-G----~--~v~~l~e~l-~~a  133 (542)
                      ..+.|+||+|-|+|++|..+|+.|...|++|+.+. .          |...+...... |    +  ...+.++++ ..|
T Consensus        32 ~~L~gktvaIqGfGnVG~~~A~~L~e~Gakvv~vsD~~G~i~~~~Gld~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (293)
T d1hwxa1          32 PGFGDKTFAVQGFGNVGLHSMRYLHRFGAKCVAVGESDGSIWNPDGIDPKELEDFKLQHGTILGFPKAKIYEGSILEVDC  111 (293)
T ss_dssp             SSSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEEETTEEECCTTCCCHHHHHHHHHTTSSSTTCTTSCBCCSCGGGCCC
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEccchhhccccccchHHHHHHHHHcCCeecccccccCCcccccCCc
Confidence            35789999999999999999999999999988764 1          22222111110 1    0  012223444 589


Q ss_pred             cEEEEcCCCcccCCHHHHhccCCCeEEEeccCCC
Q psy4626         134 DIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSN  167 (542)
Q Consensus       134 DvVi~atG~~~lI~~e~l~~mk~GailvnvG~g~  167 (542)
                      ||++-|. ..+.|+.+..+.++-. +|+-.+-++
T Consensus       112 DIliPaA-~~~~I~~~~a~~l~ak-~I~EgAN~P  143 (293)
T d1hwxa1         112 DILIPAA-SEKQLTKSNAPRVKAK-IIAEGANGP  143 (293)
T ss_dssp             SEEEECS-SSSCBCTTTGGGCCCS-EEECCSSSC
T ss_pred             cEEeecc-ccccccHHHHHHHhhC-EEeccCCCC
Confidence            9999985 4468887778877544 444333333

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=96.89  E-value=0.00096  Score=58.64  Aligned_cols=69  Identities=20%  Similarity=0.222  Sum_probs=47.9

Q ss_pred             cCcEEEEEcCChhHHHHHHHHHhCC--CEEEEEeCCchhhh-hhh-------cCCce--eeCHHHHhcCCcEEEEcCCCc
Q psy4626          76 GGKQVVLCGYGEVGKGCCQSLKGLG--CVIYITEIDPICAL-QAC-------MDGFS--VVKLNEVIRTVDIVVTATGNK  143 (542)
Q Consensus        76 ~GktVvViG~G~IG~~vA~~l~~~G--a~Viv~d~dp~r~~-~A~-------~~G~~--v~~l~e~l~~aDvVi~atG~~  143 (542)
                      ..++|+|+|+|.+|..+|..|...|  -++..+|+++.++. ++.       ..+..  ...-.+.+++||+|+.+.|.+
T Consensus         4 ~~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~~~~~g~a~Dl~~a~~~~~~~~~~~~d~~~~~~adivvitag~~   83 (146)
T d1ez4a1           4 NHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSGEYSDCKDADLVVITAGAP   83 (146)
T ss_dssp             TBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEECCGGGGTTCSEEEECCCC-
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeecccchhHHHHHHHhccccccCCceEeeccHHHhccccEEEEecccc
Confidence            4569999999999999999998777  39999999986542 111       11111  111224578999999988864


Q ss_pred             c
Q psy4626         144 N  144 (542)
Q Consensus       144 ~  144 (542)
                      .
T Consensus        84 ~   84 (146)
T d1ez4a1          84 Q   84 (146)
T ss_dssp             -
T ss_pred             c
Confidence            3

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=96.88  E-value=0.0016  Score=56.62  Aligned_cols=64  Identities=17%  Similarity=0.138  Sum_probs=47.7

Q ss_pred             EEEEEcCChhHHHHHHHHHhCCC--EEEEEeCCchhhh-hhhc--C-----C--cee--eCHHHHhcCCcEEEEcCCC
Q psy4626          79 QVVLCGYGEVGKGCCQSLKGLGC--VIYITEIDPICAL-QACM--D-----G--FSV--VKLNEVIRTVDIVVTATGN  142 (542)
Q Consensus        79 tVvViG~G~IG~~vA~~l~~~Ga--~Viv~d~dp~r~~-~A~~--~-----G--~~v--~~l~e~l~~aDvVi~atG~  142 (542)
                      +|+|+|+|.+|..+|..+...|.  ++..+|+++.++. ++..  .     .  ..+  .+..+.++++|+|+.+.|.
T Consensus         2 KI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~dadvvvitag~   79 (142)
T d1guza1           2 KITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSNDYADTANSDIVIITAGL   79 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESCGGGGTTCSEEEECCSC
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCceEEEeccccccchhhhhhhhcccchhcccceEEecCCHHHhcCCeEEEEEEec
Confidence            69999999999999999998884  9999999987643 1111  1     1  111  2345678999999998874

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=96.82  E-value=0.0013  Score=57.67  Aligned_cols=66  Identities=17%  Similarity=0.248  Sum_probs=47.8

Q ss_pred             cEEEEEcCChhHHHHHHHHHhCCC--EEEEEeCCchhhh-hhh-------cCCce---eeCHHHHhcCCcEEEEcCCCc
Q psy4626          78 KQVVLCGYGEVGKGCCQSLKGLGC--VIYITEIDPICAL-QAC-------MDGFS---VVKLNEVIRTVDIVVTATGNK  143 (542)
Q Consensus        78 ktVvViG~G~IG~~vA~~l~~~Ga--~Viv~d~dp~r~~-~A~-------~~G~~---v~~l~e~l~~aDvVi~atG~~  143 (542)
                      |+|.|+|+|.||..+|..+...|.  ++..+|+++.++. ++.       .....   .....+.+++||+||.+.|.+
T Consensus         2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~~~Dl~~a~~~~~~~~~~~~~d~~~l~~adiVVitaG~~   80 (146)
T d1hyha1           2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVINDWAALADADVVISTLGNI   80 (146)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESCGGGGTTCSEEEECCSCG
T ss_pred             CeEEEECcCHHHHHHHHHHHhcCCCceEEEEecccchhhhHHHhhhccccccCCccceeccCHHHhccccEEEEecccc
Confidence            789999999999999998887774  8999999987642 111       11111   112235689999999988753

>d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Clostridium symbiosum [TaxId: 1512]

Probab=96.75  E-value=0.0015  Score=62.67  Aligned_cols=93  Identities=24%  Similarity=0.281  Sum_probs=62.3

Q ss_pred             hhcCccccCcEEEEEcCChhHHHHHHHHHhCCCEEEEE-eCC----------chhhhh----------------hhcCCc
Q psy4626          69 RSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYIT-EID----------PICALQ----------------ACMDGF  121 (542)
Q Consensus        69 r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~-d~d----------p~r~~~----------------A~~~G~  121 (542)
                      +..+..+.|+||+|-|+|++|..+|+.|...|++|+.+ |.+          ...+..                +...+.
T Consensus        28 ~~~~~~l~g~~v~IQGfGnVG~~~a~~L~e~GakvvavsD~~G~i~~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~~  107 (255)
T d1bgva1          28 KHENDTLVGKTVALAGFGNVAWGAAKKLAELGAKAVTLSGPDGYIYDPEGITTEEKINYMLEMRASGRNKVQDYADKFGV  107 (255)
T ss_dssp             HHTTCCSTTCEEEECCSSHHHHHHHHHHHHHTCEEEEEEETTEEEECTTCSCSHHHHHHHHHHHHHCCCCTHHHHHHHTC
T ss_pred             HhCCCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCceEecCCCCCHHHHHHHHHHHhhhcCcchhhhhhhcCc
Confidence            33456789999999999999999999999999998764 421          111111                001122


Q ss_pred             eeeCHHHHh-cCCcEEEEcCCCcccCCHHHHhccC-CCeEEEe
Q psy4626         122 SVVKLNEVI-RTVDIVVTATGNKNVVTREHMDKMK-NGCVVCN  162 (542)
Q Consensus       122 ~v~~l~e~l-~~aDvVi~atG~~~lI~~e~l~~mk-~Gailvn  162 (542)
                      ...+.++.+ ..|||++-|. ..+.|+.+....++ +++.+|-
T Consensus       108 ~~~~~~~~~~~~~DiliPcA-~~~~I~~~~a~~l~a~~ck~I~  149 (255)
T d1bgva1         108 QFFPGEKPWGQKVDIIMPCA-TQNDVDLEQAKKIVANNVKYYI  149 (255)
T ss_dssp             EEEETCCGGGSCCSEEECCS-CTTCBCHHHHHHHHHTTCCEEE
T ss_pred             eeechhhcccccccEEeecc-ccccccHHHHHhhhhcCceEEe
Confidence            333444444 5899999875 44588888788785 4664443

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=96.69  E-value=0.0015  Score=56.91  Aligned_cols=65  Identities=20%  Similarity=0.227  Sum_probs=45.9

Q ss_pred             EEEEEcCChhHHHHHHHHHhCC--CEEEEEeCCchhhh-hhhc-------CCc-e-eeCHHHHhcCCcEEEEcCCCc
Q psy4626          79 QVVLCGYGEVGKGCCQSLKGLG--CVIYITEIDPICAL-QACM-------DGF-S-VVKLNEVIRTVDIVVTATGNK  143 (542)
Q Consensus        79 tVvViG~G~IG~~vA~~l~~~G--a~Viv~d~dp~r~~-~A~~-------~G~-~-v~~l~e~l~~aDvVi~atG~~  143 (542)
                      +|.|+|.|.+|..+|..+...|  -++..+|+++.++. ++..       ... . .....+.++++|+|+.+.|.+
T Consensus         2 KI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~~~Dl~~~~~~~~~~~~~~~~~~~~~~adivvitag~~   78 (140)
T d1a5za1           2 KIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAGDYADLKGSDVVIVAAGVP   78 (140)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEECCGGGGTTCSEEEECCCCC
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCCEEEEEecccccccchhccccccccccccccccCCcHHHhcCCCEEEEecccc
Confidence            7899999999999998887666  48999999986643 1111       110 1 112345689999999988743

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=96.64  E-value=0.0018  Score=56.42  Aligned_cols=66  Identities=23%  Similarity=0.265  Sum_probs=46.7

Q ss_pred             cEEEEEcCChhHHHHHHHHHhCCC-EEEEEeCCchhhhh-hhc--C-----Cce--e--eCHHHHhcCCcEEEEcCCCc
Q psy4626          78 KQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQ-ACM--D-----GFS--V--VKLNEVIRTVDIVVTATGNK  143 (542)
Q Consensus        78 ktVvViG~G~IG~~vA~~l~~~Ga-~Viv~d~dp~r~~~-A~~--~-----G~~--v--~~l~e~l~~aDvVi~atG~~  143 (542)
                      ++|.|+|+|.+|..+|..+...+. ++..+|+++.++.. +..  .     +..  +  .+-.+.++++|+||.+.|.+
T Consensus         2 ~KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~d~~~~~~advvvitag~~   80 (142)
T d1uxja1           2 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNYADTANSDVIVVTSGAP   80 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCGGGGTTCSEEEECCSCC
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCcceEEEEeeccccchhHHHHhhccccccCCCCEEEecCcHHHhcCCCEEEEeeecc
Confidence            589999999999999988877775 99999998876432 211  1     111  1  12234578999999998753

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=96.63  E-value=0.0024  Score=56.99  Aligned_cols=70  Identities=20%  Similarity=0.285  Sum_probs=50.6

Q ss_pred             cccCcEEEEEcCChhHHHHHHHHHhCCC--EEEEEeCCchhhh-hhhc--CC-----ce-e--eCHHHHhcCCcEEEEcC
Q psy4626          74 MFGGKQVVLCGYGEVGKGCCQSLKGLGC--VIYITEIDPICAL-QACM--DG-----FS-V--VKLNEVIRTVDIVVTAT  140 (542)
Q Consensus        74 ~l~GktVvViG~G~IG~~vA~~l~~~Ga--~Viv~d~dp~r~~-~A~~--~G-----~~-v--~~l~e~l~~aDvVi~at  140 (542)
                      .+...+|+|+|+|.+|..+|..+...|.  ++..+|+++.++. ++..  +.     .. .  ....+.++++|+|+.+.
T Consensus        17 ~~~~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~~~~a~g~alDl~h~~~~~~~~~~~~~~d~~~~~~adiVVitA   96 (160)
T d1i0za1          17 TVPNNKITVVGVGQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFLQTPKIVADKDYSVTANSKIVVVTA   96 (160)
T ss_dssp             CCCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCCCSEEEECSSGGGGTTCSEEEECC
T ss_pred             cCCCCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccchhHHHHHHHhccccccCCCeEEeccchhhcccccEEEEec
Confidence            3567899999999999999999999886  8999999876642 2211  11     11 1  11235678999999988


Q ss_pred             CCc
Q psy4626         141 GNK  143 (542)
Q Consensus       141 G~~  143 (542)
                      |.+
T Consensus        97 g~~   99 (160)
T d1i0za1          97 GVR   99 (160)
T ss_dssp             SCC
T ss_pred             CCc
Confidence            743

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=96.62  E-value=0.0024  Score=55.55  Aligned_cols=64  Identities=17%  Similarity=0.216  Sum_probs=49.3

Q ss_pred             EEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhh----hhhhcCCceeeC--------HHHH-hcCCcEEEEcCCC
Q psy4626          79 QVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICA----LQACMDGFSVVK--------LNEV-IRTVDIVVTATGN  142 (542)
Q Consensus        79 tVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~----~~A~~~G~~v~~--------l~e~-l~~aDvVi~atG~  142 (542)
                      .++|+|+|.+|+.+++.|...|.+|+++|.||.+.    .+....|+.++.        ++++ +..||.+|.++++
T Consensus         5 HiII~G~g~~g~~l~~~L~~~~~~v~vId~d~~~~~~~~~~~~~~~~~vi~Gd~~d~~~L~~a~i~~a~~vi~~~~~   81 (153)
T d1id1a_           5 HFIVCGHSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAILALSDN   81 (153)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTCSEEEECSSC
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCEEEEeccchhHHHHHHHhhcCCcEEEEccCcchHHHHHhccccCCEEEEcccc
Confidence            59999999999999999999999999999998542    233445766542        1222 4789999998865

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.58  E-value=0.0018  Score=60.93  Aligned_cols=68  Identities=18%  Similarity=0.203  Sum_probs=49.6

Q ss_pred             cccCcEEEEEcCC-hhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHH---HH-------hcCCcEEEEcCC
Q psy4626          74 MFGGKQVVLCGYG-EVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLN---EV-------IRTVDIVVTATG  141 (542)
Q Consensus        74 ~l~GktVvViG~G-~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~---e~-------l~~aDvVi~atG  141 (542)
                      .+.||+++|.|.+ -||+.+|+.|...|++|++++++............++.+.+   ++       ....|++|.+.|
T Consensus         4 sl~gK~~lITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDiLVnnAG   82 (237)
T d1uzma1           4 PFVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAPKGLFGVEVDVTDSDAVDRAFTAVEEHQGPVEVLVSNAG   82 (237)
T ss_dssp             CCCCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCCCTTSEEEECCTTCHHHHHHHHHHHHHHHSSCSEEEEECS
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcchhcCceEEEEecCCHHHHHHHHHHHHHhcCCceEEEeeec
Confidence            5789999999996 59999999999999999999988765443322112233322   11       247899999765

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.53  E-value=0.0064  Score=53.03  Aligned_cols=64  Identities=20%  Similarity=0.268  Sum_probs=46.9

Q ss_pred             cEEEEEcC-ChhHHHHHHHHHhCCC--EEEEEeCCchhhhhhhc--CC--ce----ee---CHHHHhcCCcEEEEcCCC
Q psy4626          78 KQVVLCGY-GEVGKGCCQSLKGLGC--VIYITEIDPICALQACM--DG--FS----VV---KLNEVIRTVDIVVTATGN  142 (542)
Q Consensus        78 ktVvViG~-G~IG~~vA~~l~~~Ga--~Viv~d~dp~r~~~A~~--~G--~~----v~---~l~e~l~~aDvVi~atG~  142 (542)
                      .+|+|+|+ |.+|..+|..+...|.  ++..+|+++.+.. +..  +.  +.    .+   +..+.+++||+||.+.|.
T Consensus         1 sKv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~~~~~-a~Dl~~~~~~~~~~~~~~~~~~~~~~~~aDivVitag~   78 (144)
T d1mlda1           1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGV-AADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGV   78 (144)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHH-HHHHTTSSSSCEEEEEESGGGHHHHHTTCSEEEECCSC
T ss_pred             CeEEEECCCChHHHHHHHHHHhCCccceEEEEeccccchh-hHHHhhhhhhcCCCeEEcCCChHHHhCCCCEEEECCCc
Confidence            37999995 9999999999998886  8999999875532 211  11  11    11   235678999999998774

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=96.52  E-value=0.0054  Score=53.47  Aligned_cols=66  Identities=23%  Similarity=0.313  Sum_probs=47.0

Q ss_pred             cEEEEEcCChhHHHHHHHHHhCCC--EEEEEeCCchhhh-hhh--cCC-----c-ee--eCHHHHhcCCcEEEEcCCCc
Q psy4626          78 KQVVLCGYGEVGKGCCQSLKGLGC--VIYITEIDPICAL-QAC--MDG-----F-SV--VKLNEVIRTVDIVVTATGNK  143 (542)
Q Consensus        78 ktVvViG~G~IG~~vA~~l~~~Ga--~Viv~d~dp~r~~-~A~--~~G-----~-~v--~~l~e~l~~aDvVi~atG~~  143 (542)
                      .+|+|+|.|.+|..+|..+...|.  ++..+|+++.++. ++.  .+.     . .+  .+-.+.++++|+|+.+.|.+
T Consensus         2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~~~~~g~a~Dl~~a~~~~~~~~i~~~~~~~~~~daDvVVitaG~~   80 (143)
T d1llda1           2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDDPEICRDADMVVITAGPR   80 (143)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEESCGGGGTTCSEEEECCCCC
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccccchhHHHHHHhccccCCCceeecCCCHHHhhCCcEEEEecccc
Confidence            379999999999999999887776  8999999986642 111  111     1 11  12235688999999998853

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=96.51  E-value=0.0023  Score=56.96  Aligned_cols=64  Identities=20%  Similarity=0.289  Sum_probs=49.0

Q ss_pred             cCcEEEEEcCChhHHHHHHHHHhCCC-EEEEEeCCchhhhh-hhcCCceeeCHHHHhcCCcEEEEcC
Q psy4626          76 GGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQ-ACMDGFSVVKLNEVIRTVDIVVTAT  140 (542)
Q Consensus        76 ~GktVvViG~G~IG~~vA~~l~~~Ga-~Viv~d~dp~r~~~-A~~~G~~v~~l~e~l~~aDvVi~at  140 (542)
                      .+++|+|+|+|-.++.++..|+..|+ +|.++.+++.+... +...+....+- .....+|+||.||
T Consensus        16 ~~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~~~ka~~L~~~~~~~~~~~-~~~~~~DliINaT   81 (167)
T d1npya1          16 KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYGYAYINS-LENQQADILVNVT   81 (167)
T ss_dssp             TTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHHTCEEESC-CTTCCCSEEEECS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEecccHHHHHHHHHhhhhhhhhc-ccccchhhheecc
Confidence            68999999999999999999999998 89999999887653 22334333221 1135789999987

>d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=96.49  E-value=0.0038  Score=56.22  Aligned_cols=88  Identities=26%  Similarity=0.292  Sum_probs=56.4

Q ss_pred             cEEEEEcCChhHHHHHHHHHhCC-CEE-EEEeCCchhh-hhhhcCCceee-------------------CHHHHhcCCcE
Q psy4626          78 KQVVLCGYGEVGKGCCQSLKGLG-CVI-YITEIDPICA-LQACMDGFSVV-------------------KLNEVIRTVDI  135 (542)
Q Consensus        78 ktVvViG~G~IG~~vA~~l~~~G-a~V-iv~d~dp~r~-~~A~~~G~~v~-------------------~l~e~l~~aDv  135 (542)
                      .+|+|.|+|+||+.+++.+.... .+| .+.|++|... ..+...++...                   ++.+++.++|+
T Consensus         3 irIaINGfGRIGR~v~Ral~~~~dieiVaINd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vDv   82 (172)
T d2czca2           3 VKVGVNGYGTIGKRVAYAVTKQDDMELIGITKTKPDFEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDLLEKVDI   82 (172)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCTTEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHHTCCCSCBHHHHHTTCSE
T ss_pred             EEEEEECCCHHHHHHHHHHHhCCCceEEEEecCCChHHHHHhhhcCceeecccccceeeecccCccccchhhhhhccCCE
Confidence            37999999999999999997655 554 4567776432 22344444321                   12334568999


Q ss_pred             EEEcCCCcccCCHHHHhccCCCeEEEeccCC
Q psy4626         136 VVTATGNKNVVTREHMDKMKNGCVVCNMGHS  166 (542)
Q Consensus       136 Vi~atG~~~lI~~e~l~~mk~GailvnvG~g  166 (542)
                      |++|||..... +..-..++.|+..+-.|..
T Consensus        83 ViEcTG~f~~~-~~~~~hl~~G~k~Vi~s~~  112 (172)
T d2czca2          83 IVDATPGGIGA-KNKPLYEKAGVKAIFQGGE  112 (172)
T ss_dssp             EEECCSTTHHH-HHHHHHHHHTCEEEECTTS
T ss_pred             EEECCCCCCCH-HHHHHHHHcCCCEEEECCC
Confidence            99999863322 1223345678877776643

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=96.49  E-value=0.0045  Score=58.71  Aligned_cols=40  Identities=23%  Similarity=0.391  Sum_probs=36.3

Q ss_pred             ccCcEEEEEcCC-hhHHHHHHHHHhCCCEEEEEeCCchhhh
Q psy4626          75 FGGKQVVLCGYG-EVGKGCCQSLKGLGCVIYITEIDPICAL  114 (542)
Q Consensus        75 l~GktVvViG~G-~IG~~vA~~l~~~Ga~Viv~d~dp~r~~  114 (542)
                      +.||+++|.|.+ -||+.+|+.|...|++|+++++++.++.
T Consensus         3 L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~   43 (260)
T d1zema1           3 FNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALE   43 (260)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHH
Confidence            689999999995 5999999999999999999999987654

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=96.48  E-value=0.0023  Score=57.86  Aligned_cols=63  Identities=22%  Similarity=0.309  Sum_probs=46.0

Q ss_pred             EEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce--------------------eeCHHHHhcCCcEEEE
Q psy4626          79 QVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS--------------------VVKLNEVIRTVDIVVT  138 (542)
Q Consensus        79 tVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~--------------------v~~l~e~l~~aDvVi~  138 (542)
                      +|+|+|.|.+|+.+|..+ +.|.+|+.+|+|+.+.... ..|..                    ..+......++|+++.
T Consensus         2 kI~ViGlG~vGl~~a~~~-a~g~~V~g~Din~~~v~~l-~~g~~p~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~ii~v   79 (196)
T d1dlja2           2 KIAVAGSGYVGLSLGVLL-SLQNEVTIVDILPSKVDKI-NNGLSPIQDEYIEYYLKSKQLSIKATLDSKAAYKEAELVII   79 (196)
T ss_dssp             EEEEECCSHHHHHHHHHH-TTTSEEEEECSCHHHHHHH-HTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHHHCSEEEE
T ss_pred             EEEEECCChhHHHHHHHH-HCCCcEEEEECCHHHHHHH-hhcccccchhhHHHHhhhhhhhhhccchhhhhhhccccccc
Confidence            699999999999999877 5799999999999765432 22221                    1122344578999999


Q ss_pred             cCCCc
Q psy4626         139 ATGNK  143 (542)
Q Consensus       139 atG~~  143 (542)
                      |++++
T Consensus        80 ~vpt~   84 (196)
T d1dlja2          80 ATPTN   84 (196)
T ss_dssp             CCCCC
T ss_pred             cCCcc
Confidence            88654

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=96.47  E-value=0.0012  Score=60.35  Aligned_cols=34  Identities=26%  Similarity=0.311  Sum_probs=32.1

Q ss_pred             CcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCc
Q psy4626          77 GKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDP  110 (542)
Q Consensus        77 GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp  110 (542)
                      ||+|+|||.|+-|+.+|..|+..|.+|+++|.++
T Consensus         1 ~KkV~IIGaG~aGL~aA~~La~~G~~V~vlE~~~   34 (373)
T d1seza1           1 AKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEG   34 (373)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTSCEEEEECSSS
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            7999999999999999999999999999999655

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=96.45  E-value=0.0023  Score=56.57  Aligned_cols=70  Identities=13%  Similarity=0.049  Sum_probs=50.8

Q ss_pred             ccCcEEEEEcCChhHHHHHHHHHhCCC-EEEEEeCCchhhh-hhhc-------CCce-----eeCHHHHhcCCcEEEEcC
Q psy4626          75 FGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICAL-QACM-------DGFS-----VVKLNEVIRTVDIVVTAT  140 (542)
Q Consensus        75 l~GktVvViG~G~IG~~vA~~l~~~Ga-~Viv~d~dp~r~~-~A~~-------~G~~-----v~~l~e~l~~aDvVi~at  140 (542)
                      ..-++|+|+|+|.+|..+|..+...|. ++.++|+++.++. ++..       .+..     ..+.+++++++|+|+.+.
T Consensus         5 ~k~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~~adiVvita   84 (154)
T d1pzga1           5 QRRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALTGADCVIVTA   84 (154)
T ss_dssp             SCCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHTTCSEEEECC
T ss_pred             cCCCcEEEECCCHHHHHHHHHHHhCCCceEEEEEeccccchhHHHHHhhhccccCCeeEEeccCchhhhhcCCCeEEEec
Confidence            356799999999999999988887775 9999999986543 1111       1111     123457789999999998


Q ss_pred             CCcc
Q psy4626         141 GNKN  144 (542)
Q Consensus       141 G~~~  144 (542)
                      |.+.
T Consensus        85 g~~~   88 (154)
T d1pzga1          85 GLTK   88 (154)
T ss_dssp             SCSS
T ss_pred             cccc
Confidence            7643

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=96.43  E-value=0.0043  Score=58.76  Aligned_cols=68  Identities=22%  Similarity=0.287  Sum_probs=49.5

Q ss_pred             cccCcEEEEEcCC-hhHHHHHHHHHhCCCEEEEEeCCchhhhhhh-cCCce-------eeCHH---H-------HhcCCc
Q psy4626          74 MFGGKQVVLCGYG-EVGKGCCQSLKGLGCVIYITEIDPICALQAC-MDGFS-------VVKLN---E-------VIRTVD  134 (542)
Q Consensus        74 ~l~GktVvViG~G-~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~-~~G~~-------v~~l~---e-------~l~~aD  134 (542)
                      .+.||+++|.|.+ -||+.+|+.|...|++|+++++++.++.+.. +.+..       +.+.+   +       .+...|
T Consensus         3 rL~gK~alITGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~iD   82 (253)
T d1hxha_           3 RLQGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAELGERSMFVRHDVSSEADWTLVMAAVQRRLGTLN   82 (253)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCTTEEEECCCTTCHHHHHHHHHHHHHHHCSCC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCCCeEEEEeecCCHHHHHHHHHHHHHHhCCCC
Confidence            4789999999975 5999999999999999999999987654322 22211       11221   1       125789


Q ss_pred             EEEEcCC
Q psy4626         135 IVVTATG  141 (542)
Q Consensus       135 vVi~atG  141 (542)
                      ++|.+.|
T Consensus        83 ilVnnAG   89 (253)
T d1hxha_          83 VLVNNAG   89 (253)
T ss_dssp             EEEECCC
T ss_pred             eEEeccc
Confidence            9999876

>d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=96.41  E-value=0.0026  Score=57.69  Aligned_cols=87  Identities=20%  Similarity=0.205  Sum_probs=53.3

Q ss_pred             EEEEEcCChhHHHHHHHHHhCC-CEEEE-EeCCchhhhhh-hcCCcee------------------eCHHHHhcCCcEEE
Q psy4626          79 QVVLCGYGEVGKGCCQSLKGLG-CVIYI-TEIDPICALQA-CMDGFSV------------------VKLNEVIRTVDIVV  137 (542)
Q Consensus        79 tVvViG~G~IG~~vA~~l~~~G-a~Viv-~d~dp~r~~~A-~~~G~~v------------------~~l~e~l~~aDvVi  137 (542)
                      +|+|.|+|.||+.+++.+.... .+|+. .|++|...... ...+...                  -++.+++.++|+|+
T Consensus         3 KVaINGfGRIGR~v~Ral~~~~dievVaInd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~g~~~~~~~~vDiVi   82 (178)
T d1b7go1           3 NVAVNGYGTIGKRVADAIIKQPDMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEESGIPVAGTVEDLIKTSDIVV   82 (178)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCTTEEEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHHHTTTCCCCCCHHHHHHHCSEEE
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCEEEEEECCCCcHHHHHhcccCcceeccCccceeccccceecCCchhhhhhcCCEEE
Confidence            6999999999999999998764 56665 56666433221 1122111                  12344557899999


Q ss_pred             EcCCCcccCCHHHHhccCCCeEEEeccCC
Q psy4626         138 TATGNKNVVTREHMDKMKNGCVVCNMGHS  166 (542)
Q Consensus       138 ~atG~~~lI~~e~l~~mk~GailvnvG~g  166 (542)
                      +|||..... ...-..++.|..++-.|..
T Consensus        83 ecTG~f~~~-e~a~~hl~~G~KvIi~~~~  110 (178)
T d1b7go1          83 DTTPNGVGA-QYKPIYLQLQRNAIFQGGE  110 (178)
T ss_dssp             ECCSTTHHH-HHHHHHHHTTCEEEECTTS
T ss_pred             ECCCCcCCH-HHHHHHHHcCCEEEEECCC
Confidence            999863211 1222334667666665544

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=96.39  E-value=0.0072  Score=57.05  Aligned_cols=41  Identities=22%  Similarity=0.344  Sum_probs=36.7

Q ss_pred             cccCcEEEEEcCC-hhHHHHHHHHHhCCCEEEEEeCCchhhh
Q psy4626          74 MFGGKQVVLCGYG-EVGKGCCQSLKGLGCVIYITEIDPICAL  114 (542)
Q Consensus        74 ~l~GktVvViG~G-~IG~~vA~~l~~~Ga~Viv~d~dp~r~~  114 (542)
                      .+.||+++|.|.+ -||+.+|+.|...|++|+++++++.+..
T Consensus         2 ~l~gK~~lITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~   43 (251)
T d1vl8a_           2 DLRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEAS   43 (251)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHH
Confidence            4789999999996 5999999999999999999999987654

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=96.37  E-value=0.0026  Score=55.46  Aligned_cols=66  Identities=17%  Similarity=0.240  Sum_probs=44.2

Q ss_pred             cEEEEEcCChhHHHHHHHHHhCCC--EEEEEeCCchhhh-hhhc--CCce-----e-e-CHHHHhcCCcEEEEcCCCc
Q psy4626          78 KQVVLCGYGEVGKGCCQSLKGLGC--VIYITEIDPICAL-QACM--DGFS-----V-V-KLNEVIRTVDIVVTATGNK  143 (542)
Q Consensus        78 ktVvViG~G~IG~~vA~~l~~~Ga--~Viv~d~dp~r~~-~A~~--~G~~-----v-~-~l~e~l~~aDvVi~atG~~  143 (542)
                      ++|+|+|.|.+|..+|..+...|.  ++..+|+++.++. ++..  ++..     . . ...+.++++|+|+.+.|.+
T Consensus         2 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~~~adivvitag~~   79 (142)
T d1y6ja1           2 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGDYSDVKDCDVIVVTAGAN   79 (142)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC--CGGGGTTCSEEEECCCC-
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccCCccceeeeeeccCcccCCCeeEeeCcHHHhCCCceEEEecccc
Confidence            479999999999999999988776  8999999887632 2211  1111     1 1 1235678999999987743

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=96.35  E-value=0.0072  Score=57.31  Aligned_cols=68  Identities=19%  Similarity=0.251  Sum_probs=50.0

Q ss_pred             cccCcEEEEEcCC-hhHHHHHHHHHhCCCEEEEEeCCchhhhhhh-cCCce-------eeCHH---HH-------hcCCc
Q psy4626          74 MFGGKQVVLCGYG-EVGKGCCQSLKGLGCVIYITEIDPICALQAC-MDGFS-------VVKLN---EV-------IRTVD  134 (542)
Q Consensus        74 ~l~GktVvViG~G-~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~-~~G~~-------v~~l~---e~-------l~~aD  134 (542)
                      .+.||+++|.|.+ -||+.+|+.|...|++|+++++++.++.+.. +.+..       +.+.+   ++       +...|
T Consensus         2 dL~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD   81 (254)
T d1hdca_           2 DLSGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATARELGDAARYQHLDVTIEEDWQRVVAYAREEFGSVD   81 (254)
T ss_dssp             CCCCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTGGGEEEEECCTTCHHHHHHHHHHHHHHHSCCC
T ss_pred             CCCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCCceEEEEcccCCHHHHHHHHHHHHHHcCCcc
Confidence            4789999999996 5999999999999999999999987765432 22311       11221   11       25789


Q ss_pred             EEEEcCC
Q psy4626         135 IVVTATG  141 (542)
Q Consensus       135 vVi~atG  141 (542)
                      ++|.+.|
T Consensus        82 ilVnnAg   88 (254)
T d1hdca_          82 GLVNNAG   88 (254)
T ss_dssp             EEEECCC
T ss_pred             EEEecCc
Confidence            9999765

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.29  E-value=0.0078  Score=52.28  Aligned_cols=64  Identities=17%  Similarity=0.126  Sum_probs=46.6

Q ss_pred             EEEEEcCChhHHHHHHHHHhCCC--EEEEEeCCchhhh-hhh------c-CCc--ee--eCHHHHhcCCcEEEEcCCC
Q psy4626          79 QVVLCGYGEVGKGCCQSLKGLGC--VIYITEIDPICAL-QAC------M-DGF--SV--VKLNEVIRTVDIVVTATGN  142 (542)
Q Consensus        79 tVvViG~G~IG~~vA~~l~~~Ga--~Viv~d~dp~r~~-~A~------~-~G~--~v--~~l~e~l~~aDvVi~atG~  142 (542)
                      +|+|+|+|.+|..+|..+...|.  ++..+|+++.++. ++.      . ...  .+  ..-.+.++++|+|+.+.|.
T Consensus         2 KI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~alDl~~~~~~~~~~~~i~~~~d~~~~~~adiVvitag~   79 (142)
T d1ojua1           2 KLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGADYSLLKGSEIIVVTAGL   79 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESCGGGGTTCSEEEECCCC
T ss_pred             EEEEECcCHHHHHHHHHHHhcCcCceEEEEecccchhhHHHHHHhhhccccCCCCccccCCCHHHhccccEEEEeccc
Confidence            79999999999999999987775  8999999987642 111      0 111  11  1123678999999998874

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.28  E-value=0.0041  Score=57.99  Aligned_cols=37  Identities=16%  Similarity=0.337  Sum_probs=32.9

Q ss_pred             cCcEEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCchh
Q psy4626          76 GGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPIC  112 (542)
Q Consensus        76 ~GktVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp~r  112 (542)
                      .||+|+|.|. |-||+.+|+.+...|++|+++|+++..
T Consensus         1 egK~vlITGas~GIG~a~a~~l~~~G~~V~~~~~~~~~   38 (236)
T d1dhra_           1 EARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVENE   38 (236)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSCCT
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCccc
Confidence            4899999999 569999999999999999999986643

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.25  E-value=0.0013  Score=58.35  Aligned_cols=36  Identities=28%  Similarity=0.342  Sum_probs=32.8

Q ss_pred             cCcEEEEEcCChhHHHHHHHHHhCCC-EEEEEeCCch
Q psy4626          76 GGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPI  111 (542)
Q Consensus        76 ~GktVvViG~G~IG~~vA~~l~~~Ga-~Viv~d~dp~  111 (542)
                      .+|+|+|||.|+.|..+|..|+.+|+ .|+++|..+.
T Consensus         3 ~~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~   39 (196)
T d1gtea4           3 YSAKIALLGAGPASISCASFLARLGYSDITIFEKQEY   39 (196)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSS
T ss_pred             CCCEEEEECChHHHHHHHHHHHHCCCCeEEEEEecCc
Confidence            47899999999999999999999999 5999998764

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=96.24  E-value=0.0023  Score=58.37  Aligned_cols=87  Identities=11%  Similarity=0.141  Sum_probs=61.8

Q ss_pred             cEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhc--------CCce-------eeCHHHHhcCCcEEEEcCCC
Q psy4626          78 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACM--------DGFS-------VVKLNEVIRTVDIVVTATGN  142 (542)
Q Consensus        78 ktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~--------~G~~-------v~~l~e~l~~aDvVi~atG~  142 (542)
                      ++++|+|+|..|..+|..|...|-+|.+|++++.....-..        .++.       ..+++++++++|+|+.++.+
T Consensus         8 ~KI~ViGaG~wGtAlA~~La~~g~~V~l~~r~~~~~~~i~~~~~n~~yl~~~~l~~~i~~t~~l~~a~~~ad~iiiavPs   87 (189)
T d1n1ea2           8 NKAVVFGSGAFGTALAMVLSKKCREVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAYNGAEIILFVIPT   87 (189)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTEEEEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHTTCSCEEECSCH
T ss_pred             ceEEEECCCHHHHHHHHHHHHcCCeEEEEEecHHHHHHHhhcccccccccccccccccccchhhhhccCCCCEEEEcCcH
Confidence            57999999999999999999999999999998865432111        1221       23578889999999999765


Q ss_pred             cccCCHHHHhcc---------CCCeEEEeccCC
Q psy4626         143 KNVVTREHMDKM---------KNGCVVCNMGHS  166 (542)
Q Consensus       143 ~~lI~~e~l~~m---------k~GailvnvG~g  166 (542)
                      ..+  ++.++.+         +++..++++.-|
T Consensus        88 ~~~--~~~~~~~~~~~~~~~~~~~~~ii~~tKG  118 (189)
T d1n1ea2          88 QFL--RGFFEKSGGNLIAYAKEKQVPVLVCTKG  118 (189)
T ss_dssp             HHH--HHHHHHHCHHHHHHHHHHTCCEEECCCS
T ss_pred             HHH--HHHHHHHHhhhhhhhccCCcEEEEEECC
Confidence            332  2344433         456667776654

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=96.15  E-value=0.0066  Score=57.03  Aligned_cols=41  Identities=22%  Similarity=0.324  Sum_probs=36.5

Q ss_pred             ccCcEEEEEcCC-hhHHHHHHHHHhCCCEEEEEeCCchhhhh
Q psy4626          75 FGGKQVVLCGYG-EVGKGCCQSLKGLGCVIYITEIDPICALQ  115 (542)
Q Consensus        75 l~GktVvViG~G-~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~  115 (542)
                      +.||+++|.|.+ -||+.+|+.|...|++|+++++++.++.+
T Consensus         2 l~gK~alITGas~GIG~a~a~~l~~~G~~Vv~~~r~~~~l~~   43 (243)
T d1q7ba_           2 FEGKIALVTGASRGIGRAIAETLAARGAKVIGTATSENGAQA   43 (243)
T ss_dssp             CTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence            679999999985 59999999999999999999999876543

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=96.08  E-value=0.014  Score=54.86  Aligned_cols=68  Identities=22%  Similarity=0.277  Sum_probs=48.9

Q ss_pred             cccCcEEEEEcCC-hhHHHHHHHHHhCCCEEEEEeCCchhhhh--hhcCCcee-------eCHH---H----H---hcCC
Q psy4626          74 MFGGKQVVLCGYG-EVGKGCCQSLKGLGCVIYITEIDPICALQ--ACMDGFSV-------VKLN---E----V---IRTV  133 (542)
Q Consensus        74 ~l~GktVvViG~G-~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~--A~~~G~~v-------~~l~---e----~---l~~a  133 (542)
                      .+.||+++|.|.+ -||+.+|+.|...|++|+++++++....+  ....|..+       .+.+   +    +   +...
T Consensus         2 rL~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~~g~~~~~~~~Dvs~~~~v~~~~~~~~~~~G~i   81 (247)
T d2ew8a1           2 RLKDKLAVITGGANGIGRAIAERFAVEGADIAIADLVPAPEAEAAIRNLGRRVLTVKCDVSQPGDVEAFGKQVISTFGRC   81 (247)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCchHHHHHHHHHcCCcEEEEEeeCCCHHHHHHHHHHHHHHcCCC
Confidence            3689999999995 59999999999999999999998754322  22334221       1221   1    1   2579


Q ss_pred             cEEEEcCC
Q psy4626         134 DIVVTATG  141 (542)
Q Consensus       134 DvVi~atG  141 (542)
                      |++|.+.|
T Consensus        82 DilVnnAG   89 (247)
T d2ew8a1          82 DILVNNAG   89 (247)
T ss_dssp             CEEEECCC
T ss_pred             CEEEECCC
Confidence            99999776

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.07  E-value=0.0059  Score=57.39  Aligned_cols=43  Identities=21%  Similarity=0.423  Sum_probs=38.1

Q ss_pred             ccccCcEEEEEcCC-hhHHHHHHHHHhCCCEEEEEeCCchhhhh
Q psy4626          73 VMFGGKQVVLCGYG-EVGKGCCQSLKGLGCVIYITEIDPICALQ  115 (542)
Q Consensus        73 ~~l~GktVvViG~G-~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~  115 (542)
                      ..+.||+++|.|.+ -||+.+|+.|...|++|+++++++.++.+
T Consensus         3 ~~L~GK~~lITGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~   46 (244)
T d1pr9a_           3 LFLAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDS   46 (244)
T ss_dssp             CCCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHH
Confidence            35799999999995 59999999999999999999999877654

>d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Methanothermus fervidus [TaxId: 2180]

Probab=96.04  E-value=0.0079  Score=53.96  Aligned_cols=88  Identities=20%  Similarity=0.328  Sum_probs=55.0

Q ss_pred             cEEEEEcCChhHHHHHHHHHhCC-CEEE-EEeCCchhh-hhhhcCCcee-e------------------CHHHHhcCCcE
Q psy4626          78 KQVVLCGYGEVGKGCCQSLKGLG-CVIY-ITEIDPICA-LQACMDGFSV-V------------------KLNEVIRTVDI  135 (542)
Q Consensus        78 ktVvViG~G~IG~~vA~~l~~~G-a~Vi-v~d~dp~r~-~~A~~~G~~v-~------------------~l~e~l~~aDv  135 (542)
                      ++|+|-|+|.||+.+++.+...+ .+|+ +.|++|.-. ..+...++.. .                  +..+++.++|+
T Consensus         2 ~~VgINGfGRIGR~v~R~l~~~~di~vvaInd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~vDv   81 (171)
T d1cf2o1           2 KAVAINGYGTVGKRVADAIAQQDDMKVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLFEKAGIEVAGTVDDMLDEADI   81 (171)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTSSSEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHHHHHHTCSE
T ss_pred             eEEEEEcCcHHHHHHHHHHHhCCCceEEEEecCCcHHHHHHHHhcCCceEecccccceeecccCcccCCChhHhhcCCCE
Confidence            47999999999999999987776 5555 457665322 2233333332 1                  12344579999


Q ss_pred             EEEcCCCcccCCHHHHhccCCCeEEEeccCC
Q psy4626         136 VVTATGNKNVVTREHMDKMKNGCVVCNMGHS  166 (542)
Q Consensus       136 Vi~atG~~~lI~~e~l~~mk~GailvnvG~g  166 (542)
                      |++|||.-... ...-..++.|+..+-.+..
T Consensus        82 ViEcTG~f~~~-~~~~~hl~~G~K~vi~~~~  111 (171)
T d1cf2o1          82 VIDCTPEGIGA-KNLKMYKEKGIKAIFQGGE  111 (171)
T ss_dssp             EEECCSTTHHH-HHHHHHHHTTCEEEECTTS
T ss_pred             EEEccCCCCCH-HHHHHHHHcCCCEEEECCC
Confidence            99999863221 1222345667777766543

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.04  E-value=0.0071  Score=54.17  Aligned_cols=85  Identities=15%  Similarity=0.212  Sum_probs=54.4

Q ss_pred             cEEEEEcCChhHHHHHHHHHhCCCEEEEEeCC--chhhhhhhcC------Cce--------eeCHHHHhcCCcEEEEcCC
Q psy4626          78 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEID--PICALQACMD------GFS--------VVKLNEVIRTVDIVVTATG  141 (542)
Q Consensus        78 ktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~d--p~r~~~A~~~------G~~--------v~~l~e~l~~aDvVi~atG  141 (542)
                      .+|+|+|+|..|..+|..|...|-+|.+|.++  +.....-...      +..        ..+++++++++|+|+.++.
T Consensus         1 MkI~ViGaG~~GtalA~~la~~g~~V~l~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ad~Ii~avp   80 (180)
T d1txga2           1 MIVSILGAGAMGSALSVPLVDNGNEVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLENAEVVLLGVS   80 (180)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHHCCEEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTTCSEEEECSC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEEecccHHHHHHHhhhhhhhhhcchhccccccccccHHHHHhccchhhcccc
Confidence            37999999999999999999999999999763  3211111000      110        2346788999999999886


Q ss_pred             CcccCC--HHHHhccCCCeEEEe
Q psy4626         142 NKNVVT--REHMDKMKNGCVVCN  162 (542)
Q Consensus       142 ~~~lI~--~e~l~~mk~Gailvn  162 (542)
                      +..+-.  .+....+++..+++.
T Consensus        81 s~~~~~~~~~l~~~l~~~~ii~~  103 (180)
T d1txga2          81 TDGVLPVMSRILPYLKDQYIVLI  103 (180)
T ss_dssp             GGGHHHHHHHHTTTCCSCEEEEC
T ss_pred             hhhhHHHHHhhccccccceeccc
Confidence            543321  122334555544443

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=96.03  E-value=0.0033  Score=53.12  Aligned_cols=63  Identities=21%  Similarity=0.390  Sum_probs=47.7

Q ss_pred             cEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeC--H--HHH-----hcCCcEEEEcCCC
Q psy4626          78 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVK--L--NEV-----IRTVDIVVTATGN  142 (542)
Q Consensus        78 ktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~--l--~e~-----l~~aDvVi~atG~  142 (542)
                      |.++|+|+|.+|+.+++.|++.  .|.++|.+|.+.......|+.++.  .  .+.     +..|+.++.++..
T Consensus         1 kHivI~G~g~~g~~l~~~L~~~--~i~vi~~d~~~~~~~~~~~~~~i~Gd~~~~~~L~~a~i~~A~~vi~~~~~   72 (129)
T d2fy8a1           1 RHVVICGWSESTLECLRELRGS--EVFVLAEDENVRKKVLRSGANFVHGDPTRVSDLEKANVRGARAVIVNLES   72 (129)
T ss_dssp             CCEEEESCCHHHHHHHHTSCGG--GEEEEESCTTHHHHHHHTTCEEEESCTTSHHHHHHTTCTTCSEEEECCSS
T ss_pred             CEEEEECCCHHHHHHHHHHcCC--CCEEEEcchHHHHHHHhcCccccccccCCHHHHHHhhhhcCcEEEEeccc
Confidence            4589999999999999999755  577788899887777777876542  1  122     4689999888754

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=96.01  E-value=0.0039  Score=54.84  Aligned_cols=67  Identities=16%  Similarity=0.156  Sum_probs=48.5

Q ss_pred             CcEEEEEcCChhHHHHHHHHHhCCC-EEEEEeCCchhhh-hhhc-------CCce--e--eCHHHHhcCCcEEEEcCCCc
Q psy4626          77 GKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICAL-QACM-------DGFS--V--VKLNEVIRTVDIVVTATGNK  143 (542)
Q Consensus        77 GktVvViG~G~IG~~vA~~l~~~Ga-~Viv~d~dp~r~~-~A~~-------~G~~--v--~~l~e~l~~aDvVi~atG~~  143 (542)
                      ..+|.|+|+|.+|..+|..+...+. ++..+|+++.++. ++..       .+..  +  .+..+.++++|+|+.+.|.+
T Consensus         3 ~~KI~IIGaG~VG~~~a~~l~~~~l~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~v~~~~~~~~~~~advvvitag~~   82 (150)
T d1t2da1           3 KAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTYDDLAGADVVIVTAGFT   82 (150)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEECCGGGGTTCSEEEECCSCS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCeEEEEeccCCcceeeecchhhhccccCCCcEEEecccccccCCCcEEEEecccc
Confidence            5689999999999999998887776 9999999886643 1111       1111  1  12346678999999988754

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=96.01  E-value=0.015  Score=54.42  Aligned_cols=43  Identities=14%  Similarity=0.293  Sum_probs=38.0

Q ss_pred             cccCcEEEEEcCCh-hHHHHHHHHHhCCCEEEEEeCCchhhhhh
Q psy4626          74 MFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQA  116 (542)
Q Consensus        74 ~l~GktVvViG~G~-IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A  116 (542)
                      .+.||+++|.|.+. ||+.+|+.|...|++|++++++..++.+.
T Consensus         2 ~l~gK~alItGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~   45 (241)
T d2a4ka1           2 RLSGKTILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEA   45 (241)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             cCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence            36899999999965 99999999999999999999998776543

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=96.01  E-value=0.0029  Score=49.78  Aligned_cols=35  Identities=29%  Similarity=0.395  Sum_probs=32.3

Q ss_pred             cEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchh
Q psy4626          78 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPIC  112 (542)
Q Consensus        78 ktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r  112 (542)
                      |+|+|+|.|-.|+.++..++.+|.+|+++|.++..
T Consensus         2 k~vgIlG~GQLgrMl~~Aa~~LG~~v~vldp~~~~   36 (78)
T d3etja2           2 KQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAEP   36 (78)
T ss_dssp             EEEEEEBCSHHHHHHHHHHGGGTEEEEEECTTSCG
T ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCEEEEEcCCCCC
Confidence            68999999999999999999999999999976643

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=95.97  E-value=0.015  Score=54.68  Aligned_cols=42  Identities=17%  Similarity=0.216  Sum_probs=37.1

Q ss_pred             cccCcEEEEEcCC-hhHHHHHHHHHhCCCEEEEEeCCchhhhh
Q psy4626          74 MFGGKQVVLCGYG-EVGKGCCQSLKGLGCVIYITEIDPICALQ  115 (542)
Q Consensus        74 ~l~GktVvViG~G-~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~  115 (542)
                      .+.||+++|.|.+ -||+.+|+.|...|++|+++++++.++.+
T Consensus         3 rL~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~   45 (251)
T d1zk4a1           3 RLDGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEK   45 (251)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHH
Confidence            3789999999975 59999999999999999999998876543

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=95.94  E-value=0.003  Score=54.45  Aligned_cols=35  Identities=23%  Similarity=0.340  Sum_probs=31.9

Q ss_pred             cCcEEEEEcCChhHHHHHHHHHhCC--CEEEEEeCCc
Q psy4626          76 GGKQVVLCGYGEVGKGCCQSLKGLG--CVIYITEIDP  110 (542)
Q Consensus        76 ~GktVvViG~G~IG~~vA~~l~~~G--a~Viv~d~dp  110 (542)
                      +||+|+|||.|++|..+|..|+.+|  ++|+++|.+|
T Consensus         1 ~gkrivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~   37 (186)
T d1fcda1           1 AGRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNT   37 (186)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred             CCCcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCC
Confidence            5999999999999999999999888  5899998776

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.90  E-value=0.007  Score=53.74  Aligned_cols=69  Identities=19%  Similarity=0.249  Sum_probs=48.2

Q ss_pred             ccCcEEEEEcCChhHHHHHHHHHhCCC--EEEEEeCCchhhh-hhh-------cCCcee---eCHHHHhcCCcEEEEcCC
Q psy4626          75 FGGKQVVLCGYGEVGKGCCQSLKGLGC--VIYITEIDPICAL-QAC-------MDGFSV---VKLNEVIRTVDIVVTATG  141 (542)
Q Consensus        75 l~GktVvViG~G~IG~~vA~~l~~~Ga--~Viv~d~dp~r~~-~A~-------~~G~~v---~~l~e~l~~aDvVi~atG  141 (542)
                      +.-.+|+|+|+|.+|..+|..+...|.  ++..+|+++.++. ++.       ..+...   ..-.+.+.++|+||.+.|
T Consensus        17 ~~~~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~~~~a~g~alDl~~~~~~~~~~~~~~~~d~~~~~~adivvitag   96 (159)
T d2ldxa1          17 LSRCKITVVGVGDVGMACAISILLKGLADELALVDADTDKLRGEALDLQHGSLFLSTPKIVFGKDYNVSANSKLVIITAG   96 (159)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSCHHHHHHHHHHHHHTTTTCSCCEEEEESSGGGGTTEEEEEECCS
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCchhhhccHHHHhCcchhcCCCeEEeccchhhhccccEEEEecc
Confidence            455689999999999999999988876  8999999886542 111       111111   112345678888888877


Q ss_pred             Cc
Q psy4626         142 NK  143 (542)
Q Consensus       142 ~~  143 (542)
                      .+
T Consensus        97 ~~   98 (159)
T d2ldxa1          97 AR   98 (159)
T ss_dssp             CC
T ss_pred             cc
Confidence            53

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=95.88  E-value=0.0042  Score=53.90  Aligned_cols=37  Identities=32%  Similarity=0.369  Sum_probs=33.6

Q ss_pred             EEEEE-cCChhHHHHHHHHHhCCCEEEEEeCCchhhhh
Q psy4626          79 QVVLC-GYGEVGKGCCQSLKGLGCVIYITEIDPICALQ  115 (542)
Q Consensus        79 tVvVi-G~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~  115 (542)
                      +|+|+ |.|.+|+.+|+.|...|.+|++++++|.++..
T Consensus         2 ki~vigGaG~iG~alA~~la~~G~~V~l~~R~~e~~~~   39 (212)
T d1jaya_           2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEA   39 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHHHHH
T ss_pred             EEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHH
Confidence            68899 78999999999999999999999999987543

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.85  E-value=0.0042  Score=52.32  Aligned_cols=35  Identities=23%  Similarity=0.380  Sum_probs=32.4

Q ss_pred             CcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCch
Q psy4626          77 GKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPI  111 (542)
Q Consensus        77 GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~  111 (542)
                      -++++|+|.|.||..+|..+..+|++|+++++.+.
T Consensus        23 p~~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~~   57 (122)
T d1v59a2          23 PKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQ   57 (122)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CCeEEEECCCchHHHHHHHHHhhCcceeEEEeccc
Confidence            47999999999999999999999999999997664

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=95.84  E-value=0.012  Score=55.22  Aligned_cols=42  Identities=17%  Similarity=0.250  Sum_probs=37.4

Q ss_pred             ccCcEEEEEcCC-hhHHHHHHHHHhCCCEEEEEeCCchhhhhh
Q psy4626          75 FGGKQVVLCGYG-EVGKGCCQSLKGLGCVIYITEIDPICALQA  116 (542)
Q Consensus        75 l~GktVvViG~G-~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A  116 (542)
                      +.||+++|.|.+ -||+.+|+.|...|++|+++++++.++.+.
T Consensus         3 L~gK~~lITGas~GIG~aia~~l~~~G~~V~~~~r~~~~l~~~   45 (242)
T d1ulsa_           3 LKDKAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREA   45 (242)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence            679999999985 599999999999999999999998776544

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=95.84  E-value=0.017  Score=54.34  Aligned_cols=43  Identities=12%  Similarity=0.055  Sum_probs=37.5

Q ss_pred             ccccCcEEEEEcCC-hhHHHHHHHHHhCCCEEEEEeCCchhhhh
Q psy4626          73 VMFGGKQVVLCGYG-EVGKGCCQSLKGLGCVIYITEIDPICALQ  115 (542)
Q Consensus        73 ~~l~GktVvViG~G-~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~  115 (542)
                      ..+.||+++|.|.+ -||+.+|+.|...|++|+++++++.++.+
T Consensus         6 f~lenKvalITGas~GIG~a~a~~la~~Ga~V~~~~r~~~~l~~   49 (251)
T d2c07a1           6 YCGENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDS   49 (251)
T ss_dssp             CCCSSCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHHHHHH
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHH
Confidence            35789999999995 69999999999999999999998876543

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.83  E-value=0.011  Score=55.52  Aligned_cols=67  Identities=16%  Similarity=0.358  Sum_probs=49.2

Q ss_pred             ccCcEEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhc-CCce--eeCH------H---HHhcCCcEEEEcCC
Q psy4626          75 FGGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACM-DGFS--VVKL------N---EVIRTVDIVVTATG  141 (542)
Q Consensus        75 l~GktVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~-~G~~--v~~l------~---e~l~~aDvVi~atG  141 (542)
                      +.||+++|.|. +-||+.+|+.|...|++|+++++++.++.+... .+..  ..+.      +   +.+...|++|.+.|
T Consensus         4 l~gK~alITGas~GIG~aia~~la~~G~~Vi~~~r~~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~id~lVn~ag   83 (245)
T d2ag5a1           4 LDGKVIILTAAAQGIGQAAALAFAREGAKVIATDINESKLQELEKYPGIQTRVLDVTKKKQIDQFANEVERLDVLFNVAG   83 (245)
T ss_dssp             TTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHGGGGGSTTEEEEECCTTCHHHHHHHHHHCSCCSEEEECCC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhccCCceeeeeccccccccccccccccceeEEeccc
Confidence            78999999998 579999999999999999999999877654333 2332  2221      1   11357788888765

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=95.81  E-value=0.005  Score=51.15  Aligned_cols=38  Identities=13%  Similarity=0.008  Sum_probs=34.6

Q ss_pred             cccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCch
Q psy4626          74 MFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPI  111 (542)
Q Consensus        74 ~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~  111 (542)
                      ..++++++|+|.|.||..+|..++.+|.+|+++++.+.
T Consensus        19 ~~~~~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~~~   56 (121)
T d1mo9a2          19 YEPGSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEP   56 (121)
T ss_dssp             SCCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCT
T ss_pred             hCCCCEEEEECCCHHHHHHHHHHHhcchhheEeeccch
Confidence            34689999999999999999999999999999998763

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=95.80  E-value=0.0046  Score=51.48  Aligned_cols=35  Identities=23%  Similarity=0.324  Sum_probs=32.3

Q ss_pred             CcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCch
Q psy4626          77 GKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPI  111 (542)
Q Consensus        77 GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~  111 (542)
                      .++++|+|.|++|..+|..++.+|.+|+++++.+.
T Consensus        21 p~~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~~   55 (116)
T d1gesa2          21 PERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDA   55 (116)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CCEEEEECCChhhHHHHHHhhccccEEEEEeecch
Confidence            47899999999999999999999999999998763

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=95.80  E-value=0.0054  Score=51.68  Aligned_cols=37  Identities=19%  Similarity=0.227  Sum_probs=33.7

Q ss_pred             ccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCch
Q psy4626          75 FGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPI  111 (542)
Q Consensus        75 l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~  111 (542)
                      ..+++|+|+|.|++|..+|..++.+|.+|++++..+.
T Consensus        28 ~~~k~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~~   64 (123)
T d1nhpa2          28 PEVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDR   64 (123)
T ss_dssp             TTCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             cCCCEEEEECChHHHHHHHHHhhccceEEEEEEecCc
Confidence            3588999999999999999999999999999997653

>d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Diaminopimelic acid dehydrogenase (DAPDH)
species: Corynebacterium glutamicum [TaxId: 1718]

Probab=95.80  E-value=0.006  Score=54.11  Aligned_cols=81  Identities=15%  Similarity=0.224  Sum_probs=55.1

Q ss_pred             cEEEEEcCChhHHHHHHHHHhC-CCEEE-EEeCCchhhhhhhcCCce-eeCHHHHhcCCcEEEEcCCCcccCCHHHHhcc
Q psy4626          78 KQVVLCGYGEVGKGCCQSLKGL-GCVIY-ITEIDPICALQACMDGFS-VVKLNEVIRTVDIVVTATGNKNVVTREHMDKM  154 (542)
Q Consensus        78 ktVvViG~G~IG~~vA~~l~~~-Ga~Vi-v~d~dp~r~~~A~~~G~~-v~~l~e~l~~aDvVi~atG~~~lI~~e~l~~m  154 (542)
                      -+|+|+|+|.+|+..+..++.. +++++ ++++++.+..   ..++. ..+.++...+.|+|+.||++..-. ....+.+
T Consensus         4 irvgiiG~G~ig~~~~~~l~~~~~~elvav~~~~~~~~~---~~~~~~~~~~~~~~~~~D~Vvi~tp~~~h~-~~a~~aL   79 (170)
T d1f06a1           4 IRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATLDT---KTPVFDVADVDKHADDVDVLFLCMGSATDI-PEQAPKF   79 (170)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTCSSEEEEEEEESSSCCSS---SSCEEEGGGGGGTTTTCSEEEECSCTTTHH-HHHHHHH
T ss_pred             ceEEEECChHHHHHHHHHHHhCCCcEEEEEEeccccccc---ccccccchhhhhhccccceEEEeCCCcccH-HHHHHHH
Confidence            3799999999999999999876 56655 5677664322   22332 334555668899999998654222 3456677


Q ss_pred             CCCeEEEe
Q psy4626         155 KNGCVVCN  162 (542)
Q Consensus       155 k~Gailvn  162 (542)
                      +.|.-++.
T Consensus        80 ~aG~~vv~   87 (170)
T d1f06a1          80 AQFACTVD   87 (170)
T ss_dssp             TTTSEEEC
T ss_pred             HCCCcEEE
Confidence            88886654

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.79  E-value=0.0051  Score=51.08  Aligned_cols=36  Identities=22%  Similarity=0.188  Sum_probs=32.9

Q ss_pred             cCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCch
Q psy4626          76 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPI  111 (542)
Q Consensus        76 ~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~  111 (542)
                      ..++++|+|.|.+|..+|..+..+|.+|+++++.+.
T Consensus        21 ~p~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~~   56 (117)
T d1ebda2          21 VPKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGE   56 (117)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             cCCeEEEECCCccceeeeeeecccccEEEEEEecce
Confidence            358999999999999999999999999999997664

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.77  E-value=0.009  Score=56.04  Aligned_cols=41  Identities=17%  Similarity=0.354  Sum_probs=36.6

Q ss_pred             ccCcEEEEEcCC-hhHHHHHHHHHhCCCEEEEEeCCchhhhh
Q psy4626          75 FGGKQVVLCGYG-EVGKGCCQSLKGLGCVIYITEIDPICALQ  115 (542)
Q Consensus        75 l~GktVvViG~G-~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~  115 (542)
                      +.||+++|.|.+ -||+.+|+.|...|++|+++++++.++.+
T Consensus         3 l~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~   44 (242)
T d1cyda_           3 FSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVS   44 (242)
T ss_dssp             CTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHH
Confidence            689999999985 59999999999999999999998876543

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.71  E-value=0.0077  Score=56.75  Aligned_cols=41  Identities=17%  Similarity=0.260  Sum_probs=37.5

Q ss_pred             cccCcEEEEEcCCh-hHHHHHHHHHhCCCEEEEEeCCchhhh
Q psy4626          74 MFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICAL  114 (542)
Q Consensus        74 ~l~GktVvViG~G~-IG~~vA~~l~~~Ga~Viv~d~dp~r~~  114 (542)
                      .+.||+++|.|.+. ||+.+|..+...|++|+++++++.++.
T Consensus         4 ~l~Gkv~lITGas~GIG~~ia~~la~~G~~V~l~~r~~~~l~   45 (244)
T d1yb1a_           4 SVTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLE   45 (244)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHH
Confidence            57899999999975 999999999999999999999987754

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.69  E-value=0.012  Score=55.56  Aligned_cols=42  Identities=24%  Similarity=0.373  Sum_probs=37.5

Q ss_pred             cccCcEEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCchhhhh
Q psy4626          74 MFGGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQ  115 (542)
Q Consensus        74 ~l~GktVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~  115 (542)
                      .+.||+++|.|. +-||+.+|+.|...|++|+++++++.++.+
T Consensus         3 rl~GK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~   45 (250)
T d1ydea1           3 RYAGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRA   45 (250)
T ss_dssp             TTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHH
Confidence            478999999998 569999999999999999999999876554

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=95.68  E-value=0.005  Score=55.89  Aligned_cols=35  Identities=29%  Similarity=0.335  Sum_probs=32.1

Q ss_pred             cCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCc
Q psy4626          76 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDP  110 (542)
Q Consensus        76 ~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp  110 (542)
                      .-++|+|||.|..|..+|..|+..|.+|+++|+++
T Consensus         5 ~~~kVvVIGaGiaGl~~A~~L~~~G~~V~vier~~   39 (268)
T d1c0pa1           5 SQKRVVVLGSGVIGLSSALILARKGYSVHILARDL   39 (268)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCcEEEECccHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            35689999999999999999999999999999764

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=95.65  E-value=0.01  Score=55.24  Aligned_cols=66  Identities=21%  Similarity=0.333  Sum_probs=46.9

Q ss_pred             ccCcEEEEEcCC-hhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCH----H---HHhcCCcEEEEcCC
Q psy4626          75 FGGKQVVLCGYG-EVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKL----N---EVIRTVDIVVTATG  141 (542)
Q Consensus        75 l~GktVvViG~G-~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l----~---e~l~~aDvVi~atG  141 (542)
                      +.||+++|.|.+ -||+.+|+.|...|++|+++++++....+.. ..+...++    +   +.+...|++|.+.|
T Consensus         2 LkgK~~lVTGas~GIG~aia~~l~~~Ga~V~~~~r~~~~l~~~~-~~~~~~Dv~~~~~~~~~~~g~iD~lVnnAG   75 (234)
T d1o5ia_           2 IRDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNEELLKRSG-HRYVVCDLRKDLDLLFEKVKEVDILVLNAG   75 (234)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHTC-SEEEECCTTTCHHHHHHHSCCCSEEEECCC
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHhcC-CcEEEcchHHHHHHHHHHhCCCcEEEeccc
Confidence            579999999985 5999999999999999999999876544321 11112222    2   22356788777665

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=95.62  E-value=0.0059  Score=55.18  Aligned_cols=38  Identities=13%  Similarity=0.191  Sum_probs=34.8

Q ss_pred             cccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCch
Q psy4626          74 MFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPI  111 (542)
Q Consensus        74 ~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~  111 (542)
                      ...+|+|+|||.||.|...|..|+..|.+|+++|.++.
T Consensus        40 ~~~~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~~   77 (179)
T d1ps9a3          40 AVQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSE   77 (179)
T ss_dssp             CSSCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSS
T ss_pred             CCCCcEEEEECccHHHHHHHHHHHhhccceEEEeccCc
Confidence            35689999999999999999999999999999998763

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=95.62  E-value=0.0058  Score=51.16  Aligned_cols=34  Identities=24%  Similarity=0.303  Sum_probs=31.9

Q ss_pred             CcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCc
Q psy4626          77 GKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDP  110 (542)
Q Consensus        77 GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp  110 (542)
                      .++|+|+|.|.+|..+|..++.+|.+|+++++.+
T Consensus        22 p~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~~   55 (117)
T d1onfa2          22 SKKIGIVGSGYIAVELINVIKRLGIDSYIFARGN   55 (117)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSS
T ss_pred             CCEEEEECCchHHHHHHHHHHhccccceeeehhc
Confidence            5899999999999999999999999999999765

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=95.61  E-value=0.0069  Score=50.95  Aligned_cols=36  Identities=17%  Similarity=0.341  Sum_probs=33.6

Q ss_pred             cCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCch
Q psy4626          76 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPI  111 (542)
Q Consensus        76 ~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~  111 (542)
                      .+++++|+|.|.+|..+|..++.+|.+|+++++.+.
T Consensus        29 ~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~   64 (121)
T d1d7ya2          29 PQSRLLIVGGGVIGLELAATARTAGVHVSLVETQPR   64 (121)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             cCCeEEEECcchhHHHHHHHhhcccceEEEEeeccc
Confidence            578999999999999999999999999999998764

>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=95.61  E-value=0.0088  Score=55.46  Aligned_cols=36  Identities=17%  Similarity=0.282  Sum_probs=31.5

Q ss_pred             CcEEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCchh
Q psy4626          77 GKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPIC  112 (542)
Q Consensus        77 GktVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp~r  112 (542)
                      +.+|+|.|. +-||+.+|+.|...|++|+++|+++..
T Consensus         2 ~gkVlITGas~GIG~aia~~l~~~G~~V~~~~~~~~~   38 (235)
T d1ooea_           2 SGKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSAND   38 (235)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCCT
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCchh
Confidence            456899998 579999999999999999999988754

>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Probable oxidoreductase At4g09670
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.53  E-value=0.017  Score=51.39  Aligned_cols=82  Identities=9%  Similarity=0.123  Sum_probs=56.7

Q ss_pred             EEEEEcCChhHHHHHHHHHhC-CCEEE-EEeCCchhhhh-hhcCCc----e-eeCHHHHh--cCCcEEEEcCCCcccCCH
Q psy4626          79 QVVLCGYGEVGKGCCQSLKGL-GCVIY-ITEIDPICALQ-ACMDGF----S-VVKLNEVI--RTVDIVVTATGNKNVVTR  148 (542)
Q Consensus        79 tVvViG~G~IG~~vA~~l~~~-Ga~Vi-v~d~dp~r~~~-A~~~G~----~-v~~l~e~l--~~aDvVi~atG~~~lI~~  148 (542)
                      +++|+|+|.+|+..++.++.. +++|+ ++|+++.++.. +...++    . +.++++++  .+.|+|+.+|.+..-. .
T Consensus         3 ki~iIG~G~~g~~~~~~l~~~~~~~i~ai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~iD~v~I~tp~~~h~-~   81 (184)
T d1ydwa1           3 RIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKAFATANNYPESTKIHGSYESLLEDPEIDALYVPLPTSLHV-E   81 (184)
T ss_dssp             EEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCCTTCEEESSHHHHHHCTTCCEEEECCCGGGHH-H
T ss_pred             EEEEEcCCHHHHHHHHHHHhCCCCEEEEEEeCCccccccchhccccccceeecCcHHHhhhccccceeeecccchhhc-c
Confidence            699999999999999999876 66776 57998877543 333342    2 35778877  5789999987543222 2


Q ss_pred             HHHhccCCCeEEE
Q psy4626         149 EHMDKMKNGCVVC  161 (542)
Q Consensus       149 e~l~~mk~Gailv  161 (542)
                      -....++.|.-+.
T Consensus        82 ~~~~~l~~g~~v~   94 (184)
T d1ydwa1          82 WAIKAAEKGKHIL   94 (184)
T ss_dssp             HHHHHHTTTCEEE
T ss_pred             hhhhhhhccceee
Confidence            3455577776554

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=95.44  E-value=0.033  Score=52.61  Aligned_cols=39  Identities=18%  Similarity=0.154  Sum_probs=34.8

Q ss_pred             cccCcEEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCchh
Q psy4626          74 MFGGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPIC  112 (542)
Q Consensus        74 ~l~GktVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp~r  112 (542)
                      .+.||+++|.|. +-||+.+|+.|...|++|+++++++..
T Consensus         4 dL~gK~alITGas~GIG~aia~~la~~G~~Vv~~~r~~~~   43 (261)
T d1geea_           4 DLEGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKED   43 (261)
T ss_dssp             GGTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcHH
Confidence            478999999998 469999999999999999999987643

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=95.43  E-value=0.0089  Score=55.61  Aligned_cols=35  Identities=29%  Similarity=0.417  Sum_probs=32.4

Q ss_pred             cCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCc
Q psy4626          76 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDP  110 (542)
Q Consensus        76 ~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp  110 (542)
                      ..|+|+|||+|+.|..+|..|+..|.+|+++|.++
T Consensus        29 ~pkkV~IIGaG~aGLsaA~~L~~~G~~V~vlE~~~   63 (370)
T d2iida1          29 NPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASE   63 (370)
T ss_dssp             SCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            46899999999999999999999999999999655

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=95.38  E-value=0.0075  Score=55.41  Aligned_cols=35  Identities=17%  Similarity=0.246  Sum_probs=32.0

Q ss_pred             cCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCc
Q psy4626          76 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDP  110 (542)
Q Consensus        76 ~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp  110 (542)
                      ..++|+|||+|+.|..+|..|+..|.+|+++|.++
T Consensus         3 ~~~kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er~~   37 (265)
T d2voua1           3 TTDRIAVVGGSISGLTAALMLRDAGVDVDVYERSP   37 (265)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            35789999999999999999999999999999754

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.37  E-value=0.0081  Score=50.60  Aligned_cols=34  Identities=18%  Similarity=0.179  Sum_probs=31.9

Q ss_pred             CcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCc
Q psy4626          77 GKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDP  110 (542)
Q Consensus        77 GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp  110 (542)
                      .++++|+|.|.||..+|..++.+|.+|+++++.+
T Consensus        22 pk~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~~   55 (125)
T d3grsa2          22 PGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHD   55 (125)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCEEEEEcCCccHHHHHHHHhcCCcEEEEEeecc
Confidence            4799999999999999999999999999999865

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.34  E-value=0.0055  Score=51.63  Aligned_cols=34  Identities=18%  Similarity=0.258  Sum_probs=31.1

Q ss_pred             CcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCc
Q psy4626          77 GKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDP  110 (542)
Q Consensus        77 GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp  110 (542)
                      .++++|+|.|.||..+|..++.+|.+|+++++++
T Consensus        20 P~~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~~   53 (122)
T d1h6va2          20 PGKTLVVGASYVALECAGFLAGIGLDVTVMVRSI   53 (122)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             CCeEEEECCCccHHHHHHHHhhcCCeEEEEEech
Confidence            4689999999999999999999999999998653

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=95.32  E-value=0.0068  Score=50.82  Aligned_cols=35  Identities=14%  Similarity=0.256  Sum_probs=32.5

Q ss_pred             CcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCch
Q psy4626          77 GKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPI  111 (542)
Q Consensus        77 GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~  111 (542)
                      +++++|+|.|++|..+|..|+.+|.+|+++++.+.
T Consensus        32 ~~~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~   66 (122)
T d1xhca2          32 SGEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAM   66 (122)
T ss_dssp             HSEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSC
T ss_pred             CCcEEEECCcHHHHHHHHHhhcccceEEEEecccc
Confidence            57999999999999999999999999999997764

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=95.30  E-value=0.039  Score=52.06  Aligned_cols=40  Identities=18%  Similarity=0.351  Sum_probs=35.3

Q ss_pred             ccccCcEEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCchh
Q psy4626          73 VMFGGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPIC  112 (542)
Q Consensus        73 ~~l~GktVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp~r  112 (542)
                      ..+.||+++|.|. +-||+.+|+.|...|++|+++++++..
T Consensus        14 ~sL~gK~~lITGas~GIG~aia~~la~~Ga~Vvi~~~~~~~   54 (272)
T d1g0oa_          14 ASLEGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTE   54 (272)
T ss_dssp             GCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHH
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchH
Confidence            3588999999996 679999999999999999999887543

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.30  E-value=0.017  Score=54.29  Aligned_cols=42  Identities=14%  Similarity=0.190  Sum_probs=37.4

Q ss_pred             cccCcEEEEEcCC-hhHHHHHHHHHhCCCEEEEEeCCchhhhh
Q psy4626          74 MFGGKQVVLCGYG-EVGKGCCQSLKGLGCVIYITEIDPICALQ  115 (542)
Q Consensus        74 ~l~GktVvViG~G-~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~  115 (542)
                      .+.||+++|.|.+ -||+.+|+.|...|++|+++++++.++..
T Consensus         3 ~L~gK~alITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~   45 (244)
T d1nffa_           3 RLTGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKA   45 (244)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHH
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHH
Confidence            4789999999995 59999999999999999999999877543

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=95.25  E-value=0.024  Score=49.30  Aligned_cols=65  Identities=20%  Similarity=0.284  Sum_probs=43.7

Q ss_pred             EEEEEc-CChhHHHHHHHHH-h--CCCEEEEEeCCchhhhhhhc--CC-c--e--e---eCHHHHhcCCcEEEEcCCCc
Q psy4626          79 QVVLCG-YGEVGKGCCQSLK-G--LGCVIYITEIDPICALQACM--DG-F--S--V---VKLNEVIRTVDIVVTATGNK  143 (542)
Q Consensus        79 tVvViG-~G~IG~~vA~~l~-~--~Ga~Viv~d~dp~r~~~A~~--~G-~--~--v---~~l~e~l~~aDvVi~atG~~  143 (542)
                      +|.|+| .|.+|..+|..+. .  ++-++..+|+++....++..  +. +  .  .   .+..+.++++|+||.+.|.+
T Consensus         2 KV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~~~~g~a~Dl~h~~~~~~~~~~~~~~~~~~~~~aDvvvitaG~~   80 (145)
T d2cmda1           2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATPALEGADVVLISAGVR   80 (145)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSSTTHHHHHHHHHTSCSSCEEEEECSSCCHHHHTTCSEEEECCSCC
T ss_pred             EEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccccchhHHHHHHCCccccCCcEEEcCCCccccCCCCEEEECCCcc
Confidence            799999 5999999998764 3  34599999987743222221  11 0  1  1   12245688999999998743

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=95.23  E-value=0.01  Score=49.52  Aligned_cols=35  Identities=17%  Similarity=0.150  Sum_probs=32.2

Q ss_pred             cCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCc
Q psy4626          76 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDP  110 (542)
Q Consensus        76 ~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp  110 (542)
                      ..++++|+|.|.||..+|..++.+|.+|++++..+
T Consensus        21 ~p~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~~   55 (119)
T d3lada2          21 VPGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMD   55 (119)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             CCCeEEEECCChHHHHHHHHHHHcCCceEEEEeec
Confidence            45889999999999999999999999999998655

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.17  E-value=0.014  Score=55.30  Aligned_cols=90  Identities=21%  Similarity=0.264  Sum_probs=59.0

Q ss_pred             cCcEEE-EEcC-ChhHHHHHHHHHh-CCCEEEEEeCCchhhhhhh----cCCce--e--eC---HH---H----H---hc
Q psy4626          76 GGKQVV-LCGY-GEVGKGCCQSLKG-LGCVIYITEIDPICALQAC----MDGFS--V--VK---LN---E----V---IR  131 (542)
Q Consensus        76 ~GktVv-ViG~-G~IG~~vA~~l~~-~Ga~Viv~d~dp~r~~~A~----~~G~~--v--~~---l~---e----~---l~  131 (542)
                      .||+|+ |.|. +-||+.+|+.|.. .|++|+++++++.++.++.    ..|..  +  .+   .+   +    +   ..
T Consensus         1 ~g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dvs~~~sv~~~~~~~~~~~g   80 (275)
T d1wmaa1           1 SGIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYG   80 (275)
T ss_dssp             CCCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEEecCCHHHHHHHHHHHHHhcC
Confidence            378885 5565 5699999999876 4899999999998765432    12221  1  22   21   1    1   25


Q ss_pred             CCcEEEEcCCCccc------------------------CCHHHHhccCCCeEEEeccC
Q psy4626         132 TVDIVVTATGNKNV------------------------VTREHMDKMKNGCVVCNMGH  165 (542)
Q Consensus       132 ~aDvVi~atG~~~l------------------------I~~e~l~~mk~GailvnvG~  165 (542)
                      .-|++|...|....                        +....+..|++++.++|+++
T Consensus        81 ~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~ivnisS  138 (275)
T d1wmaa1          81 GLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSS  138 (275)
T ss_dssp             SEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECC
T ss_pred             CcEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccc
Confidence            79999997763110                        01345677788899999886

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=95.08  E-value=0.0094  Score=49.30  Aligned_cols=35  Identities=20%  Similarity=0.308  Sum_probs=32.4

Q ss_pred             CcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCch
Q psy4626          77 GKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPI  111 (542)
Q Consensus        77 GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~  111 (542)
                      .++++|+|.|++|..+|..++.+|.+|+++++.+.
T Consensus        21 p~~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~~~   55 (115)
T d1lvla2          21 PQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARER   55 (115)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHhhcccceEEEeeecc
Confidence            58999999999999999999999999999997663

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=95.08  E-value=0.012  Score=50.18  Aligned_cols=37  Identities=11%  Similarity=0.175  Sum_probs=34.0

Q ss_pred             ccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCch
Q psy4626          75 FGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPI  111 (542)
Q Consensus        75 l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~  111 (542)
                      ..+++++|+|.|.+|..+|..++..|.+|++++..+.
T Consensus        33 ~~~k~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~~~   69 (133)
T d1q1ra2          33 IADNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAAR   69 (133)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             ccCCEEEEECCchHHHHHHHHHHhhCcceeeeeeccc
Confidence            3579999999999999999999999999999997764

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=95.06  E-value=0.0067  Score=51.05  Aligned_cols=37  Identities=19%  Similarity=0.235  Sum_probs=33.7

Q ss_pred             cCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchh
Q psy4626          76 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPIC  112 (542)
Q Consensus        76 ~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r  112 (542)
                      ..++++|+|.|.||..+|..++.+|++|+++++++..
T Consensus        24 ~p~~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~~~   60 (123)
T d1dxla2          24 IPKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEI   60 (123)
T ss_dssp             CCSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSS
T ss_pred             cCCeEEEEccchHHHHHHHHHHhcCCeEEEEEEcccc
Confidence            4689999999999999999999999999999987743

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=95.06  E-value=0.018  Score=54.17  Aligned_cols=41  Identities=20%  Similarity=0.358  Sum_probs=36.7

Q ss_pred             ccCcEEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCchhhhh
Q psy4626          75 FGGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQ  115 (542)
Q Consensus        75 l~GktVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~  115 (542)
                      +.||+++|.|. +-||+.+|+.|...|++|+++++++.++.+
T Consensus         3 L~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~   44 (256)
T d1k2wa_           3 LDGKTALITGSARGIGRAFAEAYVREGARVAIADINLEAARA   44 (256)
T ss_dssp             TTTEEEEEETCSSHHHHHHHHHHHHTTEEEEEEESCHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHH
Confidence            67999999999 469999999999999999999999876553

>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Malate oxidoreductase (malic enzyme)
species: Thermotoga maritima [TaxId: 2336]

Probab=95.05  E-value=0.14  Score=47.56  Aligned_cols=102  Identities=21%  Similarity=0.256  Sum_probs=74.6

Q ss_pred             hhcCccccCcEEEEEcCChhHHHHHHHHHhCCC-EEEEEeCCch-------------hhhhhhcC--CceeeCHHHHhcC
Q psy4626          69 RSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPI-------------CALQACMD--GFSVVKLNEVIRT  132 (542)
Q Consensus        69 r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga-~Viv~d~dp~-------------r~~~A~~~--G~~v~~l~e~l~~  132 (542)
                      |.++..+...+++++|+|.-|.++++.+...|. +++.+|+.-.             +...+...  .....++.+++++
T Consensus        18 ~~~g~~l~d~riv~~GAGsAg~gia~~l~~~~~~~i~~~D~~GLi~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~g   97 (222)
T d1vl6a1          18 KLTEKKIEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGILNENDPETCLNEYHLEIARITNPERLSGDLETALEG   97 (222)
T ss_dssp             HHHTCCTTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCTTSGGGCSSHHHHHHHHTSCTTCCCSCHHHHHTT
T ss_pred             HHhCCChhhcEEEEEChHHHHHHHHHHHHHhcccceEeecceeEEEcCcccccccHHHHHHHhhhcchhhhcchHhhccC
Confidence            445678899999999999999999999999898 8999987521             11111111  1112356778899


Q ss_pred             CcEEEEcCCCcccCCHHHHhccCCCeEEEeccCCCcccC
Q psy4626         133 VDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEID  171 (542)
Q Consensus       133 aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g~~eid  171 (542)
                      +++++..+ +.++++.+.+..|.+.-++.-.+....+++
T Consensus        98 ~~~~~g~~-~~~~~~~e~m~~~~~rPIIFpLSNPt~~~e  135 (222)
T d1vl6a1          98 ADFFIGVS-RGNILKPEWIKKMSRKPVIFALANPVPEID  135 (222)
T ss_dssp             CSEEEECS-CSSCSCHHHHTTSCSSCEEEECCSSSCSSC
T ss_pred             cceecccc-ccccccHHHHhhcCCCCEEEecCCCccchh
Confidence            99988765 577898889999988888887776544444

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=95.04  E-value=0.011  Score=55.20  Aligned_cols=42  Identities=17%  Similarity=0.388  Sum_probs=36.7

Q ss_pred             cccCcEEEEEcC-Ch--hHHHHHHHHHhCCCEEEEEeCCchhhhh
Q psy4626          74 MFGGKQVVLCGY-GE--VGKGCCQSLKGLGCVIYITEIDPICALQ  115 (542)
Q Consensus        74 ~l~GktVvViG~-G~--IG~~vA~~l~~~Ga~Viv~d~dp~r~~~  115 (542)
                      .+.||+++|.|+ |.  ||+.+|+.|...|++|++++++..+..+
T Consensus         3 ~l~gK~~lItGaag~~GIG~aiA~~la~~Ga~Vil~~~~~~~~~~   47 (268)
T d2h7ma1           3 LLDGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRLRLIQ   47 (268)
T ss_dssp             TTTTCEEEECCCSSTTCHHHHHHHHHHHTTCEEEEEECSCHHHHH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHHcCCEEEEEeCChHHHHH
Confidence            478999999996 54  9999999999999999999998876543

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=94.94  E-value=0.011  Score=50.11  Aligned_cols=36  Identities=17%  Similarity=0.177  Sum_probs=32.9

Q ss_pred             cCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCch
Q psy4626          76 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPI  111 (542)
Q Consensus        76 ~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~  111 (542)
                      ..++++|+|.|.||..+|..++.+|.+|++++..+.
T Consensus        25 ~p~~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~~~   60 (125)
T d1ojta2          25 VPGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDG   60 (125)
T ss_dssp             CCSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred             cCCeEEEECCCHHHHHHHHHhhcCCCEEEEEEeecc
Confidence            468999999999999999999999999999997663

>d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative oxidoreductase VCA1048
species: Vibrio cholerae [TaxId: 666]

Probab=94.88  E-value=0.015  Score=50.85  Aligned_cols=81  Identities=12%  Similarity=0.114  Sum_probs=53.6

Q ss_pred             EEEEEcCChhHHH-HHHHHHhC-CCEEEEEeCCchhhhhh-hcCCce--eeCHHHHh-cCCcEEEEcCCCcccCCHHHHh
Q psy4626          79 QVVLCGYGEVGKG-CCQSLKGL-GCVIYITEIDPICALQA-CMDGFS--VVKLNEVI-RTVDIVVTATGNKNVVTREHMD  152 (542)
Q Consensus        79 tVvViG~G~IG~~-vA~~l~~~-Ga~Viv~d~dp~r~~~A-~~~G~~--v~~l~e~l-~~aDvVi~atG~~~lI~~e~l~  152 (542)
                      +|+|+|+|.+|+. .+..++.. +.+++++|.++.++... ...+..  +.+.++++ .+.|+|+.|+.+..-. .-...
T Consensus         3 rvgiiG~G~~~~~~~~~~l~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ll~~~iD~V~I~tp~~~H~-~~~~~   81 (167)
T d1xeaa1           3 KIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVLGTLATRYRVSATCTDYRDVLQYGVDAVMIHAATDVHS-TLAAF   81 (167)
T ss_dssp             EEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHHHHHHHHHTTCCCCCSSTTGGGGGCCSEEEECSCGGGHH-HHHHH
T ss_pred             EEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhcccccccccHHHhcccccceecccccccccc-ccccc
Confidence            7999999999965 56777666 56888999998876543 334443  34566766 4789999987542212 22344


Q ss_pred             ccCCCeEE
Q psy4626         153 KMKNGCVV  160 (542)
Q Consensus       153 ~mk~Gail  160 (542)
                      .++.|.-+
T Consensus        82 al~~gk~V   89 (167)
T d1xeaa1          82 FLHLGIPT   89 (167)
T ss_dssp             HHHTTCCE
T ss_pred             cccccccc
Confidence            56666533

>d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Virulence factor MviM
species: Escherichia coli [TaxId: 562]

Probab=94.83  E-value=0.021  Score=49.85  Aligned_cols=82  Identities=13%  Similarity=0.128  Sum_probs=53.5

Q ss_pred             EEEEEcCChhHHH-HHHHHHhC-CCEEE-EEeCCchhhhh-hhcCCcee-eCHHHHhcCCcEEEEcCCCcccCCHHHHhc
Q psy4626          79 QVVLCGYGEVGKG-CCQSLKGL-GCVIY-ITEIDPICALQ-ACMDGFSV-VKLNEVIRTVDIVVTATGNKNVVTREHMDK  153 (542)
Q Consensus        79 tVvViG~G~IG~~-vA~~l~~~-Ga~Vi-v~d~dp~r~~~-A~~~G~~v-~~l~e~l~~aDvVi~atG~~~lI~~e~l~~  153 (542)
                      +++|+|+|.+|.. .+..++.. +.+++ ++|+++.++.. +...++.. .+.++++.+.|+|+.||.+..-. .-....
T Consensus         3 ri~iIG~G~~g~~~~~~~l~~~~~~~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~l~~~~D~V~I~tp~~~h~-~~~~~a   81 (164)
T d1tlta1           3 RIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESWRIPYADSLSSLAASCDAVFVHSSTASHF-DVVSTL   81 (164)
T ss_dssp             EEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHHTCCBCSSHHHHHTTCSEEEECSCTTHHH-HHHHHH
T ss_pred             EEEEEcCCHHHHHHHHHHHHhCCCcEEEEEEechhHhhhhhhhcccccccccchhhhhhcccccccccchhcc-cccccc
Confidence            6999999999975 46667655 67654 68988877654 33345543 35677788999999987532111 123445


Q ss_pred             cCCCeEEE
Q psy4626         154 MKNGCVVC  161 (542)
Q Consensus       154 mk~Gailv  161 (542)
                      ++.|.-+.
T Consensus        82 l~~gk~V~   89 (164)
T d1tlta1          82 LNAGVHVC   89 (164)
T ss_dssp             HHTTCEEE
T ss_pred             ccccceee
Confidence            66665443

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=94.78  E-value=0.016  Score=55.32  Aligned_cols=41  Identities=27%  Similarity=0.295  Sum_probs=37.2

Q ss_pred             cccCcEEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCchhhh
Q psy4626          74 MFGGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICAL  114 (542)
Q Consensus        74 ~l~GktVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~  114 (542)
                      .+.||+++|.|. |-||+.+|+.|...|++|+++++++.+..
T Consensus        22 ~l~gK~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~~~l~   63 (294)
T d1w6ua_          22 SFQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLK   63 (294)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHH
Confidence            688999999996 67999999999999999999999987654

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=94.75  E-value=0.017  Score=50.24  Aligned_cols=65  Identities=17%  Similarity=0.180  Sum_probs=45.1

Q ss_pred             EEEEEcC-ChhHHHHHHHHHhCCC--EEEEEeCCchhh-hh--hh-------cCCce--e----eCHHHHhcCCcEEEEc
Q psy4626          79 QVVLCGY-GEVGKGCCQSLKGLGC--VIYITEIDPICA-LQ--AC-------MDGFS--V----VKLNEVIRTVDIVVTA  139 (542)
Q Consensus        79 tVvViG~-G~IG~~vA~~l~~~Ga--~Viv~d~dp~r~-~~--A~-------~~G~~--v----~~l~e~l~~aDvVi~a  139 (542)
                      +|.|+|+ |.+|..+|..+...|.  ++..+|+++... .+  +.       .....  +    .+..+.+++||+||.|
T Consensus         2 KV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~d~~~l~~aDvVVit   81 (145)
T d1hyea1           2 KVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVESDENLRIIDESDVVIIT   81 (145)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETTCGGGGTTCSEEEEC
T ss_pred             EEEEECCCChHHHHHHHHHHhCCcccccccccchhhhHhhhcccccchhcccccccCCccccCCcchHHHhccceEEEEe
Confidence            6999995 9999999999999885  999999876321 11  11       11111  1    1123567899999999


Q ss_pred             CCCc
Q psy4626         140 TGNK  143 (542)
Q Consensus       140 tG~~  143 (542)
                      .|.+
T Consensus        82 AG~~   85 (145)
T d1hyea1          82 SGVP   85 (145)
T ss_dssp             CSCC
T ss_pred             cccc
Confidence            8854

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=94.72  E-value=0.015  Score=53.56  Aligned_cols=37  Identities=19%  Similarity=0.297  Sum_probs=34.1

Q ss_pred             ccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCch
Q psy4626          75 FGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPI  111 (542)
Q Consensus        75 l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~  111 (542)
                      -.+++|+|||.|+.|..+|..|+..|.+|+++|.++.
T Consensus        47 ~~~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~~   83 (233)
T d1djqa3          47 KNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEK   83 (233)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             cCCceEEEEcccHHHHHHHHHHHHhccceeeEeeccc
Confidence            4689999999999999999999999999999997663

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=94.68  E-value=0.018  Score=54.38  Aligned_cols=42  Identities=19%  Similarity=0.311  Sum_probs=37.4

Q ss_pred             cccCcEEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCchhhhh
Q psy4626          74 MFGGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQ  115 (542)
Q Consensus        74 ~l~GktVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~  115 (542)
                      .+.||+++|.|. +-||+.+|+.|...|++|+++++++.++.+
T Consensus         3 ~L~gK~alITGas~GIG~aia~~la~~G~~V~i~~r~~~~l~~   45 (258)
T d1ae1a_           3 SLKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDE   45 (258)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHH
Confidence            578999999997 569999999999999999999999876543

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=94.62  E-value=0.019  Score=54.28  Aligned_cols=43  Identities=19%  Similarity=0.280  Sum_probs=38.0

Q ss_pred             ccccCcEEEEEcCC-hhHHHHHHHHHhCCCEEEEEeCCchhhhh
Q psy4626          73 VMFGGKQVVLCGYG-EVGKGCCQSLKGLGCVIYITEIDPICALQ  115 (542)
Q Consensus        73 ~~l~GktVvViG~G-~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~  115 (542)
                      ..+.||+++|.|.+ -||+.+|+.|...|++|+++++++.++.+
T Consensus         4 f~L~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~   47 (259)
T d2ae2a_           4 WNLEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELND   47 (259)
T ss_dssp             TCCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHH
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHH
Confidence            35789999999996 59999999999999999999999876543

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.53  E-value=0.021  Score=53.03  Aligned_cols=42  Identities=17%  Similarity=0.221  Sum_probs=37.2

Q ss_pred             cccCcEEEEEcCC-hhHHHHHHHHHhCCCEEEEEeCCchhhhh
Q psy4626          74 MFGGKQVVLCGYG-EVGKGCCQSLKGLGCVIYITEIDPICALQ  115 (542)
Q Consensus        74 ~l~GktVvViG~G-~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~  115 (542)
                      .+.||+++|.|.+ -||+.+|+.|...|++|++++++..++..
T Consensus         2 slkGKvalITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~   44 (248)
T d2o23a1           2 SVKGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEA   44 (248)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSSHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHH
Confidence            4789999999996 49999999999999999999998866543

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=94.46  E-value=0.023  Score=53.07  Aligned_cols=41  Identities=20%  Similarity=0.263  Sum_probs=35.4

Q ss_pred             ccccCcEEEEEcCC---hhHHHHHHHHHhCCCEEEEEeCCchhh
Q psy4626          73 VMFGGKQVVLCGYG---EVGKGCCQSLKGLGCVIYITEIDPICA  113 (542)
Q Consensus        73 ~~l~GktVvViG~G---~IG~~vA~~l~~~Ga~Viv~d~dp~r~  113 (542)
                      ..+.||+++|.|++   -||+.+|+.|...|++|+++++++...
T Consensus         4 ~~L~gK~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~~~~~   47 (256)
T d1ulua_           4 VDLSGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLR   47 (256)
T ss_dssp             ECCTTCEEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESSGGGH
T ss_pred             cCCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCcHHHH
Confidence            35789999999974   499999999999999999999876543

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=94.45  E-value=0.017  Score=54.39  Aligned_cols=41  Identities=15%  Similarity=0.255  Sum_probs=36.9

Q ss_pred             cccCcEEEEEcCCh-hHHHHHHHHHhCCCEEEEEeCCchhhh
Q psy4626          74 MFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICAL  114 (542)
Q Consensus        74 ~l~GktVvViG~G~-IG~~vA~~l~~~Ga~Viv~d~dp~r~~  114 (542)
                      .+.||+++|.|.+. ||+.+|+.|...|++|+++++++.++.
T Consensus         6 ~l~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~   47 (260)
T d1h5qa_           6 SFVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAV   47 (260)
T ss_dssp             CCTTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTHH
T ss_pred             cCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHH
Confidence            57899999999965 999999999999999999999887654

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=94.44  E-value=0.021  Score=54.04  Aligned_cols=42  Identities=14%  Similarity=0.243  Sum_probs=37.3

Q ss_pred             cccCcEEEEEcCC-hhHHHHHHHHHhCCCEEEEEeCCchhhhh
Q psy4626          74 MFGGKQVVLCGYG-EVGKGCCQSLKGLGCVIYITEIDPICALQ  115 (542)
Q Consensus        74 ~l~GktVvViG~G-~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~  115 (542)
                      .+.||+++|.|.+ -||+.+|+.|...|++|+++++++.++.+
T Consensus         3 rL~gKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~   45 (268)
T d2bgka1           3 RLQDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQK   45 (268)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHH
Confidence            4789999999985 59999999999999999999999876554

>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Acetaldehyde dehydrogenase (acylating)
species: Pseudomonas sp. [TaxId: 306]

Probab=94.43  E-value=0.048  Score=47.88  Aligned_cols=88  Identities=19%  Similarity=0.276  Sum_probs=58.2

Q ss_pred             cEEEEEcCChhHHH-HHHHHHhCCC-EEEE-EeCCchh--hhhhhcCCceeeC--HHHHh-----cCCcEEEEcCCCc-c
Q psy4626          78 KQVVLCGYGEVGKG-CCQSLKGLGC-VIYI-TEIDPIC--ALQACMDGFSVVK--LNEVI-----RTVDIVVTATGNK-N  144 (542)
Q Consensus        78 ktVvViG~G~IG~~-vA~~l~~~Ga-~Viv-~d~dp~r--~~~A~~~G~~v~~--l~e~l-----~~aDvVi~atG~~-~  144 (542)
                      -+|+|+|+|.||.. +.+.++.+.- +++. +++++..  ...+...|..+..  .++++     .+.|+|+.+|... |
T Consensus         5 irvaIIGaG~ig~~~~~~~l~~~~~~el~avas~~~~~~~~~~a~~~~i~~~~~~~d~l~~~~~~~~iDiVf~ATpag~h   84 (157)
T d1nvmb1           5 LKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRMGVTTTYAGVEGLIKLPEFADIDFVFDATSASAH   84 (157)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHHTTCCEESSHHHHHHHSGGGGGEEEEEECSCHHHH
T ss_pred             cEEEEEcCcHHHHHHHHHHHhhCCcceEEEEEecchhccchhhhhhcCCcccccceeeeeecccccccCEEEEcCCchhH
Confidence            37999999999975 5677876644 5544 5777643  2346666765432  44332     4789999987532 3


Q ss_pred             cCCHHHHhccCCCeEEEeccC
Q psy4626         145 VVTREHMDKMKNGCVVCNMGH  165 (542)
Q Consensus       145 lI~~e~l~~mk~GailvnvG~  165 (542)
                      .-....+..++.|+.+++-+.
T Consensus        85 ~~~~~~~~aa~~G~~VID~s~  105 (157)
T d1nvmb1          85 VQNEALLRQAKPGIRLIDLTP  105 (157)
T ss_dssp             HHHHHHHHHHCTTCEEEECST
T ss_pred             HHhHHHHHHHHcCCEEEEccc
Confidence            322345677899998886664

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=94.37  E-value=0.07  Score=46.08  Aligned_cols=64  Identities=20%  Similarity=0.180  Sum_probs=42.9

Q ss_pred             EEEEEc-CChhHHHHHHHHHhCCC--EEEEEeCCchh-hhh--hhcC----Cc----ee-eCHHHHhcCCcEEEEcCCC
Q psy4626          79 QVVLCG-YGEVGKGCCQSLKGLGC--VIYITEIDPIC-ALQ--ACMD----GF----SV-VKLNEVIRTVDIVVTATGN  142 (542)
Q Consensus        79 tVvViG-~G~IG~~vA~~l~~~Ga--~Viv~d~dp~r-~~~--A~~~----G~----~v-~~l~e~l~~aDvVi~atG~  142 (542)
                      +|.|+| .|.||..+|..+...|.  ++..+|++... ..+  +...    .+    .+ ..-.+.+++||+|+.+.|.
T Consensus         2 KV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~~~~~~~~g~a~Dl~~~~~~~~~~~i~~~~~~~~~~aDiVvitaG~   80 (142)
T d1o6za1           2 KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQGGYEDTAGSDVVVITAGI   80 (142)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEECCGGGGTTCSEEEECCCC
T ss_pred             eEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecCCcccccceeecchhhcccccCCceEeeCCHHHhhhcCEEEEeccc
Confidence            799999 69999999999998886  89999975421 111  1111    01    11 1123456899999998773

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=94.33  E-value=0.012  Score=51.54  Aligned_cols=32  Identities=25%  Similarity=0.390  Sum_probs=29.2

Q ss_pred             EEEEEcCChhHHHHHHHHHhCCC-EEEEEeCCc
Q psy4626          79 QVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDP  110 (542)
Q Consensus        79 tVvViG~G~IG~~vA~~l~~~Ga-~Viv~d~dp  110 (542)
                      +|+|||+|+.|+.+|..|+..|. +|+|+|.++
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE~~~   34 (347)
T d1b5qa1           2 RVIVVGAGMSGISAAKRLSEAGITDLLILEATD   34 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHHTTCCCEEEECSSS
T ss_pred             CEEEECCcHHHHHHHHHHHhCCCCcEEEEECCC
Confidence            49999999999999999999997 699999755

>d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=94.26  E-value=0.022  Score=44.39  Aligned_cols=48  Identities=21%  Similarity=0.145  Sum_probs=40.5

Q ss_pred             ccccCcEEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCC
Q psy4626          73 VMFGGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDG  120 (542)
Q Consensus        73 ~~l~GktVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G  120 (542)
                      ...+|++|+|.|. |-+|....+.++.+|++|+++..++.+.+.....|
T Consensus        28 ~~~~~~~vlI~gasGgVG~~aiQlak~~G~~Vi~~t~s~~k~~~~~~lG   76 (77)
T d1o8ca2          28 VRPQDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEYLKSLG   76 (77)
T ss_dssp             CCGGGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHHHT
T ss_pred             hccCCCcEEEEeCCCcHHHHHHHHHHHcCCeEEEEECCHHHHHHHHHCC
Confidence            3457999999887 99999999999999999999988887776665554

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.21  E-value=0.021  Score=54.06  Aligned_cols=43  Identities=21%  Similarity=0.395  Sum_probs=38.3

Q ss_pred             cccCcEEEEEcCCh-hHHHHHHHHHhCCCEEEEEeCCchhhhhh
Q psy4626          74 MFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQA  116 (542)
Q Consensus        74 ~l~GktVvViG~G~-IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A  116 (542)
                      .+.||+++|.|++. ||+.+|+.|...|++|+++++++.++.+.
T Consensus        11 ~L~GK~alITGassGIG~aiA~~la~~G~~Vil~~r~~~~l~~~   54 (269)
T d1xu9a_          11 MLQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKV   54 (269)
T ss_dssp             GGTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             ccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence            48999999999965 99999999999999999999998776543

>d2h1qa1 c.67.3.1 (A:1-251) Hypothetical protein Dhaf_3308 {Desulfitobacterium hafniense [TaxId: 49338]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: Dhaf3308-like
family: Dhaf3308-like
domain: Hypothetical protein Dhaf 3308
species: Desulfitobacterium hafniense [TaxId: 49338]

Probab=94.18  E-value=0.032  Score=52.86  Aligned_cols=79  Identities=22%  Similarity=0.219  Sum_probs=57.4

Q ss_pred             ccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce-eeCHHHHhcCCcEEEEcCCCcccCC---HHH
Q psy4626          75 FGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVKLNEVIRTVDIVVTATGNKNVVT---REH  150 (542)
Q Consensus        75 l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~-v~~l~e~l~~aDvVi~atG~~~lI~---~e~  150 (542)
                      ..|++|+|||+-|    ....++..|+++.++|++|.       .|.. ....++++..||+||.+.-+  ++|   ...
T Consensus       120 ~~g~kV~vIG~~P----~v~~l~~~~~~~~VlE~~p~-------~gd~p~~~~~~lLp~aD~viiTGsT--lvN~Tl~~L  186 (251)
T d2h1qa1         120 VKGKKVGVVGHFP----HLESLLEPICDLSILEWSPE-------EGDYPLPASEFILPECDYVYITCAS--VVDKTLPRL  186 (251)
T ss_dssp             TTTSEEEEESCCT----THHHHHTTTSEEEEEESSCC-------TTCEEGGGHHHHGGGCSEEEEETHH--HHHTCHHHH
T ss_pred             cCCCEEEEEecch----hHHHHHhcCCcEEEEeCCCC-------CCCCCchHHHHhhhcCCEEEEEech--hhcCCHHHH
Confidence            3689999999988    44557788999999999883       2222 22346778999999875322  333   356


Q ss_pred             HhccCCCeEEEeccCC
Q psy4626         151 MDKMKNGCVVCNMGHS  166 (542)
Q Consensus       151 l~~mk~GailvnvG~g  166 (542)
                      |++.|+...++-+|-.
T Consensus       187 L~~~~~a~~vvl~GPS  202 (251)
T d2h1qa1         187 LELSRNARRITLVGPG  202 (251)
T ss_dssp             HHHTTTSSEEEEESTT
T ss_pred             HHhCCcCCEEEEECCC
Confidence            7888888888888865

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.14  E-value=0.021  Score=52.14  Aligned_cols=34  Identities=21%  Similarity=0.382  Sum_probs=31.1

Q ss_pred             CcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCc
Q psy4626          77 GKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDP  110 (542)
Q Consensus        77 GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp  110 (542)
                      -++|+|||+|.-|+.+|..|+..|.+|+|+|.++
T Consensus         5 ~~kViVIGaG~aGL~aA~~L~~~G~~V~VlEa~~   38 (449)
T d2dw4a2           5 TGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARD   38 (449)
T ss_dssp             CCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            4579999999999999999999999999999654

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=94.14  E-value=0.026  Score=53.19  Aligned_cols=40  Identities=18%  Similarity=0.346  Sum_probs=36.1

Q ss_pred             ccCcEEEEEcCC-hhHHHHHHHHHhCCCEEEEEeCCchhhh
Q psy4626          75 FGGKQVVLCGYG-EVGKGCCQSLKGLGCVIYITEIDPICAL  114 (542)
Q Consensus        75 l~GktVvViG~G-~IG~~vA~~l~~~Ga~Viv~d~dp~r~~  114 (542)
                      +.||+++|.|.+ -||+.+|+.|...|++|+++++++.++.
T Consensus         2 l~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~   42 (258)
T d1iy8a_           2 FTDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLE   42 (258)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHH
Confidence            579999999996 5999999999999999999999987654

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.13  E-value=0.027  Score=52.99  Aligned_cols=42  Identities=10%  Similarity=0.081  Sum_probs=37.5

Q ss_pred             cccCcEEEEEcCC-hhHHHHHHHHHhCCCEEEEEeCCchhhhh
Q psy4626          74 MFGGKQVVLCGYG-EVGKGCCQSLKGLGCVIYITEIDPICALQ  115 (542)
Q Consensus        74 ~l~GktVvViG~G-~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~  115 (542)
                      .+.||+++|.|.+ -||+.+|+.|...|++|+++++++.+..+
T Consensus         7 ~lk~Kv~lITGas~GIG~aiA~~la~~G~~Vv~~~r~~~~l~~   49 (257)
T d1xg5a_           7 RWRDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEE   49 (257)
T ss_dssp             GGTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHH
Confidence            4789999999996 69999999999999999999999876543

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=94.12  E-value=0.016  Score=50.42  Aligned_cols=35  Identities=23%  Similarity=0.279  Sum_probs=30.5

Q ss_pred             cCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCc
Q psy4626          76 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDP  110 (542)
Q Consensus        76 ~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp  110 (542)
                      ++++|+|+|.|++|..+|..++.+|.+|.++++++
T Consensus         2 ~~~~VvIIGgG~~G~e~A~~l~~~g~~v~v~~~~~   36 (185)
T d1q1ra1           2 ANDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGD   36 (185)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECS
T ss_pred             CCCCEEEECCcHHHHHHHHHHHHcCCceEEEEecC
Confidence            47899999999999999999999999877765554

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=94.11  E-value=0.021  Score=53.96  Aligned_cols=43  Identities=19%  Similarity=0.264  Sum_probs=38.0

Q ss_pred             ccccCcEEEEEcCC-hhHHHHHHHHHhCCCEEEEEeCCchhhhh
Q psy4626          73 VMFGGKQVVLCGYG-EVGKGCCQSLKGLGCVIYITEIDPICALQ  115 (542)
Q Consensus        73 ~~l~GktVvViG~G-~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~  115 (542)
                      ..+.||+++|.|.+ -||+.+|+.|...|++|+++++++.++.+
T Consensus         4 F~LkgK~alVTGas~GIG~aiA~~la~~Ga~V~~~~r~~~~l~~   47 (259)
T d1xq1a_           4 WSLKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNE   47 (259)
T ss_dssp             TCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHH
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHH
Confidence            35789999999996 59999999999999999999999876543

>d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glucose-fructose oxidoreductase, N-terminal domain
species: Zymomonas mobilis [TaxId: 542]

Probab=94.01  E-value=0.027  Score=51.94  Aligned_cols=83  Identities=14%  Similarity=0.101  Sum_probs=54.2

Q ss_pred             cEEEEEcCChhHHH-HHHHHHhC-CCEEE-EEeCCchhhhhh-hcCCce------eeCHHHHh--cCCcEEEEcCCCccc
Q psy4626          78 KQVVLCGYGEVGKG-CCQSLKGL-GCVIY-ITEIDPICALQA-CMDGFS------VVKLNEVI--RTVDIVVTATGNKNV  145 (542)
Q Consensus        78 ktVvViG~G~IG~~-vA~~l~~~-Ga~Vi-v~d~dp~r~~~A-~~~G~~------v~~l~e~l--~~aDvVi~atG~~~l  145 (542)
                      -+|+|||+|.+|+. .+..++.. +++|+ ++|+++.++... ...|..      +.+.++++  .+.|+|+.+|.+..-
T Consensus        34 iriaiIG~G~~~~~~~~~~~~~~~~~~ivav~d~~~~~a~~~~~~~~i~~~~~~~~~d~~ell~~~~iD~V~I~tp~~~H  113 (221)
T d1h6da1          34 FGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEYGVDPRKIYDYSNFDKIAKDPKIDAVYIILPNSLH  113 (221)
T ss_dssp             EEEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHHHTTCCGGGEECSSSGGGGGGCTTCCEEEECSCGGGH
T ss_pred             EEEEEEcCcHHHHHHHHHHHHhCCCceEEEEecCCHHHHHHHHHhhccccccccccCchhhhcccccceeeeeccchhhh
Confidence            38999999999974 55666554 67766 789999886543 333432      34678877  468999988754211


Q ss_pred             CCHHHHhccCCCeEEE
Q psy4626         146 VTREHMDKMKNGCVVC  161 (542)
Q Consensus       146 I~~e~l~~mk~Gailv  161 (542)
                      . .-....|+.|.-+.
T Consensus       114 ~-~~~~~al~~gk~v~  128 (221)
T d1h6da1         114 A-EFAIRAFKAGKHVM  128 (221)
T ss_dssp             H-HHHHHHHHTTCEEE
T ss_pred             h-hHHHHhhhcchhhh
Confidence            1 23455666665444

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=93.99  E-value=0.03  Score=53.25  Aligned_cols=41  Identities=12%  Similarity=0.253  Sum_probs=36.9

Q ss_pred             ccCcEEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCchhhhh
Q psy4626          75 FGGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQ  115 (542)
Q Consensus        75 l~GktVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~  115 (542)
                      +.||+++|.|. +-||+.+|+.|...|++|+++++++.++.+
T Consensus         3 L~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~   44 (276)
T d1bdba_           3 LKGEAVLITGGASGLGRALVDRFVAEGAKVAVLDKSAERLAE   44 (276)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHH
Confidence            67999999998 579999999999999999999999877643

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=93.96  E-value=0.015  Score=52.68  Aligned_cols=32  Identities=22%  Similarity=0.296  Sum_probs=30.0

Q ss_pred             EEEEEcCChhHHHHHHHHHhCCCEEEEEeCCc
Q psy4626          79 QVVLCGYGEVGKGCCQSLKGLGCVIYITEIDP  110 (542)
Q Consensus        79 tVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp  110 (542)
                      +|+|||.|+-|+.+|..|+..|.+|+++|.++
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~~G~~V~vlE~~~   33 (347)
T d2ivda1           2 NVAVVGGGISGLAVAHHLRSRGTDAVLLESSA   33 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHTTTCCEEEECSSS
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence            69999999999999999999999999999755

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.96  E-value=0.03  Score=53.99  Aligned_cols=42  Identities=19%  Similarity=0.283  Sum_probs=37.4

Q ss_pred             cccCcEEEEEcCC-hhHHHHHHHHHhCCCEEEEEeCCchhhhh
Q psy4626          74 MFGGKQVVLCGYG-EVGKGCCQSLKGLGCVIYITEIDPICALQ  115 (542)
Q Consensus        74 ~l~GktVvViG~G-~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~  115 (542)
                      .|.||+++|.|.+ -||+.+|+.|...|++|+++++++.++..
T Consensus         9 ~L~gKvalITGas~GIG~aia~~la~~Ga~Vvi~~r~~~~l~~   51 (297)
T d1yxma1           9 LLQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKS   51 (297)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHH
Confidence            5899999999985 59999999999999999999999876543

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=93.77  E-value=0.026  Score=53.69  Aligned_cols=41  Identities=22%  Similarity=0.345  Sum_probs=36.6

Q ss_pred             ccCcEEEEEcCC-hhHHHHHHHHHhCCCEEEEEeCCchhhhh
Q psy4626          75 FGGKQVVLCGYG-EVGKGCCQSLKGLGCVIYITEIDPICALQ  115 (542)
Q Consensus        75 l~GktVvViG~G-~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~  115 (542)
                      +.||+++|.|.+ -||+.+|+.|...|++|+++++++.++.+
T Consensus         2 L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~   43 (274)
T d1xhla_           2 FSGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEE   43 (274)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHH
Confidence            579999999995 59999999999999999999999876543

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=93.77  E-value=0.026  Score=53.54  Aligned_cols=41  Identities=20%  Similarity=0.264  Sum_probs=36.7

Q ss_pred             ccCcEEEEEcCC-hhHHHHHHHHHhCCCEEEEEeCCchhhhh
Q psy4626          75 FGGKQVVLCGYG-EVGKGCCQSLKGLGCVIYITEIDPICALQ  115 (542)
Q Consensus        75 l~GktVvViG~G-~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~  115 (542)
                      +.||+++|.|.+ -||+.+|+.|...|++|+++++++.++.+
T Consensus         3 L~gK~alVTGas~GIG~aia~~la~~Ga~V~l~~r~~~~l~~   44 (272)
T d1xkqa_           3 FSNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEE   44 (272)
T ss_dssp             TTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHH
T ss_pred             CCCCEEEEeCcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHH
Confidence            679999999985 59999999999999999999999876543

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=93.76  E-value=0.051  Score=51.36  Aligned_cols=99  Identities=20%  Similarity=0.216  Sum_probs=62.1

Q ss_pred             HHHHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhh----cCCce----eeCHHHHh--c
Q psy4626          62 SIIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQAC----MDGFS----VVKLNEVI--R  131 (542)
Q Consensus        62 s~~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~----~~G~~----v~~l~e~l--~  131 (542)
                      .+++.+.+   ...+|++|+=+|+|. |... ..++..|++|+.+|+||.....|.    ..|..    ..+..+.+  .
T Consensus       109 l~l~~l~~---~~~~g~~VLDiGcGs-G~l~-i~aa~~g~~V~gvDis~~av~~A~~na~~n~~~~~~~~~d~~~~~~~~  183 (254)
T d2nxca1         109 LALKALAR---HLRPGDKVLDLGTGS-GVLA-IAAEKLGGKALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAALPFG  183 (254)
T ss_dssp             HHHHHHHH---HCCTTCEEEEETCTT-SHHH-HHHHHTTCEEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHHGGGC
T ss_pred             HHHHHHHh---hcCccCEEEEcccch-hHHH-HHHHhcCCEEEEEECChHHHHHHHHHHHHcCCceeEEecccccccccc
Confidence            34444443   246899999999997 5433 345568999999999997654443    34433    22344443  4


Q ss_pred             CCcEEEEcCCCc---ccCCHHHHhccCCCeEEEeccCC
Q psy4626         132 TVDIVVTATGNK---NVVTREHMDKMKNGCVVCNMGHS  166 (542)
Q Consensus       132 ~aDvVi~atG~~---~lI~~e~l~~mk~GailvnvG~g  166 (542)
                      ..|+|+...-..   .++ ++..+.||||++++..|..
T Consensus       184 ~fD~V~ani~~~~l~~l~-~~~~~~LkpGG~lilSgil  220 (254)
T d2nxca1         184 PFDLLVANLYAELHAALA-PRYREALVPGGRALLTGIL  220 (254)
T ss_dssp             CEEEEEEECCHHHHHHHH-HHHHHHEEEEEEEEEEEEE
T ss_pred             ccchhhhccccccHHHHH-HHHHHhcCCCcEEEEEecc
Confidence            689887643211   111 3445678999999976643

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.72  E-value=0.036  Score=51.98  Aligned_cols=39  Identities=15%  Similarity=0.316  Sum_probs=35.2

Q ss_pred             cCcEEEEEcCC-hhHHHHHHHHHhCCCEEEEEeCCchhhh
Q psy4626          76 GGKQVVLCGYG-EVGKGCCQSLKGLGCVIYITEIDPICAL  114 (542)
Q Consensus        76 ~GktVvViG~G-~IG~~vA~~l~~~Ga~Viv~d~dp~r~~  114 (542)
                      .||+++|.|.+ -||+.+|+.|...|++|+++++++.+..
T Consensus         2 ~GKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~   41 (254)
T d2gdza1           2 NGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGV   41 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHH
Confidence            59999999995 5999999999999999999999987654

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=93.69  E-value=0.026  Score=53.20  Aligned_cols=43  Identities=21%  Similarity=0.427  Sum_probs=37.7

Q ss_pred             ccccCcEEEEEcCC-hhHHHHHHHHHhCCCEEEEEeCCchhhhh
Q psy4626          73 VMFGGKQVVLCGYG-EVGKGCCQSLKGLGCVIYITEIDPICALQ  115 (542)
Q Consensus        73 ~~l~GktVvViG~G-~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~  115 (542)
                      ..+.||+++|.|.+ -||+.+|+.|...|++|+++++++.++.+
T Consensus         7 m~L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~   50 (255)
T d1fmca_           7 LRLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANH   50 (255)
T ss_dssp             GCCTTCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHH
T ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHH
Confidence            35789999999995 59999999999999999999998876543

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.66  E-value=0.018  Score=53.97  Aligned_cols=33  Identities=30%  Similarity=0.183  Sum_probs=30.9

Q ss_pred             EEEEEcCChhHHHHHHHHHhCCCEEEEEeCCch
Q psy4626          79 QVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPI  111 (542)
Q Consensus        79 tVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~  111 (542)
                      .|+|+|+|+.|+.+|..|+..|.+|.++|.+|.
T Consensus         4 ~V~IvGaGp~Gl~~A~~L~~~G~~v~vlE~~~~   36 (292)
T d1k0ia1           4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQTP   36 (292)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHTCCEEEECSSCH
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            599999999999999999999999999998764

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.57  E-value=0.033  Score=50.81  Aligned_cols=32  Identities=22%  Similarity=0.440  Sum_probs=29.8

Q ss_pred             EEEEEcCChhHHHHHHHHHhCCC-EEEEEeCCc
Q psy4626          79 QVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDP  110 (542)
Q Consensus        79 tVvViG~G~IG~~vA~~l~~~Ga-~Viv~d~dp  110 (542)
                      +|+|||+|+.|+.+|..|+..|. +|.|+|.++
T Consensus         3 ~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~   35 (288)
T d3c96a1           3 DILIAGAGIGGLSCALALHQAGIGKVTLLESSS   35 (288)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEEESSS
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCC
Confidence            69999999999999999999996 999999765

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=93.55  E-value=0.036  Score=51.44  Aligned_cols=39  Identities=18%  Similarity=0.354  Sum_probs=34.3

Q ss_pred             cccCcEEEEEcCCh---hHHHHHHHHHhCCCEEEEEeCCchh
Q psy4626          74 MFGGKQVVLCGYGE---VGKGCCQSLKGLGCVIYITEIDPIC  112 (542)
Q Consensus        74 ~l~GktVvViG~G~---IG~~vA~~l~~~Ga~Viv~d~dp~r  112 (542)
                      .+.||+++|.|.+.   ||+.+|+.|...|++|+++++++..
T Consensus         2 ~L~gK~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~~~   43 (258)
T d1qsga_           2 FLSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKL   43 (258)
T ss_dssp             TTTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTTT
T ss_pred             cCCCCEEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence            47899999999764   8899999999999999999988653

>d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=93.46  E-value=0.031  Score=52.88  Aligned_cols=39  Identities=23%  Similarity=0.380  Sum_probs=34.7

Q ss_pred             ccccCcEEEEEcCC---hhHHHHHHHHHhCCCEEEEEeCCch
Q psy4626          73 VMFGGKQVVLCGYG---EVGKGCCQSLKGLGCVIYITEIDPI  111 (542)
Q Consensus        73 ~~l~GktVvViG~G---~IG~~vA~~l~~~Ga~Viv~d~dp~  111 (542)
                      ..+.||+++|.|.+   -||+.+|+.|...|++|+++++++.
T Consensus         4 ~~L~gK~alVTGass~~GIG~aiA~~la~~Ga~Vvi~~~~~~   45 (297)
T d1d7oa_           4 IDLRGKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWVPA   45 (297)
T ss_dssp             CCCTTCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEEEHHH
T ss_pred             cCCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCchh
Confidence            46899999999986   5999999999999999999987653

>d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0312
species: Thermotoga maritima [TaxId: 2336]

Probab=93.45  E-value=0.061  Score=47.57  Aligned_cols=82  Identities=20%  Similarity=0.140  Sum_probs=53.2

Q ss_pred             EEEEEcCChhHHH-HHHHHHhCC--CEEE-EEeCCchhhhhh-hcCCce--eeCHHHHh--cCCcEEEEcCCCcccCCHH
Q psy4626          79 QVVLCGYGEVGKG-CCQSLKGLG--CVIY-ITEIDPICALQA-CMDGFS--VVKLNEVI--RTVDIVVTATGNKNVVTRE  149 (542)
Q Consensus        79 tVvViG~G~IG~~-vA~~l~~~G--a~Vi-v~d~dp~r~~~A-~~~G~~--v~~l~e~l--~~aDvVi~atG~~~lI~~e  149 (542)
                      +++|+|+|.+|+. .+..++..+  .+++ ++|+++.++... ...+..  +.+.++++  ...|+|+.||.+..-. .-
T Consensus         5 rigiIG~G~~g~~~h~~~l~~~~~~~~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~ell~~~~id~v~I~tp~~~h~-~~   83 (181)
T d1zh8a1           5 RLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVGNPAVFDSYEELLESGLVDAVDLTLPVELNL-PF   83 (181)
T ss_dssp             EEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHHSSCEEESCHHHHHHSSCCSEEEECCCGGGHH-HH
T ss_pred             EEEEEcCCHHHHHHHHHHHHhCCCCeEEEEEEeccHhhhhhhhccccccceeeeeeccccccccceeeccccccccc-cc
Confidence            7999999999986 477777654  3655 689998876542 333432  45788887  4689999987542111 22


Q ss_pred             HHhccCCCeEEE
Q psy4626         150 HMDKMKNGCVVC  161 (542)
Q Consensus       150 ~l~~mk~Gailv  161 (542)
                      ....++.|.-+.
T Consensus        84 ~~~al~~gk~V~   95 (181)
T d1zh8a1          84 IEKALRKGVHVI   95 (181)
T ss_dssp             HHHHHHTTCEEE
T ss_pred             cccccccchhhh
Confidence            344556665443

>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

Probab=93.45  E-value=0.091  Score=46.52  Aligned_cols=66  Identities=21%  Similarity=0.230  Sum_probs=44.9

Q ss_pred             CcEEEEEcCChhHHHHH---HHHH--hC-CCEEEEEeCCchhhhhh--------hcCCc--e---eeCHHHHhcCCcEEE
Q psy4626          77 GKQVVLCGYGEVGKGCC---QSLK--GL-GCVIYITEIDPICALQA--------CMDGF--S---VVKLNEVIRTVDIVV  137 (542)
Q Consensus        77 GktVvViG~G~IG~~vA---~~l~--~~-Ga~Viv~d~dp~r~~~A--------~~~G~--~---v~~l~e~l~~aDvVi  137 (542)
                      +.+++|+|.|.+|...+   ..++  .+ +-++..+|+|+.++...        ...+.  .   ..+.++++++||+|+
T Consensus         2 ~mKI~iIGaGsvg~t~~~~~~l~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~i~~~td~~eaL~dad~Vv   81 (171)
T d1obba1           2 SVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFEKTMNLDDVIIDADFVI   81 (171)
T ss_dssp             CCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSEEE
T ss_pred             CcEEEEECCCHHHhHHHHHHHHHhccccCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCCeEEEEeCChhhcccCCCeEe
Confidence            56899999999995532   2332  33 35999999999875421        11222  2   246788999999999


Q ss_pred             EcCCC
Q psy4626         138 TATGN  142 (542)
Q Consensus       138 ~atG~  142 (542)
                      .+.+.
T Consensus        82 ~~~~~   86 (171)
T d1obba1          82 NTAMV   86 (171)
T ss_dssp             ECCCT
T ss_pred             eeccc
Confidence            98653

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=93.42  E-value=0.044  Score=51.25  Aligned_cols=38  Identities=21%  Similarity=0.342  Sum_probs=33.9

Q ss_pred             cccCcEEEEEcC-C--hhHHHHHHHHHhCCCEEEEEeCCch
Q psy4626          74 MFGGKQVVLCGY-G--EVGKGCCQSLKGLGCVIYITEIDPI  111 (542)
Q Consensus        74 ~l~GktVvViG~-G--~IG~~vA~~l~~~Ga~Viv~d~dp~  111 (542)
                      .+.||+++|.|. |  -||+.+|+.|...|++|+++++++.
T Consensus         2 ~L~gK~alITGaag~~GIG~AiA~~la~~Ga~V~i~~r~~~   42 (274)
T d2pd4a1           2 FLKGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNES   42 (274)
T ss_dssp             TTTTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTT
T ss_pred             cCCCCEEEEECCCCCcHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            478999999996 4  4999999999999999999998763

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=93.39  E-value=0.037  Score=53.50  Aligned_cols=35  Identities=20%  Similarity=0.257  Sum_probs=32.1

Q ss_pred             CcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCch
Q psy4626          77 GKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPI  111 (542)
Q Consensus        77 GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~  111 (542)
                      .|+|+|||+|..|..+|..|+..|.+|+++|.++.
T Consensus         2 ~KKI~IIGaG~sGL~aA~~L~k~G~~V~viEk~~~   36 (314)
T d2bi7a1           2 SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDH   36 (314)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSS
T ss_pred             CCEEEEECCcHHHHHHHHHHHhCCCCEEEEECCCC
Confidence            57999999999999999999999999999997653

>d1pvva2 c.78.1.1 (A:151-313) Ornithine transcarbamoylase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=93.34  E-value=0.33  Score=42.26  Aligned_cols=101  Identities=17%  Similarity=0.242  Sum_probs=68.9

Q ss_pred             ccCcEEEEEcCC-hhHHHHHHHHHhCCCEEEEEeCCchhh-----hhh----hcCC--ce-eeCHHHHhcCCcEEEEcC-
Q psy4626          75 FGGKQVVLCGYG-EVGKGCCQSLKGLGCVIYITEIDPICA-----LQA----CMDG--FS-VVKLNEVIRTVDIVVTAT-  140 (542)
Q Consensus        75 l~GktVvViG~G-~IG~~vA~~l~~~Ga~Viv~d~dp~r~-----~~A----~~~G--~~-v~~l~e~l~~aDvVi~at-  140 (542)
                      +.|.+|+++|-| ++....+..+..+|+++.++-+.....     ..+    ...+  +. ..+++++++++|+|.... 
T Consensus         2 l~gl~Ia~VGD~~nv~~Sli~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ea~~~adviy~~~~   81 (163)
T d1pvva2           2 IKGVKVVYVGDGNNVAHSLMIAGTKLGADVVVATPEGYEPDEKVIKWAEQNAAESGGSFELLHDPVKAVKDADVIYTDVW   81 (163)
T ss_dssp             CTTCEEEEESCCCHHHHHHHHHHHHTTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCEEEEESCHHHHTTTCSEEEECCC
T ss_pred             cCCCEEEEECCCcHHHHHHHHHHHHcCCeEEEecccccCCChHHHHHHHHhhhcccceEEEecCHHHHhhhccEEeecce
Confidence            679999999986 466888899999999999985422111     111    1111  12 346889999999999853 


Q ss_pred             ---C------------CcccCCHHHHhccCCCeEEEeccCC--CcccChHhh
Q psy4626         141 ---G------------NKNVVTREHMDKMKNGCVVCNMGHS--NTEIDVNSL  175 (542)
Q Consensus       141 ---G------------~~~lI~~e~l~~mk~GailvnvG~g--~~eid~~aL  175 (542)
                         +            ....++.+.++.+|+.+++.-.+-.  ..||+-+-.
T Consensus        82 ~~~~~~~~~~~~~~~~~~y~v~~~~l~~ak~~~iimHplP~~Rg~EI~~~v~  133 (163)
T d1pvva2          82 ASMGQEAEAEERRKIFRPFQVNKDLVKHAKPDYMFMHCLPAHRGEEVTDDVI  133 (163)
T ss_dssp             CCSSTTSSSSHHHHHHGGGCBCHHHHHTSCTTCEEEECSCCCBTTTBCHHHH
T ss_pred             eecccchhhHHHHHHhhhhhHHHHHHHhhCCCeEEecCCccccccccchhhh
Confidence               1            1235667888999999999877763  355554433

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.31  E-value=0.03  Score=48.93  Aligned_cols=31  Identities=16%  Similarity=0.033  Sum_probs=29.5

Q ss_pred             EEEEcCChhHHHHHHHHHhCCCEEEEEeCCc
Q psy4626          80 VVLCGYGEVGKGCCQSLKGLGCVIYITEIDP  110 (542)
Q Consensus        80 VvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp  110 (542)
                      |+|||+|..|..+|..|...|.+|.|+|.++
T Consensus         8 viViGaG~~Gl~~A~~La~~G~~V~vlE~~~   38 (297)
T d2bcgg1           8 VIVLGTGITECILSGLLSVDGKKVLHIDKQD   38 (297)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCCCEEEEcCCC
Confidence            8999999999999999999999999999765

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=93.26  E-value=0.035  Score=52.26  Aligned_cols=41  Identities=17%  Similarity=0.235  Sum_probs=36.6

Q ss_pred             ccCcEEEEEcCC-hhHHHHHHHHHhCCCEEEEEeCCchhhhh
Q psy4626          75 FGGKQVVLCGYG-EVGKGCCQSLKGLGCVIYITEIDPICALQ  115 (542)
Q Consensus        75 l~GktVvViG~G-~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~  115 (542)
                      +.||+++|.|.+ -||+.+|+.|...|++|+++++++.++.+
T Consensus         3 l~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~   44 (264)
T d1spxa_           3 FAEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEE   44 (264)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHH
T ss_pred             CCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHH
Confidence            689999999984 69999999999999999999998876543

>d1pj3a1 c.2.1.7 (A:280-573) Mitochondrial NAD(P)-dependent malic enzyme {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.18  E-value=0.12  Score=49.82  Aligned_cols=99  Identities=9%  Similarity=0.130  Sum_probs=68.4

Q ss_pred             hhcCccccCcEEEEEcCChhHHHHHHHHHhCCC-----------EEEEEeCCch----h--------hhhhhcCC-ceee
Q psy4626          69 RSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGC-----------VIYITEIDPI----C--------ALQACMDG-FSVV  124 (542)
Q Consensus        69 r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga-----------~Viv~d~dp~----r--------~~~A~~~G-~~v~  124 (542)
                      |.++..+..-+++|+|+|.-|.++|..+...++           +++++|..-.    |        ...+.... ....
T Consensus        17 ki~gk~l~d~kiv~~GAGsAg~gia~ll~~~~~~~g~~~~~a~~~i~lvD~~Glv~~~r~~~~~~~k~~~a~~~~~~~~~   96 (294)
T d1pj3a1          17 KVISKPISEHKILFLGAGEAALGIANLIVMSMVENGLSEQEAQKKIWMFDKYGLLVKGRKAKIDSYQEPFTHSAPESIPD   96 (294)
T ss_dssp             HHHCCCGGGCCEEEECCSHHHHHHHHHHHHHHHHTTCCHHHHHHTEEEEETTEECBTTCSSCCCTTTGGGCBCCCSSCCS
T ss_pred             HHhCCCHHHcEEEEECccHHHHHHHHHHHHHHHhcCCchhhccccEEEEeCCCCccCCCCcccHHHHHHhhccccccchh
Confidence            345667888899999999999999988765543           4899886431    1        11111100 0113


Q ss_pred             CHHHHhc--CCcEEEEcCCCcccCCHHHHhcc---CCCeEEEeccCCC
Q psy4626         125 KLNEVIR--TVDIVVTATGNKNVVTREHMDKM---KNGCVVCNMGHSN  167 (542)
Q Consensus       125 ~l~e~l~--~aDvVi~atG~~~lI~~e~l~~m---k~GailvnvG~g~  167 (542)
                      ++.++++  ++|++|-++|..++++++.++.|   .+.-++.-.+...
T Consensus        97 ~L~e~i~~~kptvliG~S~~~g~ft~evi~~Ma~~~~~PIIFaLSNPt  144 (294)
T d1pj3a1          97 TFEDAVNILKPSTIIGVAGAGRLFTPDVIRAMASINERPVIFALSNPT  144 (294)
T ss_dssp             SHHHHHHHHCCSEEEECCCSSCCSCHHHHHHHHHHCSSCEEEECCSSG
T ss_pred             HHHHHHHhcCCceEEEecCCCCcCCHHHHHHHHhcCCCcEEEEccCCC
Confidence            5777764  89999999998889998887655   4777887777654

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=93.15  E-value=0.057  Score=46.32  Aligned_cols=38  Identities=18%  Similarity=0.069  Sum_probs=34.3

Q ss_pred             cccCcEEEEE--cCChhHHHHHHHHHhCCCEEEEEeCCch
Q psy4626          74 MFGGKQVVLC--GYGEVGKGCCQSLKGLGCVIYITEIDPI  111 (542)
Q Consensus        74 ~l~GktVvVi--G~G~IG~~vA~~l~~~Ga~Viv~d~dp~  111 (542)
                      ...++.|+|+  |.|.||..+|..|+.+|++|+++++++.
T Consensus        36 ~~~~~~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~~   75 (156)
T d1djqa2          36 KKIGKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHL   75 (156)
T ss_dssp             SCCCSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSCT
T ss_pred             cccCCceEEEecCCChHHHHHHHHHHHcCCeEEEEecCCc
Confidence            4678899998  8899999999999999999999998764

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=93.10  E-value=0.037  Score=50.12  Aligned_cols=33  Identities=24%  Similarity=0.222  Sum_probs=29.1

Q ss_pred             EEEEEcCChhHHHHHHHHH--hCCCEEEEEeCCch
Q psy4626          79 QVVLCGYGEVGKGCCQSLK--GLGCVIYITEIDPI  111 (542)
Q Consensus        79 tVvViG~G~IG~~vA~~l~--~~Ga~Viv~d~dp~  111 (542)
                      +|+|||.||.|..+|..|+  .+|.+|+++|..|.
T Consensus         3 kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~   37 (230)
T d1cjca2           3 QICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLV   37 (230)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSS
T ss_pred             eEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCC
Confidence            7999999999999999885  46889999998764

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=93.08  E-value=0.024  Score=50.15  Aligned_cols=36  Identities=8%  Similarity=-0.018  Sum_probs=32.2

Q ss_pred             cCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCch
Q psy4626          76 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPI  111 (542)
Q Consensus        76 ~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~  111 (542)
                      +++.|+|||.||.|...|..|..+|++|+++|..+.
T Consensus         4 k~~dVvIIGGGpaGl~AA~~~ar~g~~v~iie~~~~   39 (190)
T d1trba1           4 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEK   39 (190)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHTTTCCCEEECCSST
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEEeecc
Confidence            467899999999999999999999999999986543

>d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Thermotoga maritima [TaxId: 2336]

Probab=93.04  E-value=0.037  Score=48.66  Aligned_cols=66  Identities=12%  Similarity=0.003  Sum_probs=44.5

Q ss_pred             EEEEEcCChhHHHHHHH--HHhC----CCEEEEEeCCchhhhhhhc-------CCce---eeCHHHHhcCCcEEEEcCCC
Q psy4626          79 QVVLCGYGEVGKGCCQS--LKGL----GCVIYITEIDPICALQACM-------DGFS---VVKLNEVIRTVDIVVTATGN  142 (542)
Q Consensus        79 tVvViG~G~IG~~vA~~--l~~~----Ga~Viv~d~dp~r~~~A~~-------~G~~---v~~l~e~l~~aDvVi~atG~  142 (542)
                      +++|+|.|.+|...+..  ++..    +-++..+|+|+.++..+..       ....   ..+.++.+++||+||.+.|.
T Consensus         2 KIaiIGaGs~g~~~~~~~l~~~~~~~~~~el~L~Did~~k~~~~~d~~~~~~~~~~~~~~t~~~~~~l~~aDvVVita~~   81 (162)
T d1up7a1           2 RIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDFVKRLVKDRFKVLISDTFEGAVVDAKYVIFQFRP   81 (162)
T ss_dssp             EEEEETTTCTTHHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHHHHHHHHHHTTSSEEEECSSHHHHHTTCSEEEECCCT
T ss_pred             EEEEECCCHHHHHHHHHHHHhcccccCccEEEEEecCcHHHHHHHHHHHhhhccCceEEEecCcccccCCCCEEEEeccc
Confidence            69999999998555432  2222    3589999999987653321       1222   13456788999999998875


Q ss_pred             cc
Q psy4626         143 KN  144 (542)
Q Consensus       143 ~~  144 (542)
                      +.
T Consensus        82 ~~   83 (162)
T d1up7a1          82 GG   83 (162)
T ss_dssp             TH
T ss_pred             CC
Confidence            43

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=93.03  E-value=0.13  Score=41.18  Aligned_cols=68  Identities=21%  Similarity=0.237  Sum_probs=49.1

Q ss_pred             ccCcEEEEEcCChhH-HHHHHHHHhCCCEEEEEeCCchhh-hhhhcCCceee--CHHHHhcCCcEEEEcCCC
Q psy4626          75 FGGKQVVLCGYGEVG-KGCCQSLKGLGCVIYITEIDPICA-LQACMDGFSVV--KLNEVIRTVDIVVTATGN  142 (542)
Q Consensus        75 l~GktVvViG~G~IG-~~vA~~l~~~Ga~Viv~d~dp~r~-~~A~~~G~~v~--~l~e~l~~aDvVi~atG~  142 (542)
                      ...+++-++|-|-+| .++|+.|+..|.+|..+|..+... ......|..+.  ...+.+.++|+||-.++-
T Consensus         6 ~~~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~~~~~~~~L~~~Gi~v~~g~~~~~i~~~d~vV~S~AI   77 (96)
T d1p3da1           6 RRVQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIADGVVTQRLAQAGAKIYIGHAEEHIEGASVVVVSSAI   77 (96)
T ss_dssp             TTCCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCCSHHHHHHHHTTCEEEESCCGGGGTTCSEEEECTTS
T ss_pred             hhCCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCCCChhhhHHHHCCCeEEECCccccCCCCCEEEECCCc
Confidence            457899999999999 566999999999999999864322 22334576543  223446788888877653

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=92.97  E-value=0.036  Score=49.68  Aligned_cols=31  Identities=16%  Similarity=0.103  Sum_probs=29.1

Q ss_pred             EEEEcCChhHHHHHHHHHhCCCEEEEEeCCc
Q psy4626          80 VVLCGYGEVGKGCCQSLKGLGCVIYITEIDP  110 (542)
Q Consensus        80 VvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp  110 (542)
                      |+|||.|+.|..+|..|+.+|.+|.++|.++
T Consensus         5 vvVIG~G~aG~~aA~~a~~~G~kV~iiE~~~   35 (217)
T d1gesa1           5 YIAIGGGSGGIASINRAAMYGQKCALIEAKE   35 (217)
T ss_dssp             EEEECCSHHHHHHHHHHHTTTCCEEEEESSC
T ss_pred             EEEECCCHHHHHHHHHHHHCCCEEEEEeccC
Confidence            8999999999999999999999999999653

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=92.87  E-value=0.14  Score=40.62  Aligned_cols=65  Identities=14%  Similarity=0.163  Sum_probs=47.0

Q ss_pred             cEEEEEcCChhH-HHHHHHHHhCCCEEEEEeCCchhhh-hhhcCCceeeC--HHHHhcCCcEEEEcCCC
Q psy4626          78 KQVVLCGYGEVG-KGCCQSLKGLGCVIYITEIDPICAL-QACMDGFSVVK--LNEVIRTVDIVVTATGN  142 (542)
Q Consensus        78 ktVvViG~G~IG-~~vA~~l~~~Ga~Viv~d~dp~r~~-~A~~~G~~v~~--l~e~l~~aDvVi~atG~  142 (542)
                      .++-++|-|-+| .++|+.|+..|..|..+|..+.... .-...|..+..  -.+-+.++|+||-.++-
T Consensus         2 ~~ihfiGIgG~GMs~LA~~L~~~G~~VsGSD~~~~~~t~~L~~~Gi~i~~gh~~~~i~~~d~vV~SsAI   70 (89)
T d1j6ua1           2 MKIHFVGIGGIGMSAVALHEFSNGNDVYGSNIEETERTAYLRKLGIPIFVPHSADNWYDPDLVIKTPAV   70 (89)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEECSSCCHHHHHHHHTTCCEESSCCTTSCCCCSEEEECTTC
T ss_pred             cEEEEEeECHHHHHHHHHHHHhCCCeEEEEeCCCChhHHHHHHCCCeEEeeecccccCCCCEEEEecCc
Confidence            468899999999 5889999999999999998764332 22345665432  22345778988887653

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=92.86  E-value=0.042  Score=51.57  Aligned_cols=37  Identities=24%  Similarity=0.399  Sum_probs=33.5

Q ss_pred             ccCcEEEEEcCCh-hHHHHHHHHHhCCCEEEEEeCCch
Q psy4626          75 FGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPI  111 (542)
Q Consensus        75 l~GktVvViG~G~-IG~~vA~~l~~~Ga~Viv~d~dp~  111 (542)
                      +.||+++|.|.+. ||+.+|+.|...|++|+++++++.
T Consensus         2 L~gK~alITGas~GIG~aiA~~la~~Ga~V~~~~r~~~   39 (260)
T d1x1ta1           2 LKGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDA   39 (260)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSCH
T ss_pred             CCcCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCcH
Confidence            6799999999965 999999999999999999998753

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=92.79  E-value=0.038  Score=47.98  Aligned_cols=32  Identities=16%  Similarity=0.123  Sum_probs=29.2

Q ss_pred             EEEEEcCChhHHHHHHHHHhCCCEEEEEeCCc
Q psy4626          79 QVVLCGYGEVGKGCCQSLKGLGCVIYITEIDP  110 (542)
Q Consensus        79 tVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp  110 (542)
                      -|+|||.||+|..+|..+..+|++|+++|.++
T Consensus         3 DViIIGgGpaGl~AAi~aar~G~~v~iie~~~   34 (184)
T d1fl2a1           3 DVLIVGSGPAGAAAAIYSARKGIRTGLMGERF   34 (184)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCCEEEECSST
T ss_pred             cEEEECcCHHHHHHHHHHHHcCCeEEEEEEec
Confidence            38999999999999999999999999998654

>d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=92.75  E-value=0.13  Score=45.25  Aligned_cols=65  Identities=12%  Similarity=0.086  Sum_probs=41.9

Q ss_pred             EEEEEcCChhH--HHHHHHHHhC---C-CEEEEEeCCchhhh-hhh---------cCCce-----eeCHHHHhcCCcEEE
Q psy4626          79 QVVLCGYGEVG--KGCCQSLKGL---G-CVIYITEIDPICAL-QAC---------MDGFS-----VVKLNEVIRTVDIVV  137 (542)
Q Consensus        79 tVvViG~G~IG--~~vA~~l~~~---G-a~Viv~d~dp~r~~-~A~---------~~G~~-----v~~l~e~l~~aDvVi  137 (542)
                      ++.|+|+|.+|  ..++..++..   . .++..+|+++.+.. ++.         ..+..     ..+..++++++|+||
T Consensus         3 KI~iIGaGs~~~~~~~~~l~~~~~~~~~~eI~L~Di~e~~~~~~~~d~~~~~~~~~~~~~~~~~~~td~~~al~gaDvVv   82 (169)
T d1s6ya1           3 KIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHLTLDRRRALDGADFVT   82 (169)
T ss_dssp             EEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSEEE
T ss_pred             EEEEECCChhhHHHHHHHHHHhccccCCCEEEEEcCCccHHHHHHHHHHHHHHHHhcCCCceeeecCCchhhcCCCCEEE
Confidence            79999999887  3444444432   2 38999999885421 111         11222     245677889999999


Q ss_pred             EcCCCc
Q psy4626         138 TATGNK  143 (542)
Q Consensus       138 ~atG~~  143 (542)
                      .+.|..
T Consensus        83 ~ta~~~   88 (169)
T d1s6ya1          83 TQFRVG   88 (169)
T ss_dssp             ECCCTT
T ss_pred             EccccC
Confidence            988743

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=92.59  E-value=0.073  Score=47.39  Aligned_cols=40  Identities=15%  Similarity=0.464  Sum_probs=34.2

Q ss_pred             ehhhhcccCcEEEE---ccC--CCCccCHhHHhcCCCCcEEEccC
Q psy4626         303 KLNEVIRTVDIVVT---ATG--NKNVVTREHMDKMKNGCVVCNMG  342 (542)
Q Consensus       303 ~~~~a~~~~d~~~t---~tg--~~~vi~~~~~~~mk~gail~n~g  342 (542)
                      .++++++++|+||+   ..|  .+.+|+++.++.||+|++++...
T Consensus        88 ~l~~~~~~aDivI~aalipG~~aP~lIt~~mv~~Mk~GSVIVDva  132 (168)
T d1pjca1          88 EIETAVAEADLLIGAVLVPGRRAPILVPASLVEQMRTGSVIVDVA  132 (168)
T ss_dssp             HHHHHHHTCSEEEECCCCTTSSCCCCBCHHHHTTSCTTCEEEETT
T ss_pred             hHHHhhccCcEEEEeeecCCcccCeeecHHHHhhcCCCcEEEEee
Confidence            46899999999999   344  46899999999999999998654

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=92.55  E-value=0.075  Score=48.54  Aligned_cols=87  Identities=17%  Similarity=0.153  Sum_probs=57.6

Q ss_pred             cccCcEEEEEcCChhHHHHHHHHHhC--CCEEEEEeCCchhhhhhhc----CCce---ee--CHHHHh---cCCcEEEEc
Q psy4626          74 MFGGKQVVLCGYGEVGKGCCQSLKGL--GCVIYITEIDPICALQACM----DGFS---VV--KLNEVI---RTVDIVVTA  139 (542)
Q Consensus        74 ~l~GktVvViG~G~IG~~vA~~l~~~--Ga~Viv~d~dp~r~~~A~~----~G~~---v~--~l~e~l---~~aDvVi~a  139 (542)
                      .-+|++|+-+|+|. |...+..++..  +.+|+.+|+++.....|..    .+..   ..  +..+.+   ...|+|+.+
T Consensus        73 l~~g~~VLdiG~Gt-G~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~~~~~~~~~fD~I~~~  151 (213)
T d1dl5a1          73 LDKGMRVLEIGGGT-GYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFSPYDVIFVT  151 (213)
T ss_dssp             CCTTCEEEEECCTT-SHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEEEEEC
T ss_pred             ccccceEEEecCcc-chhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccccccccCchHHccccccchhhhhhh
Confidence            35799999999998 65555555544  4699999999976654432    2322   11  222222   347998876


Q ss_pred             CCCcccCCHHHHhccCCCeEEEe
Q psy4626         140 TGNKNVVTREHMDKMKNGCVVCN  162 (542)
Q Consensus       140 tG~~~lI~~e~l~~mk~Gailvn  162 (542)
                      .+..++ ..+.++.||+||+++-
T Consensus       152 ~~~~~~-p~~l~~~LkpGG~lv~  173 (213)
T d1dl5a1         152 VGVDEV-PETWFTQLKEGGRVIV  173 (213)
T ss_dssp             SBBSCC-CHHHHHHEEEEEEEEE
T ss_pred             ccHHHh-HHHHHHhcCCCcEEEE
Confidence            654444 3578899999998864

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=92.54  E-value=0.042  Score=50.02  Aligned_cols=31  Identities=16%  Similarity=0.212  Sum_probs=29.3

Q ss_pred             EEEEcCChhHHHHHHHHHhCCCEEEEEeCCc
Q psy4626          80 VVLCGYGEVGKGCCQSLKGLGCVIYITEIDP  110 (542)
Q Consensus        80 VvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp  110 (542)
                      |+|||.|+.|..+|..|+..|.+|+++|.++
T Consensus         5 ViIIGaG~aGl~aA~~la~~G~~V~liEk~~   35 (251)
T d2i0za1           5 VIVIGGGPSGLMAAIGAAEEGANVLLLDKGN   35 (251)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            8999999999999999999999999999765

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=92.50  E-value=0.2  Score=43.92  Aligned_cols=64  Identities=17%  Similarity=0.103  Sum_probs=43.6

Q ss_pred             cEEEEEcC-ChhHHHHHHHHHhCCCE--EEEEeCCchhhhhhhcCCcee-----eC---HHHHhcCCcEEEEcCCC
Q psy4626          78 KQVVLCGY-GEVGKGCCQSLKGLGCV--IYITEIDPICALQACMDGFSV-----VK---LNEVIRTVDIVVTATGN  142 (542)
Q Consensus        78 ktVvViG~-G~IG~~vA~~l~~~Ga~--Viv~d~dp~r~~~A~~~G~~v-----~~---l~e~l~~aDvVi~atG~  142 (542)
                      +||+|+|. |.||+.+++.|...|.+  |+...++|.+.... ..+...     .+   ..++++++|.|+.+.+.
T Consensus         4 ~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~~~R~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~d~vi~~a~~   78 (252)
T d2q46a1           4 PTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKI-GGEADVFIGDITDADSINPAFQGIDALVILTSA   78 (252)
T ss_dssp             CEEEEESTTSTTHHHHHHHHHHTTTTCEEEEEESCHHHHHHT-TCCTTEEECCTTSHHHHHHHHTTCSEEEECCCC
T ss_pred             CEEEEECCccHHHHHHHHHHHHCCCcEEEEEEcCCHHHHHhc-cCCcEEEEeeeccccccccccccceeeEEEEee
Confidence            58999995 99999999999999964  55556666554321 222222     12   24567889999987653

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=92.45  E-value=0.038  Score=49.40  Aligned_cols=31  Identities=26%  Similarity=0.165  Sum_probs=28.8

Q ss_pred             EEEEcCChhHHHHHHHHHhCCCEEEEEeCCc
Q psy4626          80 VVLCGYGEVGKGCCQSLKGLGCVIYITEIDP  110 (542)
Q Consensus        80 VvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp  110 (542)
                      |+|||.||.|..+|..+..+|.+|+++|..+
T Consensus         6 vvVIGgGpaGl~aA~~aa~~G~kV~vie~~~   36 (221)
T d1dxla1           6 VVIIGGGPGGYVAAIKAAQLGFKTTCIEKRG   36 (221)
T ss_dssp             EEEECCSHHHHHHHHHHHHHTCCEEEEECSS
T ss_pred             EEEECCCHHHHHHHHHHHHCCCcEEEEEecC
Confidence            8999999999999999999999999998543

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=92.28  E-value=0.047  Score=50.36  Aligned_cols=32  Identities=19%  Similarity=0.142  Sum_probs=29.9

Q ss_pred             EEEEEcCChhHHHHHHHHHhCCCEEEEEeCCc
Q psy4626          79 QVVLCGYGEVGKGCCQSLKGLGCVIYITEIDP  110 (542)
Q Consensus        79 tVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp  110 (542)
                      -|+|||.|.+|..+|..|...|.+|+++|.++
T Consensus         6 DvvIIGaGi~Gls~A~~La~~G~~V~vlE~~~   37 (276)
T d1ryia1           6 EAVVIGGGIIGSAIAYYLAKENKNTALFESGT   37 (276)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            49999999999999999999999999999765

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.14  E-value=0.13  Score=46.88  Aligned_cols=68  Identities=16%  Similarity=0.213  Sum_probs=48.4

Q ss_pred             ccCcEEEEEcC-ChhHHHHHHHHHhCCC--EEEEEeCCchhhhhhhcCC--ceeeC------HHHHhcCCcEEEEcCCC
Q psy4626          75 FGGKQVVLCGY-GEVGKGCCQSLKGLGC--VIYITEIDPICALQACMDG--FSVVK------LNEVIRTVDIVVTATGN  142 (542)
Q Consensus        75 l~GktVvViG~-G~IG~~vA~~l~~~Ga--~Viv~d~dp~r~~~A~~~G--~~v~~------l~e~l~~aDvVi~atG~  142 (542)
                      ..+++|+|+|+ |-||+.+++.|...|-  +|++..++|.....-....  ....+      +.++++++|+++.+.|.
T Consensus        12 m~~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~~~~~~~~~~i~~~~~D~~~~~~~~~~~~~~d~vi~~~~~   90 (232)
T d2bkaa1          12 MQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYKNVNQEVVDFEKLDDYASAFQGHDVGFCCLGT   90 (232)
T ss_dssp             HTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGGGGGCEEEECCGGGGGGGGGGGSSCSEEEECCCC
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChhhhcccccceeeeeeecccccccccccccccccccccccc
Confidence            56889999998 9999999999988885  8999998775432111111  11222      33456899999998764

>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Maltose-6'-phosphate glucosidase GlvA
species: Bacillus subtilis [TaxId: 1423]

Probab=92.14  E-value=0.11  Score=45.96  Aligned_cols=67  Identities=16%  Similarity=0.053  Sum_probs=44.2

Q ss_pred             CcEEEEEcCChhHHH--HHHHHHhC----CCEEEEEeCCchhhhh-h-------hcCCc--e---eeCHHHHhcCCcEEE
Q psy4626          77 GKQVVLCGYGEVGKG--CCQSLKGL----GCVIYITEIDPICALQ-A-------CMDGF--S---VVKLNEVIRTVDIVV  137 (542)
Q Consensus        77 GktVvViG~G~IG~~--vA~~l~~~----Ga~Viv~d~dp~r~~~-A-------~~~G~--~---v~~l~e~l~~aDvVi  137 (542)
                      .-+++|+|.|.+|..  +...++..    +-++..+|+|+.++.. +       ...+.  .   ..+..+++++||+||
T Consensus         3 ~~KI~iIGaGsv~~~~~~~~ll~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~eal~~AD~Vv   82 (167)
T d1u8xx1           3 SFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAATTDPEEAFTDVDFVM   82 (167)
T ss_dssp             CEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEESCHHHHHSSCSEEE
T ss_pred             CceEEEECCChhhhHHHHHHHHhhhhhcCCCEEEEEcCChhHHHHHHHHHHHHHHHhCCCcceEecCChhhccCCCCEEE
Confidence            347999999998743  33333322    2489999999987541 1       11121  1   235678899999999


Q ss_pred             EcCCCc
Q psy4626         138 TATGNK  143 (542)
Q Consensus       138 ~atG~~  143 (542)
                      .+.|..
T Consensus        83 itag~~   88 (167)
T d1u8xx1          83 AHIRVG   88 (167)
T ss_dssp             ECCCTT
T ss_pred             ECCCcC
Confidence            998753

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=92.11  E-value=0.062  Score=51.66  Aligned_cols=33  Identities=15%  Similarity=0.177  Sum_probs=28.7

Q ss_pred             cEEEEEcCChhHHHHHHHHHhCC--CEEEEEeCCc
Q psy4626          78 KQVVLCGYGEVGKGCCQSLKGLG--CVIYITEIDP  110 (542)
Q Consensus        78 ktVvViG~G~IG~~vA~~l~~~G--a~Viv~d~dp  110 (542)
                      |+|+|||+|+.|..+|..|+..|  .+|+++|.++
T Consensus         5 KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~   39 (335)
T d2gv8a1           5 RKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRG   39 (335)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSS
T ss_pred             CeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCC
Confidence            78999999999999999987666  4999999654

>d2naca2 c.23.12.1 (A:1-147,A:336-374) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=92.06  E-value=0.14  Score=46.11  Aligned_cols=85  Identities=19%  Similarity=0.184  Sum_probs=64.9

Q ss_pred             HHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCCCccc
Q psy4626          91 GCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEI  170 (542)
Q Consensus        91 ~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g~~ei  170 (542)
                      ++.+.|+..|.+++++.-.+.          +-..+++.+.++|++|...=.+.-++++.++..++-..++..|.|-+.+
T Consensus        58 glr~~Le~~GhelV~~sd~~~----------~~~el~k~l~DADivI~~pf~~~~lt~e~i~~ap~LKlI~~~g~G~D~V  127 (186)
T d2naca2          58 GLRKYLESNGHTLVVTSDKDG----------PDSVFERELVDADVVISQPFWPAYLTPERIAKAKNLKLALTAGIGSDHV  127 (186)
T ss_dssp             GCHHHHHHTTCEEEEESCCSS----------TTSHHHHHHTTCSEEEEBTTBCCCBCHHHHHHCTTCCEEEESSSCCTTB
T ss_pred             hHHHHHHHCCCEEEEecCCCC----------ChHHHHhhcccCCEEEEecccccccCHHHHhcCccceEEEEeccCCccc
Confidence            456899999999988742111          1123456788999999874223368899999999999999999999999


Q ss_pred             ChHhhcCCCcceeee
Q psy4626         171 DVNSLRTPDLTWEKV  185 (542)
Q Consensus       171 d~~aL~~~~l~v~~~  185 (542)
                      |+++..++++.+.++
T Consensus       128 Dl~aa~e~gI~V~n~  142 (186)
T d2naca2         128 DLQSAIDRNVTVAEV  142 (186)
T ss_dssp             CHHHHHHTTCEEEEC
T ss_pred             cHHHHHhCCCEEEEC
Confidence            999999877766554

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=92.00  E-value=0.043  Score=49.39  Aligned_cols=32  Identities=19%  Similarity=0.175  Sum_probs=29.6

Q ss_pred             EEEEEcCChhHHHHHHHHHhCCCEEEEEeCCc
Q psy4626          79 QVVLCGYGEVGKGCCQSLKGLGCVIYITEIDP  110 (542)
Q Consensus        79 tVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp  110 (542)
                      .++|||.||.|..+|..++.+|.+|.++|.++
T Consensus         7 DlvVIG~GpaGl~aA~~aa~~G~~V~liE~~~   38 (220)
T d1lvla1           7 TLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQA   38 (220)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHTCCEEEECSSC
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Confidence            48999999999999999999999999998653

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.84  E-value=0.063  Score=47.95  Aligned_cols=31  Identities=19%  Similarity=0.247  Sum_probs=29.0

Q ss_pred             EEEEcCChhHHHHHHHHHhCCCEEEEEeCCc
Q psy4626          80 VVLCGYGEVGKGCCQSLKGLGCVIYITEIDP  110 (542)
Q Consensus        80 VvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp  110 (542)
                      |+|||.||.|..+|..+..+|.+|.++|.++
T Consensus         6 viIIG~GpaG~~aA~~aar~G~kV~vIEk~~   36 (221)
T d3grsa1           6 YLVIGGGSGGLASARRAAELGARAAVVESHK   36 (221)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             EEEECCCHHHHHHHHHHHHCCCEEEEEeccC
Confidence            8999999999999999999999999999654

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=91.75  E-value=0.045  Score=49.23  Aligned_cols=33  Identities=18%  Similarity=0.179  Sum_probs=29.6

Q ss_pred             cEEEEEcCChhHHHHHHHHHhCC-------CEEEEEeCCc
Q psy4626          78 KQVVLCGYGEVGKGCCQSLKGLG-------CVIYITEIDP  110 (542)
Q Consensus        78 ktVvViG~G~IG~~vA~~l~~~G-------a~Viv~d~dp  110 (542)
                      .+|+|||+||-|+.+|..|...|       .+|+++|..|
T Consensus         3 ~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~   42 (239)
T d1lqta2           3 YYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLP   42 (239)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSS
T ss_pred             cEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCC
Confidence            48999999999999999998777       6899999876

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=91.74  E-value=0.076  Score=49.64  Aligned_cols=38  Identities=21%  Similarity=0.341  Sum_probs=32.8

Q ss_pred             cccCcEEEEEcCC-hhHHHHHHHHHhCCCEEEEEeCCch
Q psy4626          74 MFGGKQVVLCGYG-EVGKGCCQSLKGLGCVIYITEIDPI  111 (542)
Q Consensus        74 ~l~GktVvViG~G-~IG~~vA~~l~~~Ga~Viv~d~dp~  111 (542)
                      .|.||+|+|.|.+ -||+.+|+.|...|++|+++..+..
T Consensus         3 ~L~GK~alITGas~GIG~aia~~la~~G~~Vvi~~~~~~   41 (259)
T d1ja9a_           3 PLAGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSS   41 (259)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEcCCCh
Confidence            5789999999985 5999999999999999998755443

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=91.67  E-value=0.086  Score=43.16  Aligned_cols=36  Identities=11%  Similarity=0.120  Sum_probs=29.9

Q ss_pred             cCcEEEEEcCChhHHHHHHHHHh---CCCEEEEEeCCch
Q psy4626          76 GGKQVVLCGYGEVGKGCCQSLKG---LGCVIYITEIDPI  111 (542)
Q Consensus        76 ~GktVvViG~G~IG~~vA~~l~~---~Ga~Viv~d~dp~  111 (542)
                      ..++++|+|.|.+|..+|..+..   +|.+|+++++.+.
T Consensus        17 ~p~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~~   55 (117)
T d1feca2          17 APKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDM   55 (117)
T ss_dssp             CCSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSS
T ss_pred             cCCeEEEECCChHHHHHHHHhHhhcccccccceeccccc
Confidence            35899999999999999976554   5889999997663

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.66  E-value=0.06  Score=50.19  Aligned_cols=31  Identities=26%  Similarity=0.338  Sum_probs=29.1

Q ss_pred             EEEEcCChhHHHHHHHHHhCCCEEEEEeCCc
Q psy4626          80 VVLCGYGEVGKGCCQSLKGLGCVIYITEIDP  110 (542)
Q Consensus        80 VvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp  110 (542)
                      |+|||+|..|+.+|..|+..|.+|+|+|.++
T Consensus         2 ViVIGaG~aGL~aA~~L~~~G~~V~VlE~~~   32 (383)
T d2v5za1           2 VVVVGGGISGMAAAKLLHDSGLNVVVLEARD   32 (383)
T ss_dssp             EEEECCBHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             EEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence            8999999999999999999999999999654

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=91.65  E-value=0.055  Score=47.98  Aligned_cols=35  Identities=9%  Similarity=-0.045  Sum_probs=31.4

Q ss_pred             cCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCc
Q psy4626          76 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDP  110 (542)
Q Consensus        76 ~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp  110 (542)
                      ..++|+|||.||.|..+|..|..+|++|+++|..+
T Consensus         4 ~~~~VvIIGgGpaGl~aA~~~ar~g~~v~vie~~~   38 (192)
T d1vdca1           4 HNTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWM   38 (192)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSS
T ss_pred             ccceEEEECCCHHHHHHHHHHHHcCCcEEEEEeec
Confidence            35789999999999999999999999999998554

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.61  E-value=0.068  Score=47.84  Aligned_cols=32  Identities=25%  Similarity=0.203  Sum_probs=29.3

Q ss_pred             EEEEEcCChhHHHHHHHHHhCCCEEEEEeCCc
Q psy4626          79 QVVLCGYGEVGKGCCQSLKGLGCVIYITEIDP  110 (542)
Q Consensus        79 tVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp  110 (542)
                      -|+|||.||.|..+|..|..+|.+|.++|..+
T Consensus         7 DviVIG~GpAGl~aA~~aa~~G~kV~lie~~~   38 (233)
T d1v59a1           7 DVVIIGGGPAGYVAAIKAAQLGFNTACVEKRG   38 (233)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEEecC
Confidence            48999999999999999999999999999543

>d1mv8a3 c.26.3.1 (A:301-436) GDP-mannose 6-dehydrogenase, GDP-binding domain {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
domain: GDP-mannose 6-dehydrogenase, GDP-binding domain
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=91.60  E-value=0.41  Score=40.17  Aligned_cols=87  Identities=18%  Similarity=0.227  Sum_probs=59.9

Q ss_pred             cccCcEEEEEcCC----------hhHHHHHHHHHhCCCEEEEEeCCchhhhhh-hcC-------------CceeeCHHHH
Q psy4626          74 MFGGKQVVLCGYG----------EVGKGCCQSLKGLGCVIYITEIDPICALQA-CMD-------------GFSVVKLNEV  129 (542)
Q Consensus        74 ~l~GktVvViG~G----------~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A-~~~-------------G~~v~~l~e~  129 (542)
                      .+.+++|+|+|.-          .-...++..|...|++|.++|  |.-.... ...             .....+++++
T Consensus        10 ~~~~kkI~ilGlafK~~t~D~R~Sps~~li~~L~~~g~~V~~~D--P~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~   87 (136)
T d1mv8a3          10 SHDTRKVGLLGLSFKAGTDDLRESPLVELAEMLIGKGYELRIFD--RNVEYARVHGANKEYIESKIPHVSSLLVSDLDEV   87 (136)
T ss_dssp             TSSCCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEEC--HHHHHHTTSSSCHHHHHHTSHHHHTTBCSCHHHH
T ss_pred             hcCCCEEEEEEEEECCCCcchhcCHHHHHHHHHhhhhccccccC--CCCCHHHHhhhhhhhhhhccccccceeehhhhhh
Confidence            3568999999973          234789999999999999998  5321110 000             1123467888


Q ss_pred             hcCCcEEEEcCCCcccCCHHHHhccCCCeEEEecc
Q psy4626         130 IRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMG  164 (542)
Q Consensus       130 l~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG  164 (542)
                      +.++|++|.++..+..  .+....++++..++.+-
T Consensus        88 i~~~D~ivi~t~h~~f--~~l~~~~~~~~~I~D~~  120 (136)
T d1mv8a3          88 VASSDVLVLGNGDELF--VDLVNKTPSGKKLVDLV  120 (136)
T ss_dssp             HHHCSEEEECSCCGGG--HHHHHSCCTTCEEEESS
T ss_pred             hhhceEEEEEeCCHHH--HHHHHHhcCCCEEEECC
Confidence            9999999999876543  24555677778887643

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=91.44  E-value=0.15  Score=49.04  Aligned_cols=39  Identities=21%  Similarity=0.157  Sum_probs=34.3

Q ss_pred             cccCcEEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCchh
Q psy4626          74 MFGGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPIC  112 (542)
Q Consensus        74 ~l~GktVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp~r  112 (542)
                      .-.||+|+|.|. |-||+.++..|...|.+|+++.+++.+
T Consensus         8 ~~~gk~VlVTG~sGfIGs~l~~~Ll~~G~~V~~~vR~~~~   47 (342)
T d1y1pa1           8 LPEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASK   47 (342)
T ss_dssp             SCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHH
T ss_pred             CCCcCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCchh
Confidence            456999999998 789999999999999999998877644

>d1uh5a_ c.2.1.2 (A:) Enoyl-ACP reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=91.42  E-value=0.24  Score=47.77  Aligned_cols=35  Identities=20%  Similarity=0.295  Sum_probs=30.7

Q ss_pred             CcEEEEEcCC---hhHHHHHHHHHhCCCEEEEEeCCch
Q psy4626          77 GKQVVLCGYG---EVGKGCCQSLKGLGCVIYITEIDPI  111 (542)
Q Consensus        77 GktVvViG~G---~IG~~vA~~l~~~Ga~Viv~d~dp~  111 (542)
                      +|.++|.|.|   -||+.+|+.|...|++|++++.++.
T Consensus         2 ~kVAlITGaa~s~GIG~aiA~~la~~GA~V~i~~~~~~   39 (329)
T d1uh5a_           2 EDICFIAGIGDTNGYGWGIAKELSKRNVKIIFGIWPPV   39 (329)
T ss_dssp             CCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEECGGG
T ss_pred             CcEEEEeCCCCCChHHHHHHHHHHHcCCEEEEEeCchh
Confidence            6889999976   6999999999999999999876543

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=91.40  E-value=0.075  Score=47.21  Aligned_cols=31  Identities=23%  Similarity=0.224  Sum_probs=28.9

Q ss_pred             EEEEcCChhHHHHHHHHHhCCCEEEEEeCCc
Q psy4626          80 VVLCGYGEVGKGCCQSLKGLGCVIYITEIDP  110 (542)
Q Consensus        80 VvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp  110 (542)
                      |+|||.||.|..+|..++.+|.+|.++|..+
T Consensus         6 viVIG~GpaGl~aA~~aar~G~kV~vIEk~~   36 (223)
T d1ebda1           6 TLVVGAGPGGYVAAIRAAQLGQKVTIVEKGN   36 (223)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             EEEECCCHHHHHHHHHHHHCCCEEEEEecCC
Confidence            8999999999999999999999999998654

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=91.37  E-value=0.068  Score=49.26  Aligned_cols=33  Identities=21%  Similarity=0.359  Sum_probs=30.3

Q ss_pred             EEEEEcCChhHHHHHHHHHhCCCEEEEEeCCch
Q psy4626          79 QVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPI  111 (542)
Q Consensus        79 tVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~  111 (542)
                      .|+|||.|+.|..+|..|+..|.+|+++|.++.
T Consensus         6 DViIIGaG~aGl~aA~~la~~G~~V~vlEk~~~   38 (253)
T d2gqfa1           6 ENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKK   38 (253)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             cEEEECcCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence            489999999999999999999999999997653

>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=91.29  E-value=0.079  Score=51.06  Aligned_cols=38  Identities=18%  Similarity=0.477  Sum_probs=34.3

Q ss_pred             cccCcEEEEEcCC-hhHHHHHHHHHhCCCEEEEEeCCch
Q psy4626          74 MFGGKQVVLCGYG-EVGKGCCQSLKGLGCVIYITEIDPI  111 (542)
Q Consensus        74 ~l~GktVvViG~G-~IG~~vA~~l~~~Ga~Viv~d~dp~  111 (542)
                      .+.||+++|.|.+ -||+.+|+.|...|++|+++|+++.
T Consensus         4 ~l~gKvalITGas~GIG~aiA~~la~~Ga~Vvi~d~~~~   42 (302)
T d1gz6a_           4 RFDGRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGD   42 (302)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBC
T ss_pred             CcCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCch
Confidence            4789999999996 4999999999999999999998764

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=91.21  E-value=0.079  Score=47.96  Aligned_cols=32  Identities=25%  Similarity=0.206  Sum_probs=29.6

Q ss_pred             EEEEEcCChhHHHHHHHHHhCCCEEEEEeCCc
Q psy4626          79 QVVLCGYGEVGKGCCQSLKGLGCVIYITEIDP  110 (542)
Q Consensus        79 tVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp  110 (542)
                      -|+|||.||.|+.+|..|+.+|.+|.++|..+
T Consensus         8 DviIIG~GPaGlsaA~~aa~~G~~V~viE~~~   39 (229)
T d1ojta1           8 DVVVLGGGPGGYSAAFAAADEGLKVAIVERYK   39 (229)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCeEEEEeccC
Confidence            48999999999999999999999999999654

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=91.18  E-value=0.11  Score=45.05  Aligned_cols=36  Identities=17%  Similarity=0.236  Sum_probs=30.8

Q ss_pred             ccCcEEEEEcCChhHHHHHHHHHhCCC-EEEEEeCCc
Q psy4626          75 FGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDP  110 (542)
Q Consensus        75 l~GktVvViG~G~IG~~vA~~l~~~Ga-~Viv~d~dp  110 (542)
                      ..+++|+|||.|.+|..+|..+..+|+ .|+++.+.+
T Consensus        43 ~~~~kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~rr~   79 (153)
T d1gtea3          43 SIRGAVIVLGAGDTAFDCATSALRCGARRVFLVFRKG   79 (153)
T ss_dssp             CCCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSC
T ss_pred             cCCCEEEEECCChhHHHHHHHHHHcCCcceeEEEeCC
Confidence            457889999999999999999999998 687876544

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=91.02  E-value=0.069  Score=48.22  Aligned_cols=33  Identities=9%  Similarity=0.196  Sum_probs=29.9

Q ss_pred             EEEEEcCChhHHHHHHHHHhCCCEEEEEeCCch
Q psy4626          79 QVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPI  111 (542)
Q Consensus        79 tVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~  111 (542)
                      -|+|||.||.|..+|..++.+|.+|.++|..+.
T Consensus         5 DviVIG~GpaGl~aA~~aa~~G~kV~viE~~~~   37 (235)
T d1h6va1           5 DLIIIGGGSGGLAAAKEAAKFDKKVMVLDFVTP   37 (235)
T ss_dssp             EEEEECCSHHHHHHHHHHGGGCCCEEEECCCCC
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCeEEEEeccCC
Confidence            389999999999999999999999999996553

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=90.96  E-value=0.13  Score=47.93  Aligned_cols=39  Identities=10%  Similarity=0.133  Sum_probs=34.6

Q ss_pred             CcEEEEEcCC-hhHHHHHHHHHhCCCEEEEEeCCchhhhh
Q psy4626          77 GKQVVLCGYG-EVGKGCCQSLKGLGCVIYITEIDPICALQ  115 (542)
Q Consensus        77 GktVvViG~G-~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~  115 (542)
                      ||.++|.|.+ -||+.+|+.|...|++|+++++++.++.+
T Consensus         2 gKValITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~   41 (257)
T d2rhca1           2 SEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRT   41 (257)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHH
Confidence            7889999986 59999999999999999999999876543

>d1ml4a2 c.78.1.1 (A:152-308) Aspartate carbamoyltransferase catalytic subunit {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=90.90  E-value=0.6  Score=39.89  Aligned_cols=97  Identities=16%  Similarity=0.205  Sum_probs=62.2

Q ss_pred             ccCcEEEEEcC---ChhHHHHHHHHHhCCCEEEEEeCCchhh-----hhhhcCCce---eeCHHHHhcCCcEEEEcCCC-
Q psy4626          75 FGGKQVVLCGY---GEVGKGCCQSLKGLGCVIYITEIDPICA-----LQACMDGFS---VVKLNEVIRTVDIVVTATGN-  142 (542)
Q Consensus        75 l~GktVvViG~---G~IG~~vA~~l~~~Ga~Viv~d~dp~r~-----~~A~~~G~~---v~~l~e~l~~aDvVi~atG~-  142 (542)
                      +.|.+|+++|=   +++....+..+..+|++++++-+.....     ..+...+..   ..+++++++++|+|.+..-. 
T Consensus         2 l~gl~i~~vGD~~~srV~~Sli~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~d~~~av~~aDvvy~~~~~~   81 (157)
T d1ml4a2           2 IDGLKIGLLGDLKYGRTVHSLAEALTFYDVELYLISPELLRMPRHIVEELREKGMKVVETTTLEDVIGKLDVLYVTRIQK   81 (157)
T ss_dssp             SSSEEEEEESCTTTCHHHHHHHHHGGGSCEEEEEECCGGGCCCHHHHHHHHHTTCCEEEESCTHHHHTTCSEEEECCCCG
T ss_pred             cCCCEEEEEcCCccChHHHHHHHHHHhcCCcEEEEccchhhcchHHHHHHHhhcccceeecCHHHhhccCcEEEeecccc
Confidence            56999999999   5788999999999999999986433221     122223322   34678999999999885411 


Q ss_pred             --------------cccCCHHHHhccCCCeEEEeccCCCcccC
Q psy4626         143 --------------KNVVTREHMDKMKNGCVVCNMGHSNTEID  171 (542)
Q Consensus       143 --------------~~lI~~e~l~~mk~GailvnvG~g~~eid  171 (542)
                                    .-.++.+.++.+++.+++.-.+.-+.||+
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~mHplPRg~EI~  124 (157)
T d1ml4a2          82 ERFPDEQEYLKVKGSYQVNLKVLEKAKDELRIMHPLPRVDEIH  124 (157)
T ss_dssp             GGSSSHHHHHTTTTCCCBCTTGGGGSCTTCEEECCSCCSSSBC
T ss_pred             ccccchhhHHhhcchhccCHHHHhhcCCCeEEecCCCcCceec
Confidence                          11233445555666666555444333443

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=90.75  E-value=0.067  Score=49.60  Aligned_cols=38  Identities=21%  Similarity=0.448  Sum_probs=34.1

Q ss_pred             cccCcEEEEEcCChhHHHHHHHHHhCCC-EEEEEeCCch
Q psy4626          74 MFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPI  111 (542)
Q Consensus        74 ~l~GktVvViG~G~IG~~vA~~l~~~Ga-~Viv~d~dp~  111 (542)
                      .+..++|+|+|+|.+|..+|..|...|. +++++|.|..
T Consensus        27 kL~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~V   65 (247)
T d1jw9b_          27 ALKDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTV   65 (247)
T ss_dssp             HHHHCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBC
T ss_pred             HHhCCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCccc
Confidence            3678899999999999999999999999 9999987654

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=90.63  E-value=0.085  Score=49.66  Aligned_cols=33  Identities=27%  Similarity=0.475  Sum_probs=30.3

Q ss_pred             EEEEEcCChhHHHHHHHHHhCCCEEEEEeCCch
Q psy4626          79 QVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPI  111 (542)
Q Consensus        79 tVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~  111 (542)
                      -|+|||.|..|..+|..|+..|++|+++|..+.
T Consensus        18 DVlVIG~G~aGl~aA~~la~~G~~V~lvEK~~~   50 (308)
T d1y0pa2          18 DVVVVGSGGAGFSAAISATDSGAKVILIEKEPV   50 (308)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence            399999999999999999999999999997653

>d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Escherichia coli [TaxId: 562]

Probab=90.54  E-value=0.057  Score=48.00  Aligned_cols=39  Identities=21%  Similarity=0.531  Sum_probs=34.8

Q ss_pred             ehhhhcccCcEEEEccCCCCccCHhHHhcCCCCcEEEccCCC
Q psy4626         303 KLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHS  344 (542)
Q Consensus       303 ~~~~a~~~~d~~~t~tg~~~vi~~~~~~~mk~gail~n~gh~  344 (542)
                      .+.+.+++|||+|+++|.++.|+.+++   |+|++++++|-.
T Consensus        73 ~l~~~~~~ADivI~a~G~p~~i~~~~v---k~g~vvIDvGi~  111 (166)
T d1b0aa1          73 NLRHHVENADLLIVAVGKPGFIPGDWI---KEGAIVIDVGIN  111 (166)
T ss_dssp             CHHHHHHHCSEEEECSCCTTCBCTTTS---CTTCEEEECCCE
T ss_pred             hhHHHHhhhhHhhhhccCccccccccc---CCCcEEEecCce
Confidence            467888999999999999999998865   899999999954

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=90.37  E-value=0.086  Score=49.81  Aligned_cols=33  Identities=18%  Similarity=0.248  Sum_probs=29.0

Q ss_pred             EEEEEcCChhHHHHHHHHH-----hCCCEEEEEeCCch
Q psy4626          79 QVVLCGYGEVGKGCCQSLK-----GLGCVIYITEIDPI  111 (542)
Q Consensus        79 tVvViG~G~IG~~vA~~l~-----~~Ga~Viv~d~dp~  111 (542)
                      -|+|+|.|+.|+.+|..|.     ..|.+|+++|.+|.
T Consensus         9 DV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~~   46 (360)
T d1pn0a1           9 DVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRST   46 (360)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCCC
Confidence            5999999999999999995     57999999997663

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.36  E-value=0.12  Score=43.56  Aligned_cols=36  Identities=19%  Similarity=0.192  Sum_probs=30.4

Q ss_pred             cCcEEEEEcCChhHHHHHHHH----HhCCCEEEEEeCCch
Q psy4626          76 GGKQVVLCGYGEVGKGCCQSL----KGLGCVIYITEIDPI  111 (542)
Q Consensus        76 ~GktVvViG~G~IG~~vA~~l----~~~Ga~Viv~d~dp~  111 (542)
                      .+++++|+|.|.+|..+|..+    +..|.+|++++.++.
T Consensus        36 ~~k~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~   75 (137)
T d1m6ia2          36 EVKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKG   75 (137)
T ss_dssp             HCSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred             cCCEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEeccccc
Confidence            478999999999998888777    568999999987654

>d1o0sa1 c.2.1.7 (A:296-603) Mitochondrial NAD(P)-dependent malic enzyme {Pig roundworm (Ascaris suum) [TaxId: 6253]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Pig roundworm (Ascaris suum) [TaxId: 6253]

Probab=90.25  E-value=0.37  Score=46.58  Aligned_cols=101  Identities=18%  Similarity=0.267  Sum_probs=67.9

Q ss_pred             hhcCccccCcEEEEEcCChhHHHHHHHHHhC----CC-------EEEEEeCCch-----------hhhhhhcCCceeeCH
Q psy4626          69 RSTDVMFGGKQVVLCGYGEVGKGCCQSLKGL----GC-------VIYITEIDPI-----------CALQACMDGFSVVKL  126 (542)
Q Consensus        69 r~~~~~l~GktVvViG~G~IG~~vA~~l~~~----Ga-------~Viv~d~dp~-----------r~~~A~~~G~~v~~l  126 (542)
                      +.++..+...+++|+|+|.-|.++|..+...    |.       +++++|+.-.           +...+... ....++
T Consensus        17 ki~gk~l~d~kivi~GAGaAg~gia~~l~~~~~~~G~~~~~a~~~i~~vD~~Glv~~~r~d~~~~k~~~a~~~-~~~~~l   95 (308)
T d1o0sa1          17 RVTKKLVSQEKYLFFGAGAASTGIAEMIVHQMQNEGISKEEACNRIYLMDIDGLVTKNRKEMNPRHVQFAKDM-PETTSI   95 (308)
T ss_dssp             HHHCCCGGGCCEEEECCSHHHHHHHHHHHHHHHTTTCCHHHHHHTEEEEETTEECBTTCSSCCGGGTTTCBSS-CCCCCH
T ss_pred             HHhCCCHHHcEEEEECcCHHHHHHHHHHHHHHHhcCCchhhhhceEEEEeCCCCccCCCcccCHHHHHHHHhc-ccCCcH
Confidence            3456678889999999999999988877644    32       4888886432           11111111 112345


Q ss_pred             HHHhc--CCcEEEEcCCCcccCCHHHHhccC---CCeEEEeccCCCccc
Q psy4626         127 NEVIR--TVDIVVTATGNKNVVTREHMDKMK---NGCVVCNMGHSNTEI  170 (542)
Q Consensus       127 ~e~l~--~aDvVi~atG~~~lI~~e~l~~mk---~GailvnvG~g~~ei  170 (542)
                      .++++  ..+++|-+++..++++++.++.|.   +.-+|.-.+....++
T Consensus        96 ~~~i~~~kptvliG~s~~~g~ft~evv~~Ma~~~~~PIIFaLSNPtp~~  144 (308)
T d1o0sa1          96 LEVIRAARPGALIGASTVRGAFNEEVIRAMAEINERPIIFALSNPTSKA  144 (308)
T ss_dssp             HHHHHHHCCSEEEECSSCTTCSCHHHHHHHHHHCSSCEEEECCSSGGGC
T ss_pred             HHHHhccccccEEecccccCCCCHHHHHHHHhhCCCcEEEEccCCCCCC
Confidence            55553  578999999988999988887774   777777777654433

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=90.22  E-value=0.1  Score=50.00  Aligned_cols=34  Identities=24%  Similarity=0.265  Sum_probs=30.7

Q ss_pred             CcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCc
Q psy4626          77 GKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDP  110 (542)
Q Consensus        77 GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp  110 (542)
                      .-.|+|||+|+.|+.+|..|+..|.+|+++|..+
T Consensus         7 ~~dV~IIGAG~sGl~~a~~L~~~G~~v~i~Ek~~   40 (298)
T d1w4xa1           7 EVDVLVVGAGFSGLYALYRLRELGRSVHVIETAG   40 (298)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CCCEEEECccHHHHHHHHHHHhCCCCEEEEEcCC
Confidence            4579999999999999999999999999998644

>d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Halohydrin dehalogenase HheC
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=90.12  E-value=0.1  Score=48.60  Aligned_cols=37  Identities=11%  Similarity=0.064  Sum_probs=32.3

Q ss_pred             EEEEEcCCh-hHHHHHHHHHhCCCEEEEEeCCchhhhh
Q psy4626          79 QVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQ  115 (542)
Q Consensus        79 tVvViG~G~-IG~~vA~~l~~~Ga~Viv~d~dp~r~~~  115 (542)
                      |++|.|.+. ||+++|..|...|++|++++++..+..+
T Consensus         2 TAlVTGas~GiG~aiA~~la~~Ga~V~i~~r~~~~~~~   39 (252)
T d1zmta1           2 TAIVTNVKHFGGMGSALRLSEAGHTVACHDESFKQKDE   39 (252)
T ss_dssp             EEEESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSHHH
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHH
Confidence            789999975 9999999999999999999987765543

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=90.06  E-value=0.16  Score=47.27  Aligned_cols=38  Identities=24%  Similarity=0.326  Sum_probs=32.2

Q ss_pred             cEEEEEcCC-hhHHHHHHHHHhCCCEEEEEeCCchhhhh
Q psy4626          78 KQVVLCGYG-EVGKGCCQSLKGLGCVIYITEIDPICALQ  115 (542)
Q Consensus        78 ktVvViG~G-~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~  115 (542)
                      |.++|.|.+ -||+.+|+.|...|++|+++++++.++.+
T Consensus         2 KValITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~   40 (255)
T d1gega_           2 KVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKA   40 (255)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHH
T ss_pred             CEEEEcCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHH
Confidence            456888886 59999999999999999999999876543

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=90.03  E-value=0.13  Score=46.35  Aligned_cols=40  Identities=28%  Similarity=0.458  Sum_probs=33.5

Q ss_pred             ehhhhcccCcEEEE---ccC--CCCccCHhHHhcCCCCcEEEccC
Q psy4626         303 KLNEVIRTVDIVVT---ATG--NKNVVTREHMDKMKNGCVVCNMG  342 (542)
Q Consensus       303 ~~~~a~~~~d~~~t---~tg--~~~vi~~~~~~~mk~gail~n~g  342 (542)
                      .+.+.++.+|+|||   ..|  .+.+|+++.++.||+|++++...
T Consensus       107 ~l~~~l~~aDlVI~talipG~~aP~lit~~mv~~Mk~GSVIVDva  151 (183)
T d1l7da1         107 AVLKELVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVIIDLA  151 (183)
T ss_dssp             HHHHHHTTCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEEETT
T ss_pred             HHHHHHHhhhhheeeeecCCcccceeehHHHHHhcCCCcEEEEEe
Confidence            36788999999999   334  45699999999999999998654

>d1ygya2 c.23.12.1 (A:3-98,A:283-316) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=89.99  E-value=0.5  Score=39.54  Aligned_cols=54  Identities=13%  Similarity=0.185  Sum_probs=44.3

Q ss_pred             HhcCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCCCcccChHhhcCCCcceee
Q psy4626         129 VIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEK  184 (542)
Q Consensus       129 ~l~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g~~eid~~aL~~~~l~v~~  184 (542)
                      .++++|+++...++  .++++.++.+++-..+.+.|.|-+.+|++++.++++.+..
T Consensus        39 ~~~~~d~ii~~~~~--~i~~~~l~~~p~Lk~I~~~g~G~d~IDl~~~~~~gI~V~n   92 (130)
T d1ygya2          39 AVPEADALLVRSAT--TVDAEVLAAAPKLKIVARAGVGLDNVDVDAATARGVLVVN   92 (130)
T ss_dssp             HGGGCSEEEECSSS--CBCHHHHHTCTTCCEEEESSSCCTTBCHHHHHHTTCEEEC
T ss_pred             HcCCCEEEEEcCcc--cchHHHHhhcccceEEeeecccccchhHHHHHHCCceEEe
Confidence            46899988875444  5788999999999999999999899999999877665543

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=89.92  E-value=0.098  Score=49.80  Aligned_cols=33  Identities=24%  Similarity=0.403  Sum_probs=30.3

Q ss_pred             EEEEEcCChhHHHHHHHHHhCCCEEEEEeCCch
Q psy4626          79 QVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPI  111 (542)
Q Consensus        79 tVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~  111 (542)
                      .++|||+|.-|..+|..|...|.+|.++|.++.
T Consensus         3 dv~IIGaG~sGl~~A~~L~~~g~~V~iiEk~~~   35 (298)
T d1i8ta1           3 DYIIVGSGLFGAVCANELKKLNKKVLVIEKRNH   35 (298)
T ss_dssp             EEEEECCSHHHHHHHHHHGGGTCCEEEECSSSS
T ss_pred             cEEEECCcHHHHHHHHHHHhCCCcEEEEECCCC
Confidence            589999999999999999999999999997653

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=89.78  E-value=0.13  Score=43.67  Aligned_cols=31  Identities=23%  Similarity=0.394  Sum_probs=27.5

Q ss_pred             EEEEEcCChhHHHHHHHHHhCCCEEEEEeCCc
Q psy4626          79 QVVLCGYGEVGKGCCQSLKGLGCVIYITEIDP  110 (542)
Q Consensus        79 tVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp  110 (542)
                      +|+|+|.|++|..+|..|+. +.+|++++..+
T Consensus         2 rVvIIGgG~~G~e~A~~l~~-~~~Vtvv~~~~   32 (167)
T d1xhca1           2 KVVIVGNGPGGFELAKQLSQ-TYEVTVIDKEP   32 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHTT-TSEEEEECSSS
T ss_pred             eEEEECCcHHHHHHHHHHHc-CCCEEEEeccc
Confidence            79999999999999999975 77999998655

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=89.73  E-value=0.11  Score=48.42  Aligned_cols=34  Identities=21%  Similarity=0.272  Sum_probs=29.9

Q ss_pred             CcEEEEEcCChhHHHHHHHHHh-CCCEEEEEeCCc
Q psy4626          77 GKQVVLCGYGEVGKGCCQSLKG-LGCVIYITEIDP  110 (542)
Q Consensus        77 GktVvViG~G~IG~~vA~~l~~-~Ga~Viv~d~dp  110 (542)
                      ..-|+|||+|+.|+.+|..|.. .|.+|.++|..|
T Consensus        33 e~DViVIGaGpaGL~aA~~LA~~~G~~V~vlE~~~   67 (278)
T d1rp0a1          33 ETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSV   67 (278)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHccCCeEEEEecCC
Confidence            4569999999999999999865 699999999765

>d1qp8a2 c.23.12.1 (A:1-82,A:264-302) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=89.65  E-value=0.0028  Score=53.86  Aligned_cols=62  Identities=10%  Similarity=0.055  Sum_probs=37.4

Q ss_pred             ceecccHHhhhcccccceeecCchhhhHHHHhHHHHHHHHHHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCC
Q psy4626          24 GCTHINAQTAAGKLTVPAMNVNDSVTKTKFDNLYMCRESIIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLG  100 (542)
Q Consensus        24 ~~lh~~~~tA~~~L~~PV~~vn~s~~K~~fd~~~g~~~s~~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~G  100 (542)
                      |..|++.+... . ..+|++..+.......+...+.-   + +..         ++++|+|+|.||+.+|+++++||
T Consensus        60 G~D~i~~~~~~-~-~i~v~n~~g~~~~~vae~~~~~i---l-~~~---------r~l~i~G~G~iG~~iA~r~~a~G  121 (121)
T d1qp8a2          60 GLDHLPWESIP-P-HVTVAGNAGSNGYGNERVWRQMV---M-EAV---------RNLITYATGGRPRNIAKREDYIG  121 (121)
T ss_dssp             CCTTSCCTTSC-T-TSCEECCCSSSSSSCHHHHHHHH---H-HHH---------HHHHHHHTTSCCSCBCCGGGTC-
T ss_pred             CcCCCCHHHhc-c-CeEEEECCCCChHHHHHHHHHHH---H-Hhc---------CCEEEEcCCHHHHHHHHHHHhcC
Confidence            44566665543 2 56777776654443333222111   1 111         35789999999999999999987

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=89.65  E-value=0.14  Score=47.86  Aligned_cols=39  Identities=10%  Similarity=0.008  Sum_probs=33.1

Q ss_pred             cccCcEEEEEcCC-hhHHHHHHHHHhCCCEEEEEeCCchh
Q psy4626          74 MFGGKQVVLCGYG-EVGKGCCQSLKGLGCVIYITEIDPIC  112 (542)
Q Consensus        74 ~l~GktVvViG~G-~IG~~vA~~l~~~Ga~Viv~d~dp~r  112 (542)
                      .+.||+|+|.|.+ -||+.+|+.+...|++|+++.+++.+
T Consensus         2 ~l~gK~vlITGgs~GIG~~~A~~la~~G~~vii~~r~~~~   41 (254)
T d1sbya1           2 DLTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVEN   41 (254)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCC
T ss_pred             CCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEECCccc
Confidence            3689999999997 59999999999999998887655543

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=89.65  E-value=0.12  Score=47.78  Aligned_cols=31  Identities=19%  Similarity=0.308  Sum_probs=28.9

Q ss_pred             EEEEcCChhHHHHHHHHHhCCCEEEEEeCCc
Q psy4626          80 VVLCGYGEVGKGCCQSLKGLGCVIYITEIDP  110 (542)
Q Consensus        80 VvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp  110 (542)
                      |+|||.|.+|..+|..|...|.+|+++|..+
T Consensus         6 vvIIGaGi~Gls~A~~La~~G~~V~viE~~~   36 (281)
T d2gf3a1           6 VIVVGAGSMGMAAGYQLAKQGVKTLLVDAFD   36 (281)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred             EEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            8999999999999999999999999999643

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=89.47  E-value=0.12  Score=48.29  Aligned_cols=32  Identities=28%  Similarity=0.453  Sum_probs=29.2

Q ss_pred             EEEEEcCChhHHHHHHHHHhCCC-EEEEEeCCc
Q psy4626          79 QVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDP  110 (542)
Q Consensus        79 tVvViG~G~IG~~vA~~l~~~Ga-~Viv~d~dp  110 (542)
                      .|+|||.|.+|..+|..|...|. +|+++|.++
T Consensus         3 dViIIGaGi~G~s~A~~La~~G~~~V~liE~~~   35 (305)
T d1pj5a2           3 RIVIIGAGIVGTNLADELVTRGWNNITVLDQGP   35 (305)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCCEEEECSSC
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCcEEEEeCCC
Confidence            59999999999999999999996 699999765

>d1pg5a2 c.78.1.1 (A:147-299) Aspartate carbamoyltransferase catalytic subunit {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=89.46  E-value=0.7  Score=39.56  Aligned_cols=99  Identities=17%  Similarity=0.109  Sum_probs=63.6

Q ss_pred             ccCcEEEEEcCC---hhHHHHHHHHHhCCCEEEEEeCCchhh---hhhhcCCce---eeCHHHHhcCCcEEEEcC-C---
Q psy4626          75 FGGKQVVLCGYG---EVGKGCCQSLKGLGCVIYITEIDPICA---LQACMDGFS---VVKLNEVIRTVDIVVTAT-G---  141 (542)
Q Consensus        75 l~GktVvViG~G---~IG~~vA~~l~~~Ga~Viv~d~dp~r~---~~A~~~G~~---v~~l~e~l~~aDvVi~at-G---  141 (542)
                      +.|.+|+++|=+   ++....+..+..+|++++++-..+...   ......|..   +.+++++++++|+|..+. .   
T Consensus         1 l~gl~i~~vGD~~~sRv~~Sl~~~l~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~d~~eai~~aDvvy~~~~q~~~   80 (153)
T d1pg5a2           1 IDGLVFALLGDLKYARTVNSLLRILTRFRPKLVYLISPQLLRARKEILDELNYPVKEVENPFEVINEVDVLYVTRIQKER   80 (153)
T ss_dssp             STTCEEEEEECCSSCHHHHHHHHHGGGSCCSEEEEECCGGGCCCHHHHTTCCSCEEEESCGGGTGGGCSEEEEECCCSTT
T ss_pred             CCCCEEEEECCCCccHHHHHHHHHHHHcCCeeEEEecccccccchhhcccCCCeEEEEeCHHHHhhcCCeEEEeeeeehh
Confidence            468999999985   478899999999999765543222111   111223332   346788999999998631 0   


Q ss_pred             -----------CcccCCHHHHhccCCCeEEEeccCCCcccChH
Q psy4626         142 -----------NKNVVTREHMDKMKNGCVVCNMGHSNTEIDVN  173 (542)
Q Consensus       142 -----------~~~lI~~e~l~~mk~GailvnvG~g~~eid~~  173 (542)
                                 ..--++.+.++.+++.+++.-.+--..||+-+
T Consensus        81 ~~~~~~~~~~~~~y~v~~~~l~~~~~~~i~mH~LPR~~EI~~~  123 (153)
T d1pg5a2          81 FVDEMEYEKIKGSYIVSLDLANKMKKDSIILHPLPRVNEIDRK  123 (153)
T ss_dssp             SSCHHHHHHHGGGGSBCHHHHHTSCTTCEEECCSCCSSSBCGG
T ss_pred             ccchhHHHHHHHhhhhhHHHHhccCCCeEEecCCCCcCCcchh
Confidence                       12235677788888888887666433444433

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=89.22  E-value=0.13  Score=42.08  Aligned_cols=36  Identities=8%  Similarity=0.070  Sum_probs=29.6

Q ss_pred             cCcEEEEEcCChhHHHHHHHHHhCC---CEEEEEeCCch
Q psy4626          76 GGKQVVLCGYGEVGKGCCQSLKGLG---CVIYITEIDPI  111 (542)
Q Consensus        76 ~GktVvViG~G~IG~~vA~~l~~~G---a~Viv~d~dp~  111 (542)
                      ..++++|+|.|++|..+|..+..+|   .+|+++++.+.
T Consensus        19 ~p~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~~   57 (117)
T d1aoga2          19 PPRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEM   57 (117)
T ss_dssp             CCSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSS
T ss_pred             cCCeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccch
Confidence            4689999999999999997776655   57999987553

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=89.18  E-value=0.12  Score=45.63  Aligned_cols=31  Identities=23%  Similarity=0.176  Sum_probs=28.8

Q ss_pred             EEEEcCChhHHHHHHHHHhCCCEEEEEeCCc
Q psy4626          80 VVLCGYGEVGKGCCQSLKGLGCVIYITEIDP  110 (542)
Q Consensus        80 VvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp  110 (542)
                      |+|||.||-|..+|..|+.+|.+|.++|..+
T Consensus         6 viIIGgGpAGl~aA~~aar~G~~V~viE~~~   36 (229)
T d3lada1           6 VIVIGAGPGGYVAAIKSAQLGLKTALIEKYK   36 (229)
T ss_dssp             EEEECCSHHHHHHHHHHHHHTCCEEEEECCB
T ss_pred             EEEECcCHHHHHHHHHHHHCCCeEEEEeccc
Confidence            8999999999999999999999999998654

>d1lc0a1 c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Biliverdin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=89.17  E-value=0.081  Score=46.25  Aligned_cols=63  Identities=16%  Similarity=0.286  Sum_probs=42.0

Q ss_pred             EEEEEcCChhHHHHHHHHHhCC--CEEEEEeCCchhhhhhhcCCceeeCHHHHh--cCCcEEEEcCCC
Q psy4626          79 QVVLCGYGEVGKGCCQSLKGLG--CVIYITEIDPICALQACMDGFSVVKLNEVI--RTVDIVVTATGN  142 (542)
Q Consensus        79 tVvViG~G~IG~~vA~~l~~~G--a~Viv~d~dp~r~~~A~~~G~~v~~l~e~l--~~aDvVi~atG~  142 (542)
                      +|+|+|+|.+|+.-+..++...  ..+.+++.+..+. .+...+....+.++++  .+.|+|+.||.+
T Consensus         9 kv~iIG~G~~g~~h~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~e~l~~~~iD~V~I~tp~   75 (172)
T d1lc0a1           9 GVVVVGVGRAGSVRLRDLKDPRSAAFLNLIGFVSRRE-LGSLDEVRQISLEDALRSQEIDVAYICSES   75 (172)
T ss_dssp             EEEEECCSHHHHHHHHHHTSHHHHTTEEEEEEECSSC-CCEETTEEBCCHHHHHHCSSEEEEEECSCG
T ss_pred             EEEEEcCCHHHHHHHHHHHhCCCCcEEEEEeccchHH-HHHhhccCcCCHHHHHhCCCcchhhhcccc
Confidence            8999999999998887776543  2344444333222 2334455667888887  467999998754

>d1dssg1 c.2.1.3 (G:1-148,G:313-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {South China Sea lobster (Palinurus versicolor) [TaxId: 150436]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: South China Sea lobster (Palinurus versicolor) [TaxId: 150436]

Probab=89.06  E-value=0.19  Score=44.65  Aligned_cols=29  Identities=14%  Similarity=0.421  Sum_probs=25.3

Q ss_pred             EEEEEcCChhHHHHHHHHHhCCCEEEEEe
Q psy4626          79 QVVLCGYGEVGKGCCQSLKGLGCVIYITE  107 (542)
Q Consensus        79 tVvViG~G~IG~~vA~~l~~~Ga~Viv~d  107 (542)
                      +|+|=|+|+||+.+.+.+...+.+|++..
T Consensus         2 kIgINGfGRIGR~~~R~~~~~~~~ivaIN   30 (169)
T d1dssg1           2 KIGINGFGRIGRLVLRAALEMGAQVVAVN   30 (169)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHTCCEEEEE
T ss_pred             eEEEECCcHHHHHHHHHHHhCCCcEEEEC
Confidence            68999999999999999988888776653

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=89.04  E-value=0.15  Score=47.15  Aligned_cols=31  Identities=13%  Similarity=0.208  Sum_probs=28.9

Q ss_pred             EEEEcCChhHHHHHHHHHhCCCEEEEEeCCc
Q psy4626          80 VVLCGYGEVGKGCCQSLKGLGCVIYITEIDP  110 (542)
Q Consensus        80 VvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp  110 (542)
                      |+|||+|+.|..+|..|+.+|.+|.++|.++
T Consensus         4 viVIG~G~aG~~aA~~aa~~G~~V~liE~~~   34 (259)
T d1onfa1           4 LIVIGGGSGGMAAARRAARHNAKVALVEKSR   34 (259)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             EEEECCCHHHHHHHHHHHHCCCeEEEEecCC
Confidence            7999999999999999999999999999653

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.92  E-value=0.22  Score=45.16  Aligned_cols=40  Identities=15%  Similarity=0.089  Sum_probs=31.4

Q ss_pred             ccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhh
Q psy4626          75 FGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQA  116 (542)
Q Consensus        75 l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A  116 (542)
                      ..|.+|+.+|||. |+.+ ..|...|.+|+.+|.+|.-..+|
T Consensus        44 ~~~~rvLd~GCG~-G~~a-~~LA~~G~~V~gvD~S~~ai~~a   83 (229)
T d2bzga1          44 KSGLRVFFPLCGK-AVEM-KWFADRGHSVVGVEISELGIQEF   83 (229)
T ss_dssp             CCSCEEEETTCTT-CTHH-HHHHHTTCEEEEECSCHHHHHHH
T ss_pred             CCCCEEEEeCCCC-cHHH-HHHHhCCCcEEEEeCCHHHHHHH
Confidence            4788999999998 6554 45567899999999999655443

>d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=88.86  E-value=0.18  Score=45.60  Aligned_cols=36  Identities=14%  Similarity=0.303  Sum_probs=32.0

Q ss_pred             CcEEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCchh
Q psy4626          77 GKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPIC  112 (542)
Q Consensus        77 GktVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp~r  112 (542)
                      .|+++|.|. +-||+.+|+.|...|++|+++++++..
T Consensus         1 DK~alITGas~GIG~aiA~~la~~Ga~V~i~~~~~~~   37 (241)
T d1uaya_           1 ERSALVTGGASGLGRAAALALKARGYRVVVLDLRREG   37 (241)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCCS
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCccc
Confidence            478999998 579999999999999999999987754

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=88.81  E-value=0.43  Score=43.43  Aligned_cols=89  Identities=13%  Similarity=0.084  Sum_probs=55.3

Q ss_pred             cccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhh----cCCc----ee--eCHHHHh--cCCcEEEEcCC
Q psy4626          74 MFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQAC----MDGF----SV--VKLNEVI--RTVDIVVTATG  141 (542)
Q Consensus        74 ~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~----~~G~----~v--~~l~e~l--~~aDvVi~atG  141 (542)
                      ..+|++|+=+|+|+=+. +...++..|++|+.+|.+|.....|.    ..|.    ++  .+..+..  ...|+|+....
T Consensus        31 l~pg~~VLDiGCG~G~~-~~~la~~~~~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~~~~~~fD~v~~~~~  109 (245)
T d1nkva_          31 MKPGTRILDLGSGSGEM-LCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVANEKCDVAACVGA  109 (245)
T ss_dssp             CCTTCEEEEETCTTCHH-HHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCCSSCEEEEEEESC
T ss_pred             CCCCCEEEEEcCCCCHH-HHHHHHhcCCEEEEEecccchhhHHHHHHHHhhccccchhhhhHHhhccccCceeEEEEEeh
Confidence            45799999999998543 33445678999999999986543332    2332    22  2233322  46788876432


Q ss_pred             CcccCC-----HHHHhccCCCeEEEec
Q psy4626         142 NKNVVT-----REHMDKMKNGCVVCNM  163 (542)
Q Consensus       142 ~~~lI~-----~e~l~~mk~Gailvnv  163 (542)
                      ..++-+     ++..+.|||||.++..
T Consensus       110 ~~~~~d~~~~l~~~~r~LkPGG~l~i~  136 (245)
T d1nkva_         110 TWIAGGFAGAEELLAQSLKPGGIMLIG  136 (245)
T ss_dssp             GGGTSSSHHHHHHHTTSEEEEEEEEEE
T ss_pred             hhccCCHHHHHHHHHHHcCcCcEEEEE
Confidence            222222     4567778999988753

>d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=88.74  E-value=0.26  Score=41.47  Aligned_cols=47  Identities=17%  Similarity=0.400  Sum_probs=35.9

Q ss_pred             EEEEEcC-ChhHHHHHHHHHhCCCEEEE-EeCCchhhhhhhcCCceeeCHHHHhcCCcEEEEcCC
Q psy4626          79 QVVLCGY-GEVGKGCCQSLKGLGCVIYI-TEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATG  141 (542)
Q Consensus        79 tVvViG~-G~IG~~vA~~l~~~Ga~Viv-~d~dp~r~~~A~~~G~~v~~l~e~l~~aDvVi~atG  141 (542)
                      +|+|+|+ |++|+.+++.+...|.+++. +|.+.                .+.+..+|++||-|-
T Consensus         2 ki~i~G~~GrMG~~i~~~~~~~~~~l~~~id~~~----------------~~~~~~~DVvIDFS~   50 (128)
T d1vm6a3           2 KYGIVGYSGRMGQEIQKVFSEKGHELVLKVDVNG----------------VEELDSPDVVIDFSS   50 (128)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEEETTE----------------EEECSCCSEEEECSC
T ss_pred             EEEEECCCCHHHHHHHHHHhcCCCeEEEEECCCc----------------HHHhccCCEEEEecC
Confidence            6999997 99999999999999987665 34221                123467999999763

>d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=88.72  E-value=0.36  Score=44.58  Aligned_cols=32  Identities=28%  Similarity=0.448  Sum_probs=26.7

Q ss_pred             EEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCc
Q psy4626          79 QVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDP  110 (542)
Q Consensus        79 tVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp  110 (542)
                      .|+|.|. +-||+.+|+.|...|++|++.+.+.
T Consensus         3 V~lITGas~GIG~a~a~~la~~Ga~V~i~~~~~   35 (244)
T d1edoa_           3 VVVVTGASRGIGKAIALSLGKAGCKVLVNYARS   35 (244)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             EEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCC
Confidence            5778887 4699999999999999999876543

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=88.72  E-value=0.43  Score=43.75  Aligned_cols=33  Identities=24%  Similarity=0.344  Sum_probs=29.7

Q ss_pred             cEEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCc
Q psy4626          78 KQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDP  110 (542)
Q Consensus        78 ktVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp  110 (542)
                      ++|+|+|. |.||+.++..|...|.+|++..+++
T Consensus         4 ~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~   37 (312)
T d1qyda_           4 SRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPE   37 (312)
T ss_dssp             CCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCC
Confidence            46999996 9999999999999999999998765

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=88.67  E-value=0.14  Score=48.65  Aligned_cols=32  Identities=31%  Similarity=0.535  Sum_probs=30.1

Q ss_pred             EEEEcCChhHHHHHHHHHhCCCEEEEEeCCch
Q psy4626          80 VVLCGYGEVGKGCCQSLKGLGCVIYITEIDPI  111 (542)
Q Consensus        80 VvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~  111 (542)
                      |+|||.|+.|..+|..|...|++|+++|..+.
T Consensus        26 VvVIG~G~aGl~aA~~la~~G~~V~llEk~~~   57 (322)
T d1d4ca2          26 VVIIGSGGAGLAAAVSARDAGAKVILLEKEPI   57 (322)
T ss_dssp             EEEECSSHHHHHHHHHHHTTTCCEEEECSSSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            99999999999999999999999999997664

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=88.60  E-value=0.37  Score=41.46  Aligned_cols=66  Identities=14%  Similarity=0.284  Sum_probs=42.8

Q ss_pred             cEEEEEcC-ChhHHHHHHHHHhCCC-------EEEEEeCCchhhh-hhh----cC-Cc---e----eeCHHHHhcCCcEE
Q psy4626          78 KQVVLCGY-GEVGKGCCQSLKGLGC-------VIYITEIDPICAL-QAC----MD-GF---S----VVKLNEVIRTVDIV  136 (542)
Q Consensus        78 ktVvViG~-G~IG~~vA~~l~~~Ga-------~Viv~d~dp~r~~-~A~----~~-G~---~----v~~l~e~l~~aDvV  136 (542)
                      .+|.|+|+ |.||..+|..|...+.       ....+|.++.+.. ++.    .+ .+   .    ..+..+.++++|+|
T Consensus         4 ~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvV   83 (154)
T d5mdha1           4 IRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLKDVIATDKEEIAFKDLDVA   83 (154)
T ss_dssp             EEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCTTEEEEEEESCHHHHTTTCSEE
T ss_pred             eEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCccchhhhhhhhhhhcccccccccccccCcccccccCCceEE
Confidence            38999995 9999999998864332       4666776554321 111    11 11   1    12356788999999


Q ss_pred             EEcCCCc
Q psy4626         137 VTATGNK  143 (542)
Q Consensus       137 i~atG~~  143 (542)
                      |.+.|.+
T Consensus        84 Vitag~~   90 (154)
T d5mdha1          84 ILVGSMP   90 (154)
T ss_dssp             EECCSCC
T ss_pred             EEecccC
Confidence            9988754

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=88.57  E-value=0.15  Score=47.12  Aligned_cols=89  Identities=16%  Similarity=0.122  Sum_probs=57.5

Q ss_pred             cccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcC--C---ceee--CHHHHh---cCCcEEEEcCCCc
Q psy4626          74 MFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMD--G---FSVV--KLNEVI---RTVDIVVTATGNK  143 (542)
Q Consensus        74 ~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~--G---~~v~--~l~e~l---~~aDvVi~atG~~  143 (542)
                      ..+|.+|+-+|+|. |-..| .+..++.+|+.+|+++.....|...  .   ..+.  +.....   ...|.|+.+.+..
T Consensus        68 l~~g~~VLdIG~Gs-Gy~ta-~La~l~~~V~aiE~~~~~~~~A~~~~~~~~nv~~~~~d~~~g~~~~~pfD~Iiv~~a~~  145 (224)
T d1vbfa_          68 LHKGQKVLEIGTGI-GYYTA-LIAEIVDKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEEEKPYDRVVVWATAP  145 (224)
T ss_dssp             CCTTCEEEEECCTT-SHHHH-HHHHHSSEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGCCEEEEEESSBBS
T ss_pred             hcccceEEEecCCC-CHHHH-HHHHHhcccccccccHHHHHHHHHHHhcccccccccCchhhcchhhhhHHHHHhhcchh
Confidence            35799999999994 55444 4455678999999999766544321  1   1222  111111   2359888765555


Q ss_pred             ccCCHHHHhccCCCeEEEe-ccC
Q psy4626         144 NVVTREHMDKMKNGCVVCN-MGH  165 (542)
Q Consensus       144 ~lI~~e~l~~mk~Gailvn-vG~  165 (542)
                      ++ ....+++||+||+++- +|.
T Consensus       146 ~i-p~~l~~qLk~GGrLV~pvg~  167 (224)
T d1vbfa_         146 TL-LCKPYEQLKEGGIMILPIGV  167 (224)
T ss_dssp             SC-CHHHHHTEEEEEEEEEEECS
T ss_pred             hh-hHHHHHhcCCCCEEEEEEcC
Confidence            44 4578899999998774 453

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=88.53  E-value=0.25  Score=45.03  Aligned_cols=58  Identities=17%  Similarity=0.409  Sum_probs=42.1

Q ss_pred             cEEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHHHHhc--CCcEEEEcCCC
Q psy4626          78 KQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIR--TVDIVVTATGN  142 (542)
Q Consensus        78 ktVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~--~aDvVi~atG~  142 (542)
                      .+|+|+|. |-||+.+++.|...|.+|+++++++...       .....++++++  .+|+||.+.+.
T Consensus         2 MKIlItGasGfiG~~l~~~L~~~g~~Vi~~~r~~~D~-------~d~~~~~~~l~~~~~d~vih~a~~   62 (281)
T d1vl0a_           2 MKILITGANGQLGREIQKQLKGKNVEVIPTDVQDLDI-------TNVLAVNKFFNEKKPNVVINCAAH   62 (281)
T ss_dssp             EEEEEESTTSHHHHHHHHHHTTSSEEEEEECTTTCCT-------TCHHHHHHHHHHHCCSEEEECCCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEeechhccC-------CCHHHHHHHHHHcCCCEEEeeccc
Confidence            36999998 9999999999999999999998654211       01112344553  67999987653

>d1sc6a2 c.23.12.1 (A:7-107,A:296-326) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=88.42  E-value=0.48  Score=39.92  Aligned_cols=55  Identities=9%  Similarity=0.171  Sum_probs=44.6

Q ss_pred             HHhcCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCCCcccChHhhcCCCcceee
Q psy4626         128 EVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEK  184 (542)
Q Consensus       128 e~l~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g~~eid~~aL~~~~l~v~~  184 (542)
                      +.++++|+++....+  -++++.|+.+++-..+...|.|-+.||+++..++++.+..
T Consensus        43 ~~~~~~d~ii~~~~~--~i~~~~i~~~p~Lk~I~~~gvG~D~IDl~aa~~~gI~V~n   97 (132)
T d1sc6a2          43 ESIRDAHFIGLRSRT--HLTEDVINAAEKLVAIGAFAIGTNQVDLDAAAKRGIPVFN   97 (132)
T ss_dssp             HHTTSCSEEEECSSC--CBCHHHHHHCSSCCEEEECSSCCTTBCHHHHHHTTCCEEC
T ss_pred             HhhcCCcEEEEeccc--ccChhhhhccccceeEEEecccccccCHHHHHhCCCEEEE
Confidence            456899998865433  5788999999999999999999889999999877665553

>d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class I ketol-acid reductoisomerase (KARI)
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=88.33  E-value=0.038  Score=49.68  Aligned_cols=54  Identities=13%  Similarity=0.177  Sum_probs=42.9

Q ss_pred             ccccCCeeeeehhhhcccCcEEEE---ccCCCCccCHhHHhcCCCCcEEEccCCCCc
Q psy4626         293 YYSMDGFSVVKLNEVIRTVDIVVT---ATGNKNVVTREHMDKMKNGCVVCNMGHSNT  346 (542)
Q Consensus       293 ea~mdG~~v~~~~~a~~~~d~~~t---~tg~~~vi~~~~~~~mk~gail~n~gh~~~  346 (542)
                      .|.-|||+|++++||+++|||+..   -+..+++-..+-...||+|+.|+=+=.|+.
T Consensus        55 ~A~~~Gf~v~~~~eA~~~aDiim~L~PD~~q~~vy~~~I~p~lk~g~~L~FaHGfnI  111 (182)
T d1np3a2          55 KAEAHGLKVADVKTAVAAADVVMILTPDEFQGRLYKEEIEPNLKKGATLAFAHGFSI  111 (182)
T ss_dssp             HHHHTTCEEECHHHHHHTCSEEEECSCHHHHHHHHHHHTGGGCCTTCEEEESCCHHH
T ss_pred             HHhhhccccccHHHHhhhcCeeeeecchHHHHHHHHHhhhhhcCCCcEEEEeccceE
Confidence            355799999999999999999998   344455555567788999999987766654

>d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sepiapterin reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.30  E-value=0.19  Score=46.62  Aligned_cols=42  Identities=21%  Similarity=0.261  Sum_probs=35.6

Q ss_pred             cccCcEEEEEcCC-hhHHHHHHHHHh---CCCEEEEEeCCchhhhh
Q psy4626          74 MFGGKQVVLCGYG-EVGKGCCQSLKG---LGCVIYITEIDPICALQ  115 (542)
Q Consensus        74 ~l~GktVvViG~G-~IG~~vA~~l~~---~Ga~Viv~d~dp~r~~~  115 (542)
                      .+.||.++|.|.+ -||+.+|+.|..   .|++|+++++++.++.+
T Consensus         3 ~L~gKvalITGas~GIG~aiA~~lA~~~~~G~~Vv~~~r~~~~l~~   48 (259)
T d1oaaa_           3 GLGCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQ   48 (259)
T ss_dssp             CCBSEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHhcccCCCEEEEEECCHHHHHH
Confidence            4789999999996 699999999864   69999999998876543

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=88.20  E-value=0.25  Score=46.99  Aligned_cols=37  Identities=22%  Similarity=0.262  Sum_probs=33.6

Q ss_pred             ccCcEEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCch
Q psy4626          75 FGGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPI  111 (542)
Q Consensus        75 l~GktVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp~  111 (542)
                      ..||+|+|+|. |-||+.+++.|...|.+|+++++++.
T Consensus         6 ~~~KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~~   43 (356)
T d1rkxa_           6 WQGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAP   43 (356)
T ss_dssp             HTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCS
T ss_pred             hCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCC
Confidence            46899999995 89999999999999999999998764

>d1vlva2 c.78.1.1 (A:153-313) Ornithine transcarbamoylase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Thermotoga maritima [TaxId: 2336]

Probab=88.12  E-value=1.5  Score=37.46  Aligned_cols=101  Identities=16%  Similarity=0.108  Sum_probs=63.1

Q ss_pred             ccCcEEEEEcC--ChhHHHHHHHHHhCCCEEEEEeCCchhh-----h----hhhcCCce---eeCHHHHhcCCcEEEEcC
Q psy4626          75 FGGKQVVLCGY--GEVGKGCCQSLKGLGCVIYITEIDPICA-----L----QACMDGFS---VVKLNEVIRTVDIVVTAT  140 (542)
Q Consensus        75 l~GktVvViG~--G~IG~~vA~~l~~~Ga~Viv~d~dp~r~-----~----~A~~~G~~---v~~l~e~l~~aDvVi~at  140 (542)
                      +.|.+|+++|-  .++-...+..+..+|+++.++-+.....     .    .+...+..   ..+++++++++|+|.+..
T Consensus         1 l~g~ki~~vGD~~nnV~~Sli~~~~~~g~~i~~~~P~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~ai~~aDviyt~~   80 (161)
T d1vlva2           1 LKGVKVVFMGDTRNNVATSLMIACAKMGMNFVACGPEELKPRSDVFKRCQEIVKETDGSVSFTSNLEEALAGADVVYTDV   80 (161)
T ss_dssp             STTCEEEEESCTTSHHHHHHHHHHHHTTCEEEEESCGGGCCCHHHHHHHHHHHHHHCCEEEEESCHHHHHTTCSEEEECC
T ss_pred             CCCCEEEEEcCCccHHHHHHHHHHHHcCCEEEEecchhhhhhhhHHHHHHHHHhhcCCceEEEecHHHhhhhhhheeccc
Confidence            46999999995  4688899999999999999985432211     1    12222322   346789999999999853


Q ss_pred             C-------C----------cccCCHHHHhccCCCeEEEeccCC--CcccChHhh
Q psy4626         141 G-------N----------KNVVTREHMDKMKNGCVVCNMGHS--NTEIDVNSL  175 (542)
Q Consensus       141 G-------~----------~~lI~~e~l~~mk~GailvnvG~g--~~eid~~aL  175 (542)
                      -       .          ....+.......++.+++.-.+-.  +.|++-+.+
T Consensus        81 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~MH~lP~~r~~Eis~~v~  134 (161)
T d1vlva2          81 WASMGEEDKEKERMALLKPYQVNERVMEMTGKSETIFMHCLPAVKGQEVTYEVI  134 (161)
T ss_dssp             CC----------CHHHHGGGCBCHHHHHTTCCTTCEEEECSCCCBTTTBCHHHH
T ss_pred             eeeecccccchhhhccccceeeeehhhhcccCCCeeEecCCCcccccccchhhh
Confidence            1       0          112222233346788888776653  345554433

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=88.05  E-value=0.44  Score=45.37  Aligned_cols=64  Identities=9%  Similarity=0.201  Sum_probs=44.7

Q ss_pred             CcEEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCchhhh--h-hhcCCceee-----C----HHHHhcCCcEEEEcC
Q psy4626          77 GKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICAL--Q-ACMDGFSVV-----K----LNEVIRTVDIVVTAT  140 (542)
Q Consensus        77 GktVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~--~-A~~~G~~v~-----~----l~e~l~~aDvVi~at  140 (542)
                      -|+|+|+|. |.||+.++..|...|.+|++.-+++....  . ....|++++     +    ++.++.++|.++...
T Consensus         3 kktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R~~~~~~~~~~~~~~~v~~~~gD~~d~~~~~~~a~~~~~~~~~~~   79 (350)
T d1xgka_           3 KKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIAEELQAIPNVTLFQGPLLNNVPLMDTLFEGAHLAFINT   79 (350)
T ss_dssp             CCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSHHHHHHHTSTTEEEEESCCTTCHHHHHHHHTTCSEEEECC
T ss_pred             CCEEEEECCChHHHHHHHHHHHhCCCeEEEEECCcchhhhhhhcccCCCEEEEeeCCCcHHHHHHHhcCCceEEeec
Confidence            579999996 99999999999999999999988765432  1 222354432     1    123456777776643

>d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Bacterial sepiapterin reductase
species: Chlorobium tepidum [TaxId: 1097]

Probab=87.89  E-value=0.56  Score=43.06  Aligned_cols=35  Identities=9%  Similarity=0.181  Sum_probs=29.7

Q ss_pred             EEEEcCC-hhHHHHHHHHHhCCCE-------EEEEeCCchhhh
Q psy4626          80 VVLCGYG-EVGKGCCQSLKGLGCV-------IYITEIDPICAL  114 (542)
Q Consensus        80 VvViG~G-~IG~~vA~~l~~~Ga~-------Viv~d~dp~r~~  114 (542)
                      |+|.|.+ -||+.+|+.|...|++       |+.+++++.++.
T Consensus         4 vlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~~~l~   46 (240)
T d2bd0a1           4 LLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLE   46 (240)
T ss_dssp             EEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHH
T ss_pred             EEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCHHHHH
Confidence            5688985 5999999999999997       899999887654

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=87.79  E-value=0.24  Score=45.41  Aligned_cols=89  Identities=17%  Similarity=0.225  Sum_probs=57.3

Q ss_pred             cccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhh----cCCce---ee--CHHHH---hcCCcEEEEcCC
Q psy4626          74 MFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQAC----MDGFS---VV--KLNEV---IRTVDIVVTATG  141 (542)
Q Consensus        74 ~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~----~~G~~---v~--~l~e~---l~~aDvVi~atG  141 (542)
                      ..+|.+|+.+|+|. |-..|..++-.|.+|+.+|+++.....|.    ..|..   +.  +..+.   -...|.|+.+.+
T Consensus        76 l~~g~~VLeIGsGs-GY~taila~l~g~~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~gd~~~g~~~~~pfD~Iiv~~a  154 (215)
T d1jg1a_          76 LKPGMNILEVGTGS-GWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPPKAPYDVIIVTAG  154 (215)
T ss_dssp             CCTTCCEEEECCTT-SHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEEEEECSB
T ss_pred             cCccceEEEecCCC-ChhHHHHHHhhCceeEEEeccHHHHHHHHHHHHHcCCceeEEEECccccCCcccCcceeEEeecc
Confidence            45799999999986 44444444444788999999986544432    33433   11  11111   245698887665


Q ss_pred             CcccCCHHHHhccCCCeEEEe-cc
Q psy4626         142 NKNVVTREHMDKMKNGCVVCN-MG  164 (542)
Q Consensus       142 ~~~lI~~e~l~~mk~Gailvn-vG  164 (542)
                      ... +....+++|++||+++- +|
T Consensus       155 ~~~-ip~~l~~qL~~gGrLv~pv~  177 (215)
T d1jg1a_         155 APK-IPEPLIEQLKIGGKLIIPVG  177 (215)
T ss_dssp             BSS-CCHHHHHTEEEEEEEEEEEC
T ss_pred             ccc-CCHHHHHhcCCCCEEEEEEc
Confidence            544 44678999999999874 44

>d2at2a2 c.78.1.1 (A:145-295) Aspartate carbamoyltransferase catalytic subunit {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Bacillus subtilis [TaxId: 1423]

Probab=87.77  E-value=0.49  Score=40.72  Aligned_cols=61  Identities=20%  Similarity=0.315  Sum_probs=46.5

Q ss_pred             cCcEEEEEcC---ChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce-eeCHHHHhcCCcEEEEc
Q psy4626          76 GGKQVVLCGY---GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVKLNEVIRTVDIVVTA  139 (542)
Q Consensus        76 ~GktVvViG~---G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~-v~~l~e~l~~aDvVi~a  139 (542)
                      .|.+|+++|=   +++....+..+..+|++++++.+......   ...+. ..+++++++++|+|.+.
T Consensus         2 ~gl~i~~vGD~~~srv~~Sl~~~~~~~g~~~~i~~P~~~~~~---~~~~~~~~~~~ea~~~aDviy~~   66 (151)
T d2at2a2           2 KGLTVSIHGDIKHSRVARSNAEVLTRLGARVLFSGPSEWQDE---ENTFGTYVSMDEAVESSDVVMLL   66 (151)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHHHcCCcccccCCchhhcc---ccceeEEEechhccccCceeeee
Confidence            4889999997   57999999999999999998864433222   22222 45788999999999884

>d1gdha2 c.23.12.1 (A:2-100,A:292-321) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=87.72  E-value=0.68  Score=38.61  Aligned_cols=91  Identities=11%  Similarity=0.185  Sum_probs=60.4

Q ss_pred             EEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCCcEEEEcCCCcccCCHHHHhccC-CC
Q psy4626          79 QVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHMDKMK-NG  157 (542)
Q Consensus        79 tVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~aDvVi~atG~~~lI~~e~l~~mk-~G  157 (542)
                      +|+|.  +++-......++..+ +|+.++.++.         ...-.+.+.++++|.++...++  -++++.|+.++ .-
T Consensus         3 kVlit--~~~~~~~~~~l~~~~-~v~~~~~~~~---------~s~~el~~~~~~~d~ii~~~~~--~i~~~~l~~~~~~L   68 (129)
T d1gdha2           3 KILIT--WPLPEAAMARARESY-DVIAHGDDPK---------ITIDEMIETAKSVDALLITLNE--KCRKEVIDRIPENI   68 (129)
T ss_dssp             EEEES--SCCCHHHHHHHHTTS-EEEECCSTTC---------CCHHHHHHHHTTCSEEEEETTS--CBCHHHHHHSCTTC
T ss_pred             EEEEe--CCCCHHHHHHHHcCC-cEEEeCCCCC---------CCHHHHHHHhcCCCEEEEcCCc--hhhhHHHhhhhhcc
Confidence            56664  466666777777554 6655542221         0011133456899988765444  47889999986 57


Q ss_pred             eEEEeccCCCcccChHhhcCCCccee
Q psy4626         158 CVVCNMGHSNTEIDVNSLRTPDLTWE  183 (542)
Q Consensus       158 ailvnvG~g~~eid~~aL~~~~l~v~  183 (542)
                      ..+.+.|.|-+.+|++++.++++.+.
T Consensus        69 K~I~~~gvG~d~ID~~~a~~~gI~V~   94 (129)
T d1gdha2          69 KCISTYSIGFDHIDLDACKARGIKVG   94 (129)
T ss_dssp             CEEEEESSCCTTBCHHHHHHTTCEEE
T ss_pred             eeeeecccCCccccHHHHHhCCCEEE
Confidence            78889999989999999987766544

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=87.44  E-value=0.2  Score=47.48  Aligned_cols=33  Identities=15%  Similarity=0.213  Sum_probs=30.5

Q ss_pred             EEEEcCChhHHHHHHHHHhCCCEEEEEeCCchh
Q psy4626          80 VVLCGYGEVGKGCCQSLKGLGCVIYITEIDPIC  112 (542)
Q Consensus        80 VvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r  112 (542)
                      |+|||.|+-|+..|..|+..|++|+++|..+..
T Consensus         8 VvVIG~G~AGl~AAl~aa~~G~~V~liEK~~~~   40 (336)
T d2bs2a2           8 SLVIGGGLAGLRAAVATQQKGLSTIVLSLIPVK   40 (336)
T ss_dssp             EEEECCSHHHHHHHHHHHTTTCCEEEECSSCGG
T ss_pred             EEEECcCHHHHHHHHHHHHCCCCEEEEecCCCC
Confidence            999999999999999999999999999977643

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.38  E-value=0.33  Score=45.89  Aligned_cols=64  Identities=16%  Similarity=0.189  Sum_probs=41.8

Q ss_pred             cEEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCch-hhhhh----hcCCceeeC---HHHHhcCCcEEEEcCC
Q psy4626          78 KQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPI-CALQA----CMDGFSVVK---LNEVIRTVDIVVTATG  141 (542)
Q Consensus        78 ktVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp~-r~~~A----~~~G~~v~~---l~e~l~~aDvVi~atG  141 (542)
                      |+|+|+|. |-||+.++..|...|.+|+++|.... +....    ....++..+   .+.+..++|+||-+.+
T Consensus         2 KKIlVtG~sGfiG~~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~VihlAa   74 (312)
T d2b69a1           2 KRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPLYIEVDQIYHLAS   74 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGGGTGGGTTCTTEEEEECCTTSCCCCCCSEEEECCS
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCCcCCHHHHHHhcCCCceEEEehHHHHHHHcCCCEEEECcc
Confidence            68999998 88999999999999999999985221 11110    011122221   2234467899887654

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=87.21  E-value=0.23  Score=45.87  Aligned_cols=32  Identities=22%  Similarity=0.333  Sum_probs=29.5

Q ss_pred             EEEEEcCChhHHHHHHHHHhCCCEEEEEeCCc
Q psy4626          79 QVVLCGYGEVGKGCCQSLKGLGCVIYITEIDP  110 (542)
Q Consensus        79 tVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp  110 (542)
                      -++|||.|+.|..+|..+..+|.+|.+++..+
T Consensus        44 DvvVIGgG~aG~~aA~~~a~~G~kv~vve~~~   75 (261)
T d1mo9a1          44 DAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWP   75 (261)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCeEEEEeccC
Confidence            39999999999999999999999999998654

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=87.06  E-value=0.17  Score=48.13  Aligned_cols=34  Identities=24%  Similarity=0.429  Sum_probs=30.8

Q ss_pred             cEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCch
Q psy4626          78 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPI  111 (542)
Q Consensus        78 ktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~  111 (542)
                      --|+|||.|..|..+|..|+..|++|+++|..+.
T Consensus        20 ~DVvVIGaG~aGl~AA~~aa~~G~~V~vlEK~~~   53 (317)
T d1qo8a2          20 TQVLVVGAGSAGFNASLAAKKAGANVILVDKAPF   53 (317)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHTCCEEEECSSSS
T ss_pred             cCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            3599999999999999999999999999997654

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=86.96  E-value=1  Score=39.70  Aligned_cols=68  Identities=15%  Similarity=0.192  Sum_probs=44.6

Q ss_pred             cCcEEEEEcC-ChhHHHHHHHHHh---CCC----EEEEEeCCchhh-hhhh----cCC-c---e----eeCHHHHhcCCc
Q psy4626          76 GGKQVVLCGY-GEVGKGCCQSLKG---LGC----VIYITEIDPICA-LQAC----MDG-F---S----VVKLNEVIRTVD  134 (542)
Q Consensus        76 ~GktVvViG~-G~IG~~vA~~l~~---~Ga----~Viv~d~dp~r~-~~A~----~~G-~---~----v~~l~e~l~~aD  134 (542)
                      .--+|.|+|+ |.||..++..+..   +|.    .+..+|+++.+. .++.    .+. +   .    ..+..+.++++|
T Consensus        23 ~~~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~~~~~~l~g~~mdl~d~a~~~~~~~~~~~~~~~~~~~aD  102 (175)
T d7mdha1          23 KLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSIGIDPYEVFEDVD  102 (175)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTTCS
T ss_pred             CCcEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCccccchhcchhhhhcccccccccCccccccchhhccCCc
Confidence            3558999996 9999999998875   453    556667665432 1111    111 1   1    224567889999


Q ss_pred             EEEEcCCCc
Q psy4626         135 IVVTATGNK  143 (542)
Q Consensus       135 vVi~atG~~  143 (542)
                      +||.+.|.+
T Consensus       103 vVvi~ag~~  111 (175)
T d7mdha1         103 WALLIGAKP  111 (175)
T ss_dssp             EEEECCCCC
T ss_pred             eEEEeeccC
Confidence            999988754

>d1ebfa1 c.2.1.3 (A:2-150,A:341-359) Homoserine dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Homoserine dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=86.93  E-value=0.85  Score=39.65  Aligned_cols=87  Identities=15%  Similarity=0.177  Sum_probs=50.1

Q ss_pred             EEEEEcCChhHHHHHHHHHhC--CC--EEEEE-eCCchh--------------hhhhhcCCceeeCHHH---Hh---cCC
Q psy4626          79 QVVLCGYGEVGKGCCQSLKGL--GC--VIYIT-EIDPIC--------------ALQACMDGFSVVKLNE---VI---RTV  133 (542)
Q Consensus        79 tVvViG~G~IG~~vA~~l~~~--Ga--~Viv~-d~dp~r--------------~~~A~~~G~~v~~l~e---~l---~~a  133 (542)
                      +|+++|+|.||+++++.+...  +.  +|..+ +.+...              ............+.+.   .+   ...
T Consensus         6 ~I~l~G~G~VG~~l~~~l~~~~~~l~~~v~~i~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (168)
T d1ebfa1           6 NVAVIGAGVVGSAFLDQLLAMKSTITYNLVLLAEAERSLISKDFSPLNVGSDWKAALAASTTKTLPLDDLIAHLKTSPKP   85 (168)
T ss_dssp             EEEEECCSHHHHHHHHHHHHCCCSSEEEEEEEECSSBEEECSSCSCCSCTTCHHHHHHTCCCBCCCHHHHHHHHTTCSSC
T ss_pred             EEEEEeCCHHHHHHHHHHHHhHHHhhhheEEEEEeeeeeecccccchHhhhhhhhhhhhcccccccHHHHHHHhccCCCc
Confidence            689999999999999988754  33  33332 211100              0000011111122221   11   467


Q ss_pred             cEEEEcCCCcccCCHHHHhccCCCeEEEeccCC
Q psy4626         134 DIVVTATGNKNVVTREHMDKMKNGCVVCNMGHS  166 (542)
Q Consensus       134 DvVi~atG~~~lI~~e~l~~mk~GailvnvG~g  166 (542)
                      |++++|++...... ...+.++.|.-+|.+--.
T Consensus        86 ~vivd~t~~~~~~~-~~~~aL~~G~hVVTANK~  117 (168)
T d1ebfa1          86 VILVDNTSSAYIAG-FYTKFVENGISIATPNKK  117 (168)
T ss_dssp             EEEEECSCCHHHHT-THHHHHHTTCEEECCCCG
T ss_pred             eEEEEecCChHHHH-HHHHHHHcCCeEEecCcc
Confidence            89999998766553 455678899998876543

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=86.87  E-value=0.27  Score=43.21  Aligned_cols=32  Identities=22%  Similarity=0.206  Sum_probs=28.1

Q ss_pred             EEEEEcCChhHHHHHHHHHhCC--CEEEEEeCCc
Q psy4626          79 QVVLCGYGEVGKGCCQSLKGLG--CVIYITEIDP  110 (542)
Q Consensus        79 tVvViG~G~IG~~vA~~l~~~G--a~Viv~d~dp  110 (542)
                      +|+|+|.|++|..+|..|+.++  .+|+++++++
T Consensus         2 KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~   35 (198)
T d1nhpa1           2 KVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGD   35 (198)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSS
T ss_pred             EEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence            7999999999999999998774  5899998754

>d1gado1 c.2.1.3 (O:0-148,O:313-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Escherichia coli [TaxId: 562]

Probab=86.85  E-value=0.43  Score=42.05  Aligned_cols=29  Identities=17%  Similarity=0.321  Sum_probs=24.5

Q ss_pred             EEEEEcCChhHHHHHHHHHhCC-CEEEEEe
Q psy4626          79 QVVLCGYGEVGKGCCQSLKGLG-CVIYITE  107 (542)
Q Consensus        79 tVvViG~G~IG~~vA~~l~~~G-a~Viv~d  107 (542)
                      +|+|=|+|+||+.+.+.+.... .+|+++.
T Consensus         3 kigINGFGRIGR~v~R~~~~~~~i~ivaIN   32 (166)
T d1gado1           3 KVGINGFGRIGRIVFRAAQKRSDIEIVAIN   32 (166)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCSSEEEEEEE
T ss_pred             EEEEECCcHHHHHHHHHHhhCCCeEEEEEe
Confidence            6899999999999999988774 5777765

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=86.39  E-value=0.86  Score=43.37  Aligned_cols=66  Identities=18%  Similarity=0.246  Sum_probs=45.0

Q ss_pred             cCcEEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCchhhhhh--hcCCceeeC---H---HHHhcCCcEEEEcCC
Q psy4626          76 GGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQA--CMDGFSVVK---L---NEVIRTVDIVVTATG  141 (542)
Q Consensus        76 ~GktVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A--~~~G~~v~~---l---~e~l~~aDvVi~atG  141 (542)
                      ...+|+|+|. |-||+.++..|...|-+|+++|+.+......  ....+...+   .   .++++++|.|+.+.+
T Consensus        14 ~nMKILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vih~a~   88 (363)
T d2c5aa1          14 ENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTEDMFCDEFHLVDLRVMENCLKVTEGVDHVFNLAA   88 (363)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCSSSCGGGTCSEEEECCTTSHHHHHHHHTTCSEEEECCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCCccchhhhcccCcEEEeechhHHHHHHHhhcCCeEeeccc
Confidence            5778999995 9999999999999999999998654322111  111122222   2   234578999888653

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=86.17  E-value=0.098  Score=45.55  Aligned_cols=31  Identities=26%  Similarity=0.275  Sum_probs=25.9

Q ss_pred             cEEEEEcCChhHHHHHHHHHhCCCEEEEEeC
Q psy4626          78 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEI  108 (542)
Q Consensus        78 ktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~  108 (542)
                      ++|+|+|.|++|..+|..|+.+|.+|.++.+
T Consensus         4 a~VvIIGgG~~G~e~A~~l~~~g~~v~i~~~   34 (183)
T d1d7ya1           4 APVVVLGAGLASVSFVAELRQAGYQGLITVV   34 (183)
T ss_dssp             SSEEEECCSHHHHHHHHHHHHHTCCSCEEEE
T ss_pred             CCEEEECccHHHHHHHHHHHhcCCceEEEEE
Confidence            3599999999999999999999976555543

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=86.06  E-value=0.66  Score=42.43  Aligned_cols=90  Identities=12%  Similarity=0.125  Sum_probs=58.2

Q ss_pred             ccCcEEEEEcCC--hhHHHHHHHHHhCCC----EEEEEeCCchhhhhhhcC------------Cceee--CHHHH---hc
Q psy4626          75 FGGKQVVLCGYG--EVGKGCCQSLKGLGC----VIYITEIDPICALQACMD------------GFSVV--KLNEV---IR  131 (542)
Q Consensus        75 l~GktVvViG~G--~IG~~vA~~l~~~Ga----~Viv~d~dp~r~~~A~~~------------G~~v~--~l~e~---l~  131 (542)
                      .+|.+|+.+|+|  .....+++.+...|+    +|+.+|+++.....|...            ...+.  +..+.   -.
T Consensus        79 ~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~~d~~~~~~~~~  158 (223)
T d1r18a_          79 KPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPPNA  158 (223)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCGGGC
T ss_pred             CCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEeccccccccccc
Confidence            479999999886  455666777777774    899999998654444211            11111  11111   13


Q ss_pred             CCcEEEEcCCCcccCCHHHHhccCCCeEEEe-ccC
Q psy4626         132 TVDIVVTATGNKNVVTREHMDKMKNGCVVCN-MGH  165 (542)
Q Consensus       132 ~aDvVi~atG~~~lI~~e~l~~mk~Gailvn-vG~  165 (542)
                      ..|.|+.+.+... +....+++||+||+++- +|.
T Consensus       159 ~fD~Iiv~~a~~~-~p~~l~~~Lk~gG~lV~pvg~  192 (223)
T d1r18a_         159 PYNAIHVGAAAPD-TPTELINQLASGGRLIVPVGP  192 (223)
T ss_dssp             SEEEEEECSCBSS-CCHHHHHTEEEEEEEEEEESC
T ss_pred             ceeeEEEEeechh-chHHHHHhcCCCcEEEEEEec
Confidence            5698888665544 44578899999999864 553

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=85.78  E-value=0.37  Score=41.43  Aligned_cols=67  Identities=12%  Similarity=0.129  Sum_probs=40.6

Q ss_pred             CcEEEEEcC-ChhHHHHHHHHHhCCC-------EEEEEeCCchh--hhhhh---cCC----ce----eeCHHHHhcCCcE
Q psy4626          77 GKQVVLCGY-GEVGKGCCQSLKGLGC-------VIYITEIDPIC--ALQAC---MDG----FS----VVKLNEVIRTVDI  135 (542)
Q Consensus        77 GktVvViG~-G~IG~~vA~~l~~~Ga-------~Viv~d~dp~r--~~~A~---~~G----~~----v~~l~e~l~~aDv  135 (542)
                      -.+|.|+|+ |.+|..++..+...+.       ....++.+...  .....   ...    ..    ..+..+.++++|+
T Consensus         4 p~KV~IiGA~G~VG~~~a~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~adv   83 (154)
T d1y7ta1           4 PVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPLLAGLEATDDPKVAFKDADY   83 (154)
T ss_dssp             CEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTTCSE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhccccccccchhHhHhccccchhhHcCchhhhhccccccccccccCCchhhhcccccE
Confidence            348999996 9999999999986543       12333333221  11110   111    11    1234678899999


Q ss_pred             EEEcCCCc
Q psy4626         136 VVTATGNK  143 (542)
Q Consensus       136 Vi~atG~~  143 (542)
                      ||.+.|.+
T Consensus        84 ViitaG~~   91 (154)
T d1y7ta1          84 ALLVGAAP   91 (154)
T ss_dssp             EEECCCCC
T ss_pred             EEeecCcC
Confidence            99988753

>d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=85.65  E-value=0.42  Score=43.61  Aligned_cols=26  Identities=19%  Similarity=0.210  Sum_probs=23.4

Q ss_pred             ccccCcEEEEEcCChhHHHHHHHHHh
Q psy4626          73 VMFGGKQVVLCGYGEVGKGCCQSLKG   98 (542)
Q Consensus        73 ~~l~GktVvViG~G~IG~~vA~~l~~   98 (542)
                      ..+.|++|+|||.|.++..||+.|..
T Consensus        35 ~~~~gk~VvVIGgGNVAlD~aR~l~r   60 (225)
T d1cjca1          35 PDLSCDTAVILGQGNVALDVARILLT   60 (225)
T ss_dssp             CCTTSSEEEEESCSHHHHHHHHHHHS
T ss_pred             ccccCceEEEECCchhHHHHHHHHhc
Confidence            45679999999999999999999876

>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha-hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=85.48  E-value=0.42  Score=43.45  Aligned_cols=34  Identities=21%  Similarity=0.300  Sum_probs=29.8

Q ss_pred             cEEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCch
Q psy4626          78 KQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPI  111 (542)
Q Consensus        78 ktVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp~  111 (542)
                      |.|+|.|. +-||+.+|+.|...|++|+++|+++.
T Consensus         2 kVvlITGas~GIG~aiA~~la~~Ga~V~~~~~~~~   36 (257)
T d1fjha_           2 SIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDA   36 (257)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECChH
Confidence            56889997 56999999999999999999998754

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=85.42  E-value=1.2  Score=41.19  Aligned_cols=89  Identities=16%  Similarity=0.134  Sum_probs=54.6

Q ss_pred             cccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhc----CC----cee--eCHHHH-h--cCCcEEEEcC
Q psy4626          74 MFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACM----DG----FSV--VKLNEV-I--RTVDIVVTAT  140 (542)
Q Consensus        74 ~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~----~G----~~v--~~l~e~-l--~~aDvVi~at  140 (542)
                      .-+|.+|+=+|+|.=+ .....++..|++|+.+|++|.....|..    .|    +.+  .+..++ +  ...|+|+...
T Consensus        65 l~~~~~vLDiGcG~G~-~~~~la~~~~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l~~~~~sfD~V~~~~  143 (282)
T d2o57a1          65 LQRQAKGLDLGAGYGG-AARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFIWSQD  143 (282)
T ss_dssp             CCTTCEEEEETCTTSH-HHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCTTCEEEEEEES
T ss_pred             CCCCCEEEEeCCCCcH-HHhhhhccCCcEEEEEeccchhhhhhhcccccccccccccccccccccccccccccchhhccc
Confidence            3479999999999644 3334445569999999999975443321    12    222  222222 1  3578887643


Q ss_pred             CCcccCC-----HHHHhccCCCeEEEec
Q psy4626         141 GNKNVVT-----REHMDKMKNGCVVCNM  163 (542)
Q Consensus       141 G~~~lI~-----~e~l~~mk~Gailvnv  163 (542)
                      .-.++-+     .+..+.|||||.++-.
T Consensus       144 ~l~h~~d~~~~l~~~~~~LkpgG~l~~~  171 (282)
T d2o57a1         144 AFLHSPDKLKVFQECARVLKPRGVMAIT  171 (282)
T ss_dssp             CGGGCSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred             hhhhccCHHHHHHHHHHhcCCCcEEEEE
Confidence            2222222     4566789999987754

>d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.34  E-value=0.3  Score=43.30  Aligned_cols=40  Identities=25%  Similarity=0.388  Sum_probs=34.3

Q ss_pred             hhhhcccCcEEEEccCCCCc-cCHhHHhcCCCCcEEEccCCCCc
Q psy4626         304 LNEVIRTVDIVVTATGNKNV-VTREHMDKMKNGCVVCNMGHSNT  346 (542)
Q Consensus       304 ~~~a~~~~d~~~t~tg~~~v-i~~~~~~~mk~gail~n~gh~~~  346 (542)
                      +++....+||+|+++|.++. |+.+   ..|+|++++++|-..+
T Consensus        91 lk~~~~~aDIvIsavG~p~~~i~~d---~ik~GavvIDvGi~~~  131 (171)
T d1edza1          91 LKKCSLDSDVVITGVPSENYKFPTE---YIKEGAVCINFACTKN  131 (171)
T ss_dssp             HHHHHHHCSEEEECCCCTTCCBCTT---TSCTTEEEEECSSSCC
T ss_pred             HhhccccCCEEEEccCCCccccChh---hcccCceEeecccccc
Confidence            57788899999999999996 7776   4689999999997654

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=85.19  E-value=0.29  Score=44.49  Aligned_cols=36  Identities=17%  Similarity=0.362  Sum_probs=31.9

Q ss_pred             CcEEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCchh
Q psy4626          77 GKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPIC  112 (542)
Q Consensus        77 GktVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp~r  112 (542)
                      -|+|+|+|. |.||+.++..|...|.+|++.++++..
T Consensus         3 kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~~~   39 (307)
T d1qyca_           3 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTA   39 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCT
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCCcc
Confidence            368999997 999999999999999999999887643

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=85.01  E-value=0.7  Score=41.59  Aligned_cols=86  Identities=14%  Similarity=0.072  Sum_probs=53.7

Q ss_pred             ccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhc----CCc--e--eeCHHHH-h-cCCcEEEEcCCCcc
Q psy4626          75 FGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACM----DGF--S--VVKLNEV-I-RTVDIVVTATGNKN  144 (542)
Q Consensus        75 l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~----~G~--~--v~~l~e~-l-~~aDvVi~atG~~~  144 (542)
                      ..+++|+=+|+|. |..+.. +...|++|+.+|.+|.-...|..    .+.  .  ..+.+++ + ...|+|+..-++-.
T Consensus        40 ~~~~~iLDiGcGt-G~~~~~-l~~~~~~v~gvD~s~~mi~~a~~~~~~~~~~i~~~~~d~~~l~~~~~fD~I~~~~~~~~  117 (251)
T d1wzna1          40 REVRRVLDLACGT-GIPTLE-LAERGYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKNEFDAVTMFFSTIM  117 (251)
T ss_dssp             SCCCEEEEETCTT-CHHHHH-HHHTTCEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCCSCEEEEEECSSGGG
T ss_pred             CCCCEEEEeCCCC-Cccchh-hcccceEEEEEeeccccccccccccccccccchheehhhhhcccccccchHhhhhhhhh
Confidence            4678999999998 765444 55679999999999865444432    222  1  1233332 1 45788877544333


Q ss_pred             cCC--------HHHHhccCCCeEEEe
Q psy4626         145 VVT--------REHMDKMKNGCVVCN  162 (542)
Q Consensus       145 lI~--------~e~l~~mk~Gailvn  162 (542)
                      .++        .+.-+.|||||+++-
T Consensus       118 ~~~~~~~~~~L~~~~~~LkpgG~lii  143 (251)
T d1wzna1         118 YFDEEDLRKLFSKVAEALKPGGVFIT  143 (251)
T ss_dssp             GSCHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             cCChHHHHHHHHHHHHHcCCCcEEEE
Confidence            332        234567899998874

>d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.98  E-value=0.34  Score=42.88  Aligned_cols=40  Identities=35%  Similarity=0.516  Sum_probs=34.7

Q ss_pred             ehhhhcccCcEEEEccCCCCccCHhHHhcCCCCcEEEccCCCC
Q psy4626         303 KLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSN  345 (542)
Q Consensus       303 ~~~~a~~~~d~~~t~tg~~~vi~~~~~~~mk~gail~n~gh~~  345 (542)
                      .+.+-.++|||+|+++|.++.|+.+   ..|+|++++++|-.-
T Consensus        75 ~l~~~~~~aDivi~a~G~~~~i~~~---~vk~g~iviDvgi~~  114 (170)
T d1a4ia1          75 HLDEEVNKGDILVVATGQPEMVKGE---WIKPGAIVIDCGINY  114 (170)
T ss_dssp             SHHHHHTTCSEEEECCCCTTCBCGG---GSCTTCEEEECCCBC
T ss_pred             cHHHHHhhccchhhccccccccccc---cccCCCeEeccCccc
Confidence            3467789999999999999999987   569999999999654

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.88  E-value=0.64  Score=42.42  Aligned_cols=89  Identities=15%  Similarity=0.065  Sum_probs=55.8

Q ss_pred             ccCcEEEEEcCChhHHHHHHH--HHhCCCEEEEEeCCchhhhhhhc----CCc--------eee--CHHHH---hcCCcE
Q psy4626          75 FGGKQVVLCGYGEVGKGCCQS--LKGLGCVIYITEIDPICALQACM----DGF--------SVV--KLNEV---IRTVDI  135 (542)
Q Consensus        75 l~GktVvViG~G~IG~~vA~~--l~~~Ga~Viv~d~dp~r~~~A~~----~G~--------~v~--~l~e~---l~~aDv  135 (542)
                      .+|.+|+-+|+|. |..++..  +.+...+|+.+|+++.....|..    .+.        .+.  +..+.   -...|+
T Consensus        75 ~~g~~VLdiG~Gs-Gy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~~~~~~~~fD~  153 (224)
T d1i1na_          75 HEGAKALDVGSGS-GILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDA  153 (224)
T ss_dssp             CTTCEEEEETCTT-SHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEEE
T ss_pred             CCCCeEEEecCCC-CHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeecccccchhhhhhh
Confidence            4799999999996 4333333  33446699999999876544421    111        111  11111   135799


Q ss_pred             EEEcCCCcccCCHHHHhccCCCeEEEe-ccC
Q psy4626         136 VVTATGNKNVVTREHMDKMKNGCVVCN-MGH  165 (542)
Q Consensus       136 Vi~atG~~~lI~~e~l~~mk~Gailvn-vG~  165 (542)
                      |+.+.+..++. .+.+++||+||+++- +|.
T Consensus       154 I~~~~~~~~ip-~~l~~~LkpGG~LV~pv~~  183 (224)
T d1i1na_         154 IHVGAAAPVVP-QALIDQLKPGGRLILPVGP  183 (224)
T ss_dssp             EEECSBBSSCC-HHHHHTEEEEEEEEEEESC
T ss_pred             hhhhcchhhcC-HHHHhhcCCCcEEEEEEcc
Confidence            88876555544 578999999999874 553

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=84.82  E-value=1.1  Score=44.82  Aligned_cols=88  Identities=18%  Similarity=0.278  Sum_probs=59.4

Q ss_pred             cccCcEEEEEcCChhHHHHHHHHHhCCC-EEEEEeCCchhhhhhhc---------------CCce-e---------eCHH
Q psy4626          74 MFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACM---------------DGFS-V---------VKLN  127 (542)
Q Consensus        74 ~l~GktVvViG~G~IG~~vA~~l~~~Ga-~Viv~d~dp~r~~~A~~---------------~G~~-v---------~~l~  127 (542)
                      .-+|++++=+|+|. |..+.++++..|+ +|+.+|++|.....|..               .+.. .         ...+
T Consensus       214 Lkpgd~fLDLGCG~-G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~~~f~~~~~~d  292 (406)
T d1u2za_         214 LKKGDTFMDLGSGV-GNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNNRVA  292 (406)
T ss_dssp             CCTTCEEEEESCTT-SHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTTCHHHH
T ss_pred             CCCCCEEEeCCCCC-cHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeeeechhhccccc
Confidence            45799999999996 6666677777776 89999999976544421               1111 0         0123


Q ss_pred             HHhcCCcEEEEcCC--C---cccCCHHHHhccCCCeEEEec
Q psy4626         128 EVIRTVDIVVTATG--N---KNVVTREHMDKMKNGCVVCNM  163 (542)
Q Consensus       128 e~l~~aDvVi~atG--~---~~lI~~e~l~~mk~Gailvnv  163 (542)
                      +.+..+|+|+...-  .   ...+ .+.++.||+||.++..
T Consensus       293 ~~~~~adVV~inn~~f~~~l~~~L-~ei~r~LKPGGrIVs~  332 (406)
T d1u2za_         293 ELIPQCDVILVNNFLFDEDLNKKV-EKILQTAKVGCKIISL  332 (406)
T ss_dssp             HHGGGCSEEEECCTTCCHHHHHHH-HHHHTTCCTTCEEEES
T ss_pred             cccccceEEEEecccCchHHHHHH-HHHHHhcCCCcEEEEe
Confidence            55688999987431  1   1223 4678899999999874

>d1gq2a1 c.2.1.7 (A:280-580) Mitochondrial NAD(P)-dependent malic enzyme {Domestic pigeon (Columba livia) [TaxId: 8932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Domestic pigeon (Columba livia) [TaxId: 8932]

Probab=84.79  E-value=1.8  Score=41.42  Aligned_cols=98  Identities=12%  Similarity=0.255  Sum_probs=66.8

Q ss_pred             hhcCccccCcEEEEEcCChhHHHHHHHHHhC----CC-------EEEEEeCCchh-----------hhhhhcCCceeeCH
Q psy4626          69 RSTDVMFGGKQVVLCGYGEVGKGCCQSLKGL----GC-------VIYITEIDPIC-----------ALQACMDGFSVVKL  126 (542)
Q Consensus        69 r~~~~~l~GktVvViG~G~IG~~vA~~l~~~----Ga-------~Viv~d~dp~r-----------~~~A~~~G~~v~~l  126 (542)
                      +.++..+...+++|+|+|.-|.++|..+...    |+       +++++|+...-           ...+. ......++
T Consensus        17 ki~gk~l~d~kiV~~GAGsAg~gia~~l~~~~~~~G~~~~~a~~~i~l~D~kGlv~~~R~~l~~~k~~~a~-~~~~~~~l   95 (298)
T d1gq2a1          17 RITKNRLSDHTVLFQGAGEAALGIANLIVMAMQKEGVSKEEAIKRIWMVDSKGLIVKGRASLTPEKEHFAH-EHCEMKNL   95 (298)
T ss_dssp             HHHTSCGGGCCEEEECCSHHHHHHHHHHHHHHHHHTCCHHHHHTTEEEEETTEECBTTCSSCCTTGGGGCB-SCCCCCCH
T ss_pred             HHhCCCHHHcEEEEECccHHHHHHHHHHHHHHHHcCCChhhccceEEEEeCCCcccCCCcccCHHHHHHHH-Hhhhhhhh
Confidence            3456778899999999999999988887643    32       68888865421           11111 11122345


Q ss_pred             HHHhc--CCcEEEEcCCCcccCCHHHHh---ccCCCeEEEeccCCC
Q psy4626         127 NEVIR--TVDIVVTATGNKNVVTREHMD---KMKNGCVVCNMGHSN  167 (542)
Q Consensus       127 ~e~l~--~aDvVi~atG~~~lI~~e~l~---~mk~GailvnvG~g~  167 (542)
                      .++++  .+++++-+++..++++++.++   .|.+.-+|.-.+...
T Consensus        96 ~~~i~~vkptvliG~s~~~g~ft~evv~~ma~~~~~PIIFaLSNPt  141 (298)
T d1gq2a1          96 EDIVKDIKPTVLIGVAAIGGAFTQQILQDMAAFNKRPIIFALSNPT  141 (298)
T ss_dssp             HHHHHHHCCSEEEECSCCTTCSCHHHHHHHHHHCSSCEEEECCSSG
T ss_pred             HHHhhccChheeEecccccCcCCHHHHHHHHhhCCCCEEEEccCCC
Confidence            55553  588999999888999988776   445777887777653

>d1tuga1 c.78.1.1 (A:1-150,A:151-310) Aspartate carbamoyltransferase catalytic subunit {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Escherichia coli [TaxId: 562]

Probab=84.70  E-value=4.1  Score=38.71  Aligned_cols=117  Identities=20%  Similarity=0.264  Sum_probs=69.8

Q ss_pred             ccceeecCch----hhhHHHHhHHHHHHHHHHHHHhhcCccccCcEEEEEcC---ChhHHHHHHHHHhCC-CEEEEEeCC
Q psy4626          38 TVPAMNVNDS----VTKTKFDNLYMCRESIIDSLKRSTDVMFGGKQVVLCGY---GEVGKGCCQSLKGLG-CVIYITEID  109 (542)
Q Consensus        38 ~~PV~~vn~s----~~K~~fd~~~g~~~s~~~ai~r~~~~~l~GktVvViG~---G~IG~~vA~~l~~~G-a~Viv~d~d  109 (542)
                      .+||||.-++    ++-.+.|-.         .+.+..+ .+.|.+|+++|-   +++-...+..+..+| +++.++-+.
T Consensus       121 ~vPVINAg~~~~~HP~Q~LaD~~---------Ti~e~~g-~l~~~~i~~vGD~~~~~v~~S~~~~~~~~~~~~~~i~~P~  190 (310)
T d1tuga1         121 NVPVLNAGDGSNQHPTQTLLDLF---------TIQETQG-RLDNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPD  190 (310)
T ss_dssp             TSCEEEEEETTSCCHHHHHHHHH---------HHHHHHS-CSSSCEEEEESCTTTCHHHHHHHHHHTTSSSCEEEEECCG
T ss_pred             CccEEECCCCcccchHHHHHHHH---------HHHHHcC-CcccceEEEEeccccCcchHHHHHHHHhccCceEEEeCCc
Confidence            5799986333    333333321         2333323 478999999997   667777777788885 688888543


Q ss_pred             chh-----hhhhhcCCce---eeCHHHHhcCCcEEEEcCCC--------------cccCCHHHHhccCCCeEEEecc
Q psy4626         110 PIC-----ALQACMDGFS---VVKLNEVIRTVDIVVTATGN--------------KNVVTREHMDKMKNGCVVCNMG  164 (542)
Q Consensus       110 p~r-----~~~A~~~G~~---v~~l~e~l~~aDvVi~atG~--------------~~lI~~e~l~~mk~GailvnvG  164 (542)
                      ...     ...+...|..   ..++++++.++|+|..+...              ...++.+.++.+++++++.-+.
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~d~~~a~~~aDvvy~~~~~~e~~~~~~~~~~~~~~~v~~~~l~~a~~~~i~MHcL  267 (310)
T d1tuga1         191 ALAMPQYILDMLDEKGIAWSLHSSIEEVMAEVDILYMTRVQKERLDPSEYANVKAQFVLRASDLHNAKANMKVLHPL  267 (310)
T ss_dssp             GGCCCHHHHHHHHTTTCCEEEESCGGGTTTTCSEEEECCCCGGGSCHHHHHTTTTSSCBCGGGGTTSCSSCEEECCS
T ss_pred             ccccchhcccccccccceeeeeechhhhccCCceeeecccchhhhcccchhhhhhhhhhhHHHHhcCCCCcEEeeCC
Confidence            321     1223334433   34678899999999975321              1224455566666666665444

>d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein PA4017
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=84.56  E-value=0.49  Score=41.72  Aligned_cols=63  Identities=17%  Similarity=0.175  Sum_probs=41.5

Q ss_pred             cEEEEEcC-ChhHHHHHHHHHhCCC--EEEEEeCCchhhhhhhcCCceeeCHHHH----hcCCcEEEEcCCC
Q psy4626          78 KQVVLCGY-GEVGKGCCQSLKGLGC--VIYITEIDPICALQACMDGFSVVKLNEV----IRTVDIVVTATGN  142 (542)
Q Consensus        78 ktVvViG~-G~IG~~vA~~l~~~Ga--~Viv~d~dp~r~~~A~~~G~~v~~l~e~----l~~aDvVi~atG~  142 (542)
                      |+|+|+|+ |.||+.+++.|...|-  +|++..+++.....  .......+..+.    ....|.||.|.|.
T Consensus         3 KkIlItGatG~iG~~lv~~L~~~~~~~~v~~~~r~~~~~~~--~~~~~~~d~~~~~~~~~~~~d~vi~~~g~   72 (212)
T d2a35a1           3 KRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALAEHP--RLDNPVGPLAELLPQLDGSIDTAFCCLGT   72 (212)
T ss_dssp             CEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCCCCT--TEECCBSCHHHHGGGCCSCCSEEEECCCC
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCCeEEEEEEeCCchhhcc--cccccccchhhhhhccccchheeeeeeee
Confidence            79999999 9999999999999996  67766655432111  001112333332    2567999998763

>d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative carbonyl reductase sniffer
species: Caenorhabditis elegans [TaxId: 6239]

Probab=84.25  E-value=0.96  Score=41.31  Aligned_cols=40  Identities=28%  Similarity=0.174  Sum_probs=33.3

Q ss_pred             cCcEEEEEcCC-hhHHHHHHHHHhCCC--EEEEEeCCchhhhh
Q psy4626          76 GGKQVVLCGYG-EVGKGCCQSLKGLGC--VIYITEIDPICALQ  115 (542)
Q Consensus        76 ~GktVvViG~G-~IG~~vA~~l~~~Ga--~Viv~d~dp~r~~~  115 (542)
                      ..|+|+|.|.. -||+.+|+.|...|+  +|+.+.+++.++.+
T Consensus         2 ~~KtilITGassGIG~a~a~~la~~G~~~~Vi~~~R~~~~~~~   44 (250)
T d1yo6a1           2 SPGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATE   44 (250)
T ss_dssp             CCSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGCHH
T ss_pred             cCCEEEEeCCCCHHHHHHHHHHHHCCCCCEEEEEeCCHHHHHH
Confidence            35899999985 699999999999997  68888888876554

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=84.17  E-value=0.35  Score=47.68  Aligned_cols=32  Identities=25%  Similarity=0.360  Sum_probs=28.4

Q ss_pred             EEEEEcCChhHHHHHHHHHh------CCCEEEEEeCCc
Q psy4626          79 QVVLCGYGEVGKGCCQSLKG------LGCVIYITEIDP  110 (542)
Q Consensus        79 tVvViG~G~IG~~vA~~l~~------~Ga~Viv~d~dp  110 (542)
                      -|+|||.||-|+.+|..|+.      .|.+|.++|..+
T Consensus        34 DViIVGgGPAGlsaA~~LA~l~~~~~~Gl~VlllEK~~   71 (380)
T d2gmha1          34 DVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAA   71 (380)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSS
T ss_pred             CEEEECCCHHHHHHHHHHHhhhhhhcCCCEEEEEcCCC
Confidence            59999999999999998875      899999999654

>d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=84.06  E-value=0.57  Score=42.31  Aligned_cols=25  Identities=24%  Similarity=0.351  Sum_probs=22.4

Q ss_pred             ccccCcEEEEEcCChhHHHHHHHHH
Q psy4626          73 VMFGGKQVVLCGYGEVGKGCCQSLK   97 (542)
Q Consensus        73 ~~l~GktVvViG~G~IG~~vA~~l~   97 (542)
                      ..+.|++|+|||.|.++..||+.|.
T Consensus        35 ~~~~gk~VvVIGgGNvAlD~AR~ll   59 (216)
T d1lqta1          35 PDLSGARAVVIGNGNVALDVARILL   59 (216)
T ss_dssp             CCCCSSEEEEECCSHHHHHHHHHHH
T ss_pred             ccccCceEEEECCCchhHhhhhhhc
Confidence            4467999999999999999999886

>d1obfo1 c.2.1.3 (O:1-152,O:315-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Achromobacter xylosoxidans [TaxId: 85698]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Achromobacter xylosoxidans [TaxId: 85698]

Probab=84.05  E-value=0.56  Score=41.48  Aligned_cols=29  Identities=24%  Similarity=0.426  Sum_probs=22.8

Q ss_pred             EEEEEcCChhHHHHHHHHHhCC----CEEEEEe
Q psy4626          79 QVVLCGYGEVGKGCCQSLKGLG----CVIYITE  107 (542)
Q Consensus        79 tVvViG~G~IG~~vA~~l~~~G----a~Viv~d  107 (542)
                      +|+|=|+|+||+.+.+.+...+    .+|++..
T Consensus         3 kigINGfGRIGR~v~R~~~~~~~~~~~~vvaIN   35 (173)
T d1obfo1           3 RVAINGYGRIGRNILRAHYEGGKSHDIEIVAIN   35 (173)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTSCSSEEEEEEE
T ss_pred             EEEEECCcHHHHHHHHHHHhCCCCCCeEEEEEc
Confidence            6999999999999999886533    3566554

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=83.87  E-value=0.24  Score=42.22  Aligned_cols=32  Identities=22%  Similarity=0.218  Sum_probs=28.1

Q ss_pred             cccCcEEEEEcCChhHHHHHHHHHhCCCEEEE
Q psy4626          74 MFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYI  105 (542)
Q Consensus        74 ~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv  105 (542)
                      ...|++|+|+|.|.+|..+|..+..+|+++..
T Consensus        26 ~~~gkrVvVIGgG~~g~d~a~~~~r~G~~~~~   57 (162)
T d1ps9a2          26 APVGNKVAIIGCGGIGFDTAMYLSQPGESTSQ   57 (162)
T ss_dssp             CCCCSEEEEECCHHHHHHHHHHHTCCSSCGGG
T ss_pred             cccCCceEEEcCchhHHHHHHHHHHcCCccce
Confidence            45799999999999999999999999986443

>d3cmco1 c.2.1.3 (O:0-148,O:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Bacillus stearothermophilus, nca 1503 [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Bacillus stearothermophilus, nca 1503 [TaxId: 1422]

Probab=83.78  E-value=1.1  Score=39.59  Aligned_cols=29  Identities=14%  Similarity=0.320  Sum_probs=23.7

Q ss_pred             EEEEEcCChhHHHHHHHHHhC-CCEEEEEe
Q psy4626          79 QVVLCGYGEVGKGCCQSLKGL-GCVIYITE  107 (542)
Q Consensus        79 tVvViG~G~IG~~vA~~l~~~-Ga~Viv~d  107 (542)
                      +|+|=|+|+||+.+.+.+... ..+|+++.
T Consensus         3 kIgINGfGRIGR~v~R~~l~~~~~~ivaIN   32 (171)
T d3cmco1           3 KVGINGFGRIGRNVFRAALKNPDIEVVAVN   32 (171)
T ss_dssp             EEEEESCSHHHHHHHHHHTTCTTEEEEEEE
T ss_pred             EEEEECCCHHHHHHHHHHhhCCCcEEEEEc
Confidence            689999999999999888655 45777764

>d1u8fo1 c.2.1.3 (O:3-151,O:316-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Human(Homo sapiens), liver isoform [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Human(Homo sapiens), liver isoform [TaxId: 9606]

Probab=83.74  E-value=0.55  Score=41.43  Aligned_cols=29  Identities=21%  Similarity=0.350  Sum_probs=23.8

Q ss_pred             EEEEEcCChhHHHHHHHHHhCC-CEEEEEe
Q psy4626          79 QVVLCGYGEVGKGCCQSLKGLG-CVIYITE  107 (542)
Q Consensus        79 tVvViG~G~IG~~vA~~l~~~G-a~Viv~d  107 (542)
                      +|+|=|+|+||+.+.+.+.... .+|+++.
T Consensus         3 kIgINGFGRIGR~v~R~~~~~~~~~ivaIN   32 (169)
T d1u8fo1           3 KVGVNGFGRIGRLVTRAAFNSGKVDIVAIN   32 (169)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSSEEEEEE
T ss_pred             EEEEECCcHHHHHHHHHHHHCCCcEEEEec
Confidence            7999999999999999887554 6776663

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=83.52  E-value=0.63  Score=43.74  Aligned_cols=90  Identities=14%  Similarity=0.179  Sum_probs=58.8

Q ss_pred             cccCcEEEEEcCChhHHHHHHHHHhC--CCEEEEEeCCchhhhhhhc----CCce---ee---CHHHHh--cCCcEEEEc
Q psy4626          74 MFGGKQVVLCGYGEVGKGCCQSLKGL--GCVIYITEIDPICALQACM----DGFS---VV---KLNEVI--RTVDIVVTA  139 (542)
Q Consensus        74 ~l~GktVvViG~G~IG~~vA~~l~~~--Ga~Viv~d~dp~r~~~A~~----~G~~---v~---~l~e~l--~~aDvVi~a  139 (542)
                      ..+|++|+=+|+|.=+. .+..++..  +.+|+.+|.+|.....|..    .|..   ..   +..+.+  ..+|.|+..
T Consensus       101 i~pG~~VLDiG~GsG~l-t~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~~~~~~~~~~D~V~~d  179 (266)
T d1o54a_         101 VKEGDRIIDTGVGSGAM-CAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFDEKDVDALFLD  179 (266)
T ss_dssp             CCTTCEEEEECCTTSHH-HHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCSCCSEEEEEEC
T ss_pred             CCCCCEEEECCCCCCHH-HHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEeccccccccccceeeeEec
Confidence            45899999999998443 33445554  4799999999987655532    2321   11   122222  467888876


Q ss_pred             CCCcccCCHHHHhccCCCeEEEecc
Q psy4626         140 TGNKNVVTREHMDKMKNGCVVCNMG  164 (542)
Q Consensus       140 tG~~~lI~~e~l~~mk~GailvnvG  164 (542)
                      ...+.-+=.+..+.||||+.++...
T Consensus       180 ~p~p~~~l~~~~~~LKpGG~lv~~~  204 (266)
T d1o54a_         180 VPDPWNYIDKCWEALKGGGRFATVC  204 (266)
T ss_dssp             CSCGGGTHHHHHHHEEEEEEEEEEE
T ss_pred             CCCHHHHHHHHHhhcCCCCEEEEEe
Confidence            6655333257888999999998644

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=83.47  E-value=0.57  Score=43.66  Aligned_cols=33  Identities=15%  Similarity=0.126  Sum_probs=30.3

Q ss_pred             cEEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCc
Q psy4626          78 KQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDP  110 (542)
Q Consensus        78 ktVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp  110 (542)
                      |+|+|.|. |-||+.++..|...|.+|+++++.+
T Consensus         1 k~vLItG~tGfiG~~l~~~Ll~~g~~V~~~~r~~   34 (321)
T d1rpna_           1 RSALVTGITGQDGAYLAKLLLEKGYRVHGLVARR   34 (321)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCC
Confidence            68999998 8999999999999999999998765

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=83.36  E-value=0.077  Score=47.42  Aligned_cols=26  Identities=19%  Similarity=0.281  Sum_probs=23.1

Q ss_pred             EEEEEcCChhHHHHHHHHHhCCCEEE
Q psy4626          79 QVVLCGYGEVGKGCCQSLKGLGCVIY  104 (542)
Q Consensus        79 tVvViG~G~IG~~vA~~l~~~Ga~Vi  104 (542)
                      +|+|||+|.+|..+|..|...|.+|+
T Consensus         2 kV~VIGaGi~GlstA~~L~~~G~~v~   27 (246)
T d1kifa1           2 RVVVIGAGVIGLSTALCIHERYHSVL   27 (246)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHTTTS
T ss_pred             EEEEECchHHHHHHHHHHHHCCCCce
Confidence            69999999999999999999886543

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=83.32  E-value=0.44  Score=45.01  Aligned_cols=30  Identities=30%  Similarity=0.543  Sum_probs=28.3

Q ss_pred             EEEEEcCChhHHHHHHHHHhCCCEEEEEeC
Q psy4626          79 QVVLCGYGEVGKGCCQSLKGLGCVIYITEI  108 (542)
Q Consensus        79 tVvViG~G~IG~~vA~~l~~~Ga~Viv~d~  108 (542)
                      -|+|||.|+-|..+|.+|...|.+|+|.|.
T Consensus         6 DviIVGsG~aG~v~A~~La~~G~kVlvLEa   35 (379)
T d2f5va1           6 DVVIVGSGPIGCTYARELVGAGYKVAMFDI   35 (379)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECS
T ss_pred             cEEEECcCHHHHHHHHHHhhCCCeEEEEec
Confidence            489999999999999999999999999984

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=83.02  E-value=0.52  Score=42.04  Aligned_cols=86  Identities=15%  Similarity=0.074  Sum_probs=55.2

Q ss_pred             ccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce---eeCHHHH-h--cCCcEEEEcCCCc-ccCC
Q psy4626          75 FGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS---VVKLNEV-I--RTVDIVVTATGNK-NVVT  147 (542)
Q Consensus        75 l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~---v~~l~e~-l--~~aDvVi~atG~~-~lI~  147 (542)
                      ..+++|+=+|+| -|..+- .+...|++|+.+|.++.....|...+..   ..+.+++ +  ...|+|+.....- ++-+
T Consensus        41 ~~~~~vLDiGcG-~G~~~~-~l~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~l~~~~~~fD~ii~~~~~~~~~~d  118 (246)
T d2avna1          41 KNPCRVLDLGGG-TGKWSL-FLQERGFEVVLVDPSKEMLEVAREKGVKNVVEAKAEDLPFPSGAFEAVLALGDVLSYVEN  118 (246)
T ss_dssp             CSCCEEEEETCT-TCHHHH-HHHTTTCEEEEEESCHHHHHHHHHHTCSCEEECCTTSCCSCTTCEEEEEECSSHHHHCSC
T ss_pred             CCCCEEEEECCC-Cchhcc-cccccceEEEEeecccccccccccccccccccccccccccccccccceeeecchhhhhhh
Confidence            368899999999 466554 4456799999999999877666554432   1122222 2  4578887643221 2222


Q ss_pred             -----HHHHhccCCCeEEEe
Q psy4626         148 -----REHMDKMKNGCVVCN  162 (542)
Q Consensus       148 -----~e~l~~mk~Gailvn  162 (542)
                           ++..+.||+||+++-
T Consensus       119 ~~~~l~~i~r~Lk~gG~~ii  138 (246)
T d2avna1         119 KDKAFSEIRRVLVPDGLLIA  138 (246)
T ss_dssp             HHHHHHHHHHHEEEEEEEEE
T ss_pred             HHHHHHHHHhhcCcCcEEEE
Confidence                 345668899998774

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

Probab=82.97  E-value=0.96  Score=43.33  Aligned_cols=33  Identities=18%  Similarity=0.148  Sum_probs=28.8

Q ss_pred             cEEEEEc-CChhHHHHHHHHHhCCCEEEEEeCCc
Q psy4626          78 KQVVLCG-YGEVGKGCCQSLKGLGCVIYITEIDP  110 (542)
Q Consensus        78 ktVvViG-~G~IG~~vA~~l~~~Ga~Viv~d~dp  110 (542)
                      |.|+|.| .|-||+.++..|...|.+|+++|+.+
T Consensus         2 K~vLITGatGfiGs~lv~~Ll~~g~~V~~~~r~~   35 (357)
T d1db3a_           2 KVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRA   35 (357)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEECC--
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCcCEEEEEECCC
Confidence            6788999 59999999999999999999999744

>d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Galactose/lactose metabolism regulatory protein GAL80
species: Yeast (Kluyveromyces lactis) [TaxId: 28985]

Probab=82.80  E-value=1.1  Score=40.86  Aligned_cols=64  Identities=16%  Similarity=0.143  Sum_probs=42.9

Q ss_pred             cEEEEEcCChh----HHHHHHHHHhC--CCEEE-EEeCCchhhhh-hhcCCce----eeCHHHHh--cCCcEEEEcCC
Q psy4626          78 KQVVLCGYGEV----GKGCCQSLKGL--GCVIY-ITEIDPICALQ-ACMDGFS----VVKLNEVI--RTVDIVVTATG  141 (542)
Q Consensus        78 ktVvViG~G~I----G~~vA~~l~~~--Ga~Vi-v~d~dp~r~~~-A~~~G~~----v~~l~e~l--~~aDvVi~atG  141 (542)
                      -+|+|||+|.+    ++.-+..++..  +.+++ ++|+++.++.. +...+..    +.+.++++  ...|+|+.||-
T Consensus        17 irvgiIG~G~~~~~~~~~h~~ai~~~~~~~~ivav~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~iD~V~i~tp   94 (237)
T d2nvwa1          17 IRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQLQLKHATGFDSLESFAQYKDIDMIVVSVK   94 (237)
T ss_dssp             EEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHHHTTCTTCEEESCHHHHHHCTTCSEEEECSC
T ss_pred             eEEEEEecCccccHHHHHHHHHHHhcCCCeEEEEEEcCCHHHHHHHHHhcccccceeecchhhcccccccceeeccCC
Confidence            48999999874    44444556554  56766 68998877654 3333332    45778877  46889998864

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=82.75  E-value=0.89  Score=43.09  Aligned_cols=87  Identities=10%  Similarity=0.034  Sum_probs=54.1

Q ss_pred             cccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhh----hcCCc----e--eeCHHHHhcCCcEEEEc----
Q psy4626          74 MFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQA----CMDGF----S--VVKLNEVIRTVDIVVTA----  139 (542)
Q Consensus        74 ~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A----~~~G~----~--v~~l~e~l~~aDvVi~a----  139 (542)
                      .-+|.+|+=+|+|+=|..+ ..++..|++|+.+++++.....|    ...|.    .  ..+..+.=...|.|+..    
T Consensus        60 l~~G~~VLDiGCG~G~~a~-~~a~~~g~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~fD~i~si~~~e  138 (285)
T d1kpga_          60 LQPGMTLLDVGCGWGATMM-RAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFDEPVDRIVSIGAFE  138 (285)
T ss_dssp             CCTTCEEEEETCTTSHHHH-HHHHHHCCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCCCCCSEEEEESCGG
T ss_pred             CCCCCEEEEecCcchHHHH-HHHhcCCcceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhcccccccceeeehhhh
Confidence            4589999999999976554 45667799999999999754433    22221    1  11222222457777662    


Q ss_pred             -CCCc---ccCCHHHHhccCCCeEEEe
Q psy4626         140 -TGNK---NVVTREHMDKMKNGCVVCN  162 (542)
Q Consensus       140 -tG~~---~lI~~e~l~~mk~Gailvn  162 (542)
                       .|.+   ..+ ++.-+.||||+.++.
T Consensus       139 h~~~~~~~~~~-~~~~r~LkpgG~~~l  164 (285)
T d1kpga_         139 HFGHERYDAFF-SLAHRLLPADGVMLL  164 (285)
T ss_dssp             GTCTTTHHHHH-HHHHHHSCTTCEEEE
T ss_pred             hcCchhHHHHH-HHHHhhcCCCCcEEE
Confidence             2222   122 345567899998763

>d1ekxa2 c.78.1.1 (A:151-310) Aspartate carbamoyltransferase catalytic subunit {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Escherichia coli [TaxId: 562]

Probab=82.74  E-value=2.4  Score=36.17  Aligned_cols=90  Identities=18%  Similarity=0.194  Sum_probs=56.2

Q ss_pred             ccCcEEEEEcC---ChhHHHHHHHHHhCCC-EEEEEeCCch-----hhhhhhcCCce---eeCHHHHhcCCcEEEEcCCC
Q psy4626          75 FGGKQVVLCGY---GEVGKGCCQSLKGLGC-VIYITEIDPI-----CALQACMDGFS---VVKLNEVIRTVDIVVTATGN  142 (542)
Q Consensus        75 l~GktVvViG~---G~IG~~vA~~l~~~Ga-~Viv~d~dp~-----r~~~A~~~G~~---v~~l~e~l~~aDvVi~atG~  142 (542)
                      +.|.+|+++|=   +++....+..+..+|. .++++-....     ....+...|..   ..+++++++++|+|.+....
T Consensus         2 l~gl~i~~vGD~~nsrv~~Sli~~l~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~d~~~a~~~aDvvy~~~~~   81 (160)
T d1ekxa2           2 LDNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQYILDMLDEKGIAWSLHSSIEEVMAEVDILYMTRVQ   81 (160)
T ss_dssp             SSSCEEEEESCTTTCHHHHHHHHHHTTSSSCEEEEECCGGGCCCHHHHHHHHHTTCCEEECSCSTTTGGGCSEEEECCCC
T ss_pred             CCCCEEEEEcCCCccHHHHHHHHHHHHcCCCeEEeeccchhhhhHHHHHHHhhhccccccccCHHHHhCcCceEEeeccc
Confidence            46899999997   5588888988989975 5666642211     11223334433   24678899999999986421


Q ss_pred             --------------cccCCHHHHhccCCCeEEEecc
Q psy4626         143 --------------KNVVTREHMDKMKNGCVVCNMG  164 (542)
Q Consensus       143 --------------~~lI~~e~l~~mk~GailvnvG  164 (542)
                                    ...++.+.+..+++.+++.-+.
T Consensus        82 ~e~~~~~~~~~~~~~~~~~~~~~~~a~~~~i~mHcL  117 (160)
T d1ekxa2          82 KERLDPSEYANVKAQFVLRASDLHNAKANMKVLHPL  117 (160)
T ss_dssp             GGGCCGGGGGGCSCSCCBCGGGGTTCCTTCEEECCS
T ss_pred             ccccchHHHHHHHHHhhccHHHHHhcCcceeeecCC
Confidence                          1222345555666666665544

>d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=82.16  E-value=0.57  Score=42.67  Aligned_cols=35  Identities=17%  Similarity=0.207  Sum_probs=30.6

Q ss_pred             EEEEEcCCh-hHHHHHHHHHhCCCEEEEEeCCchhh
Q psy4626          79 QVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICA  113 (542)
Q Consensus        79 tVvViG~G~-IG~~vA~~l~~~Ga~Viv~d~dp~r~  113 (542)
                      +++|.|.+. ||+.+|+.|...|++|++++++..+.
T Consensus         3 vAlVTGas~GIG~aia~~la~~G~~Vvi~~r~~~~~   38 (266)
T d1mxha_           3 AAVITGGARRIGHSIAVRLHQQGFRVVVHYRHSEGA   38 (266)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHH
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCchHH
Confidence            578889865 99999999999999999999886554

>d1dlja3 c.26.3.1 (A:295-402) UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain
species: Streptococcus pyogenes [TaxId: 1314]

Probab=81.89  E-value=2.1  Score=34.30  Aligned_cols=66  Identities=21%  Similarity=0.108  Sum_probs=45.6

Q ss_pred             ccCcEEEEEcCC----------hhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCcee-eCHHHHhcCCcEEEEcCCC
Q psy4626          75 FGGKQVVLCGYG----------EVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV-VKLNEVIRTVDIVVTATGN  142 (542)
Q Consensus        75 l~GktVvViG~G----------~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v-~~l~e~l~~aDvVi~atG~  142 (542)
                      ...++|+|+|.=          .-...++..|+..|++|.++|  |.-...-...+..+ .++++++..+|+||..+..
T Consensus        13 ~~~k~I~ilGl~fK~n~dD~R~Sp~i~ii~~L~~~g~~v~iyD--P~v~~~~~~~~~~~~~~l~~~~~~sDiII~~~~~   89 (108)
T d1dlja3          13 SPVKVVGVYRLIMKSNSDNFRESAIKDVIDILKSKDIKIIIYE--PMLNKLESEDQSVLVNDLENFKKQANIIVTNRYD   89 (108)
T ss_dssp             CSSCEEEEECCCSSTTCSCCTTCHHHHHHHHHHTSSCEEEEEC--TTCSCCCTTCCSEECCCHHHHHHHCSEEECSSCC
T ss_pred             CCCCEEEEEEEEECCCCcchhhhhHHHHHHHHhccccceeeec--CCcChhHhccCCEEEeCHHHHHhhCCEEEEcCCc
Confidence            455799999972          233778999999999999997  54322112234443 4788889999988865443

>d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 5,10-methenyltetrahydromethanopterin hydrogenase, HMD
species: Archaeon Methanocaldococcus jannaschii [TaxId: 2190]

Probab=81.59  E-value=0.083  Score=49.70  Aligned_cols=87  Identities=17%  Similarity=0.269  Sum_probs=57.3

Q ss_pred             EEEEcCCh--hHHHHHH------HHHhCCCEEEEEeCCchhhhhhhcCC-------------------------------
Q psy4626          80 VVLCGYGE--VGKGCCQ------SLKGLGCVIYITEIDPICALQACMDG-------------------------------  120 (542)
Q Consensus        80 VvViG~G~--IG~~vA~------~l~~~Ga~Viv~d~dp~r~~~A~~~G-------------------------------  120 (542)
                      +.|+|.|-  .|.++++      ++...|-.|+..|.|+.+..++...|                               
T Consensus        43 ~~~~gagl~~~~~gi~~v~vs~~~fa~~g~~v~~~d~d~~~v~~~~~~g~~~i~~p~l~~~v~~~~~~~~~~~~~~~~~~  122 (242)
T d2b0ja2          43 SITYGAELLHLVPDVKEVIVSDPCFAEEPGLVVIDEFDPKEVMEAHLSGNPESIMPKIREVVKAKAKELPKPPKACIHLV  122 (242)
T ss_dssp             HHHHHHHHHHHCTTCCEEEEECGGGGSSSEEEECCCSCHHHHHHHHHTTCGGGTHHHHHHHHHHHHHTSCCTTTEEEESS
T ss_pred             eeeeeecHHhhhhchhhhhccchhhhhcCCeEEEEeCCHHHHHHHHhcCCchhhcchHHHHHHHHHHhccCCccchhhcC
Confidence            44555553  5555555      46778889999999976532222222                               


Q ss_pred             ------ce-eeCHHHHhcCCcEEEEcCCCc----ccCCHHHHhccCCCeEEEeccCCC
Q psy4626         121 ------FS-VVKLNEVIRTVDIVVTATGNK----NVVTREHMDKMKNGCVVCNMGHSN  167 (542)
Q Consensus       121 ------~~-v~~l~e~l~~aDvVi~atG~~----~lI~~e~l~~mk~GailvnvG~g~  167 (542)
                            .. +.+..++++++|+||++....    .++ .+..+.+++|+++++++...
T Consensus       123 ~pEe~Gv~v~~d~~Eav~~ADiII~~vP~~~~v~~Vi-~~I~~~l~~g~Iiid~STi~  179 (242)
T d2b0ja2         123 HPEDVGLKVTSDDREAVEGADIVITWLPKGNKQPDII-KKFADAIPEGAIVTHACTIP  179 (242)
T ss_dssp             CGGGGTCEEESCHHHHHTTCSEEEECCTTCTTHHHHH-HHHGGGSCTTCEEEECSSSC
T ss_pred             CHHHCCCEEECCHHHHHhcCCeEEEeeecHHHHHHHH-HHHHhhCCCCcEEEecCCCc
Confidence                  11 123457789999999987432    344 35677899999999988764

>d1k3ta1 c.2.1.3 (A:1-164,A:334-359) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=81.38  E-value=0.95  Score=40.51  Aligned_cols=22  Identities=32%  Similarity=0.549  Sum_probs=19.0

Q ss_pred             EEEEEcCChhHHHHHHHHHhCC
Q psy4626          79 QVVLCGYGEVGKGCCQSLKGLG  100 (542)
Q Consensus        79 tVvViG~G~IG~~vA~~l~~~G  100 (542)
                      +|+|=|+|+||+.+.+.+-..+
T Consensus         4 kigINGFGRIGR~vlR~~~~~~   25 (190)
T d1k3ta1           4 KVGINGFGRIGRMVFQALCEDG   25 (190)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTT
T ss_pred             EEEEECCChHHHHHHHHHHHcC
Confidence            7999999999999999876543

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=81.05  E-value=0.45  Score=38.14  Aligned_cols=37  Identities=14%  Similarity=0.165  Sum_probs=31.0

Q ss_pred             ccccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCC
Q psy4626          73 VMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEID  109 (542)
Q Consensus        73 ~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~d  109 (542)
                      ....||+|+|+|.|.-|..+|..+...+.+|+...+.
T Consensus        28 ~~f~gK~VlVVG~g~Sa~dia~~l~~~ak~v~~~~~r   64 (107)
T d2gv8a2          28 ELFVGESVLVVGGASSANDLVRHLTPVAKHPIYQSLL   64 (107)
T ss_dssp             GGGTTCCEEEECSSHHHHHHHHHHTTTSCSSEEEECT
T ss_pred             hhcCCCeEEEECCCCCHHHHHHHHHHhcCEEEEEEec
Confidence            4578999999999999999999998888776665443

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=81.01  E-value=0.44  Score=45.02  Aligned_cols=36  Identities=17%  Similarity=0.210  Sum_probs=30.6

Q ss_pred             cCcEEEEEcCChhHHHHHHHHHh--CCCEEEEEeCCch
Q psy4626          76 GGKQVVLCGYGEVGKGCCQSLKG--LGCVIYITEIDPI  111 (542)
Q Consensus        76 ~GktVvViG~G~IG~~vA~~l~~--~Ga~Viv~d~dp~  111 (542)
                      ....|+|||.||.|..+|..|+.  .|.+|+++|.++.
T Consensus        49 ~~~~~~~~g~g~~g~~~a~~~~~~~~~~~~~~~~~~~~   86 (311)
T d2gjca1          49 AVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVA   86 (311)
T ss_dssp             TEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSS
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEEcCCC
Confidence            35569999999999999999974  5999999997653

>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Polymyxin resistance protein ArnA (PrmI)
species: Escherichia coli [TaxId: 562]

Probab=80.70  E-value=2.1  Score=40.09  Aligned_cols=64  Identities=17%  Similarity=0.222  Sum_probs=43.2

Q ss_pred             EEEEEcC-ChhHHHHHHHHHhCC-CEEEEEeCCchhhhhh-hcCCceee--CH------H-HHhcCCcEEEEcCCC
Q psy4626          79 QVVLCGY-GEVGKGCCQSLKGLG-CVIYITEIDPICALQA-CMDGFSVV--KL------N-EVIRTVDIVVTATGN  142 (542)
Q Consensus        79 tVvViG~-G~IG~~vA~~l~~~G-a~Viv~d~dp~r~~~A-~~~G~~v~--~l------~-e~l~~aDvVi~atG~  142 (542)
                      +|+|+|. |-||+.+++.|...| .+|++.|+...+.... ....++.+  ++      . .+.+++|+|+-+.+.
T Consensus         2 KILITG~tGfiG~~l~~~Ll~~g~~~V~~ld~~~~~~~~~~~~~~~~~i~~Di~~~~~~~~~~~~~~d~Vih~a~~   77 (342)
T d2blla1           2 RVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHPHFHFVEGDISIHSEWIEYHVKKCDVVLPLVAI   77 (342)
T ss_dssp             EEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCCGGGGGGTTCTTEEEEECCTTTCSHHHHHHHHHCSEEEECBCC
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCCcchhhhccCCCeEEEECccCChHHHHHHHHhCCCcccccccc
Confidence            6899998 899999999999998 5999998754432211 12233322  11      2 245789999987653

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=80.22  E-value=0.76  Score=44.37  Aligned_cols=31  Identities=23%  Similarity=0.328  Sum_probs=28.8

Q ss_pred             CcEEEEEcC-ChhHHHHHHHHHhCCCEEEEEe
Q psy4626          77 GKQVVLCGY-GEVGKGCCQSLKGLGCVIYITE  107 (542)
Q Consensus        77 GktVvViG~-G~IG~~vA~~l~~~Ga~Viv~d  107 (542)
                      |++|+|.|. |-||..+++.|...|.+|+++|
T Consensus         1 g~kILVTGatGfiG~~lv~~Ll~~g~~V~~iD   32 (393)
T d1i24a_           1 GSRVMVIGGDGYCGWATALHLSKKNYEVCIVD   32 (393)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCcCEEEEEe
Confidence            789999998 8899999999999999999998

>d2b4ro1 c.2.1.3 (O:4-152,O:319-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=80.20  E-value=1  Score=39.46  Aligned_cols=29  Identities=14%  Similarity=0.323  Sum_probs=24.1

Q ss_pred             EEEEEcCChhHHHHHHHHHhC-CCEEEEEe
Q psy4626          79 QVVLCGYGEVGKGCCQSLKGL-GCVIYITE  107 (542)
Q Consensus        79 tVvViG~G~IG~~vA~~l~~~-Ga~Viv~d  107 (542)
                      +|+|=|+|+||+.+.+.+... ..+|++..
T Consensus         2 kigINGfGRIGR~v~R~~~~~~~~~iv~IN   31 (166)
T d2b4ro1           2 KLGINGFGRIGRLVFRAAFGRKDIEVVAIN   31 (166)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCSSEEEEEEE
T ss_pred             eEEEECCCHHHHHHHHHHhhCCCcEEEEEC
Confidence            689999999999999998765 45777664