Psyllid ID: psy4650

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-
Protein Sequence
KSRLISQAKNTIIKNKRALNTELTETDIETIVRETKVDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKVGREEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSVHVTIKYRLDISDSHRSVAKLRAAAETCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIGGLLTSFVQPCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIGGLLTSFVQPIEDVLSRSNITHDQINKFTT
Secondary Structure (PSIPRED)
cccEEEcccccEEEEEEccccEEEEEEEccccEEEEEEEEcccccEEEEEEEEccccEEEEcccccccEEEEEEEEccccEEEEEEEEcccccEEEEcccccEEEEEccccccHHHHcccccccEEEEEEcccccEEEEEcccccEEEEEcccHHHHHHcccccccEEEEEEcccccEEEEEEcccEEEEEccccEEEEEEEccccEEEEEcccccEEEEcccccccEEEccccEEEEEEEEcccEEEEEEEcccccEEEEEEccccccEEEEEcccccEEEEEEEEcccEEEEEcHHHHHHHHHHHccccccccHHHHccccccccEEEEEEEEEEEEccEEcHHHHHHHHHHcccccccHHHHHccccccEEEEccccc
Secondary Structure Prediction (SSPRO)
ccEEEEcccccEEEEEEcccccEEEEEEccccEEEEEEEcccccEcccccEEEEEccccEEEEEEccccEEEEEEcccccEEEEEEcccccccEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEcccccEEEEEcccccEEEEEEcccccEEEEEEcccccEEEccccccEEEEEccEEEEEEcccccHHcccccccHHHHHHHHHHHHHHHHHcccccEEEEEEEEEEccEEEEEEEEHHHHHHHcHHHHHccHHHHHHHHcccccccEEEEEccccEEEcccccccHcccccccEEEEEEcccccEEccccccHHHHHcccc
Coil and Loop (DISEMBL)
KSRLISQAKNTIIKNKRALNTELTETDIETIVRETkvdittnkDMIEYKISYQessrvkafnpIQVATLILKTLyghekgvncvdyyhggdkpylisgaddRLVKIWDYQNKTCVQTLeghgqnisavcfhpelpivitgsedgsvrvwhsgthRLEISLTYGLERVWTisslkgsnnvaigydEGSVLLKvgreepavsmdvngCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSVHVTIKYRLDISDSHRSVAKLRAAAETCMHVLSTLQSSNVFVESlydgldfhhnvSRARFESLIGGLLTSFVQPCMHVLSTLQSSNVFVESlydgldfhhnvSRARFESLIGGLltsfvqpiedvlsrsnithdqinkftt
Flexible Loop (DISEMBL)
ksrlisqakntiiknkralnteltetdietivretkvdittnkdMIEYKISyqessrvkafnPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISslkgsnnvaiGYDEGSVLLKVGREEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSVHVTIKYRLDISDSHRSVAKLRAAAETCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIGGLLTSFVQPCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIGGLLTSFVQPIEDvlsrsnithdqinkftt
Low Complexity Region (SEG)
KSRLISQAKNTIIKNKRALNTELTETDIETIVRETKVDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKVGREEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSVHVTIKYRLDISDSHRSVAKLRAAAETCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIGGLLTSFVQPCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIGGLLTSFVQPIEDVLSRSNITHDQINKFTT
Disordered region (IsUnstruct)
***********IIKNKRALNTELTETDIETIVRETKVDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKVGREEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSVHVTIKYRLDISDSHRSVAKLRAAAETCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIGGLLTSFVQPCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIGGLLTSFVQPIEDVLSR*************
Disordered Region (DISOPRED)
KSRLISQAKNTIIKNKRALNTELTETDIETIVRETKVDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKVGREEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSVHVTIKYRLDISDSHRSVAKLRAAAETCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIGGLLTSFVQPCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIGGLLTSFVQPIEDVLSRSNITHDQINK***
Disordered Region (DISEMBL)
KSRLISQAKNTIIKNKRALNTELTETDIETIVRETKVDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKVGREEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSVHVTIKYRLDISDSHRSVAKLRAAAETCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIGGLLTSFVQPCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIGGLLTSFVQPIEDVLSRSNITHDQINKFTT
Disordered Region (DISPRO)
*SRLISQAKNTIIKNKRALNTELTETDIETIVRETKVDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKVGREEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSVHVTIKYRLDISDSHRSVAKLRAAAETCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIGGLLTSFVQPCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIGGLLTSFVQPIEDVLSRSNITHDQINKFTT
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
KSRLISQAKNTIIKNKRALNTELTETDIETIVRETKVDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKVGREEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSVHVTIKYRLDISDSHRSVAKLRAAAETCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIGGLLTSFVQPCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIGGLLTSFVQPIEDVLSRSNITHDQINKFTT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	381	2.2.26 [Sep-21-2011]
O62621	914	Coatomer subunit beta' OS	yes	N/A	0.398	0.166	0.831	3e-78
P35605	906	Coatomer subunit beta' OS	yes	N/A	0.435	0.183	0.745	5e-74
O55029	905	Coatomer subunit beta' OS	yes	N/A	0.435	0.183	0.745	5e-74
Q5R664	906	Coatomer subunit beta' OS	yes	N/A	0.435	0.183	0.745	6e-74
P35606	906	Coatomer subunit beta' OS	yes	N/A	0.435	0.183	0.745	6e-74
O35142	905	Coatomer subunit beta' OS	yes	N/A	0.435	0.183	0.739	3e-73
Q4R4I8	906	Coatomer subunit beta' OS	N/A	N/A	0.435	0.183	0.739	2e-72
Q20168	1000	Probable coatomer subunit	yes	N/A	0.440	0.168	0.735	2e-72
Q5VQ78	907	Coatomer subunit beta'-1	yes	N/A	0.438	0.184	0.644	7e-64
Q9C827	926	Coatomer subunit beta'-2	yes	N/A	0.438	0.180	0.639	5e-62

>sp|O62621|COPB2_DROME Coatomer subunit beta' OS=Drosophila melanogaster GN=beta'Cop PE=2 SV=2

 Score =  292 bits (748), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 128/154 (83%), Positives = 144/154 (93%)

Query: 73  TLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHP 132
           TL GHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGH QNISAVCFHP
Sbjct: 180 TLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHAQNISAVCFHP 239

Query: 133 ELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKV 192
           ELPIV+TGSEDG+VR+WHSGT+RLE  L YG ERVWTISS++G+NNVA+GYDEGS+++KV
Sbjct: 240 ELPIVLTGSEDGTVRIWHSGTYRLETCLNYGFERVWTISSMRGTNNVALGYDEGSIIIKV 299

Query: 193 GREEPAVSMDVNGCKIIWARHSEVQQANLKTMPE 226
           GREEPA+SMDV G KIIWA+HSE+QQ NLKT+ +
Sbjct: 300 GREEPAMSMDVVGSKIIWAKHSEMQQVNLKTIAD 333

The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.
Drosophila melanogaster (taxid: 7227)

>sp|P35605|COPB2_BOVIN Coatomer subunit beta' OS=Bos taurus GN=COPB2 PE=1 SV=3

 Score =  278 bits (711), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 126/169 (74%), Positives = 146/169 (86%), Gaps = 3/169 (1%)

Query: 73  TLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHP 132
           TL GHEKGVNC+DYY GGDKPYLISGADDRLVKIWDYQNKTCVQTLEGH QN+S   FHP
Sbjct: 180 TLEGHEKGVNCIDYYSGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHAQNVSCASFHP 239

Query: 133 ELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKV 192
           ELPI+ITGSEDG+VR+WHS T+RLE +L YG+ERVW ++SL+GSNNVA+GYDEGS+++K+
Sbjct: 240 ELPIIITGSEDGTVRIWHSSTYRLESTLNYGMERVWCVASLRGSNNVALGYDEGSIIVKL 299

Query: 193 GREEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSV 241
           GREEPA+SMD NG KIIWA+HSEVQQANLK M +    I  G  L L+V
Sbjct: 300 GREEPAMSMDANG-KIIWAKHSEVQQANLKAMGDA--EIKDGERLPLAV 345

This coatomer complex protein, essential for Golgi budding and vesicular trafficking, is a selective binding protein (RACK) for protein kinase C, epsilon type. It binds to Golgi membranes in a GTP-dependent manner.

Bos taurus (taxid: 9913)

>sp|O55029|COPB2_MOUSE Coatomer subunit beta' OS=Mus musculus GN=Copb2 PE=2 SV=2

 Score =  278 bits (711), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 126/169 (74%), Positives = 146/169 (86%), Gaps = 3/169 (1%)

Query: 73  TLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHP 132
           TL GHEKGVNC+DYY GGDKPYLISGADDRLVKIWDYQNKTCVQTLEGH QN+S   FHP
Sbjct: 180 TLEGHEKGVNCIDYYSGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHAQNVSCASFHP 239

Query: 133 ELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKV 192
           ELPI+ITGSEDG+VR+WHS T+RLE +L YG+ERVW ++SL+GSNNVA+GYDEGS+++K+
Sbjct: 240 ELPIIITGSEDGTVRIWHSSTYRLESTLNYGMERVWCVASLRGSNNVALGYDEGSIIVKL 299

Query: 193 GREEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSV 241
           GREEPA+SMD NG KIIWA+HSEVQQANLK M +    I  G  L L+V
Sbjct: 300 GREEPAMSMDANG-KIIWAKHSEVQQANLKAMGDT--EIKDGERLPLAV 345

This coatomer complex protein, essential for Golgi budding and vesicular trafficking, is a selective binding protein (RACK) for protein kinase C, epsilon type. It binds to Golgi membranes in a GTP-dependent manner.

Mus musculus (taxid: 10090)

>sp|Q5R664|COPB2_PONAB Coatomer subunit beta' OS=Pongo abelii GN=COPB2 PE=2 SV=1

 Score =  278 bits (710), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 126/169 (74%), Positives = 146/169 (86%), Gaps = 3/169 (1%)

Query: 73  TLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHP 132
           TL GHEKGVNC+DYY GGDKPYLISGADDRLVKIWDYQNKTCVQTLEGH QN+S   FHP
Sbjct: 180 TLEGHEKGVNCIDYYSGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHAQNVSCASFHP 239

Query: 133 ELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKV 192
           ELPI+ITGSEDG+VR+WHS T+RLE +L YG+ERVW ++SL+GSNNVA+GYDEGS+++K+
Sbjct: 240 ELPIIITGSEDGTVRIWHSSTYRLESTLNYGMERVWCVASLRGSNNVALGYDEGSIIVKL 299

Query: 193 GREEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSV 241
           GREEPA+SMD NG KIIWA+HSEVQQANLK M +    I  G  L L+V
Sbjct: 300 GREEPAMSMDANG-KIIWAKHSEVQQANLKAMGDA--EIKDGERLPLAV 345

This coatomer complex protein, essential for Golgi budding and vesicular trafficking, is a selective binding protein (RACK) for protein kinase C, epsilon type. It binds to Golgi membranes in a GTP-dependent manner.

Pongo abelii (taxid: 9601)

>sp|P35606|COPB2_HUMAN Coatomer subunit beta' OS=Homo sapiens GN=COPB2 PE=1 SV=2

 Score =  278 bits (710), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 126/169 (74%), Positives = 146/169 (86%), Gaps = 3/169 (1%)

Query: 73  TLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHP 132
           TL GHEKGVNC+DYY GGDKPYLISGADDRLVKIWDYQNKTCVQTLEGH QN+S   FHP
Sbjct: 180 TLEGHEKGVNCIDYYSGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHAQNVSCASFHP 239

Query: 133 ELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKV 192
           ELPI+ITGSEDG+VR+WHS T+RLE +L YG+ERVW ++SL+GSNNVA+GYDEGS+++K+
Sbjct: 240 ELPIIITGSEDGTVRIWHSSTYRLESTLNYGMERVWCVASLRGSNNVALGYDEGSIIVKL 299

Query: 193 GREEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSV 241
           GREEPA+SMD NG KIIWA+HSEVQQANLK M +    I  G  L L+V
Sbjct: 300 GREEPAMSMDANG-KIIWAKHSEVQQANLKAMGDA--EIKDGERLPLAV 345

This coatomer complex protein, essential for Golgi budding and vesicular trafficking, is a selective binding protein (RACK) for protein kinase C, epsilon type. It binds to Golgi membranes in a GTP-dependent manner.

Homo sapiens (taxid: 9606)

>sp|O35142|COPB2_RAT Coatomer subunit beta' OS=Rattus norvegicus GN=Copb2 PE=1 SV=3

 Score =  275 bits (704), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 125/169 (73%), Positives = 145/169 (85%), Gaps = 3/169 (1%)

Query: 73  TLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHP 132
           TL GHEKGVNC+DYY GGDKPYLISGADDRLVKIWDYQNKTCVQT EGH QN+S   FHP
Sbjct: 180 TLEGHEKGVNCIDYYSGGDKPYLISGADDRLVKIWDYQNKTCVQTPEGHAQNVSCATFHP 239

Query: 133 ELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKV 192
           ELPI+ITGSEDG+VR+WHS T+RLE +L YG+ERVW ++SL+GSNNVA+GYDEGS+++K+
Sbjct: 240 ELPIIITGSEDGTVRIWHSSTYRLESTLNYGMERVWCVASLRGSNNVALGYDEGSIIVKL 299

Query: 193 GREEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSV 241
           GREEPA+SMD NG KIIWA+HSEVQQANLK M +    I  G  L L+V
Sbjct: 300 GREEPAMSMDANG-KIIWAKHSEVQQANLKAMGDT--EIKDGERLPLAV 345

This coatomer complex protein, essential for Golgi budding and vesicular trafficking, is a selective binding protein (RACK) for protein kinase C, epsilon type. It binds to Golgi membranes in a GTP-dependent manner.

Rattus norvegicus (taxid: 10116)

>sp|Q4R4I8|COPB2_MACFA Coatomer subunit beta' OS=Macaca fascicularis GN=COPB2 PE=2 SV=1

 Score =  273 bits (698), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 125/169 (73%), Positives = 144/169 (85%), Gaps = 3/169 (1%)

Query: 73  TLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHP 132
           TL GHEKGVNC+DYY GGDKPYLISGADDRLVKIWDYQNKTCVQTLEGH QN+S   FHP
Sbjct: 180 TLEGHEKGVNCIDYYSGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHAQNVSCASFHP 239

Query: 133 ELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKV 192
           ELPI+ITGSEDG+VR+WHS T+RLE +L YG+ERVW ++SL+GSNNVA+G DEGS+++K+
Sbjct: 240 ELPIIITGSEDGTVRIWHSSTYRLESTLNYGMERVWCVASLRGSNNVALGCDEGSIIVKL 299

Query: 193 GREEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSV 241
           GREEPA+SMD NG KIIWA+HSEVQQANLK M      I  G  L L+V
Sbjct: 300 GREEPAMSMDANG-KIIWAKHSEVQQANLKAMGNA--EIKDGERLPLAV 345

This coatomer complex protein, essential for Golgi budding and vesicular trafficking, is a selective binding protein (RACK) for protein kinase C, epsilon type. It binds to Golgi membranes in a GTP-dependent manner.

Macaca fascicularis (taxid: 9541)

>sp|Q20168|COPB2_CAEEL Probable coatomer subunit beta' OS=Caenorhabditis elegans GN=F38E11.5 PE=3 SV=3

 Score =  273 bits (698), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 125/170 (73%), Positives = 146/170 (85%), Gaps = 2/170 (1%)

Query: 73  TLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHP 132
           TL GHEKGVNCVDYYHGG+KPY+ISGADD LVKIWDYQNKTCVQTL+GH QN+S+VCFHP
Sbjct: 180 TLEGHEKGVNCVDYYHGGEKPYIISGADDHLVKIWDYQNKTCVQTLDGHAQNVSSVCFHP 239

Query: 133 ELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKV 192
           ELP++ITGSED +VR+WH+ T+RLE +L YGLERVW I + KG+N +AIGYDEGSV LK+
Sbjct: 240 ELPLIITGSEDSTVRLWHANTYRLETTLNYGLERVWCIQAQKGANTIAIGYDEGSVTLKL 299

Query: 193 GREEPAVSMDVNGCKIIWARHSEVQQANLKTMP-EVFENITAGVVLTLSV 241
           GREEPAVSMD +G KI+WA+HSE+QQANLKT+  E  E I  G  L LSV
Sbjct: 300 GREEPAVSMDSSG-KILWAKHSEIQQANLKTISTEESEAIQDGERLPLSV 348

The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.

Caenorhabditis elegans (taxid: 6239)

>sp|Q5VQ78|COB21_ORYSJ Coatomer subunit beta'-1 OS=Oryza sativa subsp. japonica GN=Os06g0143900 PE=2 SV=1

 Score =  244 bits (623), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 109/169 (64%), Positives = 137/169 (81%), Gaps = 2/169 (1%)

Query: 73  TLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHP 132
           TL GH+KGVNCVDY+ GGD+PYLI+G+DD   K+WDYQ K+CVQTLEGH  NISAVCFHP
Sbjct: 180 TLDGHQKGVNCVDYFTGGDRPYLITGSDDSTAKVWDYQTKSCVQTLEGHTHNISAVCFHP 239

Query: 133 ELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKV 192
           ELPI+ITGSEDG+VR+WHS T+RLE +L YGLERVW +  +KGS  + IGYDEG++++K+
Sbjct: 240 ELPIIITGSEDGTVRIWHSTTYRLENTLNYGLERVWAVGYMKGSRRMVIGYDEGTIMIKM 299

Query: 193 GREEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSV 241
           GRE P  SMD +G KIIWA+H+E+Q  N+KT+   FE +T G  L L+V
Sbjct: 300 GREVPVASMDTSG-KIIWAKHNEIQTVNIKTVGAGFE-VTDGERLPLAV 346

The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9C827|COB22_ARATH Coatomer subunit beta'-2 OS=Arabidopsis thaliana GN=At1g52360 PE=2 SV=1

 Score =  238 bits (608), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 108/169 (63%), Positives = 135/169 (79%), Gaps = 2/169 (1%)

Query: 73  TLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHP 132
           TL  H+KGVNCVDY+ GGDKPYLI+G+DD   K+WDYQ K+CVQTLEGH  N+SAVCFHP
Sbjct: 180 TLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHP 239

Query: 133 ELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKV 192
           ELPI+ITGSEDG+VR+WH+ T+RLE +L YGLERVW I  +K S  V IGYDEG++++K+
Sbjct: 240 ELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYIKSSRRVVIGYDEGTIMVKL 299

Query: 193 GREEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSV 241
           GRE P  SMD  G KIIWA+H+E+Q AN+K++   +E +T G  L LSV
Sbjct: 300 GREIPVASMDNTG-KIIWAKHNEIQTANIKSIGADYE-VTDGERLPLSV 346

The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	381
193664638	935	PREDICTED: coatomer subunit beta'-like [	0.393	0.160	0.855	2e-77
157112032	946	coatomer [Aedes aegypti] gi|108878214|gb	0.440	0.177	0.775	3e-77
242008111	989	Coatomer subunit beta', putative [Pedicu	0.398	0.153	0.844	7e-77
158297839	952	AGAP004798-PA [Anopheles gambiae str. PE	0.440	0.176	0.769	1e-76
195472605	914	GE18651 [Drosophila yakuba] gi|194174691	0.440	0.183	0.786	1e-76
170036279	527	coatomer [Culex quinquefasciatus] gi|167	0.406	0.294	0.796	1e-76
194860652	913	GG23847 [Drosophila erecta] gi|190661496	0.440	0.184	0.786	2e-76
24584107	914	beta'-coatomer protein [Drosophila melan	0.398	0.166	0.831	2e-76
195351291	914	GM10466 [Drosophila sechellia] gi|194123	0.398	0.166	0.831	2e-76
195578964	913	GD23895 [Drosophila simulans] gi|1941913	0.398	0.166	0.831	2e-76

>gi|193664638|ref|XP_001947746.1| PREDICTED: coatomer subunit beta'-like [Acyrthosiphon pisum]

 Score =  296 bits (757), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 130/152 (85%), Positives = 143/152 (94%)

Query: 73  TLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHP 132
           TL GHEKGVNCVDYYH GDKPYLISGADDRLVKIWDYQNKTCVQTLEGH QNISAVCFHP
Sbjct: 180 TLEGHEKGVNCVDYYHAGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHAQNISAVCFHP 239

Query: 133 ELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKV 192
           ELPIV+TGSEDG+VR+WHSGT+RLE SL YGLERVWTI  L+GSNNVA+GYDEGS+++KV
Sbjct: 240 ELPIVLTGSEDGTVRIWHSGTYRLESSLNYGLERVWTICCLRGSNNVALGYDEGSIMVKV 299

Query: 193 GREEPAVSMDVNGCKIIWARHSEVQQANLKTM 224
           GREEPA+SMDV+G KI+WARHSE+QQANLK M
Sbjct: 300 GREEPAMSMDVHGGKIVWARHSEIQQANLKAM 331

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157112032|ref|XP_001657383.1| coatomer [Aedes aegypti] gi|108878214|gb|EAT42439.1| AAEL006040-PA, partial [Aedes aegypti]

 Score =  295 bits (754), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 131/169 (77%), Positives = 151/169 (89%), Gaps = 1/169 (0%)

Query: 73  TLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHP 132
           TL GHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGH QN+SAV FHP
Sbjct: 180 TLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHAQNVSAVSFHP 239

Query: 133 ELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKV 192
           ELPIV+TGSEDG++R+WHSGT+RLE SL YG ERVWTI+ ++G+NNVA+GYDEGS+++KV
Sbjct: 240 ELPIVLTGSEDGTIRIWHSGTYRLETSLNYGFERVWTIACMRGTNNVALGYDEGSIIIKV 299

Query: 193 GREEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSV 241
           GREEPA+SMDVNG KI+WARHSE+QQ NLK +PE  E I  G  L ++V
Sbjct: 300 GREEPAMSMDVNGGKIVWARHSEMQQVNLKALPEGTE-IKDGERLPVAV 347

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242008111|ref|XP_002424856.1| Coatomer subunit beta', putative [Pediculus humanus corporis] gi|212508406|gb|EEB12118.1| Coatomer subunit beta', putative [Pediculus humanus corporis]

 Score =  293 bits (751), Expect = 7e-77,   Method: Compositional matrix adjust.
 Identities = 130/154 (84%), Positives = 144/154 (93%)

Query: 73  TLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHP 132
           TL GHEKGVNCVDYYHGGDKPYLISGADDR VKIWDYQNKTCVQTLEGH QN++AVCFHP
Sbjct: 187 TLEGHEKGVNCVDYYHGGDKPYLISGADDRYVKIWDYQNKTCVQTLEGHAQNVTAVCFHP 246

Query: 133 ELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKV 192
           ELPIV+TGSEDG+VR+WH+GT+RLE  L YGLERVWTI+SL+GSN V++GYDEGSVL+KV
Sbjct: 247 ELPIVLTGSEDGTVRIWHAGTYRLESCLNYGLERVWTIASLRGSNYVSVGYDEGSVLVKV 306

Query: 193 GREEPAVSMDVNGCKIIWARHSEVQQANLKTMPE 226
           GREEPAVSMDVNG K+IWARHSE+QQANLK M E
Sbjct: 307 GREEPAVSMDVNGGKLIWARHSELQQANLKAMGE 340

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158297839|ref|XP_318012.4| AGAP004798-PA [Anopheles gambiae str. PEST] gi|157014519|gb|EAA13197.5| AGAP004798-PA [Anopheles gambiae str. PEST]

 Score =  293 bits (749), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 130/169 (76%), Positives = 151/169 (89%), Gaps = 1/169 (0%)

Query: 73  TLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHP 132
           TL GHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGH QN+SAV FHP
Sbjct: 180 TLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHAQNVSAVYFHP 239

Query: 133 ELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKV 192
           ELPI++TGSEDG++R+WHSGT+RLE SL YG ERVWTI+ ++G+NNVA+GYDEGS+++KV
Sbjct: 240 ELPILLTGSEDGTIRIWHSGTYRLETSLNYGFERVWTIACMRGTNNVALGYDEGSIIIKV 299

Query: 193 GREEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSV 241
           GREEPA+SMDVNG KI+WARHSE+QQ NLK +PE  E I  G  L ++V
Sbjct: 300 GREEPAMSMDVNGGKIVWARHSEMQQVNLKALPEGTE-IKDGERLPVAV 347

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195472605|ref|XP_002088590.1| GE18651 [Drosophila yakuba] gi|194174691|gb|EDW88302.1| GE18651 [Drosophila yakuba]

 Score =  292 bits (748), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 133/169 (78%), Positives = 151/169 (89%), Gaps = 1/169 (0%)

Query: 73  TLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHP 132
           TL GHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGH QNISAVCFHP
Sbjct: 180 TLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHAQNISAVCFHP 239

Query: 133 ELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKV 192
           ELPIV+TGSEDG+VR+WHSGT+RLE  L YG ERVWTISS++G+NNVA+GYDEGS+++KV
Sbjct: 240 ELPIVLTGSEDGTVRIWHSGTYRLETCLNYGFERVWTISSMRGTNNVALGYDEGSIIIKV 299

Query: 193 GREEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSV 241
           GREEPA+SMDV G KIIWA+HSE+QQ NLKT+ +  E I  G  L ++V
Sbjct: 300 GREEPAMSMDVVGGKIIWAKHSEMQQVNLKTIADGTE-IKDGERLPVAV 347

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170036279|ref|XP_001845992.1| coatomer [Culex quinquefasciatus] gi|167878869|gb|EDS42252.1| coatomer [Culex quinquefasciatus]

 Score =  292 bits (748), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 125/157 (79%), Positives = 144/157 (91%)

Query: 73  TLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHP 132
           TL GHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGH QN+SAV FHP
Sbjct: 229 TLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHAQNVSAVSFHP 288

Query: 133 ELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKV 192
           ELPIV+TGSEDG++R+WHSGT+RLE SL YG ERVW I+ ++G+NNVA+GYDEGS+++KV
Sbjct: 289 ELPIVLTGSEDGTIRIWHSGTYRLETSLNYGFERVWAIAGMRGTNNVALGYDEGSIIIKV 348

Query: 193 GREEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFE 229
           GREEPA+SMDVNG KI+WARHSE+QQ NLK +PE  +
Sbjct: 349 GREEPAMSMDVNGGKIVWARHSEMQQVNLKALPEALK 385

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194860652|ref|XP_001969629.1| GG23847 [Drosophila erecta] gi|190661496|gb|EDV58688.1| GG23847 [Drosophila erecta]

 Score =  292 bits (748), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 133/169 (78%), Positives = 151/169 (89%), Gaps = 1/169 (0%)

Query: 73  TLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHP 132
           TL GHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGH QNISAVCFHP
Sbjct: 180 TLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHAQNISAVCFHP 239

Query: 133 ELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKV 192
           ELPIV+TGSEDG+VR+WHSGT+RLE  L YG ERVWTISS++G+NNVA+GYDEGS+++KV
Sbjct: 240 ELPIVLTGSEDGTVRIWHSGTYRLETCLNYGFERVWTISSMRGTNNVALGYDEGSIIIKV 299

Query: 193 GREEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSV 241
           GREEPA+SMDV G KIIWA+HSE+QQ NLKT+ +  E I  G  L ++V
Sbjct: 300 GREEPAMSMDVVGGKIIWAKHSEMQQVNLKTIADGTE-IKDGERLPVAV 347

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|24584107|ref|NP_524836.2| beta'-coatomer protein [Drosophila melanogaster] gi|27923965|sp|O62621.2|COPB2_DROME RecName: Full=Coatomer subunit beta'; AltName: Full=Beta'-coat protein; Short=Beta'-COP gi|22946399|gb|AAF53294.2| beta'-coatomer protein [Drosophila melanogaster] gi|77403923|gb|ABA81840.1| GH18655p [Drosophila melanogaster]

 Score =  292 bits (748), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 128/154 (83%), Positives = 144/154 (93%)

Query: 73  TLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHP 132
           TL GHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGH QNISAVCFHP
Sbjct: 180 TLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHAQNISAVCFHP 239

Query: 133 ELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKV 192
           ELPIV+TGSEDG+VR+WHSGT+RLE  L YG ERVWTISS++G+NNVA+GYDEGS+++KV
Sbjct: 240 ELPIVLTGSEDGTVRIWHSGTYRLETCLNYGFERVWTISSMRGTNNVALGYDEGSIIIKV 299

Query: 193 GREEPAVSMDVNGCKIIWARHSEVQQANLKTMPE 226
           GREEPA+SMDV G KIIWA+HSE+QQ NLKT+ +
Sbjct: 300 GREEPAMSMDVVGSKIIWAKHSEMQQVNLKTIAD 333

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195351291|ref|XP_002042168.1| GM10466 [Drosophila sechellia] gi|194123992|gb|EDW46035.1| GM10466 [Drosophila sechellia]

 Score =  292 bits (747), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 128/154 (83%), Positives = 144/154 (93%)

Query: 73  TLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHP 132
           TL GHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGH QNISAVCFHP
Sbjct: 180 TLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHAQNISAVCFHP 239

Query: 133 ELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKV 192
           ELPIV+TGSEDG+VR+WHSGT+RLE  L YG ERVWTISS++G+NNVA+GYDEGS+++KV
Sbjct: 240 ELPIVLTGSEDGTVRIWHSGTYRLETCLNYGFERVWTISSMRGTNNVALGYDEGSIIIKV 299

Query: 193 GREEPAVSMDVNGCKIIWARHSEVQQANLKTMPE 226
           GREEPA+SMDV G KIIWA+HSE+QQ NLKT+ +
Sbjct: 300 GREEPAMSMDVVGGKIIWAKHSEMQQVNLKTIAD 333

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195578964|ref|XP_002079332.1| GD23895 [Drosophila simulans] gi|194191341|gb|EDX04917.1| GD23895 [Drosophila simulans]

 Score =  292 bits (747), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 128/154 (83%), Positives = 144/154 (93%)

Query: 73  TLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHP 132
           TL GHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGH QNISAVCFHP
Sbjct: 180 TLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHAQNISAVCFHP 239

Query: 133 ELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKV 192
           ELPIV+TGSEDG+VR+WHSGT+RLE  L YG ERVWTISS++G+NNVA+GYDEGS+++KV
Sbjct: 240 ELPIVLTGSEDGTVRIWHSGTYRLETCLNYGFERVWTISSMRGTNNVALGYDEGSIIIKV 299

Query: 193 GREEPAVSMDVNGCKIIWARHSEVQQANLKTMPE 226
           GREEPA+SMDV G KIIWA+HSE+QQ NLKT+ +
Sbjct: 300 GREEPAMSMDVVGGKIIWAKHSEMQQVNLKTIAD 333

Source: Drosophila simulans

Species: Drosophila simulans

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	381
FB|FBgn0025724	914	beta'Cop "beta'-coatomer prote	0.404	0.168	0.831	1.4e-71
UNIPROTKB|E1C016	913	COPB2 "Uncharacterized protein	0.435	0.181	0.751	2.7e-68
UNIPROTKB|G8JKX8	713	COPB2 "Coatomer subunit beta'"	0.435	0.232	0.745	7.2e-68
UNIPROTKB|P35605	906	COPB2 "Coatomer subunit beta'"	0.435	0.183	0.745	7.2e-68
UNIPROTKB|E2R667	906	COPB2 "Uncharacterized protein	0.435	0.183	0.745	7.2e-68
UNIPROTKB|B4DZI8	877	COPB2 "Coatomer protein comple	0.435	0.189	0.745	7.2e-68
UNIPROTKB|P35606	906	COPB2 "Coatomer subunit beta'"	0.435	0.183	0.745	7.2e-68
UNIPROTKB|F1SL54	906	COPB2 "Uncharacterized protein	0.435	0.183	0.745	7.2e-68
MGI|MGI:1354962	905	Copb2 "coatomer protein comple	0.435	0.183	0.745	7.2e-68
ZFIN|ZDB-GENE-010724-7	934	copb2 "coatomer protein comple	0.435	0.177	0.733	4e-67

FB|FBgn0025724 beta'Cop "beta'-coatomer protein" [Drosophila melanogaster (taxid:7227)]

 Score = 724 (259.9 bits), Expect = 1.4e-71, P = 1.4e-71
 Identities = 128/154 (83%), Positives = 144/154 (93%)

Query:    73 TLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHP 132
             TL GHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGH QNISAVCFHP
Sbjct:   180 TLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHAQNISAVCFHP 239

Query:   133 ELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKV 192
             ELPIV+TGSEDG+VR+WHSGT+RLE  L YG ERVWTISS++G+NNVA+GYDEGS+++KV
Sbjct:   240 ELPIVLTGSEDGTVRIWHSGTYRLETCLNYGFERVWTISSMRGTNNVALGYDEGSIIIKV 299

Query:   193 GREEPAVSMDVNGCKIIWARHSEVQQANLKTMPE 226
             GREEPA+SMDV G KIIWA+HSE+QQ NLKT+ +
Sbjct:   300 GREEPAMSMDVVGSKIIWAKHSEMQQVNLKTIAD 333

GO:0006890 "retrograde vesicle-mediated transport, Golgi to ER" evidence=NAS

GO:0030126 "COPI vesicle coat" evidence=NAS

GO:0048194 "Golgi vesicle budding" evidence=NAS

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=NAS

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005198 "structural molecule activity" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0030117 "membrane coat" evidence=IEA

GO:0010883 "regulation of lipid storage" evidence=IDA

GO:0005795 "Golgi stack" evidence=IDA

UNIPROTKB|E1C016 COPB2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 693 (249.0 bits), Expect = 2.7e-68, P = 2.7e-68
 Identities = 127/169 (75%), Positives = 147/169 (86%)

Query:    73 TLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHP 132
             TL GHEKGVNC+DYY GGDKPYLISGADDRLVKIWDYQNKTCVQTLEGH QN+S V FHP
Sbjct:   180 TLEGHEKGVNCIDYYSGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHAQNVSCVSFHP 239

Query:   133 ELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKV 192
             ELPI+ITGSEDG+VR+WHS T+RLE +L YG+ERVW ++SL+GSNNVA+GYDEGS+++K+
Sbjct:   240 ELPIIITGSEDGTVRIWHSSTYRLESTLNYGMERVWCVASLRGSNNVALGYDEGSIIVKL 299

Query:   193 GREEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSV 241
             GREEPA+SMD NG KIIWA+HSEVQQANLK M +    I  G  L L+V
Sbjct:   300 GREEPAMSMDANG-KIIWAKHSEVQQANLKAMGDA--EIKDGERLPLAV 345

GO:0005198 "structural molecule activity" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=IEA

GO:0015629 "actin cytoskeleton" evidence=IEA

GO:0030126 "COPI vesicle coat" evidence=IEA

UNIPROTKB|G8JKX8 COPB2 "Coatomer subunit beta'" [Bos taurus (taxid:9913)]

 Score = 689 (247.6 bits), Expect = 7.2e-68, P = 7.2e-68
 Identities = 126/169 (74%), Positives = 146/169 (86%)

Query:    73 TLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHP 132
             TL GHEKGVNC+DYY GGDKPYLISGADDRLVKIWDYQNKTCVQTLEGH QN+S   FHP
Sbjct:   151 TLEGHEKGVNCIDYYSGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHAQNVSCASFHP 210

Query:   133 ELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKV 192
             ELPI+ITGSEDG+VR+WHS T+RLE +L YG+ERVW ++SL+GSNNVA+GYDEGS+++K+
Sbjct:   211 ELPIIITGSEDGTVRIWHSSTYRLESTLNYGMERVWCVASLRGSNNVALGYDEGSIIVKL 270

Query:   193 GREEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSV 241
             GREEPA+SMD NG KIIWA+HSEVQQANLK M +    I  G  L L+V
Sbjct:   271 GREEPAMSMDANG-KIIWAKHSEVQQANLKAMGDA--EIKDGERLPLAV 316

GO:0030126 "COPI vesicle coat" evidence=IEA

GO:0015629 "actin cytoskeleton" evidence=IEA

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005198 "structural molecule activity" evidence=IEA

UNIPROTKB|P35605 COPB2 "Coatomer subunit beta'" [Bos taurus (taxid:9913)]

 Score = 689 (247.6 bits), Expect = 7.2e-68, P = 7.2e-68
 Identities = 126/169 (74%), Positives = 146/169 (86%)

Query:    73 TLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHP 132
             TL GHEKGVNC+DYY GGDKPYLISGADDRLVKIWDYQNKTCVQTLEGH QN+S   FHP
Sbjct:   180 TLEGHEKGVNCIDYYSGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHAQNVSCASFHP 239

Query:   133 ELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKV 192
             ELPI+ITGSEDG+VR+WHS T+RLE +L YG+ERVW ++SL+GSNNVA+GYDEGS+++K+
Sbjct:   240 ELPIIITGSEDGTVRIWHSSTYRLESTLNYGMERVWCVASLRGSNNVALGYDEGSIIVKL 299

Query:   193 GREEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSV 241
             GREEPA+SMD NG KIIWA+HSEVQQANLK M +    I  G  L L+V
Sbjct:   300 GREEPAMSMDANG-KIIWAKHSEVQQANLKAMGDA--EIKDGERLPLAV 345

GO:0005515 "protein binding" evidence=IPI

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=ISS;TAS

GO:0005794 "Golgi apparatus" evidence=ISS

GO:0000139 "Golgi membrane" evidence=ISS

GO:0030126 "COPI vesicle coat" evidence=ISS;IDA

GO:0005080 "protein kinase C binding" evidence=ISS

GO:0006890 "retrograde vesicle-mediated transport, Golgi to ER" evidence=TAS

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005198 "structural molecule activity" evidence=IEA

UNIPROTKB|E2R667 COPB2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 689 (247.6 bits), Expect = 7.2e-68, P = 7.2e-68
 Identities = 126/169 (74%), Positives = 146/169 (86%)

Query:    73 TLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHP 132
             TL GHEKGVNC+DYY GGDKPYLISGADDRLVKIWDYQNKTCVQTLEGH QN+S   FHP
Sbjct:   180 TLEGHEKGVNCIDYYSGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHAQNVSCASFHP 239

Query:   133 ELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKV 192
             ELPI+ITGSEDG+VR+WHS T+RLE +L YG+ERVW ++SL+GSNNVA+GYDEGS+++K+
Sbjct:   240 ELPIIITGSEDGTVRIWHSSTYRLESTLNYGMERVWCVASLRGSNNVALGYDEGSIIVKL 299

Query:   193 GREEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSV 241
             GREEPA+SMD NG KIIWA+HSEVQQANLK M +    I  G  L L+V
Sbjct:   300 GREEPAMSMDANG-KIIWAKHSEVQQANLKAMGDA--EIKDGERLPLAV 345

GO:0030126 "COPI vesicle coat" evidence=IEA

GO:0015629 "actin cytoskeleton" evidence=IEA

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005198 "structural molecule activity" evidence=IEA

UNIPROTKB|B4DZI8 COPB2 "Coatomer protein complex, subunit beta 2 (Beta prime), isoform CRA_b" [Homo sapiens (taxid:9606)]

 Score = 689 (247.6 bits), Expect = 7.2e-68, P = 7.2e-68
 Identities = 126/169 (74%), Positives = 146/169 (86%)

Query:    73 TLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHP 132
             TL GHEKGVNC+DYY GGDKPYLISGADDRLVKIWDYQNKTCVQTLEGH QN+S   FHP
Sbjct:   151 TLEGHEKGVNCIDYYSGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHAQNVSCASFHP 210

Query:   133 ELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKV 192
             ELPI+ITGSEDG+VR+WHS T+RLE +L YG+ERVW ++SL+GSNNVA+GYDEGS+++K+
Sbjct:   211 ELPIIITGSEDGTVRIWHSSTYRLESTLNYGMERVWCVASLRGSNNVALGYDEGSIIVKL 270

Query:   193 GREEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSV 241
             GREEPA+SMD NG KIIWA+HSEVQQANLK M +    I  G  L L+V
Sbjct:   271 GREEPAMSMDANG-KIIWAKHSEVQQANLKAMGDA--EIKDGERLPLAV 316

GO:0005198 "structural molecule activity" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0030117 "membrane coat" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0015629 "actin cytoskeleton" evidence=IDA

UNIPROTKB|P35606 COPB2 "Coatomer subunit beta'" [Homo sapiens (taxid:9606)]

 Score = 689 (247.6 bits), Expect = 7.2e-68, P = 7.2e-68
 Identities = 126/169 (74%), Positives = 146/169 (86%)

Query:    73 TLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHP 132
             TL GHEKGVNC+DYY GGDKPYLISGADDRLVKIWDYQNKTCVQTLEGH QN+S   FHP
Sbjct:   180 TLEGHEKGVNCIDYYSGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHAQNVSCASFHP 239

Query:   133 ELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKV 192
             ELPI+ITGSEDG+VR+WHS T+RLE +L YG+ERVW ++SL+GSNNVA+GYDEGS+++K+
Sbjct:   240 ELPIIITGSEDGTVRIWHSSTYRLESTLNYGMERVWCVASLRGSNNVALGYDEGSIIVKL 299

Query:   193 GREEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSV 241
             GREEPA+SMD NG KIIWA+HSEVQQANLK M +    I  G  L L+V
Sbjct:   300 GREEPAMSMDANG-KIIWAKHSEVQQANLKAMGDA--EIKDGERLPLAV 345

GO:0005198 "structural molecule activity" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0006890 "retrograde vesicle-mediated transport, Golgi to ER" evidence=TAS

GO:0030126 "COPI vesicle coat" evidence=IDA

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=IDA

GO:0005829 "cytosol" evidence=TAS

GO:0016044 "cellular membrane organization" evidence=TAS

GO:0048205 "COPI coating of Golgi vesicle" evidence=TAS

GO:0005737 "cytoplasm" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0015629 "actin cytoskeleton" evidence=IDA

UNIPROTKB|F1SL54 COPB2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 689 (247.6 bits), Expect = 7.2e-68, P = 7.2e-68
 Identities = 126/169 (74%), Positives = 146/169 (86%)

Query:    73 TLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHP 132
             TL GHEKGVNC+DYY GGDKPYLISGADDRLVKIWDYQNKTCVQTLEGH QN+S   FHP
Sbjct:   180 TLEGHEKGVNCIDYYSGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHAQNVSCASFHP 239

Query:   133 ELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKV 192
             ELPI+ITGSEDG+VR+WHS T+RLE +L YG+ERVW ++SL+GSNNVA+GYDEGS+++K+
Sbjct:   240 ELPIIITGSEDGTVRIWHSSTYRLESTLNYGMERVWCVASLRGSNNVALGYDEGSIIVKL 299

Query:   193 GREEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSV 241
             GREEPA+SMD NG KIIWA+HSEVQQANLK M +    I  G  L L+V
Sbjct:   300 GREEPAMSMDANG-KIIWAKHSEVQQANLKAMGDA--EIKDGERLPLAV 345

GO:0030126 "COPI vesicle coat" evidence=IEA

GO:0015629 "actin cytoskeleton" evidence=IEA

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005198 "structural molecule activity" evidence=IEA

MGI|MGI:1354962 Copb2 "coatomer protein complex, subunit beta 2 (beta prime)" [Mus musculus (taxid:10090)]

 Score = 689 (247.6 bits), Expect = 7.2e-68, P = 7.2e-68
 Identities = 126/169 (74%), Positives = 146/169 (86%)

Query:    73 TLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHP 132
             TL GHEKGVNC+DYY GGDKPYLISGADDRLVKIWDYQNKTCVQTLEGH QN+S   FHP
Sbjct:   180 TLEGHEKGVNCIDYYSGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHAQNVSCASFHP 239

Query:   133 ELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKV 192
             ELPI+ITGSEDG+VR+WHS T+RLE +L YG+ERVW ++SL+GSNNVA+GYDEGS+++K+
Sbjct:   240 ELPIIITGSEDGTVRIWHSSTYRLESTLNYGMERVWCVASLRGSNNVALGYDEGSIIVKL 299

Query:   193 GREEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSV 241
             GREEPA+SMD NG KIIWA+HSEVQQANLK M +    I  G  L L+V
Sbjct:   300 GREEPAMSMDANG-KIIWAKHSEVQQANLKAMGDT--EIKDGERLPLAV 345

GO:0000139 "Golgi membrane" evidence=ISO

GO:0005080 "protein kinase C binding" evidence=ISO

GO:0005198 "structural molecule activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=ISA;IDA

GO:0006810 "transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=ISO

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0030117 "membrane coat" evidence=IEA

GO:0030126 "COPI vesicle coat" evidence=ISO

GO:0031410 "cytoplasmic vesicle" evidence=IEA

ZFIN|ZDB-GENE-010724-7 copb2 "coatomer protein complex, subunit beta 2" [Danio rerio (taxid:7955)]

 Score = 682 (245.1 bits), Expect = 4.0e-67, P = 4.0e-67
 Identities = 124/169 (73%), Positives = 146/169 (86%)

Query:    73 TLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHP 132
             TL GH+KGVNC+DYY GGDKPYLISGADDRLVKIWDYQNKTCVQTLEGH QN+S V FHP
Sbjct:   180 TLEGHDKGVNCIDYYSGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHAQNVSCVNFHP 239

Query:   133 ELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKV 192
             ELPI+ITGSEDG+VR+WHS T+RLE +L YG+ERVW +S L+GSN+VA+GYDEGS+++K+
Sbjct:   240 ELPIIITGSEDGTVRIWHSSTYRLESTLNYGMERVWCVSGLRGSNSVALGYDEGSIIIKL 299

Query:   193 GREEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSV 241
             GREEPA+SMD NG KIIWA+HSE+QQANLK M +    I  G  L L+V
Sbjct:   300 GREEPAMSMDTNG-KIIWAKHSEIQQANLKAMGDA--EIKDGERLPLAV 345

GO:0005198 "structural molecule activity" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0030117 "membrane coat" evidence=IEA

GO:0030903 "notochord development" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P35605	COPB2_BOVIN	No assigned EC number	0.7455	0.4356	0.1832	yes	N/A
P35606	COPB2_HUMAN	No assigned EC number	0.7455	0.4356	0.1832	yes	N/A
O35142	COPB2_RAT	No assigned EC number	0.7396	0.4356	0.1834	yes	N/A
O55029	COPB2_MOUSE	No assigned EC number	0.7455	0.4356	0.1834	yes	N/A
Q9C827	COB22_ARATH	No assigned EC number	0.6390	0.4383	0.1803	yes	N/A
Q5R664	COPB2_PONAB	No assigned EC number	0.7455	0.4356	0.1832	yes	N/A
Q20168	COPB2_CAEEL	No assigned EC number	0.7352	0.4409	0.168	yes	N/A
Q5VQ78	COB21_ORYSJ	No assigned EC number	0.6449	0.4383	0.1841	yes	N/A
Q54YD8	COPB2_DICDI	No assigned EC number	0.5688	0.4304	0.1631	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	381
cd10238	375	cd10238, HSPA14-like_NBD, Nucleotide-binding domai	6e-23
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	8e-20
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-19
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-19
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	7e-19
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	4e-16
cd10230	388	cd10230, HYOU1-like_NBD, Nucleotide-binding domain	5e-14
cd10230	388	cd10230, HYOU1-like_NBD, Nucleotide-binding domain	5e-14
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	7e-14
cd10233	376	cd10233, HSPA1-2_6-8-like_NBD, Nucleotide-binding	6e-13
cd10232	386	cd10232, ScSsz1p_like_NBD, Nucleotide-binding doma	3e-11
cd10241	374	cd10241, HSPA5-like_NBD, Nucleotide-binding domain	6e-11
cd10170	369	cd10170, HSP70_NBD, Nucleotide-binding domain of t	6e-10
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	4e-09
cd10228	381	cd10228, HSPA4_like_NDB, Nucleotide-binding domain	5e-09
smart00320	40	smart00320, WD40, WD40 repeats	7e-09
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	1e-08
PTZ00009	653	PTZ00009, PTZ00009, heat shock 70 kDa protein; Pro	1e-08
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-08
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-08
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	5e-08
pfam00012	598	pfam00012, HSP70, Hsp70 protein	5e-08
cd10170	369	cd10170, HSP70_NBD, Nucleotide-binding domain of t	2e-07
COG0443	579	COG0443, DnaK, Molecular chaperone [Posttranslatio	3e-07
cd10232	386	cd10232, ScSsz1p_like_NBD, Nucleotide-binding doma	7e-07
cd10241	374	cd10241, HSPA5-like_NBD, Nucleotide-binding domain	8e-07
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	4e-06
cd10228	381	cd10228, HSPA4_like_NDB, Nucleotide-binding domain	5e-06
PTZ00009	653	PTZ00009, PTZ00009, heat shock 70 kDa protein; Pro	6e-06
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	7e-06
smart00320	40	smart00320, WD40, WD40 repeats	1e-05
COG0443	579	COG0443, DnaK, Molecular chaperone [Posttranslatio	1e-05
cd11732	377	cd11732, HSP105-110_like_NBD, Nucleotide-binding d	4e-05
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	5e-05
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-04
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	7e-04
pfam00012	598	pfam00012, HSP70, Hsp70 protein	8e-04
cd10231	415	cd10231, YegD_like, Escherichia coli YegD, a putat	0.003
cd10238	375	cd10238, HSPA14-like_NBD, Nucleotide-binding domai	0.004

>gnl|CDD|212680 cd10238, HSPA14-like_NBD, Nucleotide-binding domain of human HSPA14 and similar proteins

 Score = 98.6 bits (246), Expect = 6e-23
 Identities = 36/75 (48%), Positives = 49/75 (65%)

Query: 246 KYRLDISDSHRSVAKLRAAAETCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIG 305
           K++ D+  + R++ KL  AAE    +LSTL S+N FVESLY+G+DF  +VSRARFESL  
Sbjct: 245 KWKQDVRGNARAMMKLNNAAEVAKQILSTLPSANCFVESLYEGIDFQCSVSRARFESLCS 304

Query: 306 GLLTSFVQPCMHVLS 320
            L    ++P   VL 
Sbjct: 305 SLFPKCLEPIEKVLE 319

Human HSPA14 (also known as 70-kDa heat shock protein 14, HSP70L1, HSP70-4; the gene encoding HSPA14 maps to 10p13), is ribosome-associated and belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). HSPA14 interacts with the J-protein MPP11 to form the mammalian ribosome-associated complex (mRAC). HSPA14 participates in a pathway along with Nijmegen breakage syndrome 1 (NBS1, also known as p85 or nibrin), heat shock transcription factor 4b (HSF4b), and HSPA4 (belonging to a different subfamily), that induces tumor migration, invasion, and transformation. HSPA14 is a potent T helper cell (Th1) polarizing adjuvant that contributes to antitumor immune responses. Length = 375

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 88.2 bits (219), Expect = 8e-20
 Identities = 37/120 (30%), Positives = 62/120 (51%), Gaps = 2/120 (1%)

Query: 71  LKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCF 130
           L+TL GH   V  V      D  YL SG+ D+ +++WD +   CV+TL GH   +S+V F
Sbjct: 44  LRTLKGHTGPVRDVAASA--DGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAF 101

Query: 131 HPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLL 190
            P+  I+ + S D +++VW   T +   +L    + V +++       VA    +G++ L
Sbjct: 102 SPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKL 161

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 87.8 bits (218), Expect = 1e-19
 Identities = 31/79 (39%), Positives = 50/79 (63%), Gaps = 2/79 (2%)

Query: 71  LKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCF 130
           L TL GHE GVN V +   G    L SG++D  +++WD +   CVQTL GH  +++++ +
Sbjct: 212 LGTLRGHENGVNSVAFSPDGY--LLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAW 269

Query: 131 HPELPIVITGSEDGSVRVW 149
            P+   + +GS DG++R+W
Sbjct: 270 SPDGKRLASGSADGTIRIW 288

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 87.4 bits (217), Expect = 1e-19
 Identities = 37/120 (30%), Positives = 64/120 (53%), Gaps = 2/120 (1%)

Query: 71  LKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCF 130
           + TL GH   VN V +   G+K  L+S + D  +K+WD     C+ TL GH   +++V F
Sbjct: 170 VATLTGHTGEVNSVAFSPDGEK--LLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAF 227

Query: 131 HPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLL 190
            P+  ++ +GSEDG++RVW   T     +L+     V +++       +A G  +G++ +
Sbjct: 228 SPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRI 287

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 85.5 bits (212), Expect = 7e-19
 Identities = 33/118 (27%), Positives = 61/118 (51%), Gaps = 2/118 (1%)

Query: 71  LKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCF 130
           L TL GH   VN V +    D  ++ S + D  +K+WD +   CV TL GH   +++V F
Sbjct: 128 LTTLRGHTDWVNSVAF--SPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAF 185

Query: 131 HPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSV 188
            P+   +++ S DG++++W   T +   +L      V +++       +A G ++G++
Sbjct: 186 SPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTI 243

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 77.4 bits (191), Expect = 4e-16
 Identities = 32/121 (26%), Positives = 61/121 (50%), Gaps = 2/121 (1%)

Query: 70  ILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVC 129
            ++TL GH   V+ V +    D   L S + D+ +K+WD +   C+ TL GH   +++V 
Sbjct: 85  CVRTLTGHTSYVSSVAFSP--DGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVA 142

Query: 130 FHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVL 189
           F P+   V + S+DG++++W   T +   +LT     V +++       +     +G++ 
Sbjct: 143 FSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIK 202

Query: 190 L 190
           L
Sbjct: 203 L 203

Length = 289

>gnl|CDD|212672 cd10230, HYOU1-like_NBD, Nucleotide-binding domain of human HYOU1 and similar proteins

 Score = 72.6 bits (179), Expect = 5e-14
 Identities = 27/79 (34%), Positives = 41/79 (51%), Gaps = 3/79 (3%)

Query: 249 LDISDSHRSVAKLRAAAETCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIGGLL 308
           +D+  + R++AKL   A     VLS    + V +ESLYD +DF   ++RA FE L   L 
Sbjct: 261 VDVRTNPRAMAKLLKEANRAKEVLSANSEAPVSIESLYDDIDFKTKITRAEFEELCADLF 320

Query: 309 TSFVQPCMHVLSTLQSSNV 327
              V P   +   L+S+ +
Sbjct: 321 ERAVAP---IKKALESAGL 336

This subgroup includes human HYOU1 (also known as human hypoxia up-regulated 1, GRP170; HSP12A; ORP150; GRP-170; ORP-150; the human HYOU1 gene maps to11q23.1-q23.3) and Saccharomyces cerevisiae Lhs1p (also known as Cer1p, SsI1). Mammalian HYOU1 functions as a nucleotide exchange factor (NEF) for HSPA5 (alos known as BiP, Grp78 or HspA5) and may also function as a HSPA5-independent chaperone. S. cerevisiae Lhs1p, does not have a detectable endogenous ATPase activity like canonical HSP70s, but functions as a NEF for Kar2p; it's interaction with Kar2p is stimulated by nucleotide-binding. In addition, Lhs1p has a nucleotide-independent holdase activity that prevents heat-induced aggregation of proteins in vitro. This subgroup belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family. HSP105/110s are believed to function generally as co-chaperones of HSP70 chaperones, acting as NEFs, to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is also regulated by J-domain proteins. Length = 388

>gnl|CDD|212672 cd10230, HYOU1-like_NBD, Nucleotide-binding domain of human HYOU1 and similar proteins

 Score = 72.2 bits (178), Expect = 5e-14
 Identities = 23/61 (37%), Positives = 32/61 (52%)

Query: 317 HVLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIGGLLTSFVQPIEDVLSRSNITHDQI 376
            VLS    + V +ESLYD +DF   ++RA FE L   L    V PI+  L  + +T   I
Sbjct: 282 EVLSANSEAPVSIESLYDDIDFKTKITRAEFEELCADLFERAVAPIKKALESAGLTLKDI 341

Query: 377 N 377
           +
Sbjct: 342 D 342

This subgroup includes human HYOU1 (also known as human hypoxia up-regulated 1, GRP170; HSP12A; ORP150; GRP-170; ORP-150; the human HYOU1 gene maps to11q23.1-q23.3) and Saccharomyces cerevisiae Lhs1p (also known as Cer1p, SsI1). Mammalian HYOU1 functions as a nucleotide exchange factor (NEF) for HSPA5 (alos known as BiP, Grp78 or HspA5) and may also function as a HSPA5-independent chaperone. S. cerevisiae Lhs1p, does not have a detectable endogenous ATPase activity like canonical HSP70s, but functions as a NEF for Kar2p; it's interaction with Kar2p is stimulated by nucleotide-binding. In addition, Lhs1p has a nucleotide-independent holdase activity that prevents heat-induced aggregation of proteins in vitro. This subgroup belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family. HSP105/110s are believed to function generally as co-chaperones of HSP70 chaperones, acting as NEFs, to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is also regulated by J-domain proteins. Length = 388

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 70.8 bits (174), Expect = 7e-14
 Identities = 25/79 (31%), Positives = 42/79 (53%), Gaps = 2/79 (2%)

Query: 71  LKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCF 130
            +TL GH  GV CV +    D   L +G+ D  +K+WD +    ++TL+GH   +  V  
Sbjct: 2   RRTLKGHTGGVTCVAF--SPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAA 59

Query: 131 HPELPIVITGSEDGSVRVW 149
             +   + +GS D ++R+W
Sbjct: 60  SADGTYLASGSSDKTIRLW 78

Length = 289

>gnl|CDD|212675 cd10233, HSPA1-2_6-8-like_NBD, Nucleotide-binding domain of HSPA1-A, -B, -L, HSPA-2, -6, -7, -8, and similar proteins

 Score = 68.9 bits (169), Expect = 6e-13
 Identities = 26/74 (35%), Positives = 47/74 (63%)

Query: 246 KYRLDISDSHRSVAKLRAAAETCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIG 305
           K++ DIS + R++ +LR A E     LS+   +++ ++SL++G+DF+ +++RARFE L  
Sbjct: 243 KHKKDISGNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGIDFYTSITRARFEELCA 302

Query: 306 GLLTSFVQPCMHVL 319
            L    ++P   VL
Sbjct: 303 DLFRGTLEPVEKVL 316

This subfamily includes human HSPA1A (70-kDa heat shock protein 1A, also known as HSP72; HSPA1; HSP70I; HSPA1B; HSP70-1; HSP70-1A), HSPA1B (70-kDa heat shock protein 1B, also known as HSPA1A; HSP70-2; HSP70-1B), and HSPA1L (70-kDa heat shock protein 1-like, also known as HSP70T; hum70t; HSP70-1L; HSP70-HOM). The genes for these three HSPA1 proteins map in close proximity on the major histocompatibility complex (MHC) class III region on chromosome 6, 6p21.3. This subfamily also includes human HSPA8 (heat shock 70kDa protein 8, also known as LAP1; HSC54; HSC70; HSC71; HSP71; HSP73; NIP71; HSPA10; the HSPA8 gene maps to 11q24.1), human HSPA2 (70-kDa heat shock protein 2, also known as HSP70-2; HSP70-3, the HSPA2 gene maps to 14q24.1), human HSPA6 (also known as heat shock 70kDa protein 6 (HSP70B') gi 94717614, the HSPA6 gene maps to 1q23.3), human HSPA7 (heat shock 70kDa protein 7 , also known as HSP70B; the HSPA7 gene maps to 1q23.3) and Saccharmoyces cerevisiae Stress-Seventy subfamily B/Ssb1p. This subfamily belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Associations of polymorphisms within the MHC-III HSP70 gene locus with longevity, systemic lupus erythematosus, Meniere's disease, noise-induced hearing loss, high-altitude pulmonary edema, and coronary heart disease, have been found. HSPA2 is involved in cancer cell survival, is required for maturation of male gametophytes, and is linked to male infertility. The induction of HSPA6 is a biomarker of cellular stress. HSPA8 participates in the folding and trafficking of client proteins to different subcellular compartments, and in the signal transduction and apoptosis process; it has been shown to protect cardiomyocytes against oxidative stress partly through an interaction with alpha-enolase. S. cerevisiae Ssb1p, is part of the ribosome-associated complex (RAC), it acts as a chaperone for nascent polypeptides, and is important for translation fidelity; Ssb1p is also a [PSI+] prion-curing factor. Length = 376

>gnl|CDD|212674 cd10232, ScSsz1p_like_NBD, Nucleotide-binding domain of Saccharmomyces cerevisiae Ssz1pp and similar proteins

 Score = 63.9 bits (156), Expect = 3e-11
 Identities = 28/82 (34%), Positives = 43/82 (52%), Gaps = 3/82 (3%)

Query: 246 KYRLDISDSHRSVAKLRAAAETCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIG 305
           K + D   + R++AKLRA +E     LS   S+   VESL +G+DFH +++R RFE L  
Sbjct: 249 KTKTDPRTNARALAKLRAESEITKKTLSASTSATCSVESLAEGIDFHSSINRLRFELLAS 308

Query: 306 GLLTSFVQPCMHVLSTLQSSNV 327
            +   F      V S +  + +
Sbjct: 309 AVFRQFAA---FVTSAVAKAGL 327

Saccharomyces cerevisiae Ssz1p (also known as /Pdr13p/YHR064C) belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Some family members are not chaperones but rather, function as NEFs for their Hsp70 partners, while other family members function as both chaperones and NEFs. Ssz1 does not function as a chaperone; it facilitates the interaction between the HSP70 Ssb protein and its partner J-domain protein Zuo1 (also known as zuotin) on the ribosome. Ssz1 is found in a stable heterodimer (called RAC, ribosome associated complex) with Zuo1. Zuo1 can only stimulate the ATPase activity of Ssb, when it is in complex with Ssz1. Ssz1 binds ATP but neither nucleotide-binding, hydrolysis, or its SBD, is needed for its in vivo function. Length = 386

>gnl|CDD|212681 cd10241, HSPA5-like_NBD, Nucleotide-binding domain of human HSPA5 and similar proteins

 Score = 63.1 bits (154), Expect = 6e-11
 Identities = 29/84 (34%), Positives = 46/84 (54%), Gaps = 2/84 (2%)

Query: 246 KYRLDISDSHRSVAKLRAAAETCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIG 305
           K+  DIS   R++ KLR   E     LS+   + + +ESL+DG DF   ++RA+FE L  
Sbjct: 244 KHGKDISKDKRALQKLRREVEKAKRALSSQHQTRIEIESLFDGEDFSETLTRAKFEELNM 303

Query: 306 GLLTSFVQPCMHVL--STLQSSNV 327
            L    ++P   VL  + L+ S++
Sbjct: 304 DLFKKTLKPVKKVLEDADLKKSDI 327

This subfamily includes human HSPA5 (also known as 70-kDa heat shock protein 5, glucose-regulated protein 78/GRP78, and immunoglobulin heavy chain-binding protein/BIP, MIF2; the gene encoding HSPA5 maps to 9q33.3.), Sacchaormyces cerevisiae Kar2p (also known as Grp78p), and related proteins. This subfamily belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. HSPA5 and Kar2p are chaperones of the endoplasmic reticulum (ER). Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Multiple ER DNAJ domain proteins have been identified and may exist in distinct complexes with HSPA5 in various locations in the ER, for example DNAJC3-p58IPK in the lumen. HSPA5-NEFs include SIL1 and an atypical HSP70 family protein HYOU1/ORP150. The ATPase activity of Kar2p is stimulated by the NEFs: Sil1p and Lhs1p. Length = 374

>gnl|CDD|212667 cd10170, HSP70_NBD, Nucleotide-binding domain of the HSP70 family

 Score = 59.9 bits (146), Expect = 6e-10
 Identities = 21/74 (28%), Positives = 35/74 (47%)

Query: 246 KYRLDISDSHRSVAKLRAAAETCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIG 305
           K  +D+    R++ +L+ AAE     LS+ + + + +  L  G D    ++R  FE LI 
Sbjct: 240 KGGIDLRLDPRALRRLKEAAEKAKIALSSSEEATITLPGLGSGGDLEVELTREEFEELIR 299

Query: 306 GLLTSFVQPCMHVL 319
            LL   +     VL
Sbjct: 300 PLLERTIDLVERVL 313

HSP70 (70-kDa heat shock protein) family chaperones assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Some HSP70 family members are not chaperones but instead, function as NEFs to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle, some may function as both chaperones and NEFs. Length = 369

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 57.8 bits (138), Expect = 4e-09
 Identities = 33/119 (27%), Positives = 60/119 (50%), Gaps = 8/119 (6%)

Query: 69  LILKTLYGHEKG-VNCVDYYHGGDKPYLISGADDRLVKIWDYQN-KTCVQTLEGHGQNIS 126
           L+  TL GH    V+        D   L SG+ D  +++WD ++  + ++TL GH  ++ 
Sbjct: 233 LLRSTLSGHSDSVVSSFSP----DGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVL 288

Query: 127 AVCFHPELPIVITGSEDGSVRVWHSGTHRL--EISLTYGLERVWTISSLKGSNNVAIGY 183
           +V F P+  ++ +GS DG+VR+W   T +L   ++L      V ++S     + +  G 
Sbjct: 289 SVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGG 347

Length = 466

>gnl|CDD|212670 cd10228, HSPA4_like_NDB, Nucleotide-binding domain of 105/110 kDa heat shock proteins including HSPA4 and similar proteins

 Score = 57.1 bits (139), Expect = 5e-09
 Identities = 22/88 (25%), Positives = 39/88 (44%), Gaps = 3/88 (3%)

Query: 246 KYRLDISDSHRSVAKLRAAAETCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIG 305
           KY++D+  + ++  +L AA E    VLS    + + +E L +  D    + R  FE L  
Sbjct: 249 KYKIDVLSNPKARLRLLAACEKLKKVLSANTEAPLNIECLMEDKDVSGKIKREEFEELCA 308

Query: 306 GLLTSFVQPCMHVLSTLQSSNVFVESLY 333
            LL    +P       L  + +  E ++
Sbjct: 309 PLLERVEEPLE---KALAEAGLTKEDIH 333

This subgroup includes the human proteins, HSPA4 (also known as 70-kDa heat shock protein 4, APG-2, HS24/P52, hsp70 RY, and HSPH2; the human HSPA4 gene maps to 5q31.1), HSPA4L (also known as 70-kDa heat shock protein 4-like, APG-1, HSPH3, and OSP94; the human HSPA4L gene maps to 4q28), and HSPH1 (also known as heat shock 105kDa/110kDa protein 1, HSP105; HSP105A; HSP105B; NY-CO-25; the human HSPH1 gene maps to 13q12.3), Saccharomyces cerevisiae Sse1p and Sse2p, and a sea urchin sperm receptor. It belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family, and includes proteins believed to function generally as co-chaperones of HSP70 chaperones, acting as nucleotide exchange factors (NEFs), to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is also regulated by J-domain proteins. Length = 381

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 50.8 bits (122), Expect = 7e-09
 Identities = 12/40 (30%), Positives = 27/40 (67%)

Query: 111 NKTCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWH 150
           +   ++TL+GH   +++V F P+   + +GS+DG++++W 
Sbjct: 1   SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 50.0 bits (120), Expect = 1e-08
 Identities = 15/39 (38%), Positives = 27/39 (69%)

Query: 112 KTCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWH 150
              ++TL+GH   +++V F P+  ++ +GS+DG+VRVW 
Sbjct: 1   GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|240227 PTZ00009, PTZ00009, heat shock 70 kDa protein; Provisional

 Score = 56.3 bits (136), Expect = 1e-08
 Identities = 24/70 (34%), Positives = 42/70 (60%)

Query: 250 DISDSHRSVAKLRAAAETCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIGGLLT 309
           D+S + R++ +LR   E     LS+   + + ++SL++G+D++  +SRARFE L G    
Sbjct: 254 DLSSNQRALRRLRTQCERAKRTLSSSTQATIEIDSLFEGIDYNVTISRARFEELCGDYFR 313

Query: 310 SFVQPCMHVL 319
           + +QP   VL
Sbjct: 314 NTLQPVEKVL 323

Length = 653

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 54.6 bits (132), Expect = 2e-08
 Identities = 21/77 (27%), Positives = 39/77 (50%)

Query: 114 CVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSL 173
             +TL+GH   ++ V F P+  ++ TGS DG+++VW   T  L  +L      V  +++ 
Sbjct: 1   LRRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAAS 60

Query: 174 KGSNNVAIGYDEGSVLL 190
                +A G  + ++ L
Sbjct: 61  ADGTYLASGSSDKTIRL 77

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 55.5 bits (132), Expect = 2e-08
 Identities = 33/122 (27%), Positives = 60/122 (49%), Gaps = 2/122 (1%)

Query: 70  ILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVC 129
           +++TL GH + V  + +   G        + D  +K+WD +    + TL GH   +S++ 
Sbjct: 147 LIRTLEGHSESVTSLAFSPDGKL-LASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLA 205

Query: 130 FHPELPIVI-TGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSV 188
           F P+  ++I +GS DG++R+W   T +L  S   G       S     + +A G  +G++
Sbjct: 206 FSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTI 265

Query: 189 LL 190
            L
Sbjct: 266 RL 267

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 54.3 bits (129), Expect = 5e-08
 Identities = 40/145 (27%), Positives = 70/145 (48%), Gaps = 3/145 (2%)

Query: 71  LKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCF 130
             TL GHE  V+ + +   G    +  G+DD  +++WD +    ++TLEGH  N+ +V F
Sbjct: 321 SLTLKGHEGPVSSLSFSPDGSL-LVSGGSDDGTIRLWDLRTGKPLKTLEGHS-NVLSVSF 378

Query: 131 HPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSV-L 189
            P+  +V +GS DG+VR+W   T  L  +L     RV ++       ++A G  + ++ L
Sbjct: 379 SPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRL 438

Query: 190 LKVGREEPAVSMDVNGCKIIWARHS 214
             +     +VS   +G  +      
Sbjct: 439 WDLKTSLKSVSFSPDGKVLASKSSD 463

Length = 466

>gnl|CDD|215656 pfam00012, HSP70, Hsp70 protein

 Score = 54.5 bits (132), Expect = 5e-08
 Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 2/77 (2%)

Query: 246 KYRLDISDSHRSVAKLRAAAETCMHVLSTLQSS-NVFVESLY-DGLDFHHNVSRARFESL 303
           KY +D+S   R++ +LR AAE     LS+ Q+  N+   +   DG D    ++RA+FE L
Sbjct: 241 KYGIDLSKDPRALQRLREAAEKAKIELSSNQTEINLPFITAMADGKDVSGTLTRAKFEEL 300

Query: 304 IGGLLTSFVQPCMHVLS 320
              L    ++P    L 
Sbjct: 301 CADLFERTLEPVEKALK 317

Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region. Length = 598

>gnl|CDD|212667 cd10170, HSP70_NBD, Nucleotide-binding domain of the HSP70 family

 Score = 52.2 bits (126), Expect = 2e-07
 Identities = 16/60 (26%), Positives = 30/60 (50%)

Query: 319 LSTLQSSNVFVESLYDGLDFHHNVSRARFESLIGGLLTSFVQPIEDVLSRSNITHDQINK 378
           LS+ + + + +  L  G D    ++R  FE LI  LL   +  +E VL+ + +  + I+ 
Sbjct: 266 LSSSEEATITLPGLGSGGDLEVELTREEFEELIRPLLERTIDLVERVLADAGLKPEDIDA 325

HSP70 (70-kDa heat shock protein) family chaperones assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Some HSP70 family members are not chaperones but instead, function as NEFs to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle, some may function as both chaperones and NEFs. Length = 369

>gnl|CDD|223520 COG0443, DnaK, Molecular chaperone [Posttranslational modification, protein turnover, chaperones]

 Score = 52.0 bits (125), Expect = 3e-07
 Identities = 21/74 (28%), Positives = 38/74 (51%)

Query: 246 KYRLDISDSHRSVAKLRAAAETCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIG 305
           K  +D+     ++ +LR AAE     LS+   +++ + S+   +D    ++RA+FE LI 
Sbjct: 227 KGGIDLRSDKAALQRLREAAEKAKIELSSATQTSINLPSIGGDIDLLKELTRAKFEELIL 286

Query: 306 GLLTSFVQPCMHVL 319
            LL   ++P    L
Sbjct: 287 DLLERTIEPVEQAL 300

Length = 579

>gnl|CDD|212674 cd10232, ScSsz1p_like_NBD, Nucleotide-binding domain of Saccharmomyces cerevisiae Ssz1pp and similar proteins

 Score = 50.5 bits (121), Expect = 7e-07
 Identities = 18/59 (30%), Positives = 31/59 (52%)

Query: 318 VLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIGGLLTSFVQPIEDVLSRSNITHDQI 376
            LS   S+   VESL +G+DFH +++R RFE L   +   F   +   ++++ +    I
Sbjct: 274 TLSASTSATCSVESLAEGIDFHSSINRLRFELLASAVFRQFAAFVTSAVAKAGLDALDI 332

Saccharomyces cerevisiae Ssz1p (also known as /Pdr13p/YHR064C) belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Some family members are not chaperones but rather, function as NEFs for their Hsp70 partners, while other family members function as both chaperones and NEFs. Ssz1 does not function as a chaperone; it facilitates the interaction between the HSP70 Ssb protein and its partner J-domain protein Zuo1 (also known as zuotin) on the ribosome. Ssz1 is found in a stable heterodimer (called RAC, ribosome associated complex) with Zuo1. Zuo1 can only stimulate the ATPase activity of Ssb, when it is in complex with Ssz1. Ssz1 binds ATP but neither nucleotide-binding, hydrolysis, or its SBD, is needed for its in vivo function. Length = 386

>gnl|CDD|212681 cd10241, HSPA5-like_NBD, Nucleotide-binding domain of human HSPA5 and similar proteins

 Score = 50.0 bits (120), Expect = 8e-07
 Identities = 19/61 (31%), Positives = 35/61 (57%)

Query: 317 HVLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIGGLLTSFVQPIEDVLSRSNITHDQI 376
             LS+   + + +ESL+DG DF   ++RA+FE L   L    ++P++ VL  +++    I
Sbjct: 268 RALSSQHQTRIEIESLFDGEDFSETLTRAKFEELNMDLFKKTLKPVKKVLEDADLKKSDI 327

Query: 377 N 377
           +
Sbjct: 328 D 328

This subfamily includes human HSPA5 (also known as 70-kDa heat shock protein 5, glucose-regulated protein 78/GRP78, and immunoglobulin heavy chain-binding protein/BIP, MIF2; the gene encoding HSPA5 maps to 9q33.3.), Sacchaormyces cerevisiae Kar2p (also known as Grp78p), and related proteins. This subfamily belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. HSPA5 and Kar2p are chaperones of the endoplasmic reticulum (ER). Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Multiple ER DNAJ domain proteins have been identified and may exist in distinct complexes with HSPA5 in various locations in the ER, for example DNAJC3-p58IPK in the lumen. HSPA5-NEFs include SIL1 and an atypical HSP70 family protein HYOU1/ORP150. The ATPase activity of Kar2p is stimulated by the NEFs: Sil1p and Lhs1p. Length = 374

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 43.1 bits (102), Expect = 4e-06
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 2/39 (5%)

Query: 70  ILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWD 108
           +L+TL GH   V  V +    D   L SG+DD  V++WD
Sbjct: 3   LLRTLKGHTGPVTSVAFSP--DGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|212670 cd10228, HSPA4_like_NDB, Nucleotide-binding domain of 105/110 kDa heat shock proteins including HSPA4 and similar proteins

 Score = 47.9 bits (115), Expect = 5e-06
 Identities = 17/59 (28%), Positives = 28/59 (47%)

Query: 318 VLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIGGLLTSFVQPIEDVLSRSNITHDQI 376
           VLS    + + +E L +  D    + R  FE L   LL    +P+E  L+ + +T + I
Sbjct: 274 VLSANTEAPLNIECLMEDKDVSGKIKREEFEELCAPLLERVEEPLEKALAEAGLTKEDI 332

This subgroup includes the human proteins, HSPA4 (also known as 70-kDa heat shock protein 4, APG-2, HS24/P52, hsp70 RY, and HSPH2; the human HSPA4 gene maps to 5q31.1), HSPA4L (also known as 70-kDa heat shock protein 4-like, APG-1, HSPH3, and OSP94; the human HSPA4L gene maps to 4q28), and HSPH1 (also known as heat shock 105kDa/110kDa protein 1, HSP105; HSP105A; HSP105B; NY-CO-25; the human HSPH1 gene maps to 13q12.3), Saccharomyces cerevisiae Sse1p and Sse2p, and a sea urchin sperm receptor. It belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family, and includes proteins believed to function generally as co-chaperones of HSP70 chaperones, acting as nucleotide exchange factors (NEFs), to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is also regulated by J-domain proteins. Length = 381

>gnl|CDD|240227 PTZ00009, PTZ00009, heat shock 70 kDa protein; Provisional

 Score = 47.9 bits (114), Expect = 6e-06
 Identities = 19/54 (35%), Positives = 35/54 (64%)

Query: 318 VLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIGGLLTSFVQPIEDVLSRSNI 371
            LS+   + + ++SL++G+D++  +SRARFE L G    + +QP+E VL  + +
Sbjct: 275 TLSSSTQATIEIDSLFEGIDYNVTISRARFEELCGDYFRNTLQPVEKVLKDAGM 328

Length = 653

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 47.4 bits (111), Expect = 7e-06
 Identities = 26/159 (16%), Positives = 61/159 (38%), Gaps = 5/159 (3%)

Query: 2   SRLISQAKNTIIKNKRALNTELTETDIETIVRETKVDITTNKDMIEYKISYQESSRVKAF 61
             L S + +  ++       +L  +            ++ + D         +   ++ +
Sbjct: 297 KLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLW 356

Query: 62  NPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGH 121
           +   + T            V  V +    D   + SG+ D  V++WD    + ++ L+GH
Sbjct: 357 D---LRTGKPLKTLEGHSNVLSVSF--SPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGH 411

Query: 122 GQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISL 160
              ++++ F P+   + +GS D ++R+W   T    +S 
Sbjct: 412 TSRVTSLDFSPDGKSLASGSSDNTIRLWDLKTSLKSVSF 450

Length = 466

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 41.5 bits (98), Expect = 1e-05
 Identities = 18/38 (47%), Positives = 22/38 (57%), Gaps = 2/38 (5%)

Query: 71  LKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWD 108
           LKTL GH   V  V +    D  YL SG+DD  +K+WD
Sbjct: 5   LKTLKGHTGPVTSVAFSP--DGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|223520 COG0443, DnaK, Molecular chaperone [Posttranslational modification, protein turnover, chaperones]

 Score = 47.0 bits (112), Expect = 1e-05
 Identities = 16/60 (26%), Positives = 32/60 (53%)

Query: 318 VLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIGGLLTSFVQPIEDVLSRSNITHDQIN 377
            LS+   +++ + S+   +D    ++RA+FE LI  LL   ++P+E  L  + +    I+
Sbjct: 252 ELSSATQTSINLPSIGGDIDLLKELTRAKFEELILDLLERTIEPVEQALKDAGLEKSDID 311

Length = 579

>gnl|CDD|212682 cd11732, HSP105-110_like_NBD, Nucleotide-binding domain of 105/110 kDa heat shock proteins including HSPA4, HYOU1, and similar proteins

 Score = 45.0 bits (106), Expect = 4e-05
 Identities = 23/80 (28%), Positives = 41/80 (51%)

Query: 246 KYRLDISDSHRSVAKLRAAAETCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIG 305
           KY++DI ++ ++  ++  AAE    VLS   ++   VES+ + +D    +SR   E L+ 
Sbjct: 248 KYKIDIRENPKAYNRILTAAEKLKKVLSANTNAPFSVESVMNDVDVSSQLSREELEELVK 307

Query: 306 GLLTSFVQPCMHVLSTLQSS 325
            LL    +P    L+  + S
Sbjct: 308 PLLERVTEPVTKALAQAKLS 327

This subfamily include the human proteins, HSPA4 (also known as 70-kDa heat shock protein 4, APG-2, HS24/P52, hsp70 RY, and HSPH2; the human HSPA4 gene maps to 5q31.1), HSPA4L (also known as 70-kDa heat shock protein 4-like, APG-1, HSPH3, and OSP94; the human HSPA4L gene maps to 4q28), and HSPH1 (also known as heat shock 105kDa/110kDa protein 1, HSP105; HSP105A; HSP105B; NY-CO-25; the human HSPH1 gene maps to 13q12.3), HYOU1 (also known as human hypoxia up-regulated 1, GRP170; HSP12A; ORP150; GRP-170; ORP-150; the human HYOU1 gene maps to11q23.1-q23.3), Saccharomyces cerevisiae Sse1p, Sse2p, and Lhs1p, and a sea urchin sperm receptor. It belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family, and includes proteins believed to function generally as co-chaperones of HSP70 chaperones, acting as nucleotide exchange factors (NEFs), to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is also regulated by J-domain proteins. Length = 377

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 44.7 bits (104), Expect = 5e-05
 Identities = 25/96 (26%), Positives = 53/96 (55%), Gaps = 4/96 (4%)

Query: 70  ILKTLYG-HEKGVNCVDYYHGGDKPYLISGAD-DRLVKIWDYQNKT-CVQTLEGHGQNIS 126
           ++K+L G H+  V+ +          L++ +  D  VK+WD       ++TLEGH ++++
Sbjct: 100 LIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVT 159

Query: 127 AVCFHPELPIVITGSE-DGSVRVWHSGTHRLEISLT 161
           ++ F P+  ++ +GS  DG++++W   T +   +L 
Sbjct: 160 SLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLA 195

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 2/39 (5%)

Query: 70  ILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWD 108
            ++TL GH   V  + +    D   L SG+ D  ++IWD
Sbjct: 253 CVQTLSGHTNSVTSLAWS--PDGKRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 41.2 bits (95), Expect = 7e-04
 Identities = 33/157 (21%), Positives = 63/157 (40%), Gaps = 13/157 (8%)

Query: 27  DIETIVRETKVDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDY 86
             E       + + +        +     S       + +  L    L GHE  +  + +
Sbjct: 18  KSELGPSLNSLSLLSLGSSESGILLLALLSDS----LVSLPDLSSLLLRGHEDSITSIAF 73

Query: 87  YHGGDKPYLISGADDRLVKIWDYQN-KTCVQTLEG-HGQNISAVCF-HPELPIVIT--GS 141
               D   L+SG+ D  +K+WD  N +  +++LEG H  ++S +    P+   ++    S
Sbjct: 74  --SPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSS 131

Query: 142 EDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNN 178
            DG+V++W   T    I    G     +++SL  S +
Sbjct: 132 LDGTVKLWDLSTPGKLIRTLEGHS--ESVTSLAFSPD 166

Length = 466

>gnl|CDD|215656 pfam00012, HSP70, Hsp70 protein

 Score = 41.1 bits (97), Expect = 8e-04
 Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 2/63 (3%)

Query: 318 VLSTLQSS-NVFVESLY-DGLDFHHNVSRARFESLIGGLLTSFVQPIEDVLSRSNITHDQ 375
            LS+ Q+  N+   +   DG D    ++RA+FE L   L    ++P+E  L  + ++  +
Sbjct: 266 ELSSNQTEINLPFITAMADGKDVSGTLTRAKFEELCADLFERTLEPVEKALKDAKLSKSE 325

Query: 376 INK 378
           I++
Sbjct: 326 IDE 328

Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region. Length = 598

>gnl|CDD|212673 cd10231, YegD_like, Escherichia coli YegD, a putative chaperone protein, and related proteins

 Score = 39.1 bits (92), Expect = 0.003
 Identities = 12/50 (24%), Positives = 25/50 (50%), Gaps = 1/50 (2%)

Query: 333 YDGLDFHHNVSRARFESLIGGLLTSFVQPIEDVLSRSNITHDQINK-FTT 381
           +  +     V+RA FE  I   L      +++ L+++ ++ D I++ F T
Sbjct: 326 FVEVGLEAPVTRAEFEGAIAPDLERIEAAVDEALAQAGVSPDAIDRVFLT 375

This bacterial subfamily includes the uncharacterized Escherichia coli YegD. It belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. YegD lacks the SBD. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Some family members are not chaperones but instead, function as NEFs for their Hsp70 partners, other family members function as both chaperones and NEFs. Length = 415

>gnl|CDD|212680 cd10238, HSPA14-like_NBD, Nucleotide-binding domain of human HSPA14 and similar proteins

 Score = 38.9 bits (91), Expect = 0.004
 Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 2/74 (2%)

Query: 1   KSRLISQAKNTIIKNKRALNTELTETDIETIVRETKVDITTNKDMIEYKISYQESSRVKA 60
           K   I  A NTI+KNK+ L    ++   +    E+   I       +Y+I  +E  + K 
Sbjct: 52  KQGRIRNAANTIVKNKQILGRSYSDPFKQKEKTESSCKIIEKDGEPKYEIFTEE--KTKH 109

Query: 61  FNPIQVATLILKTL 74
            +P +VA LI K +
Sbjct: 110 VSPKEVAKLIFKKM 123

Human HSPA14 (also known as 70-kDa heat shock protein 14, HSP70L1, HSP70-4; the gene encoding HSPA14 maps to 10p13), is ribosome-associated and belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). HSPA14 interacts with the J-protein MPP11 to form the mammalian ribosome-associated complex (mRAC). HSPA14 participates in a pathway along with Nijmegen breakage syndrome 1 (NBS1, also known as p85 or nibrin), heat shock transcription factor 4b (HSF4b), and HSPA4 (belonging to a different subfamily), that induces tumor migration, invasion, and transformation. HSPA14 is a potent T helper cell (Th1) polarizing adjuvant that contributes to antitumor immune responses. Length = 375

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	381
KOG0100|consensus	663		100.0
KOG0272|consensus	459		99.97
KOG0272|consensus	459		99.97
KOG0263|consensus	707		99.96
KOG0271|consensus	480		99.96
KOG0286|consensus	343		99.95
KOG0271|consensus	480		99.95
KOG0279|consensus	315		99.95
KOG0276|consensus	794		99.95
KOG0279|consensus	315		99.95
KOG0263|consensus	707		99.94
KOG0266|consensus	456		99.93
KOG0266|consensus	456		99.93
KOG0282|consensus	503		99.93
KOG0284|consensus	464		99.92
KOG0285|consensus	460		99.92
KOG0286|consensus	343		99.92
KOG0316|consensus	307		99.92
KOG0102|consensus	640		99.92
KOG0645|consensus	312		99.92
KOG0101|consensus	620		99.91
KOG0315|consensus	311		99.91
KOG0276|consensus	794		99.91
KOG0645|consensus	312		99.91
KOG0285|consensus	460		99.91
KOG0319|consensus	775		99.91
PTZ00421	493	coronin; Provisional	99.91
KOG0291|consensus	893		99.9
KOG0284|consensus	464		99.9
KOG0295|consensus	406		99.9
KOG0273|consensus	524		99.9
KOG0295|consensus	406		99.9
KOG0315|consensus	311		99.9
KOG0275|consensus	508		99.9
KOG0277|consensus	311		99.9
KOG0291|consensus	893		99.9
KOG0273|consensus	524		99.9
KOG0281|consensus	499		99.89
KOG0283|consensus	712		99.89
PTZ00420	568	coronin; Provisional	99.89
PTZ00420	568	coronin; Provisional	99.89
KOG0103|consensus	727		99.89
KOG0319|consensus	775		99.88
PTZ00421	493	coronin; Provisional	99.88
KOG0265|consensus	338		99.88
KOG0292|consensus	1202		99.87
KOG0292|consensus	1202		99.87
KOG0310|consensus	487		99.86
KOG0281|consensus	499		99.86
KOG0296|consensus	399		99.86
KOG0264|consensus	422		99.86
KOG0294|consensus	362		99.86
KOG1407|consensus	313		99.85
KOG0318|consensus	603		99.85
KOG0318|consensus	603		99.85
KOG0640|consensus	430		99.85
KOG0310|consensus	487		99.85
PLN00181	793	protein SPA1-RELATED; Provisional	99.84
KOG0293|consensus	519		99.84
KOG0973|consensus	942		99.84
KOG0308|consensus	735		99.84
KOG0277|consensus	311		99.84
KOG1332|consensus	299		99.83
KOG0274|consensus	537		99.83
KOG0313|consensus	423		99.83
KOG0267|consensus	825		99.83
KOG0308|consensus	735		99.83
PTZ00186	657	heat shock 70 kDa precursor protein; Provisional	99.83
PLN00181	793	protein SPA1-RELATED; Provisional	99.82
KOG0643|consensus	327		99.82
KOG4283|consensus	397		99.82
KOG0302|consensus	440		99.82
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.82
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.82
KOG0274|consensus	537		99.82
KOG0282|consensus	503		99.82
KOG0269|consensus	839		99.82
KOG0647|consensus	347		99.81
KOG0265|consensus	338		99.81
KOG0640|consensus	430		99.81
KOG0296|consensus	399		99.81
KOG0283|consensus	712		99.81
KOG0305|consensus	484		99.81
PTZ00009	653	heat shock 70 kDa protein; Provisional	99.8
KOG0289|consensus	506		99.8
KOG0316|consensus	307		99.8
KOG1446|consensus	311		99.8
KOG0300|consensus	481		99.8
KOG0313|consensus	423		99.8
KOG0278|consensus	334		99.8
KOG0264|consensus	422		99.79
KOG0973|consensus	942		99.79
KOG0293|consensus	519		99.79
KOG0288|consensus	459		99.78
KOG0289|consensus	506		99.78
KOG0306|consensus	888		99.78
KOG0269|consensus	839		99.78
KOG0275|consensus	508		99.78
KOG0646|consensus	476		99.77
KOG0306|consensus	888		99.77
KOG0267|consensus	825		99.77
KOG0301|consensus	745		99.77
KOG0294|consensus	362		99.77
KOG0303|consensus	472		99.76
KOG1407|consensus	313		99.75
PTZ00400	663	DnaK-type molecular chaperone; Provisional	99.75
PRK13410	668	molecular chaperone DnaK; Provisional	99.74
KOG0772|consensus	641		99.74
KOG1332|consensus	299		99.74
KOG0641|consensus	350		99.74
KOG0301|consensus	745		99.74
KOG0302|consensus	440		99.74
KOG0299|consensus	479		99.74
KOG0639|consensus	705		99.73
KOG0268|consensus	433		99.73
KOG0270|consensus	463		99.72
KOG0270|consensus	463		99.72
PRK13411	653	molecular chaperone DnaK; Provisional	99.72
KOG1034|consensus	385		99.72
KOG0303|consensus	472		99.72
KOG1009|consensus	434		99.72
PLN03184	673	chloroplast Hsp70; Provisional	99.72
KOG0299|consensus	479		99.71
KOG4378|consensus	673		99.71
KOG0278|consensus	334		99.7
KOG0639|consensus	705		99.7
KOG0647|consensus	347		99.69
KOG0643|consensus	327		99.69
KOG0772|consensus	641		99.69
PRK00290	627	dnaK molecular chaperone DnaK; Provisional	99.68
KOG0104|consensus	902		99.68
KOG4283|consensus	397		99.68
KOG1274|consensus	933		99.68
KOG1446|consensus	311		99.68
KOG0305|consensus	484		99.68
KOG0646|consensus	476		99.68
KOG1036|consensus	323		99.67
KOG1274|consensus	933		99.66
KOG4328|consensus	498		99.66
TIGR02350	595	prok_dnaK chaperone protein DnaK. Members of this	99.66
KOG0321|consensus	720		99.65
KOG1539|consensus	910		99.65
KOG0641|consensus	350		99.65
CHL00094	621	dnaK heat shock protein 70	99.64
KOG0288|consensus	459		99.64
COG0443	579	DnaK Molecular chaperone [Posttranslational modifi	99.64
KOG1034|consensus	385		99.63
KOG2106|consensus	626		99.63
KOG2096|consensus	420		99.63
KOG0300|consensus	481		99.62
KOG0268|consensus	433		99.62
KOG2048|consensus	691		99.62
KOG0642|consensus	577		99.62
KOG2055|consensus	514		99.61
TIGR01991	599	HscA Fe-S protein assembly chaperone HscA. The Hea	99.61
KOG1408|consensus	1080		99.59
PF00012	602	HSP70: Hsp70 protein; InterPro: IPR013126 Heat sho	99.58
KOG1408|consensus	1080		99.57
KOG1273|consensus	405		99.56
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.55
KOG1524|consensus	737		99.55
KOG0321|consensus	720		99.55
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.55
KOG1445|consensus	1012		99.54
KOG2445|consensus	361		99.54
PRK05183	616	hscA chaperone protein HscA; Provisional	99.54
KOG2096|consensus	420		99.54
KOG1273|consensus	405		99.53
KOG1036|consensus	323		99.53
KOG0322|consensus	323		99.52
KOG1188|consensus	376		99.52
KOG1445|consensus	1012		99.51
KOG2919|consensus	406		99.51
KOG1538|consensus	1081		99.51
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.49
KOG1523|consensus	361		99.49
KOG1007|consensus	370		99.49
KOG2919|consensus	406		99.48
KOG0771|consensus	398		99.46
KOG0649|consensus	325		99.46
KOG0307|consensus	1049		99.46
KOG1009|consensus	434		99.45
KOG0644|consensus	1113		99.44
KOG0642|consensus	577		99.43
KOG1063|consensus	764		99.43
KOG1063|consensus	764		99.42
KOG2394|consensus	636		99.42
KOG2110|consensus	391		99.42
KOG2106|consensus	626		99.41
KOG0307|consensus	1049		99.41
KOG1539|consensus	910		99.4
KOG2048|consensus	691		99.4
KOG2445|consensus	361		99.39
KOG0290|consensus	364		99.39
KOG0100|consensus	663		99.38
KOG2055|consensus	514		99.38
COG2319	466	FOG: WD40 repeat [General function prediction only	99.37
KOG2110|consensus	391		99.36
KOG1007|consensus	370		99.35
KOG4378|consensus	673		99.34
KOG1310|consensus	758		99.34
KOG1310|consensus	758		99.33
KOG4227|consensus	609		99.3
KOG0649|consensus	325		99.29
KOG1587|consensus	555		99.29
KOG0974|consensus	967		99.28
KOG2111|consensus	346		99.28
KOG3881|consensus	412		99.28
KOG2394|consensus	636		99.27
KOG4328|consensus	498		99.26
KOG2139|consensus	445		99.26
COG2319	466	FOG: WD40 repeat [General function prediction only	99.26
KOG0650|consensus	733		99.25
KOG4227|consensus	609		99.25
KOG1524|consensus	737		99.25
KOG1188|consensus	376		99.22
PRK01742	429	tolB translocation protein TolB; Provisional	99.21
KOG0650|consensus	733		99.2
KOG0644|consensus	1113		99.19
KOG0974|consensus	967		99.19
KOG2139|consensus	445		99.18
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.18
PRK01742	429	tolB translocation protein TolB; Provisional	99.14
KOG2111|consensus	346		99.14
PRK11028	330	6-phosphogluconolactonase; Provisional	99.12
KOG0771|consensus	398		99.1
KOG1523|consensus	361		99.09
KOG1538|consensus	1081		99.09
KOG0290|consensus	364		99.08
KOG1272|consensus	545		99.08
KOG1272|consensus	545		99.08
KOG1587|consensus	555		99.08
KOG1963|consensus	792		99.06
PRK11028	330	6-phosphogluconolactonase; Provisional	99.05
PRK05137	435	tolB translocation protein TolB; Provisional	99.04
KOG1517|consensus	1387		99.03
KOG2321|consensus	703		99.03
PRK01433	595	hscA chaperone protein HscA; Provisional	99.03
KOG1517|consensus	1387		99.02
PRK03629	429	tolB translocation protein TolB; Provisional	99.0
KOG0322|consensus	323		98.98
PRK05137	435	tolB translocation protein TolB; Provisional	98.96
PRK02889	427	tolB translocation protein TolB; Provisional	98.96
KOG4547|consensus	541		98.96
KOG1240|consensus	1431		98.96
PRK04922	433	tolB translocation protein TolB; Provisional	98.96
PRK02889	427	tolB translocation protein TolB; Provisional	98.93
COG4946	668	Uncharacterized protein related to the periplasmic	98.92
KOG2321|consensus	703		98.92
PRK04922	433	tolB translocation protein TolB; Provisional	98.91
KOG3881|consensus	412		98.91
PRK03629	429	tolB translocation protein TolB; Provisional	98.91
KOG0101|consensus	620		98.89
KOG1963|consensus	792		98.89
KOG1240|consensus	1431		98.88
KOG0102|consensus	640		98.87
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	98.87
KOG4497|consensus	447		98.86
KOG0280|consensus	339		98.84
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	98.84
KOG0104|consensus	902		98.82
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.8
PRK04792	448	tolB translocation protein TolB; Provisional	98.75
KOG0280|consensus	339		98.74
KOG4190|consensus	1034		98.72
PRK00178	430	tolB translocation protein TolB; Provisional	98.69
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	98.69
PTZ00009	653	heat shock 70 kDa protein; Provisional	98.68
KOG3914|consensus	390		98.68
KOG1334|consensus	559		98.67
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.66
PTZ00186	657	heat shock 70 kDa precursor protein; Provisional	98.65
KOG0103|consensus	727		98.63
KOG4547|consensus	541		98.6
PRK11678	450	putative chaperone; Provisional	98.58
KOG1409|consensus	404		98.58
PRK00178	430	tolB translocation protein TolB; Provisional	98.57
KOG1409|consensus	404		98.56
KOG2315|consensus	566		98.55
PRK04792	448	tolB translocation protein TolB; Provisional	98.55
KOG1275|consensus	1118		98.54
KOG1354|consensus	433		98.54
KOG4497|consensus	447		98.53
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.52
KOG1334|consensus	559		98.51
PRK01029	428	tolB translocation protein TolB; Provisional	98.51
KOG2041|consensus	1189		98.5
KOG0309|consensus	1081		98.48
PLN03184	673	chloroplast Hsp70; Provisional	98.48
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.46
PRK13410	668	molecular chaperone DnaK; Provisional	98.46
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	98.45
PTZ00400	663	DnaK-type molecular chaperone; Provisional	98.43
KOG3914|consensus	390		98.42
PRK13411	653	molecular chaperone DnaK; Provisional	98.42
KOG4714|consensus	319		98.39
KOG1064|consensus	2439		98.38
COG0443	579	DnaK Molecular chaperone [Posttranslational modifi	98.37
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	98.37
KOG4532|consensus	344		98.37
PRK00290	627	dnaK molecular chaperone DnaK; Provisional	98.36
PRK01029	428	tolB translocation protein TolB; Provisional	98.36
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	98.35
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.33
KOG4714|consensus	319		98.33
TIGR02350	595	prok_dnaK chaperone protein DnaK. Members of this	98.32
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	98.3
TIGR01991	599	HscA Fe-S protein assembly chaperone HscA. The Hea	98.29
KOG4190|consensus	1034		98.29
CHL00094	621	dnaK heat shock protein 70	98.28
PRK04043	419	tolB translocation protein TolB; Provisional	98.24
KOG1912|consensus	1062		98.2
KOG2695|consensus	425		98.12
KOG0882|consensus	558		98.11
KOG2695|consensus	425		98.11
KOG4532|consensus	344		98.11
KOG1354|consensus	433		98.1
KOG2315|consensus	566		98.07
KOG2066|consensus	846		98.06
PRK05183	616	hscA chaperone protein HscA; Provisional	98.04
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.04
KOG0309|consensus	1081		98.04
KOG1064|consensus	2439		98.02
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.02
COG4946	668	Uncharacterized protein related to the periplasmic	98.0
PF00012	602	HSP70: Hsp70 protein; InterPro: IPR013126 Heat sho	97.99
PRK04043	419	tolB translocation protein TolB; Provisional	97.98
KOG1275|consensus	1118		97.97
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	97.96
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	97.95
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	97.94
KOG2041|consensus	1189		97.86
KOG4649|consensus	354		97.81
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	97.81
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	97.81
PRK11678	450	putative chaperone; Provisional	97.8
KOG1912|consensus	1062		97.73
KOG2066|consensus	846		97.7
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.69
KOG1645|consensus	463		97.67
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	97.64
KOG2314|consensus	698		97.62
KOG4640|consensus	665		97.58
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	97.57
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	97.52
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	97.5
KOG1832|consensus	1516		97.48
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	97.48
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.39
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	97.39
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.38
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	97.36
KOG0882|consensus	558		97.32
PRK01433	595	hscA chaperone protein HscA; Provisional	97.28
KOG1832|consensus	1516		97.28
KOG2114|consensus	933		97.27
KOG4640|consensus	665		97.24
KOG3621|consensus	726		97.15
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	97.11
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	97.11
KOG2114|consensus	933		97.04
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	97.02
KOG4649|consensus	354		97.0
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	96.99
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	96.98
KOG2314|consensus	698		96.93
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	96.91
PRK02888	635	nitrous-oxide reductase; Validated	96.89
KOG3621|consensus	726		96.86
PRK13928	336	rod shape-determining protein Mbl; Provisional	96.85
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	96.81
KOG1645|consensus	463		96.81
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	96.74
KOG2444|consensus	238		96.73
KOG1920|consensus	1265		96.72
KOG2079|consensus	1206		96.64
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	96.63
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	96.63
KOG3617|consensus	1416		96.58
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.42
KOG1920|consensus	1265		96.39
KOG3617|consensus	1416		96.37
KOG2395|consensus	644		96.33
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	96.27
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	96.2
PRK13929	335	rod-share determining protein MreBH; Provisional	96.18
KOG2079|consensus	1206		96.18
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.0
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	95.99
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	95.87
KOG1008|consensus	783		95.86
COG3391	381	Uncharacterized conserved protein [Function unknow	95.86
TIGR01174	371	ftsA cell division protein FtsA. This bacterial ce	95.85
PRK13927	334	rod shape-determining protein MreB; Provisional	95.85
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	95.72
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	95.62
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	95.34
PRK02888	635	nitrous-oxide reductase; Validated	95.26
COG3391	381	Uncharacterized conserved protein [Function unknow	94.97
PRK13930	335	rod shape-determining protein MreB; Provisional	94.79
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	94.56
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	94.27
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	94.17
KOG4499|consensus	310		94.15
PRK13928	336	rod shape-determining protein Mbl; Provisional	94.11
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	94.06
KOG2444|consensus	238		94.05
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	93.97
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	93.94
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	93.84
KOG2395|consensus	644		93.74
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	93.61
PHA02713	557	hypothetical protein; Provisional	93.57
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	93.56
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	93.52
PRK13616	591	lipoprotein LpqB; Provisional	93.46
KOG1008|consensus	783		93.35
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	93.1
PRK13616	591	lipoprotein LpqB; Provisional	92.77
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	92.58
KOG4441|consensus	571		92.43
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	92.38
KOG4441|consensus	571		92.24
KOG3630|consensus	1405		92.24
TIGR00904	333	mreB cell shape determining protein, MreB/Mrl fami	91.95
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	91.73
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	91.69
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	91.59
KOG2280|consensus	829		91.51
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	91.5
TIGR01174	371	ftsA cell division protein FtsA. This bacterial ce	91.43
PHA02713	557	hypothetical protein; Provisional	91.01
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	90.92
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	90.86
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	90.76
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	90.76
COG5167	776	VID27 Protein involved in vacuole import and degra	90.71
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	90.59
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	90.59
PRK09472	420	ftsA cell division protein FtsA; Reviewed	90.4
PRK13927	334	rod shape-determining protein MreB; Provisional	90.19
KOG3630|consensus	1405		90.16
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	89.8
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	89.68
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	89.38
KOG4460|consensus	741		89.17
PRK13929	335	rod-share determining protein MreBH; Provisional	88.96
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	88.32
COG1520	370	FOG: WD40-like repeat [Function unknown]	88.25
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	87.17
PHA03098	534	kelch-like protein; Provisional	86.56
KOG1916|consensus	1283		86.28
PHA03098	534	kelch-like protein; Provisional	85.99
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	85.63
KOG2247|consensus	615		85.51
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	85.18
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	84.75
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	84.25
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	84.22
PF14727	418	PHTB1_N: PTHB1 N-terminus	84.22
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	83.47
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	83.1
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	82.86
PRK15080	267	ethanolamine utilization protein EutJ; Provisional	82.77
PRK13930	335	rod shape-determining protein MreB; Provisional	82.34
PF14269	299	Arylsulfotran_2: Arylsulfotransferase (ASST)	82.18
PHA02790	480	Kelch-like protein; Provisional	82.1
PF01011	38	PQQ: PQQ enzyme repeat family.; InterPro: IPR00237	82.04
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	82.04
COG1520	370	FOG: WD40-like repeat [Function unknown]	81.61
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	81.5
KOG1916|consensus	1283		80.96
PRK10115	686	protease 2; Provisional	80.89
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	80.65
smart00564	33	PQQ beta-propeller repeat. Beta-propeller repeat o	80.28
PHA02790	480	Kelch-like protein; Provisional	80.23
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	80.07

>KOG0100|consensus

Probab=100.00  E-value=7.3e-34  Score=241.64  Aligned_cols=306  Identities=18%  Similarity=0.300  Sum_probs=217.5

Q ss_pred             CchhhhHHHhhhhhcccccccCCChhhHHHHhhhcceeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeecc----
Q psy4650           1 KSRLISQAKNTIIKNKRALNTELTETDIETIVRETKVDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYG----   76 (381)
Q Consensus         1 ~~~~~~~~~~t~~~~k~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~----   76 (381)
                      |+|+.+||.||||..||||||.|+++.+|+.++++||.++.....+.+-+..+ +|.-++|.|++++.+++..++.    
T Consensus        88 KNQ~~~NPenTiFD~KRLIGr~~~d~~vq~Dik~~Pfkvv~k~~kp~i~v~v~-~g~~K~FtPeEiSaMiL~KMKe~AEa  166 (663)
T KOG0100|consen   88 KNQLTSNPENTIFDAKRLIGRKFNDKSVQKDIKFLPFKVVNKDGKPYIQVKVG-GGETKVFTPEEISAMILTKMKETAEA  166 (663)
T ss_pred             hcccccCcccceechHHHhCcccCChhhhhhhhcCceEEEcCCCCccEEEEcc-CCcccccCHHHHHHHHHHHHHHHHHH
Confidence            68999999999999999999999999999999999999998876565555443 4567899999888887766553    


Q ss_pred             ---c--cc-cEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEEEeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEe
Q psy4650          77 ---H--EK-GVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWH  150 (381)
Q Consensus        77 ---h--~~-~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd  150 (381)
                         +  +. .|+.-++..+.++  -++- .-|+|     .....++.+...++.  +++|--+..     .....|.+||
T Consensus       167 yLGkkv~~AVvTvPAYFNDAQr--QATK-DAGtI-----AgLnV~RIiNePTaA--AIAYGLDKk-----~gEknilVfD  231 (663)
T KOG0100|consen  167 YLGKKVTHAVVTVPAYFNDAQR--QATK-DAGTI-----AGLNVVRIINEPTAA--AIAYGLDKK-----DGEKNILVFD  231 (663)
T ss_pred             HhCCcccceEEecchhcchHHH--hhhc-cccee-----ccceEEEeecCccHH--HHHhccccc-----CCcceEEEEE
Confidence               1  12 2333344443332  1111 11111     122334444444332  222222111     2256799999


Q ss_pred             CCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCceEEEecCCCEEEEEecCceeecccccCCccccc
Q psy4650         151 SGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKVGREEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFEN  230 (381)
Q Consensus       151 ~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (381)
                      +..|+...++-.-...|..+......                                          +.+++-.     
T Consensus       232 LGGGTFDVSlLtIdnGVFeVlaTnGD------------------------------------------ThLGGED-----  264 (663)
T KOG0100|consen  232 LGGGTFDVSLLTIDNGVFEVLATNGD------------------------------------------THLGGED-----  264 (663)
T ss_pred             cCCceEEEEEEEEcCceEEEEecCCC------------------------------------------cccCccc-----
Confidence            99998776654333333322211111                                          1111111     


Q ss_pred             cCCceEEeeehHHHHHhccCCCcChhHHHHHHHHHhhhhhhccccceeeEEEecccCCcccccccChHHHHHHHHHHhhh
Q psy4650         231 ITAGVVLTLSVHVTIKYRLDISDSHRSVAKLRAAAETCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIGGLLTS  310 (381)
Q Consensus       231 ~~dg~~l~~~~~d~~~~~~d~~~~~~~~~~l~~~~e~ak~~lS~~~~~~i~~~~l~~g~~~~~~itr~~fe~l~~~l~~~  310 (381)
                      ++..-.-++.--..+++..|++.+.+++++|+.++|+||+.||++.+..+.++++++|.||+-++||++||+|+++||++
T Consensus       265 FD~rvm~~fiklykkK~gkDv~kdnkA~~KLrRe~EkAKRaLSsqhq~riEIeS~fdG~DfSEtLtRAkFEElNmDLFr~  344 (663)
T KOG0100|consen  265 FDQRVMEYFIKLYKKKHGKDVRKDNKAVQKLRREVEKAKRALSSQHQVRIEIESLFDGVDFSETLTRAKFEELNMDLFRK  344 (663)
T ss_pred             hHHHHHHHHHHHHhhhcCCccchhhHHHHHHHHHHHHHHhhhccccceEEeeeeccccccccchhhhhHHHHhhhHHHHH
Confidence            11111112333455677889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhHhhhccccceeeEeeccccCcceEEeecHHHHHHHHHHHHH-----HhHHHHHHHHHhCCCC
Q psy4650         311 FVQPCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIGGLLT-----SFVQPIEDVLSRSNIT  372 (381)
Q Consensus       311 ~~~~~~~~Ls~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~-----~~~~~~~~~l~~~~~~  372 (381)
                      ++.|++++|.+   +.+...++++..++||++|+|++++|+.++|+     |=++|-|.+.--|.+.
T Consensus       345 TlkPv~kvl~D---s~lkKsdideiVLVGGsTrIPKvQqllk~fF~GKepskGinPdEAVAYGAAVQ  408 (663)
T KOG0100|consen  345 TLKPVQKVLED---SDLKKSDIDEIVLVGGSTRIPKVQQLLKDFFNGKEPSKGINPDEAVAYGAAVQ  408 (663)
T ss_pred             hhHHHHHHHhh---cCcccccCceEEEecCcccChhHHHHHHHHhCCCCccCCCChHHHHHhhhhhh
Confidence            99999999998   77888889999999999999999999999995     6778888876555443

>KOG0272|consensus

Probab=99.97  E-value=5.8e-30  Score=217.78  Aligned_cols=196  Identities=17%  Similarity=0.214  Sum_probs=164.0

Q ss_pred             eeeeecCC-CceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEE
Q psy4650          37 VDITTNKD-MIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCV  115 (381)
Q Consensus        37 ~~i~~~~~-~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~  115 (381)
                      .++.+.|. ...-+++|+.||++++|+..+  ..++..+.||...|..++|+|+|.  +|+|++.|.+-++||+.++..+
T Consensus       221 ~~~~fhP~~~~~~lat~s~Dgtvklw~~~~--e~~l~~l~gH~~RVs~VafHPsG~--~L~TasfD~tWRlWD~~tk~El  296 (459)
T KOG0272|consen  221 GAAVFHPVDSDLNLATASADGTVKLWKLSQ--ETPLQDLEGHLARVSRVAFHPSGK--FLGTASFDSTWRLWDLETKSEL  296 (459)
T ss_pred             eeEEEccCCCccceeeeccCCceeeeccCC--CcchhhhhcchhhheeeeecCCCc--eeeecccccchhhcccccchhh
Confidence            36677776 577899999999999999974  467889999999999999999887  9999999999999999999988


Q ss_pred             EEeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCC
Q psy4650         116 QTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKVGRE  195 (381)
Q Consensus       116 ~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~~~~  195 (381)
                      ....||..+|.+++|+|+|.++++||.|..-+|||+++|.++..+.+|...|.+|.|+|+|..+|+|+.|++++|     
T Consensus       297 L~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kV-----  371 (459)
T KOG0272|consen  297 LLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKV-----  371 (459)
T ss_pred             HhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEE-----
Confidence            889999999999999999999999999999999999999999999999999999999999999999999999999     


Q ss_pred             CceEEEecCCCEEEEEecCceeecccccCCccccccC-CceEEeeehHHHHHhccCCC
Q psy4650         196 EPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENIT-AGVVLTLSVHVTIKYRLDIS  252 (381)
Q Consensus       196 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-dg~~l~~~~~d~~~~~~d~~  252 (381)
                           ||.+....++.+..+.....      .+.|+| .|.+|++++.|....+|...
T Consensus       372 -----WDLR~r~~ly~ipAH~nlVS------~Vk~~p~~g~fL~TasyD~t~kiWs~~  418 (459)
T KOG0272|consen  372 -----WDLRMRSELYTIPAHSNLVS------QVKYSPQEGYFLVTASYDNTVKIWSTR  418 (459)
T ss_pred             -----eeecccccceecccccchhh------heEecccCCeEEEEcccCcceeeecCC
Confidence                 55544444443332221110      023444 56666677666666666544

>KOG0272|consensus

Probab=99.97  E-value=5.1e-30  Score=218.14  Aligned_cols=203  Identities=20%  Similarity=0.170  Sum_probs=178.2

Q ss_pred             ceeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEE
Q psy4650          36 KVDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCV  115 (381)
Q Consensus        36 ~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~  115 (381)
                      |...+.....+..+++|+-+|.+++|+..+.  ..+.+++||++.|.++.|+|..+...++||+.||++++|++.+..++
T Consensus       177 Pis~~~fS~ds~~laT~swsG~~kvW~~~~~--~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l  254 (459)
T KOG0272|consen  177 PISGCSFSRDSKHLATGSWSGLVKVWSVPQC--NLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPL  254 (459)
T ss_pred             cceeeEeecCCCeEEEeecCCceeEeecCCc--ceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcch
Confidence            4444444444779999999999999998753  67889999999999999999843347999999999999999999999


Q ss_pred             EEeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCC
Q psy4650         116 QTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKVGRE  195 (381)
Q Consensus       116 ~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~~~~  195 (381)
                      ..+.+|...|..++|||+|.+|++++.|.+-++||++++..+.-..+|+..|.+++|+|+|.++++|+.|..-++     
T Consensus       255 ~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~Rv-----  329 (459)
T KOG0272|consen  255 QDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRV-----  329 (459)
T ss_pred             hhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhhe-----
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999999     


Q ss_pred             CceEEEecCCCEEEEEecCceeecccccCCccccccCCceEEeeehHHHHHhccCCCcChh
Q psy4650         196 EPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSVHVTIKYRLDISDSHR  256 (381)
Q Consensus       196 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~d~~~~~~d~~~~~~  256 (381)
                           ||.++|..+--+..+  ...+.+    ++|+|+|..+++++.|+...+||++....
T Consensus       330 -----WDlRtgr~im~L~gH--~k~I~~----V~fsPNGy~lATgs~Dnt~kVWDLR~r~~  379 (459)
T KOG0272|consen  330 -----WDLRTGRCIMFLAGH--IKEILS----VAFSPNGYHLATGSSDNTCKVWDLRMRSE  379 (459)
T ss_pred             -----eecccCcEEEEeccc--ccceee----EeECCCceEEeecCCCCcEEEeeeccccc
Confidence                 899988877665542  222222    57899999999999999999999987654

>KOG0263|consensus

Probab=99.96  E-value=1.1e-29  Score=231.85  Aligned_cols=196  Identities=20%  Similarity=0.267  Sum_probs=175.1

Q ss_pred             eeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEE
Q psy4650          37 VDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQ  116 (381)
Q Consensus        37 ~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~  116 (381)
                      |...+.|+ .++|++++.|+++++|.+..  ...+..++||..+|+++.|+|.|-  ++||||.|++.++|......+++
T Consensus       455 yg~sFsPd-~rfLlScSED~svRLWsl~t--~s~~V~y~GH~~PVwdV~F~P~Gy--YFatas~D~tArLWs~d~~~PlR  529 (707)
T KOG0263|consen  455 YGCSFSPD-RRFLLSCSEDSSVRLWSLDT--WSCLVIYKGHLAPVWDVQFAPRGY--YFATASHDQTARLWSTDHNKPLR  529 (707)
T ss_pred             eeeeeccc-ccceeeccCCcceeeeeccc--ceeEEEecCCCcceeeEEecCCce--EEEecCCCceeeeeecccCCchh
Confidence            45566666 66999999999999999985  445567789999999999999887  89999999999999999999999


Q ss_pred             EeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCC
Q psy4650         117 TLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKVGREE  196 (381)
Q Consensus       117 ~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~~~~~  196 (381)
                      .+.||-+.|.|+.|||+..++++||.|.+||+||+.+|..++.+.+|.++|.+++|+|+|++|++|+.||.|.+      
T Consensus       530 ifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~i------  603 (707)
T KOG0263|consen  530 IFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKI------  603 (707)
T ss_pred             hhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEE------
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999      


Q ss_pred             ceEEEecCCCEEEEEecCceeecccccCCccccccCCceEEeeehHHHHHhccCCCc
Q psy4650         197 PAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSVHVTIKYRLDISD  253 (381)
Q Consensus       197 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~d~~~~~~d~~~  253 (381)
                          ||..++.++-....+  ...+.    .+.|+.||.+|++++.|..+..||+..
T Consensus       604 ----WDl~~~~~v~~l~~H--t~ti~----SlsFS~dg~vLasgg~DnsV~lWD~~~  650 (707)
T KOG0263|consen  604 ----WDLANGSLVKQLKGH--TGTIY----SLSFSRDGNVLASGGADNSVRLWDLTK  650 (707)
T ss_pred             ----EEcCCCcchhhhhcc--cCcee----EEEEecCCCEEEecCCCCeEEEEEchh
Confidence                888888877655544  22222    256889999999999999999999854

>KOG0271|consensus

Probab=99.96  E-value=8.9e-29  Score=208.19  Aligned_cols=237  Identities=17%  Similarity=0.187  Sum_probs=184.3

Q ss_pred             eeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeE-E
Q psy4650          37 VDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTC-V  115 (381)
Q Consensus        37 ~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~-~  115 (381)
                      ..+.+.|+ +..+++|+.|.++++||+.+  ..++++.+||...|.|++|+|||.  .||+|+.||+|++||.++|++ .
T Consensus       119 l~~~fsp~-g~~l~tGsGD~TvR~WD~~T--eTp~~t~KgH~~WVlcvawsPDgk--~iASG~~dg~I~lwdpktg~~~g  193 (480)
T KOG0271|consen  119 LSVQFSPT-GSRLVTGSGDTTVRLWDLDT--ETPLFTCKGHKNWVLCVAWSPDGK--KIASGSKDGSIRLWDPKTGQQIG  193 (480)
T ss_pred             EEEEecCC-CceEEecCCCceEEeeccCC--CCcceeecCCccEEEEEEECCCcc--hhhccccCCeEEEecCCCCCccc
Confidence            45666774 67999999999999999974  556789999999999999999998  799999999999999999875 4


Q ss_pred             EEeccCCCCEEEEEEec-----CCCEEEEEeCCCCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCCCeEEE
Q psy4650         116 QTLEGHGQNISAVCFHP-----ELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLL  190 (381)
Q Consensus       116 ~~~~~~~~~v~~~~~~p-----~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i  190 (381)
                      ..+.+|..+|++++|.|     ..+++++++.||.++|||+..++++..+.+|...|+|+.|-.+| ++.+|+.|++|++
T Consensus       194 ~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~g-liySgS~DrtIkv  272 (480)
T KOG0271|consen  194 RALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEG-LIYSGSQDRTIKV  272 (480)
T ss_pred             ccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCc-eEEecCCCceEEE
Confidence            67899999999999987     45589999999999999999999999999999999999997554 8999999999999


Q ss_pred             EecCCCceEEEecCCCEEEEEecCceeecccccCCc-----cccccC-------------------------CceEEeee
Q psy4650         191 KVGREEPAVSMDVNGCKIIWARHSEVQQANLKTMPE-----VFENIT-------------------------AGVVLTLS  240 (381)
Q Consensus       191 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~-------------------------dg~~l~~~  240 (381)
                                |+...|+++-.+..+.+-.+-.+..-     ..+|.|                         .|..++++
T Consensus       273 ----------w~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSg  342 (480)
T KOG0271|consen  273 ----------WRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSG  342 (480)
T ss_pred             ----------EEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEe
Confidence                      55544444433333332222211110     012222                         34679999


Q ss_pred             hHHHHHhccCCCcChhHHHHHHHHHhhhhhh---------ccccceeeEEEecccCCc
Q psy4650         241 VHVTIKYRLDISDSHRSVAKLRAAAETCMHV---------LSTLQSSNVFVESLYDGL  289 (381)
Q Consensus       241 ~~d~~~~~~d~~~~~~~~~~l~~~~e~ak~~---------lS~~~~~~i~~~~l~~g~  289 (381)
                      ++|...+.|+...+.+++.++..+..-+..+         .|++-..++.+++.-.|+
T Consensus       343 sDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk  400 (480)
T KOG0271|consen  343 SDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGK  400 (480)
T ss_pred             cCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcc
Confidence            9999999999999988888887776544333         344445556666655554

>KOG0286|consensus

Probab=99.95  E-value=2.7e-27  Score=192.75  Aligned_cols=222  Identities=13%  Similarity=0.196  Sum_probs=187.1

Q ss_pred             ccccccCCChhhHHHHhhhcceeee--ecCCCceEEEEEecCCeEEEecCCC----ccceeeEeeccccccEEEEEeeeC
Q psy4650          16 KRALNTELTETDIETIVRETKVDIT--TNKDMIEYKISYQESSRVKAFNPIQ----VATLILKTLYGHEKGVNCVDYYHG   89 (381)
Q Consensus        16 k~~~~~~~~~~~~~~~~~~~~~~i~--~~~~~~~~~~s~~~d~~v~i~~~~~----~~~~~~~~l~~h~~~v~~~~~~~~   89 (381)
                      |-++...|+..+++.++-....-++  ..| .+.+++.|+-|+...||++..    ......+.+.||++.+.|+.|-++
T Consensus        78 klIvWDs~TtnK~haipl~s~WVMtCA~sP-Sg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD  156 (343)
T KOG0286|consen   78 KLIVWDSFTTNKVHAIPLPSSWVMTCAYSP-SGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDD  156 (343)
T ss_pred             eEEEEEcccccceeEEecCceeEEEEEECC-CCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCC
Confidence            6677788888777666655444333  344 477999999999999999863    223566789999999999999886


Q ss_pred             CCccEEEEEcCCCeEEEEECCCCeEEEEeccCCCCEEEEEEec-CCCEEEEEeCCCCEEEEeCCCCeeeEEEecCCcceE
Q psy4650          90 GDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHP-ELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVW  168 (381)
Q Consensus        90 ~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~p-~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~  168 (381)
                      +   .|+++|.|.+.-+||+++++.+..|.+|.+.|.+++++| +++.+++|+.|+..++||++.+..++++.+|...|+
T Consensus       157 ~---~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDIN  233 (343)
T KOG0286|consen  157 N---HILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDIN  233 (343)
T ss_pred             C---ceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccc
Confidence            5   499999999999999999999999999999999999999 889999999999999999999999999999999999


Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEecCCCceEEEecCCCEEEEEecCceeecccccCCccccccCCceEEeeehHHHHHhc
Q psy4650         169 TISSLKGSNNVAIGYDEGSVLLKVGREEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSVHVTIKYR  248 (381)
Q Consensus       169 ~v~~~~~~~~l~~~~~dg~v~i~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~d~~~~~  248 (381)
                      +|+|+|+|.-+++|++|++.++          ||.+....+.....+....   ++.. ++|+..|+.|..+..|...+.
T Consensus       234 sv~ffP~G~afatGSDD~tcRl----------yDlRaD~~~a~ys~~~~~~---gitS-v~FS~SGRlLfagy~d~~c~v  299 (343)
T KOG0286|consen  234 SVRFFPSGDAFATGSDDATCRL----------YDLRADQELAVYSHDSIIC---GITS-VAFSKSGRLLFAGYDDFTCNV  299 (343)
T ss_pred             eEEEccCCCeeeecCCCceeEE----------EeecCCcEEeeeccCcccC---Ccee-EEEcccccEEEeeecCCceeE
Confidence            9999999999999999999999          8888777665555443222   2222 578899999999999999999


Q ss_pred             cCCCcCh
Q psy4650         249 LDISDSH  255 (381)
Q Consensus       249 ~d~~~~~  255 (381)
                      ||.-...
T Consensus       300 WDtlk~e  306 (343)
T KOG0286|consen  300 WDTLKGE  306 (343)
T ss_pred             eeccccc
Confidence            9986543

>KOG0271|consensus

Probab=99.95  E-value=3.9e-27  Score=198.36  Aligned_cols=137  Identities=23%  Similarity=0.335  Sum_probs=113.3

Q ss_pred             hcceeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeC---CCccEEEEEcCCCeEEEEECC
Q psy4650          34 ETKVDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHG---GDKPYLISGADDRLVKIWDYQ  110 (381)
Q Consensus        34 ~~~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~---~~~~~l~s~~~d~~v~vwd~~  110 (381)
                      +....+...|+ +..+++|+.||+|++|||+. ....-..|.||...|++++|.|-   ...++|+++|.||+|+|||+.
T Consensus       158 ~WVlcvawsPD-gk~iASG~~dg~I~lwdpkt-g~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~  235 (480)
T KOG0271|consen  158 NWVLCVAWSPD-GKKIASGSKDGSIRLWDPKT-GQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTK  235 (480)
T ss_pred             cEEEEEEECCC-cchhhccccCCeEEEecCCC-CCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEcc
Confidence            44457778888 66999999999999999976 44566789999999999999872   223489999999999999999


Q ss_pred             CCeEEEEeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEecCCcceEEEEEc
Q psy4650         111 NKTCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSL  173 (381)
Q Consensus       111 ~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~  173 (381)
                      .+.++..+.+|+.+|+|+.|--+ .++++|+.|++|++|+...|.+...+.+|...|+.++.+
T Consensus       236 ~~~~~~~lsgHT~~VTCvrwGG~-gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lals  297 (480)
T KOG0271|consen  236 LGTCVRTLSGHTASVTCVRWGGE-GLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALS  297 (480)
T ss_pred             CceEEEEeccCccceEEEEEcCC-ceEEecCCCceEEEEEccchhHHHhhcccchheeeeecc
Confidence            99999999999999999999543 389999999999999988877776666665555544433

>KOG0279|consensus

Probab=99.95  E-value=6.9e-27  Score=189.27  Aligned_cols=209  Identities=18%  Similarity=0.232  Sum_probs=166.0

Q ss_pred             eeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEE
Q psy4650          37 VDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQ  116 (381)
Q Consensus        37 ~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~  116 (381)
                      .++...++ +.+.++++.|+++++||+..  ....+.+.||...|.+++|+|+..  .++|||.|.++++|+..... ..
T Consensus        67 ~dv~~s~d-g~~alS~swD~~lrlWDl~~--g~~t~~f~GH~~dVlsva~s~dn~--qivSGSrDkTiklwnt~g~c-k~  140 (315)
T KOG0279|consen   67 SDVVLSSD-GNFALSASWDGTLRLWDLAT--GESTRRFVGHTKDVLSVAFSTDNR--QIVSGSRDKTIKLWNTLGVC-KY  140 (315)
T ss_pred             cceEEccC-CceEEeccccceEEEEEecC--CcEEEEEEecCCceEEEEecCCCc--eeecCCCcceeeeeeecccE-EE
Confidence            35555555 66999999999999999975  356678899999999999999776  79999999999999987554 44


Q ss_pred             EeccC--CCCEEEEEEecC--CCEEEEEeCCCCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCCCeEEEEe
Q psy4650         117 TLEGH--GQNISAVCFHPE--LPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKV  192 (381)
Q Consensus       117 ~~~~~--~~~v~~~~~~p~--~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~  192 (381)
                      ++..+  .+.|.|+.|+|.  .++++++++|++|++||+++-+....+.+|++.++.+.++|+|...++|+.||.+.+|+
T Consensus       141 t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~Lwd  220 (315)
T KOG0279|consen  141 TIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWD  220 (315)
T ss_pred             EEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEE
Confidence            44333  789999999998  67999999999999999999999999999999999999999999999999999999987


Q ss_pred             cCC------------------------------CceEEEecCCCEEEEEecCceeeccccc---CCccccccCCceEEee
Q psy4650         193 GRE------------------------------EPAVSMDVNGCKIIWARHSEVQQANLKT---MPEVFENITAGVVLTL  239 (381)
Q Consensus       193 ~~~------------------------------~~~~~~d~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~dg~~l~~  239 (381)
                      -++                              ..+..||..++..+..+..+........   ....++|++||+.|..
T Consensus       221 L~~~k~lysl~a~~~v~sl~fspnrywL~~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~  300 (315)
T KOG0279|consen  221 LNEGKNLYSLEAFDIVNSLCFSPNRYWLCAATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFA  300 (315)
T ss_pred             ccCCceeEeccCCCeEeeEEecCCceeEeeccCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEe
Confidence            222                              3344555555555544433322221111   1112789999999999


Q ss_pred             ehHHHHHhccCC
Q psy4650         240 SVHVTIKYRLDI  251 (381)
Q Consensus       240 ~~~d~~~~~~d~  251 (381)
                      +..++.+..|.+
T Consensus       301 g~td~~irv~qv  312 (315)
T KOG0279|consen  301 GYTDNVIRVWQV  312 (315)
T ss_pred             eecCCcEEEEEe
Confidence            999887777755

>KOG0276|consensus

Probab=99.95  E-value=5e-27  Score=209.00  Aligned_cols=204  Identities=54%  Similarity=0.874  Sum_probs=185.2

Q ss_pred             eeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEE
Q psy4650          37 VDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQ  116 (381)
Q Consensus        37 ~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~  116 (381)
                      ..+.++|...+.+++++-|++|++|.+.+  ..+..+|+||...|+|+.|.+.|++++|+||+.|.+++|||+++..|++
T Consensus       144 Mqv~fnPkD~ntFaS~sLDrTVKVWslgs--~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~  221 (794)
T KOG0276|consen  144 MQVAFNPKDPNTFASASLDRTVKVWSLGS--PHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQ  221 (794)
T ss_pred             EEEEecCCCccceeeeeccccEEEEEcCC--CCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHH
Confidence            47778888888999999999999999974  4566889999999999999999999999999999999999999999999


Q ss_pred             EeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCC
Q psy4650         117 TLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKVGREE  196 (381)
Q Consensus       117 ~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~~~~~  196 (381)
                      ++.||+..|.++.|+|.-+.+++|+.||++++|+..+.+...++...-++++|++..+.+..++.|.++|.+.+..+++.
T Consensus       222 TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v~lgree  301 (794)
T KOG0276|consen  222 TLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTVKLGREE  301 (794)
T ss_pred             HhhcccccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEEEEccCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceEEEecCCCEEEEEecCceeecccccCCcc-------------------------ccccCCceEEeeehHH
Q psy4650         197 PAVSMDVNGCKIIWARHSEVQQANLKTMPEV-------------------------FENITAGVVLTLSVHV  243 (381)
Q Consensus       197 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~dg~~l~~~~~d  243 (381)
                      |.+++|. +|+.+|....+.+..++.+....                         ++.+|+|++++.+++.
T Consensus       302 P~vsMd~-~gKIiwa~~~ei~~~~~ks~~~~~ev~DgErL~LsvKeLgs~eiyPq~L~hsPNGrfV~VcgdG  372 (794)
T KOG0276|consen  302 PAVSMDS-NGKIIWAVHSEIQAVNLKSVGAQKEVTDGERLPLSVKELGSVEIYPQTLAHSPNGRFVVVCGDG  372 (794)
T ss_pred             CceeecC-CccEEEEcCceeeeeeceeccCcccccCCccccchhhhccccccchHHhccCCCCcEEEEecCc
Confidence            9999998 56999999888877766543321                         5678888888877653

>KOG0279|consensus

Probab=99.95  E-value=2e-26  Score=186.67  Aligned_cols=196  Identities=13%  Similarity=0.183  Sum_probs=162.5

Q ss_pred             cCCCceEEEEEecCCeEEEecCCCcc---ceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEEEe
Q psy4650          42 NKDMIEYKISYQESSRVKAFNPIQVA---TLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTL  118 (381)
Q Consensus        42 ~~~~~~~~~s~~~d~~v~i~~~~~~~---~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~  118 (381)
                      ...+..++++++.|.++.+|++....   ..+++.++||...|..+..+++++  +.++++.|+++++||+.+++..+.|
T Consensus        24 ~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~--~alS~swD~~lrlWDl~~g~~t~~f  101 (315)
T KOG0279|consen   24 KIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGN--FALSASWDGTLRLWDLATGESTRRF  101 (315)
T ss_pred             ecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCc--eEEeccccceEEEEEecCCcEEEEE
Confidence            34457799999999999999985432   345788999999999999999887  8999999999999999999999999


Q ss_pred             ccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEecC-CcceEEEEEcCC--CCEEEEEeCCCeEEEEecCC
Q psy4650         119 EGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYG-LERVWTISSLKG--SNNVAIGYDEGSVLLKVGRE  195 (381)
Q Consensus       119 ~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~-~~~v~~v~~~~~--~~~l~~~~~dg~v~i~~~~~  195 (381)
                      .+|+..|.+++|+|+.+.+++|+.|+++++|+.-++......... ++.|.|+.|+|+  ..++++++.|+++++     
T Consensus       102 ~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKv-----  176 (315)
T KOG0279|consen  102 VGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKV-----  176 (315)
T ss_pred             EecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEE-----
Confidence            999999999999999999999999999999998765443333333 789999999998  689999999999999     


Q ss_pred             CceEEEecCCCEEEEEecCceeecccccCCccccccCCceEEeeehHHHHHhccCCCcCh
Q psy4650         196 EPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSVHVTIKYRLDISDSH  255 (381)
Q Consensus       196 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~d~~~~~~d~~~~~  255 (381)
                           ||.++.+.......+..      ....++++|||..+++++.++..+.||+.+.+
T Consensus       177 -----Wnl~~~~l~~~~~gh~~------~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k  225 (315)
T KOG0279|consen  177 -----WNLRNCQLRTTFIGHSG------YVNTVTVSPDGSLCASGGKDGEAMLWDLNEGK  225 (315)
T ss_pred             -----EccCCcchhhccccccc------cEEEEEECCCCCEEecCCCCceEEEEEccCCc
Confidence                 77765554433222111      11125788999999999999999999997654

>KOG0263|consensus

Probab=99.94  E-value=8.9e-26  Score=206.36  Aligned_cols=220  Identities=20%  Similarity=0.245  Sum_probs=182.3

Q ss_pred             ceEEEEEecCCeEEEecCCC-----------------------------ccceeeEeeccccccEEEEEeeeCCCccEEE
Q psy4650          46 IEYKISYQESSRVKAFNPIQ-----------------------------VATLILKTLYGHEKGVNCVDYYHGGDKPYLI   96 (381)
Q Consensus        46 ~~~~~s~~~d~~v~i~~~~~-----------------------------~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~   96 (381)
                      ...++.|-.|..|++|.+..                             .+.....++.||.++|.++.|+|+..  +|+
T Consensus       390 ssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~sFsPd~r--fLl  467 (707)
T KOG0263|consen  390 SSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCSFSPDRR--FLL  467 (707)
T ss_pred             cchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeeeeeccccc--cee
Confidence            44889999999999998751                             01123456889999999999999665  999


Q ss_pred             EEcCCCeEEEEECCCCeEEEEeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEecCCcceEEEEEcCCC
Q psy4650          97 SGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGS  176 (381)
Q Consensus        97 s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~  176 (381)
                      +||.|+++|+|.+.+..++..++||..||+.+.|+|-|-++||+|.|++-++|......+++.+.+|-+.|.|+.|+|++
T Consensus       468 ScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs  547 (707)
T KOG0263|consen  468 SCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNS  547 (707)
T ss_pred             eccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhhcccccccceEEECCcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CEEEEEeCCCeEEEEecCCCceEEEecCCCEEEEEecCceeecccccCCccccccCCceEEeeehHHHHHhccCCCcChh
Q psy4650         177 NNVAIGYDEGSVLLKVGREEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSVHVTIKYRLDISDSHR  256 (381)
Q Consensus       177 ~~l~~~~~dg~v~i~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~d~~~~~~d~~~~~~  256 (381)
                      .++++||.|.++++          ||..+|..+--...+  ...+.+    ++++|+|++|++++.++.+..||+.... 
T Consensus       548 ~Y~aTGSsD~tVRl----------WDv~~G~~VRiF~GH--~~~V~a----l~~Sp~Gr~LaSg~ed~~I~iWDl~~~~-  610 (707)
T KOG0263|consen  548 NYVATGSSDRTVRL----------WDVSTGNSVRIFTGH--KGPVTA----LAFSPCGRYLASGDEDGLIKIWDLANGS-  610 (707)
T ss_pred             cccccCCCCceEEE----------EEcCCCcEEEEecCC--CCceEE----EEEcCCCceEeecccCCcEEEEEcCCCc-
Confidence            99999999999999          777666654333221  111111    5789999999999999999999997654 


Q ss_pred             HHHHHHHHHhhhhhhccccceeeEEEecc
Q psy4650         257 SVAKLRAAAETCMHVLSTLQSSNVFVESL  285 (381)
Q Consensus       257 ~~~~l~~~~e~ak~~lS~~~~~~i~~~~l  285 (381)
                      .+..++.+ ......+|.+....+.+...
T Consensus       611 ~v~~l~~H-t~ti~SlsFS~dg~vLasgg  638 (707)
T KOG0263|consen  611 LVKQLKGH-TGTIYSLSFSRDGNVLASGG  638 (707)
T ss_pred             chhhhhcc-cCceeEEEEecCCCEEEecC
Confidence            45566666 66666777766666665543

>KOG0266|consensus

Probab=99.93  E-value=1.4e-24  Score=202.08  Aligned_cols=213  Identities=23%  Similarity=0.329  Sum_probs=172.4

Q ss_pred             hcceeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCe
Q psy4650          34 ETKVDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKT  113 (381)
Q Consensus        34 ~~~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~  113 (381)
                      ....++.+.++ +.++++++.|+++++||... ....+++++||...|++++|+|.++  ++++|+.|++|++||+.+++
T Consensus       204 ~~v~~~~fs~d-~~~l~s~s~D~tiriwd~~~-~~~~~~~l~gH~~~v~~~~f~p~g~--~i~Sgs~D~tvriWd~~~~~  279 (456)
T KOG0266|consen  204 RGVSDVAFSPD-GSYLLSGSDDKTLRIWDLKD-DGRNLKTLKGHSTYVTSVAFSPDGN--LLVSGSDDGTVRIWDVRTGE  279 (456)
T ss_pred             cceeeeEECCC-CcEEEEecCCceEEEeeccC-CCeEEEEecCCCCceEEEEecCCCC--EEEEecCCCcEEEEeccCCe
Confidence            34456777777 45999999999999999943 4577899999999999999999885  89999999999999999999


Q ss_pred             EEEEeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCe--eeEEEecCCcc--eEEEEEcCCCCEEEEEeCCCeEE
Q psy4650         114 CVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHR--LEISLTYGLER--VWTISSLKGSNNVAIGYDEGSVL  189 (381)
Q Consensus       114 ~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~--~~~~~~~~~~~--v~~v~~~~~~~~l~~~~~dg~v~  189 (381)
                      +...+.+|.++|.+++|++++..+++++.|+.|++||+.++.  +...+..+...  +++++|+|++.++++++.|+.++
T Consensus       280 ~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~  359 (456)
T KOG0266|consen  280 CVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLK  359 (456)
T ss_pred             EEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEE
Confidence            999999999999999999999999999999999999999999  55666665544  99999999999999999999999


Q ss_pred             EEecCCCceEEEecCCCEEEEEecCceeecccccCCccccccCCceEEeeehHHHHHhccCCCcChhHHHHHHHH
Q psy4650         190 LKVGREEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSVHVTIKYRLDISDSHRSVAKLRAA  264 (381)
Q Consensus       190 i~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~d~~~~~~d~~~~~~~~~~l~~~  264 (381)
                      +          ||..++...-....+...  ..... ....+++|..+.+++.+..++.|++.. ...++++..+
T Consensus       360 ~----------w~l~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~i~sg~~d~~v~~~~~~s-~~~~~~l~~h  420 (456)
T KOG0266|consen  360 L----------WDLRSGKSVGTYTGHSNL--VRCIF-SPTLSTGGKLIYSGSEDGSVYVWDSSS-GGILQRLEGH  420 (456)
T ss_pred             E----------EEccCCcceeeecccCCc--ceeEe-cccccCCCCeEEEEeCCceEEEEeCCc-cchhhhhcCC
Confidence            9          555544433332222111  00000 023368999999999999999999876 3445555444

>KOG0266|consensus

Probab=99.93  E-value=2.7e-24  Score=200.14  Aligned_cols=199  Identities=20%  Similarity=0.332  Sum_probs=167.8

Q ss_pred             eeecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEEC-CCCeEEEE
Q psy4650          39 ITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDY-QNKTCVQT  117 (381)
Q Consensus        39 i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~-~~~~~~~~  117 (381)
                      +.+.+++. ++++++.++.+++|++.......++.+.+|...|.+++|+|++.  ++++|+.|+++++||+ ..+..+++
T Consensus       165 ~~fs~~g~-~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~--~l~s~s~D~tiriwd~~~~~~~~~~  241 (456)
T KOG0266|consen  165 VDFSPDGR-ALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGS--YLLSGSDDKTLRIWDLKDDGRNLKT  241 (456)
T ss_pred             EEEcCCCC-eEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCc--EEEEecCCceEEEeeccCCCeEEEE
Confidence            44466644 59999999999999995433236677899999999999999887  8999999999999999 55688999


Q ss_pred             eccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCc
Q psy4650         118 LEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKVGREEP  197 (381)
Q Consensus       118 ~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~~~~~~  197 (381)
                      +++|...|++++|+|++..+++|+.|++|++||++++++...+.+|.+.|++++|.+++.++++++.||.+++       
T Consensus       242 l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~v-------  314 (456)
T KOG0266|consen  242 LKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRV-------  314 (456)
T ss_pred             ecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEE-------
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999       


Q ss_pred             eEEEecCCCEEE--EEecCceeecccccCCccccccCCceEEeeehHHHHHhccCCCcC
Q psy4650         198 AVSMDVNGCKII--WARHSEVQQANLKTMPEVFENITAGVVLTLSVHVTIKYRLDISDS  254 (381)
Q Consensus       198 ~~~~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~d~~~~~~d~~~~  254 (381)
                         ||..++...  -........   . ....+.|+|+|.+++.+..++....|++...
T Consensus       315 ---wd~~~~~~~~~~~~~~~~~~---~-~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~  366 (456)
T KOG0266|consen  315 ---WDLETGSKLCLKLLSGAENS---A-PVTSVQFSPNGKYLLSASLDRTLKLWDLRSG  366 (456)
T ss_pred             ---EECCCCceeeeecccCCCCC---C-ceeEEEECCCCcEEEEecCCCeEEEEEccCC
Confidence               777777732  222111111   0 1112578899999999999999999998754

>KOG0282|consensus

Probab=99.93  E-value=1e-25  Score=195.17  Aligned_cols=222  Identities=18%  Similarity=0.208  Sum_probs=174.4

Q ss_pred             eeeecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEEE
Q psy4650          38 DITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQT  117 (381)
Q Consensus        38 ~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~  117 (381)
                      ++...+.....+++++.|+.|++|+... ...+++++.||..+|.+++|+++|.  .+.|+|.|+++++||.++|.++..
T Consensus       219 ai~~fp~~~hLlLS~gmD~~vklW~vy~-~~~~lrtf~gH~k~Vrd~~~s~~g~--~fLS~sfD~~lKlwDtETG~~~~~  295 (503)
T KOG0282|consen  219 AIQWFPKKGHLLLSGGMDGLVKLWNVYD-DRRCLRTFKGHRKPVRDASFNNCGT--SFLSASFDRFLKLWDTETGQVLSR  295 (503)
T ss_pred             hhhhccceeeEEEecCCCceEEEEEEec-CcceehhhhcchhhhhhhhccccCC--eeeeeecceeeeeeccccceEEEE
Confidence            3444555577999999999999999986 6789999999999999999999887  699999999999999999999988


Q ss_pred             eccCCCCEEEEEEecCC-CEEEEEeCCCCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCC
Q psy4650         118 LEGHGQNISAVCFHPEL-PIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKVGREE  196 (381)
Q Consensus       118 ~~~~~~~v~~~~~~p~~-~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~~~~~  196 (381)
                      +.. ...+.|+.|+|++ ..+++|+.|+.|+.||.++++.++.+..|-+.+..+.|.++|+.+++.++|+.+++|..+..
T Consensus       296 f~~-~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~  374 (503)
T KOG0282|consen  296 FHL-DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIP  374 (503)
T ss_pred             Eec-CCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCC
Confidence            874 3467999999999 68999999999999999999999999999999999999999999999999999999985432


Q ss_pred             ceEEEecCCC------------------------EEEEEecCc--------eeecccccCCccccccCCceEEeeehHHH
Q psy4650         197 PAVSMDVNGC------------------------KIIWARHSE--------VQQANLKTMPEVFENITAGVVLTLSVHVT  244 (381)
Q Consensus       197 ~~~~~d~~~~------------------------~~~~~~~~~--------~~~~~~~~~~~~~~~~~dg~~l~~~~~d~  244 (381)
                      ..+.+..+..                        ..+++....        .......+.+..+.|||||.+|.+|..++
T Consensus       375 v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG  454 (503)
T KOG0282|consen  375 VPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDG  454 (503)
T ss_pred             ccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCc
Confidence            2222211110                        111111100        11112233444479999999999999999


Q ss_pred             HHhccCCCcChhHHHHHHHH
Q psy4650         245 IKYRLDISDSHRSVAKLRAA  264 (381)
Q Consensus       245 ~~~~~d~~~~~~~~~~l~~~  264 (381)
                      ..++||...- +.+.++..+
T Consensus       455 ~v~~wdwkt~-kl~~~lkah  473 (503)
T KOG0282|consen  455 KVNFWDWKTT-KLVSKLKAH  473 (503)
T ss_pred             cEEEeechhh-hhhhccccC
Confidence            9999998653 233444444

>KOG0284|consensus

Probab=99.92  E-value=7.2e-25  Score=186.14  Aligned_cols=219  Identities=18%  Similarity=0.270  Sum_probs=169.2

Q ss_pred             hHHHHhhhcceeeee---cCCCceEEEEEecCCeEEEecCCCccceeeEeecccc-ccEEEEEeeeCCCccEEEEEcCCC
Q psy4650          27 DIETIVRETKVDITT---NKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHE-KGVNCVDYYHGGDKPYLISGADDR  102 (381)
Q Consensus        27 ~~~~~~~~~~~~i~~---~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~-~~v~~~~~~~~~~~~~l~s~~~d~  102 (381)
                      ..+.+...|...|..   ..+ +.++++|..+|.|+.|++..   ..++..++|. ..|.+++|+|...  .+++||.||
T Consensus       129 nFEtilQaHDs~Vr~m~ws~~-g~wmiSgD~gG~iKyWqpnm---nnVk~~~ahh~eaIRdlafSpnDs--kF~t~SdDg  202 (464)
T KOG0284|consen  129 NFETILQAHDSPVRTMKWSHN-GTWMISGDKGGMIKYWQPNM---NNVKIIQAHHAEAIRDLAFSPNDS--KFLTCSDDG  202 (464)
T ss_pred             eHHHHhhhhcccceeEEEccC-CCEEEEcCCCceEEecccch---hhhHHhhHhhhhhhheeccCCCCc--eeEEecCCC
Confidence            345556666655543   444 67999999999999999853   3344455555 9999999999655  799999999


Q ss_pred             eEEEEECCCCeEEEEeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEE
Q psy4650         103 LVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIG  182 (381)
Q Consensus       103 ~v~vwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~  182 (381)
                      +|+|||....+....+.||...|.+++|||....+++||.|..|++||.++|.++.++.+|...|..+.|.|++++|+++
T Consensus       203 ~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~  282 (464)
T KOG0284|consen  203 TIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTG  282 (464)
T ss_pred             eEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEc
Confidence            99999999998888999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCeEEEEecC-CCce------------EEEe-----------cCCCEEEEEecCceeecccc-c---CCccccccCCc
Q psy4650         183 YDEGSVLLKVGR-EEPA------------VSMD-----------VNGCKIIWARHSEVQQANLK-T---MPEVFENITAG  234 (381)
Q Consensus       183 ~~dg~v~i~~~~-~~~~------------~~~d-----------~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~dg  234 (381)
                      +.|..+++++.+ ...+            +.|.           .++....|....+.....+. +   ....+++.|-|
T Consensus       283 skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlG  362 (464)
T KOG0284|consen  283 SKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLG  362 (464)
T ss_pred             cCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEEEeccccccccCCCcccccceeeeeccccc
Confidence            999999997643 1111            1111           12233344433222222211 1   11126778999


Q ss_pred             eEEeeehHHHHHhccCC
Q psy4650         235 VVLTLSVHVTIKYRLDI  251 (381)
Q Consensus       235 ~~l~~~~~d~~~~~~d~  251 (381)
                      -+|++++.|.....|.-
T Consensus       363 hil~tgsnd~t~rfw~r  379 (464)
T KOG0284|consen  363 HILATGSNDRTVRFWTR  379 (464)
T ss_pred             eeEeecCCCcceeeecc
Confidence            99999999998888854

>KOG0285|consensus

Probab=99.92  E-value=3.8e-24  Score=178.99  Aligned_cols=152  Identities=22%  Similarity=0.334  Sum_probs=140.8

Q ss_pred             eeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEE
Q psy4650          37 VDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQ  116 (381)
Q Consensus        37 ~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~  116 (381)
                      .++...|. .+++++|+.|++++|||+.  ...+..++.||-..|..+++|+..-  |+.+++.|+.|+.||+...+.++
T Consensus       155 r~vavdP~-n~wf~tgs~DrtikIwDla--tg~LkltltGhi~~vr~vavS~rHp--YlFs~gedk~VKCwDLe~nkvIR  229 (460)
T KOG0285|consen  155 RSVAVDPG-NEWFATGSADRTIKIWDLA--TGQLKLTLTGHIETVRGVAVSKRHP--YLFSAGEDKQVKCWDLEYNKVIR  229 (460)
T ss_pred             EEEeeCCC-ceeEEecCCCceeEEEEcc--cCeEEEeecchhheeeeeeecccCc--eEEEecCCCeeEEEechhhhhHH
Confidence            34555554 7899999999999999997  4677789999999999999998654  99999999999999999999999


Q ss_pred             EeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCCCeEEEEec
Q psy4650         117 TLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKVG  193 (381)
Q Consensus       117 ~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~~  193 (381)
                      .+.||-..|.|++.+|.-..+++|+.|.+++|||+++...+..+.+|...|.+|.+.|....+++|+.|++|++|+-
T Consensus       230 ~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl  306 (460)
T KOG0285|consen  230 HYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDL  306 (460)
T ss_pred             HhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999773

>KOG0286|consensus

Probab=99.92  E-value=1.9e-23  Score=170.41  Aligned_cols=186  Identities=17%  Similarity=0.217  Sum_probs=158.0

Q ss_pred             ceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEEEeccCCCCE
Q psy4650          46 IEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNI  125 (381)
Q Consensus        46 ~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v  125 (381)
                      ..-+++++.|.+.-+||++  ..+.+..+.||.+.|.++.++|. +.+.+++|+.|++.++||++.+.+.++|.+|...|
T Consensus       156 D~~ilT~SGD~TCalWDie--~g~~~~~f~GH~gDV~slsl~p~-~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDI  232 (343)
T KOG0286|consen  156 DNHILTGSGDMTCALWDIE--TGQQTQVFHGHTGDVMSLSLSPS-DGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDI  232 (343)
T ss_pred             CCceEecCCCceEEEEEcc--cceEEEEecCCcccEEEEecCCC-CCCeEEecccccceeeeeccCcceeEeeccccccc
Confidence            3468999999999999998  46677889999999999999994 22489999999999999999999999999999999


Q ss_pred             EEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEec--CCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCceEEEec
Q psy4650         126 SAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTY--GLERVWTISSLKGSNNVAIGYDEGSVLLKVGREEPAVSMDV  203 (381)
Q Consensus       126 ~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~--~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~~~~~~~~~~d~  203 (381)
                      .++.|.|+|..+++|+.|++.++||++..+.+..+..  ....|++++|+..|++|.+|..|..+.+          ||.
T Consensus       233 Nsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~v----------WDt  302 (343)
T KOG0286|consen  233 NSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNV----------WDT  302 (343)
T ss_pred             ceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeE----------eec
Confidence            9999999999999999999999999999888777753  3457999999999999999999999999          777


Q ss_pred             CCCEEEEEecCceeecccccCCccccccCCceEEeeehHHHHHhccC
Q psy4650         204 NGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSVHVTIKYRLD  250 (381)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~d~~~~~~d  250 (381)
                      -.+..+-.+..+......      +..+|||..+.+++-|....+|.
T Consensus       303 lk~e~vg~L~GHeNRvSc------l~~s~DG~av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  303 LKGERVGVLAGHENRVSC------LGVSPDGMAVATGSWDSTLRIWA  343 (343)
T ss_pred             cccceEEEeeccCCeeEE------EEECCCCcEEEecchhHheeecC
Confidence            666665554433222221      23468999999999998887773

>KOG0316|consensus

Probab=99.92  E-value=1.2e-23  Score=166.69  Aligned_cols=229  Identities=20%  Similarity=0.255  Sum_probs=178.3

Q ss_pred             ceeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEE
Q psy4650          36 KVDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCV  115 (381)
Q Consensus        36 ~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~  115 (381)
                      +...+.-+..++|.++++.|.+|++|+|.  ...+++++.||...|..++.+.+..  .+++|+.|+.+.+||+.+|+..
T Consensus        19 aV~avryN~dGnY~ltcGsdrtvrLWNp~--rg~liktYsghG~EVlD~~~s~Dns--kf~s~GgDk~v~vwDV~TGkv~   94 (307)
T KOG0316|consen   19 AVRAVRYNVDGNYCLTCGSDRTVRLWNPL--RGALIKTYSGHGHEVLDAALSSDNS--KFASCGGDKAVQVWDVNTGKVD   94 (307)
T ss_pred             ceEEEEEccCCCEEEEcCCCceEEeeccc--ccceeeeecCCCceeeecccccccc--ccccCCCCceEEEEEcccCeee
Confidence            33334334447899999999999999997  5678999999999999999988777  6999999999999999999999


Q ss_pred             EEeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCC--CeeeEEEecCCcceEEEEEcCCCCEEEEEeCCCeEEEEec
Q psy4650         116 QTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGT--HRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKVG  193 (381)
Q Consensus       116 ~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~--~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~~  193 (381)
                      +.+.+|.+.|+.+.|+.+...+++|+.|..+++||.++  .++++.+....+.|.++...  +..+++|+.||+++.   
T Consensus        95 Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~DGtvRt---  169 (307)
T KOG0316|consen   95 RRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGTVRT---  169 (307)
T ss_pred             eecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeeccCCcEEE---
Confidence            99999999999999999999999999999999999875  45788888888889888875  557899999999998   


Q ss_pred             CCCceEEEecCCCEEEEEecCceeecccccCCccccccCCceEEeeehHHHHHhccCCCcChhHHHHHHHHHh---hh--
Q psy4650         194 REEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSVHVTIKYRLDISDSHRSVAKLRAAAE---TC--  268 (381)
Q Consensus       194 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~d~~~~~~d~~~~~~~~~~l~~~~e---~a--  268 (381)
                             ||.+.|.+..+...+.    +.    ...|++||.....+.-+...+..|-... +.++..+.+..   +.  
T Consensus       170 -------ydiR~G~l~sDy~g~p----it----~vs~s~d~nc~La~~l~stlrLlDk~tG-klL~sYkGhkn~eykldc  233 (307)
T KOG0316|consen  170 -------YDIRKGTLSSDYFGHP----IT----SVSFSKDGNCSLASSLDSTLRLLDKETG-KLLKSYKGHKNMEYKLDC  233 (307)
T ss_pred             -------EEeecceeehhhcCCc----ce----eEEecCCCCEEEEeeccceeeecccchh-HHHHHhcccccceeeeee
Confidence                   8887777554432221    11    1467889999888888887777765433 33444333322   12  


Q ss_pred             ------hhhccccceeeEEEecccCCc
Q psy4650         269 ------MHVLSTLQSSNVFVESLYDGL  289 (381)
Q Consensus       269 ------k~~lS~~~~~~i~~~~l~~g~  289 (381)
                            ..+.|.++...++++.|.++.
T Consensus       234 ~l~qsdthV~sgSEDG~Vy~wdLvd~~  260 (307)
T KOG0316|consen  234 CLNQSDTHVFSGSEDGKVYFWDLVDET  260 (307)
T ss_pred             eecccceeEEeccCCceEEEEEeccce
Confidence                  234466667777777765543

>KOG0102|consensus

Probab=99.92  E-value=1e-26  Score=205.00  Aligned_cols=295  Identities=17%  Similarity=0.293  Sum_probs=210.7

Q ss_pred             CchhhhHHHhhhhhcccccccCCChhhHHHHhhhcceeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccc-
Q psy4650           1 KSRLISQAKNTIIKNKRALNTELTETDIETIVRETKVDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEK-   79 (381)
Q Consensus         1 ~~~~~~~~~~t~~~~k~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~-   79 (381)
                      |+|...||.||++.-||+|||+|.+|++|++++.+||+++...++..++-+   .|  +.|.+.++....++.++.|.. 
T Consensus        80 krqav~n~~ntffatKrligRrf~d~evq~~~k~vpyKiVk~~ngdaw~e~---~G--~~~spsqig~~vl~kmk~tae~  154 (640)
T KOG0102|consen   80 KRQAVTNPENTFFATKRLIGRRFDDPEVQKDIKQVPYKIVKASNGDAWVEA---RG--KQYSPSQIGAFVLMKMKETAEA  154 (640)
T ss_pred             hhhhccCCCceEEEehhhhhhhccCHHHHHHHHhCCcceEEccCCcEEEEe---CC--eEecHHHHHHHHHHHHHHHHHH
Confidence            579999999999999999999999999999999999999998776655443   33  568887777776666654422 


Q ss_pred             --------cE-EEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEEEeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEe
Q psy4650          80 --------GV-NCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWH  150 (381)
Q Consensus        80 --------~v-~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd  150 (381)
                              .| +--+|..+.++  -+|-+ -|.     +.....++.+..|+....+  |.-++.      .+|.+.|||
T Consensus       155 yl~~~v~~avvtvpAyfndsqR--qaTkd-ag~-----iagl~vlrvineptaaala--ygld~k------~~g~iaV~d  218 (640)
T KOG0102|consen  155 YLGKKVKNAVITVPAYFNDSQR--QATKD-AGQ-----IAGLNVLRVINEPTAAALA--YGLDKK------EDGVIAVFD  218 (640)
T ss_pred             HcCchhhheeeccHHHHhHHHH--HHhHh-hhh-----hccceeeccCCccchhHHh--hccccc------CCCceEEEE
Confidence                    22 12233332221  11110 111     1122345556666654333  333332      378999999


Q ss_pred             CCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCceEEEecCCCEEEEEecCceeecccccCCccccc
Q psy4650         151 SGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKVGREEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFEN  230 (381)
Q Consensus       151 ~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (381)
                      +..|....++..-...|.-+..... ..+..|.+                +|                            
T Consensus       219 Lgggtfdisilei~~gvfevksTng-dtflgged----------------fd----------------------------  253 (640)
T KOG0102|consen  219 LGGGTFDISILEIEDGVFEVKSTNG-DTHLGGED----------------FD----------------------------  253 (640)
T ss_pred             cCCceeeeeeehhccceeEEEeccC-ccccChhH----------------HH----------------------------
Confidence            9999988877766566655543322 11111111                11                            


Q ss_pred             cCCceEEeeehHHHHHhccCCCcChhHHHHHHHHHhhhhhhccccceeeEEEecccCC----cccccccChHHHHHHHHH
Q psy4650         231 ITAGVVLTLSVHVTIKYRLDISDSHRSVAKLRAAAETCMHVLSTLQSSNVFVESLYDG----LDFHHNVSRARFESLIGG  306 (381)
Q Consensus       231 ~~dg~~l~~~~~d~~~~~~d~~~~~~~~~~l~~~~e~ak~~lS~~~~~~i~~~~l~~g----~~~~~~itr~~fe~l~~~  306 (381)
                        .--.......+.+....|+..+.+++++++.++|++|+.||+..+..++++....+    ..+...+||.+||+++.+
T Consensus       254 --~~~~~~~v~~fk~~~gidl~kd~~a~qrl~eaaEkaKielSs~~~tei~lp~iTada~gpkh~~i~~tr~efe~~v~~  331 (640)
T KOG0102|consen  254 --NALVRFIVSEFKKEEGIDLTKDRMALQRLREAAEKAKIELSSRQQTEINLPFITADASGPKHLNIELTRGEFEELVPS  331 (640)
T ss_pred             --HHHHHHHHHhhhcccCcchhhhHHHHHHHHHHHHhhhhhhhhcccceeccceeeccCCCCeeEEEeecHHHHHHhhHH
Confidence              11111222344445568888999999999999999999999999999999988876    668999999999999999


Q ss_pred             HhhhhhhhhHhhhccccceeeEeeccccCcceEEeecHHHHHHHHHHHHH----HhHHHHHHHH
Q psy4650         307 LLTSFVQPCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIGGLLT----SFVQPIEDVL  366 (381)
Q Consensus       307 l~~~~~~~~~~~Ls~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~----~~~~~~~~~l  366 (381)
                      +++|+++||+++|.+   |.+..++|.+++++||.+++|++.+.+.++|+    +..+|-|.+-
T Consensus       332 lI~Rti~p~~~aL~d---A~~~~~di~EV~lvggmtrmpkv~s~V~e~fgk~p~~~vnPdeava  392 (640)
T KOG0102|consen  332 LIARTIEPCKKALRD---ASLSSSDINEVILVGGMTRMPKVQSTVKELFGKGPSKGVNPDEAVA  392 (640)
T ss_pred             HHHhhhhHHHHHHHh---ccCChhhhhhhhhhcchhhcHHHHHHHHHHhCCCCCCCcCCcchhc
Confidence            999999999999999   66778889999999999999999999999998    4556665544

>KOG0645|consensus

Probab=99.92  E-value=1e-22  Score=164.52  Aligned_cols=197  Identities=18%  Similarity=0.202  Sum_probs=159.5

Q ss_pred             eeeeecCCCceEEEEEecCCeEEEecCCC-ccceeeEee-ccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCC--
Q psy4650          37 VDITTNKDMIEYKISYQESSRVKAFNPIQ-VATLILKTL-YGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNK--  112 (381)
Q Consensus        37 ~~i~~~~~~~~~~~s~~~d~~v~i~~~~~-~~~~~~~~l-~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~--  112 (381)
                      ..+..+|..+.++++++.|+.|++|+... ..-.+...+ .+|+..|.+++|+|.|.  +|++||.|.++.||.-..+  
T Consensus        18 W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~--~La~aSFD~t~~Iw~k~~~ef   95 (312)
T KOG0645|consen   18 WSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGR--YLASASFDATVVIWKKEDGEF   95 (312)
T ss_pred             EEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCc--EEEEeeccceEEEeecCCCce
Confidence            34556666567999999999999999863 223333333 47999999999999887  9999999999999987655  


Q ss_pred             eEEEEeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCC---eeeEEEecCCcceEEEEEcCCCCEEEEEeCCCeEE
Q psy4650         113 TCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTH---RLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVL  189 (381)
Q Consensus       113 ~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~---~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~  189 (381)
                      +++..+.||...|.|++|+++|.+||+|+.|+.|.||....+   .+...++.|...|-.+.|+|...+|++++.|++|+
T Consensus        96 ecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk  175 (312)
T KOG0645|consen   96 ECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIK  175 (312)
T ss_pred             eEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEE
Confidence            578899999999999999999999999999999999998743   46778899999999999999999999999999999


Q ss_pred             EEecCC-C---ceEEEecCCCEEEEEecCceeecccccCCccccccCCceEEeeehHHHHHhccCCC
Q psy4650         190 LKVGRE-E---PAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSVHVTIKYRLDIS  252 (381)
Q Consensus       190 i~~~~~-~---~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~d~~~~~~d~~  252 (381)
                      +|...+ +   .+..++.+++ -+|.                .+|.+.|..|+++++|..+.+|...
T Consensus       176 ~~~~~~dddW~c~~tl~g~~~-TVW~----------------~~F~~~G~rl~s~sdD~tv~Iw~~~  225 (312)
T KOG0645|consen  176 VYRDEDDDDWECVQTLDGHEN-TVWS----------------LAFDNIGSRLVSCSDDGTVSIWRLY  225 (312)
T ss_pred             EEeecCCCCeeEEEEecCccc-eEEE----------------EEecCCCceEEEecCCcceEeeeec
Confidence            976442 1   2333333332 2333                3567889999999999998888643

>KOG0101|consensus

Probab=99.91  E-value=6.3e-26  Score=207.75  Aligned_cols=304  Identities=17%  Similarity=0.252  Sum_probs=203.6

Q ss_pred             CchhhhHHHhhhhhcccccccCCChhhHHHHhhhcceeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeecccc--
Q psy4650           1 KSRLISQAKNTIIKNKRALNTELTETDIETIVRETKVDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHE--   78 (381)
Q Consensus         1 ~~~~~~~~~~t~~~~k~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~--   78 (381)
                      +.|+.+||.||++.+||++|+.|++|+++..+++.|+.+....+ ....+.....+.-+.+.+.+.....+..++.-.  
T Consensus        59 ~~qv~~np~ntv~~~krliGr~f~d~~v~~~~k~~pf~V~~~~~-~~~~i~~~~~~~~~~f~peeiss~~L~klke~Ae~  137 (620)
T KOG0101|consen   59 KNQVARNPDNTVFDAKRLIGRFFDDPEVQSDMKLWPFKVISDQG-GKPKIQVTYKGETKSFNPEEISSMVLTKLKETAEA  137 (620)
T ss_pred             hhhhhcCCcceeeehhhhcCccccchhhHhHhhcCCcccccccC-CcceEEecccccceeeeeeeeeehhccccHHHHHH
Confidence            46889999999999999999999999999999999999984443 333333344444566666665655555554211  


Q ss_pred             ---ccEEEEEee-e---CCCccEEEEEcCCCeEEEEECCCCeEEEEeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeC
Q psy4650          79 ---KGVNCVDYY-H---GGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHS  151 (381)
Q Consensus        79 ---~~v~~~~~~-~---~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~  151 (381)
                         ..|..+... |   +... .-++... +     .+.....++.+..++....+....  ..    +.....|.|||+
T Consensus       138 ~Lg~~v~~aviTVPa~F~~~Q-r~at~~A-~-----~iaGl~vlrii~EPtAaalAygl~--k~----~~~~~~VlI~Dl  204 (620)
T KOG0101|consen  138 YLGKTVKKAVVTVPAYFNDSQ-RAATKDA-A-----LIAGLNVLRIINEPTAAALAYGLD--KK----VLGERNVLIFDL  204 (620)
T ss_pred             HhcCceeeEEEEecCCcCHHH-HHHHHHH-H-----HhcCCceeeeecchHHHHHHhhcc--cc----ccceeeEEEEEc
Confidence               122222211 1   0000 0000000 0     001123344444444332222221  11    334667899999


Q ss_pred             CCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCceEEEecCCCEEEEEecCceeecccccCCcccccc
Q psy4650         152 GTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKVGREEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENI  231 (381)
Q Consensus       152 ~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (381)
                      ..|+...+.-.-.+.+..+        .+++                                  ....+++-.     .
T Consensus       205 Gggtfdvs~l~i~gG~~~v--------kat~----------------------------------gd~~lGGed-----f  237 (620)
T KOG0101|consen  205 GGGTFDVSVLSLEGGIFEV--------KATA----------------------------------GDTHLGGED-----F  237 (620)
T ss_pred             CCCceeeeeEEeccchhhh--------hhhc----------------------------------ccccccchh-----h
Confidence            9887655432211111000        0000                                  111222222     2


Q ss_pred             CCceEEeeehHHHHHhccCCCcChhHHHHHHHHHhhhhhhccccceeeEEEecccCCcccccccChHHHHHHHHHHhhhh
Q psy4650         232 TAGVVLTLSVHVTIKYRLDISDSHRSVAKLRAAAETCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIGGLLTSF  311 (381)
Q Consensus       232 ~dg~~l~~~~~d~~~~~~d~~~~~~~~~~l~~~~e~ak~~lS~~~~~~i~~~~l~~g~~~~~~itr~~fe~l~~~l~~~~  311 (381)
                      .+....+....+.+++..|+..+.+++++|+.+||++|+.||+..++++.+++|++|.+|...++|.+||++|.++++++
T Consensus       238 ~~~l~~h~~~ef~~k~~~d~~~n~r~l~rLR~a~E~aKr~LS~~~~~~i~vdsL~~g~d~~~~itrarfe~l~~dlf~~~  317 (620)
T KOG0101|consen  238 DNKLVNHFAAEFKRKAGKDIGGNARALRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRST  317 (620)
T ss_pred             hHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhhhcccccceeccchhhccccccceeehhhhhhhhhHHHHHH
Confidence            34555567778888899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhHhhhccccceeeEeeccccCcceEEeecHHHHHHHHHHHHH-----HhHHHHHHHHHh
Q psy4650         312 VQPCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIGGLLT-----SFVQPIEDVLSR  368 (381)
Q Consensus       312 ~~~~~~~Ls~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~-----~~~~~~~~~l~~  368 (381)
                      .+++.++|.+   +.++...+++++++||+++.|+++.+++++|+     +.++|-+.+-..
T Consensus       318 ~~~v~~~L~d---a~~dk~~i~~vvlVGGstriPk~~~ll~d~f~~k~~~~sinpDeavA~G  376 (620)
T KOG0101|consen  318 LEPVEKALKD---AKLDKSDIDEVVLVGGSTRIPKVQKLLEDFFNGKELNKSINPDEAVAYG  376 (620)
T ss_pred             HHHHHHHHHh---hccCccCCceeEEecCcccchHHHHHHHHHhcccccccCCCHHHHHHhh
Confidence            9999999998   55667778899999999999999999999998     444554444433

>KOG0315|consensus

Probab=99.91  E-value=6.2e-23  Score=163.90  Aligned_cols=193  Identities=19%  Similarity=0.284  Sum_probs=142.1

Q ss_pred             eeecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEEEe
Q psy4650          39 ITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTL  118 (381)
Q Consensus        39 i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~  118 (381)
                      +.-.++. .+|++++ .-.|++||+......++.++.+|+..|+++.|..+|.  .+++||.||+++|||++...+.+.+
T Consensus        46 LeiTpdk-~~LAaa~-~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgr--WMyTgseDgt~kIWdlR~~~~qR~~  121 (311)
T KOG0315|consen   46 LEITPDK-KDLAAAG-NQHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGR--WMYTGSEDGTVKIWDLRSLSCQRNY  121 (311)
T ss_pred             EEEcCCc-chhhhcc-CCeeEEEEccCCCCCceeEEeccCCceEEEEEeecCe--EEEecCCCceEEEEeccCcccchhc
Confidence            3334442 3455444 4589999999888889999999999999999999776  9999999999999999997777777


Q ss_pred             ccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEE--------------------------------------
Q psy4650         119 EGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISL--------------------------------------  160 (381)
Q Consensus       119 ~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~--------------------------------------  160 (381)
                      + |.++|+++..+|....|++|..+|.|++||+....+...+                                      
T Consensus       122 ~-~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~  200 (311)
T KOG0315|consen  122 Q-HNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQ  200 (311)
T ss_pred             c-CCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCC
Confidence            6 7799999999999999999999999999999865332222                                      


Q ss_pred             -----------ecCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCceEEEecCCCEEEEEecCc-eeecccccCCc--
Q psy4650         161 -----------TYGLERVWTISSLKGSNNVAIGYDEGSVLLKVGREEPAVSMDVNGCKIIWARHSE-VQQANLKTMPE--  226 (381)
Q Consensus       161 -----------~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~~~~~~~~~~d~~~~~~~~~~~~~-~~~~~~~~~~~--  226 (381)
                                 +.|...+..+.++|++++||+++.|.++++|.                   .... .....+.++..  
T Consensus       201 ~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn-------------------~~~~~kle~~l~gh~rWv  261 (311)
T KOG0315|consen  201 TASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWN-------------------TDDFFKLELVLTGHQRWV  261 (311)
T ss_pred             ccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEe-------------------cCCceeeEEEeecCCceE
Confidence                       22333444555555555555555555555533                   2222 12223333332  


Q ss_pred             -cccccCCceEEeeehHHHHHhccCCCcCh
Q psy4650         227 -VFENITAGVVLTLSVHVTIKYRLDISDSH  255 (381)
Q Consensus       227 -~~~~~~dg~~l~~~~~d~~~~~~d~~~~~  255 (381)
                       ..+|+.||++|++++.|...+.|+++.++
T Consensus       262 Wdc~FS~dg~YlvTassd~~~rlW~~~~~k  291 (311)
T KOG0315|consen  262 WDCAFSADGEYLVTASSDHTARLWDLSAGK  291 (311)
T ss_pred             EeeeeccCccEEEecCCCCceeecccccCc
Confidence             26889999999999999999999987654

>KOG0276|consensus

Probab=99.91  E-value=1e-23  Score=188.09  Aligned_cols=155  Identities=21%  Similarity=0.285  Sum_probs=141.9

Q ss_pred             eeeecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEEE
Q psy4650          38 DITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQT  117 (381)
Q Consensus        38 ~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~  117 (381)
                      ++..+|. ..|++++++|-+|++|+.+. .-.+.+++.||+..|.+++|.|... +.++||+-|++|+||.+.+..+..+
T Consensus       102 ~iavHPt-~P~vLtsSDDm~iKlW~we~-~wa~~qtfeGH~HyVMqv~fnPkD~-ntFaS~sLDrTVKVWslgs~~~nfT  178 (794)
T KOG0276|consen  102 SIAVHPT-LPYVLTSSDDMTIKLWDWEN-EWACEQTFEGHEHYVMQVAFNPKDP-NTFASASLDRTVKVWSLGSPHPNFT  178 (794)
T ss_pred             eeeecCC-CCeEEecCCccEEEEeeccC-ceeeeeEEcCcceEEEEEEecCCCc-cceeeeeccccEEEEEcCCCCCcee
Confidence            6667776 45999999999999999864 5667889999999999999999765 4899999999999999999999999


Q ss_pred             eccCCCCEEEEEEecCC--CEEEEEeCCCCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCC
Q psy4650         118 LEGHGQNISAVCFHPEL--PIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKVGRE  195 (381)
Q Consensus       118 ~~~~~~~v~~~~~~p~~--~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~~~~  195 (381)
                      +.+|..+|.|+.|-+.|  +++++|+.|.+++|||..+.+++.++.+|...|..++|+|.-..+++|+.||++++|....
T Consensus       179 l~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~T  258 (794)
T KOG0276|consen  179 LEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKT  258 (794)
T ss_pred             eeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcc
Confidence            99999999999998744  6999999999999999999999999999999999999999999999999999999987553

>KOG0645|consensus

Probab=99.91  E-value=2.1e-22  Score=162.75  Aligned_cols=170  Identities=21%  Similarity=0.327  Sum_probs=147.7

Q ss_pred             ccCCChhhHH-HHhhhcceeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEE
Q psy4650          20 NTELTETDIE-TIVRETKVDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISG   98 (381)
Q Consensus        20 ~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~   98 (381)
                      |+.+++..+. ..-++....+...|. +.||++|+.|.++-||.-.+..-.++.+|.||...|.|++|+++|.  +||+|
T Consensus        47 ~~s~~ck~vld~~hkrsVRsvAwsp~-g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~--~LATC  123 (312)
T KOG0645|consen   47 GDSWTCKTVLDDGHKRSVRSVAWSPH-GRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGN--YLATC  123 (312)
T ss_pred             CCcEEEEEeccccchheeeeeeecCC-CcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCC--EEEEe
Confidence            4445554322 234466677778777 4599999999999999987767788999999999999999999887  99999


Q ss_pred             cCCCeEEEEECCCC---eEEEEeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCC---CCeeeEEEecCCcceEEEEE
Q psy4650          99 ADDRLVKIWDYQNK---TCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSG---THRLEISLTYGLERVWTISS  172 (381)
Q Consensus        99 ~~d~~v~vwd~~~~---~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~---~~~~~~~~~~~~~~v~~v~~  172 (381)
                      +.|++|-+|.+..+   .+...+.+|+..|..+.|||...+|++++.|.+|++|+-.   ...+.+++.+|...|+++.|
T Consensus       124 SRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F  203 (312)
T KOG0645|consen  124 SRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAF  203 (312)
T ss_pred             eCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEe
Confidence            99999999998754   4778899999999999999999999999999999999876   34578899999999999999


Q ss_pred             cCCCCEEEEEeCCCeEEEEe
Q psy4650         173 LKGSNNVAIGYDEGSVLLKV  192 (381)
Q Consensus       173 ~~~~~~l~~~~~dg~v~i~~  192 (381)
                      +|.|..|+++++|+++++|.
T Consensus       204 ~~~G~rl~s~sdD~tv~Iw~  223 (312)
T KOG0645|consen  204 DNIGSRLVSCSDDGTVSIWR  223 (312)
T ss_pred             cCCCceEEEecCCcceEeee
Confidence            99999999999999999987

>KOG0285|consensus

Probab=99.91  E-value=3.1e-23  Score=173.55  Aligned_cols=211  Identities=22%  Similarity=0.289  Sum_probs=169.4

Q ss_pred             ceeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEE
Q psy4650          36 KVDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCV  115 (381)
Q Consensus        36 ~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~  115 (381)
                      ...+..++. ..|+++++.|+.|+.||++.  ..+++.+.||-..|.|++.+|.-+  .|++|+.|.++++||+++...+
T Consensus       196 vr~vavS~r-HpYlFs~gedk~VKCwDLe~--nkvIR~YhGHlS~V~~L~lhPTld--vl~t~grDst~RvWDiRtr~~V  270 (460)
T KOG0285|consen  196 VRGVAVSKR-HPYLFSAGEDKQVKCWDLEY--NKVIRHYHGHLSGVYCLDLHPTLD--VLVTGGRDSTIRVWDIRTRASV  270 (460)
T ss_pred             eeeeeeccc-CceEEEecCCCeeEEEechh--hhhHHHhccccceeEEEeccccce--eEEecCCcceEEEeeecccceE
Confidence            344445544 67999999999999999984  567899999999999999999655  8999999999999999999999


Q ss_pred             EEeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCCCeEEE-----
Q psy4650         116 QTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLL-----  190 (381)
Q Consensus       116 ~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i-----  190 (381)
                      .++.||..+|..+.+.|..+.+++|+.|++|++||++.|+...++..|...|.+++.+|....+|+++.|..-..     
T Consensus       271 ~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dnik~w~~p~g  350 (460)
T KOG0285|consen  271 HVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDNIKQWKLPEG  350 (460)
T ss_pred             EEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCccceeccCCcc
Confidence            999999999999999999999999999999999999999999999999999999999999888888887653222     


Q ss_pred             -------------------------EecCCCceEEEecCCCEEEEEecCceeecccccCCcc--ccccCCceEEeeehHH
Q psy4650         191 -------------------------KVGREEPAVSMDVNGCKIIWARHSEVQQANLKTMPEV--FENITAGVVLTLSVHV  243 (381)
Q Consensus       191 -------------------------~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~dg~~l~~~~~d  243 (381)
                                               ..++.+.+..||..+|.-........+..++.+-...  .+|...|..|.++..|
T Consensus       351 ~f~~nlsgh~~iintl~~nsD~v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~ead  430 (460)
T KOG0285|consen  351 EFLQNLSGHNAIINTLSVNSDGVLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEAD  430 (460)
T ss_pred             chhhccccccceeeeeeeccCceEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCC
Confidence                                     1233445566777666655555444444444442221  2556678888888888


Q ss_pred             HHHhccCC
Q psy4650         244 TIKYRLDI  251 (381)
Q Consensus       244 ~~~~~~d~  251 (381)
                      ..+.+|.-
T Consensus       431 KtIk~~ke  438 (460)
T KOG0285|consen  431 KTIKMYKE  438 (460)
T ss_pred             cceEEEec
Confidence            88777653

>KOG0319|consensus

Probab=99.91  E-value=2.6e-23  Score=188.82  Aligned_cols=194  Identities=19%  Similarity=0.257  Sum_probs=160.0

Q ss_pred             eeeecCCCceEEEEEecCCeEEEecCCCc---cceee----EeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECC
Q psy4650          38 DITTNKDMIEYKISYQESSRVKAFNPIQV---ATLIL----KTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQ  110 (381)
Q Consensus        38 ~i~~~~~~~~~~~s~~~d~~v~i~~~~~~---~~~~~----~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~  110 (381)
                      ++.....+..+++++|.|.++++|++...   ...+.    .+...|...|+|++++|+..  ++||||.|++.++|++.
T Consensus       416 ava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndk--LiAT~SqDktaKiW~le  493 (775)
T KOG0319|consen  416 AVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDK--LIATGSQDKTAKIWDLE  493 (775)
T ss_pred             eeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCc--eEEecccccceeeeccc
Confidence            44455666889999999999999998541   11111    23457999999999999665  99999999999999999


Q ss_pred             CCeEEEEeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCCCeEEE
Q psy4650         111 NKTCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLL  190 (381)
Q Consensus       111 ~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i  190 (381)
                      ......++.||+.+|.|+.|+|....++++|.|++|+||.+.+..++.++.+|+..|..+.|-.+|+.|++++.||.+++
T Consensus       494 ~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKl  573 (775)
T KOG0319|consen  494 QLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKL  573 (775)
T ss_pred             CceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EecC-CCceEEEecCCCEEEEEecCceeecccccCCccccccCCceEEeeehHHHHHhccC
Q psy4650         191 KVGR-EEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSVHVTIKYRLD  250 (381)
Q Consensus       191 ~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~d~~~~~~d  250 (381)
                      |+.. .....++|.+..+ +|.+..                ++.+..+++++.|++...|.
T Consensus       574 Wnikt~eC~~tlD~H~Dr-vWaL~~----------------~~~~~~~~tgg~Dg~i~~wk  617 (775)
T KOG0319|consen  574 WNIKTNECEMTLDAHNDR-VWALSV----------------SPLLDMFVTGGGDGRIIFWK  617 (775)
T ss_pred             Eeccchhhhhhhhhccce-eEEEee----------------cCccceeEecCCCeEEEEee
Confidence            7644 3445566665444 565432                35556666777776666653

>PTZ00421 coronin; Provisional

Probab=99.91  E-value=1.4e-22  Score=188.14  Aligned_cols=202  Identities=13%  Similarity=0.101  Sum_probs=153.3

Q ss_pred             ceeeeecCCCceEEEEEecCCeEEEecCCCcc-----ceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECC
Q psy4650          36 KVDITTNKDMIEYKISYQESSRVKAFNPIQVA-----TLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQ  110 (381)
Q Consensus        36 ~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~-----~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~  110 (381)
                      ..++.+++....++++|+.|++|++|++....     ...+..+.+|...|.+++|+|++. ++|++|+.|++|++||+.
T Consensus        78 V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~-~iLaSgs~DgtVrIWDl~  156 (493)
T PTZ00421         78 IIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAM-NVLASAGADMVVNVWDVE  156 (493)
T ss_pred             EEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCC-CEEEEEeCCCEEEEEECC
Confidence            45677777446699999999999999985421     135678899999999999999764 389999999999999999


Q ss_pred             CCeEEEEeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEecCCcc-eEEEEEcCCCCEEEEEe----CC
Q psy4650         111 NKTCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLER-VWTISSLKGSNNVAIGY----DE  185 (381)
Q Consensus       111 ~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~-v~~v~~~~~~~~l~~~~----~d  185 (381)
                      ++..+..+.+|...|.+++|+|++.++++++.|++|++||+++++.+..+.+|.+. +..+.|.+++..+++++    .|
T Consensus       157 tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~D  236 (493)
T PTZ00421        157 RGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQ  236 (493)
T ss_pred             CCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCC
Confidence            99999999999999999999999999999999999999999999999888888654 45678888877766554    47


Q ss_pred             CeEEEEecCCCceEEEecCCCE-EEEEecCceeecccccCCccccccCCceEEeeeh-HHHHHhccCCCc
Q psy4650         186 GSVLLKVGREEPAVSMDVNGCK-IIWARHSEVQQANLKTMPEVFENITAGVVLTLSV-HVTIKYRLDISD  253 (381)
Q Consensus       186 g~v~i~~~~~~~~~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~-~d~~~~~~d~~~  253 (381)
                      +.+++          ||.++.. ++.....+     .........|++|+..+++++ .|+.++.|++..
T Consensus       237 r~Vkl----------WDlr~~~~p~~~~~~d-----~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~  291 (493)
T PTZ00421        237 RQIML----------WDTRKMASPYSTVDLD-----QSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMN  291 (493)
T ss_pred             CeEEE----------EeCCCCCCceeEeccC-----CCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeC
Confidence            88998          5554322 11111000     000001123567888887776 477777787754

>KOG0291|consensus

Probab=99.90  E-value=1e-22  Score=185.34  Aligned_cols=210  Identities=20%  Similarity=0.271  Sum_probs=157.0

Q ss_pred             eeeecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCC------
Q psy4650          38 DITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQN------  111 (381)
Q Consensus        38 ~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~------  111 (381)
                      .+...+| +.++++|+.||+|++||..  +..+..++..|+..|+.+.|+..+.  .++++|-||+|+.||+..      
T Consensus       355 ~l~YSpD-gq~iaTG~eDgKVKvWn~~--SgfC~vTFteHts~Vt~v~f~~~g~--~llssSLDGtVRAwDlkRYrNfRT  429 (893)
T KOG0291|consen  355 SLAYSPD-GQLIATGAEDGKVKVWNTQ--SGFCFVTFTEHTSGVTAVQFTARGN--VLLSSSLDGTVRAWDLKRYRNFRT  429 (893)
T ss_pred             eEEECCC-CcEEEeccCCCcEEEEecc--CceEEEEeccCCCceEEEEEEecCC--EEEEeecCCeEEeeeecccceeee
Confidence            4455666 5699999999999999986  6789999999999999999999776  899999999999999864      


Q ss_pred             --------------------------------------CeEEEEeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCC
Q psy4650         112 --------------------------------------KTCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGT  153 (381)
Q Consensus       112 --------------------------------------~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~  153 (381)
                                                            |+.+-.+.||++||.+++|+|.+..|+++++|++|++||+-.
T Consensus       430 ft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~  509 (893)
T KOG0291|consen  430 FTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFS  509 (893)
T ss_pred             ecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeec
Confidence                                                  333444679999999999999999999999999999999865


Q ss_pred             CeeeEEEecCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCc-eEEEec----CCCEEEEEecCceeecccccCCccc
Q psy4650         154 HRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKVGREEP-AVSMDV----NGCKIIWARHSEVQQANLKTMPEVF  228 (381)
Q Consensus       154 ~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~~~~~~-~~~~d~----~~~~~~~~~~~~~~~~~~~~~~~~~  228 (381)
                      ......--.....+..++|+|+|+.++++..||.+.+|+..+.. +.+.|.    .+|+.--+.........-+.+.. +
T Consensus       510 s~~~vEtl~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftt-i  588 (893)
T KOG0291|consen  510 SSGTVETLEIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTT-I  588 (893)
T ss_pred             cCceeeeEeeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEE-E
Confidence            53333323366789999999999999999999999997654322 222222    22222111111111111111121 5


Q ss_pred             cccCCceEEeeehHHHHHhccCCCc
Q psy4650         229 ENITAGVVLTLSVHVTIKYRLDISD  253 (381)
Q Consensus       229 ~~~~dg~~l~~~~~d~~~~~~d~~~  253 (381)
                      ++++||..+..++..+.+.++++.+
T Consensus       589 ~ySaDG~~IlAgG~sn~iCiY~v~~  613 (893)
T KOG0291|consen  589 CYSADGKCILAGGESNSICIYDVPE  613 (893)
T ss_pred             EEcCCCCEEEecCCcccEEEEECch
Confidence            7899999999999888777777654

>KOG0284|consensus

Probab=99.90  E-value=7.2e-24  Score=180.12  Aligned_cols=212  Identities=17%  Similarity=0.214  Sum_probs=172.2

Q ss_pred             hcceeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCe
Q psy4650          34 ETKVDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKT  113 (381)
Q Consensus        34 ~~~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~  113 (381)
                      .-.+.+...++ +.-|++|+..|...+|+...  -.....+++|..+|.++.|++++.  +++||+.+|.|++|+..-..
T Consensus        97 c~V~~v~WtPe-GRRLltgs~SGEFtLWNg~~--fnFEtilQaHDs~Vr~m~ws~~g~--wmiSgD~gG~iKyWqpnmnn  171 (464)
T KOG0284|consen   97 CPVNVVRWTPE-GRRLLTGSQSGEFTLWNGTS--FNFETILQAHDSPVRTMKWSHNGT--WMISGDKGGMIKYWQPNMNN  171 (464)
T ss_pred             cceeeEEEcCC-CceeEeecccccEEEecCce--eeHHHHhhhhcccceeEEEccCCC--EEEEcCCCceEEecccchhh
Confidence            34456677776 55788999999999999732  222334679999999999999887  89999999999999986544


Q ss_pred             EEEEeccCC-CCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCCCeEEEEe
Q psy4650         114 CVQTLEGHG-QNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKV  192 (381)
Q Consensus       114 ~~~~~~~~~-~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~  192 (381)
                       +..+..|. ..|.+++|+|+...+++|+.||+|+|||....+....+.+|...|.++.|+|.-..+++|+.|..|++  
T Consensus       172 -Vk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKl--  248 (464)
T KOG0284|consen  172 -VKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKL--  248 (464)
T ss_pred             -hHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEe--
Confidence             44555554 89999999999999999999999999999999988899999999999999999999999999999999  


Q ss_pred             cCCCceEEEecCCCEEEEEecCceeecccccCCccccccCCceEEeeehHHHHHhccCCCcChhHHHHHHHHHhhh
Q psy4650         193 GREEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSVHVTIKYRLDISDSHRSVAKLRAAAETC  268 (381)
Q Consensus       193 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~d~~~~~~d~~~~~~~~~~l~~~~e~a  268 (381)
                              ||+++|.++..+..+...  +.+    ..|++++.+|++++.|....++|++ .-+.++.++.+...+
T Consensus       249 --------WDprSg~cl~tlh~HKnt--Vl~----~~f~~n~N~Llt~skD~~~kv~DiR-~mkEl~~~r~Hkkdv  309 (464)
T KOG0284|consen  249 --------WDPRSGSCLATLHGHKNT--VLA----VKFNPNGNWLLTGSKDQSCKVFDIR-TMKELFTYRGHKKDV  309 (464)
T ss_pred             --------ecCCCcchhhhhhhccce--EEE----EEEcCCCCeeEEccCCceEEEEehh-HhHHHHHhhcchhhh
Confidence                    999999887665543221  111    4678999999999999999999987 334556666554433

>KOG0295|consensus

Probab=99.90  E-value=3.6e-23  Score=173.49  Aligned_cols=208  Identities=18%  Similarity=0.248  Sum_probs=176.4

Q ss_pred             ecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCC-CeEEEEec
Q psy4650          41 TNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQN-KTCVQTLE  119 (381)
Q Consensus        41 ~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~-~~~~~~~~  119 (381)
                      ..|. ..+.++++.|.++++||..+  ..+...|+||++.|.+++|+..|.  ++++|+.|-.+++||..+ -.++....
T Consensus       116 ~hp~-~~~v~~as~d~tikv~D~~t--g~~e~~LrGHt~sv~di~~~a~Gk--~l~tcSsDl~~~LWd~~~~~~c~ks~~  190 (406)
T KOG0295|consen  116 FHPS-EALVVSASEDATIKVFDTET--GELERSLRGHTDSVFDISFDASGK--YLATCSSDLSAKLWDFDTFFRCIKSLI  190 (406)
T ss_pred             eccC-ceEEEEecCCceEEEEEccc--hhhhhhhhccccceeEEEEecCcc--EEEecCCccchhheeHHHHHHHHHHhc
Confidence            4454 55788899999999999984  455889999999999999988765  899999999999999977 45677888


Q ss_pred             cCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCC----
Q psy4650         120 GHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKVGRE----  195 (381)
Q Consensus       120 ~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~~~~----  195 (381)
                      +|...|.++.|-|.|.++++++.|.+|+.|++.+|.+++++.+|+..|..+..+.+|..+|+++.|.++++|....    
T Consensus       191 gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k  270 (406)
T KOG0295|consen  191 GHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCK  270 (406)
T ss_pred             CcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhh
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999987211    


Q ss_pred             ----------------------------------CceEEEecCCCEEEEEecCceeecccccCCcc---ccccCCceEEe
Q psy4650         196 ----------------------------------EPAVSMDVNGCKIIWARHSEVQQANLKTMPEV---FENITAGVVLT  238 (381)
Q Consensus       196 ----------------------------------~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~dg~~l~  238 (381)
                                                        ....+-..+....+|++....+...+.++..+   .+|+|.|++++
T Consensus       271 ~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~  350 (406)
T KOG0295|consen  271 AELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYIL  350 (406)
T ss_pred             hhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEE
Confidence                                              11222223334556777777777777777665   68899999999


Q ss_pred             eehHHHHHhccCCCc
Q psy4650         239 LSVHVTIKYRLDISD  253 (381)
Q Consensus       239 ~~~~d~~~~~~d~~~  253 (381)
                      ++.+|+..+.||+..
T Consensus       351 ScaDDktlrvwdl~~  365 (406)
T KOG0295|consen  351 SCADDKTLRVWDLKN  365 (406)
T ss_pred             EEecCCcEEEEEecc
Confidence            999999999999864

>KOG0273|consensus

Probab=99.90  E-value=8.5e-23  Score=176.60  Aligned_cols=192  Identities=20%  Similarity=0.258  Sum_probs=157.7

Q ss_pred             eeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEE
Q psy4650          37 VDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQ  116 (381)
Q Consensus        37 ~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~  116 (381)
                      .+|....+  .-+++.+.|+.++++-+..  ..+..++.||.+.|.++.|.|.+.  +|+|||.|+++++|.........
T Consensus       322 lDVdW~~~--~~F~ts~td~~i~V~kv~~--~~P~~t~~GH~g~V~alk~n~tg~--LLaS~SdD~TlkiWs~~~~~~~~  395 (524)
T KOG0273|consen  322 LDVDWQSN--DEFATSSTDGCIHVCKVGE--DRPVKTFIGHHGEVNALKWNPTGS--LLASCSDDGTLKIWSMGQSNSVH  395 (524)
T ss_pred             cceEEecC--ceEeecCCCceEEEEEecC--CCcceeeecccCceEEEEECCCCc--eEEEecCCCeeEeeecCCCcchh
Confidence            34555443  2478889999999999863  566789999999999999999777  89999999999999999888899


Q ss_pred             EeccCCCCEEEEEEecCCC---------EEEEEeCCCCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCCCe
Q psy4650         117 TLEGHGQNISAVCFHPELP---------IVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGS  187 (381)
Q Consensus       117 ~~~~~~~~v~~~~~~p~~~---------~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~  187 (381)
                      .+.+|...|..+.|+|+|+         .+++++.|++|++||+..|.++.++..|..+|++++|+|+|+++|+|+.||.
T Consensus       396 ~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~  475 (524)
T KOG0273|consen  396 DLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGC  475 (524)
T ss_pred             hhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCe
Confidence            9999999999999999765         6899999999999999999999999999999999999999999999999999


Q ss_pred             EEEEecCCCceEEEecCCCEEEEEecCceeecccccCCccccccCCceEEeeehHHHHHhccCC
Q psy4650         188 VLLKVGREEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSVHVTIKYRLDI  251 (381)
Q Consensus       188 v~i~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~d~~~~~~d~  251 (381)
                      +.+          |+..+++.+........       ...+.|+.+|..+.....++.....|+
T Consensus       476 V~i----------ws~~~~~l~~s~~~~~~-------Ifel~Wn~~G~kl~~~~sd~~vcvldl  522 (524)
T KOG0273|consen  476 VHI----------WSTKTGKLVKSYQGTGG-------IFELCWNAAGDKLGACASDGSVCVLDL  522 (524)
T ss_pred             eEe----------ccccchheeEeecCCCe-------EEEEEEcCCCCEEEEEecCCCceEEEe
Confidence            999          66666665544332211       111456667777777777666655554

>KOG0295|consensus

Probab=99.90  E-value=1.5e-22  Score=169.76  Aligned_cols=192  Identities=15%  Similarity=0.198  Sum_probs=157.9

Q ss_pred             eeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEE
Q psy4650          37 VDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQ  116 (381)
Q Consensus        37 ~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~  116 (381)
                      .++.+-|. +.++++++.|.+|++|+..  ..-++.++.+|.+.|..++.+.||.  .+++|+.|.+|++|-..++.+..
T Consensus       197 S~V~f~P~-gd~ilS~srD~tik~We~~--tg~cv~t~~~h~ewvr~v~v~~DGt--i~As~s~dqtl~vW~~~t~~~k~  271 (406)
T KOG0295|consen  197 SSVFFLPL-GDHILSCSRDNTIKAWECD--TGYCVKTFPGHSEWVRMVRVNQDGT--IIASCSNDQTLRVWVVATKQCKA  271 (406)
T ss_pred             eeEEEEec-CCeeeecccccceeEEecc--cceeEEeccCchHhEEEEEecCCee--EEEecCCCceEEEEEeccchhhh
Confidence            45555665 4799999999999999997  4678899999999999999988776  89999999999999999999999


Q ss_pred             EeccCCCCEEEEEEecC----------C-----CEEEEEeCCCCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEE
Q psy4650         117 TLEGHGQNISAVCFHPE----------L-----PIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAI  181 (381)
Q Consensus       117 ~~~~~~~~v~~~~~~p~----------~-----~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~  181 (381)
                      .+.+|..+|.|++|.|.          +     +++.+++.|++|++||+.+|.++.++.+|...|..++|+|.|+++++
T Consensus       272 ~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~S  351 (406)
T KOG0295|consen  272 ELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILS  351 (406)
T ss_pred             hhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEE
Confidence            99999999999999873          2     47899999999999999999999999999999999999999999999


Q ss_pred             EeCCCeEEEEecCCCceEEEecCCCEEEEEecCceeecccccCCccccccCCceEEeeehHHHHHhcc
Q psy4650         182 GYDEGSVLLKVGREEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSVHVTIKYRL  249 (381)
Q Consensus       182 ~~~dg~v~i~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~d~~~~~~  249 (381)
                      +.+|+++++          ||..++.+.-....+.+-....      +|..+.-++.+|+-+.....|
T Consensus       352 caDDktlrv----------wdl~~~~cmk~~~ah~hfvt~l------Dfh~~~p~VvTGsVdqt~Kvw  403 (406)
T KOG0295|consen  352 CADDKTLRV----------WDLKNLQCMKTLEAHEHFVTSL------DFHKTAPYVVTGSVDQTVKVW  403 (406)
T ss_pred             EecCCcEEE----------EEeccceeeeccCCCcceeEEE------ecCCCCceEEeccccceeeee
Confidence            999999999          7776666543333222222222      223344577777776665554

>KOG0315|consensus

Probab=99.90  E-value=3.4e-22  Score=159.71  Aligned_cols=204  Identities=17%  Similarity=0.200  Sum_probs=162.0

Q ss_pred             CCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCe--EEEEeccC
Q psy4650          44 DMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKT--CVQTLEGH  121 (381)
Q Consensus        44 ~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~--~~~~~~~~  121 (381)
                      +...+|++++.|.+|++|...  ...+.++++...+.|+.+...|++.  .|+.++ ...||+||+.+++  ++.++.+|
T Consensus         8 d~~viLvsA~YDhTIRfWqa~--tG~C~rTiqh~dsqVNrLeiTpdk~--~LAaa~-~qhvRlyD~~S~np~Pv~t~e~h   82 (311)
T KOG0315|consen    8 DDPVILVSAGYDHTIRFWQAL--TGICSRTIQHPDSQVNRLEITPDKK--DLAAAG-NQHVRLYDLNSNNPNPVATFEGH   82 (311)
T ss_pred             CCceEEEeccCcceeeeeehh--cCeEEEEEecCccceeeEEEcCCcc--hhhhcc-CCeeEEEEccCCCCCceeEEecc
Confidence            456799999999999999987  5678899987788999999999766  565554 6789999999875  68999999


Q ss_pred             CCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCC------
Q psy4650         122 GQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKVGRE------  195 (381)
Q Consensus       122 ~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~~~~------  195 (381)
                      +..|.++.|..+|+.+++||+||+++|||++...+-+.+. +..+|+++..+|+...|++|..+|.|++|+-..      
T Consensus        83 ~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~  161 (311)
T KOG0315|consen   83 TKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHE  161 (311)
T ss_pred             CCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccc
Confidence            9999999999999999999999999999999855544444 669999999999999999999999999998221      


Q ss_pred             ------Cce------------EEEecCCCEEEEEecCceeecc------cccCC---ccccccCCceEEeeehHHHHHhc
Q psy4650         196 ------EPA------------VSMDVNGCKIIWARHSEVQQAN------LKTMP---EVFENITAGVVLTLSVHVTIKYR  248 (381)
Q Consensus       196 ------~~~------------~~~d~~~~~~~~~~~~~~~~~~------~~~~~---~~~~~~~dg~~l~~~~~d~~~~~  248 (381)
                            .++            ...+..+...+|.+-.+.....      +..+.   ..+-++||+++|++++.|.+.++
T Consensus       162 liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~i  241 (311)
T KOG0315|consen  162 LIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKI  241 (311)
T ss_pred             cCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEE
Confidence                  111            2223334556777654332222      22222   22678999999999999999999


Q ss_pred             cCCCc
Q psy4650         249 LDISD  253 (381)
Q Consensus       249 ~d~~~  253 (381)
                      |....
T Consensus       242 wn~~~  246 (311)
T KOG0315|consen  242 WNTDD  246 (311)
T ss_pred             EecCC
Confidence            98754

>KOG0275|consensus

Probab=99.90  E-value=1.3e-23  Score=173.86  Aligned_cols=159  Identities=14%  Similarity=0.255  Sum_probs=139.6

Q ss_pred             hhcceeeeecCCCceEEEEEecCCeEEEecCCCccce------eeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEE
Q psy4650          33 RETKVDITTNKDMIEYKISYQESSRVKAFNPIQVATL------ILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKI  106 (381)
Q Consensus        33 ~~~~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~------~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~v  106 (381)
                      |.++-+..+.|+ +.|+++|+-||-|.+|+....+-.      ..-.+--|.++|.|+.|+.+.+  .+++|+.||.|++
T Consensus       213 KSh~EcA~FSPD-gqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsE--MlAsGsqDGkIKv  289 (508)
T KOG0275|consen  213 KSHVECARFSPD-GQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSE--MLASGSQDGKIKV  289 (508)
T ss_pred             ccchhheeeCCC-CceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHH--HhhccCcCCcEEE
Confidence            345556667777 679999999999999998542211      1122334789999999999877  8999999999999


Q ss_pred             EECCCCeEEEEec-cCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCC
Q psy4650         107 WDYQNKTCVQTLE-GHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDE  185 (381)
Q Consensus       107 wd~~~~~~~~~~~-~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d  185 (381)
                      |.+.+|.+++.|. .|+.+|+|+.|+.++..+++++.|.++++-.+.+|+++..+.+|++.|+.+.|.++|..+++++.|
T Consensus       290 Wri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsD  369 (508)
T KOG0275|consen  290 WRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSD  369 (508)
T ss_pred             EEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCC
Confidence            9999999999985 899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CeEEEEecC
Q psy4650         186 GSVLLKVGR  194 (381)
Q Consensus       186 g~v~i~~~~  194 (381)
                      |++++|.+.
T Consensus       370 gtvkvW~~K  378 (508)
T KOG0275|consen  370 GTVKVWHGK  378 (508)
T ss_pred             ccEEEecCc
Confidence            999999853

>KOG0277|consensus

Probab=99.90  E-value=1.4e-22  Score=162.42  Aligned_cols=214  Identities=16%  Similarity=0.222  Sum_probs=168.6

Q ss_pred             cceeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeE
Q psy4650          35 TKVDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTC  114 (381)
Q Consensus        35 ~~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~  114 (381)
                      .-+++...+.....+++++.||++++||... +..+++.++.|...|.++.|++-... .++++|.|++|++|+...++.
T Consensus        62 ~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~-~s~Pi~~~kEH~~EV~Svdwn~~~r~-~~ltsSWD~TiKLW~~~r~~S  139 (311)
T KOG0277|consen   62 GLFDVAWSENHENQVIAASGDGSLRLFDLTM-PSKPIHKFKEHKREVYSVDWNTVRRR-IFLTSSWDGTIKLWDPNRPNS  139 (311)
T ss_pred             ceeEeeecCCCcceEEEEecCceEEEeccCC-CCcchhHHHhhhhheEEeccccccce-eEEeeccCCceEeecCCCCcc
Confidence            3478888888888999999999999999654 56788999999999999999986554 566779999999999999999


Q ss_pred             EEEeccCCCCEEEEEEecC-CCEEEEEeCCCCEEEEeCCCCeeeEEEecCCcceEEEEEcC-CCCEEEEEeCCCeEEEEe
Q psy4650         115 VQTLEGHGQNISAVCFHPE-LPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLK-GSNNVAIGYDEGSVLLKV  192 (381)
Q Consensus       115 ~~~~~~~~~~v~~~~~~p~-~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~-~~~~l~~~~~dg~v~i~~  192 (381)
                      ++++.||..-|....|+|. ...+++++.|+++++||++.......+..|...+.++.|+. +...+++|+.|+.++.  
T Consensus       140 v~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~--  217 (311)
T KOG0277|consen  140 VQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRG--  217 (311)
T ss_pred             eEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEE--
Confidence            9999999999999999995 45999999999999999986554555888999999999986 5678999999999999  


Q ss_pred             cCCCceEEEecCCCE-EEEEecCceeecccccCCccccccCC-ceEEeeehHHHHHhccCCCcChhHHHHHHHHHh
Q psy4650         193 GREEPAVSMDVNGCK-IIWARHSEVQQANLKTMPEVFENITA-GVVLTLSVHVTIKYRLDISDSHRSVAKLRAAAE  266 (381)
Q Consensus       193 ~~~~~~~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d-g~~l~~~~~d~~~~~~d~~~~~~~~~~l~~~~e  266 (381)
                              ||.+.-+ ++..+..+..     ++.. +.|+|. ...|++++.|.+..+|+......++.+...+.|
T Consensus       218 --------wDir~~r~pl~eL~gh~~-----AVRk-vk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtE  279 (311)
T KOG0277|consen  218 --------WDIRNLRTPLFELNGHGL-----AVRK-VKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTE  279 (311)
T ss_pred             --------EehhhccccceeecCCce-----EEEE-EecCcchhhHhhhccccceEEecccccchhhhhhhhccce
Confidence                    5554322 2332221110     0011 355665 577889999999999999876666555554443

>KOG0291|consensus

Probab=99.90  E-value=3e-22  Score=182.28  Aligned_cols=194  Identities=19%  Similarity=0.197  Sum_probs=150.3

Q ss_pred             eecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEEEec
Q psy4650          40 TTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE  119 (381)
Q Consensus        40 ~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~  119 (381)
                      ..+..+.=+-+.++.-|.+.+|+..  ....+...+||...+++++++|||+  ++++|+.||.|+|||..++-|..+|.
T Consensus       314 ~~N~tGDWiA~g~~klgQLlVweWq--sEsYVlKQQgH~~~i~~l~YSpDgq--~iaTG~eDgKVKvWn~~SgfC~vTFt  389 (893)
T KOG0291|consen  314 SFNSTGDWIAFGCSKLGQLLVWEWQ--SESYVLKQQGHSDRITSLAYSPDGQ--LIATGAEDGKVKVWNTQSGFCFVTFT  389 (893)
T ss_pred             EecccCCEEEEcCCccceEEEEEee--ccceeeeccccccceeeEEECCCCc--EEEeccCCCcEEEEeccCceEEEEec
Confidence            3343333233445556899999985  3455667789999999999999998  89999999999999999999999999


Q ss_pred             cCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCC--------------------------------------------e
Q psy4650         120 GHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTH--------------------------------------------R  155 (381)
Q Consensus       120 ~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~--------------------------------------------~  155 (381)
                      .|+..|+.+.|+..|..+++.+-||+|+.||+..+                                            +
T Consensus       390 eHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGq  469 (893)
T KOG0291|consen  390 EHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQ  469 (893)
T ss_pred             cCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCe
Confidence            99999999999999999999999999999987633                                            2


Q ss_pred             eeEEEecCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCceEEEecCCCEEEEEecCceeecccccCCccccccCCce
Q psy4650         156 LEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKVGREEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGV  235 (381)
Q Consensus       156 ~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~  235 (381)
                      .+-.+.+|.++|.+++|+|.+..|+++|.|.+|++|+.-       +..+.....         .+..-...+.|.|||.
T Consensus       470 llDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if-------~s~~~vEtl---------~i~sdvl~vsfrPdG~  533 (893)
T KOG0291|consen  470 LLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIF-------SSSGTVETL---------EIRSDVLAVSFRPDGK  533 (893)
T ss_pred             eeehhcCCCCcceeeEEccccCeEEeccccceEEEEEee-------ccCceeeeE---------eeccceeEEEEcCCCC
Confidence            333445889999999999999999999999999995411       111111111         1111111257889999


Q ss_pred             EEeeehHHHHHhccCCCc
Q psy4650         236 VLTLSVHVTIKYRLDISD  253 (381)
Q Consensus       236 ~l~~~~~d~~~~~~d~~~  253 (381)
                      .++++.-++.+..||...
T Consensus       534 elaVaTldgqItf~d~~~  551 (893)
T KOG0291|consen  534 ELAVATLDGQITFFDIKE  551 (893)
T ss_pred             eEEEEEecceEEEEEhhh
Confidence            999999998888888754

>KOG0273|consensus

Probab=99.90  E-value=8.7e-22  Score=170.39  Aligned_cols=207  Identities=18%  Similarity=0.175  Sum_probs=170.2

Q ss_pred             eecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEEEec
Q psy4650          40 TTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE  119 (381)
Q Consensus        40 ~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~  119 (381)
                      ..+.+ +..|++|+.||.+++|+.   ....+.+|..|.++|.++.|+..|+  +|++++.|+++.+||..++...+.+.
T Consensus       242 ~Wn~~-G~~LatG~~~G~~riw~~---~G~l~~tl~~HkgPI~slKWnk~G~--yilS~~vD~ttilwd~~~g~~~q~f~  315 (524)
T KOG0273|consen  242 DWNND-GTLLATGSEDGEARIWNK---DGNLISTLGQHKGPIFSLKWNKKGT--YILSGGVDGTTILWDAHTGTVKQQFE  315 (524)
T ss_pred             EecCC-CCeEEEeecCcEEEEEec---CchhhhhhhccCCceEEEEEcCCCC--EEEeccCCccEEEEeccCceEEEeee
Confidence            34444 669999999999999997   4567788999999999999998777  99999999999999999999999999


Q ss_pred             cCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCC----
Q psy4650         120 GHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKVGRE----  195 (381)
Q Consensus       120 ~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~~~~----  195 (381)
                      -|..+...+.|-.+ ..+++++.|+.|+|+.+....+..++.+|.+.|.++.|.|.|.+|+++++|+++++|....    
T Consensus       316 ~~s~~~lDVdW~~~-~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~  394 (524)
T KOG0273|consen  316 FHSAPALDVDWQSN-DEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSV  394 (524)
T ss_pred             eccCCccceEEecC-ceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcch
Confidence            99988788999643 4688999999999999999999999999999999999999999999999999999997211    


Q ss_pred             ---------------------------C-ceEEEecCCCEEEEEecCceeecccccCCc---cccccCCceEEeeehHHH
Q psy4650         196 ---------------------------E-PAVSMDVNGCKIIWARHSEVQQANLKTMPE---VFENITAGVVLTLSVHVT  244 (381)
Q Consensus       196 ---------------------------~-~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~dg~~l~~~~~d~  244 (381)
                                                 + .+.+-..++...+|++....+...+..|..   .++|+|+|+++++++-++
T Consensus       395 ~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg  474 (524)
T KOG0273|consen  395 HDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDG  474 (524)
T ss_pred             hhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCC
Confidence                                       1 112222234455566655555555533321   268999999999999999


Q ss_pred             HHhccCCCc
Q psy4650         245 IKYRLDISD  253 (381)
Q Consensus       245 ~~~~~d~~~  253 (381)
                      .++.|+...
T Consensus       475 ~V~iws~~~  483 (524)
T KOG0273|consen  475 CVHIWSTKT  483 (524)
T ss_pred             eeEeccccc
Confidence            999998764

>KOG0281|consensus

Probab=99.89  E-value=4e-23  Score=172.36  Aligned_cols=238  Identities=17%  Similarity=0.210  Sum_probs=181.9

Q ss_pred             cccccCCChhhHHHHhhhcceeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEE
Q psy4650          17 RALNTELTETDIETIVRETKVDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLI   96 (381)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~   96 (381)
                      |.+-.++.++..   .....|+++.+.   +.+++|..|++|++||..  ...++..|.||++.|.|+.|..    +.++
T Consensus       184 r~~~~rinc~Se---~skgVYClQYDD---~kiVSGlrDnTikiWD~n--~~~c~~~L~GHtGSVLCLqyd~----rvii  251 (499)
T KOG0281|consen  184 RHLLQRINCRSE---NSKGVYCLQYDD---EKIVSGLRDNTIKIWDKN--SLECLKILTGHTGSVLCLQYDE----RVIV  251 (499)
T ss_pred             ceeeeeecCCcc---cCCceEEEEecc---hhhhcccccCceEEeccc--cHHHHHhhhcCCCcEEeeeccc----eEEE
Confidence            334444444432   223345555543   368999999999999986  4677889999999999999953    4899


Q ss_pred             EEcCCCeEEEEECCCCeEEEEeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCe---eeEEEecCCcceEEEEEc
Q psy4650          97 SGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHR---LEISLTYGLERVWTISSL  173 (381)
Q Consensus        97 s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~---~~~~~~~~~~~v~~v~~~  173 (381)
                      +||.|.+|++||..+|+++.++-+|...|..+.|+  ..++++++.|.++.+||+....   +...+.+|...|+.+.|+
T Consensus       252 sGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd  329 (499)
T KOG0281|consen  252 SGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD  329 (499)
T ss_pred             ecCCCceEEEEeccCCchhhHHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc
Confidence            99999999999999999999999999999999996  4589999999999999998654   234567899999999997


Q ss_pred             CCCCEEEEEeCCCeEEEEecCCCceEEEecCCCEEEEEecCceeecccccCCccccccCCceEEeeehHHHHHhccCCCc
Q psy4650         174 KGSNNVAIGYDEGSVLLKVGREEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSVHVTIKYRLDISD  253 (381)
Q Consensus       174 ~~~~~l~~~~~dg~v~i~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~d~~~~~~d~~~  253 (381)
                      .  +++++++.|.++++          |+..++..+-.+..+..  .+..      ..-.|+.+++++.|.++..||...
T Consensus       330 ~--kyIVsASgDRTikv----------W~~st~efvRtl~gHkR--GIAC------lQYr~rlvVSGSSDntIRlwdi~~  389 (499)
T KOG0281|consen  330 D--KYIVSASGDRTIKV----------WSTSTCEFVRTLNGHKR--GIAC------LQYRDRLVVSGSSDNTIRLWDIEC  389 (499)
T ss_pred             c--ceEEEecCCceEEE----------Eeccceeeehhhhcccc--ccee------hhccCeEEEecCCCceEEEEeccc
Confidence            4  59999999999999          77877776654433321  1111      123689999999999999999875


Q ss_pred             ChhHHHHHHHHHhh-------hhhhccccceeeEEEecccCCc
Q psy4650         254 SHRSVAKLRAAAET-------CMHVLSTLQSSNVFVESLYDGL  289 (381)
Q Consensus       254 ~~~~~~~l~~~~e~-------ak~~lS~~~~~~i~~~~l~~g~  289 (381)
                      . ..+..|..+.|-       .|++.|..-.+.|.++.+..+.
T Consensus       390 G-~cLRvLeGHEeLvRciRFd~krIVSGaYDGkikvWdl~aal  431 (499)
T KOG0281|consen  390 G-ACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLQAAL  431 (499)
T ss_pred             c-HHHHHHhchHHhhhheeecCceeeeccccceEEEEeccccc
Confidence            4 344555555443       3667788888888888775554

>KOG0283|consensus

Probab=99.89  E-value=1.5e-22  Score=186.91  Aligned_cols=217  Identities=15%  Similarity=0.225  Sum_probs=159.7

Q ss_pred             HhhhcceeeeecCCCceEEEEEecCCeEEEecCCC----------------------------c----------------
Q psy4650          31 IVRETKVDITTNKDMIEYKISYQESSRVKAFNPIQ----------------------------V----------------   66 (381)
Q Consensus        31 ~~~~~~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~----------------------------~----------------   66 (381)
                      ..+...+++-+.++ +.|+++|+.|+.|+||.+.+                            .                
T Consensus       265 ah~gaIw~mKFS~D-GKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~  343 (712)
T KOG0283|consen  265 AHKGAIWAMKFSHD-GKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGS  343 (712)
T ss_pred             ccCCcEEEEEeCCC-CceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccccccc
Confidence            33445567777777 77999999999999997643                            0                


Q ss_pred             --------------cceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEEEeccCCCCEEEEEEec
Q psy4650          67 --------------ATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHP  132 (381)
Q Consensus        67 --------------~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~p  132 (381)
                                    ...++..++||.+.|.++.|+.++   +|+++|.|++||+|++....++..|. |.+.|+|++|+|
T Consensus       344 ~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~---fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnP  419 (712)
T KOG0283|consen  344 QSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN---FLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNP  419 (712)
T ss_pred             CCccccCCCccccccccchhhhhccchhheecccccCC---eeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecc
Confidence                          011345667899999999999743   79999999999999999999999998 999999999999


Q ss_pred             -CCCEEEEEeCCCCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCc--------------
Q psy4650         133 -ELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKVGREEP--------------  197 (381)
Q Consensus       133 -~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~~~~~~--------------  197 (381)
                       |.+++++|+-|+.+|||++...+.+.-.. -..-|++++|.|+|+..+.|+-+|.++++...+..              
T Consensus       420 vDDryFiSGSLD~KvRiWsI~d~~Vv~W~D-l~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk  498 (712)
T KOG0283|consen  420 VDDRYFISGSLDGKVRLWSISDKKVVDWND-LRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKK  498 (712)
T ss_pred             cCCCcEeecccccceEEeecCcCeeEeehh-hhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCcc
Confidence             67799999999999999998766554444 34889999999999999999999999996533311              


Q ss_pred             ------------------eEEEecCCCEEEEEecCceeecccccCCcc-----ccccCCceEEeeehHHHHHhccCCCc
Q psy4650         198 ------------------AVSMDVNGCKIIWARHSEVQQANLKTMPEV-----FENITAGVVLTLSVHVTIKYRLDISD  253 (381)
Q Consensus       198 ------------------~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~dg~~l~~~~~d~~~~~~d~~~  253 (381)
                                        ++.-..++...+++.........+.++...     -.|+.||+++++++.|..+|+|+...
T Consensus       499 ~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~  577 (712)
T KOG0283|consen  499 KQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDS  577 (712)
T ss_pred             ccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCC
Confidence                              111112222233333222222222222211     25667888888888888888888644

>PTZ00420 coronin; Provisional

Probab=99.89  E-value=1.8e-21  Score=181.86  Aligned_cols=202  Identities=13%  Similarity=0.050  Sum_probs=146.9

Q ss_pred             ceeeeecCCCceEEEEEecCCeEEEecCCCccc------eeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEEC
Q psy4650          36 KVDITTNKDMIEYKISYQESSRVKAFNPIQVAT------LILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDY  109 (381)
Q Consensus        36 ~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~------~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~  109 (381)
                      ..++.+++....++++|+.|++|++|++.....      ..+..+.+|.+.|.+++|+|++. ..+++++.|++|++||+
T Consensus        77 V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~-~iLaSgS~DgtIrIWDl  155 (568)
T PTZ00420         77 ILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNY-YIMCSSGFDSFVNIWDI  155 (568)
T ss_pred             EEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCC-eEEEEEeCCCeEEEEEC
Confidence            456777776677999999999999999864211      23456789999999999999876 25689999999999999


Q ss_pred             CCCeEEEEeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEecCCcceEE-----EEEcCCCCEEEEEeC
Q psy4650         110 QNKTCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWT-----ISSLKGSNNVAIGYD  184 (381)
Q Consensus       110 ~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~-----v~~~~~~~~l~~~~~  184 (381)
                      .++.....+. |...|.+++|+|+|.++++++.|+.|++||++++..+..+.+|.+.+.+     ..|++++.++++++.
T Consensus       156 ~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~  234 (568)
T PTZ00420        156 ENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGF  234 (568)
T ss_pred             CCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEc
Confidence            9998777776 6678999999999999999999999999999999999999988775433     334588888888776


Q ss_pred             CC----eEEEEecCCCceEEEecCCCEEEEEecCceeecccccCCccccccCCceEEeeehHHHHHhccCCC
Q psy4650         185 EG----SVLLKVGREEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSVHVTIKYRLDIS  252 (381)
Q Consensus       185 dg----~v~i~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~d~~~~~~d~~  252 (381)
                      |+    .+++|+.+.         .+.++.....+.....+.   . +-+.++|.+++++..|..++.|++.
T Consensus       235 d~~~~R~VkLWDlr~---------~~~pl~~~~ld~~~~~L~---p-~~D~~tg~l~lsGkGD~tIr~~e~~  293 (568)
T PTZ00420        235 SKNNMREMKLWDLKN---------TTSALVTMSIDNASAPLI---P-HYDESTGLIYLIGKGDGNCRYYQHS  293 (568)
T ss_pred             CCCCccEEEEEECCC---------CCCceEEEEecCCccceE---E-eeeCCCCCEEEEEECCCeEEEEEcc
Confidence            64    688854331         122221111111000000   0 1123457777777777777777664

>PTZ00420 coronin; Provisional

Probab=99.89  E-value=1.1e-21  Score=183.33  Aligned_cols=189  Identities=13%  Similarity=0.112  Sum_probs=142.7

Q ss_pred             EecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCe--------EEEEeccCCC
Q psy4650          52 YQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKT--------CVQTLEGHGQ  123 (381)
Q Consensus        52 ~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~--------~~~~~~~~~~  123 (381)
                      |+.++.+++|++..  ...+..+.+|.+.|.+++|+|+.. .+|++|+.|++|++||+.++.        ++..+.+|..
T Consensus        50 GG~~gvI~L~~~~r--~~~v~~L~gH~~~V~~lafsP~~~-~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~  126 (568)
T PTZ00420         50 GGLIGAIRLENQMR--KPPVIKLKGHTSSILDLQFNPCFS-EILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKK  126 (568)
T ss_pred             CCceeEEEeeecCC--CceEEEEcCCCCCEEEEEEcCCCC-CEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCC
Confidence            55678899998864  346778999999999999999632 389999999999999997642        3456789999


Q ss_pred             CEEEEEEecCCCE-EEEEeCCCCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCceEEEe
Q psy4650         124 NISAVCFHPELPI-VITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKVGREEPAVSMD  202 (381)
Q Consensus       124 ~v~~~~~~p~~~~-l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~~~~~~~~~~d  202 (381)
                      .|.+++|+|++.. +++++.|++|++||+++++....+. +...|.+++|+|+|.++++++.|+.+++          ||
T Consensus       127 ~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrI----------wD  195 (568)
T PTZ00420        127 KISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHI----------ID  195 (568)
T ss_pred             cEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEE----------EE
Confidence            9999999999875 5789999999999999998877776 5578999999999999999999999999          77


Q ss_pred             cCCCEEEEEecCceeecccccCCccccccCCceEEeeehHH----HHHhccCCCcCh
Q psy4650         203 VNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSVHV----TIKYRLDISDSH  255 (381)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~d----~~~~~~d~~~~~  255 (381)
                      .+++..+.....+........... ..|++++.++++++.+    ....+||++...
T Consensus       196 ~Rsg~~i~tl~gH~g~~~s~~v~~-~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~  251 (568)
T PTZ00420        196 PRKQEIASSFHIHDGGKNTKNIWI-DGLGGDDNYILSTGFSKNNMREMKLWDLKNTT  251 (568)
T ss_pred             CCCCcEEEEEecccCCceeEEEEe-eeEcCCCCEEEEEEcCCCCccEEEEEECCCCC
Confidence            777666544432211100000000 1234677777765544    357889987533

>KOG0103|consensus

Probab=99.89  E-value=1.8e-24  Score=196.51  Aligned_cols=305  Identities=16%  Similarity=0.201  Sum_probs=207.6

Q ss_pred             CchhhhHHHhhhhhcccccccCCChhhHHHHhhhcceeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeecc----
Q psy4650           1 KSRLISQAKNTIIKNKRALNTELTETDIETIVRETKVDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYG----   76 (381)
Q Consensus         1 ~~~~~~~~~~t~~~~k~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~----   76 (381)
                      |++.++|++||+-.+||++||.|+||.+|...++.+++++..+++ .+.+-...-|..+.|.+.+...+.+..+++    
T Consensus        53 k~~~~~n~kntv~~~KRl~Gr~f~dP~~q~~~~~~~~~vv~~~dg-~vgi~v~ylge~~~ft~~Qv~Am~l~klk~~ae~  131 (727)
T KOG0103|consen   53 KNQQTTNVKNTVSNFKRLIGRKFSDPEVQREIKSLPRSVVQLKDG-DVGIKVEYLGEKHPFTPEQVLAMLLTKLKATAEK  131 (727)
T ss_pred             ccceeecccccchhhhhhhccccCChHhhhcccccchheeecCCC-CcceeehcccCCCCCChHHHHHHHHHHHHHHHHH
Confidence            467899999999999999999999999999999999999999884 466677777888999987665565554442    


Q ss_pred             -----ccccEEEE-EeeeCCCccEEEEEcCCCeEEEEECCCCeEEEEeccCCCCEEEEEEecCCCEEEEEe-CCCCEEEE
Q psy4650          77 -----HEKGVNCV-DYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPIVITGS-EDGSVRVW  149 (381)
Q Consensus        77 -----h~~~v~~~-~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~-~d~~i~vw  149 (381)
                           |.+.+.++ .|..+.+++.++.+.        .+....+++.+..-++  .++++.-...-+-... ..+.+.+.
T Consensus       132 ~l~~~v~DcvIavP~~FTd~qRravldAA--------~iagLn~lrLmnd~TA--~Al~ygiyKtDLP~~~ekpr~v~fv  201 (727)
T KOG0103|consen  132 NLKSPVSDCVIAVPSYFTDSQRRAVLDAA--------RIAGLNPLRLMNDTTA--TALAYGIYKTDLPENEEKPRNVVFV  201 (727)
T ss_pred             hcCCCCCCeeEeccccccHHHHHHHHhHH--------hhcCccceeeeecchH--hHhhcccccccCCCcccCcceEEEE
Confidence                 33333333 233333322232222        1122223333332221  2222211111111011 12345555


Q ss_pred             eCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCceEEEecCCCEEEEEecCceeecccccCCcccc
Q psy4650         150 HSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKVGREEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFE  229 (381)
Q Consensus       150 d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (381)
                      |.          +|+..-.+++-...|..-+.++.                ||..                +++...   
T Consensus       202 D~----------GHS~~q~si~aF~kG~lkvl~ta----------------~D~~----------------lGgr~f---  236 (727)
T KOG0103|consen  202 DI----------GHSSYQVSIAAFTKGKLKVLATA----------------FDRK----------------LGGRDF---  236 (727)
T ss_pred             ec----------ccccceeeeeeeccCcceeeeee----------------cccc----------------cccchH---
Confidence            54          34443333333333333222221                4432                111111   


Q ss_pred             ccCCceEEeeehHHHHHhccCCCcChhHHHHHHHHHhhhhhhccccceeeEEEecccCCcccccccChHHHHHHHHHHhh
Q psy4650         230 NITAGVVLTLSVHVTIKYRLDISDSHRSVAKLRAAAETCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIGGLLT  309 (381)
Q Consensus       230 ~~~dg~~l~~~~~d~~~~~~d~~~~~~~~~~l~~~~e~ak~~lS~~~~~~i~~~~l~~g~~~~~~itr~~fe~l~~~l~~  309 (381)
                        +.-..-+++..++.+|..|.+.+.++.-||+.+||+.|+.||+++.+..++++++++.|.+..++|++||+++.+++.
T Consensus       237 --De~L~~hfa~efk~kykidv~sn~kA~lRL~~~~EKlKK~lSAN~~~plNIEcfM~d~dvs~~i~ReEfEel~~plL~  314 (727)
T KOG0103|consen  237 --DEALIDHFAKEFKTKYKIDVRSNAKAKLRLLAECEKLKKVLSANTELPLNIECFMNDKDVSSKIKREEFEELSAPLLE  314 (727)
T ss_pred             --HHHHHHHHHHHhccccccchhhchhHHHHHHHHHHHHHHHhhcCcCCCcchhheeecchhhhhccHHHHHHHHHHHHH
Confidence              111222345567778899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhHhhhccccceeeEeeccccCcceEEeecHHHHHHHHHHHHH----HhHHHHHHHH
Q psy4650         310 SFVQPCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIGGLLT----SFVQPIEDVL  366 (381)
Q Consensus       310 ~~~~~~~~~Ls~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~----~~~~~~~~~l  366 (381)
                      +...|+..+|.+   +.+..++++.+..+||..+.|.+.+++.++|+    +|++.-+.+-
T Consensus       315 rv~~p~~~~l~d---~~l~~edi~~VEiVGg~sripaike~Is~~Fgke~s~TlN~dEava  372 (727)
T KOG0103|consen  315 RVEVPLLKALAD---AKLKVEDIHAVEIVGGLSRIPAIKEMISDFFGKELSRTLNQDEAVA  372 (727)
T ss_pred             hhhHHHHHHHHH---hcCccccceeEEEecCcccchHHHHHHHHHhCCcccccccHHHHHH
Confidence            999999999998   78889999999999999999999999999998    4555555443

>KOG0319|consensus

Probab=99.88  E-value=1.3e-21  Score=177.73  Aligned_cols=143  Identities=24%  Similarity=0.443  Sum_probs=136.4

Q ss_pred             ceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEEEeccCCCCE
Q psy4650          46 IEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNI  125 (381)
Q Consensus        46 ~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v  125 (381)
                      ...+++||.|++.++|+.+  ....+.+|.||+..|.|+.|+|..+  .++|+|.|++|++|.+.+..++.+|.||+..|
T Consensus       475 dkLiAT~SqDktaKiW~le--~~~l~~vLsGH~RGvw~V~Fs~~dq--~laT~SgD~TvKIW~is~fSClkT~eGH~~aV  550 (775)
T KOG0319|consen  475 DKLIATGSQDKTAKIWDLE--QLRLLGVLSGHTRGVWCVSFSKNDQ--LLATCSGDKTVKIWSISTFSCLKTFEGHTSAV  550 (775)
T ss_pred             CceEEecccccceeeeccc--CceEEEEeeCCccceEEEEeccccc--eeEeccCCceEEEEEeccceeeeeecCcccee
Confidence            5699999999999999998  4678899999999999999999665  89999999999999999999999999999999


Q ss_pred             EEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCCCeEEEEe
Q psy4650         126 SAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKV  192 (381)
Q Consensus       126 ~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~  192 (381)
                      ..++|-.++..|+||+.||.+++|++.++.++.++..|.++|++++.+|.+..+++|+.||.+.+|.
T Consensus       551 lra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wk  617 (775)
T KOG0319|consen  551 LRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWK  617 (775)
T ss_pred             EeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEee
Confidence            9999999999999999999999999999999999999999999999999999999999999999953

>PTZ00421 coronin; Provisional

Probab=99.88  E-value=5.9e-21  Score=177.44  Aligned_cols=166  Identities=13%  Similarity=0.192  Sum_probs=132.2

Q ss_pred             eeccccccEEEEEeee-CCCccEEEEEcCCCeEEEEECCCC-------eEEEEeccCCCCEEEEEEecCC-CEEEEEeCC
Q psy4650          73 TLYGHEKGVNCVDYYH-GGDKPYLISGADDRLVKIWDYQNK-------TCVQTLEGHGQNISAVCFHPEL-PIVITGSED  143 (381)
Q Consensus        73 ~l~~h~~~v~~~~~~~-~~~~~~l~s~~~d~~v~vwd~~~~-------~~~~~~~~~~~~v~~~~~~p~~-~~l~s~~~d  143 (381)
                      .+.||.+.|.+++|+| ++.  +|++|+.|++|++||+.++       .++..+.+|...|.+++|+|++ .+|++|+.|
T Consensus        70 ~l~GH~~~V~~v~fsP~d~~--~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~D  147 (493)
T PTZ00421         70 ILLGQEGPIIDVAFNPFDPQ--KLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGAD  147 (493)
T ss_pred             eEeCCCCCEEEEEEcCCCCC--EEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCC
Confidence            4679999999999999 555  8999999999999999765       3567889999999999999986 599999999


Q ss_pred             CCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCceEEEecCCCEEEEEecCceeeccccc
Q psy4650         144 GSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKVGREEPAVSMDVNGCKIIWARHSEVQQANLKT  223 (381)
Q Consensus       144 ~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~  223 (381)
                      ++|++||+.+++....+.+|...|.+++|+|+|..+++++.|+.+++          ||.+++..+.....+.....   
T Consensus       148 gtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrI----------wD~rsg~~v~tl~~H~~~~~---  214 (493)
T PTZ00421        148 MVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNI----------IDPRDGTIVSSVEAHASAKS---  214 (493)
T ss_pred             CEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEE----------EECCCCcEEEEEecCCCCcc---
Confidence            99999999999999999999999999999999999999999999999          77777766554433211100   


Q ss_pred             CCccccccCCceEEee-e---hHHHHHhccCCCcCh
Q psy4650         224 MPEVFENITAGVVLTL-S---VHVTIKYRLDISDSH  255 (381)
Q Consensus       224 ~~~~~~~~~dg~~l~~-~---~~d~~~~~~d~~~~~  255 (381)
                        ....|.+++..+++ +   +.++....||++...
T Consensus       215 --~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~  248 (493)
T PTZ00421        215 --QRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMA  248 (493)
T ss_pred             --eEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCC
Confidence              01234455544443 3   235678889987543

>KOG0265|consensus

Probab=99.88  E-value=3.9e-21  Score=157.62  Aligned_cols=206  Identities=17%  Similarity=0.182  Sum_probs=149.3

Q ss_pred             cceeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeE
Q psy4650          35 TKVDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTC  114 (381)
Q Consensus        35 ~~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~  114 (381)
                      ..|.+.+.|+ +.++++|+.|..|.+|+... ...-...++||.+.|..+.|.++++  .++++|.|++|+.||.++|++
T Consensus        49 eI~~~~F~P~-gs~~aSgG~Dr~I~LWnv~g-dceN~~~lkgHsgAVM~l~~~~d~s--~i~S~gtDk~v~~wD~~tG~~  124 (338)
T KOG0265|consen   49 EIYTIKFHPD-GSCFASGGSDRAIVLWNVYG-DCENFWVLKGHSGAVMELHGMRDGS--HILSCGTDKTVRGWDAETGKR  124 (338)
T ss_pred             eEEEEEECCC-CCeEeecCCcceEEEEeccc-cccceeeeccccceeEeeeeccCCC--EEEEecCCceEEEEeccccee
Confidence            3467778885 77999999999999999755 2333567889999999999999887  899999999999999999999


Q ss_pred             EEEeccCCCCEEEEEEecCCC-EEEEEeCCCCEEEEeCCC----------------------------------------
Q psy4650         115 VQTLEGHGQNISAVCFHPELP-IVITGSEDGSVRVWHSGT----------------------------------------  153 (381)
Q Consensus       115 ~~~~~~~~~~v~~~~~~p~~~-~l~s~~~d~~i~vwd~~~----------------------------------------  153 (381)
                      .+.+++|..-|.++.-+.-|. .+.+++.|+++++||+++                                        
T Consensus       125 ~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r  204 (338)
T KOG0265|consen  125 IRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLR  204 (338)
T ss_pred             eehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecccccceeeccccCceeeeccc
Confidence            888888877777666333343 445666677777777662                                        


Q ss_pred             -CeeeEEEecCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCceEEEecC-CCEEEEEecCceeecccccCCcccccc
Q psy4650         154 -HRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKVGREEPAVSMDVN-GCKIIWARHSEVQQANLKTMPEVFENI  231 (381)
Q Consensus       154 -~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~~~~~~~~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (381)
                       +...+.+.+|.+.|+.+..+|+|.++.+-+.|.++++|+-+.     |.+. ....++....+    ++.-....+.|+
T Consensus       205 ~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp-----~~p~~R~v~if~g~~h----nfeknlL~csws  275 (338)
T KOG0265|consen  205 KNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRP-----FAPSQRCVKIFQGHIH----NFEKNLLKCSWS  275 (338)
T ss_pred             cCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecc-----cCCCCceEEEeecchh----hhhhhcceeecc
Confidence             233345567788888888888888888888888888844211     1110 11122222222    222222236789


Q ss_pred             CCceEEeeehHHHHHhccCCCc
Q psy4650         232 TAGVVLTLSVHVTIKYRLDISD  253 (381)
Q Consensus       232 ~dg~~l~~~~~d~~~~~~d~~~  253 (381)
                      |++..+..++.+...+.||...
T Consensus       276 p~~~~i~ags~dr~vyvwd~~~  297 (338)
T KOG0265|consen  276 PNGTKITAGSADRFVYVWDTTS  297 (338)
T ss_pred             CCCCccccccccceEEEeeccc
Confidence            9999999999999999999753

>KOG0292|consensus

Probab=99.87  E-value=1.7e-21  Score=180.23  Aligned_cols=242  Identities=16%  Similarity=0.225  Sum_probs=185.3

Q ss_pred             eeecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEEEe
Q psy4650          39 ITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTL  118 (381)
Q Consensus        39 i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~  118 (381)
                      +.++|. ...++++-..|.|.+||..  -..++..+.+|.++|..++|+|.+.  +++|||.|..|+||++++.+++.++
T Consensus        15 lsFHP~-rPwILtslHsG~IQlWDYR--M~tli~rFdeHdGpVRgv~FH~~qp--lFVSGGDDykIkVWnYk~rrclftL   89 (1202)
T KOG0292|consen   15 LSFHPK-RPWILTSLHSGVIQLWDYR--MGTLIDRFDEHDGPVRGVDFHPTQP--LFVSGGDDYKIKVWNYKTRRCLFTL   89 (1202)
T ss_pred             eecCCC-CCEEEEeecCceeeeehhh--hhhHHhhhhccCCccceeeecCCCC--eEEecCCccEEEEEecccceehhhh
Confidence            555665 3488889999999999986  3557788999999999999999655  9999999999999999999999999


Q ss_pred             ccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCC--
Q psy4650         119 EGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKVGREE--  196 (381)
Q Consensus       119 ~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~~~~~--  196 (381)
                      .||-+.|..+.||+.-+.++|+|.|.+|+||+..+++++..+.+|...|.|..|+|....++++|-|-+|++|+...-  
T Consensus        90 ~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRk  169 (1202)
T KOG0292|consen   90 LGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRK  169 (1202)
T ss_pred             ccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhc
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999763220  


Q ss_pred             ----ceEEEecC-CCEE----EEEecCceeecccccCCcc---ccccCCceEEeeehHHHHHhccCCCcChh-HHHHHHH
Q psy4650         197 ----PAVSMDVN-GCKI----IWARHSEVQQANLKTMPEV---FENITAGVVLTLSVHVTIKYRLDISDSHR-SVAKLRA  263 (381)
Q Consensus       197 ----~~~~~d~~-~~~~----~~~~~~~~~~~~~~~~~~~---~~~~~dg~~l~~~~~d~~~~~~d~~~~~~-~~~~l~~  263 (381)
                          +. +.+.. ++..    ++..........+.+|.+.   .+|.|.--.++++++|..+..|.....+. .+...+.
T Consensus       170 k~~~pg-~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrg  248 (1202)
T KOG0292|consen  170 KNKAPG-SLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRG  248 (1202)
T ss_pred             cCCCCC-CchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhc
Confidence                00 01000 0000    0000011111223344432   46778889999999999988887755432 3334444


Q ss_pred             HHhh---------hhhhccccceeeEEEeccc
Q psy4650         264 AAET---------CMHVLSTLQSSNVFVESLY  286 (381)
Q Consensus       264 ~~e~---------ak~~lS~~~~~~i~~~~l~  286 (381)
                      +-..         ...+||.++...|.++.+-
T Consensus       249 H~nnVssvlfhp~q~lIlSnsEDksirVwDm~  280 (1202)
T KOG0292|consen  249 HYNNVSSVLFHPHQDLILSNSEDKSIRVWDMT  280 (1202)
T ss_pred             ccCCcceEEecCccceeEecCCCccEEEEecc
Confidence            4332         3456788888888888654

>KOG0292|consensus

Probab=99.87  E-value=4.3e-21  Score=177.65  Aligned_cols=198  Identities=22%  Similarity=0.315  Sum_probs=161.1

Q ss_pred             eeeecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEEE
Q psy4650          38 DITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQT  117 (381)
Q Consensus        38 ~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~  117 (381)
                      .+.+++. ..++++|++|-+|++|+..  ...++.+|.||.+.|..+.|++  +.++++|+|.|.+|+||+..+++++..
T Consensus        56 gv~FH~~-qplFVSGGDDykIkVWnYk--~rrclftL~GHlDYVRt~~FHh--eyPWIlSASDDQTIrIWNwqsr~~iav  130 (1202)
T KOG0292|consen   56 GVDFHPT-QPLFVSGGDDYKIKVWNYK--TRRCLFTLLGHLDYVRTVFFHH--EYPWILSASDDQTIRIWNWQSRKCIAV  130 (1202)
T ss_pred             eeeecCC-CCeEEecCCccEEEEEecc--cceehhhhccccceeEEeeccC--CCceEEEccCCCeEEEEeccCCceEEE
Confidence            5666766 4589999999999999997  5788999999999999999998  667999999999999999999999999


Q ss_pred             eccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCC--------C-------------------e--eeEEEecCCcceE
Q psy4650         118 LEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGT--------H-------------------R--LEISLTYGLERVW  168 (381)
Q Consensus       118 ~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~--------~-------------------~--~~~~~~~~~~~v~  168 (381)
                      +.||...|.|.+|+|....++|+|-|.+|||||...        +                   .  ....+.+|.-.|+
T Consensus       131 ltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVN  210 (1202)
T KOG0292|consen  131 LTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVN  210 (1202)
T ss_pred             EecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccc
Confidence            999999999999999999999999999999999752        1                   0  1134568888999


Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEecCCCceEEEecCCCEEEEEecCceeecccccCCccccccCCceEEeeehHHHHHhc
Q psy4650         169 TISSLKGSNNVAIGYDEGSVLLKVGREEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSVHVTIKYR  248 (381)
Q Consensus       169 ~v~~~~~~~~l~~~~~dg~v~i~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~d~~~~~  248 (381)
                      -++|+|.-..+++|++|..|++|.-.+...  |..++.+        .+..++.+    +-|.|....+.+.+.|+....
T Consensus       211 waAfhpTlpliVSG~DDRqVKlWrmnetKa--WEvDtcr--------gH~nnVss----vlfhp~q~lIlSnsEDksirV  276 (1202)
T KOG0292|consen  211 WAAFHPTLPLIVSGADDRQVKLWRMNETKA--WEVDTCR--------GHYNNVSS----VLFHPHQDLILSNSEDKSIRV  276 (1202)
T ss_pred             eEEecCCcceEEecCCcceeeEEEeccccc--eeehhhh--------cccCCcce----EEecCccceeEecCCCccEEE
Confidence            999999999999999999999976332222  3322221        11122222    345677888999999999999


Q ss_pred             cCCCcC
Q psy4650         249 LDISDS  254 (381)
Q Consensus       249 ~d~~~~  254 (381)
                      ||+...
T Consensus       277 wDm~kR  282 (1202)
T KOG0292|consen  277 WDMTKR  282 (1202)
T ss_pred             Eecccc
Confidence            998643

>KOG0310|consensus

Probab=99.86  E-value=8.5e-21  Score=165.07  Aligned_cols=206  Identities=23%  Similarity=0.321  Sum_probs=160.4

Q ss_pred             hHHHhhhhhcccccccCCChhhHHHHhhhcceeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEE
Q psy4650           6 SQAKNTIIKNKRALNTELTETDIETIVRETKVDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVD   85 (381)
Q Consensus         6 ~~~~~t~~~~k~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~   85 (381)
                      ..+.+|+.+||+                 ..|.+.+..| +..+++|...|.|++||..  +..+++.+++|+.+|....
T Consensus        58 ~~~~k~~srFk~-----------------~v~s~~fR~D-G~LlaaGD~sG~V~vfD~k--~r~iLR~~~ah~apv~~~~  117 (487)
T KOG0310|consen   58 RSVRKTFSRFKD-----------------VVYSVDFRSD-GRLLAAGDESGHVKVFDMK--SRVILRQLYAHQAPVHVTK  117 (487)
T ss_pred             hhhhhhHHhhcc-----------------ceeEEEeecC-CeEEEccCCcCcEEEeccc--cHHHHHHHhhccCceeEEE
Confidence            456667777764                 4567777766 6799999999999999954  5678899999999999999


Q ss_pred             eeeCCCccEEEEEcCCCeEEEEECCCCeEEEEeccCCCCEEEEEEecCCC-EEEEEeCCCCEEEEeCCCC-eeeEEEecC
Q psy4650          86 YYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELP-IVITGSEDGSVRVWHSGTH-RLEISLTYG  163 (381)
Q Consensus        86 ~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~p~~~-~l~s~~~d~~i~vwd~~~~-~~~~~~~~~  163 (381)
                      |+|.++ ..+++|+.|+.+++||+.+......+.+|++.|.|.+|+|... .++|||.||+|++||.+.. ..+.+++ |
T Consensus       118 f~~~d~-t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln-h  195 (487)
T KOG0310|consen  118 FSPQDN-TMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN-H  195 (487)
T ss_pred             ecccCC-eEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEec-C
Confidence            999876 3889999999999999999987778999999999999999765 8899999999999999987 5566665 7


Q ss_pred             CcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCceEEEecC-CCEEEEEecCceeecccccCCccccccCCceEEeeehH
Q psy4650         164 LERVWTISSLKGSNNVAIGYDEGSVLLKVGREEPAVSMDVN-GCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSVH  242 (381)
Q Consensus       164 ~~~v~~v~~~~~~~~l~~~~~dg~v~i~~~~~~~~~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~  242 (381)
                      ..+|.++.+.|.|..+++++. ..+++          ||.. +++.+.....+..  .+.+    +.+..++..|.+++-
T Consensus       196 g~pVe~vl~lpsgs~iasAgG-n~vkV----------WDl~~G~qll~~~~~H~K--tVTc----L~l~s~~~rLlS~sL  258 (487)
T KOG0310|consen  196 GCPVESVLALPSGSLIASAGG-NSVKV----------WDLTTGGQLLTSMFNHNK--TVTC----LRLASDSTRLLSGSL  258 (487)
T ss_pred             CCceeeEEEcCCCCEEEEcCC-CeEEE----------EEecCCceehhhhhcccc--eEEE----EEeecCCceEeeccc
Confidence            899999999999999988874 56777          7776 4555544432211  1111    223346677777776


Q ss_pred             HHHHhccC
Q psy4650         243 VTIKYRLD  250 (381)
Q Consensus       243 d~~~~~~d  250 (381)
                      |+....++
T Consensus       259 D~~VKVfd  266 (487)
T KOG0310|consen  259 DRHVKVFD  266 (487)
T ss_pred             ccceEEEE
Confidence            66555544

>KOG0281|consensus

Probab=99.86  E-value=5.8e-22  Score=165.48  Aligned_cols=218  Identities=16%  Similarity=0.240  Sum_probs=171.0

Q ss_pred             ceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCe---EEEEeccCC
Q psy4650          46 IEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKT---CVQTLEGHG  122 (381)
Q Consensus        46 ~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~---~~~~~~~~~  122 (381)
                      ..++++|+.|.+|++||..  ...++.++-+|.+.|..+.|+.  .  +++++|.|.++.+||+....   +.+.+.||.
T Consensus       247 ~rviisGSSDsTvrvWDv~--tge~l~tlihHceaVLhlrf~n--g--~mvtcSkDrsiaVWdm~sps~it~rrVLvGHr  320 (499)
T KOG0281|consen  247 ERVIVSGSSDSTVRVWDVN--TGEPLNTLIHHCEAVLHLRFSN--G--YMVTCSKDRSIAVWDMASPTDITLRRVLVGHR  320 (499)
T ss_pred             ceEEEecCCCceEEEEecc--CCchhhHHhhhcceeEEEEEeC--C--EEEEecCCceeEEEeccCchHHHHHHHHhhhh
Confidence            4589999999999999997  4667889999999999999974  2  89999999999999998764   456788999


Q ss_pred             CCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCceEEEe
Q psy4650         123 QNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKVGREEPAVSMD  202 (381)
Q Consensus       123 ~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~~~~~~~~~~d  202 (381)
                      +.|..+.|+  .+++++++.|++|++|+..++.++.++.+|.-.+.|+.+  .|+++++|+.|.++++          ||
T Consensus       321 AaVNvVdfd--~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRl----------wd  386 (499)
T KOG0281|consen  321 AAVNVVDFD--DKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRL----------WD  386 (499)
T ss_pred             hheeeeccc--cceEEEecCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCCCceEEE----------Ee
Confidence            999999995  459999999999999999999999999999999988877  4889999999999999          88


Q ss_pred             cCCCEEEEEecCceeecccccCCccccccCCceEEeeehHHHHHhccCCCc--ChhH------HHHHHHHHhhh------
Q psy4650         203 VNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSVHVTIKYRLDISD--SHRS------VAKLRAAAETC------  268 (381)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~d~~~~~~d~~~--~~~~------~~~l~~~~e~a------  268 (381)
                      ...|.++-.+..+.  .-+....+      |.+.++++..|+++..||+..  ++++      +..+..+..++      
T Consensus       387 i~~G~cLRvLeGHE--eLvRciRF------d~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD  458 (499)
T KOG0281|consen  387 IECGACLRVLEGHE--ELVRCIRF------DNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFD  458 (499)
T ss_pred             ccccHHHHHHhchH--Hhhhheee------cCceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeec
Confidence            88787654443321  11122222      668889999999999998743  3332      22222222222      


Q ss_pred             -hhhccccceeeEEEecccCCccc
Q psy4650         269 -MHVLSTLQSSNVFVESLYDGLDF  291 (381)
Q Consensus       269 -k~~lS~~~~~~i~~~~l~~g~~~  291 (381)
                       .++.|++.+.+|.++.+.+|-+-
T Consensus       459 ~fqIvsssHddtILiWdFl~~~~~  482 (499)
T KOG0281|consen  459 EFQIISSSHDDTILIWDFLNGPPS  482 (499)
T ss_pred             ceEEEeccCCCeEEEEEcCCCCcc
Confidence             34557888889999988777543

>KOG0296|consensus

Probab=99.86  E-value=8.6e-20  Score=153.45  Aligned_cols=164  Identities=16%  Similarity=0.259  Sum_probs=149.5

Q ss_pred             cceeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeE
Q psy4650          35 TKVDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTC  114 (381)
Q Consensus        35 ~~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~  114 (381)
                      ..|++.-+| ..+.+++|+.|..-.+|+..+..  .+..+.||.+.|+++.|+.+|.  +||||+.+|.|+||+..++..
T Consensus        66 svFavsl~P-~~~l~aTGGgDD~AflW~~~~ge--~~~eltgHKDSVt~~~Fshdgt--lLATGdmsG~v~v~~~stg~~  140 (399)
T KOG0296|consen   66 SVFAVSLHP-NNNLVATGGGDDLAFLWDISTGE--FAGELTGHKDSVTCCSFSHDGT--LLATGDMSGKVLVFKVSTGGE  140 (399)
T ss_pred             ceEEEEeCC-CCceEEecCCCceEEEEEccCCc--ceeEecCCCCceEEEEEccCce--EEEecCCCccEEEEEcccCce
Confidence            346676777 57799999999999999997533  6788999999999999999888  999999999999999999998


Q ss_pred             EEEeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCCCeEEEEecC
Q psy4650         115 VQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKVGR  194 (381)
Q Consensus       115 ~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~~~  194 (381)
                      ...+....+.+.=+.|||.+..|+.|+.||.+.+|.+..+...+.+.+|..++++=.|.|+|+.++++..||++++    
T Consensus       141 ~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~----  216 (399)
T KOG0296|consen  141 QWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIV----  216 (399)
T ss_pred             EEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEE----
Confidence            8888766677888999999999999999999999999998889999999999999999999999999999999999    


Q ss_pred             CCceEEEecCCCEEEEEec
Q psy4650         195 EEPAVSMDVNGCKIIWARH  213 (381)
Q Consensus       195 ~~~~~~~d~~~~~~~~~~~  213 (381)
                            |++.++.++..+.
T Consensus       217 ------Wn~ktg~p~~~~~  229 (399)
T KOG0296|consen  217 ------WNPKTGQPLHKIT  229 (399)
T ss_pred             ------EecCCCceeEEec
Confidence                  9999999888776

>KOG0264|consensus

Probab=99.86  E-value=9.2e-21  Score=163.54  Aligned_cols=156  Identities=17%  Similarity=0.175  Sum_probs=135.0

Q ss_pred             ceeeeecCCCceEEEEEecCCeEEEecCCCccc-----eeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECC
Q psy4650          36 KVDITTNKDMIEYKISYQESSRVKAFNPIQVAT-----LILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQ  110 (381)
Q Consensus        36 ~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~-----~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~  110 (381)
                      .|.+..+......+++++.|++|.+||+.....     .....+.+|...|..++|+|-.. .++++++.|+.+.|||.+
T Consensus       180 g~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~-~lF~sv~dd~~L~iwD~R  258 (422)
T KOG0264|consen  180 GYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHE-DLFGSVGDDGKLMIWDTR  258 (422)
T ss_pred             ccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccch-hhheeecCCCeEEEEEcC
Confidence            667777777788999999999999999854322     34566889999999999999766 489999999999999999


Q ss_pred             --CCeEEEEeccCCCCEEEEEEecCC-CEEEEEeCCCCEEEEeCCCC-eeeEEEecCCcceEEEEEcCC-CCEEEEEeCC
Q psy4650         111 --NKTCVQTLEGHGQNISAVCFHPEL-PIVITGSEDGSVRVWHSGTH-RLEISLTYGLERVWTISSLKG-SNNVAIGYDE  185 (381)
Q Consensus       111 --~~~~~~~~~~~~~~v~~~~~~p~~-~~l~s~~~d~~i~vwd~~~~-~~~~~~~~~~~~v~~v~~~~~-~~~l~~~~~d  185 (381)
                        +.++....++|+++|+|++|+|-+ ..||+||.|++|++||++.- ..+.++.+|...|.+|.|+|. ...||+++.|
T Consensus       259 ~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D  338 (422)
T KOG0264|consen  259 SNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTD  338 (422)
T ss_pred             CCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccC
Confidence              556777889999999999999955 48899999999999999964 467889999999999999997 5689999999


Q ss_pred             CeEEEEe
Q psy4650         186 GSVLLKV  192 (381)
Q Consensus       186 g~v~i~~  192 (381)
                      +.+.+|+
T Consensus       339 ~rl~vWD  345 (422)
T KOG0264|consen  339 RRLNVWD  345 (422)
T ss_pred             CcEEEEe
Confidence            9999965

>KOG0294|consensus

Probab=99.86  E-value=2.4e-20  Score=153.94  Aligned_cols=203  Identities=15%  Similarity=0.180  Sum_probs=154.3

Q ss_pred             CCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEEEeccCCC
Q psy4650          44 DMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQ  123 (381)
Q Consensus        44 ~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~  123 (381)
                      -.+.|+++|+.|.+|+|||+..  ...+..+-.|.+.|+++.|.++.....|++|+.||.|.+|+.....++.++++|.+
T Consensus        51 Vs~~~~aSGssDetI~IYDm~k--~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~  128 (362)
T KOG0294|consen   51 VSGPYVASGSSDETIHIYDMRK--RKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKG  128 (362)
T ss_pred             ecceeEeccCCCCcEEEEeccc--hhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeeccccc
Confidence            3467999999999999999963  44567788899999999999987766899999999999999999999999999999


Q ss_pred             CEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCCCeEEE-------------
Q psy4650         124 NISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLL-------------  190 (381)
Q Consensus       124 ~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i-------------  190 (381)
                      .|+.++.||.+++-++.+.|+.++.||+-.|+.-..++-. .....|.|+|.|.+++.+..++.-..             
T Consensus       129 ~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~-~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~  207 (362)
T KOG0294|consen  129 QVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLK-NKATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFREIEN  207 (362)
T ss_pred             ccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccC-CcceeeEEcCCCCEEEEEeccEEEEEecccHhHhhhhhc
Confidence            9999999999999999999999999999888765555432 22334778887777666655432221             


Q ss_pred             ----------------EecCCCceEEEecCCCEEEEEecCc-eeecccccCCccccccCCceEEeeehHHHHHhccCCCc
Q psy4650         191 ----------------KVGREEPAVSMDVNGCKIIWARHSE-VQQANLKTMPEVFENITAGVVLTLSVHVTIKYRLDISD  253 (381)
Q Consensus       191 ----------------~~~~~~~~~~~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~dg~~l~~~~~d~~~~~~d~~~  253 (381)
                                      ..++++.+..||.++..+......+ .....+...     -.|++.+|++++.|+.+.+||++.
T Consensus       208 ~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~-----~~~~~~~lvTaSSDG~I~vWd~~~  282 (362)
T KOG0294|consen  208 PKRILCATFLDGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASY-----TNPEHEYLVTASSDGFIKVWDIDM  282 (362)
T ss_pred             cccceeeeecCCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEE-----ecCCceEEEEeccCceEEEEEccc
Confidence                            1233445556777666555443222 122222222     247899999999999999999876


Q ss_pred             C
Q psy4650         254 S  254 (381)
Q Consensus       254 ~  254 (381)
                      +
T Consensus       283 ~  283 (362)
T KOG0294|consen  283 E  283 (362)
T ss_pred             c
Confidence            5

>KOG1407|consensus

Probab=99.85  E-value=1.8e-20  Score=150.95  Aligned_cols=190  Identities=17%  Similarity=0.162  Sum_probs=158.8

Q ss_pred             ceeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCC---
Q psy4650          36 KVDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNK---  112 (381)
Q Consensus        36 ~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~---  112 (381)
                      ...+.++.+ +..+++|+.|+++.+|+++......-...+||.+.|..++|+|... ..+++++.|++|++||++++   
T Consensus        23 v~Sv~wn~~-g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~-d~~atas~dk~ir~wd~r~~k~~  100 (313)
T KOG1407|consen   23 VHSVAWNCD-GTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHP-DLFATASGDKTIRIWDIRSGKCT  100 (313)
T ss_pred             ceEEEEccc-CceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCC-cceEEecCCceEEEEEeccCcEE
Confidence            345666655 5689999999999999997654344456789999999999998765 48999999999999999762   


Q ss_pred             -------------------------------------------------------------------------------e
Q psy4650         113 -------------------------------------------------------------------------------T  113 (381)
Q Consensus       113 -------------------------------------------------------------------------------~  113 (381)
                                                                                                     +
T Consensus       101 ~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLk  180 (313)
T KOG1407|consen  101 ARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLK  180 (313)
T ss_pred             EEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEEEEeccccc
Confidence                                                                                           2


Q ss_pred             EEEEeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCCCeEEEEec
Q psy4650         114 CVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKVG  193 (381)
Q Consensus       114 ~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~~  193 (381)
                      ++..++.|.....|+.|+|+|+++|+|+.|-.+.+||+..--+++.+..+.-+|+.+.|+.+|++||+||.|..|-|   
T Consensus       181 pv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDI---  257 (313)
T KOG1407|consen  181 PVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDI---  257 (313)
T ss_pred             cccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCccceEEe---
Confidence            33446789888999999999999999999999999999988888999989999999999999999999999999988   


Q ss_pred             CCCceEEEecCCCEEEEEecCceeecccccCCccccccCCceEEeeehHHH
Q psy4650         194 REEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSVHVT  244 (381)
Q Consensus       194 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~d~  244 (381)
                             -+..+|..+|.+..+.....       ++|.|....|+++..+.
T Consensus       258 -------A~vetGd~~~eI~~~~~t~t-------VAWHPk~~LLAyA~ddk  294 (313)
T KOG1407|consen  258 -------AEVETGDRVWEIPCEGPTFT-------VAWHPKRPLLAYACDDK  294 (313)
T ss_pred             -------EecccCCeEEEeeccCCcee-------EEecCCCceeeEEecCC
Confidence                   88899999999876543322       45678888888877653

>KOG0318|consensus

Probab=99.85  E-value=3.2e-19  Score=156.65  Aligned_cols=148  Identities=19%  Similarity=0.234  Sum_probs=129.9

Q ss_pred             ecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEEEec-
Q psy4650          41 TNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE-  119 (381)
Q Consensus        41 ~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~-  119 (381)
                      .-+..+--+++|++|++|-+|+-.  +-+...++..|...|.|+.|+|+|+  ++++++.||++.+||-.+++.+..+. 
T Consensus       155 ~KpsRPfRi~T~sdDn~v~ffeGP--PFKFk~s~r~HskFV~~VRysPDG~--~Fat~gsDgki~iyDGktge~vg~l~~  230 (603)
T KOG0318|consen  155 FKPSRPFRIATGSDDNTVAFFEGP--PFKFKSSFREHSKFVNCVRYSPDGS--RFATAGSDGKIYIYDGKTGEKVGELED  230 (603)
T ss_pred             ccCCCceEEEeccCCCeEEEeeCC--CeeeeecccccccceeeEEECCCCC--eEEEecCCccEEEEcCCCccEEEEecC
Confidence            334446678999999999999853  4455667889999999999999988  79999999999999999999999987 


Q ss_pred             --cCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEE-------------------------------------
Q psy4650         120 --GHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISL-------------------------------------  160 (381)
Q Consensus       120 --~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~-------------------------------------  160 (381)
                        +|.+.|.+++|+||+..+++++.|.+++|||+.+..++.++                                     
T Consensus       231 ~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~  310 (603)
T KOG0318|consen  231 SDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDP  310 (603)
T ss_pred             CCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCC
Confidence              89999999999999999999999999999999876555433                                     


Q ss_pred             ------ecCCcceEEEEEcCCCCEEEEEeCCCeEEEEe
Q psy4650         161 ------TYGLERVWTISSLKGSNNVAIGYDEGSVLLKV  192 (381)
Q Consensus       161 ------~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~  192 (381)
                            .+|...|+++..+|+++++.+|+.||.|.-|+
T Consensus       311 ~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~  348 (603)
T KOG0318|consen  311 SVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWD  348 (603)
T ss_pred             ChhheecccccceeEEEEcCCCCEEEeeccCceEEEEe
Confidence                  36677899999999999999999999999987

>KOG0318|consensus

Probab=99.85  E-value=2.7e-20  Score=163.26  Aligned_cols=225  Identities=14%  Similarity=0.190  Sum_probs=185.9

Q ss_pred             cccccccCCChhhHHHHhhhcceeeeec--CCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCc
Q psy4650          15 NKRALNTELTETDIETIVRETKVDITTN--KDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDK   92 (381)
Q Consensus        15 ~k~~~~~~~~~~~~~~~~~~~~~~i~~~--~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~   92 (381)
                      -|.++-|++++++.-.++.+|.+.++..  ...+.|+++|...|+|+||+..+....+..+++--.++|..++|++++.+
T Consensus        38 Gksv~ir~i~~~~~~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~R  117 (603)
T KOG0318|consen   38 GKSVIIRNIDNPASVDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKR  117 (603)
T ss_pred             CCEEEEEECCCccceeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcE
Confidence            4778889999998888888777766532  34477999999999999999876555666677788899999999998873


Q ss_pred             cEEEEE-cCCCeEEEEECCCCeEEEEeccCCCCEEEEEEecCCC-EEEEEeCCCCEEEEeCCCCeeeEEEecCCcceEEE
Q psy4650          93 PYLISG-ADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELP-IVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTI  170 (381)
Q Consensus        93 ~~l~s~-~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~p~~~-~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~v  170 (381)
                       ..+.| +.++..+++-..+|.....+.||...|.+++|-|..+ .+++|+.|++|.+|+-...+...++..|+..|.++
T Consensus       118 -I~avGEGrerfg~~F~~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~V  196 (603)
T KOG0318|consen  118 -IAAVGEGRERFGHVFLWDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCV  196 (603)
T ss_pred             -EEEEecCccceeEEEEecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeE
Confidence             44444 3344555555567888999999999999999999988 78999999999999988888888999999999999


Q ss_pred             EEcCCCCEEEEEeCCCeEEEEecCCCceEEEecCCCEEEEEecC-ceeecccccCCccccccCCceEEeeehHHHHHhcc
Q psy4650         171 SSLKGSNNVAIGYDEGSVLLKVGREEPAVSMDVNGCKIIWARHS-EVQQANLKTMPEVFENITAGVVLTLSVHVTIKYRL  249 (381)
Q Consensus       171 ~~~~~~~~l~~~~~dg~v~i~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~dg~~l~~~~~d~~~~~~  249 (381)
                      .|+|+|..+++.+.||.+.+          ||..+|..+..+.. ..+...+.+    +.|+||+..+++++.|....+|
T Consensus       197 RysPDG~~Fat~gsDgki~i----------yDGktge~vg~l~~~~aHkGsIfa----lsWsPDs~~~~T~SaDkt~KIW  262 (603)
T KOG0318|consen  197 RYSPDGSRFATAGSDGKIYI----------YDGKTGEKVGELEDSDAHKGSIFA----LSWSPDSTQFLTVSADKTIKIW  262 (603)
T ss_pred             EECCCCCeEEEecCCccEEE----------EcCCCccEEEEecCCCCccccEEE----EEECCCCceEEEecCCceEEEE
Confidence            99999999999999999999          88888888877653 233333333    5689999999999999999999


Q ss_pred             CCCcC
Q psy4650         250 DISDS  254 (381)
Q Consensus       250 d~~~~  254 (381)
                      |+..+
T Consensus       263 dVs~~  267 (603)
T KOG0318|consen  263 DVSTN  267 (603)
T ss_pred             Eeecc
Confidence            98765

>KOG0640|consensus

Probab=99.85  E-value=6.3e-21  Score=157.10  Aligned_cols=201  Identities=15%  Similarity=0.196  Sum_probs=155.2

Q ss_pred             eeeeecCCCceEEEEEecCCeEEEecCCC----------------ccceeeEeeccccccEEEEEeeeCCCccEEEEEcC
Q psy4650          37 VDITTNKDMIEYKISYQESSRVKAFNPIQ----------------VATLILKTLYGHEKGVNCVDYYHGGDKPYLISGAD  100 (381)
Q Consensus        37 ~~i~~~~~~~~~~~s~~~d~~v~i~~~~~----------------~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~  100 (381)
                      .+..++++ +.++++|+.|-.|+|+|.+.                ....++++|..|.+.|+++.|+|...  .|++|+.
T Consensus       116 R~aafs~D-G~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~--ILiS~sr  192 (430)
T KOG0640|consen  116 RAAAFSPD-GSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRET--ILISGSR  192 (430)
T ss_pred             eeeeeCCC-CcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhh--eEEeccC
Confidence            34455666 66999999999999999751                11356889999999999999999766  8999999


Q ss_pred             CCeEEEEECCCCeEEEEecc--CCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEE---ecCCcceEEEEEcCC
Q psy4650         101 DRLVKIWDYQNKTCVQTLEG--HGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISL---TYGLERVWTISSLKG  175 (381)
Q Consensus       101 d~~v~vwd~~~~~~~~~~~~--~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~---~~~~~~v~~v~~~~~  175 (381)
                      |++|+++|+......+.++.  ...+|.+++|||.|.+++.|..-.++++||+.+.++..+-   ..|.+.|++|.+++.
T Consensus       193 D~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t  272 (430)
T KOG0640|consen  193 DNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSST  272 (430)
T ss_pred             CCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecCC
Confidence            99999999976543332222  3568999999999999999999999999999999887654   358889999999999


Q ss_pred             CCEEEEEeCCCeEEEEecCCCceEEEecCCCEEEEEecCceeecccccCCccccccCCceEEeeehHHHHHhccCCCcC
Q psy4650         176 SNNVAIGYDEGSVLLKVGREEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSVHVTIKYRLDISDS  254 (381)
Q Consensus       176 ~~~l~~~~~dg~v~i~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~d~~~~~~d~~~~  254 (381)
                      |+..++++.||.|++|+          .-+++++-.+........+.+    -.|..+|+++.+.+.|...+.|.+..+
T Consensus       273 ~~lYvTaSkDG~IklwD----------GVS~rCv~t~~~AH~gsevcS----a~Ftkn~kyiLsSG~DS~vkLWEi~t~  337 (430)
T KOG0640|consen  273 GSLYVTASKDGAIKLWD----------GVSNRCVRTIGNAHGGSEVCS----AVFTKNGKYILSSGKDSTVKLWEISTG  337 (430)
T ss_pred             ccEEEEeccCCcEEeec----------cccHHHHHHHHhhcCCceeee----EEEccCCeEEeecCCcceeeeeeecCC
Confidence            99999999999999954          444433322211111111111    246789999999999999999988765

>KOG0310|consensus

Probab=99.85  E-value=1.5e-19  Score=157.33  Aligned_cols=192  Identities=19%  Similarity=0.247  Sum_probs=149.3

Q ss_pred             hcceeee-ecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCC
Q psy4650          34 ETKVDIT-TNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNK  112 (381)
Q Consensus        34 ~~~~~i~-~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~  112 (381)
                      +.|...+ +.+.....+++|++|+.+++||..+  ......+.+|++.|.|.+|+|-.. ..++|||.||+|++||.+..
T Consensus       110 ~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~--a~v~~~l~~htDYVR~g~~~~~~~-hivvtGsYDg~vrl~DtR~~  186 (487)
T KOG0310|consen  110 QAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLST--AYVQAELSGHTDYVRCGDISPAND-HIVVTGSYDGKVRLWDTRSL  186 (487)
T ss_pred             cCceeEEEecccCCeEEEecCCCceEEEEEcCC--cEEEEEecCCcceeEeeccccCCC-eEEEecCCCceEEEEEeccC
Confidence            4455444 5667788999999999999999974  334558999999999999998654 48999999999999999987


Q ss_pred             -eEEEEeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCC-eeeEEEecCCcceEEEEEcCCCCEEEEEeCCCeEEE
Q psy4650         113 -TCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTH-RLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLL  190 (381)
Q Consensus       113 -~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~-~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i  190 (381)
                       ..+.++. |..+|..+.+-|.|..+++++. ..+++||+-+| +.+..+..|...|+|+.+..++..|.+|+-|+.+++
T Consensus       187 ~~~v~eln-hg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKV  264 (487)
T KOG0310|consen  187 TSRVVELN-HGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKV  264 (487)
T ss_pred             CceeEEec-CCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEE
Confidence             5666675 8999999999999999999875 47999999955 455555559999999999999999999999999999


Q ss_pred             EecCCCceEEEecCCCEEEEEecCceeecccccCCccccccCCceEEeeehHHHHHh
Q psy4650         191 KVGREEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSVHVTIKY  247 (381)
Q Consensus       191 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~d~~~~  247 (381)
                                ||..+-+.+.......+.-       .++.+||++.++.|..++...
T Consensus       265 ----------fd~t~~Kvv~s~~~~~pvL-------siavs~dd~t~viGmsnGlv~  304 (487)
T KOG0310|consen  265 ----------FDTTNYKVVHSWKYPGPVL-------SIAVSPDDQTVVIGMSNGLVS  304 (487)
T ss_pred             ----------EEccceEEEEeeeccccee-------eEEecCCCceEEEecccceee
Confidence                      5543333333222111111       144568888888888876443

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.84  E-value=1.9e-19  Score=179.78  Aligned_cols=200  Identities=15%  Similarity=0.120  Sum_probs=153.5

Q ss_pred             eeeecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeee-CCCccEEEEEcCCCeEEEEECCCCeEEE
Q psy4650          38 DITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYH-GGDKPYLISGADDRLVKIWDYQNKTCVQ  116 (381)
Q Consensus        38 ~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~-~~~~~~l~s~~~d~~v~vwd~~~~~~~~  116 (381)
                      .+.+.+....++++++.||+|++||...  ...+..+.+|.+.|++++|+| ++.  +|++|+.|++|++||+.++..+.
T Consensus       537 ~l~~~~~~~~~las~~~Dg~v~lWd~~~--~~~~~~~~~H~~~V~~l~~~p~~~~--~L~Sgs~Dg~v~iWd~~~~~~~~  612 (793)
T PLN00181        537 GICWNSYIKSQVASSNFEGVVQVWDVAR--SQLVTEMKEHEKRVWSIDYSSADPT--LLASGSDDGSVKLWSINQGVSIG  612 (793)
T ss_pred             eEEeccCCCCEEEEEeCCCeEEEEECCC--CeEEEEecCCCCCEEEEEEcCCCCC--EEEEEcCCCEEEEEECCCCcEEE
Confidence            4455554466899999999999999863  456778899999999999997 444  89999999999999999998888


Q ss_pred             EeccCCCCEEEEEEec-CCCEEEEEeCCCCEEEEeCCCCe-eeEEEecCCcceEEEEEcCCCCEEEEEeCCCeEEEEecC
Q psy4650         117 TLEGHGQNISAVCFHP-ELPIVITGSEDGSVRVWHSGTHR-LEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKVGR  194 (381)
Q Consensus       117 ~~~~~~~~v~~~~~~p-~~~~l~s~~~d~~i~vwd~~~~~-~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~~~  194 (381)
                      .+..+ ..+.++.|++ ++..+++|+.|+.|++||++++. ....+.+|...|.++.|. ++..+++++.|+.+++|+..
T Consensus       613 ~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~  690 (793)
T PLN00181        613 TIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLS  690 (793)
T ss_pred             EEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCC
Confidence            88755 6789999964 68899999999999999998765 466778899999999997 67899999999999995422


Q ss_pred             CCceEEEecCCCEEEEEecCceeecccccCCccccccCCceEEeeehHHHHHhccCCCc
Q psy4650         195 EEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSVHVTIKYRLDISD  253 (381)
Q Consensus       195 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~d~~~~~~d~~~  253 (381)
                      ...    ......++.....+.      .....+.+++++.++++++.++..+.|+...
T Consensus       691 ~~~----~~~~~~~l~~~~gh~------~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~  739 (793)
T PLN00181        691 MSI----SGINETPLHSFMGHT------NVKNFVGLSVSDGYIATGSETNEVFVYHKAF  739 (793)
T ss_pred             CCc----cccCCcceEEEcCCC------CCeeEEEEcCCCCEEEEEeCCCEEEEEECCC
Confidence            110    000112222221111      1111246788999999999999999998643

>KOG0293|consensus

Probab=99.84  E-value=6.7e-20  Score=156.40  Aligned_cols=208  Identities=14%  Similarity=0.125  Sum_probs=149.5

Q ss_pred             eeeeecCCCceEEEEEecCCeEEEecCCCc-cceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEE
Q psy4650          37 VDITTNKDMIEYKISYQESSRVKAFNPIQV-ATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCV  115 (381)
Q Consensus        37 ~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~-~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~  115 (381)
                      .-+.++++ +.|+++++.|.+..+|..... .-.+.+++.||..+|..+.||||..  ++++|+.|..+++||+.+|..+
T Consensus       228 Wfl~FS~n-GkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdr--yLlaCg~~e~~~lwDv~tgd~~  304 (519)
T KOG0293|consen  228 WFLQFSHN-GKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDR--YLLACGFDEVLSLWDVDTGDLR  304 (519)
T ss_pred             EEEEEcCC-CeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCC--eEEecCchHheeeccCCcchhh
Confidence            44555555 789999999999999987432 2356788999999999999999766  8999999999999999999987


Q ss_pred             EEec-cCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEecC-CcceEEEEEcCCCC----------------
Q psy4650         116 QTLE-GHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYG-LERVWTISSLKGSN----------------  177 (381)
Q Consensus       116 ~~~~-~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~-~~~v~~v~~~~~~~----------------  177 (381)
                      ..+. +|...+.+.+|.|||..+++|+.|+++..||++... .....+. ...|.+++.+++|+                
T Consensus       305 ~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~-~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~  383 (519)
T KOG0293|consen  305 HLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNI-LGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNR  383 (519)
T ss_pred             hhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcch-hhcccccccceeEEEEEcCCCcEEEEEecccceeeech
Confidence            7774 356789999999999999999999999999986422 2222221 12344444444444                


Q ss_pred             -------------------------EEEEEeCCCeEEEEe-----------------------------------cCCCc
Q psy4650         178 -------------------------NVAIGYDEGSVLLKV-----------------------------------GREEP  197 (381)
Q Consensus       178 -------------------------~l~~~~~dg~v~i~~-----------------------------------~~~~~  197 (381)
                                               ++.+.-.+..+++|+                                   +.|..
T Consensus       384 e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~k  463 (519)
T KOG0293|consen  384 EARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSK  463 (519)
T ss_pred             hhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCce
Confidence                                     444444444444454                                   23456


Q ss_pred             eEEEecCCCEEEEEecCceeecccccCCccccccC-CceEEeeehHHHHHhccCCCcC
Q psy4650         198 AVSMDVNGCKIIWARHSEVQQANLKTMPEVFENIT-AGVVLTLSVHVTIKYRLDISDS  254 (381)
Q Consensus       198 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-dg~~l~~~~~d~~~~~~d~~~~  254 (381)
                      ++.|+..+|+++..+..+....+..      +++| +-..++++++|+++.+|.+..+
T Consensus       464 vyIWhr~sgkll~~LsGHs~~vNcV------swNP~~p~m~ASasDDgtIRIWg~~~~  515 (519)
T KOG0293|consen  464 VYIWHRISGKLLAVLSGHSKTVNCV------SWNPADPEMFASASDDGTIRIWGPSDN  515 (519)
T ss_pred             EEEEEccCCceeEeecCCcceeeEE------ecCCCCHHHhhccCCCCeEEEecCCcc
Confidence            6667777777776666655444433      3444 5678889999999999987654

>KOG0973|consensus

Probab=99.84  E-value=6.8e-20  Score=173.64  Aligned_cols=196  Identities=23%  Similarity=0.249  Sum_probs=156.9

Q ss_pred             ceeeeecCCCceEEEEEe--cCCeEEEecCCCc----------cceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCe
Q psy4650          36 KVDITTNKDMIEYKISYQ--ESSRVKAFNPIQV----------ATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRL  103 (381)
Q Consensus        36 ~~~i~~~~~~~~~~~s~~--~d~~v~i~~~~~~----------~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~  103 (381)
                      .+.|-.+++ +.-+++|+  .|+.+++|+....          ....+.++..|.+.|.|+.|+|+|.  +||+||.|+.
T Consensus        16 IfSIdv~pd-g~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~--~lAsGSDD~~   92 (942)
T KOG0973|consen   16 IFSIDVHPD-GVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGS--YLASGSDDRL   92 (942)
T ss_pred             EEEEEecCC-ceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCC--eEeeccCcce
Confidence            566767777 55778888  8999999987432          2345667788999999999999988  8999999999


Q ss_pred             EEEEECCC------------------CeEEEEeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEecCCc
Q psy4650         104 VKIWDYQN------------------KTCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLE  165 (381)
Q Consensus       104 v~vwd~~~------------------~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~  165 (381)
                      |.+|....                  .++...+.+|.+.|..++|+|++.++++++.|++|.+|+..+...+..+.+|.+
T Consensus        93 v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s  172 (942)
T KOG0973|consen   93 VMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQS  172 (942)
T ss_pred             EEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeeecccc
Confidence            99999872                  135677899999999999999999999999999999999999999999999999


Q ss_pred             ceEEEEEcCCCCEEEEEeCCCeEEEEecCCCceEEEecCCCEEEEEecCceeecccccCCccccccCCceEEeeehHHH
Q psy4650         166 RVWTISSLKGSNNVAIGYDEGSVLLKVGREEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSVHVT  244 (381)
Q Consensus       166 ~v~~v~~~~~~~~l~~~~~dg~v~i~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~d~  244 (381)
                      .|-.+.|.|-|+++|+-++|+++++|...+     |     ...-.+........+..+-.-..|+|||.+|++....+
T Consensus       173 ~VKGvs~DP~Gky~ASqsdDrtikvwrt~d-----w-----~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n  241 (942)
T KOG0973|consen  173 LVKGVSWDPIGKYFASQSDDRTLKVWRTSD-----W-----GIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVN  241 (942)
T ss_pred             cccceEECCccCeeeeecCCceEEEEEccc-----c-----eeeEeeccchhhCCCcceeeecccCCCcCeecchhhcc
Confidence            999999999999999999999999955222     1     11222222222233333333368999999999877654

>KOG0308|consensus

Probab=99.84  E-value=2.2e-20  Score=167.72  Aligned_cols=211  Identities=20%  Similarity=0.304  Sum_probs=164.0

Q ss_pred             CChhhHHHHhhhcce--eeeecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEe-eeCCCccEEEEEc
Q psy4650          23 LTETDIETIVRETKV--DITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDY-YHGGDKPYLISGA   99 (381)
Q Consensus        23 ~~~~~~~~~~~~~~~--~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~-~~~~~~~~l~s~~   99 (381)
                      +++|.+..+..+...  ++.-..+ ++.+++++.|.+|++|++......++.++..|.+.|.|+++ .++..  ++||||
T Consensus        61 ~s~~~~asme~HsDWVNDiiL~~~-~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~--lvaSgG  137 (735)
T KOG0308|consen   61 PSTPYIASMEHHSDWVNDIILCGN-GKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNE--LVASGG  137 (735)
T ss_pred             cccchhhhhhhhHhHHhhHHhhcC-CCceEEecCCceEEEeecccCcchhHhhhhcccchheeeeecccCce--eEEecC
Confidence            345556666555443  3333332 55899999999999999976556788899999999999999 55444  899999


Q ss_pred             CCCeEEEEECCCCeE----------EEEec-cCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEecCCcceE
Q psy4650         100 DDRLVKIWDYQNKTC----------VQTLE-GHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVW  168 (381)
Q Consensus       100 ~d~~v~vwd~~~~~~----------~~~~~-~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~  168 (381)
                      -|+.|.+||+.++..          ...+. |+..+|.+++.++.|..+++|+..+.+++||.+++..+..+.+|+..|.
T Consensus       138 LD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr  217 (735)
T KOG0308|consen  138 LDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVR  217 (735)
T ss_pred             CCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceE
Confidence            999999999997722          22233 7888999999999999999999999999999999999999999999999


Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEe-cCCCceEEEecCCCEEEEEecCceeecccccCCccccccCCceEEeeehHHHHHh
Q psy4650         169 TISSLKGSNNVAIGYDEGSVLLKV-GREEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSVHVTIKY  247 (381)
Q Consensus       169 ~v~~~~~~~~l~~~~~dg~v~i~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~d~~~~  247 (381)
                      .+..+++|+.+++++.||+|++|+ +.-..+.++-.++.. +|.....                |+=..+++|+.++.++
T Consensus       218 ~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~-VWaL~~~----------------~sf~~vYsG~rd~~i~  280 (735)
T KOG0308|consen  218 VLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEG-VWALQSS----------------PSFTHVYSGGRDGNIY  280 (735)
T ss_pred             EEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCc-eEEEeeC----------------CCcceEEecCCCCcEE
Confidence            999999999999999999999975 333445555554443 5554332                4556666777777666


Q ss_pred             ccCCCc
Q psy4650         248 RLDISD  253 (381)
Q Consensus       248 ~~d~~~  253 (381)
                      .-+++.
T Consensus       281 ~Tdl~n  286 (735)
T KOG0308|consen  281 RTDLRN  286 (735)
T ss_pred             ecccCC
Confidence            666654

>KOG0277|consensus

Probab=99.84  E-value=7.4e-20  Score=146.84  Aligned_cols=160  Identities=14%  Similarity=0.133  Sum_probs=136.1

Q ss_pred             HHhhhcceeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEEC
Q psy4650          30 TIVRETKVDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDY  109 (381)
Q Consensus        30 ~~~~~~~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~  109 (381)
                      ++.+...|.+-.++.....+++++-|++||+|++..  ..-+.++.||...|....|+|... ++++++|.|+++++||+
T Consensus       101 kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r--~~Sv~Tf~gh~~~Iy~a~~sp~~~-nlfas~Sgd~~l~lwdv  177 (311)
T KOG0277|consen  101 KEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNR--PNSVQTFNGHNSCIYQAAFSPHIP-NLFASASGDGTLRLWDV  177 (311)
T ss_pred             HhhhhheEEeccccccceeEEeeccCCceEeecCCC--CcceEeecCCccEEEEEecCCCCC-CeEEEccCCceEEEEEe
Confidence            445566677777776677888889999999999974  556788999999999999999655 49999999999999999


Q ss_pred             CCCeEEEEeccCCCCEEEEEEecCC-CEEEEEeCCCCEEEEeCCCC-eeeEEEecCCcceEEEEEcCCC-CEEEEEeCCC
Q psy4650         110 QNKTCVQTLEGHGQNISAVCFHPEL-PIVITGSEDGSVRVWHSGTH-RLEISLTYGLERVWTISSLKGS-NNVAIGYDEG  186 (381)
Q Consensus       110 ~~~~~~~~~~~~~~~v~~~~~~p~~-~~l~s~~~d~~i~vwd~~~~-~~~~~~~~~~~~v~~v~~~~~~-~~l~~~~~dg  186 (381)
                      +.......+..|...+.|..|+... ..+++|+.|+.|+.||++.- .++..+.+|.-.|+.++|+|.. ..|++++-|-
T Consensus       178 r~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDm  257 (311)
T KOG0277|consen  178 RSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDM  257 (311)
T ss_pred             cCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccc
Confidence            8765455588999999999999854 58899999999999999864 4688889999999999999974 5899999999


Q ss_pred             eEEEEe
Q psy4650         187 SVLLKV  192 (381)
Q Consensus       187 ~v~i~~  192 (381)
                      ++++|+
T Consensus       258 T~riw~  263 (311)
T KOG0277|consen  258 TVRIWD  263 (311)
T ss_pred             eEEecc
Confidence            999954

>KOG1332|consensus

Probab=99.83  E-value=2.3e-19  Score=143.28  Aligned_cols=206  Identities=19%  Similarity=0.138  Sum_probs=151.7

Q ss_pred             ceEEEEEecCCeEEEecCCCccc-eeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCe--EEEEeccCC
Q psy4650          46 IEYKISYQESSRVKAFNPIQVAT-LILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKT--CVQTLEGHG  122 (381)
Q Consensus        46 ~~~~~s~~~d~~v~i~~~~~~~~-~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~--~~~~~~~~~  122 (381)
                      +.-|++++.|++|+||..+.... ..+.+|.||.++|..++|...-....||+|+.||.|.||...++.  .......|.
T Consensus        23 gkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~  102 (299)
T KOG1332|consen   23 GKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHS  102 (299)
T ss_pred             cceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhc
Confidence            45699999999999999876544 788899999999999999774444599999999999999998884  345567899


Q ss_pred             CCEEEEEEecCC--CEEEEEeCCCCEEEEeCCCC-e--eeEEEecCCcceEEEEEcCC---C-----------CEEEEEe
Q psy4650         123 QNISAVCFHPEL--PIVITGSEDGSVRVWHSGTH-R--LEISLTYGLERVWTISSLKG---S-----------NNVAIGY  183 (381)
Q Consensus       123 ~~v~~~~~~p~~--~~l~s~~~d~~i~vwd~~~~-~--~~~~~~~~~~~v~~v~~~~~---~-----------~~l~~~~  183 (381)
                      +.|++++|.|.+  -.|++++.||.|.|.+.+.. .  .......|.-.|++++|.|.   |           +.|++|+
T Consensus       103 ~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgG  182 (299)
T KOG1332|consen  103 ASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGG  182 (299)
T ss_pred             ccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccC
Confidence            999999999954  48899999999999988754 2  23345678899999999986   4           5699999


Q ss_pred             CCCeEEEEecCC-----------------------------CceEEEecCCCEEEEEecCceeec---ccccC---Cccc
Q psy4650         184 DEGSVLLKVGRE-----------------------------EPAVSMDVNGCKIIWARHSEVQQA---NLKTM---PEVF  228 (381)
Q Consensus       184 ~dg~v~i~~~~~-----------------------------~~~~~~d~~~~~~~~~~~~~~~~~---~~~~~---~~~~  228 (381)
                      .|..|++|...+                             -.+.+-..++...+|....+...-   -+..+   ....
T Consensus       183 cDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~v  262 (299)
T KOG1332|consen  183 CDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRV  262 (299)
T ss_pred             CccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEE
Confidence            999999987433                             122333444555566554332111   11111   1114


Q ss_pred             cccCCceEEeeehHHHHHhccCC
Q psy4650         229 ENITAGVVLTLSVHVTIKYRLDI  251 (381)
Q Consensus       229 ~~~~dg~~l~~~~~d~~~~~~d~  251 (381)
                      .|+..|..|++...++..+.|..
T Consensus       263 SWS~sGn~LaVs~GdNkvtlwke  285 (299)
T KOG1332|consen  263 SWSLSGNILAVSGGDNKVTLWKE  285 (299)
T ss_pred             EEeccccEEEEecCCcEEEEEEe
Confidence            66777888887777777776654

>KOG0274|consensus

Probab=99.83  E-value=1.5e-19  Score=168.41  Aligned_cols=183  Identities=22%  Similarity=0.310  Sum_probs=156.4

Q ss_pred             CceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEEEeccCCCC
Q psy4650          45 MIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQN  124 (381)
Q Consensus        45 ~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~  124 (381)
                      +..++++|+.|.++++||..  ...+.+.+.||.+.|.++...+  .  .+++|+.|.+|++|++.++..+..+.+|.++
T Consensus       260 ~~~~lvsgS~D~t~rvWd~~--sg~C~~~l~gh~stv~~~~~~~--~--~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~  333 (537)
T KOG0274|consen  260 GGDKLVSGSTDKTERVWDCS--TGECTHSLQGHTSSVRCLTIDP--F--LLVSGSRDNTVKVWDVTNGACLNLLRGHTGP  333 (537)
T ss_pred             CCCEEEEEecCCcEEeEecC--CCcEEEEecCCCceEEEEEccC--c--eEeeccCCceEEEEeccCcceEEEecccccc
Confidence            46689999999999999976  5788899999999999998865  3  6889999999999999999999999999999


Q ss_pred             EEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCceEEEecC
Q psy4650         125 ISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKVGREEPAVSMDVN  204 (381)
Q Consensus       125 v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~~~~~~~~~~d~~  204 (381)
                      |.++..+  +..+++|+.|++|++||..+++++.++.+|...|.++.+.+. ..+.+|+.|+.+++          ||..
T Consensus       334 V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~Ikv----------Wdl~  400 (537)
T KOG0274|consen  334 VNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKV----------WDLR  400 (537)
T ss_pred             EEEEEec--CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEe----------ecCC
Confidence            9999997  889999999999999999999999999999999999988766 89999999999999          7777


Q ss_pred             CC-EEEEEecCceeecccccCCccccccCCceEEeeehHHHHHhccCCCcC
Q psy4650         205 GC-KIIWARHSEVQQANLKTMPEVFENITAGVVLTLSVHVTIKYRLDISDS  254 (381)
Q Consensus       205 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~d~~~~~~d~~~~  254 (381)
                      +. +++.....+....        ......+..|.++..|+.++.||....
T Consensus       401 ~~~~c~~tl~~h~~~v--------~~l~~~~~~Lvs~~aD~~Ik~WD~~~~  443 (537)
T KOG0274|consen  401 TKRKCIHTLQGHTSLV--------SSLLLRDNFLVSSSADGTIKLWDAEEG  443 (537)
T ss_pred             chhhhhhhhcCCcccc--------cccccccceeEeccccccEEEeecccC
Confidence            66 4444333332221        122356889999999999999987654

>KOG0313|consensus

Probab=99.83  E-value=5.4e-20  Score=155.37  Aligned_cols=204  Identities=20%  Similarity=0.227  Sum_probs=157.3

Q ss_pred             CCceEEEEEecCCeEEEecCCCccce--eeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCC----------
Q psy4650          44 DMIEYKISYQESSRVKAFNPIQVATL--ILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQN----------  111 (381)
Q Consensus        44 ~~~~~~~s~~~d~~v~i~~~~~~~~~--~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~----------  111 (381)
                      .....+++++.|.++++|..+.....  .++.-+||...|.++...+++.  .+++||.|.++++|+..+          
T Consensus       157 ~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgt--r~~SgS~D~~lkiWs~~~~~~~~~E~~s  234 (423)
T KOG0313|consen  157 SSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGT--RFCSGSWDTMLKIWSVETDEEDELESSS  234 (423)
T ss_pred             CccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCC--eEEeecccceeeecccCCCccccccccc
Confidence            33447899999999999977543222  2333459999999999999887  799999999999999321          


Q ss_pred             ---------------CeEEEEeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEecCCcceEEEEEcCCC
Q psy4650         112 ---------------KTCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGS  176 (381)
Q Consensus       112 ---------------~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~  176 (381)
                                     +.++..+.||+++|.++.|++ ...+.++++|.+|+.||+.+|....++.+. ....++.++|..
T Consensus       235 ~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~-ksl~~i~~~~~~  312 (423)
T KOG0313|consen  235 NRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTN-KSLNCISYSPLS  312 (423)
T ss_pred             hhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeecC-cceeEeeccccc
Confidence                           245667899999999999998 678899999999999999999988887744 678999999999


Q ss_pred             CEEEEEeCCCeEEEEecCCCceEEEecCCCEEEEEecCceeecccccCCcc---ccccCCc-eEEeeehHHHHHhccCCC
Q psy4650         177 NNVAIGYDEGSVLLKVGREEPAVSMDVNGCKIIWARHSEVQQANLKTMPEV---FENITAG-VVLTLSVHVTIKYRLDIS  252 (381)
Q Consensus       177 ~~l~~~~~dg~v~i~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~dg-~~l~~~~~d~~~~~~d~~  252 (381)
                      .++++|+.|..+++          ||++++.      .......+.+|..+   +.++|.. ..+++++.|+...+||++
T Consensus       313 ~Ll~~gssdr~irl----------~DPR~~~------gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvR  376 (423)
T KOG0313|consen  313 KLLASGSSDRHIRL----------WDPRTGD------GSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVR  376 (423)
T ss_pred             ceeeecCCCCceee----------cCCCCCC------CceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEec
Confidence            99999999999999          7775442      11111122233222   3456654 567789999999999999


Q ss_pred             cChhHHHHHHHHHhh
Q psy4650         253 DSHRSVAKLRAAAET  267 (381)
Q Consensus       253 ~~~~~~~~l~~~~e~  267 (381)
                      ....++..+..+.++
T Consensus       377 S~k~plydI~~h~DK  391 (423)
T KOG0313|consen  377 STKAPLYDIAGHNDK  391 (423)
T ss_pred             cCCCcceeeccCCce
Confidence            877777777666443

>KOG0267|consensus

Probab=99.83  E-value=1e-20  Score=171.69  Aligned_cols=179  Identities=21%  Similarity=0.345  Sum_probs=156.2

Q ss_pred             ceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEEEeccCCCCE
Q psy4650          46 IEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNI  125 (381)
Q Consensus        46 ~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v  125 (381)
                      ...+++|+.+|+|++||++  ....+++|.||...+.++.|+|-+.  +.++|+.|+.+++||.+...+...+++|...|
T Consensus        82 E~LlaagsasgtiK~wDle--eAk~vrtLtgh~~~~~sv~f~P~~~--~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv  157 (825)
T KOG0267|consen   82 ERLLAAGSASGTIKVWDLE--EAKIVRTLTGHLLNITSVDFHPYGE--FFASGSTDTDLKIWDIRKKGCSHTYKSHTRVV  157 (825)
T ss_pred             hhhhcccccCCceeeeehh--hhhhhhhhhccccCcceeeeccceE--EeccccccccceehhhhccCceeeecCCccee
Confidence            4578899999999999998  4677899999999999999999887  78999999999999999888999999999999


Q ss_pred             EEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCceEEEecCC
Q psy4650         126 SAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKVGREEPAVSMDVNG  205 (381)
Q Consensus       126 ~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~~~~~~~~~~d~~~  205 (381)
                      .++.|+|+|+++++|+.|.++++||...|+....+..|.+.+.++.|+|..-.++.|+.|+++++          ||..+
T Consensus       158 ~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f----------~dlet  227 (825)
T KOG0267|consen  158 DVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRF----------WDLET  227 (825)
T ss_pred             EEEeecCCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceeee----------eccce
Confidence            99999999999999999999999999999999999999999999999999999999999999999          66655


Q ss_pred             CEEEEEecCceeecccccCCccccccCCceEEeeehHHH
Q psy4650         206 CKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSVHVT  244 (381)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~d~  244 (381)
                      -..+-....+     ..+... ..|+|+|..+.++.+..
T Consensus       228 fe~I~s~~~~-----~~~v~~-~~fn~~~~~~~~G~q~s  260 (825)
T KOG0267|consen  228 FEVISSGKPE-----TDGVRS-LAFNPDGKIVLSGEQIS  260 (825)
T ss_pred             eEEeeccCCc-----cCCcee-eeecCCceeeecCchhh
Confidence            5554443332     222222 46789999988887764

>KOG0308|consensus

Probab=99.83  E-value=1.4e-20  Score=169.03  Aligned_cols=199  Identities=17%  Similarity=0.251  Sum_probs=164.6

Q ss_pred             eeeecCCCceEEEEEecCCeEEEecCCCccce----eeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCC-
Q psy4650          38 DITTNKDMIEYKISYQESSRVKAFNPIQVATL----ILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNK-  112 (381)
Q Consensus        38 ~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~----~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~-  112 (381)
                      .+..+..++.|+++|+.||.|++|+..+....    .+..++.|.+.|..+....++.  .|+|+|.|-+|++|+...+ 
T Consensus        29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~--tlIS~SsDtTVK~W~~~~~~  106 (735)
T KOG0308|consen   29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGK--TLISASSDTTVKVWNAHKDN  106 (735)
T ss_pred             hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCC--ceEEecCCceEEEeecccCc
Confidence            34445556779999999999999998664432    5778899999999999887665  6999999999999999877 


Q ss_pred             -eEEEEeccCCCCEEEEEE-ecCCCEEEEEeCCCCEEEEeCCCCee--eEE--------Ee-cCCcceEEEEEcCCCCEE
Q psy4650         113 -TCVQTLEGHGQNISAVCF-HPELPIVITGSEDGSVRVWHSGTHRL--EIS--------LT-YGLERVWTISSLKGSNNV  179 (381)
Q Consensus       113 -~~~~~~~~~~~~v~~~~~-~p~~~~l~s~~~d~~i~vwd~~~~~~--~~~--------~~-~~~~~v~~v~~~~~~~~l  179 (381)
                       -+..++..|.+.|.|+++ .++...+|+||-|+.|.+||+.+|..  +.+        +. ++...+++++..+.|..+
T Consensus       107 ~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~i  186 (735)
T KOG0308|consen  107 TFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTII  186 (735)
T ss_pred             chhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEE
Confidence             577889999999999999 77888999999999999999998732  322        23 677889999999999999


Q ss_pred             EEEeCCCeEEEEecCCCceEEEecCCCEEEEEecCceeecccccCCccccccCCceEEeeehHHHHHhccCCCcC
Q psy4650         180 AIGYDEGSVLLKVGREEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSVHVTIKYRLDISDS  254 (381)
Q Consensus       180 ~~~~~dg~v~i~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~d~~~~~~d~~~~  254 (381)
                      ++|+..+.+++          ||+++++.+-.+..+  ..++...    -.++||..+.+++.|+.+..||+...
T Consensus       187 vsGgtek~lr~----------wDprt~~kimkLrGH--TdNVr~l----l~~dDGt~~ls~sSDgtIrlWdLgqQ  245 (735)
T KOG0308|consen  187 VSGGTEKDLRL----------WDPRTCKKIMKLRGH--TDNVRVL----LVNDDGTRLLSASSDGTIRLWDLGQQ  245 (735)
T ss_pred             EecCcccceEE----------eccccccceeeeecc--ccceEEE----EEcCCCCeEeecCCCceEEeeecccc
Confidence            99999999999          999998888776643  3344332    33689999999999999999998643

>PTZ00186 heat shock 70 kDa precursor protein; Provisional

Probab=99.83  E-value=1.9e-21  Score=186.28  Aligned_cols=287  Identities=14%  Similarity=0.190  Sum_probs=183.7

Q ss_pred             CchhhhHHHhhhhhcccccccCCChhhHHHHhhhcceeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeeccc---
Q psy4650           1 KSRLISQAKNTIIKNKRALNTELTETDIETIVRETKVDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGH---   77 (381)
Q Consensus         1 ~~~~~~~~~~t~~~~k~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h---   77 (381)
                      |+++.+||.||++.+||++|++++++.++...+.++|.+...+++..++..+  ++  +.|.+.+....++..++..   
T Consensus        79 k~~~~~~p~~ti~~~KRliG~~~~d~~v~~~~~~~p~~vv~~~~~~~~i~~~--~~--~~~speeisa~iL~~Lk~~Ae~  154 (657)
T PTZ00186         79 KRQAITNPQSTFYAVKRLIGRRFEDEHIQKDIKNVPYKIVRAGNGDAWVQDG--NG--KQYSPSQIGAFVLEKMKETAEN  154 (657)
T ss_pred             HHhhhhCchhHHHHHHHHhccccccHHHHHhhccCcEEEEEcCCCceEEEeC--CC--eEEcHHHHHHHHHHHHHHHHHH
Confidence            3567899999999999999999999999999999999998776654443321  22  4677776666665555421   


Q ss_pred             -c-ccEEEEEee-e----CCCccEEEEEcCCCeEEEEECCCCeEEEEeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEe
Q psy4650          78 -E-KGVNCVDYY-H----GGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWH  150 (381)
Q Consensus        78 -~-~~v~~~~~~-~----~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd  150 (381)
                       . ..|..+... |    +.++..+.-++        .+..-..++.+..+++...+.....        ..++.+.|+|
T Consensus       155 ~lg~~v~~aVITVPayF~~~qR~at~~Aa--------~~AGl~v~rlInEPtAAAlayg~~~--------~~~~~vlV~D  218 (657)
T PTZ00186        155 FLGHKVSNAVVTCPAYFNDAQRQATKDAG--------TIAGLNVIRVVNEPTAAALAYGMDK--------TKDSLIAVYD  218 (657)
T ss_pred             HhCCccceEEEEECCCCChHHHHHHHHHH--------HHcCCCeEEEEcChHHHHHHHhccC--------CCCCEEEEEE
Confidence             1 122221111 1    00000000000        0011122333444333222211111        1357899999


Q ss_pred             CCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCceEEEecCCCEEEEEecCceeecccccCCccccc
Q psy4650         151 SGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKVGREEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFEN  230 (381)
Q Consensus       151 ~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (381)
                      +..|+...++-.....+..+        ++++                  .|                ..++|...    
T Consensus       219 lGGGT~DvSil~~~~g~~~V--------~at~------------------Gd----------------~~LGG~Df----  252 (657)
T PTZ00186        219 LGGGTFDISVLEIAGGVFEV--------KATN------------------GD----------------THLGGEDF----  252 (657)
T ss_pred             CCCCeEEEEEEEEeCCEEEE--------EEec------------------CC----------------CCCCchhH----
Confidence            99988765442111111100        1110                  01                12222221    


Q ss_pred             cCCceEEeeehHHHHHhccCCCcChhHHHHHHHHHhhhhhhccccceeeEEEecccCC----cccccccChHHHHHHHHH
Q psy4650         231 ITAGVVLTLSVHVTIKYRLDISDSHRSVAKLRAAAETCMHVLSTLQSSNVFVESLYDG----LDFHHNVSRARFESLIGG  306 (381)
Q Consensus       231 ~~dg~~l~~~~~d~~~~~~d~~~~~~~~~~l~~~~e~ak~~lS~~~~~~i~~~~l~~g----~~~~~~itr~~fe~l~~~  306 (381)
                       +....-++.......+..|+..+.+++++|+.+||++|+.||...++.+.++.++.+    .++...+||++||+++.+
T Consensus       253 -D~~l~~~~~~~f~~~~~~d~~~~~~~~~rL~~~aEkaK~~LS~~~~~~i~i~~i~~~~~g~~~~~~~ItR~efe~l~~~  331 (657)
T PTZ00186        253 -DLALSDYILEEFRKTSGIDLSKERMALQRVREAAEKAKCELSSAMETEVNLPFITANADGAQHIQMHISRSKFEGITQR  331 (657)
T ss_pred             -HHHHHHHHHHHHhhhcCCCcccCHHHHHHHHHHHHHHHHHhCCCCceEEEEeeeccCCCCCcceEEEecHHHHHHHHHH
Confidence             011111122333445556777788999999999999999999999999999876543    458899999999999999


Q ss_pred             HhhhhhhhhHhhhccccceeeEeeccccCcceEEeecHHHHHHHHHHHHHH
Q psy4650         307 LLTSFVQPCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIGGLLTS  357 (381)
Q Consensus       307 l~~~~~~~~~~~Ls~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~  357 (381)
                      ++.++..+++++|.+   +.+...++++++++||++++|.++++++++|++
T Consensus       332 l~~r~~~~v~~~L~~---a~~~~~dId~VvLVGGssriP~V~~~l~~~fg~  379 (657)
T PTZ00186        332 LIERSIAPCKQCMKD---AGVELKEINDVVLVGGMTRMPKVVEEVKKFFQK  379 (657)
T ss_pred             HHHHHHHHHHHHHHH---cCCChhhCCEEEEECCcccChHHHHHHHHHhCC
Confidence            999999999999987   567778889999999999999999999999985

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.82  E-value=1.1e-18  Score=174.18  Aligned_cols=206  Identities=16%  Similarity=0.146  Sum_probs=153.7

Q ss_pred             ceeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeC-CCccEEEEEcCCCeEEEEECCCCe-
Q psy4650          36 KVDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHG-GDKPYLISGADDRLVKIWDYQNKT-  113 (381)
Q Consensus        36 ~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~-~~~~~l~s~~~d~~v~vwd~~~~~-  113 (381)
                      .+.+.+.+..+.++++|+.|++|++||+..  ...+..+..| ..|.++.|++. +.  ++++|+.|+.|++||+.++. 
T Consensus       578 V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~--~~~~~~~~~~-~~v~~v~~~~~~g~--~latgs~dg~I~iwD~~~~~~  652 (793)
T PLN00181        578 VWSIDYSSADPTLLASGSDDGSVKLWSINQ--GVSIGTIKTK-ANICCVQFPSESGR--SLAFGSADHKVYYYDLRNPKL  652 (793)
T ss_pred             EEEEEEcCCCCCEEEEEcCCCEEEEEECCC--CcEEEEEecC-CCeEEEEEeCCCCC--EEEEEeCCCeEEEEECCCCCc
Confidence            346666665577999999999999999964  3455666654 68999999653 44  89999999999999998765 


Q ss_pred             EEEEeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCC------eeeEEEecCCcceEEEEEcCCCCEEEEEeCCCe
Q psy4650         114 CVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTH------RLEISLTYGLERVWTISSLKGSNNVAIGYDEGS  187 (381)
Q Consensus       114 ~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~------~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~  187 (381)
                      ++..+.+|...|.++.|. ++..+++++.|++|++||++.+      ..+..+.+|...+.+++|+|++.++++|+.||.
T Consensus       653 ~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~  731 (793)
T PLN00181        653 PLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNE  731 (793)
T ss_pred             cceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCE
Confidence            567788999999999997 6789999999999999999743      567788899999999999999999999999999


Q ss_pred             EEEEecCC-CceEEEecCCCEEEEEecCceeecccccCCccccccCCceEEeeehHHHHHhccCC
Q psy4650         188 VLLKVGRE-EPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSVHVTIKYRLDI  251 (381)
Q Consensus       188 v~i~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~d~~~~~~d~  251 (381)
                      +++|.... .++.+|.......+.....    .........++|+|++..++++..++.+.+|++
T Consensus       732 v~iw~~~~~~~~~s~~~~~~~~~~~~~~----~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~  792 (793)
T PLN00181        732 VFVYHKAFPMPVLSYKFKTIDPVSGLEV----DDASQFISSVCWRGQSSTLVAANSTGNIKILEM  792 (793)
T ss_pred             EEEEECCCCCceEEEecccCCccccccc----CCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence            99955322 1222222211111110000    000011122678899999999999998888764

>KOG0643|consensus

Probab=99.82  E-value=8.9e-19  Score=141.66  Aligned_cols=257  Identities=14%  Similarity=0.172  Sum_probs=185.6

Q ss_pred             CCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEEEeccCCC
Q psy4650          44 DMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQ  123 (381)
Q Consensus        44 ~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~  123 (381)
                      ..+..|++++.|.+..+|-..  ....+.++.||++.|+|+....+..  .+++|+.|.++++||+++|+++..++ ...
T Consensus        20 ~eGDLlFscaKD~~~~vw~s~--nGerlGty~GHtGavW~~Did~~s~--~liTGSAD~t~kLWDv~tGk~la~~k-~~~   94 (327)
T KOG0643|consen   20 REGDLLFSCAKDSTPTVWYSL--NGERLGTYDGHTGAVWCCDIDWDSK--HLITGSADQTAKLWDVETGKQLATWK-TNS   94 (327)
T ss_pred             CCCcEEEEecCCCCceEEEec--CCceeeeecCCCceEEEEEecCCcc--eeeeccccceeEEEEcCCCcEEEEee-cCC
Confidence            336699999999999999764  3567899999999999999977655  89999999999999999999999998 457


Q ss_pred             CEEEEEEecCCCEEEEEe-----CCCCEEEEeCC-------CCeeeEEEecCCcceEEEEEcCCCCEEEEEeCCCeEEEE
Q psy4650         124 NISAVCFHPELPIVITGS-----EDGSVRVWHSG-------THRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLK  191 (381)
Q Consensus       124 ~v~~~~~~p~~~~l~s~~-----~d~~i~vwd~~-------~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~  191 (381)
                      +|..+.|+++|.+++.+.     ..+.|.++|++       ...+...+..+.+.++.+.|.|-+..+++|..||.+.. 
T Consensus        95 ~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~-  173 (327)
T KOG0643|consen   95 PVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISI-  173 (327)
T ss_pred             eeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEE-
Confidence            899999999999777664     35689999998       45567778888899999999999999999999999999 


Q ss_pred             ecCCCceEEEecCCCEEEEEecCceeecccccCCccccccCCceEEeeehHHHHHhccCCCcChhHHHHHHHHHhhhhhh
Q psy4650         192 VGREEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSVHVTIKYRLDISDSHRSVAKLRAAAETCMHV  271 (381)
Q Consensus       192 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~d~~~~~~d~~~~~~~~~~l~~~~e~ak~~  271 (381)
                               ||..+|..+-...... ...   +.. +.+++|..++.+++.|.....||...-. .+.....++...-..
T Consensus       174 ---------~da~~g~~~v~s~~~h-~~~---Ind-~q~s~d~T~FiT~s~Dttakl~D~~tl~-v~Kty~te~PvN~aa  238 (327)
T KOG0643|consen  174 ---------YDARTGKELVDSDEEH-SSK---IND-LQFSRDRTYFITGSKDTTAKLVDVRTLE-VLKTYTTERPVNTAA  238 (327)
T ss_pred             ---------EEcccCceeeechhhh-ccc---ccc-ccccCCcceEEecccCccceeeecccee-eEEEeeeccccccee
Confidence                     9998887655433221 112   222 5788999999999999999999876421 111111111111112


Q ss_pred             ccccceeeEEEecccCCcccccccChHH-HHHHH-HHHhhhhhhhhHhhhccc
Q psy4650         272 LSTLQSSNVFVESLYDGLDFHHNVSRAR-FESLI-GGLLTSFVQPCMHVLSTL  322 (381)
Q Consensus       272 lS~~~~~~i~~~~l~~g~~~~~~itr~~-fe~l~-~~l~~~~~~~~~~~Ls~~  322 (381)
                      ++... ..+.+-...+..|..++-+|+- ||.-= ..++++....+|--.-..
T Consensus       239 isP~~-d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPI  290 (327)
T KOG0643|consen  239 ISPLL-DHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPI  290 (327)
T ss_pred             ccccc-ceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCc
Confidence            22222 1222223334455777777765 87654 344555555555555443

>KOG4283|consensus

Probab=99.82  E-value=2.6e-19  Score=146.62  Aligned_cols=238  Identities=14%  Similarity=0.144  Sum_probs=177.9

Q ss_pred             ccccccCCCh-hhHHHHhhhcceeeeecCCCceEEEEEecCCeEEEecCCCcc-----ceee--------EeeccccccE
Q psy4650          16 KRALNTELTE-TDIETIVRETKVDITTNKDMIEYKISYQESSRVKAFNPIQVA-----TLIL--------KTLYGHEKGV   81 (381)
Q Consensus        16 k~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~-----~~~~--------~~l~~h~~~v   81 (381)
                      .|+++...+. .++.....-....+.-.+..+.|+++|+.||.+-+||++...     ..+.        ..-.+|.-.|
T Consensus        25 rRil~L~Ln~d~d~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~i  104 (397)
T KOG4283|consen   25 RRILSLQLNNDKDFVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAI  104 (397)
T ss_pred             hhhheeeccCCcceeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeee
Confidence            4555554432 233333333344555666678899999999999999986432     1111        1123688899


Q ss_pred             EEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEEEeccCCCCEEEEEEecCC---CEEEEEeCCCCEEEEeCCCCeeeE
Q psy4650          82 NCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPEL---PIVITGSEDGSVRVWHSGTHRLEI  158 (381)
Q Consensus        82 ~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~p~~---~~l~s~~~d~~i~vwd~~~~~~~~  158 (381)
                      .++.|.|-.++ .+.++|.|.+++|||..+.+....|+ -.+.|.+-+|+|-.   .++|+|..|-.|++.|+.+|..-.
T Consensus       105 ss~~WyP~DtG-mFtssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH  182 (397)
T KOG4283|consen  105 SSAIWYPIDTG-MFTSSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSH  182 (397)
T ss_pred             eeeEEeeecCc-eeecccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCccee
Confidence            99999997665 78899999999999999988877777 56788999999944   378888899999999999999999


Q ss_pred             EEecCCcceEEEEEcCCCC-EEEEEeCCCeEEEEecC--CCceEEEecCCCEEEEEec-CceeecccccCCccccccCCc
Q psy4650         159 SLTYGLERVWTISSLKGSN-NVAIGYDEGSVLLKVGR--EEPAVSMDVNGCKIIWARH-SEVQQANLKTMPEVFENITAG  234 (381)
Q Consensus       159 ~~~~~~~~v~~v~~~~~~~-~l~~~~~dg~v~i~~~~--~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~dg  234 (381)
                      ++.+|.+.|.+|.|+|... .|++|+.||.+++|+.+  .+.....|.+.++...... ...+...+    ...+|..||
T Consensus       183 ~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkv----ngla~tSd~  258 (397)
T KOG4283|consen  183 TLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKV----NGLAWTSDA  258 (397)
T ss_pred             eeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCcccccccccccee----eeeeecccc
Confidence            9999999999999999876 57899999999999855  3567778887765433322 11111111    225788999


Q ss_pred             eEEeeehHHHHHhccCCCcChhHHH
Q psy4650         235 VVLTLSVHVTIKYRLDISDSHRSVA  259 (381)
Q Consensus       235 ~~l~~~~~d~~~~~~d~~~~~~~~~  259 (381)
                      ..+++...+.+...|........+.
T Consensus       259 ~~l~~~gtd~r~r~wn~~~G~ntl~  283 (397)
T KOG4283|consen  259 RYLASCGTDDRIRVWNMESGRNTLR  283 (397)
T ss_pred             hhhhhccCccceEEeecccCccccc
Confidence            9999999999999998766554433

>KOG0302|consensus

Probab=99.82  E-value=1.9e-19  Score=152.03  Aligned_cols=157  Identities=15%  Similarity=0.274  Sum_probs=131.0

Q ss_pred             hcceeeeecCCCceEEEEEecCCeEEEecCCCcccee-eEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCC
Q psy4650          34 ETKVDITTNKDMIEYKISYQESSRVKAFNPIQVATLI-LKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNK  112 (381)
Q Consensus        34 ~~~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~-~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~  112 (381)
                      -.-|.+.+++-....+++|..-+.|++|.+.+..-.. ...+.+|+..|..++|||..+ ..|+|||.||+|+|||++.+
T Consensus       212 ~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~-~vfaScS~DgsIrIWDiRs~  290 (440)
T KOG0302|consen  212 GEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTED-GVFASCSCDGSIRIWDIRSG  290 (440)
T ss_pred             ccceeeecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccC-ceEEeeecCceEEEEEecCC
Confidence            4457777777555568888889999999986532221 234568999999999999876 49999999999999999988


Q ss_pred             ---eEEEEeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCC---CCeeeEEEecCCcceEEEEEcCC-CCEEEEEeCC
Q psy4650         113 ---TCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSG---THRLEISLTYGLERVWTISSLKG-SNNVAIGYDE  185 (381)
Q Consensus       113 ---~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~---~~~~~~~~~~~~~~v~~v~~~~~-~~~l~~~~~d  185 (381)
                         .++.+ +.|.+-|+.++|+....+||+|+.||+++|||++   .++++..++.|..+|+++.|+|. ...+++++.|
T Consensus       291 ~~~~~~~~-kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D  369 (440)
T KOG0302|consen  291 PKKAAVST-KAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGED  369 (440)
T ss_pred             CccceeEe-eccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCC
Confidence               33443 8899999999999988899999999999999998   46788999999999999999996 4678888899


Q ss_pred             CeEEEEe
Q psy4650         186 GSVLLKV  192 (381)
Q Consensus       186 g~v~i~~  192 (381)
                      ..+.+|+
T Consensus       370 ~QitiWD  376 (440)
T KOG0302|consen  370 NQITIWD  376 (440)
T ss_pred             CcEEEEE
Confidence            9999944

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.82  E-value=3.2e-18  Score=149.80  Aligned_cols=196  Identities=23%  Similarity=0.331  Sum_probs=160.9

Q ss_pred             eeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEE
Q psy4650          37 VDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQ  116 (381)
Q Consensus        37 ~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~  116 (381)
                      ..+...++ +.++++++.+|.+++|+...  ......+.+|...+.++.|+|++.  .+++++.|+.+++|++.+++...
T Consensus        13 ~~~~~~~~-~~~l~~~~~~g~i~i~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~--~l~~~~~~~~i~i~~~~~~~~~~   87 (289)
T cd00200          13 TCVAFSPD-GKLLATGSGDGTIKVWDLET--GELLRTLKGHTGPVRDVAASADGT--YLASGSSDKTIRLWDLETGECVR   87 (289)
T ss_pred             EEEEEcCC-CCEEEEeecCcEEEEEEeeC--CCcEEEEecCCcceeEEEECCCCC--EEEEEcCCCeEEEEEcCcccceE
Confidence            45556665 56889999999999999864  335667889999999999999875  79999999999999999888888


Q ss_pred             EeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCC
Q psy4650         117 TLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKVGREE  196 (381)
Q Consensus       117 ~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~~~~~  196 (381)
                      .+..|...+.++.|+|++..+++++.|+.+.+||+.+++....+..|...+.++.|+|++.++++++.+|.+.+      
T Consensus        88 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i------  161 (289)
T cd00200          88 TLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKL------  161 (289)
T ss_pred             EEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEE------
Confidence            88899989999999999888888888999999999999988888888889999999999999998888999999      


Q ss_pred             ceEEEecCCCEEEEEecCceeecccccCCccccccCCceEEeeehHHHHHhccCCCc
Q psy4650         197 PAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSVHVTIKYRLDISD  253 (381)
Q Consensus       197 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~d~~~~~~d~~~  253 (381)
                          ||..++.++.....+.  ..+    ..+.++|++..++++..++....|++..
T Consensus       162 ----~d~~~~~~~~~~~~~~--~~i----~~~~~~~~~~~l~~~~~~~~i~i~d~~~  208 (289)
T cd00200         162 ----WDLRTGKCVATLTGHT--GEV----NSVAFSPDGEKLLSSSSDGTIKLWDLST  208 (289)
T ss_pred             ----EEccccccceeEecCc--ccc----ceEEECCCcCEEEEecCCCcEEEEECCC
Confidence                6665555444333111  011    1156788998888888888888898865

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.82  E-value=2.6e-18  Score=150.41  Aligned_cols=194  Identities=21%  Similarity=0.314  Sum_probs=157.9

Q ss_pred             ceeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEE
Q psy4650          36 KVDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCV  115 (381)
Q Consensus        36 ~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~  115 (381)
                      ...+...++ ..++++++.++.+++|++..  ......+.+|.+.+.++.|+|++.  ++++++.|+.+++||+.+++..
T Consensus        96 i~~~~~~~~-~~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~--~l~~~~~~~~i~i~d~~~~~~~  170 (289)
T cd00200          96 VSSVAFSPD-GRILSSSSRDKTIKVWDVET--GKCLTTLRGHTDWVNSVAFSPDGT--FVASSSQDGTIKLWDLRTGKCV  170 (289)
T ss_pred             EEEEEEcCC-CCEEEEecCCCeEEEEECCC--cEEEEEeccCCCcEEEEEEcCcCC--EEEEEcCCCcEEEEEccccccc
Confidence            344555555 56888888899999999963  455677778999999999999754  7888888999999999988888


Q ss_pred             EEeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCC
Q psy4650         116 QTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKVGRE  195 (381)
Q Consensus       116 ~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~~~~  195 (381)
                      ..+..|...+.++.|+|++..+++++.|+.+++||+.+++....+..+...+.++.|+|++.++++++.+|.+.+     
T Consensus       171 ~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i-----  245 (289)
T cd00200         171 ATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRV-----  245 (289)
T ss_pred             eeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEE-----
Confidence            888899889999999999999999999999999999999888888788889999999999888888888999999     


Q ss_pred             CceEEEecCCCEEEEEecCceeecccccCCccccccCCceEEeeehHHHHHhccC
Q psy4650         196 EPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSVHVTIKYRLD  250 (381)
Q Consensus       196 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~d~~~~~~d  250 (381)
                           |+..++.+......+.  ..+    ..+.++|++..+++++.++....|+
T Consensus       246 -----~~~~~~~~~~~~~~~~--~~i----~~~~~~~~~~~l~~~~~d~~i~iw~  289 (289)
T cd00200         246 -----WDLRTGECVQTLSGHT--NSV----TSLAWSPDGKRLASGSADGTIRIWD  289 (289)
T ss_pred             -----EEcCCceeEEEccccC--CcE----EEEEECCCCCEEEEecCCCeEEecC
Confidence                 7776666555443211  111    1156788999999998888776664

>KOG0274|consensus

Probab=99.82  E-value=9.4e-19  Score=163.13  Aligned_cols=227  Identities=18%  Similarity=0.237  Sum_probs=176.1

Q ss_pred             eeeeecCCCceEEEEEecCCeEEEecCCCccceeeEe-eccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEE
Q psy4650          37 VDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKT-LYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCV  115 (381)
Q Consensus        37 ~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~-l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~  115 (381)
                      ..+....-...++++++.++++++|+..+  ...+.. +.||.+.|.++.+...+.  ++++|+.|.++++||..+|.+.
T Consensus       209 ~~~~~~q~~~~~~~~~s~~~tl~~~~~~~--~~~i~~~l~GH~g~V~~l~~~~~~~--~lvsgS~D~t~rvWd~~sg~C~  284 (537)
T KOG0274|consen  209 HVVLCLQLHDGFFKSGSDDSTLHLWDLNN--GYLILTRLVGHFGGVWGLAFPSGGD--KLVSGSTDKTERVWDCSTGECT  284 (537)
T ss_pred             chhhhheeecCeEEecCCCceeEEeeccc--ceEEEeeccCCCCCceeEEEecCCC--EEEEEecCCcEEeEecCCCcEE
Confidence            33444333356899999999999999874  444455 999999999999976333  8999999999999999999999


Q ss_pred             EEeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCC
Q psy4650         116 QTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKVGRE  195 (381)
Q Consensus       116 ~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~~~~  195 (381)
                      ..+.+|...|.++...  ...+++|+.|.+|++|++.++..+..+.+|.+.|.++..+  +..+++|+.||.|++     
T Consensus       285 ~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~V-----  355 (537)
T KOG0274|consen  285 HSLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKV-----  355 (537)
T ss_pred             EEecCCCceEEEEEcc--CceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEE-----
Confidence            9999999999998764  4577888999999999999999999999999999999998  789999999999999     


Q ss_pred             CceEEEecCCCEEEEEecCceeecccccCCccccccCCc-eEEeeehHHHHHhccCCCcChhHHHHHHHHHhh-------
Q psy4650         196 EPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAG-VVLTLSVHVTIKYRLDISDSHRSVAKLRAAAET-------  267 (381)
Q Consensus       196 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg-~~l~~~~~d~~~~~~d~~~~~~~~~~l~~~~e~-------  267 (381)
                           ||..+++++.....+..  .+.+.      .-++ ..+..++.|..+..||+....+.+..+..+.+.       
T Consensus       356 -----W~~~~~~cl~sl~gH~~--~V~sl------~~~~~~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~~  422 (537)
T KOG0274|consen  356 -----WDPRTGKCLKSLSGHTG--RVYSL------IVDSENRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLLR  422 (537)
T ss_pred             -----EEhhhceeeeeecCCcc--eEEEE------EecCcceEEeeeeccceEeecCCchhhhhhhhcCCcccccccccc
Confidence                 88888888777655322  22222      2355 889999999999999997654444444444332       


Q ss_pred             hhhhccccceeeEEEecccCCc
Q psy4650         268 CMHVLSTLQSSNVFVESLYDGL  289 (381)
Q Consensus       268 ak~~lS~~~~~~i~~~~l~~g~  289 (381)
                      -+..+|...+..|.++...++.
T Consensus       423 ~~~Lvs~~aD~~Ik~WD~~~~~  444 (537)
T KOG0274|consen  423 DNFLVSSSADGTIKLWDAEEGE  444 (537)
T ss_pred             cceeEeccccccEEEeecccCc
Confidence            2344466666667776544443

>KOG0282|consensus

Probab=99.82  E-value=1e-20  Score=164.34  Aligned_cols=170  Identities=18%  Similarity=0.292  Sum_probs=143.5

Q ss_pred             ceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCC-CeEEEEeccCCCCEEEEEEecCCCEEEEEeCCCCE
Q psy4650          68 TLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQN-KTCVQTLEGHGQNISAVCFHPELPIVITGSEDGSV  146 (381)
Q Consensus        68 ~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~-~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i  146 (381)
                      ....+++.||+..|+++.|.|... .+|++|+.|+.|+||++-. +.+++++.+|..+|..++|+++|..++++|.|+.+
T Consensus       204 kk~~~~~~gH~kgvsai~~fp~~~-hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~l  282 (503)
T KOG0282|consen  204 KKLSHNLSGHTKGVSAIQWFPKKG-HLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFL  282 (503)
T ss_pred             HhheeeccCCccccchhhhcccee-eEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceee
Confidence            345788999999999999999433 3899999999999999876 78999999999999999999999999999999999


Q ss_pred             EEEeCCCCeeeEEEecCCcceEEEEEcCCC-CEEEEEeCCCeEEEEecCCCceEEEecCCCEEEEEecCceeecccccCC
Q psy4650         147 RVWHSGTHRLEISLTYGLERVWTISSLKGS-NNVAIGYDEGSVLLKVGREEPAVSMDVNGCKIIWARHSEVQQANLKTMP  225 (381)
Q Consensus       147 ~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~~l~~~~~dg~v~i~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~  225 (381)
                      ++||+.+|+....+.. ...+.|+.|+|++ +.+++|+.|+.|+.          ||.+++..+.....     .+.+..
T Consensus       283 KlwDtETG~~~~~f~~-~~~~~cvkf~pd~~n~fl~G~sd~ki~~----------wDiRs~kvvqeYd~-----hLg~i~  346 (503)
T KOG0282|consen  283 KLWDTETGQVLSRFHL-DKVPTCVKFHPDNQNIFLVGGSDKKIRQ----------WDIRSGKVVQEYDR-----HLGAIL  346 (503)
T ss_pred             eeeccccceEEEEEec-CCCceeeecCCCCCcEEEEecCCCcEEE----------EeccchHHHHHHHh-----hhhhee
Confidence            9999999999998873 4678999999998 78999999999998          77777764433322     222222


Q ss_pred             ccccccCCceEEeeehHHHHHhccCCCcCh
Q psy4650         226 EVFENITAGVVLTLSVHVTIKYRLDISDSH  255 (381)
Q Consensus       226 ~~~~~~~dg~~l~~~~~d~~~~~~d~~~~~  255 (381)
                      . +.|.++|+..++.+++....+|+.....
T Consensus       347 ~-i~F~~~g~rFissSDdks~riWe~~~~v  375 (503)
T KOG0282|consen  347 D-ITFVDEGRRFISSSDDKSVRIWENRIPV  375 (503)
T ss_pred             e-eEEccCCceEeeeccCccEEEEEcCCCc
Confidence            2 5788999999999999999999876543

>KOG0269|consensus

Probab=99.82  E-value=4.6e-20  Score=168.67  Aligned_cols=154  Identities=20%  Similarity=0.257  Sum_probs=133.2

Q ss_pred             eeeecCCCceEEEEEecCCeEEEecCCCcc-ceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEE
Q psy4650          38 DITTNKDMIEYKISYQESSRVKAFNPIQVA-TLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQ  116 (381)
Q Consensus        38 ~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~-~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~  116 (381)
                      +|..++.-.+++++++..|.|-+||+.... ...+..+..|+..++++.|++..- .+|+|||.||+|++||++......
T Consensus        92 DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep-~iliSGSQDg~vK~~DlR~~~S~~  170 (839)
T KOG0269|consen   92 DVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEP-NILISGSQDGTVKCWDLRSKKSKS  170 (839)
T ss_pred             hcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCc-cEEEecCCCceEEEEeeecccccc
Confidence            445555557899999999999999996522 334557889999999999998644 489999999999999999998888


Q ss_pred             EeccCCCCEEEEEEec-CCCEEEEEeCCCCEEEEeCCCC-eeeEEEecCCcceEEEEEcCCCCEEEEEeCCCeEEEEe
Q psy4650         117 TLEGHGQNISAVCFHP-ELPIVITGSEDGSVRVWHSGTH-RLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKV  192 (381)
Q Consensus       117 ~~~~~~~~v~~~~~~p-~~~~l~s~~~d~~i~vwd~~~~-~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~  192 (381)
                      ++.+....|..+.|+| .+..++++...|.+++||++.. ++...+..|.+.|.|+.|+|++.+||+|+.|+.++||.
T Consensus       171 t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd  248 (839)
T KOG0269|consen  171 TFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWD  248 (839)
T ss_pred             cccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEe
Confidence            8988889999999999 4568999999999999999854 45667888999999999999999999999999999966

>KOG0647|consensus

Probab=99.81  E-value=1e-18  Score=143.62  Aligned_cols=214  Identities=14%  Similarity=0.188  Sum_probs=153.1

Q ss_pred             hHHHHhhhcceeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEE
Q psy4650          27 DIETIVRETKVDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKI  106 (381)
Q Consensus        27 ~~~~~~~~~~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~v  106 (381)
                      ++..-+.-...++.++|....++++++-||+||+|++.......-.....|.++|.+++|+.+|+  .+++|+.|+.+++
T Consensus        21 ev~~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~Wsddgs--kVf~g~~Dk~~k~   98 (347)
T KOG0647|consen   21 EVPNPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGS--KVFSGGCDKQAKL   98 (347)
T ss_pred             ecCCCcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCc--eEEeeccCCceEE
Confidence            33333344556777888667788899999999999997532222345668999999999999887  6999999999999


Q ss_pred             EECCCCeEEEEeccCCCCEEEEEEecCCC--EEEEEeCCCCEEEEeCCCCeeeEEEecC---------------------
Q psy4650         107 WDYQNKTCVQTLEGHGQNISAVCFHPELP--IVITGSEDGSVRVWHSGTHRLEISLTYG---------------------  163 (381)
Q Consensus       107 wd~~~~~~~~~~~~~~~~v~~~~~~p~~~--~l~s~~~d~~i~vwd~~~~~~~~~~~~~---------------------  163 (381)
                      ||+.+++ ...+..|.++|.++.|-+...  .|++|++|++|++||.+...++.++...                     
T Consensus        99 wDL~S~Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~  177 (347)
T KOG0647|consen   99 WDLASGQ-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVATAERH  177 (347)
T ss_pred             EEccCCC-eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccCceeEEEecCCc
Confidence            9999995 667778999999999988665  8999999999999999987766544311                     


Q ss_pred             --------------------CcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCceEEEecCCCEEEEEecCcee---ec-
Q psy4650         164 --------------------LERVWTISSLKGSNNVAIGYDEGSVLLKVGREEPAVSMDVNGCKIIWARHSEVQ---QA-  219 (381)
Q Consensus       164 --------------------~~~v~~v~~~~~~~~l~~~~~dg~v~i~~~~~~~~~~~d~~~~~~~~~~~~~~~---~~-  219 (381)
                                          .-.++||+..++....+.|+-+|.+-+-.        .|....+.-+...-+..   .. 
T Consensus       178 i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~--------id~~~~~~nFtFkCHR~~~~~~~  249 (347)
T KOG0647|consen  178 IAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQY--------IDDPNPKDNFTFKCHRSTNSVND  249 (347)
T ss_pred             EEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEe--------cCCCCccCceeEEEeccCCCCCC
Confidence                                11467777777777778888888877733        22210011111111110   11 


Q ss_pred             ccccCCccccccCCceEEeeehHHHHHhccCCC
Q psy4650         220 NLKTMPEVFENITAGVVLTLSVHVTIKYRLDIS  252 (381)
Q Consensus       220 ~~~~~~~~~~~~~dg~~l~~~~~d~~~~~~d~~  252 (381)
                      .+.++.. ++|.|.-..+++++.|++...||-.
T Consensus       250 ~VYaVNs-i~FhP~hgtlvTaGsDGtf~FWDkd  281 (347)
T KOG0647|consen  250 DVYAVNS-IAFHPVHGTLVTAGSDGTFSFWDKD  281 (347)
T ss_pred             ceEEecc-eEeecccceEEEecCCceEEEecch
Confidence            1233333 6788888899999999999999853

>KOG0265|consensus

Probab=99.81  E-value=4.5e-19  Score=145.60  Aligned_cols=182  Identities=16%  Similarity=0.210  Sum_probs=143.3

Q ss_pred             eeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCC-CeEEEEeccCCCCEEEEEEecCCCEEEEEeCCCCEEE
Q psy4650          70 ILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQN-KTCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRV  148 (381)
Q Consensus        70 ~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~-~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~v  148 (381)
                      ++..+.||.+.|..+.|+|+|.  .|+||+.|..|.+|+.-. -+....+++|.+.|..+.|.++++.++++|.|++++.
T Consensus        39 p~m~l~gh~geI~~~~F~P~gs--~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~  116 (338)
T KOG0265|consen   39 PIMLLPGHKGEIYTIKFHPDGS--CFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRG  116 (338)
T ss_pred             hhhhcCCCcceEEEEEECCCCC--eEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEE
Confidence            4556789999999999999877  899999999999999643 3457788999999999999999999999999999999


Q ss_pred             EeCCCCeeeEEEecCCcceEEEEEcCCCC-EEEEEeCCCeEEEEecCC----------------------CceEEEecCC
Q psy4650         149 WHSGTHRLEISLTYGLERVWTISSLKGSN-NVAIGYDEGSVLLKVGRE----------------------EPAVSMDVNG  205 (381)
Q Consensus       149 wd~~~~~~~~~~~~~~~~v~~v~~~~~~~-~l~~~~~dg~v~i~~~~~----------------------~~~~~~d~~~  205 (381)
                      ||+.+|+..+.+++|...|+++.-..-|. .+.++++||++++|+.+.                      ..+++--.++
T Consensus       117 wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn  196 (338)
T KOG0265|consen  117 WDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDN  196 (338)
T ss_pred             EecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecccccceeeccccC
Confidence            99999999999999999999988554454 677889999999988552                      1122222233


Q ss_pred             CEEEEEecCceeecccccCCcc---ccccCCceEEeeehHHHHHhccCCCc
Q psy4650         206 CKIIWARHSEVQQANLKTMPEV---FENITAGVVLTLSVHVTIKYRLDISD  253 (381)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~dg~~l~~~~~d~~~~~~d~~~  253 (381)
                      ...+|+.........+.++...   +..+++|.++.+-+.+..+..||++.
T Consensus       197 ~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp  247 (338)
T KOG0265|consen  197 DIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRP  247 (338)
T ss_pred             ceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecc
Confidence            3455665444444444444332   45678999999999999888898764

>KOG0640|consensus

Probab=99.81  E-value=2.4e-19  Score=147.83  Aligned_cols=152  Identities=18%  Similarity=0.314  Sum_probs=129.4

Q ss_pred             eeeecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEEE
Q psy4650          38 DITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQT  117 (381)
Q Consensus        38 ~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~  117 (381)
                      .+.++|. ..+|++++.|++|++||...........+-....+|.++.|+|.|+  +++.|....++++||+.+-++...
T Consensus       177 ~l~FHPr-e~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGe--fllvgTdHp~~rlYdv~T~Qcfvs  253 (430)
T KOG0640|consen  177 DLDFHPR-ETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGE--FLLVGTDHPTLRLYDVNTYQCFVS  253 (430)
T ss_pred             ceeecch-hheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCc--eEEEecCCCceeEEeccceeEeee
Confidence            4556665 5699999999999999997644443334445678999999999998  899999999999999998876554


Q ss_pred             e---ccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEec--CCcceEEEEEcCCCCEEEEEeCCCeEEEEe
Q psy4650         118 L---EGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTY--GLERVWTISSLKGSNNVAIGYDEGSVLLKV  192 (381)
Q Consensus       118 ~---~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~--~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~  192 (381)
                      -   ..|++.|+++.+++.++.-++++.||.|++||--+++++.++..  ....|.+..|..+|+++.+.+.|..+++|.
T Consensus       254 anPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWE  333 (430)
T KOG0640|consen  254 ANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWE  333 (430)
T ss_pred             cCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeee
Confidence            3   46899999999999999999999999999999999999888753  345789999999999999999999999985

>KOG0296|consensus

Probab=99.81  E-value=1.7e-18  Score=145.79  Aligned_cols=168  Identities=17%  Similarity=0.189  Sum_probs=142.6

Q ss_pred             eeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEEEeccCCCCEEEEEEecCCCEEEEEeCCCCEEE
Q psy4650          69 LILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRV  148 (381)
Q Consensus        69 ~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~v  148 (381)
                      ..+.++..|++.|.+++.+|+.  ++++||+.|....+|++.++.....+.+|...|+++.|+.+|.+||+|+.+|.|+|
T Consensus        55 dS~~tF~~H~~svFavsl~P~~--~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v  132 (399)
T KOG0296|consen   55 DSLVTFDKHTDSVFAVSLHPNN--NLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLV  132 (399)
T ss_pred             cceeehhhcCCceEEEEeCCCC--ceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEE
Confidence            3467889999999999999944  49999999999999999999999999999999999999999999999999999999


Q ss_pred             EeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCceEEEecCCCEEEEEecCceeecccccCCccc
Q psy4650         149 WHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKVGREEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVF  228 (381)
Q Consensus       149 wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (381)
                      |+..++.....+...-..+.=+.|||.+..|+.|+.||.+.+          |...++...-.+..+...+..      .
T Consensus       133 ~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWm----------w~ip~~~~~kv~~Gh~~~ct~------G  196 (399)
T KOG0296|consen  133 FKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWM----------WQIPSQALCKVMSGHNSPCTC------G  196 (399)
T ss_pred             EEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEE----------EECCCcceeeEecCCCCCccc------c
Confidence            999999999988877778888999999999999999999998          555443222222222222211      4


Q ss_pred             cccCCceEEeeehHHHHHhccCCCcC
Q psy4650         229 ENITAGVVLTLSVHVTIKYRLDISDS  254 (381)
Q Consensus       229 ~~~~dg~~l~~~~~d~~~~~~d~~~~  254 (381)
                      +|.|||+.+.++..++.+..|++...
T Consensus       197 ~f~pdGKr~~tgy~dgti~~Wn~ktg  222 (399)
T KOG0296|consen  197 EFIPDGKRILTGYDDGTIIVWNPKTG  222 (399)
T ss_pred             cccCCCceEEEEecCceEEEEecCCC
Confidence            67899999999999999999998764

>KOG0283|consensus

Probab=99.81  E-value=1.4e-19  Score=167.33  Aligned_cols=162  Identities=16%  Similarity=0.257  Sum_probs=132.2

Q ss_pred             eEeec-cccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCC--------------------------------------
Q psy4650          71 LKTLY-GHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQN--------------------------------------  111 (381)
Q Consensus        71 ~~~l~-~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~--------------------------------------  111 (381)
                      .+.+. +|.+.|+++.|+++|.  |||+||.|+.|+||.+..                                      
T Consensus       259 ~Qe~~~ah~gaIw~mKFS~DGK--yLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~  336 (712)
T KOG0283|consen  259 VQEISNAHKGAIWAMKFSHDGK--YLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRT  336 (712)
T ss_pred             eeccccccCCcEEEEEeCCCCc--eeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccc
Confidence            34455 8999999999999987  999999999999997643                                      


Q ss_pred             ----------------------CeEEEEeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEecCCcceEE
Q psy4650         112 ----------------------KTCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWT  169 (381)
Q Consensus       112 ----------------------~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~  169 (381)
                                            .++++.|+||.+.|..++|+.+ .+|++++.|++||+|++....++..|. |.+.|+|
T Consensus       337 s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTc  414 (712)
T KOG0283|consen  337 SSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTC  414 (712)
T ss_pred             cccccccCCccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEEe-cCCeeEE
Confidence                                  1234557899999999999965 588999999999999999999999887 8999999


Q ss_pred             EEEcC-CCCEEEEEeCCCeEEEEecCCCceEEEecCCCEEEEEecCceeecccccCCccccccCCceEEeeehHHHHHhc
Q psy4650         170 ISSLK-GSNNVAIGYDEGSVLLKVGREEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSVHVTIKYR  248 (381)
Q Consensus       170 v~~~~-~~~~l~~~~~dg~v~i~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~d~~~~~  248 (381)
                      |+|+| |.+++++|+-||.++||...+..++.|.--...             +.+    +++.|||+..++|.-.+.-+.
T Consensus       415 VaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~l-------------ITA----vcy~PdGk~avIGt~~G~C~f  477 (712)
T KOG0283|consen  415 VAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRDL-------------ITA----VCYSPDGKGAVIGTFNGYCRF  477 (712)
T ss_pred             EEecccCCCcEeecccccceEEeecCcCeeEeehhhhhh-------------hee----EEeccCCceEEEEEeccEEEE
Confidence            99999 578999999999999998888888777541111             111    456788888888887776666


Q ss_pred             cCCCc
Q psy4650         249 LDISD  253 (381)
Q Consensus       249 ~d~~~  253 (381)
                      ++...
T Consensus       478 Y~t~~  482 (712)
T KOG0283|consen  478 YDTEG  482 (712)
T ss_pred             EEccC
Confidence            55543

>KOG0305|consensus

Probab=99.81  E-value=6.1e-19  Score=158.87  Aligned_cols=214  Identities=16%  Similarity=0.141  Sum_probs=169.3

Q ss_pred             hhcceeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeecc-ccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCC
Q psy4650          33 RETKVDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYG-HEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQN  111 (381)
Q Consensus        33 ~~~~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~-h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~  111 (381)
                      ....+.+...++ +.+|+.|-.+|.|.|||..+  .....++.+ |...|-+++|..  .  .+.+|+.|+.|..+|++.
T Consensus       217 ~~~vtSv~ws~~-G~~LavG~~~g~v~iwD~~~--~k~~~~~~~~h~~rvg~laW~~--~--~lssGsr~~~I~~~dvR~  289 (484)
T KOG0305|consen  217 EELVTSVKWSPD-GSHLAVGTSDGTVQIWDVKE--QKKTRTLRGSHASRVGSLAWNS--S--VLSSGSRDGKILNHDVRI  289 (484)
T ss_pred             CCceEEEEECCC-CCEEEEeecCCeEEEEehhh--ccccccccCCcCceeEEEeccC--c--eEEEecCCCcEEEEEEec
Confidence            345556667766 66999999999999999874  445577778 999999999973  3  689999999999999998


Q ss_pred             CeEEEE-eccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEecCCcceEEEEEcCC-CCEEEEEe--CCCe
Q psy4650         112 KTCVQT-LEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKG-SNNVAIGY--DEGS  187 (381)
Q Consensus       112 ~~~~~~-~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~-~~~l~~~~--~dg~  187 (381)
                      .+.... +.+|...|..+.|++++.++|+|+.|+.+.|||.....+...+..|...|.+++|+|- ...||+|+  .|++
T Consensus       290 ~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~  369 (484)
T KOG0305|consen  290 SQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRC  369 (484)
T ss_pred             chhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccE
Confidence            865444 8899999999999999999999999999999999888899999999999999999995 56788765  6999


Q ss_pred             EEEEecCCC------------ceEEEecCCC------------EEEEEecCceeecccccCCcc---ccccCCceEEeee
Q psy4650         188 VLLKVGREE------------PAVSMDVNGC------------KIIWARHSEVQQANLKTMPEV---FENITAGVVLTLS  240 (381)
Q Consensus       188 v~i~~~~~~------------~~~~~d~~~~------------~~~~~~~~~~~~~~~~~~~~~---~~~~~dg~~l~~~  240 (381)
                      +++|+...+            .-+.|.....            ..+|....-.....+.+|..-   ++.+|||..++++
T Consensus       370 i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~  449 (484)
T KOG0305|consen  370 IKFWNTNTGARIDSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTG  449 (484)
T ss_pred             EEEEEcCCCcEecccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEe
Confidence            999874321            1223443332            244555444444455555432   6889999999999


Q ss_pred             hHHHHHhccCCCc
Q psy4650         241 VHVTIKYRLDISD  253 (381)
Q Consensus       241 ~~d~~~~~~d~~~  253 (381)
                      ..|.+...|.+-.
T Consensus       450 a~DETlrfw~~f~  462 (484)
T KOG0305|consen  450 AADETLRFWNLFD  462 (484)
T ss_pred             cccCcEEeccccC
Confidence            9999999988754

>PTZ00009 heat shock 70 kDa protein; Provisional

Probab=99.80  E-value=5e-21  Score=184.96  Aligned_cols=300  Identities=19%  Similarity=0.276  Sum_probs=189.9

Q ss_pred             chhhhHHHhhhhhcccccccCCChhhHHHHhhhcceeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeeccc----
Q psy4650           2 SRLISQAKNTIIKNKRALNTELTETDIETIVRETKVDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGH----   77 (381)
Q Consensus         2 ~~~~~~~~~t~~~~k~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h----   77 (381)
                      +++.+||+||++.+||++|++|+++.++...+.++|.+...+++. ..+....++..+.|.+.+....++..++..    
T Consensus        57 ~~~~~~p~~ti~~~KrliG~~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~peel~a~iL~~lk~~ae~~  135 (653)
T PTZ00009         57 NQVARNPENTVFDAKRLIGRKFDDSVVQSDMKHWPFKVTTGGDDK-PMIEVTYQGEKKTFHPEEISSMVLQKMKEIAEAY  135 (653)
T ss_pred             HhhhhCcccEEhhhHHHhCCCCCchhHhhhhhcCceEEEEcCCCc-eEEEEEeCCceEEECHHHHHHHHHHHHHHHHHHH
Confidence            467889999999999999999999999999999999988766543 333334455567788877666666555431    


Q ss_pred             -cccEEEEEee-e----CCCccEEEEEcCCCeEEEEECCCCeEEEEeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeC
Q psy4650          78 -EKGVNCVDYY-H----GGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHS  151 (381)
Q Consensus        78 -~~~v~~~~~~-~----~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~  151 (381)
                       ...|..+..+ |    +.++..+..+.        ....-..+..+...++...+..+...      ...++.+.++|+
T Consensus       136 ~g~~v~~~VItVPa~f~~~qR~a~~~Aa--------~~AGl~v~~li~EptAAAl~y~~~~~------~~~~~~vlv~D~  201 (653)
T PTZ00009        136 LGKQVKDAVVTVPAYFNDSQRQATKDAG--------TIAGLNVLRIINEPTAAAIAYGLDKK------GDGEKNVLIFDL  201 (653)
T ss_pred             hCCCcceeEEEeCCCCCHHHHHHHHHHH--------HHcCCceeEEecchHHHHHHHhhhcc------CCCCCEEEEEEC
Confidence             1223222211 1    00000000000        00111222333333222111111110      012567999999


Q ss_pred             CCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCceEEEecCCCEEEEEecCceeecccccCCcccccc
Q psy4650         152 GTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKVGREEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENI  231 (381)
Q Consensus       152 ~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (381)
                      ..|+...++-.....+..+        ++++                  +|                ..+++...     
T Consensus       202 GggT~dvsv~~~~~~~~~v--------~a~~------------------gd----------------~~lGG~d~-----  234 (653)
T PTZ00009        202 GGGTFDVSLLTIEDGIFEV--------KATA------------------GD----------------THLGGEDF-----  234 (653)
T ss_pred             CCCeEEEEEEEEeCCeEEE--------EEec------------------CC----------------CCCChHHH-----
Confidence            8887655442111111000        0000                  01                02222221     


Q ss_pred             CCceEEeeehHHHHHh-ccCCCcChhHHHHHHHHHhhhhhhccccceeeEEEecccCCcccccccChHHHHHHHHHHhhh
Q psy4650         232 TAGVVLTLSVHVTIKY-RLDISDSHRSVAKLRAAAETCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIGGLLTS  310 (381)
Q Consensus       232 ~dg~~l~~~~~d~~~~-~~d~~~~~~~~~~l~~~~e~ak~~lS~~~~~~i~~~~l~~g~~~~~~itr~~fe~l~~~l~~~  310 (381)
                      +....-++......++ ..++..+++++.+|+.+||++|+.||...++.+.++++++|.++..++||++||+++.+++.+
T Consensus       235 D~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~aEkaK~~LS~~~~~~i~i~~~~~~~d~~~~itR~~fe~l~~~l~~~  314 (653)
T PTZ00009        235 DNRLVEFCVQDFKRKNRGKDLSSNQRALRRLRTQCERAKRTLSSSTQATIEIDSLFEGIDYNVTISRARFEELCGDYFRN  314 (653)
T ss_pred             HHHHHHHHHHHHHHhccCCCCccCHHHHHHHHHHHHHHHHhCCCCceEEEEEEeccCCceEEEEECHHHHHHHHHHHHHH
Confidence            0000001112222222 356677889999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhHhhhccccceeeEeeccccCcceEEeecHHHHHHHHHHHHH-----HhHHHHHHHH
Q psy4650         311 FVQPCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIGGLLT-----SFVQPIEDVL  366 (381)
Q Consensus       311 ~~~~~~~~Ls~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~-----~~~~~~~~~l  366 (381)
                      +.++++++|..   +.++.++++.++++||++++|.++++++++|+     +.++|-+.+-
T Consensus       315 ~~~~i~~~L~~---a~~~~~~i~~ViLvGGssriP~v~~~i~~~f~~~~~~~~~npdeaVA  372 (653)
T PTZ00009        315 TLQPVEKVLKD---AGMDKRSVHEVVLVGGSTRIPKVQSLIKDFFNGKEPCKSINPDEAVA  372 (653)
T ss_pred             HHHHHHHHHHH---cCCCHHHCcEEEEECCCCCChhHHHHHHHHhCCCCCCCCCCcchHHh
Confidence            99999999987   56667788889999999999999999999995     3456655444

>KOG0289|consensus

Probab=99.80  E-value=1.3e-18  Score=149.38  Aligned_cols=207  Identities=18%  Similarity=0.223  Sum_probs=159.8

Q ss_pred             ChhhHHHHhhhcc---eeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcC
Q psy4650          24 TETDIETIVRETK---VDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGAD  100 (381)
Q Consensus        24 ~~~~~~~~~~~~~---~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~  100 (381)
                      ....+....+-+.   ..+.++++ ...+++++.|..|++|.....+  ....+..|.++|+.+..+|.|+  ||++++.
T Consensus       249 ~s~q~l~~~~Gh~kki~~v~~~~~-~~~v~~aSad~~i~vws~~~~s--~~~~~~~h~~~V~~ls~h~tge--YllsAs~  323 (506)
T KOG0289|consen  249 PSNQILATLKGHTKKITSVKFHKD-LDTVITASADEIIRVWSVPLSS--EPTSSRPHEEPVTGLSLHPTGE--YLLSASN  323 (506)
T ss_pred             chhhhhhhccCcceEEEEEEeccc-hhheeecCCcceEEeecccccc--CccccccccccceeeeeccCCc--EEEEecC
Confidence            3344444444333   34555665 4467888999999999975422  4456778999999999999888  9999999


Q ss_pred             CCeEEEEECCCCeEEEEeccC--CCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCE
Q psy4650         101 DRLVKIWDYQNKTCVQTLEGH--GQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNN  178 (381)
Q Consensus       101 d~~v~vwd~~~~~~~~~~~~~--~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~  178 (381)
                      |++..+.|++++..+......  .-.+++.+|||||-.+.+|..|+.++|||+..+..+..|.+|.++|..++|+.+|.+
T Consensus       324 d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~  403 (506)
T KOG0289|consen  324 DGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYW  403 (506)
T ss_pred             CceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceE
Confidence            999999999999877766532  235899999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCCeEEEEecCCCceEEEecCCCEEEEEecCceeecccccCCccccccCCceEEeeehHHHHHhccC
Q psy4650         179 VAIGYDEGSVLLKVGREEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSVHVTIKYRLD  250 (381)
Q Consensus       179 l~~~~~dg~v~i~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~d~~~~~~d  250 (381)
                      |+++++|+.|++          ||.+.-+-+-.+..+    ....... +.|.+.|.+|..++.+-.+|..+
T Consensus       404 Lat~add~~V~l----------wDLRKl~n~kt~~l~----~~~~v~s-~~fD~SGt~L~~~g~~l~Vy~~~  460 (506)
T KOG0289|consen  404 LATAADDGSVKL----------WDLRKLKNFKTIQLD----EKKEVNS-LSFDQSGTYLGIAGSDLQVYICK  460 (506)
T ss_pred             EEEEecCCeEEE----------EEehhhcccceeecc----cccccee-EEEcCCCCeEEeecceeEEEEEe
Confidence            999999999999          777554422222111    1111111 45678899999998877666654

>KOG0316|consensus

Probab=99.80  E-value=4.6e-19  Score=140.82  Aligned_cols=126  Identities=25%  Similarity=0.354  Sum_probs=118.8

Q ss_pred             cceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEEEeccCCCCEEEEEEecCCCEEEEEeCCCCE
Q psy4650          67 ATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPIVITGSEDGSV  146 (381)
Q Consensus        67 ~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i  146 (381)
                      +...++.+.+|.++|..+.|+-+|+  |.++|+.|++|++|+...+.++.++.+|...|..++.+.+...+++||.|+.+
T Consensus         6 ptkr~~~l~~~qgaV~avryN~dGn--Y~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v   83 (307)
T KOG0316|consen    6 PTKRLSILDCAQGAVRAVRYNVDGN--YCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAV   83 (307)
T ss_pred             cchhceeecccccceEEEEEccCCC--EEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceE
Confidence            3445778899999999999998877  89999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCCCeEEEEecC
Q psy4650         147 RVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKVGR  194 (381)
Q Consensus       147 ~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~~~  194 (381)
                      .+||+.+|+.++.+.+|.+.|+.+.|+.....+++|+.|..+++|+.+
T Consensus        84 ~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCR  131 (307)
T KOG0316|consen   84 QVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCR  131 (307)
T ss_pred             EEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcc
Confidence            999999999999999999999999999999999999999999997644

>KOG1446|consensus

Probab=99.80  E-value=1.1e-17  Score=138.60  Aligned_cols=210  Identities=12%  Similarity=0.108  Sum_probs=150.2

Q ss_pred             cceeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcC--CCeEEEEECCCC
Q psy4650          35 TKVDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGAD--DRLVKIWDYQNK  112 (381)
Q Consensus        35 ~~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~--d~~v~vwd~~~~  112 (381)
                      ....+.++.+ +.++++++.|.++++||..  ....++++..+.-.+..++|.....  .+..++.  |.+||..++.+.
T Consensus        16 ~i~sl~fs~~-G~~litss~dDsl~LYd~~--~g~~~~ti~skkyG~~~~~Fth~~~--~~i~sStk~d~tIryLsl~dN   90 (311)
T KOG1446|consen   16 KINSLDFSDD-GLLLITSSEDDSLRLYDSL--SGKQVKTINSKKYGVDLACFTHHSN--TVIHSSTKEDDTIRYLSLHDN   90 (311)
T ss_pred             ceeEEEecCC-CCEEEEecCCCeEEEEEcC--CCceeeEeecccccccEEEEecCCc--eEEEccCCCCCceEEEEeecC
Confidence            3445556655 6688889999999999986  4566788888888899999876555  3555554  999999999999


Q ss_pred             eEEEEeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCCCeEEEEe
Q psy4650         113 TCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKV  192 (381)
Q Consensus       113 ~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~  192 (381)
                      +.++.|.||...|..++.+|-+..+++++.|++|++||++..++...+....  -..++|.|.|-++|++...+.|++++
T Consensus        91 kylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~--~pi~AfDp~GLifA~~~~~~~IkLyD  168 (311)
T KOG1446|consen   91 KYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSG--RPIAAFDPEGLIFALANGSELIKLYD  168 (311)
T ss_pred             ceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCC--CcceeECCCCcEEEEecCCCeEEEEE
Confidence            9999999999999999999999999999999999999999666544443221  12345566666555555555555533


Q ss_pred             cC-------------------------------------CCceEEEecCCCEEEEEecCceeecccccCCccccccCCce
Q psy4650         193 GR-------------------------------------EEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGV  235 (381)
Q Consensus       193 ~~-------------------------------------~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~  235 (381)
                      -+                                     ...+...|.-+|.+......+.....+.   ....|+|||+
T Consensus       169 ~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~---~~a~ftPds~  245 (311)
T KOG1446|consen  169 LRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLP---LSATFTPDSK  245 (311)
T ss_pred             ecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcc---eeEEECCCCc
Confidence            11                                     0111225555565554444433322222   2246889999


Q ss_pred             EEeeehHHHHHhccCCCcC
Q psy4650         236 VLTLSVHVTIKYRLDISDS  254 (381)
Q Consensus       236 ~l~~~~~d~~~~~~d~~~~  254 (381)
                      ++..++.|++.++|++...
T Consensus       246 Fvl~gs~dg~i~vw~~~tg  264 (311)
T KOG1446|consen  246 FVLSGSDDGTIHVWNLETG  264 (311)
T ss_pred             EEEEecCCCcEEEEEcCCC
Confidence            9999999999999998554

>KOG0300|consensus

Probab=99.80  E-value=9.2e-20  Score=150.76  Aligned_cols=208  Identities=14%  Similarity=0.136  Sum_probs=162.8

Q ss_pred             eeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECC------
Q psy4650          37 VDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQ------  110 (381)
Q Consensus        37 ~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~------  110 (381)
                      +.+..... ..++.+++.|.+.++|.++  ...++.++.||.+.|+|+.|++.+.  ++++++.|++..||...      
T Consensus       152 W~Vaa~~t-qpi~gtASADhTA~iWs~E--sg~CL~~Y~GH~GSVNsikfh~s~~--L~lTaSGD~taHIW~~av~~~vP  226 (481)
T KOG0300|consen  152 WHVAADST-QPICGTASADHTARIWSLE--SGACLATYTGHTGSVNSIKFHNSGL--LLLTASGDETAHIWKAAVNWEVP  226 (481)
T ss_pred             eeehhhcC-CcceeecccccceeEEeec--cccceeeecccccceeeEEeccccc--eEEEccCCcchHHHHHhhcCcCC
Confidence            44444443 3388999999999999998  5788999999999999999999776  89999999999999731      


Q ss_pred             C----------------------------------CeEEEEeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCee
Q psy4650         111 N----------------------------------KTCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRL  156 (381)
Q Consensus       111 ~----------------------------------~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~  156 (381)
                      .                                  ..++..+.+|.+.|.+..|-..|..++++++|++-.+||+.+|..
T Consensus       227 ~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~  306 (481)
T KOG0300|consen  227 SNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEV  306 (481)
T ss_pred             CCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCce
Confidence            1                                  124567889999999999999999999999999999999999999


Q ss_pred             eEEEecCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCceEEEecCCCEEEEEecCceeecccccCCccccccCCceE
Q psy4650         157 EISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKVGREEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGVV  236 (381)
Q Consensus       157 ~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~  236 (381)
                      +..+.+|....+.++-+|..+++++.+.|.++++|+          .+....-..+.. .+...+.+.    .| .-+..
T Consensus       307 v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWD----------FReaI~sV~VFQ-GHtdtVTS~----vF-~~dd~  370 (481)
T KOG0300|consen  307 VNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWD----------FREAIQSVAVFQ-GHTDTVTSV----VF-NTDDR  370 (481)
T ss_pred             eccccCcchhccccccCCcceEEEEeccCceeEecc----------chhhcceeeeec-ccccceeEE----EE-ecCCc
Confidence            999999999999999999999999999999999954          432211111100 011111111    12 34567


Q ss_pred             EeeehHHHHHhccCCCcChhHHHHHHHHH
Q psy4650         237 LTLSVHVTIKYRLDISDSHRSVAKLRAAA  265 (381)
Q Consensus       237 l~~~~~d~~~~~~d~~~~~~~~~~l~~~~  265 (381)
                      ++++++|.++..||++.-..+++.++...
T Consensus       371 vVSgSDDrTvKvWdLrNMRsplATIRtdS  399 (481)
T KOG0300|consen  371 VVSGSDDRTVKVWDLRNMRSPLATIRTDS  399 (481)
T ss_pred             eeecCCCceEEEeeeccccCcceeeecCC
Confidence            78899999999999987666666665543

>KOG0313|consensus

Probab=99.80  E-value=2e-18  Score=146.01  Aligned_cols=189  Identities=12%  Similarity=0.163  Sum_probs=155.0

Q ss_pred             ceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeee-CCCccEEEEEcCCCeEEEEECCCCeE----EEEecc
Q psy4650          46 IEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYH-GGDKPYLISGADDRLVKIWDYQNKTC----VQTLEG  120 (381)
Q Consensus        46 ~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~-~~~~~~l~s~~~d~~v~vwd~~~~~~----~~~~~~  120 (381)
                      ...+++|++||.+++|+.   ++....++.||.++|.+++|.. +.....|+++|.|.++++|..+.+..    +...+|
T Consensus       115 ~~~IltgsYDg~~riWd~---~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~G  191 (423)
T KOG0313|consen  115 SKWILTGSYDGTSRIWDL---KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRG  191 (423)
T ss_pred             CceEEEeecCCeeEEEec---CCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcc
Confidence            679999999999999998   4677788999999999888764 33344699999999999999887742    344469


Q ss_pred             CCCCEEEEEEecCCCEEEEEeCCCCEEEEeCC-------------------------CCeeeEEEecCCcceEEEEEcCC
Q psy4650         121 HGQNISAVCFHPELPIVITGSEDGSVRVWHSG-------------------------THRLEISLTYGLERVWTISSLKG  175 (381)
Q Consensus       121 ~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~-------------------------~~~~~~~~~~~~~~v~~v~~~~~  175 (381)
                      |...|.+++..++|..+++|+.|.++.+|+..                         ++.++.++.+|.+.|.+|.|++ 
T Consensus       192 Hk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-  270 (423)
T KOG0313|consen  192 HKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-  270 (423)
T ss_pred             cccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-
Confidence            99999999999999999999999999999922                         2345678889999999999998 


Q ss_pred             CCEEEEEeCCCeEEEEecCCCceEEEecCCCEEEEEecCceeecccccCCccccccCCceEEeeehHHHHHhccCCCcCh
Q psy4650         176 SNNVAIGYDEGSVLLKVGREEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSVHVTIKYRLDISDSH  255 (381)
Q Consensus       176 ~~~l~~~~~dg~v~i~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~d~~~~~~d~~~~~  255 (381)
                      ...+.+++.|.+|+.          ||..++...-.+....   .+..    .+..|....+++++.+.-...||++.+.
T Consensus       271 ~~v~yS~SwDHTIk~----------WDletg~~~~~~~~~k---sl~~----i~~~~~~~Ll~~gssdr~irl~DPR~~~  333 (423)
T KOG0313|consen  271 ATVIYSVSWDHTIKV----------WDLETGGLKSTLTTNK---SLNC----ISYSPLSKLLASGSSDRHIRLWDPRTGD  333 (423)
T ss_pred             CCceEeecccceEEE----------EEeecccceeeeecCc---ceeE----eecccccceeeecCCCCceeecCCCCCC
Confidence            678899999999999          8888777665554332   2222    2346788999999999999999998654

>KOG0278|consensus

Probab=99.80  E-value=5.4e-19  Score=141.63  Aligned_cols=214  Identities=17%  Similarity=0.191  Sum_probs=167.4

Q ss_pred             cccCCChhhHHHHhhhcceeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEE
Q psy4650          19 LNTELTETDIETIVRETKVDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISG   98 (381)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~   98 (381)
                      +..-.+-.++..+...+.++.+......+++++|+.+..+++||+.... .....+.+|.+.|..+-|.....  .++|+
T Consensus        85 vw~a~tgdelhsf~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~-App~E~~ghtg~Ir~v~wc~eD~--~iLSS  161 (334)
T KOG0278|consen   85 VWDAVTGDELHSFEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPK-APPKEISGHTGGIRTVLWCHEDK--CILSS  161 (334)
T ss_pred             hhhhhhhhhhhhhhhhheeeeEEecccchhhhccchHHHhhhhhccCCC-CCchhhcCCCCcceeEEEeccCc--eEEee
Confidence            3334445566666666666554444447899999999999999997643 44567889999999999987544  68888


Q ss_pred             cCCCeEEEEECCCCeEEEEeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCE
Q psy4650          99 ADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNN  178 (381)
Q Consensus        99 ~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~  178 (381)
                      +.|++||+||.+++..++.+. ...+|.++.++++|.++.++ ..+.|.+||..+-..+..+. ....|.+...+|+...
T Consensus       162 add~tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~dG~ilTia-~gssV~Fwdaksf~~lKs~k-~P~nV~SASL~P~k~~  238 (334)
T KOG0278|consen  162 ADDKTVRLWDHRTGTEVQSLE-FNSPVTSLEVSQDGRILTIA-YGSSVKFWDAKSFGLLKSYK-MPCNVESASLHPKKEF  238 (334)
T ss_pred             ccCCceEEEEeccCcEEEEEe-cCCCCcceeeccCCCEEEEe-cCceeEEeccccccceeecc-CccccccccccCCCce
Confidence            999999999999999988887 45689999999999977665 45689999999988888776 3467889999999999


Q ss_pred             EEEEeCCCeEEEEecCCCceEEEecCCCEEEEEecCceeecccccCCccccccCCceEEeeehHHHHHhccCCCc
Q psy4650         179 VAIGYDEGSVLLKVGREEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSVHVTIKYRLDISD  253 (381)
Q Consensus       179 l~~~~~dg~v~i~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~d~~~~~~d~~~  253 (381)
                      +++|+.|+.++.          ||..+|..+-....    .....+.. +.|+|||...+++++|+++.+|....
T Consensus       239 fVaGged~~~~k----------fDy~TgeEi~~~nk----gh~gpVhc-VrFSPdGE~yAsGSEDGTirlWQt~~  298 (334)
T KOG0278|consen  239 FVAGGEDFKVYK----------FDYNTGEEIGSYNK----GHFGPVHC-VRFSPDGELYASGSEDGTIRLWQTTP  298 (334)
T ss_pred             EEecCcceEEEE----------EeccCCceeeeccc----CCCCceEE-EEECCCCceeeccCCCceEEEEEecC
Confidence            999999999988          88888876544211    11122222 57899999999999999999998654

>KOG0264|consensus

Probab=99.79  E-value=9.7e-19  Score=151.15  Aligned_cols=199  Identities=19%  Similarity=0.192  Sum_probs=152.7

Q ss_pred             eeeecCCCceEEEEEecCCeEEEecCCCcccee--------eEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEEC
Q psy4650          38 DITTNKDMIEYKISYQESSRVKAFNPIQVATLI--------LKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDY  109 (381)
Q Consensus        38 ~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~--------~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~  109 (381)
                      .+.-.|....++++.+..+.+.|||........        -..|.||.+.-+++.|++.... .+++|+.|++|++||+
T Consensus       129 RaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g-~Lls~~~d~~i~lwdi  207 (422)
T KOG0264|consen  129 RARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEG-TLLSGSDDHTICLWDI  207 (422)
T ss_pred             hhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccce-eEeeccCCCcEEEEec
Confidence            344566678899999999999999986543332        2378999998889999987664 7999999999999999


Q ss_pred             CCC-------eEEEEeccCCCCEEEEEEecCC-CEEEEEeCCCCEEEEeCC--CCeeeEEEecCCcceEEEEEcCC-CCE
Q psy4650         110 QNK-------TCVQTLEGHGQNISAVCFHPEL-PIVITGSEDGSVRVWHSG--THRLEISLTYGLERVWTISSLKG-SNN  178 (381)
Q Consensus       110 ~~~-------~~~~~~~~~~~~v~~~~~~p~~-~~l~s~~~d~~i~vwd~~--~~~~~~~~~~~~~~v~~v~~~~~-~~~  178 (381)
                      ...       .+...+.+|+..|..++|+|.. ..+++++.|+.+.|||.+  +.+......+|...|.|+.|+|- +..
T Consensus       208 ~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~i  287 (422)
T KOG0264|consen  208 NAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFI  287 (422)
T ss_pred             cccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCce
Confidence            754       2456789999999999999955 488999999999999999  55566677889999999999995 568


Q ss_pred             EEEEeCCCeEEEEecCCCceEEEecCCCE-EEEEecCceeecccccCCccccccCCc-eEEeeehHHHHHhccCCCc
Q psy4650         179 VAIGYDEGSVLLKVGREEPAVSMDVNGCK-IIWARHSEVQQANLKTMPEVFENITAG-VVLTLSVHVTIKYRLDISD  253 (381)
Q Consensus       179 l~~~~~dg~v~i~~~~~~~~~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~dg-~~l~~~~~d~~~~~~d~~~  253 (381)
                      ||+|+.|++|.+          ||.+.-. ++..+..+  ...+.    .++|+|+. .+|++.+.|++..+||+..
T Consensus       288 lAT~S~D~tV~L----------wDlRnL~~~lh~~e~H--~dev~----~V~WSPh~etvLASSg~D~rl~vWDls~  348 (422)
T KOG0264|consen  288 LATGSADKTVAL----------WDLRNLNKPLHTFEGH--EDEVF----QVEWSPHNETVLASSGTDRRLNVWDLSR  348 (422)
T ss_pred             EEeccCCCcEEE----------eechhcccCceeccCC--CcceE----EEEeCCCCCceeEecccCCcEEEEeccc
Confidence            899999999999          5554322 11111111  11111    14677764 6777888889999999864

>KOG0973|consensus

Probab=99.79  E-value=2.3e-18  Score=163.35  Aligned_cols=197  Identities=18%  Similarity=0.210  Sum_probs=146.5

Q ss_pred             eeeecCCCceEEEEEecCCeEEEecCCCcc----------------ceeeEeeccccccEEEEEeeeCCCccEEEEEcCC
Q psy4650          38 DITTNKDMIEYKISYQESSRVKAFNPIQVA----------------TLILKTLYGHEKGVNCVDYYHGGDKPYLISGADD  101 (381)
Q Consensus        38 ~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~----------------~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d  101 (381)
                      ++.+.++ +.|+++|++|+.|.+|......                -.....+.+|...|..+.|+|++.  +++++|.|
T Consensus        74 CVR~S~d-G~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~--~lvS~s~D  150 (942)
T KOG0973|consen   74 CVRFSPD-GSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDS--LLVSVSLD  150 (942)
T ss_pred             EEEECCC-CCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCcc--EEEEeccc
Confidence            3445666 7799999999999999876210                124567889999999999999776  99999999


Q ss_pred             CeEEEEECCCCeEEEEeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEE----------------------
Q psy4650         102 RLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEIS----------------------  159 (381)
Q Consensus       102 ~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~----------------------  159 (381)
                      ++|.+|+..+...+..+.+|.+.|-.+.|.|-|+++|+-+.|++|++|+........+                      
T Consensus       151 nsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPD  230 (942)
T KOG0973|consen  151 NSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPD  230 (942)
T ss_pred             ceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCC
Confidence            9999999999999999999999999999999999999999999999998654333332                      


Q ss_pred             ------------------------------EecCCcceEEEEEcCC-----CC------------EEEEEeCCCeEEEEe
Q psy4650         160 ------------------------------LTYGLERVWTISSLKG-----SN------------NVAIGYDEGSVLLKV  192 (381)
Q Consensus       160 ------------------------------~~~~~~~v~~v~~~~~-----~~------------~l~~~~~dg~v~i~~  192 (381)
                                                    +-+|..++.++.|+|.     ..            .+|+|+.|+.+.|  
T Consensus       231 G~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSV--  308 (942)
T KOG0973|consen  231 GHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSV--  308 (942)
T ss_pred             cCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEE--
Confidence                                          2355566666666651     11            4566666666666  


Q ss_pred             cCCCceEEEecCCCEEEEEecCceeecccccCC-ccccccCCceEEeeehHHHHHhccCCCc
Q psy4650         193 GREEPAVSMDVNGCKIIWARHSEVQQANLKTMP-EVFENITAGVVLTLSVHVTIKYRLDISD  253 (381)
Q Consensus       193 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~dg~~l~~~~~d~~~~~~d~~~  253 (381)
                              |.....+++.....      +.... .++.|+|||..|..++.|+.+....+.+
T Consensus       309 --------W~T~~~RPl~vi~~------lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee  356 (942)
T KOG0973|consen  309 --------WNTALPRPLFVIHN------LFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEE  356 (942)
T ss_pred             --------EecCCCCchhhhhh------hhcCceeeeeEcCCCCeEEEEecCCeEEEEEcch
Confidence                    44444444433321      11111 1278899999999999998877766543

>KOG0293|consensus

Probab=99.79  E-value=2.4e-18  Score=146.99  Aligned_cols=222  Identities=16%  Similarity=0.160  Sum_probs=161.7

Q ss_pred             CccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCC---eEEEEeccCCCCEEEEEEecCCCEEEEEe
Q psy4650          65 QVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNK---TCVQTLEGHGQNISAVCFHPELPIVITGS  141 (381)
Q Consensus        65 ~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~---~~~~~~~~~~~~v~~~~~~p~~~~l~s~~  141 (381)
                      +.+....+.+..|++.|+-+.||++|.  +|||++.|.+..+|++...   +...++.+|..+|..+.|+||.+++++|+
T Consensus       211 qip~qt~qil~~htdEVWfl~FS~nGk--yLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg  288 (519)
T KOG0293|consen  211 QIPSQTWQILQDHTDEVWFLQFSHNGK--YLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACG  288 (519)
T ss_pred             cCCchhhhhHhhCCCcEEEEEEcCCCe--eEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecC
Confidence            344555677889999999999999887  8999999999999988654   34778889999999999999999999999


Q ss_pred             CCCCEEEEeCCCCeeeEEEec-CCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCceEEEecCCCEEEEEec-------
Q psy4650         142 EDGSVRVWHSGTHRLEISLTY-GLERVWTISSLKGSNNVAIGYDEGSVLLKVGREEPAVSMDVNGCKIIWARH-------  213 (381)
Q Consensus       142 ~d~~i~vwd~~~~~~~~~~~~-~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~~~~~~~~~~d~~~~~~~~~~~-------  213 (381)
                      .|..+.+||+.+|.....+.. +...+.+++|.|+|..+++|+.|+.+..|+-+++....|.......+|++.       
T Consensus       289 ~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~  368 (519)
T KOG0293|consen  289 FDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYDGKY  368 (519)
T ss_pred             chHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhcccccccceeEEEEEcCCCcE
Confidence            999999999999998877653 467899999999999999999999999988655554444433322233322       


Q ss_pred             -----Cceeec--c---------cccCCc--cccccCCceEEeeehHHHHHhccCCCcChhHHHHHHHHHh---------
Q psy4650         214 -----SEVQQA--N---------LKTMPE--VFENITAGVVLTLSVHVTIKYRLDISDSHRSVAKLRAAAE---------  266 (381)
Q Consensus       214 -----~~~~~~--~---------~~~~~~--~~~~~~dg~~l~~~~~d~~~~~~d~~~~~~~~~~l~~~~e---------  266 (381)
                           .+....  +         +.....  .+..+.||.+..+.-.+...++||+.+ .+.+++...+.-         
T Consensus       369 vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e-~~lv~kY~Ghkq~~fiIrSCF  447 (519)
T KOG0293|consen  369 VLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEE-NKLVRKYFGHKQGHFIIRSCF  447 (519)
T ss_pred             EEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecch-hhHHHHhhcccccceEEEecc
Confidence                 111000  0         000000  156788999998888889999999984 344454433311         


Q ss_pred             ---hhhhhccccceeeEEEecccCCc
Q psy4650         267 ---TCMHVLSTLQSSNVFVESLYDGL  289 (381)
Q Consensus       267 ---~ak~~lS~~~~~~i~~~~l~~g~  289 (381)
                         .-+-++|.++...++++....|.
T Consensus       448 gg~~~~fiaSGSED~kvyIWhr~sgk  473 (519)
T KOG0293|consen  448 GGGNDKFIASGSEDSKVYIWHRISGK  473 (519)
T ss_pred             CCCCcceEEecCCCceEEEEEccCCc
Confidence               11345566666677776555443

>KOG0288|consensus

Probab=99.78  E-value=9.7e-19  Score=149.35  Aligned_cols=194  Identities=19%  Similarity=0.255  Sum_probs=153.9

Q ss_pred             eeecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEEEe
Q psy4650          39 ITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTL  118 (381)
Q Consensus        39 i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~  118 (381)
                      +-...+ +.++++++.|+..++|+..  ..+..++|.||++.|+++.|.....  .+++|+.|.+++.||+....+..++
T Consensus       225 ~d~d~~-~~~~iAas~d~~~r~Wnvd--~~r~~~TLsGHtdkVt~ak~~~~~~--~vVsgs~DRtiK~WDl~k~~C~kt~  299 (459)
T KOG0288|consen  225 IDFDSD-NKHVIAASNDKNLRLWNVD--SLRLRHTLSGHTDKVTAAKFKLSHS--RVVSGSADRTIKLWDLQKAYCSKTV  299 (459)
T ss_pred             eeecCC-CceEEeecCCCceeeeecc--chhhhhhhcccccceeeehhhcccc--ceeeccccchhhhhhhhhhheeccc
Confidence            333444 5578889999999999987  5678899999999999999987655  4999999999999999988777766


Q ss_pred             ccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCce
Q psy4650         119 EGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKVGREEPA  198 (381)
Q Consensus       119 ~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~~~~~~~  198 (381)
                      . ....+..+..+  ...+++|..|+.|++||.+++....+...+ +.|+++..+++|..+.+++.|.++.+        
T Consensus       300 l-~~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~g-g~vtSl~ls~~g~~lLsssRDdtl~v--------  367 (459)
T KOG0288|consen  300 L-PGSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVPLG-GRVTSLDLSMDGLELLSSSRDDTLKV--------  367 (459)
T ss_pred             c-ccccccceEec--ceeeeecccccceEEEeccCCceeeEeecC-cceeeEeeccCCeEEeeecCCCceee--------
Confidence            4 23445555554  557888899999999999999999999877 49999999999999999999999999        


Q ss_pred             EEEecCCCEEEEEecCceeecccccCCccccccCCceEEeeehHHHHHhccCCCc
Q psy4650         199 VSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSVHVTIKYRLDISD  253 (381)
Q Consensus       199 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~d~~~~~~d~~~  253 (381)
                        +|.++.........+.....-. ... ..|+||+.+++.|+.++..++|++..
T Consensus       368 --iDlRt~eI~~~~sA~g~k~asD-wtr-vvfSpd~~YvaAGS~dgsv~iW~v~t  418 (459)
T KOG0288|consen  368 --IDLRTKEIRQTFSAEGFKCASD-WTR-VVFSPDGSYVAAGSADGSVYIWSVFT  418 (459)
T ss_pred             --eecccccEEEEeeccccccccc-cce-eEECCCCceeeeccCCCcEEEEEccC
Confidence              7776655444333322111111 111 57899999999999999999999875

>KOG0289|consensus

Probab=99.78  E-value=3e-18  Score=147.27  Aligned_cols=190  Identities=15%  Similarity=0.175  Sum_probs=158.5

Q ss_pred             ceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEEEeccCCCCE
Q psy4650          46 IEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNI  125 (381)
Q Consensus        46 ~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v  125 (381)
                      ...+++|+.|.++.+||..  ..+.+..++||...|+++.++|+..  .+++++.|..+++|.............|.++|
T Consensus       231 ~~~ilTGG~d~~av~~d~~--s~q~l~~~~Gh~kki~~v~~~~~~~--~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V  306 (506)
T KOG0289|consen  231 SSKILTGGEDKTAVLFDKP--SNQILATLKGHTKKITSVKFHKDLD--TVITASADEIIRVWSVPLSSEPTSSRPHEEPV  306 (506)
T ss_pred             CCcceecCCCCceEEEecc--hhhhhhhccCcceEEEEEEeccchh--heeecCCcceEEeeccccccCccccccccccc
Confidence            3578899999999999975  5678899999999999999999776  79999999999999998877777888999999


Q ss_pred             EEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEec--CCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCceEEEec
Q psy4650         126 SAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTY--GLERVWTISSLKGSNNVAIGYDEGSVLLKVGREEPAVSMDV  203 (381)
Q Consensus       126 ~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~--~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~~~~~~~~~~d~  203 (381)
                      +.+..+|.|.++++++.|++..+.|.++|..+.....  ..-.+++.+|||+|..+++|..||.+++          ||.
T Consensus       307 ~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vki----------wdl  376 (506)
T KOG0289|consen  307 TGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKI----------WDL  376 (506)
T ss_pred             eeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEE----------EEc
Confidence            9999999999999999999999999999988766654  3346899999999999999999999999          665


Q ss_pred             CCCEEEEEecCceeecccccCCccccccCCceEEeeehHHHHHhccCCCcCh
Q psy4650         204 NGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSVHVTIKYRLDISDSH  255 (381)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~d~~~~~~d~~~~~  255 (381)
                      .++.-+.....  +...+..    +.|+.+|.+|+++.+|..+..||++...
T Consensus       377 ks~~~~a~Fpg--ht~~vk~----i~FsENGY~Lat~add~~V~lwDLRKl~  422 (506)
T KOG0289|consen  377 KSQTNVAKFPG--HTGPVKA----ISFSENGYWLATAADDGSVKLWDLRKLK  422 (506)
T ss_pred             CCccccccCCC--CCCceeE----EEeccCceEEEEEecCCeEEEEEehhhc
Confidence            44432211111  1122222    5678899999999999999999998754

>KOG0306|consensus

Probab=99.78  E-value=5.2e-18  Score=154.96  Aligned_cols=198  Identities=19%  Similarity=0.214  Sum_probs=157.5

Q ss_pred             ceeeeecCCCceEEEEEecCCeEEEecCCCccc----e-eeEeec-----cccccEEEEEeeeCCCccEEEEEcCCCeEE
Q psy4650          36 KVDITTNKDMIEYKISYQESSRVKAFNPIQVAT----L-ILKTLY-----GHEKGVNCVDYYHGGDKPYLISGADDRLVK  105 (381)
Q Consensus        36 ~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~----~-~~~~l~-----~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~  105 (381)
                      -..+...++ +..+++|+.|.+|++|+..-...    + ..-.++     .-++.|.|+.+||++.  +|+.+--|.+|+
T Consensus       457 IWsi~~~pD-~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk--~LaVsLLdnTVk  533 (888)
T KOG0306|consen  457 IWSISLSPD-NKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGK--LLAVSLLDNTVK  533 (888)
T ss_pred             eeeeeecCC-CCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCc--EEEEEeccCeEE
Confidence            355666666 56899999999999998632111    1 111111     2357899999999887  899999999999


Q ss_pred             EEECCCCeEEEEeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCC
Q psy4650         106 IWDYQNKTCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDE  185 (381)
Q Consensus       106 vwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d  185 (381)
                      ||-+.+.+....+.||.-||.|+..+|++..+++||.|++|++|.+.-|.+-.++-+|.+.|.+|.|.|....+.+++.|
T Consensus       534 VyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD  613 (888)
T KOG0306|consen  534 VYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKD  613 (888)
T ss_pred             EEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CeEEEEecCC-CceEEEecCCCEEEEEecCceeecccccCCccccccCCceEEeeehHHHHHhccCCCc
Q psy4650         186 GSVLLKVGRE-EPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSVHVTIKYRLDISD  253 (381)
Q Consensus       186 g~v~i~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~d~~~~~~d~~~  253 (381)
                      +.++-|++.. ..+..++.+... +|.                .+-+|+|.++++++.|..+.+|.-..
T Consensus       614 ~kvKqWDg~kFe~iq~L~~H~~e-v~c----------------Lav~~~G~~vvs~shD~sIRlwE~td  665 (888)
T KOG0306|consen  614 GKVKQWDGEKFEEIQKLDGHHSE-VWC----------------LAVSPNGSFVVSSSHDKSIRLWERTD  665 (888)
T ss_pred             ceEEeechhhhhhheeeccchhe-eee----------------eEEcCCCCeEEeccCCceeEeeeccC
Confidence            9999954432 223333332221 222                23458999999999999888886543

>KOG0269|consensus

Probab=99.78  E-value=4.2e-18  Score=156.02  Aligned_cols=159  Identities=16%  Similarity=0.239  Sum_probs=128.4

Q ss_pred             HHhhhcceeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEEC
Q psy4650          30 TIVRETKVDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDY  109 (381)
Q Consensus        30 ~~~~~~~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~  109 (381)
                      ++.++...++.++.-...+|++|+.||+|++||++...  -..++.+..+.|..|.|+|... ..++++...|.+++||+
T Consensus       130 ~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~--S~~t~~~nSESiRDV~fsp~~~-~~F~s~~dsG~lqlWDl  206 (839)
T KOG0269|consen  130 NEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKK--SKSTFRSNSESIRDVKFSPGYG-NKFASIHDSGYLQLWDL  206 (839)
T ss_pred             hhhccceeeeeeccCCccEEEecCCCceEEEEeeeccc--ccccccccchhhhceeeccCCC-ceEEEecCCceEEEeec
Confidence            33445556677777778999999999999999997533  3456778889999999999654 58999999999999999


Q ss_pred             CCC-eEEEEeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeee--EEEecCCcceEEEEEcCCCC-EEEEEe--
Q psy4650         110 QNK-TCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLE--ISLTYGLERVWTISSLKGSN-NVAIGY--  183 (381)
Q Consensus       110 ~~~-~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~--~~~~~~~~~v~~v~~~~~~~-~l~~~~--  183 (381)
                      +.. ++...+..|.++|.|+.|||++.+||+||.|+.|+|||+.+++..  .++. ...+|.+|.|-|... +||+++  
T Consensus       207 Rqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tIn-Tiapv~rVkWRP~~~~hLAtcsmv  285 (839)
T KOG0269|consen  207 RQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTIN-TIAPVGRVKWRPARSYHLATCSMV  285 (839)
T ss_pred             cCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEe-ecceeeeeeeccCccchhhhhhcc
Confidence            865 466778899999999999999999999999999999999876543  3333 346899999999865 566665  


Q ss_pred             CCCeEEEEe
Q psy4650         184 DEGSVLLKV  192 (381)
Q Consensus       184 ~dg~v~i~~  192 (381)
                      .|-.|++|+
T Consensus       286 ~dtsV~VWD  294 (839)
T KOG0269|consen  286 VDTSVHVWD  294 (839)
T ss_pred             ccceEEEEe
Confidence            366777754

>KOG0275|consensus

Probab=99.78  E-value=1.4e-18  Score=144.16  Aligned_cols=150  Identities=21%  Similarity=0.357  Sum_probs=128.0

Q ss_pred             eeeecCCCceEEEEEecCCeEEEecCCCccceeeEeec-cccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEE
Q psy4650          38 DITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLY-GHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQ  116 (381)
Q Consensus        38 ~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~-~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~  116 (381)
                      ++.+..+ .+++++|+.||.|++|.+.  ...+++.+. +|+..|+|+.|+.++.  .+.+++.|.++++.-+++|+++.
T Consensus       268 ci~FSRD-sEMlAsGsqDGkIKvWri~--tG~ClRrFdrAHtkGvt~l~FSrD~S--qiLS~sfD~tvRiHGlKSGK~LK  342 (508)
T KOG0275|consen  268 CISFSRD-SEMLASGSQDGKIKVWRIE--TGQCLRRFDRAHTKGVTCLSFSRDNS--QILSASFDQTVRIHGLKSGKCLK  342 (508)
T ss_pred             EEeeccc-HHHhhccCcCCcEEEEEEe--cchHHHHhhhhhccCeeEEEEccCcc--hhhcccccceEEEeccccchhHH
Confidence            4555555 7899999999999999987  456777765 8999999999999887  69999999999999999999999


Q ss_pred             EeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEec--CCcceEEEEEcCCC-CEEEEEeCCCeEEEEe
Q psy4650         117 TLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTY--GLERVWTISSLKGS-NNVAIGYDEGSVLLKV  192 (381)
Q Consensus       117 ~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~--~~~~v~~v~~~~~~-~~l~~~~~dg~v~i~~  192 (381)
                      .++||+..|+...|.++|..+++++.||+|++|+..++.++.+++.  ....|.++...|.+ ..+++|...+++.+-+
T Consensus       343 EfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn  421 (508)
T KOG0275|consen  343 EFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMN  421 (508)
T ss_pred             HhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEe
Confidence            9999999999999999999999999999999999999998888754  34567777777754 4677777777776633

>KOG0646|consensus

Probab=99.77  E-value=1.5e-17  Score=144.35  Aligned_cols=209  Identities=17%  Similarity=0.214  Sum_probs=159.2

Q ss_pred             HHhhhcceeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEEC
Q psy4650          30 TIVRETKVDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDY  109 (381)
Q Consensus        30 ~~~~~~~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~  109 (381)
                      ...-..+.......+.+.|++.|.-.|.+++|.+.  ....+..+.+|...|+|+.|+-++.  +|+|||.||.|.+|++
T Consensus        77 ~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWels--sG~LL~v~~aHYQ~ITcL~fs~dgs--~iiTgskDg~V~vW~l  152 (476)
T KOG0646|consen   77 YIVLPGPVHALASSNLGYFLLAGTISGNLYLWELS--SGILLNVLSAHYQSITCLKFSDDGS--HIITGSKDGAVLVWLL  152 (476)
T ss_pred             hcccccceeeeecCCCceEEEeecccCcEEEEEec--cccHHHHHHhhccceeEEEEeCCCc--EEEecCCCccEEEEEE
Confidence            33434444333344447788888899999999997  4677788899999999999998877  8999999999999976


Q ss_pred             C---------CCeEEEEeccCCCCEEEEEEecCC--CEEEEEeCCCCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCE
Q psy4650         110 Q---------NKTCVQTLEGHGQNISAVCFHPEL--PIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNN  178 (381)
Q Consensus       110 ~---------~~~~~~~~~~~~~~v~~~~~~p~~--~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~  178 (381)
                      .         +.++++.+..|+-+|+.+...+.|  .+++++|.|.++++||+..|..+.++. ....+.+++.+|.++.
T Consensus       153 ~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~-fp~si~av~lDpae~~  231 (476)
T KOG0646|consen  153 TDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT-FPSSIKAVALDPAERV  231 (476)
T ss_pred             EeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe-cCCcceeEEEcccccE
Confidence            3         246788999999999999887765  489999999999999999999888876 4478899999999999


Q ss_pred             EEEEeCCCeEEEEecCCCc-------eEEEecCCCEEEEEecCceeecccccCCc-----cccccCCceEEeeehHHHHH
Q psy4650         179 VAIGYDEGSVLLKVGREEP-------AVSMDVNGCKIIWARHSEVQQANLKTMPE-----VFENITAGVVLTLSVHVTIK  246 (381)
Q Consensus       179 l~~~~~dg~v~i~~~~~~~-------~~~~d~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~dg~~l~~~~~d~~~  246 (381)
                      +.+|+.+|.+.+..-..-+       ...++....          ....+.++..     -++.+-||..|.+|+.|+.+
T Consensus       232 ~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t----------~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~V  301 (476)
T KOG0646|consen  232 VYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENT----------QINVLVGHENESAITCLAISTDGTLLLSGDEDGKV  301 (476)
T ss_pred             EEecCCcceEEeeehhcCCcccccccccccccccc----------eeeeeccccCCcceeEEEEecCccEEEeeCCCCCE
Confidence            9999999999884311100       111111111          1111222221     05667899999999999999


Q ss_pred             hccCCCc
Q psy4650         247 YRLDISD  253 (381)
Q Consensus       247 ~~~d~~~  253 (381)
                      .+||+..
T Consensus       302 cvWdi~S  308 (476)
T KOG0646|consen  302 CVWDIYS  308 (476)
T ss_pred             EEEecch
Confidence            9999864

>KOG0306|consensus

Probab=99.77  E-value=7.5e-18  Score=153.92  Aligned_cols=158  Identities=20%  Similarity=0.317  Sum_probs=143.1

Q ss_pred             eeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEE
Q psy4650          37 VDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQ  116 (381)
Q Consensus        37 ~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~  116 (381)
                      -++..+|+ +.|++.+--|.++++|-+.+  -...-+|.||.-||.|+..+|++.  +++|||.|++|++|-+.=|.|-.
T Consensus       512 L~v~~Spd-gk~LaVsLLdnTVkVyflDt--lKFflsLYGHkLPV~smDIS~DSk--livTgSADKnVKiWGLdFGDCHK  586 (888)
T KOG0306|consen  512 LCVSVSPD-GKLLAVSLLDNTVKVYFLDT--LKFFLSLYGHKLPVLSMDISPDSK--LIVTGSADKNVKIWGLDFGDCHK  586 (888)
T ss_pred             EEEEEcCC-CcEEEEEeccCeEEEEEecc--eeeeeeecccccceeEEeccCCcC--eEEeccCCCceEEeccccchhhh
Confidence            34555666 67999999999999998863  455678999999999999999887  89999999999999999999999


Q ss_pred             EeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCC
Q psy4650         117 TLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKVGREE  196 (381)
Q Consensus       117 ~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~~~~~  196 (381)
                      .+.+|.+.|.++.|-|....+.+||.|+.++-||-..-..++.+.+|...|+|++..|+|.++++++.|..+++|...++
T Consensus       587 S~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~tde  666 (888)
T KOG0306|consen  587 SFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTDE  666 (888)
T ss_pred             hhhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeeeccCc
Confidence            99999999999999998889999999999999999999999999999999999999999999999999999999766555


Q ss_pred             ceE
Q psy4650         197 PAV  199 (381)
Q Consensus       197 ~~~  199 (381)
                      .++
T Consensus       667 ~~~  669 (888)
T KOG0306|consen  667 ILI  669 (888)
T ss_pred             cee
Confidence            554

>KOG0267|consensus

Probab=99.77  E-value=2.5e-19  Score=162.74  Aligned_cols=188  Identities=20%  Similarity=0.264  Sum_probs=157.8

Q ss_pred             CceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEEEeccCCCC
Q psy4650          45 MIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQN  124 (381)
Q Consensus        45 ~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~  124 (381)
                      ....+++|+.+..+-+|....  ...+..|.+|..+|.|+.|+++..  +|+.|+.+|+|++||+..++.++++.||...
T Consensus        39 s~r~~~~Gg~~~k~~L~~i~k--p~~i~S~~~hespIeSl~f~~~E~--LlaagsasgtiK~wDleeAk~vrtLtgh~~~  114 (825)
T KOG0267|consen   39 SSRSLVTGGEDEKVNLWAIGK--PNAITSLTGHESPIESLTFDTSER--LLAAGSASGTIKVWDLEEAKIVRTLTGHLLN  114 (825)
T ss_pred             cceeeccCCCceeeccccccC--CchhheeeccCCcceeeecCcchh--hhcccccCCceeeeehhhhhhhhhhhccccC
Confidence            357899999999999999864  344556899999999999998654  8999999999999999999999999999999


Q ss_pred             EEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCceEEEecC
Q psy4650         125 ISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKVGREEPAVSMDVN  204 (381)
Q Consensus       125 v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~~~~~~~~~~d~~  204 (381)
                      +..+.|+|.+.+.++|+.|..+++||.+...+.+.+.+|...|..+.|+|+|++++.|++|..+++          ||..
T Consensus       115 ~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki----------~d~~  184 (825)
T KOG0267|consen  115 ITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKI----------WDLT  184 (825)
T ss_pred             cceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeee----------eccc
Confidence            999999999999999999999999999988899999999999999999999999999999999999          7776


Q ss_pred             CCEEEEEecCceeecccccCCccccccCCceEEeeehHHHHHhccCCC
Q psy4650         205 GCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSVHVTIKYRLDIS  252 (381)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~d~~~~~~d~~  252 (381)
                      .|+..-....+....    +.  ++|.|..-.+..++.+..+..||++
T Consensus       185 agk~~~ef~~~e~~v----~s--le~hp~e~Lla~Gs~d~tv~f~dle  226 (825)
T KOG0267|consen  185 AGKLSKEFKSHEGKV----QS--LEFHPLEVLLAPGSSDRTVRFWDLE  226 (825)
T ss_pred             ccccccccccccccc----cc--cccCchhhhhccCCCCceeeeeccc
Confidence            666554443221111    11  2345666777788888888888876

>KOG0301|consensus

Probab=99.77  E-value=7.1e-18  Score=152.77  Aligned_cols=136  Identities=19%  Similarity=0.274  Sum_probs=122.7

Q ss_pred             EEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEEEeccCCCCEEE
Q psy4650          48 YKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISA  127 (381)
Q Consensus        48 ~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~  127 (381)
                      .+++||-|.++++|.+.    .+...++||+..|+++..-|.+   .++|||.|++|++|.-  ++.+++|.+|++-|..
T Consensus       114 ~~iSgSWD~TakvW~~~----~l~~~l~gH~asVWAv~~l~e~---~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRg  184 (745)
T KOG0301|consen  114 TLISGSWDSTAKVWRIG----ELVYSLQGHTASVWAVASLPEN---TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRG  184 (745)
T ss_pred             ceEecccccceEEecch----hhhcccCCcchheeeeeecCCC---cEEeccCcceeeeccC--Cchhhhhccchhheee
Confidence            48999999999999974    4556699999999999999866   4899999999999986  7789999999999999


Q ss_pred             EEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCCCeEEEEecC
Q psy4650         128 VCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKVGR  194 (381)
Q Consensus       128 ~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~~~  194 (381)
                      +++-|++ .++||+.||.|++|++ +|..+..+.+|+..++++...+++..+++++.|+++++|...
T Consensus       185 L~vl~~~-~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~  249 (745)
T KOG0301|consen  185 LAVLDDS-HFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD  249 (745)
T ss_pred             eEEecCC-CeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC
Confidence            9998764 5789999999999999 788899999999999999988899999999999999997654

>KOG0294|consensus

Probab=99.77  E-value=3.7e-17  Score=135.28  Aligned_cols=212  Identities=17%  Similarity=0.222  Sum_probs=160.7

Q ss_pred             eEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEEEeccCCCCEEEEEEecCCC--EEEEEeCCCCEEE
Q psy4650          71 LKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELP--IVITGSEDGSVRV  148 (381)
Q Consensus        71 ~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~p~~~--~l~s~~~d~~i~v  148 (381)
                      +..+..|.++|++++.+    .++++|||.|.+|+|||+.....+..+..|.+.|+++.|.+...  .|++|+.||.|.+
T Consensus        36 lF~~~aH~~sitavAVs----~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~i  111 (362)
T KOG0294|consen   36 LFAFSAHAGSITALAVS----GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIII  111 (362)
T ss_pred             cccccccccceeEEEec----ceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEE
Confidence            55677899999999994    34999999999999999999999999999999999999998765  8999999999999


Q ss_pred             EeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCCCeEEEEe------------cCCCceEEEecCCCEEEEEecCce
Q psy4650         149 WHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKV------------GREEPAVSMDVNGCKIIWARHSEV  216 (381)
Q Consensus       149 wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~------------~~~~~~~~~d~~~~~~~~~~~~~~  216 (381)
                      |+......+.+++.|.+.|+.++.+|.|++..+.+.|+.++.|+            .....++.|++.+...+-......
T Consensus       112 w~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~~i  191 (362)
T KOG0294|consen  112 WRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRNKI  191 (362)
T ss_pred             EEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEeccEE
Confidence            99999999999999999999999999999999999999999997            233556778776554333322222


Q ss_pred             eecccccCCc----------cccccCCceEEeeehHHHHHhccCCCcChhHHHHHHHHHhhhhhhc-----------ccc
Q psy4650         217 QQANLKTMPE----------VFENITAGVVLTLSVHVTIKYRLDISDSHRSVAKLRAAAETCMHVL-----------STL  275 (381)
Q Consensus       217 ~~~~~~~~~~----------~~~~~~dg~~l~~~~~d~~~~~~d~~~~~~~~~~l~~~~e~ak~~l-----------S~~  275 (381)
                      ....+.....          ...-.-++..|.++.++..+..||... ..+...+..+..+.|-..           +.+
T Consensus       192 ~i~q~d~A~v~~~i~~~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds-~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaS  270 (362)
T KOG0294|consen  192 DIYQLDNASVFREIENPKRILCATFLDGSELLVGGDNEWISLKDTDS-DTPLTEFLAHENRVKDIASYTNPEHEYLVTAS  270 (362)
T ss_pred             EEEecccHhHhhhhhccccceeeeecCCceEEEecCCceEEEeccCC-CccceeeecchhheeeeEEEecCCceEEEEec
Confidence            2111111000          012234788888999888888888764 445566666667776554           334


Q ss_pred             ceeeEEEecccC
Q psy4650         276 QSSNVFVESLYD  287 (381)
Q Consensus       276 ~~~~i~~~~l~~  287 (381)
                      ..+.|-+|.+-+
T Consensus       271 SDG~I~vWd~~~  282 (362)
T KOG0294|consen  271 SDGFIKVWDIDM  282 (362)
T ss_pred             cCceEEEEEccc
Confidence            455566665433

>KOG0303|consensus

Probab=99.76  E-value=1.7e-17  Score=141.07  Aligned_cols=163  Identities=20%  Similarity=0.319  Sum_probs=130.2

Q ss_pred             eeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCC-------eEEEEeccCCCCEEEEEEecCCC-EEEEEeCCC
Q psy4650          73 TLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNK-------TCVQTLEGHGQNISAVCFHPELP-IVITGSEDG  144 (381)
Q Consensus        73 ~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~-------~~~~~~~~~~~~v~~~~~~p~~~-~l~s~~~d~  144 (381)
                      .+.||+++|..++|+|-.+ +.+||||.|.+|.||++..+       +++..+.+|...|.-++|||... .|+++|.|.
T Consensus        76 ~v~GHt~~vLDi~w~PfnD-~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn  154 (472)
T KOG0303|consen   76 LVCGHTAPVLDIDWCPFND-CVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDN  154 (472)
T ss_pred             CccCccccccccccCccCC-ceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCc
Confidence            4579999999999999766 48999999999999998754       45778899999999999999775 889999999


Q ss_pred             CEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCceEEEecCCCEEEEEecCceeecccccC
Q psy4650         145 SVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKVGREEPAVSMDVNGCKIIWARHSEVQQANLKTM  224 (381)
Q Consensus       145 ~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~  224 (381)
                      +|.+||+.+|..+.++. |.+.|+++.|+.+|.++++++.|..+++          ||++++.+++....+.......  
T Consensus       155 ~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv----------~dpr~~~~v~e~~~heG~k~~R--  221 (472)
T KOG0303|consen  155 TVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRV----------IDPRRGTVVSEGVAHEGAKPAR--  221 (472)
T ss_pred             eEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEE----------EcCCCCcEeeecccccCCCcce--
Confidence            99999999999999988 9999999999999999999999999999          8888888887763332222111  


Q ss_pred             CccccccCCceEEeeehHH---HHHhccCCC
Q psy4650         225 PEVFENITAGVVLTLSVHV---TIKYRLDIS  252 (381)
Q Consensus       225 ~~~~~~~~dg~~l~~~~~d---~~~~~~d~~  252 (381)
                         .-|..+|.++.+++..   ...-.||..
T Consensus       222 ---aifl~~g~i~tTGfsr~seRq~aLwdp~  249 (472)
T KOG0303|consen  222 ---AIFLASGKIFTTGFSRMSERQIALWDPN  249 (472)
T ss_pred             ---eEEeccCceeeeccccccccceeccCcc
Confidence               1233456655555533   233345543

>KOG1407|consensus

Probab=99.75  E-value=2.1e-17  Score=133.31  Aligned_cols=179  Identities=21%  Similarity=0.377  Sum_probs=134.8

Q ss_pred             EeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEE--EeccCCCCEEEEEEecCCC-EEEEEeCCCCEEE
Q psy4650          72 KTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQ--TLEGHGQNISAVCFHPELP-IVITGSEDGSVRV  148 (381)
Q Consensus        72 ~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~--~~~~~~~~v~~~~~~p~~~-~l~s~~~d~~i~v  148 (381)
                      +.+++|...|.+++|+.+|.  .+++|+.|+++++|++.......  ...+|++.|-.++|+|..+ .+++++.|.+|++
T Consensus        14 r~~~~~~~~v~Sv~wn~~g~--~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~   91 (313)
T KOG1407|consen   14 RELQGHVQKVHSVAWNCDGT--KLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRI   91 (313)
T ss_pred             HHhhhhhhcceEEEEcccCc--eeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEE
Confidence            56779999999999999888  79999999999999998775433  4578999999999999765 8999999999999


Q ss_pred             EeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCc------------eEEEec----------CCC
Q psy4650         149 WHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKVGREEP------------AVSMDV----------NGC  206 (381)
Q Consensus       149 wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~~~~~~------------~~~~d~----------~~~  206 (381)
                      ||.+.+++........+.+ -+.|+|+|.+++.+..|..+.+.+.+...            -.+|..          .+.
T Consensus        92 wd~r~~k~~~~i~~~~eni-~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~  170 (313)
T KOG1407|consen   92 WDIRSGKCTARIETKGENI-NITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGC  170 (313)
T ss_pred             EEeccCcEEEEeeccCcce-EEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCce
Confidence            9999999998887554444 48999999999999998888774322211            012221          122


Q ss_pred             EEEEEecCceeecccccCCcc---ccccCCceEEeeehHHHHHhccCCCc
Q psy4650         207 KIIWARHSEVQQANLKTMPEV---FENITAGVVLTLSVHVTIKYRLDISD  253 (381)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~---~~~~~dg~~l~~~~~d~~~~~~d~~~  253 (381)
                      ..+.+...-.+...+.+|+..   ++|+|+|+++++++.|.....||+.+
T Consensus       171 v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~E  220 (313)
T KOG1407|consen  171 VEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDE  220 (313)
T ss_pred             EEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhH
Confidence            222222222233344444433   68999999999999999999999864

>PTZ00400 DnaK-type molecular chaperone; Provisional

Probab=99.75  E-value=1.7e-19  Score=174.28  Aligned_cols=285  Identities=15%  Similarity=0.212  Sum_probs=180.4

Q ss_pred             chhhhHHHhhhhhcccccccCCChhhHHHHhhhcceeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeeccc----
Q psy4650           2 SRLISQAKNTIIKNKRALNTELTETDIETIVRETKVDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGH----   77 (381)
Q Consensus         2 ~~~~~~~~~t~~~~k~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h----   77 (381)
                      +++.+||+||++.+||++|++|+++.++...+..||.++..+++... +...  +  +.|.|.+....++..++..    
T Consensus        95 ~~~~~~p~~ti~~~KrliG~~~~d~~~~~~~~~~p~~~~~~~~~~~~-~~~~--~--~~~speel~a~iL~~lk~~ae~~  169 (663)
T PTZ00400         95 RQAVTNPENTVFATKRLIGRRYDEDATKKEQKILPYKIVRASNGDAW-IEAQ--G--KKYSPSQIGAFVLEKMKETAESY  169 (663)
T ss_pred             HhHHhCCcceehhhhhhcCCCcCcHHHHhhhccCCeEEEecCCCceE-EEEC--C--EEECHHHHHHHHHHHHHHHHHHH
Confidence            56789999999999999999999999999999999999877654322 2222  2  4678776666666655432    


Q ss_pred             -cccEEEEEee-e----CCCccEEEEEcCCCeEEEEECCCCeEEEEeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeC
Q psy4650          78 -EKGVNCVDYY-H----GGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHS  151 (381)
Q Consensus        78 -~~~v~~~~~~-~----~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~  151 (381)
                       ...|..+..+ |    +.++..+.-+.        ....-..+..+..+++...+.....        ..+..+.|+|+
T Consensus       170 lg~~v~~~VITVPa~f~~~qR~a~~~Aa--------~~AGl~v~~li~EptAAAlay~~~~--------~~~~~vlV~Dl  233 (663)
T PTZ00400        170 LGRKVKQAVITVPAYFNDSQRQATKDAG--------KIAGLDVLRIINEPTAAALAFGMDK--------NDGKTIAVYDL  233 (663)
T ss_pred             hCCCCceEEEEECCCCCHHHHHHHHHHH--------HHcCCceEEEeCchHHHHHHhcccc--------CCCcEEEEEeC
Confidence             1122222211 1    00000000000        0011122333333332222111111        13567899999


Q ss_pred             CCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCceEEEecCCCEEEEEecCceeecccccCCcccccc
Q psy4650         152 GTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKVGREEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENI  231 (381)
Q Consensus       152 ~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (381)
                      ..|+...++-.         +. +|          .+.+          ...            .....++|...     
T Consensus       234 GgGT~DvSv~~---------~~-~g----------~~~v----------~a~------------~gd~~LGG~d~-----  266 (663)
T PTZ00400        234 GGGTFDISILE---------IL-GG----------VFEV----------KAT------------NGNTSLGGEDF-----  266 (663)
T ss_pred             CCCeEEEEEEE---------ec-CC----------eeEE----------Eec------------ccCCCcCHHHH-----
Confidence            88876554321         11 11          1111          000            00012222221     


Q ss_pred             CCceEEeeehHHHHHhccCCCcChhHHHHHHHHHhhhhhhccccceeeEEEecccCC----cccccccChHHHHHHHHHH
Q psy4650         232 TAGVVLTLSVHVTIKYRLDISDSHRSVAKLRAAAETCMHVLSTLQSSNVFVESLYDG----LDFHHNVSRARFESLIGGL  307 (381)
Q Consensus       232 ~dg~~l~~~~~d~~~~~~d~~~~~~~~~~l~~~~e~ak~~lS~~~~~~i~~~~l~~g----~~~~~~itr~~fe~l~~~l  307 (381)
                      +....-++.......+..++..+++++++|+.+||++|+.||...++.+.++.++.+    .++..++||++||+++.++
T Consensus       267 D~~l~~~l~~~f~~~~~~~~~~~~~a~~~L~~~aE~aK~~LS~~~~~~i~i~~~~~d~~g~~~~~~~itR~efe~l~~~l  346 (663)
T PTZ00400        267 DQRILNYLIAEFKKQQGIDLKKDKLALQRLREAAETAKIELSSKTQTEINLPFITADQSGPKHLQIKLSRAKLEELTHDL  346 (663)
T ss_pred             HHHHHHHHHHHhhhhcCCCcccCHHHHHHHHHHHHHHHHHcCCCCceEEEEEeeccCCCCceEEEEEECHHHHHHHHHHH
Confidence            111111122233334556777788999999999999999999999999999877644    4789999999999999999


Q ss_pred             hhhhhhhhHhhhccccceeeEeeccccCcceEEeecHHHHHHHHHHHHHH
Q psy4650         308 LTSFVQPCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIGGLLTS  357 (381)
Q Consensus       308 ~~~~~~~~~~~Ls~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~  357 (381)
                      +.++.++++++|..   +++..+.+..++++||++++|.++++++++|++
T Consensus       347 ~~~~~~~i~~~L~~---a~~~~~~i~~ViLvGGssriP~v~~~l~~~f~~  393 (663)
T PTZ00400        347 LKKTIEPCEKCIKD---AGVKKDELNDVILVGGMTRMPKVSETVKKIFGK  393 (663)
T ss_pred             HHHHHHHHHHHHHH---cCCCHHHCcEEEEECCccCChHHHHHHHHHhCC
Confidence            99999999999987   566677888999999999999999999999985

>PRK13410 molecular chaperone DnaK; Provisional

Probab=99.74  E-value=4.5e-19  Score=170.84  Aligned_cols=293  Identities=18%  Similarity=0.213  Sum_probs=183.0

Q ss_pred             chhhhHHHhhhhhcccccccCCChhhHHHHhhhcceeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeecccc---
Q psy4650           2 SRLISQAKNTIIKNKRALNTELTETDIETIVRETKVDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHE---   78 (381)
Q Consensus         2 ~~~~~~~~~t~~~~k~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~---   78 (381)
                      +++.+||+||++.+||+||+++.+  ++...+..+|.+...+.+ .+.+.+...+  +.|.+.+....++..++.+.   
T Consensus        56 ~~~~~~p~~ti~~~KRliG~~~~~--~~~~~~~~~~~v~~~~~g-~~~i~~~~~~--~~~speel~a~iL~~lk~~ae~~  130 (668)
T PRK13410         56 RQLVLNPQNTFYNLKRFIGRRYDE--LDPESKRVPYTIRRNEQG-NVRIKCPRLE--REFAPEELSAMILRKLADDASRY  130 (668)
T ss_pred             HhhHhCccceehHHhhhhCCCchh--hHHhhccCCeEEEECCCC-cEEEEEecCC--eEEcHHHHHHHHHHHHHHHHHHH
Confidence            567899999999999999999976  556677889999877653 3444443332  57888776666666665322   


Q ss_pred             --ccEEEEEee-e----CCCccEEEEEcCCCeEEEEECCCCeEEEEeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeC
Q psy4650          79 --KGVNCVDYY-H----GGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHS  151 (381)
Q Consensus        79 --~~v~~~~~~-~----~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~  151 (381)
                        ..|..+.++ |    +.++..+..+.        ....-..+..+..+++...+..+..        ...+.+.|+|+
T Consensus       131 lg~~v~~~VITVPa~f~~~qR~a~~~Aa--------~~AGl~v~~li~EPtAAAlayg~~~--------~~~~~vlV~Dl  194 (668)
T PRK13410        131 LGEPVTGAVITVPAYFNDSQRQATRDAG--------RIAGLEVERILNEPTAAALAYGLDR--------SSSQTVLVFDL  194 (668)
T ss_pred             hCCCcceEEEEECCCCCHHHHHHHHHHH--------HHcCCCeEEEecchHHHHHHhcccc--------CCCCEEEEEEC
Confidence              223222211 1    11100000000        0011122333333333222211111        13567999999


Q ss_pred             CCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCceEEEecCCCEEEEEecCceeecccccCCcccccc
Q psy4650         152 GTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKVGREEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENI  231 (381)
Q Consensus       152 ~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (381)
                      ..|+...++-.....+..        .++++                  .|                ..++|...     
T Consensus       195 GgGT~Dvsv~~~~~g~~~--------V~at~------------------gd----------------~~lGG~df-----  227 (668)
T PRK13410        195 GGGTFDVSLLEVGNGVFE--------VKATS------------------GD----------------TQLGGNDF-----  227 (668)
T ss_pred             CCCeEEEEEEEEcCCeEE--------EEEee------------------cC----------------CCCChhHH-----
Confidence            988765544211111100        01111                  11                11222221     


Q ss_pred             CCceEEeeehHHHHHhccCCCcChhHHHHHHHHHhhhhhhccccceeeEEEecccCC----cccccccChHHHHHHHHHH
Q psy4650         232 TAGVVLTLSVHVTIKYRLDISDSHRSVAKLRAAAETCMHVLSTLQSSNVFVESLYDG----LDFHHNVSRARFESLIGGL  307 (381)
Q Consensus       232 ~dg~~l~~~~~d~~~~~~d~~~~~~~~~~l~~~~e~ak~~lS~~~~~~i~~~~l~~g----~~~~~~itr~~fe~l~~~l  307 (381)
                      +....-++.......+..++..+++++.+|+.+||++|+.||....+.+.++.++.+    .++...+||++||++|.++
T Consensus       228 D~~l~~~l~~~f~~~~~~d~~~~~~a~~rL~~~aEkaK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itR~~FE~l~~~l  307 (668)
T PRK13410        228 DKRIVDWLAEQFLEKEGIDLRRDRQALQRLTEAAEKAKIELSGVSVTDISLPFITATEDGPKHIETRLDRKQFESLCGDL  307 (668)
T ss_pred             HHHHHHHHHHHHHhhhCCCcccCHHHHHHHHHHHHHHHHhcCCCCceEEEEeeeecCCCCCeeEEEEECHHHHHHHHHHH
Confidence            010111122233344556777788999999999999999999999999999987654    4688899999999999999


Q ss_pred             hhhhhhhhHhhhccccceeeEeeccccCcceEEeecHHHHHHHHHHHHHH----hHHHHHHH
Q psy4650         308 LTSFVQPCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIGGLLTS----FVQPIEDV  365 (381)
Q Consensus       308 ~~~~~~~~~~~Ls~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~----~~~~~~~~  365 (381)
                      +.++.++++++|..   +.+..++++.++++||++++|.++++++++|++    .++|-+.+
T Consensus       308 ~~r~~~~i~~~L~~---ag~~~~dId~VvLVGGssRiP~V~~~l~~~fg~~~~~~~npdeaV  366 (668)
T PRK13410        308 LDRLLRPVKRALKD---AGLSPEDIDEVVLVGGSTRMPMVQQLVRTLIPREPNQNVNPDEVV  366 (668)
T ss_pred             HHHHHHHHHHHHHH---cCCChhhCcEEEEECCccccHHHHHHHHHHcCCCcccCCCCchHH
Confidence            99999999999987   566677888999999999999999999999984    44554433

>KOG0772|consensus

Probab=99.74  E-value=2e-17  Score=145.13  Aligned_cols=203  Identities=15%  Similarity=0.150  Sum_probs=143.7

Q ss_pred             CceEEEEEecCCeEEEecCCCccce--eeEee-ccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEE-----
Q psy4650          45 MIEYKISYQESSRVKAFNPIQVATL--ILKTL-YGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQ-----  116 (381)
Q Consensus        45 ~~~~~~s~~~d~~v~i~~~~~~~~~--~~~~l-~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~-----  116 (381)
                      .+.-+++|+.|-+|++||...-...  ..+.| ......|.++.|++.++  .|+..+.....+++|-.......     
T Consensus       178 ~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~--~iLvvsg~aqakl~DRdG~~~~e~~KGD  255 (641)
T KOG0772|consen  178 SGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGD--QILVVSGSAQAKLLDRDGFEIVEFSKGD  255 (641)
T ss_pred             CCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCC--eEEEEecCcceeEEccCCceeeeeeccc
Confidence            3668899999999999998542221  12222 23456899999999887  67777778889999876543222     


Q ss_pred             -------EeccCCCCEEEEEEecCCC-EEEEEeCCCCEEEEeCCCCe-eeEEEe-----cCCcceEEEEEcCCCCEEEEE
Q psy4650         117 -------TLEGHGQNISAVCFHPELP-IVITGSEDGSVRVWHSGTHR-LEISLT-----YGLERVWTISSLKGSNNVAIG  182 (381)
Q Consensus       117 -------~~~~~~~~v~~~~~~p~~~-~l~s~~~d~~i~vwd~~~~~-~~~~~~-----~~~~~v~~v~~~~~~~~l~~~  182 (381)
                             .-+||.+.++|.+|+|..+ .+++++.||++|+||+...+ .+..+.     +..-.+++++|+|+|+.+|+|
T Consensus       256 QYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAag  335 (641)
T KOG0772|consen  256 QYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAG  335 (641)
T ss_pred             hhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhc
Confidence                   2468999999999999765 89999999999999997543 333332     344578999999999999999


Q ss_pred             eCCCeEEEEecCCCceEEEecCCCEEEEEecCceeecccccCCccccccCCceEEeeehHHHHHhccCCCcChhHHHH
Q psy4650         183 YDEGSVLLKVGREEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSVHVTIKYRLDISDSHRSVAK  260 (381)
Q Consensus       183 ~~dg~v~i~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~d~~~~~~d~~~~~~~~~~  260 (381)
                      +.||.|.+|.-+.     |-.+....+-..  +....   .... +.|++||++|++-+.|....+||++...+++..
T Consensus       336 c~DGSIQ~W~~~~-----~~v~p~~~vk~A--H~~g~---~Its-i~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~  402 (641)
T KOG0772|consen  336 CLDGSIQIWDKGS-----RTVRPVMKVKDA--HLPGQ---DITS-ISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNV  402 (641)
T ss_pred             ccCCceeeeecCC-----cccccceEeeec--cCCCC---ceeE-EEeccccchhhhccCCCceeeeeccccccchhh
Confidence            9999999955221     111111111111  11111   1112 578999999999999999999999887665543

>KOG1332|consensus

Probab=99.74  E-value=1.2e-17  Score=133.57  Aligned_cols=154  Identities=16%  Similarity=0.181  Sum_probs=129.1

Q ss_pred             ecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCC---eEEEE
Q psy4650          41 TNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNK---TCVQT  117 (381)
Q Consensus        41 ~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~---~~~~~  117 (381)
                      .+|.-+++|++++.||.|.||.-....-...+....|...|++++|.|.+....|++++.||.|.|.++++.   .....
T Consensus        65 ahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki  144 (299)
T KOG1332|consen   65 AHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKI  144 (299)
T ss_pred             cccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhh
Confidence            356678999999999999999876544444566778999999999999888888999999999999988764   23345


Q ss_pred             eccCCCCEEEEEEecC---C-----------CEEEEEeCCCCEEEEeCCCCee--eEEEecCCcceEEEEEcCCC----C
Q psy4650         118 LEGHGQNISAVCFHPE---L-----------PIVITGSEDGSVRVWHSGTHRL--EISLTYGLERVWTISSLKGS----N  177 (381)
Q Consensus       118 ~~~~~~~v~~~~~~p~---~-----------~~l~s~~~d~~i~vwd~~~~~~--~~~~~~~~~~v~~v~~~~~~----~  177 (381)
                      ...|.-+|++++|.|.   |           ..|++||.|..|+||+...++.  ...+.+|.+.|+.++|.|.-    .
T Consensus       145 ~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s  224 (299)
T KOG1332|consen  145 VFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKS  224 (299)
T ss_pred             hhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCce
Confidence            5789999999999996   4           3599999999999999987643  44578999999999999964    4


Q ss_pred             EEEEEeCCCeEEEEecC
Q psy4650         178 NVAIGYDEGSVLLKVGR  194 (381)
Q Consensus       178 ~l~~~~~dg~v~i~~~~  194 (381)
                      ++|+++.||++.||..+
T Consensus       225 ~iAS~SqDg~viIwt~~  241 (299)
T KOG1332|consen  225 TIASCSQDGTVIIWTKD  241 (299)
T ss_pred             eeEEecCCCcEEEEEec
Confidence            79999999999998755

>KOG0641|consensus

Probab=99.74  E-value=5.5e-16  Score=122.74  Aligned_cols=199  Identities=15%  Similarity=0.204  Sum_probs=147.6

Q ss_pred             ceeeeecCCCceEEEEEecCCeEEEecCCC-------------ccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCC
Q psy4650          36 KVDITTNKDMIEYKISYQESSRVKAFNPIQ-------------VATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDR  102 (381)
Q Consensus        36 ~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~-------------~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~  102 (381)
                      ..++.+.|.++ .-+.|+...+.++-....             .+.-....-+.|.+.|.|.+|+|+|+  ++++|+.|+
T Consensus        35 irav~fhp~g~-lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~ge--liatgsndk  111 (350)
T KOG0641|consen   35 IRAVAFHPAGG-LYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGE--LIATGSNDK  111 (350)
T ss_pred             eeeEEecCCCc-eEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccC--eEEecCCCc
Confidence            34566777755 445567777888764311             11112233457899999999999998  899999999


Q ss_pred             eEEEEECCC----------------------------------------------------CeEEEEeccCCCCEEEEEE
Q psy4650         103 LVKIWDYQN----------------------------------------------------KTCVQTLEGHGQNISAVCF  130 (381)
Q Consensus       103 ~v~vwd~~~----------------------------------------------------~~~~~~~~~~~~~v~~~~~  130 (381)
                      +|++.-+..                                                    |.....+.+|++.|.++ +
T Consensus       112 ~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilal-y  190 (350)
T KOG0641|consen  112 TIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILAL-Y  190 (350)
T ss_pred             eEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEE-E
Confidence            999875532                                                    22334466788877765 3


Q ss_pred             ecCCCEEEEEeCCCCEEEEeCCCCeeeEEEec-------CCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCceEEEec
Q psy4650         131 HPELPIVITGSEDGSVRVWHSGTHRLEISLTY-------GLERVWTISSLKGSNNVAIGYDEGSVLLKVGREEPAVSMDV  203 (381)
Q Consensus       131 ~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~-------~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~~~~~~~~~~d~  203 (381)
                      +-++-.+++|+.|.+|++||++-..++.++..       .++.|.+++..|.|++|++|..|....+          ||.
T Consensus       191 swn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~l----------ydi  260 (350)
T KOG0641|consen  191 SWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCML----------YDI  260 (350)
T ss_pred             EecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEE----------EEe
Confidence            44678999999999999999998888777642       2357999999999999999999999998          999


Q ss_pred             CCCEEEEEecCceeecccccCCccccccCCceEEeeehHHHHHhccCCCcC
Q psy4650         204 NGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSVHVTIKYRLDISDS  254 (381)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~d~~~~~~d~~~~  254 (381)
                      ++++++.....+...  +..    +.|+|..-++.+++.|..+..-|+..+
T Consensus       261 rg~r~iq~f~phsad--ir~----vrfsp~a~yllt~syd~~ikltdlqgd  305 (350)
T KOG0641|consen  261 RGGRMIQRFHPHSAD--IRC----VRFSPGAHYLLTCSYDMKIKLTDLQGD  305 (350)
T ss_pred             eCCceeeeeCCCccc--eeE----EEeCCCceEEEEecccceEEEeecccc
Confidence            999988776554321  111    468899999999999988887777554

>KOG0301|consensus

Probab=99.74  E-value=9.8e-17  Score=145.52  Aligned_cols=145  Identities=16%  Similarity=0.356  Sum_probs=127.3

Q ss_pred             eeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEE
Q psy4650          37 VDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQ  116 (381)
Q Consensus        37 ~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~  116 (381)
                      .++...+.+  .+++|+.|.+|++|.-    ...++++.||++.|..+++-+++.   ++||+.||.|+.|++ +|.++.
T Consensus       144 WAv~~l~e~--~~vTgsaDKtIklWk~----~~~l~tf~gHtD~VRgL~vl~~~~---flScsNDg~Ir~w~~-~ge~l~  213 (745)
T KOG0301|consen  144 WAVASLPEN--TYVTGSADKTIKLWKG----GTLLKTFSGHTDCVRGLAVLDDSH---FLSCSNDGSIRLWDL-DGEVLL  213 (745)
T ss_pred             eeeeecCCC--cEEeccCcceeeeccC----CchhhhhccchhheeeeEEecCCC---eEeecCCceEEEEec-cCceee
Confidence            456666654  6889999999999984    567889999999999999998765   899999999999999 788899


Q ss_pred             EeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCCCeEEEEecC
Q psy4650         117 TLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKVGR  194 (381)
Q Consensus       117 ~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~~~  194 (381)
                      ...+|+.-|.+++..+++..++++|+|+++++|+..  .+.+.+....-.++++++.++|. +++|++||.+++|..+
T Consensus       214 ~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~  288 (745)
T KOG0301|consen  214 EMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGD-IVVGGSDGRVRVFTVD  288 (745)
T ss_pred             eeeccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeCCC-EEEeccCceEEEEEec
Confidence            999999999999988889999999999999999986  77777877777999999999987 5678889999998743

>KOG0302|consensus

Probab=99.74  E-value=2.6e-17  Score=139.28  Aligned_cols=196  Identities=19%  Similarity=0.191  Sum_probs=145.2

Q ss_pred             CceEEEEEecCCeEEEecCCC--------------ccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECC
Q psy4650          45 MIEYKISYQESSRVKAFNPIQ--------------VATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQ  110 (381)
Q Consensus        45 ~~~~~~s~~~d~~v~i~~~~~--------------~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~  110 (381)
                      ...+.++.+..|.|++|++..              ....++.++.+|.+.=++++|||.... .++||..-+.|++|...
T Consensus       164 ~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g-~LlsGDc~~~I~lw~~~  242 (440)
T KOG0302|consen  164 NEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTG-RLLSGDCVKGIHLWEPS  242 (440)
T ss_pred             CcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccc-ccccCccccceEeeeec
Confidence            356888999999999999732              123467888999999999999995543 58899999999999998


Q ss_pred             CCeE---EEEeccCCCCEEEEEEecCCC-EEEEEeCCCCEEEEeCCCCee--eEEEecCCcceEEEEEcCCCCEEEEEeC
Q psy4650         111 NKTC---VQTLEGHGQNISAVCFHPELP-IVITGSEDGSVRVWHSGTHRL--EISLTYGLERVWTISSLKGSNNVAIGYD  184 (381)
Q Consensus       111 ~~~~---~~~~~~~~~~v~~~~~~p~~~-~l~s~~~d~~i~vwd~~~~~~--~~~~~~~~~~v~~v~~~~~~~~l~~~~~  184 (381)
                      ++.-   ...+.+|+..|-.++|+|... .++|||.||+|+|||.+.+..  ....+.|.+.|+.+.|+..-.+||+|++
T Consensus       243 ~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~D  322 (440)
T KOG0302|consen  243 TGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGD  322 (440)
T ss_pred             cCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCC
Confidence            8742   345677999999999999765 899999999999999998832  2333779999999999998889999999


Q ss_pred             CCeEEEEecCCCceEEEecCCCEEEEEecCceeecccccCCccccccC-CceEEeeehHHHHHhccCCCcC
Q psy4650         185 EGSVLLKVGREEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENIT-AGVVLTLSVHVTIKYRLDISDS  254 (381)
Q Consensus       185 dg~v~i~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-dg~~l~~~~~d~~~~~~d~~~~  254 (381)
                      ||+++||+-+.-       ..+.++.....+  ...+.+    ++|.| +...++.++.|..+.+||+.-.
T Consensus       323 dGt~~iwDLR~~-------~~~~pVA~fk~H--k~pIts----ieW~p~e~s~iaasg~D~QitiWDlsvE  380 (440)
T KOG0302|consen  323 DGTLSIWDLRQF-------KSGQPVATFKYH--KAPITS----IEWHPHEDSVIAASGEDNQITIWDLSVE  380 (440)
T ss_pred             CceEEEEEhhhc-------cCCCcceeEEec--cCCeeE----EEeccccCceEEeccCCCcEEEEEeecc
Confidence            999999552210       112222221111  111111    34444 3567777788888999998643

>KOG0299|consensus

Probab=99.74  E-value=2.7e-17  Score=142.43  Aligned_cols=221  Identities=19%  Similarity=0.226  Sum_probs=164.5

Q ss_pred             eeeecCCCceEEEEEecCCeEEEecCCCccce---------------eeEee-ccccccEEEEEeeeCCCccEEEEEcCC
Q psy4650          38 DITTNKDMIEYKISYQESSRVKAFNPIQVATL---------------ILKTL-YGHEKGVNCVDYYHGGDKPYLISGADD  101 (381)
Q Consensus        38 ~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~---------------~~~~l-~~h~~~v~~~~~~~~~~~~~l~s~~~d  101 (381)
                      .+...++ ..++++++.+++|.-|+.......               .+..- ++|...+.+++.+|++.  +|++|+.|
T Consensus       147 ~vals~d-~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgk--ylatgg~d  223 (479)
T KOG0299|consen  147 SVALSPD-DKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGK--YLATGGRD  223 (479)
T ss_pred             EEEeecc-ccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCc--EEEecCCC
Confidence            4444444 679999999999999987542211               11111 37889999999999887  99999999


Q ss_pred             CeEEEEECCCCeEEEEeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEE
Q psy4650         102 RLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAI  181 (381)
Q Consensus       102 ~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~  181 (381)
                      ..|.||+..+.+.+..+++|.+.|.+++|-.....+.+++.|+.+++|++.....+.++.+|.+.|..+.....++.+-+
T Consensus       224 ~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~reR~vtV  303 (479)
T KOG0299|consen  224 RHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDALSRERCVTV  303 (479)
T ss_pred             ceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeeechhcccceEEe
Confidence            99999999999999999999999999999988889999999999999998866666666667776666666666666666


Q ss_pred             EeCCCeEEEEe------------------------------cCCCceEEEecCCCEEEEEecCceeeccc-ccCC--cc-
Q psy4650         182 GYDEGSVLLKV------------------------------GREEPAVSMDVNGCKIIWARHSEVQQANL-KTMP--EV-  227 (381)
Q Consensus       182 ~~~dg~v~i~~------------------------------~~~~~~~~~d~~~~~~~~~~~~~~~~~~~-~~~~--~~-  227 (381)
                      |+.|.++++|.                              ++++.|..|+..+.++++......+.... ....  .+ 
T Consensus       304 GgrDrT~rlwKi~eesqlifrg~~~sidcv~~In~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Wi  383 (479)
T KOG0299|consen  304 GGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFINDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWI  383 (479)
T ss_pred             ccccceeEEEeccccceeeeeCCCCCeeeEEEecccceeeccCCceEEEeeecccCceeEeeccccccCCccccccccce
Confidence            66666666654                              23345555777777777665433332222 1111  11 


Q ss_pred             --ccccCCceEEeeehHHHHHhccCCCcChhHHHHH
Q psy4650         228 --FENITAGVVLTLSVHVTIKYRLDISDSHRSVAKL  261 (381)
Q Consensus       228 --~~~~~dg~~l~~~~~d~~~~~~d~~~~~~~~~~l  261 (381)
                        ++..|....+++++.++....|.+..+-+++.-+
T Consensus       384 tsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l  419 (479)
T KOG0299|consen  384 TSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLL  419 (479)
T ss_pred             eeeEecccCceEEecCCCCceEEEEecCCcccccee
Confidence              4567888999999999999999998887655443

>KOG0639|consensus

Probab=99.73  E-value=1.6e-17  Score=145.28  Aligned_cols=188  Identities=14%  Similarity=0.147  Sum_probs=149.3

Q ss_pred             ceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEEEeccCCCCE
Q psy4650          46 IEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNI  125 (381)
Q Consensus        46 ~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v  125 (381)
                      +..|+.|+.-.++-|||+......+...+..-.....+++.+||..  +..+|..||.|.|||+.+...++.|+||++++
T Consensus       477 grtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDak--vcFsccsdGnI~vwDLhnq~~VrqfqGhtDGa  554 (705)
T KOG0639|consen  477 GRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAK--VCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGA  554 (705)
T ss_pred             CceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccc--eeeeeccCCcEEEEEcccceeeecccCCCCCc
Confidence            4578888889999999997655555555655556778899999876  78889999999999999999999999999999


Q ss_pred             EEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCceEEEecCC
Q psy4650         126 SAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKVGREEPAVSMDVNG  205 (381)
Q Consensus       126 ~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~~~~~~~~~~d~~~  205 (381)
                      .|+..+++|..|-+||-|.+||.||++.+..+.... ..+.|.++.++|++.++++|-.++.+-+          ....+
T Consensus       555 scIdis~dGtklWTGGlDntvRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGMens~vev----------lh~sk  623 (705)
T KOG0639|consen  555 SCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGMENSNVEV----------LHTSK  623 (705)
T ss_pred             eeEEecCCCceeecCCCccceeehhhhhhhhhhhhh-hhhhheecccCCCccceeeecccCcEEE----------EecCC
Confidence            999999999999999999999999999988766544 4578999999999999999999999877          44432


Q ss_pred             CEEEEEecCceeecccccCCccccccCCceEEeeehHHHHHhccCCCc
Q psy4650         206 CKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSVHVTIKYRLDISD  253 (381)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~d~~~~~~d~~~  253 (381)
                      .....-...+.+.-+       +.|.+-|++.++.+.|+....|...-
T Consensus       624 p~kyqlhlheScVLS-------lKFa~cGkwfvStGkDnlLnawrtPy  664 (705)
T KOG0639|consen  624 PEKYQLHLHESCVLS-------LKFAYCGKWFVSTGKDNLLNAWRTPY  664 (705)
T ss_pred             ccceeecccccEEEE-------EEecccCceeeecCchhhhhhccCcc
Confidence            222211122222222       34667899999999998888886643

>KOG0268|consensus

Probab=99.73  E-value=1.9e-17  Score=139.35  Aligned_cols=195  Identities=15%  Similarity=0.111  Sum_probs=141.6

Q ss_pred             eeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCC-----
Q psy4650          37 VDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQN-----  111 (381)
Q Consensus        37 ~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~-----  111 (381)
                      +.+..++.....+++|+.||.|++||+.+  ..++.++++|.+.|.++++..  +  .++++|.|++|+.|.+..     
T Consensus        70 ~~lakhp~~ls~~aSGs~DG~VkiWnlsq--R~~~~~f~AH~G~V~Gi~v~~--~--~~~tvgdDKtvK~wk~~~~p~~t  143 (433)
T KOG0268|consen   70 SCLAKHPNKLSTVASGSCDGEVKIWNLSQ--RECIRTFKAHEGLVRGICVTQ--T--SFFTVGDDKTVKQWKIDGPPLHT  143 (433)
T ss_pred             chhhcCcchhhhhhccccCceEEEEehhh--hhhhheeecccCceeeEEecc--c--ceEEecCCcceeeeeccCCccee
Confidence            55666666667889999999999999974  567789999999999999976  3  588999999999997432     


Q ss_pred             ----------------------C-----------eEEEEeccCCCCEEEEEEecCCC-EEEEEeCCCCEEEEeCCCCeee
Q psy4650         112 ----------------------K-----------TCVQTLEGHGQNISAVCFHPELP-IVITGSEDGSVRVWHSGTHRLE  157 (381)
Q Consensus       112 ----------------------~-----------~~~~~~~~~~~~v~~~~~~p~~~-~l~s~~~d~~i~vwd~~~~~~~  157 (381)
                                            |           .++..+.--.+.+.++.|+|... .|++|+.|+.|.+||++.+.++
T Consensus       144 ilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl  223 (433)
T KOG0268|consen  144 ILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPL  223 (433)
T ss_pred             eeccccccccccccccccccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCcc
Confidence                                  1           12233333445678899999665 7888889999999999987765


Q ss_pred             EEE------------------------------------------ecCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCC
Q psy4650         158 ISL------------------------------------------TYGLERVWTISSLKGSNNVAIGYDEGSVLLKVGRE  195 (381)
Q Consensus       158 ~~~------------------------------------------~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~~~~  195 (381)
                      ..+                                          .+|.+.|.+|.|+|.|+-+++||-|.+|+|     
T Consensus       224 ~KVi~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRI-----  298 (433)
T KOG0268|consen  224 KKVILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRI-----  298 (433)
T ss_pred             ceeeeeccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEE-----
Confidence            432                                          245567888999999999999999999998     


Q ss_pred             CceEEEecCCCEEEEEecCceeecccccCCccccccCCceEEeeehHHHHHhccCCC
Q psy4650         196 EPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSVHVTIKYRLDIS  252 (381)
Q Consensus       196 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~d~~~~~~d~~  252 (381)
                           |..+.+.-.-...+    ..+.. -..+.|+-|.+++.+|+++..+..|...
T Consensus       299 -----f~~~~~~SRdiYht----kRMq~-V~~Vk~S~Dskyi~SGSdd~nvRlWka~  345 (433)
T KOG0268|consen  299 -----FPVNHGHSRDIYHT----KRMQH-VFCVKYSMDSKYIISGSDDGNVRLWKAK  345 (433)
T ss_pred             -----eecCCCcchhhhhH----hhhhe-eeEEEEeccccEEEecCCCcceeeeecc
Confidence                 44433221100000    00000 0114577899999999999999998753

>KOG0270|consensus

Probab=99.72  E-value=2.6e-16  Score=135.91  Aligned_cols=201  Identities=15%  Similarity=0.149  Sum_probs=148.6

Q ss_pred             eeeecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCe-EEE
Q psy4650          38 DITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKT-CVQ  116 (381)
Q Consensus        38 ~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~-~~~  116 (381)
                      .+..+.....+|++||.|.+|++||+.+  ..+..++..|.+.|.++.|+|... .+|++|+.|++|.+.|.+... .-.
T Consensus       248 ~Ls~n~~~~nVLaSgsaD~TV~lWD~~~--g~p~~s~~~~~k~Vq~l~wh~~~p-~~LLsGs~D~~V~l~D~R~~~~s~~  324 (463)
T KOG0270|consen  248 ALSWNRNFRNVLASGSADKTVKLWDVDT--GKPKSSITHHGKKVQTLEWHPYEP-SVLLSGSYDGTVALKDCRDPSNSGK  324 (463)
T ss_pred             HHHhccccceeEEecCCCceEEEEEcCC--CCcceehhhcCCceeEEEecCCCc-eEEEeccccceEEeeeccCccccCc
Confidence            3445566678999999999999999984  566788889999999999998655 489999999999999998432 222


Q ss_pred             EeccCCCCEEEEEEecCCC-EEEEEeCCCCEEEEeCCC-CeeeEEEecCCcceEEEEEcCCC-CEEEEEeCCCeEEEEec
Q psy4650         117 TLEGHGQNISAVCFHPELP-IVITGSEDGSVRVWHSGT-HRLEISLTYGLERVWTISSLKGS-NNVAIGYDEGSVLLKVG  193 (381)
Q Consensus       117 ~~~~~~~~v~~~~~~p~~~-~l~s~~~d~~i~vwd~~~-~~~~~~~~~~~~~v~~v~~~~~~-~~l~~~~~dg~v~i~~~  193 (381)
                      .++ ..+.|-.++|+|... .+.++..||+|+=+|.+. +++++++..|.+.|.++++++.- ..+++++.|+.+++|. 
T Consensus       325 ~wk-~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~-  402 (463)
T KOG0270|consen  325 EWK-FDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWK-  402 (463)
T ss_pred             eEE-eccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEe-
Confidence            333 356889999999776 677788899999999996 48999999999999999999864 5789999999999976 


Q ss_pred             CCCceEEEecCCCEEEEEecCceeecccccCCccccccCC-ceEEeeehHHHHHhccCCCcChh
Q psy4650         194 REEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITA-GVVLTLSVHVTIKYRLDISDSHR  256 (381)
Q Consensus       194 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-g~~l~~~~~d~~~~~~d~~~~~~  256 (381)
                             ++......+.........  +..    +++.|+ .-.+++++......+||...+..
T Consensus       403 -------~~~~~~~~v~~~~~~~~r--l~c----~~~~~~~a~~la~GG~k~~~~vwd~~~~~~  453 (463)
T KOG0270|consen  403 -------FDVDSPKSVKEHSFKLGR--LHC----FALDPDVAFTLAFGGEKAVLRVWDIFTNSP  453 (463)
T ss_pred             -------ecCCCCcccccccccccc--eee----cccCCCcceEEEecCccceEEEeecccChh
Confidence                   333333322221111111  111    233344 45566666666678888876543

>KOG0270|consensus

Probab=99.72  E-value=6.6e-17  Score=139.49  Aligned_cols=194  Identities=18%  Similarity=0.255  Sum_probs=145.6

Q ss_pred             CCceEEEEEecCCeEEEecCCCccc-eeeE------------------eeccccccEEEEEeeeCCCccEEEEEcCCCeE
Q psy4650          44 DMIEYKISYQESSRVKAFNPIQVAT-LILK------------------TLYGHEKGVNCVDYYHGGDKPYLISGADDRLV  104 (381)
Q Consensus        44 ~~~~~~~s~~~d~~v~i~~~~~~~~-~~~~------------------~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v  104 (381)
                      ..++|++-|..+..|.|||+.-... .+..                  .-.+|++.|.++.|+..-. +.|+|||.|.+|
T Consensus       190 ~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~-nVLaSgsaD~TV  268 (463)
T KOG0270|consen  190 GAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFR-NVLASGSADKTV  268 (463)
T ss_pred             CCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccc-eeEEecCCCceE
Confidence            4478999999999999999842111 0111                  1237999999999976544 589999999999


Q ss_pred             EEEECCCCeEEEEeccCCCCEEEEEEecCCC-EEEEEeCCCCEEEEeCCCCe-eeEEEecCCcceEEEEEcCCCC-EEEE
Q psy4650         105 KIWDYQNKTCVQTLEGHGQNISAVCFHPELP-IVITGSEDGSVRVWHSGTHR-LEISLTYGLERVWTISSLKGSN-NVAI  181 (381)
Q Consensus       105 ~vwd~~~~~~~~~~~~~~~~v~~~~~~p~~~-~l~s~~~d~~i~vwd~~~~~-~~~~~~~~~~~v~~v~~~~~~~-~l~~  181 (381)
                      ++||+.++++...+..|+..|.+++|+|..+ .|++|+.|++|.+.|.+... .-..+. ..+.|..++|.|... .+.+
T Consensus       269 ~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk-~~g~VEkv~w~~~se~~f~~  347 (463)
T KOG0270|consen  269 KLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWK-FDGEVEKVAWDPHSENSFFV  347 (463)
T ss_pred             EEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEE-eccceEEEEecCCCceeEEE
Confidence            9999999999999999999999999999665 89999999999999998422 111222 346788999999765 5777


Q ss_pred             EeCCCeEEEEecCCCceEEEecCC-CEEEEEecCceeecccccCCccccccCCceEEeeehHHHHHhccCCCcC
Q psy4650         182 GYDEGSVLLKVGREEPAVSMDVNG-CKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSVHVTIKYRLDISDS  254 (381)
Q Consensus       182 ~~~dg~v~i~~~~~~~~~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~d~~~~~~d~~~~  254 (381)
                      +..||+++-          +|.+. +.++|.+..+....  .+...   +...-..+.+++.++....|++..+
T Consensus       348 ~tddG~v~~----------~D~R~~~~~vwt~~AHd~~I--Sgl~~---n~~~p~~l~t~s~d~~Vklw~~~~~  406 (463)
T KOG0270|consen  348 STDDGTVYY----------FDIRNPGKPVWTLKAHDDEI--SGLSV---NIQTPGLLSTASTDKVVKLWKFDVD  406 (463)
T ss_pred             ecCCceEEe----------eecCCCCCceeEEEeccCCc--ceEEe---cCCCCcceeeccccceEEEEeecCC
Confidence            788999998          88865 48999987654422  22221   0113356778888888889988654

>PRK13411 molecular chaperone DnaK; Provisional

Probab=99.72  E-value=6.9e-19  Score=169.97  Aligned_cols=293  Identities=15%  Similarity=0.188  Sum_probs=179.2

Q ss_pred             chhhhHHHhhhhhcccccccCCChhhHHHHhhhcceeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeecccc---
Q psy4650           2 SRLISQAKNTIIKNKRALNTELTETDIETIVRETKVDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHE---   78 (381)
Q Consensus         2 ~~~~~~~~~t~~~~k~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~---   78 (381)
                      +++.+||+||++.+||++|++++++.  ...+..+|.++..+++. +.+...  +  +.|.+.+....++..++.+.   
T Consensus        56 ~~~~~~p~~ti~~~KrliG~~~~d~~--~~~~~~~~~~v~~~~~~-~~~~i~--~--~~~~peei~a~iL~~lk~~ae~~  128 (653)
T PRK13411         56 RQAVTNAENTVYSIKRFIGRRWDDTE--EERSRVPYTCVKGRDDT-VNVQIR--G--RNYTPQEISAMILQKLKQDAEAY  128 (653)
T ss_pred             HhhhhCcccchHHHHHHhCCCccchh--HHhhcCCceEEecCCCc-eEEEEC--C--EEECHHHHHHHHHHHHHHHHHHH
Confidence            56789999999999999999999975  35678888887765532 222221  2  35777666666565554321   


Q ss_pred             --ccEEEEEee-e----CCCccEEEEEcCCCeEEEEECCCCeEEEEeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeC
Q psy4650          79 --KGVNCVDYY-H----GGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHS  151 (381)
Q Consensus        79 --~~v~~~~~~-~----~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~  151 (381)
                        ..|..+..+ |    +.++..+..++        ....-+.+..+..+++...+.....       ...++.+.|+|+
T Consensus       129 lg~~v~~~VITVPa~f~~~qR~a~~~Aa--------~~AGl~v~~li~EPtAAAl~y~~~~-------~~~~~~vlV~Dl  193 (653)
T PRK13411        129 LGEPVTQAVITVPAYFTDAQRQATKDAG--------TIAGLEVLRIINEPTAAALAYGLDK-------QDQEQLILVFDL  193 (653)
T ss_pred             hCCCcceEEEEECCCCCcHHHHHHHHHH--------HHcCCCeEEEecchHHHHHHhcccc-------cCCCCEEEEEEc
Confidence              122222111 1    11110000000        0011122333333332222111111       113567899999


Q ss_pred             CCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCceEEEecCCCEEEEEecCceeecccccCCcccccc
Q psy4650         152 GTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKVGREEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENI  231 (381)
Q Consensus       152 ~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (381)
                      ..|+...++-.....+..        .++++                  .|                ..++|...     
T Consensus       194 GgGT~dvsi~~~~~~~~~--------V~at~------------------gd----------------~~LGG~df-----  226 (653)
T PRK13411        194 GGGTFDVSILQLGDGVFE--------VKATA------------------GN----------------NHLGGDDF-----  226 (653)
T ss_pred             CCCeEEEEEEEEeCCEEE--------EEEEe------------------cC----------------CCcCHHHH-----
Confidence            988765443211111000        01111                  11                12222221     


Q ss_pred             CCceEEeeehHHHHHhccCCCcChhHHHHHHHHHhhhhhhccccceeeEEEecccC----CcccccccChHHHHHHHHHH
Q psy4650         232 TAGVVLTLSVHVTIKYRLDISDSHRSVAKLRAAAETCMHVLSTLQSSNVFVESLYD----GLDFHHNVSRARFESLIGGL  307 (381)
Q Consensus       232 ~dg~~l~~~~~d~~~~~~d~~~~~~~~~~l~~~~e~ak~~lS~~~~~~i~~~~l~~----g~~~~~~itr~~fe~l~~~l  307 (381)
                      +....-++...+...+..++..+++++++|+.+||++|+.||...++.+.+++++.    +.++...+||++||+++.++
T Consensus       227 D~~l~~~l~~~f~~~~~~d~~~~~~~~~rL~~~aE~aK~~LS~~~~~~i~i~~~~~d~~~~~~~~~~itR~~fe~l~~~l  306 (653)
T PRK13411        227 DNCIVDWLVENFQQQEGIDLSQDKMALQRLREAAEKAKIELSSMLTTSINLPFITADETGPKHLEMELTRAKFEELTKDL  306 (653)
T ss_pred             HHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHHHHhcCCCCceEEEEeeeccCCCCCeeEEEEEcHHHHHHHHHHH
Confidence            11111112223334455677788899999999999999999999999999988754    35788999999999999999


Q ss_pred             hhhhhhhhHhhhccccceeeEeeccccCcceEEeecHHHHHHHHHHHHH-H----hHHHHHHHH
Q psy4650         308 LTSFVQPCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIGGLLT-S----FVQPIEDVL  366 (381)
Q Consensus       308 ~~~~~~~~~~~Ls~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~-~----~~~~~~~~l  366 (381)
                      +.++.++++++|..   +.+..+.++.++++||++++|.++++++++|+ +    .++|-+.+.
T Consensus       307 ~~~~~~~i~~~L~~---a~~~~~~id~ViLvGGssriP~v~~~l~~~f~~~~~~~~~npdeaVA  367 (653)
T PRK13411        307 VEATIEPMQQALKD---AGLKPEDIDRVILVGGSTRIPAVQEAIQKFFGGKQPDRSVNPDEAVA  367 (653)
T ss_pred             HHHHHHHHHHHHHH---cCCCHHHCcEEEEECCCCCcchHHHHHHHHcCCcCcCCCCCchHHHH
Confidence            99999999999987   56677788889999999999999999999996 2    356655443

>KOG1034|consensus

Probab=99.72  E-value=2.5e-17  Score=137.03  Aligned_cols=107  Identities=18%  Similarity=0.352  Sum_probs=97.2

Q ss_pred             CCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEEEe---cc
Q psy4650          44 DMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTL---EG  120 (381)
Q Consensus        44 ~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~---~~  120 (381)
                      ++..+++.++.-|.|++.|+.  +.++...+.||.+.|+.+.++|... +++++||.|.+|++|++++..++..+   .|
T Consensus       103 ~~~p~la~~G~~GvIrVid~~--~~~~~~~~~ghG~sINeik~~p~~~-qlvls~SkD~svRlwnI~~~~Cv~VfGG~eg  179 (385)
T KOG1034|consen  103 TGNPFLAAGGYLGVIRVIDVV--SGQCSKNYRGHGGSINEIKFHPDRP-QLVLSASKDHSVRLWNIQTDVCVAVFGGVEG  179 (385)
T ss_pred             CCCeeEEeecceeEEEEEecc--hhhhccceeccCccchhhhcCCCCC-cEEEEecCCceEEEEeccCCeEEEEeccccc
Confidence            346799999999999999997  4677788999999999999999765 48999999999999999999998887   46


Q ss_pred             CCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCC
Q psy4650         121 HGQNISAVCFHPELPIVITGSEDGSVRVWHSGT  153 (381)
Q Consensus       121 ~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~  153 (381)
                      |.+.|.++.|+++|.++++||.|..+++|++..
T Consensus       180 HrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~  212 (385)
T KOG1034|consen  180 HRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNV  212 (385)
T ss_pred             ccCcEEEEEEcCCCCeeeccCCcceEEEEecCh
Confidence            999999999999999999999999999999873

>KOG0303|consensus

Probab=99.72  E-value=4.3e-16  Score=132.70  Aligned_cols=205  Identities=18%  Similarity=0.179  Sum_probs=151.5

Q ss_pred             eeeeecCCCceEEEEEecCCeEEEecCCCc-----cceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCC
Q psy4650          37 VDITTNKDMIEYKISYQESSRVKAFNPIQV-----ATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQN  111 (381)
Q Consensus        37 ~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~-----~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~  111 (381)
                      .++-+.+-+...+++|+.|.+|.+|.+-+.     ....+..|.||...|--+.|+|... +.|+|++.|.+|.+|++.+
T Consensus        85 LDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~-NVLlsag~Dn~v~iWnv~t  163 (472)
T KOG0303|consen   85 LDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAP-NVLLSAGSDNTVSIWNVGT  163 (472)
T ss_pred             cccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccch-hhHhhccCCceEEEEeccC
Confidence            355666666789999999999999987432     2345678999999999999999876 4899999999999999999


Q ss_pred             CeEEEEeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEecCCc-ceEEEEEcCCCCEEEEEe---CCCe
Q psy4650         112 KTCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLE-RVWTISSLKGSNNVAIGY---DEGS  187 (381)
Q Consensus       112 ~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~-~v~~v~~~~~~~~l~~~~---~dg~  187 (381)
                      |..+.++. |.+.|.+++|+.+|.++++.+.|+.|||||.++++.+..-.+|.+ .-..+.|..+|..+-+|.   .+..
T Consensus       164 geali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq  242 (472)
T KOG0303|consen  164 GEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQ  242 (472)
T ss_pred             CceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeeccccccccc
Confidence            99888888 999999999999999999999999999999999999988766654 456677888888665554   4677


Q ss_pred             EEEEecCC--Cce--EEEecCCCEEE--EEecCceeeccc--ccCCccccccCCceEEeeehHH
Q psy4650         188 VLLKVGRE--EPA--VSMDVNGCKII--WARHSEVQQANL--KTMPEVFENITAGVVLTLSVHV  243 (381)
Q Consensus       188 v~i~~~~~--~~~--~~~d~~~~~~~--~~~~~~~~~~~~--~~~~~~~~~~~dg~~l~~~~~d  243 (381)
                      +-+|+..+  .++  ...|..+|.++  |+..+......-  .+..+++++.+|.-+++....+
T Consensus       243 ~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f  306 (472)
T KOG0303|consen  243 IALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTF  306 (472)
T ss_pred             eeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEeccc
Confidence            78887442  232  23344444432  332222211111  1223346777777666655544

>KOG1009|consensus

Probab=99.72  E-value=1.4e-16  Score=136.00  Aligned_cols=153  Identities=20%  Similarity=0.268  Sum_probs=130.5

Q ss_pred             ceeeeecCCCceEEEEEecCCeEEEecCCCc-------cceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEE
Q psy4650          36 KVDITTNKDMIEYKISYQESSRVKAFNPIQV-------ATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWD  108 (381)
Q Consensus        36 ~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~-------~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd  108 (381)
                      -+.+.++++..+.+++|+.|..|++|-....       .-..+..|..|+..|+++.|+|+|+  .++||+.+|.|.+|.
T Consensus        16 v~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~ge--lLASg~D~g~v~lWk   93 (434)
T KOG1009|consen   16 VYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGE--LLASGGDGGEVFLWK   93 (434)
T ss_pred             eEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcC--eeeecCCCceEEEEE
Confidence            3556666665669999999999999976321       2234567889999999999999998  899999999999997


Q ss_pred             CC--------C--------CeEEEEeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEecCCcceEEEEE
Q psy4650         109 YQ--------N--------KTCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISS  172 (381)
Q Consensus       109 ~~--------~--------~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~  172 (381)
                      ..        +        ......+.+|...|..++|+|++..+++++.|..+++||++.|..+..+..|...|..++|
T Consensus        94 ~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvaw  173 (434)
T KOG1009|consen   94 QGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAW  173 (434)
T ss_pred             ecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccceeec
Confidence            65        2        1234567789999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCEEEEEeCCCeEEE
Q psy4650         173 LKGSNNVAIGYDEGSVLL  190 (381)
Q Consensus       173 ~~~~~~l~~~~~dg~v~i  190 (381)
                      .|.++++++-+.|...+.
T Consensus       174 Dpl~qyv~s~s~dr~~~~  191 (434)
T KOG1009|consen  174 DPLNQYVASKSSDRHPEG  191 (434)
T ss_pred             chhhhhhhhhccCcccce
Confidence            999999999888875444

>PLN03184 chloroplast Hsp70; Provisional

Probab=99.72  E-value=1.7e-18  Score=167.38  Aligned_cols=293  Identities=15%  Similarity=0.202  Sum_probs=178.8

Q ss_pred             chhhhHHHhhhhhcccccccCCChhhHHHHhhhcceeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeecccc---
Q psy4650           2 SRLISQAKNTIIKNKRALNTELTETDIETIVRETKVDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHE---   78 (381)
Q Consensus         2 ~~~~~~~~~t~~~~k~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~---   78 (381)
                      +++.+||.||++.+||++|+++++  ++...+..+|.+...+++ .+.+.....+  +.|.+.+....++..++...   
T Consensus        93 ~~~~~~p~~ti~~~KrliG~~~~d--~~~~~~~~~~~v~~~~~~-~v~~~~~~~~--~~~speei~a~iL~~lk~~ae~~  167 (673)
T PLN03184         93 RQAVVNPENTFFSVKRFIGRKMSE--VDEESKQVSYRVVRDENG-NVKLDCPAIG--KQFAAEEISAQVLRKLVDDASKF  167 (673)
T ss_pred             HhhhhCchhhhHHHHHhhCCCcch--hhhhhhcCCeEEEecCCC-cEEEEEecCC--eEEcHHHHHHHHHHHHHHHHHHH
Confidence            567889999999999999999976  456677889998876543 3444433333  35777665555555544311   


Q ss_pred             --ccEEEEEee-e----CCCccEEEEEcCCCeEEEEECCCCeEEEEeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeC
Q psy4650          79 --KGVNCVDYY-H----GGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHS  151 (381)
Q Consensus        79 --~~v~~~~~~-~----~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~  151 (381)
                        ..|..+..+ |    +.++..+.-+.        ....-..+..+..+++...+..+..        ..++.+.|+|+
T Consensus       168 lg~~v~~~VITVPa~f~~~qR~a~~~Aa--------~~AGl~v~~li~EPtAAAlayg~~~--------~~~~~vlV~Dl  231 (673)
T PLN03184        168 LNDKVTKAVITVPAYFNDSQRTATKDAG--------RIAGLEVLRIINEPTAASLAYGFEK--------KSNETILVFDL  231 (673)
T ss_pred             hCCCCCeEEEEECCCCCHHHHHHHHHHH--------HHCCCCeEEEeCcHHHHHHHhhccc--------CCCCEEEEEEC
Confidence              122222111 1    00000000000        0011122333333332221111111        13567899999


Q ss_pred             CCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCceEEEecCCCEEEEEecCceeecccccCCcccccc
Q psy4650         152 GTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKVGREEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENI  231 (381)
Q Consensus       152 ~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (381)
                      ..|+...++-.....+..        .++++                  +|                ..+++...     
T Consensus       232 GgGT~DvSi~~~~~~~~e--------Vla~~------------------gd----------------~~LGG~df-----  264 (673)
T PLN03184        232 GGGTFDVSVLEVGDGVFE--------VLSTS------------------GD----------------THLGGDDF-----  264 (673)
T ss_pred             CCCeEEEEEEEecCCEEE--------EEEec------------------CC----------------CccCHHHH-----
Confidence            888765444211111000        01110                  01                11222221     


Q ss_pred             CCceEEeeehHHHHHhccCCCcChhHHHHHHHHHhhhhhhccccceeeEEEecccC----CcccccccChHHHHHHHHHH
Q psy4650         232 TAGVVLTLSVHVTIKYRLDISDSHRSVAKLRAAAETCMHVLSTLQSSNVFVESLYD----GLDFHHNVSRARFESLIGGL  307 (381)
Q Consensus       232 ~dg~~l~~~~~d~~~~~~d~~~~~~~~~~l~~~~e~ak~~lS~~~~~~i~~~~l~~----g~~~~~~itr~~fe~l~~~l  307 (381)
                      +....-++.......+..++..+++++.+|+.+||++|+.||...++.+.+++++.    +.++...+||++||+++.++
T Consensus       265 D~~L~~~~~~~f~~~~~~d~~~~~~~~~rL~~~aEkaK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itR~~fe~l~~~l  344 (673)
T PLN03184        265 DKRIVDWLASNFKKDEGIDLLKDKQALQRLTEAAEKAKIELSSLTQTSISLPFITATADGPKHIDTTLTRAKFEELCSDL  344 (673)
T ss_pred             HHHHHHHHHHHHHhhcCCCcccCHHHHHHHHHHHHHHHHhcCCCCcceEEEEeeeccCCCCceEEEEECHHHHHHHHHHH
Confidence            01111112223334455667778889999999999999999999999999887653    35788999999999999999


Q ss_pred             hhhhhhhhHhhhccccceeeEeeccccCcceEEeecHHHHHHHHHHHHHH----hHHHHHHH
Q psy4650         308 LTSFVQPCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIGGLLTS----FVQPIEDV  365 (381)
Q Consensus       308 ~~~~~~~~~~~Ls~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~----~~~~~~~~  365 (381)
                      +.++.++++++|..   +.++.++|+.++++||++++|.++++++++|++    .++|-+.+
T Consensus       345 ~~r~~~~i~~~L~~---a~~~~~dId~ViLvGGssriP~V~~~i~~~fg~~~~~~~npdeaV  403 (673)
T PLN03184        345 LDRCKTPVENALRD---AKLSFKDIDEVILVGGSTRIPAVQELVKKLTGKDPNVTVNPDEVV  403 (673)
T ss_pred             HHHHHHHHHHHHHH---cCCChhHccEEEEECCccccHHHHHHHHHHhCCCcccccCcchHH
Confidence            99999999999987   566778889999999999999999999999974    44555433

>KOG0299|consensus

Probab=99.71  E-value=4.4e-16  Score=135.05  Aligned_cols=149  Identities=21%  Similarity=0.342  Sum_probs=114.2

Q ss_pred             eeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEE
Q psy4650          37 VDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQ  116 (381)
Q Consensus        37 ~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~  116 (381)
                      ..+...++ +.|+++|+.|..+.||+..+  ...++.+++|.+.|.+++|-...+  .+.+++.|++|++|++.....+.
T Consensus       206 l~~avS~D-gkylatgg~d~~v~Iw~~~t--~ehv~~~~ghr~~V~~L~fr~gt~--~lys~s~Drsvkvw~~~~~s~ve  280 (479)
T KOG0299|consen  206 LTLAVSSD-GKYLATGGRDRHVQIWDCDT--LEHVKVFKGHRGAVSSLAFRKGTS--ELYSASADRSVKVWSIDQLSYVE  280 (479)
T ss_pred             EEEEEcCC-CcEEEecCCCceEEEecCcc--cchhhcccccccceeeeeeecCcc--ceeeeecCCceEEEehhHhHHHH
Confidence            34455556 67999999999999999974  455677999999999999976544  68999999999999999888888


Q ss_pred             EeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCCCeEEEEe
Q psy4650         117 TLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKV  192 (381)
Q Consensus       117 ~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~  192 (381)
                      ++.||.+.|..+....-++.+..|+.|+++++|++.. .....+.++.+.+.|++|-.+ ..+++|++||.|.+|.
T Consensus       281 tlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~e-esqlifrg~~~sidcv~~In~-~HfvsGSdnG~IaLWs  354 (479)
T KOG0299|consen  281 TLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPE-ESQLIFRGGEGSIDCVAFIND-EHFVSGSDNGSIALWS  354 (479)
T ss_pred             HHhCCccceeeechhcccceEEeccccceeEEEeccc-cceeeeeCCCCCeeeEEEecc-cceeeccCCceEEEee
Confidence            8889998888887666666666666788888888733 233345556667777776543 4667777777777765

>KOG4378|consensus

Probab=99.71  E-value=3.2e-17  Score=143.30  Aligned_cols=230  Identities=17%  Similarity=0.160  Sum_probs=169.2

Q ss_pred             hhhhhcccccccCCChhhHHHHhhhcceeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeC
Q psy4650          10 NTIIKNKRALNTELTETDIETIVRETKVDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHG   89 (381)
Q Consensus        10 ~t~~~~k~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~   89 (381)
                      .++++.|+-.|..-+-|-+.+..-..-.++..... ..|+++|+..+.|+|||+.  ...+.+.+++|+..|+++.+...
T Consensus        56 dk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~s~-S~y~~sgG~~~~Vkiwdl~--~kl~hr~lkdh~stvt~v~YN~~  132 (673)
T KOG4378|consen   56 DKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACASQ-SLYEISGGQSGCVKIWDLR--AKLIHRFLKDHQSTVTYVDYNNT  132 (673)
T ss_pred             ceeEEEecccCCCCccceeeccccchHHHHhhhhc-ceeeeccCcCceeeehhhH--HHHHhhhccCCcceeEEEEecCC
Confidence            34556666666643444333333322222333322 4799999999999999997  45677889999999999999875


Q ss_pred             CCccEEEEEcCCCeEEEEECCCCeEEEEeccC-CCCEEEEEEecCCC-EEEEEeCCCCEEEEeCCCCeeeEEE-ecCCcc
Q psy4650          90 GDKPYLISGADDRLVKIWDYQNKTCVQTLEGH-GQNISAVCFHPELP-IVITGSEDGSVRVWHSGTHRLEISL-TYGLER  166 (381)
Q Consensus        90 ~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~-~~~v~~~~~~p~~~-~l~s~~~d~~i~vwd~~~~~~~~~~-~~~~~~  166 (381)
                      .+  +||+++..|.|.+..+.++.....|... ...|.-+.|+|..+ +|.+++.+|.|.+||+.+..+...+ ..|..+
T Consensus       133 De--yiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP  210 (673)
T KOG4378|consen  133 DE--YIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAP  210 (673)
T ss_pred             cc--eeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCC
Confidence            55  9999999999999999998877777644 34566899999887 6678899999999999988777665 458899


Q ss_pred             eEEEEEcCCC-CEEEEEeCCCeEEEEecCCCceEEEecCCCEEEEEecCceeecccccCCccccccCCceEEeeehHHHH
Q psy4650         167 VWTISSLKGS-NNVAIGYDEGSVLLKVGREEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSVHVTI  245 (381)
Q Consensus       167 v~~v~~~~~~-~~l~~~~~dg~v~i~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~d~~  245 (381)
                      ...+||+|-. .++++.+.|..+.+          ||..+....-.+..+.   .+.+    ++|+++|.+|+.+...++
T Consensus       211 ~~gicfspsne~l~vsVG~Dkki~~----------yD~~s~~s~~~l~y~~---Plst----vaf~~~G~~L~aG~s~G~  273 (673)
T KOG4378|consen  211 CRGICFSPSNEALLVSVGYDKKINI----------YDIRSQASTDRLTYSH---PLST----VAFSECGTYLCAGNSKGE  273 (673)
T ss_pred             cCcceecCCccceEEEecccceEEE----------eecccccccceeeecC---Ccce----eeecCCceEEEeecCCce
Confidence            9999999965 56777788888887          7775443322221111   1111    578899999999999999


Q ss_pred             HhccCCCcChhHHHHH
Q psy4650         246 KYRLDISDSHRSVAKL  261 (381)
Q Consensus       246 ~~~~d~~~~~~~~~~l  261 (381)
                      .+.+|++..+.++..+
T Consensus       274 ~i~YD~R~~k~Pv~v~  289 (673)
T KOG4378|consen  274 LIAYDMRSTKAPVAVR  289 (673)
T ss_pred             EEEEecccCCCCceEe
Confidence            9999998876665444

>KOG0278|consensus

Probab=99.70  E-value=4.4e-16  Score=125.05  Aligned_cols=139  Identities=17%  Similarity=0.209  Sum_probs=121.1

Q ss_pred             ceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEEEeccCCCCE
Q psy4650          46 IEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNI  125 (381)
Q Consensus        46 ~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v  125 (381)
                      ...+++.++|++||+||...  ...+++|. -..+|+++.++++|.   +++...-+.|+.||..+-..+..++- ...|
T Consensus       155 D~~iLSSadd~tVRLWD~rT--gt~v~sL~-~~s~VtSlEvs~dG~---ilTia~gssV~Fwdaksf~~lKs~k~-P~nV  227 (334)
T KOG0278|consen  155 DKCILSSADDKTVRLWDHRT--GTEVQSLE-FNSPVTSLEVSQDGR---ILTIAYGSSVKFWDAKSFGLLKSYKM-PCNV  227 (334)
T ss_pred             CceEEeeccCCceEEEEecc--CcEEEEEe-cCCCCcceeeccCCC---EEEEecCceeEEeccccccceeeccC-cccc
Confidence            34677779999999999874  44555553 467899999999887   67777888999999999888888874 3578


Q ss_pred             EEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEE-ecCCcceEEEEEcCCCCEEEEEeCCCeEEEE
Q psy4650         126 SAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISL-TYGLERVWTISSLKGSNNVAIGYDEGSVLLK  191 (381)
Q Consensus       126 ~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~-~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~  191 (381)
                      .+.+.+|+...+++|+.|..++.||..+|..+..+ ++|.++|.|+.|+|+|...++||.||++++|
T Consensus       228 ~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlW  294 (334)
T KOG0278|consen  228 ESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLW  294 (334)
T ss_pred             ccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEE
Confidence            99999999999999999999999999999998886 8899999999999999999999999999994

>KOG0639|consensus

Probab=99.70  E-value=5.2e-17  Score=142.18  Aligned_cols=202  Identities=16%  Similarity=0.178  Sum_probs=151.9

Q ss_pred             hcceeeeecCCCceEEEEEecCCeEEEecCCCcc-ceeeEeecc--ccccEEEEEeeeCCCccEEEEEcCCCeEEEEECC
Q psy4650          34 ETKVDITTNKDMIEYKISYQESSRVKAFNPIQVA-TLILKTLYG--HEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQ  110 (381)
Q Consensus        34 ~~~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~-~~~~~~l~~--h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~  110 (381)
                      +..++++-.+. ...+++|+. |.|++||+.+.. ...+..|..  -...|.++...|+|.  .|++|+.-.++.|||+.
T Consensus       420 EvVcAvtIS~~-trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgr--tLivGGeastlsiWDLA  495 (705)
T KOG0639|consen  420 EVVCAVTISNP-TRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGR--TLIVGGEASTLSIWDLA  495 (705)
T ss_pred             cEEEEEEecCC-cceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCc--eEEeccccceeeeeecc
Confidence            34445444433 668899876 689999996532 223444433  346899999999887  79999999999999998


Q ss_pred             CCeEE--EEeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCCCeE
Q psy4650         111 NKTCV--QTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSV  188 (381)
Q Consensus       111 ~~~~~--~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v  188 (381)
                      ...+.  ..+........+++.+||.+...+|+.||.|.|||+++...+..+.+|.+.+.|+..+++|..|.+|+-|.++
T Consensus       496 apTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntv  575 (705)
T KOG0639|consen  496 APTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTV  575 (705)
T ss_pred             CCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccce
Confidence            76543  2333333456788999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEecCCCceEEEecCCCEEEEEecCceeecccccCCccccccCCceEEeeehHHHHHhccCCCcChh
Q psy4650         189 LLKVGREEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSVHVTIKYRLDISDSHR  256 (381)
Q Consensus       189 ~i~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~d~~~~~~d~~~~~~  256 (381)
                      +.          ||.+.++.+.......+..+       +...|.+.+++++.....+-+.......+
T Consensus       576 Rc----------WDlregrqlqqhdF~SQIfS-------Lg~cP~~dWlavGMens~vevlh~skp~k  626 (705)
T KOG0639|consen  576 RC----------WDLREGRQLQQHDFSSQIFS-------LGYCPTGDWLAVGMENSNVEVLHTSKPEK  626 (705)
T ss_pred             ee----------hhhhhhhhhhhhhhhhhhee-------cccCCCccceeeecccCcEEEEecCCccc
Confidence            98          88887776544333322222       33468999999998876555554444433

>KOG0647|consensus

Probab=99.69  E-value=3.6e-16  Score=128.82  Aligned_cols=124  Identities=19%  Similarity=0.305  Sum_probs=103.0

Q ss_pred             ccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCC-eEE-EEeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCC
Q psy4650          77 HEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNK-TCV-QTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTH  154 (381)
Q Consensus        77 h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~-~~~-~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~  154 (381)
                      -.+.|.+++|||... .+++.+|+|++||+|++... ... .....|.++|.+++|+.+|..+++|+.|+.+++||+.++
T Consensus        26 P~DsIS~l~FSP~~~-~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~  104 (347)
T KOG0647|consen   26 PEDSISALAFSPQAD-NLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG  104 (347)
T ss_pred             cccchheeEeccccC-ceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC
Confidence            357899999999443 47889999999999999863 322 345679999999999999999999999999999999999


Q ss_pred             eeeEEEecCCcceEEEEEcCCCC--EEEEEeCCCeEEEEecCCCceEEEecCCCEEEEEe
Q psy4650         155 RLEISLTYGLERVWTISSLKGSN--NVAIGYDEGSVLLKVGREEPAVSMDVNGCKIIWAR  212 (381)
Q Consensus       155 ~~~~~~~~~~~~v~~v~~~~~~~--~l~~~~~dg~v~i~~~~~~~~~~~d~~~~~~~~~~  212 (381)
                       ....+..|..+|.++.|.+...  .|++||.|.++++          ||.+...++..+
T Consensus       105 -Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKf----------WD~R~~~pv~t~  153 (347)
T KOG0647|consen  105 -QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKF----------WDTRSSNPVATL  153 (347)
T ss_pred             -CeeeeeecccceeEEEEecCCCcceeEecccccceee----------cccCCCCeeeee
Confidence             4666777999999999998766  8999999999999          565555554443

>KOG0643|consensus

Probab=99.69  E-value=7.1e-16  Score=125.02  Aligned_cols=174  Identities=19%  Similarity=0.186  Sum_probs=135.8

Q ss_pred             eeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEEEeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCC
Q psy4650          73 TLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSG  152 (381)
Q Consensus        73 ~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~  152 (381)
                      .++||..+++.+.++.+|+  +|.+|+.|.++.+|-..+|+.+.++.||++.|+|+..+.+...+++|+.|.++++||+.
T Consensus         5 ~l~GHERplTqiKyN~eGD--LlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~   82 (327)
T KOG0643|consen    5 LLQGHERPLTQIKYNREGD--LLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVE   82 (327)
T ss_pred             ccccCccccceEEecCCCc--EEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcC
Confidence            4679999999999999888  89999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCeeeEEEecCCcceEEEEEcCCCCEEEEEeCC-----CeEEEEecCCCceEEEecCCCEEEEEecCceeecccccCCcc
Q psy4650         153 THRLEISLTYGLERVWTISSLKGSNNVAIGYDE-----GSVLLKVGREEPAVSMDVNGCKIIWARHSEVQQANLKTMPEV  227 (381)
Q Consensus       153 ~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d-----g~v~i~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  227 (381)
                      +|+.+..++ ....|..+.|+++|++++.+.++     +.|.+++-++.+.   +..+..++..+.....  ...    .
T Consensus        83 tGk~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~---~~~s~ep~~kI~t~~s--kit----~  152 (327)
T KOG0643|consen   83 TGKQLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSS---DIDSEEPYLKIPTPDS--KIT----S  152 (327)
T ss_pred             CCcEEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChh---hhcccCceEEecCCcc--cee----e
Confidence            999999988 44789999999999987776653     4455533221111   1113333333322211  111    1


Q ss_pred             ccccCCceEEeeehHHHHHhccCCCcChhHH
Q psy4650         228 FENITAGVVLTLSVHVTIKYRLDISDSHRSV  258 (381)
Q Consensus       228 ~~~~~dg~~l~~~~~d~~~~~~d~~~~~~~~  258 (381)
                      .-|.|-+..+..+..++.+..||.+.+...+
T Consensus       153 a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v  183 (327)
T KOG0643|consen  153 ALWGPLGETIIAGHEDGSISIYDARTGKELV  183 (327)
T ss_pred             eeecccCCEEEEecCCCcEEEEEcccCceee
Confidence            2456889999999999999999998765433

>KOG0772|consensus

Probab=99.69  E-value=4.4e-16  Score=136.85  Aligned_cols=199  Identities=12%  Similarity=0.145  Sum_probs=133.7

Q ss_pred             HHHHhhhcceeeeecCCCceEEEEEecCCeEEEecCCCcc-------cee---eEeeccccccEEEEEeeeCCCccEEEE
Q psy4650          28 IETIVRETKVDITTNKDMIEYKISYQESSRVKAFNPIQVA-------TLI---LKTLYGHEKGVNCVDYYHGGDKPYLIS   97 (381)
Q Consensus        28 ~~~~~~~~~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~-------~~~---~~~l~~h~~~v~~~~~~~~~~~~~l~s   97 (381)
                      ++....+-...+...+.+..+| ..+..-..+++|-....       -+.   +..-+||...++|.+|+|.... .+++
T Consensus       209 l~P~E~h~i~sl~ys~Tg~~iL-vvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~-~FlT  286 (641)
T KOG0772|consen  209 LQPCETHQINSLQYSVTGDQIL-VVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKE-EFLT  286 (641)
T ss_pred             cCcccccccceeeecCCCCeEE-EEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCccc-ceEE
Confidence            3333334444555565544444 34444588999864211       011   2344689999999999998664 7889


Q ss_pred             EcCCCeEEEEECCCCe-EEEEecc-----CCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCee---eEEEecCCc--c
Q psy4650          98 GADDRLVKIWDYQNKT-CVQTLEG-----HGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRL---EISLTYGLE--R  166 (381)
Q Consensus        98 ~~~d~~v~vwd~~~~~-~~~~~~~-----~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~---~~~~~~~~~--~  166 (381)
                      |+.||++|+||+...+ .+.+++.     -.-++...+|+|+|..+|+|+.||.|.+||.++...   ...-..|..  .
T Consensus       287 ~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~  366 (641)
T KOG0772|consen  287 CSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQD  366 (641)
T ss_pred             ecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCc
Confidence            9999999999997653 4445532     233688999999999999999999999999864332   222344655  8


Q ss_pred             eEEEEEcCCCCEEEEEeCCCeEEEEecCCCceEEEecCCCE-EEEEecCceeecccccCCccccccCCceEEeeehH
Q psy4650         167 VWTISSLKGSNNVAIGYDEGSVLLKVGREEPAVSMDVNGCK-IIWARHSEVQQANLKTMPEVFENITAGVVLTLSVH  242 (381)
Q Consensus       167 v~~v~~~~~~~~l~~~~~dg~v~i~~~~~~~~~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~  242 (381)
                      ++|+.|+++|++|++-+.|+++++          ||.+.-+ ++... ..  ..+..... .++|+||.+.++++..
T Consensus       367 Itsi~FS~dg~~LlSRg~D~tLKv----------WDLrq~kkpL~~~-tg--L~t~~~~t-dc~FSPd~kli~TGtS  429 (641)
T KOG0772|consen  367 ITSISFSYDGNYLLSRGFDDTLKV----------WDLRQFKKPLNVR-TG--LPTPFPGT-DCCFSPDDKLILTGTS  429 (641)
T ss_pred             eeEEEeccccchhhhccCCCceee----------eeccccccchhhh-cC--CCccCCCC-ccccCCCceEEEeccc
Confidence            999999999999999999999999          6654322 21111 10  00111111 1578899888887764

>PRK00290 dnaK molecular chaperone DnaK; Provisional

Probab=99.68  E-value=7.7e-18  Score=162.86  Aligned_cols=283  Identities=14%  Similarity=0.225  Sum_probs=177.5

Q ss_pred             chhhhHHHhhhhhcccccccCCChhhHHHHhhhcceeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeecccc---
Q psy4650           2 SRLISQAKNTIIKNKRALNTELTETDIETIVRETKVDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHE---   78 (381)
Q Consensus         2 ~~~~~~~~~t~~~~k~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~---   78 (381)
                      +++.+||.||++.+||++|++  ++.++...+..+|.+...+++... +..  +|  +.|.+.+....++..++.+.   
T Consensus        56 ~~~~~~p~~~i~~~Kr~iG~~--~~~~~~~~~~~p~~~~~~~~~~~~-~~~--~~--~~~~peel~a~iL~~lk~~ae~~  128 (627)
T PRK00290         56 RQAVTNPENTIFSIKRLMGRR--DEEVQKDIKLVPYKIVKADNGDAW-VEI--DG--KKYTPQEISAMILQKLKKDAEDY  128 (627)
T ss_pred             HhhhhCchhhHHHHHHHhCCC--chHHHHHhhcCCeEEEEcCCCceE-EEE--CC--EEEcHHHHHHHHHHHHHHHHHHH
Confidence            467889999999999999999  778999999999999987654322 222  22  45777665566665554321   


Q ss_pred             --ccEEEEEee-e----CCCccEEEEEcCCCeEEEEECCCCeEEEEeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeC
Q psy4650          79 --KGVNCVDYY-H----GGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHS  151 (381)
Q Consensus        79 --~~v~~~~~~-~----~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~  151 (381)
                        ..+..+.++ |    +.++..+..+.        ....-..+..+..+++...+.....        ..+..+.|+|+
T Consensus       129 ~g~~v~~~VItVPa~f~~~qR~a~~~Aa--------~~AGl~v~~li~EptAAAl~y~~~~--------~~~~~vlV~D~  192 (627)
T PRK00290        129 LGEKVTEAVITVPAYFNDAQRQATKDAG--------KIAGLEVLRIINEPTAAALAYGLDK--------KGDEKILVYDL  192 (627)
T ss_pred             hCCCCceEEEEECCCCCHHHHHHHHHHH--------HHcCCceEEEecchHHHHHHhhhcc--------CCCCEEEEEEC
Confidence              122222111 1    00000000000        0001122233333332221111111        13578999999


Q ss_pred             CCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCceEEEecCCCEEEEEecCceeecccccCCcccccc
Q psy4650         152 GTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKVGREEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENI  231 (381)
Q Consensus       152 ~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (381)
                      ..|+...++-.....+..        .++++                  +|                ..++|...     
T Consensus       193 GggT~dvsv~~~~~~~~~--------vla~~------------------gd----------------~~lGG~d~-----  225 (627)
T PRK00290        193 GGGTFDVSILEIGDGVFE--------VLSTN------------------GD----------------THLGGDDF-----  225 (627)
T ss_pred             CCCeEEEEEEEEeCCeEE--------EEEec------------------CC----------------CCcChHHH-----
Confidence            988765544211100000        01110                  11                11222111     


Q ss_pred             CCceEEeeehHHHHHhccCCCcChhHHHHHHHHHhhhhhhccccceeeEEEecccCC----cccccccChHHHHHHHHHH
Q psy4650         232 TAGVVLTLSVHVTIKYRLDISDSHRSVAKLRAAAETCMHVLSTLQSSNVFVESLYDG----LDFHHNVSRARFESLIGGL  307 (381)
Q Consensus       232 ~dg~~l~~~~~d~~~~~~d~~~~~~~~~~l~~~~e~ak~~lS~~~~~~i~~~~l~~g----~~~~~~itr~~fe~l~~~l  307 (381)
                      +....-++.......+..++..+++++.+|+.+||++|+.||....+.+.++.++.+    .++...+||++||+++.++
T Consensus       226 D~~l~~~~~~~~~~~~~~~~~~~~~~~~rL~~~ae~aK~~LS~~~~~~i~i~~~~~d~~g~~~~~~~itR~~fe~l~~~l  305 (627)
T PRK00290        226 DQRIIDYLADEFKKENGIDLRKDKMALQRLKEAAEKAKIELSSAQQTEINLPFITADASGPKHLEIKLTRAKFEELTEDL  305 (627)
T ss_pred             HHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeecccCCCCCeEEEEEECHHHHHHHHHHH
Confidence            011111122233445566777888999999999999999999999999999887643    6788999999999999999


Q ss_pred             hhhhhhhhHhhhccccceeeEeeccccCcceEEeecHHHHHHHHHHHHHH
Q psy4650         308 LTSFVQPCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIGGLLTS  357 (381)
Q Consensus       308 ~~~~~~~~~~~Ls~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~  357 (381)
                      +.++.++++++|..   +++....++.++++||+.++|.++++++++|++
T Consensus       306 ~~~~~~~i~~~l~~---a~~~~~~id~ViLvGGssriP~v~~~l~~~fg~  352 (627)
T PRK00290        306 VERTIEPCKQALKD---AGLSVSDIDEVILVGGSTRMPAVQELVKEFFGK  352 (627)
T ss_pred             HHHHHHHHHHHHHH---cCCChhhCcEEEEECCcCCChHHHHHHHHHhCC
Confidence            99999999999987   556677788899999999999999999999974

>KOG0104|consensus

Probab=99.68  E-value=1.1e-18  Score=160.05  Aligned_cols=298  Identities=14%  Similarity=0.161  Sum_probs=184.6

Q ss_pred             hhhhHHHhhhhhcccccccCCChhhHHHHhhhcce-eeeecCCCceEEEEEecCCeEEEecCCCccceeeEeecc-----
Q psy4650           3 RLISQAKNTIIKNKRALNTELTETDIETIVRETKV-DITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYG-----   76 (381)
Q Consensus         3 ~~~~~~~~t~~~~k~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~-----   76 (381)
                      ...+.|++++..++.++|..+.+|.+.-+.+..|+ .++..+....+.+--+.   -..|.+++.-.+.+.....     
T Consensus        77 ma~r~P~~~~~~l~~llgk~~~~~~v~ly~~~~p~~e~v~d~~rstV~F~i~d---~~~ysvEellAMil~~a~~~ae~~  153 (902)
T KOG0104|consen   77 MATRFPQSTYRQLKDLLGKSLDDPTVDLYQKRFPFFELVEDPQRSTVVFKISD---QEEYSVEELLAMILQYAKSLAEEY  153 (902)
T ss_pred             hhhcCcHHHHHHHHHHhCcccCCcHHHHHHhcCCceeecccCccceEEEEeCC---ccccCHHHHHHHHHHHHHHHHHHH
Confidence            35688999999999999999999999999997775 77777644444443332   1236655433333322211     


Q ss_pred             ccccEEEEEeeeCC-----CccEEEEEcCCCeEEEEECCCCeEEEEeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeC
Q psy4650          77 HEKGVNCVDYYHGG-----DKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHS  151 (381)
Q Consensus        77 h~~~v~~~~~~~~~-----~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~  151 (381)
                      -..+|..+.+.-..     ++..|+.++.        +.+...++.+..+.+  .++.|.-..+.-. +.....+.+||+
T Consensus       154 a~~~Ikd~ViTVP~~F~qaeR~all~Aa~--------iagl~vLqLind~~a--~Al~ygv~rRk~i-~~~~q~~i~YDM  222 (902)
T KOG0104|consen  154 AKQPIKDMVITVPPFFNQAERRALLQAAQ--------IAGLNVLQLINDGTA--VALNYGVFRRKEI-NETPQHYIFYDM  222 (902)
T ss_pred             HhcchhheEEeCCcccCHHHHHHHHHHHH--------hcCchhhhhhccchH--HHhhhhhhccccC-CCCceEEEEEec
Confidence            12345555443211     1112333331        222223333444433  2222221111111 122456789999


Q ss_pred             CCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCC----CeEEEEecCCCceEEEecCCCEEEEEecCceeecccccCCcc
Q psy4650         152 GTHRLEISLTYGLERVWTISSLKGSNNVAIGYDE----GSVLLKVGREEPAVSMDVNGCKIIWARHSEVQQANLKTMPEV  227 (381)
Q Consensus       152 ~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d----g~v~i~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  227 (381)
                      ..|....++...         .     +......    ..+++-.      +-||.                .++|....
T Consensus       223 Gs~sT~Ativsy---------~-----~v~~k~~g~~~p~i~~~g------vGfd~----------------tLGG~e~~  266 (902)
T KOG0104|consen  223 GSGSTSATIVSY---------Q-----LVKTKEQGGKQPQIQVLG------VGFDR----------------TLGGLEMT  266 (902)
T ss_pred             CCCceeEEEEEE---------E-----eeccccccCccceEEEEe------eccCC----------------ccchHHHH
Confidence            887654443211         0     0000001    1111100      00333                22222110


Q ss_pred             ccccCCceEEeeehHHHHHhccCCCcChhHHHHHHHHHhhhhhhccccceeeEEEecccCCcccccccChHHHHHHHHHH
Q psy4650         228 FENITAGVVLTLSVHVTIKYRLDISDSHRSVAKLRAAAETCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIGGL  307 (381)
Q Consensus       228 ~~~~~dg~~l~~~~~d~~~~~~d~~~~~~~~~~l~~~~e~ak~~lS~~~~~~i~~~~l~~g~~~~~~itr~~fe~l~~~l  307 (381)
                         ..-+.++.-.+.......-++..++|+|++|..+++++|.+||++..+.++++++++++||...|||++||++|.++
T Consensus       267 ---~rLr~~l~~~F~~~~k~~~dv~~nprAmaKl~keA~R~K~vLSANsea~aqIEsL~ddiDFr~kvTRe~fEelc~Dl  343 (902)
T KOG0104|consen  267 ---MRLRDHLANEFNEQHKTKKDVHTNPRAMAKLNKEAERLKQVLSANSEAFAQIESLIDDIDFRLKVTREEFEELCADL  343 (902)
T ss_pred             ---HHHHHHHHHHHHHhcCCccccccCHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHhhccccccceeHHHHHHHHHHH
Confidence               00011111112222223357888999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhhHhhhccccceeeEeeccccCcceEEeecHHHHHHHHHHHHH
Q psy4650         308 LTSFVQPCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIGGLLT  356 (381)
Q Consensus       308 ~~~~~~~~~~~Ls~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~  356 (381)
                      ..++.+|++.+|..   +.+++++|..++++||.+|.|++++.+.++++
T Consensus       344 ~~r~~~Pi~dAl~~---a~l~ldeIn~ViL~Gg~TRVP~VQe~l~k~v~  389 (902)
T KOG0104|consen  344 EERIVEPINDALKK---AQLSLDEINQVILFGGATRVPKVQETLIKAVG  389 (902)
T ss_pred             HHhhhhhHHHHHHh---cCCChhhhheeEEecCcccCchHHHHHHHHHh
Confidence            99999999999987   67899999999999999999999999888876

>KOG4283|consensus

Probab=99.68  E-value=1.2e-15  Score=125.29  Aligned_cols=157  Identities=18%  Similarity=0.147  Sum_probs=123.6

Q ss_pred             cceeee---ecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCC-ccEEEEEcCCCeEEEEECC
Q psy4650          35 TKVDIT---TNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGD-KPYLISGADDRLVKIWDYQ  110 (381)
Q Consensus        35 ~~~~i~---~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~-~~~l~s~~~d~~v~vwd~~  110 (381)
                      +.|.|.   .-|-...++.+++-|.++++||..+.......+   -.+.|.+-+++|-.. ..++|+|..|-.|++.|+.
T Consensus       100 Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~---me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~  176 (397)
T KOG4283|consen  100 HKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFK---MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIA  176 (397)
T ss_pred             ceeeeeeeEEeeecCceeecccccceEEEeecccceeeEEee---cCceeehhhcChhhhcceEEEEecCCCcEEEEecc
Confidence            444443   334335588899999999999986533332222   356788888888554 3477888899999999999


Q ss_pred             CCeEEEEeccCCCCEEEEEEecCCC-EEEEEeCCCCEEEEeCCCC-eeeEEE--------------ecCCcceEEEEEcC
Q psy4650         111 NKTCVQTLEGHGQNISAVCFHPELP-IVITGSEDGSVRVWHSGTH-RLEISL--------------TYGLERVWTISSLK  174 (381)
Q Consensus       111 ~~~~~~~~~~~~~~v~~~~~~p~~~-~l~s~~~d~~i~vwd~~~~-~~~~~~--------------~~~~~~v~~v~~~~  174 (381)
                      +|.....+.||.+.|.++.|+|... .|++|+.||.|++||++.. .+...+              ..|.+.|..++|..
T Consensus       177 SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tS  256 (397)
T KOG4283|consen  177 SGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTS  256 (397)
T ss_pred             CCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecc
Confidence            9999999999999999999999887 6789999999999999854 222222              34667899999999


Q ss_pred             CCCEEEEEeCCCeEEEEecC
Q psy4650         175 GSNNVAIGYDEGSVLLKVGR  194 (381)
Q Consensus       175 ~~~~l~~~~~dg~v~i~~~~  194 (381)
                      ++.++++++.|..+++|...
T Consensus       257 d~~~l~~~gtd~r~r~wn~~  276 (397)
T KOG4283|consen  257 DARYLASCGTDDRIRVWNME  276 (397)
T ss_pred             cchhhhhccCccceEEeecc
Confidence            99999999999999997643

>KOG1274|consensus

Probab=99.68  E-value=1.6e-15  Score=141.82  Aligned_cols=190  Identities=14%  Similarity=0.167  Sum_probs=157.8

Q ss_pred             ceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEEEeccCCCCE
Q psy4650          46 IEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNI  125 (381)
Q Consensus        46 ~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v  125 (381)
                      ..++++++.+++|..|........  ..|...+-++.+++|+-+|.  +++.||.|-.|++-+.........+++|.++|
T Consensus        66 s~~f~~~s~~~tv~~y~fps~~~~--~iL~Rftlp~r~~~v~g~g~--~iaagsdD~~vK~~~~~D~s~~~~lrgh~apV  141 (933)
T KOG1274|consen   66 SNHFLTGSEQNTVLRYKFPSGEED--TILARFTLPIRDLAVSGSGK--MIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPV  141 (933)
T ss_pred             ccceEEeeccceEEEeeCCCCCcc--ceeeeeeccceEEEEecCCc--EEEeecCceeEEEEeccccchheeecccCCce
Confidence            448999999999999987532222  22334467899999988776  89999999999999999999999999999999


Q ss_pred             EEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEecC--------CcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCc
Q psy4650         126 SAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYG--------LERVWTISSLKGSNNVAIGYDEGSVLLKVGREEP  197 (381)
Q Consensus       126 ~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~--------~~~v~~v~~~~~~~~l~~~~~dg~v~i~~~~~~~  197 (381)
                      .++.|+|.+.+||+.+.||.|++||+.++....++.+-        ...+..++|+|+|..++..+.|+.|.+       
T Consensus       142 l~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkv-------  214 (933)
T KOG1274|consen  142 LQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKV-------  214 (933)
T ss_pred             eeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEE-------
Confidence            99999999999999999999999999998877666431        345678999999999999999999999       


Q ss_pred             eEEEecCCCEEEEEecCceeecccccCCccccccCCceEEeeehHHHHHhccCCCc
Q psy4650         198 AVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSVHVTIKYRLDISD  253 (381)
Q Consensus       198 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~d~~~~~~d~~~  253 (381)
                         |+..+..+.+.+........   +. .+.|+|.|++|+.++.++.+.+|++..
T Consensus       215 ---y~r~~we~~f~Lr~~~~ss~---~~-~~~wsPnG~YiAAs~~~g~I~vWnv~t  263 (933)
T KOG1274|consen  215 ---YSRKGWELQFKLRDKLSSSK---FS-DLQWSPNGKYIAASTLDGQILVWNVDT  263 (933)
T ss_pred             ---EccCCceeheeecccccccc---eE-EEEEcCCCcEEeeeccCCcEEEEeccc
Confidence               88887777777665543333   12 267899999999999999999999875

>KOG1446|consensus

Probab=99.68  E-value=1.7e-14  Score=119.92  Aligned_cols=176  Identities=14%  Similarity=0.179  Sum_probs=127.3

Q ss_pred             EEEEEec--CCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEEEec------
Q psy4650          48 YKISYQE--SSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE------  119 (381)
Q Consensus        48 ~~~s~~~--d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~------  119 (381)
                      .++.++.  |.+|+..++.+  ...++.+.||...|.++..+|-++  .++|++.|++|++||++..++...+.      
T Consensus        70 ~~i~sStk~d~tIryLsl~d--NkylRYF~GH~~~V~sL~~sP~~d--~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi  145 (311)
T KOG1446|consen   70 TVIHSSTKEDDTIRYLSLHD--NKYLRYFPGHKKRVNSLSVSPKDD--TFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPI  145 (311)
T ss_pred             eEEEccCCCCCceEEEEeec--CceEEEcCCCCceEEEEEecCCCC--eEEecccCCeEEeeEecCCCCceEEecCCCcc
Confidence            3444444  77999998874  678899999999999999999876  79999999999999998533222111      


Q ss_pred             ---------------------------------------cCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEE
Q psy4650         120 ---------------------------------------GHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISL  160 (381)
Q Consensus       120 ---------------------------------------~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~  160 (381)
                                                             +.......+.|+|+|+.++-+...+.+.+.|.-+|....++
T Consensus       146 ~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tf  225 (311)
T KOG1446|consen  146 AAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTF  225 (311)
T ss_pred             eeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeE
Confidence                                                   12334567888888888888888888888888888888877


Q ss_pred             ecCCcce---EEEEEcCCCCEEEEEeCCCeEEEEecCCCceEEEecCCCEEEEEecCceeecccccCCccccccCCceEE
Q psy4650         161 TYGLERV---WTISSLKGSNNVAIGYDEGSVLLKVGREEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGVVL  237 (381)
Q Consensus       161 ~~~~~~v---~~v~~~~~~~~l~~~~~dg~v~i~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l  237 (381)
                      .++...-   ...+|+|+++++.+|+.||.+.+          |+.++|..+-.....    +...... ..|+|.-..+
T Consensus       226 s~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~v----------w~~~tg~~v~~~~~~----~~~~~~~-~~fnP~~~mf  290 (311)
T KOG1446|consen  226 SGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHV----------WNLETGKKVAVLRGP----NGGPVSC-VRFNPRYAMF  290 (311)
T ss_pred             eeccCCCCcceeEEECCCCcEEEEecCCCcEEE----------EEcCCCcEeeEecCC----CCCCccc-cccCCceeee
Confidence            7654432   57889999999999999999999          777777766554442    1111111 3456665555


Q ss_pred             eeehH
Q psy4650         238 TLSVH  242 (381)
Q Consensus       238 ~~~~~  242 (381)
                      ++++.
T Consensus       291 ~sa~s  295 (311)
T KOG1446|consen  291 VSASS  295 (311)
T ss_pred             eecCc
Confidence            55443

>KOG0305|consensus

Probab=99.68  E-value=2e-15  Score=136.31  Aligned_cols=154  Identities=12%  Similarity=0.216  Sum_probs=132.5

Q ss_pred             hcceeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEc--CCCeEEEEECCC
Q psy4650          34 ETKVDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGA--DDRLVKIWDYQN  111 (381)
Q Consensus        34 ~~~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~--~d~~v~vwd~~~  111 (381)
                      +..|.+...++ ..++++|+.|+.+.|||..  ...++.++..|...|.+++|+|-.. .+||+|+  .|+.|++||..+
T Consensus       302 qeVCgLkws~d-~~~lASGgnDN~~~Iwd~~--~~~p~~~~~~H~aAVKA~awcP~q~-~lLAsGGGs~D~~i~fwn~~~  377 (484)
T KOG0305|consen  302 QEVCGLKWSPD-GNQLASGGNDNVVFIWDGL--SPEPKFTFTEHTAAVKALAWCPWQS-GLLATGGGSADRCIKFWNTNT  377 (484)
T ss_pred             ceeeeeEECCC-CCeeccCCCccceEeccCC--CccccEEEeccceeeeEeeeCCCcc-CceEEcCCCcccEEEEEEcCC
Confidence            44455666666 6699999999999999984  4566788899999999999999765 3888875  599999999999


Q ss_pred             CeEEEEeccCCCCEEEEEEecCCCEEEEE--eCCCCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCCCeEE
Q psy4650         112 KTCVQTLEGHGQNISAVCFHPELPIVITG--SEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVL  189 (381)
Q Consensus       112 ~~~~~~~~~~~~~v~~~~~~p~~~~l~s~--~~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~  189 (381)
                      +..+..+. ....|..+.|++..+.++++  -.++.|.||++.+.+.+..+.+|..+|..++++|+|..+++|+.|.+++
T Consensus       378 g~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlr  456 (484)
T KOG0305|consen  378 GARIDSVD-TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLR  456 (484)
T ss_pred             CcEecccc-cCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEE
Confidence            99888887 45789999999988755554  3377899999999999999999999999999999999999999999999


Q ss_pred             EEe
Q psy4650         190 LKV  192 (381)
Q Consensus       190 i~~  192 (381)
                      +|.
T Consensus       457 fw~  459 (484)
T KOG0305|consen  457 FWN  459 (484)
T ss_pred             ecc
Confidence            954

>KOG0646|consensus

Probab=99.68  E-value=2.4e-15  Score=130.79  Aligned_cols=154  Identities=17%  Similarity=0.175  Sum_probs=131.1

Q ss_pred             eeecCCCceEEEEEecCCeEEEecCC-------CccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCC
Q psy4650          39 ITTNKDMIEYKISYQESSRVKAFNPI-------QVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQN  111 (381)
Q Consensus        39 i~~~~~~~~~~~s~~~d~~v~i~~~~-------~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~  111 (381)
                      +.+..+ +.++++|+.||.|.+|.+.       +....+++.+.+|+-+|+++...+.|...+++|+|.|.++++||+..
T Consensus       129 L~fs~d-gs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~  207 (476)
T KOG0646|consen  129 LKFSDD-GSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSL  207 (476)
T ss_pred             EEEeCC-CcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEecc
Confidence            445555 6799999999999999762       22556788999999999999999887777999999999999999999


Q ss_pred             CeEEEEeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCC----------------CeeeEEEecCCc--ceEEEEEc
Q psy4650         112 KTCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGT----------------HRLEISLTYGLE--RVWTISSL  173 (381)
Q Consensus       112 ~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~----------------~~~~~~~~~~~~--~v~~v~~~  173 (381)
                      +..+.++. ....+.+++..|.+..+..|+.+|.|.+.++..                +.....+.+|.+  .|+|++.+
T Consensus       208 g~LLlti~-fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais  286 (476)
T KOG0646|consen  208 GVLLLTIT-FPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAIS  286 (476)
T ss_pred             ceeeEEEe-cCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEe
Confidence            99888776 346789999999999999999999999887653                234456778887  99999999


Q ss_pred             CCCCEEEEEeCCCeEEEEecC
Q psy4650         174 KGSNNVAIGYDEGSVLLKVGR  194 (381)
Q Consensus       174 ~~~~~l~~~~~dg~v~i~~~~  194 (381)
                      -+|..|++|+.||.+.+|+..
T Consensus       287 ~DgtlLlSGd~dg~VcvWdi~  307 (476)
T KOG0646|consen  287 TDGTLLLSGDEDGKVCVWDIY  307 (476)
T ss_pred             cCccEEEeeCCCCCEEEEecc
Confidence            999999999999999995533

>KOG1036|consensus

Probab=99.67  E-value=3e-15  Score=123.78  Aligned_cols=202  Identities=15%  Similarity=0.226  Sum_probs=143.7

Q ss_pred             HHHHhhhcceeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEE
Q psy4650          28 IETIVRETKVDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIW  107 (381)
Q Consensus        28 ~~~~~~~~~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vw  107 (381)
                      +++-++....++.+.+. ...|+.++-||++++|+....   .+...-.|..++.+++|.++.   .+++|+.||.|+.+
T Consensus         8 l~npP~d~IS~v~f~~~-~~~LLvssWDgslrlYdv~~~---~l~~~~~~~~plL~c~F~d~~---~~~~G~~dg~vr~~   80 (323)
T KOG1036|consen    8 LENPPEDGISSVKFSPS-SSDLLVSSWDGSLRLYDVPAN---SLKLKFKHGAPLLDCAFADES---TIVTGGLDGQVRRY   80 (323)
T ss_pred             cCCCChhceeeEEEcCc-CCcEEEEeccCcEEEEeccch---hhhhheecCCceeeeeccCCc---eEEEeccCceEEEE
Confidence            34444555566777754 445666679999999998642   333444689999999998744   58999999999999


Q ss_pred             ECCCCeEEEEeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCCCe
Q psy4650         108 DYQNKTCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGS  187 (381)
Q Consensus       108 d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~  187 (381)
                      |+.++.. ..+..|..+|.|+.+.+....+++||+|++|++||.+......++... ..|.++..  .|..|++|+.+..
T Consensus        81 Dln~~~~-~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~-kkVy~~~v--~g~~LvVg~~~r~  156 (323)
T KOG1036|consen   81 DLNTGNE-DQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQG-KKVYCMDV--SGNRLVVGTSDRK  156 (323)
T ss_pred             EecCCcc-eeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccC-ceEEEEec--cCCEEEEeecCce
Confidence            9998874 445669999999999998889999999999999999976555555433 36776655  4678899999999


Q ss_pred             EEEEecCCCceEEEecCCCEEEEEecCceeecccccCCccccccCCceEEeeehHHHHHhccCCCcC
Q psy4650         188 VLLKVGREEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSVHVTIKYRLDISDS  254 (381)
Q Consensus       188 v~i~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~d~~~~~~d~~~~  254 (381)
                      +.+          ||.++.........    ..+.-..+.++..|.+.-.++++-++++....+...
T Consensus       157 v~i----------yDLRn~~~~~q~re----S~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s  209 (323)
T KOG1036|consen  157 VLI----------YDLRNLDEPFQRRE----SSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDS  209 (323)
T ss_pred             EEE----------EEcccccchhhhcc----ccceeEEEEEEEecCCCceEEEeecceEEEEccCCc
Confidence            988          77765543332211    122211122455677777777777777776555544

>KOG1274|consensus

Probab=99.66  E-value=2.8e-15  Score=140.23  Aligned_cols=156  Identities=19%  Similarity=0.230  Sum_probs=129.4

Q ss_pred             cceeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeE
Q psy4650          35 TKVDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTC  114 (381)
Q Consensus        35 ~~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~  114 (381)
                      +|...+.-...+++++.|++|-.|++-+..+  ......+++|.++|.++.|+|.++  +||+.+.||.|++||+.++..
T Consensus        97 lp~r~~~v~g~g~~iaagsdD~~vK~~~~~D--~s~~~~lrgh~apVl~l~~~p~~~--fLAvss~dG~v~iw~~~~~~~  172 (933)
T KOG1274|consen   97 LPIRDLAVSGSGKMIAAGSDDTAVKLLNLDD--SSQEKVLRGHDAPVLQLSYDPKGN--FLAVSSCDGKVQIWDLQDGIL  172 (933)
T ss_pred             ccceEEEEecCCcEEEeecCceeEEEEeccc--cchheeecccCCceeeeeEcCCCC--EEEEEecCceEEEEEcccchh
Confidence            3444444444577999999999999999875  334578899999999999999777  899999999999999999876


Q ss_pred             EEEeccC--------CCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEec--CCcceEEEEEcCCCCEEEEEeC
Q psy4650         115 VQTLEGH--------GQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTY--GLERVWTISSLKGSNNVAIGYD  184 (381)
Q Consensus       115 ~~~~~~~--------~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~--~~~~v~~v~~~~~~~~l~~~~~  184 (381)
                      ..++.+-        ...+..++|+|++..++..+.|+.|++|+..++.....+..  ++..+..+.|+|+|+++|+++.
T Consensus       173 ~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~  252 (933)
T KOG1274|consen  173 SKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTL  252 (933)
T ss_pred             hhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeecc
Confidence            6655431        34567899999999999899999999999999988877754  4555899999999999999999


Q ss_pred             CCeEEEEecC
Q psy4650         185 EGSVLLKVGR  194 (381)
Q Consensus       185 dg~v~i~~~~  194 (381)
                      ||.|.+|+..
T Consensus       253 ~g~I~vWnv~  262 (933)
T KOG1274|consen  253 DGQILVWNVD  262 (933)
T ss_pred             CCcEEEEecc
Confidence            9999997744

>KOG4328|consensus

Probab=99.66  E-value=1.9e-15  Score=131.05  Aligned_cols=169  Identities=12%  Similarity=0.123  Sum_probs=128.3

Q ss_pred             hhhHHHHhhhcceeeeecCCCc-eEEEEEecCCeEEEecCC--CccceeeEeeccccccEEEEEeeeCCCccEEEEEcCC
Q psy4650          25 ETDIETIVRETKVDITTNKDMI-EYKISYQESSRVKAFNPI--QVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADD  101 (381)
Q Consensus        25 ~~~~~~~~~~~~~~i~~~~~~~-~~~~s~~~d~~v~i~~~~--~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d  101 (381)
                      .+.+-+....-...+.++|... .++++|...|.|-+||..  +....-+.....|.++|.++.|+|.... .+.+.|.|
T Consensus       178 ~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s-~i~ssSyD  256 (498)
T KOG4328|consen  178 ILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTS-QIYSSSYD  256 (498)
T ss_pred             ecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChh-heeeeccC
Confidence            3333344445556677888666 799999999999999994  2222334556689999999999997664 78899999


Q ss_pred             CeEEEEECCCCe---------------------------------------------EEEEeccCCCCEEEEEEecCCC-
Q psy4650         102 RLVKIWDYQNKT---------------------------------------------CVQTLEGHGQNISAVCFHPELP-  135 (381)
Q Consensus       102 ~~v~vwd~~~~~---------------------------------------------~~~~~~~~~~~v~~~~~~p~~~-  135 (381)
                      |++++-|++++.                                             ....+.-|...|..++++|..+ 
T Consensus       257 GtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~  336 (498)
T KOG4328|consen  257 GTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPW  336 (498)
T ss_pred             ceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCch
Confidence            999999986520                                             0111223666899999999776 


Q ss_pred             EEEEEeCCCCEEEEeCCCCee----eEEEecCCcceEEEEEcCCCCEEEEEeCCCeEEEEecC
Q psy4650         136 IVITGSEDGSVRVWHSGTHRL----EISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKVGR  194 (381)
Q Consensus       136 ~l~s~~~d~~i~vwd~~~~~~----~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~~~  194 (381)
                      +++++|.|++.+|||++.-..    ......|.-.|.++.|+|.+..|++.+.|..|++|++.
T Consensus       337 ~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss  399 (498)
T KOG4328|consen  337 FLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSS  399 (498)
T ss_pred             heeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecc
Confidence            789999999999999984322    23344588999999999998889999999999997753

>TIGR02350 prok_dnaK chaperone protein DnaK

Probab=99.66  E-value=2.1e-17  Score=159.37  Aligned_cols=120  Identities=18%  Similarity=0.255  Sum_probs=101.8

Q ss_pred             HHHHhccCCCcChhHHHHHHHHHhhhhhhccccceeeEEEecccC----CcccccccChHHHHHHHHHHhhhhhhhhHhh
Q psy4650         243 VTIKYRLDISDSHRSVAKLRAAAETCMHVLSTLQSSNVFVESLYD----GLDFHHNVSRARFESLIGGLLTSFVQPCMHV  318 (381)
Q Consensus       243 d~~~~~~d~~~~~~~~~~l~~~~e~ak~~lS~~~~~~i~~~~l~~----g~~~~~~itr~~fe~l~~~l~~~~~~~~~~~  318 (381)
                      ....+..++..+++++.+|+.+||++|+.||...++.+.++.++.    +.++...+||++||+++.+++.++.++++++
T Consensus       235 ~~~~~~~~~~~~~~~~~~L~~~ae~aK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itr~~fe~l~~~l~~~~~~~i~~~  314 (595)
T TIGR02350       235 FKKEEGIDLSKDKMALQRLKEAAEKAKIELSSVLSTEINLPFITADASGPKHLEMTLTRAKFEELTADLVERTKEPVRQA  314 (595)
T ss_pred             HHHhhCCCcccCHHHHHHHHHHHHHHHHHcCCCCceEEEeeecccCCCCCeeEEEEEeHHHHHHHHHHHHHHHHHHHHHH
Confidence            334455677778899999999999999999999999999987764    3578899999999999999999999999999


Q ss_pred             hccccceeeEeeccccCcceEEeecHHHHHHHHHHHHHH----hHHHHHHH
Q psy4650         319 LSTLQSSNVFVESLYDGLDFHHNVSRARFESLIGGLLTS----FVQPIEDV  365 (381)
Q Consensus       319 Ls~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~----~~~~~~~~  365 (381)
                      |..   +.+..+.++.++++||+.++|.++++++++|++    .++|-+.+
T Consensus       315 l~~---a~~~~~~i~~V~LvGGssriP~v~~~i~~~f~~~~~~~~~pdeav  362 (595)
T TIGR02350       315 LKD---AGLSASDIDEVILVGGSTRIPAVQELVKDFFGKEPNKSVNPDEVV  362 (595)
T ss_pred             HHH---cCCCHhHCcEEEEECCcccChHHHHHHHHHhCCcccCCcCcHHHH
Confidence            987   456667788899999999999999999999973    44554433

Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.

>KOG0321|consensus

Probab=99.65  E-value=1.9e-15  Score=136.00  Aligned_cols=241  Identities=12%  Similarity=0.103  Sum_probs=157.1

Q ss_pred             cceeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCe-
Q psy4650          35 TKVDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKT-  113 (381)
Q Consensus        35 ~~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~-  113 (381)
                      ..+++.+-+ +...|++++.|.+++.||+.+....-...+.||++.|.+++|.|... ..|++|+.||.+.|||++-.. 
T Consensus       102 AifDl~wap-ge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~-~vF~tGgRDg~illWD~R~n~~  179 (720)
T KOG0321|consen  102 AIFDLKWAP-GESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNP-AVFCTGGRDGEILLWDCRCNGV  179 (720)
T ss_pred             eeEeeccCC-CceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCC-cceeeccCCCcEEEEEEeccch
Confidence            345666777 57789999999999999997533332334789999999999999765 489999999999999985321 


Q ss_pred             --------------------------EEEEeccCCCCEEE---EEEecCCCEEEEEeC-CCCEEEEeCCCCeeeEE----
Q psy4650         114 --------------------------CVQTLEGHGQNISA---VCFHPELPIVITGSE-DGSVRVWHSGTHRLEIS----  159 (381)
Q Consensus       114 --------------------------~~~~~~~~~~~v~~---~~~~p~~~~l~s~~~-d~~i~vwd~~~~~~~~~----  159 (381)
                                                .+...+.|...+.+   +.+..|...|+++|. |+.|+|||++.......    
T Consensus       180 d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~  259 (720)
T KOG0321|consen  180 DALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPR  259 (720)
T ss_pred             hhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCC
Confidence                                      11122334444555   556668888998887 99999999986543322    


Q ss_pred             ----EecC---CcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCceEEEecCCCEEEEEecCceeecccccCCccccccC
Q psy4650         160 ----LTYG---LERVWTISSLKGSNNVAIGYDEGSVLLKVGREEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENIT  232 (381)
Q Consensus       160 ----~~~~---~~~v~~v~~~~~~~~l~~~~~dg~v~i~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (381)
                          +..+   ...+.++.....|.+|.+.|.|+.|++|+-..        .+..++......... .+.. .  -..+|
T Consensus       260 ~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s--------~s~sP~~~~sg~~~~-sf~v-k--s~lSp  327 (720)
T KOG0321|consen  260 GSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRS--------LSISPVAEFSGKLNS-SFYV-K--SELSP  327 (720)
T ss_pred             cccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccc--------cCcCchhhccCcccc-eeee-e--eecCC
Confidence                2223   33577788888889988888899999954221        111111111111000 0000 0  14579


Q ss_pred             CceEEeeehHHHHHhccCCCcChhHHHHHHHHHh----------hhhhhccccceeeEEEecccCCc
Q psy4650         233 AGVVLTLSVHVTIKYRLDISDSHRSVAKLRAAAE----------TCMHVLSTLQSSNVFVESLYDGL  289 (381)
Q Consensus       233 dg~~l~~~~~d~~~~~~d~~~~~~~~~~l~~~~e----------~ak~~lS~~~~~~i~~~~l~~g~  289 (381)
                      |+..+++++.+...+.|.+..-......+..+.-          ..-.++..+.+....++.+++|.
T Consensus       328 d~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~l  394 (720)
T KOG0321|consen  328 DDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNGL  394 (720)
T ss_pred             CCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCch
Confidence            9999999999999999988765544444443321          11223344556666777766553

>KOG1539|consensus

Probab=99.65  E-value=1.8e-15  Score=140.03  Aligned_cols=183  Identities=15%  Similarity=0.150  Sum_probs=151.5

Q ss_pred             ceEEEEEecCCeEEEecCCCccceeeEee---ccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEEEeccCC
Q psy4650          46 IEYKISYQESSRVKAFNPIQVATLILKTL---YGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHG  122 (381)
Q Consensus        46 ~~~~~s~~~d~~v~i~~~~~~~~~~~~~l---~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~  122 (381)
                      +++.+-|...|+|-+|++.  ++.....+   +.|.++|++++...  .++.+++++.+|.+++||......+..++ -.
T Consensus       460 GNF~~IG~S~G~Id~fNmQ--SGi~r~sf~~~~ah~~~V~gla~D~--~n~~~vsa~~~Gilkfw~f~~k~l~~~l~-l~  534 (910)
T KOG1539|consen  460 GNFVFIGYSKGTIDRFNMQ--SGIHRKSFGDSPAHKGEVTGLAVDG--TNRLLVSAGADGILKFWDFKKKVLKKSLR-LG  534 (910)
T ss_pred             CceEEEeccCCeEEEEEcc--cCeeecccccCccccCceeEEEecC--CCceEEEccCcceEEEEecCCcceeeeec-cC
Confidence            4588889999999999985  33333445   58999999999854  55589999999999999999888777776 34


Q ss_pred             CCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCceEEEe
Q psy4650         123 QNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKVGREEPAVSMD  202 (381)
Q Consensus       123 ~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~~~~~~~~~~d  202 (381)
                      ..+.++.++.....++.+..|-.|+++|..+.+.++.+.+|.+.+++++|+|+|+++++++.|++|++          ||
T Consensus       535 ~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~----------wD  604 (910)
T KOG1539|consen  535 SSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRT----------WD  604 (910)
T ss_pred             CCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEE----------Ee
Confidence            56788999998889999999999999999999999999999999999999999999999999999999          88


Q ss_pred             cCCCEEEEEecCceeecccccCCccccccCCceEEeeehHH-HHHhccC
Q psy4650         203 VNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSVHV-TIKYRLD  250 (381)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~d-~~~~~~d  250 (381)
                      .-++.++-.+..+..-.       .+.++|.|.+|++...+ ..++.|.
T Consensus       605 lpt~~lID~~~vd~~~~-------sls~SPngD~LAT~Hvd~~gIylWs  646 (910)
T KOG1539|consen  605 LPTGTLIDGLLVDSPCT-------SLSFSPNGDFLATVHVDQNGIYLWS  646 (910)
T ss_pred             ccCcceeeeEecCCcce-------eeEECCCCCEEEEEEecCceEEEEE
Confidence            88888776554332222       14678999999998877 4556664

>KOG0641|consensus

Probab=99.65  E-value=4.1e-14  Score=112.23  Aligned_cols=144  Identities=17%  Similarity=0.248  Sum_probs=119.3

Q ss_pred             CCceEEEEEec-CCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEEEecc--
Q psy4650          44 DMIEYKISYQE-SSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEG--  120 (381)
Q Consensus        44 ~~~~~~~s~~~-d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~--  120 (381)
                      .++.++++++. |-.|++-|-.  ..+.++.+.||++-|.++.-- ++-  .+++|+.|.+|++||++-..++.++..  
T Consensus       150 s~~~il~s~gagdc~iy~tdc~--~g~~~~a~sghtghilalysw-n~~--m~~sgsqdktirfwdlrv~~~v~~l~~~~  224 (350)
T KOG0641|consen  150 SGGAILASAGAGDCKIYITDCG--RGQGFHALSGHTGHILALYSW-NGA--MFASGSQDKTIRFWDLRVNSCVNTLDNDF  224 (350)
T ss_pred             cCceEEEecCCCcceEEEeecC--CCCcceeecCCcccEEEEEEe-cCc--EEEccCCCceEEEEeeeccceeeeccCcc
Confidence            34567776654 3355555543  466788999999999998422 223  799999999999999998888777642  


Q ss_pred             C-----CCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCCCeEEEEe
Q psy4650         121 H-----GQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKV  192 (381)
Q Consensus       121 ~-----~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~  192 (381)
                      |     ...|.+++..|.|++|++|-.|....+||++.++.++.+..|+..|.++.|+|...++.+|+.|..|++.+
T Consensus       225 ~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltd  301 (350)
T KOG0641|consen  225 HDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTD  301 (350)
T ss_pred             cCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEee
Confidence            2     24689999999999999999999999999999999999999999999999999999999999999999944

>CHL00094 dnaK heat shock protein 70

Probab=99.64  E-value=4e-17  Score=157.44  Aligned_cols=293  Identities=17%  Similarity=0.206  Sum_probs=178.2

Q ss_pred             chhhhHHHhhhhhcccccccCCChhhHHHHhhhcceeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeecccc---
Q psy4650           2 SRLISQAKNTIIKNKRALNTELTETDIETIVRETKVDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHE---   78 (381)
Q Consensus         2 ~~~~~~~~~t~~~~k~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~---   78 (381)
                      +++.+||.||++.+||++|+.+++  ++...++.+|.+...+++. +.+.....+  +.|.+.+.....+..++...   
T Consensus        56 ~~~~~~p~~ti~~~KrliG~~~~~--~~~~~~~~~~~v~~~~~g~-i~~~~~~~~--~~~s~eei~a~iL~~l~~~ae~~  130 (621)
T CHL00094         56 RQAVINPENTFYSVKRFIGRKFSE--ISEEAKQVSYKVKTDSNGN-IKIECPALN--KDFSPEEISAQVLRKLVEDASKY  130 (621)
T ss_pred             HhHHhCccceehhhHHhcCCChHH--HHhhhhcCCeEEEECCCCC-EEEEEecCC--eEEcHHHHHHHHHHHHHHHHHHH
Confidence            467789999999999999999975  5666778899998765433 444333333  35666655555555444211   


Q ss_pred             --ccEEEEEe-ee----CCCccEEEEEcCCCeEEEEECCCCeEEEEeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeC
Q psy4650          79 --KGVNCVDY-YH----GGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHS  151 (381)
Q Consensus        79 --~~v~~~~~-~~----~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~  151 (381)
                        ..+..+.. .|    +.++..+..+.        ....-..+..+..+.+...+.....        ..+..+.|+|+
T Consensus       131 lg~~v~~~VItVPa~f~~~qR~a~~~Aa--------~~AGl~v~~li~EptAAAlay~~~~--------~~~~~vlV~Dl  194 (621)
T CHL00094        131 LGETVTQAVITVPAYFNDSQRQATKDAG--------KIAGLEVLRIINEPTAASLAYGLDK--------KNNETILVFDL  194 (621)
T ss_pred             hCCCCCeEEEEECCCCCHHHHHHHHHHH--------HHcCCceEEEeccHHHHHHHhcccc--------CCCCEEEEEEc
Confidence              11222111 11    10100000000        0001122223333322211111111        13567889999


Q ss_pred             CCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCceEEEecCCCEEEEEecCceeecccccCCcccccc
Q psy4650         152 GTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKVGREEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENI  231 (381)
Q Consensus       152 ~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (381)
                      ..|+...++-.....+..        .++++                  .|                ..++|...     
T Consensus       195 GgGT~DvSv~~~~~~~~~--------vla~~------------------gd----------------~~lGG~d~-----  227 (621)
T CHL00094        195 GGGTFDVSILEVGDGVFE--------VLSTS------------------GD----------------THLGGDDF-----  227 (621)
T ss_pred             CCCeEEEEEEEEcCCEEE--------EEEEe------------------cC----------------CCcChHHH-----
Confidence            988765544211111000        01111                  11                12222221     


Q ss_pred             CCceEEeeehHHHHHhccCCCcChhHHHHHHHHHhhhhhhccccceeeEEEecccC----CcccccccChHHHHHHHHHH
Q psy4650         232 TAGVVLTLSVHVTIKYRLDISDSHRSVAKLRAAAETCMHVLSTLQSSNVFVESLYD----GLDFHHNVSRARFESLIGGL  307 (381)
Q Consensus       232 ~dg~~l~~~~~d~~~~~~d~~~~~~~~~~l~~~~e~ak~~lS~~~~~~i~~~~l~~----g~~~~~~itr~~fe~l~~~l  307 (381)
                      +....-++.......+..++..+++++.+|+.+||++|+.||...++.+.++.++.    +.++...++|++||+++.++
T Consensus       228 D~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~aE~aK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itR~~fe~l~~~l  307 (621)
T CHL00094        228 DKKIVNWLIKEFKKKEGIDLSKDRQALQRLTEAAEKAKIELSNLTQTEINLPFITATQTGPKHIEKTLTRAKFEELCSDL  307 (621)
T ss_pred             HHHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHHHHhcCCCCceEEEEeecccCCCCCeeEEEEEcHHHHHHHHHHH
Confidence            11111112233344556677778889999999999999999999999999987754    35788899999999999999


Q ss_pred             hhhhhhhhHhhhccccceeeEeeccccCcceEEeecHHHHHHHHHHHHHH----hHHHHHHH
Q psy4650         308 LTSFVQPCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIGGLLTS----FVQPIEDV  365 (381)
Q Consensus       308 ~~~~~~~~~~~Ls~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~----~~~~~~~~  365 (381)
                      +.++..+++++|..   +.+....++.++++||+.++|.++++++++|++    .++|-+.+
T Consensus       308 ~~~~~~~i~~~L~~---a~~~~~~i~~ViLvGGssriP~v~~~l~~~fg~~~~~~~~pdeav  366 (621)
T CHL00094        308 INRCRIPVENALKD---AKLDKSDIDEVVLVGGSTRIPAIQELVKKLLGKKPNQSVNPDEVV  366 (621)
T ss_pred             HHHHHHHHHHHHHH---cCCChhhCcEEEEECCccCChHHHHHHHHHhCCCcCcCCCchhHH
Confidence            99999999999987   566677888999999999999999999999974    44554443

>KOG0288|consensus

Probab=99.64  E-value=1.6e-16  Score=135.97  Aligned_cols=197  Identities=15%  Similarity=0.223  Sum_probs=155.6

Q ss_pred             cceeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeE
Q psy4650          35 TKVDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTC  114 (381)
Q Consensus        35 ~~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~  114 (381)
                      ...++.+.++ ...+++|+.|..|++|+..........+|.|-.++|+++.|.+++.  .+++++.|+.+++|++...+.
T Consensus       177 ev~~v~~l~~-sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~--~~iAas~d~~~r~Wnvd~~r~  253 (459)
T KOG0288|consen  177 EVHDVEFLRN-SDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNK--HVIAASNDKNLRLWNVDSLRL  253 (459)
T ss_pred             ccceeEEccC-cchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCc--eEEeecCCCceeeeeccchhh
Confidence            3456666655 4579999999999999987655557788999999999999988766  788999999999999999999


Q ss_pred             EEEeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCCCeEEEEecC
Q psy4650         115 VQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKVGR  194 (381)
Q Consensus       115 ~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~~~  194 (381)
                      ..++.||++.|+++.|......+++|+.|.++++||+..+.+..++.. .+.+..|+..  +..+++|..|+.+++    
T Consensus       254 ~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~-~S~cnDI~~~--~~~~~SgH~DkkvRf----  326 (459)
T KOG0288|consen  254 RHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLP-GSQCNDIVCS--ISDVISGHFDKKVRF----  326 (459)
T ss_pred             hhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccc-cccccceEec--ceeeeecccccceEE----
Confidence            999999999999999988777799999999999999999888776643 3455556655  557888999999999    


Q ss_pred             CCceEEEecCCCEEEEEecCceeecccccCCccccccCCceEEeeehHHHHHhccCCCcC
Q psy4650         195 EEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSVHVTIKYRLDISDS  254 (381)
Q Consensus       195 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~d~~~~~~d~~~~  254 (381)
                            ||.+++.+...+.......+       +..+++|..+.+.+.|......|++..
T Consensus       327 ------wD~Rs~~~~~sv~~gg~vtS-------l~ls~~g~~lLsssRDdtl~viDlRt~  373 (459)
T KOG0288|consen  327 ------WDIRSADKTRSVPLGGRVTS-------LDLSMDGLELLSSSRDDTLKVIDLRTK  373 (459)
T ss_pred             ------EeccCCceeeEeecCcceee-------EeeccCCeEEeeecCCCceeeeecccc
Confidence                  66666665555443322222       334578888888888888877777654

>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]

Probab=99.64  E-value=7.6e-18  Score=159.37  Aligned_cols=124  Identities=21%  Similarity=0.281  Sum_probs=109.3

Q ss_pred             eehHHHHHhccCCCcChhHHHHHHHHHhhhhhhccccceeeEEEecccCCcccccccChHHHHHHHHHHhhhhhhhhHhh
Q psy4650         239 LSVHVTIKYRLDISDSHRSVAKLRAAAETCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIGGLLTSFVQPCMHV  318 (381)
Q Consensus       239 ~~~~d~~~~~~d~~~~~~~~~~l~~~~e~ak~~lS~~~~~~i~~~~l~~g~~~~~~itr~~fe~l~~~l~~~~~~~~~~~  318 (381)
                      ....+..++..|+..++..+++|+.+|+++|..||+..++.+.++++..+.++...++|++||.++.+++.++.+++..+
T Consensus       220 ~~~~f~~~~~~d~~~~~~~~~rL~~~ae~aK~~LS~~~~~~i~~~~~~~~~~~~~~ltR~~~E~l~~dll~r~~~~~~~a  299 (579)
T COG0443         220 LVMEFKGKGGIDLRSDKAALQRLREAAEKAKIELSSATQTSINLPSIGGDIDLLKELTRAKFEELILDLLERTIEPVEQA  299 (579)
T ss_pred             HHHHhhccCCccccccHHHHHHHHHHHHHHHHHcccccccccchhhccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            44455556668889999999999999999999999999999999988888889999999999999999999999999999


Q ss_pred             hccccceeeEeeccccCcceEEeecHHHHHHHHHHHHH----HhHHHHHHH
Q psy4650         319 LSTLQSSNVFVESLYDGLDFHHNVSRARFESLIGGLLT----SFVQPIEDV  365 (381)
Q Consensus       319 Ls~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~----~~~~~~~~~  365 (381)
                      |.+   +.++..++..++++||++++|.+++.++++|+    +.++|-+.+
T Consensus       300 l~~---a~l~~~~I~~VilvGGstriP~V~~~v~~~f~~~~~~~inpdeav  347 (579)
T COG0443         300 LKD---AGLEKSDIDLVILVGGSTRIPAVQELVKEFFGKEPEKSINPDEAV  347 (579)
T ss_pred             HHH---cCCChhhCceEEEccceeccHHHHHHHHHHhCccccccCCccHHH
Confidence            988   56667788888999999999999999999998    455554443

>KOG1034|consensus

Probab=99.63  E-value=1.1e-14  Score=121.43  Aligned_cols=165  Identities=19%  Similarity=0.303  Sum_probs=131.5

Q ss_pred             hHHHHhhhcceeeeecC----CCceEEEEEecCCeEEEecCCCc-cceeeEeec--cccccEEEEEeeeCCC--ccEEEE
Q psy4650          27 DIETIVRETKVDITTNK----DMIEYKISYQESSRVKAFNPIQV-ATLILKTLY--GHEKGVNCVDYYHGGD--KPYLIS   97 (381)
Q Consensus        27 ~~~~~~~~~~~~i~~~~----~~~~~~~s~~~d~~v~i~~~~~~-~~~~~~~l~--~h~~~v~~~~~~~~~~--~~~l~s   97 (381)
                      .+++..+.-.|.++++.    +...++++++. ..+.+|..... ....++.+.  .|.+....++|+.+..  .+++|.
T Consensus        32 ~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~  110 (385)
T KOG1034|consen   32 HLKEDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAA  110 (385)
T ss_pred             ehhccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEe
Confidence            34444444455565542    33446666655 47888876432 223444443  3778889999987544  468999


Q ss_pred             EcCCCeEEEEECCCCeEEEEeccCCCCEEEEEEecCCC-EEEEEeCCCCEEEEeCCCCeeeEEEe---cCCcceEEEEEc
Q psy4650          98 GADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELP-IVITGSEDGSVRVWHSGTHRLEISLT---YGLERVWTISSL  173 (381)
Q Consensus        98 ~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~p~~~-~l~s~~~d~~i~vwd~~~~~~~~~~~---~~~~~v~~v~~~  173 (381)
                      |+.-|.|+|.|+.++++...+.+|.+.|..+.++|..+ ++++++.|..|++|++.+..++..+-   +|.+.|.++.|+
T Consensus       111 ~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~  190 (385)
T KOG1034|consen  111 GGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFS  190 (385)
T ss_pred             ecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEc
Confidence            99999999999999999999999999999999999775 88899999999999999999988874   599999999999


Q ss_pred             CCCCEEEEEeCCCeEEEEe
Q psy4650         174 KGSNNVAIGYDEGSVLLKV  192 (381)
Q Consensus       174 ~~~~~l~~~~~dg~v~i~~  192 (381)
                      ++|.++++++.|..+.+|.
T Consensus       191 ~~gd~i~ScGmDhslk~W~  209 (385)
T KOG1034|consen  191 LDGDRIASCGMDHSLKLWR  209 (385)
T ss_pred             CCCCeeeccCCcceEEEEe
Confidence            9999999999999999987

>KOG2106|consensus

Probab=99.63  E-value=1.6e-14  Score=126.87  Aligned_cols=207  Identities=21%  Similarity=0.319  Sum_probs=156.4

Q ss_pred             HHHHhhhcceeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEE
Q psy4650          28 IETIVRETKVDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIW  107 (381)
Q Consensus        28 ~~~~~~~~~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vw  107 (381)
                      +++..|...-.+++.+++.  +++|..+|.|.||++.  .....+....|.+.|.++..-.+|.   |+||+.|+.|..|
T Consensus       241 fek~ekk~Vl~v~F~engd--viTgDS~G~i~Iw~~~--~~~~~k~~~aH~ggv~~L~~lr~Gt---llSGgKDRki~~W  313 (626)
T KOG2106|consen  241 FEKREKKFVLCVTFLENGD--VITGDSGGNILIWSKG--TNRISKQVHAHDGGVFSLCMLRDGT---LLSGGKDRKIILW  313 (626)
T ss_pred             cccccceEEEEEEEcCCCC--EEeecCCceEEEEeCC--CceEEeEeeecCCceEEEEEecCcc---EeecCccceEEec
Confidence            3444455556777777655  7899999999999985  3455556669999999999988876   7889999999999


Q ss_pred             ECCCC----------------------------------------eEEEEeccCCCCEEEEEEecCCCEEEEEeCCCCEE
Q psy4650         108 DYQNK----------------------------------------TCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVR  147 (381)
Q Consensus       108 d~~~~----------------------------------------~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~  147 (381)
                      |-.-.                                        .......+|......++.+|+..++++++.|+.++
T Consensus       314 d~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~  393 (626)
T KOG2106|consen  314 DDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVR  393 (626)
T ss_pred             cccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEE
Confidence            84210                                        00112357888889999999999999999999999


Q ss_pred             EEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCceEEEecCCCEEEEEecCceeecccccCCcc
Q psy4650         148 VWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKVGREEPAVSMDVNGCKIIWARHSEVQQANLKTMPEV  227 (381)
Q Consensus       148 vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  227 (381)
                      +|+  ..++.++.. ...++.|+.|+|.| .+|.|...|...+          +|..+...+... .+.  ..+.    .
T Consensus       394 lW~--~~k~~wt~~-~~d~~~~~~fhpsg-~va~Gt~~G~w~V----------~d~e~~~lv~~~-~d~--~~ls----~  452 (626)
T KOG2106|consen  394 LWN--DHKLEWTKI-IEDPAECADFHPSG-VVAVGTATGRWFV----------LDTETQDLVTIH-TDN--EQLS----V  452 (626)
T ss_pred             Ecc--CCceeEEEE-ecCceeEeeccCcc-eEEEeeccceEEE----------EecccceeEEEE-ecC--CceE----E
Confidence            999  555555554 34788999999999 9999999999998          777654433221 111  1111    1


Q ss_pred             ccccCCceEEeeehHHHHHhccCCCcChhHHHHHH
Q psy4650         228 FENITAGVVLTLSVHVTIKYRLDISDSHRSVAKLR  262 (381)
Q Consensus       228 ~~~~~dg~~l~~~~~d~~~~~~d~~~~~~~~~~l~  262 (381)
                      +.++|+|.++++++.|+.+|++-++.+.+...++.
T Consensus       453 v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~  487 (626)
T KOG2106|consen  453 VRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVG  487 (626)
T ss_pred             EEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEee
Confidence            56789999999999999999998888776555543

>KOG2096|consensus

Probab=99.63  E-value=5.9e-15  Score=122.60  Aligned_cols=180  Identities=15%  Similarity=0.144  Sum_probs=129.9

Q ss_pred             EEEecCCCcc---ceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCC-----------------------
Q psy4650          58 VKAFNPIQVA---TLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQN-----------------------  111 (381)
Q Consensus        58 v~i~~~~~~~---~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~-----------------------  111 (381)
                      ...|++.+..   ...+..|+||.+.|++++|+.+|.  +|++++.|++|++|+++.                       
T Consensus        63 ~~~~k~~q~~f~Hpl~~~~LKgH~~~vt~~~FsSdGK--~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~F  140 (420)
T KOG2096|consen   63 NDQWKAKQPTFVHPLNVSVLKGHKKEVTDVAFSSDGK--KLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVF  140 (420)
T ss_pred             hhhhcccCCCcccchhhhhhhccCCceeeeEEcCCCc--eeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEE
Confidence            4556665422   123457899999999999999887  799999999999999864                       


Q ss_pred             -------------CeEEEEec-----------------------cCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCe
Q psy4650         112 -------------KTCVQTLE-----------------------GHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHR  155 (381)
Q Consensus       112 -------------~~~~~~~~-----------------------~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~  155 (381)
                                   |..++.++                       .|.-.+..+.....+.++++++.|..|.+||+. |+
T Consensus       141 apDc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq  219 (420)
T KOG2096|consen  141 APDCKSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQ  219 (420)
T ss_pred             CCCcceEEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cc
Confidence                         11111111                       133345555556667799999999999999998 88


Q ss_pred             eeEEEecCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCceEEEecCCCEEEEEecCceeecccccCCc---cccccC
Q psy4650         156 LEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKVGREEPAVSMDVNGCKIIWARHSEVQQANLKTMPE---VFENIT  232 (381)
Q Consensus       156 ~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~  232 (381)
                      .+.++..........+.+|+|+++++++-...+++|..      .|..++..     ..-.....+.+|..   .++|++
T Consensus       220 ~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~------~f~kdG~f-----qev~rvf~LkGH~saV~~~aFsn  288 (420)
T KOG2096|consen  220 LLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEP------IFTKDGTF-----QEVKRVFSLKGHQSAVLAAAFSN  288 (420)
T ss_pred             eeeeeccccccccceeeCCCCcEEEEecCCCCceEEEE------EeccCcch-----hhhhhhheeccchhheeeeeeCC
Confidence            99988877777888999999999999999999999641      12111111     01111223444432   278999


Q ss_pred             CceEEeeehHHHHHhccCC
Q psy4650         233 AGVVLTLSVHVTIKYRLDI  251 (381)
Q Consensus       233 dg~~l~~~~~d~~~~~~d~  251 (381)
                      +...+++++.|+...+||.
T Consensus       289 ~S~r~vtvSkDG~wriwdt  307 (420)
T KOG2096|consen  289 SSTRAVTVSKDGKWRIWDT  307 (420)
T ss_pred             CcceeEEEecCCcEEEeec
Confidence            9999999999999999886

>KOG0300|consensus

Probab=99.62  E-value=1.3e-15  Score=126.37  Aligned_cols=200  Identities=20%  Similarity=0.256  Sum_probs=158.4

Q ss_pred             ceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEEEeccCCCCEEEEEEecCCCEEEEEeCCCCEE
Q psy4650          68 TLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVR  147 (381)
Q Consensus        68 ~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~  147 (381)
                      ..+.+.+.||.+.|+.++...  ..+.+.+++.|.+.++|.++++.++..+.||.+.|.++.|++.+.++++++.|++-.
T Consensus       138 ~~lvre~~GHkDGiW~Vaa~~--tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taH  215 (481)
T KOG0300|consen  138 FRLVRELEGHKDGIWHVAADS--TQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAH  215 (481)
T ss_pred             Eeehhhhcccccceeeehhhc--CCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchH
Confidence            345667889999999998754  345889999999999999999999999999999999999999999999999999999


Q ss_pred             EEeC------CC----------------------------------CeeeEEEecCCcceEEEEEcCCCCEEEEEeCCCe
Q psy4650         148 VWHS------GT----------------------------------HRLEISLTYGLERVWTISSLKGSNNVAIGYDEGS  187 (381)
Q Consensus       148 vwd~------~~----------------------------------~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~  187 (381)
                      ||..      ..                                  ..++..+.+|...|.+..|...|..+++++.|.+
T Consensus       216 IW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRT  295 (481)
T KOG0300|consen  216 IWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRT  295 (481)
T ss_pred             HHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeecccc
Confidence            9951      10                                  1134567789999999999999999999999999


Q ss_pred             EEEEecCCCceEEEecCCCEEEEEecCceeecccccCCccccccCCceEEeeehHHHHHhccCCCcChhHHHHHHHHHhh
Q psy4650         188 VLLKVGREEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSVHVTIKYRLDISDSHRSVAKLRAAAET  267 (381)
Q Consensus       188 v~i~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~d~~~~~~d~~~~~~~~~~l~~~~e~  267 (381)
                      -.+          ||..+|.++-.+..+.+.-...+      -.|..+.+++.+.|.+-..||+++.-..+.-+..+.+.
T Consensus       296 Anl----------wDVEtge~v~~LtGHd~ELtHcs------tHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdt  359 (481)
T KOG0300|consen  296 ANL----------WDVETGEVVNILTGHDSELTHCS------THPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDT  359 (481)
T ss_pred             cee----------eeeccCceeccccCcchhccccc------cCCcceEEEEeccCceeEeccchhhcceeeeecccccc
Confidence            998          99999998877665544333222      23678888999999999999998655555555555443


Q ss_pred             h--------hhhccccceeeEEEecc
Q psy4650         268 C--------MHVLSTLQSSNVFVESL  285 (381)
Q Consensus       268 a--------k~~lS~~~~~~i~~~~l  285 (381)
                      +        .++.|.+....+-++.|
T Consensus       360 VTS~vF~~dd~vVSgSDDrTvKvWdL  385 (481)
T KOG0300|consen  360 VTSVVFNTDDRVVSGSDDRTVKVWDL  385 (481)
T ss_pred             eeEEEEecCCceeecCCCceEEEeee
Confidence            2        34556677777777655

>KOG0268|consensus

Probab=99.62  E-value=1.2e-15  Score=128.58  Aligned_cols=151  Identities=17%  Similarity=0.188  Sum_probs=123.4

Q ss_pred             eeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCC-eEE
Q psy4650          37 VDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNK-TCV  115 (381)
Q Consensus        37 ~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~-~~~  115 (381)
                      ..+.+++....+|++++.|+.|.+||+.+..  +++.+. -+..-+.++|+|.+.  .+++|+.|..+..+|++.. .++
T Consensus       191 ~svkfNpvETsILas~~sDrsIvLyD~R~~~--Pl~KVi-~~mRTN~IswnPeaf--nF~~a~ED~nlY~~DmR~l~~p~  265 (433)
T KOG0268|consen  191 SSVKFNPVETSILASCASDRSIVLYDLRQAS--PLKKVI-LTMRTNTICWNPEAF--NFVAANEDHNLYTYDMRNLSRPL  265 (433)
T ss_pred             eEEecCCCcchheeeeccCCceEEEecccCC--ccceee-eeccccceecCcccc--ceeeccccccceehhhhhhcccc
Confidence            4566778778899999999999999998633  333322 134456899999555  6889999999999999876 478


Q ss_pred             EEeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEec-CCcceEEEEEcCCCCEEEEEeCCCeEEEEe
Q psy4650         116 QTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTY-GLERVWTISSLKGSNNVAIGYDEGSVLLKV  192 (381)
Q Consensus       116 ~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~-~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~  192 (381)
                      ..+++|...|..+.|+|.|.-+++||.|.+|+||.++.+...-.+.. .-..|.+|.|+.+.+++++||+|+.+++|-
T Consensus       266 ~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWk  343 (433)
T KOG0268|consen  266 NVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWK  343 (433)
T ss_pred             hhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeee
Confidence            88999999999999999999999999999999999987754333211 235799999999999999999999999953

>KOG2048|consensus

Probab=99.62  E-value=5.8e-14  Score=127.44  Aligned_cols=205  Identities=14%  Similarity=0.186  Sum_probs=152.7

Q ss_pred             ceEEEEEecCCeEEEecCCCccceeeEeecccc-ccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEEEeccCCCC
Q psy4650          46 IEYKISYQESSRVKAFNPIQVATLILKTLYGHE-KGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQN  124 (381)
Q Consensus        46 ~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~-~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~  124 (381)
                      ...++.+-.+|.|.+|++.. .-.....+.|+. ..|.+++|++.+   .|.|.+.+|+|.-||+.+++++..+....+.
T Consensus        37 S~~lAvsRt~g~IEiwN~~~-~w~~~~vi~g~~drsIE~L~W~e~~---RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~  112 (691)
T KOG2048|consen   37 SNQLAVSRTDGNIEIWNLSN-NWFLEPVIHGPEDRSIESLAWAEGG---RLFSSGLSGSITEWDLHTLKQKYNIDSNGGA  112 (691)
T ss_pred             CCceeeeccCCcEEEEccCC-CceeeEEEecCCCCceeeEEEccCC---eEEeecCCceEEEEecccCceeEEecCCCcc
Confidence            44688899999999999975 333445566665 579999999644   4889999999999999999999999988999


Q ss_pred             EEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEE--EecCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCC-------
Q psy4650         125 ISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEIS--LTYGLERVWTISSLKGSNNVAIGYDEGSVLLKVGRE-------  195 (381)
Q Consensus       125 v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~--~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~~~~-------  195 (381)
                      |++++.+|.+..++.|+.||.+..++...+.....  +....+++.++.|+|++..++.|+.||.|++|+...       
T Consensus       113 IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~  192 (691)
T KOG2048|consen  113 IWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHII  192 (691)
T ss_pred             eeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEe
Confidence            99999999999999999999888888887766543  445678999999999999999999999999998432       


Q ss_pred             -----------------------CceEEEecCCCEEEEEecCceeecccccCCcc---ccccCCceEEeeehHHHHHhcc
Q psy4650         196 -----------------------EPAVSMDVNGCKIIWARHSEVQQANLKTMPEV---FENITAGVVLTLSVHVTIKYRL  249 (381)
Q Consensus       196 -----------------------~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~dg~~l~~~~~d~~~~~~  249 (381)
                                             ..+++-|..+...+|+........+...+...   ++-.+++..+.+++.|.+...+
T Consensus       193 ~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~  272 (691)
T KOG2048|consen  193 TMQLDRLSKREPTIVWSVLFLRDSTIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQY  272 (691)
T ss_pred             eecccccccCCceEEEEEEEeecCcEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEE
Confidence                                   23334444444555655444333333222211   3445666777777777766655


Q ss_pred             CCCcC
Q psy4650         250 DISDS  254 (381)
Q Consensus       250 d~~~~  254 (381)
                      ....+
T Consensus       273 ~~~~~  277 (691)
T KOG2048|consen  273 SLTTN  277 (691)
T ss_pred             EecCC
Confidence            54443

>KOG0642|consensus

Probab=99.62  E-value=7.3e-15  Score=130.65  Aligned_cols=189  Identities=17%  Similarity=0.215  Sum_probs=145.7

Q ss_pred             CceEEEEEecCCeEEEecCCC------ccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCC------
Q psy4650          45 MIEYKISYQESSRVKAFNPIQ------VATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNK------  112 (381)
Q Consensus        45 ~~~~~~s~~~d~~v~i~~~~~------~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~------  112 (381)
                      ....+++++.||++++|++..      ..-..+.++.+|.++|.|+++.+.++  .+.+|+-||+|+.|++...      
T Consensus       305 sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~--~~ysgg~Dg~I~~w~~p~n~dp~ds  382 (577)
T KOG0642|consen  305 SEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGE--HCYSGGIDGTIRCWNLPPNQDPDDS  382 (577)
T ss_pred             CCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCce--EEEeeccCceeeeeccCCCCCcccc
Confidence            355899999999999999822      12346788999999999999998777  7999999999999966421      


Q ss_pred             ----eEEEEeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEe---------------------------
Q psy4650         113 ----TCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLT---------------------------  161 (381)
Q Consensus       113 ----~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~---------------------------  161 (381)
                          .....+.||++.|+.+++|+....|++|+.||++++|+...... .++.                           
T Consensus       383 ~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~  461 (577)
T KOG0642|consen  383 YDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRF  461 (577)
T ss_pred             cCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCcceEeeccchhHhhhhhccc
Confidence                23456789999999999999999999999999999998764433 0000                           


Q ss_pred             -------------------------cCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCceEEEecCCCEEEEEecCce
Q psy4650         162 -------------------------YGLERVWTISSLKGSNNVAIGYDEGSVLLKVGREEPAVSMDVNGCKIIWARHSEV  216 (381)
Q Consensus       162 -------------------------~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~~~~~~~~~~d~~~~~~~~~~~~~~  216 (381)
                                               .....+..+.++|++....++..|+.+++          +|..++.++.....+.
T Consensus       462 ~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~----------~dn~~~~~l~s~~a~~  531 (577)
T KOG0642|consen  462 GYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRF----------FDNKTGKILHSMVAHK  531 (577)
T ss_pred             ccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceec----------ccccccccchheeecc
Confidence                                     00113566778888888888888888888          8998998887765432


Q ss_pred             eecccccCCccccccCCceEEeeehHHHHHhccCCC
Q psy4650         217 QQANLKTMPEVFENITAGVVLTLSVHVTIKYRLDIS  252 (381)
Q Consensus       217 ~~~~~~~~~~~~~~~~dg~~l~~~~~d~~~~~~d~~  252 (381)
                      .  .+.+    .++.|.|-++++++.+++...|.+.
T Consensus       532 ~--svts----lai~~ng~~l~s~s~d~sv~l~kld  561 (577)
T KOG0642|consen  532 D--SVTS----LAIDPNGPYLMSGSHDGSVRLWKLD  561 (577)
T ss_pred             c--eecc----eeecCCCceEEeecCCceeehhhcc
Confidence            2  2222    3556899999999999988887653

>KOG2055|consensus

Probab=99.61  E-value=1.5e-14  Score=125.70  Aligned_cols=218  Identities=11%  Similarity=0.131  Sum_probs=152.7

Q ss_pred             cccccccCCChhhHHHHhhhcceeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccE
Q psy4650          15 NKRALNTELTETDIETIVRETKVDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPY   94 (381)
Q Consensus        15 ~k~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~   94 (381)
                      .++|-..+..|...+.-.......+.++|. ..++++++.|+++++|.+.......++.+.--..+|.++.|.|+|.. .
T Consensus       195 ~~tl~~krlkDaNa~~ps~~~I~sv~FHp~-~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~-~  272 (514)
T KOG2055|consen  195 PGTLNIKRLKDANAAHPSHGGITSVQFHPT-APLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHS-V  272 (514)
T ss_pred             CceeeeEeecccccCCcCcCCceEEEecCC-CceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCce-E
Confidence            344444444444444444455567788876 55888999999999999876666677777667789999999998874 7


Q ss_pred             EEEEcCCCeEEEEECCCCeEEE------------------------EeccC--------------------CCCEEEEEE
Q psy4650          95 LISGADDRLVKIWDYQNKTCVQ------------------------TLEGH--------------------GQNISAVCF  130 (381)
Q Consensus        95 l~s~~~d~~v~vwd~~~~~~~~------------------------~~~~~--------------------~~~v~~~~~  130 (381)
                      +++++.......||+.+.+...                        .+.|+                    .+.|..+.|
T Consensus       273 i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~f  352 (514)
T KOG2055|consen  273 IFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTF  352 (514)
T ss_pred             EEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEE
Confidence            8889999999999997632110                        11122                    345678899


Q ss_pred             ecCCCEEEEEeCCCCEEEEeCCCCeeeEEEecC-CcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCceEEEecCCCEEE
Q psy4650         131 HPELPIVITGSEDGSVRVWHSGTHRLEISLTYG-LERVWTISSLKGSNNVAIGYDEGSVLLKVGREEPAVSMDVNGCKII  209 (381)
Q Consensus       131 ~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~-~~~v~~v~~~~~~~~l~~~~~dg~v~i~~~~~~~~~~~d~~~~~~~  209 (381)
                      +.++..+.+++.+|.|.+||++...++..+... .-.-+++|.+++|.+||+|+..|.|-|          ||..+...-
T Consensus       353 sSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNI----------Yd~~s~~~s  422 (514)
T KOG2055|consen  353 SSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNI----------YDGNSCFAS  422 (514)
T ss_pred             ecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEE----------eccchhhcc
Confidence            999999999999999999999999888887643 223467888899999999999999999          554332211


Q ss_pred             EEecCceeecccccCCccccccCCceEEeeehHHH
Q psy4650         210 WARHSEVQQANLKTMPEVFENITAGVVLTLSVHVT  244 (381)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~d~  244 (381)
                      -...+....-++......+.|++|+++|++++...
T Consensus       423 ~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~  457 (514)
T KOG2055|consen  423 TNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVK  457 (514)
T ss_pred             CCCCchhhhhhhheeeeeeeeCcchhhhhhhhhcc
Confidence            11111111123333223378899999999988643

>TIGR01991 HscA Fe-S protein assembly chaperone HscA

Probab=99.61  E-value=1.3e-16  Score=152.85  Aligned_cols=105  Identities=20%  Similarity=0.238  Sum_probs=93.7

Q ss_pred             ccCCCcChhHHHHHHHHHhhhhhhccccceeeEEEecccCCcccccccChHHHHHHHHHHhhhhhhhhHhhhccccceee
Q psy4650         248 RLDISDSHRSVAKLRAAAETCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIGGLLTSFVQPCMHVLSTLQSSNV  327 (381)
Q Consensus       248 ~~d~~~~~~~~~~l~~~~e~ak~~lS~~~~~~i~~~~l~~g~~~~~~itr~~fe~l~~~l~~~~~~~~~~~Ls~~~~~~~  327 (381)
                      ..+...+++.+.+|+.+||++|+.||...++.+.++.  +|.++..++||++|++++.+++.++.++++++|..   +++
T Consensus       234 ~~~~~~~~~~~~~L~~~ae~aK~~LS~~~~~~i~i~~--~g~~~~~~itr~efe~l~~~ll~~i~~~i~~~L~~---a~~  308 (599)
T TIGR01991       234 GISADLNPEDQRLLLQAARAAKEALTDAESVEVDFTL--DGKDFKGKLTRDEFEALIQPLVQKTLSICRRALRD---AGL  308 (599)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHhCCCCceEEEEEEE--CCcEEEEEEeHHHHHHHHHHHHHHHHHHHHHHHHH---cCC
Confidence            3344567788999999999999999999988888874  78999999999999999999999999999999987   556


Q ss_pred             EeeccccCcceEEeecHHHHHHHHHHHHHH
Q psy4650         328 FVESLYDGLDFHHNVSRARFESLIGGLLTS  357 (381)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~  357 (381)
                      ..++++.++++||++++|.++++++++|++
T Consensus       309 ~~~~id~ViLvGGssriP~V~~~l~~~f~~  338 (599)
T TIGR01991       309 SVEEIKGVVLVGGSTRMPLVRRAVAELFGQ  338 (599)
T ss_pred             ChhhCCEEEEECCcCCChHHHHHHHHHhCC
Confidence            677788889999999999999999999974

The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.

>KOG1408|consensus

Probab=99.59  E-value=1.4e-14  Score=132.19  Aligned_cols=148  Identities=16%  Similarity=0.209  Sum_probs=130.9

Q ss_pred             ceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCc---------------------------------
Q psy4650          46 IEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDK---------------------------------   92 (381)
Q Consensus        46 ~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~---------------------------------   92 (381)
                      ...|++++.|..|++||... .-.+++++.+|...|+++.|...|-.                                 
T Consensus       516 ~kLLASasrdRlIHV~Dv~r-ny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~  594 (1080)
T KOG1408|consen  516 NKLLASASRDRLIHVYDVKR-NYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTL  594 (1080)
T ss_pred             hHhhhhccCCceEEEEeccc-ccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceecccccccc
Confidence            56899999999999999865 45567888999999988888765521                                 


Q ss_pred             --------------cEEEEEcCCCeEEEEECCCCeEEEEecc---CCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCe
Q psy4650          93 --------------PYLISGADDRLVKIWDYQNKTCVQTLEG---HGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHR  155 (381)
Q Consensus        93 --------------~~l~s~~~d~~v~vwd~~~~~~~~~~~~---~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~  155 (381)
                                    .++++++.|+.|+||++.+++....|++   |.+....+...|.|-++++.+.|+++.++|..+|+
T Consensus       595 ~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgE  674 (1080)
T KOG1408|consen  595 SKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGE  674 (1080)
T ss_pred             ccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccch
Confidence                          3578888899999999999999999976   66778899999999999999999999999999999


Q ss_pred             eeEEEecCCcceEEEEEcCCCCEEEEEeCCCeEEEEecC
Q psy4650         156 LEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKVGR  194 (381)
Q Consensus       156 ~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~~~  194 (381)
                      ++..+.+|...|+.+.|.++.++|++.+.||+|.+|--.
T Consensus       675 cvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp  713 (1080)
T KOG1408|consen  675 CVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLP  713 (1080)
T ss_pred             hhhhhcCcchheeeeeecccchhheeecCCceEEEEECc
Confidence            999999999999999999999999999999999998633

>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins

Probab=99.58  E-value=4.2e-16  Score=151.76  Aligned_cols=289  Identities=21%  Similarity=0.270  Sum_probs=181.4

Q ss_pred             chhhhHHHhhhhhcccccccCCChhhHHHHhhhcceeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeeccc----
Q psy4650           2 SRLISQAKNTIIKNKRALNTELTETDIETIVRETKVDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGH----   77 (381)
Q Consensus         2 ~~~~~~~~~t~~~~k~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h----   77 (381)
                      .++.+||+++++.+||++|++++++.+++..+..++.+...+++ ...+.....|..+.|++.+.....+..++.+    
T Consensus        52 ~~~~~~~~~~~~~~k~liG~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~  130 (602)
T PF00012_consen   52 SQMIRNPKNTIYNLKRLIGRKFDDPDVQKEKKKFPYKVVEDPDG-KVYFEVDYDGKSKTYSPEELSAMILKYLKEMAEKY  130 (602)
T ss_dssp             HTTTTSGGGEEESGGGTTTSBTTSHHHHHHHTTSSSEEEEETTT-EEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHH
T ss_pred             hhcccccccccccccccccccccccccchhhhcccccccccccc-cccccccccccceeeeeecccccchhhhcccchhh
Confidence            35678999999999999999999999999999999999887654 3444444556777888866555555444421    


Q ss_pred             -cccEEEEEeeeCCC-----ccEEEEEcCCCeEEEEECCCCeEEEEeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeC
Q psy4650          78 -EKGVNCVDYYHGGD-----KPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHS  151 (381)
Q Consensus        78 -~~~v~~~~~~~~~~-----~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~  151 (381)
                       ...+..+.++-...     +..+..+.        ....-..+..+....+.  +++|.-....     ..+.+.|+|+
T Consensus       131 ~~~~~~~~vitVPa~~~~~qr~~~~~Aa--------~~agl~~~~li~Ep~Aa--a~~y~~~~~~-----~~~~vlv~D~  195 (602)
T PF00012_consen  131 LGEKVTDVVITVPAYFTDEQRQALRDAA--------ELAGLNVLRLINEPTAA--ALAYGLERSD-----KGKTVLVVDF  195 (602)
T ss_dssp             HTSBEEEEEEEE-TT--HHHHHHHHHHH--------HHTT-EEEEEEEHHHHH--HHHTTTTSSS-----SEEEEEEEEE
T ss_pred             cccccccceeeechhhhhhhhhcccccc--------cccccccceeecccccc--cccccccccc-----cccceecccc
Confidence             12233332221111     00000000        00011222223222211  1111111111     3457888888


Q ss_pred             CCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCceEEEecCCCEEEEEecCceeecccccCCcccccc
Q psy4650         152 GTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKVGREEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENI  231 (381)
Q Consensus       152 ~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (381)
                      ..|+...++-         .+.           +|.+.+-.      ..++                ..++|...     
T Consensus       196 Gggt~dvs~~---------~~~-----------~~~~~v~~------~~~~----------------~~lGG~~~-----  228 (602)
T PF00012_consen  196 GGGTFDVSVV---------EFS-----------NGQFEVLA------TAGD----------------NNLGGRDF-----  228 (602)
T ss_dssp             ESSEEEEEEE---------EEE-----------TTEEEEEE------EEEE----------------TTCSHHHH-----
T ss_pred             ccceEeeeeh---------hcc-----------cccccccc------cccc----------------ccccccee-----
Confidence            8776544332         111           11111100      0011                12222221     


Q ss_pred             CCceEEeeehHHHHHhccCCCcChhHHHHHHHHHhhhhhhccc--cceeeEEEecccC-CcccccccChHHHHHHHHHHh
Q psy4650         232 TAGVVLTLSVHVTIKYRLDISDSHRSVAKLRAAAETCMHVLST--LQSSNVFVESLYD-GLDFHHNVSRARFESLIGGLL  308 (381)
Q Consensus       232 ~dg~~l~~~~~d~~~~~~d~~~~~~~~~~l~~~~e~ak~~lS~--~~~~~i~~~~l~~-g~~~~~~itr~~fe~l~~~l~  308 (381)
                      +....-++.......+..++..+++.+.+|+.+|+++|+.||.  .....+.+.++++ |.++...++|++|++++.+++
T Consensus       229 D~~l~~~~~~~~~~~~~~d~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~~~~~~~~~~~~~~~~~itr~~fe~l~~~~~  308 (602)
T PF00012_consen  229 DEALAEYLLEKFKKKYKIDLRENPRAMARLLEAAEKAKEQLSSNDNTEITISIESLYDDGEDFSITITREEFEELCEPLL  308 (602)
T ss_dssp             HHHHHHHHHHHHHHHHSS-GTCSHHHHHHHHHHHHHHHHHTTTSSSSEEEEEEEEEETTTEEEEEEEEHHHHHHHTHHHH
T ss_pred             cceeeccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceecccccccc
Confidence            1111111223344455677888889999999999999999999  6777888888888 899999999999999999999


Q ss_pred             hhhhhhhHhhhccccceeeEeeccccCcceEEeecHHHHHHHHHHHHH
Q psy4650         309 TSFVQPCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIGGLLT  356 (381)
Q Consensus       309 ~~~~~~~~~~Ls~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~  356 (381)
                      .++.++++++|..   +.+..+.+..++++||+.+.|.++++++++|+
T Consensus       309 ~~~~~~i~~~l~~---~~~~~~~i~~V~lvGG~sr~p~v~~~l~~~f~  353 (602)
T PF00012_consen  309 ERIIEPIEKALKD---AGLKKEDIDSVLLVGGSSRIPYVQEALKELFG  353 (602)
T ss_dssp             HHTHHHHHHHHHH---TT--GGGESEEEEESGGGGSHHHHHHHHHHTT
T ss_pred             ccccccccccccc---ccccccccceeEEecCcccchhhhhhhhhccc
Confidence            9999999999987   44557778888999999999999999999997

Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....

>KOG1408|consensus

Probab=99.57  E-value=4.5e-14  Score=128.98  Aligned_cols=199  Identities=14%  Similarity=0.181  Sum_probs=155.3

Q ss_pred             eeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeC-CCccEEEEEcCCCeEEEEECCCC-eE
Q psy4650          37 VDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHG-GDKPYLISGADDRLVKIWDYQNK-TC  114 (381)
Q Consensus        37 ~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~-~~~~~l~s~~~d~~v~vwd~~~~-~~  114 (381)
                      .++...++ +.+|++|...|++++|++..  ...+-.+.+|...|.|+.|+.. -...+|++++.|+-|+|+|+... .+
T Consensus       463 R~~~vSp~-gqhLAsGDr~GnlrVy~Lq~--l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l  539 (1080)
T KOG1408|consen  463 RALAVSPD-GQHLASGDRGGNLRVYDLQE--LEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDL  539 (1080)
T ss_pred             EEEEECCC-cceecccCccCceEEEEehh--hhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccch
Confidence            45555665 67999999999999999863  4455678899999999999853 23458999999999999998642 11


Q ss_pred             EEEeccCC-------------------------------------------------CCEEEEEEecCCCEEEEEeCCCC
Q psy4650         115 VQTLEGHG-------------------------------------------------QNISAVCFHPELPIVITGSEDGS  145 (381)
Q Consensus       115 ~~~~~~~~-------------------------------------------------~~v~~~~~~p~~~~l~s~~~d~~  145 (381)
                      ++++.+|.                                                 ..+..++..|...++++++.|+.
T Consensus       540 ~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrn  619 (1080)
T KOG1408|consen  540 VQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRN  619 (1080)
T ss_pred             hhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccc
Confidence            22222222                                                 23456777788889999999999


Q ss_pred             EEEEeCCCCeeeEEEec---CCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCceEEEecCCCEEEEEecCceeecccc
Q psy4650         146 VRVWHSGTHRLEISLTY---GLERVWTISSLKGSNNVAIGYDEGSVLLKVGREEPAVSMDVNGCKIIWARHSEVQQANLK  222 (381)
Q Consensus       146 i~vwd~~~~~~~~~~~~---~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~  222 (381)
                      |+|||..+|+..+.+++   |.+....+...|.|.++++.+.|.++.+          +|..+|.++..+..+..  .+.
T Consensus       620 irif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~----------~Df~sgEcvA~m~GHsE--~VT  687 (1080)
T KOG1408|consen  620 IRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCF----------VDFVSGECVAQMTGHSE--AVT  687 (1080)
T ss_pred             eEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEE----------EEeccchhhhhhcCcch--hee
Confidence            99999999999999976   4567888999999999999999999999          88888887665544322  112


Q ss_pred             cCCccccccCCceEEeeehHHHHHhccCCCcC
Q psy4650         223 TMPEVFENITAGVVLTLSVHVTIKYRLDISDS  254 (381)
Q Consensus       223 ~~~~~~~~~~dg~~l~~~~~d~~~~~~d~~~~  254 (381)
                      +    +.|.+|.+.|.+++.|+.+++|.+...
T Consensus       688 G----~kF~nDCkHlISvsgDgCIFvW~lp~~  715 (1080)
T KOG1408|consen  688 G----VKFLNDCKHLISVSGDGCIFVWKLPLT  715 (1080)
T ss_pred             e----eeecccchhheeecCCceEEEEECchh
Confidence            2    467899999999999999999998653

>KOG1273|consensus

Probab=99.56  E-value=3e-13  Score=112.45  Aligned_cols=209  Identities=13%  Similarity=0.140  Sum_probs=146.7

Q ss_pred             eeecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEEEe
Q psy4650          39 ITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTL  118 (381)
Q Consensus        39 i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~  118 (381)
                      +.+++- +.+++.|..+|.+.|||..+  ..+-+.+.+|..+|.|++||++|.  .|+|+|.|..+.+||+..|.++..+
T Consensus        29 ~~Fs~~-G~~lAvGc~nG~vvI~D~~T--~~iar~lsaH~~pi~sl~WS~dgr--~LltsS~D~si~lwDl~~gs~l~ri  103 (405)
T KOG1273|consen   29 CQFSRW-GDYLAVGCANGRVVIYDFDT--FRIARMLSAHVRPITSLCWSRDGR--KLLTSSRDWSIKLWDLLKGSPLKRI  103 (405)
T ss_pred             EEeccC-cceeeeeccCCcEEEEEccc--cchhhhhhccccceeEEEecCCCC--EeeeecCCceeEEEeccCCCceeEE
Confidence            334443 66999999999999999974  345677889999999999999887  7999999999999999999988888


Q ss_pred             ccCCCCEEEEEEecCCC-EEEEEeCCCCEEEEeCCCCeeeEEEec----CCcceEEEEEcCCCCEEEEEeCCCeEEEEec
Q psy4650         119 EGHGQNISAVCFHPELP-IVITGSEDGSVRVWHSGTHRLEISLTY----GLERVWTISSLKGSNNVAIGYDEGSVLLKVG  193 (381)
Q Consensus       119 ~~~~~~v~~~~~~p~~~-~l~s~~~d~~i~vwd~~~~~~~~~~~~----~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~~  193 (381)
                      . ..++|+...|+|-.. .++.+-.+..-.+-++..+....--..    ....-.+..|++.|+++.+|...|.+.+   
T Consensus       104 r-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv---  179 (405)
T KOG1273|consen  104 R-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLV---  179 (405)
T ss_pred             E-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEE---
Confidence            7 567999999999554 444443444455555554322111111    1112234568899999999999999999   


Q ss_pred             CCCceEEEecCCCEEEEEecCceeecccccCCccccccCCceEEeeehHHHHHhccCCCc--------ChhHHHHHHHHH
Q psy4650         194 REEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSVHVTIKYRLDISD--------SHRSVAKLRAAA  265 (381)
Q Consensus       194 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~d~~~~~~d~~~--------~~~~~~~l~~~~  265 (381)
                             ++..+-.++....-..    ...... +.++..|+.+.+-..|..++.++.+.        ...+++++....
T Consensus       180 -------~~a~t~e~vas~rits----~~~IK~-I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvV  247 (405)
T KOG1273|consen  180 -------YDAETLECVASFRITS----VQAIKQ-IIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVV  247 (405)
T ss_pred             -------Eecchheeeeeeeech----heeeeE-EEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHH
Confidence                   7777776654432211    111111 34566788888888887766665431        234677777777


Q ss_pred             hhh
Q psy4650         266 ETC  268 (381)
Q Consensus       266 e~a  268 (381)
                      .++
T Consensus       248 Nk~  250 (405)
T KOG1273|consen  248 NKL  250 (405)
T ss_pred             hhh
Confidence            765

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.55  E-value=7e-13  Score=117.57  Aligned_cols=185  Identities=13%  Similarity=0.142  Sum_probs=133.0

Q ss_pred             eEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEEEeccCCCCEE
Q psy4650          47 EYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNIS  126 (381)
Q Consensus        47 ~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~  126 (381)
                      .++++++.|+.+++||+..  ...+..+.+|. .+.++.|+|++.. .+++++.++.+++||..+++....+..+.. +.
T Consensus         2 ~~~~s~~~d~~v~~~d~~t--~~~~~~~~~~~-~~~~l~~~~dg~~-l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~   76 (300)
T TIGR03866         2 KAYVSNEKDNTISVIDTAT--LEVTRTFPVGQ-RPRGITLSKDGKL-LYVCASDSDTIQVIDLATGEVIGTLPSGPD-PE   76 (300)
T ss_pred             cEEEEecCCCEEEEEECCC--CceEEEEECCC-CCCceEECCCCCE-EEEEECCCCeEEEEECCCCcEEEeccCCCC-cc
Confidence            3678899999999999864  33556666554 4678999998762 446778899999999999887777765543 47


Q ss_pred             EEEEecCCCEEEE-EeCCCCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCCCe-EEEEecCCCceEEEecC
Q psy4650         127 AVCFHPELPIVIT-GSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGS-VLLKVGREEPAVSMDVN  204 (381)
Q Consensus       127 ~~~~~p~~~~l~s-~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~-v~i~~~~~~~~~~~d~~  204 (381)
                      .++|+|++..++. ++.++.+++||+.+++.+..+..+ ..+.+++|+|+|..++++..++. +.+          ||..
T Consensus        77 ~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~~~~----------~d~~  145 (300)
T TIGR03866        77 LFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVG-VEPEGMAVSPDGKIVVNTSETTNMAHF----------IDTK  145 (300)
T ss_pred             EEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCC-CCcceEEECCCCCEEEEEecCCCeEEE----------EeCC
Confidence            7899999997654 456899999999998877766533 34678999999999998887654 344          5666


Q ss_pred             CCEEEEEecCceeecccccCCccccccCCceEEeeeh-HHHHHhccCCCcC
Q psy4650         205 GCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSV-HVTIKYRLDISDS  254 (381)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~-~d~~~~~~d~~~~  254 (381)
                      ++.........       .....+.|+|+|..++... .++..+.||+...
T Consensus       146 ~~~~~~~~~~~-------~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~  189 (300)
T TIGR03866       146 TYEIVDNVLVD-------QRPRFAEFTADGKELWVSSEIGGTVSVIDVATR  189 (300)
T ss_pred             CCeEEEEEEcC-------CCccEEEECCCCCEEEEEcCCCCEEEEEEcCcc
Confidence            65544332111       1111256789998886544 4667788888653

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG1524|consensus

Probab=99.55  E-value=6.8e-14  Score=123.87  Aligned_cols=195  Identities=12%  Similarity=0.136  Sum_probs=149.9

Q ss_pred             CCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEEEeccCCC
Q psy4650          44 DMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQ  123 (381)
Q Consensus        44 ~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~  123 (381)
                      .+...++-++.||.+.+.+-   ...+-+.+.+|.+.+.|-.|+|+|.  -|++++.||.|++|.- +|-...++.-...
T Consensus        73 ~~~d~~~i~s~DGkf~il~k---~~rVE~sv~AH~~A~~~gRW~~dGt--gLlt~GEDG~iKiWSr-sGMLRStl~Q~~~  146 (737)
T KOG1524|consen   73 KGSDTLLICSNDGRFVILNK---SARVERSISAHAAAISSGRWSPDGA--GLLTAGEDGVIKIWSR-SGMLRSTVVQNEE  146 (737)
T ss_pred             CCcceEEEEcCCceEEEecc---cchhhhhhhhhhhhhhhcccCCCCc--eeeeecCCceEEEEec-cchHHHHHhhcCc
Confidence            34567888899999888875   4566677889999999999999998  5999999999999994 4554555555677


Q ss_pred             CEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCC-------
Q psy4650         124 NISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKVGREE-------  196 (381)
Q Consensus       124 ~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~~~~~-------  196 (381)
                      +|.|++|.|+...++.|. .+.+.+=-+.....+...+.|.+-|.++.|++.+..+++|+.|-.+++|++...       
T Consensus       147 ~v~c~~W~p~S~~vl~c~-g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~Lf~S~~  225 (737)
T KOG1524|consen  147 SIRCARWAPNSNSIVFCQ-GGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGANLFTSAA  225 (737)
T ss_pred             eeEEEEECCCCCceEEec-CCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccCcccccCCh
Confidence            999999999988665553 345666556555566677889999999999999999999999999999996543       


Q ss_pred             -----ceEEEecCCCEEEEEecCceeecccccCCccccccCCceEEeeehHHHH
Q psy4650         197 -----PAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSVHVTI  245 (381)
Q Consensus       197 -----~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~d~~  245 (381)
                           .-+.|++++...+|+...-.....-.+..+-+.|++||..++.+...+.
T Consensus       226 ~ey~ITSva~npd~~~~v~S~nt~R~~~p~~GSifnlsWS~DGTQ~a~gt~~G~  279 (737)
T KOG1524|consen  226 EEYAITSVAFNPEKDYLLWSYNTARFSSPRVGSIFNLSWSADGTQATCGTSTGQ  279 (737)
T ss_pred             hccceeeeeeccccceeeeeeeeeeecCCCccceEEEEEcCCCceeeccccCce
Confidence                 2347888877788876554433322333333789999999988776553

>KOG0321|consensus

Probab=99.55  E-value=4.7e-14  Score=127.23  Aligned_cols=201  Identities=15%  Similarity=0.283  Sum_probs=138.4

Q ss_pred             ecCCCceEEEEEecCCeEEEecCCCccce----eeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEE
Q psy4650          41 TNKDMIEYKISYQESSRVKAFNPIQVATL----ILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQ  116 (381)
Q Consensus        41 ~~~~~~~~~~s~~~d~~v~i~~~~~~~~~----~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~  116 (381)
                      ..++...+|+.+.++|.|.+||.......    .+.....|.+.|..+.|.| ++ ..|++++.|.++++||+++.....
T Consensus        59 ~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wap-ge-~~lVsasGDsT~r~Wdvk~s~l~G  136 (720)
T KOG0321|consen   59 AAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAP-GE-SLLVSASGDSTIRPWDVKTSRLVG  136 (720)
T ss_pred             CCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCC-Cc-eeEEEccCCceeeeeeeccceeec
Confidence            34566779999999999999998653322    2345567999999999999 44 389999999999999999998877


Q ss_pred             E--eccCCCCEEEEEEecCCC-EEEEEeCCCCEEEEeCCCCee--------------------e-------EEEecCCcc
Q psy4650         117 T--LEGHGQNISAVCFHPELP-IVITGSEDGSVRVWHSGTHRL--------------------E-------ISLTYGLER  166 (381)
Q Consensus       117 ~--~~~~~~~v~~~~~~p~~~-~l~s~~~d~~i~vwd~~~~~~--------------------~-------~~~~~~~~~  166 (381)
                      .  +.||.+.|.+++|+|..+ .+++|+.||.+.|||++-...                    .       .....+...
T Consensus       137 ~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~t  216 (720)
T KOG0321|consen  137 GRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNT  216 (720)
T ss_pred             ceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCc
Confidence            6  899999999999999776 889999999999999873220                    0       001122333


Q ss_pred             eEE---EEEcCCCCEEEEEeC-CCeEEEEecCCCceEEEecCCCEEEEEecCceeeccc----ccCCcc-ccccCCceEE
Q psy4650         167 VWT---ISSLKGSNNVAIGYD-EGSVLLKVGREEPAVSMDVNGCKIIWARHSEVQQANL----KTMPEV-FENITAGVVL  237 (381)
Q Consensus       167 v~~---v~~~~~~~~l~~~~~-dg~v~i~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~----~~~~~~-~~~~~dg~~l  237 (381)
                      +.+   +.+.-|...||+++. |+.+++          ||.++....+...........    ..+... +....-|.+|
T Consensus       217 i~ssvTvv~fkDe~tlaSaga~D~~iKV----------WDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L  286 (720)
T KOG0321|consen  217 IFSSVTVVLFKDESTLASAGAADSTIKV----------WDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYL  286 (720)
T ss_pred             eeeeeEEEEEeccceeeeccCCCcceEE----------EeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeE
Confidence            444   555567778888777 999999          676655544432221110000    011110 1222345666


Q ss_pred             eeehHHHHHhccCCCc
Q psy4650         238 TLSVHVTIKYRLDISD  253 (381)
Q Consensus       238 ~~~~~d~~~~~~d~~~  253 (381)
                      ...-.|+.++.|++..
T Consensus       287 ~AsCtD~sIy~ynm~s  302 (720)
T KOG0321|consen  287 FASCTDNSIYFYNMRS  302 (720)
T ss_pred             EEEecCCcEEEEeccc
Confidence            6555588999998754

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.55  E-value=1.4e-12  Score=107.05  Aligned_cols=145  Identities=10%  Similarity=0.129  Sum_probs=102.0

Q ss_pred             cceeeeecCCCceEEEEEec---------CCeEEEecCCCccceeeEeec-cccccEEEEEeeeCCCccEEEEEcCCCeE
Q psy4650          35 TKVDITTNKDMIEYKISYQE---------SSRVKAFNPIQVATLILKTLY-GHEKGVNCVDYYHGGDKPYLISGADDRLV  104 (381)
Q Consensus        35 ~~~~i~~~~~~~~~~~s~~~---------d~~v~i~~~~~~~~~~~~~l~-~h~~~v~~~~~~~~~~~~~l~s~~~d~~v  104 (381)
                      ..+++..++.+..+++....         -+...+|.+..... ....+. ...++|.+++|+|+++.-.++.|..++.|
T Consensus         7 ~~~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~-~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v   85 (194)
T PF08662_consen    7 DDAKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNI-PVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKV   85 (194)
T ss_pred             ceEEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCC-ccceeeccCCCceEEEEECcCCCEEEEEEccCCccc
Confidence            34567777776666655551         22345555533222 222332 23457999999999885334556678899


Q ss_pred             EEEECCCCeEEEEeccCCCCEEEEEEecCCCEEEEEeC---CCCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEE
Q psy4650         105 KIWDYQNKTCVQTLEGHGQNISAVCFHPELPIVITGSE---DGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAI  181 (381)
Q Consensus       105 ~vwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~---d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~  181 (381)
                      .+||++ +..+..+.  ...+..+.|+|+|++++.++.   .|.+.+||..+.+.+....  ...+..++|+|+|+++++
T Consensus        86 ~lyd~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~--~~~~t~~~WsPdGr~~~t  160 (194)
T PF08662_consen   86 TLYDVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE--HSDATDVEWSPDGRYLAT  160 (194)
T ss_pred             EEEcCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc--cCcEEEEEEcCCCCEEEE
Confidence            999997 55566664  457789999999999998875   4669999999888877665  335789999999999999


Q ss_pred             EeCC
Q psy4650         182 GYDE  185 (381)
Q Consensus       182 ~~~d  185 (381)
                      +...
T Consensus       161 a~t~  164 (194)
T PF08662_consen  161 ATTS  164 (194)
T ss_pred             EEec
Confidence            8764

>KOG1445|consensus

Probab=99.54  E-value=2.6e-14  Score=128.89  Aligned_cols=140  Identities=17%  Similarity=0.274  Sum_probs=116.5

Q ss_pred             ecCCeEEEecCCCccceeeEeecc--ccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCC-------eEEEEeccCCC
Q psy4650          53 QESSRVKAFNPIQVATLILKTLYG--HEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNK-------TCVQTLEGHGQ  123 (381)
Q Consensus        53 ~~d~~v~i~~~~~~~~~~~~~l~~--h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~-------~~~~~~~~~~~  123 (381)
                      +..|.|-||++.+.....-..+.+  ....|+.+.|.|-... .|+.++.||.|++|.+..+       .+...+.+|..
T Consensus       600 g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~-rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~e  678 (1012)
T KOG1445|consen  600 GSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDE-RLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGE  678 (1012)
T ss_pred             CCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChH-HeeecccCceEEEEEeccCCCCcccCCcceeeecccc
Confidence            446799999987644333223332  2457999999985543 7999999999999998764       34567889999


Q ss_pred             CEEEEEEecCC-CEEEEEeCCCCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCCCeEEEEec
Q psy4650         124 NISAVCFHPEL-PIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKVG  193 (381)
Q Consensus       124 ~v~~~~~~p~~-~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~~  193 (381)
                      .|.++.|||=. ..|++++.|-+|++||+.+++....+.+|.+.|..++|+|+|+.+|+.+.||.++++..
T Consensus       679 KI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~P  749 (1012)
T KOG1445|consen  679 KITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEP  749 (1012)
T ss_pred             eEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCC
Confidence            99999999944 58899999999999999999999999999999999999999999999999999999543

>KOG2445|consensus

Probab=99.54  E-value=4.2e-13  Score=111.20  Aligned_cols=155  Identities=15%  Similarity=0.192  Sum_probs=120.7

Q ss_pred             eeeee-cCCCceEEEEEecCCeEEEecCCCcc-------ceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEE
Q psy4650          37 VDITT-NKDMIEYKISYQESSRVKAFNPIQVA-------TLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWD  108 (381)
Q Consensus        37 ~~i~~-~~~~~~~~~s~~~d~~v~i~~~~~~~-------~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd  108 (381)
                      ..|.. +|.-+.++++++.|+++.||.-....       -....++..-...|+++.|.|..-+..+++++.||.+|||+
T Consensus        63 ~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYE  142 (361)
T KOG2445|consen   63 WRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYE  142 (361)
T ss_pred             EEEEecCccccceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEe
Confidence            44554 45668899999999999999752111       11234566777899999999987777899999999999997


Q ss_pred             CCC----------------------------------------------------------------C---eEEEEeccC
Q psy4650         109 YQN----------------------------------------------------------------K---TCVQTLEGH  121 (381)
Q Consensus       109 ~~~----------------------------------------------------------------~---~~~~~~~~~  121 (381)
                      ...                                                                +   ..+.++.+|
T Consensus       143 A~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~  222 (361)
T KOG2445|consen  143 APDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDH  222 (361)
T ss_pred             cCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCC
Confidence            643                                                                0   011234578


Q ss_pred             CCCEEEEEEecCCC----EEEEEeCCCCEEEEeCCCC--------------------eeeEEEecCCcceEEEEEcCCCC
Q psy4650         122 GQNISAVCFHPELP----IVITGSEDGSVRVWHSGTH--------------------RLEISLTYGLERVWTISSLKGSN  177 (381)
Q Consensus       122 ~~~v~~~~~~p~~~----~l~s~~~d~~i~vwd~~~~--------------------~~~~~~~~~~~~v~~v~~~~~~~  177 (381)
                      +.+|+.++|.|.-.    .+|+++.|| |+||.+...                    ..+..+..|.+.|+.+.|+-.|.
T Consensus       223 ~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGt  301 (361)
T KOG2445|consen  223 TDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGT  301 (361)
T ss_pred             CCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeee
Confidence            99999999999543    789999999 999998731                    12344677999999999999999


Q ss_pred             EEEEEeCCCeEEEEe
Q psy4650         178 NVAIGYDEGSVLLKV  192 (381)
Q Consensus       178 ~l~~~~~dg~v~i~~  192 (381)
                      .|++.++||++++|-
T Consensus       302 iLsStGdDG~VRLWk  316 (361)
T KOG2445|consen  302 ILSSTGDDGCVRLWK  316 (361)
T ss_pred             EEeecCCCceeeehh
Confidence            999999999999975

>PRK05183 hscA chaperone protein HscA; Provisional

Probab=99.54  E-value=2.1e-15  Score=144.92  Aligned_cols=109  Identities=18%  Similarity=0.223  Sum_probs=91.2

Q ss_pred             cCCCcChhHHHHHHHHHhhhhhhccccceeeEEEecccCCcccccccChHHHHHHHHHHhhhhhhhhHhhhccccceeeE
Q psy4650         249 LDISDSHRSVAKLRAAAETCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIGGLLTSFVQPCMHVLSTLQSSNVF  328 (381)
Q Consensus       249 ~d~~~~~~~~~~l~~~~e~ak~~lS~~~~~~i~~~~l~~g~~~~~~itr~~fe~l~~~l~~~~~~~~~~~Ls~~~~~~~~  328 (381)
                      .+...+++.+.+|+.+||++|+.||...++.+.+..      +...+||++||+++.+++.++.++++++|..   +++.
T Consensus       255 ~~~~~~~~~~~~L~~~ae~aK~~LS~~~~~~i~i~~------~~~~itr~efe~l~~~l~~~~~~~i~~~L~~---a~~~  325 (616)
T PRK05183        255 LSPRLDPEDQRLLLDAARAAKEALSDADSVEVSVAL------WQGEITREQFNALIAPLVKRTLLACRRALRD---AGVE  325 (616)
T ss_pred             CCcCCCHHHHHHHHHHHHHHHHhcCCCceEEEEEec------CCCeEcHHHHHHHHHHHHHHHHHHHHHHHHH---cCCC
Confidence            344457788999999999999999999988888753      2335999999999999999999999999987   5566


Q ss_pred             eeccccCcceEEeecHHHHHHHHHHHHHH----hHHHHHHHH
Q psy4650         329 VESLYDGLDFHHNVSRARFESLIGGLLTS----FVQPIEDVL  366 (381)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~~----~~~~~~~~l  366 (381)
                      .++++.++++||++++|.++++++++|++    .++|-+.+-
T Consensus       326 ~~~i~~ViLvGGssriP~v~~~l~~~fg~~~~~~~npdeaVA  367 (616)
T PRK05183        326 ADEVKEVVMVGGSTRVPLVREAVGEFFGRTPLTSIDPDKVVA  367 (616)
T ss_pred             cccCCEEEEECCcccChHHHHHHHHHhccCcCcCCCchHHHH
Confidence            77888999999999999999999999974    345555443

>KOG2096|consensus

Probab=99.54  E-value=5.2e-13  Score=111.19  Aligned_cols=238  Identities=12%  Similarity=0.126  Sum_probs=157.6

Q ss_pred             hcceeeeecCCCceEEEEEecCCeEEEecCCCcc--ceee--------EeeccccccEEEEEeeeCCCccEEEEEcCCCe
Q psy4650          34 ETKVDITTNKDMIEYKISYQESSRVKAFNPIQVA--TLIL--------KTLYGHEKGVNCVDYYHGGDKPYLISGADDRL  103 (381)
Q Consensus        34 ~~~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~--~~~~--------~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~  103 (381)
                      -+|..+.+.++-..+++++....++++|-.....  ....        +.-+.|.-.+..+.....  ..++++++.|.+
T Consensus       133 dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~--~k~imsas~dt~  210 (420)
T KOG2096|consen  133 DHPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGN--AKYIMSASLDTK  210 (420)
T ss_pred             CCceEEEECCCcceEEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCC--ceEEEEecCCCc
Confidence            4677888999988899999999999999763211  1111        111235555666665443  349999999999


Q ss_pred             EEEEECCCCeEEEEeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCC---CCe-----eeEEEecCCcceEEEEEcCC
Q psy4650         104 VKIWDYQNKTCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSG---THR-----LEISLTYGLERVWTISSLKG  175 (381)
Q Consensus       104 v~vwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~---~~~-----~~~~~~~~~~~v~~v~~~~~  175 (381)
                      |.+|+++ |+.+..+......-+..+.+|+|+++++++..--|++|..-   .|+     .+..+.+|...|...+|+++
T Consensus       211 i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~  289 (420)
T KOG2096|consen  211 ICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNS  289 (420)
T ss_pred             EEEEecC-CceeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCC
Confidence            9999998 88888887655566778899999999999999999999863   222     35678899999999999999


Q ss_pred             CCEEEEEeCCCeEEEEecCCCceEEEecCCCEEEEEecCceeecccccCCccccccCCceEEeeehHHHHHhccCCCcCh
Q psy4650         176 SNNVAIGYDEGSVLLKVGREEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSVHVTIKYRLDISDSH  255 (381)
Q Consensus       176 ~~~l~~~~~dg~v~i~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~d~~~~~~d~~~~~  255 (381)
                      +..+++.+.||.+++|+.+-.    |...-.-.+... ...+...-++.+.-++.+|.|..|+..+...  ..|-..++.
T Consensus       290 S~r~vtvSkDG~wriwdtdVr----Y~~~qDpk~Lk~-g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~--l~~~~se~g  362 (420)
T KOG2096|consen  290 STRAVTVSKDGKWRIWDTDVR----YEAGQDPKILKE-GSAPLHAAGSEPVRLELSPSGDSLAVSFGSD--LKVFASEDG  362 (420)
T ss_pred             cceeEEEecCCcEEEeeccce----EecCCCchHhhc-CCcchhhcCCCceEEEeCCCCcEEEeecCCc--eEEEEcccC
Confidence            999999999999999653210    111000000000 0011122222332367889999999876533  223333344


Q ss_pred             hHHHHHHHHHhhhhhhccccceeeEE
Q psy4650         256 RSVAKLRAAAETCMHVLSTLQSSNVF  281 (381)
Q Consensus       256 ~~~~~l~~~~e~ak~~lS~~~~~~i~  281 (381)
                      +....+...++.....+|........
T Consensus       363 ~~~~~~e~~h~~~Is~is~~~~g~~~  388 (420)
T KOG2096|consen  363 KDYPELEDIHSTTISSISYSSDGKYI  388 (420)
T ss_pred             ccchhHHHhhcCceeeEEecCCCcEE
Confidence            44555555566555555554444333

>KOG1273|consensus

Probab=99.53  E-value=1.4e-13  Score=114.42  Aligned_cols=156  Identities=19%  Similarity=0.252  Sum_probs=113.4

Q ss_pred             EEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEEEeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEE
Q psy4650          81 VNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISL  160 (381)
Q Consensus        81 v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~  160 (381)
                      -.|+.|++.|.  +||.|..||.|.+||+.+...-+.+.+|..+|.+++|+++|+.|++++.|..+.+||+..|.+++.+
T Consensus        26 a~~~~Fs~~G~--~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~ri  103 (405)
T KOG1273|consen   26 AECCQFSRWGD--YLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRI  103 (405)
T ss_pred             cceEEeccCcc--eeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEE
Confidence            78999999888  8999999999999999999988899999999999999999999999999999999999999998888


Q ss_pred             ecCCcceEEEEEcCCCCE--EEEEeCCCeEEEEecCCCceEEEecCCCE-EEEEecCceeecccccCCccccccCCceEE
Q psy4650         161 TYGLERVWTISSLKGSNN--VAIGYDEGSVLLKVGREEPAVSMDVNGCK-IIWARHSEVQQANLKTMPEVFENITAGVVL  237 (381)
Q Consensus       161 ~~~~~~v~~v~~~~~~~~--l~~~~~dg~v~i~~~~~~~~~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l  237 (381)
                      . ..++|+.+.|+|....  +++--....+.           .+...++ .+.....+........+   ..|.+.|.++
T Consensus       104 r-f~spv~~~q~hp~k~n~~va~~~~~sp~v-----------i~~s~~~h~~Lp~d~d~dln~sas~---~~fdr~g~yI  168 (405)
T KOG1273|consen  104 R-FDSPVWGAQWHPRKRNKCVATIMEESPVV-----------IDFSDPKHSVLPKDDDGDLNSSASH---GVFDRRGKYI  168 (405)
T ss_pred             E-ccCccceeeeccccCCeEEEEEecCCcEE-----------EEecCCceeeccCCCcccccccccc---ccccCCCCEE
Confidence            7 5689999999996543  33322222221           2221111 11111111111111111   2356788899


Q ss_pred             eeehHHHHHhccCCCc
Q psy4650         238 TLSVHVTIKYRLDISD  253 (381)
Q Consensus       238 ~~~~~d~~~~~~d~~~  253 (381)
                      .+|...+....++...
T Consensus       169 itGtsKGkllv~~a~t  184 (405)
T KOG1273|consen  169 ITGTSKGKLLVYDAET  184 (405)
T ss_pred             EEecCcceEEEEecch
Confidence            9888877776666543

>KOG1036|consensus

Probab=99.53  E-value=1.3e-13  Score=114.24  Aligned_cols=156  Identities=17%  Similarity=0.200  Sum_probs=121.0

Q ss_pred             cccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEEEeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeee
Q psy4650          78 EKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLE  157 (381)
Q Consensus        78 ~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~  157 (381)
                      .+.|.++.|+|.++  .|+.+++||++++||+........++ |..++.+.+|.+ ...+++|+.||.|+.+|+.++...
T Consensus        13 ~d~IS~v~f~~~~~--~LLvssWDgslrlYdv~~~~l~~~~~-~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~~   88 (323)
T KOG1036|consen   13 EDGISSVKFSPSSS--DLLVSSWDGSLRLYDVPANSLKLKFK-HGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNED   88 (323)
T ss_pred             hhceeeEEEcCcCC--cEEEEeccCcEEEEeccchhhhhhee-cCCceeeeeccC-CceEEEeccCceEEEEEecCCcce
Confidence            57899999997655  67777899999999998886666666 899999999987 457889999999999999988765


Q ss_pred             EEEecCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCC-ceEEEecCCCEEEEEecCceeecccccCCccccccCCceE
Q psy4650         158 ISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKVGREE-PAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGVV  236 (381)
Q Consensus       158 ~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~~~~~-~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~  236 (381)
                      . +..|...+.++.+.+....+++|++|+.|++|+.+.. .+..+|.  ++.+                  ++.+-.|..
T Consensus        89 ~-igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~--~kkV------------------y~~~v~g~~  147 (323)
T KOG1036|consen   89 Q-IGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQ--GKKV------------------YCMDVSGNR  147 (323)
T ss_pred             e-eccCCCceEEEEeeccCCeEEEcccCccEEEEecccccccccccc--CceE------------------EEEeccCCE
Confidence            4 4458899999999999999999999999999554421 1112221  1111                  223346788


Q ss_pred             EeeehHHHHHhccCCCcChhHH
Q psy4650         237 LTLSVHVTIKYRLDISDSHRSV  258 (381)
Q Consensus       237 l~~~~~d~~~~~~d~~~~~~~~  258 (381)
                      |+++..+....+||++....+.
T Consensus       148 LvVg~~~r~v~iyDLRn~~~~~  169 (323)
T KOG1036|consen  148 LVVGTSDRKVLIYDLRNLDEPF  169 (323)
T ss_pred             EEEeecCceEEEEEcccccchh
Confidence            8888888899999998766554

>KOG0322|consensus

Probab=99.52  E-value=6.3e-14  Score=113.68  Aligned_cols=148  Identities=18%  Similarity=0.150  Sum_probs=117.3

Q ss_pred             cCCCceEEEEEecCCeEEEecCCCcc--------ceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCC-
Q psy4650          42 NKDMIEYKISYQESSRVKAFNPIQVA--------TLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNK-  112 (381)
Q Consensus        42 ~~~~~~~~~s~~~d~~v~i~~~~~~~--------~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~-  112 (381)
                      .....-++++|..+|.+.+||.....        .........|.++|.++.|.+.-+  .=++|+.+..+.+|.+... 
T Consensus       161 ~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~--rGisgga~dkl~~~Sl~~s~  238 (323)
T KOG0322|consen  161 ACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCD--RGISGGADDKLVMYSLNHST  238 (323)
T ss_pred             cccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhc--CCcCCCccccceeeeecccc
Confidence            33435577889999999999996521        123334557999999999976333  3467888888889987643 


Q ss_pred             -e--EEEEeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCCCeEE
Q psy4650         113 -T--CVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVL  189 (381)
Q Consensus       113 -~--~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~  189 (381)
                       .  ....+.-...+|..+...||++.+|++|+|+.||||..++..++..+..|++.|++++|+|+...+|+++.|+.|.
T Consensus       239 gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rIS  318 (323)
T KOG0322|consen  239 GSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARIS  318 (323)
T ss_pred             CcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEE
Confidence             1  1112222234688999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EE
Q psy4650         190 LK  191 (381)
Q Consensus       190 i~  191 (381)
                      +|
T Consensus       319 LW  320 (323)
T KOG0322|consen  319 LW  320 (323)
T ss_pred             ee
Confidence            95

>KOG1188|consensus

Probab=99.52  E-value=2.2e-13  Score=114.42  Aligned_cols=144  Identities=17%  Similarity=0.198  Sum_probs=115.4

Q ss_pred             eEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEE--EEeccCC-C
Q psy4650          47 EYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCV--QTLEGHG-Q  123 (381)
Q Consensus        47 ~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~--~~~~~~~-~  123 (381)
                      ..++++-..|.|++||+.+  .+.+..+++|...+..++|..+.....+.+|+.||+|++||+++....  ..+..+. .
T Consensus        41 ~~vav~lSngsv~lyd~~t--g~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~  118 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGT--GQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGT  118 (376)
T ss_pred             eeEEEEecCCeEEEEeccc--hhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCC
Confidence            4567777889999999974  677889999999999999987545558999999999999999886543  3444454 4


Q ss_pred             CEEEEEEecCCCEEEEEeC----CCCEEEEeCCCCee-eEEE-ecCCcceEEEEEcCC-CCEEEEEeCCCeEEEEe
Q psy4650         124 NISAVCFHPELPIVITGSE----DGSVRVWHSGTHRL-EISL-TYGLERVWTISSLKG-SNNVAIGYDEGSVLLKV  192 (381)
Q Consensus       124 ~v~~~~~~p~~~~l~s~~~----d~~i~vwd~~~~~~-~~~~-~~~~~~v~~v~~~~~-~~~l~~~~~dg~v~i~~  192 (381)
                      +-.|++.+..+..+++|..    +-.|.+||++..+. +..+ ..|.+.|+++.|+|. .+.|++||.||.+-+++
T Consensus       119 ~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD  194 (376)
T KOG1188|consen  119 PFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFD  194 (376)
T ss_pred             cceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeee
Confidence            5677777767778887743    77899999998766 5554 458999999999996 56899999999999943

>KOG1445|consensus

Probab=99.51  E-value=6.6e-14  Score=126.30  Aligned_cols=150  Identities=15%  Similarity=0.116  Sum_probs=117.9

Q ss_pred             cceeeeecCCCceEEEEEecCCeEEEecCCC-----ccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEEC
Q psy4650          35 TKVDITTNKDMIEYKISYQESSRVKAFNPIQ-----VATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDY  109 (381)
Q Consensus        35 ~~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~-----~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~  109 (381)
                      ...++.+++=..+-|+.+.+||.|++|.+..     ........+.+|.+.|+++.|+|-... .|++++.|-+|++||+
T Consensus       629 ~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAad-vLa~asyd~Ti~lWDl  707 (1012)
T KOG1445|consen  629 LVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAAD-VLAVASYDSTIELWDL  707 (1012)
T ss_pred             eeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhh-Hhhhhhccceeeeeeh
Confidence            3456667765567789999999999998743     223345678899999999999997653 8999999999999999


Q ss_pred             CCCeEEEEeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCee-eEEEecC-CcceEEEEEcCCCCEEEEEeCC
Q psy4650         110 QNKTCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRL-EISLTYG-LERVWTISSLKGSNNVAIGYDE  185 (381)
Q Consensus       110 ~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~-~~~~~~~-~~~v~~v~~~~~~~~l~~~~~d  185 (381)
                      .++.....+.+|++.|..++|+|+|+.+|+.+.||++++|..+++.. ++.-++. ..+-..+.|.-+|+++++.+.|
T Consensus       708 ~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfd  785 (1012)
T KOG1445|consen  708 ANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFD  785 (1012)
T ss_pred             hhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEeccc
Confidence            99999999999999999999999999999999999999999886643 3322221 1223456677777777666544

>KOG2919|consensus

Probab=99.51  E-value=1.5e-13  Score=114.63  Aligned_cols=197  Identities=16%  Similarity=0.168  Sum_probs=148.5

Q ss_pred             CCCceEEEEEecCCeEEEecCCCccceeeEeecccccc---EEEEEeeeCCCccEEEEEcCCCeEEEEEC-CCCeE--EE
Q psy4650          43 KDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKG---VNCVDYYHGGDKPYLISGADDRLVKIWDY-QNKTC--VQ  116 (381)
Q Consensus        43 ~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~---v~~~~~~~~~~~~~l~s~~~d~~v~vwd~-~~~~~--~~  116 (381)
                      +....++++.+.+.-|++||..+.+.+.......|.+.   ..|++|+|||+  +| -++....|+++|+ ++|..  ..
T Consensus       120 qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGe--ql-faGykrcirvFdt~RpGr~c~vy  196 (406)
T KOG2919|consen  120 QPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGE--QL-FAGYKRCIRVFDTSRPGRDCPVY  196 (406)
T ss_pred             CCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCC--eE-eecccceEEEeeccCCCCCCcch
Confidence            34477888999999999999987655554444556654   46899999998  45 4567899999999 45531  22


Q ss_pred             Eec-----cCCCCEEEEEEecCCC-EEEEEeCCCCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeC-CCeEE
Q psy4650         117 TLE-----GHGQNISAVCFHPELP-IVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYD-EGSVL  189 (381)
Q Consensus       117 ~~~-----~~~~~v~~~~~~p~~~-~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~-dg~v~  189 (381)
                      ...     +..+-+.|++|+|... .++.|+-...+-|+.-..+.++..+-+|.+.|+.++|.++|+.|.+|.. +..|.
T Consensus       197 ~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl  276 (406)
T KOG2919|consen  197 TTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKIL  276 (406)
T ss_pred             hhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEE
Confidence            222     2356788999999665 8888998999999999999999999999999999999999999888864 34444


Q ss_pred             EEecCCCceEEEecC-CCEEEEEecCceeecccccCCccccccCCceEEeeehHHHHHhccCCCcCh
Q psy4650         190 LKVGREEPAVSMDVN-GCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSVHVTIKYRLDISDSH  255 (381)
Q Consensus       190 i~~~~~~~~~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~d~~~~~~d~~~~~  255 (381)
                                .||.+ ...++|.+..+...++-.   ..|+..|+|++|+.++.++.+.+||+..-.
T Consensus       277 ----------~WDiR~~~~pv~~L~rhv~~TNQR---I~FDld~~~~~LasG~tdG~V~vwdlk~~g  330 (406)
T KOG2919|consen  277 ----------CWDIRYSRDPVYALERHVGDTNQR---ILFDLDPKGEILASGDTDGSVRVWDLKDLG  330 (406)
T ss_pred             ----------EEeehhccchhhhhhhhccCccce---EEEecCCCCceeeccCCCccEEEEecCCCC
Confidence                      48875 455777766554322211   115667999999999999999999987643

>KOG1538|consensus

Probab=99.51  E-value=1.1e-13  Score=125.67  Aligned_cols=151  Identities=21%  Similarity=0.344  Sum_probs=119.6

Q ss_pred             cceeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeE
Q psy4650          35 TKVDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTC  114 (381)
Q Consensus        35 ~~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~  114 (381)
                      -.+++.+.|++...+++++.  .+.+||+.+  ...+++++||.+.|.|++|+.+|.  .++||+.|+.|.+|..+-...
T Consensus        14 ci~d~afkPDGsqL~lAAg~--rlliyD~nd--G~llqtLKgHKDtVycVAys~dGk--rFASG~aDK~VI~W~~klEG~   87 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAAGS--RLLVYDTSD--GTLLQPLKGHKDTVYCVAYAKDGK--RFASGSADKSVIIWTSKLEGI   87 (1081)
T ss_pred             chheeEECCCCceEEEecCC--EEEEEeCCC--cccccccccccceEEEEEEccCCc--eeccCCCceeEEEecccccce
Confidence            45688899999988888765  899999974  567899999999999999999988  799999999999998754332


Q ss_pred             EEEeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCCCeEEEEecC
Q psy4650         115 VQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKVGR  194 (381)
Q Consensus       115 ~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~~~  194 (381)
                       ..+ .|++.|.|+.|+|-...+++|+-. ..-+|....... .. .....++.+.+|..+|.+++.|..||++.+.+..
T Consensus        88 -LkY-SH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~V-~K-~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~  162 (1081)
T KOG1538|consen   88 -LKY-SHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKSV-SK-HKSSSRIICCSWTNDGQYLALGMFNGTISIRNKN  162 (1081)
T ss_pred             -eee-ccCCeeeEeecCchHHHhhhcchh-hccccChhhhhH-Hh-hhhheeEEEeeecCCCcEEEEeccCceEEeecCC
Confidence             223 489999999999999999998754 355776543221 11 1134678899999999999999999999996543


Q ss_pred             CC
Q psy4650         195 EE  196 (381)
Q Consensus       195 ~~  196 (381)
                      ++
T Consensus       163 gE  164 (1081)
T KOG1538|consen  163 GE  164 (1081)
T ss_pred             CC
Confidence            33

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.49  E-value=9.9e-12  Score=110.20  Aligned_cols=202  Identities=15%  Similarity=0.134  Sum_probs=133.1

Q ss_pred             ceeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEE
Q psy4650          36 KVDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCV  115 (381)
Q Consensus        36 ~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~  115 (381)
                      +..+...+++..++++++.++.+++||+..  ...+..+..+.. +..+.|+|++.. ++++++.++.+++||+.++..+
T Consensus        33 ~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~--~~~~~~~~~~~~-~~~~~~~~~g~~-l~~~~~~~~~l~~~d~~~~~~~  108 (300)
T TIGR03866        33 PRGITLSKDGKLLYVCASDSDTIQVIDLAT--GEVIGTLPSGPD-PELFALHPNGKI-LYIANEDDNLVTVIDIETRKVL  108 (300)
T ss_pred             CCceEECCCCCEEEEEECCCCeEEEEECCC--CcEEEeccCCCC-ccEEEECCCCCE-EEEEcCCCCeEEEEECCCCeEE
Confidence            344666666555557778899999999864  334455555443 567889998762 4456677899999999988877


Q ss_pred             EEeccCCCCEEEEEEecCCCEEEEEeCCC-CEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEE-eCCCeEEEEec
Q psy4650         116 QTLEGHGQNISAVCFHPELPIVITGSEDG-SVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIG-YDEGSVLLKVG  193 (381)
Q Consensus       116 ~~~~~~~~~v~~~~~~p~~~~l~s~~~d~-~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~-~~dg~v~i~~~  193 (381)
                      ..+..+ ..+.+++|+|++..+++++.++ .+.+||..++........ .....++.|+|+|..++.+ ..++.+.+   
T Consensus       109 ~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~i---  183 (300)
T TIGR03866       109 AEIPVG-VEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLV-DQRPRFAEFTADGKELWVSSEIGGTVSV---  183 (300)
T ss_pred             eEeeCC-CCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEc-CCCccEEEECCCCCEEEEEcCCCCEEEE---
Confidence            777533 3468899999999998887764 567889988877665542 2455789999999988555 45888988   


Q ss_pred             CCCceEEEecCCCEEEEEecCceeeccccc-CCccccccCCceEEeeeh-HHHHHhccCCCc
Q psy4650         194 REEPAVSMDVNGCKIIWARHSEVQQANLKT-MPEVFENITAGVVLTLSV-HVTIKYRLDISD  253 (381)
Q Consensus       194 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~dg~~l~~~~-~d~~~~~~d~~~  253 (381)
                             ||..++..+-............. ....+.++|+|..++++. .+.....||...
T Consensus       184 -------~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~  238 (300)
T TIGR03866       184 -------IDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKT  238 (300)
T ss_pred             -------EEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCC
Confidence                   66666654433221110000000 111256789998765543 334566777643

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG1523|consensus

Probab=99.49  E-value=4.6e-13  Score=111.58  Aligned_cols=221  Identities=14%  Similarity=0.054  Sum_probs=156.0

Q ss_pred             ceeeeecCCCceEEEEEecCCeEEEecCCCcc-ceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCC-C-
Q psy4650          36 KVDITTNKDMIEYKISYQESSRVKAFNPIQVA-TLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQN-K-  112 (381)
Q Consensus        36 ~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~-~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~-~-  112 (381)
                      .+....+++.. .++.+-....+.||...... -...++++.|...|+++.|+|..+  .|++|+.|..-.+|.... + 
T Consensus        13 itchAwn~drt-~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~sn--rIvtcs~drnayVw~~~~~~~   89 (361)
T KOG1523|consen   13 ITCHAWNSDRT-QIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSN--RIVTCSHDRNAYVWTQPSGGT   89 (361)
T ss_pred             eeeeeecCCCc-eEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCC--ceeEccCCCCccccccCCCCe
Confidence            34555666655 44555566689999876544 567899999999999999999776  699999999999999843 3 


Q ss_pred             -eEEEEeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeE----EEecCCcceEEEEEcCCCCEEEEEeCCCe
Q psy4650         113 -TCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEI----SLTYGLERVWTISSLKGSNNVAIGYDEGS  187 (381)
Q Consensus       113 -~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~----~~~~~~~~v~~v~~~~~~~~l~~~~~dg~  187 (381)
                       ++...+..+...++++.|+|.+..++.|+..+.|.||=+.....-.    .-+.+.+.|.++.|+|++-+++.|+.|+.
T Consensus        90 WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k  169 (361)
T KOG1523|consen   90 WKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGK  169 (361)
T ss_pred             eccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCcc
Confidence             3556677788899999999999999999999999999876544322    12335678999999999999999999999


Q ss_pred             EEEEecCCCceEEEecCCCEEEEEecCceeec-----ccccCCccccccCCceEEeeehHHHHHhccCCCcChhHHHHHH
Q psy4650         188 VLLKVGREEPAVSMDVNGCKIIWARHSEVQQA-----NLKTMPEVFENITAGVVLTLSVHVTIKYRLDISDSHRSVAKLR  262 (381)
Q Consensus       188 v~i~~~~~~~~~~~d~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~dg~~l~~~~~d~~~~~~d~~~~~~~~~~l~  262 (381)
                      ++++..--   ...|.......|.........     ...+......|+|+|..|+..+.|......|.......++.+.
T Consensus       170 ~rVfSayI---K~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~~~  246 (361)
T KOG1523|consen  170 CRVFSAYI---KGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQSVA  246 (361)
T ss_pred             eeEEEEee---eccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchhccchh
Confidence            99954211   011111111222221111100     1111122268899999999999999888877766544444443

>KOG1007|consensus

Probab=99.49  E-value=5.8e-13  Score=109.47  Aligned_cols=152  Identities=15%  Similarity=0.270  Sum_probs=118.4

Q ss_pred             eeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeec-----cccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCC
Q psy4650          37 VDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLY-----GHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQN  111 (381)
Q Consensus        37 ~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~-----~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~  111 (381)
                      .++.+.|+...++ + -.+..|.+|++.+.+.. ...+.     +|....++-+|+|..+.+.+++. .|+++..||+++
T Consensus       127 ~cvew~Pns~kla-s-m~dn~i~l~~l~ess~~-vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT  202 (370)
T KOG1007|consen  127 NCVEWEPNSDKLA-S-MDDNNIVLWSLDESSKI-VAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRT  202 (370)
T ss_pred             eeEEEcCCCCeeE-E-eccCceEEEEcccCcch-heeecccccccccceecccccCCCCccceEEEe-CCCcEEEEEccc
Confidence            4566777654433 3 23789999999764332 22222     36677888999996665566664 589999999998


Q ss_pred             CeEEEEe-ccCCCCEEEEEEecCCC-EEEEEeCCCCEEEEeCCC-CeeeEEEecCCcceEEEEEcCC-CCEEEEEeCCCe
Q psy4650         112 KTCVQTL-EGHGQNISAVCFHPELP-IVITGSEDGSVRVWHSGT-HRLEISLTYGLERVWTISSLKG-SNNVAIGYDEGS  187 (381)
Q Consensus       112 ~~~~~~~-~~~~~~v~~~~~~p~~~-~l~s~~~d~~i~vwd~~~-~~~~~~~~~~~~~v~~v~~~~~-~~~l~~~~~dg~  187 (381)
                      ......+ ..|...|..+.|+|+.. +|++||.||.|++||.+. ..++.++.+|...|++|.|+|. ..++.+|+.|..
T Consensus       203 ~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~  282 (370)
T KOG1007|consen  203 MKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSA  282 (370)
T ss_pred             hhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCce
Confidence            8776666 45888899999999887 789999999999999985 4578899999999999999996 467888999999


Q ss_pred             EEEEe
Q psy4650         188 VLLKV  192 (381)
Q Consensus       188 v~i~~  192 (381)
                      |.+|+
T Consensus       283 V~Lsc  287 (370)
T KOG1007|consen  283 VNLSC  287 (370)
T ss_pred             eEEEe
Confidence            99865

>KOG2919|consensus

Probab=99.48  E-value=9.6e-13  Score=109.83  Aligned_cols=153  Identities=17%  Similarity=0.220  Sum_probs=118.9

Q ss_pred             ceeeeecCCCceEEEEEecCCeEEEecCCCcccee-eEe-----eccccccEEEEEeeeCCCccEEEEEcCCCeEEEEEC
Q psy4650          36 KVDITTNKDMIEYKISYQESSRVKAFNPIQVATLI-LKT-----LYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDY  109 (381)
Q Consensus        36 ~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~-~~~-----l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~  109 (381)
                      -..+.+.++ +++|++ +....|++||.......+ ...     -.|..+-+.|++|+|-..+ .++.|+.-.++-++.-
T Consensus       161 AhsL~Fs~D-Geqlfa-GykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~-~~a~gsY~q~~giy~~  237 (406)
T KOG2919|consen  161 AHSLQFSPD-GEQLFA-GYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSK-TLAVGSYGQRVGIYND  237 (406)
T ss_pred             heeEEecCC-CCeEee-cccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCc-ceeeecccceeeeEec
Confidence            345677777 446665 455799999984422221 111     2244678899999996653 7899999999999998


Q ss_pred             CCCeEEEEeccCCCCEEEEEEecCCCEEEEEeC-CCCEEEEeCCC-CeeeEEEecCCc-ceEEEEEc--CCCCEEEEEeC
Q psy4650         110 QNKTCVQTLEGHGQNISAVCFHPELPIVITGSE-DGSVRVWHSGT-HRLEISLTYGLE-RVWTISSL--KGSNNVAIGYD  184 (381)
Q Consensus       110 ~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~-d~~i~vwd~~~-~~~~~~~~~~~~-~v~~v~~~--~~~~~l~~~~~  184 (381)
                      ..+.++..+.+|.++|+.+.|+++|..|.+|.. |-.|..||++. +.++..+..|.. .-..|.|.  |++.+|++|+.
T Consensus       238 ~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~t  317 (406)
T KOG2919|consen  238 DGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDT  317 (406)
T ss_pred             CCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCC
Confidence            888999999999999999999999999999876 77899999984 556777776655 44455554  88999999999


Q ss_pred             CCeEEEE
Q psy4650         185 EGSVLLK  191 (381)
Q Consensus       185 dg~v~i~  191 (381)
                      ||.|++|
T Consensus       318 dG~V~vw  324 (406)
T KOG2919|consen  318 DGSVRVW  324 (406)
T ss_pred             CccEEEE
Confidence            9999993

>KOG0771|consensus

Probab=99.46  E-value=5.5e-13  Score=114.99  Aligned_cols=194  Identities=11%  Similarity=0.097  Sum_probs=132.4

Q ss_pred             eeeecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEEE
Q psy4650          38 DITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQT  117 (381)
Q Consensus        38 ~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~  117 (381)
                      +++.....+..+++++.||++|+|+..  ....+.....|.+.|.++.|+||+.  +|++-+.| ..+||+..++..+..
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~P--s~~t~l~e~~~~~eV~DL~FS~dgk--~lasig~d-~~~VW~~~~g~~~a~  222 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWP--SMLTILEEIAHHAEVKDLDFSPDGK--FLASIGAD-SARVWSVNTGAALAR  222 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecC--cchhhhhhHhhcCccccceeCCCCc--EEEEecCC-ceEEEEeccCchhhh
Confidence            444444445689999999999999932  2344556678999999999999987  89999999 999999999966554


Q ss_pred             ecc--CCCCEEEEEEecCC-----CEEEEEeCCCCEEEEeCCCCee-----eEEEecCCcceEEEEEcCCCCEEEEEeCC
Q psy4650         118 LEG--HGQNISAVCFHPEL-----PIVITGSEDGSVRVWHSGTHRL-----EISLTYGLERVWTISSLKGSNNVAIGYDE  185 (381)
Q Consensus       118 ~~~--~~~~v~~~~~~p~~-----~~l~s~~~d~~i~vwd~~~~~~-----~~~~~~~~~~v~~v~~~~~~~~l~~~~~d  185 (381)
                      ...  -......+.|+.++     ...+....-+.|+.||......     ..........+++++.+++|+++|.|+.|
T Consensus       223 ~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~d  302 (398)
T KOG0771|consen  223 KTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMD  302 (398)
T ss_pred             cCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccC
Confidence            431  12234556676665     2333444566777777653222     11111234579999999999999999999


Q ss_pred             CeEEEEecCCCceEEEecCCCEEEEEecCceeecccccCCccccccCCceEEeeehHHHHHhccCC
Q psy4650         186 GSVLLKVGREEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSVHVTIKYRLDI  251 (381)
Q Consensus       186 g~v~i~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~d~~~~~~d~  251 (381)
                      |.|.+          ++..+.+.+.-... .+...+.+    ++|+||.+.+...+.+.+.....+
T Consensus       303 GsVai----------~~~~~lq~~~~vk~-aH~~~VT~----ltF~Pdsr~~~svSs~~~~~v~~l  353 (398)
T KOG0771|consen  303 GSVAI----------YDAKSLQRLQYVKE-AHLGFVTG----LTFSPDSRYLASVSSDNEAAVTKL  353 (398)
T ss_pred             CcEEE----------EEeceeeeeEeehh-hheeeeee----EEEcCCcCcccccccCCceeEEEE
Confidence            99999          88776665543322 12222221    578899888887777665554433

>KOG0649|consensus

Probab=99.46  E-value=6e-12  Score=101.17  Aligned_cols=192  Identities=13%  Similarity=0.136  Sum_probs=134.2

Q ss_pred             ceEEEEEecCCeEEEecCCC--------ccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCe----
Q psy4650          46 IEYKISYQESSRVKAFNPIQ--------VATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKT----  113 (381)
Q Consensus        46 ~~~~~s~~~d~~v~i~~~~~--------~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~----  113 (381)
                      ..|+++|+.+|.|-++.+..        .....+...++|.++|+.++|+.  .  +|++|+ ||.|+-|......    
T Consensus        22 ~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d--~--~Lls~g-dG~V~gw~W~E~~es~~   96 (325)
T KOG0649|consen   22 KQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHD--D--FLLSGG-DGLVYGWEWNEEEESLA   96 (325)
T ss_pred             ceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeeh--h--heeecc-CceEEEeeehhhhhhcc
Confidence            56899999999999998732        12334556689999999999972  2  577766 5999988664321    


Q ss_pred             --EEEEec--cC-----CCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeC
Q psy4650         114 --CVQTLE--GH-----GQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYD  184 (381)
Q Consensus       114 --~~~~~~--~~-----~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~  184 (381)
                        .+...+  -|     ...|+++...|...-++.++.|+.+.-||+.+|+..+++++|++.+.++.-......+.+|+.
T Consensus        97 ~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~E  176 (325)
T KOG0649|consen   97 TKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAE  176 (325)
T ss_pred             chhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCC
Confidence              111111  12     235789999998776777778999999999999999999999999999998666678899999


Q ss_pred             CCeEEEEecCCCceEEEecCCCEEEEEecCceeecccccC-C-ccccccCCceEEeeehHHHHHhccCCCc
Q psy4650         185 EGSVLLKVGREEPAVSMDVNGCKIIWARHSEVQQANLKTM-P-EVFENITAGVVLTLSVHVTIKYRLDISD  253 (381)
Q Consensus       185 dg~v~i~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~dg~~l~~~~~d~~~~~~d~~~  253 (381)
                      ||++++          ||.++++.+..+........+.-+ . +..+..-+..+++++... ....|.++.
T Consensus       177 DGtvRv----------Wd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgGp-~lslwhLrs  236 (325)
T KOG0649|consen  177 DGTVRV----------WDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGGP-KLSLWHLRS  236 (325)
T ss_pred             CccEEE----------EeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecCCC-ceeEEeccC
Confidence            999999          888888877666544333322211 1 112223344555555543 344565543

>KOG0307|consensus

Probab=99.46  E-value=1.5e-13  Score=131.85  Aligned_cols=190  Identities=16%  Similarity=0.176  Sum_probs=132.4

Q ss_pred             eEEEEEecCCeEEEecCCCc----cceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEEEec--c
Q psy4650          47 EYKISYQESSRVKAFNPIQV----ATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE--G  120 (381)
Q Consensus        47 ~~~~s~~~d~~v~i~~~~~~----~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~--~  120 (381)
                      .+++.|..||.|.+|++...    +...+.+...|++.|..+.|++.+. ++||+|+.||.|.|||+...+.-....  .
T Consensus        81 GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~-nlLASGa~~geI~iWDlnn~~tP~~~~~~~  159 (1049)
T KOG0307|consen   81 GLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQG-NLLASGADDGEILIWDLNKPETPFTPGSQA  159 (1049)
T ss_pred             ceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCC-ceeeccCCCCcEEEeccCCcCCCCCCCCCC
Confidence            47999999999999999642    2345667788999999999999766 499999999999999998765444432  2


Q ss_pred             CCCCEEEEEEecCCC-EEEEEeCCCCEEEEeCCCCeeeEEEecCCc--ceEEEEEcCCCC-EEEEEeCCC---eEEEEec
Q psy4650         121 HGQNISAVCFHPELP-IVITGSEDGSVRVWHSGTHRLEISLTYGLE--RVWTISSLKGSN-NVAIGYDEG---SVLLKVG  193 (381)
Q Consensus       121 ~~~~v~~~~~~p~~~-~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~--~v~~v~~~~~~~-~l~~~~~dg---~v~i~~~  193 (381)
                      ..+.|.+++|+..-. .|++++.+|.+.|||++..+.+..+..+..  .+..+.|+|++. .+++++.|.   .|.+   
T Consensus       160 ~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~Pviql---  236 (1049)
T KOG0307|consen  160 PPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQL---  236 (1049)
T ss_pred             CcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEe---
Confidence            356899999998655 788999999999999999888777765443  578999999864 566665543   3444   


Q ss_pred             CCCceEEEecCCC-EEEEEecCceeecccccCCccccccCC-ceEEeeehHHHHHhccCCCc
Q psy4650         194 REEPAVSMDVNGC-KIIWARHSEVQQANLKTMPEVFENITA-GVVLTLSVHVTIKYRLDISD  253 (381)
Q Consensus       194 ~~~~~~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d-g~~l~~~~~d~~~~~~d~~~  253 (381)
                             ||.+-. .++-..  +.+...+.+    ++|.+. ..++.+...|+++..|+...
T Consensus       237 -------WDlR~assP~k~~--~~H~~Gils----lsWc~~D~~lllSsgkD~~ii~wN~~t  285 (1049)
T KOG0307|consen  237 -------WDLRFASSPLKIL--EGHQRGILS----LSWCPQDPRLLLSSGKDNRIICWNPNT  285 (1049)
T ss_pred             -------ecccccCCchhhh--cccccceee----eccCCCCchhhhcccCCCCeeEecCCC
Confidence                   553211 111000  001111111    344443 37777777788877777654

>KOG1009|consensus

Probab=99.45  E-value=6.8e-13  Score=113.83  Aligned_cols=154  Identities=18%  Similarity=0.259  Sum_probs=120.8

Q ss_pred             cccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCC---------eEEEEeccCCCCEEEEEEecCCCEEEEEeCCCCEEE
Q psy4650          78 EKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNK---------TCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRV  148 (381)
Q Consensus        78 ~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~---------~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~v  148 (381)
                      ..+|.++.|.++... .++||+.|..|++|.+..+         .....+..|...|+++.|+|+|..+|||+.+|.+.+
T Consensus        13 ~~pv~s~dfq~n~~~-~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~l   91 (434)
T KOG1009|consen   13 HEPVYSVDFQKNSLN-KLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFL   91 (434)
T ss_pred             CCceEEEEeccCccc-ceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEE
Confidence            467899999876553 8999999999999987543         234567789999999999999999999999999999


Q ss_pred             EeCC--------C--------CeeeEEEecCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCceEEEecCCCEEEEEe
Q psy4650         149 WHSG--------T--------HRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKVGREEPAVSMDVNGCKIIWAR  212 (381)
Q Consensus       149 wd~~--------~--------~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~~~~~~~~~~d~~~~~~~~~~  212 (381)
                      |-..        +        ......+.+|...+..++|+|++.++++++.|..+++          ||.+.|......
T Consensus        92 Wk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l----------~Dv~~G~l~~~~  161 (434)
T KOG1009|consen   92 WKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRL----------WDVHAGQLLAIL  161 (434)
T ss_pred             EEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEE----------EEeccceeEeec
Confidence            9766        2        2234456789999999999999999999999999999          888888877665


Q ss_pred             cCceeecccccCCccccccCCceEEeeehHHHHHhc
Q psy4650         213 HSEVQQANLKTMPEVFENITAGVVLTLSVHVTIKYR  248 (381)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~d~~~~~  248 (381)
                      ..+.+..+.      ++|.|-++++++-+.+...+.
T Consensus       162 ~dh~~yvqg------vawDpl~qyv~s~s~dr~~~~  191 (434)
T KOG1009|consen  162 DDHEHYVQG------VAWDPLNQYVASKSSDRHPEG  191 (434)
T ss_pred             cccccccce------eecchhhhhhhhhccCcccce
Confidence            554433322      345577777777666653333

>KOG0644|consensus

Probab=99.44  E-value=1.1e-13  Score=128.39  Aligned_cols=108  Identities=19%  Similarity=0.425  Sum_probs=95.9

Q ss_pred             ceeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEE
Q psy4650          36 KVDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCV  115 (381)
Q Consensus        36 ~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~  115 (381)
                      .|++.++.. +.|+++|++|..++||..+  ...++..+.||.+.|+.++.+....  +++++|.|..|++|.+..+.++
T Consensus       193 Vyca~fDrt-g~~Iitgsdd~lvKiwS~e--t~~~lAs~rGhs~ditdlavs~~n~--~iaaaS~D~vIrvWrl~~~~pv  267 (1113)
T KOG0644|consen  193 VYCAIFDRT-GRYIITGSDDRLVKIWSME--TARCLASCRGHSGDITDLAVSSNNT--MIAAASNDKVIRVWRLPDGAPV  267 (1113)
T ss_pred             eeeeeeccc-cceEeecCccceeeeeecc--chhhhccCCCCccccchhccchhhh--hhhhcccCceEEEEecCCCchH
Confidence            566666654 7799999999999999976  5678899999999999999987544  7899999999999999999999


Q ss_pred             EEeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCC
Q psy4650         116 QTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSG  152 (381)
Q Consensus       116 ~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~  152 (381)
                      ..+.+|++.|++++|+|-.    +.+.||++++||.+
T Consensus       268 svLrghtgavtaiafsP~~----sss~dgt~~~wd~r  300 (1113)
T KOG0644|consen  268 SVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDAR  300 (1113)
T ss_pred             HHHhccccceeeeccCccc----cCCCCCceEecccc
Confidence            9999999999999999964    67889999999987

>KOG0642|consensus

Probab=99.43  E-value=2.5e-12  Score=114.72  Aligned_cols=156  Identities=22%  Similarity=0.254  Sum_probs=123.6

Q ss_pred             cceeeeecCCCceEEEEEecCCeEEEec------CCCc--cceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEE
Q psy4650          35 TKVDITTNKDMIEYKISYQESSRVKAFN------PIQV--ATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKI  106 (381)
Q Consensus        35 ~~~~i~~~~~~~~~~~s~~~d~~v~i~~------~~~~--~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~v  106 (381)
                      .|+--+.-+..++.+++|+-||+|+.|+      +...  .......+.||++.|+.+++|+..+  .|++|+.||+++.
T Consensus       345 gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~--~Llscs~DgTvr~  422 (577)
T KOG0642|consen  345 GPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKD--RLLSCSSDGTVRL  422 (577)
T ss_pred             CceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeeccccc--ceeeecCCceEEe
Confidence            3433333444578999999999999994      3221  2234567899999999999998666  6999999999999


Q ss_pred             EECCCCeE--------------------------------------------EEEecc--C-----CCCEEEEEEecCCC
Q psy4650         107 WDYQNKTC--------------------------------------------VQTLEG--H-----GQNISAVCFHPELP  135 (381)
Q Consensus       107 wd~~~~~~--------------------------------------------~~~~~~--~-----~~~v~~~~~~p~~~  135 (381)
                      |+.....+                                            +..+..  -     ...+..+.++|.+.
T Consensus       423 w~~~~~~~~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~  502 (577)
T KOG0642|consen  423 WEPTEESPCTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTAD  502 (577)
T ss_pred             eccCCcCccccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCC
Confidence            98764322                                            000100  0     12356788899999


Q ss_pred             EEEEEeCCCCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCCCeEEEEe
Q psy4650         136 IVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKV  192 (381)
Q Consensus       136 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~  192 (381)
                      ...++..|+.|+++|..++..+.....|...++++++.|+|.+|.+++.|+.+++|.
T Consensus       503 ~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~k  559 (577)
T KOG0642|consen  503 ITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWK  559 (577)
T ss_pred             eeEecccCCceecccccccccchheeeccceecceeecCCCceEEeecCCceeehhh
Confidence            999999999999999999999999999999999999999999999999999999944

>KOG1063|consensus

Probab=99.43  E-value=4.2e-12  Score=115.87  Aligned_cols=199  Identities=15%  Similarity=0.144  Sum_probs=151.3

Q ss_pred             eeeeecCCCceEEEEEecCCeEEEecCCCc-cceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCC----
Q psy4650          37 VDITTNKDMIEYKISYQESSRVKAFNPIQV-ATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQN----  111 (381)
Q Consensus        37 ~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~-~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~----  111 (381)
                      +.....++ ..++++-+..|..++|-..+. .-.....+.||.+.|.+++|+|.|+  +|.+.|.|.+-|++-.-.    
T Consensus       320 ~g~lw~~n-~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGe--flLsvs~DQTTRlFa~wg~q~~  396 (764)
T KOG1063|consen  320 WGGLWSPN-SNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGE--FLLSVSLDQTTRLFARWGRQQE  396 (764)
T ss_pred             eeEEEcCC-CCEEEEecccCcEEEEeccCccceeeccccccccccceeeeecCCCC--EEEEeccccceeeecccccccc
Confidence            44455555 467888899999999983321 1123345679999999999999888  899999999888864320    


Q ss_pred             --------------------------------------------------------------------------------
Q psy4650         112 --------------------------------------------------------------------------------  111 (381)
Q Consensus       112 --------------------------------------------------------------------------------  111 (381)
                                                                                                      
T Consensus       397 wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~  476 (764)
T KOG1063|consen  397 WHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFP  476 (764)
T ss_pred             eeeecccccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcc
Confidence                                                                                            


Q ss_pred             -----Ce---------------------------------EEEEeccCCCCEEEEEEecCCCEEEEEeCC-----CCEEE
Q psy4650         112 -----KT---------------------------------CVQTLEGHGQNISAVCFHPELPIVITGSED-----GSVRV  148 (381)
Q Consensus       112 -----~~---------------------------------~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d-----~~i~v  148 (381)
                           |.                                 .+..+.||.-.|.+++.+|+|+++||++..     -.|++
T Consensus       477 ~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~l  556 (764)
T KOG1063|consen  477 GETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRL  556 (764)
T ss_pred             cccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEE
Confidence                 00                                 001144888899999999999999998753     36899


Q ss_pred             EeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCceEEEec----CCCEEEEEecCceeecccccC
Q psy4650         149 WHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKVGREEPAVSMDV----NGCKIIWARHSEVQQANLKTM  224 (381)
Q Consensus       149 wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~~~~~~~~~~d~----~~~~~~~~~~~~~~~~~~~~~  224 (381)
                      |+..+....+.+.+|+-.|+.++|+|+|++|++.|.|.++.+|...+....-++.    ...+.+|+             
T Consensus       557 w~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWd-------------  623 (764)
T KOG1063|consen  557 WNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWD-------------  623 (764)
T ss_pred             EeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEE-------------
Confidence            9999998899999999999999999999999999999999997654433322221    11223333             


Q ss_pred             CccccccCCceEEeeehHHHHHhccCCCcC
Q psy4650         225 PEVFENITAGVVLTLSVHVTIKYRLDISDS  254 (381)
Q Consensus       225 ~~~~~~~~dg~~l~~~~~d~~~~~~d~~~~  254 (381)
                         ..|+||+..+++++.|+++..|....+
T Consensus       624 ---csW~pde~~FaTaSRDK~VkVW~~~~~  650 (764)
T KOG1063|consen  624 ---CSWSPDEKYFATASRDKKVKVWEEPDL  650 (764)
T ss_pred             ---cccCcccceeEEecCCceEEEEeccCc
Confidence               578999999999999999999987665

>KOG1063|consensus

Probab=99.42  E-value=4.6e-12  Score=115.62  Aligned_cols=202  Identities=16%  Similarity=0.170  Sum_probs=142.6

Q ss_pred             cceeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCC-ccEEEEEcCCCeEEEEECCCCe
Q psy4650          35 TKVDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGD-KPYLISGADDRLVKIWDYQNKT  113 (381)
Q Consensus        35 ~~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~-~~~l~s~~~d~~v~vwd~~~~~  113 (381)
                      ++.++.. +.+.-+++.|+.+..+.+|.-...+-..+..+.||++.|.+++|...+. .-+|+|+|.|..||+|.+.-+.
T Consensus       149 LcL~~~~-~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~  227 (764)
T KOG1063|consen  149 LCLAALK-NNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGD  227 (764)
T ss_pred             HHHhhhc-cCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecC
Confidence            3344444 2335566677777788888765444566788999999999999976544 5588999999999999763211


Q ss_pred             ---------------------EE----------EEeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCC--eeeEEE
Q psy4650         114 ---------------------CV----------QTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTH--RLEISL  160 (381)
Q Consensus       114 ---------------------~~----------~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~--~~~~~~  160 (381)
                                           ..          ..+.||.+.|.++.|+|.+..|++++.|.++.+|.....  -.+...
T Consensus       228 ~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~v  307 (764)
T KOG1063|consen  228 DEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVV  307 (764)
T ss_pred             CccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEE
Confidence                                 01          113489999999999999999999999999999987654  332222


Q ss_pred             -----ecCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCceEEEecCCCEEEEEecCceeecccccCCccccccCCce
Q psy4650         161 -----TYGLERVWTISSLKGSNNVAIGYDEGSVLLKVGREEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGV  235 (381)
Q Consensus       161 -----~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~  235 (381)
                           .+.....+...|+|++..+++-+..|..++|...           ....|.... .......+... ++|.|.|.
T Consensus       308 RlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~-----------d~~~w~~~~-~iSGH~~~V~d-v~W~psGe  374 (764)
T KOG1063|consen  308 RLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTK-----------DKTFWTQEP-VISGHVDGVKD-VDWDPSGE  374 (764)
T ss_pred             EeecccccccceeeEEEcCCCCEEEEecccCcEEEEecc-----------Cccceeecc-cccccccccee-eeecCCCC
Confidence                 2334568899999999999999999999996522           112233221 12223333333 67889999


Q ss_pred             EEeeehHHHHHhccC
Q psy4650         236 VLTLSVHVTIKYRLD  250 (381)
Q Consensus       236 ~l~~~~~d~~~~~~d  250 (381)
                      ++.+++.|++-+.+.
T Consensus       375 flLsvs~DQTTRlFa  389 (764)
T KOG1063|consen  375 FLLSVSLDQTTRLFA  389 (764)
T ss_pred             EEEEeccccceeeec
Confidence            999999998766543

>KOG2394|consensus

Probab=99.42  E-value=3.9e-12  Score=112.92  Aligned_cols=155  Identities=15%  Similarity=0.164  Sum_probs=116.2

Q ss_pred             ceEEEEEecCCeEEEecCCCccceeeEeecc--ccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCC------------
Q psy4650          46 IEYKISYQESSRVKAFNPIQVATLILKTLYG--HEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQN------------  111 (381)
Q Consensus        46 ~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~--h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~------------  111 (381)
                      +.-++-|-.-|.+.+.++.......+.....  ....|+|+.|-|.++. .++.+-.+|.+.++|..-            
T Consensus       185 g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~-~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~  263 (636)
T KOG2394|consen  185 GLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDS-LFLVAHASGNLYLYDKEIVCGATAPSYQAL  263 (636)
T ss_pred             CcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCc-eEEEEEecCceEEeeccccccCCCCccccc
Confidence            4456667778889888885411111111111  2368999999997764 677778899999986532            


Q ss_pred             --C--------------eEEEEeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEecCCcceEEEEEcCC
Q psy4650         112 --K--------------TCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKG  175 (381)
Q Consensus       112 --~--------------~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~  175 (381)
                        +              .++..+.--.+.|...+|+|||++||+.+.||.+||||..+..++..++..-+...|++|+||
T Consensus       264 k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPD  343 (636)
T KOG2394|consen  264 KDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPD  343 (636)
T ss_pred             CCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCC
Confidence              0              111122223457788999999999999999999999999998888877777789999999999


Q ss_pred             CCEEEEEeCCCeEEEEecCCCceEEE
Q psy4650         176 SNNVAIGYDEGSVLLKVGREEPAVSM  201 (381)
Q Consensus       176 ~~~l~~~~~dg~v~i~~~~~~~~~~~  201 (381)
                      |+++++|+.|..|.+|.-.+..++.|
T Consensus       344 GKyIvtGGEDDLVtVwSf~erRVVAR  369 (636)
T KOG2394|consen  344 GKYIVTGGEDDLVTVWSFEERRVVAR  369 (636)
T ss_pred             ccEEEecCCcceEEEEEeccceEEEe
Confidence            99999999999999998777666654

>KOG2110|consensus

Probab=99.42  E-value=1.5e-11  Score=104.54  Aligned_cols=131  Identities=20%  Similarity=0.271  Sum_probs=106.6

Q ss_pred             eEEEecCCCccceeeEeeccc---cccEEEEEeeeCCCccEEEEE--cCCCeEEEEECCCCeEEEEeccCCCCEEEEEEe
Q psy4650          57 RVKAFNPIQVATLILKTLYGH---EKGVNCVDYYHGGDKPYLISG--ADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFH  131 (381)
Q Consensus        57 ~v~i~~~~~~~~~~~~~l~~h---~~~v~~~~~~~~~~~~~l~s~--~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~  131 (381)
                      .|+|||+..  -.+++++..-   ...+.++.++  ....+++--  -..|.|.+||..+.++...+..|.+++-|++|+
T Consensus       107 ~IyIydI~~--MklLhTI~t~~~n~~gl~AlS~n--~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs  182 (391)
T KOG2110|consen  107 SIYIYDIKD--MKLLHTIETTPPNPKGLCALSPN--NANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFS  182 (391)
T ss_pred             cEEEEeccc--ceeehhhhccCCCccceEeeccC--CCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEEC
Confidence            499999863  4566666543   3344444444  444477643  347899999999999999999999999999999


Q ss_pred             cCCCEEEEEeCCCC-EEEEeCCCCeeeEEEecCC--cceEEEEEcCCCCEEEEEeCCCeEEEE
Q psy4650         132 PELPIVITGSEDGS-VRVWHSGTHRLEISLTYGL--ERVWTISSLKGSNNVAIGYDEGSVLLK  191 (381)
Q Consensus       132 p~~~~l~s~~~d~~-i~vwd~~~~~~~~~~~~~~--~~v~~v~~~~~~~~l~~~~~dg~v~i~  191 (381)
                      |+|.++|+++..|+ |||+.+.+|+.++.++...  ..+.+++|+|++.+|++.+..++|+++
T Consensus       183 ~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiF  245 (391)
T KOG2110|consen  183 PDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIF  245 (391)
T ss_pred             CCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEE
Confidence            99999999999775 7899999999999987543  467899999999999999999999994

>KOG2106|consensus

Probab=99.41  E-value=2.1e-11  Score=107.59  Aligned_cols=180  Identities=13%  Similarity=0.058  Sum_probs=130.0

Q ss_pred             EEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEEEeccCCCCEEEE
Q psy4650          49 KISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAV  128 (381)
Q Consensus        49 ~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~  128 (381)
                      ++.|-..+.|..=+++   ...-....||.+....++.+|+.+  ++++|+.|+.+++|+  ..++..+.. -..++.|+
T Consensus       342 i~vGTtrN~iL~Gt~~---~~f~~~v~gh~delwgla~hps~~--q~~T~gqdk~v~lW~--~~k~~wt~~-~~d~~~~~  413 (626)
T KOG2106|consen  342 ILVGTTRNFILQGTLE---NGFTLTVQGHGDELWGLATHPSKN--QLLTCGQDKHVRLWN--DHKLEWTKI-IEDPAECA  413 (626)
T ss_pred             EEEeeccceEEEeeec---CCceEEEEecccceeeEEcCCChh--heeeccCcceEEEcc--CCceeEEEE-ecCceeEe
Confidence            3344444455444442   233445679999999999999766  799999999999999  444454444 45688999


Q ss_pred             EEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCceEEEecCCCEE
Q psy4650         129 CFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKVGREEPAVSMDVNGCKI  208 (381)
Q Consensus       129 ~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~~~~~~~~~~d~~~~~~  208 (381)
                      .|+|.| .++.|...|...+.|..+...+..-.. ..+++++.|+|+|.++|.|+.|+.+.++.        .+. +|..
T Consensus       414 ~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~--------Vs~-~g~~  482 (626)
T KOG2106|consen  414 DFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYR--------VSA-NGRK  482 (626)
T ss_pred             eccCcc-eEEEeeccceEEEEecccceeEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEEEE--------ECC-CCcE
Confidence            999999 999999999999999999665554444 88999999999999999999999999933        222 2222


Q ss_pred             EEEecCceeecccccCCccccccCCceEEeeehHHHHHhccCCC
Q psy4650         209 IWARHSEVQQANLKTMPEVFENITAGVVLTLSVHVTIKYRLDIS  252 (381)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~d~~~~~~d~~  252 (381)
                      +-...... .    +..--++|++|++++...+.|-....|...
T Consensus       483 y~r~~k~~-g----s~ithLDwS~Ds~~~~~~S~d~eiLyW~~~  521 (626)
T KOG2106|consen  483 YSRVGKCS-G----SPITHLDWSSDSQFLVSNSGDYEILYWKPS  521 (626)
T ss_pred             EEEeeeec-C----ceeEEeeecCCCceEEeccCceEEEEEccc
Confidence            22211111 1    111115789999999999988877778543

>KOG0307|consensus

Probab=99.41  E-value=6.5e-13  Score=127.56  Aligned_cols=154  Identities=12%  Similarity=0.138  Sum_probs=118.8

Q ss_pred             eeeecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEEE
Q psy4650          38 DITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQT  117 (381)
Q Consensus        38 ~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~  117 (381)
                      .+-+++..++.+++|+.+|.|.|||+..........-..-.+.|.+++|+..-+ +.|++++.+|.+.|||++..+++-.
T Consensus       121 gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvq-hILAS~s~sg~~~iWDlr~~~pii~  199 (1049)
T KOG0307|consen  121 GLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVS-HILASGSPSGRAVIWDLRKKKPIIK  199 (1049)
T ss_pred             eeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhh-HHhhccCCCCCceeccccCCCcccc
Confidence            344667778899999999999999997533222111122457899999976433 4789999999999999998888777


Q ss_pred             eccCCC--CEEEEEEecCCC-EEEEEeC---CCCEEEEeCCCC-eeeEEEecCCcceEEEEEcCCC-CEEEEEeCCCeEE
Q psy4650         118 LEGHGQ--NISAVCFHPELP-IVITGSE---DGSVRVWHSGTH-RLEISLTYGLERVWTISSLKGS-NNVAIGYDEGSVL  189 (381)
Q Consensus       118 ~~~~~~--~v~~~~~~p~~~-~l~s~~~---d~~i~vwd~~~~-~~~~~~~~~~~~v~~v~~~~~~-~~l~~~~~dg~v~  189 (381)
                      +..|.+  .+..++|||+.. .++.++.   .-.|.+||++.. ..++.+.+|...|.++.|++.+ .++++++.|+.+.
T Consensus       200 ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii  279 (1049)
T KOG0307|consen  200 LSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRII  279 (1049)
T ss_pred             cccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCee
Confidence            766654  477899999876 5555554   347999999853 4677788999999999999976 7888999999999


Q ss_pred             EEe
Q psy4650         190 LKV  192 (381)
Q Consensus       190 i~~  192 (381)
                      +|+
T Consensus       280 ~wN  282 (1049)
T KOG0307|consen  280 CWN  282 (1049)
T ss_pred             Eec
Confidence            844

>KOG1539|consensus

Probab=99.40  E-value=1.9e-11  Score=113.95  Aligned_cols=142  Identities=12%  Similarity=0.175  Sum_probs=126.8

Q ss_pred             eEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEEEeccCCCCEE
Q psy4650          47 EYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNIS  126 (381)
Q Consensus        47 ~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~  126 (381)
                      +-++-|+..|.+.+|+..  ....+++++++...|+++.-+|-=+  .++.|-.+|+|.+++++.++.+.+|+-..+.|+
T Consensus       173 NKIvvGs~~G~lql~Nvr--t~K~v~~f~~~~s~IT~ieqsPaLD--VVaiG~~~G~ViifNlK~dkil~sFk~d~g~Vt  248 (910)
T KOG1539|consen  173 NKIVVGSSQGRLQLWNVR--TGKVVYTFQEFFSRITAIEQSPALD--VVAIGLENGTVIIFNLKFDKILMSFKQDWGRVT  248 (910)
T ss_pred             eeEEEeecCCcEEEEEec--cCcEEEEecccccceeEeccCCcce--EEEEeccCceEEEEEcccCcEEEEEEcccccee
Confidence            345778999999999998  4678899999999999999888555  899999999999999999999999995469999


Q ss_pred             EEEEecCCC-EEEEEeCCCCEEEEeCCCCeeeEEEe-cCCcceEEEEEcCCCCEEEEEeCCCeEEEEe
Q psy4650         127 AVCFHPELP-IVITGSEDGSVRVWHSGTHRLEISLT-YGLERVWTISSLKGSNNVAIGYDEGSVLLKV  192 (381)
Q Consensus       127 ~~~~~p~~~-~l~s~~~d~~i~vwd~~~~~~~~~~~-~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~  192 (381)
                      +++|..||. .+++|+..|.+-+||+...+....+. .|.+.+....|.|....+.+++.|+.+++|.
T Consensus       249 slSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~v  316 (910)
T KOG1539|consen  249 SLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWV  316 (910)
T ss_pred             EEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEE
Confidence            999999997 77788888999999999888877665 6889999999999999999999999999987

>KOG2048|consensus

Probab=99.40  E-value=1.3e-11  Score=112.45  Aligned_cols=150  Identities=15%  Similarity=0.192  Sum_probs=118.1

Q ss_pred             eeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEE
Q psy4650          37 VDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQ  116 (381)
Q Consensus        37 ~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~  116 (381)
                      ..+.-++. ...++.|.+||.+..++.....-.....|.-.+++|.++.|+|++.  .+++|+.||.|++||...+..+.
T Consensus       114 Wsiai~p~-~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~--~i~~Gs~Dg~Iriwd~~~~~t~~  190 (691)
T KOG2048|consen  114 WSIAINPE-NTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGT--KIAGGSIDGVIRIWDVKSGQTLH  190 (691)
T ss_pred             eEEEeCCc-cceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCcc--EEEecccCceEEEEEcCCCceEE
Confidence            34444443 3467777889977777765433334455666789999999999887  69999999999999999987655


Q ss_pred             Ee-------cc-CCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCCCeE
Q psy4650         117 TL-------EG-HGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSV  188 (381)
Q Consensus       117 ~~-------~~-~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v  188 (381)
                      ..       .. ...-|+++.|-.+ ..+++|...|+|.+||...|+++.+...|...|.+++..+++..+.+++.|+.+
T Consensus       191 ~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~i  269 (691)
T KOG2048|consen  191 IITMQLDRLSKREPTIVWSVLFLRD-STIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKI  269 (691)
T ss_pred             EeeecccccccCCceEEEEEEEeec-CcEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCce
Confidence            21       11 2224677777644 478999999999999999999999999999999999999999999999999988


Q ss_pred             EE
Q psy4650         189 LL  190 (381)
Q Consensus       189 ~i  190 (381)
                      .-
T Consensus       270 i~  271 (691)
T KOG2048|consen  270 IQ  271 (691)
T ss_pred             EE
Confidence            77

>KOG2445|consensus

Probab=99.39  E-value=1.6e-11  Score=102.02  Aligned_cols=116  Identities=21%  Similarity=0.289  Sum_probs=97.6

Q ss_pred             ccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCC----eEEEEeccCCCCEEEEEEec--CCCEEEEEeCCCCEEE
Q psy4650          75 YGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNK----TCVQTLEGHGQNISAVCFHP--ELPIVITGSEDGSVRV  148 (381)
Q Consensus        75 ~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~----~~~~~~~~~~~~v~~~~~~p--~~~~l~s~~~d~~i~v  148 (381)
                      .+|.+-|+++.|.+.|.  .+++|+.|++++|||....    .+....+.|.+.|..+.|.+  -|+.+|+++.|+++.|
T Consensus        10 s~h~DlihdVs~D~~GR--RmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~i   87 (361)
T KOG2445|consen   10 SGHKDLIHDVSFDFYGR--RMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSI   87 (361)
T ss_pred             cCCcceeeeeeecccCc--eeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceee
Confidence            37899999999999777  7999999999999996443    46677899999999999965  6789999999999999


Q ss_pred             EeCC---------CCeeeEEEecCCcceEEEEEcCC--CCEEEEEeCCCeEEEEe
Q psy4650         149 WHSG---------THRLEISLTYGLERVWTISSLKG--SNNVAIGYDEGSVLLKV  192 (381)
Q Consensus       149 wd~~---------~~~~~~~~~~~~~~v~~v~~~~~--~~~l~~~~~dg~v~i~~  192 (381)
                      |.-.         ......++...+..|+.|+|.|.  |-.+|+++.||.++|+.
T Consensus        88 WEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYE  142 (361)
T KOG2445|consen   88 WEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYE  142 (361)
T ss_pred             eeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEe
Confidence            9762         11234456677889999999985  77899999999999965

>KOG0290|consensus

Probab=99.39  E-value=7.3e-12  Score=103.19  Aligned_cols=149  Identities=12%  Similarity=0.084  Sum_probs=118.4

Q ss_pred             CCCceEEEEEecCCeEEEecCCCc-cceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEEEe---
Q psy4650          43 KDMIEYKISYQESSRVKAFNPIQV-ATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTL---  118 (381)
Q Consensus        43 ~~~~~~~~s~~~d~~v~i~~~~~~-~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~---  118 (381)
                      .-...++.+.+-|.+-.+||++.. ...+...|-+|...|..++|...+. +.++|.|.||+||+||++..+-...+   
T Consensus       160 e~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~-~~FASvgaDGSvRmFDLR~leHSTIIYE~  238 (364)
T KOG0290|consen  160 EVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSR-DVFASVGADGSVRMFDLRSLEHSTIIYED  238 (364)
T ss_pred             cCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCcc-ceEEEecCCCcEEEEEecccccceEEecC
Confidence            344779999999999999999764 3334566889999999999998544 59999999999999999876533322   


Q ss_pred             ccCCCCEEEEEEecCCC-EEEEEeC-CCCEEEEeCCC-CeeeEEEecCCcceEEEEEcCCC-CEEEEEeCCCeEEEEe
Q psy4650         119 EGHGQNISAVCFHPELP-IVITGSE-DGSVRVWHSGT-HRLEISLTYGLERVWTISSLKGS-NNVAIGYDEGSVLLKV  192 (381)
Q Consensus       119 ~~~~~~v~~~~~~p~~~-~l~s~~~-d~~i~vwd~~~-~~~~~~~~~~~~~v~~v~~~~~~-~~l~~~~~dg~v~i~~  192 (381)
                      .....+...++|++... ++|+-.. ...|.+.|++. ..++..+.+|.+.|+.++|.|.. ..+.++++|....+|+
T Consensus       239 p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWD  316 (364)
T KOG0290|consen  239 PSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWD  316 (364)
T ss_pred             CCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEe
Confidence            22246788999998665 6676554 45688999984 56788899999999999999975 5788899999999854

>KOG0100|consensus

Probab=99.38  E-value=6.2e-13  Score=114.61  Aligned_cols=77  Identities=29%  Similarity=0.490  Sum_probs=74.0

Q ss_pred             HHHHhhhhhhhhHhhhccccceeeEeeccccCcceEEeecHHHHHHHHHHHHHHhHHHHHHHHHhCCCCcccccccc
Q psy4650         304 IGGLLTSFVQPCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIGGLLTSFVQPIEDVLSRSNITHDQINKFT  380 (381)
Q Consensus       304 ~~~l~~~~~~~~~~~Ls~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~v~  380 (381)
                      +..-++|.++.+||+||.+-+..++++++.++.+|.-+++|.+||+|+.+||.+|+.||+++|+||+|.+.|||+|+
T Consensus       291 A~~KLrRe~EkAKRaLSsqhq~riEIeS~fdG~DfSEtLtRAkFEElNmDLFr~TlkPv~kvl~Ds~lkKsdideiV  367 (663)
T KOG0100|consen  291 AVQKLRREVEKAKRALSSQHQVRIEIESLFDGVDFSETLTRAKFEELNMDLFRKTLKPVQKVLEDSDLKKSDIDEIV  367 (663)
T ss_pred             HHHHHHHHHHHHHhhhccccceEEeeeeccccccccchhhhhHHHHhhhHHHHHhhHHHHHHHhhcCcccccCceEE
Confidence            45668899999999999999999999999999999999999999999999999999999999999999999999987

>KOG2055|consensus

Probab=99.38  E-value=5.3e-12  Score=110.08  Aligned_cols=186  Identities=10%  Similarity=0.198  Sum_probs=134.7

Q ss_pred             eEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEEEeccCCCCE-
Q psy4650          47 EYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNI-  125 (381)
Q Consensus        47 ~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v-  125 (381)
                      .+++..+..|-|.+....+  ...+.+++ -.+.|.++.|+.++.  .|+.++.+|.|.+||+....++..+... +.| 
T Consensus       316 ~fia~~G~~G~I~lLhakT--~eli~s~K-ieG~v~~~~fsSdsk--~l~~~~~~GeV~v~nl~~~~~~~rf~D~-G~v~  389 (514)
T KOG2055|consen  316 NFIAIAGNNGHIHLLHAKT--KELITSFK-IEGVVSDFTFSSDSK--ELLASGGTGEVYVWNLRQNSCLHRFVDD-GSVH  389 (514)
T ss_pred             CeEEEcccCceEEeehhhh--hhhhheee-eccEEeeEEEecCCc--EEEEEcCCceEEEEecCCcceEEEEeec-Cccc
Confidence            3899999999999988753  33444443 468899999998775  6777788999999999999888888643 333 


Q ss_pred             -EEEEEecCCCEEEEEeCCCCEEEEeCC------CCeeeEEEecCCcceEEEEEcCCCCEEEEEeC--CCeEEEEecCCC
Q psy4650         126 -SAVCFHPELPIVITGSEDGSVRVWHSG------THRLEISLTYGLERVWTISSLKGSNNVAIGYD--EGSVLLKVGREE  196 (381)
Q Consensus       126 -~~~~~~p~~~~l~s~~~d~~i~vwd~~------~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~--dg~v~i~~~~~~  196 (381)
                       ++++.++++.++|+|+..|.|-|||..      ..+++..+..-...|+++.|+|++.+||.+|.  +..+++      
T Consensus       390 gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrL------  463 (514)
T KOG2055|consen  390 GTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRL------  463 (514)
T ss_pred             eeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEE------
Confidence             566677899999999999999999965      34556666556678999999999999988875  556666      


Q ss_pred             ceEEEecCCCEEEEEecCceeecccccCCccccccCCceEEeeehHHHHHhccCC
Q psy4650         197 PAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSVHVTIKYRLDI  251 (381)
Q Consensus       197 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~d~~~~~~d~  251 (381)
                          ...-+.....+.  +.....+..... ++|+|.|-+++++...++...|.+
T Consensus       464 ----VHvPS~TVFsNf--P~~n~~vg~vtc-~aFSP~sG~lAvGNe~grv~l~kL  511 (514)
T KOG2055|consen  464 ----VHVPSCTVFSNF--PTSNTKVGHVTC-MAFSPNSGYLAVGNEAGRVHLFKL  511 (514)
T ss_pred             ----EeccceeeeccC--CCCCCcccceEE-EEecCCCceEEeecCCCceeeEee
Confidence                222222111111  001112222222 789999999999999998888765

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.37  E-value=8.4e-11  Score=108.71  Aligned_cols=193  Identities=22%  Similarity=0.362  Sum_probs=141.9

Q ss_pred             cCCCceEEEEEec-CCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcC-CCeEEEEECCCCeEEEEec
Q psy4650          42 NKDMIEYKISYQE-SSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGAD-DRLVKIWDYQNKTCVQTLE  119 (381)
Q Consensus        42 ~~~~~~~~~s~~~-d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~-d~~v~vwd~~~~~~~~~~~  119 (381)
                      .++...+++..+. ++.+.+|+... .......+.+|...|.++.|+|++.  .+++++. |+.+++|+...+..+..+.
T Consensus       119 ~~~~~~~~~~~~~~d~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (466)
T COG2319         119 SPDGNSILLASSSLDGTVKLWDLST-PGKLIRTLEGHSESVTSLAFSPDGK--LLASGSSLDGTIKLWDLRTGKPLSTLA  195 (466)
T ss_pred             CCCcceEEeccCCCCccEEEEEecC-CCeEEEEEecCcccEEEEEECCCCC--EEEecCCCCCceEEEEcCCCceEEeec
Confidence            4444445555444 99999999863 2456678889999999999999887  6778875 9999999999988889999


Q ss_pred             cCCCCEEEEEEecCCC-EEEEEeCCCCEEEEeCCCCeeeE-EEecCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCc
Q psy4650         120 GHGQNISAVCFHPELP-IVITGSEDGSVRVWHSGTHRLEI-SLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKVGREEP  197 (381)
Q Consensus       120 ~~~~~v~~~~~~p~~~-~l~s~~~d~~i~vwd~~~~~~~~-~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~~~~~~  197 (381)
                      +|...|.+++|+|++. .+++++.|+.+++||...+.... .+.+|...+ ...|+|++..+++++.|+.+++|      
T Consensus       196 ~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~------  268 (466)
T COG2319         196 GHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLW------  268 (466)
T ss_pred             cCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEe------
Confidence            9999999999999998 66666899999999999887777 577777765 44899999888999999999995      


Q ss_pred             eEEEecCCCEE-EEEecCceeecccccCCccccccCCceEEeeehHHHHHhccCCCcC
Q psy4650         198 AVSMDVNGCKI-IWARHSEVQQANLKTMPEVFENITAGVVLTLSVHVTIKYRLDISDS  254 (381)
Q Consensus       198 ~~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~d~~~~~~d~~~~  254 (381)
                          +...... +.....  +...+..    ..+.|++..+.+++.+.....|+....
T Consensus       269 ----~~~~~~~~~~~~~~--~~~~v~~----~~~~~~~~~~~~~~~d~~~~~~~~~~~  316 (466)
T COG2319         269 ----DLRSSSSLLRTLSG--HSSSVLS----VAFSPDGKLLASGSSDGTVRLWDLETG  316 (466)
T ss_pred             ----eecCCCcEEEEEec--CCccEEE----EEECCCCCEEEEeeCCCcEEEEEcCCC
Confidence                4432222 222200  0111111    245676777776766655566765443

>KOG2110|consensus

Probab=99.36  E-value=9.7e-11  Score=99.71  Aligned_cols=175  Identities=10%  Similarity=0.105  Sum_probs=132.4

Q ss_pred             CeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEEEecc---CCCCEEEEEEec
Q psy4650          56 SRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEG---HGQNISAVCFHP  132 (381)
Q Consensus        56 ~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~---~~~~v~~~~~~p  132 (381)
                      +.+++++.......+-..+   ...|.++.+..  +  .|+.+-.+. |.|||+++.+.+.++..   +..++.+++.++
T Consensus        68 r~Lkv~~~Kk~~~ICe~~f---pt~IL~VrmNr--~--RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~  139 (391)
T KOG2110|consen   68 RKLKVVHFKKKTTICEIFF---PTSILAVRMNR--K--RLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNN  139 (391)
T ss_pred             ceEEEEEcccCceEEEEec---CCceEEEEEcc--c--eEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCC
Confidence            3466666643222222222   35788888853  3  455555443 99999999988887754   445677777777


Q ss_pred             CCCEEEEEeC--CCCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCCCeE-EEEecCCCceEEEecCCCEEE
Q psy4650         133 ELPIVITGSE--DGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSV-LLKVGREEPAVSMDVNGCKII  209 (381)
Q Consensus       133 ~~~~l~s~~~--d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v-~i~~~~~~~~~~~d~~~~~~~  209 (381)
                      .+.+++.-+.  .|.|.+||+.+-+....+..|.+.+.+++|+++|.++|++|+.|+| |+          +....|..+
T Consensus       140 ~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRV----------f~v~~G~kl  209 (391)
T KOG2110|consen  140 ANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRV----------FSVPEGQKL  209 (391)
T ss_pred             CCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEE----------EEcCCccEe
Confidence            7788886433  7899999999999999999999999999999999999999999986 44          778888888


Q ss_pred             EEecCceeecccccCCccccccCCceEEeeehHHHHHhccCCC
Q psy4650         210 WARHSEVQQANLKTMPEVFENITAGVVLTLSVHVTIKYRLDIS  252 (381)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~d~~~~~~d~~  252 (381)
                      +..+......++.+    ++|+||+++|...+..++++.+.+.
T Consensus       210 ~eFRRG~~~~~IyS----L~Fs~ds~~L~~sS~TeTVHiFKL~  248 (391)
T KOG2110|consen  210 YEFRRGTYPVSIYS----LSFSPDSQFLAASSNTETVHIFKLE  248 (391)
T ss_pred             eeeeCCceeeEEEE----EEECCCCCeEEEecCCCeEEEEEec
Confidence            88776655555544    5678999999999998888876653

>KOG1007|consensus

Probab=99.35  E-value=1.5e-11  Score=101.31  Aligned_cols=136  Identities=21%  Similarity=0.283  Sum_probs=108.5

Q ss_pred             ecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCC-eEEEEeccCCCCEEEEEEe
Q psy4650          53 QESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNK-TCVQTLEGHGQNISAVCFH  131 (381)
Q Consensus        53 ~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~-~~~~~~~~~~~~v~~~~~~  131 (381)
                      ..|+++..||.++. ......-.+|...|..+.|+|+-+ .+|++|+.||.|++||.+.. .++..+.+|...|.++.|+
T Consensus       190 t~d~tl~~~D~RT~-~~~~sI~dAHgq~vrdlDfNpnkq-~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn  267 (370)
T KOG1007|consen  190 TSDSTLQFWDLRTM-KKNNSIEDAHGQRVRDLDFNPNKQ-HILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFN  267 (370)
T ss_pred             eCCCcEEEEEccch-hhhcchhhhhcceeeeccCCCCce-EEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEec
Confidence            45679999999742 222333457989999999999766 48999999999999999765 5789999999999999999


Q ss_pred             cCCC-EEEEEeCCCCEEEEeCCCC-----------------------------eeeEEEecCCcceEEEEEcCCCC-EEE
Q psy4650         132 PELP-IVITGSEDGSVRVWHSGTH-----------------------------RLEISLTYGLERVWTISSLKGSN-NVA  180 (381)
Q Consensus       132 p~~~-~l~s~~~d~~i~vwd~~~~-----------------------------~~~~~~~~~~~~v~~v~~~~~~~-~l~  180 (381)
                      |... ++++||.|..|.+|...+-                             ..+.++..|.+.|++++|+.-.. .+|
T Consensus       268 ~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFA  347 (370)
T KOG1007|consen  268 PEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFA  347 (370)
T ss_pred             CccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEE
Confidence            9654 7889999999999965421                             12235667889999999997655 577


Q ss_pred             EEeCCCeEEE
Q psy4650         181 IGYDEGSVLL  190 (381)
Q Consensus       181 ~~~~dg~v~i  190 (381)
                      +-+.||.+.|
T Consensus       348 SLSYDGRviI  357 (370)
T KOG1007|consen  348 SLSYDGRVII  357 (370)
T ss_pred             EeccCceEEe
Confidence            8888998887

>KOG4378|consensus

Probab=99.34  E-value=2.5e-11  Score=106.93  Aligned_cols=147  Identities=16%  Similarity=0.217  Sum_probs=118.0

Q ss_pred             CCceEEEEEecCCeEEEecCCCccceeeEeeccc-cccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEEEe-ccC
Q psy4650          44 DMIEYKISYQESSRVKAFNPIQVATLILKTLYGH-EKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTL-EGH  121 (381)
Q Consensus        44 ~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h-~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~-~~~  121 (381)
                      ...+|+++++..|.|.+.......  ....+..- ...|.-+.|+|... .+|.+++.+|.|.+||+....++..+ ..|
T Consensus       131 ~~DeyiAsvs~gGdiiih~~~t~~--~tt~f~~~sgqsvRll~ys~skr-~lL~~asd~G~VtlwDv~g~sp~~~~~~~H  207 (673)
T KOG4378|consen  131 NTDEYIASVSDGGDIIIHGTKTKQ--KTTTFTIDSGQSVRLLRYSPSKR-FLLSIASDKGAVTLWDVQGMSPIFHASEAH  207 (673)
T ss_pred             CCcceeEEeccCCcEEEEecccCc--cccceecCCCCeEEEeecccccc-eeeEeeccCCeEEEEeccCCCcccchhhhc
Confidence            447899999999999999885422  22233322 24556889998654 47889999999999999988776655 669


Q ss_pred             CCCEEEEEEecCCC-EEEEEeCCCCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCCCeEEEEecC
Q psy4650         122 GQNISAVCFHPELP-IVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKVGR  194 (381)
Q Consensus       122 ~~~v~~~~~~p~~~-~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~~~  194 (381)
                      .++...++|+|... ++++.|.|..|.+||.+.......+. ...+..+++|.++|.+|+.|...|.+..++-+
T Consensus       208 sAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~-y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R  280 (673)
T KOG4378|consen  208 SAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLT-YSHPLSTVAFSECGTYLCAGNSKGELIAYDMR  280 (673)
T ss_pred             cCCcCcceecCCccceEEEecccceEEEeecccccccceee-ecCCcceeeecCCceEEEeecCCceEEEEecc
Confidence            99999999999776 78899999999999999777666665 44788999999999999999999999996533

>KOG1310|consensus

Probab=99.34  E-value=3.4e-12  Score=113.58  Aligned_cols=222  Identities=17%  Similarity=0.228  Sum_probs=149.6

Q ss_pred             eeeecCCCceEEEEEecCCeEEEecCCCccceeeEe-eccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCC-----
Q psy4650          38 DITTNKDMIEYKISYQESSRVKAFNPIQVATLILKT-LYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQN-----  111 (381)
Q Consensus        38 ~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~-l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~-----  111 (381)
                      ++.++.+ +.+|++|++|-.+.|||+..  .+.++. -.||+..|.|+.|.|..+...++||+.|..|+++|+..     
T Consensus        55 ~LeWn~d-G~lL~SGSDD~r~ivWd~~~--~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~  131 (758)
T KOG1310|consen   55 CLEWNAD-GELLASGSDDTRLIVWDPFE--YKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGG  131 (758)
T ss_pred             ceeecCC-CCEEeecCCcceEEeecchh--cceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEecccccccc
Confidence            3445555 77999999999999999973  444454 35999999999999988878999999999999999984     


Q ss_pred             -----CeEEEEeccCCCCEEEEEEecCCC-EEEEEeCCCCEEEEeCCCCeee----------EEEecCCcceEEEEEcCC
Q psy4650         112 -----KTCVQTLEGHGQNISAVCFHPELP-IVITGSEDGSVRVWHSGTHRLE----------ISLTYGLERVWTISSLKG  175 (381)
Q Consensus       112 -----~~~~~~~~~~~~~v~~~~~~p~~~-~l~s~~~d~~i~vwd~~~~~~~----------~~~~~~~~~v~~v~~~~~  175 (381)
                           ..+...+..|...|..++-.|+++ .+.+++.||+++-+|++.....          ..+...--...++..+|.
T Consensus       132 ~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~  211 (758)
T KOG1310|consen  132 MDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPS  211 (758)
T ss_pred             cccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCC
Confidence                 245667788999999999999995 8889999999999999852211          111122234567888886


Q ss_pred             C-CEEEEEeCCCeEEEEecC-CCce-------EEEecCCCEEEEEecCceeeccccc-------CCccccccCCceEEee
Q psy4650         176 S-NNVAIGYDEGSVLLKVGR-EEPA-------VSMDVNGCKIIWARHSEVQQANLKT-------MPEVFENITAGVVLTL  239 (381)
Q Consensus       176 ~-~~l~~~~~dg~v~i~~~~-~~~~-------~~~d~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~dg~~l~~  239 (381)
                      . .+|++|+.|...++++.+ .-+-       -.-++.....+- .....+..+..+       ..-...|+|+|.-|.+
T Consensus       212 rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~-yf~p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLv  290 (758)
T KOG1310|consen  212 RPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVR-YFSPGHLKNSQGNLDRYITCCTYVTFNPNGTELLV  290 (758)
T ss_pred             CCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhh-eecCccccCcccccccceeeeEEEEECCCCcEEEE
Confidence            4 589999999999985511 0000       000000000000 000011111111       1112688999988887


Q ss_pred             ehHHHHHhccCCCcChhHHHHHHH
Q psy4650         240 SVHVTIKYRLDISDSHRSVAKLRA  263 (381)
Q Consensus       240 ~~~d~~~~~~d~~~~~~~~~~l~~  263 (381)
                      ......+|.+++..+...+..+..
T Consensus       291 s~~gEhVYlfdvn~~~~~~~y~~~  314 (758)
T KOG1310|consen  291 SWGGEHVYLFDVNEDKSPTPYFLP  314 (758)
T ss_pred             eeCCeEEEEEeecCCCCceeecCc
Confidence            777667788888776666555433

>KOG1310|consensus

Probab=99.33  E-value=5.3e-12  Score=112.39  Aligned_cols=119  Identities=24%  Similarity=0.424  Sum_probs=102.1

Q ss_pred             EeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEEEe-ccCCCCEEEEEEecC--CCEEEEEeCCCCEEE
Q psy4650          72 KTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTL-EGHGQNISAVCFHPE--LPIVITGSEDGSVRV  148 (381)
Q Consensus        72 ~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~-~~~~~~v~~~~~~p~--~~~l~s~~~d~~i~v  148 (381)
                      ..|.||++.|.|+.|+.+|+  +|+|||.|-.+.|||....+.+..+ .||++.|.++.|-|.  .+.+++|..|..|++
T Consensus        44 ~eL~GH~GCVN~LeWn~dG~--lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~l  121 (758)
T KOG1310|consen   44 AELTGHTGCVNCLEWNADGE--LLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKL  121 (758)
T ss_pred             hhhccccceecceeecCCCC--EEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEE
Confidence            56789999999999999888  8999999999999999988888777 579999999999994  348999999999999


Q ss_pred             EeCCCC----------eeeEEEecCCcceEEEEEcCCC-CEEEEEeCCCeEEEEe
Q psy4650         149 WHSGTH----------RLEISLTYGLERVWTISSLKGS-NNVAIGYDEGSVLLKV  192 (381)
Q Consensus       149 wd~~~~----------~~~~~~~~~~~~v~~v~~~~~~-~~l~~~~~dg~v~i~~  192 (381)
                      +|+...          .....+..|...|-.++-.|++ ..+.+++.||+++-.+
T Consensus       122 fdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyD  176 (758)
T KOG1310|consen  122 FDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYD  176 (758)
T ss_pred             EecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeec
Confidence            999841          2333455688888899999998 6889999999999844

>KOG4227|consensus

Probab=99.30  E-value=2.1e-10  Score=98.39  Aligned_cols=225  Identities=11%  Similarity=0.067  Sum_probs=149.6

Q ss_pred             hhHHHHhhhcce---eeeecCCCceEEEEEecCCeEEEecCCCc----cceeeEeec-cccccEEEEEeeeCCCccEEEE
Q psy4650          26 TDIETIVRETKV---DITTNKDMIEYKISYQESSRVKAFNPIQV----ATLILKTLY-GHEKGVNCVDYYHGGDKPYLIS   97 (381)
Q Consensus        26 ~~~~~~~~~~~~---~i~~~~~~~~~~~s~~~d~~v~i~~~~~~----~~~~~~~l~-~h~~~v~~~~~~~~~~~~~l~s   97 (381)
                      |-.++....+.-   ++.+..+ +.+|++|+.|..+++|++.+.    ..+++.... .|...|.|+.|.....  ++.+
T Consensus        46 ~~~qKD~~~H~GCiNAlqFS~N-~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~--~~~S  122 (609)
T KOG4227|consen   46 PFCQKDVREHTGCINALQFSHN-DRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENR--FLYS  122 (609)
T ss_pred             chhhhhhhhhccccceeeeccC-CeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCe--eEec
Confidence            344555554432   5556655 889999999999999998542    112222222 3557999999976443  8999


Q ss_pred             EcCCCeEEEEECCCCeEEEEecc--CCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCe-e--eEEEecCCcceEEEEE
Q psy4650          98 GADDRLVKIWDYQNKTCVQTLEG--HGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHR-L--EISLTYGLERVWTISS  172 (381)
Q Consensus        98 ~~~d~~v~vwd~~~~~~~~~~~~--~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~-~--~~~~~~~~~~v~~v~~  172 (381)
                      |+.+++|...|+.+.+.+.++..  ..+.|..+..+|....+++.+.++.|.+||.+..+ .  ..-+........++.|
T Consensus       123 G~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F  202 (609)
T KOG4227|consen  123 GERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEF  202 (609)
T ss_pred             CCCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeee
Confidence            99999999999999988877752  23589999999999999999999999999998654 1  1112223455678889


Q ss_pred             cCCC-CEEEEEeCCCeEEEEecCC---------------------------------------CceEEEecCCCE-EEEE
Q psy4650         173 LKGS-NNVAIGYDEGSVLLKVGRE---------------------------------------EPAVSMDVNGCK-IIWA  211 (381)
Q Consensus       173 ~~~~-~~l~~~~~dg~v~i~~~~~---------------------------------------~~~~~~d~~~~~-~~~~  211 (381)
                      +|.. .++++.+..|-+-+|+.+.                                       .+-+.||..+.. ++..
T Consensus       203 ~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k  282 (609)
T KOG4227|consen  203 HPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLK  282 (609)
T ss_pred             cCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEe
Confidence            9875 4677777777777765221                                       233344554422 2222


Q ss_pred             ec-CceeecccccCCccccccCCceEEeeehHHHHHhccCCCcCh
Q psy4650         212 RH-SEVQQANLKTMPEVFENITAGVVLTLSVHVTIKYRLDISDSH  255 (381)
Q Consensus       212 ~~-~~~~~~~~~~~~~~~~~~~dg~~l~~~~~d~~~~~~d~~~~~  255 (381)
                      .. .....++...... ++|..| ..+++++.+...++|.+...+
T Consensus       283 ~D~N~~GY~N~~T~KS-~~F~~D-~~v~tGSD~~~i~~WklP~~~  325 (609)
T KOG4227|consen  283 SDHNPNGYCNIKTIKS-MTFIDD-YTVATGSDHWGIHIWKLPRAN  325 (609)
T ss_pred             ccCCCCcceeeeeeee-eeeecc-eeeeccCcccceEEEecCCCc
Confidence            22 1112333333333 455544 448899999999999886544

>KOG0649|consensus

Probab=99.29  E-value=5.4e-10  Score=90.10  Aligned_cols=112  Identities=16%  Similarity=0.203  Sum_probs=86.4

Q ss_pred             EEEEEecCCeEEEecCCCccc----eeeEe--ecccc-----ccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEE
Q psy4650          48 YKISYQESSRVKAFNPIQVAT----LILKT--LYGHE-----KGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQ  116 (381)
Q Consensus        48 ~~~s~~~d~~v~i~~~~~~~~----~~~~~--l~~h~-----~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~  116 (381)
                      ++++|+. |.|+=|...+-..    ..+..  ..-|.     ..|+++-..|..+  -+..++.|+.+.-||+++|+..+
T Consensus        74 ~Lls~gd-G~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~en--Si~~AgGD~~~y~~dlE~G~i~r  150 (325)
T KOG0649|consen   74 FLLSGGD-GLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSEN--SILFAGGDGVIYQVDLEDGRIQR  150 (325)
T ss_pred             heeeccC-ceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCC--cEEEecCCeEEEEEEecCCEEEE
Confidence            5666665 9999886532111    11111  11233     4578888888655  47777799999999999999999


Q ss_pred             EeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEec
Q psy4650         117 TLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTY  162 (381)
Q Consensus       117 ~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~  162 (381)
                      +++||++.|+++.-......+++|+.||++|+||.++++.+..+..
T Consensus       151 ~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~  196 (325)
T KOG0649|consen  151 EYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEP  196 (325)
T ss_pred             EEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEecc
Confidence            9999999999999866777899999999999999999999887753

>KOG1587|consensus

Probab=99.29  E-value=3.7e-11  Score=111.98  Aligned_cols=206  Identities=14%  Similarity=0.074  Sum_probs=144.7

Q ss_pred             hhhcceeeeecCCCceEEEEEecCCeEEEecCCCccceee----EeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEE
Q psy4650          32 VRETKVDITTNKDMIEYKISYQESSRVKAFNPIQVATLIL----KTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIW  107 (381)
Q Consensus        32 ~~~~~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~----~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vw  107 (381)
                      .+.....+.+.+....+++.|..+|.|-+||.......+.    .....|..+++.+.|..+....-+++++.||.|+.|
T Consensus       241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W  320 (555)
T KOG1587|consen  241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSW  320 (555)
T ss_pred             cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeee
Confidence            3344456667777788999999999999999976443211    223468899999999875554458999999999999


Q ss_pred             ECCC---------------------------------------------CeE------------------EEEeccCCCC
Q psy4650         108 DYQN---------------------------------------------KTC------------------VQTLEGHGQN  124 (381)
Q Consensus       108 d~~~---------------------------------------------~~~------------------~~~~~~~~~~  124 (381)
                      +++.                                             |..                  ...+..|.++
T Consensus       321 ~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~  400 (555)
T KOG1587|consen  321 DTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGP  400 (555)
T ss_pred             eccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcc
Confidence            8753                                             100                  1123346788


Q ss_pred             EEEEEEecCCCEEEEEeCCCCEEEEeCC-CCeeeEEEecCCcceEEEEEcCCC-CEEEEEeCCCeEEEEecCCCceEEEe
Q psy4650         125 ISAVCFHPELPIVITGSEDGSVRVWHSG-THRLEISLTYGLERVWTISSLKGS-NNVAIGYDEGSVLLKVGREEPAVSMD  202 (381)
Q Consensus       125 v~~~~~~p~~~~l~s~~~d~~i~vwd~~-~~~~~~~~~~~~~~v~~v~~~~~~-~~l~~~~~dg~v~i~~~~~~~~~~~d  202 (381)
                      |.++.++|-+..+...+.|-++++|... ...++..+..+...|.+++|+|.. ..++++..||.+.+          ||
T Consensus       401 v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~i----------WD  470 (555)
T KOG1587|consen  401 VYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDI----------WD  470 (555)
T ss_pred             eEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceeh----------hh
Confidence            9999999988744444349999999988 666777777777889999999975 47788888999999          44


Q ss_pred             cC--CCEEEEEecCceeecccccCCccccccCCceEEeeehHHHHHhccCCCc
Q psy4650         203 VN--GCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSVHVTIKYRLDISD  253 (381)
Q Consensus       203 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~d~~~~~~d~~~  253 (381)
                      ..  ...++......   .  ..... ..+++.|+.++++...+..+++++..
T Consensus       471 Ll~~~~~Pv~s~~~~---~--~~l~~-~~~s~~g~~lavGd~~G~~~~~~l~~  517 (555)
T KOG1587|consen  471 LLQDDEEPVLSQKVC---S--PALTR-VRWSPNGKLLAVGDANGTTHILKLSE  517 (555)
T ss_pred             hhccccCCccccccc---c--cccce-eecCCCCcEEEEecCCCcEEEEEcCc
Confidence            42  22222111111   0  01111 34567799999999999988888753

>KOG0974|consensus

Probab=99.28  E-value=6e-11  Score=113.25  Aligned_cols=147  Identities=23%  Similarity=0.328  Sum_probs=123.5

Q ss_pred             eeecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEE-E
Q psy4650          39 ITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQ-T  117 (381)
Q Consensus        39 i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~-~  117 (381)
                      +.......-++++|+--+.+.+|.+......  ..+.||.+.|.++.|+.+|.  +++++|.|.++|+|++.+.+... +
T Consensus       138 ~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p--~~l~GHeG~iF~i~~s~dg~--~i~s~SdDRsiRlW~i~s~~~~~~~  213 (967)
T KOG0974|consen  138 IIGDSAEELYIASGSVFGEIIVWKPHEDNKP--IRLKGHEGSIFSIVTSLDGR--YIASVSDDRSIRLWPIDSREVLGCT  213 (967)
T ss_pred             EEeccCcEEEEEeccccccEEEEeccccCCc--ceecccCCceEEEEEccCCc--EEEEEecCcceeeeecccccccCcc
Confidence            3344455779999999999999999743322  26889999999999999877  89999999999999999987665 6


Q ss_pred             eccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEecCC-cceEEEEEcCCCCEEEEEeCCCeEEEEe
Q psy4650         118 LEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGL-ERVWTISSLKGSNNVAIGYDEGSVLLKV  192 (381)
Q Consensus       118 ~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~-~~v~~v~~~~~~~~l~~~~~dg~v~i~~  192 (381)
                      .-+|++.|..+.|.|.  .+++++.|-+.++|+....+ +..+..|. ..++.++..++...+++++.||.+++|.
T Consensus       214 ~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~~~~-l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~  286 (967)
T KOG0974|consen  214 GFGHSARVWACCFLPN--RIITVGEDCTCRVWGVNGTQ-LEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWD  286 (967)
T ss_pred             cccccceeEEEEeccc--eeEEeccceEEEEEecccce-ehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhh
Confidence            6789999999999998  89999999999999775444 44666654 4689999999999999999999999954

>KOG2111|consensus

Probab=99.28  E-value=3e-10  Score=95.02  Aligned_cols=136  Identities=15%  Similarity=0.220  Sum_probs=101.4

Q ss_pred             CeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEc-CCCeEEEEECCCCeE--EEEeccCCCCEEEEEEec
Q psy4650          56 SRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGA-DDRLVKIWDYQNKTC--VQTLEGHGQNISAVCFHP  132 (381)
Q Consensus        56 ~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~-~d~~v~vwd~~~~~~--~~~~~~~~~~v~~~~~~p  132 (381)
                      ++|++|...+. .+.++.+.....+=--++.+|..++.+||.-| .-|.|++-|+.....  ...+..|...|.|++.+.
T Consensus       113 ~~I~VytF~~n-~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~  191 (346)
T KOG2111|consen  113 NKIYVYTFPDN-PKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNL  191 (346)
T ss_pred             CeEEEEEcCCC-hhheeeeecccCCCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcC
Confidence            46777766432 22333333222111133344544555666544 468999999876654  477889999999999999


Q ss_pred             CCCEEEEEeCCCC-EEEEeCCCCeeeEEEec--CCcceEEEEEcCCCCEEEEEeCCCeEEEEe
Q psy4650         133 ELPIVITGSEDGS-VRVWHSGTHRLEISLTY--GLERVWTISSLKGSNNVAIGYDEGSVLLKV  192 (381)
Q Consensus       133 ~~~~l~s~~~d~~-i~vwd~~~~~~~~~~~~--~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~  192 (381)
                      +|..+|++|..|+ |||||..+|+.+..++.  ....+.+++|+|++.+|+++|+.|+++++.
T Consensus       192 ~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~  254 (346)
T KOG2111|consen  192 QGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFS  254 (346)
T ss_pred             CccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEE
Confidence            9999999999886 78999999999999875  345799999999999999999999999965

>KOG3881|consensus

Probab=99.28  E-value=1.4e-10  Score=99.39  Aligned_cols=161  Identities=12%  Similarity=0.093  Sum_probs=130.0

Q ss_pred             eeeeecCCCceEEEEEecC--CeEEEecCCCccceeeEeecccc-----------ccEEEEEeeeCCCccEEEEEcCCCe
Q psy4650          37 VDITTNKDMIEYKISYQES--SRVKAFNPIQVATLILKTLYGHE-----------KGVNCVDYYHGGDKPYLISGADDRL  103 (381)
Q Consensus        37 ~~i~~~~~~~~~~~s~~~d--~~v~i~~~~~~~~~~~~~l~~h~-----------~~v~~~~~~~~~~~~~l~s~~~d~~  103 (381)
                      +.+...+....++++|+..  ..+++||+++. .+   .+.+..           -.++++.|-+......|+++..-+.
T Consensus       152 ~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~-~q---iw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hq  227 (412)
T KOG3881|consen  152 YDVRQTDTDPYIVATGGKENINELKIWDLEQS-KQ---IWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQ  227 (412)
T ss_pred             eeeccCCCCCceEecCchhcccceeeeecccc-ee---eeeccCCCCccccceeeeeeccceecCCCCCceEEEEeccee
Confidence            3444455556677779988  89999999763 22   222211           2356788887633448999999999


Q ss_pred             EEEEECCCC-eEEEEeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEE-EecCCcceEEEEEcCCCCEEEE
Q psy4650         104 VKIWDYQNK-TCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEIS-LTYGLERVWTISSLKGSNNVAI  181 (381)
Q Consensus       104 v~vwd~~~~-~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~-~~~~~~~v~~v~~~~~~~~l~~  181 (381)
                      +++||.+.+ +++..+.--+.+++++...|++..+.+|..-+.+..||.+++..... +.+..+.++++..+|.++++++
T Consensus       228 vR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las  307 (412)
T KOG3881|consen  228 VRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLAS  307 (412)
T ss_pred             EEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEe
Confidence            999999876 47777777788999999999999999999999999999999998877 8888999999999999999999


Q ss_pred             EeCCCeEEEEecCCCceEEEecCCCEEEEE
Q psy4650         182 GYDEGSVLLKVGREEPAVSMDVNGCKIIWA  211 (381)
Q Consensus       182 ~~~dg~v~i~~~~~~~~~~~d~~~~~~~~~  211 (381)
                      |+-|..++|          +|..+.+++..
T Consensus       308 ~GLDRyvRI----------hD~ktrkll~k  327 (412)
T KOG3881|consen  308 CGLDRYVRI----------HDIKTRKLLHK  327 (412)
T ss_pred             eccceeEEE----------eecccchhhhh
Confidence            999999999          88877666543

>KOG2394|consensus

Probab=99.27  E-value=3.8e-11  Score=106.79  Aligned_cols=136  Identities=17%  Similarity=0.223  Sum_probs=106.3

Q ss_pred             eeeeecCCCceEEEEEecCCeEEEecCCC--------------ccceeeEeecc------------ccccEEEEEeeeCC
Q psy4650          37 VDITTNKDMIEYKISYQESSRVKAFNPIQ--------------VATLILKTLYG------------HEKGVNCVDYYHGG   90 (381)
Q Consensus        37 ~~i~~~~~~~~~~~s~~~d~~v~i~~~~~--------------~~~~~~~~l~~------------h~~~v~~~~~~~~~   90 (381)
                      -.+..-+.....++.+-.+|..++||..-              .....+.+-+.            -.+.|...+|+|||
T Consensus       223 T~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG  302 (636)
T KOG2394|consen  223 TCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDG  302 (636)
T ss_pred             EEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCC
Confidence            34444444445566667788889996421              00111111122            23578888999987


Q ss_pred             CccEEEEEcCCCeEEEEECCCCeEEEEeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEecCCcceEEE
Q psy4650          91 DKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTI  170 (381)
Q Consensus        91 ~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~v  170 (381)
                      .  +||+.|.||.+||+|+.+.+.+...+.-=++..|++|+|||+++++||+|-.|.||.+..++.+..-.+|.+.|..|
T Consensus       303 ~--~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~V  380 (636)
T KOG2394|consen  303 K--YLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVV  380 (636)
T ss_pred             c--eEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccccceeeE
Confidence            7  89999999999999999888777777666789999999999999999999999999999999999999999999999


Q ss_pred             EEcC
Q psy4650         171 SSLK  174 (381)
Q Consensus       171 ~~~~  174 (381)
                      +|.|
T Consensus       381 aFDp  384 (636)
T KOG2394|consen  381 AFDP  384 (636)
T ss_pred             eecc
Confidence            9996

>KOG4328|consensus

Probab=99.26  E-value=8.3e-11  Score=102.67  Aligned_cols=178  Identities=16%  Similarity=0.171  Sum_probs=125.7

Q ss_pred             eEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCe----EEEEeccCC
Q psy4650          47 EYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKT----CVQTLEGHG  122 (381)
Q Consensus        47 ~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~----~~~~~~~~~  122 (381)
                      ..++.+..-|...+||..... .....+.-|...|.+++++|-.. .+|+|||.|++++|||++...    ++.....|.
T Consensus       292 ~~vl~~~~~G~f~~iD~R~~~-s~~~~~~lh~kKI~sv~~NP~~p-~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~Hr  369 (498)
T KOG4328|consen  292 RSVLFGDNVGNFNVIDLRTDG-SEYENLRLHKKKITSVALNPVCP-WFLATASLDQTAKIWDLRQLRGKASPFLSTLPHR  369 (498)
T ss_pred             ccEEEeecccceEEEEeecCC-ccchhhhhhhcccceeecCCCCc-hheeecccCcceeeeehhhhcCCCCcceeccccc
Confidence            345566666688999987633 33456677889999999999655 389999999999999997642    223345699


Q ss_pred             CCEEEEEEecCCCEEEEEeCCCCEEEEeCC----CCeeeEEEecCCc------ceEEEEEcCCCCEEEEEeCCCeEEEEe
Q psy4650         123 QNISAVCFHPELPIVITGSEDGSVRVWHSG----THRLEISLTYGLE------RVWTISSLKGSNNVAIGYDEGSVLLKV  192 (381)
Q Consensus       123 ~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~----~~~~~~~~~~~~~------~v~~v~~~~~~~~l~~~~~dg~v~i~~  192 (381)
                      ..|.+..|+|.+..|++.+.|..|+|||..    .-.+...+. |..      ......|.|+..++++|-.-..|-+  
T Consensus       370 rsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~-Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv--  446 (498)
T KOG4328|consen  370 RSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIP-HNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDV--  446 (498)
T ss_pred             ceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceee-ccCcccccccchhheeCCCccEEEEeccCcceeE--
Confidence            999999999998889999999999999984    222233332 211      2445789999999998887777777  


Q ss_pred             cCCCceEEEecCCCEEEEEecCceeecccccCCccccccCCceEEeeeh
Q psy4650         193 GREEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSV  241 (381)
Q Consensus       193 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~  241 (381)
                              +|..+++.+..+..+    ...++....++.|-+..++.++
T Consensus       447 --------~~~~~~q~v~el~~P----~~~tI~~vn~~HP~~~~~~aG~  483 (498)
T KOG4328|consen  447 --------FDGNGGQMVCELHDP----ESSTIPSVNEFHPMRDTLAAGG  483 (498)
T ss_pred             --------EcCCCCEEeeeccCc----cccccccceeecccccceeccC
Confidence                    888888877665443    2222333334556666444444

>KOG2139|consensus

Probab=99.26  E-value=9.6e-10  Score=93.55  Aligned_cols=168  Identities=12%  Similarity=0.122  Sum_probs=111.0

Q ss_pred             cccccCCChhhHHHHhh-hcceeeeecCCCceEEEEEecCCeEEEecCCCcc--ce----------eeEeeccccccEEE
Q psy4650          17 RALNTELTETDIETIVR-ETKVDITTNKDMIEYKISYQESSRVKAFNPIQVA--TL----------ILKTLYGHEKGVNC   83 (381)
Q Consensus        17 ~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~--~~----------~~~~l~~h~~~v~~   83 (381)
                      |+.-.++++|-..+-.. ...-++..-|.....+ +.+..+.|.+|......  ..          .+...+|| .+|++
T Consensus       123 riy~ksst~pt~Lks~sQrnvtclawRPlsasel-avgCr~gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVts  200 (445)
T KOG2139|consen  123 RIYDKSSTCPTKLKSVSQRNVTCLAWRPLSASEL-AVGCRAGICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTS  200 (445)
T ss_pred             EEeccCCCCCceecchhhcceeEEEeccCCccee-eeeecceeEEEEcCcccccccccccccccchhheeCCCC-ceeeE
Confidence            44455556664433333 3334555666544433 33445579999764211  11          11223455 78999


Q ss_pred             EEeeeCCCccEEEEEc-CCCeEEEEECCCCeEEEEeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEec
Q psy4650          84 VDYYHGGDKPYLISGA-DDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTY  162 (381)
Q Consensus        84 ~~~~~~~~~~~l~s~~-~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~  162 (381)
                      +.|.+||.  .+++++ .|..+++||..++..+....-..+++.-+.|+|++.++.++..|+..++|.............
T Consensus       201 mqwn~dgt--~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~l  278 (445)
T KOG2139|consen  201 MQWNEDGT--ILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWIL  278 (445)
T ss_pred             EEEcCCCC--EEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceec
Confidence            99999988  577776 477899999999876554433456789999999999999999999999996543322222333


Q ss_pred             CCcceEEEEEcCCCCEEEEEeCCCeE
Q psy4650         163 GLERVWTISSLKGSNNVAIGYDEGSV  188 (381)
Q Consensus       163 ~~~~v~~v~~~~~~~~l~~~~~dg~v  188 (381)
                      ..+.|...+|+|+|+.|...+.....
T Consensus       279 gsgrvqtacWspcGsfLLf~~sgsp~  304 (445)
T KOG2139|consen  279 GSGRVQTACWSPCGSFLLFACSGSPR  304 (445)
T ss_pred             cCCceeeeeecCCCCEEEEEEcCCce
Confidence            45699999999999977665544333

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.26  E-value=1.1e-09  Score=101.14  Aligned_cols=191  Identities=20%  Similarity=0.334  Sum_probs=142.2

Q ss_pred             ceEEEEEecCCeEEEecCCCccceeeEeeccccc-cEEEEEe-eeCCCccEEEEE-cCCCeEEEEECCC-CeEEEEeccC
Q psy4650          46 IEYKISYQESSRVKAFNPIQVATLILKTLYGHEK-GVNCVDY-YHGGDKPYLISG-ADDRLVKIWDYQN-KTCVQTLEGH  121 (381)
Q Consensus        46 ~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~-~v~~~~~-~~~~~~~~l~s~-~~d~~v~vwd~~~-~~~~~~~~~~  121 (381)
                      ...++.++.++.+.+|+..... .....+.++.. .+..+.+ ++++.. .++.. ..|+.+.+|+... ......+..|
T Consensus        77 ~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~  154 (466)
T COG2319          77 GELLLSGSSDGTIKLWDLDNGE-KLIKSLEGLHDSSVSKLALSSPDGNS-ILLASSSLDGTVKLWDLSTPGKLIRTLEGH  154 (466)
T ss_pred             CcEEEEecCCCcEEEEEcCCCc-eeEEEEeccCCCceeeEEEECCCcce-EEeccCCCCccEEEEEecCCCeEEEEEecC
Confidence            5577777889999999986432 25566666443 7777777 555542 44443 4499999999998 7778889999


Q ss_pred             CCCEEEEEEecCCCEEEEEeC-CCCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCC-EEEEEeCCCeEEEEecCCCceE
Q psy4650         122 GQNISAVCFHPELPIVITGSE-DGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSN-NVAIGYDEGSVLLKVGREEPAV  199 (381)
Q Consensus       122 ~~~v~~~~~~p~~~~l~s~~~-d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~-~l~~~~~dg~v~i~~~~~~~~~  199 (381)
                      ...|..++|+|++..+++++. |+.+++|+...+..+..+.+|...+.++.|+|++. .+++++.|+.+++         
T Consensus       155 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~---------  225 (466)
T COG2319         155 SESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRL---------  225 (466)
T ss_pred             cccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEE---------
Confidence            999999999999998888885 99999999999888999998999999999999998 5555589999998         


Q ss_pred             EEecCCCEEEE-EecCceeecccccCCccccccCCceEEeeehHHHHHhccCCCcCh
Q psy4650         200 SMDVNGCKIIW-ARHSEVQQANLKTMPEVFENITAGVVLTLSVHVTIKYRLDISDSH  255 (381)
Q Consensus       200 ~~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~d~~~~~~d~~~~~  255 (381)
                       ||...+..+. ....+.... +.      .|++++..+..+..+.....|+.....
T Consensus       226 -wd~~~~~~~~~~~~~~~~~~-~~------~~~~~~~~~~~~~~d~~~~~~~~~~~~  274 (466)
T COG2319         226 -WDLSTGKLLRSTLSGHSDSV-VS------SFSPDGSLLASGSSDGTIRLWDLRSSS  274 (466)
T ss_pred             -EECCCCcEEeeecCCCCcce-eE------eECCCCCEEEEecCCCcEEEeeecCCC
Confidence             4444344333 122111111 11      466788777788888888888876543

>KOG0650|consensus

Probab=99.25  E-value=9.4e-11  Score=105.61  Aligned_cols=178  Identities=18%  Similarity=0.256  Sum_probs=115.8

Q ss_pred             eeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEEEeccCCCCEEEEEEecCCC--EEEEEeCCC--
Q psy4650          69 LILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELP--IVITGSEDG--  144 (381)
Q Consensus        69 ~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~p~~~--~l~s~~~d~--  144 (381)
                      .+...++||++.|.|+...|.|.  +|++|+.||+|+||.+.+|.+++++. ..+.|.|++|+|.+.  .||.+-...  
T Consensus       391 ~~~lvyrGHtg~Vr~iSvdp~G~--wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~~~~  467 (733)
T KOG0650|consen  391 RCALVYRGHTGLVRSISVDPSGE--WLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGECVL  467 (733)
T ss_pred             eeeeeEeccCCeEEEEEecCCcc--eeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEecCceE
Confidence            34456789999999999999887  89999999999999999998887765 234677777777554  333222111  


Q ss_pred             ------------------------------CEEEE---------------------------------------------
Q psy4650         145 ------------------------------SVRVW---------------------------------------------  149 (381)
Q Consensus       145 ------------------------------~i~vw---------------------------------------------  149 (381)
                                                    .+..|                                             
T Consensus       468 ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~  547 (733)
T KOG0650|consen  468 IVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKS  547 (733)
T ss_pred             EeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcce
Confidence                                          11222                                             


Q ss_pred             ----eCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCceEEEecCCCEEEEEecCceeecccccCC
Q psy4650         150 ----HSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKVGREEPAVSMDVNGCKIIWARHSEVQQANLKTMP  225 (381)
Q Consensus       150 ----d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~  225 (381)
                          ++..+....-+....+.+.++.|+|...++.+++. ..|++          ||...+.++-.+...     ..-++
T Consensus       548 VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRi----------YdL~kqelvKkL~tg-----~kwiS  611 (733)
T KOG0650|consen  548 VLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRI----------YDLSKQELVKKLLTG-----SKWIS  611 (733)
T ss_pred             EEEEecccccccCchhhcCCceeEEEecCCCceEEEEec-cceEE----------EehhHHHHHHHHhcC-----Ceeee
Confidence                22111111111123346888999998888877764 44555          776443322111111     11111


Q ss_pred             ccccccCCceEEeeehHHHHHhccCCCcChhHHHHHHHHHh
Q psy4650         226 EVFENITAGVVLTLSVHVTIKYRLDISDSHRSVAKLRAAAE  266 (381)
Q Consensus       226 ~~~~~~~dg~~l~~~~~d~~~~~~d~~~~~~~~~~l~~~~e  266 (381)
                      . ++..|.|..+.+++.+++...+|+..+.++.++|+.+..
T Consensus       612 ~-msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~  651 (733)
T KOG0650|consen  612 S-MSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEK  651 (733)
T ss_pred             e-eeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhh
Confidence            1 456689999999999988888898888888888877644

>KOG4227|consensus

Probab=99.25  E-value=1.8e-10  Score=98.86  Aligned_cols=125  Identities=19%  Similarity=0.265  Sum_probs=105.7

Q ss_pred             eeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCC------CeEEEEecc-CCCCEEEEEEecCCCEEEEEeC
Q psy4650          70 ILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQN------KTCVQTLEG-HGQNISAVCFHPELPIVITGSE  142 (381)
Q Consensus        70 ~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~------~~~~~~~~~-~~~~v~~~~~~p~~~~l~s~~~  142 (381)
                      +...+.+|.+.|.++.|+.++.  +|++|+.|..+++|.+..      .+++..... |...|.|++|......+.+|+.
T Consensus        48 ~qKD~~~H~GCiNAlqFS~N~~--~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~  125 (609)
T KOG4227|consen   48 CQKDVREHTGCINALQFSHNDR--FLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGER  125 (609)
T ss_pred             hhhhhhhhccccceeeeccCCe--EEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCC
Confidence            3445779999999999998754  999999999999999853      355655543 4588999999999999999999


Q ss_pred             CCCEEEEeCCCCeeeEEEec--CCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCC
Q psy4650         143 DGSVRVWHSGTHRLEISLTY--GLERVWTISSLKGSNNVAIGYDEGSVLLKVGREE  196 (381)
Q Consensus       143 d~~i~vwd~~~~~~~~~~~~--~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~~~~~  196 (381)
                      +++|.+-|+.+.+.+..+..  ..+.|+.+..+|..+.+++.+.++.|.+|+.++.
T Consensus       126 ~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~  181 (609)
T KOG4227|consen  126 WGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDR  181 (609)
T ss_pred             cceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCC
Confidence            99999999999988887753  3458999999999999999999999999776553

>KOG1524|consensus

Probab=99.25  E-value=1.1e-10  Score=103.91  Aligned_cols=148  Identities=10%  Similarity=0.190  Sum_probs=104.2

Q ss_pred             hHHHHhhhcceeeee---cCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCe
Q psy4650          27 DIETIVRETKVDITT---NKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRL  103 (381)
Q Consensus        27 ~~~~~~~~~~~~i~~---~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~  103 (381)
                      .+++...-|+-++.+   +++ +.-+++++.||.|++|.-   +.+.-.++-....+|.|++|.|+.+. .+.+.+..  
T Consensus        95 rVE~sv~AH~~A~~~gRW~~d-GtgLlt~GEDG~iKiWSr---sGMLRStl~Q~~~~v~c~~W~p~S~~-vl~c~g~h--  167 (737)
T KOG1524|consen   95 RVERSISAHAAAISSGRWSPD-GAGLLTAGEDGVIKIWSR---SGMLRSTVVQNEESIRCARWAPNSNS-IVFCQGGH--  167 (737)
T ss_pred             hhhhhhhhhhhhhhhcccCCC-CceeeeecCCceEEEEec---cchHHHHHhhcCceeEEEEECCCCCc-eEEecCCe--
Confidence            466666666666654   345 557889999999999986   35555566677889999999998874 55555543  


Q ss_pred             EEEEECCCCeEEEEeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEe
Q psy4650         104 VKIWDYQNKTCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGY  183 (381)
Q Consensus       104 v~vwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~  183 (381)
                      +.+=-+.....+-..+.|.+-|.++.|+|....+++||.|-..++||..+ ..+..-..|..++++++|.|+ ..++.++
T Consensus       168 ~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G-~~Lf~S~~~ey~ITSva~npd-~~~~v~S  245 (737)
T KOG1524|consen  168 ISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQG-ANLFTSAAEEYAITSVAFNPE-KDYLLWS  245 (737)
T ss_pred             EEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccC-cccccCChhccceeeeeeccc-cceeeee
Confidence            44434444444566789999999999999999999999999999999753 334333345555555555555 3333333

>KOG1188|consensus

Probab=99.22  E-value=2.6e-10  Score=96.17  Aligned_cols=145  Identities=17%  Similarity=0.263  Sum_probs=108.7

Q ss_pred             CceEEEEEecCCeEEEecCCCccceeeEeecccc-ccEEEEEeeeCCCccEEEEEc----CCCeEEEEECCCCeE-EEEe
Q psy4650          45 MIEYKISYQESSRVKAFNPIQVATLILKTLYGHE-KGVNCVDYYHGGDKPYLISGA----DDRLVKIWDYQNKTC-VQTL  118 (381)
Q Consensus        45 ~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~-~~v~~~~~~~~~~~~~l~s~~----~d~~v~vwd~~~~~~-~~~~  118 (381)
                      ....+.+++.||+|++||++...........+|. .+..|++....+.  .+++|.    .+..|.+||++..+. ++.+
T Consensus        83 s~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~--ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~  160 (376)
T KOG1188|consen   83 SPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKN--IIACGTELTRSDASVVLWDVRSEQQLLRQL  160 (376)
T ss_pred             CCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCC--eEEeccccccCceEEEEEEeccccchhhhh
Confidence            5678999999999999999765555555666676 4566776654333  677664    377899999998765 5554


Q ss_pred             -ccCCCCEEEEEEecCCC-EEEEEeCCCCEEEEeCCCCee----eEEEecCCcceEEEEEcCCC-CEEEEEeCCCeEEEE
Q psy4650         119 -EGHGQNISAVCFHPELP-IVITGSEDGSVRVWHSGTHRL----EISLTYGLERVWTISSLKGS-NNVAIGYDEGSVLLK  191 (381)
Q Consensus       119 -~~~~~~v~~~~~~p~~~-~l~s~~~d~~i~vwd~~~~~~----~~~~~~~~~~v~~v~~~~~~-~~l~~~~~dg~v~i~  191 (381)
                       ..|.+.|+++.|+|..+ .|++|+.||.|.+||+.....    +.+++ +...|.++.|+.++ +.+.+-+..+.+.+|
T Consensus       161 ~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN-~~sSI~~igw~~~~ykrI~clTH~Etf~~~  239 (376)
T KOG1188|consen  161 NESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVIN-HGSSIHLIGWLSKKYKRIMCLTHMETFAIY  239 (376)
T ss_pred             hhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhc-ccceeeeeeeecCCcceEEEEEccCceeEE
Confidence             56999999999999775 899999999999999975421    22233 55678999999876 356777778888885


Q ss_pred             e
Q psy4650         192 V  192 (381)
Q Consensus       192 ~  192 (381)
                      .
T Consensus       240 e  240 (376)
T KOG1188|consen  240 E  240 (376)
T ss_pred             E
Confidence            4

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.21  E-value=5.7e-10  Score=103.92  Aligned_cols=188  Identities=13%  Similarity=0.129  Sum_probs=117.9

Q ss_pred             ceeeeecCCCceEEEEEec--CCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEE-cCCCeEEEE--ECC
Q psy4650          36 KVDITTNKDMIEYKISYQE--SSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISG-ADDRLVKIW--DYQ  110 (381)
Q Consensus        36 ~~~i~~~~~~~~~~~s~~~--d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~-~~d~~v~vw--d~~  110 (381)
                      .....+++++..+.++...  +..+++||+.......+..+.+|.   .+++|+|+|.  .|+.+ +.+|...+|  |..
T Consensus       206 v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~---~~~~wSPDG~--~La~~~~~~g~~~Iy~~d~~  280 (429)
T PRK01742        206 LMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHN---GAPAFSPDGS--RLAFASSKDGVLNIYVMGAN  280 (429)
T ss_pred             cccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCcc---CceeECCCCC--EEEEEEecCCcEEEEEEECC
Confidence            3456677776555444332  247999998754444555555554   3689999987  56554 567876655  666


Q ss_pred             CCeEEEEeccCCCCEEEEEEecCCCEEEEEe-CCCCEEEEeCCCCe-eeEEEecCCcceEEEEEcCCCCEEEEEeCCCeE
Q psy4650         111 NKTCVQTLEGHGQNISAVCFHPELPIVITGS-EDGSVRVWHSGTHR-LEISLTYGLERVWTISSLKGSNNVAIGYDEGSV  188 (381)
Q Consensus       111 ~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~-~d~~i~vwd~~~~~-~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v  188 (381)
                      ++.. ..+..+...+....|+|+|+.++.++ .++...||++.... ....+ .+..  ....|+|+|+.++..+.++.+
T Consensus       281 ~~~~-~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~SpDG~~ia~~~~~~i~  356 (429)
T PRK01742        281 GGTP-SQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG--YSAQISADGKTLVMINGDNVV  356 (429)
T ss_pred             CCCe-EeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC--CCccCCCCCCEEEEEcCCCEE
Confidence            6653 44555666788999999999776554 57888888765322 12222 2322  457899999999888765433


Q ss_pred             EEEecCCCceEEEecCCCEEEEEecCceeecccccCCccccccCCceEEeeehHHHHHhccCC
Q psy4650         189 LLKVGREEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSVHVTIKYRLDI  251 (381)
Q Consensus       189 ~i~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~d~~~~~~d~  251 (381)
                      .           ||..++....-...      ...  ....|+|||+.+++++.++....|.+
T Consensus       357 ~-----------~Dl~~g~~~~lt~~------~~~--~~~~~sPdG~~i~~~s~~g~~~~l~~  400 (429)
T PRK01742        357 K-----------QDLTSGSTEVLSST------FLD--ESPSISPNGIMIIYSSTQGLGKVLQL  400 (429)
T ss_pred             E-----------EECCCCCeEEecCC------CCC--CCceECCCCCEEEEEEcCCCceEEEE
Confidence            3           67666543211111      001  11468999999999887766665554

>KOG0650|consensus

Probab=99.20  E-value=7.9e-11  Score=106.09  Aligned_cols=153  Identities=20%  Similarity=0.219  Sum_probs=123.7

Q ss_pred             hhcceeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCC
Q psy4650          33 RETKVDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNK  112 (381)
Q Consensus        33 ~~~~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~  112 (381)
                      +-++..+.+++-...++++...  .|++||+..  ..++..+......|.+++.+|.|+  .|+.|+.|+.+..+|+.-.
T Consensus       566 kG~vq~v~FHPs~p~lfVaTq~--~vRiYdL~k--qelvKkL~tg~kwiS~msihp~GD--nli~gs~d~k~~WfDldls  639 (733)
T KOG0650|consen  566 KGLVQRVKFHPSKPYLFVATQR--SVRIYDLSK--QELVKKLLTGSKWISSMSIHPNGD--NLILGSYDKKMCWFDLDLS  639 (733)
T ss_pred             CCceeEEEecCCCceEEEEecc--ceEEEehhH--HHHHHHHhcCCeeeeeeeecCCCC--eEEEecCCCeeEEEEcccC
Confidence            3566788888876655555443  899999963  444555666677899999999998  5889999999999999755


Q ss_pred             -eEEEEeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCC------C---eeeEEEecCCcc----eEEEEEcCCCCE
Q psy4650         113 -TCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGT------H---RLEISLTYGLER----VWTISSLKGSNN  178 (381)
Q Consensus       113 -~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~------~---~~~~~~~~~~~~----v~~v~~~~~~~~  178 (381)
                       ++.++++-|...+.+++||+.-+++++|+.||++.|+.-.-      .   -++..+.+|...    |..+.|||...+
T Consensus       640 skPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpW  719 (733)
T KOG0650|consen  640 SKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPW  719 (733)
T ss_pred             cchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCce
Confidence             56788888999999999999999999999999999995431      1   134556676554    889999999999


Q ss_pred             EEEEeCCCeEEEE
Q psy4650         179 VAIGYDEGSVLLK  191 (381)
Q Consensus       179 l~~~~~dg~v~i~  191 (381)
                      |.+++.||++++|
T Consensus       720 LfsAGAd~tirlf  732 (733)
T KOG0650|consen  720 LFSAGADGTIRLF  732 (733)
T ss_pred             EEecCCCceEEee
Confidence            9999999999995

>KOG0644|consensus

Probab=99.19  E-value=7.8e-12  Score=116.43  Aligned_cols=117  Identities=28%  Similarity=0.496  Sum_probs=108.0

Q ss_pred             EeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEEEeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeC
Q psy4650          72 KTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHS  151 (381)
Q Consensus        72 ~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~  151 (381)
                      ..|.||...|+|+.|...|.  ++++|+.|..|+||...++.++..+.||.+.++.++.+.....+++++.|..|++|.+
T Consensus       184 krLlgH~naVyca~fDrtg~--~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl  261 (1113)
T KOG0644|consen  184 KRLLGHRNAVYCAIFDRTGR--YIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRL  261 (1113)
T ss_pred             HHHHhhhhheeeeeeccccc--eEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEec
Confidence            44568999999999977555  8999999999999999999999999999999999999988889999999999999999


Q ss_pred             CCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCCCeEEEEecC
Q psy4650         152 GTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKVGR  194 (381)
Q Consensus       152 ~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~~~  194 (381)
                      ..+.++..+.+|++.|++++|+|-.    +.+.||++++|+.+
T Consensus       262 ~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r  300 (1113)
T KOG0644|consen  262 PDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDAR  300 (1113)
T ss_pred             CCCchHHHHhccccceeeeccCccc----cCCCCCceEecccc
Confidence            9999999999999999999999974    67889999998866

>KOG0974|consensus

Probab=99.19  E-value=8.7e-10  Score=105.50  Aligned_cols=184  Identities=13%  Similarity=0.124  Sum_probs=135.5

Q ss_pred             eEEEEEecCCeEEEecCCCccceeeEeeccccccE---EEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEEEeccCCC
Q psy4650          47 EYKISYQESSRVKAFNPIQVATLILKTLYGHEKGV---NCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQ  123 (381)
Q Consensus        47 ~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v---~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~  123 (381)
                      ..++.+..++.+.+|+...  ..++..+. +....   .++-+-...+..++++|+.-+.+.+|+....+.-..+.+|.+
T Consensus       100 k~i~l~~~~ns~~i~d~~~--~~~~~~i~-~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG  176 (967)
T KOG0974|consen  100 KKIALVTSRNSLLIRDSKN--SSVLSKIQ-SDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEG  176 (967)
T ss_pred             ceEEEEEcCceEEEEeccc--CceehhcC-CCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcceecccCC
Confidence            3555666677899999853  33344443 23222   122222233455899999999999999874333336889999


Q ss_pred             CEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeE-EEecCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCceEEEe
Q psy4650         124 NISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEI-SLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKVGREEPAVSMD  202 (381)
Q Consensus       124 ~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~-~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~~~~~~~~~~d  202 (381)
                      .+..+.|+.+|.++++.+.|+++|+|++.+++... ..-+|+.+|+.++++|+  .+++++.|-+.++|.-.......|+
T Consensus       177 ~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~~~~l~~y~  254 (967)
T KOG0974|consen  177 SIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVNGTQLEVYD  254 (967)
T ss_pred             ceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEEEEEecccceehhhh
Confidence            99999999999999999999999999999988776 66679999999999999  8999999999999976666666777


Q ss_pred             cCCCEEEEEecCceeecccccCCccccccCCceEEeeehHHHHHhccCC
Q psy4650         203 VNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSVHVTIKYRLDI  251 (381)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~d~~~~~~d~  251 (381)
                      .+.++.+|...-.                ++.....++..|.....|+.
T Consensus       255 ~h~g~~iw~~~~~----------------~~~~~~vT~g~Ds~lk~~~l  287 (967)
T KOG0974|consen  255 EHSGKGIWKIAVP----------------IGVIIKVTGGNDSTLKLWDL  287 (967)
T ss_pred             hhhhcceeEEEEc----------------CCceEEEeeccCcchhhhhh
Confidence            7777777775332                34455556666665555554

>KOG2139|consensus

Probab=99.18  E-value=1.2e-09  Score=92.91  Aligned_cols=139  Identities=14%  Similarity=0.183  Sum_probs=103.4

Q ss_pred             eEEEEEecCCeEEEecCCCccceeeEeecc-ccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCC----e--------
Q psy4650          47 EYKISYQESSRVKAFNPIQVATLILKTLYG-HEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNK----T--------  113 (381)
Q Consensus        47 ~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~-h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~----~--------  113 (381)
                      .-++.+..|..|++|+-.....   ..++. -...|+|++|-|.+.. .|+.|. -+-|.+|.....    .        
T Consensus       111 ~~fava~nddvVriy~ksst~p---t~Lks~sQrnvtclawRPlsas-elavgC-r~gIciW~~s~tln~~r~~~~~s~~  185 (445)
T KOG2139|consen  111 IAFAVATNDDVVRIYDKSSTCP---TKLKSVSQRNVTCLAWRPLSAS-ELAVGC-RAGICIWSDSRTLNANRNIRMMSTH  185 (445)
T ss_pred             hhhhhhccCcEEEEeccCCCCC---ceecchhhcceeEEEeccCCcc-eeeeee-cceeEEEEcCccccccccccccccc
Confidence            3456677788999999754222   23332 2467999999997764 555554 455788976431    1        


Q ss_pred             --EEEEeccCCCCEEEEEEecCCCEEEEEeC-CCCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCCCeEEE
Q psy4650         114 --CVQTLEGHGQNISAVCFHPELPIVITGSE-DGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLL  190 (381)
Q Consensus       114 --~~~~~~~~~~~v~~~~~~p~~~~l~s~~~-d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i  190 (381)
                        .+....+| .+|+++.|++||..+++++- |..|.|||..+|...--....-+.++-+.|+|+|.++.++.-|+..++
T Consensus       186 ~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrl  264 (445)
T KOG2139|consen  186 HLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRL  264 (445)
T ss_pred             chhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeee
Confidence              12223455 68999999999999988865 789999999998876555455677888999999999999999999999


Q ss_pred             E
Q psy4650         191 K  191 (381)
Q Consensus       191 ~  191 (381)
                      |
T Consensus       265 w  265 (445)
T KOG2139|consen  265 W  265 (445)
T ss_pred             e
Confidence            7

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.18  E-value=2.1e-09  Score=88.36  Aligned_cols=101  Identities=18%  Similarity=0.089  Sum_probs=75.3

Q ss_pred             CCCCEEEEEEecCCCEEEE--EeCCCCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeC---CCeEEEEecCC
Q psy4650         121 HGQNISAVCFHPELPIVIT--GSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYD---EGSVLLKVGRE  195 (381)
Q Consensus       121 ~~~~v~~~~~~p~~~~l~s--~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~---dg~v~i~~~~~  195 (381)
                      ..++|.+++|+|+|..++.  |..++.+.+||+. ++.+..+.  ...+..+.|+|+|+++++++.   .|.+.+     
T Consensus        58 ~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~-----  129 (194)
T PF08662_consen   58 KEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEF-----  129 (194)
T ss_pred             CCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEE-----
Confidence            3457999999999997654  4457899999996 55565553  467789999999999999874   366888     


Q ss_pred             CceEEEecCCCEEEEEecCceeecccccCCccccccCCceEEeeehH
Q psy4650         196 EPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSVH  242 (381)
Q Consensus       196 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~  242 (381)
                           ||..+...+.......        ...++|+|||++++++..
T Consensus       130 -----wd~~~~~~i~~~~~~~--------~t~~~WsPdGr~~~ta~t  163 (194)
T PF08662_consen  130 -----WDVRKKKKISTFEHSD--------ATDVEWSPDGRYLATATT  163 (194)
T ss_pred             -----EECCCCEEeeccccCc--------EEEEEEcCCCCEEEEEEe
Confidence                 8887777665443221        112689999999998875

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.14  E-value=2.5e-09  Score=99.67  Aligned_cols=171  Identities=14%  Similarity=0.109  Sum_probs=113.8

Q ss_pred             CCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCC---CeEEEEECCCCeE--EEEeccCCCCEEEEE
Q psy4650          55 SSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADD---RLVKIWDYQNKTC--VQTLEGHGQNISAVC  129 (381)
Q Consensus        55 d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d---~~v~vwd~~~~~~--~~~~~~~~~~v~~~~  129 (381)
                      +..+.+||.....   .+.+..|...+.++.|+|+|.  .|+.++.+   ..|.+||+.++..  +..+.+|   ...++
T Consensus       183 ~~~i~i~d~dg~~---~~~lt~~~~~v~~p~wSPDG~--~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~  254 (429)
T PRK01742        183 PYEVRVADYDGFN---QFIVNRSSQPLMSPAWSPDGS--KLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPA  254 (429)
T ss_pred             eEEEEEECCCCCC---ceEeccCCCccccceEcCCCC--EEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCcee
Confidence            4689999985322   355678888999999999988  56665543   4799999988753  3334443   34689


Q ss_pred             EecCCCEEEEEe-CCCCEEEE--eCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEe-CCCeEEEEecCCCceEEEecCC
Q psy4650         130 FHPELPIVITGS-EDGSVRVW--HSGTHRLEISLTYGLERVWTISSLKGSNNVAIGY-DEGSVLLKVGREEPAVSMDVNG  205 (381)
Q Consensus       130 ~~p~~~~l~s~~-~d~~i~vw--d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~-~dg~v~i~~~~~~~~~~~d~~~  205 (381)
                      |+|+|+.++.++ .+|...||  |+.++.. ..+..+...+....|+|+|+.++.++ .+|...+|.        ++..+
T Consensus       255 wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~--------~~~~~  325 (429)
T PRK01742        255 FSPDGSRLAFASSKDGVLNIYVMGANGGTP-SQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYR--------MSASG  325 (429)
T ss_pred             ECCCCCEEEEEEecCCcEEEEEEECCCCCe-EeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEE--------EECCC
Confidence            999999887764 57776655  6666653 44555666788899999999877665 467777754        45544


Q ss_pred             CEEEEEecCceeecccccCCccccccCCceEEeeehHHHHHhccCCCc
Q psy4650         206 CKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSVHVTIKYRLDISD  253 (381)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~d~~~~~~d~~~  253 (381)
                      +.....  ..      .+..  ..++|||+.+++...+ ....||+..
T Consensus       326 ~~~~~l--~~------~~~~--~~~SpDG~~ia~~~~~-~i~~~Dl~~  362 (429)
T PRK01742        326 GGASLV--GG------RGYS--AQISADGKTLVMINGD-NVVKQDLTS  362 (429)
T ss_pred             CCeEEe--cC------CCCC--ccCCCCCCEEEEEcCC-CEEEEECCC
Confidence            432111  11      0111  3578999999887664 344466644

>KOG2111|consensus

Probab=99.14  E-value=7.1e-09  Score=86.93  Aligned_cols=104  Identities=14%  Similarity=0.310  Sum_probs=87.2

Q ss_pred             EEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCe-EEEEECCCCeEEEEecc--CCCC
Q psy4650          48 YKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRL-VKIWDYQNKTCVQTLEG--HGQN  124 (381)
Q Consensus        48 ~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~-v~vwd~~~~~~~~~~~~--~~~~  124 (381)
                      +..-|-.-|.|.+-|+.......-..+.+|...|.|++.+.+|.  ++||+|..|+ |||||..+|..+.+++.  ..+.
T Consensus       151 LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt--~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~  228 (346)
T KOG2111|consen  151 LAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGT--LVATASTKGTLIRIFDTEDGTLLQELRRGVDRAD  228 (346)
T ss_pred             EEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCcc--EEEEeccCcEEEEEEEcCCCcEeeeeecCCchhe
Confidence            33456667889999886544433467889999999999999887  8999999998 67999999999998854  2357


Q ss_pred             EEEEEEecCCCEEEEEeCCCCEEEEeCCC
Q psy4650         125 ISAVCFHPELPIVITGSEDGSVRVWHSGT  153 (381)
Q Consensus       125 v~~~~~~p~~~~l~s~~~d~~i~vwd~~~  153 (381)
                      |.|++|+|++.+|+.+|.-|++.++.++.
T Consensus       229 iy~iaFSp~~s~LavsSdKgTlHiF~l~~  257 (346)
T KOG2111|consen  229 IYCIAFSPNSSWLAVSSDKGTLHIFSLRD  257 (346)
T ss_pred             EEEEEeCCCccEEEEEcCCCeEEEEEeec
Confidence            99999999999999999999999998874

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.12  E-value=8.1e-09  Score=93.04  Aligned_cols=201  Identities=12%  Similarity=0.105  Sum_probs=123.6

Q ss_pred             cceeeeecCCCceEEEEEecCCeEEEecCCCccc--eeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCC
Q psy4650          35 TKVDITTNKDMIEYKISYQESSRVKAFNPIQVAT--LILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNK  112 (381)
Q Consensus        35 ~~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~--~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~  112 (381)
                      .+.-+...+++..+.++...++.+.+|++.+...  ..+..+.+ .....+++++|++.. ++++...++.|.+||+.+.
T Consensus        81 ~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~-~~~~~~~~~~p~g~~-l~v~~~~~~~v~v~d~~~~  158 (330)
T PRK11028         81 SPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEG-LEGCHSANIDPDNRT-LWVPCLKEDRIRLFTLSDD  158 (330)
T ss_pred             CceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccC-CCcccEeEeCCCCCE-EEEeeCCCCEEEEEEECCC
Confidence            4667778877665555555688999999853211  12233332 345677889998763 4467778899999999763


Q ss_pred             eEEE-------EeccCCCCEEEEEEecCCCEEEEEeC-CCCEEEEeCCC--Ce--eeEEEecC------CcceEEEEEcC
Q psy4650         113 TCVQ-------TLEGHGQNISAVCFHPELPIVITGSE-DGSVRVWHSGT--HR--LEISLTYG------LERVWTISSLK  174 (381)
Q Consensus       113 ~~~~-------~~~~~~~~v~~~~~~p~~~~l~s~~~-d~~i~vwd~~~--~~--~~~~~~~~------~~~v~~v~~~~  174 (381)
                      ..+.       ... .......+.|+|++++++++.. ++.|.+||+..  ++  ....+...      ......+.++|
T Consensus       159 g~l~~~~~~~~~~~-~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~p  237 (330)
T PRK11028        159 GHLVAQEPAEVTTV-EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITP  237 (330)
T ss_pred             CcccccCCCceecC-CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECC
Confidence            2221       111 1234578999999998877766 89999999973  33  23333221      11234688999


Q ss_pred             CCCEEEEEeC-CCeEEEEecCCCceEEEecCCCEEEEEecCceeecccccCCccccccCCceEEeeehH-HHHHhccCC
Q psy4650         175 GSNNVAIGYD-EGSVLLKVGREEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSVH-VTIKYRLDI  251 (381)
Q Consensus       175 ~~~~l~~~~~-dg~v~i~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~-d~~~~~~d~  251 (381)
                      ++++++++.. ++.+.+|.        ++.+++......  ...   .......+.++|||++++++.. ++....|++
T Consensus       238 dg~~lyv~~~~~~~I~v~~--------i~~~~~~~~~~~--~~~---~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~  303 (330)
T PRK11028        238 DGRHLYACDRTASLISVFS--------VSEDGSVLSFEG--HQP---TETQPRGFNIDHSGKYLIAAGQKSHHISVYEI  303 (330)
T ss_pred             CCCEEEEecCCCCeEEEEE--------EeCCCCeEEEeE--EEe---ccccCCceEECCCCCEEEEEEccCCcEEEEEE
Confidence            9998888754 67787743        333333221111  100   1112233678899999998765 445555554

>KOG0771|consensus

Probab=99.10  E-value=2.9e-10  Score=98.40  Aligned_cols=158  Identities=16%  Similarity=0.181  Sum_probs=105.7

Q ss_pred             EEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEEEeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEe
Q psy4650          82 NCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLT  161 (381)
Q Consensus        82 ~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~  161 (381)
                      .+++|+.+|.  .+++|+.||++|+|+..+...+.....|.+.|.++.|+|+|..|++-+.| ..+||++.+|..+....
T Consensus       148 k~vaf~~~gs--~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t  224 (398)
T KOG0771|consen  148 KVVAFNGDGS--KLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKT  224 (398)
T ss_pred             eEEEEcCCCC--EeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcC
Confidence            6888988777  79999999999999988887778888899999999999999999999999 89999999997666554


Q ss_pred             c--CCcceEEEEEcCCC---CE--EEEEeCCCeEEEEecCCCceEEEecCCCEEEEEecCceeecccccCCccccccCCc
Q psy4650         162 Y--GLERVWTISSLKGS---NN--VAIGYDEGSVLLKVGREEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAG  234 (381)
Q Consensus       162 ~--~~~~v~~v~~~~~~---~~--l~~~~~dg~v~i~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg  234 (381)
                      .  .......+.|..++   .+  ++....-+.++.+.     +..|+.. ....+..    ......+... ++-++||
T Consensus       225 ~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~-----~~~w~~~-~~l~~~~----~~~~~~siSs-l~VS~dG  293 (398)
T KOG0771|consen  225 PFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCD-----ISLWSGS-NFLRLRK----KIKRFKSISS-LAVSDDG  293 (398)
T ss_pred             CcccchhhhhceecccCCCceEEEEEecCCCCceeEEE-----eeeeccc-cccchhh----hhhccCccee-EEEcCCC
Confidence            2  22234455565554   22  22222233343311     1112221 1111110    1111112222 5668999


Q ss_pred             eEEeeehHHHHHhccCCCc
Q psy4650         235 VVLTLSVHVTIKYRLDISD  253 (381)
Q Consensus       235 ~~l~~~~~d~~~~~~d~~~  253 (381)
                      ++++++..++.+.+++...
T Consensus       294 kf~AlGT~dGsVai~~~~~  312 (398)
T KOG0771|consen  294 KFLALGTMDGSVAIYDAKS  312 (398)
T ss_pred             cEEEEeccCCcEEEEEece
Confidence            9999999999887776543

>KOG1523|consensus

Probab=99.09  E-value=2.2e-09  Score=90.02  Aligned_cols=150  Identities=13%  Similarity=0.149  Sum_probs=114.8

Q ss_pred             eeecCCCceEEEEEecCCeEEEecC-CCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEE-
Q psy4650          39 ITTNKDMIEYKISYQESSRVKAFNP-IQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQ-  116 (381)
Q Consensus        39 i~~~~~~~~~~~s~~~d~~v~i~~~-~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~-  116 (381)
                      |-..+. .+-+++++.|..-++|.. ....-...-.|..|+...+++.|+|.++  .|+.||.-+.|.||-++..+.=. 
T Consensus        61 vdWap~-snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~en--kFAVgSgar~isVcy~E~ENdWWV  137 (361)
T KOG1523|consen   61 VDWAPK-SNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKEN--KFAVGSGARLISVCYYEQENDWWV  137 (361)
T ss_pred             EeecCC-CCceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCc--eEEeccCccEEEEEEEecccceeh
Confidence            334443 557899999999999998 4333334445667899999999999776  79999999999999887554211 


Q ss_pred             ---EeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCC------------------CCeeeEEEecCCcceEEEEEcCC
Q psy4650         117 ---TLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSG------------------THRLEISLTYGLERVWTISSLKG  175 (381)
Q Consensus       117 ---~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~------------------~~~~~~~~~~~~~~v~~v~~~~~  175 (381)
                         .-+-+...|.+++|+|++-++++|+.|+..+|+..-                  -|++...+....+.+..+.|+|.
T Consensus       138 sKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~s  217 (361)
T KOG1523|consen  138 SKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPS  217 (361)
T ss_pred             hhhhCCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCC
Confidence               123456789999999999999999999999999532                  12233333345678999999999


Q ss_pred             CCEEEEEeCCCeEEEE
Q psy4650         176 SNNVAIGYDEGSVLLK  191 (381)
Q Consensus       176 ~~~l~~~~~dg~v~i~  191 (381)
                      |..|+-.+.|.++.+-
T Consensus       218 G~~lawv~Hds~v~~~  233 (361)
T KOG1523|consen  218 GNRLAWVGHDSTVSFV  233 (361)
T ss_pred             CCEeeEecCCCceEEe
Confidence            9999999999999883

>KOG1538|consensus

Probab=99.09  E-value=1.4e-10  Score=105.86  Aligned_cols=144  Identities=19%  Similarity=0.166  Sum_probs=104.9

Q ss_pred             cEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEEEeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEE
Q psy4650          80 GVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEIS  159 (381)
Q Consensus        80 ~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~  159 (381)
                      .|..++|-|||+.  ++.+. +..+.+||...|..+.++++|.+.|.|++|+.+|..++||+.|+.|.+|...-   ...
T Consensus        14 ci~d~afkPDGsq--L~lAA-g~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~kl---EG~   87 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQ--LILAA-GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKL---EGI   87 (1081)
T ss_pred             chheeEECCCCce--EEEec-CCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccc---cce
Confidence            7899999999984  33332 45788999999999999999999999999999999999999999999998642   223


Q ss_pred             Ee-cCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCceEEEecCCCEEEEEecCceeecccccCCccccccCCceEEe
Q psy4650         160 LT-YGLERVWTISSLKGSNNVAIGYDEGSVLLKVGREEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLT  238 (381)
Q Consensus       160 ~~-~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~  238 (381)
                      ++ .|.+.+.|+.|.|-...+++++-.. +-+|......+..+                  ........++|..||++++
T Consensus        88 LkYSH~D~IQCMsFNP~~h~LasCsLsd-FglWS~~qK~V~K~------------------kss~R~~~CsWtnDGqyla  148 (1081)
T KOG1538|consen   88 LKYSHNDAIQCMSFNPITHQLASCSLSD-FGLWSPEQKSVSKH------------------KSSSRIICCSWTNDGQYLA  148 (1081)
T ss_pred             eeeccCCeeeEeecCchHHHhhhcchhh-ccccChhhhhHHhh------------------hhheeEEEeeecCCCcEEE
Confidence            33 3888999999999999999887532 23322211111100                  0011111156778999999


Q ss_pred             eehHHHHHhc
Q psy4650         239 LSVHVTIKYR  248 (381)
Q Consensus       239 ~~~~d~~~~~  248 (381)
                      .+..++++.+
T Consensus       149 lG~~nGTIsi  158 (1081)
T KOG1538|consen  149 LGMFNGTISI  158 (1081)
T ss_pred             EeccCceEEe
Confidence            8888876654

>KOG0290|consensus

Probab=99.08  E-value=1.9e-09  Score=89.25  Aligned_cols=150  Identities=17%  Similarity=0.165  Sum_probs=111.7

Q ss_pred             hcceeeeecCCCceEEEEEecCCeEEEecCCCcccee-eEeeccccccEEEEEeeeCCCccEEEEEcCC-CeEEEEECCC
Q psy4650          34 ETKVDITTNKDMIEYKISYQESSRVKAFNPIQVATLI-LKTLYGHEKGVNCVDYYHGGDKPYLISGADD-RLVKIWDYQN  111 (381)
Q Consensus        34 ~~~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~-~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d-~~v~vwd~~~  111 (381)
                      ...|+|.+..++..++++++.||.+|+||++.....- +..-..-..+..-++|++..- +++|+-..| ..|.+.|++.
T Consensus       197 KEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDp-nymATf~~dS~~V~iLDiR~  275 (364)
T KOG0290|consen  197 KEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDP-NYMATFAMDSNKVVILDIRV  275 (364)
T ss_pred             cceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCc-hHHhhhhcCCceEEEEEecC
Confidence            3458999998888999999999999999997543322 222122246778888886433 478876655 4688889986


Q ss_pred             C-eEEEEeccCCCCEEEEEEecCCC-EEEEEeCCCCEEEEeCCCCe------eeEEEecCCcceEEEEEcC-CCCEEEEE
Q psy4650         112 K-TCVQTLEGHGQNISAVCFHPELP-IVITGSEDGSVRVWHSGTHR------LEISLTYGLERVWTISSLK-GSNNVAIG  182 (381)
Q Consensus       112 ~-~~~~~~~~~~~~v~~~~~~p~~~-~l~s~~~d~~i~vwd~~~~~------~~~~~~~~~~~v~~v~~~~-~~~~l~~~  182 (381)
                      . .++..+.+|.+.|.+++|.|... .+.++|.|..+.+||+..-.      ++..+. ..+.|..+.|++ .+.+++.+
T Consensus       276 P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~-a~~EVNqi~Ws~~~~Dwiai~  354 (364)
T KOG0290|consen  276 PCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYT-AGGEVNQIQWSSSQPDWIAIC  354 (364)
T ss_pred             CCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhh-ccceeeeeeecccCCCEEEEE
Confidence            5 57889999999999999999654 89999999999999997422      122222 457899999996 46678777


Q ss_pred             eCC
Q psy4650         183 YDE  185 (381)
Q Consensus       183 ~~d  185 (381)
                      ...
T Consensus       355 ~~k  357 (364)
T KOG0290|consen  355 FGK  357 (364)
T ss_pred             ecC
Confidence            643

>KOG1272|consensus

Probab=99.08  E-value=1.7e-10  Score=101.01  Aligned_cols=122  Identities=13%  Similarity=0.183  Sum_probs=106.4

Q ss_pred             ccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEEEeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeE
Q psy4650          79 KGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEI  158 (381)
Q Consensus        79 ~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~  158 (381)
                      ..|.-+.|-|..-  +|++++..|.++.-|+.+|+.+..+..-.+.+..+.-+|-...+-.|...|+|.+|......++.
T Consensus       210 ~~v~rLeFLPyHf--LL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLv  287 (545)
T KOG1272|consen  210 IRVARLEFLPYHF--LLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLV  287 (545)
T ss_pred             Cchhhhcccchhh--eeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHH
Confidence            4466667777554  78999999999999999999999888778888999999999999999999999999999999999


Q ss_pred             EEecCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCceEEEecCCCEEEEEe
Q psy4650         159 SLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKVGREEPAVSMDVNGCKIIWAR  212 (381)
Q Consensus       159 ~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~~~~~~~~~~d~~~~~~~~~~  212 (381)
                      .+..|.+.|.++++.++|.++++.+.|..++|          ||.+.-..+...
T Consensus       288 KiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kI----------WDlR~~~ql~t~  331 (545)
T KOG1272|consen  288 KILCHRGPVSSIAVDRGGRYMATTGLDRKVKI----------WDLRNFYQLHTY  331 (545)
T ss_pred             HHHhcCCCcceEEECCCCcEEeecccccceeE----------eeecccccccee
Confidence            99999999999999999999999999999999          666555544333

>KOG1272|consensus

Probab=99.08  E-value=2.9e-10  Score=99.54  Aligned_cols=140  Identities=11%  Similarity=0.049  Sum_probs=110.4

Q ss_pred             ceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEEEeccCCCCE
Q psy4650          46 IEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNI  125 (381)
Q Consensus        46 ~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v  125 (381)
                      .-.|++++..|-++--|...  ..++..+..-.+.+..+.-+|-..  .+-.|...|+|.+|.....+++..+.+|.++|
T Consensus       221 HfLL~~~~~~G~L~Y~DVS~--GklVa~~~t~~G~~~vm~qNP~Na--Vih~GhsnGtVSlWSP~skePLvKiLcH~g~V  296 (545)
T KOG1272|consen  221 HFLLVAASEAGFLKYQDVST--GKLVASIRTGAGRTDVMKQNPYNA--VIHLGHSNGTVSLWSPNSKEPLVKILCHRGPV  296 (545)
T ss_pred             hheeeecccCCceEEEeech--hhhhHHHHccCCccchhhcCCccc--eEEEcCCCceEEecCCCCcchHHHHHhcCCCc
Confidence            33567788888887777753  445556666678888888888554  78899999999999999999999999999999


Q ss_pred             EEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCCCeEEEEe
Q psy4650         126 SAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKV  192 (381)
Q Consensus       126 ~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~  192 (381)
                      .++++.++|.++++.|.|..++|||++.-..+.++.. ......++++..|. || ++.-..+.+|.
T Consensus       297 ~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~Sqkgl-LA-~~~G~~v~iw~  360 (545)
T KOG1272|consen  297 SSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKGL-LA-LSYGDHVQIWK  360 (545)
T ss_pred             ceEEECCCCcEEeecccccceeEeeeccccccceeec-CCCccccccccccc-ee-eecCCeeeeeh
Confidence            9999999999999999999999999998877776654 45566777776653 33 33445677764

>KOG1587|consensus

Probab=99.08  E-value=2.2e-09  Score=100.26  Aligned_cols=149  Identities=17%  Similarity=0.147  Sum_probs=112.3

Q ss_pred             eecCCCceEEEEEecCCeEEEecCCCcccee------eEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECC-CC
Q psy4650          40 TTNKDMIEYKISYQESSRVKAFNPIQVATLI------LKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQ-NK  112 (381)
Q Consensus        40 ~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~------~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~-~~  112 (381)
                      .+.+....-++.|...|.|.-=+-.......      +.....|.++|.++.++|-+.+ .+.+++ |.+|++|... ..
T Consensus       354 ~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k-~fls~g-DW~vriWs~~~~~  431 (555)
T KOG1587|consen  354 KFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPK-NFLSVG-DWTVRIWSEDVIA  431 (555)
T ss_pred             eeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccc-eeeeec-cceeEeccccCCC
Confidence            3444445567778888877662221111222      3355678899999999998775 444555 9999999988 66


Q ss_pred             eEEEEeccCCCCEEEEEEecCCC-EEEEEeCCCCEEEEeCCC--CeeeEEEecCCcceEEEEEcCCCCEEEEEeCCCeEE
Q psy4650         113 TCVQTLEGHGQNISAVCFHPELP-IVITGSEDGSVRVWHSGT--HRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVL  189 (381)
Q Consensus       113 ~~~~~~~~~~~~v~~~~~~p~~~-~l~s~~~d~~i~vwd~~~--~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~  189 (381)
                      .++..+..+...|++++|+|..+ .++++..||.+.+||+..  ..++.+..........+.|+++|+.+++|...|.++
T Consensus       432 ~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~  511 (555)
T KOG1587|consen  432 SPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTH  511 (555)
T ss_pred             CcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEE
Confidence            77888888888899999999887 677788899999999963  344555555556677888999999999999999999


Q ss_pred             E
Q psy4650         190 L  190 (381)
Q Consensus       190 i  190 (381)
                      +
T Consensus       512 ~  512 (555)
T KOG1587|consen  512 I  512 (555)
T ss_pred             E
Confidence            8

>KOG1963|consensus

Probab=99.06  E-value=6.1e-09  Score=98.13  Aligned_cols=152  Identities=15%  Similarity=0.242  Sum_probs=114.0

Q ss_pred             ceeeeecCCCceEEEEEecCCeEEEecCCCccce-eeE-eeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCC--
Q psy4650          36 KVDITTNKDMIEYKISYQESSRVKAFNPIQVATL-ILK-TLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQN--  111 (381)
Q Consensus        36 ~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~-~~~-~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~--  111 (381)
                      +..|...+. +++....-. ..+.+|........ ..+ .-..|+-.++|.++||.+.  ++++|..||.|.+|.--.  
T Consensus       163 ~~~I~~~~~-ge~~~i~~~-~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~--~~Aa~d~dGrI~vw~d~~~~  238 (792)
T KOG1963|consen  163 PKSIVDNNS-GEFKGIVHM-CKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNER--YLAAGDSDGRILVWRDFGSS  238 (792)
T ss_pred             CccEEEcCC-ceEEEEEEe-eeEEEEEecccceeeccchhhhhhcccceeEEeccccc--eEEEeccCCcEEEEeccccc
Confidence            555555554 444433333 35667766432211 111 1124777899999999776  899999999999996543  


Q ss_pred             C--eEEEEeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCCCeEE
Q psy4650         112 K--TCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVL  189 (381)
Q Consensus       112 ~--~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~  189 (381)
                      +  .....++-|.+.|.+++|+++|.+|++||..+.+.+|.+.++. ..-++.-.+.+..+.++|++...+....|+.+.
T Consensus       239 ~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~  317 (792)
T KOG1963|consen  239 DDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIH  317 (792)
T ss_pred             cccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCC-cccccccCCeeEEEEEcCCCCeEEEEecCceEE
Confidence            2  2345678899999999999999999999999999999999988 444566778999999999999999999999988


Q ss_pred             EEe
Q psy4650         190 LKV  192 (381)
Q Consensus       190 i~~  192 (381)
                      +-.
T Consensus       318 li~  320 (792)
T KOG1963|consen  318 LIK  320 (792)
T ss_pred             EEe
Confidence            843

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.05  E-value=3.2e-08  Score=89.20  Aligned_cols=205  Identities=9%  Similarity=0.037  Sum_probs=119.8

Q ss_pred             ceeeeecCCCceEEEEEecCCeEEEecCCCccc-eeeEeeccccccEEEEEeeeCCCccEEEEE-cCCCeEEEEECCC-C
Q psy4650          36 KVDITTNKDMIEYKISYQESSRVKAFNPIQVAT-LILKTLYGHEKGVNCVDYYHGGDKPYLISG-ADDRLVKIWDYQN-K  112 (381)
Q Consensus        36 ~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~-~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~-~~d~~v~vwd~~~-~  112 (381)
                      +.-+..++++..+.+++..++.|.+|+...... ....... ..+....+.++|++.  +++++ ..++.|.+|++.+ +
T Consensus        37 ~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~~~~g~--~l~v~~~~~~~v~v~~~~~~g  113 (330)
T PRK11028         37 VQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHISTDHQGR--FLFSASYNANCVSVSPLDKDG  113 (330)
T ss_pred             CccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEEECCCCC--EEEEEEcCCCeEEEEEECCCC
Confidence            444566666443344555688999998853211 1222221 234567899999887  55554 4589999999864 2


Q ss_pred             ---eEEEEeccCCCCEEEEEEecCCCEEEE-EeCCCCEEEEeCCCCeeeE-------EEecCCcceEEEEEcCCCCEEEE
Q psy4650         113 ---TCVQTLEGHGQNISAVCFHPELPIVIT-GSEDGSVRVWHSGTHRLEI-------SLTYGLERVWTISSLKGSNNVAI  181 (381)
Q Consensus       113 ---~~~~~~~~~~~~v~~~~~~p~~~~l~s-~~~d~~i~vwd~~~~~~~~-------~~~~~~~~v~~v~~~~~~~~l~~  181 (381)
                         ..+..+.+ ....++++++|++++++. ...++.|.+||+.+...+.       ... .......+.|+|+|+++++
T Consensus       114 ~~~~~~~~~~~-~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~-~g~~p~~~~~~pdg~~lyv  191 (330)
T PRK11028        114 IPVAPIQIIEG-LEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTV-EGAGPRHMVFHPNQQYAYC  191 (330)
T ss_pred             CCCCceeeccC-CCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecC-CCCCCceEEECCCCCEEEE
Confidence               22333332 234678899999997754 4557999999997632221       111 2244678999999999887


Q ss_pred             EeC-CCeEEEEecCCCceEEEecCCCEE--EEEecCceeecccccCCccccccCCceEEeeehH-HHHHhccCCCc
Q psy4650         182 GYD-EGSVLLKVGREEPAVSMDVNGCKI--IWARHSEVQQANLKTMPEVFENITAGVVLTLSVH-VTIKYRLDISD  253 (381)
Q Consensus       182 ~~~-dg~v~i~~~~~~~~~~~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~-d~~~~~~d~~~  253 (381)
                      +.. ++.+.+|.        ++..++..  +...........-......+.++|||++++++.. .+....|++..
T Consensus       192 ~~~~~~~v~v~~--------~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~  259 (330)
T PRK11028        192 VNELNSSVDVWQ--------LKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSE  259 (330)
T ss_pred             EecCCCEEEEEE--------EeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeC
Confidence            765 88998844        22212221  1111110000000111112567899999888754 44556666543

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.04  E-value=4.1e-08  Score=91.80  Aligned_cols=164  Identities=13%  Similarity=0.034  Sum_probs=108.4

Q ss_pred             eEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEc---CCCeEEEEECCCCeEEEEeccCCCCEEEEEEecC
Q psy4650          57 RVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGA---DDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPE  133 (381)
Q Consensus        57 ~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~---~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~p~  133 (381)
                      .+.++|...   ...+.+..|.+.+.+..|+|+|.  .|+..+   .+..|.+||+.++... .+..+.+.+.+.+|+|+
T Consensus       183 ~l~~~d~dg---~~~~~lt~~~~~v~~p~wSpDG~--~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPD  256 (435)
T PRK05137        183 RLAIMDQDG---ANVRYLTDGSSLVLTPRFSPNRQ--EITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPD  256 (435)
T ss_pred             EEEEECCCC---CCcEEEecCCCCeEeeEECCCCC--EEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCC
Confidence            777888742   33455667888999999999987  465544   3578999999888653 34445667788999999


Q ss_pred             CCEEE-EEeCCCC--EEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeC-CCeEEEEecCCCceEEEecCCCEEE
Q psy4650         134 LPIVI-TGSEDGS--VRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYD-EGSVLLKVGREEPAVSMDVNGCKII  209 (381)
Q Consensus       134 ~~~l~-s~~~d~~--i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~-dg~v~i~~~~~~~~~~~d~~~~~~~  209 (381)
                      |+.++ +.+.++.  |.+||+.++... .+..+........|+|+|+.++..+. +|...+        ..+|..++...
T Consensus       257 G~~la~~~~~~g~~~Iy~~d~~~~~~~-~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~I--------y~~d~~g~~~~  327 (435)
T PRK05137        257 GRKVVMSLSQGGNTDIYTMDLRSGTTT-RLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQL--------YVMNADGSNPR  327 (435)
T ss_pred             CCEEEEEEecCCCceEEEEECCCCceE-EccCCCCccCceeEcCCCCEEEEEECCCCCCeE--------EEEECCCCCeE
Confidence            99765 5555555  777798887653 35445555677899999998887764 333233        23676655432


Q ss_pred             EEecCceeecccccCCccccccCCceEEeeehH
Q psy4650         210 WARHSEVQQANLKTMPEVFENITAGVVLTLSVH  242 (381)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~  242 (381)
                      .-...       .+......|+|||..+++...
T Consensus       328 ~lt~~-------~~~~~~~~~SpdG~~ia~~~~  353 (435)
T PRK05137        328 RISFG-------GGRYSTPVWSPRGDLIAFTKQ  353 (435)
T ss_pred             EeecC-------CCcccCeEECCCCCEEEEEEc
Confidence            11111       010111467899999987654

>KOG1517|consensus

Probab=99.03  E-value=3.3e-09  Score=101.86  Aligned_cols=197  Identities=10%  Similarity=0.064  Sum_probs=129.5

Q ss_pred             ecCCCceEEEEEecCCeEEEecCCCccceeeEeec-cccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCe---EEE
Q psy4650          41 TNKDMIEYKISYQESSRVKAFNPIQVATLILKTLY-GHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKT---CVQ  116 (381)
Q Consensus        41 ~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~-~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~---~~~  116 (381)
                      +.+..+ +|+++++-..|+|||...  ..+.+.+. +-...|+++.-+-.+ .+.++.|-.||.|++||.+...   .+.
T Consensus      1173 WqQ~~G-~Ll~tGd~r~IRIWDa~~--E~~~~diP~~s~t~vTaLS~~~~~-gn~i~AGfaDGsvRvyD~R~a~~ds~v~ 1248 (1387)
T KOG1517|consen 1173 WQQQSG-HLLVTGDVRSIRIWDAHK--EQVVADIPYGSSTLVTALSADLVH-GNIIAAGFADGSVRVYDRRMAPPDSLVC 1248 (1387)
T ss_pred             hhhhCC-eEEecCCeeEEEEEeccc--ceeEeecccCCCccceeecccccC-CceEEEeecCCceEEeecccCCccccce
Confidence            344433 566666688999999863  44445443 344557777554433 2489999999999999987653   467


Q ss_pred             EeccCCCC--EEEEEEecCCC-EEEEEeCCCCEEEEeCCCCeee--EEEecCC--c-ceEEEEEcCCCCEEEEEeCCCeE
Q psy4650         117 TLEGHGQN--ISAVCFHPELP-IVITGSEDGSVRVWHSGTHRLE--ISLTYGL--E-RVWTISSLKGSNNVAIGYDEGSV  188 (381)
Q Consensus       117 ~~~~~~~~--v~~~~~~p~~~-~l~s~~~d~~i~vwd~~~~~~~--~~~~~~~--~-~v~~v~~~~~~~~l~~~~~dg~v  188 (381)
                      ..+.|...  |..+.+.+.|- .+++|+.||.|++||++.....  .++..|.  + ..+++..|+....+|+|+. +.+
T Consensus      1249 ~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~i 1327 (1387)
T KOG1517|consen 1249 VYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLI 1327 (1387)
T ss_pred             eecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceE
Confidence            78889877  99999999776 5999999999999999974221  2222222  2 5899999999999999998 999


Q ss_pred             EEEecCCCceEEEecCCCEEEEEecCceeecccccCCccccccCCceEEeeehHHHHHhccCCC
Q psy4650         189 LLKVGREEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSVHVTIKYRLDIS  252 (381)
Q Consensus       189 ~i~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~d~~~~~~d~~  252 (381)
                      .||+...+.+-.+-...+.          ...-.+....++|.|-...++.++.|..+.++...
T Consensus      1328 kIy~~~G~~l~~~k~n~~F----------~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~ 1381 (1387)
T KOG1517|consen 1328 KIYSLSGEQLNIIKYNPGF----------MGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCE 1381 (1387)
T ss_pred             EEEecChhhhcccccCccc----------ccCcCCCcceeeecchhHhhhhccCCceEEEeecC
Confidence            9955443332222211111          11111111225666777777777776666555443

>KOG2321|consensus

Probab=99.03  E-value=6.6e-09  Score=93.59  Aligned_cols=178  Identities=17%  Similarity=0.171  Sum_probs=128.6

Q ss_pred             EEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEEEec------cCCC
Q psy4650          50 ISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE------GHGQ  123 (381)
Q Consensus        50 ~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~------~~~~  123 (381)
                      +.++....|+-+++++  +..+..+.-..+.++++..++...  +|++|+.+|.|-.||.+.......+.      .|.+
T Consensus       149 y~~gsg~evYRlNLEq--GrfL~P~~~~~~~lN~v~in~~hg--Lla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg  224 (703)
T KOG2321|consen  149 YLVGSGSEVYRLNLEQ--GRFLNPFETDSGELNVVSINEEHG--LLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPG  224 (703)
T ss_pred             EEeecCcceEEEEccc--cccccccccccccceeeeecCccc--eEEecccCceEEEecchhhhhheeeecccccCCCcc
Confidence            3344445788888874  667778887789999999998665  88999999999999998876544442      2333


Q ss_pred             -----CEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEe-cCCcceEEEEEcCCCC-EEEEEeCCCeEEEEecCCC
Q psy4650         124 -----NISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLT-YGLERVWTISSLKGSN-NVAIGYDEGSVLLKVGREE  196 (381)
Q Consensus       124 -----~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~-~~~~~v~~v~~~~~~~-~l~~~~~dg~v~i~~~~~~  196 (381)
                           .|+++.|+.+|-.++.|..+|.+.|||+++.+++..-. +...++..+.|.+.+. -.+...+...++|      
T Consensus       225 ~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~Dk~~~ki------  298 (703)
T KOG2321|consen  225 GDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSMDKRILKI------  298 (703)
T ss_pred             ccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEecchHHhhh------
Confidence                 49999999999999999999999999999988876654 2456788888877632 2333344566777      


Q ss_pred             ceEEEecCCCEEEEEecCceeecccccCCccccccCCceEEeeehHHHHHhc
Q psy4650         197 PAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSVHVTIKYR  248 (381)
Q Consensus       197 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~d~~~~~  248 (381)
                          ||..+|++...+....      .+.. +++.|++-.+.++-.......
T Consensus       299 ----Wd~~~Gk~~asiEpt~------~lND-~C~~p~sGm~f~Ane~~~m~~  339 (703)
T KOG2321|consen  299 ----WDECTGKPMASIEPTS------DLND-FCFVPGSGMFFTANESSKMHT  339 (703)
T ss_pred             ----cccccCCceeeccccC------CcCc-eeeecCCceEEEecCCCccee
Confidence                8888888776654332      1222 566788777777776655443

>PRK01433 hscA chaperone protein HscA; Provisional

Probab=99.03  E-value=4.5e-11  Score=114.34  Aligned_cols=79  Identities=11%  Similarity=0.024  Sum_probs=68.5

Q ss_pred             HHhhhhhhccccceeeEEEecccCCcccccccChHHHHHHHHHHhhhhhhhhHhhhccccceeeEeeccccCcceEEeec
Q psy4650         264 AAETCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIGGLLTSFVQPCMHVLSTLQSSNVFVESLYDGLDFHHNVS  343 (381)
Q Consensus       264 ~~e~ak~~lS~~~~~~i~~~~l~~g~~~~~~itr~~fe~l~~~l~~~~~~~~~~~Ls~~~~~~~~~~~~~~~~~~~~~~~  343 (381)
                      .||++|+.||.......          ...++||++||+++.+++.++.++++++|..+.     .++++.++++||+++
T Consensus       256 ~~ekaK~~LS~~~~~~~----------~~~~itr~efe~l~~~l~~~~~~~i~~~L~~a~-----~~~Id~ViLvGGssr  320 (595)
T PRK01433        256 LAKKAKETLTYKDSFNN----------DNISINKQTLEQLILPLVERTINIAQECLEQAG-----NPNIDGVILVGGATR  320 (595)
T ss_pred             HHHHHHHhcCCCccccc----------ceEEEcHHHHHHHHHHHHHHHHHHHHHHHhhcC-----cccCcEEEEECCccc
Confidence            48999999998664221          267899999999999999999999999999864     456888899999999


Q ss_pred             HHHHHHHHHHHHHH
Q psy4650         344 RARFESLIGGLLTS  357 (381)
Q Consensus       344 ~~~~e~~~~~~~~~  357 (381)
                      +|.++++++++|++
T Consensus       321 iP~v~~~l~~~f~~  334 (595)
T PRK01433        321 IPLIKDELYKAFKV  334 (595)
T ss_pred             ChhHHHHHHHHhCC
Confidence            99999999999974

>KOG1517|consensus

Probab=99.02  E-value=3.2e-09  Score=101.89  Aligned_cols=151  Identities=14%  Similarity=0.190  Sum_probs=116.7

Q ss_pred             eeeecCCCceEEEEEecCCeEEEecCCCccc-eeeEeecccccc--EEEEEeeeCCCccEEEEEcCCCeEEEEECCCCe-
Q psy4650          38 DITTNKDMIEYKISYQESSRVKAFNPIQVAT-LILKTLYGHEKG--VNCVDYYHGGDKPYLISGADDRLVKIWDYQNKT-  113 (381)
Q Consensus        38 ~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~-~~~~~l~~h~~~--v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~-  113 (381)
                      .+......++++++|-.||.+++||.+-... ..+...+.|++.  |..+.+.+.|-. .|++|+.||.|++||++... 
T Consensus      1213 aLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~-elvSgs~~G~I~~~DlR~~~~ 1291 (1387)
T KOG1517|consen 1213 ALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLG-ELVSGSQDGDIQLLDLRMSSK 1291 (1387)
T ss_pred             eecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCc-ceeeeccCCeEEEEecccCcc
Confidence            4444555578999999999999999864332 245667889887  999999987775 79999999999999998742 


Q ss_pred             -EEEEeccCC--C-CEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEec-------CCcceEEEEEcCCCCEEEEE
Q psy4650         114 -CVQTLEGHG--Q-NISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTY-------GLERVWTISSLKGSNNVAIG  182 (381)
Q Consensus       114 -~~~~~~~~~--~-~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~-------~~~~v~~v~~~~~~~~l~~~  182 (381)
                       ....+..|.  + ..+++..|+..+.+|+|+. +.|+||++.+.+ +..++.       ....+.|++|||.--.+|+|
T Consensus      1292 e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~-l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG 1369 (1387)
T KOG1517|consen 1292 ETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQ-LNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAG 1369 (1387)
T ss_pred             cccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChhh-hcccccCcccccCcCCCcceeeecchhHhhhhc
Confidence             122233333  3 4899999999999999998 999999986443 333321       23467999999999999999


Q ss_pred             eCCCeEEEE
Q psy4650         183 YDEGSVLLK  191 (381)
Q Consensus       183 ~~dg~v~i~  191 (381)
                      +.|..|.++
T Consensus      1370 ~~Ds~V~iY 1378 (1387)
T KOG1517|consen 1370 SADSTVSIY 1378 (1387)
T ss_pred             cCCceEEEe
Confidence            999999983

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.00  E-value=5.1e-08  Score=90.75  Aligned_cols=186  Identities=10%  Similarity=0.024  Sum_probs=114.1

Q ss_pred             eeeeecCCCceEEEEEe--cCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEE-EEcCCC--eEEEEECCC
Q psy4650          37 VDITTNKDMIEYKISYQ--ESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLI-SGADDR--LVKIWDYQN  111 (381)
Q Consensus        37 ~~i~~~~~~~~~~~s~~--~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~-s~~~d~--~v~vwd~~~  111 (381)
                      ....+++++..+.+...  .+..+.+|++.......+..+.+|   +.++.|+|+|.  .|+ +.+.++  .|.+||+.+
T Consensus       202 ~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~---~~~~~~SPDG~--~La~~~~~~g~~~I~~~d~~t  276 (429)
T PRK03629        202 MSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRH---NGAPAFSPDGS--KLAFALSKTGSLNLYVMDLAS  276 (429)
T ss_pred             eeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCC---cCCeEECCCCC--EEEEEEcCCCCcEEEEEECCC
Confidence            35566777655544432  234788888865443444444444   44689999988  444 434444  588899988


Q ss_pred             CeEEEEeccCCCCEEEEEEecCCCEEEEEeC-CCC--EEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCC-Ce
Q psy4650         112 KTCVQTLEGHGQNISAVCFHPELPIVITGSE-DGS--VRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDE-GS  187 (381)
Q Consensus       112 ~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~-d~~--i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d-g~  187 (381)
                      +....... +...+....|+|+|+.++..+. ++.  |.++|+.++... .+...........|+|+|+.++..+.+ +.
T Consensus       277 g~~~~lt~-~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~  354 (429)
T PRK03629        277 GQIRQVTD-GRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RITWEGSQNQDADVSSDGKFMVMVSSNGGQ  354 (429)
T ss_pred             CCEEEccC-CCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-EeecCCCCccCEEECCCCCEEEEEEccCCC
Confidence            87554433 4456788999999998876665 344  444567666543 333333455678999999998876643 32


Q ss_pred             EEEEecCCCceEEEecCCCEEEEEecCceeecccccCCccccccCCceEEeeehHHHH
Q psy4650         188 VLLKVGREEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSVHVTI  245 (381)
Q Consensus       188 v~i~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~d~~  245 (381)
                      ..+        ..||..++.... +...       .......|+|||+.+++.+.++.
T Consensus       355 ~~I--------~~~dl~~g~~~~-Lt~~-------~~~~~p~~SpDG~~i~~~s~~~~  396 (429)
T PRK03629        355 QHI--------AKQDLATGGVQV-LTDT-------FLDETPSIAPNGTMVIYSSSQGM  396 (429)
T ss_pred             ceE--------EEEECCCCCeEE-eCCC-------CCCCCceECCCCCEEEEEEcCCC
Confidence            222        337776664321 1111       01112468899999998887654

>KOG0322|consensus

Probab=98.98  E-value=1.8e-09  Score=88.11  Aligned_cols=159  Identities=13%  Similarity=0.097  Sum_probs=115.9

Q ss_pred             ccccEEEEEeee-CCCccEEEEEcCCCeEEEEECCCC----------eEEEEeccCCCCEEEEEEecCCCEEEEEeCCCC
Q psy4650          77 HEKGVNCVDYYH-GGDKPYLISGADDRLVKIWDYQNK----------TCVQTLEGHGQNISAVCFHPELPIVITGSEDGS  145 (381)
Q Consensus        77 h~~~v~~~~~~~-~~~~~~l~s~~~d~~v~vwd~~~~----------~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~  145 (381)
                      ..+.+.|..+.. ++...+++.|-.+|.|.+||+.++          +.......|.++|.++.|.+.-..=++|+.+..
T Consensus       149 Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dk  228 (323)
T KOG0322|consen  149 KLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDK  228 (323)
T ss_pred             ccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCcccc
Confidence            345677776533 334446678889999999999987          333445679999999999886656677888888


Q ss_pred             EEEEeCCCC--ee--eEEEecCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCceEEEecCCCEEEEEecCceeeccc
Q psy4650         146 VRVWHSGTH--RL--EISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKVGREEPAVSMDVNGCKIIWARHSEVQQANL  221 (381)
Q Consensus       146 i~vwd~~~~--~~--~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  221 (381)
                      +..|.+...  .+  ........-.|..+...|+++.+|+++.||.+++          |..++..++..+..+.     
T Consensus       229 l~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRV----------yswrtl~pLAVLkyHs-----  293 (323)
T KOG0322|consen  229 LVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRV----------YSWRTLNPLAVLKYHS-----  293 (323)
T ss_pred             ceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEE----------EEeccCCchhhhhhhh-----
Confidence            999987633  22  2223334556888999999999999999999999          6666666665544432     


Q ss_pred             ccCCccccccCCceEEeeehHHHHHhccCC
Q psy4650         222 KTMPEVFENITAGVVLTLSVHVTIKYRLDI  251 (381)
Q Consensus       222 ~~~~~~~~~~~dg~~l~~~~~d~~~~~~d~  251 (381)
                      .+... ++|+||...++.++.|.++..|++
T Consensus       294 agvn~-vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  294 AGVNA-VAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             cceeE-EEeCCCCchhhhccCCceEEeeec
Confidence            12222 678899999999999998888875

>PRK05137 tolB translocation protein TolB; Provisional

Probab=98.96  E-value=1.2e-07  Score=88.63  Aligned_cols=185  Identities=12%  Similarity=0.047  Sum_probs=116.3

Q ss_pred             eeeeecCCCceEEEEEe--cCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCe--EEEEECCCC
Q psy4650          37 VDITTNKDMIEYKISYQ--ESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRL--VKIWDYQNK  112 (381)
Q Consensus        37 ~~i~~~~~~~~~~~s~~--~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~--v~vwd~~~~  112 (381)
                      ....+.+++..+.+...  .+..+.+|++.....   ..+..+.+.+.+..|+|+|.. ++++.+.++.  |.+||+.++
T Consensus       205 ~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~---~~l~~~~g~~~~~~~SPDG~~-la~~~~~~g~~~Iy~~d~~~~  280 (435)
T PRK05137        205 LTPRFSPNRQEITYMSYANGRPRVYLLDLETGQR---ELVGNFPGMTFAPRFSPDGRK-VVMSLSQGGNTDIYTMDLRSG  280 (435)
T ss_pred             EeeEECCCCCEEEEEEecCCCCEEEEEECCCCcE---EEeecCCCcccCcEECCCCCE-EEEEEecCCCceEEEEECCCC
Confidence            44556677654444432  346899999864332   344556677888999999873 4456666655  777788877


Q ss_pred             eEEEEeccCCCCEEEEEEecCCCEEEEEeC-C--CCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCC-CeE
Q psy4650         113 TCVQTLEGHGQNISAVCFHPELPIVITGSE-D--GSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDE-GSV  188 (381)
Q Consensus       113 ~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~-d--~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d-g~v  188 (381)
                      ... .+..+.+......|+|+|+.++..+. +  ..|.+||+.++... .+..+...+....|+|+|+.++..+.+ +..
T Consensus       281 ~~~-~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~-~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~  358 (435)
T PRK05137        281 TTT-RLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR-RISFGGGRYSTPVWSPRGDLIAFTKQGGGQF  358 (435)
T ss_pred             ceE-EccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE-EeecCCCcccCeEECCCCCEEEEEEcCCCce
Confidence            653 45445556678999999998876653 3  36888898776543 333334556678899999998887643 223


Q ss_pred             EEEecCCCceEEEecCCCEEEEEecCceeecccccCCccccccCCceEEeeehHH
Q psy4650         189 LLKVGREEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSVHV  243 (381)
Q Consensus       189 ~i~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~d  243 (381)
                      .+        ..||..++.... +...       .......|+|||+.+++....
T Consensus       359 ~i--------~~~d~~~~~~~~-lt~~-------~~~~~p~~spDG~~i~~~~~~  397 (435)
T PRK05137        359 SI--------GVMKPDGSGERI-LTSG-------FLVEGPTWAPNGRVIMFFRQT  397 (435)
T ss_pred             EE--------EEEECCCCceEe-ccCC-------CCCCCCeECCCCCEEEEEEcc
Confidence            33        236765443211 1111       011225789999998876653

>PRK02889 tolB translocation protein TolB; Provisional

Probab=98.96  E-value=2.7e-08  Score=92.62  Aligned_cols=176  Identities=12%  Similarity=0.036  Sum_probs=108.6

Q ss_pred             CeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcC---CCeEEEEECCCCeEEEEeccCCCCEEEEEEec
Q psy4650          56 SRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGAD---DRLVKIWDYQNKTCVQTLEGHGQNISAVCFHP  132 (381)
Q Consensus        56 ~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~---d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~p  132 (381)
                      ..+.++|...   ...+.+..+.+.+.+.+|+|++.  .|+..+.   ...|.+||+.+++... +....+.+.+.+|+|
T Consensus       176 ~~L~~~D~dG---~~~~~l~~~~~~v~~p~wSPDG~--~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SP  249 (427)
T PRK02889        176 YQLQISDADG---QNAQSALSSPEPIISPAWSPDGT--KLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSP  249 (427)
T ss_pred             cEEEEECCCC---CCceEeccCCCCcccceEcCCCC--EEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECC
Confidence            4566777632   22344557788899999999987  5655443   3469999999886543 333334567899999


Q ss_pred             CCCEEE-EEeCCCCEEEEe--CCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeC-CCeEEEEecCCCceEEEecCCCEE
Q psy4650         133 ELPIVI-TGSEDGSVRVWH--SGTHRLEISLTYGLERVWTISSLKGSNNVAIGYD-EGSVLLKVGREEPAVSMDVNGCKI  208 (381)
Q Consensus       133 ~~~~l~-s~~~d~~i~vwd--~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~-dg~v~i~~~~~~~~~~~d~~~~~~  208 (381)
                      +|+.++ +.+.++...+|.  +.++. ...+..+........|+|+|+.++..+. +|...+|.        ++..++..
T Consensus       250 DG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~--------~~~~~g~~  320 (427)
T PRK02889        250 DGRTLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYR--------MPASGGAA  320 (427)
T ss_pred             CCCEEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEE--------EECCCCce
Confidence            999776 556777766665  44444 3444444445667889999998887664 35555533        45444432


Q ss_pred             EEEecCceeecccccCCccccccCCceEEeeehHHH---HHhccCCCc
Q psy4650         209 IWARHSEVQQANLKTMPEVFENITAGVVLTLSVHVT---IKYRLDISD  253 (381)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~d~---~~~~~d~~~  253 (381)
                      .--. ..      ........|+|||+.+++.....   ..+.|++..
T Consensus       321 ~~lt-~~------g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~  361 (427)
T PRK02889        321 QRVT-FT------GSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLAT  361 (427)
T ss_pred             EEEe-cC------CCCcCceEECCCCCEEEEEEccCCcEEEEEEECCC
Confidence            1111 00      00011136789999998776543   345566644

>KOG4547|consensus

Probab=98.96  E-value=5.2e-08  Score=88.25  Aligned_cols=131  Identities=18%  Similarity=0.105  Sum_probs=111.2

Q ss_pred             ceEEEEEecCCeEEEecCCCccceeeEee--ccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEEEeccCCC
Q psy4650          46 IEYKISYQESSRVKAFNPIQVATLILKTL--YGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQ  123 (381)
Q Consensus        46 ~~~~~s~~~d~~v~i~~~~~~~~~~~~~l--~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~  123 (381)
                      ...++-|-..|.|.+|+...  ..+-..+  .+|.+.|.++.++.+..  .|.|++.|+.+..|+......++.+++...
T Consensus        70 t~~lvlgt~~g~v~~ys~~~--g~it~~~st~~h~~~v~~~~~~~~~~--ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~  145 (541)
T KOG4547|consen   70 TSMLVLGTPQGSVLLYSVAG--GEITAKLSTDKHYGNVNEILDAQRLG--CIYSVGADLKVVYILEKEKVIIRIWKEQKP  145 (541)
T ss_pred             ceEEEeecCCccEEEEEecC--CeEEEEEecCCCCCcceeeecccccC--ceEecCCceeEEEEecccceeeeeeccCCC
Confidence            45777788888999999864  3333444  47999999999876544  689999999999999999999999999999


Q ss_pred             CEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEecCCcceEEEEEcCC-----CCEEEEE
Q psy4650         124 NISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKG-----SNNVAIG  182 (381)
Q Consensus       124 ~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~-----~~~l~~~  182 (381)
                      .+.+++++|||..+++++  +.|++||..+++.+..+.+|.+.|+++.|...     |.++.++
T Consensus       146 ~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLss  207 (541)
T KOG4547|consen  146 LVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSS  207 (541)
T ss_pred             ccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeec
Confidence            999999999999998886  68999999999999999999999999999876     5555544

>KOG1240|consensus

Probab=98.96  E-value=3.2e-08  Score=96.65  Aligned_cols=163  Identities=16%  Similarity=0.146  Sum_probs=114.3

Q ss_pred             eeeecCCCceEEEEEecCCeEEEecCCCccce-----eeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCC
Q psy4650          38 DITTNKDMIEYKISYQESSRVKAFNPIQVATL-----ILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNK  112 (381)
Q Consensus        38 ~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~-----~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~  112 (381)
                      ++...++.+.++++|+.||+|++|+..+....     ...++.-....+.++...+.++  .+|.++.||.|++.++...
T Consensus      1053 k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~--~~Av~t~DG~v~~~~id~~ 1130 (1431)
T KOG1240|consen 1053 KLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGD--QFAVSTKDGSVRVLRIDHY 1130 (1431)
T ss_pred             ceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCC--eEEEEcCCCeEEEEEcccc
Confidence            55556665679999999999999998543222     2223333456788888888777  7999999999999998762


Q ss_pred             e-------EEEEeccCC--CCEEEEEEec-CCC-EEEEEeCCCCEEEEeCCCCeeeEEEe--cCCcceEEEEEcCCCCEE
Q psy4650         113 T-------CVQTLEGHG--QNISAVCFHP-ELP-IVITGSEDGSVRVWHSGTHRLEISLT--YGLERVWTISSLKGSNNV  179 (381)
Q Consensus       113 ~-------~~~~~~~~~--~~v~~~~~~p-~~~-~l~s~~~d~~i~vwd~~~~~~~~~~~--~~~~~v~~v~~~~~~~~l  179 (381)
                      .       +.+....+.  ..|...+|.- .+. .++.+..-+.|..||.+.....++++  ...+.|++++.+|.+.++
T Consensus      1131 ~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~Wl 1210 (1431)
T KOG1240|consen 1131 NVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWL 1210 (1431)
T ss_pred             ccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecCCceEE
Confidence            1       112222222  2344444433 333 67788888899999999876665554  356789999999999999


Q ss_pred             EEEeCCCeEEEEecC-CCceEEEe
Q psy4650         180 AIGYDEGSVLLKVGR-EEPAVSMD  202 (381)
Q Consensus       180 ~~~~~dg~v~i~~~~-~~~~~~~d  202 (381)
                      +.|...|.+.+|+-+ ..++.+|.
T Consensus      1211 viGts~G~l~lWDLRF~~~i~sw~ 1234 (1431)
T KOG1240|consen 1211 VIGTSRGQLVLWDLRFRVPILSWE 1234 (1431)
T ss_pred             EEecCCceEEEEEeecCceeeccc
Confidence            999999999997644 23444444

>PRK04922 tolB translocation protein TolB; Provisional

Probab=98.96  E-value=4.2e-08  Score=91.64  Aligned_cols=176  Identities=13%  Similarity=0.048  Sum_probs=111.5

Q ss_pred             CeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcC---CCeEEEEECCCCeEEEEeccCCCCEEEEEEec
Q psy4650          56 SRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGAD---DRLVKIWDYQNKTCVQTLEGHGQNISAVCFHP  132 (381)
Q Consensus        56 ~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~---d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~p  132 (381)
                      ..+.+||...   ...+.+..|...+.+..|+|++.  .|+..+.   +..|.+||+.++.... +..+.+...+.+|+|
T Consensus       184 ~~l~i~D~~g---~~~~~lt~~~~~v~~p~wSpDg~--~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~Sp  257 (433)
T PRK04922        184 YALQVADSDG---YNPQTILRSAEPILSPAWSPDGK--KLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSP  257 (433)
T ss_pred             EEEEEECCCC---CCceEeecCCCccccccCCCCCC--EEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECC
Confidence            3688888743   23345667778899999999988  5666553   3479999998876433 333344556889999


Q ss_pred             CCCEEE-EEeCCC--CEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeC-CCeEEEEecCCCceEEEecCCCEE
Q psy4650         133 ELPIVI-TGSEDG--SVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYD-EGSVLLKVGREEPAVSMDVNGCKI  208 (381)
Q Consensus       133 ~~~~l~-s~~~d~--~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~-dg~v~i~~~~~~~~~~~d~~~~~~  208 (381)
                      +|+.++ +.+.++  .|.+||+.++... .+..+........|+|+|+.++.++. +|...+        +.++..++..
T Consensus       258 DG~~l~~~~s~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~i--------y~~dl~~g~~  328 (433)
T PRK04922        258 DGRRLALTLSRDGNPEIYVMDLGSRQLT-RLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQI--------YRVAASGGSA  328 (433)
T ss_pred             CCCEEEEEEeCCCCceEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceE--------EEEECCCCCe
Confidence            999665 445555  5999999888753 34444445567899999998887764 344333        2266655442


Q ss_pred             EEEecCceeecccccCCccccccCCceEEeeehHHH---HHhccCCCc
Q psy4650         209 IWARHSEVQQANLKTMPEVFENITAGVVLTLSVHVT---IKYRLDISD  253 (381)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~d~---~~~~~d~~~  253 (381)
                      ..-....       .......|+|||..+++...+.   ..+.|++..
T Consensus       329 ~~lt~~g-------~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~  369 (433)
T PRK04922        329 ERLTFQG-------NYNARASVSPDGKKIAMVHGSGGQYRIAVMDLST  369 (433)
T ss_pred             EEeecCC-------CCccCEEECCCCCEEEEEECCCCceeEEEEECCC
Confidence            2111100       0111146889999988765432   244566543

>PRK02889 tolB translocation protein TolB; Provisional

Probab=98.93  E-value=8e-08  Score=89.52  Aligned_cols=184  Identities=10%  Similarity=0.042  Sum_probs=110.9

Q ss_pred             eeeeecCCCceEEEEEecC--CeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEE--CCCC
Q psy4650          37 VDITTNKDMIEYKISYQES--SRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWD--YQNK  112 (381)
Q Consensus        37 ~~i~~~~~~~~~~~s~~~d--~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd--~~~~  112 (381)
                      ......+++..+.++...+  ..+.+||+.......+   ....+.+.+..|+|+|.. .+++.+.++...+|.  ..++
T Consensus       199 ~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l---~~~~g~~~~~~~SPDG~~-la~~~~~~g~~~Iy~~d~~~~  274 (427)
T PRK02889        199 ISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVV---ANFKGSNSAPAWSPDGRT-LAVALSRDGNSQIYTVNADGS  274 (427)
T ss_pred             ccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEe---ecCCCCccceEECCCCCE-EEEEEccCCCceEEEEECCCC
Confidence            3455667765555444333  3589999865433333   333445668999999873 334667788766665  4444


Q ss_pred             eEEEEeccCCCCEEEEEEecCCCEEEEEeC-CCCEEEEeC--CCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCCC---
Q psy4650         113 TCVQTLEGHGQNISAVCFHPELPIVITGSE-DGSVRVWHS--GTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEG---  186 (381)
Q Consensus       113 ~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~-d~~i~vwd~--~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg---  186 (381)
                      . ...+..+.+......|+|+|+.++..+. ++...+|.+  .++.... +...........|+|+|++++..+.++   
T Consensus       275 ~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~-lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~  352 (427)
T PRK02889        275 G-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQR-VTFTGSYNTSPRISPDGKLLAYISRVGGAF  352 (427)
T ss_pred             C-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEE-EecCCCCcCceEECCCCCEEEEEEccCCcE
Confidence            4 4445445555677889999998776554 456666654  4444322 222223344678999999998777553   


Q ss_pred             eEEEEecCCCceEEEecCCCEEEEEecCceeecccccCCccccccCCceEEeeehHHH
Q psy4650         187 SVLLKVGREEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSVHVT  244 (381)
Q Consensus       187 ~v~i~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~d~  244 (381)
                      .+.+          ||..++....-....        ......|+|||+.+++...+.
T Consensus       353 ~I~v----------~d~~~g~~~~lt~~~--------~~~~p~~spdg~~l~~~~~~~  392 (427)
T PRK02889        353 KLYV----------QDLATGQVTALTDTT--------RDESPSFAPNGRYILYATQQG  392 (427)
T ss_pred             EEEE----------EECCCCCeEEccCCC--------CccCceECCCCCEEEEEEecC
Confidence            2444          777666543221110        111247899999998877654

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.92  E-value=4.2e-07  Score=80.54  Aligned_cols=206  Identities=15%  Similarity=0.087  Sum_probs=142.9

Q ss_pred             ccccccCCC-hhhHHHHhhhcceeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccE
Q psy4650          16 KRALNTELT-ETDIETIVRETKVDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPY   94 (381)
Q Consensus        16 k~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~   94 (381)
                      |--||.+.+ .++..+......|.--+..-.+.+++..|. |...+.++....  .+ . -+|.+.|.-..+..+++  .
T Consensus       301 kldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-GkaFi~~~~~~~--~i-q-v~~~~~VrY~r~~~~~e--~  373 (668)
T COG4946         301 KLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKAFIMRPWDGY--SI-Q-VGKKGGVRYRRIQVDPE--G  373 (668)
T ss_pred             eeecCCccccccccccccCHHHhhhhhccCCCcEEEEEec-CcEEEECCCCCe--eE-E-cCCCCceEEEEEccCCc--c
Confidence            444665665 555555544444443334444567777665 567777765322  22 2 26788898888887776  5


Q ss_pred             EEEEcCCC-eEEEEECCCCeEEEEeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEecCCcceEEEEEc
Q psy4650          95 LISGADDR-LVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSL  173 (381)
Q Consensus        95 l~s~~~d~-~v~vwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~  173 (381)
                      ++.|..|| .+-++|..+++. ..+...-+.|.++..+|+|..++.+.....+.+.|+.+|.....-+...+-++...||
T Consensus       374 ~vigt~dgD~l~iyd~~~~e~-kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~  452 (668)
T COG4946         374 DVIGTNDGDKLGIYDKDGGEV-KRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWH  452 (668)
T ss_pred             eEEeccCCceEEEEecCCceE-EEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEc
Confidence            88899999 899999998874 4455566789999999999999999989999999999998766555566789999999


Q ss_pred             CCCCEEEEEeCCCeEEEEecCCCceEEEecCCCEEEEEecCceeecccccCCccccccCCceEEeeehH
Q psy4650         174 KGSNNVAIGYDEGSVLLKVGREEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSVH  242 (381)
Q Consensus       174 ~~~~~l~~~~~dg~v~i~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~  242 (381)
                      |+++++|-+--+|.+.      +.+..+|..+++..-. .++      .++...-+|.|||+.|...+.
T Consensus       453 ~nsr~iAYafP~gy~t------q~Iklydm~~~Kiy~v-TT~------ta~DfsPaFD~d~ryLYfLs~  508 (668)
T COG4946         453 PNSRWIAYAFPEGYYT------QSIKLYDMDGGKIYDV-TTP------TAYDFSPAFDPDGRYLYFLSA  508 (668)
T ss_pred             CCceeEEEecCcceee------eeEEEEecCCCeEEEe-cCC------cccccCcccCCCCcEEEEEec
Confidence            9999999988776542      2333488877764432 222      122222367788888876654

>KOG2321|consensus

Probab=98.92  E-value=7.4e-08  Score=87.01  Aligned_cols=166  Identities=17%  Similarity=0.202  Sum_probs=119.8

Q ss_pred             cceeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeecc--------------------------cc----------
Q psy4650          35 TKVDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYG--------------------------HE----------   78 (381)
Q Consensus        35 ~~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~--------------------------h~----------   78 (381)
                      .+..|-..+++..++++|-+.-.|++||+.+.+-..-+.+..                          |.          
T Consensus        53 ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy~~RI  132 (703)
T KOG2321|consen   53 ASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHYRTRI  132 (703)
T ss_pred             ccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeeeeeec
Confidence            345677788877778889999999999985433222221111                          11          


Q ss_pred             -ccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEEEeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeee
Q psy4650          79 -KGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLE  157 (381)
Q Consensus        79 -~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~  157 (381)
                       ..-.+++++....  -|..++....|.=+++..|..+..+....+.++++..++...++++|+.+|.|-+||.++...+
T Consensus       133 P~~GRDm~y~~~sc--Dly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv  210 (703)
T KOG2321|consen  133 PKFGRDMKYHKPSC--DLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRV  210 (703)
T ss_pred             CcCCccccccCCCc--cEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhhhh
Confidence             0112333332222  2445555556666788889888888888899999999999999999999999999999987776


Q ss_pred             EEEecCC------c-----ceEEEEEcCCCCEEEEEeCCCeEEEEecCCCceEEEecCCCEEEEEe
Q psy4650         158 ISLTYGL------E-----RVWTISSLKGSNNVAIGYDEGSVLLKVGREEPAVSMDVNGCKIIWAR  212 (381)
Q Consensus       158 ~~~~~~~------~-----~v~~v~~~~~~~~l~~~~~dg~v~i~~~~~~~~~~~d~~~~~~~~~~  212 (381)
                      .++....      +     .|+++.|+.+|-.+++|..+|.+.+          ||.++..++...
T Consensus       211 ~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~i----------yDLRa~~pl~~k  266 (703)
T KOG2321|consen  211 GTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLI----------YDLRASKPLLVK  266 (703)
T ss_pred             eeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEE----------EEcccCCceeec
Confidence            6664322      2     4999999999999999999999999          888777766543

>PRK04922 tolB translocation protein TolB; Provisional

Probab=98.91  E-value=1.5e-07  Score=87.85  Aligned_cols=184  Identities=11%  Similarity=0.055  Sum_probs=111.1

Q ss_pred             eeeecCCCceEEEEEec--CCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCC--eEEEEECCCCe
Q psy4650          38 DITTNKDMIEYKISYQE--SSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDR--LVKIWDYQNKT  113 (381)
Q Consensus        38 ~i~~~~~~~~~~~s~~~--d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~--~v~vwd~~~~~  113 (381)
                      .....+++..+.++...  ...+.+|++.......   +..+.+...++.|+|+|.. .+++.+.++  .|.+||+.++.
T Consensus       208 ~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~---l~~~~g~~~~~~~SpDG~~-l~~~~s~~g~~~Iy~~d~~~g~  283 (433)
T PRK04922        208 SPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL---VASFRGINGAPSFSPDGRR-LALTLSRDGNPEIYVMDLGSRQ  283 (433)
T ss_pred             cccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE---eccCCCCccCceECCCCCE-EEEEEeCCCCceEEEEECCCCC
Confidence            34456665544444322  3468899986533333   3334445567899999874 334555555  69999998887


Q ss_pred             EEEEeccCCCCEEEEEEecCCCEEEEEeC-CCC--EEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCC-CeEE
Q psy4650         114 CVQTLEGHGQNISAVCFHPELPIVITGSE-DGS--VRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDE-GSVL  189 (381)
Q Consensus       114 ~~~~~~~~~~~v~~~~~~p~~~~l~s~~~-d~~--i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d-g~v~  189 (381)
                      .. .+..+.......+|+|+|+.++.++. ++.  |.++|+.+++... +...........|+|+|+.++..+.+ +...
T Consensus       284 ~~-~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~-lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~  361 (433)
T PRK04922        284 LT-RLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER-LTFQGNYNARASVSPDGKKIAMVHGSGGQYR  361 (433)
T ss_pred             eE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE-eecCCCCccCEEECCCCCEEEEEECCCCcee
Confidence            43 44445555577899999998877654 444  6667777765432 22233344568999999998876543 3222


Q ss_pred             EEecCCCceEEEecCCCEEEEEecCceeecccccCCccccccCCceEEeeehHH
Q psy4650         190 LKVGREEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSVHV  243 (381)
Q Consensus       190 i~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~d  243 (381)
                      +        ..||..++... .+...       .......|+|||+.++.....
T Consensus       362 I--------~v~d~~~g~~~-~Lt~~-------~~~~~p~~spdG~~i~~~s~~  399 (433)
T PRK04922        362 I--------AVMDLSTGSVR-TLTPG-------SLDESPSFAPNGSMVLYATRE  399 (433)
T ss_pred             E--------EEEECCCCCeE-ECCCC-------CCCCCceECCCCCEEEEEEec
Confidence            2        22777666543 11111       011124688999988876654

>KOG3881|consensus

Probab=98.91  E-value=9.9e-08  Score=82.29  Aligned_cols=193  Identities=15%  Similarity=0.089  Sum_probs=141.1

Q ss_pred             CCceEEEEEecCCeEEEecCCCcc--ceeeEeeccccccEEEEEeeeCCCccEEEEEcCC--CeEEEEECCCCeEEEEec
Q psy4650          44 DMIEYKISYQESSRVKAFNPIQVA--TLILKTLYGHEKGVNCVDYYHGGDKPYLISGADD--RLVKIWDYQNKTCVQTLE  119 (381)
Q Consensus        44 ~~~~~~~s~~~d~~v~i~~~~~~~--~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d--~~v~vwd~~~~~~~~~~~  119 (381)
                      .....+++|-.+|.+.+|..+...  ...+..+..+ ..+..+.-++. ....+++||..  ..+.+||+...+++..-+
T Consensus       113 ~~dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~-~p~Iva~GGke~~n~lkiwdle~~~qiw~aK  190 (412)
T KOG3881|consen  113 LADGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDT-DPYIVATGGKENINELKIWDLEQSKQIWSAK  190 (412)
T ss_pred             hcCCEEEEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCC-CCceEecCchhcccceeeeecccceeeeecc
Confidence            335578899999999999986322  2334444333 44555555543 23367779888  889999999887666554


Q ss_pred             cCC---------CCEEEEEEecC--CCEEEEEeCCCCEEEEeCCCCe-eeEEEecCCcceEEEEEcCCCCEEEEEeCCCe
Q psy4650         120 GHG---------QNISAVCFHPE--LPIVITGSEDGSVRVWHSGTHR-LEISLTYGLERVWTISSLKGSNNVAIGYDEGS  187 (381)
Q Consensus       120 ~~~---------~~v~~~~~~p~--~~~l~s~~~d~~i~vwd~~~~~-~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~  187 (381)
                      .-.         -+++.+.|-|.  ...++++..-+.+++||.+.++ ++..+......++++...|.|+.+.+|..-|.
T Consensus       191 NvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~  270 (412)
T KOG3881|consen  191 NVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQ  270 (412)
T ss_pred             CCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccch
Confidence            321         24578889887  6799999999999999998764 67788888899999999999999999998888


Q ss_pred             EEEEecCCCceEEEecCCCEEEEEecCceeecccccCCccccccCCceEEeeehHHHHHhccCCCc
Q psy4650         188 VLLKVGREEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSVHVTIKYRLDISD  253 (381)
Q Consensus       188 v~i~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~d~~~~~~d~~~  253 (381)
                      +..          ||.++++..-....     .+.+...++...|.+.++++++-|....++|...
T Consensus       271 l~~----------FD~r~~kl~g~~~k-----g~tGsirsih~hp~~~~las~GLDRyvRIhD~kt  321 (412)
T KOG3881|consen  271 LAK----------FDLRGGKLLGCGLK-----GITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKT  321 (412)
T ss_pred             hhe----------ecccCceeeccccC-----CccCCcceEEEcCCCceEEeeccceeEEEeeccc
Confidence            887          89888886543211     1222222234457889999999999888888876

>PRK03629 tolB translocation protein TolB; Provisional

Probab=98.91  E-value=2.6e-07  Score=86.05  Aligned_cols=165  Identities=13%  Similarity=0.079  Sum_probs=105.0

Q ss_pred             eEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEc---CCCeEEEEECCCCeEEEEeccCCCCEEEEEEecC
Q psy4650          57 RVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGA---DDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPE  133 (381)
Q Consensus        57 ~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~---~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~p~  133 (381)
                      .+.++|.....   .+.+..+.+.+.+.+|+|+|.  .|+..+   .+..+.+|++.+++.... ....+.+..+.|+|+
T Consensus       180 ~l~~~d~dg~~---~~~lt~~~~~~~~p~wSPDG~--~la~~s~~~g~~~i~i~dl~~G~~~~l-~~~~~~~~~~~~SPD  253 (429)
T PRK03629        180 ELRVSDYDGYN---QFVVHRSPQPLMSPAWSPDGS--KLAYVTFESGRSALVIQTLANGAVRQV-ASFPRHNGAPAFSPD  253 (429)
T ss_pred             eEEEEcCCCCC---CEEeecCCCceeeeEEcCCCC--EEEEEEecCCCcEEEEEECCCCCeEEc-cCCCCCcCCeEECCC
Confidence            68888875322   233445677899999999998  455432   346799999988864332 222333457899999


Q ss_pred             CCEEEEE-eCCC--CEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCC-CeEEEEecCCCceEEEecCCCEEE
Q psy4650         134 LPIVITG-SEDG--SVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDE-GSVLLKVGREEPAVSMDVNGCKII  209 (381)
Q Consensus       134 ~~~l~s~-~~d~--~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d-g~v~i~~~~~~~~~~~d~~~~~~~  209 (381)
                      |+.++.. +.++  .|.+||+.++..... ..+...+....|+|+|+.++..+.+ |...+|.        +|..++...
T Consensus       254 G~~La~~~~~~g~~~I~~~d~~tg~~~~l-t~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~--------~d~~~g~~~  324 (429)
T PRK03629        254 GSKLAFALSKTGSLNLYVMDLASGQIRQV-TDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYK--------VNINGGAPQ  324 (429)
T ss_pred             CCEEEEEEcCCCCcEEEEEECCCCCEEEc-cCCCCCcCceEECCCCCEEEEEeCCCCCceEEE--------EECCCCCeE
Confidence            9977754 3344  588999988875443 3344567789999999988877754 4444432        666655432


Q ss_pred             EEecCceeecccccCCccccccCCceEEeeehHH
Q psy4650         210 WARHSEVQQANLKTMPEVFENITAGVVLTLSVHV  243 (381)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~d  243 (381)
                      .- ...      ........|+|||..+++....
T Consensus       325 ~l-t~~------~~~~~~~~~SpDG~~Ia~~~~~  351 (429)
T PRK03629        325 RI-TWE------GSQNQDADVSSDGKFMVMVSSN  351 (429)
T ss_pred             Ee-ecC------CCCccCEEECCCCCEEEEEEcc
Confidence            11 110      0111124678999998876543

>KOG0101|consensus

Probab=98.89  E-value=2e-09  Score=100.15  Aligned_cols=76  Identities=28%  Similarity=0.510  Sum_probs=73.1

Q ss_pred             HHHhhhhhhhhHhhhccccceeeEeeccccCcceEEeecHHHHHHHHHHHHHHhHHHHHHHHHhCCCCcccccccc
Q psy4650         305 GGLLTSFVQPCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIGGLLTSFVQPIEDVLSRSNITHDQINKFT  380 (381)
Q Consensus       305 ~~l~~~~~~~~~~~Ls~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~v~  380 (381)
                      ...|+..+|.+|+.||....+.+.+++|+++.+++.+++|.+||+++.+||.++++|++++|+|+++++.+|++||
T Consensus       264 l~rLR~a~E~aKr~LS~~~~~~i~vdsL~~g~d~~~~itrarfe~l~~dlf~~~~~~v~~~L~da~~dk~~i~~vv  339 (620)
T KOG0101|consen  264 LRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRSTLEPVEKALKDAKLDKSDIDEVV  339 (620)
T ss_pred             HHHHHHHHHHHHhhhcccccceeccchhhccccccceeehhhhhhhhhHHHHHHHHHHHHHHHhhccCccCCceeE
Confidence            4568889999999999999999999999999999999999999999999999999999999999999999999987

>KOG1963|consensus

Probab=98.89  E-value=1e-07  Score=90.06  Aligned_cols=145  Identities=16%  Similarity=0.226  Sum_probs=115.5

Q ss_pred             CceEEEEEecCCeEEEecCCC--ccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEEEeccCC
Q psy4650          45 MIEYKISYQESSRVKAFNPIQ--VATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHG  122 (381)
Q Consensus        45 ~~~~~~s~~~d~~v~i~~~~~--~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~  122 (381)
                      ...|++++..||.|.+|.-..  ....-.+.+.=|...|.++.|+++|.  +|.|||..+.+-+|...+++ .+-+.--.
T Consensus       216 n~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~--~LlSGG~E~VLv~Wq~~T~~-kqfLPRLg  292 (792)
T KOG1963|consen  216 NERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGA--YLLSGGREGVLVLWQLETGK-KQFLPRLG  292 (792)
T ss_pred             ccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCc--eEeecccceEEEEEeecCCC-cccccccC
Confidence            366999999999999996543  23334455667899999999999998  89999999999999999998 44555567


Q ss_pred             CCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEec-----------CCcceEEEEEcCCCCEEEEEeCCCeEEEE
Q psy4650         123 QNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTY-----------GLERVWTISSLKGSNNVAIGYDEGSVLLK  191 (381)
Q Consensus       123 ~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~-----------~~~~v~~v~~~~~~~~l~~~~~dg~v~i~  191 (381)
                      ++|..+.++|++...+....|+.|.+....+-....++.+           ..+-.+.++++|..+.++..+..|.+.++
T Consensus       293 s~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~y  372 (792)
T KOG1963|consen  293 SPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFY  372 (792)
T ss_pred             CeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEE
Confidence            8999999999999998888999999998765443333322           24456778899977788888889999984


Q ss_pred             e
Q psy4650         192 V  192 (381)
Q Consensus       192 ~  192 (381)
                      +
T Consensus       373 d  373 (792)
T KOG1963|consen  373 D  373 (792)
T ss_pred             e
Confidence            3

>KOG1240|consensus

Probab=98.88  E-value=2.3e-08  Score=97.59  Aligned_cols=176  Identities=16%  Similarity=0.148  Sum_probs=121.5

Q ss_pred             ecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCC-------eEEEEeccCCCCEEEEEEecC
Q psy4650          61 FNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNK-------TCVQTLEGHGQNISAVCFHPE  133 (381)
Q Consensus        61 ~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~-------~~~~~~~~~~~~v~~~~~~p~  133 (381)
                      |++   .+..+.+|..|...+..++.+++.. .+++|||.||+|++|+...-       +...++.-....+.++.+.+.
T Consensus      1034 W~p---~G~lVAhL~Ehs~~v~k~a~s~~~~-s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~ 1109 (1431)
T KOG1240|consen 1034 WNP---RGILVAHLHEHSSAVIKLAVSSEHT-SLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGN 1109 (1431)
T ss_pred             CCc---cceEeehhhhccccccceeecCCCC-ceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccC
Confidence            665   4677888999999999999887653 39999999999999998642       223344434578899999999


Q ss_pred             CCEEEEEeCCCCEEEEeCCCC--e-----eeEEEecC-CcceEEE-EEcCC-CC-EEEEEeCCCeEEEEecCCCceEEEe
Q psy4650         134 LPIVITGSEDGSVRVWHSGTH--R-----LEISLTYG-LERVWTI-SSLKG-SN-NVAIGYDEGSVLLKVGREEPAVSMD  202 (381)
Q Consensus       134 ~~~l~s~~~d~~i~vwd~~~~--~-----~~~~~~~~-~~~v~~v-~~~~~-~~-~l~~~~~dg~v~i~~~~~~~~~~~d  202 (381)
                      +..+|.++.||.|++.+++..  .     .....+.+ .+.+.++ +|... +. .++.+...+.          ++.||
T Consensus      1110 ~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~----------iv~~D 1179 (1431)
T KOG1240|consen 1110 GDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSR----------IVSWD 1179 (1431)
T ss_pred             CCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccc----------eEEec
Confidence            999999999999999998752  1     11111111 1222222 22211 12 3444444444          44599


Q ss_pred             cCCCEEEEEecCceeecccccCCccccccCCceEEeeehHHHHHhccCCCcC
Q psy4650         203 VNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSVHVTIKYRLDISDS  254 (381)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~d~~~~~~d~~~~  254 (381)
                      ..+....|....+.....+.+    ++.+|.+.++++|...+....||++..
T Consensus      1180 ~r~~~~~w~lk~~~~hG~vTS----i~idp~~~WlviGts~G~l~lWDLRF~ 1227 (1431)
T KOG1240|consen 1180 TRMRHDAWRLKNQLRHGLVTS----IVIDPWCNWLVIGTSRGQLVLWDLRFR 1227 (1431)
T ss_pred             chhhhhHHhhhcCccccceeE----EEecCCceEEEEecCCceEEEEEeecC
Confidence            988888998876654444443    345689999999999998889998754

>KOG0102|consensus

Probab=98.87  E-value=3.9e-09  Score=94.88  Aligned_cols=80  Identities=16%  Similarity=0.286  Sum_probs=73.3

Q ss_pred             HHHHHHHhhhhhhhhHhhhccccceeeEeeccccC----cceEEeecHHHHHHHHHHHHHHhHHHHHHHHHhCCCCcccc
Q psy4650         301 ESLIGGLLTSFVQPCMHVLSTLQSSNVFVESLYDG----LDFHHNVSRARFESLIGGLLTSFVQPIEDVLSRSNITHDQI  376 (381)
Q Consensus       301 e~l~~~l~~~~~~~~~~~Ls~~~~~~~~~~~~~~~----~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~i  376 (381)
                      ...+...++...|+.|..||......++++.+...    .+++..++|.+||+++.++++|+++||+++|+||+++.+||
T Consensus       275 d~~a~qrl~eaaEkaKielSs~~~tei~lp~iTada~gpkh~~i~~tr~efe~~v~~lI~Rti~p~~~aL~dA~~~~~di  354 (640)
T KOG0102|consen  275 DRMALQRLREAAEKAKIELSSRQQTEINLPFITADASGPKHLNIELTRGEFEELVPSLIARTIEPCKKALRDASLSSSDI  354 (640)
T ss_pred             hHHHHHHHHHHHHhhhhhhhhcccceeccceeeccCCCCeeEEEeecHHHHHHhhHHHHHhhhhHHHHHHHhccCChhhh
Confidence            44566777888999999999999999999998754    78999999999999999999999999999999999999999


Q ss_pred             cccc
Q psy4650         377 NKFT  380 (381)
Q Consensus       377 ~~v~  380 (381)
                      +||+
T Consensus       355 ~EV~  358 (640)
T KOG0102|consen  355 NEVI  358 (640)
T ss_pred             hhhh
Confidence            9997

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=98.87  E-value=5.6e-07  Score=81.58  Aligned_cols=139  Identities=18%  Similarity=0.247  Sum_probs=96.2

Q ss_pred             eEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEEEeccCCCCEE
Q psy4650          47 EYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNIS  126 (381)
Q Consensus        47 ~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~  126 (381)
                      .++++-..++.+.+.|...  ...+..+......-..+.++|++.  ++..++.||.|.++|+.+++.+..++... ...
T Consensus         7 l~~V~~~~~~~v~viD~~t--~~~~~~i~~~~~~h~~~~~s~Dgr--~~yv~~rdg~vsviD~~~~~~v~~i~~G~-~~~   81 (369)
T PF02239_consen    7 LFYVVERGSGSVAVIDGAT--NKVVARIPTGGAPHAGLKFSPDGR--YLYVANRDGTVSVIDLATGKVVATIKVGG-NPR   81 (369)
T ss_dssp             EEEEEEGGGTEEEEEETTT---SEEEEEE-STTEEEEEE-TT-SS--EEEEEETTSEEEEEETTSSSEEEEEE-SS-EEE
T ss_pred             EEEEEecCCCEEEEEECCC--CeEEEEEcCCCCceeEEEecCCCC--EEEEEcCCCeEEEEECCcccEEEEEecCC-Ccc
Confidence            3556777789999999863  456677765544445577888876  67777899999999999999999987544 458


Q ss_pred             EEEEecCCCEEEEEe-CCCCEEEEeCCCCeeeEEEecC-------CcceEEEEEcCCCCEEEEEeC-CCeEEE
Q psy4650         127 AVCFHPELPIVITGS-EDGSVRVWHSGTHRLEISLTYG-------LERVWTISSLKGSNNVAIGYD-EGSVLL  190 (381)
Q Consensus       127 ~~~~~p~~~~l~s~~-~d~~i~vwd~~~~~~~~~~~~~-------~~~v~~v~~~~~~~~l~~~~~-dg~v~i  190 (381)
                      +++++++|++++.++ .++.+.++|..+.+.+..+...       ..++..+..+|....++..-. .+.+.+
T Consensus        82 ~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~v  154 (369)
T PF02239_consen   82 GIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWV  154 (369)
T ss_dssp             EEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEE
T ss_pred             eEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEE
Confidence            899999999887665 5899999999999998887543       346778888888875555544 366655

...

>KOG4497|consensus

Probab=98.86  E-value=9e-08  Score=80.82  Aligned_cols=190  Identities=13%  Similarity=0.061  Sum_probs=126.0

Q ss_pred             ceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEEEeccCCCCE
Q psy4650          46 IEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNI  125 (381)
Q Consensus        46 ~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v  125 (381)
                      ++|+++++.- .+.|-|.++   ..++.+..--+.|.-+.|.-+.. ..+.....|+.|.+|++...+-...+.+..+++
T Consensus        20 g~yiAs~~~y-rlviRd~~t---lq~~qlf~cldki~yieW~ads~-~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agl   94 (447)
T KOG4497|consen   20 GNYIASLSRY-RLVIRDSET---LQLHQLFLCLDKIVYIEWKADSC-HILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGL   94 (447)
T ss_pred             CCeeeeeeee-EEEEeccch---hhHHHHHHHHHHhhheeeeccce-eeeeeeeccceEEEEEeecceeEEEeccCCCcc
Confidence            6799988875 555666532   22333333346777788876655 244556778899999999988888898888999


Q ss_pred             EEEEEecCCCE-EEEEeCCCCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCCCeE---EE-----------
Q psy4650         126 SAVCFHPELPI-VITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSV---LL-----------  190 (381)
Q Consensus       126 ~~~~~~p~~~~-l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v---~i-----------  190 (381)
                      .+++|+|+|+. |.+...+-.|.+|.+.+..... ++.....+..++|+|+|++.+.++.-...   .+           
T Consensus        95 s~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~-~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~  173 (447)
T KOG4497|consen   95 SSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL-LPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKE  173 (447)
T ss_pred             eeeeECCCcceEeeeecceeEEEEEEeccceeEE-ecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHh
Confidence            99999999974 5566669999999998766443 33444566889999999998887653221   11           


Q ss_pred             ------------EecCCCceEEEecCCCEEEEEecCceeecccccCCccccccCCceEEeeehHHHHHhc
Q psy4650         191 ------------KVGREEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSVHVTIKYR  248 (381)
Q Consensus       191 ------------~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~d~~~~~  248 (381)
                                  |..++..+..||.-=...++...      .-.|... .+++|-++++++|+.|+..+.
T Consensus       174 f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe------~~lG~k~-v~wsP~~qflavGsyD~~lrv  236 (447)
T KOG4497|consen  174 FKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYE------RGLGLKF-VEWSPCNQFLAVGSYDQMLRV  236 (447)
T ss_pred             cCCCcccccCceECCCCcEEEEecchhhheeeeee------eccceeE-EEeccccceEEeeccchhhhh
Confidence                        44444444555542111111110      1112222 578999999999999976543

>KOG0280|consensus

Probab=98.84  E-value=5e-08  Score=81.11  Aligned_cols=169  Identities=17%  Similarity=0.218  Sum_probs=112.7

Q ss_pred             ccccccCCChhhHHHHhhhcceeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEE
Q psy4650          16 KRALNTELTETDIETIVRETKVDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYL   95 (381)
Q Consensus        16 k~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l   95 (381)
                      +....++.+..+++.. .-+.-++....  .. ++++-.+|.+.+-+.....-...+++++|.-..+.+.|+.... +++
T Consensus       107 ss~~L~~ls~~ki~~~-~~lslD~~~~~--~~-i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~p-nlv  181 (339)
T KOG0280|consen  107 SSVHLRGLSSKKISVV-EALSLDISTSG--TK-IFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEP-NLV  181 (339)
T ss_pred             eeeeecccchhhhhhe-eeeEEEeeccC--ce-EEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCC-ceE
Confidence            3344555555555444 11222232222  22 5666667777744433222223447899999999999975433 589


Q ss_pred             EEEcCCCeEEEEECC-CCeEEEE-eccCCCCEEEEEEecC-CCEEEEEeCCCCEEEEeCC-CCeeeEEEecCCcceEEEE
Q psy4650          96 ISGADDRLVKIWDYQ-NKTCVQT-LEGHGQNISAVCFHPE-LPIVITGSEDGSVRVWHSG-THRLEISLTYGLERVWTIS  171 (381)
Q Consensus        96 ~s~~~d~~v~vwd~~-~~~~~~~-~~~~~~~v~~~~~~p~-~~~l~s~~~d~~i~vwd~~-~~~~~~~~~~~~~~v~~v~  171 (381)
                      .+||.|+.+..||++ .++.+.. .+-|+.+|.++.-+|. +.++++|+.|..|++||.+ -++++..-. -.+.|+.++
T Consensus       182 ytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~-v~GGVWRi~  260 (339)
T KOG0280|consen  182 YTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAK-VGGGVWRIK  260 (339)
T ss_pred             EecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCc-cccceEEEE
Confidence            999999999999998 4444544 5679999999998875 5599999999999999998 456655433 237899999


Q ss_pred             EcCCC--CEEEEEeCCCeEEE
Q psy4650         172 SLKGS--NNVAIGYDEGSVLL  190 (381)
Q Consensus       172 ~~~~~--~~l~~~~~dg~v~i  190 (381)
                      ++|.-  ..++++-.+|.-.+
T Consensus       261 ~~p~~~~~lL~~CMh~G~ki~  281 (339)
T KOG0280|consen  261 HHPEIFHRLLAACMHNGAKIL  281 (339)
T ss_pred             ecchhhhHHHHHHHhcCceEE
Confidence            99963  34555555554433

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=98.84  E-value=4.6e-07  Score=84.49  Aligned_cols=184  Identities=13%  Similarity=0.064  Sum_probs=111.8

Q ss_pred             eeecCCCceEEEEEecC--CeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCC--eEEEEECCCCeE
Q psy4650          39 ITTNKDMIEYKISYQES--SRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDR--LVKIWDYQNKTC  114 (381)
Q Consensus        39 i~~~~~~~~~~~s~~~d--~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~--~v~vwd~~~~~~  114 (381)
                      ..+.+++..+.++...+  ..+++|++.....   ..+..+.+.+.++.|+|++.. ++++.+.++  .|.+|++.++..
T Consensus       195 p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~---~~~~~~~~~~~~~~~spDg~~-l~~~~~~~~~~~i~~~d~~~~~~  270 (417)
T TIGR02800       195 PAWSPDGQKLAYVSFESGKPEIYVQDLATGQR---EKVASFPGMNGAPAFSPDGSK-LAVSLSKDGNPDIYVMDLDGKQL  270 (417)
T ss_pred             ccCCCCCCEEEEEEcCCCCcEEEEEECCCCCE---EEeecCCCCccceEECCCCCE-EEEEECCCCCccEEEEECCCCCE
Confidence            34556654444433322  4789999864322   233345566778999998873 444555544  588889887754


Q ss_pred             EEEeccCCCCEEEEEEecCCCEEEEEeC-CC--CEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCCC-eEEE
Q psy4650         115 VQTLEGHGQNISAVCFHPELPIVITGSE-DG--SVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEG-SVLL  190 (381)
Q Consensus       115 ~~~~~~~~~~v~~~~~~p~~~~l~s~~~-d~--~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg-~v~i  190 (381)
                      . .+..+........|+|+|+.++.++. ++  .|.++|+.++... .+..+........|+|+|++++.++.++ ...+
T Consensus       271 ~-~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i  348 (417)
T TIGR02800       271 T-RLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTFRGGYNASPSWSPDGDLIAFVHREGGGFNI  348 (417)
T ss_pred             E-ECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecCCCCccCeEECCCCCEEEEEEccCCceEE
Confidence            3 34444444567789999998776654 33  5778888776643 3443445667889999999988887664 2222


Q ss_pred             EecCCCceEEEecCCCEEEEEecCceeecccccCCccccccCCceEEeeehHHH
Q psy4650         191 KVGREEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSVHVT  244 (381)
Q Consensus       191 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~d~  244 (381)
                              ..+|..++....-...        .......|+|||..+++.....
T Consensus       349 --------~~~d~~~~~~~~l~~~--------~~~~~p~~spdg~~l~~~~~~~  386 (417)
T TIGR02800       349 --------AVMDLDGGGERVLTDT--------GLDESPSFAPNGRMILYATTRG  386 (417)
T ss_pred             --------EEEeCCCCCeEEccCC--------CCCCCceECCCCCEEEEEEeCC
Confidence                    2277765432211110        0011135789998888766543

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG0104|consensus

Probab=98.82  E-value=2.8e-09  Score=99.12  Aligned_cols=77  Identities=31%  Similarity=0.446  Sum_probs=72.8

Q ss_pred             HHHHhhhhhhhhHhhhccccceeeEeeccccCcceEEeecHHHHHHHHHHHHHHhHHHHHHHHHhCCCCcccccccc
Q psy4650         304 IGGLLTSFVQPCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIGGLLTSFVQPIEDVLSRSNITHDQINKFT  380 (381)
Q Consensus       304 ~~~l~~~~~~~~~~~Ls~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~v~  380 (381)
                      ++--+.+.++.+|.+||.++.+.+.|+++.+.++|..++||+.||+||++++.|...|+++||+.|+|+.++|+.||
T Consensus       293 AmaKl~keA~R~K~vLSANsea~aqIEsL~ddiDFr~kvTRe~fEelc~Dl~~r~~~Pi~dAl~~a~l~ldeIn~Vi  369 (902)
T KOG0104|consen  293 AMAKLNKEAERLKQVLSANSEAFAQIESLIDDIDFRLKVTREEFEELCADLEERIVEPINDALKKAQLSLDEINQVI  369 (902)
T ss_pred             HHHHHHHHHHHHHHHhhcchhhHHHHHHHhhccccccceeHHHHHHHHHHHHHhhhhhHHHHHHhcCCChhhhheeE
Confidence            34456778899999999999999999999999999999999999999999999999999999999999999999997

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.80  E-value=2.3e-08  Score=58.86  Aligned_cols=38  Identities=37%  Similarity=0.917  Sum_probs=36.3

Q ss_pred             eEEEEeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEe
Q psy4650         113 TCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWH  150 (381)
Q Consensus       113 ~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd  150 (381)
                      +++..+.+|.++|.+++|+|++..+++|+.|+.|++||
T Consensus         2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            56889999999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>PRK04792 tolB translocation protein TolB; Provisional

Probab=98.75  E-value=1.4e-06  Score=81.51  Aligned_cols=185  Identities=14%  Similarity=0.086  Sum_probs=109.6

Q ss_pred             eeeecCCCceEEEEEecCC--eEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCe--EEEEECCCCe
Q psy4650          38 DITTNKDMIEYKISYQESS--RVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRL--VKIWDYQNKT  113 (381)
Q Consensus        38 ~i~~~~~~~~~~~s~~~d~--~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~--v~vwd~~~~~  113 (381)
                      ...+++++..+.++...++  .+.+||+.......+..+.+   ......|+|+|.. ++++.+.++.  |.++|+.+++
T Consensus       222 ~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g---~~~~~~wSPDG~~-La~~~~~~g~~~Iy~~dl~tg~  297 (448)
T PRK04792        222 SPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPG---INGAPRFSPDGKK-LALVLSKDGQPEIYVVDIATKA  297 (448)
T ss_pred             CceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCC---CcCCeeECCCCCE-EEEEEeCCCCeEEEEEECCCCC
Confidence            4556677665555544444  57778876543333433333   3346899999883 3345566664  7777888776


Q ss_pred             EEEEeccCCCCEEEEEEecCCCEEEEEeC-CC--CEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeC-CCeEE
Q psy4650         114 CVQTLEGHGQNISAVCFHPELPIVITGSE-DG--SVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYD-EGSVL  189 (381)
Q Consensus       114 ~~~~~~~~~~~v~~~~~~p~~~~l~s~~~-d~--~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~-dg~v~  189 (381)
                      .. .+..+.......+|+|+|+.++..+. ++  .|.++|+.+++... +...........|+|+|+.++..+. ++...
T Consensus       298 ~~-~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~  375 (448)
T PRK04792        298 LT-RITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR-LTFEGEQNLGGSITPDGRSMIMVNRTNGKFN  375 (448)
T ss_pred             eE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-EecCCCCCcCeeECCCCCEEEEEEecCCceE
Confidence            43 34445555678899999997765543 33  46667887776433 2222222345789999998877654 34444


Q ss_pred             EEecCCCceEEEecCCCEEEEEecCceeecccccCCccccccCCceEEeeehHHH
Q psy4650         190 LKVGREEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSVHVT  244 (381)
Q Consensus       190 i~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~d~  244 (381)
                      +|.        +|..++.... +...    .   ......|+|||+.+++.....
T Consensus       376 I~~--------~dl~~g~~~~-lt~~----~---~d~~ps~spdG~~I~~~~~~~  414 (448)
T PRK04792        376 IAR--------QDLETGAMQV-LTST----R---LDESPSVAPNGTMVIYSTTYQ  414 (448)
T ss_pred             EEE--------EECCCCCeEE-ccCC----C---CCCCceECCCCCEEEEEEecC
Confidence            433        6776664321 1111    0   111135789999888766543

>KOG0280|consensus

Probab=98.74  E-value=4.5e-07  Score=75.55  Aligned_cols=145  Identities=16%  Similarity=0.166  Sum_probs=105.8

Q ss_pred             EEEEEecCCeEEEecCCCc-cceeeEeecccccc---EEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeE--EEEeccC
Q psy4650          48 YKISYQESSRVKAFNPIQV-ATLILKTLYGHEKG---VNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTC--VQTLEGH  121 (381)
Q Consensus        48 ~~~s~~~d~~v~i~~~~~~-~~~~~~~l~~h~~~---v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~--~~~~~~~  121 (381)
                      .++-+-..|.+.+|..... +...+..+.+-.-.   -.++.|++.+.  .++++-.+|.+.+-+......  .+.+++|
T Consensus        87 ~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~--~i~vs~s~G~~~~v~~t~~~le~vq~wk~H  164 (339)
T KOG0280|consen   87 NLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGT--KIFVSDSRGSISGVYETEMVLEKVQTWKVH  164 (339)
T ss_pred             eeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCc--eEEEEcCCCcEEEEecceeeeeeccccccc
Confidence            5566677888888876432 22223333322222   34678888777  588888899998666555543  4478999


Q ss_pred             CCCEEEEEEecCCC-EEEEEeCCCCEEEEeCC-CCeeeEE-EecCCcceEEEEEcC-CCCEEEEEeCCCeEEEEecC
Q psy4650         122 GQNISAVCFHPELP-IVITGSEDGSVRVWHSG-THRLEIS-LTYGLERVWTISSLK-GSNNVAIGYDEGSVLLKVGR  194 (381)
Q Consensus       122 ~~~v~~~~~~p~~~-~l~s~~~d~~i~vwd~~-~~~~~~~-~~~~~~~v~~v~~~~-~~~~l~~~~~dg~v~i~~~~  194 (381)
                      .-+++-..|+...+ .+.+||.|+.+..||.+ .++.+.. .+.|...|.++.-+| .+.++++|+-|..+++|+.+
T Consensus       165 e~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtR  241 (339)
T KOG0280|consen  165 EFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTR  241 (339)
T ss_pred             ceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehh
Confidence            99999999987554 88999999999999999 5566655 456888999999886 47899999999999995533

>KOG4190|consensus

Probab=98.72  E-value=7e-08  Score=86.86  Aligned_cols=150  Identities=17%  Similarity=0.195  Sum_probs=108.0

Q ss_pred             CceEEEEEecCCeEEEecCCC-----ccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEEEec
Q psy4650          45 MIEYKISYQESSRVKAFNPIQ-----VATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE  119 (381)
Q Consensus        45 ~~~~~~s~~~d~~v~i~~~~~-----~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~  119 (381)
                      +.+-+++++.|++|++|.+..     ....+..+++.|+.+|.++.|-.+-.  ++  ++.||-+++||.--+.++....
T Consensus       746 NENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr--~i--~ScD~giHlWDPFigr~Laq~~  821 (1034)
T KOG4190|consen  746 NENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLR--SI--ASCDGGIHLWDPFIGRLLAQME  821 (1034)
T ss_pred             cccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccc--ee--eeccCcceeecccccchhHhhh
Confidence            355789999999999998742     22346788999999999999976432  44  4568999999987776554321


Q ss_pred             ---cC--CCCEEEEEEecCCCEE-EEEeCCCCEEEEeCCCCeeeEEEe-----cCCcceEEEEEcCCCCEEEEEeCCCeE
Q psy4650         120 ---GH--GQNISAVCFHPELPIV-ITGSEDGSVRVWHSGTHRLEISLT-----YGLERVWTISSLKGSNNVAIGYDEGSV  188 (381)
Q Consensus       120 ---~~--~~~v~~~~~~p~~~~l-~s~~~d~~i~vwd~~~~~~~~~~~-----~~~~~v~~v~~~~~~~~l~~~~~dg~v  188 (381)
                         .|  .+.|.|+.- -+...+ +.|+...+|+++|.+.+.....++     +....+.+++..+.|++++.+-.+|++
T Consensus       822 dapk~~a~~~ikcl~n-v~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci  900 (1034)
T KOG4190|consen  822 DAPKEGAGGNIKCLEN-VDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCI  900 (1034)
T ss_pred             cCcccCCCceeEeccc-CcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcE
Confidence               12  223444421 133334 444678999999999887665553     345678999999999999999999999


Q ss_pred             EEEecCCCceEEEecCCCEEE
Q psy4650         189 LLKVGREEPAVSMDVNGCKII  209 (381)
Q Consensus       189 ~i~~~~~~~~~~~d~~~~~~~  209 (381)
                      .+          .|.++|+.+
T Consensus       901 ~~----------LDaR~G~vI  911 (1034)
T KOG4190|consen  901 AI----------LDARNGKVI  911 (1034)
T ss_pred             EE----------EecCCCcee
Confidence            98          666666654

>PRK00178 tolB translocation protein TolB; Provisional

Probab=98.69  E-value=3.2e-06  Score=79.13  Aligned_cols=185  Identities=11%  Similarity=0.026  Sum_probs=110.3

Q ss_pred             eeeeecCCCceEEEEEecC--CeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCC--eEEEEECCCC
Q psy4650          37 VDITTNKDMIEYKISYQES--SRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDR--LVKIWDYQNK  112 (381)
Q Consensus        37 ~~i~~~~~~~~~~~s~~~d--~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~--~v~vwd~~~~  112 (381)
                      ......+++..+.++...+  ..+.+|++.......+   ....+.+....|+|+|.. ++++.+.++  .|.+||+.++
T Consensus       202 ~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l---~~~~g~~~~~~~SpDG~~-la~~~~~~g~~~Iy~~d~~~~  277 (430)
T PRK00178        202 LSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQI---TNFEGLNGAPAWSPDGSK-LAFVLSKDGNPEIYVMDLASR  277 (430)
T ss_pred             eeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEc---cCCCCCcCCeEECCCCCE-EEEEEccCCCceEEEEECCCC
Confidence            3445667765555544333  3688888865333333   333344557899999873 333555555  6888899887


Q ss_pred             eEEEEeccCCCCEEEEEEecCCCEEEEEeC-CC--CEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCC-CeE
Q psy4650         113 TCVQTLEGHGQNISAVCFHPELPIVITGSE-DG--SVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDE-GSV  188 (381)
Q Consensus       113 ~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~-d~--~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d-g~v  188 (381)
                      .... +..+........|+|+|..++..+. ++  .|.++|+.+++.... ...........|+|+|+.++..+.+ +..
T Consensus       278 ~~~~-lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~l-t~~~~~~~~~~~Spdg~~i~~~~~~~~~~  355 (430)
T PRK00178        278 QLSR-VTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERV-TFVGNYNARPRLSADGKTLVMVHRQDGNF  355 (430)
T ss_pred             CeEE-cccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEe-ecCCCCccceEECCCCCEEEEEEccCCce
Confidence            6443 4445555667899999997766553 33  577778877764332 2222233457899999998877643 322


Q ss_pred             EEEecCCCceEEEecCCCEEEEEecCceeecccccCCccccccCCceEEeeehHH
Q psy4650         189 LLKVGREEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSVHV  243 (381)
Q Consensus       189 ~i~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~d  243 (381)
                      .+        ..+|..++....-...     .   ......|+|||+.++.....
T Consensus       356 ~l--------~~~dl~tg~~~~lt~~-----~---~~~~p~~spdg~~i~~~~~~  394 (430)
T PRK00178        356 HV--------AAQDLQRGSVRILTDT-----S---LDESPSVAPNGTMLIYATRQ  394 (430)
T ss_pred             EE--------EEEECCCCCEEEccCC-----C---CCCCceECCCCCEEEEEEec
Confidence            23        3377766653221111     0   11113678999999877654

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=98.69  E-value=1.8e-06  Score=80.56  Aligned_cols=176  Identities=14%  Similarity=0.045  Sum_probs=108.5

Q ss_pred             CeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCC---CeEEEEECCCCeEEEEeccCCCCEEEEEEec
Q psy4650          56 SRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADD---RLVKIWDYQNKTCVQTLEGHGQNISAVCFHP  132 (381)
Q Consensus        56 ~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d---~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~p  132 (381)
                      ..+.++|...   ...+.+..+...+.+..|+|++.  +|+.++.+   ..|.+||+.++.... +..+.+.+.+.+|+|
T Consensus       170 ~~l~~~d~~g---~~~~~l~~~~~~~~~p~~Spdg~--~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~sp  243 (417)
T TIGR02800       170 YELQVADYDG---ANPQTITRSREPILSPAWSPDGQ--KLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSP  243 (417)
T ss_pred             ceEEEEcCCC---CCCEEeecCCCceecccCCCCCC--EEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECC
Confidence            3577777642   22345556777899999999987  56655432   579999998886433 333455667899999


Q ss_pred             CCCEEEE-EeCC--CCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCC-CeEEEEecCCCceEEEecCCCEE
Q psy4650         133 ELPIVIT-GSED--GSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDE-GSVLLKVGREEPAVSMDVNGCKI  208 (381)
Q Consensus       133 ~~~~l~s-~~~d--~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d-g~v~i~~~~~~~~~~~d~~~~~~  208 (381)
                      +|+.++. .+.+  ..|.+||+.++.... +..+........|+|+|+.++..+.. +...+        +.+|..++..
T Consensus       244 Dg~~l~~~~~~~~~~~i~~~d~~~~~~~~-l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~i--------y~~d~~~~~~  314 (417)
T TIGR02800       244 DGSKLAVSLSKDGNPDIYVMDLDGKQLTR-LTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQI--------YMMDADGGEV  314 (417)
T ss_pred             CCCEEEEEECCCCCccEEEEECCCCCEEE-CCCCCCCCCCEEECCCCCEEEEEECCCCCceE--------EEEECCCCCE
Confidence            9986654 4444  358899998775433 33343445567899999988776643 33233        2266655542


Q ss_pred             EEEecCceeecccccCCccccccCCceEEeeehHHH---HHhccCCCc
Q psy4650         209 IWARHSEVQQANLKTMPEVFENITAGVVLTLSVHVT---IKYRLDISD  253 (381)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~d~---~~~~~d~~~  253 (381)
                      .. +...      ........++|||..+++...+.   ..+.+++..
T Consensus       315 ~~-l~~~------~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~  355 (417)
T TIGR02800       315 RR-LTFR------GGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDG  355 (417)
T ss_pred             EE-eecC------CCCccCeEECCCCCEEEEEEccCCceEEEEEeCCC
Confidence            21 1111      01111146789999888877654   345555543

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PTZ00009 heat shock 70 kDa protein; Provisional

Probab=98.68  E-value=4.9e-08  Score=95.25  Aligned_cols=76  Identities=26%  Similarity=0.507  Sum_probs=71.3

Q ss_pred             HHHhhhhhhhhHhhhccccceeeEeeccccCcceEEeecHHHHHHHHHHHHHHhHHHHHHHHHhCCCCcccccccc
Q psy4650         305 GGLLTSFVQPCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIGGLLTSFVQPIEDVLSRSNITHDQINKFT  380 (381)
Q Consensus       305 ~~l~~~~~~~~~~~Ls~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~v~  380 (381)
                      ...+...++.+|+.||....+.+.++.++++.++..+++|++||++++++|.+++.+++++|++|++++++||.|+
T Consensus       262 ~~~L~~~aEkaK~~LS~~~~~~i~i~~~~~~~d~~~~itR~~fe~l~~~l~~~~~~~i~~~L~~a~~~~~~i~~Vi  337 (653)
T PTZ00009        262 LRRLRTQCERAKRTLSSSTQATIEIDSLFEGIDYNVTISRARFEELCGDYFRNTLQPVEKVLKDAGMDKRSVHEVV  337 (653)
T ss_pred             HHHHHHHHHHHHHhCCCCceEEEEEEeccCCceEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCcEEE
Confidence            3456778999999999999999999999999999999999999999999999999999999999999999999986

>KOG3914|consensus

Probab=98.68  E-value=8.6e-08  Score=83.01  Aligned_cols=105  Identities=14%  Similarity=0.288  Sum_probs=80.5

Q ss_pred             EEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEEEe-ccCCCCEEEEE
Q psy4650          51 SYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTL-EGHGQNISAVC  129 (381)
Q Consensus        51 s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~-~~~~~~v~~~~  129 (381)
                      .+++...+.+|...+   .....+-||-..++.++|+||+.  .++++..|..|++-.+..-..+..+ -||+.-|..++
T Consensus       127 kagD~~~~di~s~~~---~~~~~~lGhvSml~dVavS~D~~--~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~is  201 (390)
T KOG3914|consen  127 KAGDVYSFDILSADS---GRCEPILGHVSMLLDVAVSPDDQ--FIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTIS  201 (390)
T ss_pred             ecCCceeeeeecccc---cCcchhhhhhhhhheeeecCCCC--EEEEecCCceEEEEecCcccchhhhccccHhheeeee
Confidence            334444455555432   33445569999999999999886  8999999999999777655444444 67999999999


Q ss_pred             EecCCCEEEEEeCCCCEEEEeCCCCeeeEEEe
Q psy4650         130 FHPELPIVITGSEDGSVRVWHSGTHRLEISLT  161 (381)
Q Consensus       130 ~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~  161 (381)
                      .-++. .|++||.|+++++||+.+|+.+.++.
T Consensus       202 l~~~~-~LlS~sGD~tlr~Wd~~sgk~L~t~d  232 (390)
T KOG3914|consen  202 LTDNY-LLLSGSGDKTLRLWDITSGKLLDTCD  232 (390)
T ss_pred             eccCc-eeeecCCCCcEEEEecccCCcccccc
Confidence            87654 58999999999999999999887664

>KOG1334|consensus

Probab=98.67  E-value=2.7e-07  Score=81.85  Aligned_cols=117  Identities=14%  Similarity=0.142  Sum_probs=91.3

Q ss_pred             eeeecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCC-eE--
Q psy4650          38 DITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNK-TC--  114 (381)
Q Consensus        38 ~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~-~~--  114 (381)
                      .+.++.. +..+++++.|..|.+||... ....+....||...|....|.|....+-+++++.||.|++=.+... .+  
T Consensus       147 tV~FN~~-Gd~l~SgSDD~~vv~WdW~~-~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~  224 (559)
T KOG1334|consen  147 TVHFNQR-GDVLASGSDDLQVVVWDWVS-GSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVEN  224 (559)
T ss_pred             eeeeccc-CceeeccCccceEEeehhhc-cCcccccccccccchhhhhccCCCCCcCceeccccCceeeeeeccccceec
Confidence            3444444 66999999999999999865 3344556679999999999999777678999999999998765433 22  


Q ss_pred             EEEeccCCCCEEEEEEecCCC-EEEEEeCCCCEEEEeCCCCee
Q psy4650         115 VQTLEGHGQNISAVCFHPELP-IVITGSEDGSVRVWHSGTHRL  156 (381)
Q Consensus       115 ~~~~~~~~~~v~~~~~~p~~~-~l~s~~~d~~i~vwd~~~~~~  156 (381)
                      ...+..|.++|+.++..|+.+ .+.++|.|+.+.-+|++.+.+
T Consensus       225 t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~p  267 (559)
T KOG1334|consen  225 TKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVP  267 (559)
T ss_pred             ceecccccCccceeeecCCCCCcccccccccceeeeeeccCCc
Confidence            234456889999999999776 788999999999999886554

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.66  E-value=1e-07  Score=56.04  Aligned_cols=38  Identities=29%  Similarity=0.754  Sum_probs=34.7

Q ss_pred             eeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEE
Q psy4650          69 LILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWD  108 (381)
Q Consensus        69 ~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd  108 (381)
                      .+++++++|.+.|.+++|+|++.  +|++|+.|++|++||
T Consensus         2 ~~~~~~~~h~~~i~~i~~~~~~~--~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTFRGHSSSINSIAWSPDGN--FLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEESSSSSEEEEEEETTSS--EEEEEETTSEEEEEE
T ss_pred             eEEEEEcCCCCcEEEEEEecccc--cceeeCCCCEEEEEC
Confidence            35688999999999999999866  899999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>PTZ00186 heat shock 70 kDa precursor protein; Provisional

Probab=98.65  E-value=8.4e-08  Score=92.99  Aligned_cols=77  Identities=14%  Similarity=0.231  Sum_probs=68.9

Q ss_pred             HHHHhhhhhhhhHhhhccccceeeEeeccccC----cceEEeecHHHHHHHHHHHHHHhHHHHHHHHHhCCCCccccccc
Q psy4650         304 IGGLLTSFVQPCMHVLSTLQSSNVFVESLYDG----LDFHHNVSRARFESLIGGLLTSFVQPIEDVLSRSNITHDQINKF  379 (381)
Q Consensus       304 ~~~l~~~~~~~~~~~Ls~~~~~~~~~~~~~~~----~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~v  379 (381)
                      ....+...++.+|+.||....+.+.++.+...    .++..+++|.+||++++++++|++.+|+++|++|++++++||+|
T Consensus       278 ~~~rL~~~aEkaK~~LS~~~~~~i~i~~i~~~~~g~~~~~~~ItR~efe~l~~~l~~r~~~~v~~~L~~a~~~~~dId~V  357 (657)
T PTZ00186        278 ALQRVREAAEKAKCELSSAMETEVNLPFITANADGAQHIQMHISRSKFEGITQRLIERSIAPCKQCMKDAGVELKEINDV  357 (657)
T ss_pred             HHHHHHHHHHHHHHHhCCCCceEEEEeeeccCCCCCcceEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhCCEE
Confidence            34567788999999999999999999877532    45889999999999999999999999999999999999999998


Q ss_pred             c
Q psy4650         380 T  380 (381)
Q Consensus       380 ~  380 (381)
                      |
T Consensus       358 v  358 (657)
T PTZ00186        358 V  358 (657)
T ss_pred             E
Confidence            7

>KOG0103|consensus

Probab=98.63  E-value=3.8e-08  Score=91.27  Aligned_cols=73  Identities=21%  Similarity=0.287  Sum_probs=69.8

Q ss_pred             HhhhhhhhhHhhhccccceeeEeeccccCcceEEeecHHHHHHHHHHHHHHhHHHHHHHHHhCCCCccccccc
Q psy4650         307 LLTSFVQPCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIGGLLTSFVQPIEDVLSRSNITHDQINKF  379 (381)
Q Consensus       307 l~~~~~~~~~~~Ls~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~v  379 (381)
                      .+...++++|++||.++.++++|+++.+..++.+.++|++||+|+.+++.|...|+.++|++|+|+.+|||.|
T Consensus       265 RL~~~~EKlKK~lSAN~~~plNIEcfM~d~dvs~~i~ReEfEel~~plL~rv~~p~~~~l~d~~l~~edi~~V  337 (727)
T KOG0103|consen  265 RLLAECEKLKKVLSANTELPLNIECFMNDKDVSSKIKREEFEELSAPLLERVEVPLLKALADAKLKVEDIHAV  337 (727)
T ss_pred             HHHHHHHHHHHHhhcCcCCCcchhheeecchhhhhccHHHHHHHHHHHHHhhhHHHHHHHHHhcCccccceeE
Confidence            4677899999999999999999999999999999999999999999999999999999999999999999976

>KOG4547|consensus

Probab=98.60  E-value=6.2e-06  Score=75.12  Aligned_cols=145  Identities=9%  Similarity=0.041  Sum_probs=111.6

Q ss_pred             CCceEEEEEecCCeEEEecCCCccceeeEeec---cccccEEEEEee------e------------CCCccEEEEEcCCC
Q psy4650          44 DMIEYKISYQESSRVKAFNPIQVATLILKTLY---GHEKGVNCVDYY------H------------GGDKPYLISGADDR  102 (381)
Q Consensus        44 ~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~---~h~~~v~~~~~~------~------------~~~~~~l~s~~~d~  102 (381)
                      ....|++....||.+++|+.....  ....+.   .-++..++..|.      |            .++...++-|-..|
T Consensus         3 ~~~~~~A~~~~~g~l~iw~t~~~~--~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g   80 (541)
T KOG4547|consen    3 PALDYFALSTGDGRLRIWDTAKNQ--LQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQG   80 (541)
T ss_pred             chhheEeecCCCCeEEEEEccCce--eeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCc
Confidence            346689999999999999986422  111121   112333333332      2            11123678888899


Q ss_pred             eEEEEECCCCeEEEEec--cCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEE
Q psy4650         103 LVKIWDYQNKTCVQTLE--GHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVA  180 (381)
Q Consensus       103 ~v~vwd~~~~~~~~~~~--~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~  180 (381)
                      .|.+++...++....+.  +|.++|.++.++.+...+.+++.|..+..|+...+.....+......+.+++.+|+|..++
T Consensus        81 ~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~  160 (541)
T KOG4547|consen   81 SVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILL  160 (541)
T ss_pred             cEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEE
Confidence            99999999998766664  6899999999999999999999999999999999999999999999999999999999998


Q ss_pred             EEeCCCeEEEEe
Q psy4650         181 IGYDEGSVLLKV  192 (381)
Q Consensus       181 ~~~~dg~v~i~~  192 (381)
                      +++  +.+++|+
T Consensus       161 ~as--~~ik~~~  170 (541)
T KOG4547|consen  161 TAS--RQIKVLD  170 (541)
T ss_pred             ecc--ceEEEEE
Confidence            886  4677733

>PRK11678 putative chaperone; Provisional

Probab=98.58  E-value=1.1e-07  Score=88.14  Aligned_cols=91  Identities=14%  Similarity=0.057  Sum_probs=79.5

Q ss_pred             HHHHHHHhhhhhhccccceeeEEEecccCCcccccccChHHHHHHHHHHhhhhhhhhHhhhccccceeeEeeccccCcce
Q psy4650         259 AKLRAAAETCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIGGLLTSFVQPCMHVLSTLQSSNVFVESLYDGLDF  338 (381)
Q Consensus       259 ~~l~~~~e~ak~~lS~~~~~~i~~~~l~~g~~~~~~itr~~fe~l~~~l~~~~~~~~~~~Ls~~~~~~~~~~~~~~~~~~  338 (381)
                      .+|..++|++|+.||...++.+.++.+.  .++...++|++|++++.+++.++.++++++|..+.   +.   ++.++++
T Consensus       335 ~~L~~~aE~aK~~LS~~~~a~i~~~~~~--~~~~~~ItR~efe~ii~~~l~ri~~~i~~~L~~a~---~~---~d~VvLv  406 (450)
T PRK11678        335 YRLVRSAEEAKIALSDQAETRASLDFIS--DGLATEISQQGLEEAISQPLARILELVQLALDQAQ---VK---PDVIYLT  406 (450)
T ss_pred             HHHHHHHHHHHHHcCCCCceEEEecccC--CCcceeeCHHHHHHHHHHHHHHHHHHHHHHHHHcC---CC---CCEEEEc
Confidence            4688999999999999999999988654  45789999999999999999999999999998854   32   2456789


Q ss_pred             EEeecHHHHHHHHHHHHHH
Q psy4650         339 HHNVSRARFESLIGGLLTS  357 (381)
Q Consensus       339 ~~~~~~~~~e~~~~~~~~~  357 (381)
                      ||+.++|.+++++++.|+.
T Consensus       407 GGsSriP~V~~~l~~~fg~  425 (450)
T PRK11678        407 GGSARSPLIRAALAQQLPG  425 (450)
T ss_pred             CcccchHHHHHHHHHHCCC
Confidence            9999999999999999964

>KOG1409|consensus

Probab=98.58  E-value=8.1e-07  Score=75.62  Aligned_cols=104  Identities=26%  Similarity=0.516  Sum_probs=85.7

Q ss_pred             EEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCe-EEEEeccCCCCEE
Q psy4650          48 YKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKT-CVQTLEGHGQNIS  126 (381)
Q Consensus        48 ~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~-~~~~~~~~~~~v~  126 (381)
                      +.+.|...|.|.+-.........+.++.+|.+.+.++.|.|...  .+.+|..|..+.+||+-.++ ....+.+|...|.
T Consensus       167 ~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~--~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~  244 (404)
T KOG1409|consen  167 YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQR--LLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQ  244 (404)
T ss_pred             EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCc--EEEeccccCceEEEeccCCcceeeeeccchhhhh
Confidence            55556666666666655556677888999999999999988544  89999999999999997654 4567788999999


Q ss_pred             EEEEecCCCEEEEEeCCCCEEEEeCCC
Q psy4650         127 AVCFHPELPIVITGSEDGSVRVWHSGT  153 (381)
Q Consensus       127 ~~~~~p~~~~l~s~~~d~~i~vwd~~~  153 (381)
                      .+.+.+--+.+.+++.||.|.+||+..
T Consensus       245 ~l~~~~~t~~l~S~~edg~i~~w~mn~  271 (404)
T KOG1409|consen  245 ALSYAQHTRQLISCGEDGGIVVWNMNV  271 (404)
T ss_pred             hhhhhhhheeeeeccCCCeEEEEeccc
Confidence            999988888999999999999999864

>PRK00178 tolB translocation protein TolB; Provisional

Probab=98.57  E-value=5.4e-06  Score=77.60  Aligned_cols=165  Identities=12%  Similarity=0.019  Sum_probs=101.8

Q ss_pred             eEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCC---CeEEEEECCCCeEEEEeccCCCCEEEEEEecC
Q psy4650          57 RVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADD---RLVKIWDYQNKTCVQTLEGHGQNISAVCFHPE  133 (381)
Q Consensus        57 ~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d---~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~p~  133 (381)
                      .+.++|...   ...+.+..+...+.+..|+|+|+  .|+..+.+   ..|.+|++.++.... +....+.+....|+|+
T Consensus       180 ~l~~~d~~g---~~~~~l~~~~~~~~~p~wSpDG~--~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpD  253 (430)
T PRK00178        180 TLQRSDYDG---ARAVTLLQSREPILSPRWSPDGK--RIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPD  253 (430)
T ss_pred             EEEEECCCC---CCceEEecCCCceeeeeECCCCC--EEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCC
Confidence            366667643   22344556778899999999987  56554432   468899998886433 3323344567899999


Q ss_pred             CCEEE-EEeCCC--CEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeC-CCeEEEEecCCCceEEEecCCCEEE
Q psy4650         134 LPIVI-TGSEDG--SVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYD-EGSVLLKVGREEPAVSMDVNGCKII  209 (381)
Q Consensus       134 ~~~l~-s~~~d~--~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~-dg~v~i~~~~~~~~~~~d~~~~~~~  209 (381)
                      |+.++ +...++  .|.+||+.++.... +..+........|+|+|+.++..+. +|...+        +.++..++...
T Consensus       254 G~~la~~~~~~g~~~Iy~~d~~~~~~~~-lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~i--------y~~d~~~g~~~  324 (430)
T PRK00178        254 GSKLAFVLSKDGNPEIYVMDLASRQLSR-VTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQI--------YKVNVNGGRAE  324 (430)
T ss_pred             CCEEEEEEccCCCceEEEEECCCCCeEE-cccCCCCcCCeEECCCCCEEEEEECCCCCceE--------EEEECCCCCEE
Confidence            99776 444444  58888998876543 4444445667889999998776654 333333        23666555422


Q ss_pred             EEecCceeecccccCCccccccCCceEEeeehHH
Q psy4650         210 WARHSEVQQANLKTMPEVFENITAGVVLTLSVHV  243 (381)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~d  243 (381)
                      .-. ..      ........|+|||..+++....
T Consensus       325 ~lt-~~------~~~~~~~~~Spdg~~i~~~~~~  351 (430)
T PRK00178        325 RVT-FV------GNYNARPRLSADGKTLVMVHRQ  351 (430)
T ss_pred             Eee-cC------CCCccceEECCCCCEEEEEEcc
Confidence            111 00      0011113578999998877643

>KOG1409|consensus

Probab=98.56  E-value=2.7e-06  Score=72.55  Aligned_cols=158  Identities=15%  Similarity=0.233  Sum_probs=117.5

Q ss_pred             hhhcceeeeecCCCceEEEEEecCCeEEEecCCCc--cceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEEC
Q psy4650          32 VRETKVDITTNKDMIEYKISYQESSRVKAFNPIQV--ATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDY  109 (381)
Q Consensus        32 ~~~~~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~--~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~  109 (381)
                      +..-+..+..... ...|+.|..+|++.-|...+.  +....+....|..++..+-|+-..+  ++++.+.|..+.--=.
T Consensus        67 mP~~~~~~~y~~e-~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e--~V~s~~~dk~~~~hc~  143 (404)
T KOG1409|consen   67 MPSPCSAMEYVSE-SRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHE--WVLSTGKDKQFAWHCT  143 (404)
T ss_pred             CCCCceEeeeecc-ceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCce--eEEEeccccceEEEee
Confidence            3333334444443 678889999999999877432  3344566678999998888876555  6777777655432111


Q ss_pred             C-----------------------------------------CCeEEEEeccCCCCEEEEEEecCCCEEEEEeCCCCEEE
Q psy4650         110 Q-----------------------------------------NKTCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRV  148 (381)
Q Consensus       110 ~-----------------------------------------~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~v  148 (381)
                      +                                         .-.++..+.+|.+.+.+++|.|....+.+|..|..+.+
T Consensus       144 e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~  223 (404)
T KOG1409|consen  144 ESGNRLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIM  223 (404)
T ss_pred             ccCCcccceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEE
Confidence            1                                         01335567899999999999999999999999999999


Q ss_pred             EeCCCCee-eEEEecCCcceEEEEEcCCCCEEEEEeCCCeEEEEe
Q psy4650         149 WHSGTHRL-EISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKV  192 (381)
Q Consensus       149 wd~~~~~~-~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~  192 (381)
                      ||+...+. ...+.+|...|..+++-+.-+.+.+++.||.+-+|.
T Consensus       224 wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~  268 (404)
T KOG1409|consen  224 WDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWN  268 (404)
T ss_pred             EeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEe
Confidence            99987654 345678999999999988889999999999999955

>KOG2315|consensus

Probab=98.55  E-value=1e-05  Score=73.33  Aligned_cols=108  Identities=14%  Similarity=0.152  Sum_probs=84.3

Q ss_pred             cccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEEEeccCCCCEEEEEEecCCCEEEEEeC---CCCEEEEeCCCC
Q psy4650          78 EKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPIVITGSE---DGSVRVWHSGTH  154 (381)
Q Consensus        78 ~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~---d~~i~vwd~~~~  154 (381)
                      .++|+++.|+|++..-.++-|-+-..+.++|++ +.++..+.  +++=.++-|+|.|.+++-+|.   -|.+-|||+.+.
T Consensus       270 ~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~--egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~  346 (566)
T KOG2315|consen  270 EGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFP--EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNR  346 (566)
T ss_pred             CCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCC--CCCccceEECCCCCEEEEeecCCCCCceEEEeccch
Confidence            689999999999886445667778899999986 45555554  456689999999997776654   688999999998


Q ss_pred             eeeEEEecCCcceEEEEEcCCCCEEEEEeCCCeEEE
Q psy4650         155 RLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLL  190 (381)
Q Consensus       155 ~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i  190 (381)
                      +.+..+....  -+-+.|+|+|.++.++.....+++
T Consensus       347 K~i~~~~a~~--tt~~eW~PdGe~flTATTaPRlrv  380 (566)
T KOG2315|consen  347 KLIAKFKAAN--TTVFEWSPDGEYFLTATTAPRLRV  380 (566)
T ss_pred             hhccccccCC--ceEEEEcCCCcEEEEEeccccEEe
Confidence            8887776443  345789999999999987655555

>PRK04792 tolB translocation protein TolB; Provisional

Probab=98.55  E-value=1e-05  Score=75.88  Aligned_cols=165  Identities=12%  Similarity=0.007  Sum_probs=100.1

Q ss_pred             eEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEc-CC--CeEEEEECCCCeEEEEeccCCCCEEEEEEecC
Q psy4650          57 RVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGA-DD--RLVKIWDYQNKTCVQTLEGHGQNISAVCFHPE  133 (381)
Q Consensus        57 ~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~-~d--~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~p~  133 (381)
                      .+.++|.....   .+.+..+...+.+..|+|+|.  .|+..+ .+  ..|.+||+.+++... +....+.....+|+|+
T Consensus       199 ~l~i~d~dG~~---~~~l~~~~~~~~~p~wSPDG~--~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPD  272 (448)
T PRK04792        199 QLMIADYDGYN---EQMLLRSPEPLMSPAWSPDGR--KLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPD  272 (448)
T ss_pred             EEEEEeCCCCC---ceEeecCCCcccCceECCCCC--EEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCC
Confidence            55666764322   234455677889999999988  455443 23  358888998876432 2222233457899999


Q ss_pred             CCEEEE-EeCCCC--EEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeC-CCeEEEEecCCCceEEEecCCCEEE
Q psy4650         134 LPIVIT-GSEDGS--VRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYD-EGSVLLKVGREEPAVSMDVNGCKII  209 (381)
Q Consensus       134 ~~~l~s-~~~d~~--i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~-dg~v~i~~~~~~~~~~~d~~~~~~~  209 (381)
                      |+.++. .+.++.  |.+||+.+++.. .+..+........|+|+|+.++..+. +|...+        ..+|..++...
T Consensus       273 G~~La~~~~~~g~~~Iy~~dl~tg~~~-~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~I--------y~~dl~~g~~~  343 (448)
T PRK04792        273 GKKLALVLSKDGQPEIYVVDIATKALT-RITRHRAIDTEPSWHPDGKSLIFTSERGGKPQI--------YRVNLASGKVS  343 (448)
T ss_pred             CCEEEEEEeCCCCeEEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceE--------EEEECCCCCEE
Confidence            997764 455665  777888877643 33334445677899999998877654 344444        33676655432


Q ss_pred             EEecCceeecccccCCccccccCCceEEeeehHH
Q psy4650         210 WARHSEVQQANLKTMPEVFENITAGVVLTLSVHV  243 (381)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~d  243 (381)
                      .-. .+.      .......|+|||+.+++....
T Consensus       344 ~Lt-~~g------~~~~~~~~SpDG~~l~~~~~~  370 (448)
T PRK04792        344 RLT-FEG------EQNLGGSITPDGRSMIMVNRT  370 (448)
T ss_pred             EEe-cCC------CCCcCeeECCCCCEEEEEEec
Confidence            111 110      000113578999988876543

>KOG1275|consensus

Probab=98.54  E-value=3.1e-07  Score=87.36  Aligned_cols=148  Identities=18%  Similarity=0.182  Sum_probs=114.5

Q ss_pred             CCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcC---------CCeEEEEECCCCeE
Q psy4650          44 DMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGAD---------DRLVKIWDYQNKTC  114 (381)
Q Consensus        44 ~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~---------d~~v~vwd~~~~~~  114 (381)
                      .++.++.+|...|+|.+-|+.  +...++++..|++.|.++...  |+  .|++||.         |..|+|||++..+.
T Consensus       185 ~Nnr~lf~G~t~G~V~LrD~~--s~~~iht~~aHs~siSDfDv~--GN--lLitCG~S~R~~~l~~D~FvkVYDLRmmra  258 (1118)
T KOG1275|consen  185 YNNRNLFCGDTRGTVFLRDPN--SFETIHTFDAHSGSISDFDVQ--GN--LLITCGYSMRRYNLAMDPFVKVYDLRMMRA  258 (1118)
T ss_pred             ecCcEEEeecccceEEeecCC--cCceeeeeeccccceeeeecc--CC--eEEEeecccccccccccchhhhhhhhhhhc
Confidence            336789999999999999997  466789999999999998773  34  7888865         67789999988777


Q ss_pred             EEEeccCCCCEEEEEEecCCC-EEEEEeCCCCEEEEe---CCCCee-eEEEecCCcceEEEEEcCCCCEEEEEeCCCeEE
Q psy4650         115 VQTLEGHGQNISAVCFHPELP-IVITGSEDGSVRVWH---SGTHRL-EISLTYGLERVWTISSLKGSNNVAIGYDEGSVL  189 (381)
Q Consensus       115 ~~~~~~~~~~v~~~~~~p~~~-~l~s~~~d~~i~vwd---~~~~~~-~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~  189 (381)
                      +..+.-+.++ .-+.|+|.-. .++.++..|...+-|   +..... ...+..-...+.+++++++|..+|.|..+|.+.
T Consensus       259 l~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~  337 (1118)
T KOG1275|consen  259 LSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVN  337 (1118)
T ss_pred             cCCcccccCc-hhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEe
Confidence            6666666555 6788899765 777888889999998   433322 222333345589999999999999999999999


Q ss_pred             EEecCCCce
Q psy4650         190 LKVGREEPA  198 (381)
Q Consensus       190 i~~~~~~~~  198 (381)
                      +|.....+.
T Consensus       338 ~wa~~~~P~  346 (1118)
T KOG1275|consen  338 LWADRPQPQ  346 (1118)
T ss_pred             eecCCCCCc
Confidence            998655443

>KOG1354|consensus

Probab=98.54  E-value=1.2e-06  Score=74.59  Aligned_cols=207  Identities=11%  Similarity=0.185  Sum_probs=134.5

Q ss_pred             ceeeeecCCCceEEEEEecCCeEEEecCCCccc---eeeEeecccc------------ccEEEEEeeeCCCccEEEEEcC
Q psy4650          36 KVDITTNKDMIEYKISYQESSRVKAFNPIQVAT---LILKTLYGHE------------KGVNCVDYYHGGDKPYLISGAD  100 (381)
Q Consensus        36 ~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~---~~~~~l~~h~------------~~v~~~~~~~~~~~~~l~s~~~  100 (381)
                      .-+|.+... +++|++|..+|.|.+|.-.+...   ......+.|.            ..|..+.|.+.++...+.....
T Consensus        28 is~vef~~~-Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlstN  106 (433)
T KOG1354|consen   28 ISAVEFDHY-GERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLSTN  106 (433)
T ss_pred             eeeEEeecc-cceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEecC
Confidence            445666654 77999999999999997654221   2334455554            4578889999888778888899


Q ss_pred             CCeEEEEECCCC-----------------------------------eEEEEe-ccCCCCEEEEEEecCCCEEEEEeCCC
Q psy4650         101 DRLVKIWDYQNK-----------------------------------TCVQTL-EGHGQNISAVCFHPELPIVITGSEDG  144 (381)
Q Consensus       101 d~~v~vwd~~~~-----------------------------------~~~~~~-~~~~~~v~~~~~~p~~~~l~s~~~d~  144 (381)
                      |+++++|.+...                                   .+.+.+ .+|+--|.+++++.|+..++++. |=
T Consensus       107 dktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSAD-dL  185 (433)
T KOG1354|consen  107 DKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSAD-DL  185 (433)
T ss_pred             CcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeecc-ce
Confidence            999999987531                                   112222 35777789999999999888764 66


Q ss_pred             CEEEEeCCCCeeeEE---Eec-----CCcceEEEEEcCC-CCEEEEEeCCCeEEEEecCCCceEEEecCCCEE------E
Q psy4650         145 SVRVWHSGTHRLEIS---LTY-----GLERVWTISSLKG-SNNVAIGYDEGSVLLKVGREEPAVSMDVNGCKI------I  209 (381)
Q Consensus       145 ~i~vwd~~~~~~~~~---~~~-----~~~~v~~v~~~~~-~~~l~~~~~dg~v~i~~~~~~~~~~~d~~~~~~------~  209 (381)
                      .|-+|++.--..-..   ++.     -...+++..|+|. .+.++..+..|.+++          .|.+...+      +
T Consensus       186 RINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrL----------cDmR~~aLCd~hsKl  255 (433)
T KOG1354|consen  186 RINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRL----------CDMRQSALCDAHSKL  255 (433)
T ss_pred             eeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEE----------eechhhhhhcchhhh
Confidence            799999863222111   221     2345788999996 578888999999999          44432111      1


Q ss_pred             EEecCceee-----cccccCCccccccCCceEEeeehHHHHHhccCCCcChh
Q psy4650         210 WARHSEVQQ-----ANLKTMPEVFENITAGVVLTLSVHVTIKYRLDISDSHR  256 (381)
Q Consensus       210 ~~~~~~~~~-----~~~~~~~~~~~~~~dg~~l~~~~~d~~~~~~d~~~~~~  256 (381)
                      +........     .-+.+++ .+.|++.|+++.+... .+...||+..+.+
T Consensus       256 fEepedp~~rsffseiIsSIS-DvKFs~sGryilsRDy-ltvk~wD~nme~~  305 (433)
T KOG1354|consen  256 FEEPEDPSSRSFFSEIISSIS-DVKFSHSGRYILSRDY-LTVKLWDLNMEAK  305 (433)
T ss_pred             hccccCCcchhhHHHHhhhhh-ceEEccCCcEEEEecc-ceeEEEeccccCC
Confidence            111100000     1112222 2688999999887653 4677899855443

>KOG4497|consensus

Probab=98.53  E-value=6.7e-06  Score=69.80  Aligned_cols=169  Identities=12%  Similarity=0.149  Sum_probs=107.8

Q ss_pred             cccccCCChhhHHHHhhhcc--eeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccE
Q psy4650          17 RALNTELTETDIETIVRETK--VDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPY   94 (381)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~   94 (381)
                      |+.-|+...-++....--+.  .-+...-+.-.++.....++.|.+|++.+..  -.-.+.....++.+++|||+|.. .
T Consensus        30 rlviRd~~tlq~~qlf~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpe--w~ckIdeg~agls~~~WSPdgrh-i  106 (447)
T KOG4497|consen   30 RLVIRDSETLQLHQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPE--WYCKIDEGQAGLSSISWSPDGRH-I  106 (447)
T ss_pred             EEEEeccchhhHHHHHHHHHHhhheeeeccceeeeeeeeccceEEEEEeecce--eEEEeccCCCcceeeeECCCcce-E
Confidence            55555555554443332211  1133444555567777888899999997533  23455666788999999999863 7


Q ss_pred             EEEEcCCCeEEEEECCCCeEEEEeccCCCCEEEEEEecCCCEEEEEeCC-------------------------------
Q psy4650          95 LISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPIVITGSED-------------------------------  143 (381)
Q Consensus        95 l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d-------------------------------  143 (381)
                      |.+...|-.|.+|.+.+.+... ++-....+..++|+|+|++.+.++.-                               
T Consensus       107 L~tseF~lriTVWSL~t~~~~~-~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~Dltgie  185 (447)
T KOG4497|consen  107 LLTSEFDLRITVWSLNTQKGYL-LPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIE  185 (447)
T ss_pred             eeeecceeEEEEEEeccceeEE-ecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCce
Confidence            7888899999999998765432 22233455777888888766554321                               


Q ss_pred             -----CCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCCCeEEE
Q psy4650         144 -----GSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLL  190 (381)
Q Consensus       144 -----~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i  190 (381)
                           ..+.+||---...+..+. -.-.+..+.|+|.+++++.|+.|+.+++
T Consensus       186 WsPdg~~laVwd~~Leykv~aYe-~~lG~k~v~wsP~~qflavGsyD~~lrv  236 (447)
T KOG4497|consen  186 WSPDGNWLAVWDNVLEYKVYAYE-RGLGLKFVEWSPCNQFLAVGSYDQMLRV  236 (447)
T ss_pred             ECCCCcEEEEecchhhheeeeee-eccceeEEEeccccceEEeeccchhhhh
Confidence                 122333321111111111 1246788999999999999999999988

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.52  E-value=2.5e-05  Score=80.26  Aligned_cols=205  Identities=12%  Similarity=0.077  Sum_probs=123.5

Q ss_pred             hcceeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeeccc-----------------cccEEEEEeeeCCCccEEE
Q psy4650          34 ETKVDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGH-----------------EKGVNCVDYYHGGDKPYLI   96 (381)
Q Consensus        34 ~~~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h-----------------~~~v~~~~~~~~~~~~~l~   96 (381)
                      ..|+.+...+++..+.++-..++.|+.+|+..   ..+.++.+-                 -..-.+++++|++. .+++
T Consensus       624 ~~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~---~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g-~LyV  699 (1057)
T PLN02919        624 NRPQGLAYNAKKNLLYVADTENHALREIDFVN---ETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNE-KVYI  699 (1057)
T ss_pred             CCCcEEEEeCCCCEEEEEeCCCceEEEEecCC---CEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCC-eEEE
Confidence            44677777766555555556667899998753   223333210                 11235789998544 2677


Q ss_pred             EEcCCCeEEEEECCCCeEEEEecc---------C------CCCEEEEEEecCCCE-EEEEeCCCCEEEEeCCCCeeeEEE
Q psy4650          97 SGADDRLVKIWDYQNKTCVQTLEG---------H------GQNISAVCFHPELPI-VITGSEDGSVRVWHSGTHRLEISL  160 (381)
Q Consensus        97 s~~~d~~v~vwd~~~~~~~~~~~~---------~------~~~v~~~~~~p~~~~-l~s~~~d~~i~vwd~~~~~~~~~~  160 (381)
                      +.+.++.|++||..++... .+.+         +      -.....++++|++.. .++-+.++.|++||+.++......
T Consensus       700 ad~~~~~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~  778 (1057)
T PLN02919        700 AMAGQHQIWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLA  778 (1057)
T ss_pred             EECCCCeEEEEECCCCeEE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEE
Confidence            8888999999999877532 2211         1      123457999999984 455566899999999876532111


Q ss_pred             ec---------------------CCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCceEEEecCCCEEEEEecCcee--
Q psy4650         161 TY---------------------GLERVWTISSLKGSNNVAIGYDEGSVLLKVGREEPAVSMDVNGCKIIWARHSEVQ--  217 (381)
Q Consensus       161 ~~---------------------~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~~~~~~~~~~d~~~~~~~~~~~~~~~--  217 (381)
                      .+                     .-.....++++++|..+++.+.++.|++          ||..++...........  
T Consensus       779 gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrv----------iD~~tg~v~tiaG~G~~G~  848 (1057)
T PLN02919        779 GGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKK----------LDPATKRVTTLAGTGKAGF  848 (1057)
T ss_pred             ecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEE----------EECCCCeEEEEeccCCcCC
Confidence            00                     0012356777888777777777777777          66665554432211100  


Q ss_pred             -----ecccccCCccccccCCceEEeeehHHHHHhccCCCc
Q psy4650         218 -----QANLKTMPEVFENITAGVVLTLSVHVTIKYRLDISD  253 (381)
Q Consensus       218 -----~~~~~~~~~~~~~~~dg~~l~~~~~d~~~~~~d~~~  253 (381)
                           .......+..++++++|..++....++++..|++..
T Consensus       849 ~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~  889 (1057)
T PLN02919        849 KDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNK  889 (1057)
T ss_pred             CCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCC
Confidence                 001111233357778898777777777777777654

>KOG1334|consensus

Probab=98.51  E-value=1.6e-07  Score=83.17  Aligned_cols=156  Identities=14%  Similarity=0.195  Sum_probs=118.9

Q ss_pred             ceeeeecCCCceEEEEEecCCeEEEecCCCccce----eeEeeccc------cccEEEEEeeeCCCccEEEEEcCCCeEE
Q psy4650          36 KVDITTNKDMIEYKISYQESSRVKAFNPIQVATL----ILKTLYGH------EKGVNCVDYYHGGDKPYLISGADDRLVK  105 (381)
Q Consensus        36 ~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~----~~~~l~~h------~~~v~~~~~~~~~~~~~l~s~~~d~~v~  105 (381)
                      -++|...|.+...++.++.|..+++||.......    ++.++..|      .-.|+|++|+.++..  +.++-.|-.|.
T Consensus       284 L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sE--lLaSYnDe~IY  361 (559)
T KOG1334|consen  284 LYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSE--LLASYNDEDIY  361 (559)
T ss_pred             eeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccc--eeeeecccceE
Confidence            3677788888889999999999999997532211    22222211      235899999987773  66667788888


Q ss_pred             EEECCC--C----------eE-EEEeccCCC--CEEEEEE-ecCCCEEEEEeCCCCEEEEeCCCCeeeEEEecCCcceEE
Q psy4650         106 IWDYQN--K----------TC-VQTLEGHGQ--NISAVCF-HPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWT  169 (381)
Q Consensus       106 vwd~~~--~----------~~-~~~~~~~~~--~v~~~~~-~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~  169 (381)
                      ++.-.-  |          .. .+.++||..  .|..+.| -|...++++|+.-|.|-||+-.+++.+.-+.+....|+|
T Consensus       362 LF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNC  441 (559)
T KOG1334|consen  362 LFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNC  441 (559)
T ss_pred             EeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEec
Confidence            884322  2          11 234889964  4666664 677789999999999999999999999999988889999


Q ss_pred             EEEcCCCCEEEEEeCCCeEEEEec
Q psy4650         170 ISSLKGSNNVAIGYDEGSVLLKVG  193 (381)
Q Consensus       170 v~~~~~~~~l~~~~~dg~v~i~~~  193 (381)
                      +.-+|--.+||+++-|..|+||..
T Consensus       442 LEpHP~~PvLAsSGid~DVKIWTP  465 (559)
T KOG1334|consen  442 LEPHPHLPVLASSGIDHDVKIWTP  465 (559)
T ss_pred             cCCCCCCchhhccCCccceeeecC
Confidence            999999999999999999999543

>PRK01029 tolB translocation protein TolB; Provisional

Probab=98.51  E-value=1.2e-05  Score=74.71  Aligned_cols=185  Identities=12%  Similarity=-0.022  Sum_probs=102.3

Q ss_pred             eeecCCCce--EEEEEecCC--eEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcC----CCeEEEEECC
Q psy4650          39 ITTNKDMIE--YKISYQESS--RVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGAD----DRLVKIWDYQ  110 (381)
Q Consensus        39 i~~~~~~~~--~~~s~~~d~--~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~----d~~v~vwd~~  110 (381)
                      -.+.|++..  +.+....+|  .|.+.++.......+..+.+   ......|+|||.. ++.+...    +-.+..|++.
T Consensus       190 P~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g---~~~~p~wSPDG~~-Laf~s~~~g~~di~~~~~~~~  265 (428)
T PRK01029        190 PTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQG---NQLMPTFSPRKKL-LAFISDRYGNPDLFIQSFSLE  265 (428)
T ss_pred             ceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCC---CccceEECCCCCE-EEEEECCCCCcceeEEEeecc
Confidence            345666543  433444444  46666765544444444443   4456899999983 3333322    3344557766


Q ss_pred             CC---eEEEEeccCCCCEEEEEEecCCCEEEEEe-CCCCEEEE--eCCC-CeeeEEEecCCcceEEEEEcCCCCEEEEEe
Q psy4650         111 NK---TCVQTLEGHGQNISAVCFHPELPIVITGS-EDGSVRVW--HSGT-HRLEISLTYGLERVWTISSLKGSNNVAIGY  183 (381)
Q Consensus       111 ~~---~~~~~~~~~~~~v~~~~~~p~~~~l~s~~-~d~~i~vw--d~~~-~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~  183 (381)
                      .+   .......++.+.....+|+|+|+.++..+ .++...+|  ++.. +.....+......+....|+|+|+.++..+
T Consensus       266 ~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~  345 (428)
T PRK01029        266 TGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCS  345 (428)
T ss_pred             cCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEE
Confidence            52   33333333333446789999999777665 46655555  4432 222334444445667889999999888765


Q ss_pred             CC-CeEEEEecCCCceEEEecCCCEEEEEecCceeecccccCCccccccCCceEEeeehH
Q psy4650         184 DE-GSVLLKVGREEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSVH  242 (381)
Q Consensus       184 ~d-g~v~i~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~  242 (381)
                      .+ |...        +..||..++....-....       .......|+|||+.+++...
T Consensus       346 ~~~g~~~--------I~v~dl~~g~~~~Lt~~~-------~~~~~p~wSpDG~~L~f~~~  390 (428)
T PRK01029        346 VIKGVRQ--------ICVYDLATGRDYQLTTSP-------ENKESPSWAIDSLHLVYSAG  390 (428)
T ss_pred             cCCCCcE--------EEEEECCCCCeEEccCCC-------CCccceEECCCCCEEEEEEC
Confidence            43 3222        233788776543221110       01112467899988876543

>KOG2041|consensus

Probab=98.50  E-value=2.5e-07  Score=85.83  Aligned_cols=169  Identities=20%  Similarity=0.245  Sum_probs=124.2

Q ss_pred             cccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCe---------------EEEEeccCCCCEEEEEEecCCCEEEEEeC
Q psy4650          78 EKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKT---------------CVQTLEGHGQNISAVCFHPELPIVITGSE  142 (381)
Q Consensus        78 ~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~---------------~~~~~~~~~~~v~~~~~~p~~~~l~s~~~  142 (381)
                      .....|+.|+....  ++++|+.||.+++..+.+..               .-+++.||.+.|.-+.|+...+.|.++..
T Consensus        14 nvkL~c~~WNke~g--yIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt   91 (1189)
T KOG2041|consen   14 NVKLHCAEWNKESG--YIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDT   91 (1189)
T ss_pred             CceEEEEEEcccCC--eEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCC
Confidence            35678999987554  99999999999998775421               12467899999999999999999999999


Q ss_pred             CCCEEEEeCCCCeeeEEE--ecCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCceEEEecCCCEEEEEecCceeecc
Q psy4650         143 DGSVRVWHSGTHRLEISL--TYGLERVWTISSLKGSNNVAIGYDEGSVLLKVGREEPAVSMDVNGCKIIWARHSEVQQAN  220 (381)
Q Consensus       143 d~~i~vwd~~~~~~~~~~--~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  220 (381)
                      +|.|.+|-+-.|.....+  ....+.|.+++|..+|..+.....||.+.+          -.. .|..+|...-...   
T Consensus        92 ~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIV----------Gsv-dGNRIwgKeLkg~---  157 (1189)
T KOG2041|consen   92 SGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIV----------GSV-DGNRIWGKELKGQ---  157 (1189)
T ss_pred             CceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEE----------Eee-ccceecchhcchh---
Confidence            999999999887764433  234567899999999999999999999998          333 3455676433221   


Q ss_pred             cccCCccccccCCceEEeeehHHHHHhccCCCcChhHHHHHHHHHhh
Q psy4650         221 LKTMPEVFENITAGVVLTLSVHVTIKYRLDISDSHRSVAKLRAAAET  267 (381)
Q Consensus       221 ~~~~~~~~~~~~dg~~l~~~~~d~~~~~~d~~~~~~~~~~l~~~~e~  267 (381)
                      +.++   +.|++|.+.+..+...+..+.+|...+  .+.++...|+.
T Consensus       158 ~l~h---v~ws~D~~~~Lf~~ange~hlydnqgn--F~~Kl~~~c~V  199 (1189)
T KOG2041|consen  158 LLAH---VLWSEDLEQALFKKANGETHLYDNQGN--FERKLEKDCEV  199 (1189)
T ss_pred             eccc---eeecccHHHHHhhhcCCcEEEeccccc--HHHhhhhceEE
Confidence            1111   356788888777777777777665433  45566655553

>KOG0309|consensus

Probab=98.48  E-value=4.2e-07  Score=84.63  Aligned_cols=152  Identities=16%  Similarity=0.175  Sum_probs=114.2

Q ss_pred             eeecCCCceEEEEEecCCeEEEecCCCccce-eeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCe-EEE
Q psy4650          39 ITTNKDMIEYKISYQESSRVKAFNPIQVATL-ILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKT-CVQ  116 (381)
Q Consensus        39 i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~-~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~-~~~  116 (381)
                      +..++.....+++.+.. .-.+|++...+.+ +-..+.||+..|+.+.|+|..- ..+++++.|..|..||+++.. ++.
T Consensus        75 ws~h~a~~~wiVsts~q-kaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~p-dVlatcsvdt~vh~wd~rSp~~p~y  152 (1081)
T KOG0309|consen   75 WSPHPAKPYWIVSTSNQ-KAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHP-DVLATCSVDTYVHAWDMRSPHRPFY  152 (1081)
T ss_pred             cccCCCCceeEEecCcc-hhhhhhhhcCCccceEEEEecCccceeccccCCCCC-cceeeccccccceeeeccCCCccee
Confidence            33444445566665554 4458887543333 3445789999999999988544 489999999999999998864 455


Q ss_pred             EeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCC-eeeEEEecCCcceEEEEEcCC-CCEEEEEeCCCeEEEEe
Q psy4650         117 TLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTH-RLEISLTYGLERVWTISSLKG-SNNVAIGYDEGSVLLKV  192 (381)
Q Consensus       117 ~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~-~~~~~~~~~~~~v~~v~~~~~-~~~l~~~~~dg~v~i~~  192 (381)
                      .+..-......+.|+...+.+.+.+..+.+.+||.+.| .++.++++|...|..+.|..- ...+.+++.||++++|+
T Consensus       153 s~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~  230 (1081)
T KOG0309|consen  153 STSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWD  230 (1081)
T ss_pred             eeecccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeec
Confidence            55444456689999998777777778889999999854 578888888888888888753 34677888999999976

>PLN03184 chloroplast Hsp70; Provisional

Probab=98.48  E-value=3.7e-07  Score=89.24  Aligned_cols=75  Identities=21%  Similarity=0.341  Sum_probs=67.5

Q ss_pred             HHhhhhhhhhHhhhccccceeeEeecccc----CcceEEeecHHHHHHHHHHHHHHhHHHHHHHHHhCCCCcccccccc
Q psy4650         306 GLLTSFVQPCMHVLSTLQSSNVFVESLYD----GLDFHHNVSRARFESLIGGLLTSFVQPIEDVLSRSNITHDQINKFT  380 (381)
Q Consensus       306 ~l~~~~~~~~~~~Ls~~~~~~~~~~~~~~----~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~v~  380 (381)
                      ..+...++.+|+.||....+.+.++.+..    ..++...++|++||+++++++++++.+|+++|++|++++++||.|+
T Consensus       292 ~rL~~~aEkaK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itR~~fe~l~~~l~~r~~~~i~~~L~~a~~~~~dId~Vi  370 (673)
T PLN03184        292 QRLTEAAEKAKIELSSLTQTSISLPFITATADGPKHIDTTLTRAKFEELCSDLLDRCKTPVENALRDAKLSFKDIDEVI  370 (673)
T ss_pred             HHHHHHHHHHHHhcCCCCcceEEEEeeeccCCCCceEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHccEEE
Confidence            34677899999999999999999887653    3578899999999999999999999999999999999999999986

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.46  E-value=3e-05  Score=79.71  Aligned_cols=154  Identities=10%  Similarity=0.047  Sum_probs=105.7

Q ss_pred             hcceeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeec---------cc------cccEEEEEeeeCCCccEEEEE
Q psy4650          34 ETKVDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLY---------GH------EKGVNCVDYYHGGDKPYLISG   98 (381)
Q Consensus        34 ~~~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~---------~h------~~~v~~~~~~~~~~~~~l~s~   98 (381)
                      ..|+.+..+++.+.+.++.+.++.|++|++....   +..+.         ++      -.....++++|++.. ++++-
T Consensus       683 n~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~---v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~-LYVAD  758 (1057)
T PLN02919        683 NSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGV---TRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKE-LYIAD  758 (1057)
T ss_pred             CCCeEEEEecCCCeEEEEECCCCeEEEEECCCCe---EEEEecCCccccCCCCccccccccCccEEEEeCCCCE-EEEEE
Confidence            5677888887666777888888999999985422   11111         11      123467899998763 55677


Q ss_pred             cCCCeEEEEECCCCeEEEEecc-------------C--------CCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeee
Q psy4650          99 ADDRLVKIWDYQNKTCVQTLEG-------------H--------GQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLE  157 (381)
Q Consensus        99 ~~d~~v~vwd~~~~~~~~~~~~-------------~--------~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~  157 (381)
                      +.++.|++||..++.......+             +        -..-..++++++|..+++-..++.|++||..++...
T Consensus       759 s~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~  838 (1057)
T PLN02919        759 SESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVT  838 (1057)
T ss_pred             CCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEE
Confidence            7889999999987653211100             0        012358899999998888888999999999887654


Q ss_pred             EEEec-------------CCcceEEEEEcCCCCEEEEEeCCCeEEEE
Q psy4650         158 ISLTY-------------GLERVWTISSLKGSNNVAIGYDEGSVLLK  191 (381)
Q Consensus       158 ~~~~~-------------~~~~v~~v~~~~~~~~l~~~~~dg~v~i~  191 (381)
                      .....             .-.....++++++|+.+++.+.++.|++|
T Consensus       839 tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvi  885 (1057)
T PLN02919        839 TLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYL  885 (1057)
T ss_pred             EEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEE
Confidence            32211             11246788899999888888888888883

>PRK13410 molecular chaperone DnaK; Provisional

Probab=98.46  E-value=4.9e-07  Score=88.11  Aligned_cols=75  Identities=20%  Similarity=0.355  Sum_probs=67.7

Q ss_pred             HHhhhhhhhhHhhhccccceeeEeecccc----CcceEEeecHHHHHHHHHHHHHHhHHHHHHHHHhCCCCcccccccc
Q psy4650         306 GLLTSFVQPCMHVLSTLQSSNVFVESLYD----GLDFHHNVSRARFESLIGGLLTSFVQPIEDVLSRSNITHDQINKFT  380 (381)
Q Consensus       306 ~l~~~~~~~~~~~Ls~~~~~~~~~~~~~~----~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~v~  380 (381)
                      ..+...++.+|+.||....+.+.++.+..    ..++...++|.+||++|++++.+++.+|+++|++|++++++|++|+
T Consensus       255 ~rL~~~aEkaK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itR~~FE~l~~~l~~r~~~~i~~~L~~ag~~~~dId~Vv  333 (668)
T PRK13410        255 QRLTEAAEKAKIELSGVSVTDISLPFITATEDGPKHIETRLDRKQFESLCGDLLDRLLRPVKRALKDAGLSPEDIDEVV  333 (668)
T ss_pred             HHHHHHHHHHHHhcCCCCceEEEEeeeecCCCCCeeEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhCcEEE
Confidence            35667899999999999989999988754    3478899999999999999999999999999999999999999986

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=98.45  E-value=0.00017  Score=65.36  Aligned_cols=205  Identities=13%  Similarity=0.125  Sum_probs=119.4

Q ss_pred             hhcceeeeecCCCceEEEEEecCCeEEEecCCCccce--eeEee--c--------cccccEEEEEeeeCCCccEEEEEcC
Q psy4650          33 RETKVDITTNKDMIEYKISYQESSRVKAFNPIQVATL--ILKTL--Y--------GHEKGVNCVDYYHGGDKPYLISGAD  100 (381)
Q Consensus        33 ~~~~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~--~~~~l--~--------~h~~~v~~~~~~~~~~~~~l~s~~~  100 (381)
                      -..|+-+...+++..++++...+|.+.+|++......  ....+  .        ......+++.++|++.. ++++.-.
T Consensus        86 g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~-v~v~dlG  164 (345)
T PF10282_consen   86 GSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRF-VYVPDLG  164 (345)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSE-EEEEETT
T ss_pred             CCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCE-EEEEecC
Confidence            3566778888876655566567999999998653111  11111  1        12245789999998873 4444555


Q ss_pred             CCeEEEEECCCCe--E--EEEec-cCCCCEEEEEEecCCCEEEEEe-CCCCEEEEeCC--CCee--eEEEec------CC
Q psy4650         101 DRLVKIWDYQNKT--C--VQTLE-GHGQNISAVCFHPELPIVITGS-EDGSVRVWHSG--THRL--EISLTY------GL  164 (381)
Q Consensus       101 d~~v~vwd~~~~~--~--~~~~~-~~~~~v~~~~~~p~~~~l~s~~-~d~~i~vwd~~--~~~~--~~~~~~------~~  164 (381)
                      ...|.+|++....  .  ...+. .....-..+.|+|+++++.... .++.|.++++.  ++..  ......      ..
T Consensus       165 ~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~  244 (345)
T PF10282_consen  165 ADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGE  244 (345)
T ss_dssp             TTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSS
T ss_pred             CCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeecccccccc
Confidence            6689999887654  2  22232 2334568999999999776554 48889999988  5543  222221      11


Q ss_pred             cceEEEEEcCCCCEEEEEe-CCCeEEEEecCCCceEEEecCCCEEEEEecCceeecccccCCccccccCCceEEeeehHH
Q psy4650         165 ERVWTISSLKGSNNVAIGY-DEGSVLLKVGREEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSVHV  243 (381)
Q Consensus       165 ~~v~~v~~~~~~~~l~~~~-~dg~v~i~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~d  243 (381)
                      .....+.++|+|++|.++. ..+.|.++.        .|..++.+.....    ...-...+..+.++|+|++|+++.++
T Consensus       245 ~~~~~i~ispdg~~lyvsnr~~~sI~vf~--------~d~~~g~l~~~~~----~~~~G~~Pr~~~~s~~g~~l~Va~~~  312 (345)
T PF10282_consen  245 NAPAEIAISPDGRFLYVSNRGSNSISVFD--------LDPATGTLTLVQT----VPTGGKFPRHFAFSPDGRYLYVANQD  312 (345)
T ss_dssp             SSEEEEEE-TTSSEEEEEECTTTEEEEEE--------ECTTTTTEEEEEE----EEESSSSEEEEEE-TTSSEEEEEETT
T ss_pred             CCceeEEEecCCCEEEEEeccCCEEEEEE--------EecCCCceEEEEE----EeCCCCCccEEEEeCCCCEEEEEecC
Confidence            2578899999999877655 345565522        3334444332211    11112335557889999999977654


Q ss_pred             H-HHhccC
Q psy4650         244 T-IKYRLD  250 (381)
Q Consensus       244 ~-~~~~~d  250 (381)
                      . .+..++
T Consensus       313 s~~v~vf~  320 (345)
T PF10282_consen  313 SNTVSVFD  320 (345)
T ss_dssp             TTEEEEEE
T ss_pred             CCeEEEEE
Confidence            3 333333

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PTZ00400 DnaK-type molecular chaperone; Provisional

Probab=98.43  E-value=6.7e-07  Score=87.38  Aligned_cols=77  Identities=18%  Similarity=0.269  Sum_probs=68.5

Q ss_pred             HHHHhhhhhhhhHhhhccccceeeEeeccccC----cceEEeecHHHHHHHHHHHHHHhHHHHHHHHHhCCCCccccccc
Q psy4650         304 IGGLLTSFVQPCMHVLSTLQSSNVFVESLYDG----LDFHHNVSRARFESLIGGLLTSFVQPIEDVLSRSNITHDQINKF  379 (381)
Q Consensus       304 ~~~l~~~~~~~~~~~Ls~~~~~~~~~~~~~~~----~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~v  379 (381)
                      ....+.+.++.+|+.|+....+.+.++.+...    .++..+++|.+||++++++|.+++++|+++|++|++++++|+.|
T Consensus       292 a~~~L~~~aE~aK~~LS~~~~~~i~i~~~~~d~~g~~~~~~~itR~efe~l~~~l~~~~~~~i~~~L~~a~~~~~~i~~V  371 (663)
T PTZ00400        292 ALQRLREAAETAKIELSSKTQTEINLPFITADQSGPKHLQIKLSRAKLEELTHDLLKKTIEPCEKCIKDAGVKKDELNDV  371 (663)
T ss_pred             HHHHHHHHHHHHHHHcCCCCceEEEEEeeccCCCCceEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCcEE
Confidence            34456788999999999988888888876532    57889999999999999999999999999999999999999998


Q ss_pred             c
Q psy4650         380 T  380 (381)
Q Consensus       380 ~  380 (381)
                      +
T Consensus       372 i  372 (663)
T PTZ00400        372 I  372 (663)
T ss_pred             E
Confidence            6

>KOG3914|consensus

Probab=98.42  E-value=5.9e-06  Score=71.90  Aligned_cols=156  Identities=17%  Similarity=0.133  Sum_probs=103.2

Q ss_pred             ecCCCceEEEEEecCCeEEEecCCCccc--eeeEeeccccccEEEEEeeeCCCccEE-EEEcCCCeEEEEECCCCeEEEE
Q psy4650          41 TNKDMIEYKISYQESSRVKAFNPIQVAT--LILKTLYGHEKGVNCVDYYHGGDKPYL-ISGADDRLVKIWDYQNKTCVQT  117 (381)
Q Consensus        41 ~~~~~~~~~~s~~~d~~v~i~~~~~~~~--~~~~~l~~h~~~v~~~~~~~~~~~~~l-~s~~~d~~v~vwd~~~~~~~~~  117 (381)
                      ..++.+.+++.+..+....+++......  .++.... -...-+++.|..+...-.+ -.++....+.+|....+. ...
T Consensus        69 ~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~-v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~-~~~  146 (390)
T KOG3914|consen   69 LTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSC-VPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGR-CEP  146 (390)
T ss_pred             ccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEee-cccCcceeeeeeccceEEEEeecCCceeeeeecccccC-cch
Confidence            3345577888777777766776654332  2222211 1222334444333332122 234556667777766543 445


Q ss_pred             eccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEE-ecCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCC
Q psy4650         118 LEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISL-TYGLERVWTISSLKGSNNVAIGYDEGSVLLKVGREE  196 (381)
Q Consensus       118 ~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~-~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~~~~~  196 (381)
                      +-||-..+..++|+||++++.++..|..|++-....--.+.++ -||...|..++..++. .|++|+.|+++++      
T Consensus       147 ~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~-~LlS~sGD~tlr~------  219 (390)
T KOG3914|consen  147 ILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNY-LLLSGSGDKTLRL------  219 (390)
T ss_pred             hhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCc-eeeecCCCCcEEE------
Confidence            5689999999999999999999999999999887655444444 4699999999988764 4899999999999      


Q ss_pred             ceEEEecCCCEEE
Q psy4650         197 PAVSMDVNGCKII  209 (381)
Q Consensus       197 ~~~~~d~~~~~~~  209 (381)
                          ||..+|+.+
T Consensus       220 ----Wd~~sgk~L  228 (390)
T KOG3914|consen  220 ----WDITSGKLL  228 (390)
T ss_pred             ----EecccCCcc
Confidence                666555543

>PRK13411 molecular chaperone DnaK; Provisional

Probab=98.42  E-value=6.2e-07  Score=87.53  Aligned_cols=76  Identities=16%  Similarity=0.302  Sum_probs=68.0

Q ss_pred             HHHhhhhhhhhHhhhccccceeeEeecccc----CcceEEeecHHHHHHHHHHHHHHhHHHHHHHHHhCCCCcccccccc
Q psy4650         305 GGLLTSFVQPCMHVLSTLQSSNVFVESLYD----GLDFHHNVSRARFESLIGGLLTSFVQPIEDVLSRSNITHDQINKFT  380 (381)
Q Consensus       305 ~~l~~~~~~~~~~~Ls~~~~~~~~~~~~~~----~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~v~  380 (381)
                      ...+...++.+|+.||....+.++++.+..    ..++...++|.+||++++++|.+++.+++++|++|++++++||.|+
T Consensus       253 ~~rL~~~aE~aK~~LS~~~~~~i~i~~~~~d~~~~~~~~~~itR~~fe~l~~~l~~~~~~~i~~~L~~a~~~~~~id~Vi  332 (653)
T PRK13411        253 LQRLREAAEKAKIELSSMLTTSINLPFITADETGPKHLEMELTRAKFEELTKDLVEATIEPMQQALKDAGLKPEDIDRVI  332 (653)
T ss_pred             HHHHHHHHHHHHHhcCCCCceEEEEeeeccCCCCCeeEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCcEEE
Confidence            345678899999999999889999887643    3568899999999999999999999999999999999999999986

>KOG4714|consensus

Probab=98.39  E-value=1.5e-06  Score=71.31  Aligned_cols=94  Identities=30%  Similarity=0.384  Sum_probs=71.5

Q ss_pred             eEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCe-EEEEeccCCCCEEEEEEecCC-
Q psy4650          57 RVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKT-CVQTLEGHGQNISAVCFHPEL-  134 (381)
Q Consensus        57 ~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~-~~~~~~~~~~~v~~~~~~p~~-  134 (381)
                      ..+.|+...........+.  ...|.+++-+|..+ +.+++|+.||.+.+||.+... +...++.|..+++.+-|||.. 
T Consensus       160 ~~~a~~~~p~~t~~~~~~~--~~~v~~l~~hp~qq-~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p  236 (319)
T KOG4714|consen  160 NFYANTLDPIKTLIPSKKA--LDAVTALCSHPAQQ-HLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNP  236 (319)
T ss_pred             ceeeecccccccccccccc--cccchhhhCCcccc-cEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCc
Confidence            4556665443333222221  23499999998766 488999999999999998875 345678899999999999955 


Q ss_pred             CEEEEEeCCCCEEEEeCCC
Q psy4650         135 PIVITGSEDGSVRVWHSGT  153 (381)
Q Consensus       135 ~~l~s~~~d~~i~vwd~~~  153 (381)
                      ..|.++++||.+.-||..+
T Consensus       237 ~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  237 EHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             hheeEecCCCcEEEEcCCC
Confidence            4999999999999999875

>KOG1064|consensus

Probab=98.38  E-value=4.9e-06  Score=84.91  Aligned_cols=147  Identities=14%  Similarity=0.166  Sum_probs=111.8

Q ss_pred             eeeecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEEE
Q psy4650          38 DITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQT  117 (381)
Q Consensus        38 ~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~  117 (381)
                      .+..++- ..+-++|+.||.+++|.......-+....-|. ..|+.+.|+..|+  .+..+..||.+.+|... .++...
T Consensus      2213 r~~sHp~-~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~-s~vtr~~f~~qGn--k~~i~d~dg~l~l~q~~-pk~~~s 2287 (2439)
T KOG1064|consen 2213 RMTSHPS-DPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGN-SRVTRSRFNHQGN--KFGIVDGDGDLSLWQAS-PKPYTS 2287 (2439)
T ss_pred             eecCCCC-CceEEecCCCceEEEEeccCCCeEEEeeccCc-chhhhhhhcccCC--ceeeeccCCceeecccC-Ccceec
Confidence            3445554 34667999999999998764332222222344 8899999998777  58888999999999987 666777


Q ss_pred             eccCCCCEEEEEEecCCCEEEEEe---CCCCEEEEeCC--CCeeeEEEecCCcceEEEEEcCCCCEEEEEeCCCeEEEEe
Q psy4650         118 LEGHGQNISAVCFHPELPIVITGS---EDGSVRVWHSG--THRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKV  192 (381)
Q Consensus       118 ~~~~~~~v~~~~~~p~~~~l~s~~---~d~~i~vwd~~--~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~  192 (381)
                      .++|....+...|--  ..+++++   .++.+.+||.-  +...... ..|.+.++++++-|....+++|+.+|.+.+|+
T Consensus      2288 ~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~-~~H~~gaT~l~~~P~~qllisggr~G~v~l~D 2364 (2439)
T KOG1064|consen 2288 WQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH-TCHDGGATVLAYAPKHQLLISGGRKGEVCLFD 2364 (2439)
T ss_pred             cccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceee-eecCCCceEEEEcCcceEEEecCCcCcEEEee
Confidence            888988888888865  5566553   48899999964  2222222 77999999999999999999999999999954

>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]

Probab=98.37  E-value=4.4e-07  Score=86.75  Aligned_cols=75  Identities=23%  Similarity=0.367  Sum_probs=71.9

Q ss_pred             HHhhhhhhhhHhhhccccceeeEeeccccCcceEEeecHHHHHHHHHHHHHHhHHHHHHHHHhCCCCcccccccc
Q psy4650         306 GLLTSFVQPCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIGGLLTSFVQPIEDVLSRSNITHDQINKFT  380 (381)
Q Consensus       306 ~l~~~~~~~~~~~Ls~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~v~  380 (381)
                      ..++.+++..|..||....+.+.++.+...+++...++|.+||+++.++|.+++.|++++|++|++++.+|++|+
T Consensus       240 ~rL~~~ae~aK~~LS~~~~~~i~~~~~~~~~~~~~~ltR~~~E~l~~dll~r~~~~~~~al~~a~l~~~~I~~Vi  314 (579)
T COG0443         240 QRLREAAEKAKIELSSATQTSINLPSIGGDIDLLKELTRAKFEELILDLLERTIEPVEQALKDAGLEKSDIDLVI  314 (579)
T ss_pred             HHHHHHHHHHHHHcccccccccchhhccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhCceEE
Confidence            678889999999999999999999999888889999999999999999999999999999999999999999997

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=98.37  E-value=0.00034  Score=63.41  Aligned_cols=172  Identities=12%  Similarity=0.119  Sum_probs=111.7

Q ss_pred             HhhhcceeeeecCCCceEEEEEecCCeEEEecCCCcccee--eEeec-cccccEEEEEeeeCCCccEEEEEcCCCeEEEE
Q psy4650          31 IVRETKVDITTNKDMIEYKISYQESSRVKAFNPIQVATLI--LKTLY-GHEKGVNCVDYYHGGDKPYLISGADDRLVKIW  107 (381)
Q Consensus        31 ~~~~~~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~--~~~l~-~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vw  107 (381)
                      ....+++.+...+++..++++.-....|.+|+.......+  ...+. .....-.-+.|+|++.. +.+....+++|.++
T Consensus       141 q~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~-~Yv~~e~s~~v~v~  219 (345)
T PF10282_consen  141 QEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKY-AYVVNELSNTVSVF  219 (345)
T ss_dssp             TSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSE-EEEEETTTTEEEEE
T ss_pred             cccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCE-EEEecCCCCcEEEE
Confidence            3457788888898877666766667799999986533211  22222 22345678999998773 55677789999999


Q ss_pred             ECC--CCe--EEEEecc----C--CCCEEEEEEecCCCEEEEEe-CCCCEEEEeCC--CCe--eeEEEecCCcceEEEEE
Q psy4650         108 DYQ--NKT--CVQTLEG----H--GQNISAVCFHPELPIVITGS-EDGSVRVWHSG--THR--LEISLTYGLERVWTISS  172 (381)
Q Consensus       108 d~~--~~~--~~~~~~~----~--~~~v~~~~~~p~~~~l~s~~-~d~~i~vwd~~--~~~--~~~~~~~~~~~v~~v~~  172 (381)
                      ++.  ++.  .+..+..    .  ......+.++|+|++|..+. ....|.+|++.  +|.  .+..+.......+.+.+
T Consensus       220 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~  299 (345)
T PF10282_consen  220 DYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAF  299 (345)
T ss_dssp             EEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE
T ss_pred             eecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEE
Confidence            887  443  2222221    1  12578899999999877665 47789999984  343  33344444456899999


Q ss_pred             cCCCCEEEEEe-CCCeEEEEecCCCceEEEecCCCEEEEE
Q psy4650         173 LKGSNNVAIGY-DEGSVLLKVGREEPAVSMDVNGCKIIWA  211 (381)
Q Consensus       173 ~~~~~~l~~~~-~dg~v~i~~~~~~~~~~~d~~~~~~~~~  211 (381)
                      +|+|++|+++. .++.|.++.        +|..+|.+...
T Consensus       300 s~~g~~l~Va~~~s~~v~vf~--------~d~~tG~l~~~  331 (345)
T PF10282_consen  300 SPDGRYLYVANQDSNTVSVFD--------IDPDTGKLTPV  331 (345)
T ss_dssp             -TTSSEEEEEETTTTEEEEEE--------EETTTTEEEEE
T ss_pred             eCCCCEEEEEecCCCeEEEEE--------EeCCCCcEEEe
Confidence            99999988876 556777744        67777775543

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG4532|consensus

Probab=98.37  E-value=1.7e-05  Score=65.62  Aligned_cols=145  Identities=10%  Similarity=-0.028  Sum_probs=98.7

Q ss_pred             ceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEEEeccCCCCE
Q psy4650          46 IEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNI  125 (381)
Q Consensus        46 ~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v  125 (381)
                      -.+++.|+..|...+|.+..... .++....|...|+-+.=..+.. .-+..++.|.++++.++..+.....+....-.+
T Consensus        84 c~~la~gG~~g~fd~~~~~tn~~-h~~~cd~snn~v~~~~r~cd~~-~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~  161 (344)
T KOG4532|consen   84 CVTLADGGASGQFDLFACNTNDG-HLYQCDVSNNDVTLVKRYCDLK-FPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQ  161 (344)
T ss_pred             ccEEEeccccceeeeecccCccc-ceeeecccccchhhhhhhcccc-cceeeccCCcceeEEEEecCcccceeeccccce
Confidence            45889999999999999864322 2333444554443332111111 136678899999999887664333332222237


Q ss_pred             EEEEEecCCCEEEEEeCCCCEEEEeCCCC--eeeE-EEecCCcceEEEEEcCCCCEEEEEeCCCeEEEEe
Q psy4650         126 SAVCFHPELPIVITGSEDGSVRVWHSGTH--RLEI-SLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKV  192 (381)
Q Consensus       126 ~~~~~~p~~~~l~s~~~d~~i~vwd~~~~--~~~~-~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~  192 (381)
                      .+++++|+++.+++.+....|-.|.+...  ..+. .....++.-.+..|+.....+|+++.||.+.+|+
T Consensus       162 ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~D  231 (344)
T KOG4532|consen  162 NSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYD  231 (344)
T ss_pred             eeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEE
Confidence            89999999999999999899999987643  2333 2233445567889999999999999999999943

>PRK00290 dnaK molecular chaperone DnaK; Provisional

Probab=98.36  E-value=1.2e-06  Score=85.56  Aligned_cols=76  Identities=17%  Similarity=0.258  Sum_probs=68.3

Q ss_pred             HHHhhhhhhhhHhhhccccceeeEeecccc----CcceEEeecHHHHHHHHHHHHHHhHHHHHHHHHhCCCCcccccccc
Q psy4650         305 GGLLTSFVQPCMHVLSTLQSSNVFVESLYD----GLDFHHNVSRARFESLIGGLLTSFVQPIEDVLSRSNITHDQINKFT  380 (381)
Q Consensus       305 ~~l~~~~~~~~~~~Ls~~~~~~~~~~~~~~----~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~v~  380 (381)
                      ...+.+.++.+|+.|+....+.+.++.+..    ..++...++|.+||+++++++.+++.+++++|++|++++.+||.|+
T Consensus       252 ~~rL~~~ae~aK~~LS~~~~~~i~i~~~~~d~~g~~~~~~~itR~~fe~l~~~l~~~~~~~i~~~l~~a~~~~~~id~Vi  331 (627)
T PRK00290        252 LQRLKEAAEKAKIELSSAQQTEINLPFITADASGPKHLEIKLTRAKFEELTEDLVERTIEPCKQALKDAGLSVSDIDEVI  331 (627)
T ss_pred             HHHHHHHHHHHHHHcCCCCeEEEEEeecccCCCCCeEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhCcEEE
Confidence            345677899999999999889999887753    3678899999999999999999999999999999999999999986

>PRK01029 tolB translocation protein TolB; Provisional

Probab=98.36  E-value=3.6e-05  Score=71.67  Aligned_cols=145  Identities=14%  Similarity=-0.009  Sum_probs=85.9

Q ss_pred             eeeeecCCCceEEEEEecCC----eEEEecCCCcc-ceeeEeeccccccEEEEEeeeCCCccEEEE-EcCCCeEEEEE--
Q psy4650          37 VDITTNKDMIEYKISYQESS----RVKAFNPIQVA-TLILKTLYGHEKGVNCVDYYHGGDKPYLIS-GADDRLVKIWD--  108 (381)
Q Consensus        37 ~~i~~~~~~~~~~~s~~~d~----~v~i~~~~~~~-~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s-~~~d~~v~vwd--  108 (381)
                      ....+.|++..+.++...+|    .+..|++.... ........++.+......|+|+|.  .|+. ...+|...+|.  
T Consensus       234 ~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~--~Laf~s~~~g~~~ly~~~  311 (428)
T PRK01029        234 LMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGT--RLVFVSNKDGRPRIYIMQ  311 (428)
T ss_pred             cceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCC--EEEEEECCCCCceEEEEE
Confidence            44556777666666554433    23335554211 111122223334456789999988  4544 44566655554  


Q ss_pred             CCC-CeEEEEeccCCCCEEEEEEecCCCEEEEEeCC---CCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeC
Q psy4650         109 YQN-KTCVQTLEGHGQNISAVCFHPELPIVITGSED---GSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYD  184 (381)
Q Consensus       109 ~~~-~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d---~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~  184 (381)
                      +.. +.....+..+...+....|+|+|+.++..+.+   ..|.+||+.+++... +......+....|+|+|+.++....
T Consensus       312 ~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~-Lt~~~~~~~~p~wSpDG~~L~f~~~  390 (428)
T PRK01029        312 IDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQ-LTTSPENKESPSWAIDSLHLVYSAG  390 (428)
T ss_pred             CcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEE-ccCCCCCccceEECCCCCEEEEEEC
Confidence            432 22234444444566789999999988766542   468999999887643 3323345677899999998775443

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=98.35  E-value=2.2e-05  Score=71.31  Aligned_cols=98  Identities=16%  Similarity=0.204  Sum_probs=75.4

Q ss_pred             EEEEcCCCeEEEEECCCCeEEEEeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEecCCcceEEEEEcC
Q psy4650          95 LISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLK  174 (381)
Q Consensus        95 l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~  174 (381)
                      +++-..++.|.+.|..+.+.+..+....+.-..+.|+|+|+++..++.|+.|.++|+.+++.+.++.... ....+++++
T Consensus         9 ~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~-~~~~i~~s~   87 (369)
T PF02239_consen    9 YVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG-NPRGIAVSP   87 (369)
T ss_dssp             EEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS-EEEEEEE--
T ss_pred             EEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC-CcceEEEcC
Confidence            4566789999999999999999998654443457799999999999999999999999999999987654 467899999


Q ss_pred             CCCEEEEEe-CCCeEEEEec
Q psy4650         175 GSNNVAIGY-DEGSVLLKVG  193 (381)
Q Consensus       175 ~~~~l~~~~-~dg~v~i~~~  193 (381)
                      +|+++++++ ..+.+.+++.
T Consensus        88 DG~~~~v~n~~~~~v~v~D~  107 (369)
T PF02239_consen   88 DGKYVYVANYEPGTVSVIDA  107 (369)
T ss_dssp             TTTEEEEEEEETTEEEEEET
T ss_pred             CCCEEEEEecCCCceeEecc
Confidence            999888765 6788888553

...

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.33  E-value=1.6e-06  Score=72.94  Aligned_cols=234  Identities=13%  Similarity=0.223  Sum_probs=144.9

Q ss_pred             HhhhhhcccccccCCChhhHHHHhhhcceeeeecCCCceEEEEEecCCeEEEecCCCcc---ceeeEeecccc-------
Q psy4650           9 KNTIIKNKRALNTELTETDIETIVRETKVDITTNKDMIEYKISYQESSRVKAFNPIQVA---TLILKTLYGHE-------   78 (381)
Q Consensus         9 ~~t~~~~k~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~---~~~~~~l~~h~-------   78 (381)
                      +|-++++|.-.|...+-..+  ..+....++.+... +.|+++|...|.|.+|.-+...   ...+..+++|.       
T Consensus         4 ~n~~~kf~QCfgdk~d~~~~--tead~ItaVefd~t-g~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLk   80 (460)
T COG5170           4 KNEILKFKQCFGDKLDLNSS--TEADKITAVEFDET-GLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLK   80 (460)
T ss_pred             chhhhhhHhhhcchhhcccc--cccceeeEEEeccc-cceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhh
Confidence            56778888776755544322  22334445555554 6799999999999999865322   23344466664       


Q ss_pred             -----ccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCC-----------------------------------------
Q psy4650          79 -----KGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNK-----------------------------------------  112 (381)
Q Consensus        79 -----~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~-----------------------------------------  112 (381)
                           ..|..+.|..++....+.-.+.|+++++|.+...                                         
T Consensus        81 SleieEKin~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iia  160 (460)
T COG5170          81 SLEIEEKINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIA  160 (460)
T ss_pred             hccHHHHhhheeeecCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEE
Confidence                 4578888988777777888889999999987431                                         


Q ss_pred             -eEEEEe-ccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCee---eEEEecC-----CcceEEEEEcCC-CCEEEE
Q psy4650         113 -TCVQTL-EGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRL---EISLTYG-----LERVWTISSLKG-SNNVAI  181 (381)
Q Consensus       113 -~~~~~~-~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~---~~~~~~~-----~~~v~~v~~~~~-~~~l~~  181 (381)
                       .+.+.+ ..|.-.+.+++++.+...++++ .|=.|-+|++.-...   +..++.|     ...+++..|+|. ...+..
T Consensus       161 a~p~rvyaNaH~yhiNSiS~NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmY  239 (460)
T COG5170         161 AKPCRVYANAHPYHINSISFNSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMY  239 (460)
T ss_pred             eccceeccccceeEeeeeeecCchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEE
Confidence             001112 3466667889999988888776 466789999863322   2222222     235788899996 567777


Q ss_pred             EeCCCeEEEEecCCCceEEEecCCCE------EEEEec-----CceeecccccCCccccccCCceEEeeehHHHHHhccC
Q psy4650         182 GYDEGSVLLKVGREEPAVSMDVNGCK------IIWARH-----SEVQQANLKTMPEVFENITAGVVLTLSVHVTIKYRLD  250 (381)
Q Consensus       182 ~~~dg~v~i~~~~~~~~~~~d~~~~~------~~~~~~-----~~~~~~~~~~~~~~~~~~~dg~~l~~~~~d~~~~~~d  250 (381)
                      .+..|.+++          -|.+-..      .++...     .......+.+.+ .+.|++.|+++.+... .+..+||
T Consensus       240 SsSkG~Ikl----------~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSIS-D~kFs~ngryIlsRdy-ltvkiwD  307 (460)
T COG5170         240 SSSKGEIKL----------NDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSIS-DFKFSDNGRYILSRDY-LTVKIWD  307 (460)
T ss_pred             ecCCCcEEe----------hhhhhhhhccCchhhhhhccCcccchhHHHHhhhhc-ceEEcCCCcEEEEecc-ceEEEEe
Confidence            888999998          3332111      111100     000111112222 2788999988876653 4677898


Q ss_pred             CCcChhHH
Q psy4650         251 ISDSHRSV  258 (381)
Q Consensus       251 ~~~~~~~~  258 (381)
                      +.....++
T Consensus       308 vnm~k~pi  315 (460)
T COG5170         308 VNMAKNPI  315 (460)
T ss_pred             cccccCCc
Confidence            87655443

>KOG4714|consensus

Probab=98.33  E-value=1.6e-06  Score=71.07  Aligned_cols=142  Identities=13%  Similarity=0.184  Sum_probs=89.2

Q ss_pred             EEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCe------EEEEECCCCeEEEEeccC
Q psy4650          48 YKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRL------VKIWDYQNKTCVQTLEGH  121 (381)
Q Consensus        48 ~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~------v~vwd~~~~~~~~~~~~~  121 (381)
                      -++.++.||.+-+++.+. .....+.+..-...-.+.++...++   ++.++.-|+      .+.|+++..+.+..-+-.
T Consensus       103 ~V~~~~~dg~~~v~s~~~-~~~~~~~i~~~~~~~as~~~~~~~~---~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~  178 (319)
T KOG4714|consen  103 RVCIGYADGSLAVFSTDK-DLALMSRIPSIHSGSASRKICRHGN---SILSGGCGNWNAQDNFYANTLDPIKTLIPSKKA  178 (319)
T ss_pred             ceEecCCCceEEEEechH-HHhhhhhcccccccccccceeeccc---EEecCCcceEeeccceeeecccccccccccccc
Confidence            377889999999998753 2222222222111122222322233   333333333      445555544322222222


Q ss_pred             CCCEEEEEEecCCC-EEEEEeCCCCEEEEeCCCCeeeE-EEecCCcceEEEEEcCC-CCEEEEEeCCCeEEEEec
Q psy4650         122 GQNISAVCFHPELP-IVITGSEDGSVRVWHSGTHRLEI-SLTYGLERVWTISSLKG-SNNVAIGYDEGSVLLKVG  193 (381)
Q Consensus       122 ~~~v~~~~~~p~~~-~l~s~~~d~~i~vwd~~~~~~~~-~~~~~~~~v~~v~~~~~-~~~l~~~~~dg~v~i~~~  193 (381)
                      ...|.+++-+|..+ .+++|+.||.+-+||.+...... .+..|...++.+.|+|. +..|.+++.||.+.-|+.
T Consensus       179 ~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wda  253 (319)
T KOG4714|consen  179 LDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDA  253 (319)
T ss_pred             cccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcC
Confidence            34599999999665 66778889999999999875433 35678999999999995 668999999999988443

>TIGR02350 prok_dnaK chaperone protein DnaK

Probab=98.32  E-value=1.6e-06  Score=84.25  Aligned_cols=76  Identities=17%  Similarity=0.269  Sum_probs=67.8

Q ss_pred             HHHhhhhhhhhHhhhccccceeeEeecccc----CcceEEeecHHHHHHHHHHHHHHhHHHHHHHHHhCCCCcccccccc
Q psy4650         305 GGLLTSFVQPCMHVLSTLQSSNVFVESLYD----GLDFHHNVSRARFESLIGGLLTSFVQPIEDVLSRSNITHDQINKFT  380 (381)
Q Consensus       305 ~~l~~~~~~~~~~~Ls~~~~~~~~~~~~~~----~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~v~  380 (381)
                      ...+...++.+|+.|+....+.+.++.+..    +.++..+++|.+||+++++++++++.+++++|++|++++++||.|+
T Consensus       250 ~~~L~~~ae~aK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itr~~fe~l~~~l~~~~~~~i~~~l~~a~~~~~~i~~V~  329 (595)
T TIGR02350       250 LQRLKEAAEKAKIELSSVLSTEINLPFITADASGPKHLEMTLTRAKFEELTADLVERTKEPVRQALKDAGLSASDIDEVI  329 (595)
T ss_pred             HHHHHHHHHHHHHHcCCCCceEEEeeecccCCCCCeeEEEEEeHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHCcEEE
Confidence            344667899999999999999999887653    3568899999999999999999999999999999999999999986

Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=98.30  E-value=0.00052  Score=59.47  Aligned_cols=196  Identities=14%  Similarity=0.187  Sum_probs=122.3

Q ss_pred             hhcceeeeecCCCceEEEEEe-cCCeEEEecCCCc-cceeeEeecccccc----------EEEEEeeeCCCccEEEEEc-
Q psy4650          33 RETKVDITTNKDMIEYKISYQ-ESSRVKAFNPIQV-ATLILKTLYGHEKG----------VNCVDYYHGGDKPYLISGA-   99 (381)
Q Consensus        33 ~~~~~~i~~~~~~~~~~~s~~-~d~~v~i~~~~~~-~~~~~~~l~~h~~~----------v~~~~~~~~~~~~~l~s~~-   99 (381)
                      ...++-+..++++. ++++++ ..|.|.++-+... .......+-.|.+.          +.+..+.|++.  +++++. 
T Consensus        88 g~~p~yvsvd~~g~-~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~--~l~v~DL  164 (346)
T COG2706          88 GSPPCYVSVDEDGR-FVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGR--YLVVPDL  164 (346)
T ss_pred             CCCCeEEEECCCCC-EEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCC--EEEEeec
Confidence            34445566666644 555444 4678888877542 11222233346655          88999999887  666553 


Q ss_pred             CCCeEEEEECCCCeEE----EEeccCCCCEEEEEEecCCCEEEEEeC-CCCEEEEeCCCC--ee--eEEEe------cCC
Q psy4650         100 DDRLVKIWDYQNKTCV----QTLEGHGQNISAVCFHPELPIVITGSE-DGSVRVWHSGTH--RL--EISLT------YGL  164 (381)
Q Consensus       100 ~d~~v~vwd~~~~~~~----~~~~~~~~~v~~~~~~p~~~~l~s~~~-d~~i~vwd~~~~--~~--~~~~~------~~~  164 (381)
                      .--.|.+|++..|...    ..++ ...+-..+.|||++++....++ +++|.+|.....  +.  ++.+.      ...
T Consensus       165 G~Dri~~y~~~dg~L~~~~~~~v~-~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~  243 (346)
T COG2706         165 GTDRIFLYDLDDGKLTPADPAEVK-PGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGT  243 (346)
T ss_pred             CCceEEEEEcccCccccccccccC-CCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCC
Confidence            3446788999877532    1222 3445689999999997766655 899999998873  22  22221      123


Q ss_pred             cceEEEEEcCCCCEEEEEeCC-CeEEEEecCCCceEEEecCCCEEEEEecCceeecccccCCccccccCCceEEeeehHH
Q psy4650         165 ERVWTISSLKGSNNVAIGYDE-GSVLLKVGREEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSVHV  243 (381)
Q Consensus       165 ~~v~~v~~~~~~~~l~~~~~d-g~v~i~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~d  243 (381)
                      .....+..+|+|++|.++..- ..|-+        +..|..++++......    ..-...++.|.++++|.+|..+.++
T Consensus       244 ~~~aaIhis~dGrFLYasNRg~dsI~~--------f~V~~~~g~L~~~~~~----~teg~~PR~F~i~~~g~~Liaa~q~  311 (346)
T COG2706         244 NWAAAIHISPDGRFLYASNRGHDSIAV--------FSVDPDGGKLELVGIT----PTEGQFPRDFNINPSGRFLIAANQK  311 (346)
T ss_pred             CceeEEEECCCCCEEEEecCCCCeEEE--------EEEcCCCCEEEEEEEe----ccCCcCCccceeCCCCCEEEEEccC
Confidence            456788899999988776432 12222        3467777775443222    1222336668889999999988776


Q ss_pred             H
Q psy4650         244 T  244 (381)
Q Consensus       244 ~  244 (381)
                      .
T Consensus       312 s  312 (346)
T COG2706         312 S  312 (346)
T ss_pred             C
Confidence            4

>TIGR01991 HscA Fe-S protein assembly chaperone HscA

Probab=98.29  E-value=2.2e-06  Score=82.93  Aligned_cols=73  Identities=23%  Similarity=0.338  Sum_probs=66.1

Q ss_pred             HHhhhhhhhhHhhhccccceeeEeeccccCcceEEeecHHHHHHHHHHHHHHhHHHHHHHHHhCCCCcccccccc
Q psy4650         306 GLLTSFVQPCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIGGLLTSFVQPIEDVLSRSNITHDQINKFT  380 (381)
Q Consensus       306 ~l~~~~~~~~~~~Ls~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~v~  380 (381)
                      ..+...++.+|+.|+....+.+.++.  ++.++...++|.+||+++++++.+++++++++|++|++++++||.|+
T Consensus       245 ~~L~~~ae~aK~~LS~~~~~~i~i~~--~g~~~~~~itr~efe~l~~~ll~~i~~~i~~~L~~a~~~~~~id~Vi  317 (599)
T TIGR01991       245 RLLLQAARAAKEALTDAESVEVDFTL--DGKDFKGKLTRDEFEALIQPLVQKTLSICRRALRDAGLSVEEIKGVV  317 (599)
T ss_pred             HHHHHHHHHHHHhCCCCceEEEEEEE--CCcEEEEEEeHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhCCEEE
Confidence            34566889999999998888888874  67889999999999999999999999999999999999999999986

The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.

>KOG4190|consensus

Probab=98.29  E-value=7.7e-07  Score=80.33  Aligned_cols=167  Identities=19%  Similarity=0.295  Sum_probs=105.3

Q ss_pred             eeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCC-------eEEEEeccCCCCEEEEEEecCCCEEEEEeC
Q psy4650          70 ILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNK-------TCVQTLEGHGQNISAVCFHPELPIVITGSE  142 (381)
Q Consensus        70 ~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~-------~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~  142 (381)
                      .+..+.||+..|..++...+.+  -+++++.|++|++|.++..       .+..++..|..+|+.+.|-.+.+.++++  
T Consensus       727 rL~nf~GH~~~iRai~AidNEN--SFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--  802 (1034)
T KOG4190|consen  727 RLCNFTGHQEKIRAIAAIDNEN--SFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--  802 (1034)
T ss_pred             eeecccCcHHHhHHHHhccccc--ceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--
Confidence            3566779999988886544333  6899999999999998652       4778889999999999999888888765  


Q ss_pred             CCCEEEEeCCCCeeeEEEec--CCcceEEEEEcCC--CCE-EEEEeCCCeEEEEecCCCceEEEecCCCEEE--EEecCc
Q psy4650         143 DGSVRVWHSGTHRLEISLTY--GLERVWTISSLKG--SNN-VAIGYDEGSVLLKVGREEPAVSMDVNGCKII--WARHSE  215 (381)
Q Consensus       143 d~~i~vwd~~~~~~~~~~~~--~~~~v~~v~~~~~--~~~-l~~~~~dg~v~i~~~~~~~~~~~d~~~~~~~--~~~~~~  215 (381)
                      |+-+.+||.--|+++..+..  ..+.+..+...|+  ... ++.++...++++          +|.+.+...  |.+...
T Consensus       803 D~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl----------~DaRsce~~~E~kVcna  872 (1034)
T KOG4190|consen  803 DGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKL----------FDARSCEWTCELKVCNA  872 (1034)
T ss_pred             cCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhhee----------eecccccceeeEEeccC
Confidence            88999999887776653321  2233333444443  333 344467888888          777666543  222211


Q ss_pred             eeecccccCCccccccCCceEEeeehHHHHHhccCCCc
Q psy4650         216 VQQANLKTMPEVFENITAGVVLTLSVHVTIKYRLDISD  253 (381)
Q Consensus       216 ~~~~~~~~~~~~~~~~~dg~~l~~~~~d~~~~~~d~~~  253 (381)
                      ....   +...-++.-|.|..++.+-..+.....|.+.
T Consensus       873 ~~Pn---a~~R~iaVa~~GN~lAa~LSnGci~~LDaR~  907 (1034)
T KOG4190|consen  873 PGPN---ALTRAIAVADKGNKLAAALSNGCIAILDARN  907 (1034)
T ss_pred             CCCc---hheeEEEeccCcchhhHHhcCCcEEEEecCC
Confidence            1110   0001022235566666555555554444443

>CHL00094 dnaK heat shock protein 70

Probab=98.28  E-value=2.4e-06  Score=83.22  Aligned_cols=75  Identities=20%  Similarity=0.327  Sum_probs=67.5

Q ss_pred             HHhhhhhhhhHhhhccccceeeEeecccc----CcceEEeecHHHHHHHHHHHHHHhHHHHHHHHHhCCCCcccccccc
Q psy4650         306 GLLTSFVQPCMHVLSTLQSSNVFVESLYD----GLDFHHNVSRARFESLIGGLLTSFVQPIEDVLSRSNITHDQINKFT  380 (381)
Q Consensus       306 ~l~~~~~~~~~~~Ls~~~~~~~~~~~~~~----~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~v~  380 (381)
                      ..+...++.+|+.|+....+.+.++.+.+    ..++...++|++||+++++++.++..+++++|+++++++++||.|+
T Consensus       255 ~~L~~~aE~aK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itR~~fe~l~~~l~~~~~~~i~~~L~~a~~~~~~i~~Vi  333 (621)
T CHL00094        255 QRLTEAAEKAKIELSNLTQTEINLPFITATQTGPKHIEKTLTRAKFEELCSDLINRCRIPVENALKDAKLDKSDIDEVV  333 (621)
T ss_pred             HHHHHHHHHHHHhcCCCCceEEEEeecccCCCCCeeEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhCcEEE
Confidence            45677889999999998888999887753    3578889999999999999999999999999999999999999986

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.24  E-value=0.00027  Score=65.48  Aligned_cols=189  Identities=11%  Similarity=-0.023  Sum_probs=104.9

Q ss_pred             eeeecCCCce-EEEEEec--CCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcC--CCeEEEEECCCC
Q psy4650          38 DITTNKDMIE-YKISYQE--SSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGAD--DRLVKIWDYQNK  112 (381)
Q Consensus        38 ~i~~~~~~~~-~~~s~~~--d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~--d~~v~vwd~~~~  112 (381)
                      .-.+.+++.. +.++...  +..|.++|+.......+.   ...+......|+|+|.. .+++.+.  +..|.++|+.++
T Consensus       192 ~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt---~~~g~~~~~~~SPDG~~-la~~~~~~g~~~Iy~~dl~~g  267 (419)
T PRK04043        192 FPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIA---SSQGMLVVSDVSKDGSK-LLLTMAPKGQPDIYLYDTNTK  267 (419)
T ss_pred             eEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEe---cCCCcEEeeEECCCCCE-EEEEEccCCCcEEEEEECCCC
Confidence            3445666553 3333232  456788887654433333   34455667889999884 4444443  356777788777


Q ss_pred             eEEEEeccCCCCEEEEEEecCCCEEEEEeC-CC--CEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCCCeEE
Q psy4650         113 TCVQTLEGHGQNISAVCFHPELPIVITGSE-DG--SVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVL  189 (381)
Q Consensus       113 ~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~-d~--~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~  189 (381)
                      .... +..+........|+|+|+.++-.+. .+  .|.+.|+.++..........   ....|+|+|+.++..+....--
T Consensus       268 ~~~~-LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~---~~~~~SPDG~~Ia~~~~~~~~~  343 (419)
T PRK04043        268 TLTQ-ITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGK---NNSSVSTYKNYIVYSSRETNNE  343 (419)
T ss_pred             cEEE-cccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCC---cCceECCCCCEEEEEEcCCCcc
Confidence            6433 3323332345689999997665543 23  67788888877643322111   1248999999888776532100


Q ss_pred             EEecCCCceEEEecCCCEEEEEecCceeecccccCCccccccCCceEEeeehHH
Q psy4650         190 LKVGREEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSVHV  243 (381)
Q Consensus       190 i~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~d  243 (381)
                       +......+...|..++... .+...       +......|+|||+.++.....
T Consensus       344 -~~~~~~~I~v~d~~~g~~~-~LT~~-------~~~~~p~~SPDG~~I~f~~~~  388 (419)
T PRK04043        344 -FGKNTFNLYLISTNSDYIR-RLTAN-------GVNQFPRFSSDGGSIMFIKYL  388 (419)
T ss_pred             -cCCCCcEEEEEECCCCCeE-ECCCC-------CCcCCeEECCCCCEEEEEEcc
Confidence             0000012333676665422 11111       111124689999998887654

>KOG1912|consensus

Probab=98.20  E-value=3.1e-05  Score=73.00  Aligned_cols=141  Identities=14%  Similarity=0.214  Sum_probs=113.5

Q ss_pred             EEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCC----------ccEEEEEcCCCeEEEEECCCCeEEEEe
Q psy4650          49 KISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGD----------KPYLISGADDRLVKIWDYQNKTCVQTL  118 (381)
Q Consensus        49 ~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~----------~~~l~s~~~d~~v~vwd~~~~~~~~~~  118 (381)
                      +++.+....|.+-|..  ..+.++.+.-|...|+.+.|.|...          ...+|++...|.|.+||...+..+..+
T Consensus        28 LiAygshslV~VVDs~--s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l  105 (1062)
T KOG1912|consen   28 LIAYGSHSLVSVVDSR--SLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWL  105 (1062)
T ss_pred             eEEEecCceEEEEehh--hhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhh
Confidence            5666667788888875  4567788899999999999987322          236788889999999999999888999


Q ss_pred             ccCCCCEEEEEEecC---C-CEEEEEeCCCCEEEEeCCCCeeeEEEecCCcceEEEEEcC-CCCEEEEEeCCCeEEEE
Q psy4650         119 EGHGQNISAVCFHPE---L-PIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLK-GSNNVAIGYDEGSVLLK  191 (381)
Q Consensus       119 ~~~~~~v~~~~~~p~---~-~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~-~~~~l~~~~~dg~v~i~  191 (381)
                      ..|..++..++|-|.   . ..|+.-....++.+|+..+|+..+...+......|+.+.| +.+.+..-+..|.+.+.
T Consensus       106 ~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~  183 (1062)
T KOG1912|consen  106 SHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSC  183 (1062)
T ss_pred             cCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEE
Confidence            989999999999773   3 2566666678999999999999999988888888899998 45677777777777663

>KOG2695|consensus

Probab=98.12  E-value=1.3e-05  Score=68.53  Aligned_cols=123  Identities=7%  Similarity=0.161  Sum_probs=90.5

Q ss_pred             ccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCC-----eEEEEeccCCCCEEEEEEec-CCCEEEEEeCCCCEEEEe
Q psy4650          77 HEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNK-----TCVQTLEGHGQNISAVCFHP-ELPIVITGSEDGSVRVWH  150 (381)
Q Consensus        77 h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~-----~~~~~~~~~~~~v~~~~~~p-~~~~l~s~~~d~~i~vwd  150 (381)
                      -.+.|.++.|.-.+.  ++..|...|.|...|++.+     .+...+. |...|+++..-. +++.|++.+.+|+|++||
T Consensus       251 sksDVfAlQf~~s~n--Lv~~GcRngeI~~iDLR~rnqG~~~~a~rly-h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD  327 (425)
T KOG2695|consen  251 SKSDVFALQFAGSDN--LVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-HDSSVTSLQILQFSQQKLMASDMTGKIKLYD  327 (425)
T ss_pred             cchhHHHHHhcccCC--eeEecccCCcEEEEEeeecccCCCcceEEEE-cCcchhhhhhhccccceEeeccCcCceeEee
Confidence            345677778865444  8999999999999999865     3444454 788889888766 778899999999999999


Q ss_pred             CCCCee---eEEEecCCcceEEEE--EcCCCCEEEEEeCCCeEEEEecCCCceEEEecCCCEEEEEe
Q psy4650         151 SGTHRL---EISLTYGLERVWTIS--SLKGSNNVAIGYDEGSVLLKVGREEPAVSMDVNGCKIIWAR  212 (381)
Q Consensus       151 ~~~~~~---~~~~~~~~~~v~~v~--~~~~~~~l~~~~~dg~v~i~~~~~~~~~~~d~~~~~~~~~~  212 (381)
                      ++--+.   +..+.+|...-.-+-  .++....++++++|-..++          |..+.|.++...
T Consensus       328 ~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRi----------Wsl~~ghLl~ti  384 (425)
T KOG2695|consen  328 LRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRI----------WSLDSGHLLCTI  384 (425)
T ss_pred             ehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEE----------EecccCceeecc
Confidence            986555   777777755433332  3355567788889999999          667666666544

>KOG0882|consensus

Probab=98.11  E-value=9.9e-06  Score=71.57  Aligned_cols=202  Identities=13%  Similarity=0.037  Sum_probs=129.8

Q ss_pred             CCCceEEEEEecCCeEEEecCCC-ccceeeEeeccccccEEEEEeeeCCCccEEEEEcC-CCeEEEEECCCCeEEEEecc
Q psy4650          43 KDMIEYKISYQESSRVKAFNPIQ-VATLILKTLYGHEKGVNCVDYYHGGDKPYLISGAD-DRLVKIWDYQNKTCVQTLEG  120 (381)
Q Consensus        43 ~~~~~~~~s~~~d~~v~i~~~~~-~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~-d~~v~vwd~~~~~~~~~~~~  120 (381)
                      +...+++++++.||.++.|-+.. .....+.....|.+.|.+++.+.++-  ++.|.+. |..++++|+.+-..+..++-
T Consensus        17 ~tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~--L~~Sv~d~Dhs~KvfDvEn~DminmiKL   94 (558)
T KOG0882|consen   17 PTKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGW--LFRSVEDPDHSVKVFDVENFDMINMIKL   94 (558)
T ss_pred             eehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccce--eEeeccCcccceeEEEeeccchhhhccc
Confidence            34477999999999999999865 23345556778999999999988775  6788777 99999999877554433321


Q ss_pred             C--CCCEEEEEEecCCC--EEEEE-eCCCCEEEEeCCCCe--eeEEEecCCcceEEEEEcCCCCEEEEEeCCCeEEEEec
Q psy4650         121 H--GQNISAVCFHPELP--IVITG-SEDGSVRVWHSGTHR--LEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKVG  193 (381)
Q Consensus       121 ~--~~~v~~~~~~p~~~--~l~s~-~~d~~i~vwd~~~~~--~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~~  193 (381)
                      .  .+. -+...+|...  .++.+ -.++.+.++|-....  ....-.-|..+|.++.+.+-+..+.+....|.|.-|..
T Consensus        95 ~~lPg~-a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~  173 (558)
T KOG0882|consen   95 VDLPGF-AEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSA  173 (558)
T ss_pred             ccCCCc-eEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecC
Confidence            1  111 1122222211  33333 447899999977543  23334458999999999999999999988999999765


Q ss_pred             CCCceEEEecCCCEEEEEecCceeec---ccccCCccccccCCceEEeeehHHHHHhccCC
Q psy4650         194 REEPAVSMDVNGCKIIWARHSEVQQA---NLKTMPEVFENITAGVVLTLSVHVTIKYRLDI  251 (381)
Q Consensus       194 ~~~~~~~~d~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~dg~~l~~~~~d~~~~~~d~  251 (381)
                      .. +   +..-.+...|....+....   ...+....++++|+|..+..-..+.++++...
T Consensus       174 e~-~---~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~  230 (558)
T KOG0882|consen  174 EG-P---FQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVF  230 (558)
T ss_pred             CC-c---ccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEe
Confidence            53 0   1111233444443332111   11233333778888888877766665555443

>KOG2695|consensus

Probab=98.11  E-value=1.4e-05  Score=68.27  Aligned_cols=115  Identities=14%  Similarity=0.203  Sum_probs=86.9

Q ss_pred             ceEEEEEecCCeEEEecCCCc---cceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeE---EEEec
Q psy4650          46 IEYKISYQESSRVKAFNPIQV---ATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTC---VQTLE  119 (381)
Q Consensus        46 ~~~~~s~~~d~~v~i~~~~~~---~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~---~~~~~  119 (381)
                      .++++.|..+|.|..+|+...   ..-+.+.+ -|...|+|+..-.-.+ ++|.+.+.+|+|++||.+--++   +..+.
T Consensus       264 ~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl-yh~Ssvtslq~Lq~s~-q~LmaS~M~gkikLyD~R~~K~~~~V~qYe  341 (425)
T KOG2695|consen  264 DNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL-YHDSSVTSLQILQFSQ-QKLMASDMTGKIKLYDLRATKCKKSVMQYE  341 (425)
T ss_pred             CCeeEecccCCcEEEEEeeecccCCCcceEEE-EcCcchhhhhhhcccc-ceEeeccCcCceeEeeehhhhcccceeeee
Confidence            568899999999999998642   12233333 3788899987654222 3788889999999999987666   88888


Q ss_pred             cCCCCEEE--EEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEec
Q psy4650         120 GHGQNISA--VCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTY  162 (381)
Q Consensus       120 ~~~~~v~~--~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~  162 (381)
                      ||...-.-  +..++....++++|.|-..|||.++.|.++.+++.
T Consensus       342 GHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf  386 (425)
T KOG2695|consen  342 GHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPF  386 (425)
T ss_pred             cccccccccccccccccceEEEccCeeEEEEEecccCceeeccCC
Confidence            88653222  33456667888899999999999999999888764

>KOG4532|consensus

Probab=98.11  E-value=0.00046  Score=57.32  Aligned_cols=144  Identities=10%  Similarity=-0.044  Sum_probs=94.8

Q ss_pred             EEEEecCCeEEEecCCCccceeeEeecccccc--EEEEEeeeCCCccEEEEEcCCCeEEEEECCCCe--EEE-EeccCCC
Q psy4650          49 KISYQESSRVKAFNPIQVATLILKTLYGHEKG--VNCVDYYHGGDKPYLISGADDRLVKIWDYQNKT--CVQ-TLEGHGQ  123 (381)
Q Consensus        49 ~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~--v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~--~~~-~~~~~~~  123 (381)
                      +.-++.|.++++++++.......    -|...  +.+++++|++.  ++++.+....|..|.+....  ... .....++
T Consensus       131 ~~i~sndht~k~~~~~~~s~~~~----~h~~~~~~ns~~~snd~~--~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D  204 (344)
T KOG4532|consen  131 LNIASNDHTGKTMVVSGDSNKFA----VHNQNLTQNSLHYSNDPS--WGSSVGDSRRVFRYAIDDESEYIENIYEAPTSD  204 (344)
T ss_pred             eeeccCCcceeEEEEecCcccce----eeccccceeeeEEcCCCc--eEEEecCCCcceEEEeCCccceeeeeEecccCC
Confidence            34456666777777643222211    23332  77889999776  88999999999998886542  222 2233344


Q ss_pred             CEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeE-----EEecCCcceEEEEEcCCCC--EEEEEeCCCeEEEEecCCC
Q psy4650         124 NISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEI-----SLTYGLERVWTISSLKGSN--NVAIGYDEGSVLLKVGREE  196 (381)
Q Consensus       124 ~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~-----~~~~~~~~v~~v~~~~~~~--~l~~~~~dg~v~i~~~~~~  196 (381)
                      .=.+.+|+.....+|++..||++.|||++.-....     +-+.|.+.++.+.|++.|.  +|...-.=+.+.+      
T Consensus       205 ~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv------  278 (344)
T KOG4532|consen  205 HGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHV------  278 (344)
T ss_pred             CceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEE------
Confidence            55899999999999999999999999998543222     2245788999999998765  2333333344444      


Q ss_pred             ceEEEecCCCEE
Q psy4650         197 PAVSMDVNGCKI  208 (381)
Q Consensus       197 ~~~~~d~~~~~~  208 (381)
                          .|.++++-
T Consensus       279 ----~D~R~~~~  286 (344)
T KOG4532|consen  279 ----VDTRNYVN  286 (344)
T ss_pred             ----EEcccCce
Confidence                66665553

>KOG1354|consensus

Probab=98.10  E-value=1.9e-05  Score=67.50  Aligned_cols=151  Identities=11%  Similarity=0.093  Sum_probs=103.3

Q ss_pred             eeeecCCCceEEEEEecCCeEEEecCCCccc-eeeEeeccc-----cccEEEEEeeeCCCccEEEEEcCCCeEEEEECCC
Q psy4650          38 DITTNKDMIEYKISYQESSRVKAFNPIQVAT-LILKTLYGH-----EKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQN  111 (381)
Q Consensus        38 ~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~-~~~~~l~~h-----~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~  111 (381)
                      .|..+.+ .+.+++ ++|-.|.+|+++-... .-+.-++.|     +..|++..|+|... +.++-.+..|+|++-|++.
T Consensus       169 SIS~NsD-~Et~lS-ADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~c-n~f~YSSSKGtIrLcDmR~  245 (433)
T KOG1354|consen  169 SISVNSD-KETFLS-ADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHC-NVFVYSSSKGTIRLCDMRQ  245 (433)
T ss_pred             eeeecCc-cceEee-ccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHc-cEEEEecCCCcEEEeechh
Confidence            3444555 344454 4567899999864221 112233333     46789999999766 4788888999999999974


Q ss_pred             CeE----------------EEEeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeC-CCCeeeEEEecCCc---------
Q psy4650         112 KTC----------------VQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHS-GTHRLEISLTYGLE---------  165 (381)
Q Consensus       112 ~~~----------------~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~-~~~~~~~~~~~~~~---------  165 (381)
                      ...                ..-+.+-...|..+.|+++|+++++-.- -+|++||+ ...+++.+++.|..         
T Consensus       246 ~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lY  324 (433)
T KOG1354|consen  246 SALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLY  324 (433)
T ss_pred             hhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHh
Confidence            311                1112223346788999999999987643 58999999 45666666654422         


Q ss_pred             ------ceEEEEEcCCCCEEEEEeCCCeEEEEe
Q psy4650         166 ------RVWTISSLKGSNNVAIGYDEGSVLLKV  192 (381)
Q Consensus       166 ------~v~~v~~~~~~~~l~~~~~dg~v~i~~  192 (381)
                            .-..++|+.++.++.+|+-...++++.
T Consensus       325 EnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~  357 (433)
T KOG1354|consen  325 ENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFN  357 (433)
T ss_pred             hccchhheeEEEEcCCcceEecccccceEEEec
Confidence                  234688999999999999999999944

>KOG2315|consensus

Probab=98.07  E-value=0.00017  Score=65.76  Aligned_cols=150  Identities=13%  Similarity=0.059  Sum_probs=93.6

Q ss_pred             EEEEeeeCCCccEEE-EEcCC---------CeEEEEECCCCeEEEEeccCCCCEEEEEEecCCCEEEE--EeCCCCEEEE
Q psy4650          82 NCVDYYHGGDKPYLI-SGADD---------RLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPIVIT--GSEDGSVRVW  149 (381)
Q Consensus        82 ~~~~~~~~~~~~~l~-s~~~d---------~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s--~~~d~~i~vw  149 (381)
                      ..+.|.+.|+.-+++ +..-|         .++++.++.+..+...+. -.++|+++.|+|+++.++.  |-.--.+.|+
T Consensus       221 vqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~-k~GPVhdv~W~~s~~EF~VvyGfMPAkvtif  299 (566)
T KOG2315|consen  221 VQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLL-KEGPVHDVTWSPSGREFAVVYGFMPAKVTIF  299 (566)
T ss_pred             eEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecC-CCCCceEEEECCCCCEEEEEEecccceEEEE
Confidence            456787777642222 22223         367777776434444443 4689999999999986554  4557789999


Q ss_pred             eCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCC---CeEEEEecCCCceEEEecCCCEEEEEecCceeecccccCCc
Q psy4650         150 HSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDE---GSVLLKVGREEPAVSMDVNGCKIIWARHSEVQQANLKTMPE  226 (381)
Q Consensus       150 d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d---g~v~i~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~  226 (381)
                      |++. ..+..  ...+.-+++-|+|.|++++.++-+   |.+-+          ||..+.+.+-....        ....
T Consensus       300 nlr~-~~v~d--f~egpRN~~~fnp~g~ii~lAGFGNL~G~mEv----------wDv~n~K~i~~~~a--------~~tt  358 (566)
T KOG2315|consen  300 NLRG-KPVFD--FPEGPRNTAFFNPHGNIILLAGFGNLPGDMEV----------WDVPNRKLIAKFKA--------ANTT  358 (566)
T ss_pred             cCCC-CEeEe--CCCCCccceEECCCCCEEEEeecCCCCCceEE----------Eeccchhhcccccc--------CCce
Confidence            9863 33433  355677889999999998877643   45555          66655443322211        1122


Q ss_pred             cccccCCceEEeeehHH------HHHhccCCCc
Q psy4650         227 VFENITAGVVLTLSVHV------TIKYRLDISD  253 (381)
Q Consensus       227 ~~~~~~dg~~l~~~~~d------~~~~~~d~~~  253 (381)
                      .++|+|||++++++..-      +...+|+...
T Consensus       359 ~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG  391 (566)
T KOG2315|consen  359 VFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTG  391 (566)
T ss_pred             EEEEcCCCcEEEEEeccccEEecCCeEEEEecC
Confidence            37899999999877633      3344555443

>KOG2066|consensus

Probab=98.06  E-value=0.00022  Score=67.84  Aligned_cols=170  Identities=16%  Similarity=0.134  Sum_probs=104.8

Q ss_pred             ceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEEEeccCCCCE
Q psy4650          46 IEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNI  125 (381)
Q Consensus        46 ~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v  125 (381)
                      ..+++-|..+|.+++++-..   .. .+...|...      ..+|+  +++|||.||+|.|-.+-+.....++.- .-++
T Consensus        49 ~~~~~~GtH~g~v~~~~~~~---~~-~~~~~~s~~------~~~Ge--y~asCS~DGkv~I~sl~~~~~~~~~df-~rpi  115 (846)
T KOG2066|consen   49 DKFFALGTHRGAVYLTTCQG---NP-KTNFDHSSS------ILEGE--YVASCSDDGKVVIGSLFTDDEITQYDF-KRPI  115 (846)
T ss_pred             cceeeeccccceEEEEecCC---cc-ccccccccc------ccCCc--eEEEecCCCcEEEeeccCCccceeEec-CCcc
Confidence            45788888899999998643   22 333345443      33444  899999999999998888776666653 3588


Q ss_pred             EEEEEecC-----CCEEEEEeCCCCEEEEeCCC--CeeeEEEecCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCce
Q psy4650         126 SAVCFHPE-----LPIVITGSEDGSVRVWHSGT--HRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKVGREEPA  198 (381)
Q Consensus       126 ~~~~~~p~-----~~~l~s~~~d~~i~vwd~~~--~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~~~~~~~  198 (381)
                      .+++++|+     .+.+++||..| +.++.-+-  .+....+....+.|.+++|.  |+++|=++++|. ++        
T Consensus       116 ksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~Gv-~v--------  183 (846)
T KOG2066|consen  116 KSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDGV-KV--------  183 (846)
T ss_pred             eeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCCc-EE--------
Confidence            99999997     34889999888 77765431  11112344566788888885  556666655553 33        


Q ss_pred             EEEecCCCEEEEEecCceeecccccCCccccccCCceEEeeehHH
Q psy4650         199 VSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSVHV  243 (381)
Q Consensus       199 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~d  243 (381)
                        ||..+++.+-.+..+.......-......|.++ ..|+.|..+
T Consensus       184 --yd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~-~~LVIGW~d  225 (846)
T KOG2066|consen  184 --YDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDE-DRLVIGWGD  225 (846)
T ss_pred             --EeccccceeeccCCCCCCCCcccCCCceEecCC-CeEEEecCC
Confidence              666666655555444333222222222344433 344444443

>PRK05183 hscA chaperone protein HscA; Provisional

Probab=98.04  E-value=1.1e-05  Score=78.41  Aligned_cols=69  Identities=20%  Similarity=0.331  Sum_probs=61.0

Q ss_pred             HHhhhhhhhhHhhhccccceeeEeeccccCcceEEeecHHHHHHHHHHHHHHhHHHHHHHHHhCCCCcccccccc
Q psy4650         306 GLLTSFVQPCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIGGLLTSFVQPIEDVLSRSNITHDQINKFT  380 (381)
Q Consensus       306 ~l~~~~~~~~~~~Ls~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~v~  380 (381)
                      ..+.+.++.+|+.||....+.+.++.      +.+.++|.+||+++++++.++..+++++|++|++++++||.|+
T Consensus       265 ~~L~~~ae~aK~~LS~~~~~~i~i~~------~~~~itr~efe~l~~~l~~~~~~~i~~~L~~a~~~~~~i~~Vi  333 (616)
T PRK05183        265 RLLLDAARAAKEALSDADSVEVSVAL------WQGEITREQFNALIAPLVKRTLLACRRALRDAGVEADEVKEVV  333 (616)
T ss_pred             HHHHHHHHHHHHhcCCCceEEEEEec------CCCeEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCEEE
Confidence            34667889999999998888877752      4457999999999999999999999999999999999999986

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.04  E-value=0.00033  Score=64.60  Aligned_cols=72  Identities=13%  Similarity=0.079  Sum_probs=61.5

Q ss_pred             CCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCCCeEEEEecC
Q psy4650         121 HGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKVGR  194 (381)
Q Consensus       121 ~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~~~  194 (381)
                      ..+.|.|.+++|+...++.|+.||.|.+||...+.....  ...-.+..++|||+|..+++|+..|.+.+|+-.
T Consensus       258 L~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~--ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~A  329 (545)
T PF11768_consen  258 LPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA--KAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMA  329 (545)
T ss_pred             cCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee--eecccceEEEEcCCCcEEEEEcCCceEEEEEee
Confidence            567899999999999999999999999999987754433  234567889999999999999999999997743

>KOG0309|consensus

Probab=98.04  E-value=1.2e-05  Score=75.19  Aligned_cols=137  Identities=15%  Similarity=0.227  Sum_probs=99.0

Q ss_pred             eeeecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCC-eEEE
Q psy4650          38 DITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNK-TCVQ  116 (381)
Q Consensus        38 ~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~-~~~~  116 (381)
                      ++.+++....++++++-|..+..||+... ..++.........-..++|+-..-  .+...+....|.+||.+.| .++.
T Consensus       119 d~n~~~q~pdVlatcsvdt~vh~wd~rSp-~~p~ys~~~w~s~asqVkwnyk~p--~vlasshg~~i~vwd~r~gs~pl~  195 (1081)
T KOG0309|consen  119 DINFNPQHPDVLATCSVDTYVHAWDMRSP-HRPFYSTSSWRSAASQVKWNYKDP--NVLASSHGNDIFVWDLRKGSTPLC  195 (1081)
T ss_pred             ccccCCCCCcceeeccccccceeeeccCC-CcceeeeecccccCceeeecccCc--chhhhccCCceEEEeccCCCcceE
Confidence            45566777889999999999999999763 344555555556667888875322  3445566778999999876 5788


Q ss_pred             EeccCCCCEEEEEEecCC-CEEEEEeCCCCEEEEeCCCCeeeEE-EecCCcceEEEEEcCCCC
Q psy4650         117 TLEGHGQNISAVCFHPEL-PIVITGSEDGSVRVWHSGTHRLEIS-LTYGLERVWTISSLKGSN  177 (381)
Q Consensus       117 ~~~~~~~~v~~~~~~p~~-~~l~s~~~d~~i~vwd~~~~~~~~~-~~~~~~~v~~v~~~~~~~  177 (381)
                      .+++|...|..++|+... ..+.+++.|++|++||......... .......++.-.+.|-|.
T Consensus       196 s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~  258 (1081)
T KOG0309|consen  196 SLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGE  258 (1081)
T ss_pred             EecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCc
Confidence            999999999999998743 4788999999999999875443221 122345666677777554

>KOG1064|consensus

Probab=98.02  E-value=8.6e-06  Score=83.21  Aligned_cols=124  Identities=15%  Similarity=0.246  Sum_probs=93.4

Q ss_pred             EecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEc---CCCeEEEEECCCCe-EEEEeccCCCCEEE
Q psy4650          52 YQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGA---DDRLVKIWDYQNKT-CVQTLEGHGQNISA  127 (381)
Q Consensus        52 ~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~---~d~~v~vwd~~~~~-~~~~~~~~~~~v~~  127 (381)
                      +..||.+-+|...   .++....+.|........|.-  .  .+++++   .++.+.+||.--.. .-..-.+|.+++++
T Consensus      2269 ~d~dg~l~l~q~~---pk~~~s~qchnk~~~Df~Fi~--s--~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~ 2341 (2439)
T KOG1064|consen 2269 VDGDGDLSLWQAS---PKPYTSWQCHNKALSDFRFIG--S--LLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATV 2341 (2439)
T ss_pred             eccCCceeecccC---CcceeccccCCccccceeeee--h--hhhccccCCCCCcccchhcccCcccceeeeecCCCceE
Confidence            3446677777763   556667778888888888865  3  466654   47899999974322 11122789999999


Q ss_pred             EEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCCCeEEEEe
Q psy4650         128 VCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKV  192 (381)
Q Consensus       128 ~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~  192 (381)
                      +++.|..+.+++||.+|.|++||++..++...++.         ++ ...++.+|+..|.++||.
T Consensus      2342 l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~ 2396 (2439)
T KOG1064|consen 2342 LAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWR 2396 (2439)
T ss_pred             EEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh---------hh-hhheeeccCcccceEEEE
Confidence            99999999999999999999999998877666553         33 456889999999999944

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.02  E-value=0.00082  Score=57.31  Aligned_cols=181  Identities=13%  Similarity=0.117  Sum_probs=104.9

Q ss_pred             EEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEEEe-ccCC---C
Q psy4650          48 YKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTL-EGHG---Q  123 (381)
Q Consensus        48 ~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~-~~~~---~  123 (381)
                      .++.++.++.+..||+.+.  ..+..... .+.+...... .+.  .++.++.++.+..+|..+|+.+... ....   .
T Consensus        38 ~v~~~~~~~~l~~~d~~tG--~~~W~~~~-~~~~~~~~~~-~~~--~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~  111 (238)
T PF13360_consen   38 RVYVASGDGNLYALDAKTG--KVLWRFDL-PGPISGAPVV-DGG--RVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAG  111 (238)
T ss_dssp             EEEEEETTSEEEEEETTTS--EEEEEEEC-SSCGGSGEEE-ETT--EEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCS
T ss_pred             EEEEEcCCCEEEEEECCCC--CEEEEeec-cccccceeee-ccc--ccccccceeeeEecccCCcceeeeeccccccccc
Confidence            5666688999999998643  33333332 1111111222 223  4666668889999999999988874 3221   1


Q ss_pred             CEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEecCCcce----------EEEEEcCCCCEEEEEeCCCeEEEEec
Q psy4650         124 NISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERV----------WTISSLKGSNNVAIGYDEGSVLLKVG  193 (381)
Q Consensus       124 ~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v----------~~v~~~~~~~~l~~~~~dg~v~i~~~  193 (381)
                      ..........+..++.+..++.+..+|..+|+.+..........          ..-....++ .+..+..+|.      
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~------  184 (238)
T PF13360_consen  112 VRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGR------  184 (238)
T ss_dssp             TB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSS------
T ss_pred             cccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECC-EEEEEcCCCe------
Confidence            11222333347788888889999999999999998887643221          111111122 3333333333      


Q ss_pred             CCCceEEEecCCCEEEEEecCceeecccccCCccccccCCceEEeeehHHHHHhccCCCcC
Q psy4650         194 REEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSVHVTIKYRLDISDS  254 (381)
Q Consensus       194 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~d~~~~~~d~~~~  254 (381)
                          ++.+|..++..+|... ...   ....     ...++..+++...++..+.+|+...
T Consensus       185 ----~~~~d~~tg~~~w~~~-~~~---~~~~-----~~~~~~~l~~~~~~~~l~~~d~~tG  232 (238)
T PF13360_consen  185 ----VVAVDLATGEKLWSKP-ISG---IYSL-----PSVDGGTLYVTSSDGRLYALDLKTG  232 (238)
T ss_dssp             ----EEEEETTTTEEEEEEC-SS----ECEC-----EECCCTEEEEEETTTEEEEEETTTT
T ss_pred             ----EEEEECCCCCEEEEec-CCC---ccCC-----ceeeCCEEEEEeCCCEEEEEECCCC
Confidence                3447999999889544 211   1111     1245566666667777777777654

...

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.00  E-value=0.00065  Score=60.90  Aligned_cols=130  Identities=8%  Similarity=0.017  Sum_probs=97.7

Q ss_pred             EEEEEecCC-eEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEEEeccCCCCEE
Q psy4650          48 YKISYQESS-RVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNIS  126 (381)
Q Consensus        48 ~~~s~~~d~-~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~  126 (381)
                      -++-|-.|| .+-+|+...   ..+..+.+.-+.|.++..+|+|.  +++.+-....+.+.|+.+++....=+...+-|+
T Consensus       373 ~~vigt~dgD~l~iyd~~~---~e~kr~e~~lg~I~av~vs~dGK--~~vvaNdr~el~vididngnv~~idkS~~~lIt  447 (668)
T COG4946         373 GDVIGTNDGDKLGIYDKDG---GEVKRIEKDLGNIEAVKVSPDGK--KVVVANDRFELWVIDIDNGNVRLIDKSEYGLIT  447 (668)
T ss_pred             ceEEeccCCceEEEEecCC---ceEEEeeCCccceEEEEEcCCCc--EEEEEcCceEEEEEEecCCCeeEecccccceeE
Confidence            455566666 888999853   34455667778999999999887  688887788899999999986555555667899


Q ss_pred             EEEEecCCCEEEEEeCC----CCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEe
Q psy4650         127 AVCFHPELPIVITGSED----GSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGY  183 (381)
Q Consensus       127 ~~~~~p~~~~l~s~~~d----~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~  183 (381)
                      ...|||+++.+|.+-.+    ..|+++|+.+++...... ..+.=.+-+|.|++++|..-+
T Consensus       448 df~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT-~ta~DfsPaFD~d~ryLYfLs  507 (668)
T COG4946         448 DFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT-PTAYDFSPAFDPDGRYLYFLS  507 (668)
T ss_pred             EEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecC-CcccccCcccCCCCcEEEEEe
Confidence            99999999999987654    468999999887544332 333344568899999875544

>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins

Probab=97.99  E-value=1.7e-05  Score=77.62  Aligned_cols=75  Identities=29%  Similarity=0.484  Sum_probs=65.0

Q ss_pred             HHhhhhhhhhHhhhcc--ccceeeEeecccc-CcceEEeecHHHHHHHHHHHHHHhHHHHHHHHHhCCCCcccccccc
Q psy4650         306 GLLTSFVQPCMHVLST--LQSSNVFVESLYD-GLDFHHNVSRARFESLIGGLLTSFVQPIEDVLSRSNITHDQINKFT  380 (381)
Q Consensus       306 ~l~~~~~~~~~~~Ls~--~~~~~~~~~~~~~-~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~v~  380 (381)
                      ..+...++.+|+.|+.  .....+.++.+.+ +.++...++|++|+++++++++++..+++++|+++++++++|+.|+
T Consensus       256 ~~L~~~~e~~K~~Ls~~~~~~~~~~~~~~~~~~~~~~~~itr~~fe~l~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~  333 (602)
T PF00012_consen  256 ARLLEAAEKAKEQLSSNDNTEITISIESLYDDGEDFSITITREEFEELCEPLLERIIEPIEKALKDAGLKKEDIDSVL  333 (602)
T ss_dssp             HHHHHHHHHHHHHTTTSSSSEEEEEEEEEETTTEEEEEEEEHHHHHHHTHHHHHHTHHHHHHHHHHTT--GGGESEEE
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccceecccccccccccccccccccccccccccccceeE
Confidence            3456778899999999  5666777887777 7889999999999999999999999999999999999999999986

Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....

>PRK04043 tolB translocation protein TolB; Provisional

Probab=97.98  E-value=0.0016  Score=60.35  Aligned_cols=145  Identities=6%  Similarity=-0.055  Sum_probs=89.4

Q ss_pred             cEEEEEeeeCCCccEEE-EEc-CCCeEEEEECCCCeEEEEeccCCCCEEEEEEecCCCEEEEE-eC--CCCEEEEeCCCC
Q psy4650          80 GVNCVDYYHGGDKPYLI-SGA-DDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPIVITG-SE--DGSVRVWHSGTH  154 (381)
Q Consensus        80 ~v~~~~~~~~~~~~~l~-s~~-~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~-~~--d~~i~vwd~~~~  154 (381)
                      ......|+|+|+...+. +-. .+..|.++|+.+++...... ..+......|+|+|+.++.. +.  +..|.++|+.++
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g  267 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTK  267 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence            77889999998741222 222 24678899998887554443 44556778899999866543 33  456888898887


Q ss_pred             eeeEEEecCCcceEEEEEcCCCCEEEEEeCC-CeEEEEecCCCceEEEecCCCEEEEEecCceeecccccCCccccccCC
Q psy4650         155 RLEISLTYGLERVWTISSLKGSNNVAIGYDE-GSVLLKVGREEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITA  233 (381)
Q Consensus       155 ~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d-g~v~i~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  233 (381)
                      .... +..+........|+|+|+.++..+.. |..        .++.+|..++...--...        +... ..++||
T Consensus       268 ~~~~-LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~--------~Iy~~dl~~g~~~rlt~~--------g~~~-~~~SPD  329 (419)
T PRK04043        268 TLTQ-ITNYPGIDVNGNFVEDDKRIVFVSDRLGYP--------NIFMKKLNSGSVEQVVFH--------GKNN-SSVSTY  329 (419)
T ss_pred             cEEE-cccCCCccCccEECCCCCEEEEEECCCCCc--------eEEEEECCCCCeEeCccC--------CCcC-ceECCC
Confidence            6433 33333333456799999988777643 222        234477766553211110        1011 367899


Q ss_pred             ceEEeeehHH
Q psy4650         234 GVVLTLSVHV  243 (381)
Q Consensus       234 g~~l~~~~~d  243 (381)
                      |..++.....
T Consensus       330 G~~Ia~~~~~  339 (419)
T PRK04043        330 KNYIVYSSRE  339 (419)
T ss_pred             CCEEEEEEcC
Confidence            9998877643

>KOG1275|consensus

Probab=97.97  E-value=0.00011  Score=70.72  Aligned_cols=206  Identities=14%  Similarity=0.089  Sum_probs=129.7

Q ss_pred             ccccCCChhhHHHHhhhcceeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEE
Q psy4650          18 ALNTELTETDIETIVRETKVDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLIS   97 (381)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s   97 (381)
                      ++-++|+++.-.+...    .+..   ++..++.|+-...+..+|...........+  -.+.|.-++..    .+++.+
T Consensus       126 l~~~~~~~~s~~~M~~----~~~~---~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v--~a~~v~imR~N----nr~lf~  192 (1118)
T KOG1275|consen  126 LPVFDFTCPSMTKMAS----SLHM---GPSTLIMGGLQEKLIHIDLNTEKETRTTNV--SASGVTIMRYN----NRNLFC  192 (1118)
T ss_pred             ceeecccCCCHHHHHH----Hhcc---CCcceeecchhhheeeeecccceeeeeeec--cCCceEEEEec----CcEEEe
Confidence            4445566655433322    2222   233566666666777788754322222222  22346666653    238899


Q ss_pred             EcCCCeEEEEECCCCeEEEEeccCCCCEEEEEEecCCCEEEEEeC---------CCCEEEEeCCCCeeeEEEecCCcceE
Q psy4650          98 GADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPIVITGSE---------DGSVRVWHSGTHRLEISLTYGLERVW  168 (381)
Q Consensus        98 ~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~---------d~~i~vwd~~~~~~~~~~~~~~~~v~  168 (381)
                      |...|+|.+-|..+-+.+.++..|++.+..+.  -.|+.|++||.         |..|+|||++.-+.+.-+..+.++ .
T Consensus       193 G~t~G~V~LrD~~s~~~iht~~aHs~siSDfD--v~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~  269 (1118)
T KOG1275|consen  193 GDTRGTVFLRDPNSFETIHTFDAHSGSISDFD--VQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-Q  269 (1118)
T ss_pred             ecccceEEeecCCcCceeeeeeccccceeeee--ccCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-h
Confidence            99999999999999999999999999887664  46888888864         778999999987766555433332 3


Q ss_pred             EEEEcCC-CCEEEEEeCCCeEEEEecCCCceEEEecCC-CEEEEEecCceeecc-cccCCccccccCCceEEeeehHHHH
Q psy4650         169 TISSLKG-SNNVAIGYDEGSVLLKVGREEPAVSMDVNG-CKIIWARHSEVQQAN-LKTMPEVFENITAGVVLTLSVHVTI  245 (381)
Q Consensus       169 ~v~~~~~-~~~l~~~~~dg~v~i~~~~~~~~~~~d~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~dg~~l~~~~~d~~  245 (381)
                      -+.|+|. ...+++++..|.+.+          .|..+ +.+...    ....+ .......|++++.|..++.+..++.
T Consensus       270 flrf~Psl~t~~~V~S~sGq~q~----------vd~~~lsNP~~~----~~~v~p~~s~i~~fDiSsn~~alafgd~~g~  335 (1118)
T KOG1275|consen  270 FLRFHPSLTTRLAVTSQSGQFQF----------VDTATLSNPPAG----VKMVNPNGSGISAFDISSNGDALAFGDHEGH  335 (1118)
T ss_pred             hhhhcccccceEEEEecccceee----------ccccccCCCccc----eeEEccCCCcceeEEecCCCceEEEecccCc
Confidence            4667776 457888888888887          33110 000000    00001 1111122678899999999999999


Q ss_pred             HhccCCCc
Q psy4650         246 KYRLDISD  253 (381)
Q Consensus       246 ~~~~d~~~  253 (381)
                      ++.|....
T Consensus       336 v~~wa~~~  343 (1118)
T KOG1275|consen  336 VNLWADRP  343 (1118)
T ss_pred             EeeecCCC
Confidence            99887443

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=97.96  E-value=0.0025  Score=57.00  Aligned_cols=102  Identities=12%  Similarity=0.022  Sum_probs=74.2

Q ss_pred             CeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEc---------CCCeEEEEECCCCeEEEEeccCCC---
Q psy4650          56 SRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGA---------DDRLVKIWDYQNKTCVQTLEGHGQ---  123 (381)
Q Consensus        56 ~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~---------~d~~v~vwd~~~~~~~~~~~~~~~---  123 (381)
                      ++|.+.|...  ...+.++..-..+- .+ ++|++.. +.++.+         .+..|.+||..+++.+..+.-...   
T Consensus        27 ~~v~ViD~~~--~~v~g~i~~G~~P~-~~-~spDg~~-lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~  101 (352)
T TIGR02658        27 TQVYTIDGEA--GRVLGMTDGGFLPN-PV-VASDGSF-FAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRF  101 (352)
T ss_pred             ceEEEEECCC--CEEEEEEEccCCCc-ee-ECCCCCE-EEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchh
Confidence            7899999863  44555555322222 24 8998874 444555         689999999999999888764222   


Q ss_pred             ----CEEEEEEecCCCEEEEEe-C-CCCEEEEeCCCCeeeEEEec
Q psy4650         124 ----NISAVCFHPELPIVITGS-E-DGSVRVWHSGTHRLEISLTY  162 (381)
Q Consensus       124 ----~v~~~~~~p~~~~l~s~~-~-d~~i~vwd~~~~~~~~~~~~  162 (381)
                          .-..++++|+|++++... . +..|.+.|+.+++.+..+..
T Consensus       102 ~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~v  146 (352)
T TIGR02658       102 LVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDV  146 (352)
T ss_pred             hccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeC
Confidence                234788999999887665 3 78999999999998887764

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=97.95  E-value=8.9e-05  Score=68.25  Aligned_cols=76  Identities=18%  Similarity=0.324  Sum_probs=62.4

Q ss_pred             cccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEEEeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCe
Q psy4650          76 GHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHR  155 (381)
Q Consensus        76 ~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~  155 (381)
                      .....|.|++++|+.+  .++.|..||+|.+||...+..... + +.-....++|||+|..++.|+..|.+.+||+.-..
T Consensus       257 pL~s~v~~ca~sp~E~--kLvlGC~DgSiiLyD~~~~~t~~~-k-a~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALsp  332 (545)
T PF11768_consen  257 PLPSQVICCARSPSED--KLVLGCEDGSIILYDTTRGVTLLA-K-AEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSP  332 (545)
T ss_pred             ecCCcceEEecCcccc--eEEEEecCCeEEEEEcCCCeeeee-e-ecccceEEEEcCCCcEEEEEcCCceEEEEEeecCc
Confidence            4667899999999877  799999999999999977743322 2 33456899999999999999999999999987443

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=97.94  E-value=0.0064  Score=52.88  Aligned_cols=108  Identities=11%  Similarity=0.078  Sum_probs=75.1

Q ss_pred             EEEEeeeCCCccEEEEEcC-CCeEEEEECCC-CeE---EEEeccCCCC----------EEEEEEecCCCEEEEEeC-CCC
Q psy4650          82 NCVDYYHGGDKPYLISGAD-DRLVKIWDYQN-KTC---VQTLEGHGQN----------ISAVCFHPELPIVITGSE-DGS  145 (381)
Q Consensus        82 ~~~~~~~~~~~~~l~s~~~-d~~v~vwd~~~-~~~---~~~~~~~~~~----------v~~~~~~p~~~~l~s~~~-d~~  145 (381)
                      ..+++++++.  +++++.. -|.|.++-+.. |..   +..+ .|.+.          +++..+.|++++++++.- --.
T Consensus        92 ~yvsvd~~g~--~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~-~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dr  168 (346)
T COG2706          92 CYVSVDEDGR--FVFVANYHSGSVSVYPLQADGSLQPVVQVV-KHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDR  168 (346)
T ss_pred             eEEEECCCCC--EEEEEEccCceEEEEEcccCCccccceeee-ecCCCCCCccccCCccceeeeCCCCCEEEEeecCCce
Confidence            6677877665  7777654 57899988855 332   2222 25444          899999999998887743 236


Q ss_pred             EEEEeCCCCeeeEEEe---cCCcceEEEEEcCCCCEEEEEe-CCCeEEEEe
Q psy4650         146 VRVWHSGTHRLEISLT---YGLERVWTISSLKGSNNVAIGY-DEGSVLLKV  192 (381)
Q Consensus       146 i~vwd~~~~~~~~~~~---~~~~~v~~v~~~~~~~~l~~~~-~dg~v~i~~  192 (381)
                      |.+|++..|.+...-.   ......+.+.|+|++++..+.+ -+++|.+|.
T Consensus       169 i~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~  219 (346)
T COG2706         169 IFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLE  219 (346)
T ss_pred             EEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEE
Confidence            8999999776543221   2445678999999999876655 478888855

>KOG2041|consensus

Probab=97.86  E-value=5.7e-05  Score=70.73  Aligned_cols=144  Identities=14%  Similarity=0.128  Sum_probs=104.9

Q ss_pred             ceEEEEEecCCeEEEecCCCccc-------------eeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCC
Q psy4650          46 IEYKISYQESSRVKAFNPIQVAT-------------LILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNK  112 (381)
Q Consensus        46 ~~~~~s~~~d~~v~i~~~~~~~~-------------~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~  112 (381)
                      ..|++.|+.||.+++..+.+...             ..-++|.||.+.|.-+.|+...+  .|-+...+|.|.+|-+-.|
T Consensus        26 ~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~Q--KLTtSDt~GlIiVWmlykg  103 (1189)
T KOG2041|consen   26 SGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQ--KLTTSDTSGLIIVWMLYKG  103 (1189)
T ss_pred             CCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccc--cccccCCCceEEEEeeecc
Confidence            56999999999999997643211             12356889999999999986554  6889999999999988665


Q ss_pred             eEEEE-ec-cCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCCCeEEE
Q psy4650         113 TCVQT-LE-GHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLL  190 (381)
Q Consensus       113 ~~~~~-~~-~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i  190 (381)
                      .-... +. -..+.|.+++|+.+|..+...-.||.|.+=.+.+.+. +...........+.|+++...+..+-.+|.+++
T Consensus       104 sW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRI-wgKeLkg~~l~hv~ws~D~~~~Lf~~ange~hl  182 (1189)
T KOG2041|consen  104 SWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRI-WGKELKGQLLAHVLWSEDLEQALFKKANGETHL  182 (1189)
T ss_pred             cHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeecccee-cchhcchheccceeecccHHHHHhhhcCCcEEE
Confidence            42211 11 1345788999999999999888999988877764432 211111223457899999988888888888888


Q ss_pred             Ee
Q psy4650         191 KV  192 (381)
Q Consensus       191 ~~  192 (381)
                      ++
T Consensus       183 yd  184 (1189)
T KOG2041|consen  183 YD  184 (1189)
T ss_pred             ec
Confidence            55

>KOG4649|consensus

Probab=97.81  E-value=0.012  Score=49.08  Aligned_cols=128  Identities=13%  Similarity=0.065  Sum_probs=87.4

Q ss_pred             ecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEEEecc
Q psy4650          41 TNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEG  120 (381)
Q Consensus        41 ~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~  120 (381)
                      ..++...+++.|+..+.+.--|+...+ ..-..+-  ..++.+-+.- -|+  +++.|...|.+.+.+.++|.....+..
T Consensus        18 V~~dskT~v~igSHs~~~~avd~~sG~-~~We~il--g~RiE~sa~v-vgd--fVV~GCy~g~lYfl~~~tGs~~w~f~~   91 (354)
T KOG4649|consen   18 VCNDSKTLVVIGSHSGIVIAVDPQSGN-LIWEAIL--GVRIECSAIV-VGD--FVVLGCYSGGLYFLCVKTGSQIWNFVI   91 (354)
T ss_pred             EecCCceEEEEecCCceEEEecCCCCc-EEeehhh--CceeeeeeEE-ECC--EEEEEEccCcEEEEEecchhheeeeee
Confidence            344557789999999999999986422 2222222  3455554443 234  789999999999999999987777764


Q ss_pred             CCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEecCCcceEEEEEcC
Q psy4650         121 HGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLK  174 (381)
Q Consensus       121 ~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~  174 (381)
                      -..-=......+++..+..|+.|++....|.++...++..+.......+-+..|
T Consensus        92 ~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~  145 (354)
T KOG4649|consen   92 LETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAP  145 (354)
T ss_pred             hhhhccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecC
Confidence            332213344577899999999999999999999888887665433333333334

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=97.81  E-value=0.0016  Score=55.54  Aligned_cols=144  Identities=15%  Similarity=0.134  Sum_probs=88.8

Q ss_pred             CCeEEEecCCCccceeeEeecc-c-cccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEEEeccCCCCEEEEEEec
Q psy4650          55 SSRVKAFNPIQVATLILKTLYG-H-EKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHP  132 (381)
Q Consensus        55 d~~v~i~~~~~~~~~~~~~l~~-h-~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~p  132 (381)
                      +|+|..||+..  ...+....- . .....+..+ +++.  .++.++.++.+..||..+|+.+..+... ..+...- ..
T Consensus         2 ~g~l~~~d~~t--G~~~W~~~~~~~~~~~~~~~~-~~~~--~v~~~~~~~~l~~~d~~tG~~~W~~~~~-~~~~~~~-~~   74 (238)
T PF13360_consen    2 DGTLSALDPRT--GKELWSYDLGPGIGGPVATAV-PDGG--RVYVASGDGNLYALDAKTGKVLWRFDLP-GPISGAP-VV   74 (238)
T ss_dssp             TSEEEEEETTT--TEEEEEEECSSSCSSEEETEE-EETT--EEEEEETTSEEEEEETTTSEEEEEEECS-SCGGSGE-EE
T ss_pred             CCEEEEEECCC--CCEEEEEECCCCCCCccceEE-EeCC--EEEEEcCCCEEEEEECCCCCEEEEeecc-cccccee-ee
Confidence            56777888753  333333321 0 122221122 2333  5777789999999999999988777642 2211111 22


Q ss_pred             CCCEEEEEeCCCCEEEEeCCCCeeeEEE-ecCC---cceEEEEEcCCCCEEEEEeCCCeEEEEecCCCceEEEecCCCEE
Q psy4650         133 ELPIVITGSEDGSVRVWHSGTHRLEISL-TYGL---ERVWTISSLKGSNNVAIGYDEGSVLLKVGREEPAVSMDVNGCKI  208 (381)
Q Consensus       133 ~~~~l~s~~~d~~i~vwd~~~~~~~~~~-~~~~---~~v~~v~~~~~~~~l~~~~~dg~v~i~~~~~~~~~~~d~~~~~~  208 (381)
                      .+..++.++.++.+..+|..+|+.++.. ....   ...........+..++.+..++.+..          +|..+|..
T Consensus        75 ~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~----------~d~~tG~~  144 (238)
T PF13360_consen   75 DGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVA----------LDPKTGKL  144 (238)
T ss_dssp             ETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEE----------EETTTTEE
T ss_pred             cccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEE----------EecCCCcE
Confidence            4555666667889999999999999884 3221   11122222223677777877888877          99999999


Q ss_pred             EEEecCc
Q psy4650         209 IWARHSE  215 (381)
Q Consensus       209 ~~~~~~~  215 (381)
                      +|.....
T Consensus       145 ~w~~~~~  151 (238)
T PF13360_consen  145 LWKYPVG  151 (238)
T ss_dssp             EEEEESS
T ss_pred             EEEeecC
Confidence            9997653

...

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=97.81  E-value=0.00092  Score=67.84  Aligned_cols=131  Identities=10%  Similarity=0.018  Sum_probs=85.2

Q ss_pred             EEEEEecCCeEEEe----cCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCC------------
Q psy4650          48 YKISYQESSRVKAF----NPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQN------------  111 (381)
Q Consensus        48 ~~~s~~~d~~v~i~----~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~------------  111 (381)
                      -++.+..+|.|.++    ++......++..   -...|.+++||||++  .++....++++.+..-.=            
T Consensus        89 ~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~---vd~GI~a~~WSPD~E--lla~vT~~~~l~~mt~~fd~i~E~~l~~~~  163 (928)
T PF04762_consen   89 SLCIALASGDIILVREDPDPDEDEIEIVGS---VDSGILAASWSPDEE--LLALVTGEGNLLLMTRDFDPISEVPLDSDD  163 (928)
T ss_pred             cEEEEECCceEEEEEccCCCCCceeEEEEE---EcCcEEEEEECCCcC--EEEEEeCCCEEEEEeccceEEEEeecCccc
Confidence            45566677888888    654433333333   357899999999988  777777788887753210            


Q ss_pred             -----------CeEEEEecc------------------------CCCCEEEEEEecCCCEEEEEeC------CCCEEEEe
Q psy4650         112 -----------KTCVQTLEG------------------------HGQNISAVCFHPELPIVITGSE------DGSVRVWH  150 (381)
Q Consensus       112 -----------~~~~~~~~~------------------------~~~~v~~~~~~p~~~~l~s~~~------d~~i~vwd  150 (381)
                                 |+....|+|                        +...-..++|..||.++|..+-      -+.+|||+
T Consensus       164 ~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~  243 (928)
T PF04762_consen  164 FGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYS  243 (928)
T ss_pred             cCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEEC
Confidence                       110011111                        1224467899999999987753      26899999


Q ss_pred             CCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeC
Q psy4650         151 SGTHRLEISLTYGLERVWTISSLKGSNNVAIGYD  184 (381)
Q Consensus       151 ~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~  184 (381)
                      -. |.+..+-..-.+--.+++|.|.|+++|+...
T Consensus       244 Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~  276 (928)
T PF04762_consen  244 RE-GELQSTSEPVDGLEGALSWRPSGNLIASSQR  276 (928)
T ss_pred             CC-ceEEeccccCCCccCCccCCCCCCEEEEEEE
Confidence            76 5554444333334457899999999988764

>PRK11678 putative chaperone; Provisional

Probab=97.80  E-value=5.5e-05  Score=70.37  Aligned_cols=66  Identities=15%  Similarity=0.221  Sum_probs=58.9

Q ss_pred             HhhhhhhhhHhhhccccceeeEeeccccCcceEEeecHHHHHHHHHHHHHHhHHHHHHHHHhCCCCcc
Q psy4650         307 LLTSFVQPCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIGGLLTSFVQPIEDVLSRSNITHD  374 (381)
Q Consensus       307 l~~~~~~~~~~~Ls~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~l~~~~~~~~  374 (381)
                      .+.+.+|.+|+.||....+.+.++.+..  .+...++|++||+++++++++++.+++++|++|+++++
T Consensus       336 ~L~~~aE~aK~~LS~~~~a~i~~~~~~~--~~~~~ItR~efe~ii~~~l~ri~~~i~~~L~~a~~~~d  401 (450)
T PRK11678        336 RLVRSAEEAKIALSDQAETRASLDFISD--GLATEISQQGLEEAISQPLARILELVQLALDQAQVKPD  401 (450)
T ss_pred             HHHHHHHHHHHHcCCCCceEEEecccCC--CcceeeCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence            4567899999999999999999987754  46789999999999999999999999999999998753

>KOG1912|consensus

Probab=97.73  E-value=0.00015  Score=68.63  Aligned_cols=122  Identities=15%  Similarity=0.215  Sum_probs=95.3

Q ss_pred             cEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEEEeccCCCCEEEEEEecCC------------CEEEEEeCCCCEE
Q psy4650          80 GVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPEL------------PIVITGSEDGSVR  147 (381)
Q Consensus        80 ~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~p~~------------~~l~s~~~d~~i~  147 (381)
                      .-.++.|+|.|   ++|-|+ ...|.+-|..+.+.++.+.-|...|+.+.|.|..            ..+|++...|.|.
T Consensus        17 N~~A~Dw~~~G---LiAygs-hslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIi   92 (1062)
T KOG1912|consen   17 NRNAADWSPSG---LIAYGS-HSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRII   92 (1062)
T ss_pred             cccccccCccc---eEEEec-CceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEE
Confidence            35678898866   465554 5677888999999999999999999999998731            1567777899999


Q ss_pred             EEeCCCCeeeEEEecCCcceEEEEEcCC---C-CEEEEEeCCCeEEEEecCCCceEEEecCCCEEEEEecCc
Q psy4650         148 VWHSGTHRLEISLTYGLERVWTISSLKG---S-NNVAIGYDEGSVLLKVGREEPAVSMDVNGCKIIWARHSE  215 (381)
Q Consensus       148 vwd~~~~~~~~~~~~~~~~v~~v~~~~~---~-~~l~~~~~dg~v~i~~~~~~~~~~~d~~~~~~~~~~~~~  215 (381)
                      +||...+.....+..+...+..++|.+.   + ..|++-.....+.+          |+.++|..+|.....
T Consensus        93 l~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvL----------wntdtG~k~Wk~~ys  154 (1062)
T KOG1912|consen   93 LVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVL----------WNTDTGEKFWKYDYS  154 (1062)
T ss_pred             EEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEE----------EEccCCceeeccccC
Confidence            9999999888888888899999999864   3 34555555556666          888899999986544

>KOG2066|consensus

Probab=97.70  E-value=0.001  Score=63.46  Aligned_cols=134  Identities=11%  Similarity=0.120  Sum_probs=91.9

Q ss_pred             CceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeC---CCccEEEEEcCCCeEEEEECCCC--eEEEEec
Q psy4650          45 MIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHG---GDKPYLISGADDRLVKIWDYQNK--TCVQTLE  119 (381)
Q Consensus        45 ~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~---~~~~~l~s~~~d~~v~vwd~~~~--~~~~~~~  119 (381)
                      .++|+++|+.||+|.|..+.+.......   .-..++.+++++|+   .+...+++||.-| +.++.-.--  +....+.
T Consensus        82 ~Gey~asCS~DGkv~I~sl~~~~~~~~~---df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~  157 (846)
T KOG2066|consen   82 EGEYVASCSDDGKVVIGSLFTDDEITQY---DFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLS  157 (846)
T ss_pred             CCceEEEecCCCcEEEeeccCCccceeE---ecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeee
Confidence            4889999999999999987643333222   33578999999997   2223688999888 666542211  1112355


Q ss_pred             cCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEecCCcc------eEEEEEcCCCCEEEEEeCCC
Q psy4650         120 GHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLER------VWTISSLKGSNNVAIGYDEG  186 (381)
Q Consensus       120 ~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~------v~~v~~~~~~~~l~~~~~dg  186 (381)
                      .-.++|.++.|.  |.++|-++.+| |+|||..+++.+..++.....      ...+.|.++. .|+.|..|.
T Consensus       158 ~~eG~I~~i~W~--g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~-~LVIGW~d~  226 (846)
T KOG2066|consen  158 EGEGPIHSIKWR--GNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDED-RLVIGWGDS  226 (846)
T ss_pred             cCccceEEEEec--CcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCC-eEEEecCCe
Confidence            567899999995  77888888777 899999998887776543333      3456776654 455565543

>smart00320 WD40 WD40 repeats

Probab=97.69  E-value=0.00014  Score=41.40  Aligned_cols=38  Identities=29%  Similarity=0.727  Sum_probs=33.8

Q ss_pred             eEEEEeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEe
Q psy4650         113 TCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWH  150 (381)
Q Consensus       113 ~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd  150 (381)
                      .+...+..|...|.++.|+|.+..+++++.|+.+++||
T Consensus         3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            45666778889999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG1645|consensus

Probab=97.67  E-value=0.00013  Score=63.79  Aligned_cols=82  Identities=16%  Similarity=0.223  Sum_probs=70.0

Q ss_pred             EeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEEEeccCCCCEEEEEEecCCC-EEEEEeCCCCEEEEe
Q psy4650          72 KTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELP-IVITGSEDGSVRVWH  150 (381)
Q Consensus        72 ~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~p~~~-~l~s~~~d~~i~vwd  150 (381)
                      ..+.+|...|.+++|+|..++ ++..++.+.+|++.|+.+..+...+..| ..+++.+|..+.. ++..|...|.|.|||
T Consensus       187 q~lp~~g~~IrdlafSp~~~G-Ll~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD  264 (463)
T KOG1645|consen  187 QILPGEGSFIRDLAFSPFNEG-LLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYD  264 (463)
T ss_pred             hcccccchhhhhhccCccccc-eeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEE
Confidence            345678889999999997764 7889999999999999999988888877 7899999998776 666777799999999


Q ss_pred             CCCCe
Q psy4650         151 SGTHR  155 (381)
Q Consensus       151 ~~~~~  155 (381)
                      ++..+
T Consensus       265 ~R~~~  269 (463)
T KOG1645|consen  265 MRQPE  269 (463)
T ss_pred             ccCCC
Confidence            98543

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=97.64  E-value=0.011  Score=53.86  Aligned_cols=131  Identities=10%  Similarity=0.018  Sum_probs=81.7

Q ss_pred             CeEEEEECCCCeEEEEeccCCCCEEEEEEecCCCEEEEEe--CCCCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEE
Q psy4650         102 RLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPIVITGS--EDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNV  179 (381)
Q Consensus       102 ~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~--~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l  179 (381)
                      ..+.++++.... +....+-.++|+..+|+|.+..++..+  .+-.+.++|+++. ...  ......-..+.|+|.++++
T Consensus       255 snLyl~~~~e~~-i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~--~~Pe~~rNT~~fsp~~r~i  330 (561)
T COG5354         255 SNLYLLRITERS-IPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRF--YFPEQKRNTIFFSPHERYI  330 (561)
T ss_pred             ceEEEEeecccc-cceeccccccceeeeecccCCceeEEecccccceeecccccc-eEE--ecCCcccccccccCcccEE
Confidence            456677776333 233335678999999999998766544  5888999999876 333  2334555678899999988


Q ss_pred             EEEeCC---CeEEEEecCCCceEEEecCCCEEEEEecCceeecccccCCccccccCCceEEeeehH------HHHHhccC
Q psy4650         180 AIGYDE---GSVLLKVGREEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSVH------VTIKYRLD  250 (381)
Q Consensus       180 ~~~~~d---g~v~i~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~------d~~~~~~d  250 (381)
                      +.++-|   |.+.+          ||+.+....-..       -.......++|+|||+++.+...      |..+.+|+
T Consensus       331 l~agF~nl~gni~i----------~~~~~rf~~~~~-------~~~~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~  393 (561)
T COG5354         331 LFAGFDNLQGNIEI----------FDPAGRFKVAGA-------FNGLNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWD  393 (561)
T ss_pred             EEecCCccccceEE----------eccCCceEEEEE-------eecCCceEeeccCCceEEEecCCCcccccCcceEEEE
Confidence            876643   44555          666544433211       11111222578899998887653      23345565


Q ss_pred             CCc
Q psy4650         251 ISD  253 (381)
Q Consensus       251 ~~~  253 (381)
                      +..
T Consensus       394 v~g  396 (561)
T COG5354         394 VYG  396 (561)
T ss_pred             ecC
Confidence            543

>KOG2314|consensus

Probab=97.62  E-value=0.00088  Score=61.20  Aligned_cols=141  Identities=13%  Similarity=0.162  Sum_probs=92.1

Q ss_pred             EEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEEEeccCCCCEEEEEEecCCCEEEEEeC-----------CCCEEEE
Q psy4650          81 VNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPIVITGSE-----------DGSVRVW  149 (381)
Q Consensus        81 v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~-----------d~~i~vw  149 (381)
                      =+-+.|||-|.  ||+|--.-| |.+|--.+-..++.|. |. .|.-+.|||...+|++-+.           ...++||
T Consensus       213 etyv~wSP~GT--YL~t~Hk~G-I~lWGG~~f~r~~RF~-Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IW  287 (698)
T KOG2314|consen  213 ETYVRWSPKGT--YLVTFHKQG-IALWGGESFDRIQRFY-HP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIW  287 (698)
T ss_pred             eeeEEecCCce--EEEEEeccc-eeeecCccHHHHHhcc-CC-CceeeecCCccceEEEecCCccccCcccCCCceEEEE
Confidence            45789999887  888865444 5577765554455554 54 6899999999999987543           2579999


Q ss_pred             eCCCCeeeEEEecC--Ccce-EEEEEcCCCCEEEEEeCCCeEEEEecCCCceEEEecCCCEEEEEecCceeecccccCCc
Q psy4650         150 HSGTHRLEISLTYG--LERV-WTISSLKGSNNVAIGYDEGSVLLKVGREEPAVSMDVNGCKIIWARHSEVQQANLKTMPE  226 (381)
Q Consensus       150 d~~~~~~~~~~~~~--~~~v-~~v~~~~~~~~l~~~~~dg~v~i~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~  226 (381)
                      |+.+|....++...  ...+ .-..|+.+++++|.-..++ +.+          |+.-+-. +...    ....+.++..
T Consensus       288 DI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~s-isI----------yEtpsf~-lld~----Kslki~gIr~  351 (698)
T KOG2314|consen  288 DIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNS-ISI----------YETPSFM-LLDK----KSLKISGIRD  351 (698)
T ss_pred             EccccchhcceeccCCCccccceEEeccCCceeEEeccce-EEE----------EecCcee-eecc----cccCCccccC
Confidence            99999998888762  2222 2367999999998877643 444          4443211 1111    1123333333


Q ss_pred             cccccCCceEEeeehHH
Q psy4650         227 VFENITAGVVLTLSVHV  243 (381)
Q Consensus       227 ~~~~~~dg~~l~~~~~d  243 (381)
                       |+|+|.+..|+.-...
T Consensus       352 -FswsP~~~llAYwtpe  367 (698)
T KOG2314|consen  352 -FSWSPTSNLLAYWTPE  367 (698)
T ss_pred             -cccCCCcceEEEEccc
Confidence             6778888777765543

>KOG4640|consensus

Probab=97.58  E-value=0.00041  Score=64.34  Aligned_cols=93  Identities=13%  Similarity=0.223  Sum_probs=75.0

Q ss_pred             ccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEEEeccCCCCEE-EEEEecCCCEEEEEeCCCCEEEEeCCCCeee
Q psy4650          79 KGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNIS-AVCFHPELPIVITGSEDGSVRVWHSGTHRLE  157 (381)
Q Consensus        79 ~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~-~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~  157 (381)
                      -.+.-+.|+|.-+  ++|.+..+|.|-+.... .+.+.++..|...++ +++|.|||+.+|.|-.||+|++-|+.+|..+
T Consensus        21 ~~i~~~ewnP~~d--LiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l   97 (665)
T KOG4640|consen   21 INIKRIEWNPKMD--LIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRL   97 (665)
T ss_pred             cceEEEEEcCccc--hhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCce
Confidence            3566778888555  89999999999998887 666888887877777 9999999999999999999999999998887


Q ss_pred             EEEec-CCcceEEEEEcC
Q psy4650         158 ISLTY-GLERVWTISSLK  174 (381)
Q Consensus       158 ~~~~~-~~~~v~~v~~~~  174 (381)
                      ..... ....|.++.|.+
T Consensus        98 ~~~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   98 VSFLFSVETDISKGIWDR  115 (665)
T ss_pred             eccccccccchheeeccc
Confidence            76322 345667777753

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=97.57  E-value=0.028  Score=48.23  Aligned_cols=141  Identities=13%  Similarity=0.058  Sum_probs=85.2

Q ss_pred             eeecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEee-eCCCccEEEEEcCCCeEEEEECCCCeEEEE
Q psy4650          39 ITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYY-HGGDKPYLISGADDRLVKIWDYQNKTCVQT  117 (381)
Q Consensus        39 i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~-~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~  117 (381)
                      ++..+..+.+.++.-..+.|..|++...... ...+.    ...++.+. +++   .++.+...+. .++|..+++....
T Consensus         5 p~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~-~~~~~----~~~G~~~~~~~g---~l~v~~~~~~-~~~d~~~g~~~~~   75 (246)
T PF08450_consen    5 PVWDPRDGRLYWVDIPGGRIYRVDPDTGEVE-VIDLP----GPNGMAFDRPDG---RLYVADSGGI-AVVDPDTGKVTVL   75 (246)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTTTEEE-EEESS----SEEEEEEECTTS---EEEEEETTCE-EEEETTTTEEEEE
T ss_pred             eEEECCCCEEEEEEcCCCEEEEEECCCCeEE-EEecC----CCceEEEEccCC---EEEEEEcCce-EEEecCCCcEEEE
Confidence            4455544667777777889999998653221 12222    26777777 443   3555555444 4459988864333


Q ss_pred             ecc-----CCCCEEEEEEecCCCEEEEEeCC--------CCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEE-EEe
Q psy4650         118 LEG-----HGQNISAVCFHPELPIVITGSED--------GSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVA-IGY  183 (381)
Q Consensus       118 ~~~-----~~~~v~~~~~~p~~~~l~s~~~d--------~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~-~~~  183 (381)
                      ...     .......+++.|+|.+.++....        +.+..++.. ++...... .-...+.++|+|+++.|. +-+
T Consensus        76 ~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~~~~pNGi~~s~dg~~lyv~ds  153 (246)
T PF08450_consen   76 ADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-GLGFPNGIAFSPDGKTLYVADS  153 (246)
T ss_dssp             EEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-EESSEEEEEEETTSSEEEEEET
T ss_pred             eeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec-CcccccceEECCcchheeeccc
Confidence            322     23457889999999977766543        457777776 55433333 345678899999998765 445


Q ss_pred             CCCeEEE
Q psy4650         184 DEGSVLL  190 (381)
Q Consensus       184 ~dg~v~i  190 (381)
                      ..+.+..
T Consensus       154 ~~~~i~~  160 (246)
T PF08450_consen  154 FNGRIWR  160 (246)
T ss_dssp             TTTEEEE
T ss_pred             ccceeEE
Confidence            5556555

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=97.52  E-value=0.025  Score=47.87  Aligned_cols=162  Identities=9%  Similarity=0.059  Sum_probs=99.1

Q ss_pred             hHHHHhhhcceeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeecc-------ccccEEEEEeeeCCC----ccEE
Q psy4650          27 DIETIVRETKVDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYG-------HEKGVNCVDYYHGGD----KPYL   95 (381)
Q Consensus        27 ~~~~~~~~~~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~-------h~~~v~~~~~~~~~~----~~~l   95 (381)
                      ++.++...-=.++...++ ...++-+...|+|++||+..   ..+..+..       -...|.++.|.+...    ...|
T Consensus        37 qVpkD~~PQWRkl~WSpD-~tlLa~a~S~G~i~vfdl~g---~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~EL  112 (282)
T PF15492_consen   37 QVPKDPNPQWRKLAWSPD-CTLLAYAESTGTIRVFDLMG---SELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYEL  112 (282)
T ss_pred             ecCCCCCchheEEEECCC-CcEEEEEcCCCeEEEEeccc---ceeEEcCcccccCCccccceeeeEeeccccccccceeE
Confidence            444455545567888887 45788888899999999853   22333322       124566776654221    0134


Q ss_pred             EEEcCCCeEEEEECCCC-----eEEEE--ecc-CCCCEEEEEEecCCCEEEEEeC-CC----------CEEEEeCCCCee
Q psy4650          96 ISGADDRLVKIWDYQNK-----TCVQT--LEG-HGQNISAVCFHPELPIVITGSE-DG----------SVRVWHSGTHRL  156 (381)
Q Consensus        96 ~s~~~d~~v~vwd~~~~-----~~~~~--~~~-~~~~v~~~~~~p~~~~l~s~~~-d~----------~i~vwd~~~~~~  156 (381)
                      ..-..+|.++=+-+..+     .....  +.. +..+|.++.|+|..++|+.||. ..          -+.-|.+-++.+
T Consensus       113 lvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~P  192 (282)
T PF15492_consen  113 LVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSP  192 (282)
T ss_pred             EEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCC
Confidence            55566776665554221     22222  333 3678999999999887766654 11          245565432221


Q ss_pred             eEE---------------------E--------ecCCcceEEEEEcCCCCEEEEEeCCCeEEEEe
Q psy4650         157 EIS---------------------L--------TYGLERVWTISSLKGSNNVAIGYDEGSVLLKV  192 (381)
Q Consensus       157 ~~~---------------------~--------~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~  192 (381)
                      -..                     +        ....+.|..+..+|+|..|++.+.+|.+.+|.
T Consensus       193 yyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~  257 (282)
T PF15492_consen  193 YYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWE  257 (282)
T ss_pred             cEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEe
Confidence            110                     0        11245788999999999999999999999954

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=97.50  E-value=0.05  Score=46.65  Aligned_cols=159  Identities=12%  Similarity=0.090  Sum_probs=94.3

Q ss_pred             ceeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeec--c-ccccEEEEEeeeCCCccEEEEEcCC--------CeE
Q psy4650          36 KVDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLY--G-HEKGVNCVDYYHGGDKPYLISGADD--------RLV  104 (381)
Q Consensus        36 ~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~--~-h~~~v~~~~~~~~~~~~~l~s~~~d--------~~v  104 (381)
                      +.-+......+.++++. .. .+.++|+.......+....  . .....+.+++.|+|.  +.++....        |.+
T Consensus        42 ~~G~~~~~~~g~l~v~~-~~-~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~--ly~t~~~~~~~~~~~~g~v  117 (246)
T PF08450_consen   42 PNGMAFDRPDGRLYVAD-SG-GIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGN--LYVTDSGGGGASGIDPGSV  117 (246)
T ss_dssp             EEEEEEECTTSEEEEEE-TT-CEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS---EEEEEECCBCTTCGGSEEE
T ss_pred             CceEEEEccCCEEEEEE-cC-ceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCC--EEEEecCCCccccccccce
Confidence            45555552224455544 33 4556687654444444442  2 345688999999877  55554433        457


Q ss_pred             EEEECCCCeEEEEeccCCCCEEEEEEecCCCEEE-EEeCCCCEEEEeCCCCee-------eEEEecCCcceEEEEEcCCC
Q psy4650         105 KIWDYQNKTCVQTLEGHGQNISAVCFHPELPIVI-TGSEDGSVRVWHSGTHRL-------EISLTYGLERVWTISSLKGS  176 (381)
Q Consensus       105 ~vwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~-s~~~d~~i~vwd~~~~~~-------~~~~~~~~~~v~~v~~~~~~  176 (381)
                      ..++.. ++...... .-.....++|+|+++.|. +-+..+.|..+++.....       ...+.........+++..+|
T Consensus       118 ~~~~~~-~~~~~~~~-~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G  195 (246)
T PF08450_consen  118 YRIDPD-GKVTVVAD-GLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDG  195 (246)
T ss_dssp             EEEETT-SEEEEEEE-EESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS
T ss_pred             EEECCC-CeEEEEec-CcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCC
Confidence            777776 55433333 334568999999999665 556678888888853221       11222222347788999999


Q ss_pred             CEEEEEeCCCeEEEEecCCCceEEEecCCCEEEEE
Q psy4650         177 NNVAIGYDEGSVLLKVGREEPAVSMDVNGCKIIWA  211 (381)
Q Consensus       177 ~~l~~~~~dg~v~i~~~~~~~~~~~d~~~~~~~~~  211 (381)
                      ++.++....+.|.+          ++++ |.++-.
T Consensus       196 ~l~va~~~~~~I~~----------~~p~-G~~~~~  219 (246)
T PF08450_consen  196 NLWVADWGGGRIVV----------FDPD-GKLLRE  219 (246)
T ss_dssp             -EEEEEETTTEEEE----------EETT-SCEEEE
T ss_pred             CEEEEEcCCCEEEE----------ECCC-ccEEEE
Confidence            88777777888877          7776 444433

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG1832|consensus

Probab=97.48  E-value=8.1e-05  Score=71.41  Aligned_cols=135  Identities=16%  Similarity=0.119  Sum_probs=91.8

Q ss_pred             eeeecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCC-eEEEEECCC-CeEE
Q psy4650          38 DITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDR-LVKIWDYQN-KTCV  115 (381)
Q Consensus        38 ~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~-~v~vwd~~~-~~~~  115 (381)
                      ++.+..+ .+.++.|+..|.|++|+...  +.....+.+|..+|+-+.-+.+|+- .|.+++... -.-+|+..+ +.+.
T Consensus      1106 c~afs~~-~~hL~vG~~~Geik~~nv~s--G~~e~s~ncH~SavT~vePs~dgs~-~Ltsss~S~PlsaLW~~~s~~~~~ 1181 (1516)
T KOG1832|consen 1106 CIAFSGG-TNHLAVGSHAGEIKIFNVSS--GSMEESVNCHQSAVTLVEPSVDGST-QLTSSSSSSPLSALWDASSTGGPR 1181 (1516)
T ss_pred             eEEeecC-CceEEeeeccceEEEEEccC--ccccccccccccccccccccCCcce-eeeeccccCchHHHhccccccCcc
Confidence            3444433 66899999999999999973  4556778899999999988888873 344444443 456899864 3445


Q ss_pred             EEeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEE-ec---CCcceEEEEEcCCCCEEE
Q psy4650         116 QTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISL-TY---GLERVWTISSLKGSNNVA  180 (381)
Q Consensus       116 ~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~-~~---~~~~v~~v~~~~~~~~l~  180 (381)
                      .+|.+.    .++.|+.....-+.|.......+||+.++..+.++ .+   ..-.-+++.|+|+..++.
T Consensus      1182 Hsf~ed----~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl 1246 (1516)
T KOG1832|consen 1182 HSFDED----KAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL 1246 (1516)
T ss_pred             cccccc----ceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe
Confidence            555543    67888776554444555567899999998877663 21   222336778888876543

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=97.48  E-value=0.011  Score=54.45  Aligned_cols=146  Identities=12%  Similarity=0.133  Sum_probs=88.6

Q ss_pred             EEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEEEeccCCCCEEE
Q psy4650          48 YKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISA  127 (381)
Q Consensus        48 ~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~  127 (381)
                      .++.++.++.+..+|+.+  ...+....-......+...  ++.  .++.++.++.+..+|..+|+.+....... .+.+
T Consensus        67 ~v~v~~~~g~v~a~d~~t--G~~~W~~~~~~~~~~~p~v--~~~--~v~v~~~~g~l~ald~~tG~~~W~~~~~~-~~~~  139 (377)
T TIGR03300        67 KVYAADADGTVVALDAET--GKRLWRVDLDERLSGGVGA--DGG--LVFVGTEKGEVIALDAEDGKELWRAKLSS-EVLS  139 (377)
T ss_pred             EEEEECCCCeEEEEEccC--CcEeeeecCCCCcccceEE--cCC--EEEEEcCCCEEEEEECCCCcEeeeeccCc-eeec
Confidence            567777888999999764  2333332222221112222  233  57788889999999999998877665332 2221


Q ss_pred             EEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEecCCcceE-----EEEEcCCCCEEEEEeCCCeEEEEecCCCceEEEe
Q psy4650         128 VCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVW-----TISSLKGSNNVAIGYDEGSVLLKVGREEPAVSMD  202 (381)
Q Consensus       128 ~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~-----~v~~~~~~~~l~~~~~dg~v~i~~~~~~~~~~~d  202 (381)
                      .-.. .+..++.++.++.+..||..+|+.++..........     +....  +..+..+..+|.+..          +|
T Consensus       140 ~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~--~~~v~~~~~~g~v~a----------ld  206 (377)
T TIGR03300       140 PPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA--DGGVLVGFAGGKLVA----------LD  206 (377)
T ss_pred             CCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE--CCEEEEECCCCEEEE----------EE
Confidence            1111 244666677899999999999998887754322111     00111  124455555555544          89


Q ss_pred             cCCCEEEEEec
Q psy4650         203 VNGCKIIWARH  213 (381)
Q Consensus       203 ~~~~~~~~~~~  213 (381)
                      ..+|..+|...
T Consensus       207 ~~tG~~~W~~~  217 (377)
T TIGR03300       207 LQTGQPLWEQR  217 (377)
T ss_pred             ccCCCEeeeec
Confidence            99999999754

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>smart00320 WD40 WD40 repeats

Probab=97.39  E-value=0.00053  Score=38.86  Aligned_cols=37  Identities=46%  Similarity=0.815  Sum_probs=31.8

Q ss_pred             eeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEE
Q psy4650          70 ILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWD  108 (381)
Q Consensus        70 ~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd  108 (381)
                      ....+.+|...|.++.|++.+.  .+++++.|+.+++|+
T Consensus         4 ~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~d~~~~~~~   40 (40)
T smart00320        4 LLKTLKGHTGPVTSVAFSPDGK--YLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEecCCceeEEEECCCCC--EEEEecCCCeEEEcC
Confidence            4566678999999999998764  899999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=97.39  E-value=0.01  Score=54.59  Aligned_cols=132  Identities=11%  Similarity=0.050  Sum_probs=84.2

Q ss_pred             EEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEEEeccCCC-CEE
Q psy4650          48 YKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQ-NIS  126 (381)
Q Consensus        48 ~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~-~v~  126 (381)
                      .++.++.+|.+..||+...  ..+.....  ........  .+.  .++.++.+|.+..+|..+++.+........ ...
T Consensus       243 ~vy~~~~~g~l~a~d~~tG--~~~W~~~~--~~~~~p~~--~~~--~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~s  314 (377)
T TIGR03300       243 QVYAVSYQGRVAALDLRSG--RVLWKRDA--SSYQGPAV--DDN--RLYVTDADGVVVALDRRSGSELWKNDELKYRQLT  314 (377)
T ss_pred             EEEEEEcCCEEEEEECCCC--cEEEeecc--CCccCceE--eCC--EEEEECCCCeEEEEECCCCcEEEccccccCCccc
Confidence            5666778899999998642  23333321  11112222  223  577888999999999999987766532111 112


Q ss_pred             EEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCCCeEEE
Q psy4650         127 AVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLL  190 (381)
Q Consensus       127 ~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i  190 (381)
                      ....  .+..++.++.+|.+.++|..+|+.+..+..+...+..--...+ ..|..++.||.+..
T Consensus       315 sp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~~-~~l~v~~~dG~l~~  375 (377)
T TIGR03300       315 APAV--VGGYLVVGDFEGYLHWLSREDGSFVARLKTDGSGIASPPVVVG-DGLLVQTRDGDLYA  375 (377)
T ss_pred             cCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCccccCCEEEC-CEEEEEeCCceEEE
Confidence            2122  4568888999999999999999999888765543322222223 35778888888765

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.38  E-value=0.028  Score=40.81  Aligned_cols=101  Identities=15%  Similarity=0.314  Sum_probs=68.4

Q ss_pred             EEEEEeee---CCCccEEEEEcCCCeEEEEECCCCeEEEEeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeee
Q psy4650          81 VNCVDYYH---GGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLE  157 (381)
Q Consensus        81 v~~~~~~~---~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~  157 (381)
                      |+++++..   +|. +.|+.|+.|..||+|+-.  ..+..+..+ +.|.++.-... ..++.+..+|+|-+|+-.  ..+
T Consensus         2 V~al~~~d~d~dg~-~eLlvGs~D~~IRvf~~~--e~~~Ei~e~-~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~--~Rl   74 (111)
T PF14783_consen    2 VTALCLFDFDGDGE-NELLVGSDDFEIRVFKGD--EIVAEITET-DKVTSLCSLGG-GRFAYALANGTVGVYDRS--QRL   74 (111)
T ss_pred             eeEEEEEecCCCCc-ceEEEecCCcEEEEEeCC--cEEEEEecc-cceEEEEEcCC-CEEEEEecCCEEEEEeCc--cee
Confidence            55666554   333 479999999999999864  566777754 46677766555 678999999999999863  334


Q ss_pred             EEEecCCcceEEEEEcC-CC---CEEEEEeCCCeEE
Q psy4650         158 ISLTYGLERVWTISSLK-GS---NNVAIGYDEGSVL  189 (381)
Q Consensus       158 ~~~~~~~~~v~~v~~~~-~~---~~l~~~~~dg~v~  189 (381)
                      +..+.. ..+.++.+.. ++   .-|++|..+|.+-
T Consensus        75 WRiKSK-~~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   75 WRIKSK-NQVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             eeeccC-CCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence            444433 3355555443 32   3688888888764

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=97.36  E-value=0.072  Score=45.19  Aligned_cols=197  Identities=6%  Similarity=-0.007  Sum_probs=106.9

Q ss_pred             ecCCeEEEecCCCccceeeEeec---cccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEEEecc-------CC
Q psy4650          53 QESSRVKAFNPIQVATLILKTLY---GHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEG-------HG  122 (381)
Q Consensus        53 ~~d~~v~i~~~~~~~~~~~~~l~---~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~-------~~  122 (381)
                      -.|..|.|-...+.=..++.+.+   .-...-.-++||||+.  +||.+...|+|+++|+.... +..+..       -.
T Consensus        15 ~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~t--lLa~a~S~G~i~vfdl~g~~-lf~I~p~~~~~~d~~   91 (282)
T PF15492_consen   15 LQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCT--LLAYAESTGTIRVFDLMGSE-LFVIPPAMSFPGDLS   91 (282)
T ss_pred             EeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCc--EEEEEcCCCeEEEEecccce-eEEcCcccccCCccc
Confidence            34456666554332222222222   2223456789999887  89999999999999997533 334332       12


Q ss_pred             CCEEEEEEecCC------CEEEEEeCCCCEEEEeCCC-----CeeeEEEec---CCcceEEEEEcCCCCEEEEEeC-CCe
Q psy4650         123 QNISAVCFHPEL------PIVITGSEDGSVRVWHSGT-----HRLEISLTY---GLERVWTISSLKGSNNVAIGYD-EGS  187 (381)
Q Consensus       123 ~~v~~~~~~p~~------~~l~s~~~d~~i~vwd~~~-----~~~~~~~~~---~~~~v~~v~~~~~~~~l~~~~~-dg~  187 (381)
                      ..|..+.|-+..      ..|+.-...|.++=|-+..     .+...++..   +...|.++.|+|..++|.+|+. ...
T Consensus        92 ~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~  171 (282)
T PF15492_consen   92 DAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQ  171 (282)
T ss_pred             cceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCC
Confidence            345556665432      1344445566666555432     223333322   4568999999999888777654 222


Q ss_pred             EEEEecCCCceEEEecCCCEEEEEecCce--ee------------c----------ccccCCccccccCCceEEeeehHH
Q psy4650         188 VLLKVGREEPAVSMDVNGCKIIWARHSEV--QQ------------A----------NLKTMPEVFENITAGVVLTLSVHV  243 (381)
Q Consensus       188 v~i~~~~~~~~~~~d~~~~~~~~~~~~~~--~~------------~----------~~~~~~~~~~~~~dg~~l~~~~~d  243 (381)
                      -..+....--+..|-.-++.+.+......  ..            .          ...++- .+..+|||..|++..-.
T Consensus       172 ~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~-kmSlSPdg~~La~ih~s  250 (282)
T PF15492_consen  172 DGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIF-KMSLSPDGSLLACIHFS  250 (282)
T ss_pred             CccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceE-EEEECCCCCEEEEEEcC
Confidence            11111112222333333333332211000  00            0          001111 15778999999999999


Q ss_pred             HHHhccCCCc
Q psy4650         244 TIKYRLDISD  253 (381)
Q Consensus       244 ~~~~~~d~~~  253 (381)
                      +....|++..
T Consensus       251 G~lsLW~iPs  260 (282)
T PF15492_consen  251 GSLSLWEIPS  260 (282)
T ss_pred             CeEEEEecCc
Confidence            9999998864

>KOG0882|consensus

Probab=97.32  E-value=0.0043  Score=55.48  Aligned_cols=112  Identities=16%  Similarity=0.094  Sum_probs=87.7

Q ss_pred             eEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCC------CeEEEE---
Q psy4650          47 EYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQN------KTCVQT---  117 (381)
Q Consensus        47 ~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~------~~~~~~---  117 (381)
                      .+-++...++.+.++|...........-+-|..+|.++.+.+.++  .++|....|-|..|....      .+....   
T Consensus       113 ~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~D--s~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~  190 (558)
T KOG0882|consen  113 LIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGD--SAVSIDISGMVEYWSAEGPFQFPRTNLNFELKH  190 (558)
T ss_pred             eEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeecccc--ceeeccccceeEeecCCCcccCccccccccccc
Confidence            455667778999999997666666667777999999999999887  588888899999998873      111111   


Q ss_pred             ------eccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEE
Q psy4650         118 ------LEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISL  160 (381)
Q Consensus       118 ------~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~  160 (381)
                            +.-......++.|+|++..+.+-+.|..|+++++.+|+.++.+
T Consensus       191 eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqei  239 (558)
T KOG0882|consen  191 ETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEI  239 (558)
T ss_pred             cchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhh
Confidence                  2223445689999999999999999999999999999876654

>PRK01433 hscA chaperone protein HscA; Provisional

Probab=97.28  E-value=0.00043  Score=66.95  Aligned_cols=57  Identities=16%  Similarity=0.204  Sum_probs=48.5

Q ss_pred             hhhhHhhhccccceeeEeeccccCcceEEeecHHHHHHHHHHHHHHhHHHHHHHHHhCCCCcccccccc
Q psy4650         312 VQPCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIGGLLTSFVQPIEDVLSRSNITHDQINKFT  380 (381)
Q Consensus       312 ~~~~~~~Ls~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~v~  380 (381)
                      ++.+|+.|+.......          ....++|.+||++++++|.+++.+++++|++|+  +.+||+|+
T Consensus       257 ~ekaK~~LS~~~~~~~----------~~~~itr~efe~l~~~l~~~~~~~i~~~L~~a~--~~~Id~Vi  313 (595)
T PRK01433        257 AKKAKETLTYKDSFNN----------DNISINKQTLEQLILPLVERTINIAQECLEQAG--NPNIDGVI  313 (595)
T ss_pred             HHHHHHhcCCCccccc----------ceEEEcHHHHHHHHHHHHHHHHHHHHHHHhhcC--cccCcEEE
Confidence            7788999987543211          267999999999999999999999999999999  78999986

>KOG1832|consensus

Probab=97.28  E-value=0.00024  Score=68.34  Aligned_cols=114  Identities=14%  Similarity=0.215  Sum_probs=82.9

Q ss_pred             eEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEEEeccCCCCEEEEEEecCCCEEEEE-eCCC-CEEE
Q psy4650          71 LKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPIVITG-SEDG-SVRV  148 (381)
Q Consensus        71 ~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~-~~d~-~i~v  148 (381)
                      .+++..|+...+|++|+-+.+  .|+.|+..|.|+++++.+|.......+|..+|+.+.=+.+|..+++. ++.. ...+
T Consensus      1094 w~~frd~~~~fTc~afs~~~~--hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaL 1171 (1516)
T KOG1832|consen 1094 WRSFRDETALFTCIAFSGGTN--HLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSAL 1171 (1516)
T ss_pred             chhhhccccceeeEEeecCCc--eEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHH
Confidence            456678899999999987544  89999999999999999999999999999999999888899855544 3333 5779


Q ss_pred             EeCCC-CeeeEEEecCCcceEEEEEcCCCCEEEEEeCCCeEEE
Q psy4650         149 WHSGT-HRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLL  190 (381)
Q Consensus       149 wd~~~-~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i  190 (381)
                      |++.. +....++..    -.++.|+.....-+.|+......+
T Consensus      1172 W~~~s~~~~~Hsf~e----d~~vkFsn~~q~r~~gt~~d~a~~ 1210 (1516)
T KOG1832|consen 1172 WDASSTGGPRHSFDE----DKAVKFSNSLQFRALGTEADDALL 1210 (1516)
T ss_pred             hccccccCccccccc----cceeehhhhHHHHHhcccccceEE
Confidence            99863 444554442    235666655444444444444444

>KOG2114|consensus

Probab=97.27  E-value=0.053  Score=52.70  Aligned_cols=144  Identities=10%  Similarity=0.059  Sum_probs=92.9

Q ss_pred             CCceEEEEEecCCe-----EEEecCCCc---c-ceee--Eeeccc-----cccEEEEEeeeCCCccEEEEEcCCCeEEEE
Q psy4650          44 DMIEYKISYQESSR-----VKAFNPIQV---A-TLIL--KTLYGH-----EKGVNCVDYYHGGDKPYLISGADDRLVKIW  107 (381)
Q Consensus        44 ~~~~~~~s~~~d~~-----v~i~~~~~~---~-~~~~--~~l~~h-----~~~v~~~~~~~~~~~~~l~s~~~d~~v~vw  107 (381)
                      +..++|++.+.|+.     +++|+++..   . +.++  +.+.+|     ..++.+++.+.+-  ..+|.|-.+|.|..+
T Consensus        75 ~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l--~~Iv~Gf~nG~V~~~  152 (933)
T KOG2114|consen   75 NKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDL--KTIVCGFTNGLVICY  152 (933)
T ss_pred             cCceEEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccc--cEEEEEecCcEEEEE
Confidence            34567877776654     899999653   1 3344  223332     3467888888763  379999999999987


Q ss_pred             ECCC----CeEEEEeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCee-eEEEecCCcceEEEEEcCCCCEEEEE
Q psy4650         108 DYQN----KTCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRL-EISLTYGLERVWTISSLKGSNNVAIG  182 (381)
Q Consensus       108 d~~~----~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~-~~~~~~~~~~v~~v~~~~~~~~l~~~  182 (381)
                      .-.-    +....-...-..+|+.+++..++..+.-......|.+|.+.+..+ ...+..+...+.|..+++....++++
T Consensus       153 ~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca  232 (933)
T KOG2114|consen  153 KGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICA  232 (933)
T ss_pred             cCcchhccccceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEe
Confidence            4321    111111222357899999998888633333456799999885442 44467777888999998876656665


Q ss_pred             eCCCeEEE
Q psy4650         183 YDEGSVLL  190 (381)
Q Consensus       183 ~~dg~v~i  190 (381)
                      +.. .+.+
T Consensus       233 ~~e-~l~f  239 (933)
T KOG2114|consen  233 GSE-FLYF  239 (933)
T ss_pred             cCc-eEEE
Confidence            543 4444

>KOG4640|consensus

Probab=97.24  E-value=0.0016  Score=60.50  Aligned_cols=69  Identities=17%  Similarity=0.320  Sum_probs=61.5

Q ss_pred             CCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEecCCcceE-EEEEcCCCCEEEEEeCCCeEEEEe
Q psy4650         123 QNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVW-TISSLKGSNNVAIGYDEGSVLLKV  192 (381)
Q Consensus       123 ~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~-~v~~~~~~~~l~~~~~dg~v~i~~  192 (381)
                      ..+..+.|+|.-..+|.+..+|.+.+..+. .+.+++++.+...++ +++|.|+|+.+|.|-.||++++-+
T Consensus        21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~D   90 (665)
T KOG4640|consen   21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHD   90 (665)
T ss_pred             cceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEE
Confidence            457889999999999999999999999988 777888886767776 999999999999999999999954

>KOG3621|consensus

Probab=97.15  E-value=0.0018  Score=60.96  Aligned_cols=115  Identities=12%  Similarity=0.067  Sum_probs=82.8

Q ss_pred             ceeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeE-
Q psy4650          36 KVDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTC-  114 (381)
Q Consensus        36 ~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~-  114 (381)
                      ..++++..-..+|++-|+.-|.+++|+-... .+...+-.+-.+.+..+..+++..  ++|.|+..|.|.++.+..+.+ 
T Consensus        35 ~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~-~~~~~~~~~~~~~~~~~~vs~~e~--lvAagt~~g~V~v~ql~~~~p~  111 (726)
T KOG3621|consen   35 RVKLTCVDATEEYLAMGSSAGSVYLYNRHTG-EMRKLKNEGATGITCVRSVSSVEY--LVAAGTASGRVSVFQLNKELPR  111 (726)
T ss_pred             eEEEEEeecCCceEEEecccceEEEEecCch-hhhcccccCccceEEEEEecchhH--hhhhhcCCceEEeehhhccCCC
Confidence            3455666666889999999999999997532 222223334445556666776554  788888999999998765422 


Q ss_pred             --EEE--e-ccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCC
Q psy4650         115 --VQT--L-EGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGT  153 (381)
Q Consensus       115 --~~~--~-~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~  153 (381)
                        ...  . +.|...|+|++|++++..+.+|...|.|..-.+.+
T Consensus       112 ~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen  112 DLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             cceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence              111  1 23678899999999999999999999998887765

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=97.11  E-value=0.066  Score=54.80  Aligned_cols=71  Identities=10%  Similarity=0.187  Sum_probs=53.1

Q ss_pred             ccccEEEEEeeeCCCccEEEEEcCCCeEEEE----ECCCCeEEEEeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEe
Q psy4650          77 HEKGVNCVDYYHGGDKPYLISGADDRLVKIW----DYQNKTCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWH  150 (381)
Q Consensus        77 h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vw----d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd  150 (381)
                      ..+.|.++.+.++.+  .++.+..+|.|.+.    +..+.. +.....-..+|.+++|+||+..++....++++.+-.
T Consensus        74 ~~~~ivs~~yl~d~~--~l~~~~~~Gdi~~~~~~~~~~~~~-~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt  148 (928)
T PF04762_consen   74 PNDKIVSFQYLADSE--SLCIALASGDIILVREDPDPDEDE-IEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMT  148 (928)
T ss_pred             CCCcEEEEEeccCCC--cEEEEECCceEEEEEccCCCCCce-eEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEe
Confidence            346899999998776  68888889999988    444332 222223456899999999999998888888887763

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=97.11  E-value=0.029  Score=50.34  Aligned_cols=114  Identities=14%  Similarity=0.205  Sum_probs=77.3

Q ss_pred             CCceEEEEEecCCeEEEecCCCcccee---eEeecc-------ccccEEEEEeeeCCCccEEEEEcC--------CCeEE
Q psy4650          44 DMIEYKISYQESSRVKAFNPIQVATLI---LKTLYG-------HEKGVNCVDYYHGGDKPYLISGAD--------DRLVK  105 (381)
Q Consensus        44 ~~~~~~~s~~~d~~v~i~~~~~~~~~~---~~~l~~-------h~~~v~~~~~~~~~~~~~l~s~~~--------d~~v~  105 (381)
                      ++..+.++..  |+|.+.|+.......   ...+..       ..+.+.-++++|++..-+++.-+.        .+.|.
T Consensus       205 dg~~~~vs~e--G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~  282 (352)
T TIGR02658       205 SGRLVWPTYT--GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLF  282 (352)
T ss_pred             CCcEEEEecC--CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEE
Confidence            4444445544  899999964322221   111111       233455699999888533323222        25899


Q ss_pred             EEECCCCeEEEEeccCCCCEEEEEEecCCC-EEEEEe-CCCCEEEEeCCCCeeeEEE
Q psy4650         106 IWDYQNKTCVQTLEGHGQNISAVCFHPELP-IVITGS-EDGSVRVWHSGTHRLEISL  160 (381)
Q Consensus       106 vwd~~~~~~~~~~~~~~~~v~~~~~~p~~~-~l~s~~-~d~~i~vwd~~~~~~~~~~  160 (381)
                      ++|..+++.+..+.. ...+..++++|+++ .|.... .++.|.++|..+++.+.++
T Consensus       283 ViD~~t~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i  338 (352)
T TIGR02658       283 VVDAKTGKRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV  338 (352)
T ss_pred             EEECCCCeEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence            999999998888863 34789999999999 777665 5788999999999988877

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG2114|consensus

Probab=97.04  E-value=0.05  Score=52.91  Aligned_cols=137  Identities=16%  Similarity=0.260  Sum_probs=89.9

Q ss_pred             eeeecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCC-----eEEEEECCCC
Q psy4650          38 DITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDR-----LVKIWDYQNK  112 (381)
Q Consensus        38 ~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~-----~v~vwd~~~~  112 (381)
                      ++.+-..++..++-|+.+|.|.+++-.   -..++.++.+...+...-|.-++. .+|++-+.|+     .+++|++...
T Consensus        27 ~isc~~s~~~~vvigt~~G~V~~Ln~s---~~~~~~fqa~~~siv~~L~~~~~~-~~L~sv~Ed~~~np~llkiw~lek~  102 (933)
T KOG2114|consen   27 AISCCSSSTGSVVIGTADGRVVILNSS---FQLIRGFQAYEQSIVQFLYILNKQ-NFLFSVGEDEQGNPVLLKIWDLEKV  102 (933)
T ss_pred             ceeEEcCCCceEEEeeccccEEEeccc---ceeeehheecchhhhhHhhcccCc-eEEEEEeecCCCCceEEEEeccccc
Confidence            555555556788899999999999852   344477777777733333443333 3788777665     4899998642


Q ss_pred             ------eEE---EEe--cc--CCCCEEEEEEecCCCEEEEEeCCCCEEEEeCC----CCeeeEEEecCCcceEEEEEcCC
Q psy4650         113 ------TCV---QTL--EG--HGQNISAVCFHPELPIVITGSEDGSVRVWHSG----THRLEISLTYGLERVWTISSLKG  175 (381)
Q Consensus       113 ------~~~---~~~--~~--~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~----~~~~~~~~~~~~~~v~~v~~~~~  175 (381)
                            .++   +.+  +.  ...++.+++.+.+-..++.|-.+|.|.++.-+    .|....-.....++|+.+.+..+
T Consensus       103 ~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d  182 (933)
T KOG2114|consen  103 DKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSD  182 (933)
T ss_pred             CCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecC
Confidence                  223   111  22  24578999999998899999999999988532    12211112234578888888877


Q ss_pred             CCE
Q psy4650         176 SNN  178 (381)
Q Consensus       176 ~~~  178 (381)
                      +..
T Consensus       183 ~~s  185 (933)
T KOG2114|consen  183 GKS  185 (933)
T ss_pred             Cce
Confidence            765

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=97.02  E-value=0.2  Score=43.70  Aligned_cols=204  Identities=11%  Similarity=0.070  Sum_probs=116.2

Q ss_pred             eeeecCCCceEEEEEecCC-eEEEecCCCccce------eeEeeccccccEEEEEeeeCCCccEEEEE-----cCCCeEE
Q psy4650          38 DITTNKDMIEYKISYQESS-RVKAFNPIQVATL------ILKTLYGHEKGVNCVDYYHGGDKPYLISG-----ADDRLVK  105 (381)
Q Consensus        38 ~i~~~~~~~~~~~s~~~d~-~v~i~~~~~~~~~------~~~~l~~h~~~v~~~~~~~~~~~~~l~s~-----~~d~~v~  105 (381)
                      .+...+.....++-+-.-| ...+||+......      .-+.+.||      -.||++|.  +|.+.     ...|.|-
T Consensus         9 ~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGH------g~fs~dG~--~LytTEnd~~~g~G~Ig   80 (305)
T PF07433_consen    9 GVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGH------GVFSPDGR--LLYTTENDYETGRGVIG   80 (305)
T ss_pred             ceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecC------EEEcCCCC--EEEEeccccCCCcEEEE
Confidence            3444454455555555544 3446666432111      11334455      46889887  56554     4468899


Q ss_pred             EEECC-CCeEEEEeccCCCCEEEEEEecCCCEEEEEe------------------CCCCEEEEeCCCCeeeEE--E--ec
Q psy4650         106 IWDYQ-NKTCVQTLEGHGQNISAVCFHPELPIVITGS------------------EDGSVRVWHSGTHRLEIS--L--TY  162 (381)
Q Consensus       106 vwd~~-~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~------------------~d~~i~vwd~~~~~~~~~--~--~~  162 (381)
                      |||.. +...+.++..|.-.-+.+.+.|+|+.|+.+.                  .+..+...|..+|+.+..  +  ..
T Consensus        81 Vyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~  160 (305)
T PF07433_consen   81 VYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDL  160 (305)
T ss_pred             EEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccc
Confidence            99998 5577888888876678899999997666541                  123455567778887665  4  33


Q ss_pred             CCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCce-EEEecCCCEEEEEecCceeecccccCCccccccCCceEEeeeh
Q psy4650         163 GLERVWTISSLKGSNNVAIGYDEGSVLLKVGREEPA-VSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSV  241 (381)
Q Consensus       163 ~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~~~~~~~-~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~  241 (381)
                      |...+..+++.++|..+...-..|.-.    ...++ ..++.... +..-...+.....+.++...++++++|..+++.+
T Consensus       161 ~~lSiRHLa~~~~G~V~~a~Q~qg~~~----~~~PLva~~~~g~~-~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~ts  235 (305)
T PF07433_consen  161 HQLSIRHLAVDGDGTVAFAMQYQGDPG----DAPPLVALHRRGGA-LRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTS  235 (305)
T ss_pred             cccceeeEEecCCCcEEEEEecCCCCC----ccCCeEEEEcCCCc-ceeccCChHHHHhhCCceEEEEEeCCCCEEEEEC
Confidence            677899999999987666554433211    01111 12222221 1111111112234444444467788887665444


Q ss_pred             -HHHHHhccCCCcC
Q psy4650         242 -HVTIKYRLDISDS  254 (381)
Q Consensus       242 -~d~~~~~~d~~~~  254 (381)
                       .-+....||....
T Consensus       236 PrGg~~~~~d~~tg  249 (305)
T PF07433_consen  236 PRGGRVAVWDAATG  249 (305)
T ss_pred             CCCCEEEEEECCCC
Confidence             4445666766543

>KOG4649|consensus

Probab=97.00  E-value=0.086  Score=44.19  Aligned_cols=110  Identities=12%  Similarity=0.068  Sum_probs=81.2

Q ss_pred             cEEEEEcCCCeEEEEECCCCeEEEEeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEecCCcceEEEEE
Q psy4650          93 PYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISS  172 (381)
Q Consensus        93 ~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~  172 (381)
                      .+++.||-.+.+..-|..+|+....-- -...+.+-+.- -|.+++.|+..|.+.+.++.+|...+.+..-..--.....
T Consensus        24 T~v~igSHs~~~~avd~~sG~~~We~i-lg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~  101 (354)
T KOG4649|consen   24 TLVVIGSHSGIVIAVDPQSGNLIWEAI-LGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQC  101 (354)
T ss_pred             eEEEEecCCceEEEecCCCCcEEeehh-hCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEE
Confidence            478888888888888999988765432 12233333322 4677899999999999999999888777643332234456


Q ss_pred             cCCCCEEEEEeCCCeEEEEecCCCceEEEecCCCEEEEEecC
Q psy4650         173 LKGSNNVAIGYDEGSVLLKVGREEPAVSMDVNGCKIIWARHS  214 (381)
Q Consensus       173 ~~~~~~l~~~~~dg~v~i~~~~~~~~~~~d~~~~~~~~~~~~  214 (381)
                      .+++..+.+|+.|+....          .|..+...+|...-
T Consensus       102 d~~~glIycgshd~~~ya----------lD~~~~~cVykskc  133 (354)
T KOG4649|consen  102 DFDGGLIYCGSHDGNFYA----------LDPKTYGCVYKSKC  133 (354)
T ss_pred             cCCCceEEEecCCCcEEE----------ecccccceEEeccc
Confidence            788899999999999988          88888888887543

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=96.99  E-value=0.0049  Score=52.49  Aligned_cols=148  Identities=14%  Similarity=0.154  Sum_probs=96.4

Q ss_pred             eeecCCCceEEEEEecCCeEEEecCCCccce-eeEeeccc-----cccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCC
Q psy4650          39 ITTNKDMIEYKISYQESSRVKAFNPIQVATL-ILKTLYGH-----EKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNK  112 (381)
Q Consensus        39 i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~-~~~~l~~h-----~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~  112 (381)
                      +..+.+ .+.+++ ++|-.|.+|+++..... -+..++.|     +..|++..|+|... +.+.-.+..|.|++-|++..
T Consensus       178 iS~NsD-~et~lS-aDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~c-n~fmYSsSkG~Ikl~DlRq~  254 (460)
T COG5170         178 ISFNSD-KETLLS-ADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMC-NVFMYSSSKGEIKLNDLRQS  254 (460)
T ss_pred             eeecCc-hheeee-ccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHc-ceEEEecCCCcEEehhhhhh
Confidence            334444 344554 45668999998643222 23334444     35689999999665 36666778999999998743


Q ss_pred             eE------E----------EEeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCC-eeeEEEecCC-----------
Q psy4650         113 TC------V----------QTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTH-RLEISLTYGL-----------  164 (381)
Q Consensus       113 ~~------~----------~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~-~~~~~~~~~~-----------  164 (381)
                      ..      +          .-+.+-...|..+.|++.|+++++-.. -++++||++.. .++.+++.|.           
T Consensus       255 alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YE  333 (460)
T COG5170         255 ALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYE  333 (460)
T ss_pred             hhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHHHHHhhhh
Confidence            10      0          012233456788999999999987654 48999999854 4566664332           


Q ss_pred             -cc---eEEEEEcCCCCEEEEEeCCCeEEE
Q psy4650         165 -ER---VWTISSLKGSNNVAIGYDEGSVLL  190 (381)
Q Consensus       165 -~~---v~~v~~~~~~~~l~~~~~dg~v~i  190 (381)
                       +.   -..+.|+.+.+.+.+|+..+..-+
T Consensus       334 nDaifdkFeisfSgd~~~v~sgsy~NNfgi  363 (460)
T COG5170         334 NDAIFDKFEISFSGDDKHVLSGSYSNNFGI  363 (460)
T ss_pred             ccceeeeEEEEecCCcccccccccccceee
Confidence             22   245778888888888887666655

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=96.98  E-value=0.067  Score=38.84  Aligned_cols=94  Identities=14%  Similarity=0.188  Sum_probs=62.6

Q ss_pred             cCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEEEeccC
Q psy4650          42 NKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGH  121 (381)
Q Consensus        42 ~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~  121 (381)
                      ..++..-|+.|+.|..|++|+-.    .++..+.. ++.|+++.-...+   .++.+..+|+|-+|+-.  ..+..++.-
T Consensus        11 d~dg~~eLlvGs~D~~IRvf~~~----e~~~Ei~e-~~~v~~L~~~~~~---~F~Y~l~NGTVGvY~~~--~RlWRiKSK   80 (111)
T PF14783_consen   11 DGDGENELLVGSDDFEIRVFKGD----EIVAEITE-TDKVTSLCSLGGG---RFAYALANGTVGVYDRS--QRLWRIKSK   80 (111)
T ss_pred             CCCCcceEEEecCCcEEEEEeCC----cEEEEEec-ccceEEEEEcCCC---EEEEEecCCEEEEEeCc--ceeeeeccC
Confidence            45566789999999999999853    44555543 5677777766542   69999999999999863  334555533


Q ss_pred             CCCEEEEEEe-cCC--C-EEEEEeCCCCE
Q psy4650         122 GQNISAVCFH-PEL--P-IVITGSEDGSV  146 (381)
Q Consensus       122 ~~~v~~~~~~-p~~--~-~l~s~~~d~~i  146 (381)
                      . .+.++.+. .++  . .|++|-.+|.|
T Consensus        81 ~-~~~~~~~~D~~gdG~~eLI~GwsnGkv  108 (111)
T PF14783_consen   81 N-QVTSMAFYDINGDGVPELIVGWSNGKV  108 (111)
T ss_pred             C-CeEEEEEEcCCCCCceEEEEEecCCeE
Confidence            3 35555543 332  2 56666666655

>KOG2314|consensus

Probab=96.93  E-value=0.021  Score=52.65  Aligned_cols=150  Identities=11%  Similarity=0.142  Sum_probs=94.5

Q ss_pred             CChhhHHHHhhhccee-eeecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcC-
Q psy4650          23 LTETDIETIVRETKVD-ITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGAD-  100 (381)
Q Consensus        23 ~~~~~~~~~~~~~~~~-i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~-  100 (381)
                      ++.|..-....+..-. +..+|. +.||++--.- .|.+|--..  -..++.+ .| ..|.-+.|||...  ||+|-|. 
T Consensus       199 ~n~p~~ie~RenWTetyv~wSP~-GTYL~t~Hk~-GI~lWGG~~--f~r~~RF-~H-p~Vq~idfSP~Ek--YLVT~s~~  270 (698)
T KOG2314|consen  199 FNEPSLIEERENWTETYVRWSPK-GTYLVTFHKQ-GIALWGGES--FDRIQRF-YH-PGVQFIDFSPNEK--YLVTYSPE  270 (698)
T ss_pred             CCchhhhhhhhcceeeeEEecCC-ceEEEEEecc-ceeeecCcc--HHHHHhc-cC-CCceeeecCCccc--eEEEecCC
Confidence            3344444444444443 444554 6799887665 467886532  1112222 23 4578889999655  8988654 


Q ss_pred             ----------CCeEEEEECCCCeEEEEeccCCC--CE-EEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEecCCcce
Q psy4650         101 ----------DRLVKIWDYQNKTCVQTLEGHGQ--NI-SAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERV  167 (381)
Q Consensus       101 ----------d~~v~vwd~~~~~~~~~~~~~~~--~v-~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v  167 (381)
                                -..++|||+.+|...+.|....+  .+ .-..||.++.++|.-..+ .|.|++..+-.++-.-.-.-..|
T Consensus       271 p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~-sisIyEtpsf~lld~Kslki~gI  349 (698)
T KOG2314|consen  271 PIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGN-SISIYETPSFMLLDKKSLKISGI  349 (698)
T ss_pred             ccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEeccc-eEEEEecCceeeecccccCCccc
Confidence                      25789999999988887765322  22 346899999999876654 68899876643332222234566


Q ss_pred             EEEEEcCCCCEEEE
Q psy4650         168 WTISSLKGSNNVAI  181 (381)
Q Consensus       168 ~~v~~~~~~~~l~~  181 (381)
                      ....|+|.+++||.
T Consensus       350 r~FswsP~~~llAY  363 (698)
T KOG2314|consen  350 RDFSWSPTSNLLAY  363 (698)
T ss_pred             cCcccCCCcceEEE
Confidence            77778888777654

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=96.91  E-value=0.035  Score=50.63  Aligned_cols=131  Identities=10%  Similarity=0.024  Sum_probs=88.4

Q ss_pred             CeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEEEeccCCCCEEEEEEecCCC
Q psy4650          56 SRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELP  135 (381)
Q Consensus        56 ~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~p~~~  135 (381)
                      .++.++++.+...   ....+-.++|...+|.|.+.+-.+++|-.+.++.++|++.. .+..+.  .+.=..+.|+|.++
T Consensus       255 snLyl~~~~e~~i---~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~P--e~~rNT~~fsp~~r  328 (561)
T COG5354         255 SNLYLLRITERSI---PVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYFP--EQKRNTIFFSPHER  328 (561)
T ss_pred             ceEEEEeeccccc---ceeccccccceeeeecccCCceeEEecccccceeecccccc-eEEecC--CcccccccccCccc
Confidence            3566676653222   22225578999999999888645566678999999999865 333333  34447788999999


Q ss_pred             EEEEEeC---CCCEEEEeCCCCeeeE-EEecCCcceEEEEEcCCCCEEEEEeC------CCeEEEEecC
Q psy4650         136 IVITGSE---DGSVRVWHSGTHRLEI-SLTYGLERVWTISSLKGSNNVAIGYD------EGSVLLKVGR  194 (381)
Q Consensus       136 ~l~s~~~---d~~i~vwd~~~~~~~~-~~~~~~~~v~~v~~~~~~~~l~~~~~------dg~v~i~~~~  194 (381)
                      +++.++-   .|.+-+||..+.-.+. .+.+.  ..+-+.|+|++.++.+...      |..+.+|.-.
T Consensus       329 ~il~agF~nl~gni~i~~~~~rf~~~~~~~~~--n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~  395 (561)
T COG5354         329 YILFAGFDNLQGNIEIFDPAGRFKVAGAFNGL--NTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVY  395 (561)
T ss_pred             EEEEecCCccccceEEeccCCceEEEEEeecC--CceEeeccCCceEEEecCCCcccccCcceEEEEec
Confidence            8877655   4689999987655444 44433  2344679999998877653      5566665533

>PRK02888 nitrous-oxide reductase; Validated

Probab=96.89  E-value=0.086  Score=50.41  Aligned_cols=90  Identities=10%  Similarity=-0.062  Sum_probs=59.8

Q ss_pred             CCeEEEEECCC-----CeEEEEeccCCCCEEEEEEecCCCEEEEEe-CCCCEEEEeCCCCee------------eEEEec
Q psy4650         101 DRLVKIWDYQN-----KTCVQTLEGHGQNISAVCFHPELPIVITGS-EDGSVRVWHSGTHRL------------EISLTY  162 (381)
Q Consensus       101 d~~v~vwd~~~-----~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~-~d~~i~vwd~~~~~~------------~~~~~~  162 (381)
                      ++.|.+.|..+     ...+..+... ...+.+.++|||++++.++ .+.++.|.|+.+.+.            .....-
T Consensus       295 gn~V~VID~~t~~~~~~~v~~yIPVG-KsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev  373 (635)
T PRK02888        295 GSKVPVVDGRKAANAGSALTRYVPVP-KNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL  373 (635)
T ss_pred             CCEEEEEECCccccCCcceEEEEECC-CCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeecc
Confidence            35678888877     3445555433 3458899999999776554 499999999987542            222222


Q ss_pred             CCcceEEEEEcCCCCEEEEEeCCCeEEEEe
Q psy4650         163 GLERVWTISSLKGSNNVAIGYDEGSVLLKV  192 (381)
Q Consensus       163 ~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~  192 (381)
                       .......+|.++|....+-.-|..+..|+
T Consensus       374 -GlGPLHTaFDg~G~aytslf~dsqv~kwn  402 (635)
T PRK02888        374 -GLGPLHTAFDGRGNAYTTLFLDSQIVKWN  402 (635)
T ss_pred             -CCCcceEEECCCCCEEEeEeecceeEEEe
Confidence             23345678888887777766677776644

>KOG3621|consensus

Probab=96.86  E-value=0.0074  Score=57.03  Aligned_cols=98  Identities=18%  Similarity=0.194  Sum_probs=74.7

Q ss_pred             cEEEEEcCCCeEEEEECCCCeEEE-EeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCee---eEEE---ecCCc
Q psy4650          93 PYLISGADDRLVKIWDYQNKTCVQ-TLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRL---EISL---TYGLE  165 (381)
Q Consensus        93 ~~l~s~~~d~~v~vwd~~~~~~~~-~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~---~~~~---~~~~~  165 (381)
                      .+++.|+.-|.+.+++-..+..+. ...+..+.+.....+++..++|.|+..|.|.++-+..+.+   ++.-   ..|..
T Consensus        46 ~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~  125 (726)
T KOG3621|consen   46 EYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHKC  125 (726)
T ss_pred             ceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeeccccccCCc
Confidence            389999999999999976665322 2223445566677888888999999999999998765332   2211   12678


Q ss_pred             ceEEEEEcCCCCEEEEEeCCCeEEE
Q psy4650         166 RVWTISSLKGSNNVAIGYDEGSVLL  190 (381)
Q Consensus       166 ~v~~v~~~~~~~~l~~~~~dg~v~i  190 (381)
                      .|++++|++++..+.+|...|.|.+
T Consensus       126 rVTal~Ws~~~~k~ysGD~~Gkv~~  150 (726)
T KOG3621|consen  126 RVTALEWSKNGMKLYSGDSQGKVVL  150 (726)
T ss_pred             eEEEEEecccccEEeecCCCceEEE
Confidence            8999999999999999999999877

>PRK13928 rod shape-determining protein Mbl; Provisional

Probab=96.85  E-value=0.0024  Score=57.57  Aligned_cols=104  Identities=14%  Similarity=0.111  Sum_probs=74.1

Q ss_pred             HHHhhhhhhcccc----ceeeEEEe--cccCCcccccccChHHHHHHHHHHhhhhhhhhHhhhccccceeeEeeccc-cC
Q psy4650         263 AAAETCMHVLSTL----QSSNVFVE--SLYDGLDFHHNVSRARFESLIGGLLTSFVQPCMHVLSTLQSSNVFVESLY-DG  335 (381)
Q Consensus       263 ~~~e~ak~~lS~~----~~~~i~~~--~l~~g~~~~~~itr~~fe~l~~~l~~~~~~~~~~~Ls~~~~~~~~~~~~~-~~  335 (381)
                      ..+|+.|+.++..    ....+.+.  .+..|......++|++|++++.+++.++.+.++++|.... ..+..+.+. +.
T Consensus       201 ~~ae~lK~~~~~~~~~~~~~~~~v~g~~~~~~~~~~~~i~~~~~~eii~~~~~~i~~~i~~~l~~~~-~~~~~~~i~~~I  279 (336)
T PRK13928        201 RTAEEIKIKIGTAFPGAREEEMEIRGRDLVTGLPKTITVTSEEIREALKEPVSAIVQAVKSVLERTP-PELSADIIDRGI  279 (336)
T ss_pred             HHHHHHHHHhcccccccCCcEEEEecccccCCCceEEEECHHHHHHHHHHHHHHHHHHHHHHHHhCC-ccccHhhcCCCE
Confidence            3577788777543    12233332  2345666778999999999999999999999999998753 223334455 46


Q ss_pred             cceEEeecHHHHHHHHHHHHHH----hHHHHHHHHH
Q psy4650         336 LDFHHNVSRARFESLIGGLLTS----FVQPIEDVLS  367 (381)
Q Consensus       336 ~~~~~~~~~~~~e~~~~~~~~~----~~~~~~~~l~  367 (381)
                      ++.||+.++|.+.+++++.|+.    ..+|.+.+..
T Consensus       280 vL~GG~s~ipgi~e~l~~~~~~~v~~~~~P~~ava~  315 (336)
T PRK13928        280 IMTGGGALLHGLDKLLAEETKVPVYIAEDPISCVAL  315 (336)
T ss_pred             EEECcccchhhHHHHHHHHHCCCceecCCHHHHHHH
Confidence            7889999999999999999973    2245544443

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=96.81  E-value=0.13  Score=44.80  Aligned_cols=155  Identities=12%  Similarity=0.108  Sum_probs=100.3

Q ss_pred             EEEEEeeeCCCccEEEEEcCCCe-EEEEECCCCeEEEEeccCCCCE--EEEEEecCCCEEEEE-----eCCCCEEEEeCC
Q psy4650          81 VNCVDYYHGGDKPYLISGADDRL-VKIWDYQNKTCVQTLEGHGQNI--SAVCFHPELPIVITG-----SEDGSVRVWHSG  152 (381)
Q Consensus        81 v~~~~~~~~~~~~~l~s~~~d~~-v~vwd~~~~~~~~~~~~~~~~v--~~~~~~p~~~~l~s~-----~~d~~i~vwd~~  152 (381)
                      ...++.+|... ..++.+-.-|+ ..+||..++.....+....+.-  -.-.|+|+|++|.+.     ...|.|-|||..
T Consensus         7 gH~~a~~p~~~-~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~   85 (305)
T PF07433_consen    7 GHGVAAHPTRP-EAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAA   85 (305)
T ss_pred             ccceeeCCCCC-eEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECc
Confidence            34566777433 26666666664 5689999998777665433321  135799999988876     336889999999


Q ss_pred             -CCeeeEEEecCCcceEEEEEcCCCCEEEEEe-------CCCeEEEEecCCCc-eEEEecCCCEEEEEec--Cceeeccc
Q psy4650         153 -THRLEISLTYGLERVWTISSLKGSNNVAIGY-------DEGSVLLKVGREEP-AVSMDVNGCKIIWARH--SEVQQANL  221 (381)
Q Consensus       153 -~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~-------~dg~v~i~~~~~~~-~~~~d~~~~~~~~~~~--~~~~~~~~  221 (381)
                       +...+..+..+.-..-.+.+.|+|..|+++-       +.|..++....+++ +...|..+|.++-...  .+.+..++
T Consensus        86 ~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSi  165 (305)
T PF07433_consen   86 RGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSI  165 (305)
T ss_pred             CCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccce
Confidence             6677778877766677788999997776653       23566776555444 5566788888775432  23333333


Q ss_pred             ccCCccccccCCceEEeee
Q psy4650         222 KTMPEVFENITAGVVLTLS  240 (381)
Q Consensus       222 ~~~~~~~~~~~dg~~l~~~  240 (381)
                      ..    ++..++|..+.-.
T Consensus       166 RH----La~~~~G~V~~a~  180 (305)
T PF07433_consen  166 RH----LAVDGDGTVAFAM  180 (305)
T ss_pred             ee----EEecCCCcEEEEE
Confidence            22    3445666655433

>KOG1645|consensus

Probab=96.81  E-value=0.0046  Score=54.48  Aligned_cols=87  Identities=18%  Similarity=0.230  Sum_probs=69.6

Q ss_pred             EEEEECCCCeEEEEeccCCCCEEEEEEecCCC-EEEEEeCCCCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCC-EEEE
Q psy4650         104 VKIWDYQNKTCVQTLEGHGQNISAVCFHPELP-IVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSN-NVAI  181 (381)
Q Consensus       104 v~vwd~~~~~~~~~~~~~~~~v~~~~~~p~~~-~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~-~l~~  181 (381)
                      |++.+..+-+...-+.+|...|..++|+|... ++..++.+..|+|.|+.+...+.++..+ ..+++++|.-+.. ++.+
T Consensus       175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYa  253 (463)
T KOG1645|consen  175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYA  253 (463)
T ss_pred             eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEE
Confidence            44444444444555667788899999999887 6778889999999999999988888877 8899999998754 6777


Q ss_pred             EeCCCeEEEE
Q psy4650         182 GYDEGSVLLK  191 (381)
Q Consensus       182 ~~~dg~v~i~  191 (381)
                      |..+|.|.++
T Consensus       254 Gl~nG~Vlvy  263 (463)
T KOG1645|consen  254 GLQNGMVLVY  263 (463)
T ss_pred             eccCceEEEE
Confidence            7889999993

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=96.74  E-value=0.089  Score=48.83  Aligned_cols=122  Identities=12%  Similarity=0.159  Sum_probs=73.2

Q ss_pred             eEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEE--ECCCCeEEEEeccCCCCEEEEEEecCC
Q psy4650          57 RVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIW--DYQNKTCVQTLEGHGQNISAVCFHPEL  134 (381)
Q Consensus        57 ~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vw--d~~~~~~~~~~~~~~~~v~~~~~~p~~  134 (381)
                      .+.++++.......+.+..++.   ...+|+|+|.+ ++.+...||...+|  |+.++...+ +....+.-..-.|+|+|
T Consensus       219 ~i~~~~l~~g~~~~i~~~~g~~---~~P~fspDG~~-l~f~~~rdg~~~iy~~dl~~~~~~~-Lt~~~gi~~~Ps~spdG  293 (425)
T COG0823         219 RIYYLDLNTGKRPVILNFNGNN---GAPAFSPDGSK-LAFSSSRDGSPDIYLMDLDGKNLPR-LTNGFGINTSPSWSPDG  293 (425)
T ss_pred             eEEEEeccCCccceeeccCCcc---CCccCCCCCCE-EEEEECCCCCccEEEEcCCCCccee-cccCCccccCccCCCCC
Confidence            4777777655544444544443   35689999974 66677778876554  666665333 43323333467899999


Q ss_pred             CEEEEEeC-CCC--EEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeC
Q psy4650         135 PIVITGSE-DGS--VRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYD  184 (381)
Q Consensus       135 ~~l~s~~~-d~~--i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~  184 (381)
                      +.++-.+. .|.  |.+.|..++.. ..+......-..-.|+|+|++++..+.
T Consensus       294 ~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~~~p~~SpdG~~i~~~~~  345 (425)
T COG0823         294 SKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGNSNPVWSPDGDKIVFESS  345 (425)
T ss_pred             CEEEEEeCCCCCcceEEECCCCCce-eEeeccCCCCcCccCCCCCCEEEEEec
Confidence            97665543 444  55556665554 222222222226778999998888774

>KOG2444|consensus

Probab=96.73  E-value=0.0095  Score=48.74  Aligned_cols=105  Identities=11%  Similarity=0.087  Sum_probs=65.0

Q ss_pred             CceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCC-ccEEEEEcCCCeEEEEECCCCeEEEEeccCC-
Q psy4650          45 MIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGD-KPYLISGADDRLVKIWDYQNKTCVQTLEGHG-  122 (381)
Q Consensus        45 ~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~-~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~-  122 (381)
                      ...-++.|..+|.|++|.+.. ..........-...|.++-  |.+. ..+..+++.|+.++.|++...+.+.....|+ 
T Consensus        69 ~~~~~~vG~~dg~v~~~n~n~-~g~~~d~~~s~~e~i~~~I--p~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~  145 (238)
T KOG2444|consen   69 ASAKLMVGTSDGAVYVFNWNL-EGAHSDRVCSGEESIDLGI--PNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNF  145 (238)
T ss_pred             cCceEEeecccceEEEecCCc-cchHHHhhhcccccceecc--ccccccceeEEeccCCceeeeccccCceeeeeccccC
Confidence            345688899999999998752 1111111111222333322  2222 2377899999999999999988887777777 


Q ss_pred             CCEEEEEEecCCCEEEEE--eCCCCEEEEeCC
Q psy4650         123 QNISAVCFHPELPIVITG--SEDGSVRVWHSG  152 (381)
Q Consensus       123 ~~v~~~~~~p~~~~l~s~--~~d~~i~vwd~~  152 (381)
                      .++.....+-.+..++..  |.|..++.|++.
T Consensus       146 ~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve  177 (238)
T KOG2444|consen  146 ESGEELIVVGSDEFLKIADTSHDRVLKKWNVE  177 (238)
T ss_pred             CCcceeEEecCCceEEeeccccchhhhhcchh
Confidence            455555555555555555  666666666664

>KOG1920|consensus

Probab=96.72  E-value=0.071  Score=53.88  Aligned_cols=145  Identities=8%  Similarity=0.035  Sum_probs=87.0

Q ss_pred             eecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEEC----CC----
Q psy4650          40 TTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDY----QN----  111 (381)
Q Consensus        40 ~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~----~~----  111 (381)
                      .+..+... ++-+...|.|.+-|+++....+   ...-...|.+++|+|+++  .++-....+++.+...    -.    
T Consensus        75 ~fl~d~~~-i~v~~~~G~iilvd~et~~~ei---vg~vd~GI~aaswS~Dee--~l~liT~~~tll~mT~~f~~i~E~~L  148 (1265)
T KOG1920|consen   75 QFLADTNS-ICVITALGDIILVDPETLELEI---VGNVDNGISAASWSPDEE--LLALITGRQTLLFMTKDFEPIAEKPL  148 (1265)
T ss_pred             EEecccce-EEEEecCCcEEEEcccccceee---eeeccCceEEEeecCCCc--EEEEEeCCcEEEEEeccccchhcccc
Confidence            34444333 3445667788888986533333   333467899999999887  7777777778776433    11    


Q ss_pred             ---------------CeEEEEeccCC---------------------CCEEEEEEecCCCEEEEEe----CC-CCEEEEe
Q psy4650         112 ---------------KTCVQTLEGHG---------------------QNISAVCFHPELPIVITGS----ED-GSVRVWH  150 (381)
Q Consensus       112 ---------------~~~~~~~~~~~---------------------~~v~~~~~~p~~~~l~s~~----~d-~~i~vwd  150 (381)
                                     |+....|.|..                     +.=..++|.-||.++|...    .+ +.++|||
T Consensus       149 ~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~d  228 (1265)
T KOG1920|consen  149 DADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYD  228 (1265)
T ss_pred             ccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEec
Confidence                           11111222111                     1124589999999888732    24 8999999


Q ss_pred             CCCCeeeEEEecCCcceEEEEEcCCCCEEEEEe---CCCeEEEE
Q psy4650         151 SGTHRLEISLTYGLERVWTISSLKGSNNVAIGY---DEGSVLLK  191 (381)
Q Consensus       151 ~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~---~dg~v~i~  191 (381)
                      .. |.+-.+-......-.+++|-|.|..+++-.   +|+.|.++
T Consensus       229 rE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~Ivff  271 (1265)
T KOG1920|consen  229 RE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFF  271 (1265)
T ss_pred             cc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEE
Confidence            87 443322222333445799999998887753   34456653

>KOG2079|consensus

Probab=96.64  E-value=0.0096  Score=59.02  Aligned_cols=94  Identities=17%  Similarity=0.237  Sum_probs=69.6

Q ss_pred             EEEEEcCCCeEEEEECCCC-eEEEEeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEecCCcceEEE--
Q psy4650          94 YLISGADDRLVKIWDYQNK-TCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTI--  170 (381)
Q Consensus        94 ~l~s~~~d~~v~vwd~~~~-~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~v--  170 (381)
                      .++.|+..|.+-..|..+. .+...=..-.++|.+++|+.+|..++.|-.+|.|.+||...++....+..+..+...+  
T Consensus       101 ~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~  180 (1206)
T KOG2079|consen  101 PIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIF  180 (1206)
T ss_pred             eEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEEE
Confidence            5788888999988887653 1111112235789999999999999999999999999999999988887766555444  


Q ss_pred             -EEcCCCCEEEEEeCCCe
Q psy4650         171 -SSLKGSNNVAIGYDEGS  187 (381)
Q Consensus       171 -~~~~~~~~l~~~~~dg~  187 (381)
                       .+..++..+.++..-|.
T Consensus       181 v~~t~~nS~llt~D~~Gs  198 (1206)
T KOG2079|consen  181 VGRTSQNSKLLTSDTGGS  198 (1206)
T ss_pred             EEEeCCCcEEEEccCCCc
Confidence             44455666666666664

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=96.63  E-value=0.14  Score=47.46  Aligned_cols=151  Identities=12%  Similarity=0.080  Sum_probs=84.5

Q ss_pred             EEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEEEeccCCCCEE-
Q psy4650          48 YKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNIS-  126 (381)
Q Consensus        48 ~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~-  126 (381)
                      .++.+..++.+..+|..+  ...+...+.. +.+.+-....+ .  .++.+..++.+..+|..+|+.+..+........ 
T Consensus       122 ~v~v~~~~g~l~ald~~t--G~~~W~~~~~-~~~~ssP~v~~-~--~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~  195 (394)
T PRK11138        122 KVYIGSEKGQVYALNAED--GEVAWQTKVA-GEALSRPVVSD-G--LVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTL  195 (394)
T ss_pred             EEEEEcCCCEEEEEECCC--CCCcccccCC-CceecCCEEEC-C--EEEEECCCCEEEEEEccCCCEeeeecCCCCcccc
Confidence            345566788888898764  2333333222 22222111112 2  466778899999999999998877754211100 


Q ss_pred             EEEEec--CCCEEEEEeCCCCEEEEeCCCCeeeEEEecCCc-------ceEEEEEcC--CCCEEEEEeCCCeEEEEecCC
Q psy4650         127 AVCFHP--ELPIVITGSEDGSVRVWHSGTHRLEISLTYGLE-------RVWTISSLK--GSNNVAIGYDEGSVLLKVGRE  195 (381)
Q Consensus       127 ~~~~~p--~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~-------~v~~v~~~~--~~~~l~~~~~dg~v~i~~~~~  195 (381)
                      ...-+|  .+..++.++.++.+..+|..+|+.++.......       ....+..+|  .+..+..++.+|.+..     
T Consensus       196 ~~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~a-----  270 (394)
T PRK11138        196 RGESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVA-----  270 (394)
T ss_pred             cCCCCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEE-----
Confidence            000011  123466677788999999999987766532110       001111122  1334444455555544     


Q ss_pred             CceEEEecCCCEEEEEecC
Q psy4650         196 EPAVSMDVNGCKIIWARHS  214 (381)
Q Consensus       196 ~~~~~~d~~~~~~~~~~~~  214 (381)
                           +|..+|..+|....
T Consensus       271 -----ld~~tG~~~W~~~~  284 (394)
T PRK11138        271 -----LDLRSGQIVWKREY  284 (394)
T ss_pred             -----EECCCCCEEEeecC
Confidence                 99999999998643

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=96.63  E-value=0.028  Score=52.27  Aligned_cols=136  Identities=9%  Similarity=-0.001  Sum_probs=74.0

Q ss_pred             ceeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEE
Q psy4650          36 KVDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCV  115 (381)
Q Consensus        36 ~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~  115 (381)
                      |..+.-+|.+.-+++  ..+|...+|....  ..   .  ...+.-....|++++   .+|.-...++|.++.--.....
T Consensus        35 p~~ls~npngr~v~V--~g~geY~iyt~~~--~r---~--k~~G~g~~~vw~~~n---~yAv~~~~~~I~I~kn~~~~~~  102 (443)
T PF04053_consen   35 PQSLSHNPNGRFVLV--CGDGEYEIYTALA--WR---N--KAFGSGLSFVWSSRN---RYAVLESSSTIKIYKNFKNEVV  102 (443)
T ss_dssp             -SEEEE-TTSSEEEE--EETTEEEEEETTT--TE---E--EEEEE-SEEEE-TSS---EEEEE-TTS-EEEEETTEE-TT
T ss_pred             CeeEEECCCCCEEEE--EcCCEEEEEEccC--Cc---c--cccCceeEEEEecCc---cEEEEECCCeEEEEEcCccccc
Confidence            566777776554444  5567888887421  11   1  113445567888743   4777777888998633222222


Q ss_pred             EEeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCCCeEEE
Q psy4650         116 QTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLL  190 (381)
Q Consensus       116 ~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i  190 (381)
                      ..++.. ..+..+-.   |..|...+.+ .|.+||+.+++.+..+...  .|..|.|+++|.+++..+.+....+
T Consensus       103 k~i~~~-~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~~i~il  170 (443)
T PF04053_consen  103 KSIKLP-FSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKDSIYIL  170 (443)
T ss_dssp             -----S-S-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S-SEEEE
T ss_pred             eEEcCC-cccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCCeEEEE
Confidence            233321 12333322   7777766655 8999999999999988743  3899999999999999988766655

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG3617|consensus

Probab=96.58  E-value=0.0051  Score=59.35  Aligned_cols=104  Identities=15%  Similarity=0.172  Sum_probs=75.7

Q ss_pred             EeeeCCCccEEEEEc----CCCeEEEEECCCCeEEEEeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEE
Q psy4650          85 DYYHGGDKPYLISGA----DDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISL  160 (381)
Q Consensus        85 ~~~~~~~~~~l~s~~----~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~  160 (381)
                      .|+|..  ++++.++    ..|+|.||- .+|++.+... ..-.+.+++|||..-.|+.|=.-|.+.+|...+.+.-...
T Consensus        22 SWHPse--PlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt-~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~   97 (1416)
T KOG3617|consen   22 SWHPSE--PLFAVASFSPERGGSVTIFA-DTGEPQRDVT-YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVV   97 (1416)
T ss_pred             ccCCCC--ceeEEEEecCCCCceEEEEe-cCCCCCcccc-cceehhhhccChHHHHHhhccccceeEEEecCCceeeeec
Confidence            455533  2554443    356777764 3454433221 1112467999999888888888999999998877665556


Q ss_pred             ecCCcceEEEEEcCCCCEEEEEeCCCeEEEEe
Q psy4650         161 TYGLERVWTISSLKGSNNVAIGYDEGSVLLKV  192 (381)
Q Consensus       161 ~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~  192 (381)
                      ..|...+..+.|+|+|..+.++..-|.+.+|.
T Consensus        98 ~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr  129 (1416)
T KOG3617|consen   98 ETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWR  129 (1416)
T ss_pred             cCCCCCceeEEecCCCCeEEEcCCCceeEEEE
Confidence            66899999999999999999999999999987

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.42  E-value=0.011  Score=35.78  Aligned_cols=33  Identities=24%  Similarity=0.543  Sum_probs=29.3

Q ss_pred             CCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCe
Q psy4650         122 GQNISAVCFHPELPIVITGSEDGSVRVWHSGTHR  155 (381)
Q Consensus       122 ~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~  155 (381)
                      ...|.+++|+|...++|.+..+|.|.++.+ +++
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~q   43 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQ   43 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCc
Confidence            457999999999999999999999999998 444

>KOG1920|consensus

Probab=96.39  E-value=0.026  Score=56.79  Aligned_cols=122  Identities=12%  Similarity=0.188  Sum_probs=77.0

Q ss_pred             EEEeeeCCCccEEEEE----cCC-CeEEEEECCCCeEEEEeccCCCCEEEEEEecCCCEEEEE---eCCCCEEEEeCCC-
Q psy4650          83 CVDYYHGGDKPYLISG----ADD-RLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPIVITG---SEDGSVRVWHSGT-  153 (381)
Q Consensus        83 ~~~~~~~~~~~~l~s~----~~d-~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~---~~d~~i~vwd~~~-  153 (381)
                      ++.|--||+  +++..    ..+ +.+++||-. |..-.+-....+.=.+++|-|.|..+++-   +.|+.|.++.-.+ 
T Consensus       200 ~IsWRgDg~--~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL  276 (1265)
T KOG1920|consen  200 SISWRGDGE--YFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGL  276 (1265)
T ss_pred             eEEEccCCc--EEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCc
Confidence            477765555  67652    234 899999976 43211111122233789999999988875   3466899997543 


Q ss_pred             --CeeeEEEecCCcceEEEEEcCCCCEEEE---EeCCCeEEEEecCC-------------CceEEEecCCCE
Q psy4650         154 --HRLEISLTYGLERVWTISSLKGSNNVAI---GYDEGSVLLKVGRE-------------EPAVSMDVNGCK  207 (381)
Q Consensus       154 --~~~~~~~~~~~~~v~~v~~~~~~~~l~~---~~~dg~v~i~~~~~-------------~~~~~~d~~~~~  207 (381)
                        |.....++.....|..++|+.++..|+.   ......+.+|...+             .....||+.+..
T Consensus       277 ~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~~~~~~W~p~~~~  348 (1265)
T KOG1920|consen  277 RHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQELQFSQKALLMWDPVTEK  348 (1265)
T ss_pred             cccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeEEEEEEEEeccccccccccCCCce
Confidence              3333333334445899999999999888   44555588887433             334567775544

>KOG3617|consensus

Probab=96.37  E-value=0.0058  Score=58.99  Aligned_cols=70  Identities=14%  Similarity=0.217  Sum_probs=61.1

Q ss_pred             EEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEEEeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCC
Q psy4650          81 VNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSG  152 (381)
Q Consensus        81 v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~  152 (381)
                      +++++|+|.  +-.|+.|-..|.+.+|...+.+.-.....|..++..+.|+|+|..++++..-|.+.+|...
T Consensus        62 atSLCWHpe--~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   62 ATSLCWHPE--EFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             hhhhccChH--HHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence            467999994  4478899999999999988877666667799999999999999999999999999999765

>KOG2395|consensus

Probab=96.33  E-value=0.077  Score=48.93  Aligned_cols=143  Identities=15%  Similarity=0.107  Sum_probs=92.1

Q ss_pred             CCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEE-----EEEcCCCeEEEEECCCCe--EEE
Q psy4650          44 DMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYL-----ISGADDRLVKIWDYQNKT--CVQ  116 (381)
Q Consensus        44 ~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l-----~s~~~d~~v~vwd~~~~~--~~~  116 (381)
                      +..-++.++.....++-.|++  ...++...+-|.+ |.-+.+.|+.....+     ..|-.|..|.-||.+-..  .+.
T Consensus       344 dsnlil~~~~~~~~l~klDIE--~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~  420 (644)
T KOG2395|consen  344 DSNLILMDGGEQDKLYKLDIE--RGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLA  420 (644)
T ss_pred             ccceEeeCCCCcCcceeeecc--cceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceee
Confidence            334456666666677777776  3556666666655 666666665543233     345567788888876322  222


Q ss_pred             EeccCC----CCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCCCeEEE
Q psy4650         117 TLEGHG----QNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLL  190 (381)
Q Consensus       117 ~~~~~~----~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i  190 (381)
                      ...+|.    ....|.+-. ...+++.||.+|.||+||--..+....+++....|..|..+.+|+++++.+..-.+.+
T Consensus       421 ~~q~kqy~~k~nFsc~aTT-~sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~tyLlLi  497 (644)
T KOG2395|consen  421 VVQSKQYSTKNNFSCFATT-ESGYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATCKTYLLLI  497 (644)
T ss_pred             eeeccccccccccceeeec-CCceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEecccEEEEE
Confidence            223321    123344333 2348899999999999998544455567888899999999999999888776555444

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=96.27  E-value=0.095  Score=51.90  Aligned_cols=138  Identities=12%  Similarity=0.075  Sum_probs=88.5

Q ss_pred             EEEEEecCCeEEEecCCCccceeeEeecccccc-EEEEEeee-----CCCccEEEEEcCCCeEEEEECCCCe--EEE-Ee
Q psy4650          48 YKISYQESSRVKAFNPIQVATLILKTLYGHEKG-VNCVDYYH-----GGDKPYLISGADDRLVKIWDYQNKT--CVQ-TL  118 (381)
Q Consensus        48 ~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~-v~~~~~~~-----~~~~~~l~s~~~d~~v~vwd~~~~~--~~~-~~  118 (381)
                      ++........++..|++  .+.++...+-|... |.+++-..     .++  ....|-.+..+..||.+-..  .+. ..
T Consensus       496 il~~~~~~~~ly~mDLe--~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e--~tflGls~n~lfriDpR~~~~k~v~~~~  571 (794)
T PF08553_consen  496 ILLDPNNPNKLYKMDLE--RGKVVEEWKVHDDIPVVDIAPDSKFAQLTNE--QTFLGLSDNSLFRIDPRLSGNKLVDSQS  571 (794)
T ss_pred             EeecCCCCCceEEEecC--CCcEEEEeecCCCcceeEecccccccccCCC--ceEEEECCCceEEeccCCCCCceeeccc
Confidence            44444455677777776  35666777766644 55553211     112  34566778888889987532  221 11


Q ss_pred             c--cCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCCCeEEE
Q psy4650         119 E--GHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLL  190 (381)
Q Consensus       119 ~--~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i  190 (381)
                      +  .......|++-+.+| ++|.|+.+|.||+||--+.+....+++-..+|.+|..+.+|+++++.|..-.+.+
T Consensus       572 k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~tyLlLi  644 (794)
T PF08553_consen  572 KQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCKTYLLLI  644 (794)
T ss_pred             cccccCCCceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeecceEEEE
Confidence            1  122345666655444 7899999999999996544444456677799999999999999988886555554

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=96.20  E-value=0.21  Score=46.34  Aligned_cols=154  Identities=16%  Similarity=0.080  Sum_probs=89.4

Q ss_pred             eeccccccEEEEEeeeCCCccEEEEEcCC--CeEEEEECCCCeEEEEeccCCCCEEEEEEecCCCEEEEE-eCCCC--EE
Q psy4650          73 TLYGHEKGVNCVDYYHGGDKPYLISGADD--RLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPIVITG-SEDGS--VR  147 (381)
Q Consensus        73 ~l~~h~~~v~~~~~~~~~~~~~l~s~~~d--~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~-~~d~~--i~  147 (381)
                      .+..-...+..-.|+|++..-..++-...  ..+.++++.++....... ..+.-...+|+|+|+.++-+ ..|+.  |.
T Consensus       187 ~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~iy  265 (425)
T COG0823         187 KLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDIY  265 (425)
T ss_pred             EecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCccEE
Confidence            33334456777789998874222222222  468899998886443333 22333677899999966644 44664  55


Q ss_pred             EEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeC-CCeEEEEecCCCceEEEecCCCEEEEEecCceeecccccCCc
Q psy4650         148 VWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYD-EGSVLLKVGREEPAVSMDVNGCKIIWARHSEVQQANLKTMPE  226 (381)
Q Consensus       148 vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~-dg~v~i~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~  226 (381)
                      +.|+.+++... +....+.-..=.|+|+|+.++..++ .|.-.+        +.++.+++... .+........   .  
T Consensus       266 ~~dl~~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I--------~~~~~~g~~~~-riT~~~~~~~---~--  330 (425)
T COG0823         266 LMDLDGKNLPR-LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQI--------YLYDLEGSQVT-RLTFSGGGNS---N--  330 (425)
T ss_pred             EEcCCCCccee-cccCCccccCccCCCCCCEEEEEeCCCCCcce--------EEECCCCCcee-EeeccCCCCc---C--
Confidence            66777776433 5444444446789999998877664 333333        33666555431 1111111111   1  


Q ss_pred             cccccCCceEEeeehHH
Q psy4650         227 VFENITAGVVLTLSVHV  243 (381)
Q Consensus       227 ~~~~~~dg~~l~~~~~d  243 (381)
                       -.++|||..+++....
T Consensus       331 -p~~SpdG~~i~~~~~~  346 (425)
T COG0823         331 -PVWSPDGDKIVFESSS  346 (425)
T ss_pred             -ccCCCCCCEEEEEecc
Confidence             2568999999988843

>PRK13929 rod-share determining protein MreBH; Provisional

Probab=96.18  E-value=0.0048  Score=55.57  Aligned_cols=112  Identities=10%  Similarity=0.054  Sum_probs=78.7

Q ss_pred             HHHhhhhhhccccc----eeeEEEe--cccCCcccccccChHHHHHHHHHHhhhhhhhhHhhhccccceeeEeeccc-cC
Q psy4650         263 AAAETCMHVLSTLQ----SSNVFVE--SLYDGLDFHHNVSRARFESLIGGLLTSFVQPCMHVLSTLQSSNVFVESLY-DG  335 (381)
Q Consensus       263 ~~~e~ak~~lS~~~----~~~i~~~--~l~~g~~~~~~itr~~fe~l~~~l~~~~~~~~~~~Ls~~~~~~~~~~~~~-~~  335 (381)
                      ..+|+.|+.++...    ...+.+.  .+..+......++|++|++++.+++.++.+.+++.|..... .+.-+.+. +.
T Consensus       204 ~~AE~iK~~l~~~~~~~~~~~~~v~g~~~~~~~p~~i~i~~~~~~~~i~~~l~~i~~~i~~~L~~~~~-~l~~~~~~~gI  282 (335)
T PRK13929        204 RTAEQVKMEIGYALIEHEPETMEVRGRDLVTGLPKTITLESKEIQGAMRESLLHILEAIRATLEDCPP-ELSGDIVDRGV  282 (335)
T ss_pred             HHHHHHHHHHcCCCCCCCCceEEEeCCccCCCCCeEEEEcHHHHHHHHHHHHHHHHHHHHHHHHhCCc-ccchhhcCCCE
Confidence            46788898887632    1223332  23345556788999999999999999999999999987431 12224444 46


Q ss_pred             cceEEeecHHHHHHHHHHHHHH----hHHHHHHHHHhCCCCccc
Q psy4650         336 LDFHHNVSRARFESLIGGLLTS----FVQPIEDVLSRSNITHDQ  375 (381)
Q Consensus       336 ~~~~~~~~~~~~e~~~~~~~~~----~~~~~~~~l~~~~~~~~~  375 (381)
                      ++.||+...|.|.+++++.|+.    ..+|.+.+..-|+.-.++
T Consensus       283 vLtGG~s~lpgl~e~l~~~~~~~v~~~~~P~~~Va~Ga~~~~~~  326 (335)
T PRK13929        283 ILTGGGALLNGIKEWLSEEIVVPVHVAANPLESVAIGTGRSLEV  326 (335)
T ss_pred             EEEchhhhhhhHHHHHHHHHCCCceeCCCHHHHHHHHHHHHHHC
Confidence            7889999999999999999973    246776666555544433

>KOG2079|consensus

Probab=96.18  E-value=0.023  Score=56.52  Aligned_cols=101  Identities=18%  Similarity=0.280  Sum_probs=72.0

Q ss_pred             ceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEEEeccCCCCE
Q psy4650          46 IEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNI  125 (381)
Q Consensus        46 ~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v  125 (381)
                      ...++.|+..|.+-.+|....-.. ++.=..-.++|++++|+.+|.  .++.|-.+|.|.+||...++.++.+..|..+.
T Consensus        99 ~~~ivi~Ts~ghvl~~d~~~nL~~-~~~ne~v~~~Vtsvafn~dg~--~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~  175 (1206)
T KOG2079|consen   99 VVPIVIGTSHGHVLLSDMTGNLGP-LHQNERVQGPVTSVAFNQDGS--LLLAGLGDGHVTVWDMHRAKILKVITEHGAPV  175 (1206)
T ss_pred             eeeEEEEcCchhhhhhhhhcccch-hhcCCccCCcceeeEecCCCc--eeccccCCCcEEEEEccCCcceeeeeecCCcc
Confidence            445777888888888887542221 122122357999999999887  78889999999999999999888887776665


Q ss_pred             EE---EEEecCCCEEEEEeCCCCEEEEeC
Q psy4650         126 SA---VCFHPELPIVITGSEDGSVRVWHS  151 (381)
Q Consensus       126 ~~---~~~~p~~~~l~s~~~d~~i~vwd~  151 (381)
                      ..   +.+..++..+.++...|.  +|.+
T Consensus       176 t~vi~v~~t~~nS~llt~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  176 TGVIFVGRTSQNSKLLTSDTGGS--FWKL  202 (1206)
T ss_pred             ceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence            54   445556667777766665  5543

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.00  E-value=0.023  Score=34.37  Aligned_cols=27  Identities=30%  Similarity=0.404  Sum_probs=24.9

Q ss_pred             CcceEEEEEcCCCCEEEEEeCCCeEEE
Q psy4650         164 LERVWTISSLKGSNNVAIGYDEGSVLL  190 (381)
Q Consensus       164 ~~~v~~v~~~~~~~~l~~~~~dg~v~i  190 (381)
                      ...|.+++|+|....+|.++.+|.+.+
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v   37 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLV   37 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEE
Confidence            356889999999999999999999998

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=95.99  E-value=0.074  Score=52.63  Aligned_cols=100  Identities=12%  Similarity=0.247  Sum_probs=70.2

Q ss_pred             EEEEEecCCeEEEecCCCccceeeE-ee--ccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEEEeccCCCC
Q psy4650          48 YKISYQESSRVKAFNPIQVATLILK-TL--YGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQN  124 (381)
Q Consensus        48 ~~~s~~~d~~v~i~~~~~~~~~~~~-~l--~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~  124 (381)
                      -.+.|-.++.+..|||+.....++. ..  ........|++-+.+|   +||.|+.+|.||+||-...+....+.+-..+
T Consensus       544 ~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G---~iavgs~~G~IRLyd~~g~~AKT~lp~lG~p  620 (794)
T PF08553_consen  544 QTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTEDG---YIAVGSNKGDIRLYDRLGKRAKTALPGLGDP  620 (794)
T ss_pred             ceEEEECCCceEEeccCCCCCceeeccccccccCCCceEEEecCCc---eEEEEeCCCcEEeecccchhhhhcCCCCCCC
Confidence            3455667778999999754323321 11  1233457777776655   5999999999999995444444556777899


Q ss_pred             EEEEEEecCCCEEEEEeCCCCEEEEeC
Q psy4650         125 ISAVCFHPELPIVITGSEDGSVRVWHS  151 (381)
Q Consensus       125 v~~~~~~p~~~~l~s~~~d~~i~vwd~  151 (381)
                      |.+|..+.+|+++++.+ +..+.+++.
T Consensus       621 I~~iDvt~DGkwilaTc-~tyLlLi~t  646 (794)
T PF08553_consen  621 IIGIDVTADGKWILATC-KTYLLLIDT  646 (794)
T ss_pred             eeEEEecCCCcEEEEee-cceEEEEEE
Confidence            99999999999766554 457778775

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=95.87  E-value=0.16  Score=47.04  Aligned_cols=110  Identities=13%  Similarity=0.105  Sum_probs=69.5

Q ss_pred             EEEEEcCCCeEEEEECCCCeEEEEeccCCC-CEE------EEEEec--CCCEEEEEeCCCCEEEEeCCCCeeeEEEecCC
Q psy4650          94 YLISGADDRLVKIWDYQNKTCVQTLEGHGQ-NIS------AVCFHP--ELPIVITGSEDGSVRVWHSGTHRLEISLTYGL  164 (381)
Q Consensus        94 ~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~-~v~------~~~~~p--~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~  164 (381)
                      .+..++.++.+..+|..+|+.+........ ...      .+.-.|  .+..+..++.++.+.-+|..+|+.++......
T Consensus        71 ~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~  150 (394)
T PRK11138         71 KVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQTKVAG  150 (394)
T ss_pred             EEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCcccccCCC
Confidence            577788889999999999988776643220 000      000011  34566777789999999999999988776432


Q ss_pred             cceEEEEEcCCCCEEEEEeCCCeEEEEecCCCceEEEecCCCEEEEEecCc
Q psy4650         165 ERVWTISSLKGSNNVAIGYDEGSVLLKVGREEPAVSMDVNGCKIIWARHSE  215 (381)
Q Consensus       165 ~~v~~v~~~~~~~~l~~~~~dg~v~i~~~~~~~~~~~d~~~~~~~~~~~~~  215 (381)
                      . +.+--.. .+..+..+..+|.+..          +|..+|+.+|.....
T Consensus       151 ~-~~ssP~v-~~~~v~v~~~~g~l~a----------ld~~tG~~~W~~~~~  189 (394)
T PRK11138        151 E-ALSRPVV-SDGLVLVHTSNGMLQA----------LNESDGAVKWTVNLD  189 (394)
T ss_pred             c-eecCCEE-ECCEEEEECCCCEEEE----------EEccCCCEeeeecCC
Confidence            2 2111000 1233444555555544          999999999998654

>KOG1008|consensus

Probab=95.86  E-value=0.0018  Score=60.35  Aligned_cols=143  Identities=13%  Similarity=0.139  Sum_probs=97.5

Q ss_pred             ceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEE----cCCCeEEEEECCCC--eEE--EE
Q psy4650          46 IEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISG----ADDRLVKIWDYQNK--TCV--QT  117 (381)
Q Consensus        46 ~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~----~~d~~v~vwd~~~~--~~~--~~  117 (381)
                      ..+++.|..+|.|-+-........-.....+|..+.++++|++-.. +.||.|    -.|..+.+||+.++  .+.  ..
T Consensus        70 ~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDt-n~LAagldkhrnds~~~Iwdi~s~ltvPke~~~  148 (783)
T KOG1008|consen   70 RCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDT-NHLAAGLDKHRNDSSLKIWDINSLLTVPKESPL  148 (783)
T ss_pred             hhhhhhccccCceEEeecCCcccccceecccccccccccccccccH-HHHHhhhhhhcccCCccceecccccCCCccccc
Confidence            4688889999999988775433222345678889999999998533 256665    23678999999876  221  12


Q ss_pred             ecc-CCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCee-eEEEecCCcceEEEEEcC-CCCEEEEEeCCCeEEEEe
Q psy4650         118 LEG-HGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRL-EISLTYGLERVWTISSLK-GSNNVAIGYDEGSVLLKV  192 (381)
Q Consensus       118 ~~~-~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~-~~~~~~~~~~v~~v~~~~-~~~~l~~~~~dg~v~i~~  192 (381)
                      +.+ ......+++|-.+.+.+.+|...+.+.++|++.... ...+  .+..+..+...| .+.++++-. ||.+-+|+
T Consensus       149 fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv--nTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD  223 (783)
T KOG1008|consen  149 FSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV--NTKYVQGITVDPFSPNYFCSNS-DGDIAIWD  223 (783)
T ss_pred             cccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh--hhhhcccceecCCCCCceeccc-cCceeecc
Confidence            222 334556888988888999999999999999983221 1111  223455567777 566666555 99999976

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=95.86  E-value=1.5  Score=40.44  Aligned_cols=157  Identities=15%  Similarity=0.176  Sum_probs=101.1

Q ss_pred             EEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEEEeccCCCCEEEEEEecCCCEEEEEeC---CCCEEEEeCCCCeee
Q psy4650          81 VNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPIVITGSE---DGSVRVWHSGTHRLE  157 (381)
Q Consensus        81 v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~---d~~i~vwd~~~~~~~  157 (381)
                      -..+..++.+.+ ..+....+..|.+.|..+........--. ....++++|++..+..+..   ++++.+.|-.+++..
T Consensus        76 p~~i~v~~~~~~-vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~  153 (381)
T COG3391          76 PAGVAVNPAGNK-VYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVT  153 (381)
T ss_pred             ccceeeCCCCCe-EEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEE
Confidence            346677777664 56666678999999977776665554222 4588999999986555543   789999999999888


Q ss_pred             EEEecCCcceEEEEEcCCCCEEEEEe-CCCeEEEEecCCCceEEEecCCCEEEEEecCceeecccccCCccccccCCceE
Q psy4650         158 ISLTYGLERVWTISSLKGSNNVAIGY-DEGSVLLKVGREEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGVV  236 (381)
Q Consensus       158 ~~~~~~~~~v~~v~~~~~~~~l~~~~-~dg~v~i~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~  236 (381)
                      .+......+ ..+++.|+|..+..+. .++.+.+          +|..+.. ++. ............+....+.|+|..
T Consensus       154 ~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~v----------i~~~~~~-v~~-~~~~~~~~~~~~P~~i~v~~~g~~  220 (381)
T COG3391         154 ATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSV----------IDTSGNS-VVR-GSVGSLVGVGTGPAGIAVDPDGNR  220 (381)
T ss_pred             EEEecCCCc-ceEEECCCCCeEEEEecCCCeEEE----------EeCCCcc-eec-cccccccccCCCCceEEECCCCCE
Confidence            876554444 8899999999665554 6777777          6654333 222 222222233333344567788887


Q ss_pred             EeeehHHH---HHhccCCC
Q psy4650         237 LTLSVHVT---IKYRLDIS  252 (381)
Q Consensus       237 l~~~~~d~---~~~~~d~~  252 (381)
                      +.......   .....+..
T Consensus       221 ~yV~~~~~~~~~v~~id~~  239 (381)
T COG3391         221 VYVANDGSGSNNVLKIDTA  239 (381)
T ss_pred             EEEEeccCCCceEEEEeCC
Confidence            76665543   44444443

>TIGR01174 ftsA cell division protein FtsA

Probab=95.85  E-value=0.015  Score=53.37  Aligned_cols=91  Identities=13%  Similarity=0.047  Sum_probs=71.6

Q ss_pred             HHHHHhhhhhhcccc------ceeeEEEecccCCcccccccChHHHHHHHHHHhhhhhhhhH-hhhccccceeeEeeccc
Q psy4650         261 LRAAAETCMHVLSTL------QSSNVFVESLYDGLDFHHNVSRARFESLIGGLLTSFVQPCM-HVLSTLQSSNVFVESLY  333 (381)
Q Consensus       261 l~~~~e~ak~~lS~~------~~~~i~~~~l~~g~~~~~~itr~~fe~l~~~l~~~~~~~~~-~~Ls~~~~~~~~~~~~~  333 (381)
                      ...++|+.|..++..      .+..+.++..  +......++|++|++++.++++++.+.++ +.|....   .. +.+.
T Consensus       242 ~~~~AE~lK~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~is~~~l~~ii~~~~~ei~~~i~~~~L~~~~---~~-~~i~  315 (371)
T TIGR01174       242 PLEEAERIKIKYGCASIPLEGPDENIEIPSV--GERPPRSLSRKELAEIIEARAEEILEIVKQKELRKSG---FK-EELN  315 (371)
T ss_pred             CHHHHHHHHHHeeEecccCCCCCCEEEeccC--CCCCCeEEcHHHHHHHHHHHHHHHHHHHHHHHHHhcC---Cc-ccCC
Confidence            356788999888763      2455666654  34567899999999999999999999998 9997643   22 4555


Q ss_pred             c-CcceEEeecHHHHHHHHHHHHHH
Q psy4650         334 D-GLDFHHNVSRARFESLIGGLLTS  357 (381)
Q Consensus       334 ~-~~~~~~~~~~~~~e~~~~~~~~~  357 (381)
                      . .++.||+...|.+++++++.|+.
T Consensus       316 ~gIvLtGG~S~ipgi~~~l~~~~~~  340 (371)
T TIGR01174       316 GGIVLTGGGAQLEGIVELAEKVFDN  340 (371)
T ss_pred             CEEEEeChHHcccCHHHHHHHHhCC
Confidence            5 67789999999999999999984

This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.

>PRK13927 rod shape-determining protein MreB; Provisional

Probab=95.85  E-value=0.018  Score=51.97  Aligned_cols=90  Identities=12%  Similarity=0.049  Sum_probs=66.8

Q ss_pred             HHhhhhhhccccce----eeEEE--ecccCCcccccccChHHHHHHHHHHhhhhhhhhHhhhccccceeeEe-ecc-c-c
Q psy4650         264 AAETCMHVLSTLQS----SNVFV--ESLYDGLDFHHNVSRARFESLIGGLLTSFVQPCMHVLSTLQSSNVFV-ESL-Y-D  334 (381)
Q Consensus       264 ~~e~ak~~lS~~~~----~~i~~--~~l~~g~~~~~~itr~~fe~l~~~l~~~~~~~~~~~Ls~~~~~~~~~-~~~-~-~  334 (381)
                      .+|+.|+.++....    ..+.+  +.+..|.+....++|++|++++.+++.++.+.++++|....   .++ .++ . +
T Consensus       203 ~ae~iK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~e~i~~~~~~i~~~i~~~l~~~~---~~~~~~~~~~~  279 (334)
T PRK13927        203 TAERIKIEIGSAYPGDEVLEMEVRGRDLVTGLPKTITISSNEIREALQEPLSAIVEAVKVALEQTP---PELAADIVDRG  279 (334)
T ss_pred             HHHHHHHHhhccCCCCCCceEEEeCcccCCCCCeEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCC---chhhhhhhcCC
Confidence            56778877765322    22333  23445666788999999999999999999999999997643   222 233 2 3


Q ss_pred             CcceEEeecHHHHHHHHHHHHH
Q psy4650         335 GLDFHHNVSRARFESLIGGLLT  356 (381)
Q Consensus       335 ~~~~~~~~~~~~~e~~~~~~~~  356 (381)
                      .++.||+.+.|-|++++++.|+
T Consensus       280 IvL~GG~s~ipgl~~~l~~~~~  301 (334)
T PRK13927        280 IVLTGGGALLRGLDKLLSEETG  301 (334)
T ss_pred             EEEECchhhhhHHHHHHHHHHC
Confidence            7788999999999999999986

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=95.72  E-value=0.87  Score=43.49  Aligned_cols=152  Identities=13%  Similarity=0.163  Sum_probs=85.9

Q ss_pred             eEEEEEecCCeEEEecCCCccceeeEeeccccc-----cEE-EEEeeeCCCccEEEEEc---------CCCeEEEEECCC
Q psy4650          47 EYKISYQESSRVKAFNPIQVATLILKTLYGHEK-----GVN-CVDYYHGGDKPYLISGA---------DDRLVKIWDYQN  111 (381)
Q Consensus        47 ~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~-----~v~-~~~~~~~~~~~~l~s~~---------~d~~v~vwd~~~  111 (381)
                      ..++.+..++.+.-+|..+.  ..+-.......     .+. +..+. + .  .++.++         .++.+..+|..+
T Consensus       111 ~~V~v~~~~g~v~AlD~~TG--~~~W~~~~~~~~~~~~~i~ssP~v~-~-~--~v~vg~~~~~~~~~~~~g~v~alD~~T  184 (488)
T cd00216         111 RKVFFGTFDGRLVALDAETG--KQVWKFGNNDQVPPGYTMTGAPTIV-K-K--LVIIGSSGAEFFACGVRGALRAYDVET  184 (488)
T ss_pred             CeEEEecCCCeEEEEECCCC--CEeeeecCCCCcCcceEecCCCEEE-C-C--EEEEeccccccccCCCCcEEEEEECCC
Confidence            35666677888888887642  33333221111     011 11221 1 2  344433         468899999999


Q ss_pred             CeEEEEeccCCC--------------------CE-EEEEEecCCCEEEEEeCCC------------------CEEEEeCC
Q psy4650         112 KTCVQTLEGHGQ--------------------NI-SAVCFHPELPIVITGSEDG------------------SVRVWHSG  152 (381)
Q Consensus       112 ~~~~~~~~~~~~--------------------~v-~~~~~~p~~~~l~s~~~d~------------------~i~vwd~~  152 (381)
                      |+.+..+.....                    .+ ...++.+.+..++.++.++                  .+.-+|..
T Consensus       185 G~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~  264 (488)
T cd00216         185 GKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDAD  264 (488)
T ss_pred             CceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCC
Confidence            998877653211                    01 1234455556666665554                  68889999


Q ss_pred             CCeeeEEEecCCcceEE------EEEc----CCCC---EEEEEeCCCeEEEEecCCCceEEEecCCCEEEEEecC
Q psy4650         153 THRLEISLTYGLERVWT------ISSL----KGSN---NVAIGYDEGSVLLKVGREEPAVSMDVNGCKIIWARHS  214 (381)
Q Consensus       153 ~~~~~~~~~~~~~~v~~------v~~~----~~~~---~l~~~~~dg~v~i~~~~~~~~~~~d~~~~~~~~~~~~  214 (381)
                      +|+.+............      ....    -++.   .++.++.+|.+..          +|..+|.++|....
T Consensus       265 tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~a----------ld~~tG~~~W~~~~  329 (488)
T cd00216         265 TGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYV----------LDRTTGKLISARPE  329 (488)
T ss_pred             CCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEE----------EECCCCcEeeEeEe
Confidence            99998887532211110      0110    1222   4556666666665          99999999998643

The alignment model contains an 8-bladed beta-propeller.

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=95.62  E-value=0.89  Score=43.42  Aligned_cols=162  Identities=18%  Similarity=0.104  Sum_probs=88.7

Q ss_pred             EEEEEecCCeEEEecCCCccceeeEeeccccc------cEE--EEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEEEec
Q psy4650          48 YKISYQESSRVKAFNPIQVATLILKTLYGHEK------GVN--CVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE  119 (381)
Q Consensus        48 ~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~------~v~--~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~  119 (381)
                      .++.++.++.+.-+|..+.  ..+....-...      .+.  .+... ++.  .++.++.++.|..+|..+|+.+..+.
T Consensus        63 ~vy~~~~~g~l~AlD~~tG--~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~--~V~v~~~~g~v~AlD~~TG~~~W~~~  137 (488)
T cd00216          63 DMYFTTSHSALFALDAATG--KVLWRYDPKLPADRGCCDVVNRGVAYW-DPR--KVFFGTFDGRLVALDAETGKQVWKFG  137 (488)
T ss_pred             EEEEeCCCCcEEEEECCCC--hhhceeCCCCCccccccccccCCcEEc-cCC--eEEEecCCCeEEEEECCCCCEeeeec
Confidence            4556667788888887542  22232221111      111  11111 112  57788889999999999999887775


Q ss_pred             cCCCC--EEEEEEec--CCCEEEEEe---------CCCCEEEEeCCCCeeeEEEecCCcc--------------------
Q psy4650         120 GHGQN--ISAVCFHP--ELPIVITGS---------EDGSVRVWHSGTHRLEISLTYGLER--------------------  166 (381)
Q Consensus       120 ~~~~~--v~~~~~~p--~~~~l~s~~---------~d~~i~vwd~~~~~~~~~~~~~~~~--------------------  166 (381)
                      .....  -..+.-+|  .+..++.++         .++.+.-+|..+|+.+.........                    
T Consensus       138 ~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~  217 (488)
T cd00216         138 NNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGT  217 (488)
T ss_pred             CCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCC
Confidence            43210  00111111  123344443         3678999999999998887642111                    


Q ss_pred             e-EEEEEcCCCCEEEEEeCCCeEEEEe--------cCCCceEEEecCCCEEEEEecC
Q psy4650         167 V-WTISSLKGSNNVAIGYDEGSVLLKV--------GREEPAVSMDVNGCKIIWARHS  214 (381)
Q Consensus       167 v-~~v~~~~~~~~l~~~~~dg~v~i~~--------~~~~~~~~~d~~~~~~~~~~~~  214 (381)
                      + .+..+.+.+..+..++.++..--|.        .....++.+|..+|+..|....
T Consensus       218 vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~  274 (488)
T cd00216         218 SWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQT  274 (488)
T ss_pred             ccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeC
Confidence            0 0223334445556665554210000        0123567799999999999754

The alignment model contains an 8-bladed beta-propeller.

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=95.34  E-value=1.3  Score=39.69  Aligned_cols=130  Identities=14%  Similarity=0.157  Sum_probs=79.2

Q ss_pred             CeEEEecCCCc----cceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCe-EEEEecc-CCCCEEEEE
Q psy4650          56 SRVKAFNPIQV----ATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKT-CVQTLEG-HGQNISAVC  129 (381)
Q Consensus        56 ~~v~i~~~~~~----~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~-~~~~~~~-~~~~v~~~~  129 (381)
                      |.+.+|++.+.    ....+..-....++|+++.-.  +.  .++.+. .+.|.+|++.... ....-.- ....+.++.
T Consensus        62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~--~~--~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~  136 (321)
T PF03178_consen   62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF--NG--RLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLS  136 (321)
T ss_dssp             EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE--TT--EEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEE
T ss_pred             cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh--CC--EEEEee-cCEEEEEEccCcccchhhheecceEEEEEEe
Confidence            88999998753    111112223457889999866  23  343333 4889999988776 3322221 222455555


Q ss_pred             EecCCCEEEEEeCCCCEEEEeCCC-CeeeEEE--ecCCcceEEEEEcCCCCEEEEEeCCCeEEEEe
Q psy4650         130 FHPELPIVITGSEDGSVRVWHSGT-HRLEISL--TYGLERVWTISSLKGSNNVAIGYDEGSVLLKV  192 (381)
Q Consensus       130 ~~p~~~~l~s~~~d~~i~vwd~~~-~~~~~~~--~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~  192 (381)
                      .  .+.+++.|...+.+.++.+.. +..+..+  ......++++.+.+++..++++..+|.+.+..
T Consensus       137 ~--~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~  200 (321)
T PF03178_consen  137 V--FKNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLR  200 (321)
T ss_dssp             E--ETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEE
T ss_pred             c--cccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEE
Confidence            4  466888898878888774432 2222222  23455688888986667999999999998854

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PRK02888 nitrous-oxide reductase; Validated

Probab=95.26  E-value=0.22  Score=47.79  Aligned_cols=142  Identities=12%  Similarity=0.005  Sum_probs=80.9

Q ss_pred             CCCeEEEEECCCCeEEEEeccCCCCEEEEEEecCCCEEEEEe--------------------------------------
Q psy4650         100 DDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPIVITGS--------------------------------------  141 (381)
Q Consensus       100 ~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~--------------------------------------  141 (381)
                      ..+.+.+.|..+.+....+.-.. ....++++|+|.++.+.+                                      
T Consensus       213 y~~~vSvID~etmeV~~qV~Vdg-npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~~  291 (635)
T PRK02888        213 YRSLFTAVDAETMEVAWQVMVDG-NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKFK  291 (635)
T ss_pred             eeEEEEEEECccceEEEEEEeCC-CcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCCEE
Confidence            34556666766655555443222 224556666666555443                                      


Q ss_pred             --CCCCEEEEeCCC----C-eeeEEEecCCcceEEEEEcCCCCEEEEEe-CCCeEEEEecCCCceEEEecCCCEEEEEec
Q psy4650         142 --EDGSVRVWHSGT----H-RLEISLTYGLERVWTISSLKGSNNVAIGY-DEGSVLLKVGREEPAVSMDVNGCKIIWARH  213 (381)
Q Consensus       142 --~d~~i~vwd~~~----~-~~~~~~~~~~~~v~~v~~~~~~~~l~~~~-~dg~v~i~~~~~~~~~~~d~~~~~~~~~~~  213 (381)
                        .++.|.+.|..+    + .....+. -......+.++|+|+++.+++ .++++.+          +|..+.+..+.-.
T Consensus       292 ~V~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSV----------IDv~k~k~~~~~~  360 (635)
T PRK02888        292 TIGGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTV----------IDVRKLDDLFDGK  360 (635)
T ss_pred             EECCCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEE----------EEChhhhhhhhcc
Confidence              235678888777    3 3344343 334567899999999876665 4778887          6665433211100


Q ss_pred             C-----ceeecccccCCccccccCCceEEeeehHHHHHhccCCCc
Q psy4650         214 S-----EVQQANLKTMPEVFENITAGVVLTLSVHVTIKYRLDISD  253 (381)
Q Consensus       214 ~-----~~~~~~~~~~~~~~~~~~dg~~l~~~~~d~~~~~~d~~~  253 (381)
                      -     -.....+.-.+...+|.++|....+.+-|...-.|++..
T Consensus       361 ~~~~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        361 IKPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             CCccceEEEeeccCCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence            0     001112222222257788888888888887788888753

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=94.97  E-value=3  Score=38.44  Aligned_cols=187  Identities=16%  Similarity=0.131  Sum_probs=112.8

Q ss_pred             ceeeeecCCCceEEEEEecCCeEEEecCCCccceeeEee-ccccccEEEEEeeeCCCccEEEEEc-CCCeEEEEECCCCe
Q psy4650          36 KVDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTL-YGHEKGVNCVDYYHGGDKPYLISGA-DDRLVKIWDYQNKT  113 (381)
Q Consensus        36 ~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l-~~h~~~v~~~~~~~~~~~~~l~s~~-~d~~v~vwd~~~~~  113 (381)
                      +.-+...+.+....+....++.|.+.|...  ....+.. .|.  .-..++++|++..-+++-+. .++++.+.|..++.
T Consensus        76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~--~~~~~~~~vG~--~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~  151 (381)
T COG3391          76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTAT--NTVLGSIPVGL--GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNK  151 (381)
T ss_pred             ccceeeCCCCCeEEEecCCCCeEEEEcCcc--cceeeEeeecc--CCceEEECCCCCEEEEEecccCCceEEEEeCCCCe
Confidence            334445555565666666678899998542  2223322 222  56788899988753443333 47999999999988


Q ss_pred             EEEEeccCCCCEEEEEEecCCCEEEEE-eCCCCEEEEeCCCCeeeE-E---EecCCcceEEEEEcCCCCEEEEEeCC---
Q psy4650         114 CVQTLEGHGQNISAVCFHPELPIVITG-SEDGSVRVWHSGTHRLEI-S---LTYGLERVWTISSLKGSNNVAIGYDE---  185 (381)
Q Consensus       114 ~~~~~~~~~~~v~~~~~~p~~~~l~s~-~~d~~i~vwd~~~~~~~~-~---~~~~~~~v~~v~~~~~~~~l~~~~~d---  185 (381)
                      .......-..+ ..+++.|+|..+... ..++.+.+.|..+..... .   ..........+.+.|+|..+......   
T Consensus       152 ~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~  230 (381)
T COG3391         152 VTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGS  230 (381)
T ss_pred             EEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCC
Confidence            77775543345 899999999955554 468899999976655442 1   01122334567888888855444332   


Q ss_pred             CeEEEEecCCCceEEEecCCCEEEEEecCceeecccccCCccccccCCceEEeeehH
Q psy4650         186 GSVLLKVGREEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSVH  242 (381)
Q Consensus       186 g~v~i~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~  242 (381)
                      +.+..          .|..++...+.......   .  ........|+|........
T Consensus       231 ~~v~~----------id~~~~~v~~~~~~~~~---~--~~~~v~~~p~g~~~yv~~~  272 (381)
T COG3391         231 NNVLK----------IDTATGNVTATDLPVGS---G--APRGVAVDPAGKAAYVANS  272 (381)
T ss_pred             ceEEE----------EeCCCceEEEecccccc---C--CCCceeECCCCCEEEEEec
Confidence            35554          77766665554111110   0  1111345678887776643

>PRK13930 rod shape-determining protein MreB; Provisional

Probab=94.79  E-value=0.045  Score=49.39  Aligned_cols=93  Identities=13%  Similarity=0.086  Sum_probs=66.0

Q ss_pred             HHHhhhhhhccccce----eeEEEe--cccCCcccccccChHHHHHHHHHHhhhhhhhhHhhhccccceeeEeecccc-C
Q psy4650         263 AAAETCMHVLSTLQS----SNVFVE--SLYDGLDFHHNVSRARFESLIGGLLTSFVQPCMHVLSTLQSSNVFVESLYD-G  335 (381)
Q Consensus       263 ~~~e~ak~~lS~~~~----~~i~~~--~l~~g~~~~~~itr~~fe~l~~~l~~~~~~~~~~~Ls~~~~~~~~~~~~~~-~  335 (381)
                      ..+|++|+.++....    ..+.+.  ....|......++|++|++++.+.+.++.+.++++|..... .+.-+.+.. .
T Consensus       206 ~~ae~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~e~i~~~~~~i~~~i~~~l~~~~~-~~~~~~~~~~I  284 (335)
T PRK13930        206 RTAEEIKIEIGSAYPLDEEESMEVRGRDLVTGLPKTIEISSEEVREALAEPLQQIVEAVKSVLEKTPP-ELAADIIDRGI  284 (335)
T ss_pred             HHHHHHHHHhhcCcCCCCCceEEEECccCCCCCCeeEEECHHHHHHHHHHHHHHHHHHHHHHHHhCCH-HHhhHHHhCCE
Confidence            457888888765432    122322  23345556778999999999999999999999999886421 111122333 6


Q ss_pred             cceEEeecHHHHHHHHHHHHH
Q psy4650         336 LDFHHNVSRARFESLIGGLLT  356 (381)
Q Consensus       336 ~~~~~~~~~~~~e~~~~~~~~  356 (381)
                      ++.||+...|.|++.+++.|+
T Consensus       285 vL~GG~s~ipg~~~~l~~~~~  305 (335)
T PRK13930        285 VLTGGGALLRGLDKLLSEETG  305 (335)
T ss_pred             EEECchhcchhHHHHHHHHHC
Confidence            778999999999999999987

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=94.56  E-value=1.5  Score=39.18  Aligned_cols=129  Identities=15%  Similarity=0.219  Sum_probs=72.3

Q ss_pred             eEEEecCCCccceeeEeeccccccEEEEEeee-CC----CccEEEEEcC----------CCeEEEEECCCC----eEEEE
Q psy4650          57 RVKAFNPIQVATLILKTLYGHEKGVNCVDYYH-GG----DKPYLISGAD----------DRLVKIWDYQNK----TCVQT  117 (381)
Q Consensus        57 ~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~-~~----~~~~l~s~~~----------d~~v~vwd~~~~----~~~~~  117 (381)
                      .|++.|+.+....-...+.. ...+.++.... .+    ...+++.|..          .|.+.++++...    ..+..
T Consensus         3 ~i~l~d~~~~~~~~~~~l~~-~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~   81 (321)
T PF03178_consen    3 SIRLVDPTTFEVLDSFELEP-NEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL   81 (321)
T ss_dssp             EEEEEETTTSSEEEEEEEET-TEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred             EEEEEeCCCCeEEEEEECCC-CceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence            57788876433333333443 34455544322 21    2457765533          288999999884    12222


Q ss_pred             e--ccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCe-eeEEEec-CCcceEEEEEcCCCCEEEEEeCCCeEEEE
Q psy4650         118 L--EGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHR-LEISLTY-GLERVWTISSLKGSNNVAIGYDEGSVLLK  191 (381)
Q Consensus       118 ~--~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~-~~~~~~~-~~~~v~~v~~~~~~~~l~~~~~dg~v~i~  191 (381)
                      +  ....++|.+++-- .+. ++.+. ++.|.+|++...+ ....-.. ....+.++...  +.++++|.....+.+.
T Consensus        82 i~~~~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~  154 (321)
T PF03178_consen   82 IHSTEVKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLL  154 (321)
T ss_dssp             EEEEEESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEE
T ss_pred             EEEEeecCcceEhhhh-CCE-EEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEE
Confidence            2  2346788888765 344 44443 4789999998777 4332222 22355555554  5588888877777663

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=94.27  E-value=4.6  Score=37.58  Aligned_cols=47  Identities=11%  Similarity=0.221  Sum_probs=34.0

Q ss_pred             eEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEEC
Q psy4650          57 RVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDY  109 (381)
Q Consensus        57 ~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~  109 (381)
                      .|.+|+..   +..+.++.=-.+.+.++.|+.+.   .|+.-..||+++++|.
T Consensus        62 ~I~iys~s---G~ll~~i~w~~~~iv~~~wt~~e---~LvvV~~dG~v~vy~~  108 (410)
T PF04841_consen   62 SIQIYSSS---GKLLSSIPWDSGRIVGMGWTDDE---ELVVVQSDGTVRVYDL  108 (410)
T ss_pred             EEEEECCC---CCEeEEEEECCCCEEEEEECCCC---eEEEEEcCCEEEEEeC
Confidence            58888874   34445433223899999998743   4777789999999987

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=94.17  E-value=2.4  Score=37.60  Aligned_cols=112  Identities=8%  Similarity=0.061  Sum_probs=70.5

Q ss_pred             eEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCC--C----eE-EEEeccCCCCEEEEE
Q psy4650          57 RVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQN--K----TC-VQTLEGHGQNISAVC  129 (381)
Q Consensus        57 ~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~--~----~~-~~~~~~~~~~v~~~~  129 (381)
                      .++.+++.   ....+.+.+|-..-++++|||++.. ++++=+..+.+.-|++..  +    .. ...+....+..-.++
T Consensus       144 ~lyr~~p~---g~~~~l~~~~~~~~NGla~SpDg~t-ly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~  219 (307)
T COG3386         144 SLYRVDPD---GGVVRLLDDDLTIPNGLAFSPDGKT-LYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMA  219 (307)
T ss_pred             eEEEEcCC---CCEEEeecCcEEecCceEECCCCCE-EEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceE
Confidence            45555542   2334444555556678999999873 555656668888777652  1    11 122222334445566


Q ss_pred             EecCCCEEEEEeCCC-CEEEEeCCCCeeeEEEecCCcceEEEEEc
Q psy4650         130 FHPELPIVITGSEDG-SVRVWHSGTHRLEISLTYGLERVWTISSL  173 (381)
Q Consensus       130 ~~p~~~~l~s~~~d~-~i~vwd~~~~~~~~~~~~~~~~v~~v~~~  173 (381)
                      ..-+|.+.+++..+| .|..|+.. |+.+..+......+++++|-
T Consensus       220 vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~Fg  263 (307)
T COG3386         220 VDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFG  263 (307)
T ss_pred             EeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceEe
Confidence            667777776555554 89999988 88888887766777777775

>KOG4499|consensus

Probab=94.15  E-value=2.4  Score=35.31  Aligned_cols=92  Identities=9%  Similarity=0.084  Sum_probs=65.2

Q ss_pred             EEEEeeeCCCccEEEEEcCCCeEEEEE--CCCCe-----EEEEecc-----CCCCEEEEEEecCCCEEEEEeCCCCEEEE
Q psy4650          82 NCVDYYHGGDKPYLISGADDRLVKIWD--YQNKT-----CVQTLEG-----HGQNISAVCFHPELPIVITGSEDGSVRVW  149 (381)
Q Consensus        82 ~~~~~~~~~~~~~l~s~~~d~~v~vwd--~~~~~-----~~~~~~~-----~~~~v~~~~~~p~~~~l~s~~~d~~i~vw  149 (381)
                      +.++|+.+.. .+...-+.+.+|.-||  ..+|.     .+..++.     |.. --.++..-+|.+.+++-..++|...
T Consensus       161 Ngl~Wd~d~K-~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~-PDGm~ID~eG~L~Va~~ng~~V~~~  238 (310)
T KOG4499|consen  161 NGLAWDSDAK-KFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLE-PDGMTIDTEGNLYVATFNGGTVQKV  238 (310)
T ss_pred             ccccccccCc-EEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCC-CCcceEccCCcEEEEEecCcEEEEE
Confidence            5678886554 3667778899998888  55552     2333321     111 1233445577788888888999999


Q ss_pred             eCCCCeeeEEEecCCcceEEEEEcCC
Q psy4650         150 HSGTHRLEISLTYGLERVWTISSLKG  175 (381)
Q Consensus       150 d~~~~~~~~~~~~~~~~v~~v~~~~~  175 (381)
                      |..+|+.+..+......++++||-..
T Consensus       239 dp~tGK~L~eiklPt~qitsccFgGk  264 (310)
T KOG4499|consen  239 DPTTGKILLEIKLPTPQITSCCFGGK  264 (310)
T ss_pred             CCCCCcEEEEEEcCCCceEEEEecCC
Confidence            99999999999988999999999743

>PRK13928 rod shape-determining protein Mbl; Provisional

Probab=94.11  E-value=0.17  Score=45.61  Aligned_cols=70  Identities=17%  Similarity=0.242  Sum_probs=49.3

Q ss_pred             hhhhhHhhhcccc----ceeeEee--ccccCcceEEeecHHHHHHHHHHHHHHhHHHHHHHHHhCC--CCccccc-ccc
Q psy4650         311 FVQPCMHVLSTLQ----SSNVFVE--SLYDGLDFHHNVSRARFESLIGGLLTSFVQPIEDVLSRSN--ITHDQIN-KFT  380 (381)
Q Consensus       311 ~~~~~~~~Ls~~~----~~~~~~~--~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~l~~~~--~~~~~i~-~v~  380 (381)
                      .++.+|+.+....    ...+.+.  ++..+...+..+++++|++++.+++.++.++++++|++++  +..+.++ .|+
T Consensus       202 ~ae~lK~~~~~~~~~~~~~~~~v~g~~~~~~~~~~~~i~~~~~~eii~~~~~~i~~~i~~~l~~~~~~~~~~~i~~~Iv  280 (336)
T PRK13928        202 TAEEIKIKIGTAFPGAREEEMEIRGRDLVTGLPKTITVTSEEIREALKEPVSAIVQAVKSVLERTPPELSADIIDRGII  280 (336)
T ss_pred             HHHHHHHHhcccccccCCcEEEEecccccCCCceEEEECHHHHHHHHHHHHHHHHHHHHHHHHhCCccccHhhcCCCEE
Confidence            4556666655431    1222222  2334456778999999999999999999999999999997  5667777 454

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=94.06  E-value=3.4  Score=35.33  Aligned_cols=150  Identities=13%  Similarity=0.126  Sum_probs=85.1

Q ss_pred             ceeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeeccc-cccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCe-
Q psy4650          36 KVDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGH-EKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKT-  113 (381)
Q Consensus        36 ~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h-~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~-  113 (381)
                      ...++..++...+.+.....+.|..++..   ..+++.+.-. .+...++.+.-++  .++++.-.++.+.++++.... 
T Consensus        24 ~SGLTy~pd~~tLfaV~d~~~~i~els~~---G~vlr~i~l~g~~D~EgI~y~g~~--~~vl~~Er~~~L~~~~~~~~~~   98 (248)
T PF06977_consen   24 LSGLTYNPDTGTLFAVQDEPGEIYELSLD---GKVLRRIPLDGFGDYEGITYLGNG--RYVLSEERDQRLYIFTIDDDTT   98 (248)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETT-----EEEEEE-SS-SSEEEEEE-STT--EEEEEETTTTEEEEEEE----T
T ss_pred             ccccEEcCCCCeEEEEECCCCEEEEEcCC---CCEEEEEeCCCCCCceeEEEECCC--EEEEEEcCCCcEEEEEEecccc
Confidence            56788888777777777778888777763   3455554322 3567888886443  366666678999888873321 


Q ss_pred             -----EEEEe-----ccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCC---CeeeEEE--------ecCCcceEEEEE
Q psy4650         114 -----CVQTL-----EGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGT---HRLEISL--------TYGLERVWTISS  172 (381)
Q Consensus       114 -----~~~~~-----~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~---~~~~~~~--------~~~~~~v~~v~~  172 (381)
                           ....+     ..+..++-.++|+|.+..|..+-......++.+..   +..+...        ......+.++++
T Consensus        99 ~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~  178 (248)
T PF06977_consen   99 SLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSY  178 (248)
T ss_dssp             T--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEE
T ss_pred             ccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEE
Confidence                 11122     12445689999999888777777776777776653   2211111        112345788999


Q ss_pred             cCCCC-EEEEEeCCCeEEE
Q psy4650         173 LKGSN-NVAIGYDEGSVLL  190 (381)
Q Consensus       173 ~~~~~-~l~~~~~dg~v~i  190 (381)
                      +|... +++.......+..
T Consensus       179 ~p~t~~lliLS~es~~l~~  197 (248)
T PF06977_consen  179 DPRTGHLLILSDESRLLLE  197 (248)
T ss_dssp             ETTTTEEEEEETTTTEEEE
T ss_pred             cCCCCeEEEEECCCCeEEE
Confidence            99754 5555555566655

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>KOG2444|consensus

Probab=94.05  E-value=0.19  Score=41.40  Aligned_cols=102  Identities=10%  Similarity=0.108  Sum_probs=58.5

Q ss_pred             EEEEEcCCCeEEEEECCCCeEEEEecc-CCCCEEE-EEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEecCCcceEEEE
Q psy4650          94 YLISGADDRLVKIWDYQNKTCVQTLEG-HGQNISA-VCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTIS  171 (381)
Q Consensus        94 ~l~s~~~d~~v~vwd~~~~~~~~~~~~-~~~~v~~-~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~  171 (381)
                      .++.|+.+|.|.+|............. -...+.+ +.--.++.+..+++.|+.++-|+...++.+.....|..      
T Consensus        72 ~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~------  145 (238)
T KOG2444|consen   72 KLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNF------  145 (238)
T ss_pred             eEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccC------
Confidence            588999999999998752211111111 1112222 22223444777888999999999987776665554542      


Q ss_pred             EcCCCCEEEEEeCCCeEEEEe-cCCCceEEEec
Q psy4650         172 SLKGSNNVAIGYDEGSVLLKV-GREEPAVSMDV  203 (381)
Q Consensus       172 ~~~~~~~l~~~~~dg~v~i~~-~~~~~~~~~d~  203 (381)
                        ..+..+++.+.++.+.+|. +.+..+..|+.
T Consensus       146 --~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~v  176 (238)
T KOG2444|consen  146 --ESGEELIVVGSDEFLKIADTSHDRVLKKWNV  176 (238)
T ss_pred             --CCcceeEEecCCceEEeeccccchhhhhcch
Confidence              2344555566677777753 22333333444

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.97  E-value=3.7  Score=35.37  Aligned_cols=125  Identities=14%  Similarity=0.144  Sum_probs=79.9

Q ss_pred             EeeeCCCccEEEEEcC-----CCeEEEEECCCC-eEEEEeccCCCCEEEEEEecCCCEEEEEeC----------------
Q psy4650          85 DYYHGGDKPYLISGAD-----DRLVKIWDYQNK-TCVQTLEGHGQNISAVCFHPELPIVITGSE----------------  142 (381)
Q Consensus        85 ~~~~~~~~~~l~s~~~-----d~~v~vwd~~~~-~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~----------------  142 (381)
                      .|||+|.  +|...-+     -|.|-|||...+ ..+.++..|.-.-+.+.|.+||+.++.+..                
T Consensus       120 vfs~dG~--~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNld  197 (366)
T COG3490         120 VFSPDGR--LLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLD  197 (366)
T ss_pred             ccCCCCc--EEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchh
Confidence            4788877  5544322     467889998865 356778888877799999999998776532                


Q ss_pred             --CCCEEEEeCCCCeeeEE--Ee--cCCcceEEEEEcCCCCEEEEE----------------------------------
Q psy4650         143 --DGSVRVWHSGTHRLEIS--LT--YGLERVWTISSLKGSNNVAIG----------------------------------  182 (381)
Q Consensus       143 --d~~i~vwd~~~~~~~~~--~~--~~~~~v~~v~~~~~~~~l~~~----------------------------------  182 (381)
                        .-.+.+.|..+|..+..  +.  .+...+..+...++|+....+                                  
T Consensus       198 sMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~  277 (366)
T COG3490         198 SMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAA  277 (366)
T ss_pred             hcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHH
Confidence              12344455555554432  22  233456666666666554333                                  


Q ss_pred             -----------eCCCeEEEEecCCCceEEEecCCCEEEEE
Q psy4650         183 -----------YDEGSVLLKVGREEPAVSMDVNGCKIIWA  211 (381)
Q Consensus       183 -----------~~dg~v~i~~~~~~~~~~~d~~~~~~~~~  211 (381)
                                 -.+|.|-+.....+..+.||..+|..+-.
T Consensus       278 ~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~  317 (366)
T COG3490         278 FANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSE  317 (366)
T ss_pred             HHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEec
Confidence                       23455555566778888999999887654

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=93.94  E-value=2.4  Score=39.06  Aligned_cols=73  Identities=19%  Similarity=0.171  Sum_probs=49.3

Q ss_pred             eccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEec--------CCcceEEEEEcC-----CC---CEEEE
Q psy4650         118 LEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTY--------GLERVWTISSLK-----GS---NNVAI  181 (381)
Q Consensus       118 ~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~--------~~~~v~~v~~~~-----~~---~~l~~  181 (381)
                      +....++|++++.+ +-.++|.|..+|.+.|.|+++...+..-.-        ....++++.|..     ++   -.+.+
T Consensus        82 ~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~v  160 (395)
T PF08596_consen   82 LDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLV  160 (395)
T ss_dssp             E---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEE
T ss_pred             eeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEE
Confidence            34456889999986 556999999999999999998887766321        233577777762     22   36788


Q ss_pred             EeCCCeEEEE
Q psy4650         182 GYDEGSVLLK  191 (381)
Q Consensus       182 ~~~dg~v~i~  191 (381)
                      |...|.+.++
T Consensus       161 GTn~G~v~~f  170 (395)
T PF08596_consen  161 GTNSGNVLTF  170 (395)
T ss_dssp             EETTSEEEEE
T ss_pred             EeCCCCEEEE
Confidence            8888888775

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=93.84  E-value=1.6  Score=40.75  Aligned_cols=100  Identities=17%  Similarity=0.110  Sum_probs=60.5

Q ss_pred             EEEEEeeeCCCccEEE-EEcCC----CeEEEEECCCCeEEEEe-ccCCCCEEEEEEecCCCEEEEEeCCC----------
Q psy4650          81 VNCVDYYHGGDKPYLI-SGADD----RLVKIWDYQNKTCVQTL-EGHGQNISAVCFHPELPIVITGSEDG----------  144 (381)
Q Consensus        81 v~~~~~~~~~~~~~l~-s~~~d----~~v~vwd~~~~~~~~~~-~~~~~~v~~~~~~p~~~~l~s~~~d~----------  144 (381)
                      +....++|++.  +++ +-+..    ..++++|+.+++.+... .... . ..+.|.+++..+.....+.          
T Consensus       126 ~~~~~~Spdg~--~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~-~-~~~~W~~d~~~~~y~~~~~~~~~~~~~~~  201 (414)
T PF02897_consen  126 LGGFSVSPDGK--RLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPK-F-SSVSWSDDGKGFFYTRFDEDQRTSDSGYP  201 (414)
T ss_dssp             EEEEEETTTSS--EEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEE-S-EEEEECTTSSEEEEEECSTTTSS-CCGCC
T ss_pred             eeeeeECCCCC--EEEEEecCCCCceEEEEEEECCCCcCcCCcccccc-c-ceEEEeCCCCEEEEEEeCcccccccCCCC
Confidence            33567888877  444 33333    45999999999765432 3221 1 3399999998766554332          


Q ss_pred             -CEEEEeCCCCeee--EEEecCCcc--eEEEEEcCCCCEEEEEeC
Q psy4650         145 -SVRVWHSGTHRLE--ISLTYGLER--VWTISSLKGSNNVAIGYD  184 (381)
Q Consensus       145 -~i~vwd~~~~~~~--~~~~~~~~~--v~~v~~~~~~~~l~~~~~  184 (381)
                       .|..|.+.++...  ..+......  ...+..++++++++..+.
T Consensus       202 ~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~  246 (414)
T PF02897_consen  202 RQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSS  246 (414)
T ss_dssp             EEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEE
T ss_pred             cEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEE
Confidence             3788888876543  333333222  567888899998766543

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>KOG2395|consensus

Probab=93.74  E-value=0.43  Score=44.24  Aligned_cols=99  Identities=13%  Similarity=0.219  Sum_probs=69.2

Q ss_pred             EEEecCCeEEEecCCCccceeeEeecccc----ccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEEEeccCCCCE
Q psy4650          50 ISYQESSRVKAFNPIQVATLILKTLYGHE----KGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNI  125 (381)
Q Consensus        50 ~s~~~d~~v~i~~~~~~~~~~~~~l~~h~----~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v  125 (381)
                      +.|-.+..|.-|||+-.....+.-.++|.    ....|.+-.-+|   +++.||.+|.||+||-........+.+-..+|
T Consensus       398 lvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~aTT~sG---~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I  474 (644)
T KOG2395|consen  398 LVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCFATTESG---YIVVGSLKGDIRLYDRIGRRAKTALPGLGDAI  474 (644)
T ss_pred             EEeecCCceEEecccccCcceeeeeeccccccccccceeeecCCc---eEEEeecCCcEEeehhhhhhhhhcccccCCce
Confidence            44566778999999743333444444543    335565554444   69999999999999974444555678888999


Q ss_pred             EEEEEecCCCEEEEEeCCCCEEEEeCC
Q psy4650         126 SAVCFHPELPIVITGSEDGSVRVWHSG  152 (381)
Q Consensus       126 ~~~~~~p~~~~l~s~~~d~~i~vwd~~  152 (381)
                      ..+..+.+|..++..+ +..+.+.|..
T Consensus       475 ~hVdvtadGKwil~Tc-~tyLlLi~t~  500 (644)
T KOG2395|consen  475 KHVDVTADGKWILATC-KTYLLLIDTL  500 (644)
T ss_pred             eeEEeeccCcEEEEec-ccEEEEEEEe
Confidence            9999999999766554 5567777654

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=93.61  E-value=6.8  Score=37.82  Aligned_cols=156  Identities=19%  Similarity=0.152  Sum_probs=86.9

Q ss_pred             EEEEEcCCCeEEEEECCCCeEEEEecc--CCCCEEEEEEec---CCCEEEEEe------CCCCEEEEeCCCCeeeEEEec
Q psy4650          94 YLISGADDRLVKIWDYQNKTCVQTLEG--HGQNISAVCFHP---ELPIVITGS------EDGSVRVWHSGTHRLEISLTY  162 (381)
Q Consensus        94 ~l~s~~~d~~v~vwd~~~~~~~~~~~~--~~~~v~~~~~~p---~~~~l~s~~------~d~~i~vwd~~~~~~~~~~~~  162 (381)
                      .++.++.|+.+...|..+|+.+.....  +... ..+.-+|   ++ .++.+.      .+|.|.-+|..+|+.+..+..
T Consensus       122 ~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~-~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~  199 (527)
T TIGR03075       122 KVFFGTLDARLVALDAKTGKVVWSKKNGDYKAG-YTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYT  199 (527)
T ss_pred             EEEEEcCCCEEEEEECCCCCEEeeccccccccc-ccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEeccC
Confidence            467788899999999999998776542  1110 0111112   33 344332      268899999999998887643


Q ss_pred             CCc-------------------------------ceE-EEEEcCCCCEEEEEeCCCeEEEEecC--------CCceEEEe
Q psy4650         163 GLE-------------------------------RVW-TISSLKGSNNVAIGYDEGSVLLKVGR--------EEPAVSMD  202 (381)
Q Consensus       163 ~~~-------------------------------~v~-~v~~~~~~~~l~~~~~dg~v~i~~~~--------~~~~~~~d  202 (381)
                      -..                               .++ ...+.|...++..+..+..-  |.+.        ...++..|
T Consensus       200 ~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p--~~~~~r~gdnl~~~s~vAld  277 (527)
T TIGR03075       200 VPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSP--WNSHLRPGDNLYTSSIVARD  277 (527)
T ss_pred             cCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCC--CCCCCCCCCCccceeEEEEc
Confidence            211                               111 23555555555555544322  3221        24788899


Q ss_pred             cCCCEEEEEecCceeecc-cc--cCCccccccCCce---EEeeehHHHHHhccCCCc
Q psy4650         203 VNGCKIIWARHSEVQQAN-LK--TMPEVFENITAGV---VLTLSVHVTIKYRLDISD  253 (381)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~dg~---~l~~~~~d~~~~~~d~~~  253 (381)
                      .++|+..|..+.-.+... ..  .....++...+|+   .++.+.+.+..+.+|-..
T Consensus       278 ~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~t  334 (527)
T TIGR03075       278 PDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTN  334 (527)
T ss_pred             cccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCC
Confidence            999999998765332221 11  1111122223554   555666666566655543

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PHA02713 hypothetical protein; Provisional

Probab=93.57  E-value=3.8  Score=39.89  Aligned_cols=20  Identities=5%  Similarity=0.227  Sum_probs=13.1

Q ss_pred             EEEEEcCCC-----eEEEEECCCCe
Q psy4650          94 YLISGADDR-----LVKIWDYQNKT  113 (381)
Q Consensus        94 ~l~s~~~d~-----~v~vwd~~~~~  113 (381)
                      ..+.||.++     ++..||..+..
T Consensus       354 IYviGG~~~~~~~~sve~Ydp~~~~  378 (557)
T PHA02713        354 IYAIGGQNGTNVERTIECYTMGDDK  378 (557)
T ss_pred             EEEECCcCCCCCCceEEEEECCCCe
Confidence            556666653     47788887653

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=93.56  E-value=4.6  Score=37.88  Aligned_cols=139  Identities=10%  Similarity=0.044  Sum_probs=68.7

Q ss_pred             eeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEEEeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCC
Q psy4650          73 TLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSG  152 (381)
Q Consensus        73 ~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~  152 (381)
                      .+....-....+.++|++.  +++. ..||.-.++.....+...  .   +......|.+.+ .+|.-...++|.++.--
T Consensus        27 ~lg~~~~~p~~ls~npngr--~v~V-~g~geY~iyt~~~~r~k~--~---G~g~~~vw~~~n-~yAv~~~~~~I~I~kn~   97 (443)
T PF04053_consen   27 ELGSCEIYPQSLSHNPNGR--FVLV-CGDGEYEIYTALAWRNKA--F---GSGLSFVWSSRN-RYAVLESSSTIKIYKNF   97 (443)
T ss_dssp             EEEE-SS--SEEEE-TTSS--EEEE-EETTEEEEEETTTTEEEE--E---EE-SEEEE-TSS-EEEEE-TTS-EEEEETT
T ss_pred             cCCCCCcCCeeEEECCCCC--EEEE-EcCCEEEEEEccCCcccc--c---CceeEEEEecCc-cEEEEECCCeEEEEEcC
Confidence            3334445678899999776  5555 557777777744333222  1   233678888844 56666668889996332


Q ss_pred             CCeeeEEEecCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCceEEEecCCCEEEEEecCceeecccccCCccccccC
Q psy4650         153 THRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKVGREEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENIT  232 (381)
Q Consensus       153 ~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (381)
                      .......+... ..+..+..   |..|+..+.+ .+.+          ||..++..+..+.-..    +    ..+-|++
T Consensus        98 ~~~~~k~i~~~-~~~~~If~---G~LL~~~~~~-~i~~----------yDw~~~~~i~~i~v~~----v----k~V~Ws~  154 (443)
T PF04053_consen   98 KNEVVKSIKLP-FSVEKIFG---GNLLGVKSSD-FICF----------YDWETGKLIRRIDVSA----V----KYVIWSD  154 (443)
T ss_dssp             EE-TT-----S-S-EEEEE----SSSEEEEETT-EEEE----------E-TTT--EEEEESS-E---------EEEEE-T
T ss_pred             ccccceEEcCC-cccceEEc---CcEEEEECCC-CEEE----------EEhhHcceeeEEecCC----C----cEEEEEC
Confidence            22222233221 12333333   7777666544 6777          8887787776654321    1    1145778


Q ss_pred             CceEEeeehHH
Q psy4650         233 AGVVLTLSVHV  243 (381)
Q Consensus       233 dg~~l~~~~~d  243 (381)
                      +|..++..+.+
T Consensus       155 ~g~~val~t~~  165 (443)
T PF04053_consen  155 DGELVALVTKD  165 (443)
T ss_dssp             TSSEEEEE-S-
T ss_pred             CCCEEEEEeCC
Confidence            88888888755

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=93.52  E-value=5  Score=35.43  Aligned_cols=111  Identities=13%  Similarity=0.192  Sum_probs=57.2

Q ss_pred             cccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEEEeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCC-CC
Q psy4650          76 GHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSG-TH  154 (381)
Q Consensus        76 ~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~-~~  154 (381)
                      +-.+.+..+.-++++.  +++.++.-....-||.-...-...-......|.++.|.|++.+.+.+ ..|.+++=+.. .+
T Consensus       142 ~~~gs~~~~~r~~dG~--~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~  218 (302)
T PF14870_consen  142 ETSGSINDITRSSDGR--YVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDG  218 (302)
T ss_dssp             S----EEEEEE-TTS---EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEE
T ss_pred             CCcceeEeEEECCCCc--EEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCc
Confidence            3446778887788776  67776665566677753221122222345789999999998876654 78888888722 22


Q ss_pred             eeeEE-E-e--cCCcceEEEEEcCCCCEEEEEeCCCeEEE
Q psy4650         155 RLEIS-L-T--YGLERVWTISSLKGSNNVAIGYDEGSVLL  190 (381)
Q Consensus       155 ~~~~~-~-~--~~~~~v~~v~~~~~~~~l~~~~~dg~v~i  190 (381)
                      ..... + .  .....+..++|.+++...++|+ .|.+..
T Consensus       219 ~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~l~~  257 (302)
T PF14870_consen  219 ETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGG-SGTLLV  257 (302)
T ss_dssp             EEE---B-TTSS--S-EEEEEESSSS-EEEEES-TT-EEE
T ss_pred             cccccccCCcccCceeeEEEEecCCCCEEEEeC-CccEEE
Confidence            11111 1 1  1223478999999877777555 555553

>PRK13616 lipoprotein LpqB; Provisional

Probab=93.46  E-value=1.3  Score=43.10  Aligned_cols=107  Identities=15%  Similarity=0.135  Sum_probs=61.9

Q ss_pred             cccccEEEEEeeeCCCccEEEEE-----cCCC--eEEEEECCCCeEEEEeccCCCCEEEEEEecCCCEEEEEeCC-----
Q psy4650          76 GHEKGVNCVDYYHGGDKPYLISG-----ADDR--LVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPIVITGSED-----  143 (381)
Q Consensus        76 ~h~~~v~~~~~~~~~~~~~l~s~-----~~d~--~v~vwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d-----  143 (381)
                      +....+.+.+++|+|+. ..+..     ..|+  .+.+++. .+.......+.  ....-.|+|+|..+++....     
T Consensus       347 g~~~~vsspaiSpdG~~-vA~v~~~~~~~~d~~s~Lwv~~~-gg~~~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~  422 (591)
T PRK13616        347 GQMGNITSAALSRSGRQ-VAAVVTLGRGAPDPASSLWVGPL-GGVAVQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVR  422 (591)
T ss_pred             ccccCcccceECCCCCE-EEEEEeecCCCCCcceEEEEEeC-CCcceeeecCC--CCCCceECCCCCceEEEecCcceEE
Confidence            33346788899999884 22222     1244  4444454 22222323333  36888999998866665432     


Q ss_pred             -------CCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCCCeEEE
Q psy4650         144 -------GSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLL  190 (381)
Q Consensus       144 -------~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i  190 (381)
                             +.+.+.++..+....   .....|..+.|+|+|..++... +|.+.+
T Consensus       423 v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~V  472 (591)
T PRK13616        423 VIRDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYL  472 (591)
T ss_pred             EeccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEE
Confidence                   222222443333222   2245699999999999888766 466665

>KOG1008|consensus

Probab=93.35  E-value=0.028  Score=52.82  Aligned_cols=151  Identities=13%  Similarity=0.159  Sum_probs=85.9

Q ss_pred             eeeeecCCCceEEEEEec----CCeEEEecCCCcccee--eEeecc-ccccEEEEEeeeCCCccEEEEEcCCCeEEEEEC
Q psy4650          37 VDITTNKDMIEYKISYQE----SSRVKAFNPIQVATLI--LKTLYG-HEKGVNCVDYYHGGDKPYLISGADDRLVKIWDY  109 (381)
Q Consensus        37 ~~i~~~~~~~~~~~s~~~----d~~v~i~~~~~~~~~~--~~~l~~-h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~  109 (381)
                      ..+...+-..+.|++|-+    |..+.|||....-..+  -..+.+ ......+++|-.+  ..++.+|...+.++++|+
T Consensus       106 t~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd--~klvlaGm~sr~~~ifdl  183 (783)
T KOG1008|consen  106 TSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRD--TKLVLAGMTSRSVHIFDL  183 (783)
T ss_pred             cccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccC--cchhhcccccchhhhhhh
Confidence            344444444556666533    5678999986431111  111222 3345557777643  337888888889999998


Q ss_pred             CCCeEEEEeccCCCCEEEEEEec-CCCEEEEEeCCCCEEEEe-CCCC-eeeEEEecC----CcceEEEEEcCCCC-EEEE
Q psy4650         110 QNKTCVQTLEGHGQNISAVCFHP-ELPIVITGSEDGSVRVWH-SGTH-RLEISLTYG----LERVWTISSLKGSN-NVAI  181 (381)
Q Consensus       110 ~~~~~~~~~~~~~~~v~~~~~~p-~~~~l~s~~~d~~i~vwd-~~~~-~~~~~~~~~----~~~v~~v~~~~~~~-~l~~  181 (381)
                      +...... -.-.+..+..+...| .+.++++-. |+.+.+|| .+.- .++..+...    ...+..++|.|..+ .+++
T Consensus       184 Rqs~~~~-~svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~  261 (783)
T KOG1008|consen  184 RQSLDSV-SSVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAV  261 (783)
T ss_pred             hhhhhhh-hhhhhhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhh
Confidence            7432111 111334566777788 566776655 99999999 4322 222222212    22488999999643 3344


Q ss_pred             Ee-CCCeEEEE
Q psy4650         182 GY-DEGSVLLK  191 (381)
Q Consensus       182 ~~-~dg~v~i~  191 (381)
                      .+ +.+++++.
T Consensus       262 l~RdS~tIrly  272 (783)
T KOG1008|consen  262 LSRDSITIRLY  272 (783)
T ss_pred             hccCcceEEEe
Confidence            33 44666663

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=93.10  E-value=2.5  Score=41.14  Aligned_cols=103  Identities=10%  Similarity=0.151  Sum_probs=67.9

Q ss_pred             ceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECC-----CC----eEEE
Q psy4650          46 IEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQ-----NK----TCVQ  116 (381)
Q Consensus        46 ~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~-----~~----~~~~  116 (381)
                      ..+.+.-+...++.|||.....-..-..+ ...+.|.++.|...++.+.+.+.|..+.|.++-..     ..    .++.
T Consensus        41 ~k~a~V~~~~~~LtIWD~~~~~lE~~~~f-~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~  119 (631)
T PF12234_consen   41 KKIAVVDSSRSELTIWDTRSGVLEYEESF-SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIR  119 (631)
T ss_pred             CcEEEEECCCCEEEEEEcCCcEEEEeeee-cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccceeE
Confidence            33444455566899999864221111222 45789999999877676789999999999988542     11    2233


Q ss_pred             E--eccCC-CCEEEEEEecCCCEEEEEeCCCCEEEEeC
Q psy4650         117 T--LEGHG-QNISAVCFHPELPIVITGSEDGSVRVWHS  151 (381)
Q Consensus       117 ~--~~~~~-~~v~~~~~~p~~~~l~s~~~d~~i~vwd~  151 (381)
                      .  +..|+ .+|....|.++|..++.+|  +.+.|+|-
T Consensus       120 ~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk  155 (631)
T PF12234_consen  120 KIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDK  155 (631)
T ss_pred             EEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECC
Confidence            3  34455 6899999999998776553  46777764

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PRK13616 lipoprotein LpqB; Provisional

Probab=92.77  E-value=3.9  Score=39.94  Aligned_cols=98  Identities=9%  Similarity=-0.031  Sum_probs=55.6

Q ss_pred             cEEEEEeeeCCCccEEEEEcC------------CCeEEEEECCCCeEEEEeccCCCCEEEEEEecCCCEEEEEeCCCCEE
Q psy4650          80 GVNCVDYYHGGDKPYLISGAD------------DRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVR  147 (381)
Q Consensus        80 ~v~~~~~~~~~~~~~l~s~~~------------d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~  147 (381)
                      ..+.-.|+|+|.  .+.+.+.            .+.+.+.++..+....   ...+.|..+.|+|||..++... ++.|.
T Consensus       398 ~~t~PsWspDG~--~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~  471 (591)
T PRK13616        398 SLTRPSWSLDAD--AVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVY  471 (591)
T ss_pred             CCCCceECCCCC--ceEEEecCcceEEEeccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEE
Confidence            377889999876  3544432            2233333444333222   2345799999999999777655 46666


Q ss_pred             E---EeCCCCee-e---EEEec-CCcceEEEEEcCCCCEEEEEeC
Q psy4650         148 V---WHSGTHRL-E---ISLTY-GLERVWTISSLKGSNNVAIGYD  184 (381)
Q Consensus       148 v---wd~~~~~~-~---~~~~~-~~~~v~~v~~~~~~~~l~~~~~  184 (381)
                      +   -....|.. +   ..+.. ....+.++.|.+++.++ .+..
T Consensus       472 Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~-V~~~  515 (591)
T PRK13616        472 LAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSLV-VGRS  515 (591)
T ss_pred             EEEEEeCCCCceeecccEEeecccCCccccceEecCCEEE-EEec
Confidence            6   44344431 1   11222 22335778899888755 4443

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=92.58  E-value=0.47  Score=43.18  Aligned_cols=82  Identities=10%  Similarity=-0.029  Sum_probs=54.9

Q ss_pred             CCeEEEEECCCCeEEEEeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEE-ecC----------------
Q psy4650         101 DRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISL-TYG----------------  163 (381)
Q Consensus       101 d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~-~~~----------------  163 (381)
                      .+.+.++|+.+++....... ...+....|+|+|..++... ++.|.+++..++...+.- .+.                
T Consensus        22 ~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv   99 (353)
T PF00930_consen   22 KGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEV   99 (353)
T ss_dssp             EEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHT
T ss_pred             ceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccc
Confidence            45678899999875443333 56788999999999888775 568999998877544321 110                


Q ss_pred             CcceEEEEEcCCCCEEEEEeC
Q psy4650         164 LERVWTISSLKGSNNVAIGYD  184 (381)
Q Consensus       164 ~~~v~~v~~~~~~~~l~~~~~  184 (381)
                      -+.-..+.|+|+|++|+....
T Consensus       100 ~~~~~~~~WSpd~~~la~~~~  120 (353)
T PF00930_consen  100 FDRRSAVWWSPDSKYLAFLRF  120 (353)
T ss_dssp             SSSSBSEEE-TTSSEEEEEEE
T ss_pred             cccccceEECCCCCEEEEEEE
Confidence            112356889999999887653

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG4441|consensus

Probab=92.43  E-value=4.8  Score=39.22  Aligned_cols=183  Identities=13%  Similarity=0.091  Sum_probs=88.3

Q ss_pred             ceEEEEEecC------CeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCC------CeEEEEECCCCe
Q psy4650          46 IEYKISYQES------SRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADD------RLVKIWDYQNKT  113 (381)
Q Consensus        46 ~~~~~s~~~d------~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d------~~v~vwd~~~~~  113 (381)
                      ..+++.|+.+      ..+..||+....-..+..+.. ...-.+++... +  ...++||.|      .++-.||..+.+
T Consensus       285 ~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~-~r~~~~~~~~~-~--~lYv~GG~~~~~~~l~~ve~YD~~~~~  360 (571)
T KOG4441|consen  285 GKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPS-PRCRVGVAVLN-G--KLYVVGGYDSGSDRLSSVERYDPRTNQ  360 (571)
T ss_pred             CeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCc-ccccccEEEEC-C--EEEEEccccCCCcccceEEEecCCCCc
Confidence            3344555555      478899987654444444442 22334444443 2  267788888      345567766654


Q ss_pred             EEE--EeccCCCCEEEEEEecCCCEEEEEeCCCC-----EEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCCC
Q psy4650         114 CVQ--TLEGHGQNISAVCFHPELPIVITGSEDGS-----VRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEG  186 (381)
Q Consensus       114 ~~~--~~~~~~~~v~~~~~~p~~~~l~s~~~d~~-----i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg  186 (381)
                      -..  .+...... .+++ .-+|...+.||.||.     +-.||..+.+.-..-......-..-...-+|...++|+.++
T Consensus       361 W~~~a~M~~~R~~-~~v~-~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~  438 (571)
T KOG4441|consen  361 WTPVAPMNTKRSD-FGVA-VLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDG  438 (571)
T ss_pred             eeccCCccCcccc-ceeE-EECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCC
Confidence            211  11111111 1111 226777788888753     66677665543221111111111111122455666666554


Q ss_pred             eEEEEecCCCceEEEecCCCEEEEEecCceeecccccCCccccccCCceEEeeehHHH
Q psy4650         187 SVLLKVGREEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSVHVT  244 (381)
Q Consensus       187 ~v~i~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~d~  244 (381)
                      .-.    .-..+..||+.++.  |.....+........    ...-++.+.+.++.++
T Consensus       439 ~~~----~l~sve~YDP~t~~--W~~~~~M~~~R~~~g----~a~~~~~iYvvGG~~~  486 (571)
T KOG4441|consen  439 SSN----CLNSVECYDPETNT--WTLIAPMNTRRSGFG----VAVLNGKIYVVGGFDG  486 (571)
T ss_pred             Ccc----ccceEEEEcCCCCc--eeecCCcccccccce----EEEECCEEEEECCccC
Confidence            431    22566779997775  544443332221111    1123566666666554

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=92.38  E-value=0.55  Score=27.58  Aligned_cols=31  Identities=16%  Similarity=0.313  Sum_probs=25.7

Q ss_pred             CCEEEEEEecCCC---EEEEEeCCCCEEEEeCCC
Q psy4650         123 QNISAVCFHPELP---IVITGSEDGSVRVWHSGT  153 (381)
Q Consensus       123 ~~v~~~~~~p~~~---~l~s~~~d~~i~vwd~~~  153 (381)
                      +.|.++.|+|...   +|+.+-.-+.+.++|+++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            4688999998544   888888889999999985

It contains a characteristic DLL sequence motif.

>KOG4441|consensus

Probab=92.24  E-value=5.6  Score=38.81  Aligned_cols=151  Identities=13%  Similarity=0.065  Sum_probs=72.2

Q ss_pred             eEEEEEecC------CeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCe-----EEEEECCCCeEE
Q psy4650          47 EYKISYQES------SRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRL-----VKIWDYQNKTCV  115 (381)
Q Consensus        47 ~~~~s~~~d------~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~-----v~vwd~~~~~~~  115 (381)
                      .+-+.|+.+      .++..||+....-..+..+............  +|.  ..+.||.||.     +-.||..+.+-.
T Consensus       334 ~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l--~g~--iYavGG~dg~~~l~svE~YDp~~~~W~  409 (571)
T KOG4441|consen  334 KLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVL--DGK--LYAVGGFDGEKSLNSVECYDPVTNKWT  409 (571)
T ss_pred             EEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEE--CCE--EEEEeccccccccccEEEecCCCCccc
Confidence            455666666      4778888865443322223222221111121  233  6778888864     556776654311


Q ss_pred             EEeccCCCCEEEEEE-ecCCCEEEEEeCC------CCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCCCeE
Q psy4650         116 QTLEGHGQNISAVCF-HPELPIVITGSED------GSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSV  188 (381)
Q Consensus       116 ~~~~~~~~~v~~~~~-~p~~~~l~s~~~d------~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v  188 (381)
                      ..-. ........+. .-+|...+.||.+      ..+..||..+.+....-.....+...-...-++.+.+.|+.||. 
T Consensus       410 ~va~-m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~~~~iYvvGG~~~~-  487 (571)
T KOG4441|consen  410 PVAP-MLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVLNGKIYVVGGFDGT-  487 (571)
T ss_pred             ccCC-CCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEEECCEEEEECCccCC-
Confidence            1110 1112222222 2256667777754      35677888776644322211111111122234566666766662 


Q ss_pred             EEEecCCCceEEEecCCCE
Q psy4650         189 LLKVGREEPAVSMDVNGCK  207 (381)
Q Consensus       189 ~i~~~~~~~~~~~d~~~~~  207 (381)
                          .....+..||+.+..
T Consensus       488 ----~~~~~VE~ydp~~~~  502 (571)
T KOG4441|consen  488 ----SALSSVERYDPETNQ  502 (571)
T ss_pred             ----CccceEEEEcCCCCc
Confidence                122335668886665

>KOG3630|consensus

Probab=92.24  E-value=0.57  Score=47.52  Aligned_cols=142  Identities=11%  Similarity=0.009  Sum_probs=85.0

Q ss_pred             eeeecCCC-ceEEEEEecCCeEEEecCCCcccee---eEee------ccccccEEEEEeeeCCCccEEEEEcCCCeEEEE
Q psy4650          38 DITTNKDM-IEYKISYQESSRVKAFNPIQVATLI---LKTL------YGHEKGVNCVDYYHGGDKPYLISGADDRLVKIW  107 (381)
Q Consensus        38 ~i~~~~~~-~~~~~s~~~d~~v~i~~~~~~~~~~---~~~l------~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vw  107 (381)
                      .+++..|. ...++..+.+-.|..||++......   ..-|      ...-....++.|.|.-.. ..+.+..|+.|++.
T Consensus       105 ~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~-n~av~l~dlsl~V~  183 (1405)
T KOG3630|consen  105 IFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPL-NSAVDLSDLSLRVK  183 (1405)
T ss_pred             EEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccc-hhhhhccccchhhh
Confidence            33344442 2234444445578889986432211   1111      122345667888875432 35677889999887


Q ss_pred             ECCCCeEEEEeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEec----CCcceEEEEEcCCCCEEEE
Q psy4650         108 DYQNKTCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTY----GLERVWTISSLKGSNNVAI  181 (381)
Q Consensus       108 d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~----~~~~v~~v~~~~~~~~l~~  181 (381)
                      .+........-..-+..++|++|+|.|..++.|-..|++.-|... ++....+.+    ....|.+|+|.....++++
T Consensus       184 ~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t~eflvv  260 (1405)
T KOG3630|consen  184 STKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLSTQEFLVV  260 (1405)
T ss_pred             hhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEEecceeEEEE
Confidence            765432221111244567999999999999999999999888653 222233322    2367899999877665544

>TIGR00904 mreB cell shape determining protein, MreB/Mrl family

Probab=91.95  E-value=0.32  Score=43.83  Aligned_cols=104  Identities=11%  Similarity=0.052  Sum_probs=69.9

Q ss_pred             HHHhhhhhhccccce-----eeEEEec--ccCCcccccccChHHHHHHHHHHhhhhhhhhHhhhccccceeeEe-eccc-
Q psy4650         263 AAAETCMHVLSTLQS-----SNVFVES--LYDGLDFHHNVSRARFESLIGGLLTSFVQPCMHVLSTLQSSNVFV-ESLY-  333 (381)
Q Consensus       263 ~~~e~ak~~lS~~~~-----~~i~~~~--l~~g~~~~~~itr~~fe~l~~~l~~~~~~~~~~~Ls~~~~~~~~~-~~~~-  333 (381)
                      ..+|+.|..++....     ..+.+..  ...+......+++++|+++..+.+.++.+.+++.|....   .++ +++. 
T Consensus       204 ~~ae~lK~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~e~i~~~~~~i~~~i~~~l~~~~---~~~~~~l~~  280 (333)
T TIGR00904       204 QTAERIKIEIGSAYPLNDEPRKMEVRGRDLVTGLPRTIEITSVEVREALQEPVNQIVEAVKRTLEKTP---PELAADIVE  280 (333)
T ss_pred             HHHHHHHHHHhccccccccccceeecCccccCCCCeEEEECHHHHHHHHHHHHHHHHHHHHHHHHhCC---chhhhhhcc
Confidence            457778887765322     1222211  122334456889999999999999999999999987643   222 2343 


Q ss_pred             -cCcceEEeecHHHHHHHHHHHHHH----hHHHHHHHHHhC
Q psy4650         334 -DGLDFHHNVSRARFESLIGGLLTS----FVQPIEDVLSRS  369 (381)
Q Consensus       334 -~~~~~~~~~~~~~~e~~~~~~~~~----~~~~~~~~l~~~  369 (381)
                       +.++.||+...|.|++++++.|+.    ..+|.+.+-.-|
T Consensus       281 ~~IvL~GGss~ipgl~e~l~~~~~~~v~~~~~P~~~va~Ga  321 (333)
T TIGR00904       281 RGIVLTGGGALLRNLDKLLSKETGLPVIVADDPLLCVAKGT  321 (333)
T ss_pred             CCEEEECcccchhhHHHHHHHHHCCCceecCChHHHHHHHH
Confidence             467789999999999999999973    334655554433

A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=91.73  E-value=7.7  Score=33.19  Aligned_cols=117  Identities=9%  Similarity=0.088  Sum_probs=72.2

Q ss_pred             EeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEEEeccCC-CCEEEEEEecCCCEEEEEeCCCCEEEEe
Q psy4650          72 KTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHG-QNISAVCFHPELPIVITGSEDGSVRVWH  150 (381)
Q Consensus        72 ~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~-~~v~~~~~~p~~~~l~s~~~d~~i~vwd  150 (381)
                      ..+.+-...+.++.|.|+... +++.....+.|...+.. |+.++.+.-.. +-.-.+++..++.++++.-.++.+.+++
T Consensus        15 ~~l~g~~~e~SGLTy~pd~~t-LfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~   92 (248)
T PF06977_consen   15 KPLPGILDELSGLTYNPDTGT-LFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFT   92 (248)
T ss_dssp             EE-TT--S-EEEEEEETTTTE-EEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEE
T ss_pred             eECCCccCCccccEEcCCCCe-EEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEE
Confidence            456676777999999997663 77777888898888864 67666664332 4568888887777777666688999998


Q ss_pred             CCCCe------eeEEEe-----cCCcceEEEEEcCCCCEEEEEeCCCeEEE
Q psy4650         151 SGTHR------LEISLT-----YGLERVWTISSLKGSNNVAIGYDEGSVLL  190 (381)
Q Consensus       151 ~~~~~------~~~~~~-----~~~~~v~~v~~~~~~~~l~~~~~dg~v~i  190 (381)
                      +....      ....+.     .+...+..++|+|.+..|..+-......+
T Consensus        93 ~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l  143 (248)
T PF06977_consen   93 IDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRL  143 (248)
T ss_dssp             E----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEE
T ss_pred             EeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhh
Confidence            84321      111221     13345889999998877777766655555

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=91.69  E-value=0.51  Score=42.96  Aligned_cols=96  Identities=7%  Similarity=-0.002  Sum_probs=51.7

Q ss_pred             CCCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCceEEEecCC------CEEEEEecCce
Q psy4650         143 DGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKVGREEPAVSMDVNG------CKIIWARHSEV  216 (381)
Q Consensus       143 d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~~~~~~~~~~d~~~------~~~~~~~~~~~  216 (381)
                      .+.+.++|+.+++....... ...+....|+|+|+.++... ++.+.+...........-.++      |.+-|....  
T Consensus        22 ~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeE--   97 (353)
T PF00930_consen   22 KGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEE--   97 (353)
T ss_dssp             EEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHH--
T ss_pred             ceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccc--
Confidence            45788999999765443332 46778899999999998887 466777432222222111111      111111111  


Q ss_pred             eecccccCCccccccCCceEEeeehHHHH
Q psy4650         217 QQANLKTMPEVFENITAGVVLTLSVHVTI  245 (381)
Q Consensus       217 ~~~~~~~~~~~~~~~~dg~~l~~~~~d~~  245 (381)
                         .+.+....+.|+|||+.++...-|.+
T Consensus        98 ---Ev~~~~~~~~WSpd~~~la~~~~d~~  123 (353)
T PF00930_consen   98 ---EVFDRRSAVWWSPDSKYLAFLRFDER  123 (353)
T ss_dssp             ---HTSSSSBSEEE-TTSSEEEEEEEE-T
T ss_pred             ---cccccccceEECCCCCEEEEEEECCc
Confidence               11111223679999999998776654

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=91.59  E-value=4.6  Score=38.43  Aligned_cols=118  Identities=9%  Similarity=0.127  Sum_probs=70.8

Q ss_pred             cccccEEEEEeeeCCC--ccEEEEEcCCCeEEEEECCCC-----eEEEEeccC-CC--CE--EEEEEecCCCEEEEEeCC
Q psy4650          76 GHEKGVNCVDYYHGGD--KPYLISGADDRLVKIWDYQNK-----TCVQTLEGH-GQ--NI--SAVCFHPELPIVITGSED  143 (381)
Q Consensus        76 ~h~~~v~~~~~~~~~~--~~~l~s~~~d~~v~vwd~~~~-----~~~~~~~~~-~~--~v--~~~~~~p~~~~l~s~~~d  143 (381)
                      |+-+-|.++.|.|.+.  .+.+....-.+.|.||.+...     +.+.....+ ..  +|  ...-|||....|+.-...
T Consensus        54 GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~  133 (671)
T PF15390_consen   54 GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTAR  133 (671)
T ss_pred             eccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecC
Confidence            5556789999998543  224666677889999988522     222111111 11  11  346799999877665544


Q ss_pred             CCEEEEeCCCC--eeeEEEecCCcceEEEEEcCCCCEEEEEeCC-CeEEEEecC
Q psy4650         144 GSVRVWHSGTH--RLEISLTYGLERVWTISSLKGSNNVAIGYDE-GSVLLKVGR  194 (381)
Q Consensus       144 ~~i~vwd~~~~--~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d-g~v~i~~~~  194 (381)
                      ..-.+++++..  +....+ ...+.|.|.||.++|+.|+++-.. =.-++|+..
T Consensus       134 dvSV~~sV~~d~srVkaDi-~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~  186 (671)
T PF15390_consen  134 DVSVLPSVHCDSSRVKADI-KTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSA  186 (671)
T ss_pred             ceeEeeeeeeCCceEEEec-cCCceEEEEEecCcCCEEEEEeCCeEEEEEecCc
Confidence            44455666532  222233 356889999999999977665433 234556543

>KOG2280|consensus

Probab=91.51  E-value=5.4  Score=39.04  Aligned_cols=49  Identities=14%  Similarity=0.234  Sum_probs=35.2

Q ss_pred             eEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCC
Q psy4650          57 RVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQN  111 (381)
Q Consensus        57 ~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~  111 (381)
                      .|+||+.   .++++..+--..+.+..+.|+.+..   |++...+|++++++...
T Consensus        65 ~I~If~~---sG~lL~~~~w~~~~lI~mgWs~~ee---LI~v~k~g~v~Vy~~~g  113 (829)
T KOG2280|consen   65 YIRIFNI---SGQLLGRILWKHGELIGMGWSDDEE---LICVQKDGTVHVYGLLG  113 (829)
T ss_pred             eEEEEec---cccchHHHHhcCCCeeeecccCCce---EEEEeccceEEEeecch
Confidence            4666666   3455555444445899999986554   88889999999999854

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=91.50  E-value=2.6  Score=36.41  Aligned_cols=124  Identities=13%  Similarity=0.101  Sum_probs=76.0

Q ss_pred             eccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEec-CCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCC
Q psy4650         118 LEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTY-GLERVWTISSLKGSNNVAIGYDEGSVLLKVGREE  196 (381)
Q Consensus       118 ~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~-~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~~~~~  196 (381)
                      +.+-...+.++.|+|+.+.|.+......-.||=-..|+.+.+++- .-.....+.|..+|.++++--.++.+.+..    
T Consensus        81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~----  156 (316)
T COG3204          81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFT----  156 (316)
T ss_pred             cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEE----
Confidence            345555699999999999888887777777887778888887753 234456678888888777777777777633    


Q ss_pred             ceEEEecCCCEEEEEec---CceeecccccCCccccccCCceEEeeehHHHHHhccC
Q psy4650         197 PAVSMDVNGCKIIWARH---SEVQQANLKTMPEVFENITAGVVLTLSVHVTIKYRLD  250 (381)
Q Consensus       197 ~~~~~d~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~dg~~l~~~~~d~~~~~~d  250 (381)
                          .|.++........   -+.....-.++. .+++.|....+..+-.-+...++.
T Consensus       157 ----vd~~t~~~~~~~~~i~L~~~~k~N~GfE-GlA~d~~~~~l~~aKEr~P~~I~~  208 (316)
T COG3204         157 ----VDADTTVISAKVQKIPLGTTNKKNKGFE-GLAWDPVDHRLFVAKERNPIGIFE  208 (316)
T ss_pred             ----EcCCccEEeccceEEeccccCCCCcCce-eeecCCCCceEEEEEccCCcEEEE
Confidence                4544443322211   000000011111 156777777777776655444433

>TIGR01174 ftsA cell division protein FtsA

Probab=91.43  E-value=0.64  Score=42.63  Aligned_cols=67  Identities=12%  Similarity=0.137  Sum_probs=50.7

Q ss_pred             hhhhhhhHhhhcccc------ceeeEeeccccCcceEEeecHHHHHHHHHHHHHHhHHHHH-HHHHhCCCCcccccc
Q psy4650         309 TSFVQPCMHVLSTLQ------SSNVFVESLYDGLDFHHNVSRARFESLIGGLLTSFVQPIE-DVLSRSNITHDQINK  378 (381)
Q Consensus       309 ~~~~~~~~~~Ls~~~------~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~-~~l~~~~~~~~~i~~  378 (381)
                      ...++.+|+.+....      ...++++.+.  ......+++..|++++++.+.++++.++ ++|++++++ ++|+.
T Consensus       243 ~~~AE~lK~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~is~~~l~~ii~~~~~ei~~~i~~~~L~~~~~~-~~i~~  316 (371)
T TIGR01174       243 LEEAERIKIKYGCASIPLEGPDENIEIPSVG--ERPPRSLSRKELAEIIEARAEEILEIVKQKELRKSGFK-EELNG  316 (371)
T ss_pred             HHHHHHHHHHeeEecccCCCCCCEEEeccCC--CCCCeEEcHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-ccCCC
Confidence            344666777666531      3445555443  2456799999999999999999999998 999999988 77776

This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.

>PHA02713 hypothetical protein; Provisional

Probab=91.01  E-value=5.1  Score=39.02  Aligned_cols=65  Identities=12%  Similarity=0.088  Sum_probs=32.7

Q ss_pred             CCCEEEEEeCC------CCEEEEeCCC-Ceee--EEEecCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCceEEEec
Q psy4650         133 ELPIVITGSED------GSVRVWHSGT-HRLE--ISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKVGREEPAVSMDV  203 (381)
Q Consensus       133 ~~~~l~s~~~d------~~i~vwd~~~-~~~~--~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~~~~~~~~~~d~  203 (381)
                      ++...+.||.+      ..+..||..+ .+..  ..+.........+.+  +|+..++|+.+|..        .+..||+
T Consensus       463 ~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~~~--------~~e~yd~  532 (557)
T PHA02713        463 KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH--DNTIMMLHCYESYM--------LQDTFNV  532 (557)
T ss_pred             CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE--CCEEEEEeeeccee--------ehhhcCc
Confidence            45655666653      2356788876 4432  223222222222222  56667777766621        2344777


Q ss_pred             CCCE
Q psy4650         204 NGCK  207 (381)
Q Consensus       204 ~~~~  207 (381)
                      .+++
T Consensus       533 ~~~~  536 (557)
T PHA02713        533 YTYE  536 (557)
T ss_pred             cccc
Confidence            5554

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=90.92  E-value=20  Score=36.36  Aligned_cols=120  Identities=14%  Similarity=0.089  Sum_probs=72.2

Q ss_pred             EEEEEcCCCeEEEEECCCCeEEEEeccCCCCEE-------------EEEEec--CCCEEEEEeC----------CCCEEE
Q psy4650          94 YLISGADDRLVKIWDYQNKTCVQTLEGHGQNIS-------------AVCFHP--ELPIVITGSE----------DGSVRV  148 (381)
Q Consensus        94 ~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~-------------~~~~~p--~~~~l~s~~~----------d~~i~v  148 (381)
                      .++.++.|+.+.-.|.++|+....+.. .+.|.             .+.-.|  .+..++.|+.          +|.|+=
T Consensus       262 rV~~~T~Dg~LiALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A  340 (764)
T TIGR03074       262 RIILPTSDARLIALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRA  340 (764)
T ss_pred             EEEEecCCCeEEEEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEE
Confidence            677888899999999999998876642 11110             111112  1234555532          688999


Q ss_pred             EeCCCCeeeEEEecCC---------c--------ce-EEEEEcCCCCEEEEEeCCCeEEEEe--------cCCCceEEEe
Q psy4650         149 WHSGTHRLEISLTYGL---------E--------RV-WTISSLKGSNNVAIGYDEGSVLLKV--------GREEPAVSMD  202 (381)
Q Consensus       149 wd~~~~~~~~~~~~~~---------~--------~v-~~v~~~~~~~~l~~~~~dg~v~i~~--------~~~~~~~~~d  202 (381)
                      +|..+|+.+..+....         +        .+ ...++++....+..+..+..--.|.        .....++..|
T Consensus       341 ~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD  420 (764)
T TIGR03074       341 FDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALD  420 (764)
T ss_pred             EECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEe
Confidence            9999999998875310         0        11 1234444444444443333222221        1236788899


Q ss_pred             cCCCEEEEEecC
Q psy4650         203 VNGCKIIWARHS  214 (381)
Q Consensus       203 ~~~~~~~~~~~~  214 (381)
                      .++|+..|..+.
T Consensus       421 ~~TGk~~W~~Q~  432 (764)
T TIGR03074       421 ATTGKERWVFQT  432 (764)
T ss_pred             CCCCceEEEecc
Confidence            999999998765

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=90.86  E-value=4.1  Score=37.68  Aligned_cols=89  Identities=13%  Similarity=0.091  Sum_probs=61.1

Q ss_pred             EeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEEEeccCCCC-EEEEEEecC-C---------------
Q psy4650          72 KTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQN-ISAVCFHPE-L---------------  134 (381)
Q Consensus        72 ~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~-v~~~~~~p~-~---------------  134 (381)
                      ..+......+.++..+|++.  +.+....-|.|.++|+.++..++.++|..+. +.-+..... .               
T Consensus       301 ~~l~D~~R~~~~i~~sP~~~--laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~  378 (415)
T PF14655_consen  301 FGLPDSKREGESICLSPSGR--LAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRF  378 (415)
T ss_pred             EeeccCCceEEEEEECCCCC--EEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcc
Confidence            34445556788999999865  7888888899999999999888888876542 111111101 0               


Q ss_pred             C--EEEEEeCCCCEEEEeCCCCeeeEEEec
Q psy4650         135 P--IVITGSEDGSVRVWHSGTHRLEISLTY  162 (381)
Q Consensus       135 ~--~l~s~~~d~~i~vwd~~~~~~~~~~~~  162 (381)
                      .  +++-...-|.|-||.+++|..+..+..
T Consensus       379 ~l~LvIyaprRg~lEvW~~~~g~Rv~a~~v  408 (415)
T PF14655_consen  379 ALFLVIYAPRRGILEVWSMRQGPRVAAFNV  408 (415)
T ss_pred             eEEEEEEeccCCeEEEEecCCCCEEEEEEe
Confidence            1  234456688999999998887776653

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=90.76  E-value=1.4  Score=25.96  Aligned_cols=33  Identities=18%  Similarity=0.245  Sum_probs=26.0

Q ss_pred             ccEEEEEeeeCCC-ccEEEEEcCCCeEEEEECCC
Q psy4650          79 KGVNCVDYYHGGD-KPYLISGADDRLVKIWDYQN  111 (381)
Q Consensus        79 ~~v~~~~~~~~~~-~~~l~s~~~d~~v~vwd~~~  111 (381)
                      +.|.++.|+|.+. ..+|+-+-.-+.|.++|+++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            4688999997443 23788888889999999985

It contains a characteristic DLL sequence motif.

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=90.76  E-value=10  Score=38.01  Aligned_cols=71  Identities=15%  Similarity=0.179  Sum_probs=43.4

Q ss_pred             cEEEEEeeeCCCccEEEEEcCCCeEEEEECC---------CCeE--E-EEe--------ccCCCCEEEEEEecCC---CE
Q psy4650          80 GVNCVDYYHGGDKPYLISGADDRLVKIWDYQ---------NKTC--V-QTL--------EGHGQNISAVCFHPEL---PI  136 (381)
Q Consensus        80 ~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~---------~~~~--~-~~~--------~~~~~~v~~~~~~p~~---~~  136 (381)
                      .|..+.++|+|.  +++-.|..|...+.=.+         .|..  . +++        ..+...|..+.|||.+   ..
T Consensus        86 ~v~~i~~n~~g~--~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~  163 (717)
T PF10168_consen   86 EVHQISLNPTGS--LLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH  163 (717)
T ss_pred             eEEEEEECCCCC--EEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence            466777888776  67777766654442221         1111  0 111        1234567888888864   57


Q ss_pred             EEEEeCCCCEEEEeCC
Q psy4650         137 VITGSEDGSVRVWHSG  152 (381)
Q Consensus       137 l~s~~~d~~i~vwd~~  152 (381)
                      |+.=..|+++|+||+.
T Consensus       164 l~vLtsdn~lR~y~~~  179 (717)
T PF10168_consen  164 LVVLTSDNTLRLYDIS  179 (717)
T ss_pred             EEEEecCCEEEEEecC
Confidence            7777778888888874

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=90.71  E-value=5.2  Score=37.38  Aligned_cols=140  Identities=12%  Similarity=0.090  Sum_probs=79.7

Q ss_pred             CCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCC------ccEEEEEcCCCeEEEEECCC-CeEEE
Q psy4650          44 DMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGD------KPYLISGADDRLVKIWDYQN-KTCVQ  116 (381)
Q Consensus        44 ~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~------~~~l~s~~~d~~v~vwd~~~-~~~~~  116 (381)
                      +...++..|+....++--|++  -+.++....-|.+.  -+.|.|...      .+.|+.-|..+..+| |.+- |..+.
T Consensus       478 dssli~~dg~~~~kLykmDIE--rGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrI-DPR~~gNKi~  552 (776)
T COG5167         478 DSSLIYLDGGERDKLYKMDIE--RGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRI-DPRARGNKIK  552 (776)
T ss_pred             CcceEEecCCCcccceeeecc--cceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEe-cccccCCcee
Confidence            434455566655555555554  34455555555554  344554321      113444444444443 4332 22111


Q ss_pred             EeccCCCCEEEEEEe----cCCCEEEEEeCCCCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCCCeEE
Q psy4650         117 TLEGHGQNISAVCFH----PELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVL  189 (381)
Q Consensus       117 ~~~~~~~~v~~~~~~----p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~  189 (381)
                      .. .....++.-.|+    ....++|.+|..|-|++||.-+-+....+++....+-.+..+.+|.++++.|..-.+.
T Consensus       553 v~-esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~yllL  628 (776)
T COG5167         553 VV-ESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKNYLLL  628 (776)
T ss_pred             ee-eehhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecceEEE
Confidence            11 112222322333    2445899999999999999776666666777778888999999999988877654443

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=90.59  E-value=14  Score=36.54  Aligned_cols=111  Identities=17%  Similarity=0.102  Sum_probs=72.0

Q ss_pred             EEEEEeeeCCCccEEEEEcCCCeEEEEECCCC--------------------eEEEEeccCCCCEEEEEEe--cCCCEEE
Q psy4650          81 VNCVDYYHGGDKPYLISGADDRLVKIWDYQNK--------------------TCVQTLEGHGQNISAVCFH--PELPIVI  138 (381)
Q Consensus        81 v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~--------------------~~~~~~~~~~~~v~~~~~~--p~~~~l~  138 (381)
                      |+-+....-+....|+.|..||.|.+|..++-                    ++...++ -...++.++++  ...+++|
T Consensus       103 IN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIA  181 (717)
T PF08728_consen  103 INFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIA  181 (717)
T ss_pred             eeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEE
Confidence            44554444445558999999999999965320                    1122233 23478999998  7778899


Q ss_pred             EEeCCCCEEEEeCCCC--eeeEE-EecCCcceEEEEEcCCC---C---EEEEEeCCCeEEEEe
Q psy4650         139 TGSEDGSVRVWHSGTH--RLEIS-LTYGLERVWTISSLKGS---N---NVAIGYDEGSVLLKV  192 (381)
Q Consensus       139 s~~~d~~i~vwd~~~~--~~~~~-~~~~~~~v~~v~~~~~~---~---~l~~~~~dg~v~i~~  192 (381)
                      .++....|.||-....  +.... -..+...|.+|+|.++.   .   .+++++-.|.+.+|.
T Consensus       182 VSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~  244 (717)
T PF08728_consen  182 VSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFK  244 (717)
T ss_pred             EecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEE
Confidence            9988888888865432  11111 11255678889998753   2   677788888887743

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=90.59  E-value=8.9  Score=37.50  Aligned_cols=112  Identities=13%  Similarity=0.095  Sum_probs=61.2

Q ss_pred             EEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEe-cCCcceEEEEEc--CCCCEEEEEeCCCeEEEEecCCCceEEEe
Q psy4650         126 SAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLT-YGLERVWTISSL--KGSNNVAIGYDEGSVLLKVGREEPAVSMD  202 (381)
Q Consensus       126 ~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~-~~~~~v~~v~~~--~~~~~l~~~~~dg~v~i~~~~~~~~~~~d  202 (381)
                      ..+.-+.-++..+.-+....+.|||.+.+.....-. ...+.|..+.|.  |+|+.+.+-+-.+.|.+..-..     +|
T Consensus        33 ~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R-----~d  107 (631)
T PF12234_consen   33 SLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLR-----YD  107 (631)
T ss_pred             ceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccc-----hh
Confidence            344434444433334445689999999988665543 346788999887  6777777767777777754221     33


Q ss_pred             cCCCEEEEEecCceeecccccCCc-cccccCCceEEeeehH
Q psy4650         203 VNGCKIIWARHSEVQQANLKTMPE-VFENITAGVVLTLSVH  242 (381)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~dg~~l~~~~~  242 (381)
                      .....+-|..-..........++. ...|.++|..++..+.
T Consensus       108 y~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sGN  148 (631)
T PF12234_consen  108 YTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSGN  148 (631)
T ss_pred             hhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeCC
Confidence            333333333222222222222221 1456677777665544

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PRK09472 ftsA cell division protein FtsA; Reviewed

Probab=90.40  E-value=0.41  Score=44.70  Aligned_cols=93  Identities=11%  Similarity=0.010  Sum_probs=60.4

Q ss_pred             HHHHhhhhhhcc----cc--ceeeEEEecccCCcccccccChHHHHHHHHHHhhhhhhhhHhhhccc----cceeeEeec
Q psy4650         262 RAAAETCMHVLS----TL--QSSNVFVESLYDGLDFHHNVSRARFESLIGGLLTSFVQPCMHVLSTL----QSSNVFVES  331 (381)
Q Consensus       262 ~~~~e~ak~~lS----~~--~~~~i~~~~l~~g~~~~~~itr~~fe~l~~~l~~~~~~~~~~~Ls~~----~~~~~~~~~  331 (381)
                      ...+|+.|....    ..  .+..+.++...++  -...++|..|++++.+.+.++.+.+++.+...    ..+.+....
T Consensus       251 ~~~AE~lK~~~g~~~~~~~~~~~~i~v~~~~~~--~~~~i~~~~l~~ii~~r~~ei~~~i~~~l~~~~~~l~~~g~~~~~  328 (420)
T PRK09472        251 PSDAEAIKVRHGCALGSIVGKDESVEVPSVGGR--PPRSLQRQTLAEVIEPRYTELLNLVNEEILQLQEQLRQQGVKHHL  328 (420)
T ss_pred             HHHHHHHHHhcceeccccCCCCceeEecCCCCC--CCeEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccC
Confidence            456788885432    21  2345666644222  23478899999999996666555555444221    113333344


Q ss_pred             cccCcceEEeecHHHHHHHHHHHHH
Q psy4650         332 LYDGLDFHHNVSRARFESLIGGLLT  356 (381)
Q Consensus       332 ~~~~~~~~~~~~~~~~e~~~~~~~~  356 (381)
                      ..+.++.||....|.+.++++++|+
T Consensus       329 ~~givLtGG~a~lpgi~e~~~~~f~  353 (420)
T PRK09472        329 AAGIVLTGGAAQIEGLAACAQRVFH  353 (420)
T ss_pred             CCEEEEeCchhccccHHHHHHHHhC
Confidence            5567888999999999999999998

>PRK13927 rod shape-determining protein MreB; Provisional

Probab=90.19  E-value=1.8  Score=39.09  Aligned_cols=62  Identities=13%  Similarity=0.136  Sum_probs=45.1

Q ss_pred             hhhhhHhhhccccc----eeeEe--eccccCcceEEeecHHHHHHHHHHHHHHhHHHHHHHHHhCCCC
Q psy4650         311 FVQPCMHVLSTLQS----SNVFV--ESLYDGLDFHHNVSRARFESLIGGLLTSFVQPIEDVLSRSNIT  372 (381)
Q Consensus       311 ~~~~~~~~Ls~~~~----~~~~~--~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~l~~~~~~  372 (381)
                      .++.+|+.++....    ..+.+  +++..+......+++++|++++.+++.++.+.++++|++++.+
T Consensus       203 ~ae~iK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~e~i~~~~~~i~~~i~~~l~~~~~~  270 (334)
T PRK13927        203 TAERIKIEIGSAYPGDEVLEMEVRGRDLVTGLPKTITISSNEIREALQEPLSAIVEAVKVALEQTPPE  270 (334)
T ss_pred             HHHHHHHHhhccCCCCCCceEEEeCcccCCCCCeEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCch
Confidence            46777777765332    22222  2233344567899999999999999999999999999999754

>KOG3630|consensus

Probab=90.16  E-value=1.7  Score=44.43  Aligned_cols=112  Identities=13%  Similarity=0.102  Sum_probs=72.4

Q ss_pred             cEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeE-----EEEecc------CCCCEEEEEEecCCC-EEEEEeCCCCEE
Q psy4650          80 GVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTC-----VQTLEG------HGQNISAVCFHPELP-IVITGSEDGSVR  147 (381)
Q Consensus        80 ~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~-----~~~~~~------~~~~v~~~~~~p~~~-~l~s~~~d~~i~  147 (381)
                      ++.-+...+|+....+...+.+-.|..||+..-..     ..-+..      ......++.|+|.-. ..+.+..|+.|+
T Consensus       102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~  181 (1405)
T KOG3630|consen  102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR  181 (1405)
T ss_pred             cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence            45555566666544555666666788999875321     111221      223456888998655 456667788888


Q ss_pred             EEeCCCCee-eEEEecCCcceEEEEEcCCCCEEEEEeCCCeEEEEe
Q psy4650         148 VWHSGTHRL-EISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKV  192 (381)
Q Consensus       148 vwd~~~~~~-~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~  192 (381)
                      +.-+.-... +.++. ....+++++|+|.|+.++.|-.+|++.-+.
T Consensus       182 V~~~~~~~~~v~s~p-~t~~~Tav~WSprGKQl~iG~nnGt~vQy~  226 (1405)
T KOG3630|consen  182 VKSTKQLAQNVTSFP-VTNSQTAVLWSPRGKQLFIGRNNGTEVQYE  226 (1405)
T ss_pred             hhhhhhhhhhhcccC-cccceeeEEeccccceeeEecCCCeEEEee
Confidence            887653222 22222 346789999999999999999999887643

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=89.80  E-value=11  Score=32.64  Aligned_cols=128  Identities=10%  Similarity=0.081  Sum_probs=77.3

Q ss_pred             EEEeeeCCCccEEEEEcCCCeE-EEEECCCCeEEEEeccCCCC--EEEEEEecCCCEEEEEeC-----CCCEEEEeCCCC
Q psy4650          83 CVDYYHGGDKPYLISGADDRLV-KIWDYQNKTCVQTLEGHGQN--ISAVCFHPELPIVITGSE-----DGSVRVWHSGTH  154 (381)
Q Consensus        83 ~~~~~~~~~~~~l~s~~~d~~v-~vwd~~~~~~~~~~~~~~~~--v~~~~~~p~~~~l~s~~~-----d~~i~vwd~~~~  154 (381)
                      .+.++|... ..++-+-.-|+. .++|..+.....++...++.  --.=.|||+|.+|...-.     -|.|=|||.+.+
T Consensus        72 gi~~~p~~~-ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~  150 (366)
T COG3490          72 GIAFHPALP-RAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREG  150 (366)
T ss_pred             CeecCCCCc-ceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecccc
Confidence            566666443 245555555553 47888777655444322211  112258999998876633     478999999854


Q ss_pred             -eeeEEEecCCcceEEEEEcCCCCEEEEEeC-------CCeEEEEe-cCCCceEEEecCCCEEEEE
Q psy4650         155 -RLEISLTYGLERVWTISSLKGSNNVAIGYD-------EGSVLLKV-GREEPAVSMDVNGCKIIWA  211 (381)
Q Consensus       155 -~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~-------dg~v~i~~-~~~~~~~~~d~~~~~~~~~  211 (381)
                       +.+..+..|.-....+.+.++|+.++.+..       -|...+.. .+..+.+..|..+|.++-.
T Consensus       151 fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liek  216 (366)
T COG3490         151 FQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEK  216 (366)
T ss_pred             cceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhh
Confidence             345566777777778999999998877632       23333332 3334455667666765543

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=89.68  E-value=13  Score=37.53  Aligned_cols=68  Identities=12%  Similarity=0.020  Sum_probs=48.8

Q ss_pred             EEEEEcCCCeEEEEECCCCeEEEEeccCCCC--------EEEEEEec----------------CCCEEEEEeCCCCEEEE
Q psy4650          94 YLISGADDRLVKIWDYQNKTCVQTLEGHGQN--------ISAVCFHP----------------ELPIVITGSEDGSVRVW  149 (381)
Q Consensus        94 ~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~--------v~~~~~~p----------------~~~~l~s~~~d~~i~vw  149 (381)
                      .+..++.++.|.-.|..+|+.+..+.-....        ...+++..                ++..+..++.|+.+.-.
T Consensus       196 ~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiAL  275 (764)
T TIGR03074       196 TLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIAL  275 (764)
T ss_pred             EEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEEEE
Confidence            5777888999999999999988877532210        12233321                23477778889999999


Q ss_pred             eCCCCeeeEEEe
Q psy4650         150 HSGTHRLEISLT  161 (381)
Q Consensus       150 d~~~~~~~~~~~  161 (381)
                      |..+|+.+..+.
T Consensus       276 DA~TGk~~W~fg  287 (764)
T TIGR03074       276 DADTGKLCEDFG  287 (764)
T ss_pred             ECCCCCEEEEec
Confidence            999999988764

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=89.38  E-value=7.1  Score=37.71  Aligned_cols=115  Identities=17%  Similarity=0.174  Sum_probs=66.6

Q ss_pred             EEEEEcCCCeEEEEECCCCeEEEEeccCC-CCEEE----------EEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEec
Q psy4650          94 YLISGADDRLVKIWDYQNKTCVQTLEGHG-QNISA----------VCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTY  162 (381)
Q Consensus        94 ~l~s~~~d~~v~vwd~~~~~~~~~~~~~~-~~v~~----------~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~  162 (381)
                      .+..++.++.|.-.|..+|+.+..+.... ..+..          +++  .+..++.++.|+.+.-.|..+|+.+.....
T Consensus        71 ~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W~~~~  148 (527)
T TIGR03075        71 VMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVWSKKN  148 (527)
T ss_pred             EEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEeeccc
Confidence            56777778899999999999887765321 11111          122  234566777899999999999999887653


Q ss_pred             CCcc-eEEEEEcC---CCCEEEEEeCCCeEEEEecCCCceEEEecCCCEEEEEecCc
Q psy4650         163 GLER-VWTISSLK---GSNNVAIGYDEGSVLLKVGREEPAVSMDVNGCKIIWARHSE  215 (381)
Q Consensus       163 ~~~~-v~~v~~~~---~~~~l~~~~~dg~v~i~~~~~~~~~~~d~~~~~~~~~~~~~  215 (381)
                      .... -..+.-.|   ++ .++.+...+.    .+.+..+..+|..+|+.+|.....
T Consensus       149 ~~~~~~~~~tssP~v~~g-~Vivg~~~~~----~~~~G~v~AlD~~TG~~lW~~~~~  200 (527)
T TIGR03075       149 GDYKAGYTITAAPLVVKG-KVITGISGGE----FGVRGYVTAYDAKTGKLVWRRYTV  200 (527)
T ss_pred             ccccccccccCCcEEECC-EEEEeecccc----cCCCcEEEEEECCCCceeEeccCc
Confidence            2110 00111111   22 2333221000    011234455999999999986543

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>KOG4460|consensus

Probab=89.17  E-value=10  Score=35.68  Aligned_cols=71  Identities=14%  Similarity=0.141  Sum_probs=37.4

Q ss_pred             EEEEEeeeCCCccEEEEEcCCCeEEEEECC---------CCeEEE---Ee--------ccCCCCEEEEEEecCC---CEE
Q psy4650          81 VNCVDYYHGGDKPYLISGADDRLVKIWDYQ---------NKTCVQ---TL--------EGHGQNISAVCFHPEL---PIV  137 (381)
Q Consensus        81 v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~---------~~~~~~---~~--------~~~~~~v~~~~~~p~~---~~l  137 (381)
                      |..+..++.|.  .++-+|.+|.+.++-.+         .|+..-   ++        +...-.+..++|||+.   ..+
T Consensus       106 V~~vl~s~~GS--~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL  183 (741)
T KOG4460|consen  106 VYQVLLSPTGS--HVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHL  183 (741)
T ss_pred             EEEEEecCCCc--eEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceE
Confidence            55566777666  67777778877654321         121110   00        0111234456677754   355


Q ss_pred             EEEeCCCCEEEEeCCC
Q psy4650         138 ITGSEDGSVRVWHSGT  153 (381)
Q Consensus       138 ~s~~~d~~i~vwd~~~  153 (381)
                      ..-+.|.++|+||+..
T Consensus       184 ~iL~sdnviRiy~lS~  199 (741)
T KOG4460|consen  184 VLLTSDNVIRIYSLSE  199 (741)
T ss_pred             EEEecCcEEEEEecCC
Confidence            5555666777776643

>PRK13929 rod-share determining protein MreBH; Provisional

Probab=88.96  E-value=2.9  Score=37.74  Aligned_cols=71  Identities=11%  Similarity=0.099  Sum_probs=49.9

Q ss_pred             hhhhhhHhhhccccc----eeeEee--ccccCcceEEeecHHHHHHHHHHHHHHhHHHHHHHHHhCCCC--ccccc-ccc
Q psy4650         310 SFVQPCMHVLSTLQS----SNVFVE--SLYDGLDFHHNVSRARFESLIGGLLTSFVQPIEDVLSRSNIT--HDQIN-KFT  380 (381)
Q Consensus       310 ~~~~~~~~~Ls~~~~----~~~~~~--~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~l~~~~~~--~~~i~-~v~  380 (381)
                      ..++.+|+.++....    ..+++.  ++..+......+++++|++++.+++.++.+.++++|++++.+  .+.++ .|+
T Consensus       204 ~~AE~iK~~l~~~~~~~~~~~~~v~g~~~~~~~p~~i~i~~~~~~~~i~~~l~~i~~~i~~~L~~~~~~l~~~~~~~gIv  283 (335)
T PRK13929        204 RTAEQVKMEIGYALIEHEPETMEVRGRDLVTGLPKTITLESKEIQGAMRESLLHILEAIRATLEDCPPELSGDIVDRGVI  283 (335)
T ss_pred             HHHHHHHHHHcCCCCCCCCceEEEeCCccCCCCCeEEEEcHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchhhcCCCEE
Confidence            467888888876321    122222  122334466789999999999999999999999999998644  46666 354

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=88.32  E-value=3.7  Score=40.47  Aligned_cols=116  Identities=12%  Similarity=0.062  Sum_probs=73.5

Q ss_pred             cceeeeecCCCceEEEEEecCCeEEEecCCCccc------------------eeeEeeccccccEEEEEeeeCCCccEEE
Q psy4650          35 TKVDITTNKDMIEYKISYQESSRVKAFNPIQVAT------------------LILKTLYGHEKGVNCVDYYHGGDKPYLI   96 (381)
Q Consensus        35 ~~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~------------------~~~~~l~~h~~~v~~~~~~~~~~~~~l~   96 (381)
                      .++.++..=.+.++|+.+.+||.|.+|..+.+..                  .+...+. -...+++++++.....+++|
T Consensus       103 IN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIA  181 (717)
T PF08728_consen  103 INFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIA  181 (717)
T ss_pred             eeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEE
Confidence            4444444446688999999999999996532110                  0111111 23478888887323445888


Q ss_pred             EEcCCCeEEEEECCCCeEEEE---eccCCCCEEEEEEecCC---C---EEEEEeCCCCEEEEeC
Q psy4650          97 SGADDRLVKIWDYQNKTCVQT---LEGHGQNISAVCFHPEL---P---IVITGSEDGSVRVWHS  151 (381)
Q Consensus        97 s~~~d~~v~vwd~~~~~~~~~---~~~~~~~v~~~~~~p~~---~---~l~s~~~d~~i~vwd~  151 (381)
                      .++....|.||-+........   -..|...|.+|+|-++.   .   .+++++=.|.+.+|++
T Consensus       182 VSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  182 VSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             EecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            888889899886654211111   11255678899997744   2   6677777999988877

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=88.25  E-value=13  Score=34.13  Aligned_cols=112  Identities=13%  Similarity=0.124  Sum_probs=66.6

Q ss_pred             EEEEEcCCCeEEEEECCCCeEEEEeccCC--CCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEecCCcceEEEE
Q psy4650          94 YLISGADDRLVKIWDYQNKTCVQTLEGHG--QNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTIS  171 (381)
Q Consensus        94 ~l~s~~~d~~v~vwd~~~~~~~~~~~~~~--~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~  171 (381)
                      .+..+..+|.+.-.|..++..+.....-.  ..+..-....+|. +..++.++.+..+|.++|+.+....... .   ..
T Consensus        70 ~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~-~---~~  144 (370)
T COG1520          70 TVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGG-S---PY  144 (370)
T ss_pred             eEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCC-C---eE
Confidence            36666788888888888887655433221  1222222222554 6777888889999999999988887654 1   11


Q ss_pred             EcCCCCEEEEEeCCCeEEEEecCCCceEEEecCCCEEEEEecCce
Q psy4650         172 SLKGSNNVAIGYDEGSVLLKVGREEPAVSMDVNGCKIIWARHSEV  216 (381)
Q Consensus       172 ~~~~~~~l~~~~~dg~v~i~~~~~~~~~~~d~~~~~~~~~~~~~~  216 (381)
                      +...     ....|+.+.+.. .+..+...+..+|...|......
T Consensus       145 ~~~~-----~v~~~~~v~~~s-~~g~~~al~~~tG~~~W~~~~~~  183 (370)
T COG1520         145 YASP-----PVVGDGTVYVGT-DDGHLYALNADTGTLKWTYETPA  183 (370)
T ss_pred             EecC-----cEEcCcEEEEec-CCCeEEEEEccCCcEEEEEecCC
Confidence            1100     011233333322 33444559999999999966543

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=87.17  E-value=25  Score=32.56  Aligned_cols=146  Identities=14%  Similarity=0.153  Sum_probs=78.2

Q ss_pred             ceEEEEEecCCeEEEecCCCccceeeEeecc------ccccEEEEEeee---CCC---ccEEEEEcCCCeEEEEECCC--
Q psy4650          46 IEYKISYQESSRVKAFNPIQVATLILKTLYG------HEKGVNCVDYYH---GGD---KPYLISGADDRLVKIWDYQN--  111 (381)
Q Consensus        46 ~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~------h~~~v~~~~~~~---~~~---~~~l~s~~~d~~v~vwd~~~--  111 (381)
                      ..+++.|..+|.+.+.|++...-.....+..      ....++++.|..   .++   ...+..|...|.+.+|.+..  
T Consensus        97 iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~  176 (395)
T PF08596_consen   97 IGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKILPSS  176 (395)
T ss_dssp             TSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-G
T ss_pred             CcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEeCCCCEEEEEEecCC
Confidence            4488889999999999997532222223433      335688888863   222   24678888899999997742  


Q ss_pred             -CeE----EEEeccCCCCEEEEE-EecC-----------------C---CEEEEEeCCCCEEEEeCCCCeeeEEEecCCc
Q psy4650         112 -KTC----VQTLEGHGQNISAVC-FHPE-----------------L---PIVITGSEDGSVRVWHSGTHRLEISLTYGLE  165 (381)
Q Consensus       112 -~~~----~~~~~~~~~~v~~~~-~~p~-----------------~---~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~  165 (381)
                       +..    ......+.++|..+. ++.+                 +   +.++....+..++++...+.+..........
T Consensus       177 ~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~~k~~~K~~~~~~  256 (395)
T PF08596_consen  177 NGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFKPPKSKGAHKSFDDPF  256 (395)
T ss_dssp             GG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-TT---EEEEE-SS-E
T ss_pred             CCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEeCCCCcccceeecccc
Confidence             211    112223455655554 3211                 1   1233334467799999988776554442223


Q ss_pred             ceEEEEEc-----CCCCEEEEEeCCCeEEEE
Q psy4650         166 RVWTISSL-----KGSNNVAIGYDEGSVLLK  191 (381)
Q Consensus       166 ~v~~v~~~-----~~~~~l~~~~~dg~v~i~  191 (381)
                      .+..+++.     ..+..|++-..+|.++++
T Consensus       257 ~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~  287 (395)
T PF08596_consen  257 LCSSASVVPTISRNGGYCLVCLFNNGSIRIY  287 (395)
T ss_dssp             EEEEEEEEEEE-EEEEEEEEEEETTSEEEEE
T ss_pred             ccceEEEEeecccCCceEEEEEECCCcEEEE
Confidence            34444553     356678888899999983

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PHA03098 kelch-like protein; Provisional

Probab=86.56  E-value=32  Score=33.28  Aligned_cols=61  Identities=16%  Similarity=0.169  Sum_probs=30.2

Q ss_pred             EEEEEcCC-----CeEEEEECCCCeEEE--EeccCCCCEEEEEEecCCCEEEEEeCC------CCEEEEeCCCCee
Q psy4650          94 YLISGADD-----RLVKIWDYQNKTCVQ--TLEGHGQNISAVCFHPELPIVITGSED------GSVRVWHSGTHRL  156 (381)
Q Consensus        94 ~l~s~~~d-----~~v~vwd~~~~~~~~--~~~~~~~~v~~~~~~p~~~~l~s~~~d------~~i~vwd~~~~~~  156 (381)
                      .++.||.+     ..+..||..+..-..  .+...... .+++ .-++...+.||.+      ..+..||..+.+.
T Consensus       345 lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~-~~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W  418 (534)
T PHA03098        345 IYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYN-PCVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKW  418 (534)
T ss_pred             EEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCcc-ceEE-EECCEEEEECCcCCCCcccceEEEEeCCCCee
Confidence            55666654     346677776653211  11111111 1222 2355666666632      3577888876654

>KOG1916|consensus

Probab=86.28  E-value=0.84  Score=45.25  Aligned_cols=58  Identities=16%  Similarity=0.315  Sum_probs=41.2

Q ss_pred             EEEEEcCCCeEEEEECCCCeEEEEeccCCCCEEEE-----------EEecCCCEEEEEeCCCCEEEEeCC
Q psy4650          94 YLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAV-----------CFHPELPIVITGSEDGSVRVWHSG  152 (381)
Q Consensus        94 ~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~-----------~~~p~~~~l~s~~~d~~i~vwd~~  152 (381)
                      ++..+-.++.+++....+... ..+.+|..++..+           ..+|||..++..+.||.+++|...
T Consensus       197 ~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiy  265 (1283)
T KOG1916|consen  197 YICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIY  265 (1283)
T ss_pred             eeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeee
Confidence            677777888888766554322 3345576555433           368999999999999999998653

>PHA03098 kelch-like protein; Provisional

Probab=85.99  E-value=30  Score=33.56  Aligned_cols=62  Identities=11%  Similarity=0.125  Sum_probs=30.2

Q ss_pred             EEEEEcCC------CeEEEEECCCCeEEE--EeccCCCCEEEEEEecCCCEEEEEeCCC--------CEEEEeCCCCeee
Q psy4650          94 YLISGADD------RLVKIWDYQNKTCVQ--TLEGHGQNISAVCFHPELPIVITGSEDG--------SVRVWHSGTHRLE  157 (381)
Q Consensus        94 ~l~s~~~d------~~v~vwd~~~~~~~~--~~~~~~~~v~~~~~~p~~~~l~s~~~d~--------~i~vwd~~~~~~~  157 (381)
                      ..+.||.+      ..+..||..+..-..  .+...... .+. ...++...+.||.++        .+.+||..+.+..
T Consensus       392 iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~-~~~-~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~  469 (534)
T PHA03098        392 IYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYG-GCA-IYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWT  469 (534)
T ss_pred             EEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccC-ceE-EEECCEEEEECCccCCCCCcccceEEEecCCCCcee
Confidence            55556532      457788887654221  11111111 112 223455556665421        3778888776543

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=85.63  E-value=22  Score=30.54  Aligned_cols=107  Identities=16%  Similarity=0.175  Sum_probs=64.1

Q ss_pred             cEEEEEeeeCCCccEEEEEc--CCCeEEEEECCCCeEEEEeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEe-CCCCee
Q psy4650          80 GVNCVDYYHGGDKPYLISGA--DDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWH-SGTHRL  156 (381)
Q Consensus        80 ~v~~~~~~~~~~~~~l~s~~--~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd-~~~~~~  156 (381)
                      .+.+.++++++.. +.+...  ....+.++..  +....... ....+..-+|++++..++....+...+++. ...+..
T Consensus        25 ~~~s~AvS~dg~~-~A~v~~~~~~~~L~~~~~--~~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~  100 (253)
T PF10647_consen   25 DVTSPAVSPDGSR-VAAVSEGDGGRSLYVGPA--GGPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTG  100 (253)
T ss_pred             cccceEECCCCCe-EEEEEEcCCCCEEEEEcC--CCcceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcc
Confidence            6888999998873 222222  3334555443  33222221 223678889999988777766666777773 333332


Q ss_pred             e-EEEec--CCcceEEEEEcCCCCEEEEEe---CCCeEEE
Q psy4650         157 E-ISLTY--GLERVWTISSLKGSNNVAIGY---DEGSVLL  190 (381)
Q Consensus       157 ~-~~~~~--~~~~v~~v~~~~~~~~l~~~~---~dg~v~i  190 (381)
                      . .....  ....|..+.++|+|..++.-.   .++.+.+
T Consensus       101 ~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~v  140 (253)
T PF10647_consen  101 EPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYV  140 (253)
T ss_pred             eeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEE
Confidence            2 22221  122899999999999887765   3466655

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>KOG2247|consensus

Probab=85.51  E-value=0.12  Score=47.28  Aligned_cols=135  Identities=13%  Similarity=0.157  Sum_probs=87.1

Q ss_pred             eecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEE-Ee
Q psy4650          40 TTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQ-TL  118 (381)
Q Consensus        40 ~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~-~~  118 (381)
                      ...+.+.+ ++.+..+..+..||-.   .+....+ .-++....++|..+++. .++-+-..+.+.+||+.+..... .+
T Consensus        41 ~w~~e~~n-lavaca~tiv~~YD~a---gq~~le~-n~tg~aldm~wDkegdv-lavlAek~~piylwd~n~eytqqLE~  114 (615)
T KOG2247|consen   41 RWRPEGHN-LAVACANTIVIYYDKA---GQVILEL-NPTGKALDMAWDKEGDV-LAVLAEKTGPIYLWDVNSEYTQQLES  114 (615)
T ss_pred             eEecCCCc-eehhhhhhHHHhhhhh---cceeccc-CCchhHhhhhhccccch-hhhhhhcCCCeeechhhhhhHHHHhc
Confidence            34444455 4444556677788753   2211111 12455667788877763 55667778899999997653211 22


Q ss_pred             ccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEE
Q psy4650         119 EGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAI  181 (381)
Q Consensus       119 ~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~  181 (381)
                      .+ ...-.-+.|++..+.++.+...|.+.+++.++.+.....-.|.-++.+.++.+.+..+..
T Consensus       115 gg-~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vil~  176 (615)
T KOG2247|consen  115 GG-TSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVILC  176 (615)
T ss_pred             cC-cchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccceeeec
Confidence            22 112233789999998888888999999998877665555447778889999888755433

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=85.18  E-value=27  Score=31.06  Aligned_cols=70  Identities=10%  Similarity=0.088  Sum_probs=41.8

Q ss_pred             cEEEEEeeeCCCccEEEEEcCC----------CeEEEEECC-CCeEEEEeccCCCCEEEEEEecCCCEEEEEeC-CCCEE
Q psy4650          80 GVNCVDYYHGGDKPYLISGADD----------RLVKIWDYQ-NKTCVQTLEGHGQNISAVCFHPELPIVITGSE-DGSVR  147 (381)
Q Consensus        80 ~v~~~~~~~~~~~~~l~s~~~d----------~~v~vwd~~-~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~-d~~i~  147 (381)
                      ..+.+...|+|.   +..+...          ..-.+|-+. .+.....+.++-..-+.++|+|+++.+..... .+.|.
T Consensus       112 r~ND~~v~pdG~---~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~  188 (307)
T COG3386         112 RPNDGVVDPDGR---IWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIH  188 (307)
T ss_pred             CCCceeEcCCCC---EEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEE
Confidence            455677777766   3333222          111344444 45555555555555588999999987766644 57777


Q ss_pred             EEeCC
Q psy4650         148 VWHSG  152 (381)
Q Consensus       148 vwd~~  152 (381)
                      -|++.
T Consensus       189 r~~~d  193 (307)
T COG3386         189 RYDLD  193 (307)
T ss_pred             EEecC
Confidence            77765

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=84.75  E-value=12  Score=34.80  Aligned_cols=51  Identities=10%  Similarity=0.037  Sum_probs=41.1

Q ss_pred             EEeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEecCCcc
Q psy4650         116 QTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLER  166 (381)
Q Consensus       116 ~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~  166 (381)
                      ..+......+.++..+|.+.+.+....=|.|.++|+.++..++.+++.++.
T Consensus       301 ~~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdA  351 (415)
T PF14655_consen  301 FGLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDA  351 (415)
T ss_pred             EeeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccc
Confidence            334445556789999999998888888899999999999988888876553

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=84.25  E-value=33  Score=31.36  Aligned_cols=184  Identities=8%  Similarity=-0.063  Sum_probs=86.0

Q ss_pred             cCCCceEEEEEecCCeEEEecCCCccceeeEeecccc-ccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEEEecc
Q psy4650          42 NKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHE-KGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEG  120 (381)
Q Consensus        42 ~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~-~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~  120 (381)
                      .+++..+++.+..+|.-.+|.+.- ....+..|..+. ....+..++|++.  .++-......|+-.|+.+.+....+..
T Consensus        44 t~dG~kllF~s~~dg~~nly~lDL-~t~~i~QLTdg~g~~~~g~~~s~~~~--~~~Yv~~~~~l~~vdL~T~e~~~vy~~  120 (386)
T PF14583_consen   44 TDDGRKLLFASDFDGNRNLYLLDL-ATGEITQLTDGPGDNTFGGFLSPDDR--ALYYVKNGRSLRRVDLDTLEERVVYEV  120 (386)
T ss_dssp             -TTS-EEEEEE-TTSS-EEEEEET-TT-EEEE---SS-B-TTT-EE-TTSS--EEEEEETTTEEEEEETTT--EEEEEE-
T ss_pred             CCCCCEEEEEeccCCCcceEEEEc-ccCEEEECccCCCCCccceEEecCCC--eEEEEECCCeEEEEECCcCcEEEEEEC
Confidence            456677888888788666665433 233344444432 2222455566654  554454557888889999887666666


Q ss_pred             CCCCEEEEEEec--CCCEEEEEe---C-------------------CCCEEEEeCCCCeeeEEEecCCcceEEEEEcCCC
Q psy4650         121 HGQNISAVCFHP--ELPIVITGS---E-------------------DGSVRVWHSGTHRLEISLTYGLERVWTISSLKGS  176 (381)
Q Consensus       121 ~~~~v~~~~~~p--~~~~l~s~~---~-------------------d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~  176 (381)
                      ....+-...|..  ++..++..-   .                   ...|.-.|+.+|+....+. ....+..+.|+|..
T Consensus       121 p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~-~~~wlgH~~fsP~d  199 (386)
T PF14583_consen  121 PDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE-DTDWLGHVQFSPTD  199 (386)
T ss_dssp             -TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE-ESS-EEEEEEETTE
T ss_pred             CcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe-cCccccCcccCCCC
Confidence            666665566643  444443221   1                   1234445667776544444 44567788899876


Q ss_pred             CEEEEEeCCCe-----EEEEecCCCceEEEecCCCEEEEEecCceeecccccCCccccccCCceEEeeehH
Q psy4650         177 NNVAIGYDEGS-----VLLKVGREEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSVH  242 (381)
Q Consensus       177 ~~l~~~~~dg~-----v~i~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~  242 (381)
                      ..++.=|..|.     -++|.        .+.+ |.-.|.+.... .....+|..   |.|||..+.....
T Consensus       200 p~li~fCHEGpw~~Vd~RiW~--------i~~d-g~~~~~v~~~~-~~e~~gHEf---w~~DG~~i~y~~~  257 (386)
T PF14583_consen  200 PTLIMFCHEGPWDLVDQRIWT--------INTD-GSNVKKVHRRM-EGESVGHEF---WVPDGSTIWYDSY  257 (386)
T ss_dssp             EEEEEEEE-S-TTTSS-SEEE--------EETT-S---EESS----TTEEEEEEE---E-TTSS-EEEEEE
T ss_pred             CCEEEEeccCCcceeceEEEE--------EEcC-CCcceeeecCC-CCccccccc---ccCCCCEEEEEee
Confidence            55444333331     24443        4433 33344444332 233444543   5788888776543

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=84.22  E-value=16  Score=27.72  Aligned_cols=111  Identities=18%  Similarity=0.189  Sum_probs=63.2

Q ss_pred             CCccEEEEEcCCCeEEEEECCCC--------eEEEEeccCCCCEEEEEEec---C--CCEEEEEeCCCCEEEEeCCCCee
Q psy4650          90 GDKPYLISGADDRLVKIWDYQNK--------TCVQTLEGHGQNISAVCFHP---E--LPIVITGSEDGSVRVWHSGTHRL  156 (381)
Q Consensus        90 ~~~~~l~s~~~d~~v~vwd~~~~--------~~~~~~~~~~~~v~~~~~~p---~--~~~l~s~~~d~~i~vwd~~~~~~  156 (381)
                      |..+-|+++..-+.|.|++....        ..+..+. -...|++++-.|   +  ...|+.|+ ...+..||+....-
T Consensus         8 G~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt-~t~llaYDV~~N~d   85 (136)
T PF14781_consen    8 GVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVENNSD   85 (136)
T ss_pred             CCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEcccCch
Confidence            34346778888888888876533        2334443 345677776544   2  22566555 45799999986654


Q ss_pred             eEEEecCCcceEEEEEcCC---CCEEEEEeCCCeEEEEecCCCceEEEecCCCEEEEEec
Q psy4650         157 EISLTYGLERVWTISSLKG---SNNVAIGYDEGSVLLKVGREEPAVSMDVNGCKIIWARH  213 (381)
Q Consensus       157 ~~~~~~~~~~v~~v~~~~~---~~~l~~~~~dg~v~i~~~~~~~~~~~d~~~~~~~~~~~  213 (381)
                      +.... -.+.|.++.+-.-   ..-++..+.+-.+          .-||..+....|...
T Consensus        86 ~Fyke-~~DGvn~i~~g~~~~~~~~l~ivGGncsi----------~Gfd~~G~e~fWtVt  134 (136)
T PF14781_consen   86 LFYKE-VPDGVNAIVIGKLGDIPSPLVIVGGNCSI----------QGFDYEGNEIFWTVT  134 (136)
T ss_pred             hhhhh-CccceeEEEEEecCCCCCcEEEECceEEE----------EEeCCCCcEEEEEec
Confidence            43222 2356666665311   1122222223333          338888888899764

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=84.22  E-value=36  Score=31.72  Aligned_cols=145  Identities=10%  Similarity=0.052  Sum_probs=81.9

Q ss_pred             CCceEEEEEecCCeEEEecCCCccceeeEe--eccccccEEEEEee---eCCCccEEEEEcCCCeEEEEECCC-------
Q psy4650          44 DMIEYKISYQESSRVKAFNPIQVATLILKT--LYGHEKGVNCVDYY---HGGDKPYLISGADDRLVKIWDYQN-------  111 (381)
Q Consensus        44 ~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~--l~~h~~~v~~~~~~---~~~~~~~l~s~~~d~~v~vwd~~~-------  111 (381)
                      .+...++.|+..|.++||+|..........  -..-..+|..+..-   +..+...||. =--..+.+|.+..       
T Consensus        35 ~~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~  113 (418)
T PF14727_consen   35 SGSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEH  113 (418)
T ss_pred             CCccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCccc
Confidence            346688999999999999996533221111  11234688877643   2222222322 3345566665521       


Q ss_pred             Ce--EEEEeccCC--CCEEEEEEecCC-----CEEEEEeCCCCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEE
Q psy4650         112 KT--CVQTLEGHG--QNISAVCFHPEL-----PIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIG  182 (381)
Q Consensus       112 ~~--~~~~~~~~~--~~v~~~~~~p~~-----~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~  182 (381)
                      +.  .+..+..|.  .....+.+-|-|     ..+..-+.||.+.+++-+.-.....+.. .--.-.++|.+....++++
T Consensus       114 g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~tDsfvt~  192 (418)
T PF14727_consen  114 GNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRTDSFVTA  192 (418)
T ss_pred             CcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecCCEEEEe
Confidence            11  222333342  233444444422     2667778999999999876655444443 2233347777777777777


Q ss_pred             eCCCeEEE
Q psy4650         183 YDEGSVLL  190 (381)
Q Consensus       183 ~~dg~v~i  190 (381)
                      +.+..+..
T Consensus       193 sss~~l~~  200 (418)
T PF14727_consen  193 SSSWTLEC  200 (418)
T ss_pred             cCceeEEE
Confidence            76666555

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=83.47  E-value=5.8  Score=35.39  Aligned_cols=59  Identities=17%  Similarity=0.272  Sum_probs=42.8

Q ss_pred             eEEEEECCCCeEEEEeccCCCCEEEEEEecCCC-EEEEE-eCCCCEEEEeCCCCeeeEEEec
Q psy4650         103 LVKIWDYQNKTCVQTLEGHGQNISAVCFHPELP-IVITG-SEDGSVRVWHSGTHRLEISLTY  162 (381)
Q Consensus       103 ~v~vwd~~~~~~~~~~~~~~~~v~~~~~~p~~~-~l~s~-~~d~~i~vwd~~~~~~~~~~~~  162 (381)
                      .|-++|..+++.+..+.. ..++.+++.+.+.. +|.+. ..++.+.+||..+|+.+.++..
T Consensus       270 eVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~  330 (342)
T PF06433_consen  270 EVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ  330 (342)
T ss_dssp             EEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred             EEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence            466778899998888863 23677899998766 66544 4588999999999999988864

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=83.10  E-value=31  Score=30.13  Aligned_cols=114  Identities=10%  Similarity=0.113  Sum_probs=77.9

Q ss_pred             eccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEEEec--cCCCCEEEEEEecCCCEEEEEeCCCCEEEEeC
Q psy4650          74 LYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE--GHGQNISAVCFHPELPIVITGSEDGSVRVWHS  151 (381)
Q Consensus        74 l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~--~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~  151 (381)
                      +.|-+..+.++.|+|+..  .|.+......-.||-...|..++++.  +-. ....+.|..++.++++--.++.+.++.+
T Consensus        81 i~g~~~nvS~LTynp~~r--tLFav~n~p~~iVElt~~GdlirtiPL~g~~-DpE~Ieyig~n~fvi~dER~~~l~~~~v  157 (316)
T COG3204          81 ILGETANVSSLTYNPDTR--TLFAVTNKPAAIVELTKEGDLIRTIPLTGFS-DPETIEYIGGNQFVIVDERDRALYLFTV  157 (316)
T ss_pred             cccccccccceeeCCCcc--eEEEecCCCceEEEEecCCceEEEecccccC-ChhHeEEecCCEEEEEehhcceEEEEEE
Confidence            456667799999999765  67777777777777777788777763  222 2356777777777777777888888877


Q ss_pred             CCCeeeEEE----------ecCCcceEEEEEcCCCCEEEEEeCCCeEEE
Q psy4650         152 GTHRLEISL----------TYGLERVWTISSLKGSNNVAIGYDEGSVLL  190 (381)
Q Consensus       152 ~~~~~~~~~----------~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i  190 (381)
                      .....+...          .........++|.|....|..+-.-..+.+
T Consensus       158 d~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I  206 (316)
T COG3204         158 DADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGI  206 (316)
T ss_pred             cCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEE
Confidence            655332221          112445678899998877777766666665

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=82.86  E-value=20  Score=32.67  Aligned_cols=94  Identities=14%  Similarity=0.076  Sum_probs=50.5

Q ss_pred             EeeeCCCccEEEEEcCCC--eEEEEECCCCeEEEEeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEec
Q psy4650          85 DYYHGGDKPYLISGADDR--LVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTY  162 (381)
Q Consensus        85 ~~~~~~~~~~l~s~~~d~--~v~vwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~  162 (381)
                      +|.++|.+ +|..+..||  .+.+.|+.+++..+.-.+.........++|+.+.+........|+-.|+.+.+....+..
T Consensus        42 ~ft~dG~k-llF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~  120 (386)
T PF14583_consen   42 CFTDDGRK-LLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEV  120 (386)
T ss_dssp             -B-TTS-E-EEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE-
T ss_pred             CcCCCCCE-EEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEEC
Confidence            56777774 555555555  566678898886665554333333566678888877766677899999999876555555


Q ss_pred             CCcceEEEEEc--CCCCEE
Q psy4650         163 GLERVWTISSL--KGSNNV  179 (381)
Q Consensus       163 ~~~~v~~v~~~--~~~~~l  179 (381)
                      ....+-...|.  .++..+
T Consensus       121 p~~~~g~gt~v~n~d~t~~  139 (386)
T PF14583_consen  121 PDDWKGYGTWVANSDCTKL  139 (386)
T ss_dssp             -TTEEEEEEEEE-TTSSEE
T ss_pred             CcccccccceeeCCCccEE
Confidence            55555445554  334443

>PRK15080 ethanolamine utilization protein EutJ; Provisional

Probab=82.77  E-value=2.4  Score=36.83  Aligned_cols=53  Identities=6%  Similarity=-0.011  Sum_probs=45.4

Q ss_pred             hHHHHHHHHHHhhhhhhhhHhhhccccceeeEeeccccCcceEEeecHHHHHHHHHHHHHH
Q psy4650         297 RARFESLIGGLLTSFVQPCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIGGLLTS  357 (381)
Q Consensus       297 r~~fe~l~~~l~~~~~~~~~~~Ls~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~  357 (381)
                      +.++++++.++++++.+.+++.|...        .+...++.||..+.|.+.+++++.|+.
T Consensus       195 ~~~~~~ii~~~~~~i~~~i~~~l~~~--------~~~~IvLtGG~s~lpgl~e~l~~~lg~  247 (267)
T PRK15080        195 HKEIFPVVKPVVEKMASIVARHIEGQ--------DVEDIYLVGGTCCLPGFEEVFEKQTGL  247 (267)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcC--------CCCEEEEECCcccchhHHHHHHHHhCC
Confidence            57789999999999999999999752        235667889999999999999999974

>PRK13930 rod shape-determining protein MreB; Provisional

Probab=82.34  E-value=6.9  Score=35.24  Aligned_cols=63  Identities=14%  Similarity=0.171  Sum_probs=44.2

Q ss_pred             hhhhhhHhhhccccce----eeEee--ccccCcceEEeecHHHHHHHHHHHHHHhHHHHHHHHHhCCCC
Q psy4650         310 SFVQPCMHVLSTLQSS----NVFVE--SLYDGLDFHHNVSRARFESLIGGLLTSFVQPIEDVLSRSNIT  372 (381)
Q Consensus       310 ~~~~~~~~~Ls~~~~~----~~~~~--~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~l~~~~~~  372 (381)
                      ..++.+|+.++.....    .+.+.  ++..+......+++++|++++.+.+.++.+.+.++|+.++.+
T Consensus       206 ~~ae~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~e~i~~~~~~i~~~i~~~l~~~~~~  274 (335)
T PRK13930        206 RTAEEIKIEIGSAYPLDEEESMEVRGRDLVTGLPKTIEISSEEVREALAEPLQQIVEAVKSVLEKTPPE  274 (335)
T ss_pred             HHHHHHHHHhhcCcCCCCCceEEEECccCCCCCCeeEEECHHHHHHHHHHHHHHHHHHHHHHHHhCCHH
Confidence            4567777777654321    12222  222334456789999999999999999999999999987643

>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)

Probab=82.18  E-value=26  Score=31.06  Aligned_cols=84  Identities=12%  Similarity=0.073  Sum_probs=56.7

Q ss_pred             EEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEecCCcce-----EEEEEcCCCCEEEEEeCCCeEEEEec------
Q psy4650         125 ISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERV-----WTISSLKGSNNVAIGYDEGSVLLKVG------  193 (381)
Q Consensus       125 v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v-----~~v~~~~~~~~l~~~~~dg~v~i~~~------  193 (381)
                      +.++...++|.+|+|+-.-..|.+.|-.+|+.++.+.+....=     ...++-++-+.+-.+..++.+.+++.      
T Consensus       146 iNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~~~~~~~IslFDN~~~~~~  225 (299)
T PF14269_consen  146 INSVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQHDARFLNESNDDGTISLFDNANSDFN  225 (299)
T ss_pred             eeeeeecCCccEEEEecccCEEEEEECCCCcEEEEeCCCCCCcccccCCcEeeccCCEEeccCCCCCEEEEEcCCCCCCC
Confidence            5677777888999999888899999999999999887652211     11333334444444566788888765      


Q ss_pred             ----CCCceEEEecCCCEE
Q psy4650         194 ----REEPAVSMDVNGCKI  208 (381)
Q Consensus       194 ----~~~~~~~~d~~~~~~  208 (381)
                          ....++.+|..+...
T Consensus       226 ~~~~s~~~v~~ld~~~~~~  244 (299)
T PF14269_consen  226 GTEPSRGLVLELDPETMTV  244 (299)
T ss_pred             CCcCCCceEEEEECCCCEE
Confidence                234566777765543

>PHA02790 Kelch-like protein; Provisional

Probab=82.10  E-value=48  Score=31.65  Aligned_cols=105  Identities=12%  Similarity=0.010  Sum_probs=48.3

Q ss_pred             eEEEEEecC-----CeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCC--CeEEEEECCCCeEE--EE
Q psy4650          47 EYKISYQES-----SRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADD--RLVKIWDYQNKTCV--QT  117 (381)
Q Consensus        47 ~~~~s~~~d-----~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d--~~v~vwd~~~~~~~--~~  117 (381)
                      .+.+.|+.+     .++..||+....-..+..+....... +++ ..++.  ..+.||.+  .++..||..++.-.  ..
T Consensus       273 ~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~-~~v-~~~~~--iYviGG~~~~~sve~ydp~~n~W~~~~~  348 (480)
T PHA02790        273 VVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYA-SGV-PANNK--LYVVGGLPNPTSVERWFHGDAAWVNMPS  348 (480)
T ss_pred             EEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcc-eEE-EECCE--EEEECCcCCCCceEEEECCCCeEEECCC
Confidence            344555543     25677888653322222222111111 222 22333  55666653  35777887654321  12


Q ss_pred             eccCCCCEEEEEEecCCCEEEEEeCCC---CEEEEeCCCCeee
Q psy4650         118 LEGHGQNISAVCFHPELPIVITGSEDG---SVRVWHSGTHRLE  157 (381)
Q Consensus       118 ~~~~~~~v~~~~~~p~~~~l~s~~~d~---~i~vwd~~~~~~~  157 (381)
                      +...... .++ ..-+|...+.||.++   .+..||..+.+..
T Consensus       349 l~~~r~~-~~~-~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~  389 (480)
T PHA02790        349 LLKPRCN-PAV-ASINNVIYVIGGHSETDTTTEYLLPNHDQWQ  389 (480)
T ss_pred             CCCCCcc-cEE-EEECCEEEEecCcCCCCccEEEEeCCCCEEE
Confidence            2211111 111 123566667776543   4667887766543

>PF01011 PQQ: PQQ enzyme repeat family

Probab=82.04  E-value=3.7  Score=23.27  Aligned_cols=28  Identities=21%  Similarity=0.494  Sum_probs=20.8

Q ss_pred             EEEEeCCCeEEEEecCCCceEEEecCCCEEEEEecCce
Q psy4650         179 VAIGYDEGSVLLKVGREEPAVSMDVNGCKIIWARHSEV  216 (381)
Q Consensus       179 l~~~~~dg~v~i~~~~~~~~~~~d~~~~~~~~~~~~~~  216 (381)
                      +.+++.+|.+.-          +|.++|+.+|......
T Consensus         3 v~~~~~~g~l~A----------lD~~TG~~~W~~~~~~   30 (38)
T PF01011_consen    3 VYVGTPDGYLYA----------LDAKTGKVLWKFQTGP   30 (38)
T ss_dssp             EEEETTTSEEEE----------EETTTTSEEEEEESSS
T ss_pred             EEEeCCCCEEEE----------EECCCCCEEEeeeCCC
Confidence            344466777766          9999999999986543

; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=82.04  E-value=33  Score=29.69  Aligned_cols=135  Identities=12%  Similarity=0.093  Sum_probs=77.2

Q ss_pred             ceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEEE--------
Q psy4650          46 IEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQT--------  117 (381)
Q Consensus        46 ~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~--------  117 (381)
                      ...++.|..+| +.+|+... ........  +...|..+...|.-+  .++.- .|+.+.++++........        
T Consensus         7 ~~~L~vGt~~G-l~~~~~~~-~~~~~~i~--~~~~I~ql~vl~~~~--~llvL-sd~~l~~~~L~~l~~~~~~~~~~~~~   79 (275)
T PF00780_consen    7 GDRLLVGTEDG-LYVYDLSD-PSKPTRIL--KLSSITQLSVLPELN--LLLVL-SDGQLYVYDLDSLEPVSTSAPLAFPK   79 (275)
T ss_pred             CCEEEEEECCC-EEEEEecC-CccceeEe--ecceEEEEEEecccC--EEEEE-cCCccEEEEchhhccccccccccccc
Confidence            34566677777 88888722 12222221  233499999988655  34333 359999999876433221        


Q ss_pred             ------eccCCCCEEEEE--EecCCCEEEEEeCCCCEEEEeCCCC-----eeeEEEecCCcceEEEEEcCCCCEEEEEeC
Q psy4650         118 ------LEGHGQNISAVC--FHPELPIVITGSEDGSVRVWHSGTH-----RLEISLTYGLERVWTISSLKGSNNVAIGYD  184 (381)
Q Consensus       118 ------~~~~~~~v~~~~--~~p~~~~l~s~~~d~~i~vwd~~~~-----~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~  184 (381)
                            .......+...+  -.+.+...+.....+.|.+|.....     .....+. -...+.+++|.  ++.++.|..
T Consensus        80 ~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~--~~~i~v~~~  156 (275)
T PF00780_consen   80 SRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFL--GNKICVGTS  156 (275)
T ss_pred             cccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEe--CCEEEEEeC
Confidence                  111223444444  1123333344444558888877653     3444444 34778889998  567777777


Q ss_pred             CCeEEE
Q psy4650         185 EGSVLL  190 (381)
Q Consensus       185 dg~v~i  190 (381)
                      ++...+
T Consensus       157 ~~f~~i  162 (275)
T PF00780_consen  157 KGFYLI  162 (275)
T ss_pred             CceEEE
Confidence            776654

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=81.61  E-value=42  Score=30.67  Aligned_cols=151  Identities=14%  Similarity=0.113  Sum_probs=78.8

Q ss_pred             EEEEecCCeEEEecCCCccceeeEee--ccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEEEeccCCC-CE
Q psy4650          49 KISYQESSRVKAFNPIQVATLILKTL--YGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQ-NI  125 (381)
Q Consensus        49 ~~s~~~d~~v~i~~~~~~~~~~~~~l--~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~-~v  125 (381)
                      ++.+..+|.+.-+|+....  .+...  .+....+.+-.+..+|.   +..++.++.+...|..+|..+........ .+
T Consensus        71 v~~~~~~G~i~A~d~~~g~--~~W~~~~~~~~~~~~~~~~~~~G~---i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~  145 (370)
T COG1520          71 VYVGTRDGNIFALNPDTGL--VKWSYPLLGAVAQLSGPILGSDGK---IYVGSWDGKLYALDASTGTLVWSRNVGGSPYY  145 (370)
T ss_pred             EEEecCCCcEEEEeCCCCc--EEecccCcCcceeccCceEEeCCe---EEEecccceEEEEECCCCcEEEEEecCCCeEE
Confidence            3444666666667765422  11211  11112233333333443   88888999999999988988887776551 11


Q ss_pred             EEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCCCeEEEEecC-CCceEEEecC
Q psy4650         126 SAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKVGR-EEPAVSMDVN  204 (381)
Q Consensus       126 ~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~~~-~~~~~~~d~~  204 (381)
                      ..-..-.++ .+..++.++.+.-.|..+|+..+....... +   .....+...   ..++.+.+-... +..+.-+|..
T Consensus       146 ~~~~v~~~~-~v~~~s~~g~~~al~~~tG~~~W~~~~~~~-~---~~~~~~~~~---~~~~~vy~~~~~~~~~~~a~~~~  217 (370)
T COG1520         146 ASPPVVGDG-TVYVGTDDGHLYALNADTGTLKWTYETPAP-L---SLSIYGSPA---IASGTVYVGSDGYDGILYALNAE  217 (370)
T ss_pred             ecCcEEcCc-EEEEecCCCeEEEEEccCCcEEEEEecCCc-c---ccccccCce---eecceEEEecCCCcceEEEEEcc
Confidence            111111122 333344678899999998988877654321 1   011111111   122222221111 2234558888


Q ss_pred             CCEEEEEe
Q psy4650         205 GCKIIWAR  212 (381)
Q Consensus       205 ~~~~~~~~  212 (381)
                      +|...|..
T Consensus       218 ~G~~~w~~  225 (370)
T COG1520         218 DGTLKWSQ  225 (370)
T ss_pred             CCcEeeee
Confidence            99999984

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=81.50  E-value=27  Score=29.31  Aligned_cols=61  Identities=16%  Similarity=0.296  Sum_probs=41.2

Q ss_pred             EEEEEcCCCeEEEEECCCCeEEEEe-------c-------cCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCe
Q psy4650          94 YLISGADDRLVKIWDYQNKTCVQTL-------E-------GHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHR  155 (381)
Q Consensus        94 ~l~s~~~d~~v~vwd~~~~~~~~~~-------~-------~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~  155 (381)
                      ++..-..+|.+++||+.+++....-       .       .....|..+..+.+|.-+++-+ +|....|+..-+.
T Consensus        24 ~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L~~   98 (219)
T PF07569_consen   24 YLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDLGC   98 (219)
T ss_pred             EEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEeccccce
Confidence            7888899999999999988653321       1       2345677777777776555544 4566777665443

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>KOG1916|consensus

Probab=80.96  E-value=2.9  Score=41.76  Aligned_cols=106  Identities=12%  Similarity=0.166  Sum_probs=60.7

Q ss_pred             eEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEE-----------eeeCCCccEEEEEcCCCeEEEEECC-----
Q psy4650          47 EYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVD-----------YYHGGDKPYLISGADDRLVKIWDYQ-----  110 (381)
Q Consensus        47 ~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~-----------~~~~~~~~~l~s~~~d~~v~vwd~~-----  110 (381)
                      .|+..+-+++++++.+...-.   ..-+.+|...+..++           .+|||.  .++.+..||.++.|.+-     
T Consensus       196 ~~ic~~~~~~~i~lL~~~ra~---~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGt--v~a~a~~dG~v~f~Qiyi~g~~  270 (1283)
T KOG1916|consen  196 VYICYGLKGGEIRLLNINRAL---RSLFRSHSQRVTDMAFFAEGVLKLASLSPDGT--VFAWAISDGSVGFYQIYITGKI  270 (1283)
T ss_pred             ceeeeccCCCceeEeeechHH---HHHHHhcCCCcccHHHHhhchhhheeeCCCCc--EEEEeecCCccceeeeeeeccc
Confidence            355556666777766653211   133456776666554           567776  77888888888777642     


Q ss_pred             CCeEEEEeccCC-CCEEEEEEecCCC---------EEEEEeC-CCCEEEEeCCCCeee
Q psy4650         111 NKTCVQTLEGHG-QNISAVCFHPELP---------IVITGSE-DGSVRVWHSGTHRLE  157 (381)
Q Consensus       111 ~~~~~~~~~~~~-~~v~~~~~~p~~~---------~l~s~~~-d~~i~vwd~~~~~~~  157 (381)
                      ...++...+.|. .+-.|.-++....         +++++.. +.-+++|.....+++
T Consensus       271 ~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl  328 (1283)
T KOG1916|consen  271 VHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL  328 (1283)
T ss_pred             cHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence            223455566676 3444444443211         3344433 667888887666655

>PRK10115 protease 2; Provisional

Probab=80.89  E-value=25  Score=35.34  Aligned_cols=71  Identities=6%  Similarity=-0.047  Sum_probs=44.0

Q ss_pred             cEEEEEeeeCCCccEEEEE-cC----CCeEEEEECCCCeEEEEeccCCCCEEEEEEecCCCEEEEEeCC------CCEEE
Q psy4650          80 GVNCVDYYHGGDKPYLISG-AD----DRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPIVITGSED------GSVRV  148 (381)
Q Consensus        80 ~v~~~~~~~~~~~~~l~s~-~~----d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d------~~i~v  148 (381)
                      .+..+.|+|++.  +|+-+ +.    ...+++-|+.++..+...-....  ..++|.+++..++.+..+      ..|..
T Consensus       128 ~l~~~~~Spdg~--~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~  203 (686)
T PRK10115        128 TLGGMAITPDNT--IMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWR  203 (686)
T ss_pred             EEeEEEECCCCC--EEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEE
Confidence            466778899877  45432 23    33577888887753222111111  569999999866554332      36777


Q ss_pred             EeCCCC
Q psy4650         149 WHSGTH  154 (381)
Q Consensus       149 wd~~~~  154 (381)
                      +++.++
T Consensus       204 h~lgt~  209 (686)
T PRK10115        204 HTIGTP  209 (686)
T ss_pred             EECCCC
Confidence            888877

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=80.65  E-value=46  Score=30.46  Aligned_cols=145  Identities=8%  Similarity=0.102  Sum_probs=72.9

Q ss_pred             hcceeeeecCCCceEEEEE----------ecCC-eEEEecCCCccce--eeEeeccccccEEEEEeeeCCCccEEEEEcC
Q psy4650          34 ETKVDITTNKDMIEYKISY----------QESS-RVKAFNPIQVATL--ILKTLYGHEKGVNCVDYYHGGDKPYLISGAD  100 (381)
Q Consensus        34 ~~~~~i~~~~~~~~~~~s~----------~~d~-~v~i~~~~~~~~~--~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~  100 (381)
                      ..|..+...+++.-+++..          ...+ .|.+++.......  ....+.........+++.+++   ++++ +.
T Consensus        14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G---lyV~-~~   89 (367)
T TIGR02604        14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG---VYVA-TP   89 (367)
T ss_pred             CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC---EEEe-CC
Confidence            4567788887755454432          1223 6766654321111  122332333456788887755   3443 33


Q ss_pred             CCeEEEEECCCC-----e--EE-EEecc----CCCCEEEEEEecCCCEEEEEeCC-------------------CCEEEE
Q psy4650         101 DRLVKIWDYQNK-----T--CV-QTLEG----HGQNISAVCFHPELPIVITGSED-------------------GSVRVW  149 (381)
Q Consensus       101 d~~v~vwd~~~~-----~--~~-~~~~~----~~~~v~~~~~~p~~~~l~s~~~d-------------------~~i~vw  149 (381)
                      ....++.|....     +  .+ ..+..    +......+.|.|+|.+.++-+..                   +.+.-+
T Consensus        90 ~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~  169 (367)
T TIGR02604        90 PDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRY  169 (367)
T ss_pred             CeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEE
Confidence            433334444321     1  11 12222    12346789999999865544421                   334455


Q ss_pred             eCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEe
Q psy4650         150 HSGTHRLEISLTYGLERVWTISSLKGSNNVAIGY  183 (381)
Q Consensus       150 d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~  183 (381)
                      |..++... .+.........++|+|+|.++++-.
T Consensus       170 ~pdg~~~e-~~a~G~rnp~Gl~~d~~G~l~~tdn  202 (367)
T TIGR02604       170 NPDGGKLR-VVAHGFQNPYGHSVDSWGDVFFCDN  202 (367)
T ss_pred             ecCCCeEE-EEecCcCCCccceECCCCCEEEEcc
Confidence            55544432 2222223356788888887765543

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>smart00564 PQQ beta-propeller repeat

Probab=80.28  E-value=5  Score=21.57  Aligned_cols=25  Identities=24%  Similarity=0.630  Sum_probs=18.9

Q ss_pred             EEEEEeCCCeEEEEecCCCceEEEecCCCEEEEEe
Q psy4650         178 NVAIGYDEGSVLLKVGREEPAVSMDVNGCKIIWAR  212 (381)
Q Consensus       178 ~l~~~~~dg~v~i~~~~~~~~~~~d~~~~~~~~~~  212 (381)
                      .+..++.+|.+..          +|..+|+.+|..
T Consensus         8 ~v~~~~~~g~l~a----------~d~~~G~~~W~~   32 (33)
T smart00564        8 TVYVGSTDGTLYA----------LDAKTGEILWTY   32 (33)
T ss_pred             EEEEEcCCCEEEE----------EEcccCcEEEEc
Confidence            4556666777766          999999999974

Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.

>PHA02790 Kelch-like protein; Provisional

Probab=80.23  E-value=56  Score=31.21  Aligned_cols=59  Identities=5%  Similarity=0.012  Sum_probs=28.8

Q ss_pred             EEEEEcCCC---eEEEEECCCCeEEE--EeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeee
Q psy4650          94 YLISGADDR---LVKIWDYQNKTCVQ--TLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLE  157 (381)
Q Consensus        94 ~l~s~~~d~---~v~vwd~~~~~~~~--~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~  157 (381)
                      ..+.||.++   ++..||..+..-..  ........ .++ ..-++...+.|+   .+.+||..+.+..
T Consensus       365 IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~-~~~-~~~~~~IYv~GG---~~e~ydp~~~~W~  428 (480)
T PHA02790        365 IYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYK-SCA-LVFGRRLFLVGR---NAEFYCESSNTWT  428 (480)
T ss_pred             EEEecCcCCCCccEEEEeCCCCEEEeCCCCCCcccc-ceE-EEECCEEEEECC---ceEEecCCCCcEe
Confidence            556666543   46678876653221  11111111 111 123455555553   5678888776543

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=80.07  E-value=8.9  Score=21.89  Aligned_cols=31  Identities=16%  Similarity=0.248  Sum_probs=22.4

Q ss_pred             cCCCEEEEE-eCCCCEEEEeCCCCeeeEEEec
Q psy4650         132 PELPIVITG-SEDGSVRVWHSGTHRLEISLTY  162 (381)
Q Consensus       132 p~~~~l~s~-~~d~~i~vwd~~~~~~~~~~~~  162 (381)
                      |+++.+..+ -.++.|.++|..+++.+..+..
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v   32 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV   32 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence            466655544 4578999999988887777664

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	381
3mkq_A	814	Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco		4e-38
2ynp_A	604	Yeast Betaprime Cop 1-604 With Ktktn Motif Length =		6e-38
2yno_A	310	Yeast Betaprime Cop 1-304h6 Length = 310		2e-34
2ynn_A	304	Yeast Betaprime Cop 1-304 With Ktktn Motif Length =		2e-34
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		2e-14
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		3e-08
3gl1_A	387	Crystal Structure Of Atpase Domain Of Ssb1 Chaperon		1e-11
3gl1_A	387	Crystal Structure Of Atpase Domain Of Ssb1 Chaperon		4e-08
2gnq_A	336	Structure Of Wdr5 Length = 336		8e-11
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		8e-11
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		8e-11
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		8e-11
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		8e-11
2h9l_A	329	Wdr5delta23 Length = 329		8e-11
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		8e-11
2g99_A	308	Structural Basis For The Specific Recognition Of Me		8e-11
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		9e-11
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		9e-11
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		9e-11
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		9e-11
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		9e-11
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		1e-10
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		1e-10
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		1e-10
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		1e-10
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		2e-10
1s3x_A	382	The Crystal Structure Of The Human Hsp70 Atpase Dom		3e-10
3d2f_B	382	Crystal Structure Of A Complex Of Sse1p And Hsp70 L		3e-10
1hjo_A	380	Atpase Domain Of Human Heat Shock 70kda Protein 1 L		3e-10
3a8y_A	392	Crystal Structure Of The Complex Between The Bag5 B		3e-10
3jxu_A	409	Crystal Structure Of The Human 70kda Heat Shock Pro		3e-10
2e8a_A	391	Crystal Structure Of The Human Hsp70 Atpase Domain		3e-10
2e88_A	391	Crystal Structure Of The Human Hsp70 Atpase Domain		3e-10
3gdq_A	408	Crystal Structure Of The Human 70kda Heat Shock Pro		4e-10
3gdq_A	408	Crystal Structure Of The Human 70kda Heat Shock Pro		5e-06
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		7e-10
2v7z_A	543	Crystal Structure Of The 70-Kda Heat Shock Cognate		8e-10
2v7z_A	543	Crystal Structure Of The 70-Kda Heat Shock Cognate		6e-06
1yuw_A	554	Crystal Structure Of Bovine Hsc70(Aa1-554)e213aD214		8e-10
1yuw_A	554	Crystal Structure Of Bovine Hsc70(Aa1-554)e213aD214		6e-06
3c7n_B	554	Structure Of The Hsp110:hsc70 Nucleotide Exchange C		8e-10
3c7n_B	554	Structure Of The Hsp110:hsc70 Nucleotide Exchange C		6e-06
3d2e_B	382	Crystal Structure Of A Complex Of Sse1p And Hsp70,		1e-09
3d2e_B	382	Crystal Structure Of A Complex Of Sse1p And Hsp70,		8e-06
3mks_B	464	Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH		1e-09
1ba1_A	386	Heat-Shock Cognate 70kd Protein 44kd Atpase N-Termi		1e-09
1ba1_A	386	Heat-Shock Cognate 70kd Protein 44kd Atpase N-Termi		8e-06
1nex_B	464	Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp		1e-09
1ngd_A	386	Structural Basis Of The 70-kilodalton Heat Shock Co		1e-09
1ngd_A	386	Structural Basis Of The 70-kilodalton Heat Shock Co		8e-06
1ngf_A	386	Structural Basis Of The 70-Kilodalton Heat Shock Co		1e-09
1ngf_A	386	Structural Basis Of The 70-Kilodalton Heat Shock Co		8e-06
1hpm_A	386	How Potassium Affects The Activity Of The Molecular		1e-09
1hpm_A	386	How Potassium Affects The Activity Of The Molecular		8e-06
1ngh_A	386	Structural Basis Of The 70-Kilodalton Heat Shock Co		1e-09
1ngh_A	386	Structural Basis Of The 70-Kilodalton Heat Shock Co		8e-06
1ats_A	386	Threonine 204 Of The Chaperone Protein Hsc70 Influe		1e-09
1ats_A	386	Threonine 204 Of The Chaperone Protein Hsc70 Influe		8e-06
1ba0_A	386	Heat-Shock Cognate 70kd Protein 44kd Atpase N-Termi		1e-09
1ba0_A	386	Heat-Shock Cognate 70kd Protein 44kd Atpase N-Termi		8e-06
1ngg_A	386	Structural Basis Of The 70-Kilodalton Heat Shock Co		1e-09
1ngg_A	386	Structural Basis Of The 70-Kilodalton Heat Shock Co		8e-06
1ngb_A	386	Structural Basis Of The 70-Kilodalton Heat Shock Co		1e-09
1ngb_A	386	Structural Basis Of The 70-Kilodalton Heat Shock Co		8e-06
1ngc_A	386	Structural Basis Of The 70-Kilodalton Heat Shock Co		1e-09
1ngc_A	386	Structural Basis Of The 70-Kilodalton Heat Shock Co		8e-06
1nge_A	386	Structural Basis Of The 70-Kilodalton Heat Shock Co		1e-09
1nge_A	386	Structural Basis Of The 70-Kilodalton Heat Shock Co		8e-06
1bup_A	386	T13s Mutant Of Bovine 70 Kilodalton Heat Shock Prot		1e-09
1bup_A	386	T13s Mutant Of Bovine 70 Kilodalton Heat Shock Prot		8e-06
1nga_A	386	Structural Basis Of The 70-Kilodalton Heat Shock Co		1e-09
1nga_A	386	Structural Basis Of The 70-Kilodalton Heat Shock Co		8e-06
1kaz_A	381	70kd Heat Shock Cognate Protein Atpase Domain, K71e		1e-09
1kaz_A	381	70kd Heat Shock Cognate Protein Atpase Domain, K71e		8e-06
1hx1_A	400	Crystal Structure Of A Bag Domain In Complex With T		1e-09
1hx1_A	400	Crystal Structure Of A Bag Domain In Complex With T		9e-06
1kax_A	381	70kd Heat Shock Cognate Protein Atpase Domain, K71m		1e-09
1kax_A	381	70kd Heat Shock Cognate Protein Atpase Domain, K71m		8e-06
1atr_A	386	Threonine 204 Of The Chaperone Protein Hsc70 Influe		1e-09
1atr_A	386	Threonine 204 Of The Chaperone Protein Hsc70 Influe		8e-06
1kay_A	381	70kd Heat Shock Cognate Protein Atpase Domain, K71a		1e-09
1kay_A	381	70kd Heat Shock Cognate Protein Atpase Domain, K71a		9e-06
3fzf_A	381	Crystal Structure Of Hsc70BAG1 IN COMPLEX WITH ATP		1e-09
3fzf_A	381	Crystal Structure Of Hsc70BAG1 IN COMPLEX WITH ATP		9e-06
3cqx_A	386	Chaperone Complex Length = 386		1e-09
3cqx_A	386	Chaperone Complex Length = 386		8e-06
2bup_A	381	T13g Mutant Of The Atpase Fragment Of Bovine Hsc70		1e-09
2bup_A	381	T13g Mutant Of The Atpase Fragment Of Bovine Hsc70		8e-06
2qw9_B	394	Crystal Structure Of Bovine Hsc70 (1-394aa)in The A		2e-09
2qw9_B	394	Crystal Structure Of Bovine Hsc70 (1-394aa)in The A		9e-06
1qqo_A	378	E175s Mutant Of Bovine 70 Kilodalton Heat Shock Pro		2e-09
1qqo_A	378	E175s Mutant Of Bovine 70 Kilodalton Heat Shock Pro		9e-06
2qwn_A	394	Crystal Structure Of Disulfide-Bond-Crosslinked Com		2e-09
2qwn_A	394	Crystal Structure Of Disulfide-Bond-Crosslinked Com		9e-06
1xqs_C	191	Crystal Structure Of The Hspbp1 Core Domain Complex		3e-09
1xqs_C	191	Crystal Structure Of The Hspbp1 Core Domain Complex		1e-05
2ovp_B	445	Structure Of The Skp1-Fbw7 Complex Length = 445		3e-09
4fsv_A	387	Crystal Structure Of A Heat Shock 70kda Protein 2 (		4e-09
4fsv_A	387	Crystal Structure Of A Heat Shock 70kda Protein 2 (		5e-06
3i33_A	404	Crystal Structure Of The Human 70kda Heat Shock Pro		5e-09
3i33_A	404	Crystal Structure Of The Human 70kda Heat Shock Pro		6e-06
1qqm_A	378	D199s Mutant Of Bovine 70 Kilodalton Heat Shock Pro		9e-09
1qqm_A	378	D199s Mutant Of Bovine 70 Kilodalton Heat Shock Pro		9e-06
1p22_A	435	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		2e-08
3qfp_A	390	Crystal Structure Of Yeast Hsp70 (BipKAR2) ATPASE D		2e-08
3qfu_A	394	Crystal Structure Of Yeast Hsp70 (BipKAR2) COMPLEXE		3e-08
3ldl_A	384	Crystal Structure Of Human Grp78 (70kda Heat Shock		5e-08
3ldl_A	384	Crystal Structure Of Human Grp78 (70kda Heat Shock		2e-05
3iuc_A	408	Crystal Structure Of The Human 70kda Heat Shock Pro		5e-08
3iuc_A	408	Crystal Structure Of The Human 70kda Heat Shock Pro		2e-05
1qqn_A	378	D206s Mutant Of Bovine 70 Kilodalton Heat Shock Pro		8e-08
1qqn_A	378	D206s Mutant Of Bovine 70 Kilodalton Heat Shock Pro		9e-06
3fe1_A	403	Crystal Structure Of The Human 70kda Heat Shock Pro		8e-08
3fe1_A	403	Crystal Structure Of The Human 70kda Heat Shock Pro		1e-05
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		9e-08
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		9e-08
3sn6_B	351	Crystal Structure Of The Beta2 Adrenergic Receptor-		1e-07
1got_B	340	Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer		1e-07
1a0r_B	340	Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-		1e-07
1gg2_B	340	G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet		1e-07
2bcj_B	340	Crystal Structure Of G Protein-coupled Receptor Kin		1e-07
2pbi_B	354	The Multifunctional Nature Of Gbeta5RGS9 REVEALED F		4e-07
3zey_7	318	High-resolution Cryo-electron Microscopy Structure		4e-07
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		4e-07
3dm0_A	694	Maltose Binding Protein Fusion With Rack1 From A. T		1e-06
3kvg_A	400	Crystal Structure Of The N-Terminal Domain Of Hsp70		4e-06
3kvg_A	400	Crystal Structure Of The N-Terminal Domain Of Hsp70		5e-04
3ow8_A	321	Crystal Structure Of The Wd Repeat-Containing Prote		8e-06
3ow8_A	321	Crystal Structure Of The Wd Repeat-Containing Prote		3e-04
4gni_A	409	Structure Of The Ssz1 Atpase Bound To Atp And Magne		1e-05
2hes_X	330	Cytosolic Iron-sulphur Assembly Protein- 1 Length =		5e-05
2zkq_a	317	Structure Of A Mammalian Ribosomal 40s Subunit With		1e-04
4aow_A	340	Crystal Structure Of The Human Rack1 Protein At A R		1e-04
2qxl_A	658	Crystal Structure Analysis Of Sse1, A Yeast Hsp110		2e-04
3c7n_A	668	Structure Of The Hsp110:hsc70 Nucleotide Exchange C		2e-04
3d2e_A	675	Crystal Structure Of A Complex Of Sse1p And Hsp70,		2e-04
3d2f_A	675	Crystal Structure Of A Complex Of Sse1p And Hsp70 L		2e-04
2xzm_R	343	Crystal Structure Of The Eukaryotic 40s Ribosomal S		4e-04
3bg0_A	316	Architecture Of A Coat For The Nuclear Pore Membran		7e-04
3iz6_a	380	Localization Of The Small Subunit Ribosomal Protein		7e-04
3izb_a	319	Localization Of The Small Subunit Ribosomal Protein		7e-04
3rfg_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		7e-04
3rfh_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		8e-04
1trj_A	314	Homology Model Of Yeast Rack1 Protein Fitted Into 1		8e-04
3jyv_R	313	Structure Of The 40s Rrna And Proteins And PE TRNA		8e-04

>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814

Iteration: 1
 Score =  155 bits (392), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 70/150 (46%), Positives = 103/150 (68%), Gaps = 3/150 (2%)
Query: 76  GHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELP 135
           G E+GVN VDYY   DKPY+I+ +DD  +KIWDYQ K+CV TLEGH  N+S   FHP LP
Sbjct: 182 GQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLP 241
Query: 136 IVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISS--LKGSNNVAIGYDEGSVLLKVG 193
           I+I+GSEDG++++W+S T+++E +L  GLER W I++      N +A G+D G  +L +G
Sbjct: 242 IIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLG 301
Query: 194 REEPAVSMDVNGCKIIWARHSEVQQANLKT 223
            +EP +S+D  G K++W+       +++ T
Sbjct: 302 NDEPTLSLDPVG-KLVWSGGKNAAASDIFT 330

>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604

Iteration: 1
 Score =  154 bits (390), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 70/150 (46%), Positives = 103/150 (68%), Gaps = 3/150 (2%)
Query: 76  GHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELP 135
           G E+GVN VDYY   DKPY+I+ +DD  +KIWDYQ K+CV TLEGH  N+S   FHP LP
Sbjct: 182 GQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLP 241
Query: 136 IVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISS--LKGSNNVAIGYDEGSVLLKVG 193
           I+I+GSEDG++++W+S T+++E +L  GLER W I++      N +A G+D G  +L +G
Sbjct: 242 IIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLG 301
Query: 194 REEPAVSMDVNGCKIIWARHSEVQQANLKT 223
            +EP +S+D  G K++W+       +++ T
Sbjct: 302 NDEPTLSLDPVG-KLVWSGGKNAAASDIFT 330

>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310

Iteration: 1
 Score =  142 bits (359), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 63/123 (51%), Positives = 88/123 (71%), Gaps = 2/123 (1%)
Query: 76  GHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELP 135
           G E+GVN VDYY   DKPY+I+ +DD  +KIWDYQ K+CV TLEGH  N+S   FHP LP
Sbjct: 182 GQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLP 241
Query: 136 IVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISS--LKGSNNVAIGYDEGSVLLKVG 193
           I+I+GSEDG++++W+S T+++E +L  GLER W I++      N +A G+D G  +L +G
Sbjct: 242 IIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLG 301
Query: 194 REE 196
            +E
Sbjct: 302 NDE 304

>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304

Iteration: 1
 Score =  142 bits (359), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 63/123 (51%), Positives = 88/123 (71%), Gaps = 2/123 (1%)
Query: 76  GHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELP 135
           G E+GVN VDYY   DKPY+I+ +DD  +KIWDYQ K+CV TLEGH  N+S   FHP LP
Sbjct: 182 GQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLP 241
Query: 136 IVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISS--LKGSNNVAIGYDEGSVLLKVG 193
           I+I+GSEDG++++W+S T+++E +L  GLER W I++      N +A G+D G  +L +G
Sbjct: 242 IIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLG 301
Query: 194 REE 196
            +E
Sbjct: 302 NDE 304

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 77.0 bits (188), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 38/95 (40%), Positives = 60/95 (63%), Gaps = 3/95 (3%)
Query: 56  SRVKAFNPIQVAT-LILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTC 114
           SR K      V+T + L TL GH+  V  V ++ GG   +++S ADD+ +++WDY+NK C
Sbjct: 315 SRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGK--FILSCADDKTLRVWDYKNKRC 372
Query: 115 VQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVW 149
           ++TL  H   ++++ FH   P V+TGS D +V+VW
Sbjct: 373 MKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 407

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 36/127 (28%), Positives = 63/127 (49%), Gaps = 2/127 (1%)
Query: 71  LKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCF 130
           ++T++GH+  V+ V     GD  +++S + D+ +K+W+ Q   CV+T  GH + +  V  
Sbjct: 185 IRTMHGHDHNVSSVSIMPNGD--HIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRP 242
Query: 131 HPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLL 190
           + +  ++ + S D +VRVW   T   +  L      V  IS    S+  +I    GS   
Sbjct: 243 NQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETK 302
Query: 191 KVGREEP 197
           K G+  P
Sbjct: 303 KSGKPGP 309

>pdb|3GL1|A Chain A, Crystal Structure Of Atpase Domain Of Ssb1 Chaperone, A Member Of The Hsp70 Family, From Saccharomyces Cerevisiae Length = 387

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 33/74 (44%), Positives = 46/74 (62%)
Query: 246 KYRLDISDSHRSVAKLRAAAETCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIG 305
           K  LDISD  R++ +LR AAE     LS++  + V V+SL+DG DF  +++RARFE L  
Sbjct: 254 KTGLDISDDARALRRLRTAAERAKRTLSSVTQTTVEVDSLFDGEDFESSLTRARFEDLNA 313
Query: 306 GLLTSFVQPCMHVL 319
            L  S ++P   VL
Sbjct: 314 ALFKSTLEPVEQVL 327

>pdb|3GL1|A Chain A, Crystal Structure Of Atpase Domain Of Ssb1 Chaperone, A Member Of The Hsp70 Family, From Saccharomyces Cerevisiae Length = 387

Iteration: 1
 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 43/71 (60%)
Query: 308 LTSFVQPCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIGGLLTSFVQPIEDVLS 367
           L +  +     LS++  + V V+SL+DG DF  +++RARFE L   L  S ++P+E VL 
Sbjct: 269 LRTAAERAKRTLSSVTQTTVEVDSLFDGEDFESSLTRARFEDLNAALFKSTLEPVEQVLK 328
Query: 368 RSNITHDQINK 378
            + I+  QI++
Sbjct: 329 DAKISKSQIDE 339

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 64.7 bits (156), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 51/84 (60%), Gaps = 2/84 (2%)
Query: 72  KTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFH 131
           KT+ GH+ G++  D     D   L+S +DD+ +KIWD  +  C++TL+GH   +    F+
Sbjct: 83  KTISGHKLGIS--DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN 140
Query: 132 PELPIVITGSEDGSVRVWHSGTHR 155
           P+  ++++GS D SVR+W   T +
Sbjct: 141 PQSNLIVSGSFDESVRIWDVKTGK 164

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 64.7 bits (156), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 51/84 (60%), Gaps = 2/84 (2%)
Query: 72  KTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFH 131
           KT+ GH+ G++  D     D   L+S +DD+ +KIWD  +  C++TL+GH   +    F+
Sbjct: 81  KTISGHKLGIS--DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN 138
Query: 132 PELPIVITGSEDGSVRVWHSGTHR 155
           P+  ++++GS D SVR+W   T +
Sbjct: 139 PQSNLIVSGSFDESVRIWDVKTGK 162

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 48/83 (57%), Gaps = 2/83 (2%)
Query: 71  LKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCF 130
           LKTL GH   V C ++    +   ++SG+ D  V+IWD +   C++TL  H   +SAV F
Sbjct: 103 LKTLKGHSNYVFCCNFNPQSN--LIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHF 160
Query: 131 HPELPIVITGSEDGSVRVWHSGT 153
           + +  ++++ S DG  R+W + +
Sbjct: 161 NRDGSLIVSSSYDGLCRIWDTAS 183

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 64.7 bits (156), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 51/84 (60%), Gaps = 2/84 (2%)
Query: 72  KTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFH 131
           KT+ GH+ G++  D     D   L+S +DD+ +KIWD  +  C++TL+GH   +    F+
Sbjct: 59  KTISGHKLGIS--DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN 116
Query: 132 PELPIVITGSEDGSVRVWHSGTHR 155
           P+  ++++GS D SVR+W   T +
Sbjct: 117 PQSNLIVSGSFDESVRIWDVKTGK 140

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 48/83 (57%), Gaps = 2/83 (2%)
Query: 71  LKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCF 130
           LKTL GH   V C ++    +   ++SG+ D  V+IWD +   C++TL  H   +SAV F
Sbjct: 103 LKTLKGHSNYVFCCNFNPQSN--LIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHF 160
Query: 131 HPELPIVITGSEDGSVRVWHSGT 153
           + +  ++++ S DG  R+W + +
Sbjct: 161 NRDGSLIVSSSYDGLCRIWDTAS 183

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 64.7 bits (156), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 51/84 (60%), Gaps = 2/84 (2%)
Query: 72  KTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFH 131
           KT+ GH+ G++  D     D   L+S +DD+ +KIWD  +  C++TL+GH   +    F+
Sbjct: 76  KTISGHKLGIS--DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN 133
Query: 132 PELPIVITGSEDGSVRVWHSGTHR 155
           P+  ++++GS D SVR+W   T +
Sbjct: 134 PQSNLIVSGSFDESVRIWDVKTGK 157

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 64.7 bits (156), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 51/84 (60%), Gaps = 2/84 (2%)
Query: 72  KTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFH 131
           KT+ GH+ G++  D     D   L+S +DD+ +KIWD  +  C++TL+GH   +    F+
Sbjct: 65  KTISGHKLGIS--DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN 122
Query: 132 PELPIVITGSEDGSVRVWHSGTHR 155
           P+  ++++GS D SVR+W   T +
Sbjct: 123 PQSNLIVSGSFDESVRIWDVKTGK 146

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 64.7 bits (156), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 51/84 (60%), Gaps = 2/84 (2%)
Query: 72  KTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFH 131
           KT+ GH+ G++  D     D   L+S +DD+ +KIWD  +  C++TL+GH   +    F+
Sbjct: 55  KTISGHKLGIS--DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN 112
Query: 132 PELPIVITGSEDGSVRVWHSGTHR 155
           P+  ++++GS D SVR+W   T +
Sbjct: 113 PQSNLIVSGSFDESVRIWDVKTGK 136

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 64.7 bits (156), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 51/84 (60%), Gaps = 2/84 (2%)
Query: 72  KTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFH 131
           KT+ GH+ G++  D     D   L+S +DD+ +KIWD  +  C++TL+GH   +    F+
Sbjct: 64  KTISGHKLGIS--DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN 121
Query: 132 PELPIVITGSEDGSVRVWHSGTHR 155
           P+  ++++GS D SVR+W   T +
Sbjct: 122 PQSNLIVSGSFDESVRIWDVKTGK 145

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 64.7 bits (156), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 51/84 (60%), Gaps = 2/84 (2%)
Query: 72  KTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFH 131
           KT+ GH+ G++  D     D   L+S +DD+ +KIWD  +  C++TL+GH   +    F+
Sbjct: 62  KTISGHKLGIS--DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN 119
Query: 132 PELPIVITGSEDGSVRVWHSGTHR 155
           P+  ++++GS D SVR+W   T +
Sbjct: 120 PQSNLIVSGSFDESVRIWDVKTGK 143

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 64.7 bits (156), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 51/84 (60%), Gaps = 2/84 (2%)
Query: 72  KTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFH 131
           KT+ GH+ G++  D     D   L+S +DD+ +KIWD  +  C++TL+GH   +    F+
Sbjct: 60  KTISGHKLGIS--DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN 117
Query: 132 PELPIVITGSEDGSVRVWHSGTHR 155
           P+  ++++GS D SVR+W   T +
Sbjct: 118 PQSNLIVSGSFDESVRIWDVKTGK 141

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 64.7 bits (156), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 51/84 (60%), Gaps = 2/84 (2%)
Query: 72  KTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFH 131
           KT+ GH+ G++  D     D   L+S +DD+ +KIWD  +  C++TL+GH   +    F+
Sbjct: 59  KTISGHKLGIS--DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN 116
Query: 132 PELPIVITGSEDGSVRVWHSGTHR 155
           P+  ++++GS D SVR+W   T +
Sbjct: 117 PQSNLIVSGSFDESVRIWDVKTGK 140

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 64.3 bits (155), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 51/84 (60%), Gaps = 2/84 (2%)
Query: 72  KTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFH 131
           KT+ GH+ G++  D     D   L+S +DD+ +KIWD  +  C++TL+GH   +    F+
Sbjct: 65  KTISGHKLGIS--DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN 122
Query: 132 PELPIVITGSEDGSVRVWHSGTHR 155
           P+  ++++GS D SVR+W   T +
Sbjct: 123 PQSNLIVSGSFDESVRIWDVKTGK 146

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 51/84 (60%), Gaps = 2/84 (2%)
Query: 72  KTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFH 131
           KT+ GH+ G++  D     D   L+S +DD+ +KIWD  +  C++TL+GH   +    F+
Sbjct: 62  KTISGHKLGIS--DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN 119
Query: 132 PELPIVITGSEDGSVRVWHSGTHR 155
           P+  ++++GS D SVR+W   T +
Sbjct: 120 PQSNLIVSGSFDESVRIWDVKTGK 143

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 51/84 (60%), Gaps = 2/84 (2%)
Query: 72  KTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFH 131
           KT+ GH+ G++  D     D   L+S +DD+ +KIWD  +  C++TL+GH   +    F+
Sbjct: 62  KTISGHKLGIS--DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN 119
Query: 132 PELPIVITGSEDGSVRVWHSGTHR 155
           P+  ++++GS D SVR+W   T +
Sbjct: 120 PQSNLIVSGSFDESVRIWDVKTGK 143

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 51/84 (60%), Gaps = 2/84 (2%)
Query: 72  KTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFH 131
           KT+ GH+ G++  D     D   L+S +DD+ +KIWD  +  C++TL+GH   +    F+
Sbjct: 58  KTISGHKLGIS--DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN 115
Query: 132 PELPIVITGSEDGSVRVWHSGTHR 155
           P+  ++++GS D SVR+W   T +
Sbjct: 116 PQSNLIVSGSFDESVRIWDVKTGK 139

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 51/84 (60%), Gaps = 2/84 (2%)
Query: 72  KTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFH 131
           KT+ GH+ G++  D     D   L+S +DD+ +KIWD  +  C++TL+GH   +    F+
Sbjct: 65  KTISGHKLGIS--DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN 122
Query: 132 PELPIVITGSEDGSVRVWHSGTHR 155
           P+  ++++GS D SVR+W   T +
Sbjct: 123 PQSNLIVSGSFDESVRIWDVKTGK 146

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 37/121 (30%), Positives = 64/121 (52%), Gaps = 4/121 (3%)
Query: 70  ILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVC 129
           +L+TL GH   VN V +    D   + S +DD+ VK+W+ +N   +QTL GH  ++  V 
Sbjct: 254 LLQTLTGHSSSVNGVAFRP--DGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVA 310
Query: 130 FHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVL 189
           F P+   + + S+D +V++W+     L+ +LT     VW ++       +A   D+ +V 
Sbjct: 311 FSPDGQTIASASDDKTVKLWNRNGQHLQ-TLTGHSSSVWGVAFSPDGQTIASASDDKTVK 369
Query: 190 L 190
           L
Sbjct: 370 L 370

>pdb|1S3X|A Chain A, The Crystal Structure Of The Human Hsp70 Atpase Domain Length = 382

Iteration: 1
 Score = 62.8 bits (151), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 72/319 (22%), Positives = 141/319 (44%), Gaps = 53/319 (16%)
Query: 1   KSRLISQAKNTIIKNKRALNTELTETDIETIVRETKVDITTNKDMIEYKISYQESSRVKA 60
           K+++    +NT+   KR +  +  +  +++ ++     +  + D  + ++SY+     KA
Sbjct: 56  KNQVALNPQNTVFDAKRLIGRKFGDPVVQSDMKHWPFQVINDGDKPKVQVSYK--GETKA 113
Query: 61  FNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEG 120
           F P ++++++L  +          + Y G    Y ++ A   ++ +  Y N +  Q  + 
Sbjct: 114 FYPEEISSMVLTKMK------EIAEAYLG----YPVTNA---VITVPAYFNDSQRQATKD 160
Query: 121 HGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVA 180
            G              VI G     +R+ +  T     ++ YGL+R       KG  NV 
Sbjct: 161 AG--------------VIAGLN--VLRIINEPT---AAAIAYGLDRTG-----KGERNVL 196
Query: 181 IGYDEGSVLLKVGREEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLS 240
           I +D G     V      +++D +G   + A   +          E F+N    +V    
Sbjct: 197 I-FDLGGGTFDVS----ILTID-DGIFEVKATAGDTHLGG-----EDFDN---RLVNHFV 242
Query: 241 VHVTIKYRLDISDSHRSVAKLRAAAETCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARF 300
                K++ DIS + R+V +LR A E     LS+   +++ ++SL++G+DF+ +++RARF
Sbjct: 243 EEFKRKHKKDISQNKRAVRRLRTACERAKRTLSSSTQASLEIDSLFEGIDFYTSITRARF 302
Query: 301 ESLIGGLLTSFVQPCMHVL 319
           E L   L  S ++P    L
Sbjct: 303 EELCSDLFRSTLEPVEKAL 321

>pdb|3D2F|B Chain B, Crystal Structure Of A Complex Of Sse1p And Hsp70 Length = 382

Iteration: 1
 Score = 62.8 bits (151), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 72/319 (22%), Positives = 141/319 (44%), Gaps = 53/319 (16%)
Query: 1   KSRLISQAKNTIIKNKRALNTELTETDIETIVRETKVDITTNKDMIEYKISYQESSRVKA 60
           K+++    +NT+   KR +  +  +  +++ ++     +  + D  + ++SY+     KA
Sbjct: 56  KNQVALNPQNTVFDAKRLIGRKFGDPVVQSDMKHWPFQVINDGDKPKVQVSYK--GETKA 113
Query: 61  FNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEG 120
           F P ++++++L  +          + Y G    Y ++ A   ++ +  Y N +  Q  + 
Sbjct: 114 FYPEEISSMVLTKMK------EIAEAYLG----YPVTNA---VITVPAYFNDSQRQATKD 160
Query: 121 HGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVA 180
            G              VI G     +R+ +  T     ++ YGL+R       KG  NV 
Sbjct: 161 AG--------------VIAGLN--VLRIINEPT---AAAIAYGLDRTG-----KGERNVL 196
Query: 181 IGYDEGSVLLKVGREEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLS 240
           I +D G     V      +++D +G   + A   +          E F+N    +V    
Sbjct: 197 I-FDLGGGTFDVS----ILTID-DGIFEVKATAGDTHLGG-----EDFDN---RLVNHFV 242
Query: 241 VHVTIKYRLDISDSHRSVAKLRAAAETCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARF 300
                K++ DIS + R+V +LR A E     LS+   +++ ++SL++G+DF+ +++RARF
Sbjct: 243 EEFKRKHKKDISQNKRAVRRLRTACERAKRTLSSSTQASLEIDSLFEGIDFYTSITRARF 302
Query: 301 ESLIGGLLTSFVQPCMHVL 319
           E L   L  S ++P    L
Sbjct: 303 EELCSDLFRSTLEPVEKAL 321

>pdb|1HJO|A Chain A, Atpase Domain Of Human Heat Shock 70kda Protein 1 Length = 380

Iteration: 1
 Score = 62.8 bits (151), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 72/319 (22%), Positives = 141/319 (44%), Gaps = 53/319 (16%)
Query: 1   KSRLISQAKNTIIKNKRALNTELTETDIETIVRETKVDITTNKDMIEYKISYQESSRVKA 60
           K+++    +NT+   KR +  +  +  +++ ++     +  + D  + ++SY+     KA
Sbjct: 54  KNQVALNPQNTVFDAKRLIGRKFGDPVVQSDMKHWPFQVINDGDKPKVQVSYK--GETKA 111
Query: 61  FNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEG 120
           F P ++++++L  +          + Y G    Y ++ A   ++ +  Y N +  Q  + 
Sbjct: 112 FYPEEISSMVLTKMK------EIAEAYLG----YPVTNA---VITVPAYFNDSQRQATKD 158
Query: 121 HGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVA 180
            G              VI G     +R+ +  T     ++ YGL+R       KG  NV 
Sbjct: 159 AG--------------VIAGLN--VLRIINEPT---AAAIAYGLDRTG-----KGERNVL 194
Query: 181 IGYDEGSVLLKVGREEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLS 240
           I +D G     V      +++D +G   + A   +          E F+N    +V    
Sbjct: 195 I-FDLGGGTFDVS----ILTID-DGIFEVKATAGDTHLGG-----EDFDN---RLVNHFV 240
Query: 241 VHVTIKYRLDISDSHRSVAKLRAAAETCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARF 300
                K++ DIS + R+V +LR A E     LS+   +++ ++SL++G+DF+ +++RARF
Sbjct: 241 EEFKRKHKKDISQNKRAVRRLRTACERAKRTLSSSTQASLEIDSLFEGIDFYTSITRARF 300
Query: 301 ESLIGGLLTSFVQPCMHVL 319
           E L   L  S ++P    L
Sbjct: 301 EELCSDLFRSTLEPVEKAL 319

>pdb|3A8Y|A Chain A, Crystal Structure Of The Complex Between The Bag5 Bd5 And Hsp70 Nbd Length = 392

Iteration: 1
 Score = 62.8 bits (151), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 72/319 (22%), Positives = 141/319 (44%), Gaps = 53/319 (16%)
Query: 1   KSRLISQAKNTIIKNKRALNTELTETDIETIVRETKVDITTNKDMIEYKISYQESSRVKA 60
           K+++    +NT+   KR +  +  +  +++ ++     +  + D  + ++SY+     KA
Sbjct: 60  KNQVALNPQNTVFDAKRLIGRKFGDPVVQSDMKHWPFQVINDGDKPKVQVSYK--GETKA 117
Query: 61  FNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEG 120
           F P ++++++L  +          + Y G    Y ++ A   ++ +  Y N +  Q  + 
Sbjct: 118 FYPEEISSMVLTKMK------EIAEAYLG----YPVTNA---VITVPAYFNDSQRQATKD 164
Query: 121 HGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVA 180
            G              VI G     +R+ +  T     ++ YGL+R       KG  NV 
Sbjct: 165 AG--------------VIAGLN--VLRIINEPT---AAAIAYGLDRTG-----KGERNVL 200
Query: 181 IGYDEGSVLLKVGREEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLS 240
           I +D G     V      +++D +G   + A   +          E F+N    +V    
Sbjct: 201 I-FDLGGGTFDVS----ILTID-DGIFEVKATAGDTHLGG-----EDFDN---RLVNHFV 246
Query: 241 VHVTIKYRLDISDSHRSVAKLRAAAETCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARF 300
                K++ DIS + R+V +LR A E     LS+   +++ ++SL++G+DF+ +++RARF
Sbjct: 247 EEFKRKHKKDISQNKRAVRRLRTACERAKRTLSSSTQASLEIDSLFEGIDFYTSITRARF 306
Query: 301 ESLIGGLLTSFVQPCMHVL 319
           E L   L  S ++P    L
Sbjct: 307 EELCSDLFRSTLEPVEKAL 325

>pdb|3JXU|A Chain A, Crystal Structure Of The Human 70kda Heat Shock Protein 1a (Hsp70-1) Atpase Domain In Complex With Adp And Inorganic Phosphate Length = 409

Iteration: 1
 Score = 62.8 bits (151), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 72/319 (22%), Positives = 141/319 (44%), Gaps = 53/319 (16%)
Query: 1   KSRLISQAKNTIIKNKRALNTELTETDIETIVRETKVDITTNKDMIEYKISYQESSRVKA 60
           K+++    +NT+   KR +  +  +  +++ ++     +  + D  + ++SY+     KA
Sbjct: 78  KNQVALNPQNTVFDAKRLIGRKFGDPVVQSDMKHWPFQVINDGDKPKVQVSYK--GETKA 135
Query: 61  FNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEG 120
           F P ++++++L  +          + Y G    Y ++ A   ++ +  Y N +  Q  + 
Sbjct: 136 FYPEEISSMVLTKMK------EIAEAYLG----YPVTNA---VITVPAYFNDSQRQATKD 182
Query: 121 HGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVA 180
            G              VI G     +R+ +  T     ++ YGL+R       KG  NV 
Sbjct: 183 AG--------------VIAGLN--VLRIINEPT---AAAIAYGLDRTG-----KGERNVL 218
Query: 181 IGYDEGSVLLKVGREEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLS 240
           I +D G     V      +++D +G   + A   +          E F+N    +V    
Sbjct: 219 I-FDLGGGTFDVS----ILTID-DGIFEVKATAGDTHLGG-----EDFDN---RLVNHFV 264
Query: 241 VHVTIKYRLDISDSHRSVAKLRAAAETCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARF 300
                K++ DIS + R+V +LR A E     LS+   +++ ++SL++G+DF+ +++RARF
Sbjct: 265 EEFKRKHKKDISQNKRAVRRLRTACERAKRTLSSSTQASLEIDSLFEGIDFYTSITRARF 324
Query: 301 ESLIGGLLTSFVQPCMHVL 319
           E L   L  S ++P    L
Sbjct: 325 EELCSDLFRSTLEPVEKAL 343

>pdb|2E8A|A Chain A, Crystal Structure Of The Human Hsp70 Atpase Domain In Complex With Amp-Pnp Length = 391

Iteration: 1
 Score = 62.8 bits (151), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 72/319 (22%), Positives = 141/319 (44%), Gaps = 53/319 (16%)
Query: 1   KSRLISQAKNTIIKNKRALNTELTETDIETIVRETKVDITTNKDMIEYKISYQESSRVKA 60
           K+++    +NT+   KR +  +  +  +++ ++     +  + D  + ++SY+     KA
Sbjct: 59  KNQVALNPQNTVFDAKRLIGRKFGDPVVQSDMKHWPFQVINDGDKPKVQVSYK--GETKA 116
Query: 61  FNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEG 120
           F P ++++++L  +          + Y G    Y ++ A   ++ +  Y N +  Q  + 
Sbjct: 117 FYPEEISSMVLTKMK------EIAEAYLG----YPVTNA---VITVPAYFNDSQRQATKD 163
Query: 121 HGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVA 180
            G              VI G     +R+ +  T     ++ YGL+R       KG  NV 
Sbjct: 164 AG--------------VIAGLN--VLRIINEPT---AAAIAYGLDRTG-----KGERNVL 199
Query: 181 IGYDEGSVLLKVGREEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLS 240
           I +D G     V      +++D +G   + A   +          E F+N    +V    
Sbjct: 200 I-FDLGGGTFDVS----ILTID-DGIFEVKATAGDTHLGG-----EDFDN---RLVNHFV 245
Query: 241 VHVTIKYRLDISDSHRSVAKLRAAAETCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARF 300
                K++ DIS + R+V +LR A E     LS+   +++ ++SL++G+DF+ +++RARF
Sbjct: 246 EEFKRKHKKDISQNKRAVRRLRTACERAKRTLSSSTQASLEIDSLFEGIDFYTSITRARF 305
Query: 301 ESLIGGLLTSFVQPCMHVL 319
           E L   L  S ++P    L
Sbjct: 306 EELCSDLFRSTLEPVEKAL 324

>pdb|2E88|A Chain A, Crystal Structure Of The Human Hsp70 Atpase Domain In The Apo Form Length = 391

Iteration: 1
 Score = 62.8 bits (151), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 72/319 (22%), Positives = 141/319 (44%), Gaps = 53/319 (16%)
Query: 1   KSRLISQAKNTIIKNKRALNTELTETDIETIVRETKVDITTNKDMIEYKISYQESSRVKA 60
           K+++    +NT+   KR +  +  +  +++ ++     +  + D  + ++SY+     KA
Sbjct: 59  KNQVALNPQNTVFDAKRLIGRKFGDPVVQSDMKHWPFQVINDGDKPKVQVSYK--GETKA 116
Query: 61  FNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEG 120
           F P ++++++L  +          + Y G    Y ++ A   ++ +  Y N +  Q  + 
Sbjct: 117 FYPEEISSMVLTKMK------EIAEAYLG----YPVTNA---VITVPAYFNDSQRQATKD 163
Query: 121 HGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVA 180
            G              VI G     +R+ +  T     ++ YGL+R       KG  NV 
Sbjct: 164 AG--------------VIAGLN--VLRIINEPT---AAAIAYGLDRTG-----KGERNVL 199
Query: 181 IGYDEGSVLLKVGREEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLS 240
           I +D G     V      +++D +G   + A   +          E F+N    +V    
Sbjct: 200 I-FDLGGGTFDVS----ILTID-DGIFEVKATAGDTHLGG-----EDFDN---RLVNHFV 245
Query: 241 VHVTIKYRLDISDSHRSVAKLRAAAETCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARF 300
                K++ DIS + R+V +LR A E     LS+   +++ ++SL++G+DF+ +++RARF
Sbjct: 246 EEFKRKHKKDISQNKRAVRRLRTACERAKRTLSSSTQASLEIDSLFEGIDFYTSITRARF 305
Query: 301 ESLIGGLLTSFVQPCMHVL 319
           E L   L  S ++P    L
Sbjct: 306 EELCSDLFRSTLEPVEKAL 324

>pdb|3GDQ|A Chain A, Crystal Structure Of The Human 70kda Heat Shock Protein 1-Like Atpase Domain In Complex With Adp And Inorganic Phosphate Length = 408

Iteration: 1
 Score = 62.4 bits (150), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 28/74 (37%), Positives = 46/74 (62%)
Query: 246 KYRLDISDSHRSVAKLRAAAETCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIG 305
           K++ DIS + R+V +LR A E     LS+   +N+ ++SLY+G+DF+ +++RARFE L  
Sbjct: 272 KHKKDISQNKRAVRRLRTACERAKRTLSSSTQANLEIDSLYEGIDFYTSITRARFEELCA 331
Query: 306 GLLTSFVQPCMHVL 319
            L    ++P    L
Sbjct: 332 DLFRGTLEPVEKAL 345

>pdb|3GDQ|A Chain A, Crystal Structure Of The Human 70kda Heat Shock Protein 1-Like Atpase Domain In Complex With Adp And Inorganic Phosphate Length = 408

Iteration: 1
 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 38/65 (58%), Gaps = 3/65 (4%)
Query: 315 CMHVLSTLQSS---NVFVESLYDGLDFHHNVSRARFESLIGGLLTSFVQPIEDVLSRSNI 371
           C     TL SS   N+ ++SLY+G+DF+ +++RARFE L   L    ++P+E  L  + +
Sbjct: 291 CERAKRTLSSSTQANLEIDSLYEGIDFYTSITRARFEELCADLFRGTLEPVEKALRDAKM 350
Query: 372 THDQI 376
              +I
Sbjct: 351 DKAKI 355

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 61.6 bits (148), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 47/71 (66%)
Query: 91  DKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWH 150
           D  +L +GA+DRL++IWD +N+  V  L+GH Q+I ++ + P    +++GS D +VR+W 
Sbjct: 134 DGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWD 193
Query: 151 SGTHRLEISLT 161
             T +  ++L+
Sbjct: 194 LRTGQCSLTLS 204

>pdb|2V7Z|A Chain A, Crystal Structure Of The 70-Kda Heat Shock Cognate Protein From Rattus Norvegicus In Post-Atp Hydrolysis State Length = 543

Iteration: 1
 Score = 61.6 bits (148), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 27/74 (36%), Positives = 46/74 (62%)
Query: 246 KYRLDISDSHRSVAKLRAAAETCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIG 305
           K++ DIS++ R+V +LR A E     LS+   +++ ++SLY+G+DF+ +++RARFE L  
Sbjct: 248 KHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNA 307
Query: 306 GLLTSFVQPCMHVL 319
            L    + P    L
Sbjct: 308 DLFRGTLDPVEKAL 321

>pdb|2V7Z|A Chain A, Crystal Structure Of The 70-Kda Heat Shock Cognate Protein From Rattus Norvegicus In Post-Atp Hydrolysis State Length = 543

Iteration: 1
 Score = 48.5 bits (114), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 315 CMHVLSTLQSS---NVFVESLYDGLDFHHNVSRARFESLIGGLLTSFVQPIEDVLSRSNI 371
           C     TL SS   ++ ++SLY+G+DF+ +++RARFE L   L    + P+E  L  + +
Sbjct: 267 CERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRGTLDPVEKALRDAKL 326
Query: 372 THDQI 376
              QI
Sbjct: 327 DKSQI 331

>pdb|1YUW|A Chain A, Crystal Structure Of Bovine Hsc70(Aa1-554)e213aD214A MUTANT Length = 554

Iteration: 1
 Score = 61.2 bits (147), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 27/74 (36%), Positives = 46/74 (62%)
Query: 246 KYRLDISDSHRSVAKLRAAAETCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIG 305
           K++ DIS++ R+V +LR A E     LS+   +++ ++SLY+G+DF+ +++RARFE L  
Sbjct: 248 KHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNA 307
Query: 306 GLLTSFVQPCMHVL 319
            L    + P    L
Sbjct: 308 DLFRGTLDPVEKAL 321

>pdb|1YUW|A Chain A, Crystal Structure Of Bovine Hsc70(Aa1-554)e213aD214A MUTANT Length = 554

Iteration: 1
 Score = 48.5 bits (114), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 315 CMHVLSTLQSS---NVFVESLYDGLDFHHNVSRARFESLIGGLLTSFVQPIEDVLSRSNI 371
           C     TL SS   ++ ++SLY+G+DF+ +++RARFE L   L    + P+E  L  + +
Sbjct: 267 CERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRGTLDPVEKALRDAKL 326
Query: 372 THDQI 376
              QI
Sbjct: 327 DKSQI 331

>pdb|3C7N|B Chain B, Structure Of The Hsp110:hsc70 Nucleotide Exchange Complex Length = 554

Iteration: 1
 Score = 61.2 bits (147), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 27/74 (36%), Positives = 46/74 (62%)
Query: 246 KYRLDISDSHRSVAKLRAAAETCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIG 305
           K++ DIS++ R+V +LR A E     LS+   +++ ++SLY+G+DF+ +++RARFE L  
Sbjct: 248 KHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNA 307
Query: 306 GLLTSFVQPCMHVL 319
            L    + P    L
Sbjct: 308 DLFRGTLDPVEKAL 321

>pdb|3C7N|B Chain B, Structure Of The Hsp110:hsc70 Nucleotide Exchange Complex Length = 554

Iteration: 1
 Score = 48.5 bits (114), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 315 CMHVLSTLQSS---NVFVESLYDGLDFHHNVSRARFESLIGGLLTSFVQPIEDVLSRSNI 371
           C     TL SS   ++ ++SLY+G+DF+ +++RARFE L   L    + P+E  L  + +
Sbjct: 267 CERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRGTLDPVEKALRDAKL 326
Query: 372 THDQI 376
              QI
Sbjct: 327 DKSQI 331

>pdb|3D2E|B Chain B, Crystal Structure Of A Complex Of Sse1p And Hsp70, Selenomethionine- Labeled Crystals Length = 382

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 73/319 (22%), Positives = 139/319 (43%), Gaps = 53/319 (16%)
Query: 1   KSRLISQAKNTIIKNKRALNTELTETDIETIVRETKVDITTNKDMIEYKISYQESSRVKA 60
           K+++    +NT+   KR +  +  +  +++  +     +  + D  + ++SY+     KA
Sbjct: 56  KNQVALNPQNTVFDAKRLIGRKFGDPVVQSDXKHWPFQVINDGDKPKVQVSYK--GETKA 113
Query: 61  FNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEG 120
           F P ++++ +L       K     + Y G    Y ++ A   ++ +  Y N +  Q  + 
Sbjct: 114 FYPEEISSXVLT------KXKEIAEAYLG----YPVTNA---VITVPAYFNDSQRQATKD 160
Query: 121 HGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVA 180
            G              VI G     +R+ +  T     ++ YGL+R       KG  NV 
Sbjct: 161 AG--------------VIAGLN--VLRIINEPT---AAAIAYGLDRTG-----KGERNVL 196
Query: 181 IGYDEGSVLLKVGREEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLS 240
           I +D G     V      +++D +G   + A   +          E F+N    +V    
Sbjct: 197 I-FDLGGGTFDVS----ILTID-DGIFEVKATAGDTHLGG-----EDFDN---RLVNHFV 242
Query: 241 VHVTIKYRLDISDSHRSVAKLRAAAETCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARF 300
                K++ DIS + R+V +LR A E     LS+   +++ ++SL++G+DF+ +++RARF
Sbjct: 243 EEFKRKHKKDISQNKRAVRRLRTACERAKRTLSSSTQASLEIDSLFEGIDFYTSITRARF 302
Query: 301 ESLIGGLLTSFVQPCMHVL 319
           E L   L  S ++P    L
Sbjct: 303 EELCSDLFRSTLEPVEKAL 321

>pdb|3D2E|B Chain B, Crystal Structure Of A Complex Of Sse1p And Hsp70, Selenomethionine- Labeled Crystals Length = 382

Iteration: 1
 Score = 48.1 bits (113), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 39/65 (60%), Gaps = 3/65 (4%)
Query: 315 CMHVLSTLQSS---NVFVESLYDGLDFHHNVSRARFESLIGGLLTSFVQPIEDVLSRSNI 371
           C     TL SS   ++ ++SL++G+DF+ +++RARFE L   L  S ++P+E  L  + +
Sbjct: 267 CERAKRTLSSSTQASLEIDSLFEGIDFYTSITRARFEELCSDLFRSTLEPVEKALRDAKL 326
Query: 372 THDQI 376
              QI
Sbjct: 327 DKAQI 331

>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 53/104 (50%), Gaps = 7/104 (6%)
Query: 48  YKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIW 107
           Y I+  +   ++ ++ I    L+   L GH+ GV  + Y HGG    L+SG+ DR V++W
Sbjct: 134 YVITGADDKMIRVYDSINKKFLL--QLSGHDGGVWALKYAHGG---ILVSGSTDRTVRVW 188
Query: 108 DYQNKTCVQTLEGHGQNISA--VCFHPELPIVITGSEDGSVRVW 149
           D +   C    EGH   +    +  +  +  ++TGS D ++ VW
Sbjct: 189 DIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVW 232

>pdb|1BA1|A Chain A, Heat-Shock Cognate 70kd Protein 44kd Atpase N-Terminal Mutant With Cys 17 Replaced By Lys Length = 386

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 27/74 (36%), Positives = 46/74 (62%)
Query: 246 KYRLDISDSHRSVAKLRAAAETCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIG 305
           K++ DIS++ R+V +LR A E     LS+   +++ ++SLY+G+DF+ +++RARFE L  
Sbjct: 248 KHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNA 307
Query: 306 GLLTSFVQPCMHVL 319
            L    + P    L
Sbjct: 308 DLFRGTLDPVEKAL 321

>pdb|1BA1|A Chain A, Heat-Shock Cognate 70kd Protein 44kd Atpase N-Terminal Mutant With Cys 17 Replaced By Lys Length = 386

Iteration: 1
 Score = 48.1 bits (113), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 315 CMHVLSTLQSS---NVFVESLYDGLDFHHNVSRARFESLIGGLLTSFVQPIEDVLSRSNI 371
           C     TL SS   ++ ++SLY+G+DF+ +++RARFE L   L    + P+E  L  + +
Sbjct: 267 CERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRGTLDPVEKALRDAKL 326
Query: 372 THDQI 376
              QI
Sbjct: 327 DKSQI 331

>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 53/104 (50%), Gaps = 7/104 (6%)
Query: 48  YKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIW 107
           Y I+  +   ++ ++ I    L+   L GH+ GV  + Y HGG    L+SG+ DR V++W
Sbjct: 134 YVITGADDKXIRVYDSINKKFLL--QLSGHDGGVWALKYAHGG---ILVSGSTDRTVRVW 188
Query: 108 DYQNKTCVQTLEGHGQNISA--VCFHPELPIVITGSEDGSVRVW 149
           D +   C    EGH   +    +  +  +  ++TGS D ++ VW
Sbjct: 189 DIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVW 232

>pdb|1NGD|A Chain A, Structural Basis Of The 70-kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 27/74 (36%), Positives = 46/74 (62%)
Query: 246 KYRLDISDSHRSVAKLRAAAETCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIG 305
           K++ DIS++ R+V +LR A E     LS+   +++ ++SLY+G+DF+ +++RARFE L  
Sbjct: 248 KHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNA 307
Query: 306 GLLTSFVQPCMHVL 319
            L    + P    L
Sbjct: 308 DLFRGTLDPVEKAL 321

>pdb|1NGD|A Chain A, Structural Basis Of The 70-kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386

Iteration: 1
 Score = 48.1 bits (113), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 315 CMHVLSTLQSS---NVFVESLYDGLDFHHNVSRARFESLIGGLLTSFVQPIEDVLSRSNI 371
           C     TL SS   ++ ++SLY+G+DF+ +++RARFE L   L    + P+E  L  + +
Sbjct: 267 CERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRGTLDPVEKALRDAKL 326
Query: 372 THDQI 376
              QI
Sbjct: 327 DKSQI 331

>pdb|1NGF|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 27/74 (36%), Positives = 46/74 (62%)
Query: 246 KYRLDISDSHRSVAKLRAAAETCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIG 305
           K++ DIS++ R+V +LR A E     LS+   +++ ++SLY+G+DF+ +++RARFE L  
Sbjct: 248 KHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNA 307
Query: 306 GLLTSFVQPCMHVL 319
            L    + P    L
Sbjct: 308 DLFRGTLDPVEKAL 321

>pdb|1NGF|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386

Iteration: 1
 Score = 48.1 bits (113), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 315 CMHVLSTLQSS---NVFVESLYDGLDFHHNVSRARFESLIGGLLTSFVQPIEDVLSRSNI 371
           C     TL SS   ++ ++SLY+G+DF+ +++RARFE L   L    + P+E  L  + +
Sbjct: 267 CERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRGTLDPVEKALRDAKL 326
Query: 372 THDQI 376
              QI
Sbjct: 327 DKSQI 331

>pdb|1HPM|A Chain A, How Potassium Affects The Activity Of The Molecular Chaperone Hsc70. Ii. Potassium Binds Specifically In The Atpase Active Site Length = 386

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 27/74 (36%), Positives = 46/74 (62%)
Query: 246 KYRLDISDSHRSVAKLRAAAETCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIG 305
           K++ DIS++ R+V +LR A E     LS+   +++ ++SLY+G+DF+ +++RARFE L  
Sbjct: 248 KHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNA 307
Query: 306 GLLTSFVQPCMHVL 319
            L    + P    L
Sbjct: 308 DLFRGTLDPVEKAL 321

>pdb|1HPM|A Chain A, How Potassium Affects The Activity Of The Molecular Chaperone Hsc70. Ii. Potassium Binds Specifically In The Atpase Active Site Length = 386

Iteration: 1
 Score = 48.1 bits (113), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 315 CMHVLSTLQSS---NVFVESLYDGLDFHHNVSRARFESLIGGLLTSFVQPIEDVLSRSNI 371
           C     TL SS   ++ ++SLY+G+DF+ +++RARFE L   L    + P+E  L  + +
Sbjct: 267 CERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRGTLDPVEKALRDAKL 326
Query: 372 THDQI 376
              QI
Sbjct: 327 DKSQI 331

>pdb|1NGH|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 27/74 (36%), Positives = 46/74 (62%)
Query: 246 KYRLDISDSHRSVAKLRAAAETCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIG 305
           K++ DIS++ R+V +LR A E     LS+   +++ ++SLY+G+DF+ +++RARFE L  
Sbjct: 248 KHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNA 307
Query: 306 GLLTSFVQPCMHVL 319
            L    + P    L
Sbjct: 308 DLFRGTLDPVEKAL 321

>pdb|1NGH|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386

Iteration: 1
 Score = 48.1 bits (113), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 315 CMHVLSTLQSS---NVFVESLYDGLDFHHNVSRARFESLIGGLLTSFVQPIEDVLSRSNI 371
           C     TL SS   ++ ++SLY+G+DF+ +++RARFE L   L    + P+E  L  + +
Sbjct: 267 CERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRGTLDPVEKALRDAKL 326
Query: 372 THDQI 376
              QI
Sbjct: 327 DKSQI 331

>pdb|1ATS|A Chain A, Threonine 204 Of The Chaperone Protein Hsc70 Influences The Structure Of The Active Site But Is Not Essential For Atp Hydrolysis Length = 386

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 27/74 (36%), Positives = 46/74 (62%)
Query: 246 KYRLDISDSHRSVAKLRAAAETCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIG 305
           K++ DIS++ R+V +LR A E     LS+   +++ ++SLY+G+DF+ +++RARFE L  
Sbjct: 248 KHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNA 307
Query: 306 GLLTSFVQPCMHVL 319
            L    + P    L
Sbjct: 308 DLFRGTLDPVEKAL 321

>pdb|1ATS|A Chain A, Threonine 204 Of The Chaperone Protein Hsc70 Influences The Structure Of The Active Site But Is Not Essential For Atp Hydrolysis Length = 386

Iteration: 1
 Score = 48.1 bits (113), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 315 CMHVLSTLQSS---NVFVESLYDGLDFHHNVSRARFESLIGGLLTSFVQPIEDVLSRSNI 371
           C     TL SS   ++ ++SLY+G+DF+ +++RARFE L   L    + P+E  L  + +
Sbjct: 267 CERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRGTLDPVEKALRDAKL 326
Query: 372 THDQI 376
              QI
Sbjct: 327 DKSQI 331

>pdb|1BA0|A Chain A, Heat-Shock Cognate 70kd Protein 44kd Atpase N-Terminal 1nge 3 Length = 386

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 27/74 (36%), Positives = 46/74 (62%)
Query: 246 KYRLDISDSHRSVAKLRAAAETCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIG 305
           K++ DIS++ R+V +LR A E     LS+   +++ ++SLY+G+DF+ +++RARFE L  
Sbjct: 248 KHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNA 307
Query: 306 GLLTSFVQPCMHVL 319
            L    + P    L
Sbjct: 308 DLFRGTLDPVEKAL 321

>pdb|1BA0|A Chain A, Heat-Shock Cognate 70kd Protein 44kd Atpase N-Terminal 1nge 3 Length = 386

Iteration: 1
 Score = 48.1 bits (113), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 315 CMHVLSTLQSS---NVFVESLYDGLDFHHNVSRARFESLIGGLLTSFVQPIEDVLSRSNI 371
           C     TL SS   ++ ++SLY+G+DF+ +++RARFE L   L    + P+E  L  + +
Sbjct: 267 CERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRGTLDPVEKALRDAKL 326
Query: 372 THDQI 376
              QI
Sbjct: 327 DKSQI 331

>pdb|1NGG|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 27/74 (36%), Positives = 46/74 (62%)
Query: 246 KYRLDISDSHRSVAKLRAAAETCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIG 305
           K++ DIS++ R+V +LR A E     LS+   +++ ++SLY+G+DF+ +++RARFE L  
Sbjct: 248 KHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNA 307
Query: 306 GLLTSFVQPCMHVL 319
            L    + P    L
Sbjct: 308 DLFRGTLDPVEKAL 321

>pdb|1NGG|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386

Iteration: 1
 Score = 48.1 bits (113), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 315 CMHVLSTLQSS---NVFVESLYDGLDFHHNVSRARFESLIGGLLTSFVQPIEDVLSRSNI 371
           C     TL SS   ++ ++SLY+G+DF+ +++RARFE L   L    + P+E  L  + +
Sbjct: 267 CERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRGTLDPVEKALRDAKL 326
Query: 372 THDQI 376
              QI
Sbjct: 327 DKSQI 331

>pdb|1NGB|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 27/74 (36%), Positives = 46/74 (62%)
Query: 246 KYRLDISDSHRSVAKLRAAAETCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIG 305
           K++ DIS++ R+V +LR A E     LS+   +++ ++SLY+G+DF+ +++RARFE L  
Sbjct: 248 KHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNA 307
Query: 306 GLLTSFVQPCMHVL 319
            L    + P    L
Sbjct: 308 DLFRGTLDPVEKAL 321

>pdb|1NGB|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386

Iteration: 1
 Score = 48.1 bits (113), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 315 CMHVLSTLQSS---NVFVESLYDGLDFHHNVSRARFESLIGGLLTSFVQPIEDVLSRSNI 371
           C     TL SS   ++ ++SLY+G+DF+ +++RARFE L   L    + P+E  L  + +
Sbjct: 267 CERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRGTLDPVEKALRDAKL 326
Query: 372 THDQI 376
              QI
Sbjct: 327 DKSQI 331

>pdb|1NGC|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 27/74 (36%), Positives = 46/74 (62%)
Query: 246 KYRLDISDSHRSVAKLRAAAETCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIG 305
           K++ DIS++ R+V +LR A E     LS+   +++ ++SLY+G+DF+ +++RARFE L  
Sbjct: 248 KHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNA 307
Query: 306 GLLTSFVQPCMHVL 319
            L    + P    L
Sbjct: 308 DLFRGTLDPVEKAL 321

>pdb|1NGC|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386

Iteration: 1
 Score = 48.1 bits (113), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 315 CMHVLSTLQSS---NVFVESLYDGLDFHHNVSRARFESLIGGLLTSFVQPIEDVLSRSNI 371
           C     TL SS   ++ ++SLY+G+DF+ +++RARFE L   L    + P+E  L  + +
Sbjct: 267 CERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRGTLDPVEKALRDAKL 326
Query: 372 THDQI 376
              QI
Sbjct: 327 DKSQI 331

>pdb|1NGE|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 27/74 (36%), Positives = 46/74 (62%)
Query: 246 KYRLDISDSHRSVAKLRAAAETCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIG 305
           K++ DIS++ R+V +LR A E     LS+   +++ ++SLY+G+DF+ +++RARFE L  
Sbjct: 248 KHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNA 307
Query: 306 GLLTSFVQPCMHVL 319
            L    + P    L
Sbjct: 308 DLFRGTLDPVEKAL 321

>pdb|1NGE|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386

Iteration: 1
 Score = 48.1 bits (113), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 315 CMHVLSTLQSS---NVFVESLYDGLDFHHNVSRARFESLIGGLLTSFVQPIEDVLSRSNI 371
           C     TL SS   ++ ++SLY+G+DF+ +++RARFE L   L    + P+E  L  + +
Sbjct: 267 CERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRGTLDPVEKALRDAKL 326
Query: 372 THDQI 376
              QI
Sbjct: 327 DKSQI 331

>pdb|1BUP|A Chain A, T13s Mutant Of Bovine 70 Kilodalton Heat Shock Protein Length = 386

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 27/74 (36%), Positives = 46/74 (62%)
Query: 246 KYRLDISDSHRSVAKLRAAAETCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIG 305
           K++ DIS++ R+V +LR A E     LS+   +++ ++SLY+G+DF+ +++RARFE L  
Sbjct: 248 KHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNA 307
Query: 306 GLLTSFVQPCMHVL 319
            L    + P    L
Sbjct: 308 DLFRGTLDPVEKAL 321

>pdb|1BUP|A Chain A, T13s Mutant Of Bovine 70 Kilodalton Heat Shock Protein Length = 386

Iteration: 1
 Score = 48.1 bits (113), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 315 CMHVLSTLQSS---NVFVESLYDGLDFHHNVSRARFESLIGGLLTSFVQPIEDVLSRSNI 371
           C     TL SS   ++ ++SLY+G+DF+ +++RARFE L   L    + P+E  L  + +
Sbjct: 267 CERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRGTLDPVEKALRDAKL 326
Query: 372 THDQI 376
              QI
Sbjct: 327 DKSQI 331

>pdb|1NGA|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 27/74 (36%), Positives = 46/74 (62%)
Query: 246 KYRLDISDSHRSVAKLRAAAETCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIG 305
           K++ DIS++ R+V +LR A E     LS+   +++ ++SLY+G+DF+ +++RARFE L  
Sbjct: 248 KHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNA 307
Query: 306 GLLTSFVQPCMHVL 319
            L    + P    L
Sbjct: 308 DLFRGTLDPVEKAL 321

>pdb|1NGA|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386

Iteration: 1
 Score = 48.1 bits (113), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 315 CMHVLSTLQSS---NVFVESLYDGLDFHHNVSRARFESLIGGLLTSFVQPIEDVLSRSNI 371
           C     TL SS   ++ ++SLY+G+DF+ +++RARFE L   L    + P+E  L  + +
Sbjct: 267 CERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRGTLDPVEKALRDAKL 326
Query: 372 THDQI 376
              QI
Sbjct: 327 DKSQI 331

>pdb|1KAZ|A Chain A, 70kd Heat Shock Cognate Protein Atpase Domain, K71e Mutant Length = 381

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 27/74 (36%), Positives = 46/74 (62%)
Query: 246 KYRLDISDSHRSVAKLRAAAETCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIG 305
           K++ DIS++ R+V +LR A E     LS+   +++ ++SLY+G+DF+ +++RARFE L  
Sbjct: 248 KHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNA 307
Query: 306 GLLTSFVQPCMHVL 319
            L    + P    L
Sbjct: 308 DLFRGTLDPVEKAL 321

>pdb|1KAZ|A Chain A, 70kd Heat Shock Cognate Protein Atpase Domain, K71e Mutant Length = 381

Iteration: 1
 Score = 48.1 bits (113), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 315 CMHVLSTLQSS---NVFVESLYDGLDFHHNVSRARFESLIGGLLTSFVQPIEDVLSRSNI 371
           C     TL SS   ++ ++SLY+G+DF+ +++RARFE L   L    + P+E  L  + +
Sbjct: 267 CERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRGTLDPVEKALRDAKL 326
Query: 372 THDQI 376
              QI
Sbjct: 327 DKSQI 331

>pdb|1HX1|A Chain A, Crystal Structure Of A Bag Domain In Complex With The Hsc70 Atpase Domain Length = 400

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 27/74 (36%), Positives = 46/74 (62%)
Query: 246 KYRLDISDSHRSVAKLRAAAETCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIG 305
           K++ DIS++ R+V +LR A E     LS+   +++ ++SLY+G+DF+ +++RARFE L  
Sbjct: 267 KHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNA 326
Query: 306 GLLTSFVQPCMHVL 319
            L    + P    L
Sbjct: 327 DLFRGTLDPVEKAL 340

>pdb|1HX1|A Chain A, Crystal Structure Of A Bag Domain In Complex With The Hsc70 Atpase Domain Length = 400

Iteration: 1
 Score = 48.1 bits (113), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 315 CMHVLSTLQSS---NVFVESLYDGLDFHHNVSRARFESLIGGLLTSFVQPIEDVLSRSNI 371
           C     TL SS   ++ ++SLY+G+DF+ +++RARFE L   L    + P+E  L  + +
Sbjct: 286 CERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRGTLDPVEKALRDAKL 345
Query: 372 THDQI 376
              QI
Sbjct: 346 DKSQI 350

>pdb|1KAX|A Chain A, 70kd Heat Shock Cognate Protein Atpase Domain, K71m Mutant Length = 381

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 27/74 (36%), Positives = 46/74 (62%)
Query: 246 KYRLDISDSHRSVAKLRAAAETCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIG 305
           K++ DIS++ R+V +LR A E     LS+   +++ ++SLY+G+DF+ +++RARFE L  
Sbjct: 248 KHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNA 307
Query: 306 GLLTSFVQPCMHVL 319
            L    + P    L
Sbjct: 308 DLFRGTLDPVEKAL 321

>pdb|1KAX|A Chain A, 70kd Heat Shock Cognate Protein Atpase Domain, K71m Mutant Length = 381

Iteration: 1
 Score = 48.1 bits (113), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 315 CMHVLSTLQSS---NVFVESLYDGLDFHHNVSRARFESLIGGLLTSFVQPIEDVLSRSNI 371
           C     TL SS   ++ ++SLY+G+DF+ +++RARFE L   L    + P+E  L  + +
Sbjct: 267 CERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRGTLDPVEKALRDAKL 326
Query: 372 THDQI 376
              QI
Sbjct: 327 DKSQI 331

>pdb|1ATR|A Chain A, Threonine 204 Of The Chaperone Protein Hsc70 Influences The Structure Of The Active Site But Is Not Essential For Atp Hydrolysis Length = 386

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 27/74 (36%), Positives = 46/74 (62%)
Query: 246 KYRLDISDSHRSVAKLRAAAETCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIG 305
           K++ DIS++ R+V +LR A E     LS+   +++ ++SLY+G+DF+ +++RARFE L  
Sbjct: 248 KHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNA 307
Query: 306 GLLTSFVQPCMHVL 319
            L    + P    L
Sbjct: 308 DLFRGTLDPVEKAL 321

>pdb|1ATR|A Chain A, Threonine 204 Of The Chaperone Protein Hsc70 Influences The Structure Of The Active Site But Is Not Essential For Atp Hydrolysis Length = 386

Iteration: 1
 Score = 48.1 bits (113), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 315 CMHVLSTLQSS---NVFVESLYDGLDFHHNVSRARFESLIGGLLTSFVQPIEDVLSRSNI 371
           C     TL SS   ++ ++SLY+G+DF+ +++RARFE L   L    + P+E  L  + +
Sbjct: 267 CERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRGTLDPVEKALRDAKL 326
Query: 372 THDQI 376
              QI
Sbjct: 327 DKSQI 331

>pdb|1KAY|A Chain A, 70kd Heat Shock Cognate Protein Atpase Domain, K71a Mutant Length = 381

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 27/74 (36%), Positives = 46/74 (62%)
Query: 246 KYRLDISDSHRSVAKLRAAAETCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIG 305
           K++ DIS++ R+V +LR A E     LS+   +++ ++SLY+G+DF+ +++RARFE L  
Sbjct: 248 KHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNA 307
Query: 306 GLLTSFVQPCMHVL 319
            L    + P    L
Sbjct: 308 DLFRGTLDPVEKAL 321

>pdb|1KAY|A Chain A, 70kd Heat Shock Cognate Protein Atpase Domain, K71a Mutant Length = 381

Iteration: 1
 Score = 48.1 bits (113), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 315 CMHVLSTLQSS---NVFVESLYDGLDFHHNVSRARFESLIGGLLTSFVQPIEDVLSRSNI 371
           C     TL SS   ++ ++SLY+G+DF+ +++RARFE L   L    + P+E  L  + +
Sbjct: 267 CERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRGTLDPVEKALRDAKL 326
Query: 372 THDQI 376
              QI
Sbjct: 327 DKSQI 331

>pdb|3FZF|A Chain A, Crystal Structure Of Hsc70BAG1 IN COMPLEX WITH ATP Length = 381

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 27/74 (36%), Positives = 46/74 (62%)
Query: 246 KYRLDISDSHRSVAKLRAAAETCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIG 305
           K++ DIS++ R+V +LR A E     LS+   +++ ++SLY+G+DF+ +++RARFE L  
Sbjct: 248 KHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNA 307
Query: 306 GLLTSFVQPCMHVL 319
            L    + P    L
Sbjct: 308 DLFRGTLDPVEKAL 321

>pdb|3FZF|A Chain A, Crystal Structure Of Hsc70BAG1 IN COMPLEX WITH ATP Length = 381

Iteration: 1
 Score = 48.1 bits (113), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 315 CMHVLSTLQSS---NVFVESLYDGLDFHHNVSRARFESLIGGLLTSFVQPIEDVLSRSNI 371
           C     TL SS   ++ ++SLY+G+DF+ +++RARFE L   L    + P+E  L  + +
Sbjct: 267 CERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRGTLDPVEKALRDAKL 326
Query: 372 THDQI 376
              QI
Sbjct: 327 DKSQI 331

>pdb|3CQX|A Chain A, Chaperone Complex Length = 386

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 27/74 (36%), Positives = 46/74 (62%)
Query: 246 KYRLDISDSHRSVAKLRAAAETCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIG 305
           K++ DIS++ R+V +LR A E     LS+   +++ ++SLY+G+DF+ +++RARFE L  
Sbjct: 253 KHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNA 312
Query: 306 GLLTSFVQPCMHVL 319
            L    + P    L
Sbjct: 313 DLFRGTLDPVEKAL 326

>pdb|3CQX|A Chain A, Chaperone Complex Length = 386

Iteration: 1
 Score = 48.1 bits (113), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 315 CMHVLSTLQSS---NVFVESLYDGLDFHHNVSRARFESLIGGLLTSFVQPIEDVLSRSNI 371
           C     TL SS   ++ ++SLY+G+DF+ +++RARFE L   L    + P+E  L  + +
Sbjct: 272 CERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRGTLDPVEKALRDAKL 331
Query: 372 THDQI 376
              QI
Sbjct: 332 DKSQI 336

>pdb|2BUP|A Chain A, T13g Mutant Of The Atpase Fragment Of Bovine Hsc70 Length = 381

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 27/74 (36%), Positives = 46/74 (62%)
Query: 246 KYRLDISDSHRSVAKLRAAAETCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIG 305
           K++ DIS++ R+V +LR A E     LS+   +++ ++SLY+G+DF+ +++RARFE L  
Sbjct: 248 KHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNA 307
Query: 306 GLLTSFVQPCMHVL 319
            L    + P    L
Sbjct: 308 DLFRGTLDPVEKAL 321

>pdb|2BUP|A Chain A, T13g Mutant Of The Atpase Fragment Of Bovine Hsc70 Length = 381

Iteration: 1
 Score = 48.1 bits (113), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 315 CMHVLSTLQSS---NVFVESLYDGLDFHHNVSRARFESLIGGLLTSFVQPIEDVLSRSNI 371
           C     TL SS   ++ ++SLY+G+DF+ +++RARFE L   L    + P+E  L  + +
Sbjct: 267 CERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRGTLDPVEKALRDAKL 326
Query: 372 THDQI 376
              QI
Sbjct: 327 DKSQI 331

>pdb|2QW9|B Chain B, Crystal Structure Of Bovine Hsc70 (1-394aa)in The Apo State Length = 394

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 27/74 (36%), Positives = 46/74 (62%)
Query: 246 KYRLDISDSHRSVAKLRAAAETCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIG 305
           K++ DIS++ R+V +LR A E     LS+   +++ ++SLY+G+DF+ +++RARFE L  
Sbjct: 248 KHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNA 307
Query: 306 GLLTSFVQPCMHVL 319
            L    + P    L
Sbjct: 308 DLFRGTLDPVEKAL 321

>pdb|2QW9|B Chain B, Crystal Structure Of Bovine Hsc70 (1-394aa)in The Apo State Length = 394

Iteration: 1
 Score = 47.8 bits (112), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 315 CMHVLSTLQSS---NVFVESLYDGLDFHHNVSRARFESLIGGLLTSFVQPIEDVLSRSNI 371
           C     TL SS   ++ ++SLY+G+DF+ +++RARFE L   L    + P+E  L  + +
Sbjct: 267 CERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRGTLDPVEKALRDAKL 326
Query: 372 THDQI 376
              QI
Sbjct: 327 DKSQI 331

>pdb|1QQO|A Chain A, E175s Mutant Of Bovine 70 Kilodalton Heat Shock Protein Length = 378

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 27/74 (36%), Positives = 46/74 (62%)
Query: 246 KYRLDISDSHRSVAKLRAAAETCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIG 305
           K++ DIS++ R+V +LR A E     LS+   +++ ++SLY+G+DF+ +++RARFE L  
Sbjct: 245 KHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNA 304
Query: 306 GLLTSFVQPCMHVL 319
            L    + P    L
Sbjct: 305 DLFRGTLDPVEKAL 318

>pdb|1QQO|A Chain A, E175s Mutant Of Bovine 70 Kilodalton Heat Shock Protein Length = 378

Iteration: 1
 Score = 47.8 bits (112), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 315 CMHVLSTLQSS---NVFVESLYDGLDFHHNVSRARFESLIGGLLTSFVQPIEDVLSRSNI 371
           C     TL SS   ++ ++SLY+G+DF+ +++RARFE L   L    + P+E  L  + +
Sbjct: 264 CERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRGTLDPVEKALRDAKL 323
Query: 372 THDQI 376
              QI
Sbjct: 324 DKSQI 328

>pdb|2QWN|A Chain A, Crystal Structure Of Disulfide-Bond-Crosslinked Complex Of Bovine Hsc70 (1-386aa)r171c And Bovine Auxilin (810-910aa)d876c In The AdpPi State Length = 394

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 27/74 (36%), Positives = 46/74 (62%)
Query: 246 KYRLDISDSHRSVAKLRAAAETCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIG 305
           K++ DIS++ R+V +LR A E     LS+   +++ ++SLY+G+DF+ +++RARFE L  
Sbjct: 248 KHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNA 307
Query: 306 GLLTSFVQPCMHVL 319
            L    + P    L
Sbjct: 308 DLFRGTLDPVEKAL 321

>pdb|2QWN|A Chain A, Crystal Structure Of Disulfide-Bond-Crosslinked Complex Of Bovine Hsc70 (1-386aa)r171c And Bovine Auxilin (810-910aa)d876c In The AdpPi State Length = 394

Iteration: 1
 Score = 47.8 bits (112), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 315 CMHVLSTLQSS---NVFVESLYDGLDFHHNVSRARFESLIGGLLTSFVQPIEDVLSRSNI 371
           C     TL SS   ++ ++SLY+G+DF+ +++RARFE L   L    + P+E  L  + +
Sbjct: 267 CERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRGTLDPVEKALRDAKL 326
Query: 372 THDQI 376
              QI
Sbjct: 327 DKSQI 331

>pdb|1XQS|C Chain C, Crystal Structure Of The Hspbp1 Core Domain Complexed With The Fragment Of Hsp70 Atpase Domain Length = 191

Iteration: 1
 Score = 59.3 bits (142), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 27/74 (36%), Positives = 47/74 (63%)
Query: 246 KYRLDISDSHRSVAKLRAAAETCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIG 305
           K++ DIS + R+V +LR A E     LS+   +++ ++SL++G+DF+ +++RARFE L  
Sbjct: 68  KHKKDISQNKRAVRRLRTACERAKRTLSSSTQASLEIDSLFEGIDFYTSITRARFEELCS 127
Query: 306 GLLTSFVQPCMHVL 319
            L  S ++P    L
Sbjct: 128 DLFRSTLEPVEKAL 141

>pdb|1XQS|C Chain C, Crystal Structure Of The Hspbp1 Core Domain Complexed With The Fragment Of Hsp70 Atpase Domain Length = 191

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 39/65 (60%), Gaps = 3/65 (4%)
Query: 315 CMHVLSTLQSS---NVFVESLYDGLDFHHNVSRARFESLIGGLLTSFVQPIEDVLSRSNI 371
           C     TL SS   ++ ++SL++G+DF+ +++RARFE L   L  S ++P+E  L  + +
Sbjct: 87  CERAKRTLSSSTQASLEIDSLFEGIDFYTSITRARFEELCSDLFRSTLEPVEKALRDAKL 146
Query: 372 THDQI 376
              QI
Sbjct: 147 DKAQI 151

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Iteration: 1
 Score = 59.3 bits (142), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 40/101 (39%), Positives = 56/101 (55%), Gaps = 12/101 (11%)
Query: 71  LKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCF 130
           L  L GH   V CV Y    D   ++SGA D +VK+WD + +TC+ TL+GH   + ++ F
Sbjct: 232 LHVLMGHVAAVRCVQY----DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF 287
Query: 131 HPELPIVITGSEDGSVRVWHSGT----HRL--EISLTYGLE 165
             +   V++GS D S+RVW   T    H L    SLT G+E
Sbjct: 288 --DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGME 326

>pdb|4FSV|A Chain A, Crystal Structure Of A Heat Shock 70kda Protein 2 (Hspa2) From Homo Sapiens At 1.80 A Resolution Length = 387

Iteration: 1
 Score = 58.9 bits (141), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 45/74 (60%)
Query: 246 KYRLDISDSHRSVAKLRAAAETCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIG 305
           K++ DI  + R+V +LR A E     LS+   +++ ++SLY+G+DF+ +++RARFE L  
Sbjct: 251 KHKKDIGPNKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGVDFYTSITRARFEELNA 310
Query: 306 GLLTSFVQPCMHVL 319
            L    ++P    L
Sbjct: 311 DLFRGTLEPVEKAL 324

>pdb|4FSV|A Chain A, Crystal Structure Of A Heat Shock 70kda Protein 2 (Hspa2) From Homo Sapiens At 1.80 A Resolution Length = 387

Iteration: 1
 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 39/67 (58%), Gaps = 3/67 (4%)
Query: 315 CMHVLSTLQSS---NVFVESLYDGLDFHHNVSRARFESLIGGLLTSFVQPIEDVLSRSNI 371
           C     TL SS   ++ ++SLY+G+DF+ +++RARFE L   L    ++P+E  L  + +
Sbjct: 270 CERAKRTLSSSTQASIEIDSLYEGVDFYTSITRARFEELNADLFRGTLEPVEKALRDAKL 329
Query: 372 THDQINK 378
              QI +
Sbjct: 330 DKGQIQE 336

>pdb|3I33|A Chain A, Crystal Structure Of The Human 70kda Heat Shock Protein 2 (Hsp70-2) Atpase Domain In Complex With Adp And Inorganic Phosphate Length = 404

Iteration: 1
 Score = 58.5 bits (140), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 45/74 (60%)
Query: 246 KYRLDISDSHRSVAKLRAAAETCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIG 305
           K++ DI  + R+V +LR A E     LS+   +++ ++SLY+G+DF+ +++RARFE L  
Sbjct: 269 KHKKDIGPNKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGVDFYTSITRARFEELNA 328
Query: 306 GLLTSFVQPCMHVL 319
            L    ++P    L
Sbjct: 329 DLFRGTLEPVEKAL 342

>pdb|3I33|A Chain A, Crystal Structure Of The Human 70kda Heat Shock Protein 2 (Hsp70-2) Atpase Domain In Complex With Adp And Inorganic Phosphate Length = 404

Iteration: 1
 Score = 48.5 bits (114), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 39/67 (58%), Gaps = 3/67 (4%)
Query: 315 CMHVLSTLQSS---NVFVESLYDGLDFHHNVSRARFESLIGGLLTSFVQPIEDVLSRSNI 371
           C     TL SS   ++ ++SLY+G+DF+ +++RARFE L   L    ++P+E  L  + +
Sbjct: 288 CERAKRTLSSSTQASIEIDSLYEGVDFYTSITRARFEELNADLFRGTLEPVEKALRDAKL 347
Query: 372 THDQINK 378
              QI +
Sbjct: 348 DKGQIQE 354

>pdb|1QQM|A Chain A, D199s Mutant Of Bovine 70 Kilodalton Heat Shock Protein Length = 378

Iteration: 1
 Score = 57.8 bits (138), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 43/70 (61%)
Query: 250 DISDSHRSVAKLRAAAETCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIGGLLT 309
           DIS++ R+V +LR A E     LS+   +++ ++SLY+G+DF+ +++RARFE L   L  
Sbjct: 249 DISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFR 308
Query: 310 SFVQPCMHVL 319
             + P    L
Sbjct: 309 GTLDPVEKAL 318

>pdb|1QQM|A Chain A, D199s Mutant Of Bovine 70 Kilodalton Heat Shock Protein Length = 378

Iteration: 1
 Score = 47.8 bits (112), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 315 CMHVLSTLQSS---NVFVESLYDGLDFHHNVSRARFESLIGGLLTSFVQPIEDVLSRSNI 371
           C     TL SS   ++ ++SLY+G+DF+ +++RARFE L   L    + P+E  L  + +
Sbjct: 264 CERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRGTLDPVEKALRDAKL 323
Query: 372 THDQI 376
              QI
Sbjct: 324 DKSQI 328

>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 45/78 (57%), Gaps = 6/78 (7%)
Query: 72  KTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFH 131
           + L GH   VN VD+    D  Y++S + DR +K+W+      V+TL GH + I+ + + 
Sbjct: 250 RVLVGHRAAVNVVDF----DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR 305
Query: 132 PELPIVITGSEDGSVRVW 149
             L  V++GS D ++R+W
Sbjct: 306 DRL--VVSGSSDNTIRLW 321

>pdb|3QFP|A Chain A, Crystal Structure Of Yeast Hsp70 (BipKAR2) ATPASE DOMAIN Length = 390

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 50/84 (59%), Gaps = 2/84 (2%)
Query: 246 KYRLDISDSHRSVAKLRAAAETCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIG 305
           K+ +D+SD+++++AKL+  AE     LS+  S+ + ++S  DG+D    ++RA+FE L  
Sbjct: 257 KHGIDVSDNNKALAKLKREAEKAKRALSSQMSTRIEIDSFVDGIDLSETLTRAKFEELNL 316
Query: 306 GLLTSFVQPCMHVL--STLQSSNV 327
            L    ++P   VL  S L+  +V
Sbjct: 317 DLFKKTLKPVEKVLQDSGLEKKDV 340

>pdb|3LDL|A Chain A, Crystal Structure Of Human Grp78 (70kda Heat Shock Protein 5 BIP) Atpase Domain In Complex With Atp Length = 384

Iteration: 1
 Score = 55.5 bits (132), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 44/80 (55%), Gaps = 2/80 (2%)
Query: 250 DISDSHRSVAKLRAAAETCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIGGLLT 309
           D+   +R+V KLR   E     LS+   + + +ES Y+G DF   ++RA+FE L   L  
Sbjct: 254 DVRKDNRAVQKLRREVEKAKRALSSQHQARIEIESFYEGEDFSETLTRAKFEELNMDLFR 313
Query: 310 SFVQPCMHVL--STLQSSNV 327
           S ++P   VL  S L+ S++
Sbjct: 314 STMKPVQKVLEDSDLKKSDI 333

>pdb|3LDL|A Chain A, Crystal Structure Of Human Grp78 (70kda Heat Shock Protein 5 BIP) Atpase Domain In Complex With Atp Length = 384

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 21/67 (31%), Positives = 38/67 (56%)
Query: 312 VQPCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIGGLLTSFVQPIEDVLSRSNI 371
           V+     LS+   + + +ES Y+G DF   ++RA+FE L   L  S ++P++ VL  S++
Sbjct: 269 VEKAKRALSSQHQARIEIESFYEGEDFSETLTRAKFEELNMDLFRSTMKPVQKVLEDSDL 328
Query: 372 THDQINK 378
               I++
Sbjct: 329 KKSDIDE 335

>pdb|3IUC|A Chain A, Crystal Structure Of The Human 70kda Heat Shock Protein 5 (BipGRP78) ATPASE DOMAIN IN COMPLEX WITH ADP Length = 408

Iteration: 1
 Score = 55.5 bits (132), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 44/80 (55%), Gaps = 2/80 (2%)
Query: 250 DISDSHRSVAKLRAAAETCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIGGLLT 309
           D+   +R+V KLR   E     LS+   + + +ES Y+G DF   ++RA+FE L   L  
Sbjct: 275 DVRKDNRAVQKLRREVEKAKRALSSQHQARIEIESFYEGEDFSETLTRAKFEELNMDLFR 334
Query: 310 SFVQPCMHVL--STLQSSNV 327
           S ++P   VL  S L+ S++
Sbjct: 335 STMKPVQKVLEDSDLKKSDI 354

>pdb|3IUC|A Chain A, Crystal Structure Of The Human 70kda Heat Shock Protein 5 (BipGRP78) ATPASE DOMAIN IN COMPLEX WITH ADP Length = 408

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 21/67 (31%), Positives = 38/67 (56%)
Query: 312 VQPCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIGGLLTSFVQPIEDVLSRSNI 371
           V+     LS+   + + +ES Y+G DF   ++RA+FE L   L  S ++P++ VL  S++
Sbjct: 290 VEKAKRALSSQHQARIEIESFYEGEDFSETLTRAKFEELNMDLFRSTMKPVQKVLEDSDL 349
Query: 372 THDQINK 378
               I++
Sbjct: 350 KKSDIDE 356

>pdb|1QQN|A Chain A, D206s Mutant Of Bovine 70 Kilodalton Heat Shock Protein Length = 378

Iteration: 1
 Score = 54.7 bits (130), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 42/70 (60%)
Query: 250 DISDSHRSVAKLRAAAETCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIGGLLT 309
           DIS++ R+V +L  A E     LS+   +++ ++SLY+G+DF+ +++RARFE L   L  
Sbjct: 249 DISENKRAVRRLATACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFR 308
Query: 310 SFVQPCMHVL 319
             + P    L
Sbjct: 309 GTLDPVEKAL 318

>pdb|1QQN|A Chain A, D206s Mutant Of Bovine 70 Kilodalton Heat Shock Protein Length = 378

Iteration: 1
 Score = 47.8 bits (112), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 21/69 (30%), Positives = 39/69 (56%)
Query: 308 LTSFVQPCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIGGLLTSFVQPIEDVLS 367
           L +  +     LS+   +++ ++SLY+G+DF+ +++RARFE L   L    + P+E  L 
Sbjct: 260 LATACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRGTLDPVEKALR 319
Query: 368 RSNITHDQI 376
            + +   QI
Sbjct: 320 DAKLDKSQI 328

>pdb|3FE1|A Chain A, Crystal Structure Of The Human 70kda Heat Shock Protein 6 (Hsp70b') Atpase Domain In Complex With Adp And Inorganic Phosphate Length = 403

Iteration: 1
 Score = 54.7 bits (130), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 45/74 (60%)
Query: 246 KYRLDISDSHRSVAKLRAAAETCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIG 305
           K+  D+S + R++ +LR A E     LS+   + + ++SL++G+DF+ +++RARFE L  
Sbjct: 268 KHGKDLSGNKRALRRLRTACERAKRTLSSSTQATLEIDSLFEGVDFYTSITRARFEELCS 327
Query: 306 GLLTSFVQPCMHVL 319
            L  S ++P    L
Sbjct: 328 DLFRSTLEPVEKAL 341

>pdb|3FE1|A Chain A, Crystal Structure Of The Human 70kda Heat Shock Protein 6 (Hsp70b') Atpase Domain In Complex With Adp And Inorganic Phosphate Length = 403

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 38/65 (58%), Gaps = 3/65 (4%)
Query: 315 CMHVLSTLQSSN---VFVESLYDGLDFHHNVSRARFESLIGGLLTSFVQPIEDVLSRSNI 371
           C     TL SS    + ++SL++G+DF+ +++RARFE L   L  S ++P+E  L  + +
Sbjct: 287 CERAKRTLSSSTQATLEIDSLFEGVDFYTSITRARFEELCSDLFRSTLEPVEKALRDAKL 346
Query: 372 THDQI 376
              QI
Sbjct: 347 DKAQI 351

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 54.7 bits (130), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 42/73 (57%)
Query: 77  HEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPI 136
           H + VNC  + +  +   L +G++D  +K+WD   K C  T+ GH  +++   F P+  +
Sbjct: 698 HSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDEL 757
Query: 137 VITGSEDGSVRVW 149
           + + S DG++R+W
Sbjct: 758 LASCSADGTLRLW 770

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 54.7 bits (130), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 42/73 (57%)
Query: 77  HEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPI 136
           H + VNC  + +  +   L +G++D  +K+WD   K C  T+ GH  +++   F P+  +
Sbjct: 705 HSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDEL 764
Query: 137 VITGSEDGSVRVW 149
           + + S DG++R+W
Sbjct: 765 LASCSADGTLRLW 777

>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 32/58 (55%)
Query: 91  DKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRV 148
           D    +SGA D   K+WD +   C QT  GH  +I+A+CF P      TGS+D + R+
Sbjct: 206 DTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRL 263

>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 32/58 (55%)
Query: 91  DKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRV 148
           D    +SGA D   K+WD +   C QT  GH  +I+A+CF P      TGS+D + R+
Sbjct: 195 DTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRL 252

>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 32/58 (55%)
Query: 91  DKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRV 148
           D    +SGA D   K+WD +   C QT  GH  +I+A+CF P      TGS+D + R+
Sbjct: 195 DTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRL 252

>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 32/58 (55%)
Query: 91  DKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRV 148
           D    +SGA D   K+WD +   C QT  GH  +I+A+CF P      TGS+D + R+
Sbjct: 195 DTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRL 252

>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 32/58 (55%)
Query: 91  DKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRV 148
           D    +SGA D   K+WD +   C QT  GH  +I+A+CF P      TGS+D + R+
Sbjct: 195 DTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRL 252

>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354

Iteration: 1
 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 22/80 (27%), Positives = 43/80 (53%)
Query: 70  ILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVC 129
           +L++ +GH   V C+D          +SG  D+   +WD ++  CVQ  E H  ++++V 
Sbjct: 188 LLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVR 247
Query: 130 FHPELPIVITGSEDGSVRVW 149
           ++P      +GS+D + R++
Sbjct: 248 YYPSGDAFASGSDDATCRLY 267

>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 22/79 (27%), Positives = 44/79 (55%), Gaps = 2/79 (2%)
Query: 72  KTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFH 131
           + L GH   V+ V   + G+  + +S + D  +++W+ QN  C     GH +++ +V F 
Sbjct: 61  RRLEGHSAFVSDVALSNNGN--FAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFS 118
Query: 132 PELPIVITGSEDGSVRVWH 150
           P+   +++G  D ++RVW+
Sbjct: 119 PDNRQIVSGGRDNALRVWN 137

>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 39/74 (52%)
Query: 76  GHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELP 135
           GH   V+CV +     +P ++S + D+ VK+W+  N     TL GH   +S V   P+  
Sbjct: 515 GHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGS 574
Query: 136 IVITGSEDGSVRVW 149
           +  +G +DG V +W
Sbjct: 575 LCASGGKDGVVLLW 588

>pdb|3KVG|A Chain A, Crystal Structure Of The N-Terminal Domain Of Hsp70 (Cgd2_20) From Cryptosporidium Parvum In Complex With Amppnp Length = 400

Iteration: 1
 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 22/71 (30%), Positives = 40/71 (56%)
Query: 249 LDISDSHRSVAKLRAAAETCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIGGLL 308
           +D++ + R++ +LR   E     LS+   + + ++SLY+G+D+   +SRARFE L     
Sbjct: 268 MDLTTNARALRRLRTQCERAKRTLSSSTQATIELDSLYEGIDYSVAISRARFEELCADYF 327
Query: 309 TSFVQPCMHVL 319
            + + P   VL
Sbjct: 328 RATLAPVEKVL 338

>pdb|3KVG|A Chain A, Crystal Structure Of The N-Terminal Domain Of Hsp70 (Cgd2_20) From Cryptosporidium Parvum In Complex With Amppnp Length = 400

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Query: 315 CMHVLSTLQSSN---VFVESLYDGLDFHHNVSRARFESLIGGLLTSFVQPIEDVLSRSNI 371
           C     TL SS    + ++SLY+G+D+   +SRARFE L      + + P+E VL  + +
Sbjct: 284 CERAKRTLSSSTQATIELDSLYEGIDYSVAISRARFEELCADYFRATLAPVEKVLKDAGM 343

>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321

Iteration: 1
 Score = 48.1 bits (113), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 35/58 (60%)
Query: 91  DKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRV 148
           D  YL SGA D ++ I+D      + TLEGH   I ++ F P+  +++T S+DG +++
Sbjct: 175 DGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKI 232

>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/156 (24%), Positives = 70/156 (44%), Gaps = 7/156 (4%)
Query: 95  LISGADDRLVKIWDYQNK--TCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSG 152
           +++G+ D LVK+W ++++      +LEGH   + +V     LPI  + S D  +R+W   
Sbjct: 51  VVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLE 110
Query: 153 THRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSV-LLKVGREEPAVSMDVNGCKIIWA 211
             +   S+  G    WT++    S  +A G   G V +  V   +   S+D  G  I+  
Sbjct: 111 NGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSI 170
Query: 212 RHSE----VQQANLKTMPEVFENITAGVVLTLSVHV 243
            +S     +    +  +  +F+  T  ++ TL  H 
Sbjct: 171 AYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHA 206

>pdb|4GNI|A Chain A, Structure Of The Ssz1 Atpase Bound To Atp And Magnesium Length = 409

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 37/62 (59%)
Query: 250 DISDSHRSVAKLRAAAETCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIGGLLT 309
           D  ++ RS+AKLR  AE+    LS   +++  VESL DGLDF   ++R R+E++   +  
Sbjct: 266 DPRENPRSLAKLRLEAESTKRALSRSTNASFSVESLIDGLDFASTINRLRYETIARTVFE 325
Query: 310 SF 311
            F
Sbjct: 326 GF 327

>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1 Length = 330

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 44/84 (52%), Gaps = 6/84 (7%)
Query: 70  ILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDY----QNKTCVQTLEGHGQNI 125
           +L  + GHE  V  V + + G   YL + + D+ V IW+     +   C+  L+ H Q++
Sbjct: 99  LLAIIEGHENEVKGVAWSNDG--YYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDV 156
Query: 126 SAVCFHPELPIVITGSEDGSVRVW 149
             V +HP   ++ + S D +VR+W
Sbjct: 157 KHVIWHPSEALLASSSYDDTVRIW 180

>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/156 (21%), Positives = 67/156 (42%), Gaps = 12/156 (7%)
Query: 50  ISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDY 109
           +S      +K +N + V    ++    H + V+CV +      P ++S   D+LVK+W+ 
Sbjct: 121 VSGSRDKTIKLWNTLGVCKYTVQD-ESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNL 179
Query: 110 QNKTCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVW--HSGTHRLEI-------SL 160
            N        GH   ++ V   P+  +  +G +DG   +W  + G H   +       +L
Sbjct: 180 ANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINAL 239
Query: 161 TYGLERVWTISSLKGSNNVAIGYDEGSVLLKVGREE 196
            +   R W  ++   S  + I   EG +++   ++E
Sbjct: 240 CFSPNRYWLCAATGPS--IKIWDLEGKIIVDELKQE 273

>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/156 (21%), Positives = 67/156 (42%), Gaps = 12/156 (7%)
Query: 50  ISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDY 109
           +S      +K +N + V    ++    H + V+CV +      P ++S   D+LVK+W+ 
Sbjct: 144 VSGSRDKTIKLWNTLGVCKYTVQD-ESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNL 202
Query: 110 QNKTCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVW--HSGTHRLEI-------SL 160
            N        GH   ++ V   P+  +  +G +DG   +W  + G H   +       +L
Sbjct: 203 ANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINAL 262
Query: 161 TYGLERVWTISSLKGSNNVAIGYDEGSVLLKVGREE 196
            +   R W  ++   S  + I   EG +++   ++E
Sbjct: 263 CFSPNRYWLCAATGPS--IKIWDLEGKIIVDELKQE 296

>pdb|2QXL|A Chain A, Crystal Structure Analysis Of Sse1, A Yeast Hsp110 Length = 658

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/80 (28%), Positives = 41/80 (51%)
Query: 246 KYRLDISDSHRSVAKLRAAAETCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIG 305
           KY++DI ++ ++  ++  AAE    VLS   ++   VES+ + +D    +SR   E L+ 
Sbjct: 251 KYKIDIRENPKAYNRILTAAEKLKKVLSANTNAPFSVESVMNDVDVSSQLSREELEELVK 310
Query: 306 GLLTSFVQPCMHVLSTLQSS 325
            LL    +P    L+  + S
Sbjct: 311 PLLERVTEPVTKALAQAKLS 330

>pdb|3C7N|A Chain A, Structure Of The Hsp110:hsc70 Nucleotide Exchange Complex Length = 668

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/80 (28%), Positives = 41/80 (51%)
Query: 246 KYRLDISDSHRSVAKLRAAAETCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIG 305
           KY++DI ++ ++  ++  AAE    VLS   ++   VES+ + +D    +SR   E L+ 
Sbjct: 254 KYKIDIRENPKAYNRILTAAEKLKKVLSANTNAPFSVESVMNDVDVSSQLSREELEELVK 313
Query: 306 GLLTSFVQPCMHVLSTLQSS 325
            LL    +P    L+  + S
Sbjct: 314 PLLERVTEPVTKALAQAKLS 333

>pdb|3D2E|A Chain A, Crystal Structure Of A Complex Of Sse1p And Hsp70, Selenomethionine- Labeled Crystals Length = 675

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/80 (28%), Positives = 41/80 (51%)
Query: 246 KYRLDISDSHRSVAKLRAAAETCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIG 305
           KY++DI ++ ++  ++  AAE    VLS   ++   VES+ + +D    +SR   E L+ 
Sbjct: 252 KYKIDIRENPKAYNRILTAAEKLKKVLSANTNAPFSVESVXNDVDVSSQLSREELEELVK 311
Query: 306 GLLTSFVQPCMHVLSTLQSS 325
            LL    +P    L+  + S
Sbjct: 312 PLLERVTEPVTKALAQAKLS 331

>pdb|3D2F|A Chain A, Crystal Structure Of A Complex Of Sse1p And Hsp70 Length = 675

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/80 (28%), Positives = 41/80 (51%)
Query: 246 KYRLDISDSHRSVAKLRAAAETCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIG 305
           KY++DI ++ ++  ++  AAE    VLS   ++   VES+ + +D    +SR   E L+ 
Sbjct: 252 KYKIDIRENPKAYNRILTAAEKLKKVLSANTNAPFSVESVMNDVDVSSQLSREELEELVK 311
Query: 306 GLLTSFVQPCMHVLSTLQSS 325
            LL    +P    L+  + S
Sbjct: 312 PLLERVTEPVTKALAQAKLS 331

>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 34/121 (28%), Positives = 52/121 (42%), Gaps = 7/121 (5%)
Query: 26  TDIETIVRETKVDITTNK--DMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNC 83
           +D  + VR + +  + NK      Y  S     R+K +N       I  T   HE  VN 
Sbjct: 162 SDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN---TNFQIRYTFKAHESNVNH 218
Query: 84  VDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPIVITGSED 143
           +     G   Y+ +G  D+ + IWD  N T  Q     G  I+ + F+P+L  V  G++ 
Sbjct: 219 LSISPNGK--YIATGGKDKKLLIWDILNLTYPQREFDAGSTINQIAFNPKLQWVAVGTDQ 276
Query: 144 G 144
           G
Sbjct: 277 G 277

>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane Length = 316

Iteration: 1
 Score = 41.6 bits (96), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 58/127 (45%), Gaps = 15/127 (11%)
Query: 58  VKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQT 117
           VK F+      +++  L GHE  V  V + H      L S + DR V IW  +N T  ++
Sbjct: 37  VKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKS 96
Query: 118 LE--GHGQNISAVCFHPE--LPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSL 173
            E  GH  ++++VC+ P     I+  GS DG++ +           LTY  E  W +  +
Sbjct: 97  HEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISL-----------LTYTGEGQWEVKKI 145
Query: 174 KGSNNVA 180
             ++ + 
Sbjct: 146 NNAHTIG 152

>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380

Iteration: 1
 Score = 41.6 bits (96), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 95  LISGADDRLVKIWDYQ-NKTCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGT 153
            ISG+ D  V++WD +     V+T  GH  +I++V F P+     TGS+DG+ R++   T
Sbjct: 221 FISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRT 280
Query: 154 -HRLEI 158
            H+L++
Sbjct: 281 GHQLQV 286

>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319

Iteration: 1
 Score = 41.6 bits (96), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 33/129 (25%), Positives = 54/129 (41%), Gaps = 10/129 (7%)
Query: 37  VDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCV----DYYHGGDK 92
           VDI     MI   IS    SR K      +    L TL GH   V+ V    +     D 
Sbjct: 113 VDIDKKASMI---IS---GSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDS 166
Query: 93  PYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSG 152
             +IS  +D++VK W+           GH  NI+ +   P+  ++ +  +DG + +W+  
Sbjct: 167 VTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLA 226
Query: 153 THRLEISLT 161
             +   +L+
Sbjct: 227 AKKAMYTLS 235

>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319

Iteration: 1
 Score = 41.6 bits (96), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 33/129 (25%), Positives = 54/129 (41%), Gaps = 10/129 (7%)
Query: 37  VDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCV----DYYHGGDK 92
           VDI     MI   IS    SR K      +    L TL GH   V+ V    +     D 
Sbjct: 113 VDIDKKASMI---IS---GSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDS 166
Query: 93  PYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSG 152
             +IS  +D++VK W+           GH  NI+ +   P+  ++ +  +DG + +W+  
Sbjct: 167 VTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLA 226
Query: 153 THRLEISLT 161
             +   +L+
Sbjct: 227 AKKAMYTLS 235

>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319

Iteration: 1
 Score = 41.6 bits (96), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 33/129 (25%), Positives = 54/129 (41%), Gaps = 10/129 (7%)
Query: 37  VDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCV----DYYHGGDK 92
           VDI     MI   IS    SR K      +    L TL GH   V+ V    +     D 
Sbjct: 113 VDIDKKASMI---IS---GSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDS 166
Query: 93  PYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSG 152
             +IS  +D++VK W+           GH  NI+ +   P+  ++ +  +DG + +W+  
Sbjct: 167 VTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLA 226
Query: 153 THRLEISLT 161
             +   +L+
Sbjct: 227 AKKAMYTLS 235

>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314

Iteration: 1
 Score = 41.6 bits (96), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 33/129 (25%), Positives = 54/129 (41%), Gaps = 10/129 (7%)
Query: 37  VDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCV----DYYHGGDK 92
           VDI     MI   IS    SR K      +    L TL GH   V+ V    +     D 
Sbjct: 113 VDIDKKASMI---IS---GSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDS 166
Query: 93  PYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSG 152
             +IS  +D++VK W+           GH  NI+ +   P+  ++ +  +DG + +W+  
Sbjct: 167 VTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLA 226
Query: 153 THRLEISLT 161
             +   +L+
Sbjct: 227 AKKAMYTLS 235

>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313

Iteration: 1
 Score = 41.6 bits (96), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 33/129 (25%), Positives = 54/129 (41%), Gaps = 10/129 (7%)
Query: 37  VDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCV----DYYHGGDK 92
           VDI     MI   IS    SR K      +    L TL GH   V+ V    +     D 
Sbjct: 107 VDIDKKASMI---IS---GSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDS 160
Query: 93  PYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSG 152
             +IS  +D++VK W+           GH  NI+ +   P+  ++ +  +DG + +W+  
Sbjct: 161 VTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLA 220
Query: 153 THRLEISLT 161
             +   +L+
Sbjct: 221 AKKAMYTLS 229

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	381
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	99.96
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	99.96
3ow8_A	321	WD repeat-containing protein 61; structural genomi	99.95
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	99.95
3ow8_A	321	WD repeat-containing protein 61; structural genomi	99.95
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	99.95
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	99.95
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	99.95
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	99.95
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	99.95
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	99.95
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	99.95
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	99.95
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	99.94
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	99.94
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	99.94
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	99.94
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	99.94
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.94
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	99.94
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	99.94
2pm7_B	297	Protein transport protein SEC13, protein transport	99.94
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	99.94
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	99.94
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	99.94
2pm7_B	297	Protein transport protein SEC13, protein transport	99.93
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	99.93
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	99.93
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	99.93
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	99.93
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.92
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.92
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	99.92
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.92
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.92
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	99.92
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	99.92
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.92
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.92
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	99.92
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	99.92
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.91
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.91
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.91
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.91
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.91
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.91
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.91
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.91
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.91
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.9
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	99.9
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.9
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.9
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.9
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.9
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.9
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.9
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.9
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	99.9
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.9
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.89
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.89
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.89
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.89
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.89
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.89
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.89
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.89
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.89
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.89
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.88
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.88
3jro_A	753	Fusion protein of protein transport protein SEC13	99.88
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.88
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.88
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.88
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.88
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.88
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.88
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.88
3jro_A	753	Fusion protein of protein transport protein SEC13	99.88
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.88
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.88
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.88
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.88
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.88
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.88
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.87
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.87
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.87
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.87
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.87
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.87
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.87
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.87
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.87
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.87
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.86
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.86
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.86
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.86
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.85
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.85
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.85
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.85
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.85
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.84
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.84
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.84
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.84
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.84
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.84
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.83
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.83
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.83
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.83
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.82
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.81
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.8
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.8
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.79
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.78
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.78
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.78
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.75
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.74
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.74
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.71
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.68
3d2f_A	675	Heat shock protein homolog SSE1; nucleotide exchan	99.65
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.61
1yuw_A	554	Heat shock cognate 71 kDa protein; chaperone; 2.60	99.61
4b9q_A	605	Chaperone protein DNAK; HET: ATP; 2.40A {Escherich	99.59
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.58
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.58
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.57
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.57
2kho_A	605	Heat shock protein 70; molecular chaperone, HSP70,	99.56
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.54
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.53
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.53
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.53
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.52
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.52
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.51
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.5
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.5
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.49
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.47
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.46
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.45
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.44
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.42
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.42
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.41
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.4
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.38
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.38
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.36
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.36
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.35
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.34
3i33_A	404	Heat shock-related 70 kDa protein 2; protein-ADP c	99.34
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.33
3qfu_A	394	78 kDa glucose-regulated protein homolog; HSP70, K	99.3
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.29
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.27
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.27
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.23
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.2
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.2
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.19
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.17
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.16
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.13
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.13
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.1
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.07
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.04
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.03
1dkg_D	383	Molecular chaperone DNAK; HSP70, GRPE, nucleotide	99.01
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	98.99
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	98.98
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	98.94
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	98.93
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	98.92
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	98.92
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	98.9
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	98.89
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	98.86
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	98.84
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	98.81
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	98.8
4gni_A	409	Putative heat shock protein; HSP70-type ATPase, AT	98.8
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	98.79
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	98.74
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	98.73
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	98.72
2v7y_A	509	Chaperone protein DNAK; HSP70, heat shock protein,	98.7
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	98.68
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	98.68
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	98.68
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	98.64
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	98.64
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.63
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	98.63
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	98.62
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	98.6
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	98.58
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	98.54
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	98.54
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	98.48
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	98.48
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	98.43
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	98.41
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	98.4
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.39
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.37
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	98.34
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.32
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.31
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	98.29
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	98.29
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	98.28
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.28
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	98.26
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	98.26
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	98.23
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	98.22
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.22
1yuw_A	554	Heat shock cognate 71 kDa protein; chaperone; 2.60	98.21
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.21
3d2f_A	675	Heat shock protein homolog SSE1; nucleotide exchan	98.2
4gni_A	409	Putative heat shock protein; HSP70-type ATPase, AT	98.15
4b9q_A	605	Chaperone protein DNAK; HET: ATP; 2.40A {Escherich	98.14
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.06
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	98.06
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	98.05
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.04
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.02
3i33_A	404	Heat shock-related 70 kDa protein 2; protein-ADP c	97.97
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	97.96
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	97.96
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	97.9
2qe8_A	343	Uncharacterized protein; structural genomics, join	97.88
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	97.88
2v7y_A	509	Chaperone protein DNAK; HSP70, heat shock protein,	97.87
2kho_A	605	Heat shock protein 70; molecular chaperone, HSP70,	97.86
3qfu_A	394	78 kDa glucose-regulated protein homolog; HSP70, K	97.86
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	97.84
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	97.76
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	97.75
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	97.74
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	97.74
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	97.71
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	97.61
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	97.58
1dkg_D	383	Molecular chaperone DNAK; HSP70, GRPE, nucleotide	97.57
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	97.54
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	97.48
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	97.48
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	97.29
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	97.26
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	97.25
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	97.24
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	97.19
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	97.12
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	97.1
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	96.97
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	96.97
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	96.93
1jce_A	344	ROD shape-determining protein MREB; MBL, actin, HS	96.89
3v65_B	386	Low-density lipoprotein receptor-related protein;	96.87
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	96.86
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	96.83
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	96.82
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	96.82
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	96.74
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	96.74
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	96.66
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	96.62
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	96.57
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	96.52
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	96.51
3v65_B	386	Low-density lipoprotein receptor-related protein;	96.5
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	96.46
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	96.46
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	96.43
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	96.41
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	96.41
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	96.22
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	96.2
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	96.14
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	96.14
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	96.02
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	96.01
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	96.0
4a2l_A	795	BT_4663, two-component system sensor histidine kin	95.94
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	95.74
4a2a_A	419	Cell division protein FTSA, putative; cell cycle,	95.63
3kya_A	496	Putative phosphatase; structural genomics, joint c	95.59
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	95.54
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	95.25
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	95.19
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	94.97
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	94.65
2p4o_A	306	Hypothetical protein; putative lactonase, structur	94.43
2p4o_A	306	Hypothetical protein; putative lactonase, structur	94.41
3v9f_A	781	Two-component system sensor histidine kinase/RESP	94.4
4a2l_A	795	BT_4663, two-component system sensor histidine kin	94.12
1jce_A	344	ROD shape-determining protein MREB; MBL, actin, HS	93.99
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	93.87
3v9f_A	781	Two-component system sensor histidine kinase/RESP	93.79
2ych_A	377	Competence protein PILM; cell cycle, type IV pilus	93.63
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	93.58
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	93.46
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	93.38
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	91.96
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	91.81
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	91.7
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	91.09
4a2a_A	419	Cell division protein FTSA, putative; cell cycle,	90.8
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	90.66
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	90.65
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	90.21
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	89.47
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	89.2
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	88.7
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	88.7
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	88.67
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	88.52
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	88.21
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	87.73
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	86.5
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	85.63
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	85.62
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	85.46
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	84.58
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	83.85
3kya_A	496	Putative phosphatase; structural genomics, joint c	83.77
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	82.98
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	82.21
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	81.3
2ych_A	377	Competence protein PILM; cell cycle, type IV pilus	80.27

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=99.96  E-value=1.2e-27  Score=211.88  Aligned_cols=213  Identities=17%  Similarity=0.200  Sum_probs=176.4

Q ss_pred             ceeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEE
Q psy4650          36 KVDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCV  115 (381)
Q Consensus        36 ~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~  115 (381)
                      ...+.++|+ +.++++++.||+|++||+..  ...+..+.+|..+|.++.|+|++.  +|++|+.|++|++||+.+++.+
T Consensus        16 V~~~~fsp~-~~~l~s~~~dg~v~lWd~~~--~~~~~~~~~~~~~v~~~~~~~~~~--~l~s~s~d~~i~vwd~~~~~~~   90 (304)
T 2ynn_A           16 VKGIDFHPT-EPWVLTTLYSGRVELWNYET--QVEVRSIQVTETPVRAGKFIARKN--WIIVGSDDFRIRVFNYNTGEKV   90 (304)
T ss_dssp             EEEEEECSS-SSEEEEEETTSEEEEEETTT--TEEEEEEECCSSCEEEEEEEGGGT--EEEEEETTSEEEEEETTTCCEE
T ss_pred             eEEEEECCC-CCEEEEEcCCCcEEEEECCC--CceeEEeeccCCcEEEEEEeCCCC--EEEEECCCCEEEEEECCCCcEE
Confidence            456777777 56899999999999999974  456788999999999999999876  8999999999999999999999


Q ss_pred             EEeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCC-eeeEEEecCCcceEEEEEcC-CCCEEEEEeCCCeEEEEec
Q psy4650         116 QTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTH-RLEISLTYGLERVWTISSLK-GSNNVAIGYDEGSVLLKVG  193 (381)
Q Consensus       116 ~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~-~~~~~~~~~~~~v~~v~~~~-~~~~l~~~~~dg~v~i~~~  193 (381)
                      ..+.+|.+.|.+++|+|++.++++|+.|++|++||+.++ .....+.+|...|.+++|+| ++..+++|+.||.+++|+-
T Consensus        91 ~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~  170 (304)
T 2ynn_A           91 VDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL  170 (304)
T ss_dssp             EEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEET
T ss_pred             EEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEEC
Confidence            999999999999999999999999999999999999877 55677888999999999999 6789999999999999973


Q ss_pred             CC------------C--------------ceEEEecCCCEEEEEecCceeecccccCCcc---ccccCCceEEeeehHHH
Q psy4650         194 RE------------E--------------PAVSMDVNGCKIIWARHSEVQQANLKTMPEV---FENITAGVVLTLSVHVT  244 (381)
Q Consensus       194 ~~------------~--------------~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~dg~~l~~~~~d~  244 (381)
                      ..            .              .+++-..++...+|+.........+.++...   +.|+|++..+++++.|+
T Consensus       171 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg  250 (304)
T 2ynn_A          171 GQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDG  250 (304)
T ss_dssp             TCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTS
T ss_pred             CCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEEcCCC
Confidence            21            1              1222223334556766655555555444332   57889999999999999


Q ss_pred             HHhccCCCc
Q psy4650         245 IKYRLDISD  253 (381)
Q Consensus       245 ~~~~~d~~~  253 (381)
                      .++.||...
T Consensus       251 ~i~iWd~~~  259 (304)
T 2ynn_A          251 TLKIWNSST  259 (304)
T ss_dssp             CEEEEETTT
T ss_pred             eEEEEECCC
Confidence            999999764

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=99.96  E-value=2.4e-27  Score=218.93  Aligned_cols=211  Identities=19%  Similarity=0.268  Sum_probs=175.3

Q ss_pred             eeeecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEEE
Q psy4650          38 DITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQT  117 (381)
Q Consensus        38 ~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~  117 (381)
                      .+.++++ ..++++|+.||+|++||...  ......+.+|.+.|.+++|+|++.  +|++|+.|++|++||+.++.++..
T Consensus       113 ~~~~~p~-~~~l~s~s~Dg~i~vwd~~~--~~~~~~l~~h~~~V~~v~~~~~~~--~l~sgs~D~~i~iwd~~~~~~~~~  187 (410)
T 1vyh_C          113 RVIFHPV-FSVMVSASEDATIKVWDYET--GDFERTLKGHTDSVQDISFDHSGK--LLASCSADMTIKLWDFQGFECIRT  187 (410)
T ss_dssp             EEEECSS-SSEEEEEESSSCEEEEETTT--CCCCEEECCCSSCEEEEEECTTSS--EEEEEETTSCCCEEETTSSCEEEC
T ss_pred             EEEEcCC-CCEEEEEeCCCeEEEEECCC--CcEEEEEeccCCcEEEEEEcCCCC--EEEEEeCCCeEEEEeCCCCceeEE
Confidence            4556665 56899999999999999874  456788999999999999999876  899999999999999999999999


Q ss_pred             eccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCc
Q psy4650         118 LEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKVGREEP  197 (381)
Q Consensus       118 ~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~~~~~~  197 (381)
                      +.+|...|.+++|+|++..+++|+.|++|++||+.++..+..+.+|...|.++.++|++.++++|+.||.+++|+.....
T Consensus       188 ~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~  267 (410)
T 1vyh_C          188 MHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKE  267 (410)
T ss_dssp             CCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC
T ss_pred             EcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999743211


Q ss_pred             -------------------------------------------eEEEecCCCEEEEEecCceeecccccCCc---ccccc
Q psy4650         198 -------------------------------------------AVSMDVNGCKIIWARHSEVQQANLKTMPE---VFENI  231 (381)
Q Consensus       198 -------------------------------------------~~~~d~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~  231 (381)
                                                                 +++-..++...+|+.........+.++..   .+.|+
T Consensus       268 ~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~  347 (410)
T 1vyh_C          268 CKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFH  347 (410)
T ss_dssp             EEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEC
T ss_pred             eeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEc
Confidence                                                       11122223345566554444444444332   25788


Q ss_pred             CCceEEeeehHHHHHhccCCCc
Q psy4650         232 TAGVVLTLSVHVTIKYRLDISD  253 (381)
Q Consensus       232 ~dg~~l~~~~~d~~~~~~d~~~  253 (381)
                      |+|.++++++.|+.++.||+..
T Consensus       348 ~~g~~l~s~s~D~~i~vwd~~~  369 (410)
T 1vyh_C          348 SGGKFILSCADDKTLRVWDYKN  369 (410)
T ss_dssp             SSSSCEEEEETTTEEEEECCTT
T ss_pred             CCCCEEEEEeCCCeEEEEECCC
Confidence            9999999999999999998854

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=99.95  E-value=1.4e-26  Score=206.55  Aligned_cols=195  Identities=19%  Similarity=0.227  Sum_probs=170.0

Q ss_pred             eeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEE
Q psy4650          37 VDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQ  116 (381)
Q Consensus        37 ~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~  116 (381)
                      ..+.+.++ +.++++++.+|.+++|++..  ......+.+|...|.+++|+|++.  +|++|+.|+.|++||+.+++.+.
T Consensus       126 ~~~~~spd-g~~l~~g~~dg~v~i~~~~~--~~~~~~~~~~~~~v~~~~~spdg~--~lasg~~dg~i~iwd~~~~~~~~  200 (321)
T 3ow8_A          126 WTLAFSPD-SQYLATGTHVGKVNIFGVES--GKKEYSLDTRGKFILSIAYSPDGK--YLASGAIDGIINIFDIATGKLLH  200 (321)
T ss_dssp             CCEEECTT-SSEEEEECTTSEEEEEETTT--CSEEEEEECSSSCEEEEEECTTSS--EEEEEETTSCEEEEETTTTEEEE
T ss_pred             EEEEECCC-CCEEEEEcCCCcEEEEEcCC--CceeEEecCCCceEEEEEECCCCC--EEEEEcCCCeEEEEECCCCcEEE
Confidence            34566666 56899999999999999974  345567888999999999999887  89999999999999999999999


Q ss_pred             EeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCC
Q psy4650         117 TLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKVGREE  196 (381)
Q Consensus       117 ~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~~~~~  196 (381)
                      .+.+|..+|.+++|+|++.+|++|+.|++|++||+.++.....+.+|...|.+++|+|++.++++++.||.+++      
T Consensus       201 ~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~i------  274 (321)
T 3ow8_A          201 TLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKV------  274 (321)
T ss_dssp             EECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEE------
T ss_pred             EEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEE------
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999      


Q ss_pred             ceEEEecCCCEEEEEecCceeecccccCCccccccCCceEEeeehHHHHHhccCCC
Q psy4650         197 PAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSVHVTIKYRLDIS  252 (381)
Q Consensus       197 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~d~~~~~~d~~  252 (381)
                          ||..++.++.....+..  .+    ..++|+|+|..+++++.|+.+++||..
T Consensus       275 ----wd~~~~~~~~~~~~h~~--~v----~~v~~s~~g~~l~s~~~d~~i~vwd~p  320 (321)
T 3ow8_A          275 ----WDVGTRTCVHTFFDHQD--QV----WGVKYNGNGSKIVSVGDDQEIHIYDCP  320 (321)
T ss_dssp             ----EETTTTEEEEEECCCSS--CE----EEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred             ----EeCCCCEEEEEEcCCCC--cE----EEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence                88877777665533211  11    125788999999999999999999863

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=99.95  E-value=5.1e-26  Score=204.68  Aligned_cols=199  Identities=14%  Similarity=0.223  Sum_probs=169.3

Q ss_pred             eeeeecCCCceEEEEEecCCeEEEecCCCcc--ceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeE
Q psy4650          37 VDITTNKDMIEYKISYQESSRVKAFNPIQVA--TLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTC  114 (381)
Q Consensus        37 ~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~--~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~  114 (381)
                      ..+.+.++ +.++++++.|+.+++|++....  ......+.+|.+.|.++.|++++   .+++++.|++|++||+.++..
T Consensus       101 ~~~~~s~~-~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~---~l~s~s~d~~i~~wd~~~~~~  176 (340)
T 1got_B          101 MTCAYAPS-GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN---QIVTSSGDTTCALWDIETGQQ  176 (340)
T ss_dssp             EEEEECTT-SSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETT---EEEEEETTSCEEEEETTTTEE
T ss_pred             EEEEECCC-CCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCC---cEEEEECCCcEEEEECCCCcE
Confidence            34555665 5689999999999999986432  24567788999999999999865   489999999999999999999


Q ss_pred             EEEeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCCCeEEEEecC
Q psy4650         115 VQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKVGR  194 (381)
Q Consensus       115 ~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~~~  194 (381)
                      +..+.+|.+.|.+++|+|++.++++|+.|+.|++||++++.....+.+|...|.+++|+|++.++++|+.||.+++    
T Consensus       177 ~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~i----  252 (340)
T 1got_B          177 TTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRL----  252 (340)
T ss_dssp             EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEE----
T ss_pred             EEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEE----
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999999    


Q ss_pred             CCceEEEecCCCEEEEEecCceeecccccCCccccccCCceEEeeehHHHHHhccCCCc
Q psy4650         195 EEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSVHVTIKYRLDISD  253 (381)
Q Consensus       195 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~d~~~~~~d~~~  253 (381)
                            ||..++..+..........   ... .++|+|+|..+++++.++..+.||...
T Consensus       253 ------wd~~~~~~~~~~~~~~~~~---~v~-~~~~s~~g~~l~~g~~d~~i~vwd~~~  301 (340)
T 1got_B          253 ------FDLRADQELMTYSHDNIIC---GIT-SVSFSKSGRLLLAGYDDFNCNVWDALK  301 (340)
T ss_dssp             ------EETTTTEEEEEECCTTCCS---CEE-EEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred             ------EECCCCcEEEEEccCCccc---ceE-EEEECCCCCEEEEECCCCeEEEEEccc
Confidence                  7777776665443221111   111 157899999999999999999999754

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=99.95  E-value=4.2e-26  Score=203.52  Aligned_cols=155  Identities=19%  Similarity=0.218  Sum_probs=137.6

Q ss_pred             ceeeeecCC---CceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCC
Q psy4650          36 KVDITTNKD---MIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNK  112 (381)
Q Consensus        36 ~~~i~~~~~---~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~  112 (381)
                      .+.+.+.++   ...++++|+.|++|++|+...........+.+|...|.+++|+|++.  ++++++.|++|++||+.++
T Consensus        35 V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~--~l~s~s~D~~i~lWd~~~~  112 (321)
T 3ow8_A           35 IWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLP--IAASSSLDAHIRLWDLENG  112 (321)
T ss_dssp             EEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSS--EEEEEETTSEEEEEETTTT
T ss_pred             EEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCC--EEEEEeCCCcEEEEECCCC
Confidence            355655543   35699999999999999986544445667899999999999999776  8999999999999999999


Q ss_pred             eEEEEeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCCCeEEEEe
Q psy4650         113 TCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKV  192 (381)
Q Consensus       113 ~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~  192 (381)
                      +.+..+..|...+.+++|+|++.++++|+.|+.+++||+.+++....+..+...+.+++|+|+++++++|+.||.+++|+
T Consensus       113 ~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd  192 (321)
T 3ow8_A          113 KQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFD  192 (321)
T ss_dssp             EEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             CEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999954

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=99.95  E-value=2.9e-26  Score=206.39  Aligned_cols=198  Identities=14%  Similarity=0.160  Sum_probs=159.6

Q ss_pred             eeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEE
Q psy4650          37 VDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQ  116 (381)
Q Consensus        37 ~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~  116 (381)
                      ..+.+.++ +.++++|+.|++|++||+..  ..++..+.+|.+.|.+++|+|++.. ++++|+.|++|++||+.++++..
T Consensus       131 ~~v~~spd-g~~l~sgs~d~~i~iwd~~~--~~~~~~~~~h~~~V~~~~~~~~~~~-~l~s~s~D~~v~iwd~~~~~~~~  206 (344)
T 4gqb_B          131 STVSVLSS-GTQAVSGSKDICIKVWDLAQ--QVVLSSYRAHAAQVTCVAASPHKDS-VFLSCSEDNRILLWDTRCPKPAS  206 (344)
T ss_dssp             EEEEECTT-SSEEEEEETTSCEEEEETTT--TEEEEEECCCSSCEEEEEECSSCTT-EEEEEETTSCEEEEETTSSSCEE
T ss_pred             EEEEECCC-CCEEEEEeCCCeEEEEECCC--CcEEEEEcCcCCceEEEEecCCCCC-ceeeeccccccccccccccceee
Confidence            46667776 56999999999999999974  5678899999999999999998763 78999999999999999998887


Q ss_pred             Eec--cCCCCEEEEEEecCC-CEEEEEeCCCCEEEEeCCCCeeeEEEecCCcceEEEEEcCCC-CEEEEEeCCCeEEEEe
Q psy4650         117 TLE--GHGQNISAVCFHPEL-PIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGS-NNVAIGYDEGSVLLKV  192 (381)
Q Consensus       117 ~~~--~~~~~v~~~~~~p~~-~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~~l~~~~~dg~v~i~~  192 (381)
                      .+.  .|...+.+++|+|++ .++++|+.|++|++||+++++.+..+.+|...|++++|+|++ ++|++|+.||.+++  
T Consensus       207 ~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~v--  284 (344)
T 4gqb_B          207 QIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAV--  284 (344)
T ss_dssp             ECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEE--
T ss_pred             eeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEE--
Confidence            774  355678999999955 588999999999999999999999999999999999999997 57999999999999  


Q ss_pred             cCCCceEEEecCCCEEEEEecCceeecccccCCccccccCCce-EEeeehHHHHHhccCCCcCh
Q psy4650         193 GREEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGV-VLTLSVHVTIKYRLDISDSH  255 (381)
Q Consensus       193 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~-~l~~~~~d~~~~~~d~~~~~  255 (381)
                              ||..++.++. ...+  ...+    ..++|+|++. ++++++.|+.+..|++...+
T Consensus       285 --------wd~~~~~~~~-~~~H--~~~V----~~v~~sp~~~~llas~s~D~~v~~w~v~~~~  333 (344)
T 4gqb_B          285 --------LDSSLSELFR-SQAH--RDFV----RDATWSPLNHSLLTTVGWDHQVVHHVVPTEP  333 (344)
T ss_dssp             --------ECTTCCEEEE-ECCC--SSCE----EEEEECSSSTTEEEEEETTSCEEEEECCC--
T ss_pred             --------EECCCCcEEE-EcCC--CCCE----EEEEEeCCCCeEEEEEcCCCeEEEEECCCCC
Confidence                    7776666442 1111  1111    1257889886 56688999999999986543

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=99.95  E-value=4.8e-26  Score=210.17  Aligned_cols=210  Identities=18%  Similarity=0.219  Sum_probs=174.0

Q ss_pred             eeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEE
Q psy4650          37 VDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQ  116 (381)
Q Consensus        37 ~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~  116 (381)
                      ..+.+.++ +.++++|+.|++|++||+..  ...+..+.+|...|.+++|+|++.  ++++|+.|++|++||+.++.++.
T Consensus       154 ~~v~~~~~-~~~l~sgs~D~~i~iwd~~~--~~~~~~~~~h~~~V~~v~~~p~~~--~l~s~s~D~~i~~wd~~~~~~~~  228 (410)
T 1vyh_C          154 QDISFDHS-GKLLASCSADMTIKLWDFQG--FECIRTMHGHDHNVSSVSIMPNGD--HIVSASRDKTIKMWEVQTGYCVK  228 (410)
T ss_dssp             EEEEECTT-SSEEEEEETTSCCCEEETTS--SCEEECCCCCSSCEEEEEECSSSS--EEEEEETTSEEEEEETTTCCEEE
T ss_pred             EEEEEcCC-CCEEEEEeCCCeEEEEeCCC--CceeEEEcCCCCCEEEEEEeCCCC--EEEEEeCCCeEEEEECCCCcEEE
Confidence            45666665 56999999999999999863  456788999999999999999876  89999999999999999999999


Q ss_pred             EeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEecCCcceEEEEEcCC--------------------C
Q psy4650         117 TLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKG--------------------S  176 (381)
Q Consensus       117 ~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~--------------------~  176 (381)
                      .+.+|...|.++.|+|++.++++|+.|++|++||+.++.....+.+|...|.+++|+|+                    |
T Consensus       229 ~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  308 (410)
T 1vyh_C          229 TFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPG  308 (410)
T ss_dssp             EEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------C
T ss_pred             EEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCC
Confidence            99999999999999999999999999999999999999999999999999999999996                    6


Q ss_pred             CEEEEEeCCCeEEEEecCC-----------Cc------------eEEEecCCCEEEEEecCceeecccccCCc---cccc
Q psy4650         177 NNVAIGYDEGSVLLKVGRE-----------EP------------AVSMDVNGCKIIWARHSEVQQANLKTMPE---VFEN  230 (381)
Q Consensus       177 ~~l~~~~~dg~v~i~~~~~-----------~~------------~~~~d~~~~~~~~~~~~~~~~~~~~~~~~---~~~~  230 (381)
                      .++++|+.||.+++|+-..           ..            +++-..++...+|+.........+.++..   .++|
T Consensus       309 ~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~  388 (410)
T 1vyh_C          309 PFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDF  388 (410)
T ss_dssp             CEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEE
T ss_pred             CEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEE
Confidence            7899999999999997332           11            11222223356676655444444444432   2678


Q ss_pred             cCCceEEeeehHHHHHhccCC
Q psy4650         231 ITAGVVLTLSVHVTIKYRLDI  251 (381)
Q Consensus       231 ~~dg~~l~~~~~d~~~~~~d~  251 (381)
                      +|++..+++++.|+....|++
T Consensus       389 ~~~~~~l~sgs~D~~i~vW~~  409 (410)
T 1vyh_C          389 HKTAPYVVTGSVDQTVKVWEC  409 (410)
T ss_dssp             CSSSSCEEEEETTSEEEEEC-
T ss_pred             cCCCCEEEEEeCCCcEEEEeC
Confidence            999999999999999988875

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=99.95  E-value=3.3e-26  Score=206.00  Aligned_cols=199  Identities=19%  Similarity=0.216  Sum_probs=159.9

Q ss_pred             ceeeeecCCCceEEEEEecCCeEEEecCCCcccee--eEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCe
Q psy4650          36 KVDITTNKDMIEYKISYQESSRVKAFNPIQVATLI--LKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKT  113 (381)
Q Consensus        36 ~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~--~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~  113 (381)
                      ..++.+.++  ..+++|+.||+|++||+.......  ...+.+|.+.|.+++|+|++.  +|++|+.|++|++||+.+++
T Consensus        85 v~~~~~s~d--~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~--~l~sgs~d~~i~iwd~~~~~  160 (344)
T 4gqb_B           85 VADLTWVGE--RGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGT--QAVSGSKDICIKVWDLAQQV  160 (344)
T ss_dssp             EEEEEEETT--TEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSS--EEEEEETTSCEEEEETTTTE
T ss_pred             EEEEEEeCC--CeEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCC--EEEEEeCCCeEEEEECCCCc
Confidence            346666665  368899999999999997543322  234669999999999999887  89999999999999999999


Q ss_pred             EEEEeccCCCCEEEEEEecCCC-EEEEEeCCCCEEEEeCCCCeeeEEEe--cCCcceEEEEEcCC-CCEEEEEeCCCeEE
Q psy4650         114 CVQTLEGHGQNISAVCFHPELP-IVITGSEDGSVRVWHSGTHRLEISLT--YGLERVWTISSLKG-SNNVAIGYDEGSVL  189 (381)
Q Consensus       114 ~~~~~~~~~~~v~~~~~~p~~~-~l~s~~~d~~i~vwd~~~~~~~~~~~--~~~~~v~~v~~~~~-~~~l~~~~~dg~v~  189 (381)
                      ++..+.+|.+.|.+++|+|++. ++++|+.|++|++||+++++....+.  .+...+.+++|+|+ +.++++|+.||.|+
T Consensus       161 ~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~  240 (344)
T 4gqb_B          161 VLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVS  240 (344)
T ss_dssp             EEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEE
T ss_pred             EEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEE
Confidence            9999999999999999999885 78999999999999999998887764  35567899999995 57899999999999


Q ss_pred             EEecCCCceEEEecCCCEEEEEecCceeecccccCCccccccCCc-eEEeeehHHHHHhccCCCcC
Q psy4650         190 LKVGREEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAG-VVLTLSVHVTIKYRLDISDS  254 (381)
Q Consensus       190 i~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg-~~l~~~~~d~~~~~~d~~~~  254 (381)
                      +          ||..++.++..+..+..  .+.    .++|+|+| .++++++.|+.+++||....
T Consensus       241 ~----------wd~~~~~~~~~~~~h~~--~v~----~v~fsp~g~~~lasgs~D~~i~vwd~~~~  290 (344)
T 4gqb_B          241 L----------VDTKSTSCVLSSAVHSQ--CVT----GLVFSPHSVPFLASLSEDCSLAVLDSSLS  290 (344)
T ss_dssp             E----------EESCC--CCEEEECCSS--CEE----EEEECSSSSCCEEEEETTSCEEEECTTCC
T ss_pred             E----------EECCCCcEEEEEcCCCC--CEE----EEEEccCCCeEEEEEeCCCeEEEEECCCC
Confidence            9          77777766555433211  111    15788998 57889999999999998654

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=99.95  E-value=7.5e-26  Score=201.75  Aligned_cols=199  Identities=15%  Similarity=0.215  Sum_probs=167.5

Q ss_pred             eeeeecCCCceEEEEEecCCeEEEecCCCcc---ceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCe
Q psy4650          37 VDITTNKDMIEYKISYQESSRVKAFNPIQVA---TLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKT  113 (381)
Q Consensus        37 ~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~---~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~  113 (381)
                      ..+.+.++...++++|+.|++|++|++....   ...+..+.+|...|.+++|+|++.  ++++|+.|++|++||+.+++
T Consensus        21 ~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~--~l~s~s~D~~v~~wd~~~~~   98 (319)
T 3frx_A           21 TSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGA--YALSASWDKTLRLWDVATGE   98 (319)
T ss_dssp             EEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSS--EEEEEETTSEEEEEETTTTE
T ss_pred             EEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCC--EEEEEeCCCEEEEEECCCCC
Confidence            4566677667899999999999999985322   345678999999999999999877  89999999999999999999


Q ss_pred             EEEEeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEecCCcceEEEEEcCC------CCEEEEEeCCCe
Q psy4650         114 CVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKG------SNNVAIGYDEGS  187 (381)
Q Consensus       114 ~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~------~~~l~~~~~dg~  187 (381)
                      .+..+.+|...|.+++|+|++..+++|+.|++|++||+. +..+..+.+|...|.++.+.|.      +..+++++.|+.
T Consensus        99 ~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~  177 (319)
T 3frx_A           99 TYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKM  177 (319)
T ss_dssp             EEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSC
T ss_pred             eeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCE
Confidence            999999999999999999999999999999999999996 4567788889999999999985      448999999999


Q ss_pred             EEEEecCCCceEEEecCCCEEEEEecCceeecccccCCccccccCCceEEeeehHHHHHhccCCCcC
Q psy4650         188 VLLKVGREEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSVHVTIKYRLDISDS  254 (381)
Q Consensus       188 v~i~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~d~~~~~~d~~~~  254 (381)
                      +++          ||..++........+.  ..+    ..++|+|+|..+++++.|+.++.||+...
T Consensus       178 i~~----------wd~~~~~~~~~~~~h~--~~v----~~~~~sp~g~~l~s~~~dg~i~iwd~~~~  228 (319)
T 3frx_A          178 VKA----------WNLNQFQIEADFIGHN--SNI----NTLTASPDGTLIASAGKDGEIMLWNLAAK  228 (319)
T ss_dssp             EEE----------EETTTTEEEEEECCCC--SCE----EEEEECTTSSEEEEEETTCEEEEEETTTT
T ss_pred             EEE----------EECCcchhheeecCCC--CcE----EEEEEcCCCCEEEEEeCCCeEEEEECCCC
Confidence            999          7776666554433221  111    11578899999999999999999998653

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=99.95  E-value=1.1e-25  Score=200.56  Aligned_cols=210  Identities=18%  Similarity=0.268  Sum_probs=166.5

Q ss_pred             eeeecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEEE
Q psy4650          38 DITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQT  117 (381)
Q Consensus        38 ~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~  117 (381)
                      .+.+.++ +.++++++.|++|++||+..  ...+..+.+|.+.|.+++|+|++.  ++++|+.|++|++||+. +.++..
T Consensus        70 ~~~~s~d-g~~l~s~s~D~~v~~wd~~~--~~~~~~~~~h~~~v~~~~~~~~~~--~l~s~s~D~~i~vwd~~-~~~~~~  143 (319)
T 3frx_A           70 DCTLTAD-GAYALSASWDKTLRLWDVAT--GETYQRFVGHKSDVMSVDIDKKAS--MIISGSRDKTIKVWTIK-GQCLAT  143 (319)
T ss_dssp             EEEECTT-SSEEEEEETTSEEEEEETTT--TEEEEEEECCSSCEEEEEECTTSC--EEEEEETTSCEEEEETT-SCEEEE
T ss_pred             EEEECCC-CCEEEEEeCCCEEEEEECCC--CCeeEEEccCCCcEEEEEEcCCCC--EEEEEeCCCeEEEEECC-CCeEEE
Confidence            4555655 56999999999999999974  456788999999999999999876  89999999999999996 456788


Q ss_pred             eccCCCCEEEEEEecCC------CEEEEEeCCCCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCCCeEEEE
Q psy4650         118 LEGHGQNISAVCFHPEL------PIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLK  191 (381)
Q Consensus       118 ~~~~~~~v~~~~~~p~~------~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~  191 (381)
                      +.+|...|.++.|+|..      ..+++++.|+.|++||+.+++....+.+|...|.+++|+|+|+++++|+.||.+++|
T Consensus       144 ~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iw  223 (319)
T 3frx_A          144 LLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLW  223 (319)
T ss_dssp             ECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEE
T ss_pred             EeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Confidence            88999999999999954      489999999999999999999999999999999999999999999999999999998


Q ss_pred             ecCCCce------------EEEec---------CCCEEEEEecCceeecccc-----------cCCccccccCCceEEee
Q psy4650         192 VGREEPA------------VSMDV---------NGCKIIWARHSEVQQANLK-----------TMPEVFENITAGVVLTL  239 (381)
Q Consensus       192 ~~~~~~~------------~~~d~---------~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~dg~~l~~  239 (381)
                      +......            +.|.+         ..+..+|..........+.           .....++|+|||+.|++
T Consensus       224 d~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s  303 (319)
T 3frx_A          224 NLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFA  303 (319)
T ss_dssp             ETTTTEEEEEEECCSCEEEEEECSSSSEEEEEETTEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEE
T ss_pred             ECCCCcEEEEecCCCcEEEEEEcCCCCEEEEEcCCCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEE
Confidence            7543211            11222         1233444443322111111           11112689999999999


Q ss_pred             ehHHHHHhccCCCc
Q psy4650         240 SVHVTIKYRLDISD  253 (381)
Q Consensus       240 ~~~d~~~~~~d~~~  253 (381)
                      ++.|+.+++|++..
T Consensus       304 g~~Dg~i~vWd~~t  317 (319)
T 3frx_A          304 GYTDNVIRVWQVMT  317 (319)
T ss_dssp             EETTSCEEEEEEEE
T ss_pred             eecCceEEEEEEee
Confidence            99999999998753

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=99.95  E-value=1.1e-25  Score=199.76  Aligned_cols=199  Identities=20%  Similarity=0.295  Sum_probs=170.1

Q ss_pred             ceeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEE
Q psy4650          36 KVDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCV  115 (381)
Q Consensus        36 ~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~  115 (381)
                      ...+.+.++ +.++++++.||.+++|+...  ......+.+|...|.+++|+|++.  +|++|+.|+.|++||+.+++.+
T Consensus        26 v~~~~~s~~-~~~l~s~~~dg~i~iw~~~~--~~~~~~~~~h~~~v~~~~~~~~~~--~l~s~~~d~~i~vwd~~~~~~~  100 (312)
T 4ery_A           26 VSSVKFSPN-GEWLASSSADKLIKIWGAYD--GKFEKTISGHKLGISDVAWSSDSN--LLVSASDDKTLKIWDVSSGKCL  100 (312)
T ss_dssp             EEEEEECTT-SSEEEEEETTSCEEEEETTT--CCEEEEECCCSSCEEEEEECTTSS--EEEEEETTSEEEEEETTTCCEE
T ss_pred             EEEEEECCC-CCEEEEeeCCCeEEEEeCCC--cccchhhccCCCceEEEEEcCCCC--EEEEECCCCEEEEEECCCCcEE
Confidence            345666766 56899999999999999864  456678899999999999999876  8999999999999999999999


Q ss_pred             EEeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCC
Q psy4650         116 QTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKVGRE  195 (381)
Q Consensus       116 ~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~~~~  195 (381)
                      ..+.+|...|.+++|+|++.++++|+.|+.|++||+.+++.+..+..|...+.+++|+|++.++++++.||.+++     
T Consensus       101 ~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~-----  175 (312)
T 4ery_A          101 KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI-----  175 (312)
T ss_dssp             EEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEE-----
T ss_pred             EEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEE-----
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999999     


Q ss_pred             CceEEEecCCCEEEEEecCceeecccccCCccccccCCceEEeeehHHHHHhccCCCcC
Q psy4650         196 EPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSVHVTIKYRLDISDS  254 (381)
Q Consensus       196 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~d~~~~~~d~~~~  254 (381)
                           ||..++..+........     .....+.|+|+|..+++++.++..+.||+...
T Consensus       176 -----wd~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~  224 (312)
T 4ery_A          176 -----WDTASGQCLKTLIDDDN-----PPVSFVKFSPNGKYILAATLDNTLKLWDYSKG  224 (312)
T ss_dssp             -----EETTTCCEEEEECCSSC-----CCEEEEEECTTSSEEEEEETTTEEEEEETTTT
T ss_pred             -----EECCCCceeeEEeccCC-----CceEEEEECCCCCEEEEEcCCCeEEEEECCCC
Confidence                 77766655544321110     00111568899999999999999999998653

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=99.95  E-value=3.7e-26  Score=206.00  Aligned_cols=198  Identities=19%  Similarity=0.171  Sum_probs=160.0

Q ss_pred             ceeeeecCCCceEEEEEecCCeEEEecCCCccceeeE-eeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCC--
Q psy4650          36 KVDITTNKDMIEYKISYQESSRVKAFNPIQVATLILK-TLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNK--  112 (381)
Q Consensus        36 ~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~-~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~--  112 (381)
                      .+.+.++++ +.++++|+.|++|++|+.......... ...+|.+.|.+++|+|++.  +|++|+.|+++++|+...+  
T Consensus        19 v~~l~~sp~-g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~--~l~s~s~D~~v~iw~~~~~~~   95 (345)
T 3fm0_A           19 CWFLAWNPA-GTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGN--YLASASFDATTCIWKKNQDDF   95 (345)
T ss_dssp             EEEEEECTT-SSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSS--EEEEEETTSCEEEEEECCC-E
T ss_pred             EEEEEECCC-CCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCC--EEEEEECCCcEEEEEccCCCe
Confidence            456777776 569999999999999998643222222 3468999999999999876  8999999999999999876  


Q ss_pred             eEEEEeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCe---eeEEEecCCcceEEEEEcCCCCEEEEEeCCCeEE
Q psy4650         113 TCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHR---LEISLTYGLERVWTISSLKGSNNVAIGYDEGSVL  189 (381)
Q Consensus       113 ~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~---~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~  189 (381)
                      .++..+.+|...|.+++|+|++.+|++|+.|++|++||+.++.   .+..+..|...|.+++|+|++.++++|+.|+.++
T Consensus        96 ~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~  175 (345)
T 3fm0_A           96 ECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVK  175 (345)
T ss_dssp             EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEE
T ss_pred             EEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEE
Confidence            4577889999999999999999999999999999999998763   4566788999999999999999999999999999


Q ss_pred             EEecCCCceEEEecCCCEEE--EEecCceeecccccCCccccccCCceEEeeehHHHHHhccCCC
Q psy4650         190 LKVGREEPAVSMDVNGCKII--WARHSEVQQANLKTMPEVFENITAGVVLTLSVHVTIKYRLDIS  252 (381)
Q Consensus       190 i~~~~~~~~~~~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~d~~~~~~d~~  252 (381)
                      +          ||..++...  .....+  ...+    ..++|+|+|..|++++.|+.+.+|+..
T Consensus       176 ~----------w~~~~~~~~~~~~~~~h--~~~v----~~l~~sp~g~~l~s~s~D~~v~iW~~~  224 (345)
T 3fm0_A          176 L----------YREEEDDWVCCATLEGH--ESTV----WSLAFDPSGQRLASCSDDRTVRIWRQY  224 (345)
T ss_dssp             E----------EEEETTEEEEEEEECCC--SSCE----EEEEECTTSSEEEEEETTSCEEEEEEE
T ss_pred             E----------EEecCCCEEEEEEecCC--CCce----EEEEECCCCCEEEEEeCCCeEEEeccc
Confidence            9          555444322  111111  1111    125789999999999999999999863

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=99.95  E-value=1.6e-25  Score=201.79  Aligned_cols=218  Identities=15%  Similarity=0.179  Sum_probs=168.6

Q ss_pred             ceeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCC---
Q psy4650          36 KVDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNK---  112 (381)
Q Consensus        36 ~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~---  112 (381)
                      ...+.+.++ +.++++++.|+++++|+........+..+.+|.+.|.+++|+|++.  +|++|+.|++|++||+.++   
T Consensus        64 v~~~~~sp~-g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~--~l~s~s~D~~v~iwd~~~~~~~  140 (345)
T 3fm0_A           64 VRKVAWSPC-GNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGN--LLATCSRDKSVWVWEVDEEDEY  140 (345)
T ss_dssp             EEEEEECTT-SSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSS--EEEEEETTSCEEEEEECTTSCE
T ss_pred             EEEEEECCC-CCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCC--EEEEEECCCeEEEEECCCCCCe
Confidence            345667776 5699999999999999987544566788999999999999999876  8999999999999999876   


Q ss_pred             eEEEEeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCe--eeEEEecCCcceEEEEEcCCCCEEEEEeCCCeEEE
Q psy4650         113 TCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHR--LEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLL  190 (381)
Q Consensus       113 ~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~--~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i  190 (381)
                      .++..+.+|...|.+++|+|++.++++|+.|++|++||..++.  ....+.+|...|.+++|+|+|++|++|+.||.+++
T Consensus       141 ~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~i  220 (345)
T 3fm0_A          141 ECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRI  220 (345)
T ss_dssp             EEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred             EEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEE
Confidence            3466788999999999999999999999999999999998875  44678889999999999999999999999999999


Q ss_pred             EecC---------------------------CC------------ceEEEecCCCEEEEEecCceee---------cccc
Q psy4650         191 KVGR---------------------------EE------------PAVSMDVNGCKIIWARHSEVQQ---------ANLK  222 (381)
Q Consensus       191 ~~~~---------------------------~~------------~~~~~d~~~~~~~~~~~~~~~~---------~~~~  222 (381)
                      |...                           ..            .+.+-..+....+|........         ....
T Consensus       221 W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~  300 (345)
T 3fm0_A          221 WRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQ  300 (345)
T ss_dssp             EEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETT
T ss_pred             eccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecc
Confidence            9621                           01            1112222344556665432110         0011


Q ss_pred             cCCc---cccccCCc-eEEeeehHHHHHhccCCCcChh
Q psy4650         223 TMPE---VFENITAG-VVLTLSVHVTIKYRLDISDSHR  256 (381)
Q Consensus       223 ~~~~---~~~~~~dg-~~l~~~~~d~~~~~~d~~~~~~  256 (381)
                      ++..   .++|+|++ ..+++++.|+.+..|++....+
T Consensus       301 ~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~  338 (345)
T 3fm0_A          301 AHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEG  338 (345)
T ss_dssp             SSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC---
T ss_pred             cccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCC
Confidence            2221   16788987 4899999999999999876544

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=99.94  E-value=2.1e-25  Score=201.80  Aligned_cols=201  Identities=14%  Similarity=0.194  Sum_probs=164.9

Q ss_pred             eeeeecCCCceEEEEEecCCeEEEecCCCccc----------------------------------------------ee
Q psy4650          37 VDITTNKDMIEYKISYQESSRVKAFNPIQVAT----------------------------------------------LI   70 (381)
Q Consensus        37 ~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~----------------------------------------------~~   70 (381)
                      +.+.+.++ +.++++|+.||+|++||......                                              ..
T Consensus        68 ~~~~~s~d-~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~  146 (354)
T 2pbi_B           68 LCMDWCKD-KRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAK  146 (354)
T ss_dssp             EEEEECTT-SSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCSGGG
T ss_pred             EEEEECCC-CCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEecccccccccc
Confidence            45666666 46899999999999999643211                                              12


Q ss_pred             eEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEEEeccCCCCEEEEEEec--CCCEEEEEeCCCCEEE
Q psy4650          71 LKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHP--ELPIVITGSEDGSVRV  148 (381)
Q Consensus        71 ~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~p--~~~~l~s~~~d~~i~v  148 (381)
                      ...+.+|.+.|.++.|+|++.  .|++|+.|++|++||+.+++.+..+.+|...|.+++|+|  ++..+++|+.|+.|++
T Consensus       147 ~~~~~~h~~~v~~~~~~~~~~--~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~  224 (354)
T 2pbi_B          147 KKSVAMHTNYLSACSFTNSDM--QILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMV  224 (354)
T ss_dssp             CEEEEECSSCEEEEEECSSSS--EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEE
T ss_pred             ceeeeccCCcEEEEEEeCCCC--EEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEE
Confidence            234567899999999999776  799999999999999999999999999999999999988  4679999999999999


Q ss_pred             EeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCceEEEecCCCEEEEEecCceeecccccCCccc
Q psy4650         149 WHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKVGREEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVF  228 (381)
Q Consensus       149 wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (381)
                      ||+++++.+..+.+|...|.+++|+|++..+++|+.|+.+++          ||..++..+.....+...   .+.. .+
T Consensus       225 wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~l----------wd~~~~~~~~~~~~~~~~---~~~~-~~  290 (354)
T 2pbi_B          225 WDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRL----------YDLRADREVAIYSKESII---FGAS-SV  290 (354)
T ss_dssp             EETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEE----------EETTTTEEEEEECCTTCC---SCEE-EE
T ss_pred             EECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEE----------EECCCCcEEEEEcCCCcc---ccee-EE
Confidence            999999999999999999999999999999999999999999          777666554333222111   1111 25


Q ss_pred             cccCCceEEeeehHHHHHhccCCCcC
Q psy4650         229 ENITAGVVLTLSVHVTIKYRLDISDS  254 (381)
Q Consensus       229 ~~~~dg~~l~~~~~d~~~~~~d~~~~  254 (381)
                      +|+|+|..+++++.++..+.||+...
T Consensus       291 ~~s~~g~~l~~g~~d~~i~vwd~~~~  316 (354)
T 2pbi_B          291 DFSLSGRLLFAGYNDYTINVWDVLKG  316 (354)
T ss_dssp             EECTTSSEEEEEETTSCEEEEETTTC
T ss_pred             EEeCCCCEEEEEECCCcEEEEECCCC
Confidence            78899999999999999999998543

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=99.94  E-value=1.5e-25  Score=201.69  Aligned_cols=183  Identities=18%  Similarity=0.266  Sum_probs=156.0

Q ss_pred             EEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEEEeccCCCCEEE
Q psy4650          48 YKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISA  127 (381)
Q Consensus        48 ~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~  127 (381)
                      .+++++.|++|++||+..  ...+..+.+|.+.|.+++|+|++.  ++++|+.|++|++||+.++.+...+.+|...|.+
T Consensus       156 ~l~s~s~d~~i~~wd~~~--~~~~~~~~~h~~~v~~~~~~~~~~--~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~  231 (340)
T 1got_B          156 QIVTSSGDTTCALWDIET--GQQTTTFTGHTGDVMSLSLAPDTR--LFVSGACDASAKLWDVREGMCRQTFTGHESDINA  231 (340)
T ss_dssp             EEEEEETTSCEEEEETTT--TEEEEEECCCSSCEEEEEECTTSS--EEEEEETTSCEEEEETTTCSEEEEECCCSSCEEE
T ss_pred             cEEEEECCCcEEEEECCC--CcEEEEEcCCCCceEEEEECCCCC--EEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEE
Confidence            488999999999999974  456788999999999999999776  8999999999999999999999999999999999


Q ss_pred             EEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEecC--CcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCceEEEecCC
Q psy4650         128 VCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYG--LERVWTISSLKGSNNVAIGYDEGSVLLKVGREEPAVSMDVNG  205 (381)
Q Consensus       128 ~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~--~~~v~~v~~~~~~~~l~~~~~dg~v~i~~~~~~~~~~~d~~~  205 (381)
                      ++|+|++..+++|+.|++|++||+++++.+..+...  ...|.+++|+|+|.++++|+.||.+++          ||..+
T Consensus       232 v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~v----------wd~~~  301 (340)
T 1got_B          232 ICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNV----------WDALK  301 (340)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEE----------EETTT
T ss_pred             EEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEE----------EEccc
Confidence            999999999999999999999999999887776532  347999999999999999999999999          66666


Q ss_pred             CEEEEEecCceeecccccCCccccccCCceEEeeehHHHHHhccC
Q psy4650         206 CKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSVHVTIKYRLD  250 (381)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~d~~~~~~d  250 (381)
                      +..+.....+..  .+.    .++|+|+|..+++++.|+.+++|+
T Consensus       302 ~~~~~~~~~h~~--~v~----~~~~s~dg~~l~s~s~D~~i~iWd  340 (340)
T 1got_B          302 ADRAGVLAGHDN--RVS----CLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             CCEEEEEECCSS--CEE----EEEECTTSSCEEEEETTSCEEEEC
T ss_pred             CcEeeEeecCCC--cEE----EEEEcCCCCEEEEEcCCccEEecC
Confidence            555444332211  111    157889999999999998888875

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=99.94  E-value=1.9e-25  Score=202.03  Aligned_cols=195  Identities=14%  Similarity=0.208  Sum_probs=161.5

Q ss_pred             eeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEE
Q psy4650          37 VDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQ  116 (381)
Q Consensus        37 ~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~  116 (381)
                      ..+.+.++ ...+++++.|++|++||+..  ...+..+.+|...|.++.|+|+....+|++|+.|++|++||+.++.++.
T Consensus       158 ~~~~~~~~-~~~l~t~s~D~~v~lwd~~~--~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~  234 (354)
T 2pbi_B          158 SACSFTNS-DMQILTASGDGTCALWDVES--GQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQ  234 (354)
T ss_dssp             EEEEECSS-SSEEEEEETTSEEEEEETTT--CCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEE
T ss_pred             EEEEEeCC-CCEEEEEeCCCcEEEEeCCC--CeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEE
Confidence            34555555 45889999999999999974  4567889999999999999986544589999999999999999999999


Q ss_pred             EeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEecC--CcceEEEEEcCCCCEEEEEeCCCeEEEEecC
Q psy4650         117 TLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYG--LERVWTISSLKGSNNVAIGYDEGSVLLKVGR  194 (381)
Q Consensus       117 ~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~--~~~v~~v~~~~~~~~l~~~~~dg~v~i~~~~  194 (381)
                      .+.+|...|.+++|+|++..+++|+.|++|++||++++..+..+..+  ...+.+++|+|+|.++++|+.|+.+++    
T Consensus       235 ~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~v----  310 (354)
T 2pbi_B          235 AFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINV----  310 (354)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEE----
T ss_pred             EecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEE----
Confidence            99999999999999999999999999999999999998877766543  347899999999999999999999999    


Q ss_pred             CCceEEEecCCCEEEEEecCceeecccccCCccccccCCceEEeeehHHHHHhccC
Q psy4650         195 EEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSVHVTIKYRLD  250 (381)
Q Consensus       195 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~d~~~~~~d  250 (381)
                            ||..++..+.....+.  ..+    ..++|+|||..+++++.|+..++|+
T Consensus       311 ------wd~~~~~~~~~l~~h~--~~v----~~l~~spdg~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          311 ------WDVLKGSRVSILFGHE--NRV----STLRVSPDGTAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             ------EETTTCSEEEEECCCS--SCE----EEEEECTTSSCEEEEETTSEEEEEC
T ss_pred             ------EECCCCceEEEEECCC--CcE----EEEEECCCCCEEEEEcCCCCEEecC
Confidence                  6766655443332211  111    1157889999999999998887774

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=99.94  E-value=3.8e-25  Score=214.54  Aligned_cols=216  Identities=16%  Similarity=0.154  Sum_probs=165.4

Q ss_pred             eeeeecCCCceEEEEEecCCeEEEecCCCccceeeEe-------------------------------------------
Q psy4650          37 VDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKT-------------------------------------------   73 (381)
Q Consensus        37 ~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~-------------------------------------------   73 (381)
                      ..+.+.|+ +.++++|+.|++|++||+..........                                           
T Consensus        63 ~~~~~spd-g~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~~~~  141 (611)
T 1nr0_A           63 TVAKTSPS-GYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNG  141 (611)
T ss_dssp             EEEEECTT-SSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCB
T ss_pred             EEEEECCC-CcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeCCCCcc
Confidence            45666776 6799999999999999985322222222                                           


Q ss_pred             -eccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEEEeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCC
Q psy4650          74 -LYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSG  152 (381)
Q Consensus        74 -l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~  152 (381)
                       +.+|.+.|.+++|+|++. ..|++|+.|++|++||..+++....+.+|...|.+++|+|++.++++|+.|++|++||+.
T Consensus       142 ~l~gh~~~v~~v~f~p~~~-~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~  220 (611)
T 1nr0_A          142 NLTGQARAMNSVDFKPSRP-FRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGV  220 (611)
T ss_dssp             CCCCCSSCEEEEEECSSSS-CEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred             eecCCCCCceEEEECCCCC-eEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECC
Confidence             345666677777776554 258999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCeeeEEEe-------cCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCce------------------------EEE
Q psy4650         153 THRLEISLT-------YGLERVWTISSLKGSNNVAIGYDEGSVLLKVGREEPA------------------------VSM  201 (381)
Q Consensus       153 ~~~~~~~~~-------~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~~~~~~~------------------------~~~  201 (381)
                      +++....+.       +|...|.+++|+|+|.+|++++.|+.+++|+......                        ++.
T Consensus       221 ~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~  300 (611)
T 1nr0_A          221 DGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSI  300 (611)
T ss_dssp             TCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEE
T ss_pred             CCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEE
Confidence            999888874       7999999999999999999999999999987543211                        111


Q ss_pred             ecCCCEEEEEecCceeecccccCCc---cccccCCceEEeeehHHHHHhccCCCcC
Q psy4650         202 DVNGCKIIWARHSEVQQANLKTMPE---VFENITAGVVLTLSVHVTIKYRLDISDS  254 (381)
Q Consensus       202 d~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~dg~~l~~~~~d~~~~~~d~~~~  254 (381)
                      ..++...+|..........+.++..   .++|+|||..+++++.|+.++.|++...
T Consensus       301 s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~  356 (611)
T 1nr0_A          301 SANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTG  356 (611)
T ss_dssp             ETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC
T ss_pred             eCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCC
Confidence            2223334444333222222333322   2678999999999999999999998643

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=99.94  E-value=4.9e-25  Score=198.49  Aligned_cols=192  Identities=15%  Similarity=0.187  Sum_probs=155.6

Q ss_pred             cCCCceEEEEEecCCeEEEecCCCcc-----ceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEE
Q psy4650          42 NKDMIEYKISYQESSRVKAFNPIQVA-----TLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQ  116 (381)
Q Consensus        42 ~~~~~~~~~s~~~d~~v~i~~~~~~~-----~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~  116 (381)
                      .+..+.++++|+.|++|++|++....     ......+.+|...|.+++|+|++.  ++++|+.|++|++||+.+++.+.
T Consensus        35 ~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~--~l~s~s~D~~v~lwd~~~~~~~~  112 (343)
T 2xzm_R           35 ENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENC--FAISSSWDKTLRLWDLRTGTTYK  112 (343)
T ss_dssp             TTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTT--EEEEEETTSEEEEEETTSSCEEE
T ss_pred             cCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCC--EEEEEcCCCcEEEEECCCCcEEE
Confidence            34346799999999999999986422     245677899999999999999876  89999999999999999999999


Q ss_pred             EeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEe---cCCcceEEEEEcCCC----------CEEEEEe
Q psy4650         117 TLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLT---YGLERVWTISSLKGS----------NNVAIGY  183 (381)
Q Consensus       117 ~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~---~~~~~v~~v~~~~~~----------~~l~~~~  183 (381)
                      .+.+|...|.+++|+|++..+++++.|++|++||+.... .....   .|...|.+++|+|++          .++++++
T Consensus       113 ~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~  191 (343)
T 2xzm_R          113 RFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGEC-KFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVG  191 (343)
T ss_dssp             EEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCE-EEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEE
T ss_pred             EEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCc-eeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEc
Confidence            999999999999999999999999999999999998443 33333   578889999999987          7899999


Q ss_pred             CCCeEEEEecCCCceEEEecCCCEEEEEecCceeecccccCCccccccCCceEEeeehHHHHHhccCCCc
Q psy4650         184 DEGSVLLKVGREEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSVHVTIKYRLDISD  253 (381)
Q Consensus       184 ~dg~v~i~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~d~~~~~~d~~~  253 (381)
                      .||.+++          ||. .+........+.  ..+    ..++|+|+|.++++++.|+..+.||+..
T Consensus       192 ~d~~i~i----------wd~-~~~~~~~~~~h~--~~v----~~~~~s~~g~~l~sgs~dg~v~iwd~~~  244 (343)
T 2xzm_R          192 WDGRLKV----------WNT-NFQIRYTFKAHE--SNV----NHLSISPNGKYIATGGKDKKLLIWDILN  244 (343)
T ss_dssp             TTSEEEE----------EET-TTEEEEEEECCS--SCE----EEEEECTTSSEEEEEETTCEEEEEESSC
T ss_pred             CCCEEEE----------EcC-CCceeEEEcCcc--ccc----eEEEECCCCCEEEEEcCCCeEEEEECCC
Confidence            9999999          553 233222222111  011    1157889999999999999999999843

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.94  E-value=8e-25  Score=196.20  Aligned_cols=217  Identities=19%  Similarity=0.222  Sum_probs=167.0

Q ss_pred             ceeeeecCCCceEEEEEecCCeEEEecCCCcc---ceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCC
Q psy4650          36 KVDITTNKDMIEYKISYQESSRVKAFNPIQVA---TLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNK  112 (381)
Q Consensus        36 ~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~---~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~  112 (381)
                      ..++.+.|+.+.++++|+.|++|++||+....   ......+.+|.+.|.++.|+|++.  +|++|+.|+.|++|+....
T Consensus        41 V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~--~l~s~~~d~~i~~~~~~~~  118 (340)
T 4aow_A           41 VTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQ--FALSGSWDGTLRLWDLTTG  118 (340)
T ss_dssp             EEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSS--EEEEEETTSEEEEEETTTT
T ss_pred             EEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCC--EEEEEcccccceEEeeccc
Confidence            35677788777899999999999999986432   345678899999999999999876  7889999988888887652


Q ss_pred             eE-------------------------------------------EEEeccCCCCEEEEEEecCCC--EEEEEeCCCCEE
Q psy4650         113 TC-------------------------------------------VQTLEGHGQNISAVCFHPELP--IVITGSEDGSVR  147 (381)
Q Consensus       113 ~~-------------------------------------------~~~~~~~~~~v~~~~~~p~~~--~l~s~~~d~~i~  147 (381)
                      ..                                           .....+|...+.+++|++++.  .+++++.|+.|+
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~  198 (340)
T 4aow_A          119 TTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVK  198 (340)
T ss_dssp             EEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEE
T ss_pred             ceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEE
Confidence            11                                           112346778899999988654  788999999999


Q ss_pred             EEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCCCeEEEEecC------------------------------CCc
Q psy4650         148 VWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKVGR------------------------------EEP  197 (381)
Q Consensus       148 vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~~~------------------------------~~~  197 (381)
                      +||+.+++....+.+|...|.+++|+|+++++++|+.||.+++|+..                              +..
T Consensus       199 i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~  278 (340)
T 4aow_A          199 VWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPS  278 (340)
T ss_dssp             EEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECSSCEEEEEECSSSSEEEEEETTE
T ss_pred             EEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCCceEEeeecCCCCceeeccCCCE
Confidence            99999999999999999999999999999999999999999998732                              234


Q ss_pred             eEEEecCCCEEEEEecCceeecccccCCc---cccccCCceEEeeehHHHHHhccCCCcC
Q psy4650         198 AVSMDVNGCKIIWARHSEVQQANLKTMPE---VFENITAGVVLTLSVHVTIKYRLDISDS  254 (381)
Q Consensus       198 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~dg~~l~~~~~d~~~~~~d~~~~  254 (381)
                      +..||..++..+.....+.......++..   .++|+|||.+|++++.|+.+++|++...
T Consensus       279 i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tG  338 (340)
T 4aow_A          279 IKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIG  338 (340)
T ss_dssp             EEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC-
T ss_pred             EEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCc
Confidence            44555555555554443332222222222   1678999999999999999999998754

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=99.94  E-value=1e-24  Score=195.32  Aligned_cols=214  Identities=18%  Similarity=0.239  Sum_probs=156.6

Q ss_pred             ceeeeecCCCceEEEEEecCCeEEEecCCCc-----cceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECC
Q psy4650          36 KVDITTNKDMIEYKISYQESSRVKAFNPIQV-----ATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQ  110 (381)
Q Consensus        36 ~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~-----~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~  110 (381)
                      ...+.+.++ +.++++++.|++|++|++...     ....+..+.+|.+.|.+++|+|++.  +|++|+.|++|++||+.
T Consensus        61 v~~v~~sp~-~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~--~las~s~D~~v~iwd~~  137 (330)
T 2hes_X           61 IRSVAWRPH-TSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGY--YLATCSRDKSVWIWETD  137 (330)
T ss_dssp             EEEEEECTT-SSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSC--EEEEEETTSCEEEEECC
T ss_pred             EEEEEECCC-CCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCC--EEEEEeCCCEEEEEecc
Confidence            456777776 569999999999999998431     2345678899999999999999876  89999999999999994


Q ss_pred             C----CeEEEEeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCC--eeeEEEecCCcceEEEEEcCC--CCEEEEE
Q psy4650         111 N----KTCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTH--RLEISLTYGLERVWTISSLKG--SNNVAIG  182 (381)
Q Consensus       111 ~----~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~--~~~~~~~~~~~~v~~v~~~~~--~~~l~~~  182 (381)
                      .    .+++..+.+|...|.+++|+|++.+|++|+.|++|++||..++  .++..+.+|...|.+++|+|+  +..+++|
T Consensus       138 ~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~  217 (330)
T 2hes_X          138 ESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSG  217 (330)
T ss_dssp             TTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEE
T ss_pred             CCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEE
Confidence            3    2567788999999999999999999999999999999999876  577888999999999999998  7789999


Q ss_pred             eCCCeEEEEecCC--------------------Cc-----------eEEEecCCCEEEEEecCce--ee-cccccCCc--
Q psy4650         183 YDEGSVLLKVGRE--------------------EP-----------AVSMDVNGCKIIWARHSEV--QQ-ANLKTMPE--  226 (381)
Q Consensus       183 ~~dg~v~i~~~~~--------------------~~-----------~~~~d~~~~~~~~~~~~~~--~~-~~~~~~~~--  226 (381)
                      +.|+.+++|+...                    ..           +++-..++...+|+.....  .. ....++..  
T Consensus       218 s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~  297 (330)
T 2hes_X          218 SDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNGLIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYE  297 (330)
T ss_dssp             ETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTSCEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSC
T ss_pred             eCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCCEEEEEeCCCEEEEEEcCCCceEEEeccccccccce
Confidence            9999999985311                    11           2222233445666654321  11 11112221  


Q ss_pred             --cccccC--CceEEeeehHHHHHhccCCC
Q psy4650         227 --VFENIT--AGVVLTLSVHVTIKYRLDIS  252 (381)
Q Consensus       227 --~~~~~~--dg~~l~~~~~d~~~~~~d~~  252 (381)
                        .++|+|  ++..|++++.|+.+++|++.
T Consensus       298 v~~v~~~~~~~~~~las~s~Dg~v~~W~~~  327 (330)
T 2hes_X          298 INVVKWLELNGKTILATGGDDGIVNFWSLE  327 (330)
T ss_dssp             EEEEEEC-----CCEEEEETTSEEEEEEC-
T ss_pred             EEEEEEecCCCceEEEEecCCCcEEEEEec
Confidence              145666  67788888888888888764

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=99.94  E-value=7.2e-25  Score=196.34  Aligned_cols=196  Identities=13%  Similarity=0.096  Sum_probs=150.1

Q ss_pred             eeeeecCCCceEEEEEecCCeEEEecCCCccceeeEee-cc-ccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCC---
Q psy4650          37 VDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTL-YG-HEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQN---  111 (381)
Q Consensus        37 ~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l-~~-h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~---  111 (381)
                      +.+.+.++   ++++++.|++|++|++..........+ .+ |.+.|.+++|+|++.  +|++|+.|++|++||...   
T Consensus        18 ~~~~~s~~---~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~--~las~s~D~~v~iw~~~~~~~   92 (330)
T 2hes_X           18 WSFDFSQG---ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTS--LLAAGSFDSTVSIWAKEESAD   92 (330)
T ss_dssp             EEEEEETT---EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSS--EEEEEETTSCEEEEEC-----
T ss_pred             eeeccCCC---EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCC--EEEEEeCCCcEEEEEcccCcC
Confidence            34555554   899999999999999865333445555 45 999999999999876  899999999999999853   


Q ss_pred             ----CeEEEEeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCC----CeeeEEEecCCcceEEEEEcCCCCEEEEEe
Q psy4650         112 ----KTCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGT----HRLEISLTYGLERVWTISSLKGSNNVAIGY  183 (381)
Q Consensus       112 ----~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~----~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~  183 (381)
                          ...+..+.+|...|.+++|+|++.+|++|+.|++|++||+..    .+.+..+.+|...|.+++|+|++.+|++|+
T Consensus        93 ~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s  172 (330)
T 2hes_X           93 RTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSS  172 (330)
T ss_dssp             --CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEE
T ss_pred             ccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEc
Confidence                356778899999999999999999999999999999999943    246677888999999999999999999999


Q ss_pred             CCCeEEEEecCCCceEEEecCCC--EEEEEecCceeecccccCCccccccCC--ceEEeeehHHHHHhccCCCc
Q psy4650         184 DEGSVLLKVGREEPAVSMDVNGC--KIIWARHSEVQQANLKTMPEVFENITA--GVVLTLSVHVTIKYRLDISD  253 (381)
Q Consensus       184 ~dg~v~i~~~~~~~~~~~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~d--g~~l~~~~~d~~~~~~d~~~  253 (381)
                      .|+.+++          ||..++  .++..+..+.  ..+    ..++|+|+  +..+++++.|+....|++..
T Consensus       173 ~D~~i~i----------W~~~~~~~~~~~~~~~h~--~~v----~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~  230 (330)
T 2hes_X          173 YDDTVRI----------WKDYDDDWECVAVLNGHE--GTV----WSSDFDKTEGVFRLCSGSDDSTVRVWKYMG  230 (330)
T ss_dssp             TTSCEEE----------EEEETTEEEEEEEECCCS--SCE----EEEEECCSSSSCEEEEEETTSCEEEEEEEE
T ss_pred             CCCeEEE----------EECCCCCeeEEEEccCCC--CcE----EEEEecCCCCeeEEEEEeCCCeEEEEEecC
Confidence            9999999          544333  2222222111  011    11456777  77899999999999998754

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=99.94  E-value=2.2e-25  Score=196.65  Aligned_cols=202  Identities=18%  Similarity=0.136  Sum_probs=158.8

Q ss_pred             ceeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCe--
Q psy4650          36 KVDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKT--  113 (381)
Q Consensus        36 ~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~--  113 (381)
                      ..++.++++ +.++++|+.|++|++|++.......+.++.+|.++|.+++|+|+....+|++|+.|++|++||+.++.  
T Consensus        12 V~~~~~s~~-g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~   90 (297)
T 2pm7_B           12 IHDAVMDYY-GKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWS   90 (297)
T ss_dssp             EEEEEECTT-SSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBC
T ss_pred             eEEEEECCC-CCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceE
Confidence            346667766 56899999999999999865444677899999999999999875222389999999999999998874  


Q ss_pred             EEEEeccCCCCEEEEEEecC--CCEEEEEeCCCCEEEEeCCCCe--eeEEEecCCcceEEEEEcCC-------------C
Q psy4650         114 CVQTLEGHGQNISAVCFHPE--LPIVITGSEDGSVRVWHSGTHR--LEISLTYGLERVWTISSLKG-------------S  176 (381)
Q Consensus       114 ~~~~~~~~~~~v~~~~~~p~--~~~l~s~~~d~~i~vwd~~~~~--~~~~~~~~~~~v~~v~~~~~-------------~  176 (381)
                      .+..+.+|...|.+++|+|+  +.++++++.|++|++||++++.  ....+.+|...|.+++|+|+             +
T Consensus        91 ~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~  170 (297)
T 2pm7_B           91 QIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKES  170 (297)
T ss_dssp             CCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC------------C
T ss_pred             EEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCc
Confidence            56678889999999999997  7899999999999999998763  24567789999999999997             5


Q ss_pred             CEEEEEeCCCeEEEEecCCCceEEEecCCCEEEEEecCceeecccccCC---ccccccCC---ceEEeeehHHHHHhccC
Q psy4650         177 NNVAIGYDEGSVLLKVGREEPAVSMDVNGCKIIWARHSEVQQANLKTMP---EVFENITA---GVVLTLSVHVTIKYRLD  250 (381)
Q Consensus       177 ~~l~~~~~dg~v~i~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~d---g~~l~~~~~d~~~~~~d  250 (381)
                      ++|++|+.|+.+++          ||..++...+...     ..+.++.   ..++|+|+   +.++++++.|+...+|+
T Consensus       171 ~~l~sgs~D~~v~l----------wd~~~~~~~~~~~-----~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd  235 (297)
T 2pm7_B          171 RKFVTGGADNLVKI----------WKYNSDAQTYVLE-----STLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWT  235 (297)
T ss_dssp             CEEEEEETTSCEEE----------EEEETTTTEEEEE-----EEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEE
T ss_pred             ceEEEEcCCCcEEE----------EEEcCCCceEEEE-----EEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEE
Confidence            79999999999999          5543332111100     0111111   12578888   48999999999999998


Q ss_pred             CCc
Q psy4650         251 ISD  253 (381)
Q Consensus       251 ~~~  253 (381)
                      +..
T Consensus       236 ~~~  238 (297)
T 2pm7_B          236 QDN  238 (297)
T ss_dssp             ESS
T ss_pred             eCC
Confidence            764

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=99.94  E-value=1.2e-24  Score=199.74  Aligned_cols=211  Identities=23%  Similarity=0.302  Sum_probs=166.4

Q ss_pred             eeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEE
Q psy4650          37 VDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQ  116 (381)
Q Consensus        37 ~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~  116 (381)
                      ..+.+.++ +.++++|+.|++|++||+..  ...+..+.+|...|.+++|+|++.  +|++|+.|++|++||+.+++...
T Consensus       127 ~~v~~s~d-g~~l~s~~~d~~i~iwd~~~--~~~~~~~~~h~~~v~~~~~~p~~~--~l~s~s~d~~v~iwd~~~~~~~~  201 (393)
T 1erj_A          127 RSVCFSPD-GKFLATGAEDRLIRIWDIEN--RKIVMILQGHEQDIYSLDYFPSGD--KLVSGSGDRTVRIWDLRTGQCSL  201 (393)
T ss_dssp             EEEEECTT-SSEEEEEETTSCEEEEETTT--TEEEEEECCCSSCEEEEEECTTSS--EEEEEETTSEEEEEETTTTEEEE
T ss_pred             EEEEECCC-CCEEEEEcCCCeEEEEECCC--CcEEEEEccCCCCEEEEEEcCCCC--EEEEecCCCcEEEEECCCCeeEE
Confidence            46667776 56899999999999999974  456778999999999999999877  89999999999999999998887


Q ss_pred             EeccCCCCEEEEEEec-CCCEEEEEeCCCCEEEEeCCCCeeeEEE-------ecCCcceEEEEEcCCCCEEEEEeCCCeE
Q psy4650         117 TLEGHGQNISAVCFHP-ELPIVITGSEDGSVRVWHSGTHRLEISL-------TYGLERVWTISSLKGSNNVAIGYDEGSV  188 (381)
Q Consensus       117 ~~~~~~~~v~~~~~~p-~~~~l~s~~~d~~i~vwd~~~~~~~~~~-------~~~~~~v~~v~~~~~~~~l~~~~~dg~v  188 (381)
                      .+. +...+.+++|+| ++.++++|+.|+.|++||+.++..+..+       .+|...|.+++|+|+|.++++|+.||.+
T Consensus       202 ~~~-~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v  280 (393)
T 1erj_A          202 TLS-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSV  280 (393)
T ss_dssp             EEE-CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred             EEE-cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEE
Confidence            776 567899999999 8899999999999999999999887766       5688899999999999999999999999


Q ss_pred             EEEecCC-----------------------------------CceEEEecCCCEEEEEecCceeecccccCCcc---c--
Q psy4650         189 LLKVGRE-----------------------------------EPAVSMDVNGCKIIWARHSEVQQANLKTMPEV---F--  228 (381)
Q Consensus       189 ~i~~~~~-----------------------------------~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~---~--  228 (381)
                      ++|+-..                                   ..+++-..++...+|+.........+.++...   +  
T Consensus       281 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~  360 (393)
T 1erj_A          281 KLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAV  360 (393)
T ss_dssp             EEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE
T ss_pred             EEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEe
Confidence            9996321                                   01112222233455655443333333333221   2  


Q ss_pred             ----cccCCceEEeeehHHHHHhccCCCc
Q psy4650         229 ----ENITAGVVLTLSVHVTIKYRLDISD  253 (381)
Q Consensus       229 ----~~~~dg~~l~~~~~d~~~~~~d~~~  253 (381)
                          .+.|++..+++++.|+..++|++..
T Consensus       361 ~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~  389 (393)
T 1erj_A          361 ANGSSLGPEYNVFATGSGDCKARIWKYKK  389 (393)
T ss_dssp             CSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred             cCCcCcCCCCCEEEEECCCCcEEECcccc
Confidence                2446899999999999999998754

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=99.94  E-value=2.1e-25  Score=203.80  Aligned_cols=202  Identities=17%  Similarity=0.183  Sum_probs=161.2

Q ss_pred             eeeecCCCceEEEEEecCCeEEEecCCCccceeeEee-----ccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECC-C
Q psy4650          38 DITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTL-----YGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQ-N  111 (381)
Q Consensus        38 ~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l-----~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~-~  111 (381)
                      .+.+.++....+++|+.|++|++||+...  ..+..+     .+|...|.++.|+|... .++++|+.|++|++||++ .
T Consensus       162 ~~~~~~~~~~~l~s~s~D~~i~~wd~~~~--~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~~l~sgs~D~~v~~wd~~~~  238 (380)
T 3iz6_a          162 SCQYVPDQETRLITGSGDQTCVLWDVTTG--QRISIFGSEFPSGHTADVLSLSINSLNA-NMFISGSCDTTVRLWDLRIT  238 (380)
T ss_dssp             CCBCCSSSSSCEEEECTTSCEEEECTTTC--CEEEEECCCSSSSCCSCEEEEEECSSSC-CEEEEEETTSCEEEEETTTT
T ss_pred             EEEEecCCCCEEEEECCCCcEEEEEcCCC--cEEEEeecccCCCCccCeEEEEeecCCC-CEEEEEECCCeEEEEECCCC
Confidence            34455555668999999999999999753  333444     68999999999987332 389999999999999997 4


Q ss_pred             CeEEEEeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEecCCc-------ceEEEEEcCCCCEEEEEeC
Q psy4650         112 KTCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLE-------RVWTISSLKGSNNVAIGYD  184 (381)
Q Consensus       112 ~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~-------~v~~v~~~~~~~~l~~~~~  184 (381)
                      +..+..+.+|.+.|.+++|+|++.++++|+.|++|++||++++..+..+..+..       .|.+++|+|+|.++++|+.
T Consensus       239 ~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~  318 (380)
T 3iz6_a          239 SRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYS  318 (380)
T ss_dssp             CCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECT
T ss_pred             CcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEEC
Confidence            577888999999999999999999999999999999999999998888765432       4889999999999999999


Q ss_pred             CCeEEEEecCCCceEEEecCCCEEEEEecCceeecccccCCccccccCCceEEeeehHHHHHhccCCCcC
Q psy4650         185 EGSVLLKVGREEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSVHVTIKYRLDISDS  254 (381)
Q Consensus       185 dg~v~i~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~d~~~~~~d~~~~  254 (381)
                      ||.+++          ||...+..+........ .. .+....++|+|||..|++++.|+...+|++...
T Consensus       319 dg~i~v----------wd~~~~~~~~~~~~~~~-~h-~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~  376 (380)
T 3iz6_a          319 NGDCYV----------WDTLLAEMVLNLGTLQN-SH-EGRISCLGLSSDGSALCTGSWDKNLKIWAFSGH  376 (380)
T ss_dssp             TSCEEE----------EETTTCCEEEEECCSCS-SC-CCCCCEEEECSSSSEEEEECTTSCEEEEECCSS
T ss_pred             CCCEEE----------EECCCCceEEEEecccC-CC-CCceEEEEECCCCCEEEEeeCCCCEEEEecCCC
Confidence            999999          77766665554421100 00 111112578999999999999999999998754

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=99.94  E-value=2.2e-25  Score=201.87  Aligned_cols=200  Identities=16%  Similarity=0.162  Sum_probs=164.3

Q ss_pred             eeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEE
Q psy4650          37 VDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQ  116 (381)
Q Consensus        37 ~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~  116 (381)
                      ..+.+.++ +.++++++.|++|++||+..  ...+..+.+|.+.|.+++|+|++.. ++++++.|++|++||+.++++..
T Consensus       143 ~~v~~spd-g~~l~sgs~dg~v~iwd~~~--~~~~~~~~~h~~~v~~v~~s~~~~~-~~~s~~~dg~v~~wd~~~~~~~~  218 (357)
T 4g56_B          143 KTLSVFSD-GTQAVSGGKDFSVKVWDLSQ--KAVLKSYNAHSSEVNCVAACPGKDT-IFLSCGEDGRILLWDTRKPKPAT  218 (357)
T ss_dssp             EEEEECSS-SSEEEEEETTSCEEEEETTT--TEEEEEECCCSSCEEEEEECTTCSS-CEEEEETTSCEEECCTTSSSCBC
T ss_pred             EEEEECCC-CCEEEEEeCCCeEEEEECCC--CcEEEEEcCCCCCEEEEEEccCCCc-eeeeeccCCceEEEECCCCceee
Confidence            45666776 56899999999999999974  5677889999999999999998753 78999999999999999987665


Q ss_pred             Ee--ccCCCCEEEEEEecCC-CEEEEEeCCCCEEEEeCCCCeeeEEEecCCcceEEEEEcCCC-CEEEEEeCCCeEEEEe
Q psy4650         117 TL--EGHGQNISAVCFHPEL-PIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGS-NNVAIGYDEGSVLLKV  192 (381)
Q Consensus       117 ~~--~~~~~~v~~~~~~p~~-~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~~l~~~~~dg~v~i~~  192 (381)
                      .+  ..|...+.+++|+|++ .++++|+.|+.|++||+++++.+..+.+|...|.+++|+|++ ++|++|+.||.+++  
T Consensus       219 ~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~i--  296 (357)
T 4g56_B          219 RIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAV--  296 (357)
T ss_dssp             BCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEE--
T ss_pred             eeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEE--
Confidence            54  4567789999999975 588999999999999999999999999999999999999987 57999999999999  


Q ss_pred             cCCCceEEEecCCCEEEEEecCceeecccccCCccccccC-CceEEeeehHHHHHhccCCCcChhH
Q psy4650         193 GREEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENIT-AGVVLTLSVHVTIKYRLDISDSHRS  257 (381)
Q Consensus       193 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-dg~~l~~~~~d~~~~~~d~~~~~~~  257 (381)
                              ||..+++++......   ..+    ..++|+| |+..+++++.|+.++.|++....+.
T Consensus       297 --------wd~~~~~~~~~~~H~---~~V----~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~~~  347 (357)
T 4g56_B          297 --------LDADFSEVFRDLSHR---DFV----TGVAWSPLDHSKFTTVGWDHKVLHHHLPSEGRT  347 (357)
T ss_dssp             --------ECTTSCEEEEECCCS---SCE----EEEEECSSSTTEEEEEETTSCEEEEECC-----
T ss_pred             --------EECCCCcEeEECCCC---CCE----EEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcc
Confidence                    888777766543211   111    1257887 8999999999999999998765444

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=99.93  E-value=3.3e-25  Score=195.53  Aligned_cols=202  Identities=14%  Similarity=0.137  Sum_probs=156.7

Q ss_pred             eeeeecCC-CceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCe--
Q psy4650          37 VDITTNKD-MIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKT--  113 (381)
Q Consensus        37 ~~i~~~~~-~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~--  113 (381)
                      ..+.+.++ .+.++++++.|++|++||+.......+..+.+|...|.+++|+|+....+|++|+.|++|++||+.++.  
T Consensus        57 ~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~  136 (297)
T 2pm7_B           57 WRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTT  136 (297)
T ss_dssp             EEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCB
T ss_pred             EEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCce
Confidence            45555443 367999999999999999975433456778899999999999997323489999999999999998763  


Q ss_pred             EEEEeccCCCCEEEEEEecC-------------CCEEEEEeCCCCEEEEeCCCCe----eeEEEecCCcceEEEEEcCCC
Q psy4650         114 CVQTLEGHGQNISAVCFHPE-------------LPIVITGSEDGSVRVWHSGTHR----LEISLTYGLERVWTISSLKGS  176 (381)
Q Consensus       114 ~~~~~~~~~~~v~~~~~~p~-------------~~~l~s~~~d~~i~vwd~~~~~----~~~~~~~~~~~v~~v~~~~~~  176 (381)
                      ....+.+|...|.+++|+|+             +..|++|+.|++|++||++++.    ....+.+|...|.+++|+|++
T Consensus       137 ~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~  216 (297)
T 2pm7_B          137 SPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTV  216 (297)
T ss_dssp             CCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCC
T ss_pred             eeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCC
Confidence            24567889999999999997             4699999999999999998765    566788999999999999985


Q ss_pred             ---CEEEEEeCCCeEEEEecCCCceEEEecCCCEEEE---EecCceeecccccCCccccccCCceEEeeehHHHHHhccC
Q psy4650         177 ---NNVAIGYDEGSVLLKVGREEPAVSMDVNGCKIIW---ARHSEVQQANLKTMPEVFENITAGVVLTLSVHVTIKYRLD  250 (381)
Q Consensus       177 ---~~l~~~~~dg~v~i~~~~~~~~~~~d~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~d~~~~~~d  250 (381)
                         .++++++.|+.+++|          |..++...|   .....    ........++|+|+|..|++++.|+..++|+
T Consensus       217 ~~~~~las~s~D~~v~iW----------d~~~~~~~~~~~~~~~~----~~~~~v~~~~~s~~g~~las~~~D~~v~lw~  282 (297)
T 2pm7_B          217 LLRSYMASVSQDRTCIIW----------TQDNEQGPWKKTLLKEE----KFPDVLWRASWSLSGNVLALSGGDNKVTLWK  282 (297)
T ss_dssp             SSSEEEEEEETTSCEEEE----------EESSTTSCCEEEESSSS----CCSSCEEEEEECSSSCCEEEEETTSCEEEEE
T ss_pred             CCceEEEEEECCCcEEEE----------EeCCCCCccceeeeecc----cCCCcEEEEEECCCCCEEEEEcCCCcEEEEE
Confidence               799999999999995          443321000   01000    0011111257899999999999999999998


Q ss_pred             CC
Q psy4650         251 IS  252 (381)
Q Consensus       251 ~~  252 (381)
                      ..
T Consensus       283 ~~  284 (297)
T 2pm7_B          283 EN  284 (297)
T ss_dssp             EC
T ss_pred             EC
Confidence            65

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=99.93  E-value=4.4e-24  Score=192.25  Aligned_cols=210  Identities=15%  Similarity=0.240  Sum_probs=162.7

Q ss_pred             eeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEE
Q psy4650          37 VDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQ  116 (381)
Q Consensus        37 ~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~  116 (381)
                      ..+.+.++ ..++++++.|++|++||+..  ...+..+.+|.+.|.+++|+|++.  +|++|+.|++|++||+.... ..
T Consensus        80 ~~~~~~~~-~~~l~s~s~D~~v~lwd~~~--~~~~~~~~~h~~~v~~v~~sp~~~--~l~s~~~d~~i~~wd~~~~~-~~  153 (343)
T 2xzm_R           80 SDLALSQE-NCFAISSSWDKTLRLWDLRT--GTTYKRFVGHQSEVYSVAFSPDNR--QILSAGAEREIKLWNILGEC-KF  153 (343)
T ss_dssp             EEEEECSS-TTEEEEEETTSEEEEEETTS--SCEEEEEECCCSCEEEEEECSSTT--EEEEEETTSCEEEEESSSCE-EE
T ss_pred             EEEEECCC-CCEEEEEcCCCcEEEEECCC--CcEEEEEcCCCCcEEEEEECCCCC--EEEEEcCCCEEEEEeccCCc-ee
Confidence            45556665 56899999999999999974  456778999999999999999877  89999999999999998443 33


Q ss_pred             Ee---ccCCCCEEEEEEecCC----------CEEEEEeCCCCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEe
Q psy4650         117 TL---EGHGQNISAVCFHPEL----------PIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGY  183 (381)
Q Consensus       117 ~~---~~~~~~v~~~~~~p~~----------~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~  183 (381)
                      ..   .+|...|.+++|+|++          .++++++.|+.|++|| ..+.....+.+|...|.+++|+|+|++|++|+
T Consensus       154 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs  232 (343)
T 2xzm_R          154 SSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNHLSISPNGKYIATGG  232 (343)
T ss_dssp             ECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred             eeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEcCccccceEEEECCCCCEEEEEc
Confidence            33   3788999999999987          6899999999999999 45677788889999999999999999999999


Q ss_pred             CCCeEEEEecCC--Cc---------e--EEEe---------cCCCEEEEEecCceeec--ccc-----------cCC---
Q psy4650         184 DEGSVLLKVGRE--EP---------A--VSMD---------VNGCKIIWARHSEVQQA--NLK-----------TMP---  225 (381)
Q Consensus       184 ~dg~v~i~~~~~--~~---------~--~~~d---------~~~~~~~~~~~~~~~~~--~~~-----------~~~---  225 (381)
                      .||.+++|+...  ..         +  +.|.         .+.+..+|.........  .+.           ++.   
T Consensus       233 ~dg~v~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~~la~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  312 (343)
T 2xzm_R          233 KDKKLLIWDILNLTYPQREFDAGSTINQIAFNPKLQWVAVGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQC  312 (343)
T ss_dssp             TTCEEEEEESSCCSSCSEEEECSSCEEEEEECSSSCEEEEEESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCE
T ss_pred             CCCeEEEEECCCCcccceeecCCCcEEEEEECCCCCEEEEECCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCce
Confidence            999999998521  11         1  1222         23455667654322211  111           111   


Q ss_pred             ccccccCCceEEeeehHHHHHhccCCCc
Q psy4650         226 EVFENITAGVVLTLSVHVTIKYRLDISD  253 (381)
Q Consensus       226 ~~~~~~~dg~~l~~~~~d~~~~~~d~~~  253 (381)
                      ..++|+|+|..|++++.|+.++.|++..
T Consensus       313 ~~~~~sp~g~~l~sg~~Dg~v~~w~~~~  340 (343)
T 2xzm_R          313 TSLAWNALGKKLFAGFTDGVIRTFSFET  340 (343)
T ss_dssp             EEEEECSSSCCEEEEETTSEEEEEEEEE
T ss_pred             EEEEECCCCCeEEEecCCceEEEEEEEc
Confidence            1268899999999999999888888643

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=99.93  E-value=2.7e-24  Score=208.59  Aligned_cols=155  Identities=17%  Similarity=0.173  Sum_probs=137.3

Q ss_pred             ceeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEE
Q psy4650          36 KVDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCV  115 (381)
Q Consensus        36 ~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~  115 (381)
                      ...+.+.+++...+++++.|++|++|+..  ....+..+.+|.+.|.+++|+|++.  +|++|+.|++|++||..+++..
T Consensus       150 v~~v~f~p~~~~~l~s~s~D~~v~lwd~~--~~~~~~~l~~H~~~V~~v~fspdg~--~las~s~D~~i~lwd~~~g~~~  225 (611)
T 1nr0_A          150 MNSVDFKPSRPFRIISGSDDNTVAIFEGP--PFKFKSTFGEHTKFVHSVRYNPDGS--LFASTGGDGTIVLYNGVDGTKT  225 (611)
T ss_dssp             EEEEEECSSSSCEEEEEETTSCEEEEETT--TBEEEEEECCCSSCEEEEEECTTSS--EEEEEETTSCEEEEETTTCCEE
T ss_pred             ceEEEECCCCCeEEEEEeCCCeEEEEECC--CCeEeeeeccccCceEEEEECCCCC--EEEEEECCCcEEEEECCCCcEe
Confidence            45677778766679999999999999975  3456788999999999999999877  8999999999999999999888


Q ss_pred             EEec-------cCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEE-----------------------------
Q psy4650         116 QTLE-------GHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEIS-----------------------------  159 (381)
Q Consensus       116 ~~~~-------~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~-----------------------------  159 (381)
                      ..+.       +|.+.|.+++|+|++.+|++++.|++|++||+.+++....                             
T Consensus       226 ~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~  305 (611)
T 1nr0_A          226 GVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGF  305 (611)
T ss_dssp             EECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCC
T ss_pred             eeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCc
Confidence            8884       7999999999999999999999999999999998765443                             


Q ss_pred             --------------EecCCcceEEEEEcCCCCEEEEEeCCCeEEEEecC
Q psy4650         160 --------------LTYGLERVWTISSLKGSNNVAIGYDEGSVLLKVGR  194 (381)
Q Consensus       160 --------------~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~~~  194 (381)
                                    +.+|...|.+++|+|+|+++++++.||.+++|+..
T Consensus       306 i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~  354 (611)
T 1nr0_A          306 INFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDIS  354 (611)
T ss_dssp             EEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred             EEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECC
Confidence                          34688899999999999999999999999999743

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=99.93  E-value=9.1e-25  Score=199.57  Aligned_cols=203  Identities=16%  Similarity=0.241  Sum_probs=156.0

Q ss_pred             eeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccc-------------------------------------
Q psy4650          37 VDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEK-------------------------------------   79 (381)
Q Consensus        37 ~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~-------------------------------------   79 (381)
                      +.+.+.++ +.++++|+.|++|++||+..  ......+.+|..                                     
T Consensus        70 ~~~~~sp~-~~~l~s~s~D~~v~iWd~~~--~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~  146 (380)
T 3iz6_a           70 YSLDWTPE-KNWIVSASQDGRLIVWNALT--SQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGN  146 (380)
T ss_dssp             EEEEECTT-SSCEEEEETTSEEEEEETTT--TEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCS
T ss_pred             EEEEEcCC-CCEEEEEeCCCeEEEEECCC--CccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccccCC
Confidence            46667776 56899999999999999863  233444444444                                     


Q ss_pred             ------------cEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEEEe-----ccCCCCEEEEEEec-CCCEEEEEe
Q psy4650          80 ------------GVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTL-----EGHGQNISAVCFHP-ELPIVITGS  141 (381)
Q Consensus        80 ------------~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~-----~~~~~~v~~~~~~p-~~~~l~s~~  141 (381)
                                  .|.++.|+|++. ..|++|+.|++|++||+.++..+..+     .+|...|.+++|+| ++..+++|+
T Consensus       147 ~~~~~~~~gh~~~v~~~~~~~~~~-~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs  225 (380)
T 3iz6_a          147 MPVSRVLTGHKGYASSCQYVPDQE-TRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGS  225 (380)
T ss_dssp             STTCCBCCCCSSCCCCCBCCSSSS-SCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEE
T ss_pred             ccceeeccCCCcceEEEEEecCCC-CEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEE
Confidence                        444445544332 25788888888888888888877766     67899999999987 778999999


Q ss_pred             CCCCEEEEeCC-CCeeeEEEecCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCceEEEecCCCEEEEEecCceeec-
Q psy4650         142 EDGSVRVWHSG-THRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKVGREEPAVSMDVNGCKIIWARHSEVQQA-  219 (381)
Q Consensus       142 ~d~~i~vwd~~-~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~~~~~~~~~~d~~~~~~~~~~~~~~~~~-  219 (381)
                      .|++|++||++ ++..+..+.+|...|.+++|+|++.++++|+.||.+++          ||..++..+.....+.... 
T Consensus       226 ~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~l----------wd~~~~~~~~~~~~~~~~~~  295 (380)
T 3iz6_a          226 CDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRL----------FDMRTGHQLQVYNREPDRND  295 (380)
T ss_dssp             TTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEE----------EETTTTEEEEEECCCCSSSC
T ss_pred             CCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEE----------EECCCCcEEEEecccccccc
Confidence            99999999998 55778889999999999999999999999999999999          8887777665543322111 


Q ss_pred             ccccCCccccccCCceEEeeehHHHHHhccCCCc
Q psy4650         220 NLKTMPEVFENITAGVVLTLSVHVTIKYRLDISD  253 (381)
Q Consensus       220 ~~~~~~~~~~~~~dg~~l~~~~~d~~~~~~d~~~  253 (381)
                      ........++|+|+|..+++++.++..+.||...
T Consensus       296 ~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~  329 (380)
T 3iz6_a          296 NELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLL  329 (380)
T ss_dssp             CSSCSCSEEEECSSSSEEEEECTTSCEEEEETTT
T ss_pred             cccCceEEEEECCCCCEEEEEECCCCEEEEECCC
Confidence            0011111268899999999999999999999754

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=99.93  E-value=8.4e-24  Score=187.71  Aligned_cols=199  Identities=20%  Similarity=0.316  Sum_probs=166.6

Q ss_pred             eeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEE
Q psy4650          37 VDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQ  116 (381)
Q Consensus        37 ~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~  116 (381)
                      ..+.+.++ +.++++++.|+.|++||+..  ...+..+.+|...|.++.|+|++.  ++++|+.|++|++||+.+++.+.
T Consensus        69 ~~~~~~~~-~~~l~s~~~d~~i~vwd~~~--~~~~~~~~~~~~~v~~~~~~~~~~--~l~s~~~d~~i~iwd~~~~~~~~  143 (312)
T 4ery_A           69 SDVAWSSD-SNLLVSASDDKTLKIWDVSS--GKCLKTLKGHSNYVFCCNFNPQSN--LIVSGSFDESVRIWDVKTGKCLK  143 (312)
T ss_dssp             EEEEECTT-SSEEEEEETTSEEEEEETTT--CCEEEEEECCSSCEEEEEECSSSS--EEEEEETTSCEEEEETTTCCEEE
T ss_pred             EEEEEcCC-CCEEEEECCCCEEEEEECCC--CcEEEEEcCCCCCEEEEEEcCCCC--EEEEEeCCCcEEEEECCCCEEEE
Confidence            45666666 56999999999999999974  456788999999999999999876  89999999999999999999999


Q ss_pred             EeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEec-CCcceEEEEEcCCCCEEEEEeCCCeEEEEecCC
Q psy4650         117 TLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTY-GLERVWTISSLKGSNNVAIGYDEGSVLLKVGRE  195 (381)
Q Consensus       117 ~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~-~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~~~~  195 (381)
                      .+..|..+|.+++|+|++..+++++.|+.|++||+++++.+..+.. +...+..++|+|++.++++++.||.+++     
T Consensus       144 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i-----  218 (312)
T 4ery_A          144 TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL-----  218 (312)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEE-----
T ss_pred             EecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEE-----
Confidence            9999999999999999999999999999999999999988877643 5567999999999999999999999999     


Q ss_pred             CceEEEecCCCEEEEEecCceeecccccCCcccc-ccCCceEEeeehHHHHHhccCCCcC
Q psy4650         196 EPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFE-NITAGVVLTLSVHVTIKYRLDISDS  254 (381)
Q Consensus       196 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~dg~~l~~~~~d~~~~~~d~~~~  254 (381)
                           ||..++..+.....+.......  .  .. ..+++.++++++.++.++.|++...
T Consensus       219 -----wd~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~l~sg~~dg~i~vwd~~~~  269 (312)
T 4ery_A          219 -----WDYSKGKCLKTYTGHKNEKYCI--F--ANFSVTGGKWIVSGSEDNLVYIWNLQTK  269 (312)
T ss_dssp             -----EETTTTEEEEEECSSCCSSSCC--C--EEEECSSSCEEEECCTTSCEEEEETTTC
T ss_pred             -----EECCCCcEEEEEEecCCceEEE--E--EEEEeCCCcEEEEECCCCEEEEEECCCc
Confidence                 7887777766554332111110  0  11 2367899999999999999998643

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.92  E-value=2.3e-24  Score=198.38  Aligned_cols=199  Identities=16%  Similarity=0.260  Sum_probs=165.3

Q ss_pred             eeecCCCceEEEEEecCCeEEEecCCCccc--eeeEeeccccccEEEEEeee-CCCccEEEEEcCCCeEEEEECCCC---
Q psy4650          39 ITTNKDMIEYKISYQESSRVKAFNPIQVAT--LILKTLYGHEKGVNCVDYYH-GGDKPYLISGADDRLVKIWDYQNK---  112 (381)
Q Consensus        39 i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~--~~~~~l~~h~~~v~~~~~~~-~~~~~~l~s~~~d~~v~vwd~~~~---  112 (381)
                      +..+++...++++++.+|.|++|++.....  ..+..+.+|.+.|.+++|+| ++.  +|++|+.||+|++||+.++   
T Consensus        40 ~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~--~l~s~s~dg~v~vw~~~~~~~~  117 (402)
T 2aq5_A           40 CAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDN--VIASGSEDCTVMVWEIPDGGLV  117 (402)
T ss_dssp             EEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTT--EEEEEETTSEEEEEECCTTCCS
T ss_pred             EEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCC--EEEEEeCCCeEEEEEccCCCCc
Confidence            445566566777889999999999854222  23456789999999999999 665  8999999999999999987   


Q ss_pred             ----eEEEEeccCCCCEEEEEEecCC-CEEEEEeCCCCEEEEeCCCCeeeEEE--ecCCcceEEEEEcCCCCEEEEEeCC
Q psy4650         113 ----TCVQTLEGHGQNISAVCFHPEL-PIVITGSEDGSVRVWHSGTHRLEISL--TYGLERVWTISSLKGSNNVAIGYDE  185 (381)
Q Consensus       113 ----~~~~~~~~~~~~v~~~~~~p~~-~~l~s~~~d~~i~vwd~~~~~~~~~~--~~~~~~v~~v~~~~~~~~l~~~~~d  185 (381)
                          .++..+.+|...|.+++|+|++ ..+++++.|+.|++||+.+++....+  ..|...|.+++|+|++.++++++.|
T Consensus       118 ~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  197 (402)
T 2aq5_A          118 LPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRD  197 (402)
T ss_dssp             SCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETT
T ss_pred             cccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecC
Confidence                5678889999999999999998 59999999999999999999999999  7899999999999999999999999


Q ss_pred             CeEEEEecCCCceEEEecCCCEEEEEe-cCceeecccccCCccccccCCceEEeee---hHHHHHhccCCCcC
Q psy4650         186 GSVLLKVGREEPAVSMDVNGCKIIWAR-HSEVQQANLKTMPEVFENITAGVVLTLS---VHVTIKYRLDISDS  254 (381)
Q Consensus       186 g~v~i~~~~~~~~~~~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~dg~~l~~~---~~d~~~~~~d~~~~  254 (381)
                      |.+++          ||..++..+... ..+..     .....+.|+|+|.+++++   ..++....||+...
T Consensus       198 ~~i~i----------wd~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~  255 (402)
T 2aq5_A          198 KRVRV----------IEPRKGTVVAEKDRPHEG-----TRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHL  255 (402)
T ss_dssp             SEEEE----------EETTTTEEEEEEECSSCS-----SSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBC
T ss_pred             CcEEE----------EeCCCCceeeeeccCCCC-----CcceEEEEcCCCcEEEEeccCCCCceEEEEcCccc
Confidence            99999          888888777655 22211     111125678999999998   78888899998654

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.92  E-value=8.5e-24  Score=208.16  Aligned_cols=200  Identities=14%  Similarity=0.202  Sum_probs=164.1

Q ss_pred             eeeeecCCCceEEEEEecCCeEEEecCCCcc---ceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCe
Q psy4650          37 VDITTNKDMIEYKISYQESSRVKAFNPIQVA---TLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKT  113 (381)
Q Consensus        37 ~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~---~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~  113 (381)
                      .++...++...++++|+.|++|++|++....   ......+.+|.+.|.+++|+|++.  +|++|+.|++|++||+.++.
T Consensus       386 ~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~--~l~sgs~Dg~v~vwd~~~~~  463 (694)
T 3dm0_A          386 TAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQ--FALSGSWDGELRLWDLAAGV  463 (694)
T ss_dssp             EEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSS--EEEEEETTSEEEEEETTTTE
T ss_pred             EEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCC--EEEEEeCCCcEEEEECCCCc
Confidence            4555666667899999999999999986422   234567899999999999999876  89999999999999999999


Q ss_pred             EEEEeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEE---ecCCcceEEEEEcCCC--CEEEEEeCCCeE
Q psy4650         114 CVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISL---TYGLERVWTISSLKGS--NNVAIGYDEGSV  188 (381)
Q Consensus       114 ~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~---~~~~~~v~~v~~~~~~--~~l~~~~~dg~v  188 (381)
                      ....+.+|...|.+++|+|++..+++|+.|++|++||..........   .+|...|.+++|+|++  ..+++|+.||.+
T Consensus       464 ~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v  543 (694)
T 3dm0_A          464 STRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTV  543 (694)
T ss_dssp             EEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCE
T ss_pred             ceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeE
Confidence            99999999999999999999999999999999999998765433322   3577889999999986  589999999999


Q ss_pred             EEEecCCCceEEEecCCCEEEEEecCceeecccccCCccccccCCceEEeeehHHHHHhccCCCcC
Q psy4650         189 LLKVGREEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSVHVTIKYRLDISDS  254 (381)
Q Consensus       189 ~i~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~d~~~~~~d~~~~  254 (381)
                      ++          ||..++........+..  .    ...++++|+|..+++++.|+.+++||+...
T Consensus       544 ~v----------wd~~~~~~~~~~~~h~~--~----v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~  593 (694)
T 3dm0_A          544 KV----------WNLSNCKLRSTLAGHTG--Y----VSTVAVSPDGSLCASGGKDGVVLLWDLAEG  593 (694)
T ss_dssp             EE----------EETTTCCEEEEECCCSS--C----EEEEEECTTSSEEEEEETTSBCEEEETTTT
T ss_pred             EE----------EECCCCcEEEEEcCCCC--C----EEEEEEeCCCCEEEEEeCCCeEEEEECCCC
Confidence            99          66666555443332211  1    111578899999999999999999998654

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=99.92  E-value=1e-23  Score=186.62  Aligned_cols=164  Identities=23%  Similarity=0.309  Sum_probs=139.6

Q ss_pred             eeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEE
Q psy4650          37 VDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQ  116 (381)
Q Consensus        37 ~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~  116 (381)
                      ..+.+.++ ..++++|+.|++|++||+.. .......+.+|...|.+++|+|.+. ..|++|+.|++|++||+.++....
T Consensus       101 ~~~~~~~~-~~~l~sgs~D~~v~lWd~~~-~~~~~~~~~~h~~~v~~v~~~p~~~-~~l~sgs~D~~v~iwd~~~~~~~~  177 (304)
T 2ynn_A          101 RSIAVHPT-KPYVLSGSDDLTVKLWNWEN-NWALEQTFEGHEHFVMCVAFNPKDP-STFASGCLDRTVKVWSLGQSTPNF  177 (304)
T ss_dssp             EEEEECSS-SSEEEEEETTSCEEEEEGGG-TTEEEEEECCCCSCEEEEEECTTCT-TEEEEEETTSEEEEEETTCSSCSE
T ss_pred             EEEEEcCC-CCEEEEECCCCeEEEEECCC-CcchhhhhcccCCcEEEEEECCCCC-CEEEEEeCCCeEEEEECCCCCccc
Confidence            45666766 56899999999999999864 2345677899999999999999433 289999999999999998876655


Q ss_pred             Ee-ccCCCCEEEEEEec--CCCEEEEEeCCCCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCCCeEEEEec
Q psy4650         117 TL-EGHGQNISAVCFHP--ELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKVG  193 (381)
Q Consensus       117 ~~-~~~~~~v~~~~~~p--~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~~  193 (381)
                      .+ .+|...+..+.|+|  ++.++++|+.|++|++||+++++.+..+.+|...|.+++|+|++.++++|+.||.+++   
T Consensus       178 ~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~i---  254 (304)
T 2ynn_A          178 TLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKI---  254 (304)
T ss_dssp             EEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEE---
T ss_pred             eeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEE---
Confidence            55 45668899999987  6779999999999999999999999999999999999999999999999999999999   


Q ss_pred             CCCceEEEecCCCEEEEEec
Q psy4650         194 REEPAVSMDVNGCKIIWARH  213 (381)
Q Consensus       194 ~~~~~~~~d~~~~~~~~~~~  213 (381)
                             ||..++++.....
T Consensus       255 -------Wd~~~~~~~~~~~  267 (304)
T 2ynn_A          255 -------WNSSTYKVEKTLN  267 (304)
T ss_dssp             -------EETTTCCEEEEEC
T ss_pred             -------EECCCCceeeecc
Confidence                   7776666655443

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.92  E-value=2.6e-23  Score=189.89  Aligned_cols=213  Identities=11%  Similarity=0.026  Sum_probs=163.1

Q ss_pred             ceeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEE
Q psy4650          36 KVDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCV  115 (381)
Q Consensus        36 ~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~  115 (381)
                      ...+.+.++...++++++.|++|++||+.......+....+|...|.+++|+|++.  +|++|+.|+.|++||+ ++..+
T Consensus       121 v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~i~d~-~~~~~  197 (383)
T 3ei3_B          121 ITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVIQVFAKTDSWDYWYCCVDVSVSRQ--MLATGDSTGRLLLLGL-DGHEI  197 (383)
T ss_dssp             EEEEEEETTEEEEEEEEETTTEEEEEETTSCEEEEEECCCCSSCCEEEEEEETTTT--EEEEEETTSEEEEEET-TSCEE
T ss_pred             eeEEEeCCCCCCEEEEEeCCCEEEEEECCCCceEEEeccCCCCCCeEEEEECCCCC--EEEEECCCCCEEEEEC-CCCEE
Confidence            34666777557899999999999999997422222222344558899999999876  8999999999999999 57788


Q ss_pred             EEeccCCCCEEEEEEecCCC-EEEEEeCCCCEEEEeCCC----CeeeEEEecCCcceEEEEEcC-CCCEEEEEeCCCeEE
Q psy4650         116 QTLEGHGQNISAVCFHPELP-IVITGSEDGSVRVWHSGT----HRLEISLTYGLERVWTISSLK-GSNNVAIGYDEGSVL  189 (381)
Q Consensus       116 ~~~~~~~~~v~~~~~~p~~~-~l~s~~~d~~i~vwd~~~----~~~~~~~~~~~~~v~~v~~~~-~~~~l~~~~~dg~v~  189 (381)
                      ..+.+|...|.+++|+|++. ++++|+.|+.|++||+++    +..+..+ .|...|.+++|+| ++.++++++.||.++
T Consensus       198 ~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~  276 (383)
T 3ei3_B          198 FKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIR  276 (383)
T ss_dssp             EEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEE
T ss_pred             EEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEE
Confidence            89999999999999999999 999999999999999997    6666666 6889999999999 999999999999999


Q ss_pred             EEecCCCce------------------------------EEEe--------cCCCEEEEEecCceeecccccC-----Cc
Q psy4650         190 LKVGREEPA------------------------------VSMD--------VNGCKIIWARHSEVQQANLKTM-----PE  226 (381)
Q Consensus       190 i~~~~~~~~------------------------------~~~d--------~~~~~~~~~~~~~~~~~~~~~~-----~~  226 (381)
                      +|+......                              +.+.        .++...+|+.........+.+.     ..
T Consensus       277 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~  356 (383)
T 3ei3_B          277 VYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQLLLNDKRTIDIYDANSGGLVHQLRDPNAAGIIS  356 (383)
T ss_dssp             EEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTTCTTCCCCEEEEETTTCCEEEEECBTTBCSCCC
T ss_pred             EEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCcccccCCCCeEEEEecCCCceeeeecCCCCCceEE
Confidence            997432100                              1111        1234455655444333333321     11


Q ss_pred             cccccCCceEEeeehHHHHHhccCCCc
Q psy4650         227 VFENITAGVVLTLSVHVTIKYRLDISD  253 (381)
Q Consensus       227 ~~~~~~dg~~l~~~~~d~~~~~~d~~~  253 (381)
                      .++|+|+|.++++++ ++.+.+|++..
T Consensus       357 ~~~~s~~g~~l~s~s-d~~i~iw~~~~  382 (383)
T 3ei3_B          357 LNKFSPTGDVLASGM-GFNILIWNRED  382 (383)
T ss_dssp             EEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred             EEEEecCccEEEEec-CCcEEEEecCC
Confidence            147899999999996 78888898753

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.92  E-value=1.3e-23  Score=206.92  Aligned_cols=152  Identities=24%  Similarity=0.354  Sum_probs=133.6

Q ss_pred             eeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEE
Q psy4650          37 VDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQ  116 (381)
Q Consensus        37 ~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~  116 (381)
                      ..+...++ +.++++|+.|++|++||+..  ......+.+|.+.|.+++|+|++.  +|++|+.|++|++||........
T Consensus       434 ~~v~~s~~-g~~l~sgs~Dg~v~vwd~~~--~~~~~~~~~h~~~v~~~~~s~~~~--~l~s~s~D~~i~iwd~~~~~~~~  508 (694)
T 3dm0_A          434 EDVVLSSD-GQFALSGSWDGELRLWDLAA--GVSTRRFVGHTKDVLSVAFSLDNR--QIVSASRDRTIKLWNTLGECKYT  508 (694)
T ss_dssp             EEEEECTT-SSEEEEEETTSEEEEEETTT--TEEEEEEECCSSCEEEEEECTTSS--CEEEEETTSCEEEECTTSCEEEE
T ss_pred             EEEEECCC-CCEEEEEeCCCcEEEEECCC--CcceeEEeCCCCCEEEEEEeCCCC--EEEEEeCCCEEEEEECCCCccee
Confidence            45556665 56999999999999999974  456778899999999999999877  79999999999999987654333


Q ss_pred             Ee---ccCCCCEEEEEEecCC--CEEEEEeCCCCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCCCeEEEE
Q psy4650         117 TL---EGHGQNISAVCFHPEL--PIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLK  191 (381)
Q Consensus       117 ~~---~~~~~~v~~~~~~p~~--~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~  191 (381)
                      ..   .+|...|.+++|+|++  ..+++|+.|++|++||+++++....+.+|...|.+++|+|+++++++|+.||.+++|
T Consensus       509 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iw  588 (694)
T 3dm0_A          509 ISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLW  588 (694)
T ss_dssp             ECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEE
T ss_pred             eccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEE
Confidence            32   4688899999999987  589999999999999999999999999999999999999999999999999999998


Q ss_pred             ec
Q psy4650         192 VG  193 (381)
Q Consensus       192 ~~  193 (381)
                      +.
T Consensus       589 d~  590 (694)
T 3dm0_A          589 DL  590 (694)
T ss_dssp             ET
T ss_pred             EC
Confidence            73

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=99.92  E-value=4.2e-24  Score=197.41  Aligned_cols=195  Identities=16%  Similarity=0.196  Sum_probs=161.0

Q ss_pred             ecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEEEecc
Q psy4650          41 TNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEG  120 (381)
Q Consensus        41 ~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~  120 (381)
                      ..++ +.++++++.||.|++|++..  ......+.+|.+.|.+++|+|++.  +|++|+.|++|++||+.+++.+..+.+
T Consensus       105 ~~~~-~~~l~~~~~dg~i~iwd~~~--~~~~~~~~~h~~~v~~~~~~~~~~--~l~s~s~d~~i~iwd~~~~~~~~~~~~  179 (420)
T 3vl1_A          105 AKLQ-MRRFILGTTEGDIKVLDSNF--NLQREIDQAHVSEITKLKFFPSGE--ALISSSQDMQLKIWSVKDGSNPRTLIG  179 (420)
T ss_dssp             ECSS-SCEEEEEETTSCEEEECTTS--CEEEEETTSSSSCEEEEEECTTSS--EEEEEETTSEEEEEETTTCCCCEEEEC
T ss_pred             EecC-CCEEEEEECCCCEEEEeCCC--cceeeecccccCccEEEEECCCCC--EEEEEeCCCeEEEEeCCCCcCceEEcC
Confidence            3444 56899999999999999873  455667789999999999999876  899999999999999999999999999


Q ss_pred             CCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEec---CCcceEE---------------------EEEcCCC
Q psy4650         121 HGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTY---GLERVWT---------------------ISSLKGS  176 (381)
Q Consensus       121 ~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~---~~~~v~~---------------------v~~~~~~  176 (381)
                      |...|.+++|+|++..+++++.|+.|++||+.+++....+..   +...+.+                     ++|+|++
T Consensus       180 h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~  259 (420)
T 3vl1_A          180 HRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYG  259 (420)
T ss_dssp             CSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTT
T ss_pred             CCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCC
Confidence            999999999999999999999999999999999999988875   3334444                     4557899


Q ss_pred             CEEEEEeCCCeEEEEecCCCceEEEecCCCEEEEEecCceeecccccCCccccccCCce-EEeeehHHHHHhccCCCcCh
Q psy4650         177 NNVAIGYDEGSVLLKVGREEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGV-VLTLSVHVTIKYRLDISDSH  255 (381)
Q Consensus       177 ~~l~~~~~dg~v~i~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~-~l~~~~~d~~~~~~d~~~~~  255 (381)
                      .++++|+.||.+++          ||..++..+.......     ......++|+|++. .+++++.++..+.||+....
T Consensus       260 ~~l~~~~~dg~i~i----------~d~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~  324 (420)
T 3vl1_A          260 KYVIAGHVSGVITV----------HNVFSKEQTIQLPSKF-----TCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPE  324 (420)
T ss_dssp             EEEEEEETTSCEEE----------EETTTCCEEEEECCTT-----SSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTT
T ss_pred             CEEEEEcCCCeEEE----------EECCCCceeEEccccc-----CCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCc
Confidence            99999999999999          7777766555543211     11111257889998 99999999999999987653

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=99.92  E-value=3.2e-23  Score=190.16  Aligned_cols=202  Identities=20%  Similarity=0.282  Sum_probs=157.3

Q ss_pred             ceeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeecccc------------------ccEEEEEeeeCCCccEEEE
Q psy4650          36 KVDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHE------------------KGVNCVDYYHGGDKPYLIS   97 (381)
Q Consensus        36 ~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~------------------~~v~~~~~~~~~~~~~l~s   97 (381)
                      ..++.+.++ +.++++++ ++++++|+...  ...+..+.+|.                  ..|.+++|+|++.  +|++
T Consensus        67 V~~v~fspd-g~~la~g~-~~~v~i~~~~~--g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~--~l~s  140 (393)
T 1erj_A           67 VCCVKFSND-GEYLATGC-NKTTQVYRVSD--GSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGK--FLAT  140 (393)
T ss_dssp             CCEEEECTT-SSEEEEEC-BSCEEEEETTT--CCEEEEECC-----------------CCCCBEEEEEECTTSS--EEEE
T ss_pred             EEEEEECCC-CCEEEEEc-CCcEEEEEecC--CCEEEEecCccccccccccccccccCCCceeEEEEEECCCCC--EEEE
Confidence            346667777 55788766 68999999864  33445555443                  2499999999877  8999


Q ss_pred             EcCCCeEEEEECCCCeEEEEeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEecCCcceEEEEEcC-CC
Q psy4650          98 GADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLK-GS  176 (381)
Q Consensus        98 ~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~-~~  176 (381)
                      |+.|++|++||+.+++.+..+.+|...|.+++|+|++..+++++.|++|++||+.+++....+. +...+.+++|+| ++
T Consensus       141 ~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~  219 (393)
T 1erj_A          141 GAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS-IEDGVTTVAVSPGDG  219 (393)
T ss_dssp             EETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSTTC
T ss_pred             EcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE-cCCCcEEEEEECCCC
Confidence            9999999999999999999999999999999999999999999999999999999999887776 557899999999 89


Q ss_pred             CEEEEEeCCCeEEEEecCCCceEEEecCCCEEEEEecCceeec-ccccCCccccccCCceEEeeehHHHHHhccCCCcC
Q psy4650         177 NNVAIGYDEGSVLLKVGREEPAVSMDVNGCKIIWARHSEVQQA-NLKTMPEVFENITAGVVLTLSVHVTIKYRLDISDS  254 (381)
Q Consensus       177 ~~l~~~~~dg~v~i~~~~~~~~~~~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~dg~~l~~~~~d~~~~~~d~~~~  254 (381)
                      .++++|+.||.+++          ||..++..+.......... ........++|+|+|..+++++.|+..+.||+...
T Consensus       220 ~~l~~~s~d~~v~i----------wd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~  288 (393)
T 1erj_A          220 KYIAAGSLDRAVRV----------WDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNA  288 (393)
T ss_dssp             CEEEEEETTSCEEE----------EETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---
T ss_pred             CEEEEEcCCCcEEE----------EECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCC
Confidence            99999999999999          6666665554432211100 00011112678899999999999999999998653

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.92  E-value=9.7e-25  Score=194.30  Aligned_cols=201  Identities=17%  Similarity=0.118  Sum_probs=155.9

Q ss_pred             ceeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCC--e
Q psy4650          36 KVDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNK--T  113 (381)
Q Consensus        36 ~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~--~  113 (381)
                      ..++.+.++ +.++++|+.|++|++||+.......+..+.+|.+.|.+++|+|+....+|++|+.|++|++||+.++  .
T Consensus        16 V~~v~~s~~-g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~   94 (316)
T 3bg1_A           16 IHDAQMDYY-GTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWE   94 (316)
T ss_dssp             EEEEEECGG-GCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCC
T ss_pred             EEEeeEcCC-CCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcce
Confidence            345666665 5699999999999999986543446778999999999999986422237999999999999999887  3


Q ss_pred             EEEEeccCCCCEEEEEEecC--CCEEEEEeCCCCEEEEeCCCCee---eEEEecCCcceEEEEEcCC-------------
Q psy4650         114 CVQTLEGHGQNISAVCFHPE--LPIVITGSEDGSVRVWHSGTHRL---EISLTYGLERVWTISSLKG-------------  175 (381)
Q Consensus       114 ~~~~~~~~~~~v~~~~~~p~--~~~l~s~~~d~~i~vwd~~~~~~---~~~~~~~~~~v~~v~~~~~-------------  175 (381)
                      ....+.+|...|.+++|+|+  +.++++|+.|++|++||+.++..   ...+.+|...+.++.|+|+             
T Consensus        95 ~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~  174 (316)
T 3bg1_A           95 KSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQ  174 (316)
T ss_dssp             EEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSC
T ss_pred             EEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCcccccccccc
Confidence            56778899999999999998  77999999999999999987632   3445678889999999997             


Q ss_pred             ----CCEEEEEeCCCeEEEEecCCCceEEEecCCC---EEEEEecCceeecccccCCccccccCCc----eEEeeehHHH
Q psy4650         176 ----SNNVAIGYDEGSVLLKVGREEPAVSMDVNGC---KIIWARHSEVQQANLKTMPEVFENITAG----VVLTLSVHVT  244 (381)
Q Consensus       176 ----~~~l~~~~~dg~v~i~~~~~~~~~~~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~dg----~~l~~~~~d~  244 (381)
                          +.++++|+.|+.+++          ||..++   .++..+..+  ...+    ..++|+|++    ..+++++.|+
T Consensus       175 ~~~~~~~l~sgs~D~~v~l----------Wd~~~~~~~~~~~~l~~h--~~~V----~~v~~sp~~~~~~~~las~s~D~  238 (316)
T 3bg1_A          175 KPNYIKRFASGGCDNLIKL----------WKEEEDGQWKEEQKLEAH--SDWV----RDVAWAPSIGLPTSTIASCSQDG  238 (316)
T ss_dssp             CCCCCCBEECCBTTSBCCE----------EEECTTSCEEEEECCBCC--SSCE----EEEECCCCSSCSCCEEEEEETTC
T ss_pred             CccccceEEEecCCCeEEE----------EEeCCCCccceeeecccC--CCce----EEEEecCCCCCCCceEEEEcCCC
Confidence                468999999999999          555332   122111111  0111    115678886    8899999999


Q ss_pred             HHhccCCCc
Q psy4650         245 IKYRLDISD  253 (381)
Q Consensus       245 ~~~~~d~~~  253 (381)
                      ..++|++..
T Consensus       239 ~v~iw~~~~  247 (316)
T 3bg1_A          239 RVFIWTCDD  247 (316)
T ss_dssp             EEEEEECSS
T ss_pred             eEEEEEccC
Confidence            999998764

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.92  E-value=4.1e-24  Score=198.80  Aligned_cols=202  Identities=8%  Similarity=-0.016  Sum_probs=156.7

Q ss_pred             eeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEE
Q psy4650          37 VDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQ  116 (381)
Q Consensus        37 ~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~  116 (381)
                      .++.++|....+|++|+.||+|++||+..........+.+|.+.|++++|+|... .+|++|+.|++|++||+.++....
T Consensus       123 ~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~-~~l~s~s~D~~v~iwd~~~~~~~~  201 (435)
T 4e54_B          123 TSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNT-NQFYASSMEGTTRLQDFKGNILRV  201 (435)
T ss_dssp             EEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCT-TEEEEECSSSCEEEEETTSCEEEE
T ss_pred             EEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCC-CEEEEEeCCCEEEEeeccCCceeE
Confidence            4677787667799999999999999997655556667789999999999998432 289999999999999998775443


Q ss_pred             Eecc--CCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCC-EEEEEeCCCeEEEEec
Q psy4650         117 TLEG--HGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSN-NVAIGYDEGSVLLKVG  193 (381)
Q Consensus       117 ~~~~--~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~-~l~~~~~dg~v~i~~~  193 (381)
                      ....  +...+.+++|+|++.++++|+.||.|++||+++ +.+..+.+|...|.+++|+|++. ++++|+.|+.+++   
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~-~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~i---  277 (435)
T 4e54_B          202 FASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDG-KELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKI---  277 (435)
T ss_dssp             EECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSS-CBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCE---
T ss_pred             EeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCc-ceeEEEecccceEEeeeecCCCceEEEEecCcceeeE---
Confidence            3333  344678999999999999999999999999864 56677888999999999999876 7889999999999   


Q ss_pred             CCCceEEEecCCCEEEEEec-CceeecccccCCccccccCCceEEeeehHHHHHhccCCCcC
Q psy4650         194 REEPAVSMDVNGCKIIWARH-SEVQQANLKTMPEVFENITAGVVLTLSVHVTIKYRLDISDS  254 (381)
Q Consensus       194 ~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~dg~~l~~~~~d~~~~~~d~~~~  254 (381)
                             ||..++....... ...+...+    ..++|+|+|.+|++++.|+.+++|++...
T Consensus       278 -------wd~~~~~~~~~~~~~~~h~~~v----~~~~~spdg~~l~s~~~D~~i~iwd~~~~  328 (435)
T 4e54_B          278 -------WDLRQVRGKASFLYSLPHRHPV----NAACFSPDGARLLTTDQKSEIRVYSASQW  328 (435)
T ss_dssp             -------EETTTCCSSSCCSBCCBCSSCE----EECCBCTTSSEEEEEESSSCEEEEESSSS
T ss_pred             -------EecccccccceEEEeeeccccc----cceeECCCCCeeEEEcCCCEEEEEECCCC
Confidence                   5554332110000 00000011    11578899999999999999999998653

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=99.92  E-value=1.4e-23  Score=190.05  Aligned_cols=216  Identities=15%  Similarity=0.139  Sum_probs=158.7

Q ss_pred             cceeeeecCCCceEEEEEec------CCeEEEecCCCcc--ceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEE
Q psy4650          35 TKVDITTNKDMIEYKISYQE------SSRVKAFNPIQVA--TLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKI  106 (381)
Q Consensus        35 ~~~~i~~~~~~~~~~~s~~~------d~~v~i~~~~~~~--~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~v  106 (381)
                      ...++.+.++ +.+|++++.      |+++++|+.....  ........+|...|.+++|+|++.   +++++.||+|++
T Consensus        44 ~V~~v~fSpD-G~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~---~l~~s~dg~v~l  119 (357)
T 4g56_B           44 QIGAVRYRRD-GALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKG---ILVASDSGAVEL  119 (357)
T ss_dssp             EEEEEEECSS-SCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTE---EEEEETTSCEEE
T ss_pred             CEEEEEECCC-CCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCC---EEEEECCCEEEE
Confidence            3467788888 568999998      7789999875422  122344567999999999999764   677889999999


Q ss_pred             EECCCCeEE----EEeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCC-EEEE
Q psy4650         107 WDYQNKTCV----QTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSN-NVAI  181 (381)
Q Consensus       107 wd~~~~~~~----~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~-~l~~  181 (381)
                      ||+.+++..    ....+|.+.|.+++|+|++.+|++|+.|++|++||+.+++.+..+.+|...|.+++|+|++. .+++
T Consensus       120 Wd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s  199 (357)
T 4g56_B          120 WEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLS  199 (357)
T ss_dssp             C--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEE
T ss_pred             eeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeee
Confidence            999887643    23457999999999999999999999999999999999999999999999999999999875 7899


Q ss_pred             EeCCCeEEEEecCC-------------Cce--EEE-----------ecCCCEEEEEecCceeecccccCCc---cccccC
Q psy4650         182 GYDEGSVLLKVGRE-------------EPA--VSM-----------DVNGCKIIWARHSEVQQANLKTMPE---VFENIT  232 (381)
Q Consensus       182 ~~~dg~v~i~~~~~-------------~~~--~~~-----------d~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~  232 (381)
                      ++.||.+++|+...             ..+  +.|           ..+....+|+.........+.++..   .++|+|
T Consensus       200 ~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp  279 (357)
T 4g56_B          200 CGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSY  279 (357)
T ss_dssp             EETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECS
T ss_pred             eccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcC
Confidence            99999999986321             111  122           2233455676655444444443332   267888


Q ss_pred             Cc-eEEeeehHHHHHhccCCCcC
Q psy4650         233 AG-VVLTLSVHVTIKYRLDISDS  254 (381)
Q Consensus       233 dg-~~l~~~~~d~~~~~~d~~~~  254 (381)
                      ++ .+|++++.|+.+++||+...
T Consensus       280 ~~~~~lasgs~D~~i~iwd~~~~  302 (357)
T 4g56_B          280 HSSPFLASISEDCTVAVLDADFS  302 (357)
T ss_dssp             SSSCCEEEEETTSCEEEECTTSC
T ss_pred             CCCCEEEEEeCCCEEEEEECCCC
Confidence            87 57888999999999998653

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=99.92  E-value=2.3e-23  Score=200.54  Aligned_cols=189  Identities=21%  Similarity=0.297  Sum_probs=158.1

Q ss_pred             eeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEE
Q psy4650          37 VDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQ  116 (381)
Q Consensus        37 ~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~  116 (381)
                      ..+.+.++ +.++++++.|+.|++|+.   ....+..+.+|...|.+++|+|++.  +|++++.|++|++||. +++.+.
T Consensus       389 ~~~~~s~d-g~~l~~~~~d~~v~~~~~---~~~~~~~~~~~~~~v~~~~~s~d~~--~l~~~~~d~~v~~w~~-~~~~~~  461 (577)
T 2ymu_A          389 RGVAFSPD-GQTIASASDDKTVKLWNR---NGQLLQTLTGHSSSVWGVAFSPDDQ--TIASASDDKTVKLWNR-NGQLLQ  461 (577)
T ss_dssp             EEEEECTT-SSCEEEEETTSEEEEECT---TCCEEEEEECCSSCEEEEEECTTSS--EEEEEETTSEEEEEET-TSCEEE
T ss_pred             EEEEECCC-CCEEEEEeCCCEEEEEeC---CCCEEEEecCCCCCeEEEEECCCCC--EEEEEcCCCEEEEEEC-CCCEEE
Confidence            35556665 568999999999999996   3566788999999999999999876  8999999999999996 566788


Q ss_pred             EeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCC
Q psy4650         117 TLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKVGREE  196 (381)
Q Consensus       117 ~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~~~~~  196 (381)
                      .+.+|...|.+++|+|++.++++++.|+.|++||. +++.+..+.+|...|++++|+|+|++|++++.||.+++      
T Consensus       462 ~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~l------  534 (577)
T 2ymu_A          462 TLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKL------  534 (577)
T ss_dssp             EEECCSSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEE------
T ss_pred             EEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEE------
Confidence            89999999999999999999999999999999995 67888999999999999999999999999999999999      


Q ss_pred             ceEEEecCCCEEEEEecCceeecccccCCccccccCCceEEeeehHHHHHhccC
Q psy4650         197 PAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSVHVTIKYRLD  250 (381)
Q Consensus       197 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~d~~~~~~d  250 (381)
                          ||. ++.++.....+.  ..+    ..++|+|||++|++++.|+.++.||
T Consensus       535 ----wd~-~~~~~~~~~~h~--~~v----~~~~fs~dg~~l~s~~~D~~i~~Wd  577 (577)
T 2ymu_A          535 ----WNR-NGQLLQTLTGHS--SSV----WGVAFSPDGQTIASASSDKTVKLWN  577 (577)
T ss_dssp             ----ECT-TSCEEEEEECCS--SCE----EEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             ----EeC-CCCEEEEEcCCC--CCE----EEEEEcCCCCEEEEEeCCCEEEEeC
Confidence                554 333333322211  111    1157889999999999998888886

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.91  E-value=1.1e-24  Score=198.41  Aligned_cols=209  Identities=11%  Similarity=0.047  Sum_probs=155.3

Q ss_pred             ceeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCe--
Q psy4650          36 KVDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKT--  113 (381)
Q Consensus        36 ~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~--  113 (381)
                      ..++.+.++ +.++++++.|+.|++|++.......+..+.+|.+.|.+++|+|++.  +|++|+.|++|++||+.++.  
T Consensus        14 v~~~~~s~~-g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~--~l~s~s~d~~v~vwd~~~~~~~   90 (377)
T 3dwl_C           14 SYEHAFNSQ-RTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSN--RIVTCSQDRNAYVYEKRPDGTW   90 (377)
T ss_dssp             CSCCEECSS-SSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTC--CEEEEETTSSEEEC------CC
T ss_pred             EEEEEECCC-CCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCC--EEEEEeCCCeEEEEEcCCCCce
Confidence            445666765 5589999999999999997533267788999999999999999876  79999999999999999877  


Q ss_pred             -EEEEeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCe---eeEEEec-CCcceEEEEEcCCCCEEEEEeCCCeE
Q psy4650         114 -CVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHR---LEISLTY-GLERVWTISSLKGSNNVAIGYDEGSV  188 (381)
Q Consensus       114 -~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~---~~~~~~~-~~~~v~~v~~~~~~~~l~~~~~dg~v  188 (381)
                       ....+.+|...|.+++|+|++..+++++.|+.|++||+.+++   ....+.. |...|.+++|+|++.++++++.||.+
T Consensus        91 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i  170 (377)
T 3dwl_C           91 KQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKA  170 (377)
T ss_dssp             CCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCE
T ss_pred             eeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEE
Confidence             677788899999999999999999999999999999999887   4677777 89999999999999999999999999


Q ss_pred             EEEecCCCceE------EEec--CCCEEEEEecCceeecccccCCccccccCCceEEeeehHHHHHhccCCCcC
Q psy4650         189 LLKVGREEPAV------SMDV--NGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSVHVTIKYRLDISDS  254 (381)
Q Consensus       189 ~i~~~~~~~~~------~~d~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~d~~~~~~d~~~~  254 (381)
                      ++|+.....+.      .|..  ..+.++...   .+...    ...++|+|+|.++++++.++..+.|++...
T Consensus       171 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~----v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~  237 (377)
T 3dwl_C          171 YVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY---PSGGW----VHAVGFSPSGNALAYAGHDSSVTIAYPSAP  237 (377)
T ss_dssp             EEEEECCSSCC-CCCSCSSCSCCCEEEEEECC---CCSSS----EEEEEECTTSSCEEEEETTTEEC-CEECST
T ss_pred             EEEEEEecccCCCccccccccccchhhhhhcc---cCCce----EEEEEECCCCCEEEEEeCCCcEEEEECCCC
Confidence            99553211000      0000  012222211   01001    112578999999999999999999998754

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.91  E-value=9.9e-24  Score=196.23  Aligned_cols=156  Identities=10%  Similarity=0.040  Sum_probs=128.2

Q ss_pred             ceeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEE
Q psy4650          36 KVDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCV  115 (381)
Q Consensus        36 ~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~  115 (381)
                      ..++.+.|..+.++++++.||+|++||+.......+.....+...+.+++|+|++.  +|++|+.||.|++||+.. +.+
T Consensus       167 V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~g~~dg~i~~wd~~~-~~~  243 (435)
T 4e54_B          167 ITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSR--MVVTGDNVGNVILLNMDG-KEL  243 (435)
T ss_dssp             CCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTT--EEEEECSSSBEEEEESSS-CBC
T ss_pred             EEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCC--EEEEEeCCCcEeeeccCc-cee
Confidence            35677777667799999999999999986432222222333455688999999876  899999999999999864 557


Q ss_pred             EEeccCCCCEEEEEEecCCC-EEEEEeCCCCEEEEeCCCCeeeEE---EecCCcceEEEEEcCCCCEEEEEeCCCeEEEE
Q psy4650         116 QTLEGHGQNISAVCFHPELP-IVITGSEDGSVRVWHSGTHRLEIS---LTYGLERVWTISSLKGSNNVAIGYDEGSVLLK  191 (381)
Q Consensus       116 ~~~~~~~~~v~~~~~~p~~~-~l~s~~~d~~i~vwd~~~~~~~~~---~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~  191 (381)
                      ..+.+|...|.+++|+|++. ++++|+.|++|++||++++.....   ..+|...|.+++|+|+|.+|++++.||.+++|
T Consensus       244 ~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iw  323 (435)
T 4e54_B          244 WNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVY  323 (435)
T ss_dssp             CCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEE
T ss_pred             EEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEE
Confidence            78899999999999999887 788999999999999988765433   35688899999999999999999999999999


Q ss_pred             ecC
Q psy4650         192 VGR  194 (381)
Q Consensus       192 ~~~  194 (381)
                      +..
T Consensus       324 d~~  326 (435)
T 4e54_B          324 SAS  326 (435)
T ss_dssp             ESS
T ss_pred             ECC
Confidence            743

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.91  E-value=2.6e-23  Score=188.91  Aligned_cols=206  Identities=18%  Similarity=0.125  Sum_probs=163.3

Q ss_pred             ceeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCe--
Q psy4650          36 KVDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKT--  113 (381)
Q Consensus        36 ~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~--  113 (381)
                      ...+.+.++ +.++++++.||.|++|++.......+..+.+|.+.|.+++|+|+.+..+|++|+.|+.|++||+.++.  
T Consensus        14 v~~~~~s~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~   92 (379)
T 3jrp_A           14 IHDAVLDYY-GKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWS   92 (379)
T ss_dssp             EEEEEECSS-SSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEE
T ss_pred             EEEEEEcCC-CCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCcee
Confidence            345666766 56899999999999999875456677889999999999999987333489999999999999999987  


Q ss_pred             EEEEeccCCCCEEEEEEecC--CCEEEEEeCCCCEEEEeCCCCe--eeEEEecCCcceEEEEEcC-------------CC
Q psy4650         114 CVQTLEGHGQNISAVCFHPE--LPIVITGSEDGSVRVWHSGTHR--LEISLTYGLERVWTISSLK-------------GS  176 (381)
Q Consensus       114 ~~~~~~~~~~~v~~~~~~p~--~~~l~s~~~d~~i~vwd~~~~~--~~~~~~~~~~~v~~v~~~~-------------~~  176 (381)
                      ....+.+|...|.+++|+|+  +..+++++.|+.|++||+.++.  ....+..|...|.+++|+|             ++
T Consensus        93 ~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  172 (379)
T 3jrp_A           93 QIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKES  172 (379)
T ss_dssp             EEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTT
T ss_pred             EeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCC
Confidence            77888889999999999999  8999999999999999999873  4456678899999999999             69


Q ss_pred             CEEEEEeCCCeEEEEecCCCceEEEecCCCEEEEEecCceeecccccCCccccccCC---ceEEeeehHHHHHhccCCCc
Q psy4650         177 NNVAIGYDEGSVLLKVGREEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITA---GVVLTLSVHVTIKYRLDISD  253 (381)
Q Consensus       177 ~~l~~~~~dg~v~i~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d---g~~l~~~~~d~~~~~~d~~~  253 (381)
                      ..+++++.||.+++          ||..++...+.......  ........++|+|+   +..+++++.++....|++..
T Consensus       173 ~~l~~~~~dg~i~i----------~d~~~~~~~~~~~~~~~--~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~  240 (379)
T 3jrp_A          173 RKFVTGGADNLVKI----------WKYNSDAQTYVLESTLE--GHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDN  240 (379)
T ss_dssp             CEEEEEETTSCEEE----------EEEETTTTEEEEEEEEC--CCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESS
T ss_pred             CEEEEEeCCCeEEE----------EEecCCCcceeeEEEEe--cccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCC
Confidence            99999999999999          55543321111110000  00000111578899   89999999999999999875


Q ss_pred             C
Q psy4650         254 S  254 (381)
Q Consensus       254 ~  254 (381)
                      .
T Consensus       241 ~  241 (379)
T 3jrp_A          241 E  241 (379)
T ss_dssp             T
T ss_pred             C
Confidence            4

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.91  E-value=4.6e-24  Score=189.93  Aligned_cols=204  Identities=14%  Similarity=0.127  Sum_probs=155.2

Q ss_pred             eeeeecCC-CceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCe--
Q psy4650          37 VDITTNKD-MIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKT--  113 (381)
Q Consensus        37 ~~i~~~~~-~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~--  113 (381)
                      ..+.+.++ .+.++++++.|++|++||+..........+.+|.+.|.+++|+|++...+|++|+.|++|++||+..+.  
T Consensus        61 ~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~  140 (316)
T 3bg1_A           61 WQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQW  140 (316)
T ss_dssp             EEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCE
T ss_pred             EEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCc
Confidence            34555432 367999999999999999975433456778899999999999998444489999999999999998763  


Q ss_pred             -EEEEeccCCCCEEEEEEecC-----------------CCEEEEEeCCCCEEEEeCCCC---eeeEEEecCCcceEEEEE
Q psy4650         114 -CVQTLEGHGQNISAVCFHPE-----------------LPIVITGSEDGSVRVWHSGTH---RLEISLTYGLERVWTISS  172 (381)
Q Consensus       114 -~~~~~~~~~~~v~~~~~~p~-----------------~~~l~s~~~d~~i~vwd~~~~---~~~~~~~~~~~~v~~v~~  172 (381)
                       ....+.+|...|.+++|+|+                 +.++++|+.|++|++||+..+   .....+.+|...|.+++|
T Consensus       141 ~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~  220 (316)
T 3bg1_A          141 EVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAW  220 (316)
T ss_dssp             EECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEEC
T ss_pred             ceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEe
Confidence             23456789999999999997                 468999999999999999755   456778889999999999


Q ss_pred             cCCC----CEEEEEeCCCeEEEEecCCCceEEEecCCCEEEEEecCceeecccccCCccccccCCceEEeeehHHHHHhc
Q psy4650         173 LKGS----NNVAIGYDEGSVLLKVGREEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSVHVTIKYR  248 (381)
Q Consensus       173 ~~~~----~~l~~~~~dg~v~i~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~d~~~~~  248 (381)
                      +|++    ..|++|+.||.+++|.........+.   ...+ .        ........++|+|+|..|++++.|+..++
T Consensus       221 sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~---~~~~-~--------~~~~~v~~v~~sp~g~~las~~~D~~v~l  288 (316)
T 3bg1_A          221 APSIGLPTSTIASCSQDGRVFIWTCDDASSNTWS---PKLL-H--------KFNDVVWHVSWSITANILAVSGGDNKVTL  288 (316)
T ss_dssp             CCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCB---CCEE-E--------ECSSCEEEEEECTTTCCEEEEESSSCEEE
T ss_pred             cCCCCCCCceEEEEcCCCeEEEEEccCccccchh---hhhh-h--------cCCCcEEEEEEcCCCCEEEEEcCCCeEEE
Confidence            9986    79999999999999543220000000   0011 0        00111112678999999999999999999


Q ss_pred             cCCC
Q psy4650         249 LDIS  252 (381)
Q Consensus       249 ~d~~  252 (381)
                      |+..
T Consensus       289 w~~~  292 (316)
T 3bg1_A          289 WKES  292 (316)
T ss_dssp             EEEC
T ss_pred             EEEC
Confidence            9864

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.91  E-value=5.3e-23  Score=184.28  Aligned_cols=206  Identities=14%  Similarity=0.109  Sum_probs=157.4

Q ss_pred             ceeeeecCCCceEEEEEecCCeEEEecCCCccc--eeeEeeccccccEEEEEeeeC--CCccEEEEEcCCCeEEEEECCC
Q psy4650          36 KVDITTNKDMIEYKISYQESSRVKAFNPIQVAT--LILKTLYGHEKGVNCVDYYHG--GDKPYLISGADDRLVKIWDYQN  111 (381)
Q Consensus        36 ~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~--~~~~~l~~h~~~v~~~~~~~~--~~~~~l~s~~~d~~v~vwd~~~  111 (381)
                      ..++.+.++ +.++++++.||+|++|++.....  .....+.+|.+.|.+++|+|.  +.  +|++|+.|++|++||+.+
T Consensus        14 v~~~~~~~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~--~l~s~~~dg~v~vwd~~~   90 (351)
T 3f3f_A           14 VHDVVYDFY-GRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGR--IIASASYDKTVKLWEEDP   90 (351)
T ss_dssp             EEEEEECSS-SSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCS--EEEEEETTSCEEEEEECT
T ss_pred             eeEEEEcCC-CCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCC--EEEEEcCCCeEEEEecCC
Confidence            456667765 56899999999999999864322  466778899999999999994  54  899999999999999988


Q ss_pred             C---------eEEEEeccCCCCEEEEEEecC--CCEEEEEeCCCCEEEEeCCCCee------------------------
Q psy4650         112 K---------TCVQTLEGHGQNISAVCFHPE--LPIVITGSEDGSVRVWHSGTHRL------------------------  156 (381)
Q Consensus       112 ~---------~~~~~~~~~~~~v~~~~~~p~--~~~l~s~~~d~~i~vwd~~~~~~------------------------  156 (381)
                      +         .....+.+|...|.+++|+|+  +.++++++.|+.|++||+.+++.                        
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (351)
T 3f3f_A           91 DQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSD  170 (351)
T ss_dssp             TSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCC
T ss_pred             CcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccce
Confidence            7         567888899999999999999  99999999999999999875431                        


Q ss_pred             ------------------------------------eEEEecCCcceEEEEEcCCC----CEEEEEeCCCeEEEEecCCC
Q psy4650         157 ------------------------------------EISLTYGLERVWTISSLKGS----NNVAIGYDEGSVLLKVGREE  196 (381)
Q Consensus       157 ------------------------------------~~~~~~~~~~v~~v~~~~~~----~~l~~~~~dg~v~i~~~~~~  196 (381)
                                                          ...+.+|...|.+++|+|++    .++++|+.||.+++|+-...
T Consensus       171 ~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~  250 (351)
T 3f3f_A          171 FCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEK  250 (351)
T ss_dssp             EEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEEC
T ss_pred             eEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCC
Confidence                                                33445678889999999998    78999999999999653221


Q ss_pred             ce------------------------------------EEEecCCCEEEEEecCceeecccccCC---ccccccCCceEE
Q psy4650         197 PA------------------------------------VSMDVNGCKIIWARHSEVQQANLKTMP---EVFENITAGVVL  237 (381)
Q Consensus       197 ~~------------------------------------~~~d~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~dg~~l  237 (381)
                      ..                                    ..|+.....++.         .+.++.   ..++|+|+|.++
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~h~~~v~~~~~s~~~~~l  321 (351)
T 3f3f_A          251 LSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLS---------EHDDHNGEVWSVSWNLTGTIL  321 (351)
T ss_dssp             C---------------------------------------CCSEEEEEEE---------EECTTSSCEEEEEECSSSCCE
T ss_pred             cCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEE---------EEecccccEEEEEEcCCCCEE
Confidence            00                                    000000011111         111111   126789999999


Q ss_pred             eeehHHHHHhccCCCc
Q psy4650         238 TLSVHVTIKYRLDISD  253 (381)
Q Consensus       238 ~~~~~d~~~~~~d~~~  253 (381)
                      ++++.|+..++|++..
T Consensus       322 ~s~~~dg~v~iw~~~~  337 (351)
T 3f3f_A          322 SSAGDDGKVRLWKATY  337 (351)
T ss_dssp             EEEETTSCEEEEEECT
T ss_pred             EEecCCCcEEEEecCc
Confidence            9999999999999864

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.91  E-value=9.1e-23  Score=186.30  Aligned_cols=197  Identities=9%  Similarity=-0.013  Sum_probs=158.7

Q ss_pred             eeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeee-CCCccEEEEEcCCCeEEEEECCCCeEE
Q psy4650          37 VDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYH-GGDKPYLISGADDRLVKIWDYQNKTCV  115 (381)
Q Consensus        37 ~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~-~~~~~~l~s~~~d~~v~vwd~~~~~~~  115 (381)
                      .++.+.+++..++++|+.||.|++|++..........+.+|.+.|.+++|+| ++.  +|++++.|+.|++||+.+ ...
T Consensus        77 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~--~l~s~~~d~~i~iwd~~~-~~~  153 (383)
T 3ei3_B           77 TSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTN--QLFVSSIRGATTLRDFSG-SVI  153 (383)
T ss_dssp             EEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEE--EEEEEETTTEEEEEETTS-CEE
T ss_pred             EEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCC--EEEEEeCCCEEEEEECCC-Cce
Confidence            4666777765799999999999999997644444444558999999999999 444  899999999999999986 445


Q ss_pred             EEecc---CCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCC-EEEEEeCCCeEEEE
Q psy4650         116 QTLEG---HGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSN-NVAIGYDEGSVLLK  191 (381)
Q Consensus       116 ~~~~~---~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~-~l~~~~~dg~v~i~  191 (381)
                      ..+..   |...|.+++|+|++..+++|+.|+.|++||+ +++.+..+..|...|.+++|+|++. ++++|+.||.+++ 
T Consensus       154 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~i-  231 (383)
T 3ei3_B          154 QVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKL-  231 (383)
T ss_dssp             EEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEE-
T ss_pred             EEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEE-
Confidence            55544   4478999999999999999999999999999 5778888999999999999999999 9999999999999 


Q ss_pred             ecCCCceEEEecCC----CEEEEEecCceeecccccCCccccccC-CceEEeeehHHHHHhccCCCcC
Q psy4650         192 VGREEPAVSMDVNG----CKIIWARHSEVQQANLKTMPEVFENIT-AGVVLTLSVHVTIKYRLDISDS  254 (381)
Q Consensus       192 ~~~~~~~~~~d~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~-dg~~l~~~~~d~~~~~~d~~~~  254 (381)
                               ||..+    +.++......   ..+    ..++|+| +|..+++++.++..+.|++...
T Consensus       232 ---------wd~~~~~~~~~~~~~~~~~---~~v----~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~  283 (383)
T 3ei3_B          232 ---------WDLRNIKDKNSYIAEMPHE---KPV----NAAYFNPTDSTKLLTTDQRNEIRVYSSYDW  283 (383)
T ss_dssp             ---------EEGGGCCSTTCEEEEEECS---SCE----EEEEECTTTSCEEEEEESSSEEEEEETTBT
T ss_pred             ---------EeCCCCCcccceEEEecCC---Cce----EEEEEcCCCCCEEEEEcCCCcEEEEECCCC
Confidence                     55544    3333322111   111    1157889 9999999999999999998654

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.91  E-value=3.1e-22  Score=180.94  Aligned_cols=218  Identities=15%  Similarity=0.171  Sum_probs=168.5

Q ss_pred             cceeeeecCC---CceEEEEEecCCeEEEecCCCccceeeEeecc-----ccccEEEEEeeeCCC--ccEEEEEcCCCeE
Q psy4650          35 TKVDITTNKD---MIEYKISYQESSRVKAFNPIQVATLILKTLYG-----HEKGVNCVDYYHGGD--KPYLISGADDRLV  104 (381)
Q Consensus        35 ~~~~i~~~~~---~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~-----h~~~v~~~~~~~~~~--~~~l~s~~~d~~v  104 (381)
                      ....+.+.+.   +...+++++.++.|++|+....  ..+..+..     |.+.|.+++|+|++.  ..+|++|+.||.|
T Consensus        20 ~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i   97 (366)
T 3k26_A           20 PLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQ--GEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGII   97 (366)
T ss_dssp             CEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGG--GCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEE
T ss_pred             ceEEEEEecccCCCCceEEEECCCCEEEEEEcCCC--cEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEE
Confidence            3456666652   4556666677779999998742  23333433     668899999999844  3489999999999


Q ss_pred             EEEECCCCeEEEEeccCCCCEEEEEEec-CCCEEEEEeCCCCEEEEeCCCCeeeEEE---ecCCcceEEEEEcCCCCEEE
Q psy4650         105 KIWDYQNKTCVQTLEGHGQNISAVCFHP-ELPIVITGSEDGSVRVWHSGTHRLEISL---TYGLERVWTISSLKGSNNVA  180 (381)
Q Consensus       105 ~vwd~~~~~~~~~~~~~~~~v~~~~~~p-~~~~l~s~~~d~~i~vwd~~~~~~~~~~---~~~~~~v~~v~~~~~~~~l~  180 (381)
                      ++||+.+++.+..+.+|...|.+++|+| ++..+++|+.|+.|++||+.+++....+   ..|...|.+++|+|++.+++
T Consensus        98 ~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  177 (366)
T 3k26_A           98 RIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIM  177 (366)
T ss_dssp             EEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEE
T ss_pred             EEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEE
Confidence            9999999999999999999999999999 8899999999999999999999998888   67999999999999999999


Q ss_pred             EEeCCCeEEEEecCC-------------------------------------------------CceEEEecCCCEEEEE
Q psy4650         181 IGYDEGSVLLKVGRE-------------------------------------------------EPAVSMDVNGCKIIWA  211 (381)
Q Consensus       181 ~~~~dg~v~i~~~~~-------------------------------------------------~~~~~~d~~~~~~~~~  211 (381)
                      +++.||.+++|+...                                                 ..+++-..++...+|+
T Consensus       178 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~~wd  257 (366)
T 3k26_A          178 SCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWLGDLILSKSCENAIVCWK  257 (366)
T ss_dssp             EEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEETTEEEEECSSSEEEEEE
T ss_pred             EecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEcCCEEEEEecCCEEEEEe
Confidence            999999999997442                                                 1222333344556676


Q ss_pred             ecCcee--------------ecccccCC---ccccccCC--ceEEeeehHHHHHhccCCCcC
Q psy4650         212 RHSEVQ--------------QANLKTMP---EVFENITA--GVVLTLSVHVTIKYRLDISDS  254 (381)
Q Consensus       212 ~~~~~~--------------~~~~~~~~---~~~~~~~d--g~~l~~~~~d~~~~~~d~~~~  254 (381)
                      ......              ...+..+.   ..+.|+|+  |.++++++.++..+.|++...
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~  319 (366)
T 3k26_A          258 PGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVE  319 (366)
T ss_dssp             ESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSS
T ss_pred             CCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCC
Confidence            544321              11111111   12577888  999999999999999998754

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.91  E-value=2.4e-23  Score=191.47  Aligned_cols=201  Identities=17%  Similarity=0.111  Sum_probs=162.4

Q ss_pred             ceeeeecCCCceEEEEEecCCeEEEecCCCccc-----eeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECC
Q psy4650          36 KVDITTNKDMIEYKISYQESSRVKAFNPIQVAT-----LILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQ  110 (381)
Q Consensus        36 ~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~-----~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~  110 (381)
                      ..++.+.+....++++++.||+|++|++.....     ..+..+.+|.+.|.+++|+|++. .+|++|+.|++|++||+.
T Consensus        84 V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~-~~l~s~~~dg~i~iwd~~  162 (402)
T 2aq5_A           84 VLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQ-NVLLSAGCDNVILVWDVG  162 (402)
T ss_dssp             EEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBT-TEEEEEETTSCEEEEETT
T ss_pred             EEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCC-CEEEEEcCCCEEEEEECC
Confidence            356777774577999999999999999875321     45778899999999999999874 389999999999999999


Q ss_pred             CCeEEEEe--ccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEE-ecCCcc-eEEEEEcCCCCEEEEE---e
Q psy4650         111 NKTCVQTL--EGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISL-TYGLER-VWTISSLKGSNNVAIG---Y  183 (381)
Q Consensus       111 ~~~~~~~~--~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~-~~~~~~-v~~v~~~~~~~~l~~~---~  183 (381)
                      +++.+..+  .+|...|.+++|+|++..+++++.|+.|++||+++++.+..+ ..|... +.++.|+|++.++++|   +
T Consensus       163 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~  242 (402)
T 2aq5_A          163 TGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRM  242 (402)
T ss_dssp             TTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTT
T ss_pred             CCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCC
Confidence            99999999  889999999999999999999999999999999999999888 677665 8999999999999999   7


Q ss_pred             CCCeEEEEecCCCceEEEecCCCEE---EEEecCceeecccccCCccccccCCceEEee-ehHHHHHhccCCCcC
Q psy4650         184 DEGSVLLKVGREEPAVSMDVNGCKI---IWARHSEVQQANLKTMPEVFENITAGVVLTL-SVHVTIKYRLDISDS  254 (381)
Q Consensus       184 ~dg~v~i~~~~~~~~~~~d~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~-~~~d~~~~~~d~~~~  254 (381)
                      .|+.+++          ||..++..   ......       ......+.|+|+|..+++ +..++.++.|++...
T Consensus       243 ~d~~i~i----------wd~~~~~~~~~~~~~~~-------~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~  300 (402)
T 2aq5_A          243 SERQVAL----------WDTKHLEEPLSLQELDT-------SSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSE  300 (402)
T ss_dssp             CCEEEEE----------EETTBCSSCSEEEECCC-------CSSCEEEEEETTTTEEEEEETTCSCEEEEEECSS
T ss_pred             CCceEEE----------EcCccccCCceEEeccC-------CCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCC
Confidence            8999999          55543221   111110       011112567899988864 556888889988654

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.91  E-value=8.9e-24  Score=199.89  Aligned_cols=198  Identities=10%  Similarity=0.027  Sum_probs=155.7

Q ss_pred             eeeeecCC-----CceEEEEEecCCeEEEecCCCccc---------eeeEeeccccccEEEEEeeeCCCccEEEEEcCCC
Q psy4650          37 VDITTNKD-----MIEYKISYQESSRVKAFNPIQVAT---------LILKTLYGHEKGVNCVDYYHGGDKPYLISGADDR  102 (381)
Q Consensus        37 ~~i~~~~~-----~~~~~~s~~~d~~v~i~~~~~~~~---------~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~  102 (381)
                      ..+.+.++     ...+|++++.||+|++|++.....         .....+.+|...|.+++|+|++   .|++|+.||
T Consensus       211 ~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~---~lasgs~Dg  287 (524)
T 2j04_B          211 WDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT---TVVCGFKNG  287 (524)
T ss_dssp             EEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS---EEEEEETTS
T ss_pred             EEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCC---eEEEEeCCC
Confidence            45666664     256999999999999999864321         1234788999999999999753   699999999


Q ss_pred             eEEEEECCCC-eEEEEeccCCCCEEEE--EEecCC-CEEEEEeCCCCEEEEeCCCCeeeEEEecCCc--ceEEEEEcCCC
Q psy4650         103 LVKIWDYQNK-TCVQTLEGHGQNISAV--CFHPEL-PIVITGSEDGSVRVWHSGTHRLEISLTYGLE--RVWTISSLKGS  176 (381)
Q Consensus       103 ~v~vwd~~~~-~~~~~~~~~~~~v~~~--~~~p~~-~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~--~v~~v~~~~~~  176 (381)
                      +|++||+.++ .+...+.+|..+|.++  +|+|++ .+|++|+.|++|+|||+++++....+.+|..  .|.+++|+|++
T Consensus       288 tV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~  367 (524)
T 2j04_B          288 FVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQI  367 (524)
T ss_dssp             EEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTT
T ss_pred             EEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCc
Confidence            9999999876 4556788999999999  578887 8999999999999999999887777766543  57899999999


Q ss_pred             CEEEEEeCCCeEEEEecCCCceEEEecCCCEEEEEecCceeecccccCCccccccCCceEEeeehHHHHHhccCCCc
Q psy4650         177 NNVAIGYDEGSVLLKVGREEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSVHVTIKYRLDISD  253 (381)
Q Consensus       177 ~~l~~~~~dg~v~i~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~d~~~~~~d~~~  253 (381)
                      ..+++++.|+.+++          ||..++..+..+..+  ...+    ..++|+|+|..+++++.|+.+..|++..
T Consensus       368 ~~l~s~~~d~tv~l----------wd~~~~~~~~~l~gH--~~~V----~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~  428 (524)
T 2j04_B          368 YSYIYSDGASSLRA----------VPSRAAFAVHPLVSR--ETTI----TAIGVSRLHPMVLAGSADGSLIITNAAR  428 (524)
T ss_dssp             TEEEEECSSSEEEE----------EETTCTTCCEEEEEC--SSCE----EEEECCSSCCBCEEEETTTEEECCBSCS
T ss_pred             CeEEEeCCCCcEEE----------EECcccccceeeecC--CCce----EEEEeCCCCCeEEEEECCCEEEEEechH
Confidence            99999999999999          666554432222111  1111    1157899999999999999999999754

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.90  E-value=5.6e-22  Score=177.18  Aligned_cols=198  Identities=15%  Similarity=0.128  Sum_probs=164.5

Q ss_pred             ceeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEE
Q psy4650          36 KVDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCV  115 (381)
Q Consensus        36 ~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~  115 (381)
                      ...+...++ +.++++++.|+.+++|++..........+.+|...|.+++|+|++.  ++++++.|+.|++||+.+++..
T Consensus       100 v~~~~~~~~-~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~l~~~~~dg~v~~~d~~~~~~~  176 (337)
T 1gxr_A          100 IRSCKLLPD-GCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSK--VCFSCCSDGNIAVWDLHNQTLV  176 (337)
T ss_dssp             EEEEEECTT-SSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSS--EEEEEETTSCEEEEETTTTEEE
T ss_pred             EEEEEEcCC-CCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCC--EEEEEeCCCcEEEEeCCCCcee
Confidence            345666665 5689999999999999997655556778889999999999999776  8999999999999999999999


Q ss_pred             EEeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCC
Q psy4650         116 QTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKVGRE  195 (381)
Q Consensus       116 ~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~~~~  195 (381)
                      ..+.+|...+.+++|+|++..+++++.|+.|++||+.+++....+. +...+.+++|+|++..+++++.+|.+++     
T Consensus       177 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~~i~~-----  250 (337)
T 1gxr_A          177 RQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEV-----  250 (337)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEEE-----
T ss_pred             eeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeec-CCCceEEEEECCCCCEEEEEcCCCcEEE-----
Confidence            9999999999999999999999999999999999999999888775 6688999999999999999999999999     


Q ss_pred             CceEEEecCCCEEEEEecCceeecccccCCccccccCCceEEeeehHHHHHhccCCCcC
Q psy4650         196 EPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSVHVTIKYRLDISDS  254 (381)
Q Consensus       196 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~d~~~~~~d~~~~  254 (381)
                           ||..++........       ......+.|+|+|..+++++.++..+.|++...
T Consensus       251 -----~~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~  297 (337)
T 1gxr_A          251 -----LHVNKPDKYQLHLH-------ESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYG  297 (337)
T ss_dssp             -----EETTSSCEEEECCC-------SSCEEEEEECTTSSEEEEEETTSEEEEEETTTC
T ss_pred             -----EECCCCCeEEEcCC-------ccceeEEEECCCCCEEEEecCCCcEEEEECCCC
Confidence                 55555443211111       011112578899999999999999999998653

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=99.90  E-value=8.2e-23  Score=188.75  Aligned_cols=200  Identities=15%  Similarity=0.058  Sum_probs=160.9

Q ss_pred             eeecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEEEe
Q psy4650          39 ITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTL  118 (381)
Q Consensus        39 i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~  118 (381)
                      +.+.++ +.++++++.|+.+++|+...  ......+.+| ..+....|+|++.  +|++|+.|+.|++||+.++.....+
T Consensus        62 ~~~s~~-g~~l~~~~~d~~v~i~d~~~--~~~~~~~~~~-~~~~~~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~  135 (420)
T 3vl1_A           62 NTFEKV-GSHLYKARLDGHDFLFNTII--RDGSKMLKRA-DYTAVDTAKLQMR--RFILGTTEGDIKVLDSNFNLQREID  135 (420)
T ss_dssp             CEEEEE-ETTEEEEEETTEEEEEECCS--EETTTTSCSC-CEEEEEEECSSSC--EEEEEETTSCEEEECTTSCEEEEET
T ss_pred             eeeeec-CCeEEEEEcCCcEEEEEecc--cceeeEEecC-CceEEEEEecCCC--EEEEEECCCCEEEEeCCCcceeeec
Confidence            444444 55789999999999999864  3333445555 4445556788776  8999999999999999999998888


Q ss_pred             ccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCce
Q psy4650         119 EGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKVGREEPA  198 (381)
Q Consensus       119 ~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~~~~~~~  198 (381)
                      .+|.+.|.+++|+|++.++++|+.|+.|++||+.+++....+.+|...|.+++|+|++..+++++.||.+++        
T Consensus       136 ~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~i--------  207 (420)
T 3vl1_A          136 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRL--------  207 (420)
T ss_dssp             TSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEE--------
T ss_pred             ccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEE--------
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999        


Q ss_pred             EEEecCCCEEEEEecCceee-cc---c--------------ccCCccccccCCceEEeeehHHHHHhccCCCcC
Q psy4650         199 VSMDVNGCKIIWARHSEVQQ-AN---L--------------KTMPEVFENITAGVVLTLSVHVTIKYRLDISDS  254 (381)
Q Consensus       199 ~~~d~~~~~~~~~~~~~~~~-~~---~--------------~~~~~~~~~~~dg~~l~~~~~d~~~~~~d~~~~  254 (381)
                        ||..++..+......... ..   +              ......++|+|+|..++++..++..+.||+...
T Consensus       208 --wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~  279 (420)
T 3vl1_A          208 --WECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSK  279 (420)
T ss_dssp             --EETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTC
T ss_pred             --eECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCC
Confidence              666666666554321100 00   0              011112678999999999999999999998654

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.90  E-value=1.3e-22  Score=184.27  Aligned_cols=196  Identities=7%  Similarity=0.036  Sum_probs=150.8

Q ss_pred             eeeecCCCceE-EEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEE
Q psy4650          38 DITTNKDMIEY-KISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQ  116 (381)
Q Consensus        38 ~i~~~~~~~~~-~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~  116 (381)
                      .+.+.|++..+ +++++.|++|++||+..  ...+..+ .|.+.|.+++|+|++.  ++++++.+ .+.+|+..++....
T Consensus       138 ~v~fSpDg~~la~as~~~d~~i~iwd~~~--~~~~~~~-~~~~~V~~v~fspdg~--~l~s~s~~-~~~~~~~~~~~~~~  211 (365)
T 4h5i_A          138 LVYISREGTVAAIASSKVPAIMRIIDPSD--LTEKFEI-ETRGEVKDLHFSTDGK--VVAYITGS-SLEVISTVTGSCIA  211 (365)
T ss_dssp             EEEECTTSSCEEEEESCSSCEEEEEETTT--TEEEEEE-ECSSCCCEEEECTTSS--EEEEECSS-CEEEEETTTCCEEE
T ss_pred             EEEEcCCCCEEEEEECCCCCEEEEeECCC--CcEEEEe-CCCCceEEEEEccCCc--eEEeccce-eEEEEEeccCccee
Confidence            45567765433 34566799999999974  3445555 4788899999999887  78888855 55666666665443


Q ss_pred             --EeccCCCCEEEEEEecCCCEEEEEeCCC----CEEEEeCCCCee----eEEEecCCcceEEEEEcCCCCEEEEEeCCC
Q psy4650         117 --TLEGHGQNISAVCFHPELPIVITGSEDG----SVRVWHSGTHRL----EISLTYGLERVWTISSLKGSNNVAIGYDEG  186 (381)
Q Consensus       117 --~~~~~~~~v~~~~~~p~~~~l~s~~~d~----~i~vwd~~~~~~----~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg  186 (381)
                        ...+|...|.+++|+|++..+++++.|+    .+++||+..+..    ...+.+|...|++++|+|+|++||+|+.|+
T Consensus       212 ~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~  291 (365)
T 4h5i_A          212 RKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDN  291 (365)
T ss_dssp             EECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTS
T ss_pred             eeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCC
Confidence              4467888999999999999999998877    688899876653    345677889999999999999999999999


Q ss_pred             eEEEEecCCCceEEEecCCCEEEEEecCceeecccccCCccccccCCceEEeeehHHHHHhccCCCcC
Q psy4650         187 SVLLKVGREEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSVHVTIKYRLDISDS  254 (381)
Q Consensus       187 ~v~i~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~d~~~~~~d~~~~  254 (381)
                      .|++          ||..+++++...... +...+.    .++|+|||++|++++.|+++++|++..+
T Consensus       292 ~V~i----------wd~~~~~~~~~~~~g-H~~~V~----~v~fSpdg~~laS~S~D~tvrvw~ip~~  344 (365)
T 4h5i_A          292 SIAL----------VKLKDLSMSKIFKQA-HSFAIT----EVTISPDSTYVASVSAANTIHIIKLPLN  344 (365)
T ss_dssp             CEEE----------EETTTTEEEEEETTS-SSSCEE----EEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred             EEEE----------EECCCCcEEEEecCc-ccCCEE----EEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence            9999          888888877654211 111111    1678999999999999999999998654

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.90  E-value=3.5e-22  Score=180.60  Aligned_cols=197  Identities=14%  Similarity=0.160  Sum_probs=153.6

Q ss_pred             hcceeeeecCCC--ceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCC
Q psy4650          34 ETKVDITTNKDM--IEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQN  111 (381)
Q Consensus        34 ~~~~~i~~~~~~--~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~  111 (381)
                      .....+.+.++.  +.++++++.||.|++|++..........+.+|.+.|.+++|+|++.  +|++|+.|+.|++||+.+
T Consensus        40 ~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~l~s~~~dg~v~iwd~~~  117 (368)
T 3mmy_A           40 DSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGS--KVFTASCDKTAKMWDLSS  117 (368)
T ss_dssp             SCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSS--EEEEEETTSEEEEEETTT
T ss_pred             CceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCC--EEEEEcCCCcEEEEEcCC
Confidence            344677778876  6899999999999999997534445578889999999999999776  899999999999999999


Q ss_pred             CeEEEEeccCCCCEEEEEE--ecCCCEEEEEeCCCCEEEEeCCCCeeeEEEe----------------------------
Q psy4650         112 KTCVQTLEGHGQNISAVCF--HPELPIVITGSEDGSVRVWHSGTHRLEISLT----------------------------  161 (381)
Q Consensus       112 ~~~~~~~~~~~~~v~~~~~--~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~----------------------------  161 (381)
                      +.... +.+|...|.+++|  +|++.++++++.|+.|++||+++++.+..+.                            
T Consensus       118 ~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  196 (368)
T 3mmy_A          118 NQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQ  196 (368)
T ss_dssp             TEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEETTEEEEEEGGGCEEEEE
T ss_pred             CCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecCCeeEEEeCCCcEEEEE
Confidence            98766 5569999999999  8888999999999999999998765432222                            


Q ss_pred             --------------------------------------------------------------cCCc------------ce
Q psy4650         162 --------------------------------------------------------------YGLE------------RV  167 (381)
Q Consensus       162 --------------------------------------------------------------~~~~------------~v  167 (381)
                                                                                    .|..            .|
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  276 (368)
T 3mmy_A          197 LENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAV  276 (368)
T ss_dssp             CSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCE
T ss_pred             eccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccce
Confidence                                                                          1222            47


Q ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEecCCCceEEEecCCCEEEEEecCceeecccccCCccccccCCceEEeeehHHHHHh
Q psy4650         168 WTISSLKGSNNVAIGYDEGSVLLKVGREEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSVHVTIKY  247 (381)
Q Consensus       168 ~~v~~~~~~~~l~~~~~dg~v~i~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~d~~~~  247 (381)
                      .+++|+|++.++++|+.||.+++          ||..++.++.....+.      .....++|+|+|..+++++.++...
T Consensus       277 ~~~~~sp~~~~l~s~~~dg~i~i----------wd~~~~~~~~~~~~~~------~~v~~~~~s~~g~~l~~~s~d~~~~  340 (368)
T 3mmy_A          277 NGIAFHPVHGTLATVGSDGRFSF----------WDKDARTKLKTSEQLD------QPISACCFNHNGNIFAYASSYDWSK  340 (368)
T ss_dssp             EEEEECTTTCCEEEEETTSCEEE----------EETTTTEEEEECCCCS------SCEEEEEECTTSSCEEEEECCCSTT
T ss_pred             EEEEEecCCCEEEEEccCCeEEE----------EECCCCcEEEEecCCC------CCceEEEECCCCCeEEEEecccccc
Confidence            88888888888888888888888          7777777665543221      1111267899999999998876444


Q ss_pred             cc
Q psy4650         248 RL  249 (381)
Q Consensus       248 ~~  249 (381)
                      .+
T Consensus       341 ~~  342 (368)
T 3mmy_A          341 GH  342 (368)
T ss_dssp             CG
T ss_pred             cc
Confidence            33

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.90  E-value=1.4e-22  Score=183.13  Aligned_cols=210  Identities=15%  Similarity=0.187  Sum_probs=165.6

Q ss_pred             eeeeecCCC---ceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeee-CCCccEEEEEcCCCeEEEEECCCC
Q psy4650          37 VDITTNKDM---IEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYH-GGDKPYLISGADDRLVKIWDYQNK  112 (381)
Q Consensus        37 ~~i~~~~~~---~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~-~~~~~~l~s~~~d~~v~vwd~~~~  112 (381)
                      ..+.+.++.   +.++++++.||.|++|++..  ...+..+.+|.+.|.+++|+| ++.  +|++|+.|+.|++||+.++
T Consensus        73 ~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~--~~~~~~~~~~~~~i~~~~~~~~~~~--~l~s~~~dg~i~iwd~~~~  148 (366)
T 3k26_A           73 YTCAWTYDSNTSHPLLAVAGSRGIIRIINPIT--MQCIKHYVGHGNAINELKFHPRDPN--LLLSVSKDHALRLWNIQTD  148 (366)
T ss_dssp             EEEEEEECTTTCCEEEEEEETTCEEEEECTTT--CCEEEEEESCCSCEEEEEECSSCTT--EEEEEETTSCEEEEETTTT
T ss_pred             EEEEeccCCCCCCCEEEEecCCCEEEEEEchh--ceEeeeecCCCCcEEEEEECCCCCC--EEEEEeCCCeEEEEEeecC
Confidence            445555442   56999999999999999874  456778889999999999999 665  8999999999999999999


Q ss_pred             eEEEEe---ccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEe----------------------------
Q psy4650         113 TCVQTL---EGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLT----------------------------  161 (381)
Q Consensus       113 ~~~~~~---~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~----------------------------  161 (381)
                      +.+..+   .+|...|.+++|+|++..+++++.|+.|++||+.+++....+.                            
T Consensus       149 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (366)
T 3k26_A          149 TLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRD  228 (366)
T ss_dssp             EEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECS
T ss_pred             eEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCcccccc
Confidence            988888   7899999999999999999999999999999999876544333                            


Q ss_pred             cCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCC---------------------------------------CceEEEe
Q psy4650         162 YGLERVWTISSLKGSNNVAIGYDEGSVLLKVGRE---------------------------------------EPAVSMD  202 (381)
Q Consensus       162 ~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~~~~---------------------------------------~~~~~~d  202 (381)
                      .|...|.+++|+  +.++++++.||.+++|+...                                       ..+++-.
T Consensus       229 ~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~  306 (366)
T 3k26_A          229 IHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGN  306 (366)
T ss_dssp             SCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEEC
T ss_pred             CCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEe
Confidence            288889999998  67999999999999997322                                       2223333


Q ss_pred             cCCCEEEEEecCceeec----ccccC-----CccccccCCceEEeeehHHHHHhccCCC
Q psy4650         203 VNGCKIIWARHSEVQQA----NLKTM-----PEVFENITAGVVLTLSVHVTIKYRLDIS  252 (381)
Q Consensus       203 ~~~~~~~~~~~~~~~~~----~~~~~-----~~~~~~~~dg~~l~~~~~d~~~~~~d~~  252 (381)
                      .++...+|+........    .+.++     ...++|+|+|..+++++.++..++|++.
T Consensus       307 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~  365 (366)
T 3k26_A          307 QVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL  365 (366)
T ss_dssp             TTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred             cCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence            34556778776542211    23322     1126889999999999999999999864

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.90  E-value=8e-22  Score=176.17  Aligned_cols=198  Identities=14%  Similarity=0.164  Sum_probs=163.9

Q ss_pred             ceeeeecCCCceEEEEEecCCeEEEecCCCccc-eeeEeec--cccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCC
Q psy4650          36 KVDITTNKDMIEYKISYQESSRVKAFNPIQVAT-LILKTLY--GHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNK  112 (381)
Q Consensus        36 ~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~-~~~~~l~--~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~  112 (381)
                      ...+...++ +.++++++ ||.+++|++..... ..+..+.  +|...|.+++|+|++.  ++++++.|+.|++||+.++
T Consensus        54 v~~~~~~~~-~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~~~d~~~~  129 (337)
T 1gxr_A           54 VCAVTISNP-TRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGC--TLIVGGEASTLSIWDLAAP  129 (337)
T ss_dssp             CCEEEECSS-SSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSS--EEEEEESSSEEEEEECCCC
T ss_pred             eEEEEEecC-CcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCC--EEEEEcCCCcEEEEECCCC
Confidence            345666665 55788888 99999999864321 2233333  7999999999999776  8999999999999999988


Q ss_pred             e--EEEEeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCCCeEEE
Q psy4650         113 T--CVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLL  190 (381)
Q Consensus       113 ~--~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i  190 (381)
                      .  ....+.+|...|.+++|+|++..+++++.|+.|++||+.+++....+..|...+.+++|+|++..+++++.||.+++
T Consensus       130 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~  209 (337)
T 1gxr_A          130 TPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRS  209 (337)
T ss_dssp             --EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred             CcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEE
Confidence            7  66778889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCCceEEEecCCCEEEEEecCceeecccccCCccccccCCceEEeeehHHHHHhccCCCcC
Q psy4650         191 KVGREEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSVHVTIKYRLDISDS  254 (381)
Q Consensus       191 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~d~~~~~~d~~~~  254 (381)
                                ||..++..+........       ...+.++|+|..++++..++..+.|++...
T Consensus       210 ----------~d~~~~~~~~~~~~~~~-------v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~  256 (337)
T 1gxr_A          210 ----------WDLREGRQLQQHDFTSQ-------IFSLGYCPTGEWLAVGMESSNVEVLHVNKP  256 (337)
T ss_dssp             ----------EETTTTEEEEEEECSSC-------EEEEEECTTSSEEEEEETTSCEEEEETTSS
T ss_pred             ----------EECCCCceEeeecCCCc-------eEEEEECCCCCEEEEEcCCCcEEEEECCCC
Confidence                      78777776655432211       112567899999999999999999988654

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.90  E-value=1.9e-22  Score=176.35  Aligned_cols=188  Identities=8%  Similarity=-0.058  Sum_probs=144.1

Q ss_pred             ceEEEEEe--cCCeEEEecCCCccceeeEeeccccccEEEEEeee-CCCccEEEEEcCCCeEEEEECCCCeEEEEeccCC
Q psy4650          46 IEYKISYQ--ESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYH-GGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHG  122 (381)
Q Consensus        46 ~~~~~s~~--~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~-~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~  122 (381)
                      ++.+.+++  .|++|++|++.. ....+..+.+|...+..++|+| +|+..+|++|+.|++|++||+.+++++.++.+|.
T Consensus       145 g~lv~ss~~g~d~~V~~~~~s~-dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~  223 (356)
T 2w18_A          145 RRLVSSSGTLSDQQVEVMTFAE-DGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDD  223 (356)
T ss_dssp             TEEEEEESSSTTCEEEEEEECT-TSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC
T ss_pred             CcEEEecccCCCCcEEEEEECC-CCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCC
Confidence            44444533  599999999854 3456778889999999999999 5555699999999999999999999999998754


Q ss_pred             ---CCEEEEEEecCCCEE------------EEEeCCCCEEEEeCCCCeeeEEE-----ecCCcceEEEEEcCCCCEEEEE
Q psy4650         123 ---QNISAVCFHPELPIV------------ITGSEDGSVRVWHSGTHRLEISL-----TYGLERVWTISSLKGSNNVAIG  182 (381)
Q Consensus       123 ---~~v~~~~~~p~~~~l------------~s~~~d~~i~vwd~~~~~~~~~~-----~~~~~~v~~v~~~~~~~~l~~~  182 (381)
                         ..+.+++|+|+|.++            ++|+.|+++++||..+++.+..+     .+|...+.+..++  +..++++
T Consensus       224 ~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASg  301 (356)
T 2w18_A          224 SYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVK--DHCAAAI  301 (356)
T ss_dssp             ---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEE--TTEEEEE
T ss_pred             cceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccC--CCEEEEE
Confidence               367788999999875            67888999999999999987765     2455554444443  7789999


Q ss_pred             eCCCeEEEEecCCCceEEEecCCCEEEEEecCceeecccccCCccccccCCceEEeeehHHHHHhccCC
Q psy4650         183 YDEGSVLLKVGREEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSVHVTIKYRLDI  251 (381)
Q Consensus       183 ~~dg~v~i~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~d~~~~~~d~  251 (381)
                      +.||+|++          ||..+++.+..+..+...     ....++|+|||.+|++++.|+++++|++
T Consensus       302 S~DgTIkI----------WDl~tGk~l~tL~gH~~~-----vvs~vafSPDG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          302 LTSGTIAI----------WDLLLGQCTALLPPVSDQ-----HWSFVKWSGTDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             ETTSCEEE----------EETTTCSEEEEECCC--C-----CCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred             cCCCcEEE----------EECCCCcEEEEecCCCCC-----eEEEEEECCCCCEEEEEECCCcEEEecC
Confidence            99999999          888888877665432211     1111478999999999999999999975

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.90  E-value=9.2e-23  Score=187.10  Aligned_cols=148  Identities=15%  Similarity=0.128  Sum_probs=122.7

Q ss_pred             CCCceEEEEEecCCeEEEecCCCccc---eeeEeeccccccEEEEEeee--------CCCccEEEEEcCCCeEEEEECCC
Q psy4650          43 KDMIEYKISYQESSRVKAFNPIQVAT---LILKTLYGHEKGVNCVDYYH--------GGDKPYLISGADDRLVKIWDYQN  111 (381)
Q Consensus        43 ~~~~~~~~s~~~d~~v~i~~~~~~~~---~~~~~l~~h~~~v~~~~~~~--------~~~~~~l~s~~~d~~v~vwd~~~  111 (381)
                      +....++++++.|++|++||......   ..+..+.||.+.|.+++|+|        ++.  +|+|||.|++|++||+.+
T Consensus        98 ~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~--~las~s~D~tv~~Wd~~~  175 (393)
T 4gq1_A           98 PVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQ--VIASVGDDCTLIIWRLTD  175 (393)
T ss_dssp             CEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEE--EEEEEETTSEEEEEEEET
T ss_pred             CCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCC--EEEEEECCCeEEEEECCC
Confidence            34467899999999999999864322   23456889999999999998        443  899999999999999999


Q ss_pred             CeEEEEeccCCCCEEEEEEecCCC-EEEEEeCCCCEEEEeCCCCeeeEEE-------------------------ecCCc
Q psy4650         112 KTCVQTLEGHGQNISAVCFHPELP-IVITGSEDGSVRVWHSGTHRLEISL-------------------------TYGLE  165 (381)
Q Consensus       112 ~~~~~~~~~~~~~v~~~~~~p~~~-~l~s~~~d~~i~vwd~~~~~~~~~~-------------------------~~~~~  165 (381)
                      +.+...+.+|..+|.+++|+|++. ++++|+.|++|++||+.+++.....                         .+|..
T Consensus       176 ~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~  255 (393)
T 4gq1_A          176 EGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIAS  255 (393)
T ss_dssp             TEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSS
T ss_pred             CceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccc
Confidence            888888888999999999999885 8999999999999999987654322                         24566


Q ss_pred             ceEEEEEc-CCCCEEEEEeCCCeEEEEe
Q psy4650         166 RVWTISSL-KGSNNVAIGYDEGSVLLKV  192 (381)
Q Consensus       166 ~v~~v~~~-~~~~~l~~~~~dg~v~i~~  192 (381)
                      .+.++.|. |++..+++++.|+.+++|+
T Consensus       256 ~v~~v~~~~~dg~~l~s~s~d~~i~vwd  283 (393)
T 4gq1_A          256 SLANVRWIGSDGSGILAMCKSGAWLRWN  283 (393)
T ss_dssp             SCSEEEEETTTTCEEEEECTTSEEEEEE
T ss_pred             cceeeeeecCCCCEEEEEeCCCCEEEEE
Confidence            78888887 7999999999999999986

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.90  E-value=2.2e-23  Score=197.26  Aligned_cols=153  Identities=15%  Similarity=0.076  Sum_probs=130.7

Q ss_pred             eeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEE--EeeeCCCccEEEEEcCCCeEEEEECCCCeE
Q psy4650          37 VDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCV--DYYHGGDKPYLISGADDRLVKIWDYQNKTC  114 (381)
Q Consensus        37 ~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~--~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~  114 (381)
                      ..+.+.++  ..+++|+.||+|++||+... ......+.+|.+.|.++  .|+|++. .+|+|||.|++|++||++++++
T Consensus       270 ~sv~~s~~--~~lasgs~DgtV~lWD~~~~-~~~~~~~~~H~~~V~sv~~~~s~~g~-~~laS~S~D~tvklWD~~~~~~  345 (524)
T 2j04_B          270 TTFDFLSP--TTVVCGFKNGFVAEFDLTDP-EVPSFYDQVHDSYILSVSTAYSDFED-TVVSTVAVDGYFYIFNPKDIAT  345 (524)
T ss_dssp             EEEEESSS--SEEEEEETTSEEEEEETTBC-SSCSEEEECSSSCEEEEEEECCTTSC-CEEEEEETTSEEEEECGGGHHH
T ss_pred             EEEEecCC--CeEEEEeCCCEEEEEECCCC-CCceEEeecccccEEEEEEEcCCCCC-eEEEEeccCCeEEEEECCCCCc
Confidence            35555553  37999999999999999742 23456688999999999  4666552 3899999999999999998877


Q ss_pred             EEEeccCCC--CEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCCCeEEEEe
Q psy4650         115 VQTLEGHGQ--NISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKV  192 (381)
Q Consensus       115 ~~~~~~~~~--~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~  192 (381)
                      ...+.+|..  .|.+++|+|++..+++++.|++|++||++++....++.+|...|++++|+|+|+.+++|+.||.+++|+
T Consensus       346 ~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd  425 (524)
T 2j04_B          346 TKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITN  425 (524)
T ss_dssp             HCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCB
T ss_pred             ccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEe
Confidence            666767653  578999999999999999999999999999998888999999999999999999999999999999986


Q ss_pred             c
Q psy4650         193 G  193 (381)
Q Consensus       193 ~  193 (381)
                      .
T Consensus       426 ~  426 (524)
T 2j04_B          426 A  426 (524)
T ss_dssp             S
T ss_pred             c
Confidence            4

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=99.90  E-value=6.7e-22  Score=190.26  Aligned_cols=191  Identities=21%  Similarity=0.317  Sum_probs=159.9

Q ss_pred             eeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEE
Q psy4650          37 VDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQ  116 (381)
Q Consensus        37 ~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~  116 (381)
                      ..+...++ +.++++++.|+++++|+.   ....+..+.+|...|.+++|+|++.  +|++++.|+.|++||. +++.+.
T Consensus       348 ~~~~~s~~-g~~l~~~~~dg~v~~~~~---~~~~~~~~~~~~~~v~~~~~s~dg~--~l~~~~~d~~v~~~~~-~~~~~~  420 (577)
T 2ymu_A          348 WGVAFSPD-GQTIASASDDKTVKLWNR---NGQLLQTLTGHSSSVRGVAFSPDGQ--TIASASDDKTVKLWNR-NGQLLQ  420 (577)
T ss_dssp             EEEEECTT-SSEEEEEETTSEEEEEET---TCCEEEEEECCSSCEEEEEECTTSS--CEEEEETTSEEEEECT-TCCEEE
T ss_pred             EEEEECCC-CCEEEEEeCCCEEEEEcC---CCCEEEEecCCCCCeEEEEECCCCC--EEEEEeCCCEEEEEeC-CCCEEE
Confidence            45566666 568999999999999996   3566788999999999999999887  7999999999999995 567788


Q ss_pred             EeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCC
Q psy4650         117 TLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKVGREE  196 (381)
Q Consensus       117 ~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~~~~~  196 (381)
                      .+.+|...|.+++|+|++.++++++.|+.|++||. +++.+..+.+|...|.+++|+|+++++++++.|+.+++      
T Consensus       421 ~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~i------  493 (577)
T 2ymu_A          421 TLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKL------  493 (577)
T ss_dssp             EEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEE------
T ss_pred             EecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEE------
Confidence            89999999999999999999999999999999996 56778888999999999999999999999999999999      


Q ss_pred             ceEEEecCCCEEEEEecCceeecccccCCccccccCCceEEeeehHHHHHhccCCC
Q psy4650         197 PAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSVHVTIKYRLDIS  252 (381)
Q Consensus       197 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~d~~~~~~d~~  252 (381)
                          ||. ++.++.....+.  ..+.    .++|+|||++|++++.|+.+++||..
T Consensus       494 ----w~~-~~~~~~~~~~h~--~~v~----~l~~s~dg~~l~s~~~dg~v~lwd~~  538 (577)
T 2ymu_A          494 ----WNR-NGQLLQTLTGHS--SSVR----GVAFSPDGQTIASASDDKTVKLWNRN  538 (577)
T ss_dssp             ----EET-TSCEEEEEECCS--SCEE----EEEECTTSSCEEEEETTSEEEEECTT
T ss_pred             ----EcC-CCCEEEEEeCCC--CCEE----EEEEcCCCCEEEEEECcCEEEEEeCC
Confidence                553 333333332211  1111    15788999999999999999999864

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.90  E-value=7.8e-22  Score=182.53  Aligned_cols=141  Identities=16%  Similarity=0.231  Sum_probs=117.6

Q ss_pred             eEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEEEeccCCCCEE
Q psy4650          47 EYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNIS  126 (381)
Q Consensus        47 ~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~  126 (381)
                      ++|+. +.|++|++||........+..+.+|.+.|++++|+|++.  +|++|+.||+|++||+.+++.+..+.+|...+.
T Consensus       117 n~lAv-gld~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~--~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~  193 (420)
T 4gga_A          117 NVLAV-ALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGN--YLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVG  193 (420)
T ss_dssp             SEEEE-EETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSS--EEEEEETTSCEEEEETTTTEEEEEECCCSSCEE
T ss_pred             CEEEE-EeCCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCC--EEEEEECCCeEEEEEcCCCcEEEEEeCCCCceE
Confidence            35555 458999999997644444445668889999999999887  899999999999999999999999999999999


Q ss_pred             EEEEecCCCEEEEEeCCCCEEEEeCCCC-eeeEEEecCCcceEEEEEcCCCCEEEEEeCCCeEEEEe
Q psy4650         127 AVCFHPELPIVITGSEDGSVRVWHSGTH-RLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKV  192 (381)
Q Consensus       127 ~~~~~p~~~~l~s~~~d~~i~vwd~~~~-~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~  192 (381)
                      +++|+  +..+++|+.|+.+++||.... ..+..+.+|...+..+.++|++.++++++.||.+++|.
T Consensus       194 ~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~  258 (420)
T 4gga_A          194 SLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWP  258 (420)
T ss_dssp             EEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             EEeeC--CCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEe
Confidence            98875  579999999999999998864 34566777888888888888888888888888887764

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.89  E-value=7.3e-22  Score=197.67  Aligned_cols=213  Identities=17%  Similarity=0.198  Sum_probs=173.3

Q ss_pred             ceeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEE
Q psy4650          36 KVDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCV  115 (381)
Q Consensus        36 ~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~  115 (381)
                      ...+.++++ +.++++++.+|.|++|+...  ...+..+.+|.++|.+++|+|++.  +|++|+.||.|++||+.+++.+
T Consensus        16 v~~i~~sp~-~~~la~~~~~g~v~iwd~~~--~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~i~vw~~~~~~~~   90 (814)
T 3mkq_A           16 VKGIDFHPT-EPWVLTTLYSGRVEIWNYET--QVEVRSIQVTETPVRAGKFIARKN--WIIVGSDDFRIRVFNYNTGEKV   90 (814)
T ss_dssp             EEEEEECSS-SSEEEEEETTSEEEEEETTT--TEEEEEEECCSSCEEEEEEEGGGT--EEEEEETTSEEEEEETTTCCEE
T ss_pred             eEEEEECCC-CCEEEEEeCCCEEEEEECCC--CceEEEEecCCCcEEEEEEeCCCC--EEEEEeCCCeEEEEECCCCcEE
Confidence            346667776 56899999999999999864  556788889999999999999876  8999999999999999999999


Q ss_pred             EEeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCC-eeeEEEecCCcceEEEEEcC-CCCEEEEEeCCCeEEEEec
Q psy4650         116 QTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTH-RLEISLTYGLERVWTISSLK-GSNNVAIGYDEGSVLLKVG  193 (381)
Q Consensus       116 ~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~-~~~~~~~~~~~~v~~v~~~~-~~~~l~~~~~dg~v~i~~~  193 (381)
                      ..+.+|.+.|.+++|+|+++.+++++.|+.|++||+.++ .....+.+|...|.+++|+| ++..+++++.||.+++|+.
T Consensus        91 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~  170 (814)
T 3mkq_A           91 VDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL  170 (814)
T ss_dssp             EEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEET
T ss_pred             EEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEEC
Confidence            999999999999999999999999999999999999987 67778888999999999999 8899999999999999973


Q ss_pred             CC--------------CceEEEec------------CCCEEEEEecCceeecccccCCc---cccccCCceEEeeehHHH
Q psy4650         194 RE--------------EPAVSMDV------------NGCKIIWARHSEVQQANLKTMPE---VFENITAGVVLTLSVHVT  244 (381)
Q Consensus       194 ~~--------------~~~~~~d~------------~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~dg~~l~~~~~d~  244 (381)
                      ..              .....|.+            ++...+|+.........+.++..   .+.|+|+|..+++++.++
T Consensus       171 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg  250 (814)
T 3mkq_A          171 GQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDG  250 (814)
T ss_dssp             TCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTS
T ss_pred             CCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCC
Confidence            21              11122222            22334565544433333333321   267899999999999999


Q ss_pred             HHhccCCCc
Q psy4650         245 IKYRLDISD  253 (381)
Q Consensus       245 ~~~~~d~~~  253 (381)
                      ....|++..
T Consensus       251 ~v~vwd~~~  259 (814)
T 3mkq_A          251 TLKIWNSST  259 (814)
T ss_dssp             CEEEEETTT
T ss_pred             eEEEEECCC
Confidence            999998764

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.89  E-value=2.3e-22  Score=182.40  Aligned_cols=211  Identities=12%  Similarity=0.051  Sum_probs=160.6

Q ss_pred             cceeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeE
Q psy4650          35 TKVDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTC  114 (381)
Q Consensus        35 ~~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~  114 (381)
                      ....+...++ +.++++++.++.|++|++.......+..+.+|.+.|.+++|+|++.  +|++++.|+.|++||+.++..
T Consensus        10 ~i~~~~~s~~-~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~l~~~~~dg~i~vwd~~~~~~   86 (372)
T 1k8k_C           10 PISCHAWNKD-RTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSN--RIVTCGTDRNAYVWTLKGRTW   86 (372)
T ss_dssp             CCCEEEECTT-SSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTT--EEEEEETTSCEEEEEEETTEE
T ss_pred             CeEEEEECCC-CCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCC--EEEEEcCCCeEEEEECCCCee
Confidence            3456667766 5689999999999999986533337788999999999999999776  899999999999999988875


Q ss_pred             EE--EeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCee---eEEE-ecCCcceEEEEEcCCCCEEEEEeCCCeE
Q psy4650         115 VQ--TLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRL---EISL-TYGLERVWTISSLKGSNNVAIGYDEGSV  188 (381)
Q Consensus       115 ~~--~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~---~~~~-~~~~~~v~~v~~~~~~~~l~~~~~dg~v  188 (381)
                      ..  .+..|...|.+++|+|++.++++++.|+.|++||+..+..   ...+ ..|...+.+++|+|++.++++++.||.+
T Consensus        87 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i  166 (372)
T 1k8k_C           87 KPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKC  166 (372)
T ss_dssp             EEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCE
T ss_pred             eeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCE
Confidence            44  3467899999999999999999999999999999988763   2333 4578899999999999999999999999


Q ss_pred             EEEecCCCce------EEEe--cCCCEEEEEecCceeecccccCCccccccCCceEEeeehHHHHHhccCCCcC
Q psy4650         189 LLKVGREEPA------VSMD--VNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSVHVTIKYRLDISDS  254 (381)
Q Consensus       189 ~i~~~~~~~~------~~~d--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~d~~~~~~d~~~~  254 (381)
                      ++|+......      ..|.  ...+..+.....+.      .....+.|+|++..+++++.++..+.|++...
T Consensus       167 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~  234 (372)
T 1k8k_C          167 RIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSC------GWVHGVCFSANGSRVAWVSHDSTVCLADADKK  234 (372)
T ss_dssp             EEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCS------SCEEEEEECSSSSEEEEEETTTEEEEEEGGGT
T ss_pred             EEEEcccccccccccccccccccchhhheEecCCCC------CeEEEEEECCCCCEEEEEeCCCEEEEEECCCC
Confidence            9954211000      0000  12333333332110      01112577899999999999999999998643

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.89  E-value=1.7e-22  Score=183.58  Aligned_cols=203  Identities=14%  Similarity=0.108  Sum_probs=158.9

Q ss_pred             eeeeecCC-CceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCe--
Q psy4650          37 VDITTNKD-MIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKT--  113 (381)
Q Consensus        37 ~~i~~~~~-~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~--  113 (381)
                      ..+.+.++ ...++++++.||.|++||+.......+..+.+|...|.+++|+|+....++++++.|+.|++||+.++.  
T Consensus        59 ~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~  138 (379)
T 3jrp_A           59 WRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTT  138 (379)
T ss_dssp             EEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCC
T ss_pred             EEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCce
Confidence            45555443 267999999999999999976444467788899999999999998212389999999999999998873  


Q ss_pred             EEEEeccCCCCEEEEEEec-------------CCCEEEEEeCCCCEEEEeCCCCe----eeEEEecCCcceEEEEEcCC-
Q psy4650         114 CVQTLEGHGQNISAVCFHP-------------ELPIVITGSEDGSVRVWHSGTHR----LEISLTYGLERVWTISSLKG-  175 (381)
Q Consensus       114 ~~~~~~~~~~~v~~~~~~p-------------~~~~l~s~~~d~~i~vwd~~~~~----~~~~~~~~~~~v~~v~~~~~-  175 (381)
                      ....+.+|...|.+++|+|             ++..+++++.|+.|++||++++.    ....+.+|...|.+++|+|+ 
T Consensus       139 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~  218 (379)
T 3jrp_A          139 SPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTV  218 (379)
T ss_dssp             CEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCC
T ss_pred             eeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCC
Confidence            4556778999999999999             68999999999999999998764    45667789999999999999 


Q ss_pred             --CCEEEEEeCCCeEEEEecCCCceEEEecCCCEE---EEEecCceeecccccCCccccccCCceEEeeehHHHHHhccC
Q psy4650         176 --SNNVAIGYDEGSVLLKVGREEPAVSMDVNGCKI---IWARHSEVQQANLKTMPEVFENITAGVVLTLSVHVTIKYRLD  250 (381)
Q Consensus       176 --~~~l~~~~~dg~v~i~~~~~~~~~~~d~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~d~~~~~~d  250 (381)
                        +.++++++.||.+++          ||..++..   ........    .......++|+|+|..+++++.++..+.|+
T Consensus       219 ~~~~~l~s~~~dg~i~i----------wd~~~~~~~~~~~~~~~~~----~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~  284 (379)
T 3jrp_A          219 LLRSYLASVSQDRTCII----------WTQDNEQGPWKKTLLKEEK----FPDVLWRASWSLSGNVLALSGGDNKVTLWK  284 (379)
T ss_dssp             SSSEEEEEEETTSCEEE----------EEESSTTSCCEEEESSSSC----CSSCEEEEEECSSSCCEEEEESSSSEEEEE
T ss_pred             CCCCeEEEEeCCCEEEE----------EeCCCCCccceeeeecccc----CCCcEEEEEEcCCCCEEEEecCCCcEEEEe
Confidence              899999999999999          55544310   00011000    111111257899999999999999999999


Q ss_pred             CCc
Q psy4650         251 ISD  253 (381)
Q Consensus       251 ~~~  253 (381)
                      +..
T Consensus       285 ~~~  287 (379)
T 3jrp_A          285 ENL  287 (379)
T ss_dssp             EEE
T ss_pred             CCC
Confidence            863

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.89  E-value=1.6e-21  Score=176.29  Aligned_cols=212  Identities=13%  Similarity=0.126  Sum_probs=160.0

Q ss_pred             ceeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEE
Q psy4650          36 KVDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCV  115 (381)
Q Consensus        36 ~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~  115 (381)
                      ...+.+.++ +.++++++.||.|++|++..  ...+..+.+|.+.|.+++|+|++.  +|++++.|+.|++||+.+++.+
T Consensus        35 v~~~~~s~~-~~~l~~~~~dg~i~vwd~~~--~~~~~~~~~h~~~v~~~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~  109 (369)
T 3zwl_B           35 LTQVKYNKE-GDLLFSCSKDSSASVWYSLN--GERLGTLDGHTGTIWSIDVDCFTK--YCVTGSADYSIKLWDVSNGQCV  109 (369)
T ss_dssp             EEEEEECTT-SCEEEEEESSSCEEEEETTT--CCEEEEECCCSSCEEEEEECTTSS--EEEEEETTTEEEEEETTTCCEE
T ss_pred             EEEEEEcCC-CCEEEEEeCCCEEEEEeCCC--chhhhhhhhcCCcEEEEEEcCCCC--EEEEEeCCCeEEEEECCCCcEE
Confidence            345666765 56999999999999999864  456788999999999999999776  8999999999999999887655


Q ss_pred             EEeccCCC------------------------------------------------------------CEEEEEEecCCC
Q psy4650         116 QTLEGHGQ------------------------------------------------------------NISAVCFHPELP  135 (381)
Q Consensus       116 ~~~~~~~~------------------------------------------------------------~v~~~~~~p~~~  135 (381)
                      ..+. |..                                                            .+.+++|+|++.
T Consensus       110 ~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (369)
T 3zwl_B          110 ATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGK  188 (369)
T ss_dssp             EEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGC
T ss_pred             EEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCC
Confidence            4433 222                                                            677777788888


Q ss_pred             EEEEEeCCCCEEEEeCCC-CeeeEEEecCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCce-EE-----------Ee
Q psy4650         136 IVITGSEDGSVRVWHSGT-HRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKVGREEPA-VS-----------MD  202 (381)
Q Consensus       136 ~l~s~~~d~~i~vwd~~~-~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~~~~~~~-~~-----------~d  202 (381)
                      .+++++.|+.|++||+.+ +.....+..|...|.+++|+|++.++++++.||.+++|+...... ..           |.
T Consensus       189 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~  268 (369)
T 3zwl_B          189 YIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYETDCPLNTAVIT  268 (369)
T ss_dssp             EEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEEC
T ss_pred             EEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeecCCCCceeEEec
Confidence            888888999999999998 788888888999999999999999999999999999987543211 11           11


Q ss_pred             cCC------------------------CEEEEEecCceeecccccCCc---cccccCCceEEeeehHHHHHhccCCCc
Q psy4650         203 VNG------------------------CKIIWARHSEVQQANLKTMPE---VFENITAGVVLTLSVHVTIKYRLDISD  253 (381)
Q Consensus       203 ~~~------------------------~~~~~~~~~~~~~~~~~~~~~---~~~~~~dg~~l~~~~~d~~~~~~d~~~  253 (381)
                      +.+                        ...+|+.........+.++..   .++|+|+|.++++++.++..++|++..
T Consensus       269 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~  346 (369)
T 3zwl_B          269 PLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEK  346 (369)
T ss_dssp             SSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEEECH
T ss_pred             CCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcCCCeEEEEECcc
Confidence            111                        122333322222222222221   167889999999999999999998864

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.89  E-value=1.2e-22  Score=187.17  Aligned_cols=216  Identities=11%  Similarity=0.104  Sum_probs=164.3

Q ss_pred             ceeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeeccc------cccEEEEEeeeCCCccEEEEEcCCC---eEEE
Q psy4650          36 KVDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGH------EKGVNCVDYYHGGDKPYLISGADDR---LVKI  106 (381)
Q Consensus        36 ~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h------~~~v~~~~~~~~~~~~~l~s~~~d~---~v~v  106 (381)
                      ...+.+.+++..++++++.|+.|++||+..  ...+..+..|      ...|.+++|+|++. .++++++.|+   .|++
T Consensus       168 v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~l~~~~~d~~~~~i~~  244 (416)
T 2pm9_A          168 VISLAWNQSLAHVFASAGSSNFASIWDLKA--KKEVIHLSYTSPNSGIKQQLSVVEWHPKNS-TRVATATGSDNDPSILI  244 (416)
T ss_dssp             CCEEEECSSCTTEEEEESSSSCEEEEETTT--TEEEEEECCCCCSSCCCCCEEEEEECSSCT-TEEEEEECCSSSCCCCE
T ss_pred             eeEEEeCCCCCcEEEEEcCCCCEEEEECCC--CCcceEEeccccccccCCceEEEEECCCCC-CEEEEEECCCCCceEEE
Confidence            456777777678999999999999999974  4455666665      78999999999864 3899999999   9999


Q ss_pred             EECCCC-eEEEEec-cCCCCEEEEEEec-CCCEEEEEeCCCCEEEEeCCCCeeeEEEecCCcceEEEEEcCCC-CEEEEE
Q psy4650         107 WDYQNK-TCVQTLE-GHGQNISAVCFHP-ELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGS-NNVAIG  182 (381)
Q Consensus       107 wd~~~~-~~~~~~~-~~~~~v~~~~~~p-~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~~l~~~  182 (381)
                      ||+.++ .+...+. +|...|.+++|+| ++.++++++.|+.|++||+.+++.+..+..|...|.+++|+|++ .+++++
T Consensus       245 ~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~  324 (416)
T 2pm9_A          245 WDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACA  324 (416)
T ss_dssp             EETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEEC
T ss_pred             EeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEE
Confidence            999986 5677787 8999999999999 89999999999999999999999999999999999999999998 899999


Q ss_pred             eCCCeEEEEecCCCceEE-E------ecCCCEEEEEecC---ce---------eecccccCCccccccCCceEEeeehHH
Q psy4650         183 YDEGSVLLKVGREEPAVS-M------DVNGCKIIWARHS---EV---------QQANLKTMPEVFENITAGVVLTLSVHV  243 (381)
Q Consensus       183 ~~dg~v~i~~~~~~~~~~-~------d~~~~~~~~~~~~---~~---------~~~~~~~~~~~~~~~~dg~~l~~~~~d  243 (381)
                      +.||.+++|+-....... .      .......+|....   +.         ............+|+|||+++++++.+
T Consensus       325 ~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d  404 (416)
T 2pm9_A          325 SFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDG  404 (416)
T ss_dssp             CSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTS
T ss_pred             ecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccceEEeeCCeEEEEeCCC
Confidence            999999997643321100 0      0000011111100   00         000011111125789999999999999


Q ss_pred             HHHhccCCCcC
Q psy4650         244 TIKYRLDISDS  254 (381)
Q Consensus       244 ~~~~~~d~~~~  254 (381)
                      +.+.+|++...
T Consensus       405 ~~v~~w~~~~~  415 (416)
T 2pm9_A          405 KGVSITNPKIS  415 (416)
T ss_dssp             SCBCCBCCCCC
T ss_pred             CeEEEEEeccC
Confidence            99999998653

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.89  E-value=1.5e-22  Score=182.15  Aligned_cols=190  Identities=10%  Similarity=0.086  Sum_probs=141.8

Q ss_pred             EEEEecCCeEEEecCCCc-------cceeeEee-ccccccEEEEEeee--CCCccEEEEEcCCCeEEEEECCCCeEEEEe
Q psy4650          49 KISYQESSRVKAFNPIQV-------ATLILKTL-YGHEKGVNCVDYYH--GGDKPYLISGADDRLVKIWDYQNKTCVQTL  118 (381)
Q Consensus        49 ~~s~~~d~~v~i~~~~~~-------~~~~~~~l-~~h~~~v~~~~~~~--~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~  118 (381)
                      +++++.|+++++|+....       ....+..+ .+|.+.|.+++|+|  ++.  ++++|+.|++|++||+.+++.....
T Consensus        88 ~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~l~s~s~dg~i~~wd~~~~~~~~~~  165 (343)
T 3lrv_A           88 IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTE--YFIWADNRGTIGFQSYEDDSQYIVH  165 (343)
T ss_dssp             EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CC--EEEEEETTCCEEEEESSSSCEEEEE
T ss_pred             eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCC--EEEEEeCCCcEEEEECCCCcEEEEE
Confidence            677777777777765421       11112333 36778999999999  776  8999999999999999999887766


Q ss_pred             cc-CCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeee-EEEec-CCcceEEEEEcCCCCEEEEEeCCCeEEEEecCC
Q psy4650         119 EG-HGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLE-ISLTY-GLERVWTISSLKGSNNVAIGYDEGSVLLKVGRE  195 (381)
Q Consensus       119 ~~-~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~-~~~~~-~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~~~~  195 (381)
                      .. |...+.+++|+|++.++++|+.|+.|++||+++++.. ..+.. |...|.+++|+|+|.+|++++ ++.+++     
T Consensus       166 ~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~i-----  239 (343)
T 3lrv_A          166 SAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVC-----  239 (343)
T ss_dssp             CCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEE-----
T ss_pred             ecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEE-----
Confidence            44 4558999999999999999999999999999999887 78888 999999999999999999999 559999     


Q ss_pred             CceEEEecCCCEEEEEecCce-eecccccCCccccccCCceEEeeehH-HHHHhccCCCc
Q psy4650         196 EPAVSMDVNGCKIIWARHSEV-QQANLKTMPEVFENITAGVVLTLSVH-VTIKYRLDISD  253 (381)
Q Consensus       196 ~~~~~~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~dg~~l~~~~~-d~~~~~~d~~~  253 (381)
                           ||.+++..+..+.... +...+..  ..++|+|+|.++++++. ++....|++..
T Consensus       240 -----wd~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~l~~~s~~d~~i~v~~~~~  292 (343)
T 3lrv_A          240 -----FDLRKDVGTLAYPTYTIPEFKTGT--VTYDIDDSGKNMIAYSNESNSLTIYKFDK  292 (343)
T ss_dssp             -----EETTSSTTCBSSCCCBC-----CC--EEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred             -----EEcCCCCcceeecccccccccccc--eEEEECCCCCEEEEecCCCCcEEEEEEcc
Confidence                 5655443222111100 0001111  12678999999999777 77788887754

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.89  E-value=5.4e-23  Score=187.25  Aligned_cols=197  Identities=10%  Similarity=0.058  Sum_probs=146.3

Q ss_pred             ceeeeecCCCceEEEEEecCCeEEEecCCCcc-ceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCe-
Q psy4650          36 KVDITTNKDMIEYKISYQESSRVKAFNPIQVA-TLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKT-  113 (381)
Q Consensus        36 ~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~-~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~-  113 (381)
                      ...+.+.++ +.++++++.|++|++|++.... ......+.+|.+.|.+++|+|++.  +|++|+.|+.|++||+.++. 
T Consensus        58 v~~~~~s~~-~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~iwd~~~~~~  134 (377)
T 3dwl_C           58 VTCVDWAPK-SNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNED--KFAVGSGARVISVCYFEQEND  134 (377)
T ss_dssp             EEEEEECTT-TCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSS--CCEEEESSSCEEECCC-----
T ss_pred             EEEEEEeCC-CCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCC--EEEEEecCCeEEEEEECCccc
Confidence            355667766 5689999999999999997533 235667889999999999999776  79999999999999999886 


Q ss_pred             --EEEEecc-CCCCEEEEEEecCCCEEEEEeCCCCEEEEeCC------------------CCeeeEEEecCCcceEEEEE
Q psy4650         114 --CVQTLEG-HGQNISAVCFHPELPIVITGSEDGSVRVWHSG------------------THRLEISLTYGLERVWTISS  172 (381)
Q Consensus       114 --~~~~~~~-~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~------------------~~~~~~~~~~~~~~v~~v~~  172 (381)
                        ....+.+ |...|.+++|+|++.++++++.|+.|++||+.                  .++.+..+ .|...|.+++|
T Consensus       135 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~  213 (377)
T 3dwl_C          135 WWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGF  213 (377)
T ss_dssp             CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEE
T ss_pred             ceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEE
Confidence              3677777 99999999999999999999999999999985                  35566666 88899999999


Q ss_pred             cCCCCEEEEEeCCCeEEEEecCCCceEEEecCCCEEEEEecCceeecccccCC---ccccccCCceEEeeehHHHHHhcc
Q psy4650         173 LKGSNNVAIGYDEGSVLLKVGREEPAVSMDVNGCKIIWARHSEVQQANLKTMP---EVFENITAGVVLTLSVHVTIKYRL  249 (381)
Q Consensus       173 ~~~~~~l~~~~~dg~v~i~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~dg~~l~~~~~d~~~~~~  249 (381)
                      +|+++++++++.||.+++          ||..++......     ...+.++.   ..+.|+|+|.++++++.+... .|
T Consensus       214 sp~~~~l~~~~~d~~i~i----------wd~~~~~~~~~~-----~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~  277 (377)
T 3dwl_C          214 SPSGNALAYAGHDSSVTI----------AYPSAPEQPPRA-----LITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LL  277 (377)
T ss_dssp             CTTSSCEEEEETTTEEC-----------CEECSTTSCEEE-----CCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EE
T ss_pred             CCCCCEEEEEeCCCcEEE----------EECCCCCCccee-----eEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EE
Confidence            999999999999999999          555444321000     00111111   125788999999998766544 55


Q ss_pred             CCC
Q psy4650         250 DIS  252 (381)
Q Consensus       250 d~~  252 (381)
                      +..
T Consensus       278 ~~~  280 (377)
T 3dwl_C          278 QGN  280 (377)
T ss_dssp             CCC
T ss_pred             EeC
Confidence            554

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.89  E-value=3.6e-21  Score=176.99  Aligned_cols=213  Identities=15%  Similarity=0.194  Sum_probs=164.1

Q ss_pred             ceeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECC-CCeE
Q psy4650          36 KVDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQ-NKTC  114 (381)
Q Consensus        36 ~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~-~~~~  114 (381)
                      ...+...++ +.++++++.||.|++|++..  ...+..+.+|...|.++.|++  .  ++++|+.|+.|++||+. .+..
T Consensus       137 v~~v~~s~~-~~~l~~~~~dg~i~iwd~~~--~~~~~~~~~~~~~v~~~~~~~--~--~l~~~~~dg~i~i~d~~~~~~~  209 (401)
T 4aez_A          137 VASVKWSHD-GSFLSVGLGNGLVDIYDVES--QTKLRTMAGHQARVGCLSWNR--H--VLSSGSRSGAIHHHDVRIANHQ  209 (401)
T ss_dssp             EEEEEECTT-SSEEEEEETTSCEEEEETTT--CCEEEEECCCSSCEEEEEEET--T--EEEEEETTSEEEEEETTSSSCE
T ss_pred             EEEEEECCC-CCEEEEECCCCeEEEEECcC--CeEEEEecCCCCceEEEEECC--C--EEEEEcCCCCEEEEecccCcce
Confidence            456667765 56899999999999999874  456788899999999999943  4  89999999999999998 4567


Q ss_pred             EEEeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEecCCcceEEEEEcCCC-CEEEEEe--CCCeEEEE
Q psy4650         115 VQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGS-NNVAIGY--DEGSVLLK  191 (381)
Q Consensus       115 ~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~~l~~~~--~dg~v~i~  191 (381)
                      ...+.+|.+.|.+++|+|++..+++|+.|+.|++||+.++.....+..|...|.+++|+|++ .++++++  .||.+++|
T Consensus       210 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~  289 (401)
T 4aez_A          210 IGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFW  289 (401)
T ss_dssp             EEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEE
T ss_pred             eeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEE
Confidence            88899999999999999999999999999999999999999999999999999999999976 4666655  79999998


Q ss_pred             ecCCC----------------------ceEEEe--cCCCEEEEEecCcee--ecccccCC---ccccccCCceEEeeehH
Q psy4650         192 VGREE----------------------PAVSMD--VNGCKIIWARHSEVQ--QANLKTMP---EVFENITAGVVLTLSVH  242 (381)
Q Consensus       192 ~~~~~----------------------~~~~~d--~~~~~~~~~~~~~~~--~~~~~~~~---~~~~~~~dg~~l~~~~~  242 (381)
                      +....                      .++...  .++...+|.......  ...+.++.   ..+.|+|+|..+++++.
T Consensus       290 d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~  369 (401)
T 4aez_A          290 NAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAAS  369 (401)
T ss_dssp             ETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECT
T ss_pred             ECCCCCEEEEEeCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeC
Confidence            73321                      111111  233345555544211  11122222   12578889999999988


Q ss_pred             HHHHhccCCCcCh
Q psy4650         243 VTIKYRLDISDSH  255 (381)
Q Consensus       243 d~~~~~~d~~~~~  255 (381)
                      ++....|++....
T Consensus       370 dg~i~iw~~~~~~  382 (401)
T 4aez_A          370 DENLKFWRVYDGD  382 (401)
T ss_dssp             TSEEEEEECCC--
T ss_pred             CCcEEEEECCCCc
Confidence            8888888886543

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.89  E-value=2.3e-21  Score=202.76  Aligned_cols=152  Identities=18%  Similarity=0.245  Sum_probs=139.5

Q ss_pred             eeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEE
Q psy4650          37 VDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQ  116 (381)
Q Consensus        37 ~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~  116 (381)
                      +.+.++++ +.++++|+.||+|++|+...  ...+..+.+|.+.|.+++|+|++.  ++++|+.|++|++||+.+++.+.
T Consensus       619 ~~~~~s~~-~~~l~s~~~d~~i~vw~~~~--~~~~~~~~~h~~~v~~~~~s~~~~--~l~s~~~d~~v~vwd~~~~~~~~  693 (1249)
T 3sfz_A          619 YHACFSQD-GQRIASCGADKTLQVFKAET--GEKLLDIKAHEDEVLCCAFSSDDS--YIATCSADKKVKIWDSATGKLVH  693 (1249)
T ss_dssp             EEEEECTT-SSEEEEEETTSCEEEEETTT--CCEEEEECCCSSCEEEEEECTTSS--EEEEEETTSEEEEEETTTCCEEE
T ss_pred             EEEEECCC-CCEEEEEeCCCeEEEEECCC--CCEEEEeccCCCCEEEEEEecCCC--EEEEEeCCCeEEEEECCCCceEE
Confidence            45666766 56899999999999999974  456788999999999999999876  89999999999999999999999


Q ss_pred             EeccCCCCEEEEEEecC--CCEEEEEeCCCCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCCCeEEEEec
Q psy4650         117 TLEGHGQNISAVCFHPE--LPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKVG  193 (381)
Q Consensus       117 ~~~~~~~~v~~~~~~p~--~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~~  193 (381)
                      .+.+|...|.+++|+|+  +..+++|+.|+.|++||+.++.....+.+|...|.+++|+|++..+++++.||.+++|+.
T Consensus       694 ~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~  772 (1249)
T 3sfz_A          694 TYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDV  772 (1249)
T ss_dssp             EEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEG
T ss_pred             EEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeC
Confidence            99999999999999994  458999999999999999999999999999999999999999999999999999999973

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.89  E-value=6.5e-22  Score=181.24  Aligned_cols=204  Identities=13%  Similarity=0.098  Sum_probs=163.2

Q ss_pred             ceeeeec----CCCceE-EEEEecCCeEEEecCCCcc----ceeeE-----ee-------ccccccEEEEEeeeCCCccE
Q psy4650          36 KVDITTN----KDMIEY-KISYQESSRVKAFNPIQVA----TLILK-----TL-------YGHEKGVNCVDYYHGGDKPY   94 (381)
Q Consensus        36 ~~~i~~~----~~~~~~-~~s~~~d~~v~i~~~~~~~----~~~~~-----~l-------~~h~~~v~~~~~~~~~~~~~   94 (381)
                      ...+...    ++ +.+ +++++.||.|++||+....    ...+.     .+       ..|...|.+++|+|++   +
T Consensus       124 v~~~~~~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~  199 (397)
T 1sq9_A          124 FWALKWGASNDRL-LSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG---L  199 (397)
T ss_dssp             EEEEEEECCC-----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS---E
T ss_pred             EEEEEEeeccCCC-CceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc---e
Confidence            4456666    55 456 9999999999999986400    22233     55       4489999999999966   7


Q ss_pred             EEEEcCCCeEEEEECCCCeEEEEecc---C---CCCEEEEEEecCCCEEEEEeCC---CCEEEEeCCCCeeeEEEec---
Q psy4650          95 LISGADDRLVKIWDYQNKTCVQTLEG---H---GQNISAVCFHPELPIVITGSED---GSVRVWHSGTHRLEISLTY---  162 (381)
Q Consensus        95 l~s~~~d~~v~vwd~~~~~~~~~~~~---~---~~~v~~~~~~p~~~~l~s~~~d---~~i~vwd~~~~~~~~~~~~---  162 (381)
                      +++++.|+.|++||+.+++.+..+..   |   ...|.+++|+|++.++++++.|   +.|++||+.+++.+..+..   
T Consensus       200 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~  279 (397)
T 1sq9_A          200 IATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTH  279 (397)
T ss_dssp             EEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--
T ss_pred             EEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcc
Confidence            99999999999999999999999998   9   9999999999999999999999   9999999999999999988   


Q ss_pred             ----------CCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCceEEEecCCCEEEEEecCceeeccc-----------
Q psy4650         163 ----------GLERVWTISSLKGSNNVAIGYDEGSVLLKVGREEPAVSMDVNGCKIIWARHSEVQQANL-----------  221 (381)
Q Consensus       163 ----------~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~-----------  221 (381)
                                |...|.+++|+|++.+|++++.||.+++          ||..++.++............           
T Consensus       280 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i----------wd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  349 (397)
T 1sq9_A          280 SSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRF----------WDVKTKERITTLNMHCDDIEIEEDILAVDEHG  349 (397)
T ss_dssp             ------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEE----------EETTTTEEEEEEECCGGGCSSGGGCCCBCTTS
T ss_pred             cccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEE----------EEcCCCceeEEEecccCcccchhhhhcccccc
Confidence                      8999999999999999999999999999          788777777665511000000           


Q ss_pred             ----ccCCccccccCCc----------eEEeeehHHHHHhccCCCc
Q psy4650         222 ----KTMPEVFENITAG----------VVLTLSVHVTIKYRLDISD  253 (381)
Q Consensus       222 ----~~~~~~~~~~~dg----------~~l~~~~~d~~~~~~d~~~  253 (381)
                          ......++|+|+|          ..+++++.++....|++..
T Consensus       350 ~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~  395 (397)
T 1sq9_A          350 DSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAG  395 (397)
T ss_dssp             CBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC
T ss_pred             ccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCC
Confidence                1111126788998          7999999999999998754

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.88  E-value=4.2e-22  Score=185.43  Aligned_cols=207  Identities=13%  Similarity=0.164  Sum_probs=154.3

Q ss_pred             hcceeeeecCCCceEEEEEecCCeEEEecCCCcc---------ceeeEeecccc------------ccEEEEEeeeCCCc
Q psy4650          34 ETKVDITTNKDMIEYKISYQESSRVKAFNPIQVA---------TLILKTLYGHE------------KGVNCVDYYHGGDK   92 (381)
Q Consensus        34 ~~~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~---------~~~~~~l~~h~------------~~v~~~~~~~~~~~   92 (381)
                      .....+.++++ +.++++|+.||.|++|+.....         ..+...+.+|.            +.|.+++|+|+++.
T Consensus        29 ~~V~~v~~s~~-g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~  107 (447)
T 3dw8_B           29 DIISTVEFNHS-GELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNA  107 (447)
T ss_dssp             GSEEEEEECSS-SSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSS
T ss_pred             CcEEEEEECCC-CCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCCc
Confidence            44556777776 6699999999999999986422         12467888998            88999999998743


Q ss_pred             cEEEEEcCCCeEEEEECCCCeEE---------------------------------------EE-eccCCCCEEEEEEec
Q psy4650          93 PYLISGADDRLVKIWDYQNKTCV---------------------------------------QT-LEGHGQNISAVCFHP  132 (381)
Q Consensus        93 ~~l~s~~~d~~v~vwd~~~~~~~---------------------------------------~~-~~~~~~~v~~~~~~p  132 (381)
                      ..+++++.|++|++||+.++...                                       .. ..+|...|.+++|+|
T Consensus       108 ~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~  187 (447)
T 3dw8_B          108 AQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINS  187 (447)
T ss_dssp             SEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECT
T ss_pred             ceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcC
Confidence            48999999999999998764331                                       12 367999999999999


Q ss_pred             CCCEEEEEeCCCCEEEEeCCC-CeeeEE-------EecCCcceEEEEEcCCC-CEEEEEeCCCeEEEEecCCCceEEEec
Q psy4650         133 ELPIVITGSEDGSVRVWHSGT-HRLEIS-------LTYGLERVWTISSLKGS-NNVAIGYDEGSVLLKVGREEPAVSMDV  203 (381)
Q Consensus       133 ~~~~l~s~~~d~~i~vwd~~~-~~~~~~-------~~~~~~~v~~v~~~~~~-~~l~~~~~dg~v~i~~~~~~~~~~~d~  203 (381)
                      ++..+++| .|+.|++||+.+ +.....       +.+|...|.+++|+|++ .++++|+.||.+++|          |.
T Consensus       188 ~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iw----------d~  256 (447)
T 3dw8_B          188 DYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLC----------DM  256 (447)
T ss_dssp             TSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEE----------ET
T ss_pred             CCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEE----------EC
Confidence            99999998 799999999994 444432       45788899999999998 999999999999995          44


Q ss_pred             CCCEE----EEEecCceee---cccc---cCCccccccCCceEEeeehHHHHHhccCCCc
Q psy4650         204 NGCKI----IWARHSEVQQ---ANLK---TMPEVFENITAGVVLTLSVHVTIKYRLDISD  253 (381)
Q Consensus       204 ~~~~~----~~~~~~~~~~---~~~~---~~~~~~~~~~dg~~l~~~~~d~~~~~~d~~~  253 (381)
                      .++..    +.....+...   ..+.   +....++|+|+|.++++++. +..++||+..
T Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~  315 (447)
T 3dw8_B          257 RASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNM  315 (447)
T ss_dssp             TTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTC
T ss_pred             cCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCC
Confidence            43332    1111111000   0000   01112678899999999988 8899999875

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.88  E-value=1.4e-21  Score=177.30  Aligned_cols=197  Identities=13%  Similarity=0.150  Sum_probs=158.7

Q ss_pred             eeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCe---
Q psy4650          37 VDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKT---  113 (381)
Q Consensus        37 ~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~---  113 (381)
                      ..+.+.++ +.++++++.||.|++|++..........+.+|...|.+++|+|++.  ++++|+.|+.|++||+..+.   
T Consensus        56 ~~~~~~~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~v~i~d~~~~~~~~  132 (372)
T 1k8k_C           56 TGVDWAPD-SNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEK--KFAVGSGSRVISICYFEQENDWW  132 (372)
T ss_dssp             EEEEEETT-TTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSS--EEEEEETTSSEEEEEEETTTTEE
T ss_pred             cEEEEeCC-CCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCC--EEEEEeCCCEEEEEEecCCCcce
Confidence            45666665 5689999999999999986543334455678999999999999876  89999999999999998875   


Q ss_pred             -EEEEeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeC------------------CCCeeeEEEecCCcceEEEEEcC
Q psy4650         114 -CVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHS------------------GTHRLEISLTYGLERVWTISSLK  174 (381)
Q Consensus       114 -~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~------------------~~~~~~~~~~~~~~~v~~v~~~~  174 (381)
                       ......+|...|.+++|+|++.++++++.|+.|++||+                  ..+..+..+..|...+.+++|+|
T Consensus       133 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  212 (372)
T 1k8k_C          133 VCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSA  212 (372)
T ss_dssp             EEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECS
T ss_pred             eeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECC
Confidence             23334678999999999999999999999999999995                  46788888888999999999999


Q ss_pred             CCCEEEEEeCCCeEEEEecCCCceEEEecCCCEEEEEecCceeecccccCCccccccCCceEEeeehHHHHHhccCCCc
Q psy4650         175 GSNNVAIGYDEGSVLLKVGREEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSVHVTIKYRLDISD  253 (381)
Q Consensus       175 ~~~~l~~~~~dg~v~i~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~d~~~~~~d~~~  253 (381)
                      ++.++++++.||.+++          ||..++.++.....+..  .+    ..++|+|+|.+++++ .++..+.|++..
T Consensus       213 ~~~~l~~~~~d~~i~i----------~d~~~~~~~~~~~~~~~--~v----~~~~~~~~~~~l~~~-~d~~i~i~~~~~  274 (372)
T 1k8k_C          213 NGSRVAWVSHDSTVCL----------ADADKKMAVATLASETL--PL----LAVTFITESSLVAAG-HDCFPVLFTYDS  274 (372)
T ss_dssp             SSSEEEEEETTTEEEE----------EEGGGTTEEEEEECSSC--CE----EEEEEEETTEEEEEE-TTSSCEEEEEET
T ss_pred             CCCEEEEEeCCCEEEE----------EECCCCceeEEEccCCC--Ce----EEEEEecCCCEEEEE-eCCeEEEEEccC
Confidence            9999999999999999          66665555544432211  11    115678999999888 778888888765

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.88  E-value=5.3e-22  Score=196.87  Aligned_cols=202  Identities=18%  Similarity=0.115  Sum_probs=163.4

Q ss_pred             ceeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCe--
Q psy4650          36 KVDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKT--  113 (381)
Q Consensus        36 ~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~--  113 (381)
                      ..++.++++ +.++++|+.||+|++|++.......+..+.+|.+.|.+++|+|+.+..++++|+.||+|++||+.++.  
T Consensus        12 V~~l~~s~d-g~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~   90 (753)
T 3jro_A           12 IHDAVLDYY-GKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWS   90 (753)
T ss_dssp             EEEECCCSS-SCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEE
T ss_pred             eEEEEECCC-CCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCccc
Confidence            345666666 55899999999999999875456677889999999999999987333489999999999999999986  


Q ss_pred             EEEEeccCCCCEEEEEEecC--CCEEEEEeCCCCEEEEeCCCC--eeeEEEecCCcceEEEEEcC-------------CC
Q psy4650         114 CVQTLEGHGQNISAVCFHPE--LPIVITGSEDGSVRVWHSGTH--RLEISLTYGLERVWTISSLK-------------GS  176 (381)
Q Consensus       114 ~~~~~~~~~~~v~~~~~~p~--~~~l~s~~~d~~i~vwd~~~~--~~~~~~~~~~~~v~~v~~~~-------------~~  176 (381)
                      ....+.+|..+|.+++|+|+  +..+++|+.||.|++||+.++  .....+.+|...|.+++|+|             ++
T Consensus        91 ~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~  170 (753)
T 3jro_A           91 QIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKES  170 (753)
T ss_dssp             EEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGG
T ss_pred             ccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCC
Confidence            67788899999999999999  899999999999999999887  34556678999999999999             58


Q ss_pred             CEEEEEeCCCeEEEEecCCCceEEEecCCC----EEEEEecCceeecccccCCccccccCC---ceEEeeehHHHHHhcc
Q psy4650         177 NNVAIGYDEGSVLLKVGREEPAVSMDVNGC----KIIWARHSEVQQANLKTMPEVFENITA---GVVLTLSVHVTIKYRL  249 (381)
Q Consensus       177 ~~l~~~~~dg~v~i~~~~~~~~~~~d~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~d---g~~l~~~~~d~~~~~~  249 (381)
                      ..+++|+.||.+++          ||..++    .+......+  ...+    ..++|+|+   |..+++++.++....|
T Consensus       171 ~~l~sgs~dg~I~i----------wd~~~~~~~~~~~~~~~~h--~~~V----~~l~~sp~~~~~~~l~s~s~Dg~I~iw  234 (753)
T 3jro_A          171 RKFVTGGADNLVKI----------WKYNSDAQTYVLESTLEGH--SDWV----RDVAWSPTVLLRSYLASVSQDRTCIIW  234 (753)
T ss_dssp             CCEEEEETTSCEEE----------EEEETTTTEEEEEEEECCC--SSCE----EEEEECCCCSSSEEEEEEESSSCEEEE
T ss_pred             CEEEEEECCCeEEE----------EeccCCcccceeeeeecCC--CCcE----EEEEeccCCCCCCEEEEEecCCEEEEe
Confidence            99999999999999          555433    222211111  1111    11577899   9999999999999999


Q ss_pred             CCCcC
Q psy4650         250 DISDS  254 (381)
Q Consensus       250 d~~~~  254 (381)
                      ++...
T Consensus       235 d~~~~  239 (753)
T 3jro_A          235 TQDNE  239 (753)
T ss_dssp             EESSS
T ss_pred             cCCCC
Confidence            88653

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.88  E-value=2.4e-21  Score=169.44  Aligned_cols=143  Identities=11%  Similarity=0.097  Sum_probs=114.9

Q ss_pred             CCceEEEEEecCCeEEEecCCCccceeeEeecccc---ccEEEEEeeeCCCccEE------------EEEcCCCeEEEEE
Q psy4650          44 DMIEYKISYQESSRVKAFNPIQVATLILKTLYGHE---KGVNCVDYYHGGDKPYL------------ISGADDRLVKIWD  108 (381)
Q Consensus        44 ~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~---~~v~~~~~~~~~~~~~l------------~s~~~d~~v~vwd  108 (381)
                      +..+++++++.|++|++||+.+  ...++++.+|.   ..+.+++|+|++.  ++            ++|+.|+++++||
T Consensus       191 g~~~~LaSgS~D~TIkIWDl~T--Gk~l~tL~g~~~~v~~v~~vafSpdG~--~lvs~s~~~~~w~laSGs~D~tIklWd  266 (356)
T 2w18_A          191 GMQEALLGTTIMNNIVIWNLKT--GQLLKKMHIDDSYQASVCHKAYSEMGL--LFIVLSHPCAKESESLRSPVFQLIVIN  266 (356)
T ss_dssp             TSTTEEEEEETTSEEEEEETTT--CCEEEEEECCC---CCCEEEEEEETTE--EEEEEC------------CCEEEEEEE
T ss_pred             CCCceEEEecCCCcEEEEECCC--CcEEEEEcCCCcceeeeEEEEECCCCC--EEEEeccCCCcceeeccCCCcEEEEEE
Confidence            4467899999999999999974  56778888754   4677889999876  43            6789999999999


Q ss_pred             CCCCeEEEEe-----ccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEecCCcceE-EEEEcCCCCEEEEE
Q psy4650         109 YQNKTCVQTL-----EGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVW-TISSLKGSNNVAIG  182 (381)
Q Consensus       109 ~~~~~~~~~~-----~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~-~v~~~~~~~~l~~~  182 (381)
                      ..+++.+..+     .+|...+.+..+  ++..+++|+.|++|+|||+.+|+.+.++.+|...+. +++|+|+|++|++|
T Consensus       267 ~~tgk~l~v~~~~~p~Gh~~~~lsg~~--sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSG  344 (356)
T 2w18_A          267 PKTTLSVGVMLYCLPPGQAGRFLEGDV--KDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAG  344 (356)
T ss_dssp             TTTTEEEEEEEECCCTTCCCCEEEEEE--ETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEE
T ss_pred             CCCCEEEEEEEeeccCCCcceeEcccc--CCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEE
Confidence            9999887665     467666544444  488999999999999999999999999998877655 58999999999999


Q ss_pred             eCCCeEEEEe
Q psy4650         183 YDEGSVLLKV  192 (381)
Q Consensus       183 ~~dg~v~i~~  192 (381)
                      +.|++|++|+
T Consensus       345 S~D~TIklWd  354 (356)
T 2w18_A          345 QKDGNIFVYH  354 (356)
T ss_dssp             CTTSCEEEEE
T ss_pred             ECCCcEEEec
Confidence            9999999953

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.88  E-value=1.2e-21  Score=182.02  Aligned_cols=203  Identities=10%  Similarity=0.034  Sum_probs=155.9

Q ss_pred             ceeeeecCCCceEEEEEecCCeEEEecCCC---cc-ceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECC-
Q psy4650          36 KVDITTNKDMIEYKISYQESSRVKAFNPIQ---VA-TLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQ-  110 (381)
Q Consensus        36 ~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~---~~-~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~-  110 (381)
                      ..++.+.+..+.++++|+.||+|++|++..   .. ......+ +|.+.|.+++|+|++.  +|++|+.|++|++||+. 
T Consensus        66 V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~--~l~s~s~dg~i~vwd~~~  142 (437)
T 3gre_A           66 ITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFD--AFAVSSKDGQIIVLKVNH  142 (437)
T ss_dssp             EEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSS--EEEEEETTSEEEEEEEEE
T ss_pred             eEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCC--EEEEEeCCCEEEEEEecc
Confidence            456667772367999999999999999854   11 1112222 6999999999999776  89999999999999994 


Q ss_pred             --CCeEEEEecc------------CCCCEEEEE--EecCCCEEEEEeCCCCEEEEeCCCCeeeEEEec--CCcceEEEEE
Q psy4650         111 --NKTCVQTLEG------------HGQNISAVC--FHPELPIVITGSEDGSVRVWHSGTHRLEISLTY--GLERVWTISS  172 (381)
Q Consensus       111 --~~~~~~~~~~------------~~~~v~~~~--~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~--~~~~v~~v~~  172 (381)
                        ++.....+.+            +...+.++.  ++|++..+++|+.|+.|++||+++++.+..+..  |...|.+++|
T Consensus       143 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~  222 (437)
T 3gre_A          143 YQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICI  222 (437)
T ss_dssp             EEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEE
T ss_pred             ccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEE
Confidence              4443333322            445667776  557889999999999999999999999999988  7899999999


Q ss_pred             cCCCCEEEEEeCCCeEEEEecCCCceEEEecCCCEEEEEec--CceeecccccCCccccccCCceEEeeehHHHHHhccC
Q psy4650         173 LKGSNNVAIGYDEGSVLLKVGREEPAVSMDVNGCKIIWARH--SEVQQANLKTMPEVFENITAGVVLTLSVHVTIKYRLD  250 (381)
Q Consensus       173 ~~~~~~l~~~~~dg~v~i~~~~~~~~~~~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~dg~~l~~~~~d~~~~~~d  250 (381)
                      +|++.++++|+.||.+++          ||..++.++....  .......+.-.   -.+++++..+++++.++.+++||
T Consensus       223 s~~~~~l~s~~~dg~i~i----------wd~~~~~~~~~~~~~~~~~v~~~~~~---~~~s~~~~~l~s~~~dg~i~iwd  289 (437)
T 3gre_A          223 DEECCVLILGTTRGIIDI----------WDIRFNVLIRSWSFGDHAPITHVEVC---QFYGKNSVIVVGGSSKTFLTIWN  289 (437)
T ss_dssp             CTTSCEEEEEETTSCEEE----------EETTTTEEEEEEBCTTCEEEEEEEEC---TTTCTTEEEEEEESTTEEEEEEE
T ss_pred             CCCCCEEEEEcCCCeEEE----------EEcCCccEEEEEecCCCCceEEEEec---cccCCCccEEEEEcCCCcEEEEE
Confidence            999999999999999999          7777777665543  12111111111   15678999999999999999999


Q ss_pred             CCcC
Q psy4650         251 ISDS  254 (381)
Q Consensus       251 ~~~~  254 (381)
                      +...
T Consensus       290 ~~~~  293 (437)
T 3gre_A          290 FVKG  293 (437)
T ss_dssp             TTTT
T ss_pred             cCCC
Confidence            8643

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.88  E-value=8.5e-22  Score=181.51  Aligned_cols=202  Identities=12%  Similarity=0.075  Sum_probs=165.9

Q ss_pred             ceeeeecCCCceEEEEEecCCeEEEecCCCcc------c-eeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEE
Q psy4650          36 KVDITTNKDMIEYKISYQESSRVKAFNPIQVA------T-LILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWD  108 (381)
Q Consensus        36 ~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~------~-~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd  108 (381)
                      ...+.+.+++..++++++.|++|++||+....      . ..+..+.+|.+.|.+++|+|++. .++++++.|+.|++||
T Consensus       116 v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~l~~~~~dg~v~iwd  194 (416)
T 2pm9_A          116 VKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLA-HVFASAGSSNFASIWD  194 (416)
T ss_dssp             CCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCT-TEEEEESSSSCEEEEE
T ss_pred             eEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCC-cEEEEEcCCCCEEEEE
Confidence            35677777767799999999999999997543      1 12334578999999999999843 3899999999999999


Q ss_pred             CCCCeEEEEeccC------CCCEEEEEEecCC-CEEEEEeCCC---CEEEEeCCCC-eeeEEEe-cCCcceEEEEEcC-C
Q psy4650         109 YQNKTCVQTLEGH------GQNISAVCFHPEL-PIVITGSEDG---SVRVWHSGTH-RLEISLT-YGLERVWTISSLK-G  175 (381)
Q Consensus       109 ~~~~~~~~~~~~~------~~~v~~~~~~p~~-~~l~s~~~d~---~i~vwd~~~~-~~~~~~~-~~~~~v~~v~~~~-~  175 (381)
                      +.+++.+..+..|      ...|.+++|+|++ .++++++.|+   .|++||++++ .....+. +|...|.+++|+| +
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~  274 (416)
T 2pm9_A          195 LKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQD  274 (416)
T ss_dssp             TTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSC
T ss_pred             CCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCC
Confidence            9999998888776      7889999999997 5899999998   9999999986 5677777 8999999999999 8


Q ss_pred             CCEEEEEeCCCeEEEEecCCCceEEEecCCCEEEEEecCceeecccccCCccccccCCc-eEEeeehHHHHHhccCCCcC
Q psy4650         176 SNNVAIGYDEGSVLLKVGREEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAG-VVLTLSVHVTIKYRLDISDS  254 (381)
Q Consensus       176 ~~~l~~~~~dg~v~i~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg-~~l~~~~~d~~~~~~d~~~~  254 (381)
                      +.++++++.||.+++          ||..++.++.....+..  .    ...++|+|++ ..+++++.++..++|++...
T Consensus       275 ~~~l~s~~~dg~v~~----------wd~~~~~~~~~~~~~~~--~----v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~  338 (416)
T 2pm9_A          275 EHLLLSSGRDNTVLL----------WNPESAEQLSQFPARGN--W----CFKTKFAPEAPDLFACASFDNKIEVQTLQNL  338 (416)
T ss_dssp             SSCEEEEESSSEEEE----------ECSSSCCEEEEEECSSS--C----CCCEEECTTCTTEEEECCSSSEEEEEESCCC
T ss_pred             CCeEEEEeCCCCEEE----------eeCCCCccceeecCCCC--c----eEEEEECCCCCCEEEEEecCCcEEEEEccCC
Confidence            999999999999999          77777766655443211  1    1125788998 89999999999999998654

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.88  E-value=8e-21  Score=174.24  Aligned_cols=218  Identities=16%  Similarity=0.077  Sum_probs=165.8

Q ss_pred             cceeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCC-ccEEEEEcCCCeEEEEECCCCe
Q psy4650          35 TKVDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGD-KPYLISGADDRLVKIWDYQNKT  113 (381)
Q Consensus        35 ~~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~-~~~l~s~~~d~~v~vwd~~~~~  113 (381)
                      ....+.+.++...++++++.||.|++|++..  ......+ .|...+.++.|+|.+. ..++++++.|+.|++||+.++.
T Consensus       101 ~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~  177 (408)
T 4a11_B          101 SVETVQWYPHDTGMFTSSSFDKTLKVWDTNT--LQTADVF-NFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGS  177 (408)
T ss_dssp             CEEEEEECTTCTTCEEEEETTSEEEEEETTT--TEEEEEE-ECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSC
T ss_pred             cEEEEEEccCCCcEEEEEeCCCeEEEeeCCC--Cccceec-cCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcc
Confidence            3456777776677999999999999999974  3334444 3788899999998542 3489999999999999999999


Q ss_pred             EEEEeccCCCCEEEEEEecCCC-EEEEEeCCCCEEEEeCCCCe-eeEEE---------------ecCCcceEEEEEcCCC
Q psy4650         114 CVQTLEGHGQNISAVCFHPELP-IVITGSEDGSVRVWHSGTHR-LEISL---------------TYGLERVWTISSLKGS  176 (381)
Q Consensus       114 ~~~~~~~~~~~v~~~~~~p~~~-~l~s~~~d~~i~vwd~~~~~-~~~~~---------------~~~~~~v~~v~~~~~~  176 (381)
                      .+..+.+|...|.+++|+|++. .+++|+.|+.|++||++++. ....+               ..|...|.+++|+|++
T Consensus       178 ~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  257 (408)
T 4a11_B          178 CSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDG  257 (408)
T ss_dssp             CCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTS
T ss_pred             eeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCC
Confidence            9999999999999999999998 58999999999999998765 33333               4678899999999999


Q ss_pred             CEEEEEeCCCeEEEEecCCCc----------------------------eEEEecCCCEEEEEecCceeecccccCCc--
Q psy4650         177 NNVAIGYDEGSVLLKVGREEP----------------------------AVSMDVNGCKIIWARHSEVQQANLKTMPE--  226 (381)
Q Consensus       177 ~~l~~~~~dg~v~i~~~~~~~----------------------------~~~~d~~~~~~~~~~~~~~~~~~~~~~~~--  226 (381)
                      .++++++.||.+++|+.....                            +.....++...+|+.........+.++..  
T Consensus       258 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v  337 (408)
T 4a11_B          258 LHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTV  337 (408)
T ss_dssp             SEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCE
T ss_pred             CEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeE
Confidence            999999999999999844311                            11111222334444433333333332221  


Q ss_pred             -cccccCCceEEeeehHHHHHhccCCCcCh
Q psy4650         227 -VFENITAGVVLTLSVHVTIKYRLDISDSH  255 (381)
Q Consensus       227 -~~~~~~dg~~l~~~~~d~~~~~~d~~~~~  255 (381)
                       .++|+|+|..+++++.++..++|++....
T Consensus       338 ~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~  367 (408)
T 4a11_B          338 DCCVFQSNFQELYSGSRDCNILAWVPSLYE  367 (408)
T ss_dssp             EEEEEETTTTEEEEEETTSCEEEEEECC--
T ss_pred             EEEEEcCCCCEEEEECCCCeEEEEeCCCCC
Confidence             26789999999999999999999987643

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.88  E-value=1.3e-21  Score=182.64  Aligned_cols=203  Identities=11%  Similarity=0.008  Sum_probs=160.9

Q ss_pred             ceeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeec--cccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCe
Q psy4650          36 KVDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLY--GHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKT  113 (381)
Q Consensus        36 ~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~--~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~  113 (381)
                      ...+.+.+++..++++++.||+|++|++.......+..+.  +|...|.+++|+|++.  +|++|+.|+.+++|++.++.
T Consensus       105 v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~--~l~~~~~~g~v~~~~~~~~~  182 (450)
T 2vdu_B          105 IRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDT--TVIIADKFGDVYSIDINSIP  182 (450)
T ss_dssp             EEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSS--EEEEEETTSEEEEEETTSCC
T ss_pred             eEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCC--EEEEEeCCCcEEEEecCCcc
Confidence            4567778875555689999999999998721234455555  6778999999999876  89999999999999998876


Q ss_pred             EEE----EeccCCCCEEEEEEecC---CCEEEEEeCCCCEEEEeCCCCeeeEE-EecCCcceEEEEEcCCCCEEEEEeCC
Q psy4650         114 CVQ----TLEGHGQNISAVCFHPE---LPIVITGSEDGSVRVWHSGTHRLEIS-LTYGLERVWTISSLKGSNNVAIGYDE  185 (381)
Q Consensus       114 ~~~----~~~~~~~~v~~~~~~p~---~~~l~s~~~d~~i~vwd~~~~~~~~~-~~~~~~~v~~v~~~~~~~~l~~~~~d  185 (381)
                      ...    .+.+|...|.+++|+|+   +.++++|+.|+.|++||+.++..+.. +.+|...|.+++|+ ++.++++++.|
T Consensus       183 ~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d  261 (450)
T 2vdu_B          183 EEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLLSAGGD  261 (450)
T ss_dssp             CSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEEEEEESS
T ss_pred             cccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEEEEEeCC
Confidence            443    77889999999999999   88999999999999999999988877 55799999999999 99999999999


Q ss_pred             CeEEEEecCCCceEEEecCCCEEEEEecCceeeccc-------------------ccCCccccccCCceEEeeeh-HHHH
Q psy4650         186 GSVLLKVGREEPAVSMDVNGCKIIWARHSEVQQANL-------------------KTMPEVFENITAGVVLTLSV-HVTI  245 (381)
Q Consensus       186 g~v~i~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~dg~~l~~~~-~d~~  245 (381)
                      +.+++          ||..++.++...........+                   ......+.++|++.+++++. .++.
T Consensus       262 ~~v~v----------wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~  331 (450)
T 2vdu_B          262 DKIFA----------WDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKC  331 (450)
T ss_dssp             SEEEE----------EETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSE
T ss_pred             CeEEE----------EECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCe
Confidence            99999          777666655544322100000                   00011257789999999888 7888


Q ss_pred             HhccCC
Q psy4650         246 KYRLDI  251 (381)
Q Consensus       246 ~~~~d~  251 (381)
                      +++|++
T Consensus       332 i~iw~~  337 (450)
T 2vdu_B          332 IIILEM  337 (450)
T ss_dssp             EEEEEE
T ss_pred             EEEEEe
Confidence            889998

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.88  E-value=3e-21  Score=179.19  Aligned_cols=201  Identities=15%  Similarity=0.203  Sum_probs=159.1

Q ss_pred             ceeeeecCCCceEEEEEecCCeEEEecCCCccc-----eeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECC
Q psy4650          36 KVDITTNKDMIEYKISYQESSRVKAFNPIQVAT-----LILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQ  110 (381)
Q Consensus        36 ~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~-----~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~  110 (381)
                      .+.+...+++..++++++.||+|++|++.....     .....+.+|...|.+++|+|++. .+|++++.|+.|++||+.
T Consensus       184 v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~-~~l~s~~~dg~i~i~d~~  262 (430)
T 2xyi_A          184 GYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHE-SLFGSVADDQKLMIWDTR  262 (430)
T ss_dssp             CCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCT-TEEEEEETTSEEEEEETT
T ss_pred             eEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCC-CEEEEEeCCCeEEEEECC
Confidence            356777777666999999999999999965211     12456779999999999999544 389999999999999999


Q ss_pred             CC---eEEEEeccCCCCEEEEEEecCCC-EEEEEeCCCCEEEEeCCC-CeeeEEEecCCcceEEEEEcCCCC-EEEEEeC
Q psy4650         111 NK---TCVQTLEGHGQNISAVCFHPELP-IVITGSEDGSVRVWHSGT-HRLEISLTYGLERVWTISSLKGSN-NVAIGYD  184 (381)
Q Consensus       111 ~~---~~~~~~~~~~~~v~~~~~~p~~~-~l~s~~~d~~i~vwd~~~-~~~~~~~~~~~~~v~~v~~~~~~~-~l~~~~~  184 (381)
                      ++   .....+..|...|.+++|+|++. .+++|+.||.|++||+++ +..+..+..|...|.+++|+|++. ++++++.
T Consensus       263 ~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~  342 (430)
T 2xyi_A          263 NNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGT  342 (430)
T ss_dssp             CSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEET
T ss_pred             CCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeC
Confidence            87   56777889999999999999987 789999999999999997 567888889999999999999985 7999999


Q ss_pred             CCeEEEEecCCCceEEEecCC--------------CEEEEEecCceeecccccCCccccccCCce-EEeeehHHHHHhcc
Q psy4650         185 EGSVLLKVGREEPAVSMDVNG--------------CKIIWARHSEVQQANLKTMPEVFENITAGV-VLTLSVHVTIKYRL  249 (381)
Q Consensus       185 dg~v~i~~~~~~~~~~~d~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~-~l~~~~~d~~~~~~  249 (381)
                      ||.+++|          |...              ..++.....+      ......+.|+|++. .+++++.++...+|
T Consensus       343 d~~i~iw----------d~~~~~~~~~~~~~~~~~~~~~~~~~~h------~~~v~~~~~~p~~~~~l~s~s~dg~i~iw  406 (430)
T 2xyi_A          343 DRRLHVW----------DLSKIGEEQSTEDAEDGPPELLFIHGGH------TAKISDFSWNPNEPWIICSVSEDNIMQVW  406 (430)
T ss_dssp             TSCCEEE----------EGGGTTCCCCHHHHHHCCTTEEEECCCC------SSCEEEEEECSSSTTEEEEEETTSEEEEE
T ss_pred             CCcEEEE----------eCCCCccccCccccccCCcceEEEcCCC------CCCceEEEECCCCCCEEEEEECCCCEEEe
Confidence            9999995          4432              1122211111      01111267889998 88899999989999


Q ss_pred             CCCc
Q psy4650         250 DISD  253 (381)
Q Consensus       250 d~~~  253 (381)
                      ++..
T Consensus       407 ~~~~  410 (430)
T 2xyi_A          407 QMAE  410 (430)
T ss_dssp             EECH
T ss_pred             Eccc
Confidence            8753

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.88  E-value=9.6e-22  Score=183.01  Aligned_cols=204  Identities=12%  Similarity=0.048  Sum_probs=153.8

Q ss_pred             ceeeeecCCCc-eEEEEEecCCeEEEecCCCccce-------------------------------------ee-Eeecc
Q psy4650          36 KVDITTNKDMI-EYKISYQESSRVKAFNPIQVATL-------------------------------------IL-KTLYG   76 (381)
Q Consensus        36 ~~~i~~~~~~~-~~~~s~~~d~~v~i~~~~~~~~~-------------------------------------~~-~~l~~   76 (381)
                      ...+.+.+++. .++++++.|++|++|++......                                     .. ..+.+
T Consensus        96 V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (447)
T 3dw8_B           96 INKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANA  175 (447)
T ss_dssp             CCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSC
T ss_pred             eEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccC
Confidence            44567777643 68999999999999998542110                                     01 12468


Q ss_pred             ccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCC-CeEEE-------EeccCCCCEEEEEEecCC-CEEEEEeCCCCEE
Q psy4650          77 HEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQN-KTCVQ-------TLEGHGQNISAVCFHPEL-PIVITGSEDGSVR  147 (381)
Q Consensus        77 h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~-~~~~~-------~~~~~~~~v~~~~~~p~~-~~l~s~~~d~~i~  147 (381)
                      |...|.+++|+|++.  +|++| .|+.|++||+.+ +....       .+.+|...|.+++|+|++ ..+++|+.|+.|+
T Consensus       176 h~~~v~~~~~~~~~~--~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~  252 (447)
T 3dw8_B          176 HTYHINSISINSDYE--TYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIR  252 (447)
T ss_dssp             CSSCCCEEEECTTSS--EEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEE
T ss_pred             CCcceEEEEEcCCCC--EEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEE
Confidence            999999999999876  78998 799999999984 34444       356899999999999998 8999999999999


Q ss_pred             EEeCCCCee----eEEEecCCc------------ceEEEEEcCCCCEEEEEeCCCeEEEEecCCCceEEEecCC-CEEEE
Q psy4650         148 VWHSGTHRL----EISLTYGLE------------RVWTISSLKGSNNVAIGYDEGSVLLKVGREEPAVSMDVNG-CKIIW  210 (381)
Q Consensus       148 vwd~~~~~~----~~~~~~~~~------------~v~~v~~~~~~~~l~~~~~dg~v~i~~~~~~~~~~~d~~~-~~~~~  210 (381)
                      +||++++..    ...+..+..            .|.+++|+|+|.++++++. |.+++          ||... +.++.
T Consensus       253 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~i----------wd~~~~~~~~~  321 (447)
T 3dw8_B          253 LCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKV----------WDLNMENRPVE  321 (447)
T ss_dssp             EEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEE----------EETTCCSSCSC
T ss_pred             EEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEE----------EeCCCCccccc
Confidence            999999887    678887776            8999999999999999999 99999          55543 33322


Q ss_pred             EecCceeecc----------cccCCccccccCCceEEeeehHHHHHhccCCCcC
Q psy4650         211 ARHSEVQQAN----------LKTMPEVFENITAGVVLTLSVHVTIKYRLDISDS  254 (381)
Q Consensus       211 ~~~~~~~~~~----------~~~~~~~~~~~~dg~~l~~~~~d~~~~~~d~~~~  254 (381)
                      ....+.....          +.. ...++|+|+|..+++++.++..++|++...
T Consensus       322 ~~~~~~~~~~~l~~~~~~~~i~~-~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~  374 (447)
T 3dw8_B          322 TYQVHEYLRSKLCSLYENDCIFD-KFECCWNGSDSVVMTGSYNNFFRMFDRNTK  374 (447)
T ss_dssp             CEESCGGGTTTHHHHHHTSGGGC-CCCEEECTTSSEEEEECSTTEEEEEETTTC
T ss_pred             eeecccccccccccccccccccc-ceEEEECCCCCEEEEeccCCEEEEEEcCCC
Confidence            2221110000          000 001578999999999999999999998654

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.88  E-value=1.1e-21  Score=194.48  Aligned_cols=205  Identities=15%  Similarity=0.143  Sum_probs=159.9

Q ss_pred             eeeeecCC-CceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCC--e
Q psy4650          37 VDITTNKD-MIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNK--T  113 (381)
Q Consensus        37 ~~i~~~~~-~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~--~  113 (381)
                      ..+.+.++ .+.++++|+.||+|++|++..........+.+|...|.+++|+|++....+++|+.||+|++||+.++  .
T Consensus        57 ~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~  136 (753)
T 3jro_A           57 WRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTT  136 (753)
T ss_dssp             EEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCC
T ss_pred             EEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCc
Confidence            45556544 26799999999999999997644446778889999999999999821238999999999999999887  3


Q ss_pred             EEEEeccCCCCEEEEEEec-------------CCCEEEEEeCCCCEEEEeCCCC----eeeEEEecCCcceEEEEEcCC-
Q psy4650         114 CVQTLEGHGQNISAVCFHP-------------ELPIVITGSEDGSVRVWHSGTH----RLEISLTYGLERVWTISSLKG-  175 (381)
Q Consensus       114 ~~~~~~~~~~~v~~~~~~p-------------~~~~l~s~~~d~~i~vwd~~~~----~~~~~~~~~~~~v~~v~~~~~-  175 (381)
                      ....+.+|...|.+++|+|             ++..+++|+.||.|++||++++    .....+.+|...|.+++|+|+ 
T Consensus       137 ~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~  216 (753)
T 3jro_A          137 SPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTV  216 (753)
T ss_dssp             CCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCC
T ss_pred             ceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCC
Confidence            4556778999999999999             4889999999999999999877    566778889999999999999 


Q ss_pred             --CCEEEEEeCCCeEEEEecCCCceEEEecCCCEEEEEecCceeecccccCCccccccCCceEEeeehHHHHHhccCCC
Q psy4650         176 --SNNVAIGYDEGSVLLKVGREEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSVHVTIKYRLDIS  252 (381)
Q Consensus       176 --~~~l~~~~~dg~v~i~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~d~~~~~~d~~  252 (381)
                        +.++++|+.||.+++          ||..++...+....... ....+....++|+|+|..+++++.++..+.|++.
T Consensus       217 ~~~~~l~s~s~Dg~I~i----------wd~~~~~~~~~~~~~~~-~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~  284 (753)
T 3jro_A          217 LLRSYLASVSQDRTCII----------WTQDNEQGPWKKTLLKE-EKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN  284 (753)
T ss_dssp             SSSEEEEEEESSSCEEE----------EEESSSSSCCBCCBSSS-SCCSSCCCCEEECTTTCCEEEECSSSCEECCBCC
T ss_pred             CCCCEEEEEecCCEEEE----------ecCCCCCCcceeEEecc-CCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecC
Confidence              899999999999999          55544321110000000 0011111125788999999999999999999876

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.88  E-value=1.3e-20  Score=176.56  Aligned_cols=194  Identities=15%  Similarity=0.248  Sum_probs=161.0

Q ss_pred             eeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCe---
Q psy4650          37 VDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKT---  113 (381)
Q Consensus        37 ~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~---  113 (381)
                      ..+...+++  ++++|+.||+|++||+..  ...+..+.+|.+.|.+++|++..+..++++|+.|++|++||+.++.   
T Consensus       166 ~~l~~~~~~--~l~s~s~dg~i~vwd~~~--~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~  241 (464)
T 3v7d_B          166 WALKYAHGG--ILVSGSTDRTVRVWDIKK--GCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVP  241 (464)
T ss_dssp             EEEEECSTT--EEEEEETTSCEEEEETTT--TEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC-
T ss_pred             EEEEEcCCC--EEEEEeCCCCEEEEECCC--CcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccc
Confidence            445555543  899999999999999974  4567889999999999999975555589999999999999998764   


Q ss_pred             --------------------EEEEeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEecCCcceEEEEEc
Q psy4650         114 --------------------CVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSL  173 (381)
Q Consensus       114 --------------------~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~  173 (381)
                                          ....+.+|...|.++  ++++..+++|+.|+.|++||+.+++.+..+.+|...|.+++|+
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~  319 (464)
T 3v7d_B          242 DHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYD  319 (464)
T ss_dssp             -----CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE
T ss_pred             cccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEc
Confidence                                255678898888887  6778999999999999999999999999999999999999999


Q ss_pred             CCCCEEEEEeCCCeEEEEecCCCceEEEecCCCEEEEEecCceeecccccCCccccccCCceEEeeehHHHHHhccCCCc
Q psy4650         174 KGSNNVAIGYDEGSVLLKVGREEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSVHVTIKYRLDISD  253 (381)
Q Consensus       174 ~~~~~l~~~~~dg~v~i~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~d~~~~~~d~~~  253 (381)
                      |++..+++|+.||.+++          ||..++.++.....+..  .+..    +.+  ++..+++++.++....|++..
T Consensus       320 ~~~~~l~sg~~dg~i~v----------wd~~~~~~~~~~~~h~~--~v~~----~~~--~~~~l~s~s~dg~v~vwd~~~  381 (464)
T 3v7d_B          320 HERKRCISASMDTTIRI----------WDLENGELMYTLQGHTA--LVGL----LRL--SDKFLVSAAADGSIRGWDAND  381 (464)
T ss_dssp             TTTTEEEEEETTSCEEE----------EETTTTEEEEEECCCSS--CEEE----EEE--CSSEEEEEETTSEEEEEETTT
T ss_pred             CCCCEEEEEeCCCcEEE----------EECCCCcEEEEEeCCCC--cEEE----EEE--cCCEEEEEeCCCcEEEEECCC
Confidence            99999999999999999          88888887776643321  1111    223  367899999999999999875


Q ss_pred             C
Q psy4650         254 S  254 (381)
Q Consensus       254 ~  254 (381)
                      .
T Consensus       382 ~  382 (464)
T 3v7d_B          382 Y  382 (464)
T ss_dssp             C
T ss_pred             C
Confidence            3

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.88  E-value=3.8e-20  Score=164.01  Aligned_cols=148  Identities=15%  Similarity=0.222  Sum_probs=123.1

Q ss_pred             eeecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEEEe
Q psy4650          39 ITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTL  118 (381)
Q Consensus        39 i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~  118 (381)
                      +..+++  .+|++ +.|++|++||+.+........+.+|...|.+++|+|++.  ++++|+.|++|++||+.+++.+..+
T Consensus        31 l~WS~~--~~lAv-g~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~--~l~sgs~Dg~v~iw~~~~~~~~~~~  105 (318)
T 4ggc_A           31 VDWSSG--NVLAV-ALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGN--YLAVGTSSAEVQLWDVQQQKRLRNM  105 (318)
T ss_dssp             EEECTT--SEEEE-EETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSS--EEEEEETTSEEEEEETTTTEEEEEE
T ss_pred             EEECCC--CEEEE-EeCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCC--EEEEEECCCcEEEeecCCceeEEEe
Confidence            334444  25554 568999999997543333334567889999999999877  8999999999999999999999999


Q ss_pred             ccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCC-eeeEEEecCCcceEEEEEcCCCCEEEEEeCCCeEEEEec
Q psy4650         119 EGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTH-RLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKVG  193 (381)
Q Consensus       119 ~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~-~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~~  193 (381)
                      .+|...+.++++  ++..+++++.++.+++|+...+ .....+.+|...+..+.+.+++.++++++.||.+++|+.
T Consensus       106 ~~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~  179 (318)
T 4ggc_A          106 TSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPS  179 (318)
T ss_dssp             ECCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEES
T ss_pred             cCccceEEEeec--CCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEEC
Confidence            999988777655  5679999999999999999876 455677889999999999999999999999999999863

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.88  E-value=2e-21  Score=175.11  Aligned_cols=202  Identities=18%  Similarity=0.251  Sum_probs=159.3

Q ss_pred             cceeeeecCCCceEEEEEec---CCeEEEecCCCccceeeEeeccccccEEEEEeeeCC-CccEEEEEcCCCeEEEEECC
Q psy4650          35 TKVDITTNKDMIEYKISYQE---SSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGG-DKPYLISGADDRLVKIWDYQ  110 (381)
Q Consensus        35 ~~~~i~~~~~~~~~~~s~~~---d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~-~~~~l~s~~~d~~v~vwd~~  110 (381)
                      ....+.+.+++..++++++.   |+.|++|++....... ....+|...|.+++|+|++ +..++++|+.|+.|++||+.
T Consensus        20 ~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~   98 (357)
T 3i2n_A           20 TVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKL-LREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLE   98 (357)
T ss_dssp             CEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEE-EEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTT
T ss_pred             ceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccc-eeeecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCC
Confidence            44677788887778888877   9999999997533222 2334899999999999973 02379999999999999999


Q ss_pred             CCe-EEEEeccCCCCEEEEEE------ecCCCEEEEEeCCCCEEEEeCCCCe-eeEEEecCCc----ceEEEE----EcC
Q psy4650         111 NKT-CVQTLEGHGQNISAVCF------HPELPIVITGSEDGSVRVWHSGTHR-LEISLTYGLE----RVWTIS----SLK  174 (381)
Q Consensus       111 ~~~-~~~~~~~~~~~v~~~~~------~p~~~~l~s~~~d~~i~vwd~~~~~-~~~~~~~~~~----~v~~v~----~~~  174 (381)
                      ++. .+..+.+|...|.++.|      +|++..+++++.|+.|++||+.++. ....+..+..    .+.+++    |+|
T Consensus        99 ~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  178 (357)
T 3i2n_A           99 APEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQ  178 (357)
T ss_dssp             SCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-
T ss_pred             CCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCC
Confidence            987 88899999999999965      6789999999999999999999887 6777765544    788888    788


Q ss_pred             CCCEEEEEeCCCeEEEEecCCCceEEEecCCCEEEEEecCceeecccccCCccccccC---CceEEeeehHHHHHhccCC
Q psy4650         175 GSNNVAIGYDEGSVLLKVGREEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENIT---AGVVLTLSVHVTIKYRLDI  251 (381)
Q Consensus       175 ~~~~l~~~~~dg~v~i~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---dg~~l~~~~~d~~~~~~d~  251 (381)
                      ++.++++++.||.+++          ||..++...+.......   +    ..+.|+|   ++..+++++.++..+.|++
T Consensus       179 ~~~~l~~~~~d~~i~i----------~d~~~~~~~~~~~~~~~---v----~~~~~~~~~~~~~~l~~~~~dg~i~i~d~  241 (357)
T 3i2n_A          179 EERVVCAGYDNGDIKL----------FDLRNMALRWETNIKNG---V----CSLEFDRKDISMNKLVATSLEGKFHVFDM  241 (357)
T ss_dssp             CCCEEEEEETTSEEEE----------EETTTTEEEEEEECSSC---E----EEEEESCSSSSCCEEEEEESTTEEEEEEE
T ss_pred             CCCEEEEEccCCeEEE----------EECccCceeeecCCCCc---e----EEEEcCCCCCCCCEEEEECCCCeEEEEeC
Confidence            9999999999999999          78877776554322211   1    1156778   8999999999999999988


Q ss_pred             CcC
Q psy4650         252 SDS  254 (381)
Q Consensus       252 ~~~  254 (381)
                      ...
T Consensus       242 ~~~  244 (357)
T 3i2n_A          242 RTQ  244 (357)
T ss_dssp             EEE
T ss_pred             cCC
Confidence            653

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.88  E-value=6.6e-21  Score=170.60  Aligned_cols=185  Identities=16%  Similarity=0.186  Sum_probs=147.2

Q ss_pred             eeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCC-----eEEEEeccCCCCEEEEEEecCCCEEEEEeCC
Q psy4650          69 LILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNK-----TCVQTLEGHGQNISAVCFHPELPIVITGSED  143 (381)
Q Consensus        69 ~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~-----~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d  143 (381)
                      .+..+|+||.+.|++++|+|++. .+|+|||.|++|++||+.+.     .+...+.+|...|.+++|+|++.++++++.|
T Consensus        29 ~l~~tL~GH~~~V~~v~~sp~~~-~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d  107 (340)
T 4aow_A           29 TLRGTLKGHNGWVTQIATTPQFP-DMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWD  107 (340)
T ss_dssp             EEEEEECCCSSCEEEEEECTTCT-TEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             EEEEEECCccCCEEEEEEeCCCC-CEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEccc
Confidence            44568999999999999999743 38999999999999998764     3567889999999999999999999999999


Q ss_pred             CCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCC--------------------------c
Q psy4650         144 GSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKVGREE--------------------------P  197 (381)
Q Consensus       144 ~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~~~~~--------------------------~  197 (381)
                      +.|++|+...+........+...+....+++++..+++++.|+.+++|+....                          .
T Consensus       108 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  187 (340)
T 4aow_A          108 GTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPI  187 (340)
T ss_dssp             SEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCE
T ss_pred             ccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcE
Confidence            99999999999998888888889999999999999999999999999863211                          0


Q ss_pred             eEEEecCCCEEEEEecCceeecccccCCc---cccccCCceEEeeehHHHHHhccCCCcC
Q psy4650         198 AVSMDVNGCKIIWARHSEVQQANLKTMPE---VFENITAGVVLTLSVHVTIKYRLDISDS  254 (381)
Q Consensus       198 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~dg~~l~~~~~d~~~~~~d~~~~  254 (381)
                      +++-..+....+|+.........+.++..   .++|+|+|..+++++.|+....||+...
T Consensus       188 ~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~  247 (340)
T 4aow_A          188 IVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEG  247 (340)
T ss_dssp             EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTT
T ss_pred             EEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccC
Confidence            11112223344555544444333333322   1578999999999999999999998653

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.88  E-value=5.6e-21  Score=178.93  Aligned_cols=186  Identities=23%  Similarity=0.375  Sum_probs=156.8

Q ss_pred             ceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEEEeccCCCCE
Q psy4650          46 IEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNI  125 (381)
Q Consensus        46 ~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v  125 (381)
                      +.++++|+.||+|++||...  ...+..+.+|.+.|.+++|+|++   .+++|+.||+|++||+.++..+..+.+|.+.|
T Consensus       132 ~~~l~sgs~dg~i~vwd~~~--~~~~~~~~~h~~~V~~l~~~~~~---~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v  206 (464)
T 3v7d_B          132 DNYVITGADDKMIRVYDSIN--KKFLLQLSGHDGGVWALKYAHGG---ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTV  206 (464)
T ss_dssp             TTEEEEEETTSCEEEEETTT--TEEEEEECCCSSCEEEEEECSTT---EEEEEETTSCEEEEETTTTEEEEEECCCSSCE
T ss_pred             CCEEEEEcCCCcEEEEECCC--CcEEEEEeCCCcCEEEEEEcCCC---EEEEEeCCCCEEEEECCCCcEEEEECCCCCcc
Confidence            35899999999999999874  56778899999999999998865   79999999999999999999999999999999


Q ss_pred             EEEEEec--CCCEEEEEeCCCCEEEEeCCCCee-----------------------eEEEecCCcceEEEEEcCCCCEEE
Q psy4650         126 SAVCFHP--ELPIVITGSEDGSVRVWHSGTHRL-----------------------EISLTYGLERVWTISSLKGSNNVA  180 (381)
Q Consensus       126 ~~~~~~p--~~~~l~s~~~d~~i~vwd~~~~~~-----------------------~~~~~~~~~~v~~v~~~~~~~~l~  180 (381)
                      .+++|+|  ++..+++|+.|+.|++||+.++..                       ...+.+|...+.++  ++++.+++
T Consensus       207 ~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~  284 (464)
T 3v7d_B          207 RCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVV  284 (464)
T ss_dssp             EEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEE
T ss_pred             EEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEE
Confidence            9999995  678999999999999999987653                       44566788888777  56789999


Q ss_pred             EEeCCCeEEEEecCCCceEEEecCCCEEEEEecCceeecccccCCccccccCCceEEeeehHHHHHhccCCCcC
Q psy4650         181 IGYDEGSVLLKVGREEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSVHVTIKYRLDISDS  254 (381)
Q Consensus       181 ~~~~dg~v~i~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~d~~~~~~d~~~~  254 (381)
                      +|+.||.+++          ||..++..+.....+..  .+    ..+.++|++..+++++.++..+.|++...
T Consensus       285 ~~~~d~~i~v----------wd~~~~~~~~~~~~~~~--~v----~~~~~~~~~~~l~sg~~dg~i~vwd~~~~  342 (464)
T 3v7d_B          285 SGSYDNTLIV----------WDVAQMKCLYILSGHTD--RI----YSTIYDHERKRCISASMDTTIRIWDLENG  342 (464)
T ss_dssp             EEETTSCEEE----------EETTTTEEEEEECCCSS--CE----EEEEEETTTTEEEEEETTSCEEEEETTTT
T ss_pred             EEeCCCeEEE----------EECCCCcEEEEecCCCC--CE----EEEEEcCCCCEEEEEeCCCcEEEEECCCC
Confidence            9999999999          88888877766543211  11    11567899999999999999999998643

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.88  E-value=1.5e-21  Score=178.79  Aligned_cols=198  Identities=10%  Similarity=0.143  Sum_probs=160.1

Q ss_pred             eeeeecCCCceEEEEEecCCeEEEecCCCcc----ceeeEeeccccccEEEEEeeeC----C---CccEEEEEcCCCeEE
Q psy4650          37 VDITTNKDMIEYKISYQESSRVKAFNPIQVA----TLILKTLYGHEKGVNCVDYYHG----G---DKPYLISGADDRLVK  105 (381)
Q Consensus        37 ~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~----~~~~~~l~~h~~~v~~~~~~~~----~---~~~~l~s~~~d~~v~  105 (381)
                      ..+.+.+   .++++++.||+|++|++....    ...+..+.+|...|.+++|+|+    +   .  +|++++.|+.|+
T Consensus        20 ~~~~~~~---~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~--~l~s~~~dg~i~   94 (397)
T 1sq9_A           20 FSVSACN---SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELC--LVATTSFSGDLL   94 (397)
T ss_dssp             EEEEECS---SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEE--EEEEEETTSCEE
T ss_pred             EEEEecC---CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCcccc--EEEEEcCCCCEE
Confidence            4555655   699999999999999997533    2357788899999999999998    6   5  899999999999


Q ss_pred             EEECCCCeE-----EEEeccC-----CCCEEEEEEe----cCCCE-EEEEeCCCCEEEEeCCC------CeeeE-----E
Q psy4650         106 IWDYQNKTC-----VQTLEGH-----GQNISAVCFH----PELPI-VITGSEDGSVRVWHSGT------HRLEI-----S  159 (381)
Q Consensus       106 vwd~~~~~~-----~~~~~~~-----~~~v~~~~~~----p~~~~-l~s~~~d~~i~vwd~~~------~~~~~-----~  159 (381)
                      +||+.++..     ...+.+|     ...|.+++|+    |++.. +++++.|+.|++||+.+      +..+.     .
T Consensus        95 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  174 (397)
T 1sq9_A           95 FYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLE  174 (397)
T ss_dssp             EEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEE
T ss_pred             EEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcce
Confidence            999998876     8888888     5899999999    99999 99999999999999998      66665     6


Q ss_pred             Ee-------cCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCceEEEecCCCEEEEEecC---ce-eecccccCCccc
Q psy4650         160 LT-------YGLERVWTISSLKGSNNVAIGYDEGSVLLKVGREEPAVSMDVNGCKIIWARHS---EV-QQANLKTMPEVF  228 (381)
Q Consensus       160 ~~-------~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~~~~~~~~~~d~~~~~~~~~~~~---~~-~~~~~~~~~~~~  228 (381)
                      +.       .|...+.+++|+|++ .+++++.||.+++          ||..++.++.....   +. ....+    ..+
T Consensus       175 ~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i----------~d~~~~~~~~~~~~~~~h~~~~~~i----~~i  239 (397)
T 1sq9_A          175 LQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQI----------SELSTLRPLYNFESQHSMINNSNSI----RSV  239 (397)
T ss_dssp             EEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEE----------EETTTTEEEEEEECCC---CCCCCE----EEE
T ss_pred             eeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEE----------EECCCCceeEEEeccccccccCCcc----ceE
Confidence            64       378899999999999 9999999999999          77777777766543   10 01111    125


Q ss_pred             cccCCceEEeeehHH---HHHhccCCCcC
Q psy4650         229 ENITAGVVLTLSVHV---TIKYRLDISDS  254 (381)
Q Consensus       229 ~~~~dg~~l~~~~~d---~~~~~~d~~~~  254 (381)
                      .|+|++..++++..+   +..+.||+...
T Consensus       240 ~~~~~~~~l~~~~~d~~~g~i~i~d~~~~  268 (397)
T 1sq9_A          240 KFSPQGSLLAIAHDSNSFGCITLYETEFG  268 (397)
T ss_dssp             EECSSTTEEEEEEEETTEEEEEEEETTTC
T ss_pred             EECCCCCEEEEEecCCCCceEEEEECCCC
Confidence            678999999999998   88999998643

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.87  E-value=8.6e-21  Score=172.17  Aligned_cols=153  Identities=10%  Similarity=0.079  Sum_probs=127.0

Q ss_pred             ceeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCC----eEEEEECCC
Q psy4650          36 KVDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDR----LVKIWDYQN  111 (381)
Q Consensus        36 ~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~----~v~vwd~~~  111 (381)
                      .+++.+.++ +.++++++.++ +.+|+.............+|...|.+++|+|++.  ++++++.|+    .++.|+...
T Consensus       179 V~~v~fspd-g~~l~s~s~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~--~l~~~s~d~~~~~~i~~~~~~~  254 (365)
T 4h5i_A          179 VKDLHFSTD-GKVVAYITGSS-LEVISTVTGSCIARKTDFDKNWSLSKINFIADDT--VLIAASLKKGKGIVLTKISIKS  254 (365)
T ss_dssp             CCEEEECTT-SSEEEEECSSC-EEEEETTTCCEEEEECCCCTTEEEEEEEEEETTE--EEEEEEESSSCCEEEEEEEEET
T ss_pred             eEEEEEccC-CceEEecccee-EEEEEeccCcceeeeecCCCCCCEEEEEEcCCCC--EEEEEecCCcceeEEeeccccc
Confidence            456777877 55888888665 5555544433334455678999999999999887  788888877    688899877


Q ss_pred             CeE----EEEeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEE-ecCCcceEEEEEcCCCCEEEEEeCCC
Q psy4650         112 KTC----VQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISL-TYGLERVWTISSLKGSNNVAIGYDEG  186 (381)
Q Consensus       112 ~~~----~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~-~~~~~~v~~v~~~~~~~~l~~~~~dg  186 (381)
                      ...    ...+.+|..+|.+++|+|+|++||+|+.|++|+|||+.+++++..+ .+|...|++++|+|+|++|++|+.|+
T Consensus       255 ~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~  334 (365)
T 4h5i_A          255 GNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAAN  334 (365)
T ss_dssp             TEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTS
T ss_pred             ceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCC
Confidence            643    4567889999999999999999999999999999999999999886 68999999999999999999999999


Q ss_pred             eEEEEe
Q psy4650         187 SVLLKV  192 (381)
Q Consensus       187 ~v~i~~  192 (381)
                      +|+||.
T Consensus       335 tvrvw~  340 (365)
T 4h5i_A          335 TIHIIK  340 (365)
T ss_dssp             EEEEEE
T ss_pred             eEEEEE
Confidence            999944

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.87  E-value=1.8e-21  Score=179.52  Aligned_cols=195  Identities=17%  Similarity=0.220  Sum_probs=160.9

Q ss_pred             eeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEE
Q psy4650          37 VDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQ  116 (381)
Q Consensus        37 ~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~  116 (381)
                      ..+...++  ..+++++.+|.+++|++..  ...+..+.+|...|.+++|+|++.  +|++++.|+.|++||+.+++...
T Consensus       210 ~~~~~~~~--~~~~~~~~~g~i~~~d~~~--~~~~~~~~~~~~~i~~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~~~~  283 (425)
T 1r5m_A          210 VDVEWVDD--DKFVIPGPKGAIFVYQITE--KTPTGKLIGHHGPISVLEFNDTNK--LLLSASDDGTLRIWHGGNGNSQN  283 (425)
T ss_dssp             SCCEEEET--TEEEEECGGGCEEEEETTC--SSCSEEECCCSSCEEEEEEETTTT--EEEEEETTSCEEEECSSSBSCSE
T ss_pred             eEEEEcCC--CEEEEEcCCCeEEEEEcCC--CceeeeeccCCCceEEEEECCCCC--EEEEEcCCCEEEEEECCCCccce
Confidence            34444443  3588899999999999974  355677889999999999999876  89999999999999999999889


Q ss_pred             EeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCC
Q psy4650         117 TLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKVGREE  196 (381)
Q Consensus       117 ~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~~~~~  196 (381)
                      .+.+|...|.+++|+|++ .+++++.|+.|++||+.+++.+..+..|...+.+++|+|++.++++++.||.+++|+    
T Consensus       284 ~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~----  358 (425)
T 1r5m_A          284 CFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYD----  358 (425)
T ss_dssp             EECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEE----
T ss_pred             EecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEE----
Confidence            999999999999999999 999999999999999999999999999999999999999999999999999999954    


Q ss_pred             ceEEEecCCCE--------------------EEEEecCceeecccccCCccccccCCceEEeeehHHHHHhccCCC
Q psy4650         197 PAVSMDVNGCK--------------------IIWARHSEVQQANLKTMPEVFENITAGVVLTLSVHVTIKYRLDIS  252 (381)
Q Consensus       197 ~~~~~d~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~d~~~~~~d~~  252 (381)
                            ..++.                    ++.....+....    ....+.|+|+|..+++++.++..+.|++.
T Consensus       359 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~v~~~~~s~~~~~l~~~~~dg~i~iw~~~  424 (425)
T 1r5m_A          359 ------LKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDND----YIFDLSWNCAGNKISVAYSLQEGSVVAIP  424 (425)
T ss_dssp             ------CHHHHC--------------CEECCEEEEECCTTCCC----CEEEEEECTTSSEEEEEESSSCCEEEECC
T ss_pred             ------CCCCccceeeeecccccccCcccchhhhhhcCcccCC----ceEEEEccCCCceEEEEecCceEEEEeec
Confidence                  43332                    222222110000    11126788999999999999989888874

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.87  E-value=1.8e-21  Score=180.67  Aligned_cols=200  Identities=18%  Similarity=0.142  Sum_probs=157.4

Q ss_pred             eeeeecCCCceEEEEEecCCeEEEecCCCc--------cceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEE
Q psy4650          37 VDITTNKDMIEYKISYQESSRVKAFNPIQV--------ATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWD  108 (381)
Q Consensus        37 ~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~--------~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd  108 (381)
                      ..+.+.+++..++++++.+|.|++|++...        ....+..+.+|...|.+++|+|++.. +|++|+.||+|++|+
T Consensus       132 ~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~-~l~s~~~dg~i~vwd  210 (430)
T 2xyi_A          132 NRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNG-YLLSASDDHTICLWD  210 (430)
T ss_dssp             SEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTT-EEEEECTTSCEEEEE
T ss_pred             EEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCC-eEEEEeCCCeEEEEe
Confidence            455666666779999999999999998641        14567788999999999999997653 899999999999999


Q ss_pred             CCCCeE-------EEEeccCCCCEEEEEEec-CCCEEEEEeCCCCEEEEeCCCC---eeeEEEecCCcceEEEEEcCCCC
Q psy4650         109 YQNKTC-------VQTLEGHGQNISAVCFHP-ELPIVITGSEDGSVRVWHSGTH---RLEISLTYGLERVWTISSLKGSN  177 (381)
Q Consensus       109 ~~~~~~-------~~~~~~~~~~v~~~~~~p-~~~~l~s~~~d~~i~vwd~~~~---~~~~~~~~~~~~v~~v~~~~~~~  177 (381)
                      +..+..       ...+.+|...|.+++|+| ++..+++++.|+.|++||++++   .....+..|...|++++|+|++.
T Consensus       211 ~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~  290 (430)
T 2xyi_A          211 INATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSE  290 (430)
T ss_dssp             TTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCT
T ss_pred             CCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCC
Confidence            987421       456778999999999999 6679999999999999999987   57778888999999999999987


Q ss_pred             -EEEEEeCCCeEEEEecCCCceEEEecCC-CEEEEEecCceeecccccCCccccccCCce-EEeeehHHHHHhccCCCc
Q psy4650         178 -NVAIGYDEGSVLLKVGREEPAVSMDVNG-CKIIWARHSEVQQANLKTMPEVFENITAGV-VLTLSVHVTIKYRLDISD  253 (381)
Q Consensus       178 -~l~~~~~dg~v~i~~~~~~~~~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~-~l~~~~~d~~~~~~d~~~  253 (381)
                       ++++|+.||.+++|          |.+. +.++.....+      .+....+.|+|++. ++++++.++...+|++..
T Consensus       291 ~~l~tg~~dg~v~vw----------d~~~~~~~~~~~~~h------~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~  353 (430)
T 2xyi_A          291 FILATGSADKTVALW----------DLRNLKLKLHSFESH------KDEIFQVQWSPHNETILASSGTDRRLHVWDLSK  353 (430)
T ss_dssp             TEEEEEETTSEEEEE----------ETTCTTSCSEEEECC------SSCEEEEEECSSCTTEEEEEETTSCCEEEEGGG
T ss_pred             CEEEEEeCCCeEEEE----------eCCCCCCCeEEeecC------CCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCC
Confidence             78999999999995          4433 1111111111      00011156788885 688898999999999865

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.87  E-value=1.3e-20  Score=173.61  Aligned_cols=198  Identities=17%  Similarity=0.217  Sum_probs=165.7

Q ss_pred             cceeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeE
Q psy4650          35 TKVDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTC  114 (381)
Q Consensus        35 ~~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~  114 (381)
                      ....+.+.++ +.++++++.||.|++|+.   ....+..+.+|...|.+++|+|++.  +|++++.|+.|++||+.++..
T Consensus       110 ~v~~~~~s~~-~~~l~~~~~dg~i~i~~~---~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~iwd~~~~~~  183 (425)
T 1r5m_A          110 QVTCLAWSHD-GNSIVTGVENGELRLWNK---TGALLNVLNFHRAPIVSVKWNKDGT--HIISMDVENVTILWNVISGTV  183 (425)
T ss_dssp             CEEEEEECTT-SSEEEEEETTSCEEEEET---TSCEEEEECCCCSCEEEEEECTTSS--EEEEEETTCCEEEEETTTTEE
T ss_pred             ceEEEEEcCC-CCEEEEEeCCCeEEEEeC---CCCeeeeccCCCccEEEEEECCCCC--EEEEEecCCeEEEEECCCCcE
Confidence            3456667775 568999999999999994   4566788899999999999999776  899999999999999987654


Q ss_pred             EE--------------------------------------------------------EeccCCCCEEEEEEecCCCEEE
Q psy4650         115 VQ--------------------------------------------------------TLEGHGQNISAVCFHPELPIVI  138 (381)
Q Consensus       115 ~~--------------------------------------------------------~~~~~~~~v~~~~~~p~~~~l~  138 (381)
                      +.                                                        .+.+|...|.+++|+|++..++
T Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  263 (425)
T 1r5m_A          184 MQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLL  263 (425)
T ss_dssp             EEEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEE
T ss_pred             EEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEE
Confidence            43                                                        3346778899999999999999


Q ss_pred             EEeCCCCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCceEEEecCCCEEEEEecCceee
Q psy4650         139 TGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKVGREEPAVSMDVNGCKIIWARHSEVQQ  218 (381)
Q Consensus       139 s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~~~~~~~~~~d~~~~~~~~~~~~~~~~  218 (381)
                      +++.|+.|++||+.+++....+..|...+.+++|+|++ .+++++.||.+++          ||..++..+.....+.. 
T Consensus       264 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i----------~d~~~~~~~~~~~~~~~-  331 (425)
T 1r5m_A          264 SASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRL----------WSLKQNTLLALSIVDGV-  331 (425)
T ss_dssp             EEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEE----------EETTTTEEEEEEECTTC-
T ss_pred             EEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEE----------EECCCCcEeEecccCCc-
Confidence            99999999999999999999999999999999999999 9999999999999          78777777665543211 


Q ss_pred             cccccCCccccccCCceEEeeehHHHHHhccCCCcCh
Q psy4650         219 ANLKTMPEVFENITAGVVLTLSVHVTIKYRLDISDSH  255 (381)
Q Consensus       219 ~~~~~~~~~~~~~~dg~~l~~~~~d~~~~~~d~~~~~  255 (381)
                       .+    ..+.|+|+|..+++++.++...+|++....
T Consensus       332 -~i----~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~  363 (425)
T 1r5m_A          332 -PI----FAGRISQDGQKYAVAFMDGQVNVYDLKKLN  363 (425)
T ss_dssp             -CE----EEEEECTTSSEEEEEETTSCEEEEECHHHH
T ss_pred             -cE----EEEEEcCCCCEEEEEECCCeEEEEECCCCc
Confidence             11    115678999999999999999999986543

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.87  E-value=1.2e-20  Score=173.35  Aligned_cols=200  Identities=15%  Similarity=0.151  Sum_probs=154.1

Q ss_pred             EEEEEecCCeEEEecCCCccceeeEeec-cccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEEEeccCCCCEE
Q psy4650          48 YKISYQESSRVKAFNPIQVATLILKTLY-GHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNIS  126 (381)
Q Consensus        48 ~~~s~~~d~~v~i~~~~~~~~~~~~~l~-~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~  126 (381)
                      .+++++.|+.|++|+.....  ....+. .|.+.|.+++|+|++.  +|++|+.||.|++||+.+++.+..+.+|...|.
T Consensus       105 ~l~~~~~d~~v~lw~~~~~~--~~~~~~~~~~~~v~~v~~s~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~  180 (401)
T 4aez_A          105 NVVAVALERNVYVWNADSGS--VSALAETDESTYVASVKWSHDGS--FLSVGLGNGLVDIYDVESQTKLRTMAGHQARVG  180 (401)
T ss_dssp             SEEEEEETTEEEEEETTTCC--EEEEEECCTTCCEEEEEECTTSS--EEEEEETTSCEEEEETTTCCEEEEECCCSSCEE
T ss_pred             CEEEEECCCeEEEeeCCCCc--EeEeeecCCCCCEEEEEECCCCC--EEEEECCCCeEEEEECcCCeEEEEecCCCCceE
Confidence            47788999999999997533  333433 3899999999999776  899999999999999999999999999999999


Q ss_pred             EEEEecCCCEEEEEeCCCCEEEEeCC-CCeeeEEEecCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCC---------
Q psy4650         127 AVCFHPELPIVITGSEDGSVRVWHSG-THRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKVGREE---------  196 (381)
Q Consensus       127 ~~~~~p~~~~l~s~~~d~~i~vwd~~-~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~~~~~---------  196 (381)
                      +++|+  +..+++|+.|+.|++||++ .+.....+.+|...|.+++|+|++.++++|+.||.+++|+....         
T Consensus       181 ~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~  258 (401)
T 4aez_A          181 CLSWN--RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNH  258 (401)
T ss_dssp             EEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCC
T ss_pred             EEEEC--CCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCC
Confidence            99994  5799999999999999999 56678888899999999999999999999999999999873210         


Q ss_pred             ----ceEEEec-------------CCCEEEEEecCceeecccccC--CccccccCCceEEee--ehHHHHHhccCCCc
Q psy4650         197 ----PAVSMDV-------------NGCKIIWARHSEVQQANLKTM--PEVFENITAGVVLTL--SVHVTIKYRLDISD  253 (381)
Q Consensus       197 ----~~~~~d~-------------~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~dg~~l~~--~~~d~~~~~~d~~~  253 (381)
                          ..+.|.+             ++...+|+.........+...  ...+.|+|+|..+++  +..++....|++..
T Consensus       259 ~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~  336 (401)
T 4aez_A          259 NAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSS  336 (401)
T ss_dssp             SSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEET
T ss_pred             cceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCC
Confidence                0011111             222334443333222222111  112678999999998  55888888998754

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.87  E-value=5.9e-21  Score=177.50  Aligned_cols=186  Identities=10%  Similarity=0.150  Sum_probs=140.5

Q ss_pred             hcceeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccc-----cEEEEEeeeCCCccEEEEEcCCCeEEEEE
Q psy4650          34 ETKVDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEK-----GVNCVDYYHGGDKPYLISGADDRLVKIWD  108 (381)
Q Consensus        34 ~~~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~-----~v~~~~~~~~~~~~~l~s~~~d~~v~vwd  108 (381)
                      .....+.+.|+ +..+++++.||++++|+..    ..+..+. |..     .|.+++|||+|.  +|++|+.||+|++||
T Consensus        86 ~~V~~vawSPd-G~~LAs~s~dg~V~iwd~~----~~l~~l~-~~~~~~~~sv~svafSPDG~--~LAsgs~DGtVkIWd  157 (588)
T 2j04_A           86 CYPRVCKPSPI-DDWMAVLSNNGNVSVFKDN----KMLTNLD-SKGNLSSRTYHCFEWNPIES--SIVVGNEDGELQFFS  157 (588)
T ss_dssp             CCEEEEEECSS-SSCEEEEETTSCEEEEETT----EEEEECC-CSSCSTTTCEEEEEECSSSS--CEEEEETTSEEEEEE
T ss_pred             CcEEEEEECCC-CCEEEEEeCCCcEEEEeCC----ceeeecc-CCCccccccEEEEEEcCCCC--EEEEEcCCCEEEEEE
Confidence            34567778887 6689999999999999953    2666677 766     499999999887  899999999999999


Q ss_pred             CCCCe-------EEEEe----ccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCee---eEEE-ecCCcceEEEEEc
Q psy4650         109 YQNKT-------CVQTL----EGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRL---EISL-TYGLERVWTISSL  173 (381)
Q Consensus       109 ~~~~~-------~~~~~----~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~---~~~~-~~~~~~v~~v~~~  173 (381)
                      +.++.       .+.++    .+|.+.|.+++|+|+|  +++++.|+++++||+.++..   ..++ .+|...|.+++|+
T Consensus       158 ~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs  235 (588)
T 2j04_A          158 IRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV  235 (588)
T ss_dssp             CCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE
T ss_pred             CCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE
Confidence            99875       35666    6788899999999999  88889999999999988774   3556 4688899999999


Q ss_pred             CCCCEEEEEeCCCeEEEEecCCCceEEEecCCCEE-EEEecCceeecccccCCccccc--cCCceEEeeehHHHHHhccC
Q psy4650         174 KGSNNVAIGYDEGSVLLKVGREEPAVSMDVNGCKI-IWARHSEVQQANLKTMPEVFEN--ITAGVVLTLSVHVTIKYRLD  250 (381)
Q Consensus       174 ~~~~~l~~~~~dg~v~i~~~~~~~~~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~dg~~l~~~~~d~~~~~~d  250 (381)
                        |..+++++ ++.+++          ||..++.. .....   +...+..    +.+  +||+..+++++.++. ..|.
T Consensus       236 --g~~LASa~-~~tIkL----------Wd~~~~~~~~~~~g---h~~~V~~----va~~~s~d~~~La~a~edG~-klw~  294 (588)
T 2j04_A          236 --DYKVVLTC-PGYVHK----------IDLKNYSISSLKTG---SLENFHI----IPLNHEKESTILLMSNKTSY-KVLL  294 (588)
T ss_dssp             --TTEEEEEC-SSEEEE----------EETTTTEEEEEECS---CCSCCCE----EEETTCSSCEEEEECSSCEE-EEEE
T ss_pred             --CCEEEEEe-CCeEEE----------EECCCCeEEEEEcC---CCceEEE----EEeeeCCCCCEEEEEcCCCC-EEEe
Confidence              68999887 699999          66655555 22211   1111111    244  566666666665555 4443

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.87  E-value=8.9e-21  Score=176.18  Aligned_cols=207  Identities=13%  Similarity=0.113  Sum_probs=157.1

Q ss_pred             ceeeeecCCCceEEEEEecCCeEEEecCCCc-cceeeEeecc------------ccccEEEEEeeeCCCccEEEEEcCCC
Q psy4650          36 KVDITTNKDMIEYKISYQESSRVKAFNPIQV-ATLILKTLYG------------HEKGVNCVDYYHGGDKPYLISGADDR  102 (381)
Q Consensus        36 ~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~-~~~~~~~l~~------------h~~~v~~~~~~~~~~~~~l~s~~~d~  102 (381)
                      ...+.+.++ ..++++++.||+|++|++... ....+..+.+            +...+.++.+....+..++++|+.|+
T Consensus       114 v~~~~~~~~-~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~  192 (437)
T 3gre_A          114 VTQITMIPN-FDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLS  192 (437)
T ss_dssp             EEEEEECTT-SSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTS
T ss_pred             EEEEEEeCC-CCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCC
Confidence            345666664 568999999999999998421 1112222221            55677777754433445899999999


Q ss_pred             eEEEEECCCCeEEEEecc--CCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEe-cCCcceEEEEEcC----C
Q psy4650         103 LVKIWDYQNKTCVQTLEG--HGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLT-YGLERVWTISSLK----G  175 (381)
Q Consensus       103 ~v~vwd~~~~~~~~~~~~--~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~-~~~~~v~~v~~~~----~  175 (381)
                      .|++||+.+++.+..+.+  |.+.|.+++|+|++.++++|+.||.|++||+++++.+..+. .|...|.+++|+|    +
T Consensus       193 ~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~  272 (437)
T 3gre_A          193 RVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKN  272 (437)
T ss_dssp             EEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTT
T ss_pred             eEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCC
Confidence            999999999999999988  88999999999999999999999999999999999999886 6778999996664    5


Q ss_pred             CCEEEEEeCCCeEEEEecCCCceEEEecCCCEEEEEecCceeecc---------------ccc--C---CccccccCCce
Q psy4650         176 SNNVAIGYDEGSVLLKVGREEPAVSMDVNGCKIIWARHSEVQQAN---------------LKT--M---PEVFENITAGV  235 (381)
Q Consensus       176 ~~~l~~~~~dg~v~i~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~---------------~~~--~---~~~~~~~~dg~  235 (381)
                      +.++++|+.||.+++          ||..++..+.....+.....               +.+  +   ...++++ ++.
T Consensus       273 ~~~l~s~~~dg~i~i----------wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~  341 (437)
T 3gre_A          273 SVIVVGGSSKTFLTI----------WNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDK  341 (437)
T ss_dssp             EEEEEEESTTEEEEE----------EETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTE
T ss_pred             ccEEEEEcCCCcEEE----------EEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-Cce
Confidence            779999999999999          77777776655443211110               001  0   0114566 779


Q ss_pred             EEeeehHHHHHhccCCCcC
Q psy4650         236 VLTLSVHVTIKYRLDISDS  254 (381)
Q Consensus       236 ~l~~~~~d~~~~~~d~~~~  254 (381)
                      .+++++.|+.++.|++...
T Consensus       342 ~l~s~~~d~~i~~wd~~~~  360 (437)
T 3gre_A          342 ILLTDEATSSIVMFSLNEL  360 (437)
T ss_dssp             EEEEEGGGTEEEEEETTCG
T ss_pred             EEEecCCCCeEEEEECCCc
Confidence            9999999999999998754

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.87  E-value=3e-21  Score=194.46  Aligned_cols=200  Identities=11%  Similarity=0.061  Sum_probs=158.9

Q ss_pred             ceeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEE
Q psy4650          36 KVDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCV  115 (381)
Q Consensus        36 ~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~  115 (381)
                      ..++.++++ +.++++|+.||+|++|+...  ...... ..|...|.+++|+| +.  +|++++.|++|++||+.+++.+
T Consensus        20 V~~lafspd-g~~lAsgs~Dg~I~lw~~~~--~~~~~~-~~~~~~V~~l~fsp-g~--~L~S~s~D~~v~lWd~~~~~~~   92 (902)
T 2oaj_A           20 PIAAAFDFT-QNLLAIATVTGEVHIYGQQQ--VEVVIK-LEDRSAIKEMRFVK-GI--YLVVINAKDTVYVLSLYSQKVL   92 (902)
T ss_dssp             EEEEEEETT-TTEEEEEETTSEEEEECSTT--CEEEEE-CSSCCCEEEEEEET-TT--EEEEEETTCEEEEEETTTCSEE
T ss_pred             cEEEEECCC-CCEEEEEeCCCEEEEEeCCC--cEEEEE-cCCCCCEEEEEEcC-CC--EEEEEECcCeEEEEECCCCcEE
Confidence            456777777 56999999999999999853  223333 35888999999999 55  8999999999999999999988


Q ss_pred             EEeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeee-----------EEEecCCcceEEEEEcCC-CCEEEEEe
Q psy4650         116 QTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLE-----------ISLTYGLERVWTISSLKG-SNNVAIGY  183 (381)
Q Consensus       116 ~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~-----------~~~~~~~~~v~~v~~~~~-~~~l~~~~  183 (381)
                      ..+. |.+.|.+++|+|++.++++|+.||.|++||+.++...           ..+.+|...|.+++|+|+ +..+++|+
T Consensus        93 ~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~  171 (902)
T 2oaj_A           93 TTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISY  171 (902)
T ss_dssp             EEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEEC
T ss_pred             EEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEe
Confidence            8886 7789999999999999999999999999999988763           223568889999999996 57899999


Q ss_pred             CCCeEEEEecCCCceEEEecCCCEEEEEecCceeecc---------cc---cCCccccccCCceEEeeehHHHHHhccCC
Q psy4650         184 DEGSVLLKVGREEPAVSMDVNGCKIIWARHSEVQQAN---------LK---TMPEVFENITAGVVLTLSVHVTIKYRLDI  251 (381)
Q Consensus       184 ~dg~v~i~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~---------~~---~~~~~~~~~~dg~~l~~~~~d~~~~~~d~  251 (381)
                      .||.+ +          ||..++.++.....+.....         ..   .....++|+|||..+++++.|+.+..||+
T Consensus       172 ~dg~v-l----------Wd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~  240 (902)
T 2oaj_A          172 EYVTL-T----------YSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDA  240 (902)
T ss_dssp             SSCEE-E----------EETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEET
T ss_pred             CCCcE-E----------EECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEEC
Confidence            99999 9          77777776655433210000         00   11112688999999999999999999998


Q ss_pred             CcC
Q psy4650         252 SDS  254 (381)
Q Consensus       252 ~~~  254 (381)
                      ...
T Consensus       241 ~~g  243 (902)
T 2oaj_A          241 NSG  243 (902)
T ss_dssp             TTC
T ss_pred             CCC
Confidence            654

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.87  E-value=6.4e-21  Score=192.06  Aligned_cols=148  Identities=13%  Similarity=0.060  Sum_probs=123.6

Q ss_pred             ecCCCceEEEEEecCCeEEEecCCCccce---eeE-eec-----cccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCC
Q psy4650          41 TNKDMIEYKISYQESSRVKAFNPIQVATL---ILK-TLY-----GHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQN  111 (381)
Q Consensus        41 ~~~~~~~~~~s~~~d~~v~i~~~~~~~~~---~~~-~l~-----~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~  111 (381)
                      +.++ +.++++|+.|++|++||.......   .+. .+.     +|...|.+++|+|++.  +||+|+.||+|++||+.+
T Consensus       443 ~spd-g~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~--~LAsgs~DgtV~lwd~~~  519 (902)
T 2oaj_A          443 PAEY-GTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETL--ELAVSIETGDVVLFKYEV  519 (902)
T ss_dssp             CCSE-EEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTT--EEEEEETTSCEEEEEEEE
T ss_pred             cccc-CcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCC--eEEEEecCcEEEEEEecC
Confidence            3444 679999999999999998653211   011 122     8999999999999887  899999999999999976


Q ss_pred             C---------------------------------------------eEEEEeccCCCCEEEEEEecCCCEEEEEeCCCCE
Q psy4650         112 K---------------------------------------------TCVQTLEGHGQNISAVCFHPELPIVITGSEDGSV  146 (381)
Q Consensus       112 ~---------------------------------------------~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i  146 (381)
                      +                                             .++..+.+|.++|++++|+|+| +||+|+.|++|
T Consensus       520 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv  598 (902)
T 2oaj_A          520 NQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSL  598 (902)
T ss_dssp             CCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEE
T ss_pred             ccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcE
Confidence            5                                             2467788999999999999999 99999999999


Q ss_pred             EEEeCCCCeeeEE-----Ee-cCCcceEEEEEc-----CCC---CEEEEEeCCCeEEEEe
Q psy4650         147 RVWHSGTHRLEIS-----LT-YGLERVWTISSL-----KGS---NNVAIGYDEGSVLLKV  192 (381)
Q Consensus       147 ~vwd~~~~~~~~~-----~~-~~~~~v~~v~~~-----~~~---~~l~~~~~dg~v~i~~  192 (381)
                      ++||+.++..+..     +. +|...|++++|+     |+|   .+|++|+.||++++|+
T Consensus       599 ~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd  658 (902)
T 2oaj_A          599 MLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYK  658 (902)
T ss_dssp             EEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEE
T ss_pred             EEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEE
Confidence            9999988876542     22 788899999999     885   7999999999999965

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.87  E-value=2.5e-20  Score=164.72  Aligned_cols=182  Identities=13%  Similarity=0.163  Sum_probs=152.7

Q ss_pred             ceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeee-CCCccEEEEEcCCCeEEEEECCCCeEEEEecc-CCC
Q psy4650          46 IEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYH-GGDKPYLISGADDRLVKIWDYQNKTCVQTLEG-HGQ  123 (381)
Q Consensus        46 ~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~-~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~-~~~  123 (381)
                      +.++++++.|+.+++||.    ......+.+|...+.++.|+| ++.  ++++++.|+.|++||  .+.....+.. |..
T Consensus       114 ~~~l~~~~~d~~i~~~d~----~~~~~~~~~~~~~v~~~~~~~~~~~--~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~  185 (313)
T 3odt_A          114 DGVVISGSWDKTAKVWKE----GSLVYNLQAHNASVWDAKVVSFSEN--KFLTASADKTIKLWQ--NDKVIKTFSGIHND  185 (313)
T ss_dssp             TTEEEEEETTSEEEEEET----TEEEEEEECCSSCEEEEEEEETTTT--EEEEEETTSCEEEEE--TTEEEEEECSSCSS
T ss_pred             CCEEEEEeCCCCEEEEcC----CcEEEecccCCCceeEEEEccCCCC--EEEEEECCCCEEEEe--cCceEEEEeccCcc
Confidence            458999999999999993    456678889999999999998 555  899999999999999  4566777777 889


Q ss_pred             CEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCceEEEec
Q psy4650         124 NISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKVGREEPAVSMDV  203 (381)
Q Consensus       124 ~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~~~~~~~~~~d~  203 (381)
                      .+.+++|+|++. +++++.|+.|++||+++++.+..+..|...+.+++|+|++ .+++++.||.+++          ||.
T Consensus       186 ~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~i----------wd~  253 (313)
T 3odt_A          186 VVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRI----------WSK  253 (313)
T ss_dssp             CEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-CEEEEETTSEEEE----------ECT
T ss_pred             cEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCC-CEEEEecCCEEEE----------EEC
Confidence            999999999998 9999999999999999999999999999999999999999 5889999999999          777


Q ss_pred             CCCEEEEEecCceeecccccCCccccccCCceEEeeehHHHHHhccCCCcC
Q psy4650         204 NGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSVHVTIKYRLDISDS  254 (381)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~d~~~~~~d~~~~  254 (381)
                      .++.++.....+..  .+    ..+.|+|+|. +++++.++..+.|++...
T Consensus       254 ~~~~~~~~~~~~~~--~i----~~~~~~~~~~-~~~~~~dg~i~iw~~~~~  297 (313)
T 3odt_A          254 ENGSLKQVITLPAI--SI----WSVDCMSNGD-IIVGSSDNLVRIFSQEKS  297 (313)
T ss_dssp             TTCCEEEEEECSSS--CE----EEEEECTTSC-EEEEETTSCEEEEESCGG
T ss_pred             CCCceeEEEeccCc--eE----EEEEEccCCC-EEEEeCCCcEEEEeCCCC
Confidence            77766655433211  11    1156789998 556888889999998754

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.86  E-value=9.8e-21  Score=171.16  Aligned_cols=210  Identities=10%  Similarity=0.009  Sum_probs=145.6

Q ss_pred             cCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCC---------------c--------------
Q psy4650          42 NKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGD---------------K--------------   92 (381)
Q Consensus        42 ~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~---------------~--------------   92 (381)
                      ......+.++++.+++|++||..+  ...+..+. |...|.++.|+++..               .              
T Consensus        67 ~~~~~~~~~~~~~d~~v~iWd~~~--~~~~~~~~-~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~  143 (355)
T 3vu4_A           67 LHRTNYVAFVTGVKEVVHIWDDVK--KQDVSRIK-VDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIRFGGVC  143 (355)
T ss_dssp             CTTSSEEEEECSSTTEEEEEETTT--TEEEEEEE-CSSCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEEEEEEE
T ss_pred             cCCCCEEEEEECCccEEEEEECCC--CcEEEEEE-CCCceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEeccCCceE
Confidence            344344557788889999999864  34455554 566788887765320               0              


Q ss_pred             ----cEEEE--EcCCCeEEEEECCCCe---------------E-EEEeccCCCCEEEEEEecCCCEEEEEeCCCC-EEEE
Q psy4650          93 ----PYLIS--GADDRLVKIWDYQNKT---------------C-VQTLEGHGQNISAVCFHPELPIVITGSEDGS-VRVW  149 (381)
Q Consensus        93 ----~~l~s--~~~d~~v~vwd~~~~~---------------~-~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~-i~vw  149 (381)
                          .+++.  |+.||.|++||+.++.               + +..+.+|.++|.+++|+|++.++++|+.|++ |++|
T Consensus       144 ~~s~~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iw  223 (355)
T 3vu4_A          144 EFSNGLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVF  223 (355)
T ss_dssp             EEETTEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEE
T ss_pred             EEEccEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEE
Confidence                13333  6889999999998765               2 6788999999999999999999999999999 9999


Q ss_pred             eCCCCeeeEEEe-c-CCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCceEEEecCCCE-------EEEEecCceeecc
Q psy4650         150 HSGTHRLEISLT-Y-GLERVWTISSLKGSNNVAIGYDEGSVLLKVGREEPAVSMDVNGCK-------IIWARHSEVQQAN  220 (381)
Q Consensus       150 d~~~~~~~~~~~-~-~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~~~~~~~~~~d~~~~~-------~~~~~~~~~~~~~  220 (381)
                      |+.+++.+..+. + |...|.+++|+|+|++|++++.|+.+++|+-..........-.+.       ..|..........
T Consensus       224 d~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (355)
T 3vu4_A          224 KTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVD  303 (355)
T ss_dssp             ETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCC
T ss_pred             ECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccC
Confidence            999999999998 5 899999999999999999999999999966432211000000000       0000000000000


Q ss_pred             cccCCccccccCCceEEeeehHHHHHhccCCCcC
Q psy4650         221 LKTMPEVFENITAGVVLTLSVHVTIKYRLDISDS  254 (381)
Q Consensus       221 ~~~~~~~~~~~~dg~~l~~~~~d~~~~~~d~~~~  254 (381)
                      .......++|++||..++++..++..+.|++...
T Consensus       304 ~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~  337 (355)
T 3vu4_A          304 KHVRGCKIAWISESSLVVVWPHTRMIETFKVVFD  337 (355)
T ss_dssp             TTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEE
T ss_pred             CCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcC
Confidence            0000022678999999999999888888876543

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.86  E-value=2e-20  Score=167.40  Aligned_cols=154  Identities=20%  Similarity=0.247  Sum_probs=130.8

Q ss_pred             ceeeeecCC-CceEEEEEecCCeEEEecCCCccc-------eeeEeeccccccEEEEEeeeC--CCccEEEEEcCCCeEE
Q psy4650          36 KVDITTNKD-MIEYKISYQESSRVKAFNPIQVAT-------LILKTLYGHEKGVNCVDYYHG--GDKPYLISGADDRLVK  105 (381)
Q Consensus        36 ~~~i~~~~~-~~~~~~s~~~d~~v~i~~~~~~~~-------~~~~~l~~h~~~v~~~~~~~~--~~~~~l~s~~~d~~v~  105 (381)
                      ...+.+.+. .+.++++++.||+|++|++.....       ..+..+.+|.+.|.+++|+|+  +.  ++++++.|+.|+
T Consensus        60 v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~l~~~~~dg~v~  137 (351)
T 3f3f_A           60 IVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGL--KLACLGNDGILR  137 (351)
T ss_dssp             EEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCS--EEEEEETTCEEE
T ss_pred             EEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCc--EEEEecCCCcEE
Confidence            345666663 367999999999999999865321       457788899999999999998  55  899999999999


Q ss_pred             EEECCCCe------------------------------------------------------------EEEEeccCCCCE
Q psy4650         106 IWDYQNKT------------------------------------------------------------CVQTLEGHGQNI  125 (381)
Q Consensus       106 vwd~~~~~------------------------------------------------------------~~~~~~~~~~~v  125 (381)
                      +||+.++.                                                            .+..+.+|...|
T Consensus       138 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i  217 (351)
T 3f3f_A          138 LYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLI  217 (351)
T ss_dssp             EEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCE
T ss_pred             EecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcce
Confidence            99986532                                                            145567899999


Q ss_pred             EEEEEecCC----CEEEEEeCCCCEEEEeCCCC----------------------------------------------e
Q psy4650         126 SAVCFHPEL----PIVITGSEDGSVRVWHSGTH----------------------------------------------R  155 (381)
Q Consensus       126 ~~~~~~p~~----~~l~s~~~d~~i~vwd~~~~----------------------------------------------~  155 (381)
                      .+++|+|++    .++++|+.|+.|++||+..+                                              .
T Consensus       218 ~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (351)
T 3f3f_A          218 RSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVE  297 (351)
T ss_dssp             EEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC---------------------------------------CCSEEEE
T ss_pred             eEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeeccccccc
Confidence            999999998    79999999999999999865                                              5


Q ss_pred             eeEEEecCCcceEEEEEcCCCCEEEEEeCCCeEEEE
Q psy4650         156 LEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLK  191 (381)
Q Consensus       156 ~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~  191 (381)
                      .+..+.+|...|++++|+|++++|++|+.||.+++|
T Consensus       298 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw  333 (351)
T 3f3f_A          298 LLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLW  333 (351)
T ss_dssp             EEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEE
T ss_pred             EEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEE
Confidence            667778899999999999999999999999999993

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.86  E-value=4.7e-21  Score=172.67  Aligned_cols=204  Identities=16%  Similarity=0.149  Sum_probs=154.9

Q ss_pred             ceeeeecCCC--ceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEe------eeCCCccEEEEEcCCCeEEEE
Q psy4650          36 KVDITTNKDM--IEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDY------YHGGDKPYLISGADDRLVKIW  107 (381)
Q Consensus        36 ~~~i~~~~~~--~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~------~~~~~~~~l~s~~~d~~v~vw  107 (381)
                      ...+.+.++.  +.++++++.||.|++|++.... ..+..+.+|.+.|.++.|      +|++.  +|++|+.|+.|++|
T Consensus        68 v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~s~~~~--~l~~~~~d~~i~vw  144 (357)
T 3i2n_A           68 IKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPE-MPVYSVKGHKEIINAIDGIGGLGIGEGAP--EIVTGSRDGTVKVW  144 (357)
T ss_dssp             EEEEECTTCCTTTCCEEEEETTSCEEEECTTSCS-SCSEEECCCSSCEEEEEEESGGGCC-CCC--EEEEEETTSCEEEE
T ss_pred             EEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCC-ccEEEEEecccceEEEeeccccccCCCcc--EEEEEeCCCeEEEE
Confidence            3466667764  6799999999999999997532 356788999999999966      45555  89999999999999


Q ss_pred             ECCCCe-EEEEeccCCC----CEEEEE----EecCCCEEEEEeCCCCEEEEeCCCCeeeEEEecCCcceEEEEEcC---C
Q psy4650         108 DYQNKT-CVQTLEGHGQ----NISAVC----FHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLK---G  175 (381)
Q Consensus       108 d~~~~~-~~~~~~~~~~----~v~~~~----~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~---~  175 (381)
                      |+.++. ....+..|.+    .+.+++    |+|++..+++++.|+.|++||+++++.... ..+...+.+++|+|   +
T Consensus       145 d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~~~~~  223 (357)
T 3i2n_A          145 DPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEFDRKDIS  223 (357)
T ss_dssp             CTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEESCSSSS
T ss_pred             eCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeee-cCCCCceEEEEcCCCCCC
Confidence            999886 6777766554    788988    678999999999999999999999987554 55788999999999   8


Q ss_pred             CCEEEEEeCCCeEEEEecCCCceEEEecCCCEEEEEecCceeecccccCCccccccCCce-EEeeehHHHHHhccCCCcC
Q psy4650         176 SNNVAIGYDEGSVLLKVGREEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGV-VLTLSVHVTIKYRLDISDS  254 (381)
Q Consensus       176 ~~~l~~~~~dg~v~i~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~-~l~~~~~d~~~~~~d~~~~  254 (381)
                      +..+++++.||.+++          ||..++.+............ ......+.|+|++. ++++++.++..+.|++...
T Consensus       224 ~~~l~~~~~dg~i~i----------~d~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  292 (357)
T 3i2n_A          224 MNKLVATSLEGKFHV----------FDMRTQHPTKGFASVSEKAH-KSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYP  292 (357)
T ss_dssp             CCEEEEEESTTEEEE----------EEEEEEETTTEEEEEEEECC-SSCEEEEEEETTEEEEEEEEETTSEEEEEEEECC
T ss_pred             CCEEEEECCCCeEEE----------EeCcCCCcccceeeeccCCC-cCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCC
Confidence            999999999999999          55543332111100000000 01111157889998 8999999999999998654

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.86  E-value=8.8e-20  Score=161.19  Aligned_cols=207  Identities=16%  Similarity=0.188  Sum_probs=157.6

Q ss_pred             eeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCC---e
Q psy4650          37 VDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNK---T  113 (381)
Q Consensus        37 ~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~---~  113 (381)
                      ..+.+ ++ +.++++++.||.|++|++..  ......+.+|.+.|.+++|+|++.  ++++|+.|+.+++|++...   .
T Consensus        22 ~~~~~-~~-~~~l~s~~~dg~v~vw~~~~--~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~dg~i~~~~~~~~~~~~   95 (313)
T 3odt_A           22 RDVVA-VD-DSKVASVSRDGTVRLWSKDD--QWLGTVVYTGQGFLNSVCYDSEKE--LLLFGGKDTMINGVPLFATSGED   95 (313)
T ss_dssp             EEEEE-EE-TTEEEEEETTSEEEEEEESS--SEEEEEEEECSSCEEEEEEETTTT--EEEEEETTSCEEEEETTCCTTSC
T ss_pred             EEEEe-cC-CCEEEEEEcCCcEEEEECCC--CEEEEEeecCCccEEEEEECCCCC--EEEEecCCCeEEEEEeeecCCCC
Confidence            34445 43 45799999999999999863  456677889999999999999876  8999999999999998764   5


Q ss_pred             EEEEeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEecCCcceEEEEEcC-CCCEEEEEeCCCeEEEEe
Q psy4650         114 CVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLK-GSNNVAIGYDEGSVLLKV  192 (381)
Q Consensus       114 ~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~-~~~~l~~~~~dg~v~i~~  192 (381)
                      ....+.+|...|.+++|  ++..+++++.|+.|++||  .+.....+..|...+.++.|+| ++..+++++.||.+++|+
T Consensus        96 ~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d  171 (313)
T 3odt_A           96 PLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQ  171 (313)
T ss_dssp             C-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred             cccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEe
Confidence            67778899999999999  567999999999999999  7788888899999999999998 899999999999999986


Q ss_pred             cCC---------------------CceEEEecCCCEEEEEecCceeecccccCCc---cccccCCceEEeeehHHHHHhc
Q psy4650         193 GRE---------------------EPAVSMDVNGCKIIWARHSEVQQANLKTMPE---VFENITAGVVLTLSVHVTIKYR  248 (381)
Q Consensus       193 ~~~---------------------~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~dg~~l~~~~~d~~~~~  248 (381)
                      ...                     ..++.-..++...+|+.........+.++..   .+.|+|+| .+++++.++..+.
T Consensus       172 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~i  250 (313)
T 3odt_A          172 NDKVIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRI  250 (313)
T ss_dssp             TTEEEEEECSSCSSCEEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-CEEEEETTSEEEE
T ss_pred             cCceEEEEeccCcccEEEEEEcCCCeEEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCC-CEEEEecCCEEEE
Confidence            211                     1122222222334444443333333322221   25778888 5788888888899


Q ss_pred             cCCCcC
Q psy4650         249 LDISDS  254 (381)
Q Consensus       249 ~d~~~~  254 (381)
                      |++...
T Consensus       251 wd~~~~  256 (313)
T 3odt_A          251 WSKENG  256 (313)
T ss_dssp             ECTTTC
T ss_pred             EECCCC
Confidence            988653

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.85  E-value=6.8e-20  Score=168.05  Aligned_cols=216  Identities=13%  Similarity=0.082  Sum_probs=159.8

Q ss_pred             cceeeeecCCCceEEEEEecCCeEEEecCCCccceeeEee-----------ccccccEEEEEeeeCCCccEEEEEcCCCe
Q psy4650          35 TKVDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTL-----------YGHEKGVNCVDYYHGGDKPYLISGADDRL  103 (381)
Q Consensus        35 ~~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l-----------~~h~~~v~~~~~~~~~~~~~l~s~~~d~~  103 (381)
                      ...++.+.+..+.++++++.||.|++|++...........           .+|...|.+++|+|++. .++++++.|+.
T Consensus        45 ~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~l~s~~~d~~  123 (408)
T 4a11_B           45 GINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDT-GMFTSSSFDKT  123 (408)
T ss_dssp             CEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCT-TCEEEEETTSE
T ss_pred             cEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCC-cEEEEEeCCCe
Confidence            3456667773467999999999999999975332222111           36999999999999433 27999999999


Q ss_pred             EEEEECCCCeEEEEeccCCCCEEEEEEecCCC---EEEEEeCCCCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCC-EE
Q psy4650         104 VKIWDYQNKTCVQTLEGHGQNISAVCFHPELP---IVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSN-NV  179 (381)
Q Consensus       104 v~vwd~~~~~~~~~~~~~~~~v~~~~~~p~~~---~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~-~l  179 (381)
                      |++||+.++.....+. +...+.++.|+|.+.   .+++++.|+.|++||+.++.....+..|...|.+++|+|++. .+
T Consensus       124 i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll  202 (408)
T 4a11_B          124 LKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYIL  202 (408)
T ss_dssp             EEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEE
T ss_pred             EEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEE
Confidence            9999999999888777 778899999999554   999999999999999999999999999999999999999998 59


Q ss_pred             EEEeCCCeEEEEecCCC--ceEEEecCCCEEEEEecCceeecccccCCccccccCCceEEeeehHHHHHhccCCCcC
Q psy4650         180 AIGYDEGSVLLKVGREE--PAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSVHVTIKYRLDISDS  254 (381)
Q Consensus       180 ~~~~~dg~v~i~~~~~~--~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~d~~~~~~d~~~~  254 (381)
                      ++|+.||.+++|+-+..  .+..++...+.........  ..........++|+|+|..+++++.++..+.|++...
T Consensus       203 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~  277 (408)
T 4a11_B          203 ATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESA--NTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNG  277 (408)
T ss_dssp             EEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTS--SCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC
T ss_pred             EEEcCCCcEEEEECCCCCcccccccccccccceeeccc--cccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCC
Confidence            99999999999543321  2222221111100000000  0000111112678999999999999999999998754

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.85  E-value=1.3e-20  Score=169.51  Aligned_cols=152  Identities=9%  Similarity=-0.025  Sum_probs=121.2

Q ss_pred             ceeeeecC-CCceEEEEEecCCeEEEecCCCccceeeEee-ccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCe
Q psy4650          36 KVDITTNK-DMIEYKISYQESSRVKAFNPIQVATLILKTL-YGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKT  113 (381)
Q Consensus        36 ~~~i~~~~-~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l-~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~  113 (381)
                      ...+...+ ..+.++++++.||+|++||+....  .+... ..|...|.+++|+|++.  ++++|+.|+.|++||+.++.
T Consensus       128 v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~--~~~~~~~~~~~~i~~~~~~pdg~--~lasg~~dg~i~iwd~~~~~  203 (343)
T 3lrv_A          128 IIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDS--QYIVHSAKSDVEYSSGVLHKDSL--LLALYSPDGILDVYNLSSPD  203 (343)
T ss_dssp             EEEEECCC---CCEEEEEETTCCEEEEESSSSC--EEEEECCCSSCCCCEEEECTTSC--EEEEECTTSCEEEEESSCTT
T ss_pred             EEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCc--EEEEEecCCCCceEEEEECCCCC--EEEEEcCCCEEEEEECCCCC
Confidence            34555666 136799999999999999997533  34444 34566899999999877  89999999999999999998


Q ss_pred             EE-EEecc-CCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEec---CCcce--EEEEEcCCCCEEEEEeC-C
Q psy4650         114 CV-QTLEG-HGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTY---GLERV--WTISSLKGSNNVAIGYD-E  185 (381)
Q Consensus       114 ~~-~~~~~-~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~---~~~~v--~~v~~~~~~~~l~~~~~-d  185 (381)
                      .. ..+.+ |.++|.+++|+|++.+|++++ |+.|++||++++.....+..   +...+  .+++|+|+|+++++++. |
T Consensus       204 ~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d  282 (343)
T 3lrv_A          204 QASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNES  282 (343)
T ss_dssp             SCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTT
T ss_pred             CCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCC
Confidence            77 78888 999999999999999999999 45999999998876554432   22333  46999999999999998 9


Q ss_pred             CeEEEEe
Q psy4650         186 GSVLLKV  192 (381)
Q Consensus       186 g~v~i~~  192 (381)
                      +.+++|.
T Consensus       283 ~~i~v~~  289 (343)
T 3lrv_A          283 NSLTIYK  289 (343)
T ss_dssp             TEEEEEE
T ss_pred             CcEEEEE
Confidence            9999943

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.85  E-value=4.8e-20  Score=178.40  Aligned_cols=198  Identities=13%  Similarity=0.110  Sum_probs=164.6

Q ss_pred             ceeeeecC--CCceEEEEEecCCeEEEecCCCc------cceeeEeeccccccEEEEEeeeCCCccEEEEEcCC----Ce
Q psy4650          36 KVDITTNK--DMIEYKISYQESSRVKAFNPIQV------ATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADD----RL  103 (381)
Q Consensus        36 ~~~i~~~~--~~~~~~~s~~~d~~v~i~~~~~~------~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d----~~  103 (381)
                      ...+.+.+  + +.++++++.||+|++|++...      ....+..+.+|...|.+++|+|++.  ++++++.+    +.
T Consensus        67 v~~~~~sp~~~-~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~~~~~~~~  143 (615)
T 1pgu_A           67 VTTVKFSPIKG-SQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGR--RLCVVGEGRDNFGV  143 (615)
T ss_dssp             EEEEEECSSTT-CCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSS--EEEEEECCSSCSEE
T ss_pred             EEEEEECcCCC-CCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCC--EEEEeccCCCCccE
Confidence            45666777  5 669999999999999998643      3466778889999999999999877  78888887    68


Q ss_pred             EEEEECCCCeEEEEeccCCCCEEEEEEecCCC-EEEEEeCCCCEEEEeCCCCeeeEEEecCCc---ceEEEEEcCC-CCE
Q psy4650         104 VKIWDYQNKTCVQTLEGHGQNISAVCFHPELP-IVITGSEDGSVRVWHSGTHRLEISLTYGLE---RVWTISSLKG-SNN  178 (381)
Q Consensus       104 v~vwd~~~~~~~~~~~~~~~~v~~~~~~p~~~-~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~---~v~~v~~~~~-~~~  178 (381)
                      |.+||  .+..+..+.+|...|.+++|+|+++ .+++++.|+.|++||+.+++....+..|..   .|.+++|+|+ +.+
T Consensus       144 v~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  221 (615)
T 1pgu_A          144 FISWD--SGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEF  221 (615)
T ss_dssp             EEETT--TCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCE
T ss_pred             EEEEE--CCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCE
Confidence            88888  5678889999999999999999998 899999999999999999999999999988   9999999999 999


Q ss_pred             EEEEeCCCeEEEEecCCCceEEEecCCCEEEEEecCc--eeecccccCCccccccCCceEEeeehHHHHHhccCCCc
Q psy4650         179 VAIGYDEGSVLLKVGREEPAVSMDVNGCKIIWARHSE--VQQANLKTMPEVFENITAGVVLTLSVHVTIKYRLDISD  253 (381)
Q Consensus       179 l~~~~~dg~v~i~~~~~~~~~~~d~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~dg~~l~~~~~d~~~~~~d~~~  253 (381)
                      +++++.||.+++          ||..++..+......  .+...+.    .+.|+ ++..+++++.++....|++..
T Consensus       222 l~~~~~dg~i~v----------wd~~~~~~~~~~~~~~~~~~~~v~----~~~~~-~~~~l~~~~~d~~i~~wd~~~  283 (615)
T 1pgu_A          222 VITVGSDRKISC----------FDGKSGEFLKYIEDDQEPVQGGIF----ALSWL-DSQKFATVGADATIRVWDVTT  283 (615)
T ss_dssp             EEEEETTCCEEE----------EETTTCCEEEECCBTTBCCCSCEE----EEEES-SSSEEEEEETTSEEEEEETTT
T ss_pred             EEEEeCCCeEEE----------EECCCCCEeEEecccccccCCceE----EEEEc-CCCEEEEEcCCCcEEEEECCC
Confidence            999999999999          777777666554110  1111111    14567 899999999999999999864

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.85  E-value=1e-19  Score=164.36  Aligned_cols=182  Identities=19%  Similarity=0.190  Sum_probs=146.6

Q ss_pred             eeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEEEeccCCCCEEEEEEecCCCEEEEEeCCCCEEE
Q psy4650          69 LILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRV  148 (381)
Q Consensus        69 ~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~v  148 (381)
                      .....+.+|.+.|.+++|+|++.  +|++|+.|+.|++||+.+++.+..+.+|...|.+++|+|++.++++++.|+.|++
T Consensus        23 ~~~~~l~~h~~~v~~~~~s~~~~--~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~i  100 (369)
T 3zwl_B           23 MKAIKLTGHERPLTQVKYNKEGD--LLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKL  100 (369)
T ss_dssp             EEEEEEECCSSCEEEEEECTTSC--EEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEE
T ss_pred             cccEEEEEeeceEEEEEEcCCCC--EEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEE
Confidence            34567889999999999999876  8999999999999999999999999999999999999999999999999999999


Q ss_pred             EeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCC-----CeEEEEecCCC---------------------------
Q psy4650         149 WHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDE-----GSVLLKVGREE---------------------------  196 (381)
Q Consensus       149 wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d-----g~v~i~~~~~~---------------------------  196 (381)
                      ||+.+++.+..+. +...+.+++|+|++.++++++.+     |.+.+|+....                           
T Consensus       101 wd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (369)
T 3zwl_B          101 WDVSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAAT  179 (369)
T ss_dssp             EETTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEE
T ss_pred             EECCCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCcccee
Confidence            9999999988887 77899999999999999999998     99999862211                           


Q ss_pred             ---------ceEEEecCCCEEEEEecC-ceeecccccCC---ccccccCCceEEeeehHHHHHhccCCCc
Q psy4650         197 ---------PAVSMDVNGCKIIWARHS-EVQQANLKTMP---EVFENITAGVVLTLSVHVTIKYRLDISD  253 (381)
Q Consensus       197 ---------~~~~~d~~~~~~~~~~~~-~~~~~~~~~~~---~~~~~~~dg~~l~~~~~d~~~~~~d~~~  253 (381)
                               .++.-..++...+|+... ......+..+.   ..+.|+|++..+++++.++....||+..
T Consensus       180 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~  249 (369)
T 3zwl_B          180 VAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVST  249 (369)
T ss_dssp             EEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred             EEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCC
Confidence                     111112223344555544 22222222221   1267899999999999999999999864

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.85  E-value=1.3e-19  Score=189.39  Aligned_cols=151  Identities=15%  Similarity=0.179  Sum_probs=133.1

Q ss_pred             eeeecCC-CceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEE
Q psy4650          38 DITTNKD-MIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQ  116 (381)
Q Consensus        38 ~i~~~~~-~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~  116 (381)
                      .+.+.++ ...++++++.|++|++||+..  ...+..+.+|.+.|.+++|+|++.  ++++|+.||+|++||+.++....
T Consensus       704 ~~~~~~~~~~~~l~sg~~d~~v~vwd~~~--~~~~~~~~~h~~~v~~~~~sp~~~--~l~s~s~dg~v~vwd~~~~~~~~  779 (1249)
T 3sfz_A          704 CCHFTNKSNHLLLATGSNDFFLKLWDLNQ--KECRNTMFGHTNSVNHCRFSPDDE--LLASCSADGTLRLWDVRSANERK  779 (1249)
T ss_dssp             EEEECSSSSCCEEEEEETTSCEEEEETTS--SSEEEEECCCSSCEEEEEECSSTT--EEEEEESSSEEEEEEGGGTEEEE
T ss_pred             EEEEecCCCceEEEEEeCCCeEEEEECCC--cchhheecCCCCCEEEEEEecCCC--EEEEEECCCeEEEEeCCCCcccc
Confidence            4455553 456899999999999999974  456788899999999999999877  89999999999999987765433


Q ss_pred             Ee-------------------------------------------------------ccCCCCEEEEEEecCCCEEEEEe
Q psy4650         117 TL-------------------------------------------------------EGHGQNISAVCFHPELPIVITGS  141 (381)
Q Consensus       117 ~~-------------------------------------------------------~~~~~~v~~~~~~p~~~~l~s~~  141 (381)
                      .+                                                       .+|...|.+++|+|++..+++++
T Consensus       780 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~  859 (1249)
T 3sfz_A          780 SINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIAL  859 (1249)
T ss_dssp             EEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEEC
T ss_pred             eecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEe
Confidence            22                                                       16778899999999999999999


Q ss_pred             CCCCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCCCeEEEEe
Q psy4650         142 EDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKV  192 (381)
Q Consensus       142 ~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~  192 (381)
                      .|+.|++||+.++.....+.+|...|.+++|+|+|..+++++.||.+++|+
T Consensus       860 ~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~  910 (1249)
T 3sfz_A          860 SQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWE  910 (1249)
T ss_dssp             SSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             CCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEE
Confidence            999999999999999999999999999999999999999999999999997

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.84  E-value=1.3e-19  Score=168.75  Aligned_cols=137  Identities=26%  Similarity=0.396  Sum_probs=125.3

Q ss_pred             ceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEEEeccCCCCE
Q psy4650          46 IEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNI  125 (381)
Q Consensus        46 ~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v  125 (381)
                      +.++++|+.||+|++||+..  ...+..+.+|.+.|.++.|++  .  ++++|+.||+|++||+.+++.+..+.+|...|
T Consensus       129 g~~l~sg~~dg~i~vwd~~~--~~~~~~~~~h~~~v~~~~~~~--~--~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v  202 (445)
T 2ovr_B          129 GNRIVSGSDDNTLKVWSAVT--GKCLRTLVGHTGGVWSSQMRD--N--IIISGSTDRTLKVWNAETGECIHTLYGHTSTV  202 (445)
T ss_dssp             TTEEEEEETTSCEEEEETTT--CCEEEECCCCSSCEEEEEEET--T--EEEEEETTSCEEEEETTTTEEEEEECCCSSCE
T ss_pred             CCEEEEEECCCcEEEEECCC--CcEEEEEcCCCCCEEEEEecC--C--EEEEEeCCCeEEEEECCcCcEEEEECCCCCcE
Confidence            45899999999999999874  456788999999999999973  3  89999999999999999999999999999999


Q ss_pred             EEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCCCeEEEEe
Q psy4650         126 SAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKV  192 (381)
Q Consensus       126 ~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~  192 (381)
                      .+++|+  +..+++|+.|+.|++||+.+++.+..+.+|...+.++.+  ++..+++|+.||.+++|+
T Consensus       203 ~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd  265 (445)
T 2ovr_B          203 RCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWD  265 (445)
T ss_dssp             EEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEE
T ss_pred             EEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEE
Confidence            999996  567999999999999999999999999999999999999  678999999999999954

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.84  E-value=1.7e-19  Score=168.11  Aligned_cols=189  Identities=22%  Similarity=0.280  Sum_probs=153.1

Q ss_pred             ceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEEEeccCCCCE
Q psy4650          46 IEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNI  125 (381)
Q Consensus        46 ~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v  125 (381)
                      +.++++++.||.|++||+..  ...+..+.+|.+.|.++.|  ++.  ++++|+.|+.|++||+.+++.+..+.+|...+
T Consensus       249 ~~~l~~~~~dg~i~iwd~~~--~~~~~~~~~~~~~v~~~~~--~~~--~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v  322 (445)
T 2ovr_B          249 GRRVVSGAYDFMVKVWDPET--ETCLHTLQGHTNRVYSLQF--DGI--HVVSGSLDTSIRVWDVETGNCIHTLTGHQSLT  322 (445)
T ss_dssp             SSCEEEEETTSCEEEEEGGG--TEEEEEECCCSSCEEEEEE--CSS--EEEEEETTSCEEEEETTTCCEEEEECCCCSCE
T ss_pred             CCEEEEEcCCCEEEEEECCC--CcEeEEecCCCCceEEEEE--CCC--EEEEEeCCCeEEEEECCCCCEEEEEcCCcccE
Confidence            45789999999999999863  5667888999999999999  444  79999999999999999999999999999999


Q ss_pred             EEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEec---CCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCceEEEe
Q psy4650         126 SAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTY---GLERVWTISSLKGSNNVAIGYDEGSVLLKVGREEPAVSMD  202 (381)
Q Consensus       126 ~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~---~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~~~~~~~~~~d  202 (381)
                      .++.++  +..+++|+.||.|++||+.+++.+..+..   |...|.+++|+  +.++++|+.||.+++          ||
T Consensus       323 ~~~~~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~i----------wd  388 (445)
T 2ovr_B          323 SGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKL----------WD  388 (445)
T ss_dssp             EEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEE----------EE
T ss_pred             EEEEEe--CCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEE----------EE
Confidence            988774  66999999999999999999999999886   78889999996  579999999999999          77


Q ss_pred             cCCCEEEEEecCceeecccccCCccccccCCceEEeeehHHHH----HhccCCCcCh
Q psy4650         203 VNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSVHVTI----KYRLDISDSH  255 (381)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~d~~----~~~~d~~~~~  255 (381)
                      ..++..+........ ....+....++|+|+|..+++++.++.    ...||+..++
T Consensus       389 ~~~~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~~~  444 (445)
T 2ovr_B          389 LKTGEFIRNLVTLES-GGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDVDM  444 (445)
T ss_dssp             TTTCCEEEEEEECTT-GGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCCCC
T ss_pred             CCCCceeeeeecccc-CCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCCCC
Confidence            777776655421100 011111122578899999999999886    6677776543

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.84  E-value=1.3e-20  Score=175.27  Aligned_cols=192  Identities=12%  Similarity=0.126  Sum_probs=138.3

Q ss_pred             hcceeeeecCCCceEEEEEecCCeEEEecCCCc-----------------------------cceeeEeeccccccEEEE
Q psy4650          34 ETKVDITTNKDMIEYKISYQESSRVKAFNPIQV-----------------------------ATLILKTLYGHEKGVNCV   84 (381)
Q Consensus        34 ~~~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~-----------------------------~~~~~~~l~~h~~~v~~~   84 (381)
                      .....+...+| +.++++++.|++|+  ++...                             ....+.++ +|.+.|.++
T Consensus        16 ~~v~sv~~SpD-G~~iASas~D~TV~--d~~~~~~l~gh~~~v~~V~FsPdg~~~~~~~~~~~~~~~~~~-~~~~~V~~v   91 (588)
T 2j04_A           16 DWKNNLTWARD-GTLYLTTFPDISIG--QPKYAKDINCNSKNLFHVKEFPLEFENKLDFELAQQNGLLNS-QPVCYPRVC   91 (588)
T ss_dssp             SSSCCEEECTT-SCEEEECSSSEEEE--EECCCSCCSSBGGGTEEEEEECCCCCCTTTTSCCCSSCSSTT-SCSCCEEEE
T ss_pred             ccEEEEEECCC-CCEEEEEcCCceee--cccccceecCCCccEEEEEECCCCCcceEEEEeCCCceEeec-CCCCcEEEE
Confidence            45667888887 66899999999995  33211                             11111111 467889999


Q ss_pred             EeeeCCCccEEEEEcCCCeEEEEECCCCeEEEEeccCCC-----CEEEEEEecCCCEEEEEeCCCCEEEEeCCCCe----
Q psy4650          85 DYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQ-----NISAVCFHPELPIVITGSEDGSVRVWHSGTHR----  155 (381)
Q Consensus        85 ~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~-----~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~----  155 (381)
                      +|+|+|.  .||+++.||.|++||..+  ++..+. |..     .|.+++|+|+|++|++|+.||+|++||+.++.    
T Consensus        92 awSPdG~--~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~  166 (588)
T 2j04_A           92 KPSPIDD--WMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTP  166 (588)
T ss_dssp             EECSSSS--CEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCC
T ss_pred             EECCCCC--EEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccc
Confidence            9999888  799999999999999654  666667 665     49999999999999999999999999999885    


Q ss_pred             ---eeEEE----ecCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCceEEEecCCCEEE--EE-ecCceeecccccCC
Q psy4650         156 ---LEISL----TYGLERVWTISSLKGSNNVAIGYDEGSVLLKVGREEPAVSMDVNGCKII--WA-RHSEVQQANLKTMP  225 (381)
Q Consensus       156 ---~~~~~----~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~~~~~~~~~~d~~~~~~~--~~-~~~~~~~~~~~~~~  225 (381)
                         .+.++    .+|...|.+++|+|+|  +++++.|+.+++          ||..++...  +. +.. .+...+.+  
T Consensus       167 ~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrl----------Wd~~~~~~~~~~~tL~~-~h~~~V~s--  231 (588)
T 2j04_A          167 EFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFS----------MTVSASSHQPVSRMIQN-ASRRKITD--  231 (588)
T ss_dssp             CCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEE----------ECCCSSSSCCCEEEEEC-CCSSCCCC--
T ss_pred             cceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEE----------EECCCCccccceeeecc-cccCcEEE--
Confidence               35666    5577899999999999  888999999999          555444410  11 100 01111111  


Q ss_pred             ccccccCCceEEeeehHHHHHhccCCCcC
Q psy4650         226 EVFENITAGVVLTLSVHVTIKYRLDISDS  254 (381)
Q Consensus       226 ~~~~~~~dg~~l~~~~~d~~~~~~d~~~~  254 (381)
                        ++|+  |..+++++ ++.++.|++...
T Consensus       232 --vaFs--g~~LASa~-~~tIkLWd~~~~  255 (588)
T 2j04_A          232 --LKIV--DYKVVLTC-PGYVHKIDLKNY  255 (588)
T ss_dssp             --EEEE--TTEEEEEC-SSEEEEEETTTT
T ss_pred             --EEEE--CCEEEEEe-CCeEEEEECCCC
Confidence              4455  46777766 477888887643

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.84  E-value=1.5e-19  Score=168.00  Aligned_cols=180  Identities=16%  Similarity=0.240  Sum_probs=146.2

Q ss_pred             ceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEEEeccCCCCE
Q psy4650          46 IEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNI  125 (381)
Q Consensus        46 ~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v  125 (381)
                      +.++++|+.||+|++||...  ......+.+|.+.|.++.|  ++.  ++++|+.||+|++||+.+++.+..+.+|...|
T Consensus       143 ~~~l~~g~~dg~i~iwd~~~--~~~~~~~~~h~~~v~~l~~--~~~--~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v  216 (435)
T 1p22_A          143 DQKIVSGLRDNTIKIWDKNT--LECKRILTGHTGSVLCLQY--DER--VIITGSSDSTVRVWDVNTGEMLNTLIHHCEAV  216 (435)
T ss_dssp             SSEEEEEESSSCEEEEESSS--CCEEEEECCCSSCEEEEEC--CSS--EEEEEETTSCEEEEESSSCCEEEEECCCCSCE
T ss_pred             CCEEEEEeCCCeEEEEeCCC--CeEEEEEcCCCCcEEEEEE--CCC--EEEEEcCCCeEEEEECCCCcEEEEEcCCCCcE
Confidence            56899999999999999864  4567889999999999999  444  89999999999999999999999999999999


Q ss_pred             EEEEEecCCCEEEEEeCCCCEEEEeCCCCeee---EEEecCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCceEEEe
Q psy4650         126 SAVCFHPELPIVITGSEDGSVRVWHSGTHRLE---ISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKVGREEPAVSMD  202 (381)
Q Consensus       126 ~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~---~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~~~~~~~~~~d  202 (381)
                      .+++|++  ..+++|+.|+.|++||+.++...   ..+.+|...|.++.|  ++.++++|+.||.+++          ||
T Consensus       217 ~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~v----------wd  282 (435)
T 1p22_A          217 LHLRFNN--GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKV----------WN  282 (435)
T ss_dssp             EEEECCT--TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEE----------EE
T ss_pred             EEEEEcC--CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEE----------EE
Confidence            9999974  59999999999999999987765   667789999999999  6789999999999999          66


Q ss_pred             cCCCEEEEEecCceeecccccCCccccccCCceEEeeehHHHHHhccCCCc
Q psy4650         203 VNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSVHVTIKYRLDISD  253 (381)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~d~~~~~~d~~~  253 (381)
                      ..++..+.....+..  .+..      ...++..+++++.++..+.||+..
T Consensus       283 ~~~~~~~~~~~~~~~--~v~~------~~~~~~~l~~g~~dg~i~iwd~~~  325 (435)
T 1p22_A          283 TSTCEFVRTLNGHKR--GIAC------LQYRDRLVVSGSSDNTIRLWDIEC  325 (435)
T ss_dssp             TTTCCEEEEEECCSS--CEEE------EEEETTEEEEEETTSCEEEEETTT
T ss_pred             CCcCcEEEEEcCCCC--cEEE------EEeCCCEEEEEeCCCeEEEEECCC
Confidence            666655544432211  1111      112566777888887788887754

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.84  E-value=1.6e-19  Score=163.05  Aligned_cols=126  Identities=17%  Similarity=0.247  Sum_probs=111.1

Q ss_pred             ceeeEeeccccccEEEEEeeeCC-CccEEEEEcCCCeEEEEECCC-CeEE-EEeccCCCCEEEEEEecCCCEEEEEeCCC
Q psy4650          68 TLILKTLYGHEKGVNCVDYYHGG-DKPYLISGADDRLVKIWDYQN-KTCV-QTLEGHGQNISAVCFHPELPIVITGSEDG  144 (381)
Q Consensus        68 ~~~~~~l~~h~~~v~~~~~~~~~-~~~~l~s~~~d~~v~vwd~~~-~~~~-~~~~~~~~~v~~~~~~p~~~~l~s~~~d~  144 (381)
                      ...+..+.+|.+.|.+++|+|++ ...+|++|+.||.|++||+.+ +... ..+.+|...|.+++|+|++.++++++.|+
T Consensus        29 ~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg  108 (368)
T 3mmy_A           29 MKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDK  108 (368)
T ss_dssp             TCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTS
T ss_pred             cceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCC
Confidence            44567789999999999999974 013899999999999999987 5444 77889999999999999999999999999


Q ss_pred             CEEEEeCCCCeeeEEEecCCcceEEEEE--cCCCCEEEEEeCCCeEEEEecC
Q psy4650         145 SVRVWHSGTHRLEISLTYGLERVWTISS--LKGSNNVAIGYDEGSVLLKVGR  194 (381)
Q Consensus       145 ~i~vwd~~~~~~~~~~~~~~~~v~~v~~--~~~~~~l~~~~~dg~v~i~~~~  194 (381)
                      .|++||+.+++... +..|...|.+++|  +|++.++++++.||.+++|+..
T Consensus       109 ~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~  159 (368)
T 3mmy_A          109 TAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTR  159 (368)
T ss_dssp             EEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSS
T ss_pred             cEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECC
Confidence            99999999998766 5568899999999  8999999999999999999843

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.84  E-value=1.1e-19  Score=175.91  Aligned_cols=202  Identities=13%  Similarity=0.081  Sum_probs=162.8

Q ss_pred             hcceeeeecCCCceEEEEEecCCeEEEecCCCcc--ceeeEeecccccc-EEEEEeee--CCCccEEEEEcCCCeEEEEE
Q psy4650          34 ETKVDITTNKDMIEYKISYQESSRVKAFNPIQVA--TLILKTLYGHEKG-VNCVDYYH--GGDKPYLISGADDRLVKIWD  108 (381)
Q Consensus        34 ~~~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~--~~~~~~l~~h~~~-v~~~~~~~--~~~~~~l~s~~~d~~v~vwd  108 (381)
                      .....+...+++ .++++++ ++.+++|++....  ......+.+|.+. |.+++|+|  ++.  +|++|+.||+|++||
T Consensus        19 ~~v~~~~~spdg-~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~--~l~s~~~dg~v~vw~   94 (615)
T 1pgu_A           19 NFTTHLSYDPTT-NAIAYPC-GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQ--YLCSGDESGKVIVWG   94 (615)
T ss_dssp             TCCCCCEEETTT-TEEEEEE-TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCC--EEEEEETTSEEEEEE
T ss_pred             CceeEEEECCCC-CEEEEec-CCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCC--EEEEecCCCEEEEEe
Confidence            334566677764 4666666 7899999997420  0567889999999 99999999  877  899999999999999


Q ss_pred             CCCC--------eEEEEeccCCCCEEEEEEecCCCEEEEEeCC----CCEEEEeCCCCeeeEEEecCCcceEEEEEcCCC
Q psy4650         109 YQNK--------TCVQTLEGHGQNISAVCFHPELPIVITGSED----GSVRVWHSGTHRLEISLTYGLERVWTISSLKGS  176 (381)
Q Consensus       109 ~~~~--------~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d----~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~  176 (381)
                      +.++        .....+..|..+|.+++|+|++..+++++.+    +.|++||  .++....+.+|...|.+++|+|++
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~v~~~~~~~~~  172 (615)
T 1pgu_A           95 WTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQRINACHLKQSR  172 (615)
T ss_dssp             EEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEEECCSCSSCEEEEEECSSS
T ss_pred             CCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcceeeecCCccEEEEEECCCC
Confidence            9754        6677888899999999999999999999987    6888888  677888889999999999999999


Q ss_pred             C-EEEEEeCCCeEEEEecCCCceEEEecCCCEEEEEecCceeecccccCCccccccCC-ceEEeeehHHHHHhccCCCcC
Q psy4650         177 N-NVAIGYDEGSVLLKVGREEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITA-GVVLTLSVHVTIKYRLDISDS  254 (381)
Q Consensus       177 ~-~l~~~~~dg~v~i~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-g~~l~~~~~d~~~~~~d~~~~  254 (381)
                      . .+++++.||.+++          ||..++..+.....+....  ... ..++|+|+ |..+++++.++..+.|++...
T Consensus       173 ~~~l~~~~~d~~v~v----------wd~~~~~~~~~~~~~~~~~--~~v-~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~  239 (615)
T 1pgu_A          173 PMRSMTVGDDGSVVF----------YQGPPFKFSASDRTHHKQG--SFV-RDVEFSPDSGEFVITVGSDRKISCFDGKSG  239 (615)
T ss_dssp             SCEEEEEETTTEEEE----------EETTTBEEEEEECSSSCTT--CCE-EEEEECSTTCCEEEEEETTCCEEEEETTTC
T ss_pred             CcEEEEEeCCCcEEE----------EeCCCcceeeeecccCCCC--ceE-EEEEECCCCCCEEEEEeCCCeEEEEECCCC
Confidence            8 8999999999999          7777777766554322100  011 11578899 999999999999999997643

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.83  E-value=4.2e-20  Score=165.54  Aligned_cols=199  Identities=12%  Similarity=0.031  Sum_probs=152.8

Q ss_pred             cceeeeecCCCceEEEEEecCCeEEEecCCCcc-ceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEEC-CCC
Q psy4650          35 TKVDITTNKDMIEYKISYQESSRVKAFNPIQVA-TLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDY-QNK  112 (381)
Q Consensus        35 ~~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~-~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~-~~~  112 (381)
                      ....+.+.++ +.++++++.|+.|++|++.... ......+.+|...|.+++|+|++.. +|++|+.||.|++||+ .++
T Consensus        13 ~v~~~~~s~~-~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~dg~i~~wd~~~~~   90 (342)
T 1yfq_A           13 YISDIKIIPS-KSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDL-QIYVGTVQGEILKVDLIGSP   90 (342)
T ss_dssp             CEEEEEEEGG-GTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSE-EEEEEETTSCEEEECSSSSS
T ss_pred             cEEEEEEcCC-CCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCc-EEEEEcCCCeEEEEEeccCC
Confidence            3456666665 5689999999999999986533 1234566699999999999997531 6999999999999999 877


Q ss_pred             eEEEEecc--CCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCC---------CeeeEEEecCCcceEEEEEcCCCCEEEE
Q psy4650         113 TCVQTLEG--HGQNISAVCFHPELPIVITGSEDGSVRVWHSGT---------HRLEISLTYGLERVWTISSLKGSNNVAI  181 (381)
Q Consensus       113 ~~~~~~~~--~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~---------~~~~~~~~~~~~~v~~v~~~~~~~~l~~  181 (381)
                      .. ..+.+  |...|.+++|+| +..+++++.|+.|++||+++         ++.+..+. +...+.+++|+|++  +++
T Consensus        91 ~~-~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~--l~~  165 (342)
T 1yfq_A           91 SF-QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNSSR--LIV  165 (342)
T ss_dssp             SE-EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECSSE--EEE
T ss_pred             ce-EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEecCCc--EEE
Confidence            64 77888  999999999999 99999999999999999987         66666666 78899999999987  999


Q ss_pred             EeCCCeEEEEecCCCceEEEecCC-CEEEEEecCceeecccccCCccccccC-CceEEeeehHHHHHhccCCCcC
Q psy4650         182 GYDEGSVLLKVGREEPAVSMDVNG-CKIIWARHSEVQQANLKTMPEVFENIT-AGVVLTLSVHVTIKYRLDISDS  254 (381)
Q Consensus       182 ~~~dg~v~i~~~~~~~~~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-dg~~l~~~~~d~~~~~~d~~~~  254 (381)
                      ++.||.+++          ||..+ +.........    ........+.++| ++..+++++.++....|++...
T Consensus       166 ~~~d~~i~i----------~d~~~~~~~~~~~~~~----~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~  226 (342)
T 1yfq_A          166 GMNNSQVQW----------FRLPLCEDDNGTIEES----GLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQ  226 (342)
T ss_dssp             EESTTEEEE----------EESSCCTTCCCEEEEC----SCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTT
T ss_pred             EeCCCeEEE----------EECCccccccceeeec----CCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCC
Confidence            999999999          55544 2111000000    0011111257789 9999999999998888887543

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.83  E-value=1.1e-18  Score=162.97  Aligned_cols=153  Identities=18%  Similarity=0.190  Sum_probs=130.9

Q ss_pred             ceeeeecCCCceEEEEEecCCeEEEecCCCccce--eeEeeccccccEEEEEeeeC---CCccEEEEEcCCCeEEEEECC
Q psy4650          36 KVDITTNKDMIEYKISYQESSRVKAFNPIQVATL--ILKTLYGHEKGVNCVDYYHG---GDKPYLISGADDRLVKIWDYQ  110 (381)
Q Consensus        36 ~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~--~~~~l~~h~~~v~~~~~~~~---~~~~~l~s~~~d~~v~vwd~~  110 (381)
                      ...+.+.++ +.++++++.+|.+++|++......  ....+.+|.+.|.+++|+|+   +.  +|++|+.|++|++||+.
T Consensus       152 v~~~~~sp~-~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~--~l~s~~~d~~i~vwd~~  228 (450)
T 2vdu_B          152 PNAISIAED-DTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQ--FIITSDRDEHIKISHYP  228 (450)
T ss_dssp             EEEEEECTT-SSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCE--EEEEEETTSCEEEEEES
T ss_pred             ceEEEEcCC-CCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCc--EEEEEcCCCcEEEEECC
Confidence            356667776 568899999999999998653322  34477899999999999998   54  89999999999999999


Q ss_pred             CCeEEEE-eccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEec-------------------------CC
Q psy4650         111 NKTCVQT-LEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTY-------------------------GL  164 (381)
Q Consensus       111 ~~~~~~~-~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~-------------------------~~  164 (381)
                      ++..+.. +.+|.+.|.+++|+ ++.++++|+.|+.|++||+.+++.+..+..                         ..
T Consensus       229 ~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (450)
T 2vdu_B          229 QCFIVDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIE  307 (450)
T ss_dssp             CTTCEEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBC
T ss_pred             CCceeeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccce
Confidence            9887777 56899999999999 999999999999999999999998888763                         23


Q ss_pred             cceEEEEEcCCCCEEEEEe-CCCeEEEEe
Q psy4650         165 ERVWTISSLKGSNNVAIGY-DEGSVLLKV  192 (381)
Q Consensus       165 ~~v~~v~~~~~~~~l~~~~-~dg~v~i~~  192 (381)
                      ..+.+++|+|+++++++++ .++.+++|.
T Consensus       308 ~~v~~i~~~~~~~~l~~~~~~d~~i~iw~  336 (450)
T 2vdu_B          308 FAVSKIIKSKNLPFVAFFVEATKCIIILE  336 (450)
T ss_dssp             CCEEEEEECSSSSEEEEEETTCSEEEEEE
T ss_pred             EEEEEEEEeCCCCEEEEEECCCCeEEEEE
Confidence            5689999999999999999 899999944

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.83  E-value=3.6e-19  Score=165.34  Aligned_cols=179  Identities=16%  Similarity=0.244  Sum_probs=150.5

Q ss_pred             ceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEE---EEeccCC
Q psy4650          46 IEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCV---QTLEGHG  122 (381)
Q Consensus        46 ~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~---~~~~~~~  122 (381)
                      +.++++|+.||+|++||+..  ...+..+.+|.+.|.++.|++  .  .+++|+.|++|++||+.++...   ..+.+|.
T Consensus       183 ~~~l~sg~~dg~i~vwd~~~--~~~~~~~~~h~~~v~~l~~~~--~--~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~  256 (435)
T 1p22_A          183 ERVIITGSSDSTVRVWDVNT--GEMLNTLIHHCEAVLHLRFNN--G--MMVTCSKDRSIAVWDMASPTDITLRRVLVGHR  256 (435)
T ss_dssp             SSEEEEEETTSCEEEEESSS--CCEEEEECCCCSCEEEEECCT--T--EEEEEETTSCEEEEECSSSSCCEEEEEECCCS
T ss_pred             CCEEEEEcCCCeEEEEECCC--CcEEEEEcCCCCcEEEEEEcC--C--EEEEeeCCCcEEEEeCCCCCCceeeeEecCCC
Confidence            56899999999999999974  456788999999999999964  3  7999999999999999887644   6778999


Q ss_pred             CCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCceEEEe
Q psy4650         123 QNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKVGREEPAVSMD  202 (381)
Q Consensus       123 ~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~~~~~~~~~~d  202 (381)
                      ..|.+++|  ++..+++|+.|+.|++||+.+++.+..+.+|...+.++.++  +..+++|+.||.+++          ||
T Consensus       257 ~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~g~~dg~i~i----------wd  322 (435)
T 1p22_A          257 AAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRL----------WD  322 (435)
T ss_dssp             SCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEE----------EE
T ss_pred             CcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEeC--CCEEEEEeCCCeEEE----------EE
Confidence            99999999  67899999999999999999999999999999999999994  679999999999999          77


Q ss_pred             cCCCEEEEEecCceeecccccCCccccccCCceEEeeehHHHHHhccCCC
Q psy4650         203 VNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSVHVTIKYRLDIS  252 (381)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~d~~~~~~d~~  252 (381)
                      ..++..+.....+..  .+..    +.+  ++..+++++.++....||+.
T Consensus       323 ~~~~~~~~~~~~h~~--~v~~----~~~--~~~~l~sg~~dg~i~vwd~~  364 (435)
T 1p22_A          323 IECGACLRVLEGHEE--LVRC----IRF--DNKRIVSGAYDGKIKVWDLV  364 (435)
T ss_dssp             TTTCCEEEEECCCSS--CEEE----EEC--CSSEEEEEETTSCEEEEEHH
T ss_pred             CCCCCEEEEEeCCcC--cEEE----EEe--cCCEEEEEeCCCcEEEEECC
Confidence            777776655543211  1111    122  78899999999999999874

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.83  E-value=9.6e-20  Score=163.20  Aligned_cols=199  Identities=12%  Similarity=0.038  Sum_probs=151.6

Q ss_pred             ceeeeecCCCce-EEEEEecCCeEEEecC-CCccceeeEeecc--ccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCC
Q psy4650          36 KVDITTNKDMIE-YKISYQESSRVKAFNP-IQVATLILKTLYG--HEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQN  111 (381)
Q Consensus        36 ~~~i~~~~~~~~-~~~s~~~d~~v~i~~~-~~~~~~~~~~l~~--h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~  111 (381)
                      ...+.+.++ +. ++++++.||.|++|++ ...   ....+.+  |...|.+++|+| +.  ++++++.|+.|++||+.+
T Consensus        59 v~~~~~~~~-~~~~l~~~~~dg~i~~wd~~~~~---~~~~~~~~~~~~~v~~l~~~~-~~--~l~s~~~d~~i~iwd~~~  131 (342)
T 1yfq_A           59 LLCCNFIDN-TDLQIYVGTVQGEILKVDLIGSP---SFQALTNNEANLGICRICKYG-DD--KLIAASWDGLIEVIDPRN  131 (342)
T ss_dssp             EEEEEEEES-SSEEEEEEETTSCEEEECSSSSS---SEEECBSCCCCSCEEEEEEET-TT--EEEEEETTSEEEEECHHH
T ss_pred             eEEEEECCC-CCcEEEEEcCCCeEEEEEeccCC---ceEeccccCCCCceEEEEeCC-CC--EEEEEcCCCeEEEEcccc
Confidence            345556665 66 8999999999999998 643   2367788  999999999999 55  899999999999999987


Q ss_pred             ---------CeEEEEeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCC-Cee--eEEEecCCcceEEEEEcC-CCCE
Q psy4650         112 ---------KTCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGT-HRL--EISLTYGLERVWTISSLK-GSNN  178 (381)
Q Consensus       112 ---------~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~-~~~--~~~~~~~~~~v~~v~~~~-~~~~  178 (381)
                               ++++..+. |...|.+++|+|++  +++++.|+.|++||+++ +..  ......+...+.+++|+| ++.+
T Consensus       132 ~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~  208 (342)
T 1yfq_A          132 YGDGVIAVKNLNSNNTK-VKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEG  208 (342)
T ss_dssp             HTTBCEEEEESCSSSSS-SCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCE
T ss_pred             cccccccccCCeeeEEe-eCCceEEEEecCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCE
Confidence                     66666666 88999999999987  99999999999999998 543  334455778999999999 9999


Q ss_pred             EEEEeCCCeEEEEecCCCceEEEecCCC------EEEEEecCceeecc---cccCCccccccCCceEEeeehHHHHHhcc
Q psy4650         179 VAIGYDEGSVLLKVGREEPAVSMDVNGC------KIIWARHSEVQQAN---LKTMPEVFENITAGVVLTLSVHVTIKYRL  249 (381)
Q Consensus       179 l~~~~~dg~v~i~~~~~~~~~~~d~~~~------~~~~~~~~~~~~~~---~~~~~~~~~~~~dg~~l~~~~~d~~~~~~  249 (381)
                      +++++.||.+++|.          .+..      ........+.....   .......++|+|++..+++++.++..+.|
T Consensus       209 l~~~~~dg~i~i~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw  278 (342)
T 1yfq_A          209 YACSSIDGRVAVEF----------FDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCW  278 (342)
T ss_dssp             EEEEETTSEEEEEE----------CCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEE
T ss_pred             EEEEecCCcEEEEE----------EcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEE
Confidence            99999999999955          3222      22222211111000   00011125788999999999999999999


Q ss_pred             CCCcC
Q psy4650         250 DISDS  254 (381)
Q Consensus       250 d~~~~  254 (381)
                      ++...
T Consensus       279 d~~~~  283 (342)
T 1yfq_A          279 NLQTR  283 (342)
T ss_dssp             ETTTT
T ss_pred             cCccH
Confidence            98643

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.82  E-value=3e-19  Score=178.74  Aligned_cols=166  Identities=15%  Similarity=0.162  Sum_probs=142.5

Q ss_pred             eeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEEEeccCCCCEEEEEEecCCCEEEEEeCCCCEEEE
Q psy4650          70 ILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVW  149 (381)
Q Consensus        70 ~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vw  149 (381)
                      ..+.+.+|.+.|.+++|+|++.  ++++|+.||.|++||+.++..+..+.+|.++|.+++|+|++..+++|+.||.|++|
T Consensus         5 ~~~~~~~h~~~v~~i~~sp~~~--~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw   82 (814)
T 3mkq_A            5 IKKTFSNRSDRVKGIDFHPTEP--WVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVF   82 (814)
T ss_dssp             CEEEEEEECSCEEEEEECSSSS--EEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEE
T ss_pred             cceeeecCCCceEEEEECCCCC--EEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEE
Confidence            4577889999999999999876  89999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCceEEEecCCC-EEEEEecCceeecccccCCccc
Q psy4650         150 HSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKVGREEPAVSMDVNGC-KIIWARHSEVQQANLKTMPEVF  228 (381)
Q Consensus       150 d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~~~~~~~~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~  228 (381)
                      |+.+++....+.+|...|.+++|+|+++++++++.||.+++          ||..++ ........+.      .....+
T Consensus        83 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v----------w~~~~~~~~~~~~~~~~------~~v~~~  146 (814)
T 3mkq_A           83 NYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKL----------WNWENNWALEQTFEGHE------HFVMCV  146 (814)
T ss_dssp             ETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEE----------EEGGGTSEEEEEEECCS------SCEEEE
T ss_pred             ECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEE----------EECCCCceEEEEEcCCC------CcEEEE
Confidence            99999999999999999999999999999999999999999          555444 3222222111      001115


Q ss_pred             cccC-CceEEeeehHHHHHhccCCCc
Q psy4650         229 ENIT-AGVVLTLSVHVTIKYRLDISD  253 (381)
Q Consensus       229 ~~~~-dg~~l~~~~~d~~~~~~d~~~  253 (381)
                      .|+| ++..+++++.++....|++..
T Consensus       147 ~~~p~~~~~l~~~~~dg~v~vwd~~~  172 (814)
T 3mkq_A          147 AFNPKDPSTFASGCLDRTVKVWSLGQ  172 (814)
T ss_dssp             EEETTEEEEEEEEETTSEEEEEETTC
T ss_pred             EEEcCCCCEEEEEeCCCeEEEEECCC
Confidence            6788 899999999999999998754

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.81  E-value=6.7e-18  Score=156.09  Aligned_cols=152  Identities=18%  Similarity=0.289  Sum_probs=129.5

Q ss_pred             eeeeecCCCceEEEEEecCCeEEEecCCCcc--ceeeEeeccccccEEEEEeeeCCCccEEEE--EcCCCeEEEEECCCC
Q psy4650          37 VDITTNKDMIEYKISYQESSRVKAFNPIQVA--TLILKTLYGHEKGVNCVDYYHGGDKPYLIS--GADDRLVKIWDYQNK  112 (381)
Q Consensus        37 ~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~--~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s--~~~d~~v~vwd~~~~  112 (381)
                      +.+...++ +.++++++.|+.+++|+.....  ...+....+|.+.|.+++|+|.+.. ++++  |+.|++|++||+.++
T Consensus       234 ~~~~~~~~-g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~-~la~~~gs~D~~I~iwd~~t~  311 (420)
T 4gga_A          234 CGLRWAPD-GRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSN-VLATGGGTSDRHIRIWNVCSG  311 (420)
T ss_dssp             EEEEECTT-SSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTT-EEEEEECTTTCEEEEEETTTT
T ss_pred             eeeeecCC-CCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCccc-EEEEEeecCCCEEEEEeCCcc
Confidence            33444444 5689999999999999986432  2346677899999999999997764 5554  568999999999999


Q ss_pred             eEEEEeccCCCCEEEEEEecCCCEEEEEe--CCCCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCCCeEEE
Q psy4650         113 TCVQTLEGHGQNISAVCFHPELPIVITGS--EDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLL  190 (381)
Q Consensus       113 ~~~~~~~~~~~~v~~~~~~p~~~~l~s~~--~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i  190 (381)
                      .+...+..| ..+.++.|+|++..+++++  .|+.|++||+.+++.+..+.+|.+.|++++|+|+|.+|++|+.||+|++
T Consensus       312 ~~~~~~~~~-~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvri  390 (420)
T 4gga_A          312 ACLSAVDAH-SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRL  390 (420)
T ss_dssp             EEEEEEECS-SCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEE
T ss_pred             ccceeeccc-cceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEE
Confidence            998888755 5789999999999877664  6999999999999999999999999999999999999999999999999


Q ss_pred             E
Q psy4650         191 K  191 (381)
Q Consensus       191 ~  191 (381)
                      |
T Consensus       391 W  391 (420)
T 4gga_A          391 W  391 (420)
T ss_dssp             E
T ss_pred             E
Confidence            4

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.80  E-value=1.6e-18  Score=156.66  Aligned_cols=199  Identities=13%  Similarity=0.139  Sum_probs=146.6

Q ss_pred             hcceeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCe
Q psy4650          34 ETKVDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKT  113 (381)
Q Consensus        34 ~~~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~  113 (381)
                      ....++.+++++ .++++|+.+ .+++|+....  .....  .+...+..+.+.++++. .+++++.|++|++||..+++
T Consensus        20 ~~V~~v~fs~dg-~~la~g~~~-~~~iw~~~~~--~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~d~~v~iWd~~~~~   92 (355)
T 3vu4_A           20 NPVTDYEFNQDQ-SCLILSTLK-SFEIYNVHPV--AHIMS--QEMRHLSKVRMLHRTNY-VAFVTGVKEVVHIWDDVKKQ   92 (355)
T ss_dssp             CCCCEEEECTTS-SEEEEECSS-EEEEEEETTE--EEEEE--EECSCCCEEEECTTSSE-EEEECSSTTEEEEEETTTTE
T ss_pred             CceEEEEECCCC-CEEEEEcCC-EEEEEecCCc--ceeee--eecCCeEEEEEcCCCCE-EEEEECCccEEEEEECCCCc
Confidence            344577788874 578887766 5789997642  22222  22235777888876662 34678889999999999999


Q ss_pred             EEEEeccCCCCEEEEEEecCC-----------------------------------CEEEE--EeCCCCEEEEeCCCCe-
Q psy4650         114 CVQTLEGHGQNISAVCFHPEL-----------------------------------PIVIT--GSEDGSVRVWHSGTHR-  155 (381)
Q Consensus       114 ~~~~~~~~~~~v~~~~~~p~~-----------------------------------~~l~s--~~~d~~i~vwd~~~~~-  155 (381)
                      .+..+. |...|.+++|+++.                                   ..++.  |+.||.|++||+.++. 
T Consensus        93 ~~~~~~-~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~s~~~la~~sg~~~g~v~iwd~~~~~~  171 (355)
T 3vu4_A           93 DVSRIK-VDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIRFGGVCEFSNGLLVYSNEFNLGQIHITKLQSSGS  171 (355)
T ss_dssp             EEEEEE-CSSCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEEEEEEEEEETTEEEEEESSCTTCEEEEECCC---
T ss_pred             EEEEEE-CCCceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEeccCCceEEEEccEEEEeCCCcCcEEEEEECCCCCc
Confidence            888887 66688888887653                                   23333  5679999999998765 


Q ss_pred             ---------------eeEEEecCCcceEEEEEcCCCCEEEEEeCCCe-EEEEecCCCceEEEecCCCEEEEEecCceeec
Q psy4650         156 ---------------LEISLTYGLERVWTISSLKGSNNVAIGYDEGS-VLLKVGREEPAVSMDVNGCKIIWARHSEVQQA  219 (381)
Q Consensus       156 ---------------~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~-v~i~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  219 (381)
                                     ....+.+|...|.+++|+|+|.+|++|+.||. +++          ||..++..+.......+..
T Consensus       172 ~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~i----------wd~~~~~~~~~~~~g~h~~  241 (355)
T 3vu4_A          172 ATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRV----------FKTEDGVLVREFRRGLDRA  241 (355)
T ss_dssp             ---------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEE----------EETTTCCEEEEEECTTCCS
T ss_pred             cccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEE----------EECCCCcEEEEEEcCCCCC
Confidence                           26778899999999999999999999999998 999          7887777666554210111


Q ss_pred             ccccCCccccccCCceEEeeehHHHHHhccCCCcC
Q psy4650         220 NLKTMPEVFENITAGVVLTLSVHVTIKYRLDISDS  254 (381)
Q Consensus       220 ~~~~~~~~~~~~~dg~~l~~~~~d~~~~~~d~~~~  254 (381)
                      .+    ..++|+|||.++++++.++..+.|++...
T Consensus       242 ~v----~~~~~s~~~~~l~s~s~d~~v~iw~~~~~  272 (355)
T 3vu4_A          242 DV----VDMKWSTDGSKLAVVSDKWTLHVFEIFND  272 (355)
T ss_dssp             CE----EEEEECTTSCEEEEEETTCEEEEEESSCC
T ss_pred             cE----EEEEECCCCCEEEEEECCCEEEEEEccCC
Confidence            11    12578999999999999999999998654

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.80  E-value=5.2e-19  Score=162.07  Aligned_cols=211  Identities=9%  Similarity=0.044  Sum_probs=138.4

Q ss_pred             hcceeeeec---CCCceEEEEEecCCeEEEecCCCccc-----eeeE--eeccccccEEEEEeeeCC-------------
Q psy4650          34 ETKVDITTN---KDMIEYKISYQESSRVKAFNPIQVAT-----LILK--TLYGHEKGVNCVDYYHGG-------------   90 (381)
Q Consensus        34 ~~~~~i~~~---~~~~~~~~s~~~d~~v~i~~~~~~~~-----~~~~--~l~~h~~~v~~~~~~~~~-------------   90 (381)
                      ..||.+...   +.... +++++.++.|++|++.....     ....  ....|...+..+.|++..             
T Consensus        16 ~~p~~~~w~~~~~~~~~-l~a~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (393)
T 4gq1_A           16 VRPYTTTWCSQSPSCSN-LLAIGHDTGITIYCASEEQTPGSTGLTLQELFTIQTGLPTLHLSFSSSCSYSENLHDGDGNV   94 (393)
T ss_dssp             CCEEEEEECTTSGGGTT-EEEEEESSEEEEEEEEECCSSSCCSEEEEEEEEEECSSCEEEEEECTTCEEECC--------
T ss_pred             CCCeEEEEeCCCCCCCC-EEEEECCCCEEEEECCCCCcccccccceeeeEEEecCCCeeeEeecCCccccccccCCCcce
Confidence            456666653   23233 45556688899997632110     0001  111233444444443210             


Q ss_pred             -----CccEEEEEcCCCeEEEEECCCCeEE-----EEeccCCCCEEEEEEec--------CCCEEEEEeCCCCEEEEeCC
Q psy4650          91 -----DKPYLISGADDRLVKIWDYQNKTCV-----QTLEGHGQNISAVCFHP--------ELPIVITGSEDGSVRVWHSG  152 (381)
Q Consensus        91 -----~~~~l~s~~~d~~v~vwd~~~~~~~-----~~~~~~~~~v~~~~~~p--------~~~~l~s~~~d~~i~vwd~~  152 (381)
                           ...++++|+.|++|++||..++...     ..+.+|.+.|.+++|+|        ++.+|++|+.|++|+|||+.
T Consensus        95 ~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~  174 (393)
T 4gq1_A           95 NSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLT  174 (393)
T ss_dssp             --CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEE
T ss_pred             eecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECC
Confidence                 1237999999999999999988543     34688999999999998        78899999999999999999


Q ss_pred             CCeeeEEEecCCcceEEEEEcCCCC-EEEEEeCCCeEEEEecCCCceEEEecCCCEEEEEecCc----------------
Q psy4650         153 THRLEISLTYGLERVWTISSLKGSN-NVAIGYDEGSVLLKVGREEPAVSMDVNGCKIIWARHSE----------------  215 (381)
Q Consensus       153 ~~~~~~~~~~~~~~v~~v~~~~~~~-~l~~~~~dg~v~i~~~~~~~~~~~d~~~~~~~~~~~~~----------------  215 (381)
                      ++.....+..|...+.+++|+|++. ++++|+.||.+++|          |..++.........                
T Consensus       175 ~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~w----------d~~t~~~~~~~~~~~~~~~~~~~s~~~~~~  244 (393)
T 4gq1_A          175 DEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIF----------DWTLNLSAEENSQTELVKNPWLLTLNTLPL  244 (393)
T ss_dssp             TTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEE----------ETTCCC----------CSCCCSEEEESGGG
T ss_pred             CCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEE----------ECCCCcccccccccCCcccceEEecccccc
Confidence            9988888888999999999999874 79999999999995          44443322211100                


Q ss_pred             eeecccccCCc---cccc-cCCceEEeeehHHHHHhccCCCcCh
Q psy4650         216 VQQANLKTMPE---VFEN-ITAGVVLTLSVHVTIKYRLDISDSH  255 (381)
Q Consensus       216 ~~~~~~~~~~~---~~~~-~~dg~~l~~~~~d~~~~~~d~~~~~  255 (381)
                      .......++..   .+.| .+||..++.+..++....|++...+
T Consensus       245 ~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~  288 (393)
T 4gq1_A          245 VNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANN  288 (393)
T ss_dssp             C------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC----
T ss_pred             eeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCC
Confidence            00000111111   1233 3899999999999999999986543

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.79  E-value=2.6e-17  Score=150.38  Aligned_cols=185  Identities=11%  Similarity=0.098  Sum_probs=147.1

Q ss_pred             eEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEEEeccCCCCEE
Q psy4650          47 EYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNIS  126 (381)
Q Consensus        47 ~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~  126 (381)
                      .++++++.++.|++||+..  ...+..+.+|. .+.+++|+|++.. ++++++.|++|++||..+++.+..+..+. .+.
T Consensus         3 ~l~vs~~~d~~v~v~d~~~--~~~~~~~~~~~-~~~~~~~s~dg~~-l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~   77 (391)
T 1l0q_A            3 FAYIANSESDNISVIDVTS--NKVTATIPVGS-NPMGAVISPDGTK-VYVANAHSNDVSIIDTATNNVIATVPAGS-SPQ   77 (391)
T ss_dssp             EEEEEETTTTEEEEEETTT--TEEEEEEECSS-SEEEEEECTTSSE-EEEEEGGGTEEEEEETTTTEEEEEEECSS-SEE
T ss_pred             EEEEEcCCCCEEEEEECCC--CeEEEEeecCC-CcceEEECCCCCE-EEEECCCCCeEEEEECCCCeEEEEEECCC-Ccc
Confidence            4678899999999999974  45666777665 5899999998872 44788899999999999999988887655 899


Q ss_pred             EEEEecCCCEEEE-EeCCCCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEE-EEEeCCCeEEEEecCCCceEEEecC
Q psy4650         127 AVCFHPELPIVIT-GSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNV-AIGYDEGSVLLKVGREEPAVSMDVN  204 (381)
Q Consensus       127 ~~~~~p~~~~l~s-~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l-~~~~~dg~v~i~~~~~~~~~~~d~~  204 (381)
                      +++|+|+++.++. ++.++.|++||+.+++.+..+..+ ..+.+++|+|+++.+ ++++.++.+++          ||..
T Consensus        78 ~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~----------~d~~  146 (391)
T 1l0q_A           78 GVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSV----------INTV  146 (391)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEE----------EETT
T ss_pred             ceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECCCCCEEEEEeCCCCEEEE----------EECC
Confidence            9999999997754 456799999999999988887754 578999999999977 67778999998          8887


Q ss_pred             CCEEEEEecCceeecccccCCccccccCCceEE-eeehHHHHHhccCCCcC
Q psy4650         205 GCKIIWARHSEVQQANLKTMPEVFENITAGVVL-TLSVHVTIKYRLDISDS  254 (381)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l-~~~~~d~~~~~~d~~~~  254 (381)
                      ++..+.....+..       ...+.++|+|..+ +.+..++..+.||+...
T Consensus       147 ~~~~~~~~~~~~~-------~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~  190 (391)
T 1l0q_A          147 TKAVINTVSVGRS-------PKGIAVTPDGTKVYVANFDSMSISVIDTVTN  190 (391)
T ss_dssp             TTEEEEEEECCSS-------EEEEEECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred             CCcEEEEEecCCC-------cceEEECCCCCEEEEEeCCCCEEEEEECCCC
Confidence            8877765543211       1225678999877 56677778888988653

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.78  E-value=2.7e-17  Score=145.59  Aligned_cols=151  Identities=17%  Similarity=0.243  Sum_probs=125.7

Q ss_pred             eeecCCCceEEEEEecCCeEEEecCCCcc--ceeeEeeccccccEEEEEeeeCCCcc-EEEEEcCCCeEEEEECCCCeEE
Q psy4650          39 ITTNKDMIEYKISYQESSRVKAFNPIQVA--TLILKTLYGHEKGVNCVDYYHGGDKP-YLISGADDRLVKIWDYQNKTCV  115 (381)
Q Consensus        39 i~~~~~~~~~~~s~~~d~~v~i~~~~~~~--~~~~~~l~~h~~~v~~~~~~~~~~~~-~l~s~~~d~~v~vwd~~~~~~~  115 (381)
                      +...++ +.++++++.|++|++||+....  .........|.+.|.++.++|.+... .+++++.+++|++||.......
T Consensus       156 ~~~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~  234 (318)
T 4ggc_A          156 LRWAPD-GRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACL  234 (318)
T ss_dssp             EEECTT-SSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEE
T ss_pred             EEEcCC-CCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccc
Confidence            333443 5689999999999999986532  23445667889999999999976642 2357788999999999988766


Q ss_pred             EEeccCCCCEEEEEEecCCCEEEEEe--CCCCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCCCeEEEE
Q psy4650         116 QTLEGHGQNISAVCFHPELPIVITGS--EDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLK  191 (381)
Q Consensus       116 ~~~~~~~~~v~~~~~~p~~~~l~s~~--~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~  191 (381)
                      .... +...+..+.|+|.+..+++++  .|+.|++||+.+++.+..+.+|.+.|++++|+|+|++|++|+.||.|++|
T Consensus       235 ~~~~-~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iW  311 (318)
T 4ggc_A          235 SAVD-AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW  311 (318)
T ss_dssp             EEEE-CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEE
T ss_pred             cccc-ceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEE
Confidence            6554 667899999999999776654  79999999999999999999999999999999999999999999999994

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.78  E-value=3.8e-17  Score=149.25  Aligned_cols=195  Identities=13%  Similarity=0.148  Sum_probs=152.6

Q ss_pred             ceeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEE
Q psy4650          36 KVDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCV  115 (381)
Q Consensus        36 ~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~  115 (381)
                      +..+...+++..++++++.+++|++||+..  ...+..+..|. .+.+++|+|++.. ++++++.++.|++||+.+++.+
T Consensus        34 ~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~--~~~~~~~~~~~-~v~~~~~spdg~~-l~~~~~~~~~v~v~d~~~~~~~  109 (391)
T 1l0q_A           34 PMGAVISPDGTKVYVANAHSNDVSIIDTAT--NNVIATVPAGS-SPQGVAVSPDGKQ-VYVTNMASSTLSVIDTTSNTVA  109 (391)
T ss_dssp             EEEEEECTTSSEEEEEEGGGTEEEEEETTT--TEEEEEEECSS-SEEEEEECTTSSE-EEEEETTTTEEEEEETTTTEEE
T ss_pred             cceEEECCCCCEEEEECCCCCeEEEEECCC--CeEEEEEECCC-CccceEECCCCCE-EEEEECCCCEEEEEECCCCeEE
Confidence            567778888666668888999999999864  44556666554 9999999998872 4467778899999999999988


Q ss_pred             EEeccCCCCEEEEEEecCCCEE-EEEeCCCCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEE-EEEeCCCeEEEEec
Q psy4650         116 QTLEGHGQNISAVCFHPELPIV-ITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNV-AIGYDEGSVLLKVG  193 (381)
Q Consensus       116 ~~~~~~~~~v~~~~~~p~~~~l-~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l-~~~~~dg~v~i~~~  193 (381)
                      ..+..| ..+.+++|+|+++.+ ++++.++.|++||+.+++....+..+ ..+.+++|+|+++.+ ++++.++.+++   
T Consensus       110 ~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~---  184 (391)
T 1l0q_A          110 GTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISV---  184 (391)
T ss_dssp             EEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEE---
T ss_pred             EEEeCC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecC-CCcceEEECCCCCEEEEEeCCCCEEEE---
Confidence            888755 468999999999977 67888999999999999988888765 567999999999877 56778899998   


Q ss_pred             CCCceEEEecCCCEEEEEecCceeecccccCCccccccCCceEEeeeh---HHHHHhccCCCc
Q psy4650         194 REEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSV---HVTIKYRLDISD  253 (381)
Q Consensus       194 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~---~d~~~~~~d~~~  253 (381)
                             ||..++..........       ....++++|+|..++++.   .+...+.||+..
T Consensus       185 -------~d~~~~~~~~~~~~~~-------~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~  233 (391)
T 1l0q_A          185 -------IDTVTNSVIDTVKVEA-------APSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGT  233 (391)
T ss_dssp             -------EETTTTEEEEEEECSS-------EEEEEEECTTSSEEEEEEECSSCCEEEEEETTT
T ss_pred             -------EECCCCeEEEEEecCC-------CccceEECCCCCEEEEEecCcCCCcEEEEECCC
Confidence                   7777777665543221       111256789998888877   466778888754

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.78  E-value=1.7e-17  Score=153.76  Aligned_cols=195  Identities=9%  Similarity=0.012  Sum_probs=154.4

Q ss_pred             ceeeeecCCCceEEEEEecCCeEEEecCCCccceeeE-----eeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECC
Q psy4650          36 KVDITTNKDMIEYKISYQESSRVKAFNPIQVATLILK-----TLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQ  110 (381)
Q Consensus        36 ~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~-----~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~  110 (381)
                      +..+...+ ...++++++.+++|++||+...  ....     .+.+|.+.|.+++|+|++.  ++++++.|+.|++||+.
T Consensus       125 ~~~~~~s~-~~~~~~~~~~~~~i~~~d~~~g--~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~s~~~d~~v~~~d~~  199 (433)
T 3bws_A          125 PKSVRFID-NTRLAIPLLEDEGMDVLDINSG--QTVRLSPPEKYKKKLGFVETISIPEHNE--LWVSQMQANAVHVFDLK  199 (433)
T ss_dssp             BCCCEESS-SSEEEEEBTTSSSEEEEETTTC--CEEEECCCHHHHTTCCEEEEEEEGGGTE--EEEEEGGGTEEEEEETT
T ss_pred             ceEEEEeC-CCeEEEEeCCCCeEEEEECCCC--eEeeecCcccccccCCceeEEEEcCCCE--EEEEECCCCEEEEEECC
Confidence            34566666 5778889999999999998743  2333     4568999999999988765  89999999999999999


Q ss_pred             CCeEEEEeccCCCCEEEEEEecCCCEEE-EEeCCCCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEe------
Q psy4650         111 NKTCVQTLEGHGQNISAVCFHPELPIVI-TGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGY------  183 (381)
Q Consensus       111 ~~~~~~~~~~~~~~v~~~~~~p~~~~l~-s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~------  183 (381)
                      +++.+..+..|...+.+++|+|++..++ +++.|+.|++||+.+++....+..+ ..+.+++|+|+|+.+++++      
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~g~~l~~~~~~~~~~  278 (433)
T 3bws_A          200 TLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKI-GLPRGLLLSKDGKELYIAQFSASNQ  278 (433)
T ss_dssp             TCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCC-SEEEEEEECTTSSEEEEEEEESCTT
T ss_pred             CceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCC-CCceEEEEcCCCCEEEEEECCCCcc
Confidence            9999999988999999999999999775 5557999999999999988877654 5689999999999998887      


Q ss_pred             --CCCeEEEEecCCCceEEEecCCCEEEEEecCceeecccccCCccccccCCceEE-eeehHHHHHhccCCCc
Q psy4650         184 --DEGSVLLKVGREEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGVVL-TLSVHVTIKYRLDISD  253 (381)
Q Consensus       184 --~dg~v~i~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l-~~~~~d~~~~~~d~~~  253 (381)
                        .||.+++          ||..++..+.......       ....+.|+|+|..+ +++..++....|++..
T Consensus       279 ~~~dg~i~~----------~d~~~~~~~~~~~~~~-------~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~  334 (433)
T 3bws_A          279 ESGGGRLGI----------YSMDKEKLIDTIGPPG-------NKRHIVSGNTENKIYVSDMCCSKIEVYDLKE  334 (433)
T ss_dssp             CSCCEEEEE----------EETTTTEEEEEEEEEE-------CEEEEEECSSTTEEEEEETTTTEEEEEETTT
T ss_pred             ccCCCeEEE----------EECCCCcEEeeccCCC-------CcceEEECCCCCEEEEEecCCCEEEEEECCC
Confidence              4778888          8887777665542211       11125678898644 5667888888898864

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.75  E-value=2.3e-17  Score=152.90  Aligned_cols=151  Identities=13%  Similarity=0.129  Sum_probs=117.5

Q ss_pred             eeeecCCCceEEEEEecCCeEEEecCCCcc---------ceee----EeeccccccEEEEEeeeCCCccEEE----EEcC
Q psy4650          38 DITTNKDMIEYKISYQESSRVKAFNPIQVA---------TLIL----KTLYGHEKGVNCVDYYHGGDKPYLI----SGAD  100 (381)
Q Consensus        38 ~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~---------~~~~----~~l~~h~~~v~~~~~~~~~~~~~l~----s~~~  100 (381)
                      .+...+. ..++++++.++ +++|+.....         ....    .....|.+.|.+++|+|++.  +|+    +|+.
T Consensus        41 ~lavs~~-~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~--~lav~~~sgs~  116 (434)
T 2oit_A           41 LLAVSNK-YGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNL--TLSACMMSSEY  116 (434)
T ss_dssp             CEEEETT-TTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSC--EEEEEEEETTT
T ss_pred             EEEEecC-CCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCC--EEEEEEeccCC
Confidence            3444444 34677777776 8887652110         0000    01123567899999999877  777    8999


Q ss_pred             CCeEEEEECCCC--------e---EEEEeccCCCCEEEEEEecC-CCEEEEEeCCCCEEEEeCCCCeeeEEEecCCcceE
Q psy4650         101 DRLVKIWDYQNK--------T---CVQTLEGHGQNISAVCFHPE-LPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVW  168 (381)
Q Consensus       101 d~~v~vwd~~~~--------~---~~~~~~~~~~~v~~~~~~p~-~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~  168 (381)
                      |++|++||+.++        +   ....+.+|...|.+++|+|+ +.++++++.||+|++||++++.......+|...|.
T Consensus       117 d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~  196 (434)
T 2oit_A          117 GSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVAVT  196 (434)
T ss_dssp             EEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGGCEE
T ss_pred             CceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCCcee
Confidence            999999998654        1   24667789999999999998 78999999999999999999987777777889999


Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEe
Q psy4650         169 TISSLKGSNNVAIGYDEGSVLLKV  192 (381)
Q Consensus       169 ~v~~~~~~~~l~~~~~dg~v~i~~  192 (381)
                      +++|+|+|++|++|+.||.+++|+
T Consensus       197 ~v~wspdg~~lasgs~dg~v~iwd  220 (434)
T 2oit_A          197 SVCWSPKGKQLAVGKQNGTVVQYL  220 (434)
T ss_dssp             EEEECTTSSCEEEEETTSCEEEEC
T ss_pred             EEEEcCCCCEEEEEcCCCcEEEEc
Confidence            999999999999999999999943

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.74  E-value=1e-16  Score=148.45  Aligned_cols=144  Identities=12%  Similarity=0.036  Sum_probs=116.0

Q ss_pred             ceeeeecCCCceEEE----EEecCCeEEEecCCCc-----cc----eeeEeeccccccEEEEEeeeCCCccEEEEEcCCC
Q psy4650          36 KVDITTNKDMIEYKI----SYQESSRVKAFNPIQV-----AT----LILKTLYGHEKGVNCVDYYHGGDKPYLISGADDR  102 (381)
Q Consensus        36 ~~~i~~~~~~~~~~~----s~~~d~~v~i~~~~~~-----~~----~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~  102 (381)
                      ...+.+++++ .+++    +++.|++|++||+...     ..    ..+..+.+|.+.|.+++|+|+.. .+|++++.||
T Consensus        95 v~~l~~spdg-~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~-~~las~s~Dg  172 (434)
T 2oit_A           95 IHHLALSCDN-LTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVP-SMVAVCLADG  172 (434)
T ss_dssp             EEEEEECTTS-CEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCT-TEEEEEETTS
T ss_pred             ccEEEEcCCC-CEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCC-CEEEEEECCC
Confidence            4567777774 4666    8889999999998532     00    12466778999999999999733 3899999999


Q ss_pred             eEEEEECCCCeEEEEeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEecC-------CcceEEEEEcCC
Q psy4650         103 LVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYG-------LERVWTISSLKG  175 (381)
Q Consensus       103 ~v~vwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~-------~~~v~~v~~~~~  175 (381)
                      +|++||++++.......+|...|.+++|+|+|.+|++|+.||.|++||.+ +.....+..+       ...+.+++|+++
T Consensus       173 ~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~  251 (434)
T 2oit_A          173 SIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGT  251 (434)
T ss_dssp             CEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEET
T ss_pred             eEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecC
Confidence            99999999987777777899999999999999999999999999999998 5555555433       238999999998


Q ss_pred             CCEEEEE
Q psy4650         176 SNNVAIG  182 (381)
Q Consensus       176 ~~~l~~~  182 (381)
                      +.++++.
T Consensus       252 ~~~l~~~  258 (434)
T 2oit_A          252 YVFAIVY  258 (434)
T ss_dssp             TEEEEEE
T ss_pred             ceEEEEE
Confidence            8776543

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.74  E-value=3e-16  Score=145.27  Aligned_cols=183  Identities=13%  Similarity=0.028  Sum_probs=144.0

Q ss_pred             eeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEE
Q psy4650          37 VDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQ  116 (381)
Q Consensus        37 ~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~  116 (381)
                      ..+...++ +.++++++.++.+++||+..  ...+..+.+|...+.+++|+|++.. ++++++.|+.|++||+.+++.+.
T Consensus       173 ~~~~~~~~-~~~~~s~~~d~~v~~~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~i~~~d~~~~~~~~  248 (433)
T 3bws_A          173 ETISIPEH-NELWVSQMQANAVHVFDLKT--LAYKATVDLTGKWSKILLYDPIRDL-VYCSNWISEDISVIDRKTKLEIR  248 (433)
T ss_dssp             EEEEEGGG-TEEEEEEGGGTEEEEEETTT--CCEEEEEECSSSSEEEEEEETTTTE-EEEEETTTTEEEEEETTTTEEEE
T ss_pred             eEEEEcCC-CEEEEEECCCCEEEEEECCC--ceEEEEEcCCCCCeeEEEEcCCCCE-EEEEecCCCcEEEEECCCCcEEE
Confidence            34555444 66899999999999999864  4556777889999999999998772 44677789999999999999888


Q ss_pred             EeccCCCCEEEEEEecCCCEEEEEe--------CCCCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEE-EEEeCCCe
Q psy4650         117 TLEGHGQNISAVCFHPELPIVITGS--------EDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNV-AIGYDEGS  187 (381)
Q Consensus       117 ~~~~~~~~v~~~~~~p~~~~l~s~~--------~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l-~~~~~dg~  187 (381)
                      .+..+ ..+.+++|+|++..+++++        .|+.|++||+.+++....+. +...+.+++|+|+++.+ ++++.++.
T Consensus       249 ~~~~~-~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~  326 (433)
T 3bws_A          249 KTDKI-GLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIG-PPGNKRHIVSGNTENKIYVSDMCCSK  326 (433)
T ss_dssp             ECCCC-SEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEE-EEECEEEEEECSSTTEEEEEETTTTE
T ss_pred             EecCC-CCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeecc-CCCCcceEEECCCCCEEEEEecCCCE
Confidence            88764 4689999999999888887        58899999999998777663 45688999999999754 66688999


Q ss_pred             EEEEecCCCceEEEecCCCEEEEEecCceeecccccCCccccccCCceEEeeehH
Q psy4650         188 VLLKVGREEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSVH  242 (381)
Q Consensus       188 v~i~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~  242 (381)
                      +.+          ||..++..+.......       ....++++|+|..++++..
T Consensus       327 v~v----------~d~~~~~~~~~~~~~~-------~~~~~~~s~dg~~l~~~~~  364 (433)
T 3bws_A          327 IEV----------YDLKEKKVQKSIPVFD-------KPNTIALSPDGKYLYVSCR  364 (433)
T ss_dssp             EEE----------EETTTTEEEEEEECSS-------SEEEEEECTTSSEEEEEEC
T ss_pred             EEE----------EECCCCcEEEEecCCC-------CCCeEEEcCCCCEEEEEec
Confidence            999          8887777766553221       1112578899988887765

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.71  E-value=4.9e-16  Score=143.27  Aligned_cols=176  Identities=13%  Similarity=0.069  Sum_probs=132.0

Q ss_pred             CeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCC---eEEEEECCCCeEEEEeccCCCCEEEEEEec
Q psy4650          56 SRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDR---LVKIWDYQNKTCVQTLEGHGQNISAVCFHP  132 (381)
Q Consensus        56 ~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~---~v~vwd~~~~~~~~~~~~~~~~v~~~~~~p  132 (381)
                      ++|++||+..   .....+.+|.+.+.+++|+|++.  .|++++.++   .|++||+.+++.. .+..|...+.+++|+|
T Consensus       159 ~~i~i~d~~g---~~~~~l~~~~~~v~~~~~Spdg~--~la~~s~~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~sp  232 (415)
T 2hqs_A          159 YELRVSDYDG---YNQFVVHRSPQPLMSPAWSPDGS--KLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSP  232 (415)
T ss_dssp             EEEEEEETTS---CSCEEEEEESSCEEEEEECTTSS--EEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECT
T ss_pred             ceEEEEcCCC---CCCEEEeCCCCcceeeEEcCCCC--EEEEEEecCCCcEEEEEECCCCcEE-EeecCCCcccCEEEcC
Confidence            7999999853   34577888999999999999887  788888875   9999999998765 4666888999999999


Q ss_pred             CCCEEE-EEeCCCC--EEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeC-CCeEEEEecCCCceEEEecCCCEE
Q psy4650         133 ELPIVI-TGSEDGS--VRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYD-EGSVLLKVGREEPAVSMDVNGCKI  208 (381)
Q Consensus       133 ~~~~l~-s~~~d~~--i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~-dg~v~i~~~~~~~~~~~d~~~~~~  208 (381)
                      +|+.|+ +++.++.  |++||+.+++. ..+..+...+.+++|+|+|+.++.++. ++...+|.        ||..++..
T Consensus       233 dg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~--------~d~~~~~~  303 (415)
T 2hqs_A          233 DGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYK--------VNINGGAP  303 (415)
T ss_dssp             TSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEE--------EETTSSCC
T ss_pred             CCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEE--------EECCCCCE
Confidence            999777 6666655  99999998875 556677788999999999999888876 45444432        67766542


Q ss_pred             EEEecCceeecccccCCccccccCCceEEeeehHH---HHHhccCCCc
Q psy4650         209 IWARHSEVQQANLKTMPEVFENITAGVVLTLSVHV---TIKYRLDISD  253 (381)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~d---~~~~~~d~~~  253 (381)
                      .. +..+      ........|+|||+.++++..+   ...+.|++..
T Consensus       304 ~~-l~~~------~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~  344 (415)
T 2hqs_A          304 QR-ITWE------GSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLAT  344 (415)
T ss_dssp             EE-CCCS------SSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTT
T ss_pred             EE-EecC------CCcccCeEECCCCCEEEEEECcCCceEEEEEECCC
Confidence            21 1111      0111125789999999887764   3566777754

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.68  E-value=3.6e-15  Score=137.45  Aligned_cols=191  Identities=9%  Similarity=-0.002  Sum_probs=139.2

Q ss_pred             ceeeeecCCCceEEEEEecCC---eEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEE-EEcCCCe--EEEEEC
Q psy4650          36 KVDITTNKDMIEYKISYQESS---RVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLI-SGADDRL--VKIWDY  109 (381)
Q Consensus        36 ~~~i~~~~~~~~~~~s~~~d~---~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~-s~~~d~~--v~vwd~  109 (381)
                      ...+.+.+++ ..++.++.++   .|++||+....   ...+.+|.+.+.+++|+|++.  .|+ +++.++.  |.+||+
T Consensus       181 v~~~~~Spdg-~~la~~s~~~~~~~i~~~d~~tg~---~~~l~~~~~~~~~~~~spdg~--~la~~~~~~g~~~i~~~d~  254 (415)
T 2hqs_A          181 LMSPAWSPDG-SKLAYVTFESGRSALVIQTLANGA---VRQVASFPRHNGAPAFSPDGS--KLAFALSKTGSLNLYVMDL  254 (415)
T ss_dssp             EEEEEECTTS-SEEEEEECTTSSCEEEEEETTTCC---EEEEECCSSCEEEEEECTTSS--EEEEEECTTSSCEEEEEET
T ss_pred             ceeeEEcCCC-CEEEEEEecCCCcEEEEEECCCCc---EEEeecCCCcccCEEEcCCCC--EEEEEEecCCCceEEEEEC
Confidence            3456677774 4677777664   99999997432   245678889999999999887  455 7766654  999999


Q ss_pred             CCCeEEEEeccCCCCEEEEEEecCCCEEEEEeC-CC--CEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCC-
Q psy4650         110 QNKTCVQTLEGHGQNISAVCFHPELPIVITGSE-DG--SVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDE-  185 (381)
Q Consensus       110 ~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~-d~--~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d-  185 (381)
                      .+++. ..+..|...+.+++|+|+|+.++.++. ++  .|.+||+.+++. ..+..+...+.+++|+|+|++++.++.+ 
T Consensus       255 ~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdG~~l~~~~~~~  332 (415)
T 2hqs_A          255 ASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNG  332 (415)
T ss_dssp             TTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC-EECCCSSSEEEEEEECTTSSEEEEEEECS
T ss_pred             CCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCE-EEEecCCCcccCeEECCCCCEEEEEECcC
Confidence            98875 567778889999999999998888776 44  677789988764 3445566788999999999999888764 


Q ss_pred             --CeEEEEecCCCceEEEecCCCEEEEEecCceeecccccCCccccccCCceEEeeehHHH---HHhccCCC
Q psy4650         186 --GSVLLKVGREEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSVHVT---IKYRLDIS  252 (381)
Q Consensus       186 --g~v~i~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~d~---~~~~~d~~  252 (381)
                        +.+.+          ||..++.... +...      . ......|+|||+.+++++.+.   ..+.|++.
T Consensus       333 g~~~i~~----------~d~~~~~~~~-l~~~------~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~  386 (415)
T 2hqs_A          333 GQQHIAK----------QDLATGGVQV-LSST------F-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD  386 (415)
T ss_dssp             SCEEEEE----------EETTTCCEEE-CCCS------S-SCEEEEECTTSSEEEEEEEETTEEEEEEEETT
T ss_pred             CceEEEE----------EECCCCCEEE-ecCC------C-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECC
Confidence              35555          8887765432 2111      0 122257899999999888766   45667664

>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, ATP-binding, Ca binding, chaperone, nucleotide-binding, phosphoprotein; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A*

Probab=99.65  E-value=2e-18  Score=166.65  Aligned_cols=295  Identities=15%  Similarity=0.146  Sum_probs=182.5

Q ss_pred             chhhhHHHhhhhhcccccccCCChhhHHHHhhhcceeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeecccc---
Q psy4650           2 SRLISQAKNTIIKNKRALNTELTETDIETIVRETKVDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHE---   78 (381)
Q Consensus         2 ~~~~~~~~~t~~~~k~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~---   78 (381)
                      +++.+||.||++.+||++|++++++.++...+..||.+...+++. ..+.....|.-+.|.+.+....++..++.+.   
T Consensus        55 ~~~~~~p~~ti~~~KrllG~~~~d~~v~~~~~~~p~~v~~~~~g~-~~~~~~~~g~~~~~speei~a~~L~~lk~~ae~~  133 (675)
T 3d2f_A           55 NKQTSNIKNTVANLKRIIGLDYHHPDFEQESKHFTSKLVELDDKK-TGAEVRFAGEKHVFSATQLAAMFIDKVKDTVKQD  133 (675)
T ss_dssp             HHHTTCGGGEECCHHHHTTCBTTCTTHHHHHTTCCSEEEECTTSB-EEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHH
T ss_pred             HhhhhChHhHHHHHHHHhCCCCCcHHHHHHHhhCCeeEEEcCCCc-eEEEEEeCCCCceEcHHHHHHHHHHHHHHHHHHH
Confidence            567889999999999999999999999999999999998765533 3333344455567887666666666554321   


Q ss_pred             --ccEEEEEee-eCC----CccEEEEEcCCCeEEEEECCCCeEEEEeccCCCCEEEEEEecCCCEEEE-EeCCCCEEEEe
Q psy4650          79 --KGVNCVDYY-HGG----DKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPIVIT-GSEDGSVRVWH  150 (381)
Q Consensus        79 --~~v~~~~~~-~~~----~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s-~~~d~~i~vwd  150 (381)
                        ..+..+.++ |..    +++.+..+.        .......+..+....+..  ++|.-+...+.. -..+..+.|+|
T Consensus       134 lg~~v~~~VITVPa~f~~~qR~a~~~Aa--------~~AGl~~~~li~EP~AAA--laygl~~~~~~~~~~~~~~vlV~D  203 (675)
T 3d2f_A          134 TKANITDVCIAVPPWYTEEQRYNIADAA--------RIAGLNPVRIVNDVTAAG--VSYGIFKTDLPEGEEKPRIVAFVD  203 (675)
T ss_dssp             HCSCCCEEEEEECTTCCHHHHHHHHHHH--------HHTTCEEEEEEEHHHHHH--HHHHHHCSCCCCSSSCCEEEEEEE
T ss_pred             hCCCcceEEEEECCCCCHHHHHHHHHHH--------HHcCCceEEEEcchHHHH--HHHhhhccccccccCCCcEEEEEE
Confidence              122222111 100    000000000        000011122222111110  000000000000 01245688899


Q ss_pred             CCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCceEEEecCCCEEEEEecCceeecccccCCccccc
Q psy4650         151 SGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKVGREEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFEN  230 (381)
Q Consensus       151 ~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (381)
                      +..|+...++-         .+.           +|.+.+-.      ..+|.                .+++...    
T Consensus       204 lGGGT~Dvsv~---------~~~-----------~g~~~V~a------~~gd~----------------~lGG~d~----  237 (675)
T 3d2f_A          204 IGHSSYTCSIM---------AFK-----------KGQLKVLG------TACDK----------------HFGGRDF----  237 (675)
T ss_dssp             ECSSCEEEEEE---------EEE-----------TTEEEEEE------EEEET----------------TCSHHHH----
T ss_pred             cCCCcEEEEEE---------Eec-----------CCeEEEEE------EcCCC----------------CccHHHH----
Confidence            88877544332         111           11111100      00111                2222221    


Q ss_pred             cCCceEEeeehHHHHHhccCCCcChhHHHHHHHHHhhhhhhccccceeeEEEecccCCcccccccChHHHHHHHHHHhhh
Q psy4650         231 ITAGVVLTLSVHVTIKYRLDISDSHRSVAKLRAAAETCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIGGLLTS  310 (381)
Q Consensus       231 ~~dg~~l~~~~~d~~~~~~d~~~~~~~~~~l~~~~e~ak~~lS~~~~~~i~~~~l~~g~~~~~~itr~~fe~l~~~l~~~  310 (381)
                       +....-++...+...+..++..+++++++|+.+||++|+.||...++.+.++++++|.++..+++|++|++++.+++.+
T Consensus       238 -D~~l~~~l~~~f~~~~~~~~~~~~~a~~rL~~~aE~aK~~Ls~~~~~~i~i~~~~~g~~~~~~itr~~fe~l~~~l~~~  316 (675)
T 3d2f_A          238 -DLAITEHFADEFKTKYKIDIRENPKAYNRILTAAEKLKKVLSANTNAPFSVESVMNDVDVSSQLSREELEELVKPLLER  316 (675)
T ss_dssp             -HHHHHHHHHHHHHHHTSCCGGGCHHHHHHHHHHHHHHHHHHHHCSEEEEEETTSSSSCCEEEEEEHHHHHHHTHHHHTT
T ss_pred             -HHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHhcCcCCceEEEEeeeccCceEEEEEeHHHHHHHHHHHHHH
Confidence             1111111222334456677778899999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhHhhhccccceeeEeeccccCcceEEeecHHHHHHHHHHHHHH
Q psy4650         311 FVQPCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIGGLLTS  357 (381)
Q Consensus       311 ~~~~~~~~Ls~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~  357 (381)
                      +.++++++|..+   .+..+.++.++++||+.++|.++++++++|++
T Consensus       317 i~~~i~~~L~~a---~l~~~~I~~VvLvGGssriP~v~~~l~~~fg~  360 (675)
T 3d2f_A          317 VTEPVTKALAQA---KLSAEEVDFVEIIGGTTRIPTLKQSISEAFGK  360 (675)
T ss_dssp             TTHHHHHHHHHH---TCCGGGCCEEEEESGGGGSHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHh---CCChhhCcEEEEECCCccChHHHHHHHHhcCC
Confidence            999999999874   45566788889999999999999999999984

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.61  E-value=8.8e-14  Score=124.77  Aligned_cols=198  Identities=13%  Similarity=0.055  Sum_probs=147.6

Q ss_pred             cceeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccc---------cEEEEEeeeCCCccEEEEE-cCCCeE
Q psy4650          35 TKVDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEK---------GVNCVDYYHGGDKPYLISG-ADDRLV  104 (381)
Q Consensus        35 ~~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~---------~v~~~~~~~~~~~~~l~s~-~~d~~v  104 (381)
                      .+..+...+++..++++...++.+.+||+..  ...+..+..+..         .+.++.|+|++.. +++++ +.++.|
T Consensus        90 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~-l~~~~~~~~~~i  166 (353)
T 3vgz_A           90 KPFGATINNTTQTLWFGNTVNSAVTAIDAKT--GEVKGRLVLDDRKRTEEVRPLQPRELVADDATNT-VYISGIGKESVI  166 (353)
T ss_dssp             CCCSEEEETTTTEEEEEETTTTEEEEEETTT--CCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTE-EEEEEESSSCEE
T ss_pred             CcceEEECCCCCEEEEEecCCCEEEEEeCCC--CeeEEEEecCCCccccccCCCCCceEEECCCCCE-EEEEecCCCceE
Confidence            3556677777666777878889999999864  334455554432         2788999998873 33333 468999


Q ss_pred             EEEECCCCeEEEEeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEec----CCcceEEEEEcCCCCEEE
Q psy4650         105 KIWDYQNKTCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTY----GLERVWTISSLKGSNNVA  180 (381)
Q Consensus       105 ~vwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~----~~~~v~~v~~~~~~~~l~  180 (381)
                      .+||..+++....+..+...+.+++|+|++..++.++.++.+.+||..+++....+..    +...+..++|+|+|+.++
T Consensus       167 ~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~  246 (353)
T 3vgz_A          167 WVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAF  246 (353)
T ss_dssp             EEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEE
T ss_pred             EEEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEE
Confidence            9999999998888876666688999999999999999999999999999998887764    455678899999999776


Q ss_pred             EEeC-CCeEEEEecCCCceEEEecCCCEEEEEecCceeecccccCCccccccCCceEEeeeh-HHHHHhccCCCc
Q psy4650         181 IGYD-EGSVLLKVGREEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSV-HVTIKYRLDISD  253 (381)
Q Consensus       181 ~~~~-dg~v~i~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~-~d~~~~~~d~~~  253 (381)
                      +++. ++.+.+          ||..++..+.......        ...+.++|||..+++.. .++....||...
T Consensus       247 ~~~~~~~~v~~----------~d~~~~~~~~~~~~~~--------~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~  303 (353)
T 3vgz_A          247 ITDSKAAEVLV----------VDTRNGNILAKVAAPE--------SLAVLFNPARNEAYVTHRQAGKVSVIDAKS  303 (353)
T ss_dssp             EEESSSSEEEE----------EETTTCCEEEEEECSS--------CCCEEEETTTTEEEEEETTTTEEEEEETTT
T ss_pred             EEeCCCCEEEE----------EECCCCcEEEEEEcCC--------CceEEECCCCCEEEEEECCCCeEEEEECCC
Confidence            6654 478887          8887777666554321        12257889998665554 566777787654

>1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus} SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A*

Probab=99.61  E-value=1.1e-17  Score=158.83  Aligned_cols=289  Identities=17%  Similarity=0.270  Sum_probs=178.8

Q ss_pred             chhhhHHHhhhhhcccccccCCChhhHHHHhhhcceeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeecccc---
Q psy4650           2 SRLISQAKNTIIKNKRALNTELTETDIETIVRETKVDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHE---   78 (381)
Q Consensus         2 ~~~~~~~~~t~~~~k~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~---   78 (381)
                      +++.+||.||++.+||++|++|+++.++...+.+||.+...+  +...+....++..+.|.+.+.....+..++.+.   
T Consensus        57 ~~~~~~p~~ti~~~KrllG~~~~d~~v~~~~~~~p~~v~~~~--g~~~~~v~~~~~~~~~sp~ei~a~~L~~lk~~ae~~  134 (554)
T 1yuw_A           57 NQVAMNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDA--GRPKVQVEYKGETKSFYPEEVSSMVLTKMKEIAEAY  134 (554)
T ss_dssp             TTTTTCGGGEECCGGGTTTCCSSCSHHHHHHTTCSSEEEEET--TEEEEEEEETTEEEEECHHHHHHHHHHHHHHHHHHH
T ss_pred             HhhhhChhhehHhhHHhcCCCCCcHHHHHHhhcCCeEEEecC--CceEEEEEECCCceEEcHHHHHHHHHHHHHHHHHHH
Confidence            567889999999999999999999999999999999988543  233333444556677887766666666554321   


Q ss_pred             --ccEEEEEee-eCC----CccEEEEEcCCCeEEEEECCCCeEEEEeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeC
Q psy4650          79 --KGVNCVDYY-HGG----DKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHS  151 (381)
Q Consensus        79 --~~v~~~~~~-~~~----~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~  151 (381)
                        ..+..+.++ |..    +++.+..+.        ....-..+..+....+.  ++++.-+...    ..+..+.|+|+
T Consensus       135 lg~~v~~~VitVPa~f~~~qr~a~~~A~--------~~AGl~~~~li~EP~AA--Alay~~~~~~----~~~~~vlV~D~  200 (554)
T 1yuw_A          135 LGKTVTNAVVTVPAYFNDSQRQATKDAG--------TIAGLNVLRIINEPTAA--AIAYGLDKKV----GAERNVLIFDL  200 (554)
T ss_dssp             HSSCCCEEEEEECTTCCHHHHHHHHHHH--------HTTTCEEEEEEEHHHHH--HHHTTCSTTC----SSCEEEEEEEE
T ss_pred             hCCCCCeEEEEECCCCCHHHHHHHHHHH--------HHcCCCeEEEeCcHHHH--HHHHHhhccC----CCCcEEEEEEc
Confidence              122222111 100    000000000        00001112222111110  0001000000    12456888888


Q ss_pred             CCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCceEEEecCCCEEEEEecCceeecccccCCcccccc
Q psy4650         152 GTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKVGREEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENI  231 (381)
Q Consensus       152 ~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (381)
                      ..|+...++-.         +.           +|.+.+-.      ...+                ..+++...     
T Consensus       201 GgGT~Dvsv~~---------~~-----------~g~~~v~a------~~g~----------------~~lGG~d~-----  233 (554)
T 1yuw_A          201 GGGTFDVSILT---------IA-----------AGIFEVKS------TAGD----------------THLGGEDF-----  233 (554)
T ss_dssp             CSSCEEEEEEE---------EE-----------TTEEEEEE------EEEE----------------TTCSHHHH-----
T ss_pred             CCCeEEEEEEE---------Ec-----------CCcEEEEE------EeCC----------------CCCCHHHH-----
Confidence            87765443321         10           11111100      0011                12222111     


Q ss_pred             CCceEEeeehHHHHHhccCCCcChhHHHHHHHHHhhhhhhccccceeeEEEecccCCcccccccChHHHHHHHHHHhhhh
Q psy4650         232 TAGVVLTLSVHVTIKYRLDISDSHRSVAKLRAAAETCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIGGLLTSF  311 (381)
Q Consensus       232 ~dg~~l~~~~~d~~~~~~d~~~~~~~~~~l~~~~e~ak~~lS~~~~~~i~~~~l~~g~~~~~~itr~~fe~l~~~l~~~~  311 (381)
                      +....-++.......+..++..+++++++++.++|++|+.||...++.+.++++++|.++...++|++|++++.+++.++
T Consensus       234 d~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~aE~~K~~ls~~~~~~i~i~~~~~g~~~~~~ltr~~~e~l~~~~~~~i  313 (554)
T 1yuw_A          234 DNRMVNHFIAEFKRKHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRGT  313 (554)
T ss_dssp             HHHHHHHHHHHHHHHTSCCTTSCHHHHHHHHHHHHHHHHHHTTSSEEEEEETTCSSSCCEEEEEEHHHHHHHTHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHHhhhcccCceEEEEEeeccCCceEEEEEEHHHHHHHHHHHHHHH
Confidence            01000112223334556677788899999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhHhhhccccceeeEeeccccCcceEEeecHHHHHHHHHHHHH
Q psy4650         312 VQPCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIGGLLT  356 (381)
Q Consensus       312 ~~~~~~~Ls~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~  356 (381)
                      .++++++|..+   .+....+..++++||+.+.|.+++++++.|+
T Consensus       314 ~~~i~~~L~~a---~~~~~~i~~VvLvGG~srip~v~~~l~~~f~  355 (554)
T 1yuw_A          314 LDPVEKALRDA---KLDKSQIHDIVLVGGSTRIPKIQKLLQDFFN  355 (554)
T ss_dssp             THHHHHHHHHT---TCCGGGCCEEEEESGGGGCHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHc---CCChhhCcEEEEECCcccChHHHHHHHHHcC
Confidence            99999999874   4455677888999999999999999999996

>4b9q_A Chaperone protein DNAK; HET: ATP; 2.40A {Escherichia coli} PDB: 2kho_A 1dkg_D

Probab=99.59  E-value=1.3e-17  Score=159.68  Aligned_cols=290  Identities=13%  Similarity=0.161  Sum_probs=178.0

Q ss_pred             chhhhHHHhhhhhcccccccCCChhhHHHHhhhcceeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeecccc---
Q psy4650           2 SRLISQAKNTIIKNKRALNTELTETDIETIVRETKVDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHE---   78 (381)
Q Consensus         2 ~~~~~~~~~t~~~~k~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~---   78 (381)
                      +++.+||.||++.+||++|++|++|.++...+..||.+...+++...+ ..  ++  +.|.+.+.....+..++.+.   
T Consensus        56 ~~~~~~p~~ti~~~KrllG~~~~d~~v~~~~~~~p~~~~~~~~g~~~~-~~--~~--~~~~p~ei~a~iL~~lk~~ae~~  130 (605)
T 4b9q_A           56 RQAVTNPQNTLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAADNGDAWV-EV--KG--QKMAPPQISAEVLKKMKKTAEDY  130 (605)
T ss_dssp             HTTTTCGGGEECCGGGTTTCBTTSHHHHHHHTTCSSEEEECTTSBEEE-EE--TT--EEECHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhCCCcEehhhHHhhCCCCCCHHHHHHhhcCCeEEEEcCCCceEE-EE--CC--EEECHHHHHHHHHHHHHHHHHHH
Confidence            567889999999999999999999999999999999998876544332 22  22  35777665555555554321   


Q ss_pred             --ccEEEEEee-eCC----CccEEEEEcCCCeEEEEECCCCeEEEEeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeC
Q psy4650          79 --KGVNCVDYY-HGG----DKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHS  151 (381)
Q Consensus        79 --~~v~~~~~~-~~~----~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~  151 (381)
                        ..+..+.++ |..    ++..+..+.        ....-..+..+....+.  ++++.-+..     ..+..+.|+|+
T Consensus       131 lg~~v~~~VITVPa~f~~~qr~a~~~Aa--------~~AGl~v~~li~EP~AA--Alaygl~~~-----~~~~~vlV~Dl  195 (605)
T 4b9q_A          131 LGEPVTEAVITVPAYFNDAQRQATKDAG--------RIAGLEVKRIINEPTAA--ALAYGLDKG-----TGNRTIAVYDL  195 (605)
T ss_dssp             HTSCCCEEEEEECTTCCHHHHHHHHHHH--------HHTTCEEEEEEEHHHHH--HHHHHTTSC-----CSSEEEEEEEE
T ss_pred             hCCCCCeEEEEECCCCCHHHHHHHHHHH--------HHcCCceEEEeCcHHHH--HHHhhhhcc-----CCCCEEEEEEC
Confidence              122222111 100    000000000        00001122222222111  111100100     12457889999


Q ss_pred             CCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCceEEEecCCCEEEEEecCceeecccccCCcccccc
Q psy4650         152 GTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKVGREEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENI  231 (381)
Q Consensus       152 ~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (381)
                      ..|+...++-....      ..+.          +.+.+                      ........+++...     
T Consensus       196 GGGT~Dvsi~~~~~------~~~~----------~~~ev----------------------la~~gd~~lGG~d~-----  232 (605)
T 4b9q_A          196 GGGAFDISIIEIDE------VDGE----------KTFEV----------------------LATNGDTHLGGEDF-----  232 (605)
T ss_dssp             CSSCEEEEEEEEEE------SSSC----------EEEEE----------------------EEEEEETTCSHHHH-----
T ss_pred             CCCeEEEEEEEEec------CCCC----------ceEEE----------------------EEecCCCCcChHHH-----
Confidence            88876544321100      0000          11111                      00000012222111     


Q ss_pred             CCceEEeeehHHHHHhccCCCcChhHHHHHHHHHhhhhhhccccceeeEEEecccCC----cccccccChHHHHHHHHHH
Q psy4650         232 TAGVVLTLSVHVTIKYRLDISDSHRSVAKLRAAAETCMHVLSTLQSSNVFVESLYDG----LDFHHNVSRARFESLIGGL  307 (381)
Q Consensus       232 ~dg~~l~~~~~d~~~~~~d~~~~~~~~~~l~~~~e~ak~~lS~~~~~~i~~~~l~~g----~~~~~~itr~~fe~l~~~l  307 (381)
                      +....-++.......+..++..+++++++|+.++|++|+.||...++.+.++.+..+    .++..+++|++|++++.++
T Consensus       233 D~~l~~~l~~~f~~~~~~~~~~~~~~~~~L~~~aE~~K~~Ls~~~~~~i~~~~~~~~~~g~~~~~~~itr~~~e~l~~~~  312 (605)
T 4b9q_A          233 DSRLINYLVEEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNLPYITADATGPKHMNIKVTRAKLESLVEDL  312 (605)
T ss_dssp             HHHHHHHHHHHHHHHTCCCGGGCHHHHHHHHHHHHHHHHHTTTCSEEEEEEEEEEECSSSEEEEEEEEEHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhcCCCcccCHHHHHHHHHHHHHHHHhcCcCCCeEEEEeeeccCCCCCeeEEEEEeHHHHHHHHHHH
Confidence            111111122334445667788889999999999999999999999999998876543    6789999999999999999


Q ss_pred             hhhhhhhhHhhhccccceeeEeeccccCcceEEeecHHHHHHHHHHHHHH
Q psy4650         308 LTSFVQPCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIGGLLTS  357 (381)
Q Consensus       308 ~~~~~~~~~~~Ls~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~  357 (381)
                      +.++.++++++|..   +.+....+..++++||+.++|.++++++++|++
T Consensus       313 ~~~i~~~v~~~L~~---a~~~~~~i~~VvLvGG~sriP~v~~~l~~~fg~  359 (605)
T 4b9q_A          313 VNRSIEPLKVALQD---AGLSVSDIDDVILVGGQTRMPMVQKKVAEFFGK  359 (605)
T ss_dssp             HHHTTHHHHHHHHH---TTCCGGGCSEEEEESGGGGSHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHHHH---cCCCHHHCcEEEEeCCccCchHHHHHHHHHhcc
Confidence            99999999999987   455567788889999999999999999999974

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.58  E-value=1.2e-13  Score=122.90  Aligned_cols=195  Identities=10%  Similarity=0.000  Sum_probs=133.5

Q ss_pred             cCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeE-EEEecc
Q psy4650          42 NKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTC-VQTLEG  120 (381)
Q Consensus        42 ~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~-~~~~~~  120 (381)
                      ..+....+++++.++.|.+||+..  ......+..+...+ +++|+|++.. +++++..++.|.+||..++.. ...+..
T Consensus         6 ~~~~~~~~v~~~~~~~v~~~d~~~--~~~~~~~~~~~~~~-~~~~s~dg~~-l~~~~~~~~~i~~~d~~~~~~~~~~~~~   81 (331)
T 3u4y_A            6 QTTSNFGIVVEQHLRRISFFSTDT--LEILNQITLGYDFV-DTAITSDCSN-VVVTSDFCQTLVQIETQLEPPKVVAIQE   81 (331)
T ss_dssp             -CCCCEEEEEEGGGTEEEEEETTT--CCEEEEEECCCCEE-EEEECSSSCE-EEEEESTTCEEEEEECSSSSCEEEEEEE
T ss_pred             cCCCCEEEEEecCCCeEEEEeCcc--cceeeeEEccCCcc-eEEEcCCCCE-EEEEeCCCCeEEEEECCCCceeEEeccc
Confidence            344466788899999999999874  33445555556666 9999998872 445555689999999999887 777776


Q ss_pred             CCCCEEEEEEecCCCEEEEEeCCC---CEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEE-EEeCCCe-EEEEecCC
Q psy4650         121 HGQNISAVCFHPELPIVITGSEDG---SVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVA-IGYDEGS-VLLKVGRE  195 (381)
Q Consensus       121 ~~~~v~~~~~~p~~~~l~s~~~d~---~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~-~~~~dg~-v~i~~~~~  195 (381)
                      +..+..+++|+|++++++++..++   .|.+||+.+++.+..+..+ ....+++|+|+|++++ ++..++. +.+|.   
T Consensus        82 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~i~~~~---  157 (331)
T 3u4y_A           82 GQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-YDAVGIAISPNGNGLILIDRSSANTVRRFK---  157 (331)
T ss_dssp             CSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECC-TTEEEEEECTTSSCEEEEEETTTTEEEEEE---
T ss_pred             CCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECC-CCccceEECCCCCEEEEEecCCCceEEEEE---
Confidence            766666699999999888555443   8999999999988877654 4568999999998554 4455577 88844   


Q ss_pred             CceEEEecCCCEEEEEecCceeecccccCCccccccCCceEEeee-hHHHHHhccCCCc
Q psy4650         196 EPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLS-VHVTIKYRLDISD  253 (381)
Q Consensus       196 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~-~~d~~~~~~d~~~  253 (381)
                             ......+.... . ...........+.++|||+.+++. ..+.....|++..
T Consensus       158 -------~~~~g~~~~~~-~-~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~  207 (331)
T 3u4y_A          158 -------IDADGVLFDTG-Q-EFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQN  207 (331)
T ss_dssp             -------ECTTCCEEEEE-E-EEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             -------ECCCCcEeecC-C-ccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCC
Confidence                   33222121111 0 001111222336789999866544 4566777888754

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.58  E-value=1.4e-13  Score=123.37  Aligned_cols=204  Identities=8%  Similarity=0.025  Sum_probs=147.0

Q ss_pred             hcceeeeecCCCceEEEEEec------CCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEE
Q psy4650          34 ETKVDITTNKDMIEYKISYQE------SSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIW  107 (381)
Q Consensus        34 ~~~~~i~~~~~~~~~~~s~~~------d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vw  107 (381)
                      ..++.+...+++..+.++...      ++.|.+||+..  ...+..+.. ...+.++.|+|++.. +++++..++.|.+|
T Consensus        41 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~--~~~~~~~~~-~~~~~~~~~s~dg~~-l~v~~~~~~~v~~~  116 (353)
T 3vgz_A           41 KGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVT--LEVTQAIHN-DLKPFGATINNTTQT-LWFGNTVNSAVTAI  116 (353)
T ss_dssp             SSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTT--CCEEEEEEE-SSCCCSEEEETTTTE-EEEEETTTTEEEEE
T ss_pred             cCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCC--CeEEEEEec-CCCcceEEECCCCCE-EEEEecCCCEEEEE
Confidence            345667777775555444433      67899999864  334444443 345788999998873 56677778999999


Q ss_pred             ECCCCeEEEEeccCCCC---------EEEEEEecCCCEEEEEe--CCCCEEEEeCCCCeeeEEEecCCcceEEEEEcCCC
Q psy4650         108 DYQNKTCVQTLEGHGQN---------ISAVCFHPELPIVITGS--EDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGS  176 (381)
Q Consensus       108 d~~~~~~~~~~~~~~~~---------v~~~~~~p~~~~l~s~~--~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~  176 (381)
                      |..+++.+..+..+...         +.+++|+|++..++.++  .++.|.+||..+++....+..+...+.+++|+|+|
T Consensus       117 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg  196 (353)
T 3vgz_A          117 DAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEG  196 (353)
T ss_dssp             ETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTT
T ss_pred             eCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCC
Confidence            99999988877654322         68899999999776665  47889999999999988887555668889999999


Q ss_pred             CEEEEEeCCCeEEEEecCCCceEEEecCCCEEEEEecCceeecccccCCccccccCCceEEeeehHH-HHHhccCCCc
Q psy4650         177 NNVAIGYDEGSVLLKVGREEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSVHV-TIKYRLDISD  253 (381)
Q Consensus       177 ~~l~~~~~dg~v~i~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~d-~~~~~~d~~~  253 (381)
                      +.+++++.++.+.+          ||..++...+........  .......++++|+|..+++.... ...+.||...
T Consensus       197 ~~l~~~~~~~~i~~----------~d~~~~~~~~~~~~~~~~--~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~  262 (353)
T 3vgz_A          197 KRLYTTNADGELIT----------IDTADNKILSRKKLLDDG--KEHFFINISLDTARQRAFITDSKAAEVLVVDTRN  262 (353)
T ss_dssp             TEEEEECTTSEEEE----------EETTTTEEEEEEECCCSS--SCCCEEEEEEETTTTEEEEEESSSSEEEEEETTT
T ss_pred             CEEEEEcCCCeEEE----------EECCCCeEEEEEEcCCCC--CCcccceEEECCCCCEEEEEeCCCCEEEEEECCC
Confidence            99999999998888          888888877765431110  01111125678999877666543 5667777654

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.57  E-value=1.4e-13  Score=131.09  Aligned_cols=186  Identities=13%  Similarity=0.080  Sum_probs=139.9

Q ss_pred             ceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEEC--CCCeEEEEeccCCC
Q psy4650          46 IEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDY--QNKTCVQTLEGHGQ  123 (381)
Q Consensus        46 ~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~--~~~~~~~~~~~~~~  123 (381)
                      +.++++++.+++|.+||...  ..++.++..+.. +.+++|+|++.  ++++++.|++|++||+  .+++.+..+. +..
T Consensus       149 ~~~~vs~~~d~~V~v~D~~t--~~~~~~i~~g~~-~~~v~~spdg~--~l~v~~~d~~V~v~D~~~~t~~~~~~i~-~g~  222 (543)
T 1nir_A          149 NLFSVTLRDAGQIALVDGDS--KKIVKVIDTGYA-VHISRMSASGR--YLLVIGRDARIDMIDLWAKEPTKVAEIK-IGI  222 (543)
T ss_dssp             GEEEEEEGGGTEEEEEETTT--CCEEEEEECSTT-EEEEEECTTSC--EEEEEETTSEEEEEETTSSSCEEEEEEE-CCS
T ss_pred             CEEEEEEcCCCeEEEEECCC--ceEEEEEecCcc-cceEEECCCCC--EEEEECCCCeEEEEECcCCCCcEEEEEe-cCC
Confidence            56888999999999999864  456677773333 89999999887  7999999999999999  8888888887 445


Q ss_pred             CEEEEEEec----CCCEEEEEeC-CCCEEEEeCCCCeeeEEEecC-----------CcceEEEEEcCCCC-EEEEEeCCC
Q psy4650         124 NISAVCFHP----ELPIVITGSE-DGSVRVWHSGTHRLEISLTYG-----------LERVWTISSLKGSN-NVAIGYDEG  186 (381)
Q Consensus       124 ~v~~~~~~p----~~~~l~s~~~-d~~i~vwd~~~~~~~~~~~~~-----------~~~v~~v~~~~~~~-~l~~~~~dg  186 (381)
                      .+..++|+|    +|+++++++. +++|.+||..+++.+..+..+           ...+.++.++|++. ++++...+|
T Consensus       223 ~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g  302 (543)
T 1nir_A          223 EARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETG  302 (543)
T ss_dssp             EEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTT
T ss_pred             CcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCC
Confidence            679999999    9999888874 899999999999998887642           22788999999766 456667788


Q ss_pred             eEEEEecCCCceEEEecCCCEEE--EEecCceeecccccCCccccccCCceEEeee-hHHHHHhccCCCcC
Q psy4650         187 SVLLKVGREEPAVSMDVNGCKII--WARHSEVQQANLKTMPEVFENITAGVVLTLS-VHVTIKYRLDISDS  254 (381)
Q Consensus       187 ~v~i~~~~~~~~~~~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~-~~d~~~~~~d~~~~  254 (381)
                      .+.+          ||..+...+  ..+.       .......+.|+|||++++++ ..++.+..||....
T Consensus       303 ~i~v----------vd~~~~~~l~~~~i~-------~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg  356 (543)
T 1nir_A          303 KVLL----------VNYKDIDNLTVTSIG-------AAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDR  356 (543)
T ss_dssp             EEEE----------EECTTSSSCEEEEEE-------CCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTT
T ss_pred             eEEE----------EEecCCCcceeEEec-------cCcCccCceECCCCCEEEEEecCCCeEEEEECCCC
Confidence            8888          555433211  1111       11222236789999976654 45667788887654

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.57  E-value=2.1e-13  Score=121.33  Aligned_cols=192  Identities=9%  Similarity=-0.047  Sum_probs=138.6

Q ss_pred             ceeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeec-c----ccccEEEEEeeeCCCccEEEEEc-----------
Q psy4650          36 KVDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLY-G----HEKGVNCVDYYHGGDKPYLISGA-----------   99 (381)
Q Consensus        36 ~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~-~----h~~~v~~~~~~~~~~~~~l~s~~-----------   99 (381)
                      +..+...+++..++++++.++.|.+||+...  ..+..+. +    |...+.+++|+|++.  +++.++           
T Consensus        36 ~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~s~dg~--~l~~~~~~~~~~~~~~~  111 (337)
T 1pby_B           36 PMVPMVAPGGRIAYATVNKSESLVKIDLVTG--ETLGRIDLSTPEERVKSLFGAALSPDGK--TLAIYESPVRLELTHFE  111 (337)
T ss_dssp             CCCEEECTTSSEEEEEETTTTEEEEEETTTC--CEEEEEECCBTTEEEECTTCEEECTTSS--EEEEEEEEEEECSSCEE
T ss_pred             ccceEEcCCCCEEEEEeCCCCeEEEEECCCC--CeEeeEEcCCcccccccccceEECCCCC--EEEEEeccccccccccc
Confidence            6677788886667778888899999998643  3333333 2    223677899999887  566664           


Q ss_pred             -CCCeEEEEECCCCeEEEEeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEecCC--------------
Q psy4650         100 -DDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGL--------------  164 (381)
Q Consensus       100 -~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~--------------  164 (381)
                       .++.|.+||..+++....+.. ...+.+++|+|+++.++.+  ++.|.+||+.+++....+..+.              
T Consensus       112 ~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l  188 (337)
T 1pby_B          112 VQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAV  188 (337)
T ss_dssp             ECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCC
T ss_pred             ccCceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEE
Confidence             579999999999988777764 4457889999999988777  6889999999887765543321              


Q ss_pred             ----------------------------------------------------cceEEEEEcCCCCEEEEEeCCCeEEEEe
Q psy4650         165 ----------------------------------------------------ERVWTISSLKGSNNVAIGYDEGSVLLKV  192 (381)
Q Consensus       165 ----------------------------------------------------~~v~~v~~~~~~~~l~~~~~dg~v~i~~  192 (381)
                                                                          ..+.+++|+|+|++++++  ++.+.+  
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~--  264 (337)
T 1pby_B          189 WNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLES--  264 (337)
T ss_dssp             CCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEE--
T ss_pred             eeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--CCeEEE--
Confidence                                                                123457888888877776  567766  


Q ss_pred             cCCCceEEEecCCCEEEEEecCceeecccccCCccccccCCceEEeeehHHHHHhccCCCc
Q psy4650         193 GREEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSVHVTIKYRLDISD  253 (381)
Q Consensus       193 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~d~~~~~~d~~~  253 (381)
                              ||..+++.+......       .....++++|||..++++..++....|++..
T Consensus       265 --------~d~~~~~~~~~~~~~-------~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~  310 (337)
T 1pby_B          265 --------FDLEKNASIKRVPLP-------HSYYSVNVSTDGSTVWLGGALGDLAAYDAET  310 (337)
T ss_dssp             --------EETTTTEEEEEEECS-------SCCCEEEECTTSCEEEEESBSSEEEEEETTT
T ss_pred             --------EECCCCcCcceecCC-------CceeeEEECCCCCEEEEEcCCCcEEEEECcC
Confidence                    888777776554322       1122367889999888887777788888754

>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli}

Probab=99.56  E-value=2.5e-17  Score=157.79  Aligned_cols=290  Identities=14%  Similarity=0.190  Sum_probs=175.4

Q ss_pred             chhhhHHHhhhhhcccccccCCChhhHHHHhhhcceeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeecccc---
Q psy4650           2 SRLISQAKNTIIKNKRALNTELTETDIETIVRETKVDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHE---   78 (381)
Q Consensus         2 ~~~~~~~~~t~~~~k~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~---   78 (381)
                      +++.+||.||++++||++|++|+++.++...+..||.+....++...+ ..  +|  +.|.+.+.....+..++.+.   
T Consensus        56 ~~~~~~p~~t~~~~Kr~iG~~~~d~~v~~~~~~~p~~~~~~~~g~~~i-~~--~g--~~~~~~ei~a~~L~~l~~~ae~~  130 (605)
T 2kho_A           56 RQAVTNPQNTLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAADNGDAWV-EV--KG--QKMAPPQISAEVLKKMKKTAEDY  130 (605)
T ss_dssp             TTTTTCGGGEEECGGGTTTCBSSSTTHHHHHHHCSSCEEECTTSBEEE-EE--TT--EEECHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhhhCCCCEeehhhHhhCCCCCcHHHHHHhhcCCeEEEECCCCceEE-EE--CC--EEEcHHHHHHHHHHHHHHHHHHH
Confidence            467789999999999999999999999999999999987665543333 32  33  35677655555555554321   


Q ss_pred             --ccEEEEEe-eeC----CCccEEEEEcCCCeEEEEECCCCeEEEEeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeC
Q psy4650          79 --KGVNCVDY-YHG----GDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHS  151 (381)
Q Consensus        79 --~~v~~~~~-~~~----~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~  151 (381)
                        ..+..+.+ .|.    .+++.+..+.        .......+..+....+.  ++++.-+..     ..+..+.|+|+
T Consensus       131 l~~~v~~~VitVPa~f~d~qr~a~~~A~--------~~AGl~v~~li~EP~AA--Alay~l~~~-----~~~~~vlV~Dl  195 (605)
T 2kho_A          131 LGEPVTEAVITVPAYFNDAQRQATKDAG--------RIAGLEVKRIINEPTAA--ALAYGLDKG-----TGNRTIAVYDL  195 (605)
T ss_dssp             HCSCCCEEEEEECTTCCHHHHHHHHHHH--------HTTTCEEEEEEEHHHHH--HHHTTTTSS-----SSEEEEEEEEE
T ss_pred             hCCCCcEEEEEECCCCCHHHHHHHHHHH--------HHcCCceEEEecCHHHH--HHHhhhccc-----CCCCEEEEEEC
Confidence              11221111 110    0000000000        00001112222211110  001100100     02456888998


Q ss_pred             CCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCceEEEecCCCEEEEEecCceeecccccCCcccccc
Q psy4650         152 GTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKVGREEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENI  231 (381)
Q Consensus       152 ~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (381)
                      ..|+...++-         .+.+..       .+|.+.+          .            .......+++...     
T Consensus       196 GGGT~Dvsi~---------~~~~~~-------~~g~~~v----------~------------a~~gd~~lGG~d~-----  232 (605)
T 2kho_A          196 GGGTFDISII---------EIDEVD-------GEKTFEV----------L------------ATNGDTHLGGEDF-----  232 (605)
T ss_dssp             CSSCEEEEEE---------EEECTT-------TSCEEEE----------E------------EEEEESSCSGGGT-----
T ss_pred             CCCeEEEEEE---------EEEecC-------CCCeEEE----------E------------EECCCCCccHHHH-----
Confidence            8877644332         111100       0111111          0            0000112232222     


Q ss_pred             CCceEEeeehHHHHHhccCCCcChhHHHHHHHHHhhhhhhccccceeeEEEecccC---C-cccccccChHHHHHHHHHH
Q psy4650         232 TAGVVLTLSVHVTIKYRLDISDSHRSVAKLRAAAETCMHVLSTLQSSNVFVESLYD---G-LDFHHNVSRARFESLIGGL  307 (381)
Q Consensus       232 ~dg~~l~~~~~d~~~~~~d~~~~~~~~~~l~~~~e~ak~~lS~~~~~~i~~~~l~~---g-~~~~~~itr~~fe~l~~~l  307 (381)
                      +....-++.......+..++..+++++++|+.++|++|+.||...++.+.++++++   | .++..+++|++|++++.++
T Consensus       233 D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~aE~~K~~ls~~~~~~i~l~~~~~~~~G~~~~~~~itr~~fe~l~~~~  312 (605)
T 2kho_A          233 DSRLINYLVEEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNLPYITADATGPKHMNIKVTRAKLESLVEDL  312 (605)
T ss_dssp             HHHHHHHHHHHHHHHHSCCSTTCHHHHHHHHHHHHHHHHHTTSSSEEEEEEEEEEEETTEEEEEEEEEEHHHHHTTCCST
T ss_pred             HHHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHHHHHcCCCCceEEEecccccCCCCceEEEEEEeHHHHHHHHHHH
Confidence            11111112233344556678888899999999999999999999999999988765   3 6778899999999999999


Q ss_pred             hhhhhhhhHhhhccccceeeEeeccccCcceEEeecHHHHHHHHHHHHHH
Q psy4650         308 LTSFVQPCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIGGLLTS  357 (381)
Q Consensus       308 ~~~~~~~~~~~Ls~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~  357 (381)
                      +.++.++++++|..+   .+....+..++++||+.++|.++++++++|++
T Consensus       313 ~~~i~~~i~~~L~~a---~~~~~~i~~VvLvGG~srip~v~~~l~~~fg~  359 (605)
T 2kho_A          313 VNRSIEPLKVALQDA---GLSVSDIDDVILVGGQTRMPMVQKKVAEFFGK  359 (605)
T ss_dssp             TGGGTSHHHHHHHTT---TCCTTTCSEEEEESGGGGSHHHHHHHHHHHSS
T ss_pred             HHHHHHHHHHHHHHc---CCChhhCceEEEECCcccChHHHHHHHHhcCC
Confidence            999999999999884   45556778889999999999999999999974

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.54  E-value=3.1e-14  Score=140.55  Aligned_cols=142  Identities=10%  Similarity=-0.014  Sum_probs=108.7

Q ss_pred             ceeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccc---cEEEEEeeeCCCccEEEEEcCC---------Ce
Q psy4650          36 KVDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEK---GVNCVDYYHGGDKPYLISGADD---------RL  103 (381)
Q Consensus        36 ~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~---~v~~~~~~~~~~~~~l~s~~~d---------~~  103 (381)
                      ++.+.+.+++. ++++ +.||++++||+...  .....+.+|..   .|.+++|+|+|.  +|++++.+         +.
T Consensus        19 ~~~~~~spdg~-~~~~-~~dg~i~~~d~~~g--~~~~~~~~~~~~~~~v~~~~~SpDg~--~l~~~~~~~~~~~~~~~~~   92 (723)
T 1xfd_A           19 DPEAKWISDTE-FIYR-EQKGTVRLWNVETN--TSTVLIEGKKIESLRAIRYEISPDRE--YALFSYNVEPIYQHSYTGY   92 (723)
T ss_dssp             CCCCCBSSSSC-BCCC-CSSSCEEEBCGGGC--CCEEEECTTTTTTTTCSEEEECTTSS--EEEEEESCCCCSSSCCCSE
T ss_pred             ccccEEcCCCc-EEEE-eCCCCEEEEECCCC--cEEEEeccccccccccceEEECCCCC--EEEEEecCccceeecceee
Confidence            56777788755 6665 78999999999743  33455566654   499999999987  78888764         78


Q ss_pred             EEEEECCCCeEEEEe---ccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEecCCcc--------------
Q psy4650         104 VKIWDYQNKTCVQTL---EGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLER--------------  166 (381)
Q Consensus       104 v~vwd~~~~~~~~~~---~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~--------------  166 (381)
                      +.+||+.+++. ..+   .+|...+..++|+|+|+.++.++. +.|++||+.+++.......+...              
T Consensus        93 i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee  170 (723)
T 1xfd_A           93 YVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEE  170 (723)
T ss_dssp             EEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHT
T ss_pred             EEEEECCCCce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEE
Confidence            88999998875 333   334455889999999999998886 78999999998876655544333              


Q ss_pred             ----eEEEEEcCCCCEEEEEeCC
Q psy4650         167 ----VWTISSLKGSNNVAIGYDE  185 (381)
Q Consensus       167 ----v~~v~~~~~~~~l~~~~~d  185 (381)
                          +.++.|+|+|+.|+.++.+
T Consensus       171 ~~~~~~~~~~SpDg~~la~~~~~  193 (723)
T 1xfd_A          171 ILKTHIAHWWSPDGTRLAYAAIN  193 (723)
T ss_dssp             TSSSSEEEEECTTSSEEEEEEEE
T ss_pred             eccCcceEEECCCCCEEEEEEEC
Confidence                3789999999999988755

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.53  E-value=6.9e-14  Score=133.11  Aligned_cols=206  Identities=14%  Similarity=0.119  Sum_probs=144.9

Q ss_pred             cceeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeE
Q psy4650          35 TKVDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTC  114 (381)
Q Consensus        35 ~~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~  114 (381)
                      .+..+...+++..++++...+++|.+||........+..+ .+...+.++.|+|++.. +++++..+++|.+||..+++.
T Consensus       281 ~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i-~~~~~~~~~~~spdg~~-l~va~~~~~~v~v~D~~tg~l  358 (543)
T 1nir_A          281 RVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSI-GAAPFLHDGGWDSSHRY-FMTAANNSNKVAVIDSKDRRL  358 (543)
T ss_dssp             CEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEE-ECCSSCCCEEECTTSCE-EEEEEGGGTEEEEEETTTTEE
T ss_pred             ceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEe-ccCcCccCceECCCCCE-EEEEecCCCeEEEEECCCCeE
Confidence            3456777887788999999999999999875433222334 46677889999998872 445666799999999999998


Q ss_pred             EEEecc----CCCCEEEEEEecC-CCEEEEEe-CCCCEEEEeCCC-------CeeeEEEecCCcceEEEEEcCCCCEEEE
Q psy4650         115 VQTLEG----HGQNISAVCFHPE-LPIVITGS-EDGSVRVWHSGT-------HRLEISLTYGLERVWTISSLKGSNNVAI  181 (381)
Q Consensus       115 ~~~~~~----~~~~v~~~~~~p~-~~~l~s~~-~d~~i~vwd~~~-------~~~~~~~~~~~~~v~~v~~~~~~~~l~~  181 (381)
                      +..+..    |.+....+ ++|+ +..++++. .|++|.+||..+       ++.+.++.++...+..++++|+|+.|++
T Consensus       359 ~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v  437 (543)
T 1nir_A          359 SALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYV  437 (543)
T ss_dssp             EEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEE
T ss_pred             EEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEE
Confidence            888764    54433333 5787 55667765 589999999998       8899999998888899999999999999


Q ss_pred             Ee-------CCCeEEEEecCCCceEEEecCCCEEEEEecCcee---ecccccCCccccccCCceEEeeeh-----HHHHH
Q psy4650         182 GY-------DEGSVLLKVGREEPAVSMDVNGCKIIWARHSEVQ---QANLKTMPEVFENITAGVVLTLSV-----HVTIK  246 (381)
Q Consensus       182 ~~-------~dg~v~i~~~~~~~~~~~d~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~dg~~l~~~~-----~d~~~  246 (381)
                      ++       .++.|.+          ||..++......-.-..   ...-......++|+|||..++++.     .+..+
T Consensus       438 ~~~~~~~~~~~~~v~v----------~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i  507 (543)
T 1nir_A          438 DTTFNPDARISQSVAV----------FDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSAL  507 (543)
T ss_dssp             CCTTCSSHHHHTCEEE----------EETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEE
T ss_pred             ecCCCCCcccCceEEE----------EECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeE
Confidence            87       2668888          66655543211100000   000011112268899999999663     35666


Q ss_pred             hccCCCc
Q psy4650         247 YRLDISD  253 (381)
Q Consensus       247 ~~~d~~~  253 (381)
                      .+||...
T Consensus       508 ~v~D~~t  514 (543)
T 1nir_A          508 VVVDDKT  514 (543)
T ss_dssp             EEEETTT
T ss_pred             EEEECCC
Confidence            7777654

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.53  E-value=1.2e-13  Score=123.35  Aligned_cols=190  Identities=11%  Similarity=0.039  Sum_probs=125.4

Q ss_pred             eEEEEEecCCeEEEecCCCccc-eeeEeeccccccEEEEEeeeCCCccEEEEEcCC-CeEEEEECC--CCe--EEEEecc
Q psy4650          47 EYKISYQESSRVKAFNPIQVAT-LILKTLYGHEKGVNCVDYYHGGDKPYLISGADD-RLVKIWDYQ--NKT--CVQTLEG  120 (381)
Q Consensus        47 ~~~~s~~~d~~v~i~~~~~~~~-~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d-~~v~vwd~~--~~~--~~~~~~~  120 (381)
                      .++++++.++.|++|++..... ..+.. ..|...+.+++|+|++.  ++++++.+ +.|.+|++.  ++.  .+..+..
T Consensus         6 ~l~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~spdg~--~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~   82 (343)
T 1ri6_A            6 TVYIASPESQQIHVWNLNHEGALTLTQV-VDVPGQVQPMVVSPDKR--YLYVGVRPEFRVLAYRIAPDDGALTFAAESAL   82 (343)
T ss_dssp             EEEEEEGGGTEEEEEEECTTSCEEEEEE-EECSSCCCCEEECTTSS--EEEEEETTTTEEEEEEECTTTCCEEEEEEEEC
T ss_pred             EEEEeCCCCCeEEEEEECCCCcEEEeee-EecCCCCceEEECCCCC--EEEEeecCCCeEEEEEecCCCCceeecccccc
Confidence            3455557899999999853222 23333 35778899999999887  57666665 999999997  554  3445554


Q ss_pred             CCCCEEEEEEecCCCEEEEEeC-CCCEEEEeCC---CCeeeEEEecCCcceEEEEEcCCCCEEEEEe-CCCeEEEEecCC
Q psy4650         121 HGQNISAVCFHPELPIVITGSE-DGSVRVWHSG---THRLEISLTYGLERVWTISSLKGSNNVAIGY-DEGSVLLKVGRE  195 (381)
Q Consensus       121 ~~~~v~~~~~~p~~~~l~s~~~-d~~i~vwd~~---~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~-~dg~v~i~~~~~  195 (381)
                      +. .+..++|+|+++.+++++. ++.|.+||+.   .+.....+.. ...+.+++|+|+|+.+++++ .++.+.+     
T Consensus        83 ~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~~-----  155 (343)
T 1ri6_A           83 PG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEG-LDGCHSANISPDNRTLWVPALKQDRICL-----  155 (343)
T ss_dssp             SS-CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECC-CTTBCCCEECTTSSEEEEEEGGGTEEEE-----
T ss_pred             CC-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccC-CCCceEEEECCCCCEEEEecCCCCEEEE-----
Confidence            44 7799999999997776655 8889999994   3344444443 34588899999999888777 8899998     


Q ss_pred             CceEEEecCC-CEEEEEecCceeecccccCCccccccCCceEEeeeh-HHHHHhccCCC
Q psy4650         196 EPAVSMDVNG-CKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSV-HVTIKYRLDIS  252 (381)
Q Consensus       196 ~~~~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~-~d~~~~~~d~~  252 (381)
                           ||..+ +......... ...........+.|+|+|..+++.. .+.....|++.
T Consensus       156 -----~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~  208 (343)
T 1ri6_A          156 -----FTVSDDGHLVAQDPAE-VTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELK  208 (343)
T ss_dssp             -----EEECTTSCEEEEEEEE-EECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESS
T ss_pred             -----EEecCCCceeeecccc-cccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEec
Confidence                 55544 3321110000 0000111112257889998776544 66667778774

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.53  E-value=1.2e-13  Score=120.36  Aligned_cols=179  Identities=9%  Similarity=0.043  Sum_probs=124.2

Q ss_pred             EEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCC-CeEEEEeccCC-CCEEEE
Q psy4650          51 SYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQN-KTCVQTLEGHG-QNISAV  128 (381)
Q Consensus        51 s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~-~~~~~~~~~~~-~~v~~~  128 (381)
                      +++.+++|++||+...   ....+..|.+.|.+++|+|++.  ++++++ ++.|.+||+.+ ++......+|. ..+.++
T Consensus        17 ~~~~~~~i~~~d~~~~---~~~~~~~~~~~v~~~~~spdg~--~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~   90 (297)
T 2ojh_A           17 GGSMRSSIEIFNIRTR---KMRVVWQTPELFEAPNWSPDGK--YLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDH   90 (297)
T ss_dssp             -CCCCEEEEEEETTTT---EEEEEEEESSCCEEEEECTTSS--EEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCC
T ss_pred             CCCcceeEEEEeCCCC---ceeeeccCCcceEeeEECCCCC--EEEEEc-CCeEEEEeCCCCCCceEeccccccccccce
Confidence            4567889999998642   2345667899999999999887  677776 88999999999 87777666663 678999


Q ss_pred             EEecCCCEEEEEe--CCCCEEEEeC--CCCeeeEEEecCCcceEEEEEcCCCCEEE-EEeCCCeEEEEecCCCceEEEec
Q psy4650         129 CFHPELPIVITGS--EDGSVRVWHS--GTHRLEISLTYGLERVWTISSLKGSNNVA-IGYDEGSVLLKVGREEPAVSMDV  203 (381)
Q Consensus       129 ~~~p~~~~l~s~~--~d~~i~vwd~--~~~~~~~~~~~~~~~v~~v~~~~~~~~l~-~~~~dg~v~i~~~~~~~~~~~d~  203 (381)
                      +|+|++..+++++  .++...||.+  .++. ...+..+ ..+..++|+|+++.++ +++.++.+.+|.        ++.
T Consensus        91 ~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~--------~~~  160 (297)
T 2ojh_A           91 GISPDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYS--------MDI  160 (297)
T ss_dssp             EECTTSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEE--------EET
T ss_pred             EECCCCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecC-CCccceEECCCCCEEEEEECCCCceEEEE--------EEC
Confidence            9999999999988  3445555554  4544 3334333 3588899999999877 677889888865        445


Q ss_pred             CCCEEEEEecCceeecccccCCccccccCCceEEeeeh-HHHHHhccCCC
Q psy4650         204 NGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSV-HVTIKYRLDIS  252 (381)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~-~d~~~~~~d~~  252 (381)
                      .++.... ....      ......+.|+|+|..+++.. .+....+|++.
T Consensus       161 ~~~~~~~-~~~~------~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~  203 (297)
T 2ojh_A          161 DSGVETR-LTHG------EGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVR  203 (297)
T ss_dssp             TTCCEEE-CCCS------SSCEEEEEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred             CCCcceE-cccC------CCccccceECCCCCEEEEEecCCCCccEEEEC
Confidence            4443221 1110      11112257889998877665 35555666553

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.52  E-value=7.4e-14  Score=138.30  Aligned_cols=148  Identities=11%  Similarity=-0.027  Sum_probs=109.7

Q ss_pred             hcceeeeecCCCceEEEEEec-CC-----eEEEecCCCccceeeEeecccc----------------------ccEEEEE
Q psy4650          34 ETKVDITTNKDMIEYKISYQE-SS-----RVKAFNPIQVATLILKTLYGHE----------------------KGVNCVD   85 (381)
Q Consensus        34 ~~~~~i~~~~~~~~~~~s~~~-d~-----~v~i~~~~~~~~~~~~~l~~h~----------------------~~v~~~~   85 (381)
                      .....+.+++++ .++++++. ++     .|++||+.......+....++.                      ..+.+++
T Consensus        37 ~~~~~~~~SpdG-~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  115 (741)
T 2ecf_A           37 PTLMKPKVAPDG-SRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ  115 (741)
T ss_dssp             CCCEEEEECTTS-SEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred             CCCCCceEecCC-CEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence            345678888884 46666666 77     8999998753332222222222                      3378999


Q ss_pred             eeeCCCccEEEEEcCCCeEEEEECCCCe--EEEEeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEecC
Q psy4650          86 YYHGGDKPYLISGADDRLVKIWDYQNKT--CVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYG  163 (381)
Q Consensus        86 ~~~~~~~~~l~s~~~d~~v~vwd~~~~~--~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~  163 (381)
                      |+|+|.  +|++++. +.|.+||+.++.  ....+..|...+.+++|+|+|+.++.++ ++.|.+||+.+++.......+
T Consensus       116 ~SpDg~--~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~~~~  191 (741)
T 2ecf_A          116 WSPDAQ--RLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQLTADG  191 (741)
T ss_dssp             ECTTSS--EEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEECCCCC
T ss_pred             ECCCCC--EEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEeccCC
Confidence            999887  6777775 999999999872  3455667888899999999999999887 458999999998766544433


Q ss_pred             Ccc----------------eEEEEEcCCCCEEEEEeCCC
Q psy4650         164 LER----------------VWTISSLKGSNNVAIGYDEG  186 (381)
Q Consensus       164 ~~~----------------v~~v~~~~~~~~l~~~~~dg  186 (381)
                      ...                +.++.|+|+|+.|+.++.|+
T Consensus       192 ~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~  230 (741)
T 2ecf_A          192 STTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDE  230 (741)
T ss_dssp             CSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEEC
T ss_pred             ccceeccccceeeeeccccccceEECCCCCEEEEEEEcC
Confidence            322                47799999999999887664

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.52  E-value=4.5e-13  Score=119.47  Aligned_cols=203  Identities=10%  Similarity=0.027  Sum_probs=129.9

Q ss_pred             cceeeeecCCCceEEEEEecC-CeEEEecCC--CccceeeEeeccccccEEEEEeeeCCCccEE-EEEcCCCeEEEEECC
Q psy4650          35 TKVDITTNKDMIEYKISYQES-SRVKAFNPI--QVATLILKTLYGHEKGVNCVDYYHGGDKPYL-ISGADDRLVKIWDYQ  110 (381)
Q Consensus        35 ~~~~i~~~~~~~~~~~s~~~d-~~v~i~~~~--~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l-~s~~~d~~v~vwd~~  110 (381)
                      .+..+...+++. ++++++.+ +.+.+|++.  ......+..+..+. .+.+++|+|++.  ++ +++..++.|.+||+.
T Consensus        39 ~~~~~~~spdg~-~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~--~l~~~~~~~~~i~~~d~~  114 (343)
T 1ri6_A           39 QVQPMVVSPDKR-YLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHISTDHQGQ--FVFVGSYNAGNVSVTRLE  114 (343)
T ss_dssp             CCCCEEECTTSS-EEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEEECTTSS--EEEEEETTTTEEEEEEEE
T ss_pred             CCceEEECCCCC-EEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEEEEcCCCC--EEEEEecCCCeEEEEECC
Confidence            345566777644 45555554 999999986  32333445555444 788999999887  45 455568999999994


Q ss_pred             ---CCeEEEEeccCCCCEEEEEEecCCCEEEEEe-CCCCEEEEeCCC-CeeeE----EEec-CCcceEEEEEcCCCCEEE
Q psy4650         111 ---NKTCVQTLEGHGQNISAVCFHPELPIVITGS-EDGSVRVWHSGT-HRLEI----SLTY-GLERVWTISSLKGSNNVA  180 (381)
Q Consensus       111 ---~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~-~d~~i~vwd~~~-~~~~~----~~~~-~~~~v~~v~~~~~~~~l~  180 (381)
                         .......+..+ ..+.+++|+|++..+++++ .++.|.+||+.+ ++...    .+.. ....+.+++|+|++++++
T Consensus       115 ~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~  193 (343)
T 1ri6_A          115 DGLPVGVVDVVEGL-DGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAY  193 (343)
T ss_dssp             TTEEEEEEEEECCC-TTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEE
T ss_pred             CCccccccccccCC-CCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEE
Confidence               33445555544 4578999999999887777 799999999987 65432    2222 334788999999999775


Q ss_pred             EEe-CCCeEEEEecCCCceEEEecC--CCEEE--EEecCceeecccccCCccccccCCceEEee-ehHHHHHhccCCC
Q psy4650         181 IGY-DEGSVLLKVGREEPAVSMDVN--GCKII--WARHSEVQQANLKTMPEVFENITAGVVLTL-SVHVTIKYRLDIS  252 (381)
Q Consensus       181 ~~~-~dg~v~i~~~~~~~~~~~d~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~-~~~d~~~~~~d~~  252 (381)
                      +++ .++.+.+          |+..  ++...  ...........-......++|+|||..+++ ...++....|++.
T Consensus       194 ~~~~~~~~i~~----------~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~  261 (343)
T 1ri6_A          194 CVNELNSSVDV----------WELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVS  261 (343)
T ss_dssp             EEETTTTEEEE----------EESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred             EEeCCCCEEEE----------EEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEc
Confidence            554 7889998          4442  23211  111100000000001112678899987774 4466677788875

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.51  E-value=1.5e-12  Score=115.77  Aligned_cols=195  Identities=8%  Similarity=0.101  Sum_probs=132.8

Q ss_pred             eeeecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCC---eEEEEECCCCeE
Q psy4650          38 DITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDR---LVKIWDYQNKTC  114 (381)
Q Consensus        38 ~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~---~v~vwd~~~~~~  114 (381)
                      .+...+++..+++++..++.|.+||+..... ....+..+..+..+++|+|++.  +++++..++   .|.+||..+++.
T Consensus        44 ~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~-~~~~~~~~~~~~~~~~~s~dg~--~l~~~~~~~~~~~i~v~d~~~~~~  120 (331)
T 3u4y_A           44 DTAITSDCSNVVVTSDFCQTLVQIETQLEPP-KVVAIQEGQSSMADVDITPDDQ--FAVTVTGLNHPFNMQSYSFLKNKF  120 (331)
T ss_dssp             EEEECSSSCEEEEEESTTCEEEEEECSSSSC-EEEEEEECSSCCCCEEECTTSS--EEEECCCSSSSCEEEEEETTTTEE
T ss_pred             eEEEcCCCCEEEEEeCCCCeEEEEECCCCce-eEEecccCCCCccceEECCCCC--EEEEecCCCCcccEEEEECCCCCe
Confidence            6777777665666666689999999975322 1556666777776699999887  677555443   999999999998


Q ss_pred             EEEeccCCCCEEEEEEecCCCEE-EEEeCCCC-EEEEeCCCCeeeE----EEecCCcceEEEEEcCCCCEEEE-EeCCCe
Q psy4650         115 VQTLEGHGQNISAVCFHPELPIV-ITGSEDGS-VRVWHSGTHRLEI----SLTYGLERVWTISSLKGSNNVAI-GYDEGS  187 (381)
Q Consensus       115 ~~~~~~~~~~v~~~~~~p~~~~l-~s~~~d~~-i~vwd~~~~~~~~----~~~~~~~~v~~v~~~~~~~~l~~-~~~dg~  187 (381)
                      +..+..+ ....+++|+|+|+.+ +++..++. +.+|++.....+.    ...........++|+|+|+++++ +..++.
T Consensus       121 ~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~  199 (331)
T 3u4y_A          121 ISTIPIP-YDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNS  199 (331)
T ss_dssp             EEEEECC-TTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTE
T ss_pred             EEEEECC-CCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCe
Confidence            8877654 456999999999855 45566688 9999987543321    12233456889999999996555 446888


Q ss_pred             EEEEecCCCceEEEecCCCEE---EEEecCceeecccccCCccccccCCceEEeeeh-HHHHHhccCCCc
Q psy4650         188 VLLKVGREEPAVSMDVNGCKI---IWARHSEVQQANLKTMPEVFENITAGVVLTLSV-HVTIKYRLDISD  253 (381)
Q Consensus       188 v~i~~~~~~~~~~~d~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~-~d~~~~~~d~~~  253 (381)
                      +.+          ||..++..   +.....       ......+.++|||+.+++.. .+.....|++..
T Consensus       200 v~v----------~d~~~~~~~~~~~~~~~-------~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~  252 (331)
T 3u4y_A          200 IGI----------LETQNPENITLLNAVGT-------NNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLS  252 (331)
T ss_dssp             EEE----------EECSSTTSCEEEEEEEC-------SSCCCCEEECTTSSEEEEECSSEEEEEEEETTT
T ss_pred             EEE----------EECCCCcccceeeeccC-------CCCCceEEECCCCCEEEEEEcCCCEEEEEECCC
Confidence            888          66655543   332221       12222367899999776554 344566677643

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.50  E-value=1.9e-12  Score=116.07  Aligned_cols=207  Identities=10%  Similarity=0.022  Sum_probs=130.7

Q ss_pred             cceeeeecCCCceEEEEEec--CCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEc-CCCeEEEEECCC
Q psy4650          35 TKVDITTNKDMIEYKISYQE--SSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGA-DDRLVKIWDYQN  111 (381)
Q Consensus        35 ~~~~i~~~~~~~~~~~s~~~--d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~-~d~~v~vwd~~~  111 (381)
                      .+..+...+++. +++++..  ++.|.+|++.......+..+..|...+..++|+|++.  +|++++ .++.+.+|++..
T Consensus        41 ~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~--~l~~~~~~~~~v~v~~~~~  117 (347)
T 3hfq_A           41 NPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQ--LVYSANYHKGTAEVMKIAA  117 (347)
T ss_dssp             CCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTT--EEEEEETTTTEEEEEEECT
T ss_pred             CcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCC--EEEEEeCCCCEEEEEEeCC
Confidence            455567777755 4444332  6899999985434445566667888899999999887  566665 789999999963


Q ss_pred             -C--eEEEEecc---------CCCCEEEEEEecCCCEEEEEeCCCCEEEEeCC-CCeeeE--EEec-CCcceEEEEEcCC
Q psy4650         112 -K--TCVQTLEG---------HGQNISAVCFHPELPIVITGSEDGSVRVWHSG-THRLEI--SLTY-GLERVWTISSLKG  175 (381)
Q Consensus       112 -~--~~~~~~~~---------~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~-~~~~~~--~~~~-~~~~v~~v~~~~~  175 (381)
                       +  ..+..+..         +...+.+++|+|+|+.+++...++.|.+||+. ++....  .+.. ....+..++|+|+
T Consensus       118 ~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spd  197 (347)
T 3hfq_A          118 DGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPD  197 (347)
T ss_dssp             TSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTT
T ss_pred             CCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCC
Confidence             3  23333322         12248899999999966666678899999998 554332  2222 2336788999999


Q ss_pred             CCEEEE-EeCCCeEEEEecCCCceEEEecCCCEEEE--EecCceeecccccCCccccccCCceEEeee-hHHHHHhccCC
Q psy4650         176 SNNVAI-GYDEGSVLLKVGREEPAVSMDVNGCKIIW--ARHSEVQQANLKTMPEVFENITAGVVLTLS-VHVTIKYRLDI  251 (381)
Q Consensus       176 ~~~l~~-~~~dg~v~i~~~~~~~~~~~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~-~~d~~~~~~d~  251 (381)
                      |+++++ +..++.+.+|.        ++..++....  .................++|+|||+++++. ..+.....|++
T Consensus       198 g~~l~v~~~~~~~v~v~~--------~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~  269 (347)
T 3hfq_A          198 GQYAFLAGELSSQIASLK--------YDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAV  269 (347)
T ss_dssp             SSEEEEEETTTTEEEEEE--------EETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEE
T ss_pred             CCEEEEEeCCCCEEEEEE--------ecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEE
Confidence            996655 55678888844        3433454321  111100000000112226789999987544 44566777876


Q ss_pred             C
Q psy4650         252 S  252 (381)
Q Consensus       252 ~  252 (381)
                      .
T Consensus       270 ~  270 (347)
T 3hfq_A          270 T  270 (347)
T ss_dssp             C
T ss_pred             C
Confidence            5

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.50  E-value=2.4e-13  Score=133.86  Aligned_cols=195  Identities=9%  Similarity=-0.031  Sum_probs=135.3

Q ss_pred             ceeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCC----
Q psy4650          36 KVDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQN----  111 (381)
Q Consensus        36 ~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~----  111 (381)
                      ...+..+++ ..++++.  ++++++||+...   ....+..|.+.+.+++|+|+|.  .|+.+ .++.|.+||+.+    
T Consensus        84 v~~~~~spd-~~~~~~~--~~~i~~~d~~~~---~~~~l~~~~~~~~~~~~SpdG~--~la~~-~~~~i~v~~~~~~~~~  154 (706)
T 2z3z_A           84 SFRTLDAGR-GLVVLFT--QGGLVGFDMLAR---KVTYLFDTNEETASLDFSPVGD--RVAYV-RNHNLYIARGGKLGEG  154 (706)
T ss_dssp             CEEEEETTT-TEEEEEE--TTEEEEEETTTT---EEEEEECCTTCCTTCEECTTSS--EEEEE-ETTEEEEEECBCTTSC
T ss_pred             ceeEEECCC-CeEEEEE--CCEEEEEECCCC---ceEEccCCcccccCCcCCCCCC--EEEEE-ECCeEEEEecCccccc
Confidence            456777887 6555553  489999998642   2344556778899999999987  67774 689999999998    


Q ss_pred             -CeEEEEeccCCCC--------------EEEEEEecCCCEEEEEe---------------------------------CC
Q psy4650         112 -KTCVQTLEGHGQN--------------ISAVCFHPELPIVITGS---------------------------------ED  143 (381)
Q Consensus       112 -~~~~~~~~~~~~~--------------v~~~~~~p~~~~l~s~~---------------------------------~d  143 (381)
                       ++.......+...              +.++.|+|+|+.|++++                                 .+
T Consensus       155 ~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~  234 (706)
T 2z3z_A          155 MSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHH  234 (706)
T ss_dssp             CCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCE
T ss_pred             CCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCe
Confidence             7766655444443              48899999999999887                                 45


Q ss_pred             CCEEEEeCCCCeeeEEEe--cCCcceEEEEEcCCCCEEEEEeCCC-----eEEEEecCCCceEEEecCCC-EEEEEecCc
Q psy4650         144 GSVRVWHSGTHRLEISLT--YGLERVWTISSLKGSNNVAIGYDEG-----SVLLKVGREEPAVSMDVNGC-KIIWARHSE  215 (381)
Q Consensus       144 ~~i~vwd~~~~~~~~~~~--~~~~~v~~v~~~~~~~~l~~~~~dg-----~v~i~~~~~~~~~~~d~~~~-~~~~~~~~~  215 (381)
                      ..|.+||+.+++......  .+...+.+++|+|+|+.+++++.++     .+.+          ||..++ .... ...+
T Consensus       235 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~----------~d~~~g~~~~~-~~~~  303 (706)
T 2z3z_A          235 VTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNA----------YDAETGRFVRT-LFVE  303 (706)
T ss_dssp             EEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEE----------EETTTCCEEEE-EEEE
T ss_pred             eEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEE----------EECCCCceeeE-EEEc
Confidence            679999999988654432  3556789999999999999887665     5655          787777 3221 1111


Q ss_pred             eeecccccCCccccccC--CceEEeeehHHHHHhccCC
Q psy4650         216 VQQANLKTMPEVFENIT--AGVVLTLSVHVTIKYRLDI  251 (381)
Q Consensus       216 ~~~~~~~~~~~~~~~~~--dg~~l~~~~~d~~~~~~d~  251 (381)
                      ....... ....+.|+|  ||.+++++..++...+|..
T Consensus       304 ~~~~~~~-~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~  340 (706)
T 2z3z_A          304 TDKHYVE-PLHPLTFLPGSNNQFIWQSRRDGWNHLYLY  340 (706)
T ss_dssp             ECSSCCC-CCSCCEECTTCSSEEEEEECTTSSCEEEEE
T ss_pred             cCCCeEC-ccCCceeecCCCCEEEEEEccCCccEEEEE
Confidence            1110010 011246888  9998888777665555544

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.49  E-value=9.4e-13  Score=114.52  Aligned_cols=186  Identities=11%  Similarity=0.083  Sum_probs=124.5

Q ss_pred             eeeeecCCCceEEEEEe--cCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEE-EEcCCCeEEEEECCC-C
Q psy4650          37 VDITTNKDMIEYKISYQ--ESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLI-SGADDRLVKIWDYQN-K  112 (381)
Q Consensus        37 ~~i~~~~~~~~~~~s~~--~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~-s~~~d~~v~vwd~~~-~  112 (381)
                      ..+.+.+++. +++.++  .++...+|...... .....+..+. .+.++.|+|++.  .++ +++.++.+++|++.. .
T Consensus        88 ~~~~~spdg~-~l~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~-~~~~~~~spdg~--~l~~~~~~~~~~~l~~~~~~~  162 (297)
T 2ojh_A           88 NDHGISPDGA-LYAISDKVEFGKSAIYLLPSTG-GTPRLMTKNL-PSYWHGWSPDGK--SFTYCGIRDQVFDIYSMDIDS  162 (297)
T ss_dssp             SCCEECTTSS-EEEEEECTTTSSCEEEEEETTC-CCCEECCSSS-SEEEEEECTTSS--EEEEEEEETTEEEEEEEETTT
T ss_pred             cceEECCCCC-EEEEEEeCCCCcceEEEEECCC-CceEEeecCC-CccceEECCCCC--EEEEEECCCCceEEEEEECCC
Confidence            4566777644 666666  33455555442211 2234444443 489999999887  454 788899999998532 2


Q ss_pred             eEEEEeccCCCCEEEEEEecCCCEEEEEe-CCCCEEEEeCC-CCeeeEEEecCCcceEEEEEcCCCCEEEEEeCC-----
Q psy4650         113 TCVQTLEGHGQNISAVCFHPELPIVITGS-EDGSVRVWHSG-THRLEISLTYGLERVWTISSLKGSNNVAIGYDE-----  185 (381)
Q Consensus       113 ~~~~~~~~~~~~v~~~~~~p~~~~l~s~~-~d~~i~vwd~~-~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d-----  185 (381)
                      .....+..|...+.+++|+|++..++.++ .++.+++|++. .+.....+..+...+.++.|+|+|++++.++.+     
T Consensus       163 ~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~  242 (297)
T 2ojh_A          163 GVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFD  242 (297)
T ss_dssp             CCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCS
T ss_pred             CcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCc
Confidence            33456667888999999999999877666 58999999986 555666777777889999999999999888765     


Q ss_pred             ------CeEEEEecCCCceEEEecCCCEE--EEEecCceeecccccCCccccccCCceEEeeehHH
Q psy4650         186 ------GSVLLKVGREEPAVSMDVNGCKI--IWARHSEVQQANLKTMPEVFENITAGVVLTLSVHV  243 (381)
Q Consensus       186 ------g~v~i~~~~~~~~~~~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~d  243 (381)
                            +.+.+          ||..++..  +.....  +    ......+.|+|||..++++..+
T Consensus       243 ~~~~~~~~l~~----------~d~~~~~~~~~~~~~~--~----~~~~~~~~~spdg~~l~~~~~~  292 (297)
T 2ojh_A          243 HPRDLDVRVQL----------MDMDGGNVETLFDLFG--G----QGTMNSPNWSPDGDEFAYVRYF  292 (297)
T ss_dssp             CCSSEEEEEEE----------EETTSCSCEEEEEEEE--S----TTTSCSCCBCTTSSEEEEEEEC
T ss_pred             ccccCceEEEE----------EecCCCCceeeeccCC--C----CcccccceECCCCCEEEEEEec
Confidence                  33555          77765532  222111  0    1111125788999998887654

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.47  E-value=7e-13  Score=130.89  Aligned_cols=190  Identities=10%  Similarity=-0.004  Sum_probs=129.7

Q ss_pred             ceeeeecCCCceEEEEEecC---------CeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEE
Q psy4650          36 KVDITTNKDMIEYKISYQES---------SRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKI  106 (381)
Q Consensus        36 ~~~i~~~~~~~~~~~s~~~d---------~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~v  106 (381)
                      ...+..++++ .+++.++.+         +.+++||+.......+....+|...+.+++|+|+|.  .|+.++. +.|++
T Consensus        63 v~~~~~SpDg-~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~--~la~~~~-~~i~~  138 (723)
T 1xfd_A           63 AIRYEISPDR-EYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQ--QLIFIFE-NNIYY  138 (723)
T ss_dssp             CSEEEECTTS-SEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTT--CEEEEET-TEEEE
T ss_pred             cceEEECCCC-CEEEEEecCccceeecceeeEEEEECCCCceEeccCCccccccccccEECCCCC--EEEEEEC-CeEEE
Confidence            4567777774 466666553         788899997544333444456666789999999987  5777765 79999


Q ss_pred             EECCCCeEEEEeccCCCCE------------------EEEEEecCCCEEEEEeCCC------------------------
Q psy4650         107 WDYQNKTCVQTLEGHGQNI------------------SAVCFHPELPIVITGSEDG------------------------  144 (381)
Q Consensus       107 wd~~~~~~~~~~~~~~~~v------------------~~~~~~p~~~~l~s~~~d~------------------------  144 (381)
                      ||..++........+...+                  .+++|+|+|+.|++++.|+                        
T Consensus       139 ~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (723)
T 1xfd_A          139 CAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHY  218 (723)
T ss_dssp             ESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEEC
T ss_pred             EECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccC
Confidence            9999988766665544333                  7899999999998887543                        


Q ss_pred             ----------CEEEEeCCCCeeeEEEecC------CcceEEEEEcCCCCEEEEEeCC----CeEEEEecCCCceEEEecC
Q psy4650         145 ----------SVRVWHSGTHRLEISLTYG------LERVWTISSLKGSNNVAIGYDE----GSVLLKVGREEPAVSMDVN  204 (381)
Q Consensus       145 ----------~i~vwd~~~~~~~~~~~~~------~~~v~~v~~~~~~~~l~~~~~d----g~v~i~~~~~~~~~~~d~~  204 (381)
                                .|.+||+.+++....+..+      ...+.++.|+|+|+++++.+..    ..+.+          ||..
T Consensus       219 ~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~----------~d~~  288 (723)
T 1xfd_A          219 PKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTL----------CDAT  288 (723)
T ss_dssp             CBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEE----------EETT
T ss_pred             CCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEE----------EeCC
Confidence                      7999999988865555543      5678999999999988766533    23444          8887


Q ss_pred             CCEEEEEecCceeecccccCCccccccCCceEEeee
Q psy4650         205 GCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLS  240 (381)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~  240 (381)
                      ++......... ....+........|+|||+.+++.
T Consensus       289 ~g~~~~~~~~~-~~~~~~~~~~~~~~spdg~~l~~~  323 (723)
T 1xfd_A          289 TGVCTKKHEDE-SEAWLHRQNEEPVFSKDGRKFFFI  323 (723)
T ss_dssp             TCCEEEEEEEE-CSSCCCCCCCCCEECTTSCSEEEE
T ss_pred             CCcceEEEEec-cCCEEeccCCCceEcCCCCeEEEE
Confidence            76644322111 001111110125789999988765

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.46  E-value=2.5e-12  Score=114.26  Aligned_cols=172  Identities=6%  Similarity=0.000  Sum_probs=126.9

Q ss_pred             eEEEEEecCCeEEEecCCCccceeeEeec-cccc-cEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEEEeccC---
Q psy4650          47 EYKISYQESSRVKAFNPIQVATLILKTLY-GHEK-GVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGH---  121 (381)
Q Consensus        47 ~~~~s~~~d~~v~i~~~~~~~~~~~~~l~-~h~~-~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~---  121 (381)
                      .++++++.+++|.+||+..  ...+..+. ++.. .+.+++|+|++.. ++++++.++.|.+||..+++.+..+...   
T Consensus         2 ~~~v~~~~~~~v~~~d~~~--~~~~~~~~~~~~~~~~~~~~~s~dg~~-l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~   78 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEK--MAVDKVITIADAGPTPMVPMVAPGGRI-AYATVNKSESLVKIDLVTGETLGRIDLSTPE   78 (337)
T ss_dssp             EEEEEEETTTEEEEEETTT--TEEEEEEECTTCTTCCCCEEECTTSSE-EEEEETTTTEEEEEETTTCCEEEEEECCBTT
T ss_pred             cEEEEcCCCCeEEEEECCC--CcEEEEEEcCCCCCCccceEEcCCCCE-EEEEeCCCCeEEEEECCCCCeEeeEEcCCcc
Confidence            4789999999999999864  34445554 2222 4789999998863 5577788899999999999877766532   


Q ss_pred             --CCCEEEEEEecCCCEEEEEe------------CCCCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCCCe
Q psy4650         122 --GQNISAVCFHPELPIVITGS------------EDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGS  187 (381)
Q Consensus       122 --~~~v~~~~~~p~~~~l~s~~------------~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~  187 (381)
                        ...+.+++|+|++..+++++            .++.|.+||+.+++....+.. ...+.+++|+|+|++++++  ++.
T Consensus        79 ~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~  155 (337)
T 1pby_B           79 ERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL--GRD  155 (337)
T ss_dssp             EEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE--SSS
T ss_pred             cccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe--CCe
Confidence              12567899999999888875            579999999999988877764 3567789999999988877  577


Q ss_pred             EEEEecCCCceEEEecCCCEEEEEecCceeecccccCCccccccCCceEEeeeh
Q psy4650         188 VLLKVGREEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSV  241 (381)
Q Consensus       188 v~i~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~  241 (381)
                      +.+          ||..++...........       .....++|||..++...
T Consensus       156 i~~----------~d~~~~~~~~~~~~~~~-------~~~~~~s~dg~~l~~~~  192 (337)
T 1pby_B          156 LHV----------MDPEAGTLVEDKPIQSW-------EAETYAQPDVLAVWNQH  192 (337)
T ss_dssp             EEE----------EETTTTEEEEEECSTTT-------TTTTBCCCBCCCCCCCC
T ss_pred             EEE----------EECCCCcEeeeeecccc-------CCCceeCCCccEEeeec
Confidence            777          88888877655432210       01135678887766544

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.45  E-value=1.2e-12  Score=129.69  Aligned_cols=198  Identities=9%  Similarity=0.003  Sum_probs=135.7

Q ss_pred             ceeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEE
Q psy4650          36 KVDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCV  115 (381)
Q Consensus        36 ~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~  115 (381)
                      ...+.+++++. +++.++. +.|++|++..........+..|...+.+++|+|+|.  +|+.++ ++.|.+||+.++...
T Consensus       111 v~~~~~SpDg~-~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~--~la~~~-~~~i~~~d~~~g~~~  185 (741)
T 2ecf_A          111 IVDYQWSPDAQ-RLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGG--FVSFIR-GRNLWVIDLASGRQM  185 (741)
T ss_dssp             SCCCEECTTSS-EEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSS--EEEEEE-TTEEEEEETTTTEEE
T ss_pred             cceeEECCCCC-EEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCC--EEEEEe-CCcEEEEecCCCCEE
Confidence            34666777754 5555554 899999986431003456778889999999999987  677776 569999999998876


Q ss_pred             EEeccCCCC----------------EEEEEEecCCCEEEEEeCCC---------------------------------CE
Q psy4650         116 QTLEGHGQN----------------ISAVCFHPELPIVITGSEDG---------------------------------SV  146 (381)
Q Consensus       116 ~~~~~~~~~----------------v~~~~~~p~~~~l~s~~~d~---------------------------------~i  146 (381)
                      .....+...                +.+++|+|+|+.|++++.|+                                 .|
T Consensus       186 ~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l  265 (741)
T 2ecf_A          186 QLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKL  265 (741)
T ss_dssp             ECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEE
T ss_pred             EeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEE
Confidence            655544432                37899999999999887665                                 78


Q ss_pred             EEEeCCC-CeeeEEEe--cCCcceEEEEEcCCCCEEEEEeC-----CCeEEEEecCCCceEEEecCCCEEEEEecCceee
Q psy4650         147 RVWHSGT-HRLEISLT--YGLERVWTISSLKGSNNVAIGYD-----EGSVLLKVGREEPAVSMDVNGCKIIWARHSEVQQ  218 (381)
Q Consensus       147 ~vwd~~~-~~~~~~~~--~~~~~v~~v~~~~~~~~l~~~~~-----dg~v~i~~~~~~~~~~~d~~~~~~~~~~~~~~~~  218 (381)
                      .+||+.+ ++......  .+...+.+++| |+|+.|+.++.     +..+.+          ||..++.......... .
T Consensus       266 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~----------~d~~~g~~~~~~~~~~-~  333 (741)
T 2ecf_A          266 GVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVE----------VTLASNQQRVLAHETS-P  333 (741)
T ss_dssp             EEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEE----------EETTTCCEEEEEEEEC-S
T ss_pred             EEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEE----------EECCCCceEEEEEcCC-C
Confidence            9999988 87654432  36678999999 99999987764     334444          7877766443322111 0


Q ss_pred             cccccCCccccccCCceEEeeehHHHHHhccCC
Q psy4650         219 ANLKTMPEVFENITAGVVLTLSVHVTIKYRLDI  251 (381)
Q Consensus       219 ~~~~~~~~~~~~~~dg~~l~~~~~d~~~~~~d~  251 (381)
                      ..+... ..+.|+|||++++++..++...+|.+
T Consensus       334 ~~~~~~-~~~~~spdg~~~~~~~~~g~~~l~~~  365 (741)
T 2ecf_A          334 TWVPLH-NSLRFLDDGSILWSSERTGFQHLYRI  365 (741)
T ss_dssp             SCCCCC-SCCEECTTSCEEEEECTTSSCEEEEE
T ss_pred             CcCCcC-CceEECCCCeEEEEecCCCccEEEEE
Confidence            000011 12578899998877777665444433

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.44  E-value=2.3e-12  Score=132.41  Aligned_cols=184  Identities=11%  Similarity=0.004  Sum_probs=138.1

Q ss_pred             ceeeeec-CCCceEEEEEecCCeEEEecCCCccceeeEeeccccc-cEEEEEeeeCCCccEEEEEcCCCeEE-EEECCCC
Q psy4650          36 KVDITTN-KDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEK-GVNCVDYYHGGDKPYLISGADDRLVK-IWDYQNK  112 (381)
Q Consensus        36 ~~~i~~~-~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~-~v~~~~~~~~~~~~~l~s~~~d~~v~-vwd~~~~  112 (381)
                      ...+.++ +++. .++.++ ++.+.+|+....   ....+..|.+ .+.++.|+ ++.  .++.++.+..+. +|+..++
T Consensus       298 v~~~~~S~pdG~-~la~~~-~~~i~~~~~~~~---~~~~~~~~~~~~~~~~~~s-dg~--~l~~~s~~~~l~~~~d~~~~  369 (1045)
T 1k32_A          298 KFAEDFSPLDGD-LIAFVS-RGQAFIQDVSGT---YVLKVPEPLRIRYVRRGGD-TKV--AFIHGTREGDFLGIYDYRTG  369 (1045)
T ss_dssp             GGEEEEEECGGG-CEEEEE-TTEEEEECTTSS---BEEECSCCSCEEEEEECSS-SEE--EEEEEETTEEEEEEEETTTC
T ss_pred             cceeeecCCCCC-EEEEEE-cCEEEEEcCCCC---ceEEccCCCcceEEeeeEc-CCC--eEEEEECCCceEEEEECCCC
Confidence            3456666 6644 455544 789999998642   2345677887 89999999 776  688888788888 9999887


Q ss_pred             eEEEEeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCCC------
Q psy4650         113 TCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEG------  186 (381)
Q Consensus       113 ~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg------  186 (381)
                      .... +.+|...+.+++|+|+|+.+++++.++.|++||+.+++.......|...+.+++|+|+|++++.++.++      
T Consensus       370 ~~~~-l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~  448 (1045)
T 1k32_A          370 KAEK-FEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDG  448 (1045)
T ss_dssp             CEEE-CCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCS
T ss_pred             CceE-ecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccC
Confidence            6544 347888999999999999999999999999999999998887778888899999999999998887654      


Q ss_pred             ----eEEEEecCCCceEEEecCCCEEEEEecCceeecccccCCccccccCCceEEeeehHHHH
Q psy4650         187 ----SVLLKVGREEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSVHVTI  245 (381)
Q Consensus       187 ----~v~i~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~d~~  245 (381)
                          .+++          ||..++. ...+..+.      .......|+|||+.+++.+.+..
T Consensus       449 ~~~~~i~l----------~d~~~g~-~~~l~~~~------~~~~~~~~spdG~~l~~~s~~~~  494 (1045)
T 1k32_A          449 YVMQAIHV----------YDMEGRK-IFAATTEN------SHDYAPAFDADSKNLYYLSYRSL  494 (1045)
T ss_dssp             CCEEEEEE----------EETTTTE-EEECSCSS------SBEEEEEECTTSCEEEEEESCCC
T ss_pred             CCCCeEEE----------EECCCCc-EEEeeCCC------cccCCceEcCCCCEEEEEecccC
Confidence                6666          7777766 22222110      00111468899998888776443

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.42  E-value=4e-12  Score=113.67  Aligned_cols=192  Identities=8%  Similarity=-0.052  Sum_probs=132.0

Q ss_pred             cceeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeecc-c-----cccEEEEEeeeCCCccEEEEEcCC-------
Q psy4650          35 TKVDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYG-H-----EKGVNCVDYYHGGDKPYLISGADD-------  101 (381)
Q Consensus        35 ~~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~-h-----~~~v~~~~~~~~~~~~~l~s~~~d-------  101 (381)
                      .+..+...+++..++++...++.|.+||+..  ......+.. +     ...+.+++|+|++.  ++++++.+       
T Consensus        44 ~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t--~~~~~~~~~~~~~~~~~~~~~~~~~spdg~--~l~~~~~~~~~~~~~  119 (349)
T 1jmx_B           44 GPGTAMMAPDNRTAYVLNNHYGDIYGIDLDT--CKNTFHANLSSVPGEVGRSMYSFAISPDGK--EVYATVNPTQRLNDH  119 (349)
T ss_dssp             SSCEEEECTTSSEEEEEETTTTEEEEEETTT--TEEEEEEESCCSTTEEEECSSCEEECTTSS--EEEEEEEEEEECSSC
T ss_pred             CCceeEECCCCCEEEEEeCCCCcEEEEeCCC--CcEEEEEEcccccccccccccceEECCCCC--EEEEEcccccccccc
Confidence            3566777777665667777889999999864  333444432 2     23478899999887  67777654       


Q ss_pred             -----CeEEEEECCCCe---EEEEeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEecCC---------
Q psy4650         102 -----RLVKIWDYQNKT---CVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGL---------  164 (381)
Q Consensus       102 -----~~v~vwd~~~~~---~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~---------  164 (381)
                           +.|.+||+.+++   .+..+.. ...+.+++|+|+|. ++.++  +.|.+||..+++....+..+.         
T Consensus       120 ~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~s~dg~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~  195 (349)
T 1jmx_B          120 YVVKPPRLEVFSTADGLEAKPVRTFPM-PRQVYLMRAADDGS-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAP  195 (349)
T ss_dssp             EEECCCEEEEEEGGGGGGBCCSEEEEC-CSSCCCEEECTTSC-EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCC
T ss_pred             cccCCCeEEEEECCCccccceeeeccC-CCcccceeECCCCc-EEEcc--CcEEEEeCCCCceeccccccccCCccccCc
Confidence                 899999998843   3334443 34688999999999 55554  349999999988776664331         


Q ss_pred             -----------------------------------------------------------cceEEEEEcC-CCCEEEEEeC
Q psy4650         165 -----------------------------------------------------------ERVWTISSLK-GSNNVAIGYD  184 (381)
Q Consensus       165 -----------------------------------------------------------~~v~~v~~~~-~~~~l~~~~~  184 (381)
                                                                                 ..+..++++| ++++++++  
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--  273 (349)
T 1jmx_B          196 DVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--  273 (349)
T ss_dssp             BCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--
T ss_pred             cceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--
Confidence                                                                       1234566678 88877777  


Q ss_pred             CCeEEEEecCCCceEEEecCCCEEEEEecCceeecccccCCccccccCCceEEeeehHHHHHhccCCCc
Q psy4650         185 EGSVLLKVGREEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSVHVTIKYRLDISD  253 (381)
Q Consensus       185 dg~v~i~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~d~~~~~~d~~~  253 (381)
                      ++.+.+          ||..++..+.......       ....++++|||..++++..++....||...
T Consensus       274 ~~~v~~----------~d~~~~~~~~~~~~~~-------~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~  325 (349)
T 1jmx_B          274 LNRLAK----------YDLKQRKLIKAANLDH-------TYYCVAFDKKGDKLYLGGTFNDLAVFNPDT  325 (349)
T ss_dssp             ESEEEE----------EETTTTEEEEEEECSS-------CCCEEEECSSSSCEEEESBSSEEEEEETTT
T ss_pred             cCeEEE----------EECccCeEEEEEcCCC-------CccceEECCCCCEEEEecCCCeEEEEeccc
Confidence            667776          8888887665543221       112267889998888877777778888753

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.42  E-value=5.6e-12  Score=112.69  Aligned_cols=141  Identities=7%  Similarity=0.007  Sum_probs=103.9

Q ss_pred             CceEEEEEecCCeEEEecCCCccceeeEeecccc-ccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEEEeccCC-
Q psy4650          45 MIEYKISYQESSRVKAFNPIQVATLILKTLYGHE-KGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHG-  122 (381)
Q Consensus        45 ~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~-~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~-  122 (381)
                      ...++++++.+++|++||+..  ...+..+..+. ..+..++|+|++.. +++++..++.|.+||..+++....+..+. 
T Consensus        10 ~~~~~v~~~~~~~v~~~d~~~--~~~~~~~~~~~~~~~~~~~~s~dg~~-~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~   86 (349)
T 1jmx_B           10 GHEYMIVTNYPNNLHVVDVAS--DTVYKSCVMPDKFGPGTAMMAPDNRT-AYVLNNHYGDIYGIDLDTCKNTFHANLSSV   86 (349)
T ss_dssp             TCEEEEEEETTTEEEEEETTT--TEEEEEEECSSCCSSCEEEECTTSSE-EEEEETTTTEEEEEETTTTEEEEEEESCCS
T ss_pred             CCEEEEEeCCCCeEEEEECCC--CcEEEEEecCCCCCCceeEECCCCCE-EEEEeCCCCcEEEEeCCCCcEEEEEEcccc
Confidence            366888999999999999864  34455555433 25788999998862 45677789999999999998877765332 


Q ss_pred             -----CCEEEEEEecCCCEEEEEeCC------------CCEEEEeCCCCee---eEEEecCCcceEEEEEcCCCCEEEEE
Q psy4650         123 -----QNISAVCFHPELPIVITGSED------------GSVRVWHSGTHRL---EISLTYGLERVWTISSLKGSNNVAIG  182 (381)
Q Consensus       123 -----~~v~~~~~~p~~~~l~s~~~d------------~~i~vwd~~~~~~---~~~~~~~~~~v~~v~~~~~~~~l~~~  182 (381)
                           ..+.+++|+|+|+.+++++.+            +.|.+||+.+++.   +..+.. ...+.+++|+|+|+ +.++
T Consensus        87 ~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~s~dg~-l~~~  164 (349)
T 1jmx_B           87 PGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPM-PRQVYLMRAADDGS-LYVA  164 (349)
T ss_dssp             TTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEEC-CSSCCCEEECTTSC-EEEE
T ss_pred             cccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccC-CCcccceeECCCCc-EEEc
Confidence                 236889999999998888755            8999999988543   333433 34688899999999 5555


Q ss_pred             eCCCeEEEEe
Q psy4650         183 YDEGSVLLKV  192 (381)
Q Consensus       183 ~~dg~v~i~~  192 (381)
                      +.  .+.+|+
T Consensus       165 ~~--~i~~~d  172 (349)
T 1jmx_B          165 GP--DIYKMD  172 (349)
T ss_dssp             SS--SEEEEC
T ss_pred             cC--cEEEEe
Confidence            43  377744

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.41  E-value=6.1e-12  Score=121.06  Aligned_cols=188  Identities=9%  Similarity=-0.022  Sum_probs=128.2

Q ss_pred             eeeeecCCCceEEEEEec---CCeEEEecCCC--ccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCC
Q psy4650          37 VDITTNKDMIEYKISYQE---SSRVKAFNPIQ--VATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQN  111 (381)
Q Consensus        37 ~~i~~~~~~~~~~~s~~~---d~~v~i~~~~~--~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~  111 (381)
                      ..+.++++  .++++++.   +...++|....  .....  .+..+ ..+...+|+|+++..++++++.++.. +||+.+
T Consensus        68 ~~~~~spd--~~l~~~~~~~g~~~~~l~~~~~~~~g~~~--~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~~~-l~d~~~  141 (582)
T 3o4h_A           68 LDPHYGVG--RVILVRDVSKGAEQHALFKVNTSRPGEEQ--RLEAV-KPMRILSGVDTGEAVVFTGATEDRVA-LYALDG  141 (582)
T ss_dssp             CEECTTCS--EEEEEEECSTTSCCEEEEEEETTSTTCCE--ECTTS-CSBEEEEEEECSSCEEEEEECSSCEE-EEEEET
T ss_pred             ccccCCCC--eEEEEeccCCCCcceEEEEEeccCCCccc--cccCC-CCceeeeeCCCCCeEEEEecCCCCce-EEEccC
Confidence            34556666  57776664   44455654422  12221  33222 23446789999886566666666655 999999


Q ss_pred             CeEEEEeccCCCCEEEEEEecCCCEEEEEeCC----CCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCCC-
Q psy4650         112 KTCVQTLEGHGQNISAVCFHPELPIVITGSED----GSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEG-  186 (381)
Q Consensus       112 ~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d----~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg-  186 (381)
                      ++.......+.   .+++|+|+|+.+++++.+    +.|++||+.+++.. .+..+...+..++|+|+|+.++++..+| 
T Consensus       142 g~~~~l~~~~~---~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~~~~  217 (582)
T 3o4h_A          142 GGLRELARLPG---FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLETARE  217 (582)
T ss_dssp             TEEEEEEEESS---CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEECSSC
T ss_pred             CcEEEeecCCC---ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccCCCe
Confidence            87665554333   889999999999988776    78999999988754 5677888899999999999999888888 


Q ss_pred             -eEEEEecCCCceEEEecCCCEEEEEecCceeecccccCCcccc--------ccCCceEEeeehHHHHHhccCC
Q psy4650         187 -SVLLKVGREEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFE--------NITAGVVLTLSVHVTIKYRLDI  251 (381)
Q Consensus       187 -~v~i~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~dg~~l~~~~~d~~~~~~d~  251 (381)
                       .+.+          ||..++... ......  ....    ...        |+|||..++++..++....|++
T Consensus       218 ~~i~~----------~d~~~~~~~-~~~~~~--~~~~----~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~  274 (582)
T 3o4h_A          218 ARLVT----------VDPRDGSVE-DLELPS--KDFS----SYRPTAITWLGYLPDGRLAVVARREGRSAVFID  274 (582)
T ss_dssp             EEEEE----------ECTTTCCEE-ECCCSC--SHHH----HHCCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred             eEEEE----------EcCCCCcEE-EccCCC--cChh----hhhhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence             5555          888777655 222111  0111    134        8899988888888887777876

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.40  E-value=2.7e-12  Score=123.50  Aligned_cols=142  Identities=10%  Similarity=-0.022  Sum_probs=108.3

Q ss_pred             ecCCCce-EEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCC----CeEEEEECCCCeEE
Q psy4650          41 TNKDMIE-YKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADD----RLVKIWDYQNKTCV  115 (381)
Q Consensus        41 ~~~~~~~-~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d----~~v~vwd~~~~~~~  115 (381)
                      ..+++.. ++++++.+ .+.+||+....   ...+..+..  .+++|+|+|.  ++++++.+    +.|.+||+.+++..
T Consensus       117 ~s~dg~~~~~~s~~~~-~~~l~d~~~g~---~~~l~~~~~--~~~~~spDG~--~la~~~~~~~~~~~i~~~d~~~g~~~  188 (582)
T 3o4h_A          117 GVDTGEAVVFTGATED-RVALYALDGGG---LRELARLPG--FGFVSDIRGD--LIAGLGFFGGGRVSLFTSNLSSGGLR  188 (582)
T ss_dssp             EEECSSCEEEEEECSS-CEEEEEEETTE---EEEEEEESS--CEEEEEEETT--EEEEEEEEETTEEEEEEEETTTCCCE
T ss_pred             eCCCCCeEEEEecCCC-CceEEEccCCc---EEEeecCCC--ceEEECCCCC--EEEEEEEcCCCCeEEEEEcCCCCCce
Confidence            3344333 44555554 45599986422   233333333  7899999988  78877766    78999999888754


Q ss_pred             EEeccCCCCEEEEEEecCCCEEEEEeCCC--CEEEEeCCCCeeeEEEecCCcceEEEE--------EcCCCCEEEEEeCC
Q psy4650         116 QTLEGHGQNISAVCFHPELPIVITGSEDG--SVRVWHSGTHRLEISLTYGLERVWTIS--------SLKGSNNVAIGYDE  185 (381)
Q Consensus       116 ~~~~~~~~~v~~~~~~p~~~~l~s~~~d~--~i~vwd~~~~~~~~~~~~~~~~v~~v~--------~~~~~~~l~~~~~d  185 (381)
                       .+.+|.+.+..++|+|+|+.++++..++  .|.+||+.+++.. .+..+...+..+.        |+|+|.++++++.+
T Consensus       189 -~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~  266 (582)
T 3o4h_A          189 -VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARRE  266 (582)
T ss_dssp             -EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEET
T ss_pred             -EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhccccceeEcCCCcEEEEEEcC
Confidence             5677888899999999999999888888  8999999998877 6666766666667        99999999999999


Q ss_pred             CeEEEEe
Q psy4650         186 GSVLLKV  192 (381)
Q Consensus       186 g~v~i~~  192 (381)
                      |.+++|.
T Consensus       267 g~~~l~~  273 (582)
T 3o4h_A          267 GRSAVFI  273 (582)
T ss_dssp             TEEEEEE
T ss_pred             CcEEEEE
Confidence            9999944

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.38  E-value=8.4e-11  Score=105.93  Aligned_cols=164  Identities=9%  Similarity=0.021  Sum_probs=114.3

Q ss_pred             cceeeeecCCCceEEEEEecCCeEEEecCCCccc----e-e------eEeeccccccEEEEEeeeCCCccEEE-EEcCCC
Q psy4650          35 TKVDITTNKDMIEYKISYQESSRVKAFNPIQVAT----L-I------LKTLYGHEKGVNCVDYYHGGDKPYLI-SGADDR  102 (381)
Q Consensus        35 ~~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~----~-~------~~~l~~h~~~v~~~~~~~~~~~~~l~-s~~~d~  102 (381)
                      ++..+...+++..++++...++.+.+|++.....    . +      ......+......++|+|++.  +++ ++..++
T Consensus       156 ~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~--~l~v~~~~~~  233 (361)
T 3scy_A          156 HLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGK--FAYLINEIGG  233 (361)
T ss_dssp             CEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSS--EEEEEETTTC
T ss_pred             cceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCC--EEEEEcCCCC
Confidence            3466788888666667777789999998754322    1 1      111223445678999999887  454 444799


Q ss_pred             eEEEEECCCCeE--EEEe---ccCCCCEEEEEEecCCCEEEEEeC--CCCEEEEeCC--CCe--eeEEEecCCcceEEEE
Q psy4650         103 LVKIWDYQNKTC--VQTL---EGHGQNISAVCFHPELPIVITGSE--DGSVRVWHSG--THR--LEISLTYGLERVWTIS  171 (381)
Q Consensus       103 ~v~vwd~~~~~~--~~~~---~~~~~~v~~~~~~p~~~~l~s~~~--d~~i~vwd~~--~~~--~~~~~~~~~~~v~~v~  171 (381)
                      .|.+|++.++..  +..+   ..+......++|+|+|++++.++.  ++.|.+|++.  +++  .+..+.. ...+.+++
T Consensus       234 ~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~  312 (361)
T 3scy_A          234 TVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFI  312 (361)
T ss_dssp             EEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEE
T ss_pred             eEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEE
Confidence            999999987754  2333   233345789999999998866655  4899999996  454  3444444 45678999


Q ss_pred             EcCCCCEEEEEe-CCCeEEEEecCCCceEEEecCCCEEE
Q psy4650         172 SLKGSNNVAIGY-DEGSVLLKVGREEPAVSMDVNGCKII  209 (381)
Q Consensus       172 ~~~~~~~l~~~~-~dg~v~i~~~~~~~~~~~d~~~~~~~  209 (381)
                      |+|+|++|++++ .++.+.+|.        +|..++.+.
T Consensus       313 ~spdg~~l~~~~~~~~~v~v~~--------~d~~~g~~~  343 (361)
T 3scy_A          313 ITPNGKYLLVACRDTNVIQIFE--------RDQATGLLT  343 (361)
T ss_dssp             ECTTSCEEEEEETTTTEEEEEE--------ECTTTCCEE
T ss_pred             ECCCCCEEEEEECCCCCEEEEE--------EECCCCcEe
Confidence            999999888887 678888855        666666543

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.38  E-value=4.6e-11  Score=107.62  Aligned_cols=197  Identities=11%  Similarity=0.068  Sum_probs=121.7

Q ss_pred             cceeeeecCCCceEEEEEecCCeEEEecCCCccc--eeeE--eecc--------ccccEEEEEeeeCCCccEEEEEcCCC
Q psy4650          35 TKVDITTNKDMIEYKISYQESSRVKAFNPIQVAT--LILK--TLYG--------HEKGVNCVDYYHGGDKPYLISGADDR  102 (381)
Q Consensus        35 ~~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~--~~~~--~l~~--------h~~~v~~~~~~~~~~~~~l~s~~~d~  102 (381)
                      .++.+..  ++..++++...++.+.+|++.....  ....  ...+        +...+.+++|+|++.. +++++..++
T Consensus       101 ~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~-l~~~~~~~~  177 (361)
T 3scy_A          101 DPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKY-LLADDLGTD  177 (361)
T ss_dssp             CEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSE-EEEEETTTT
T ss_pred             CcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCE-EEEEeCCCC
Confidence            3444544  3344445555788999999853211  1111  1111        2334688999998873 445666789


Q ss_pred             eEEEEECCCCe-------E------EEEeccCCCCEEEEEEecCCCEEEEEe-CCCCEEEEeCCCCee--eEEEec---C
Q psy4650         103 LVKIWDYQNKT-------C------VQTLEGHGQNISAVCFHPELPIVITGS-EDGSVRVWHSGTHRL--EISLTY---G  163 (381)
Q Consensus       103 ~v~vwd~~~~~-------~------~~~~~~~~~~v~~~~~~p~~~~l~s~~-~d~~i~vwd~~~~~~--~~~~~~---~  163 (381)
                      .|.+|++....       .      ......+......++|+|+|++++.++ .++.|.+||+.++..  +..+..   +
T Consensus       178 ~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~  257 (361)
T 3scy_A          178 QIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVN  257 (361)
T ss_dssp             EEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSC
T ss_pred             EEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCC
Confidence            99999887533       1      111223445678999999999877776 589999999987764  223322   2


Q ss_pred             CcceEEEEEcCCCCEEEEEeC--CCeEEEEecCCCceEEEecCCCEE--EEEecCceeecccccCCccccccCCceEEee
Q psy4650         164 LERVWTISSLKGSNNVAIGYD--EGSVLLKVGREEPAVSMDVNGCKI--IWARHSEVQQANLKTMPEVFENITAGVVLTL  239 (381)
Q Consensus       164 ~~~v~~v~~~~~~~~l~~~~~--dg~v~i~~~~~~~~~~~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~  239 (381)
                      ......++|+|+|++++++..  ++.+.+|.        ++..++..  +.....       ......++|+|||+++++
T Consensus       258 ~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~--------~~~~~g~~~~~~~~~~-------g~~~~~~~~spdg~~l~~  322 (361)
T 3scy_A          258 AQGSGDIHLSPDGKYLYASNRLKADGVAIFK--------VDETNGTLTKVGYQLT-------GIHPRNFIITPNGKYLLV  322 (361)
T ss_dssp             CCCEEEEEECTTSSEEEEEECSSSCEEEEEE--------ECTTTCCEEEEEEEEC-------SSCCCEEEECTTSCEEEE
T ss_pred             CCCcccEEECCCCCEEEEECCCCCCEEEEEE--------EcCCCCcEEEeeEecC-------CCCCceEEECCCCCEEEE
Confidence            345689999999998876665  47888844        33233432  221111       122233688999998887


Q ss_pred             ehH-HHHHhcc
Q psy4650         240 SVH-VTIKYRL  249 (381)
Q Consensus       240 ~~~-d~~~~~~  249 (381)
                      +.. ++....|
T Consensus       323 ~~~~~~~v~v~  333 (361)
T 3scy_A          323 ACRDTNVIQIF  333 (361)
T ss_dssp             EETTTTEEEEE
T ss_pred             EECCCCCEEEE
Confidence            763 4445553

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.36  E-value=1.6e-12  Score=128.33  Aligned_cols=142  Identities=10%  Similarity=0.011  Sum_probs=102.8

Q ss_pred             ceeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccc---cEEEEEeeeCCCccEEEEEcC---------CCe
Q psy4650          36 KVDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEK---GVNCVDYYHGGDKPYLISGAD---------DRL  103 (381)
Q Consensus        36 ~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~---~v~~~~~~~~~~~~~l~s~~~---------d~~  103 (381)
                      ...+.+.+++ .+++++ .|+++++|++....  ....+.+|..   .+.+++|||+|.  +|+.++.         ++.
T Consensus        18 ~~~~~~s~dg-~~~~~~-~d~~i~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~SpDg~--~la~~~~~~~~~~~s~~~~   91 (719)
T 1z68_A           18 TFFPNWISGQ-EYLHQS-ADNNIVLYNIETGQ--SYTILSNRTMKSVNASNYGLSPDRQ--FVYLESDYSKLWRYSYTAT   91 (719)
T ss_dssp             CCCCEESSSS-EEEEEC-TTSCEEEEESSSCC--EEEEECHHHHHTTTCSEEEECTTSS--EEEEEEEEEECSSSCEEEE
T ss_pred             CCccEECCCC-eEEEEc-CCCCEEEEEcCCCc--EEEEEccccccccceeeEEECCCCC--eEEEEecCceeEEeecceE
Confidence            3466677775 566654 68999999987533  3344445544   489999999988  6777765         789


Q ss_pred             EEEEECCCCeEEEEeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEE-ecCCcce---------------
Q psy4650         104 VKIWDYQNKTCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISL-TYGLERV---------------  167 (381)
Q Consensus       104 v~vwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~-~~~~~~v---------------  167 (381)
                      |++||+.+++.+.... ....+..++|+|+|+.++.+. ++.|++||+.++...... .++...+               
T Consensus        92 i~~~d~~~g~~~~~~~-l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~  169 (719)
T 1z68_A           92 YYIYDLSNGEFVRGNE-LPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLA  169 (719)
T ss_dssp             EEEEETTTTEECCSSC-CCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTC
T ss_pred             EEEEECCCCcccccee-cCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeeccc
Confidence            9999999987621111 124688999999999999886 789999999888765432 2222222               


Q ss_pred             --EEEEEcCCCCEEEEEeCC
Q psy4650         168 --WTISSLKGSNNVAIGYDE  185 (381)
Q Consensus       168 --~~v~~~~~~~~l~~~~~d  185 (381)
                        .++.|+|+|+.|+.++.|
T Consensus       170 ~~~~~~wSPDG~~la~~~~d  189 (719)
T 1z68_A          170 TKYALWWSPNGKFLAYAEFN  189 (719)
T ss_dssp             SSCCEEECTTSSEEEEEEEE
T ss_pred             CcccEEECCCCCEEEEEEEC
Confidence              489999999999998765

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.36  E-value=1.4e-10  Score=103.82  Aligned_cols=155  Identities=9%  Similarity=0.018  Sum_probs=109.3

Q ss_pred             ceeeeecCCCceEEEEEecCCeEEEecCCC-ccceeeEeecccc-ccEEEEEeeeCCCccEEEEEcCCCeEEEEECCC--
Q psy4650          36 KVDITTNKDMIEYKISYQESSRVKAFNPIQ-VATLILKTLYGHE-KGVNCVDYYHGGDKPYLISGADDRLVKIWDYQN--  111 (381)
Q Consensus        36 ~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~-~~~~~~~~l~~h~-~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~--  111 (381)
                      +..+...+++. ++++...++.+.+|++.. ........+..+. .....++|+|++.. +++++..++.+.+|++..  
T Consensus       143 ~~~~~~spdg~-l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~-l~v~~~~~~~v~v~~~~~~~  220 (347)
T 3hfq_A          143 IHYTDLTPDNR-LAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQY-AFLAGELSSQIASLKYDTQT  220 (347)
T ss_dssp             EEEEEECTTSC-EEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSE-EEEEETTTTEEEEEEEETTT
T ss_pred             ceEEEECCCCc-EEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCE-EEEEeCCCCEEEEEEecCCC
Confidence            55677788766 777888889999999862 1112222222322 36788999998873 455667899999999874  


Q ss_pred             CeE--EEEeccCC------CCEEEEEEecCCCEE-EEEeCCCCEEEEeCCC-C--eeeEEEecCCcceEEEEEcCCCCEE
Q psy4650         112 KTC--VQTLEGHG------QNISAVCFHPELPIV-ITGSEDGSVRVWHSGT-H--RLEISLTYGLERVWTISSLKGSNNV  179 (381)
Q Consensus       112 ~~~--~~~~~~~~------~~v~~~~~~p~~~~l-~s~~~d~~i~vwd~~~-~--~~~~~~~~~~~~v~~v~~~~~~~~l  179 (381)
                      +..  ...+....      ..+..++|+|+|+++ +++..++.|.+||+.. +  +.+..+..+...+..++|+|+|++|
T Consensus       221 g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l  300 (347)
T 3hfq_A          221 GAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFV  300 (347)
T ss_dssp             TEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEE
T ss_pred             CceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEE
Confidence            542  23333222      348899999999976 5566789999999972 2  4455566556678899999999988


Q ss_pred             EEEeC-CCeEEEEe
Q psy4650         180 AIGYD-EGSVLLKV  192 (381)
Q Consensus       180 ~~~~~-dg~v~i~~  192 (381)
                      ++++. ++.+.+|.
T Consensus       301 ~v~~~~~~~v~v~~  314 (347)
T 3hfq_A          301 VVVNQNTDNATLYA  314 (347)
T ss_dssp             EEEETTTTEEEEEE
T ss_pred             EEEEcCCCcEEEEE
Confidence            88775 48888853

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.35  E-value=2.3e-11  Score=124.94  Aligned_cols=147  Identities=7%  Similarity=-0.059  Sum_probs=120.6

Q ss_pred             eeeecCCCceEEEEEecCCeEE-EecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEE
Q psy4650          38 DITTNKDMIEYKISYQESSRVK-AFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQ  116 (381)
Q Consensus        38 ~i~~~~~~~~~~~s~~~d~~v~-i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~  116 (381)
                      .+.+. + +..++.++.++.+. +|++...   ....+.+|...+.+++|+|++.  +|++++.++.|++||+.+++...
T Consensus       342 ~~~~s-d-g~~l~~~s~~~~l~~~~d~~~~---~~~~l~~~~~~~~~~~~SpDG~--~la~~~~~~~v~~~d~~tg~~~~  414 (1045)
T 1k32_A          342 RRGGD-T-KVAFIHGTREGDFLGIYDYRTG---KAEKFEENLGNVFAMGVDRNGK--FAVVANDRFEIMTVDLETGKPTV  414 (1045)
T ss_dssp             EECSS-S-EEEEEEEETTEEEEEEEETTTC---CEEECCCCCCSEEEEEECTTSS--EEEEEETTSEEEEEETTTCCEEE
T ss_pred             eeeEc-C-CCeEEEEECCCceEEEEECCCC---CceEecCCccceeeeEECCCCC--EEEEECCCCeEEEEECCCCceEE
Confidence            34455 4 45677777777888 8887532   2344558889999999999887  79999999999999999998888


Q ss_pred             EeccCCCCEEEEEEecCCCEEEEEeCCC----------CEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCCC
Q psy4650         117 TLEGHGQNISAVCFHPELPIVITGSEDG----------SVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEG  186 (381)
Q Consensus       117 ~~~~~~~~v~~~~~~p~~~~l~s~~~d~----------~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg  186 (381)
                      .+.+|.+.+.+++|+|+|+++++++.++          .|++||+.+++ ...+..+...+.++.|+|+|+.++.++.++
T Consensus       415 ~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spdG~~l~~~s~~~  493 (1045)
T 1k32_A          415 IERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDADSKNLYYLSYRS  493 (1045)
T ss_dssp             EEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECTTSCEEEEEESCC
T ss_pred             eccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcCCCCEEEEEeccc
Confidence            7878999999999999999988877644          89999999987 666777878899999999999999999877


Q ss_pred             eEEEEe
Q psy4650         187 SVLLKV  192 (381)
Q Consensus       187 ~v~i~~  192 (381)
                      ....|.
T Consensus       494 ~~~~~~  499 (1045)
T 1k32_A          494 LDPSPD  499 (1045)
T ss_dssp             CCCEEC
T ss_pred             CCcCcc
Confidence            766654

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.34  E-value=1.2e-11  Score=121.77  Aligned_cols=183  Identities=15%  Similarity=0.093  Sum_probs=121.0

Q ss_pred             cCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCC-----eEEEEECCCC-eEEEEecc-CCC---
Q psy4650          54 ESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDR-----LVKIWDYQNK-TCVQTLEG-HGQ---  123 (381)
Q Consensus        54 ~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~-----~v~vwd~~~~-~~~~~~~~-~~~---  123 (381)
                      .+..+++||+.......+....+|...+.++.|+|++.  .|++++.++     .|.+||..++ ........ +..   
T Consensus       233 ~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~--~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~  310 (706)
T 2z3z_A          233 HHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDEN--ILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVE  310 (706)
T ss_dssp             CEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSS--EEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCC
T ss_pred             CeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCC--EEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeEC
Confidence            44689999986533222222235778899999999887  677776665     9999999998 43333322 222   


Q ss_pred             CEEEEEEec--CCCEEEEEeCCCCEEEEeCC-CCeeeEEEecCCcceEE-EEEcCCCCEEEEEeCC-C--eEEEEecCCC
Q psy4650         124 NISAVCFHP--ELPIVITGSEDGSVRVWHSG-THRLEISLTYGLERVWT-ISSLKGSNNVAIGYDE-G--SVLLKVGREE  196 (381)
Q Consensus       124 ~v~~~~~~p--~~~~l~s~~~d~~i~vwd~~-~~~~~~~~~~~~~~v~~-v~~~~~~~~l~~~~~d-g--~v~i~~~~~~  196 (381)
                      .+.+++|+|  +|+++++++.|+.+++|++. ++.....+..+...+.. +.|+|+|+.++.++.+ +  ...+|.    
T Consensus       311 ~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~----  386 (706)
T 2z3z_A          311 PLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYC----  386 (706)
T ss_dssp             CCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEE----
T ss_pred             ccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEE----
Confidence            246789999  99999999999999999886 66667777777777876 7999999987766554 3  244433    


Q ss_pred             ceEEEecCCCEEEEEecCceeecccccCCccccccCCceEEeeehHHH----HHhccCCCcC
Q psy4650         197 PAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSVHVT----IKYRLDISDS  254 (381)
Q Consensus       197 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~d~----~~~~~d~~~~  254 (381)
                          ||..++... .+..      ..+.. .+.|+|||+.+++.....    ..+.|++...
T Consensus       387 ----~d~~~~~~~-~l~~------~~~~~-~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~  436 (706)
T 2z3z_A          387 ----IDIKGGKTK-DLTP------ESGMH-RTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKG  436 (706)
T ss_dssp             ----EETTCCCCE-ESCC------SSSEE-EEEECTTSSEEEEEEECSSCSCEEEEEESSSC
T ss_pred             ----EEcCCCCce-eccC------CCceE-EEEECCCCCEEEEEecCCCCCcEEEEEECCCC
Confidence                666555421 1111      01111 257889998887664332    3566776543

>3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex, ATP-binding, chaperone, nucleotide-BIND phosphoprotein, stress response; HET: ADP; 1.30A {Homo sapiens} PDB: 4fsv_A* 1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A* 1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A* 3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* ...

Probab=99.34  E-value=2.3e-14  Score=131.51  Aligned_cols=110  Identities=25%  Similarity=0.407  Sum_probs=98.9

Q ss_pred             HHHhccCCCcChhHHHHHHHHHhhhhhhccccceeeEEEecccCCcccccccChHHHHHHHHHHhhhhhhhhHhhhcccc
Q psy4650         244 TIKYRLDISDSHRSVAKLRAAAETCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIGGLLTSFVQPCMHVLSTLQ  323 (381)
Q Consensus       244 ~~~~~~d~~~~~~~~~~l~~~~e~ak~~lS~~~~~~i~~~~l~~g~~~~~~itr~~fe~l~~~l~~~~~~~~~~~Ls~~~  323 (381)
                      ...+..++..+++.+.+|+.++|++|+.||......+.++.+++|.++...++|++|++++.+++.++.++++++|... 
T Consensus       267 ~~~~~~~~~~~~~~~~~l~~~ae~~K~~ls~~~~~~~~~~~~~~g~~~~~~i~r~~~~~~~~~~~~~i~~~i~~~l~~~-  345 (404)
T 3i33_A          267 KRKHKKDIGPNKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGVDFYTSITRARFEELNADLFRGTLEPVEKALRDA-  345 (404)
T ss_dssp             HHHHSCCCTTCHHHHHHHHHHHHHHHHHTTTSSEEEEEEEEEETTEEEEEEEEHHHHHHHTHHHHHHTHHHHHHHHHHH-
T ss_pred             HHHhCCCcCCCHHHHHHHHHHHHHHHHhCCcCcceEEEEeeccCCceeEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHc-
Confidence            4455667777889999999999999999999999999999999999999999999999999999999999999999873 


Q ss_pred             ceeeEeeccccCcceEEeecHHHHHHHHHHHHH
Q psy4650         324 SSNVFVESLYDGLDFHHNVSRARFESLIGGLLT  356 (381)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~  356 (381)
                        .+....+..++++||+.+.|.+++++++.|+
T Consensus       346 --~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~~  376 (404)
T 3i33_A          346 --KLDKGQIQEIVLVGGSTRIPKIQKLLQDFFN  376 (404)
T ss_dssp             --TCCGGGCCEEEEESGGGGCHHHHHHHHHHTT
T ss_pred             --CCCHhhCCEEEEECCccccHHHHHHHHHHcC
Confidence              4445667788899999999999999999993

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.33  E-value=3.7e-11  Score=108.58  Aligned_cols=205  Identities=7%  Similarity=-0.023  Sum_probs=126.9

Q ss_pred             cceeeeecCCCceEEEEEecCCeEEEecCC-CccceeeEeeccccccEEEEEeeeCCCccEEEEEc-------------C
Q psy4650          35 TKVDITTNKDMIEYKISYQESSRVKAFNPI-QVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGA-------------D  100 (381)
Q Consensus        35 ~~~~i~~~~~~~~~~~s~~~d~~v~i~~~~-~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~-------------~  100 (381)
                      .+..+..++++ .++++++.+ .+.+|++. ......+.....+ +...+++|+|++..-++++++             .
T Consensus        41 ~~~~~a~spdg-~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~  117 (365)
T 1jof_A           41 PISWMTFDHER-KNIYGAAMK-KWSSFAVKSPTEIVHEASHPIG-GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKF  117 (365)
T ss_dssp             CCSEEEECTTS-SEEEEEEBT-EEEEEEEEETTEEEEEEEEECC-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSS
T ss_pred             CCcEEEECCCC-CEEEEEccc-eEEEEEECCCCCEEEeeEeecC-CCCccEEECCCCCEEEEEEecCCcceeccceeecC
Confidence            35567677764 467777777 99999985 2211111111111 234568899987621344553             6


Q ss_pred             CCeEEEEECC-CCeEEEEec----cCCCCEEEEEEecCCCEEEEEeC-CCCEEEEeCC-CCeee--EEEec--CCcceEE
Q psy4650         101 DRLVKIWDYQ-NKTCVQTLE----GHGQNISAVCFHPELPIVITGSE-DGSVRVWHSG-THRLE--ISLTY--GLERVWT  169 (381)
Q Consensus       101 d~~v~vwd~~-~~~~~~~~~----~~~~~v~~~~~~p~~~~l~s~~~-d~~i~vwd~~-~~~~~--~~~~~--~~~~v~~  169 (381)
                      ++++.+|++. .+.....+.    .+...+.+++|+|+|++++++.. ++.|.+||+. +|+..  ..+..  +...+..
T Consensus       118 ~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~  197 (365)
T 1jof_A          118 AGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRW  197 (365)
T ss_dssp             CCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEE
T ss_pred             CceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCE
Confidence            8999999997 455443333    24567899999999998877654 6799999998 77653  23332  3567899


Q ss_pred             EEEcCCCCEEEEEeC-CCeEEEEecCCCceEEEecCCCEEEE---EecCceeeccccc---------CCcccc-ccCCce
Q psy4650         170 ISSLKGSNNVAIGYD-EGSVLLKVGREEPAVSMDVNGCKIIW---ARHSEVQQANLKT---------MPEVFE-NITAGV  235 (381)
Q Consensus       170 v~~~~~~~~l~~~~~-dg~v~i~~~~~~~~~~~d~~~~~~~~---~~~~~~~~~~~~~---------~~~~~~-~~~dg~  235 (381)
                      ++|+|+|+++++++. ++.+.+|.        +|..++....   ....-  .....+         ....++ ++|||+
T Consensus       198 ~~~spdg~~l~v~~~~~~~v~v~~--------~~~~~g~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~i~~~spdG~  267 (365)
T 1jof_A          198 VAMHPTGNYLYALMEAGNRICEYV--------IDPATHMPVYTHHSFPLI--PPGIPDRDPETGKGLYRADVCALTFSGK  267 (365)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEE--------ECTTTCCEEEEEEEEESS--CTTCCCBCTTTSSBSEEEEEEEECTTSS
T ss_pred             eEECCCCCEEEEEECCCCeEEEEE--------EeCCCCcEEEccceEEcC--CCCcCCcccccccccccccEEEECCCCC
Confidence            999999998887764 68888854        4444454321   11100  000001         122267 899999


Q ss_pred             EEeeehHHH------HHhccCCC
Q psy4650         236 VLTLSVHVT------IKYRLDIS  252 (381)
Q Consensus       236 ~l~~~~~d~------~~~~~d~~  252 (381)
                      +++++....      ....|++.
T Consensus       268 ~l~v~~~~~~~~~~~~i~v~~~~  290 (365)
T 1jof_A          268 YMFASSRANKFELQGYIAGFKLR  290 (365)
T ss_dssp             EEEEEEEESSTTSCCEEEEEEEC
T ss_pred             EEEEECCCCCCCCCCeEEEEEEC
Confidence            887665432      45566653

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.29  E-value=1.3e-10  Score=100.52  Aligned_cols=181  Identities=9%  Similarity=0.026  Sum_probs=135.8

Q ss_pred             ceEEEEEecCCeEEEecCCCccceeeEeecccc-ccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEEEeccCC-C
Q psy4650          46 IEYKISYQESSRVKAFNPIQVATLILKTLYGHE-KGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHG-Q  123 (381)
Q Consensus        46 ~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~-~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~-~  123 (381)
                      ..++++++.++.|.+||..+  ...+.++..+. ..+.++.++|+|+  +++  +.++.|..||. +++.+..+..+. .
T Consensus         5 ~~~lv~~~~~~~v~~~d~~t--G~~~w~~~~~~~~~~~~~~~~pdG~--ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~   77 (276)
T 3no2_A            5 QHLLVGGSGWNKIAIINKDT--KEIVWEYPLEKGWECNSVAATKAGE--ILF--SYSKGAKMITR-DGRELWNIAAPAGC   77 (276)
T ss_dssp             CEEEEECTTCSEEEEEETTT--TEEEEEEECCTTCCCCEEEECTTSC--EEE--ECBSEEEEECT-TSCEEEEEECCTTC
T ss_pred             CcEEEeeCCCCEEEEEECCC--CeEEEEeCCCccCCCcCeEECCCCC--EEE--eCCCCEEEECC-CCCEEEEEcCCCCc
Confidence            57899999999999999864  55667777765 4788999999886  666  45788999999 788888888653 4


Q ss_pred             CEEEEEEecCCCEEEEEeC-CCCEEEEeCCCCeeeEEEecC------CcceEEEEEcCCCCEEEEEeCCCeEEEEecCCC
Q psy4650         124 NISAVCFHPELPIVITGSE-DGSVRVWHSGTHRLEISLTYG------LERVWTISSLKGSNNVAIGYDEGSVLLKVGREE  196 (381)
Q Consensus       124 ~v~~~~~~p~~~~l~s~~~-d~~i~vwd~~~~~~~~~~~~~------~~~v~~v~~~~~~~~l~~~~~dg~v~i~~~~~~  196 (381)
                      .+.++.+.|+|..+++.+. ++.+..+|. +|+.+..+...      ......+...++|.++++.+.++.+..      
T Consensus        78 ~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~------  150 (276)
T 3no2_A           78 EMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVRE------  150 (276)
T ss_dssp             EEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEE------
T ss_pred             cccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEE------
Confidence            7889999999999998877 777888886 67777766522      123445677889999998888888888      


Q ss_pred             ceEEEecCCCEEEEEecCceeecccccCCccccccCCceEEeeehHHHHHhccCCC
Q psy4650         197 PAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSVHVTIKYRLDIS  252 (381)
Q Consensus       197 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~d~~~~~~d~~  252 (381)
                          ||.. |+.+|.........   +    ....++|..++......+...++..
T Consensus       151 ----~d~~-G~~~w~~~~~~~~~---~----~~~~~~g~~~v~~~~~~~v~~~d~~  194 (276)
T 3no2_A          151 ----IAPN-GQLLNSVKLSGTPF---S----SAFLDNGDCLVACGDAHCFVQLNLE  194 (276)
T ss_dssp             ----ECTT-SCEEEEEECSSCCC---E----EEECTTSCEEEECBTTSEEEEECTT
T ss_pred             ----ECCC-CCEEEEEECCCCcc---c----eeEcCCCCEEEEeCCCCeEEEEeCc
Confidence                9987 88999876542111   1    2334677777777666556566654

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.27  E-value=3.6e-10  Score=102.06  Aligned_cols=201  Identities=7%  Similarity=-0.028  Sum_probs=125.9

Q ss_pred             ceeeeecCCCce-EEEEEe-------------cCCeEEEecCCCccceeeEeec----cccccEEEEEeeeCCCccEEEE
Q psy4650          36 KVDITTNKDMIE-YKISYQ-------------ESSRVKAFNPIQVATLILKTLY----GHEKGVNCVDYYHGGDKPYLIS   97 (381)
Q Consensus        36 ~~~i~~~~~~~~-~~~s~~-------------~d~~v~i~~~~~~~~~~~~~l~----~h~~~v~~~~~~~~~~~~~l~s   97 (381)
                      +..+...+++.. ++++++             .++++.+|++... ......+.    .+...+.+++|+|+|.  ++++
T Consensus        85 ~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~spdG~--~l~~  161 (365)
T 1jof_A           85 PRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSET-GKLEKNVQNYEYQENTGIHGMVFDPTET--YLYS  161 (365)
T ss_dssp             GGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTT-CCEEEEEEEEECCTTCCEEEEEECTTSS--EEEE
T ss_pred             CccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCC-CcCcceEeeEEeCCCCcceEEEECCCCC--EEEE
Confidence            344666776553 455553             6889999998531 12222222    3556899999999887  5555


Q ss_pred             E-cCCCeEEEEECC-CCeEE--EEec--cCCCCEEEEEEecCCCEEEEEeC-CCCEEEEeCC--CCeeeE---EEec---
Q psy4650          98 G-ADDRLVKIWDYQ-NKTCV--QTLE--GHGQNISAVCFHPELPIVITGSE-DGSVRVWHSG--THRLEI---SLTY---  162 (381)
Q Consensus        98 ~-~~d~~v~vwd~~-~~~~~--~~~~--~~~~~v~~~~~~p~~~~l~s~~~-d~~i~vwd~~--~~~~~~---~~~~---  162 (381)
                      + ..++.|.+|++. +++..  ..+.  .|...+..++|+|+|+.++.++. ++.+.+|++.  +|+...   .+..   
T Consensus       162 ~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~  241 (365)
T 1jof_A          162 ADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPP  241 (365)
T ss_dssp             EETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCT
T ss_pred             EcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCC
Confidence            4 457899999998 67542  3343  24567899999999998887765 7899999765  565432   2221   


Q ss_pred             ----CCc------ceEEEE-EcCCCCEEEEEeCCC------eEEEEecCCCceEEEecC-CCEEEEEecCceeecccccC
Q psy4650         163 ----GLE------RVWTIS-SLKGSNNVAIGYDEG------SVLLKVGREEPAVSMDVN-GCKIIWARHSEVQQANLKTM  224 (381)
Q Consensus       163 ----~~~------~v~~v~-~~~~~~~l~~~~~dg------~v~i~~~~~~~~~~~d~~-~~~~~~~~~~~~~~~~~~~~  224 (381)
                          +..      .+..++ |+|+|++|+++..+.      .+.+          |+.. ++.+......   .......
T Consensus       242 ~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v----------~~~~~~g~~~~~~~~---~~~~~~~  308 (365)
T 1jof_A          242 GIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAG----------FKLRDCGSIEKQLFL---SPTPTSG  308 (365)
T ss_dssp             TCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEE----------EEECTTSCEEEEEEE---EECSSCC
T ss_pred             CcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEE----------EEECCCCCEEEeeee---eecCCCC
Confidence                111      588999 999999887765432      6777          5553 3443221100   0001111


Q ss_pred             CccccccC---CceEEeeehHH-HHHhccCCC
Q psy4650         225 PEVFENIT---AGVVLTLSVHV-TIKYRLDIS  252 (381)
Q Consensus       225 ~~~~~~~~---dg~~l~~~~~d-~~~~~~d~~  252 (381)
                      ...++++|   ||++++++..+ +....|++.
T Consensus       309 ~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~  340 (365)
T 1jof_A          309 GHSNAVSPCPWSDEWMAITDDQEGWLEIYRWK  340 (365)
T ss_dssp             TTCCCEEECTTCTTEEEEECSSSCEEEEEEEE
T ss_pred             cccceecCCCcCCCEEEEEEcCCCeEEEEEEc
Confidence            22357788   89999888764 566666654

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.27  E-value=9.1e-11  Score=114.56  Aligned_cols=194  Identities=10%  Similarity=-0.034  Sum_probs=125.6

Q ss_pred             CCCce-EEEEEecCCeEEEecCCCccc-eeeEeecc-----ccccEEEEEeeeCCCccEEEEEcCC----------CeEE
Q psy4650          43 KDMIE-YKISYQESSRVKAFNPIQVAT-LILKTLYG-----HEKGVNCVDYYHGGDKPYLISGADD----------RLVK  105 (381)
Q Consensus        43 ~~~~~-~~~s~~~d~~v~i~~~~~~~~-~~~~~l~~-----h~~~v~~~~~~~~~~~~~l~s~~~d----------~~v~  105 (381)
                      |++.. +.++...+..|.+++... .. .....+..     |...+.+++|+|+|.  .|+.++.+          ..|.
T Consensus        88 PDg~~~la~~~~~~~~l~~~~~~~-~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~--~l~~~~~~~~~~~~~~~~~~i~  164 (662)
T 3azo_A           88 PAGGPLLVFTHFGDQRLYAFEPDA-PGGAVPRPLTPVSAVGGGLRWADPVLLPERG--EVWCMAEEFTGEGPSDVRRFLA  164 (662)
T ss_dssp             SSSSCEEEEEBTTTCCEEEECTTS-TTCCCCEECSCCCCSTTCEEEEEEEEETTTT--EEEEEEEEECSSSTTCEEEEEE
T ss_pred             cCCCeEEEEEECCCCeEEEEcCCC-CCCCCCEeccCCccCCCCccccCcEECCCCC--EEEEEEecccCCCCCCceeEEE
Confidence            66555 444544466777777640 01 22344555     677899999999987  68777766          5899


Q ss_pred             EEECCC------CeEEEEec-cCCCCEEEEEEecCCCEEEEEeCC--------CCEEEEeCC-CC---eeeEEEecCCcc
Q psy4650         106 IWDYQN------KTCVQTLE-GHGQNISAVCFHPELPIVITGSED--------GSVRVWHSG-TH---RLEISLTYGLER  166 (381)
Q Consensus       106 vwd~~~------~~~~~~~~-~~~~~v~~~~~~p~~~~l~s~~~d--------~~i~vwd~~-~~---~~~~~~~~~~~~  166 (381)
                      +||+.+      +.. ..+. .+...+..++|+|+|+.|+.++.+        ..|.+||+. +|   ........+...
T Consensus       165 ~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~  243 (662)
T 3azo_A          165 AVPLDGSAAADRSAV-RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEA  243 (662)
T ss_dssp             EEETTSTTTTCGGGS-EESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBC
T ss_pred             EEECCCCccccCCce-eEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCce
Confidence            999988      554 3444 555678889999999999877754        379999998 57   444444455788


Q ss_pred             eEEEEEcCCCCEEEEEeCCCeEEEEecCCCceEEEecCCCEEEEEecCceeecc--cccCCccccccCCceEEeeehHHH
Q psy4650         167 VWTISSLKGSNNVAIGYDEGSVLLKVGREEPAVSMDVNGCKIIWARHSEVQQAN--LKTMPEVFENITAGVVLTLSVHVT  244 (381)
Q Consensus       167 v~~v~~~~~~~~l~~~~~dg~v~i~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~dg~~l~~~~~d~  244 (381)
                      +..+.|+|+|++++++..+|...+|.        ||..++....-...+.....  ...-...+.++|++.+++++.. +
T Consensus       244 ~~~~~~spdg~l~~~~~~~~~~~l~~--------~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~  314 (662)
T 3azo_A          244 IAQAEWAPDGSLIVATDRTGWWNLHR--------VDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-G  314 (662)
T ss_dssp             EEEEEECTTSCEEEEECTTSSCEEEE--------ECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-S
T ss_pred             EcceEECCCCeEEEEECCCCCeEEEE--------EECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-C
Confidence            99999999999888888888555543        66655543221111100000  0000011466778888887766 5


Q ss_pred             HHhcc
Q psy4650         245 IKYRL  249 (381)
Q Consensus       245 ~~~~~  249 (381)
                      ...+|
T Consensus       315 ~~~l~  319 (662)
T 3azo_A          315 AAVLG  319 (662)
T ss_dssp             SCEEE
T ss_pred             ccEEE
Confidence            55555

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.23  E-value=4.6e-10  Score=99.87  Aligned_cols=206  Identities=14%  Similarity=0.133  Sum_probs=138.9

Q ss_pred             cceeeeecCCCceEEEEEecCCeEEEecCCCccceeeEee---------ccccccEEEEEeee-CCCccEEEEEc-CCCe
Q psy4650          35 TKVDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTL---------YGHEKGVNCVDYYH-GGDKPYLISGA-DDRL  103 (381)
Q Consensus        35 ~~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l---------~~h~~~v~~~~~~~-~~~~~~l~s~~-~d~~  103 (381)
                      .|..+...+++. +.++...++.|++|++... ...+..+         .++.....+++++| ++.  ++++.+ .++.
T Consensus        92 ~p~gia~d~~g~-l~v~d~~~~~v~~~~~~g~-~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~--lyv~d~~~~~~  167 (329)
T 3fvz_A           92 LPHGLSIDTDGN-YWVTDVALHQVFKLDPHSK-EGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGA--VFVSDGYCNSR  167 (329)
T ss_dssp             SEEEEEECTTSC-EEEEETTTTEEEEECTTCS-SCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCC--EEEEECSSCCE
T ss_pred             CceEEEECCCCC-EEEEECCCCEEEEEeCCCC-eEEEEEecccCCCCCCccccCCCcEEEEeCCCCe--EEEEeCCCCCe
Confidence            577788887655 7778888899999998532 1134444         34556789999998 555  677776 6999


Q ss_pred             EEEEECCCCeEEEEeccCC----------CCEEEEEEecC-CCEEEEEeCCCCEEEEeCCCCeeeEEEe--cCCcceEEE
Q psy4650         104 VKIWDYQNKTCVQTLEGHG----------QNISAVCFHPE-LPIVITGSEDGSVRVWHSGTHRLEISLT--YGLERVWTI  170 (381)
Q Consensus       104 v~vwd~~~~~~~~~~~~~~----------~~v~~~~~~p~-~~~l~s~~~d~~i~vwd~~~~~~~~~~~--~~~~~v~~v  170 (381)
                      |++|+ ..+..+..+....          .....++++|+ +.++++...++.|++||..+|+.+..+.  .+...+.++
T Consensus       168 I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~  246 (329)
T 3fvz_A          168 IVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAI  246 (329)
T ss_dssp             EEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEE
T ss_pred             EEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCccee
Confidence            99999 5566666664222          23789999998 6677777778999999999898888874  345678899


Q ss_pred             EEcCCCCEEEEEeCCCeEEEEecCCCceEEEecCCCEEEEEecCceeecccccCCccccccCCceEEeeehHHHHHhccC
Q psy4650         171 SSLKGSNNVAIGYDEGSVLLKVGREEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSVHVTIKYRLD  250 (381)
Q Consensus       171 ~~~~~~~~l~~~~~dg~v~i~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~d~~~~~~d  250 (381)
                      +++| +..++..   |.+.+.+.....+..|+..++..+.......   ........++++|+|..+++...+.++..|+
T Consensus       247 ~~~p-g~~~~~~---g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~---~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~  319 (329)
T 3fvz_A          247 SYIP-GFLFAVN---GKPYFGDQEPVQGFVMNFSSGEIIDVFKPVR---KHFDMPHDIVASEDGTVYIGDAHTNTVWKFT  319 (329)
T ss_dssp             EEET-TEEEEEE---CCCCTTCSCCCCEEEEETTTCCEEEEECCSS---SCCSSEEEEEECTTSEEEEEESSSCCEEEEE
T ss_pred             eecC-CEEEEeC---CCEEeccCCCcEEEEEEcCCCeEEEEEcCCC---CccCCeeEEEECCCCCEEEEECCCCEEEEEe
Confidence            9999 4433332   2232223334455558877777665543210   1112222367789997777777777777776


Q ss_pred             CC
Q psy4650         251 IS  252 (381)
Q Consensus       251 ~~  252 (381)
                      +.
T Consensus       320 ~~  321 (329)
T 3fvz_A          320 LT  321 (329)
T ss_dssp             EE
T ss_pred             CC
Confidence            54

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.20  E-value=4.9e-11  Score=117.68  Aligned_cols=141  Identities=6%  Similarity=-0.022  Sum_probs=98.5

Q ss_pred             ceeeeecCCCceEEEEEec---------CCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEE
Q psy4650          36 KVDITTNKDMIEYKISYQE---------SSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKI  106 (381)
Q Consensus        36 ~~~i~~~~~~~~~~~s~~~---------d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~v  106 (381)
                      ...+..++++. +++.++.         ++++++||+..........+   ...+.+++|||+|.  .|+.++ ++.|++
T Consensus        62 ~~~~~~SpDg~-~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l---~~~~~~~~~SPDG~--~la~~~-~~~i~~  134 (719)
T 1z68_A           62 ASNYGLSPDRQ-FVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNEL---PRPIQYLCWSPVGS--KLAYVY-QNNIYL  134 (719)
T ss_dssp             CSEEEECTTSS-EEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCC---CSSBCCEEECSSTT--CEEEEE-TTEEEE
T ss_pred             eeeEEECCCCC-eEEEEecCceeEEeecceEEEEEECCCCccccceec---CcccccceECCCCC--EEEEEE-CCeEEE
Confidence            45677778755 5555544         68999999864322000222   25688999999998  577765 789999


Q ss_pred             EECCCCeEEEEe-ccCCCCE-----------------EEEEEecCCCEEEEEeCCC------------------------
Q psy4650         107 WDYQNKTCVQTL-EGHGQNI-----------------SAVCFHPELPIVITGSEDG------------------------  144 (381)
Q Consensus       107 wd~~~~~~~~~~-~~~~~~v-----------------~~~~~~p~~~~l~s~~~d~------------------------  144 (381)
                      |+..++...... .++...|                 .+++|+|+|+.|++++.|.                        
T Consensus       135 ~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~y  214 (719)
T 1z68_A          135 KQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPY  214 (719)
T ss_dssp             ESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEEC
T ss_pred             EeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecC
Confidence            999888765433 2333322                 4899999999999887552                        


Q ss_pred             ----------CEEEEeCCCCeee--EE------EecCCcceEEEEEcCCCCEEEEEe
Q psy4650         145 ----------SVRVWHSGTHRLE--IS------LTYGLERVWTISSLKGSNNVAIGY  183 (381)
Q Consensus       145 ----------~i~vwd~~~~~~~--~~------~~~~~~~v~~v~~~~~~~~l~~~~  183 (381)
                                .|++||+.+++..  ..      +.++...+.+++|+|+++++++..
T Consensus       215 p~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~  271 (719)
T 1z68_A          215 PKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWL  271 (719)
T ss_dssp             CBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEE
T ss_pred             CCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEe
Confidence                      7889999988753  11      234677899999999987766643

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.20  E-value=5e-09  Score=90.92  Aligned_cols=195  Identities=10%  Similarity=0.070  Sum_probs=130.4

Q ss_pred             cceeeeecCCCceEEEEEe-cCCeEEEecCCCccceeeEeec-cccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCC
Q psy4650          35 TKVDITTNKDMIEYKISYQ-ESSRVKAFNPIQVATLILKTLY-GHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNK  112 (381)
Q Consensus        35 ~~~~i~~~~~~~~~~~s~~-~d~~v~i~~~~~~~~~~~~~l~-~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~  112 (381)
                      .+..+...+..+.+.++.. .++.|.+|+..   ...+..+. ++...+.+++++|++.  ++++...++.|.+||.. +
T Consensus        78 ~p~~i~~~~~~g~l~v~~~~~~~~i~~~d~~---g~~~~~~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~i~~~~~~-g  151 (286)
T 1q7f_A           78 YPNRVAVVRNSGDIIVTERSPTHQIQIYNQY---GQFVRKFGATILQHPRGVTVDNKGR--IIVVECKVMRVIIFDQN-G  151 (286)
T ss_dssp             SEEEEEEETTTTEEEEEECGGGCEEEEECTT---SCEEEEECTTTCSCEEEEEECTTSC--EEEEETTTTEEEEECTT-S
T ss_pred             CceEEEEEcCCCeEEEEcCCCCCEEEEECCC---CcEEEEecCccCCCceEEEEeCCCC--EEEEECCCCEEEEEcCC-C
Confidence            4566666333345555554 37899999963   33344443 3456789999999775  77788889999999964 5


Q ss_pred             eEEEEec--cCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEecC--CcceEEEEEcCCCCEEEEEeCCC-e
Q psy4650         113 TCVQTLE--GHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYG--LERVWTISSLKGSNNVAIGYDEG-S  187 (381)
Q Consensus       113 ~~~~~~~--~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~--~~~v~~v~~~~~~~~l~~~~~dg-~  187 (381)
                      ..+..+.  ++...+.+++++|++..+++...++.|.+||.. +..+..+...  ...+..++++++|.++++...++ .
T Consensus       152 ~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~  230 (286)
T 1q7f_A          152 NVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFN  230 (286)
T ss_dssp             CEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCE
T ss_pred             CEEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEE
Confidence            5555553  344568999999999988887778999999974 5555555433  35788999999999888887775 8


Q ss_pred             EEEEecCCCceEEEecCCCEEEEEecCceeecccccCCccccccCCceEEeeehHHHHHhccCCC
Q psy4650         188 VLLKVGREEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSVHVTIKYRLDIS  252 (381)
Q Consensus       188 v~i~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~d~~~~~~d~~  252 (381)
                      +.+          ||.. +..+........    ......+++.|+|..+++ ..+.++..|+..
T Consensus       231 i~~----------~~~~-g~~~~~~~~~~~----~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~  279 (286)
T 1q7f_A          231 LTI----------FTQD-GQLISALESKVK----HAQCFDVALMDDGSVVLA-SKDYRLYIYRYV  279 (286)
T ss_dssp             EEE----------ECTT-SCEEEEEEESSC----CSCEEEEEEETTTEEEEE-ETTTEEEEEECS
T ss_pred             EEE----------ECCC-CCEEEEEcccCC----CCcceeEEECCCCcEEEE-CCCCeEEEEEcc
Confidence            888          6643 333332221110    001112567789986666 456667777654

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.19  E-value=1.4e-10  Score=114.82  Aligned_cols=147  Identities=14%  Similarity=0.006  Sum_probs=106.5

Q ss_pred             ceeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeecccccc-----EEEEEeeeCCCccEEEEEcCC---------
Q psy4650          36 KVDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKG-----VNCVDYYHGGDKPYLISGADD---------  101 (381)
Q Consensus        36 ~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~-----v~~~~~~~~~~~~~l~s~~~d---------  101 (381)
                      .+.+.+.+++ .+++++  |++|++|++....  ....+.+|...     ..++.|||+|.  +|+.++.+         
T Consensus        19 ~~~~~w~~dg-~~~~~~--~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Spdg~--~l~~~~~~~~~~r~~~~   91 (740)
T 4a5s_A           19 LYSLRWISDH-EYLYKQ--ENNILVFNAEYGN--SSVFLENSTFDEFGHSINDYSISPDGQ--FILLEYNYVKQWRHSYT   91 (740)
T ss_dssp             CCCEEECSSS-EEEEEE--TTEEEEEETTTCC--EEEEECTTTTTTCCSCCCEEEECTTSS--EEEEEEEEEECSSSCEE
T ss_pred             ccccEECCCC-cEEEEc--CCcEEEEECCCCc--eEEEEechhhhhhcccccceEECCCCC--EEEEEECCeeeEEEccc
Confidence            4567777774 688775  8999999997543  33446666533     24578899887  67777765         


Q ss_pred             CeEEEEECCCCeEEEEeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEE-ecCCcce-------------
Q psy4650         102 RLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISL-TYGLERV-------------  167 (381)
Q Consensus       102 ~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~-~~~~~~v-------------  167 (381)
                      +.+.+||+.+++.. .+..|.+.+...+|+|+|+.|+.+. ++.|.+||+.++...... .++...+             
T Consensus        92 ~~~~~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~  169 (740)
T 4a5s_A           92 ASYDIYDLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEV  169 (740)
T ss_dssp             EEEEEEETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHT
T ss_pred             eEEEEEECCCCcEE-EcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchh
Confidence            56679999998854 4666778899999999999998885 689999999888754321 2222222             


Q ss_pred             ----EEEEEcCCCCEEEEEeCCCe-EEEE
Q psy4650         168 ----WTISSLKGSNNVAIGYDEGS-VLLK  191 (381)
Q Consensus       168 ----~~v~~~~~~~~l~~~~~dg~-v~i~  191 (381)
                          ..+.|+|+|+.|+.++.|.. +.+|
T Consensus       170 ~~~~~~~~wSpDg~~la~~~~d~~~v~~~  198 (740)
T 4a5s_A          170 FSAYSALWWSPNGTFLAYAQFNDTEVPLI  198 (740)
T ss_dssp             SSSSBCEEECTTSSEEEEEEEECTTCCEE
T ss_pred             cCCCcceEECCCCCEEEEEEEcccCCceE
Confidence                35899999999998875443 5444

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.17  E-value=6e-10  Score=100.25  Aligned_cols=141  Identities=8%  Similarity=-0.016  Sum_probs=103.0

Q ss_pred             cceeeeecCCCceEEEEEecCCeEEEecCCCcc---------ceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEE
Q psy4650          35 TKVDITTNKDMIEYKISYQESSRVKAFNPIQVA---------TLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVK  105 (381)
Q Consensus        35 ~~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~---------~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~  105 (381)
                      ..+.+...+..+ ++++|+.+ .+.+|++....         ..... ...+.+ |+.++|  ++.  +|+.+ .++.|+
T Consensus        39 ~~nlLais~~~g-ll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~-~~~lp~-V~~l~f--d~~--~L~v~-~~~~l~  109 (388)
T 1xip_A           39 SLQNLDISNSKS-LFVAASGS-KAVVGELQLLRDHITSDSTPLTFKW-EKEIPD-VIFVCF--HGD--QVLVS-TRNALY  109 (388)
T ss_dssp             CCBCEEEETTTT-EEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSE-EEECTT-EEEEEE--ETT--EEEEE-ESSEEE
T ss_pred             cccEEEEcCCCC-EEEEeCCC-EEEEEEhhHhhhhhccccccccceE-EeeCCC-eeEEEE--CCC--EEEEE-cCCcEE
Confidence            344555555544 67777776 56669864322         11111 224566 999999  555  78887 889999


Q ss_pred             EEECCCCeEEEEeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCC
Q psy4650         106 IWDYQNKTCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDE  185 (381)
Q Consensus       106 vwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d  185 (381)
                      +||+.+.........|..++.++.+.+.  .++.+..||.+.+||+..+....    +...|++++|+|+|  ++.|..|
T Consensus       110 v~dv~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG--~~vg~~d  181 (388)
T 1xip_A          110 SLDLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ--LAVLLKD  181 (388)
T ss_dssp             EEESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSSE--EEEEETT
T ss_pred             EEEchhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCCc--eEEEEcC
Confidence            9999877666666677778888776554  38889999999999999877643    34689999999999  6789999


Q ss_pred             CeEEEEe
Q psy4650         186 GSVLLKV  192 (381)
Q Consensus       186 g~v~i~~  192 (381)
                      |.+++|.
T Consensus       182 g~i~~~~  188 (388)
T 1xip_A          182 RSFQSFA  188 (388)
T ss_dssp             SCEEEEE
T ss_pred             CcEEEEc
Confidence            9999943

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.16  E-value=1.8e-09  Score=93.70  Aligned_cols=196  Identities=12%  Similarity=0.062  Sum_probs=131.6

Q ss_pred             hcceeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeec------cccccEEEEEee-eCCCccEEEEEc-CCCeEE
Q psy4650          34 ETKVDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLY------GHEKGVNCVDYY-HGGDKPYLISGA-DDRLVK  105 (381)
Q Consensus        34 ~~~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~------~h~~~v~~~~~~-~~~~~~~l~s~~-~d~~v~  105 (381)
                      ..|..+...+++ .+.++...++.|.+|++..   ..+..+.      +|...+.++++. +++.  ++++.. .++.|.
T Consensus        30 ~~p~~v~~~~~g-~l~v~~~~~~~i~~~d~~g---~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~--l~v~~~~~~~~i~  103 (286)
T 1q7f_A           30 TEPSGVAVNAQN-DIIVADTNNHRIQIFDKEG---RFKFQFGECGKRDSQLLYPNRVAVVRNSGD--IIVTERSPTHQIQ  103 (286)
T ss_dssp             SCEEEEEECTTC-CEEEEEGGGTEEEEECTTS---CEEEEECCBSSSTTCBSSEEEEEEETTTTE--EEEEECGGGCEEE
T ss_pred             CCCceEEECCCC-CEEEEECCCCEEEEECCCC---cEEEEecccCCCcccccCceEEEEEcCCCe--EEEEcCCCCCEEE
Confidence            457778877764 5777778889999999852   2333332      355678999995 4443  555553 389999


Q ss_pred             EEECCCCeEEEEecc-CCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEe--cCCcceEEEEEcCCCCEEEEE
Q psy4650         106 IWDYQNKTCVQTLEG-HGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLT--YGLERVWTISSLKGSNNVAIG  182 (381)
Q Consensus       106 vwd~~~~~~~~~~~~-~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~--~~~~~v~~v~~~~~~~~l~~~  182 (381)
                      +|| .++..+..+.. +...+.+++++|+|..+++...++.|.+||.. ++....+.  .+...+..++++|+|+++++.
T Consensus       104 ~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~  181 (286)
T 1q7f_A          104 IYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISD  181 (286)
T ss_dssp             EEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEE
T ss_pred             EEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEEE
Confidence            999 56666666643 34578999999999988887778999999964 55555554  344568999999999888877


Q ss_pred             eCCCeEEEEecCCCceEEEecCCCEEEEEecCceeecccccCCccccccCCceEEeeehHHH-HHhccCCC
Q psy4650         183 YDEGSVLLKVGREEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSVHVT-IKYRLDIS  252 (381)
Q Consensus       183 ~~dg~v~i~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~d~-~~~~~d~~  252 (381)
                      +.++.+.+          ||..+. .+.......   .+ .....++++++|.+++....+. .+..|+..
T Consensus       182 ~~~~~i~~----------~~~~g~-~~~~~~~~g---~~-~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~  237 (286)
T 1q7f_A          182 NRAHCVKV----------FNYEGQ-YLRQIGGEG---IT-NYPIGVGINSNGEILIADNHNNFNLTIFTQD  237 (286)
T ss_dssp             GGGTEEEE----------EETTCC-EEEEESCTT---TS-CSEEEEEECTTCCEEEEECSSSCEEEEECTT
T ss_pred             CCCCEEEE----------EcCCCC-EEEEEccCC---cc-CCCcEEEECCCCCEEEEeCCCCEEEEEECCC
Confidence            78888888          555332 232222110   00 1122256678887777766554 66777643

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.13  E-value=1.7e-10  Score=114.21  Aligned_cols=149  Identities=7%  Similarity=0.038  Sum_probs=105.2

Q ss_pred             cEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEEEeccCCCC-----EEEEEEecCCCEEEEEeCC---------CC
Q psy4650          80 GVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQN-----ISAVCFHPELPIVITGSED---------GS  145 (381)
Q Consensus        80 ~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~-----v~~~~~~p~~~~l~s~~~d---------~~  145 (381)
                      ...++.|+|++.  +++++  |++|++||+.+++....+.+|...     ...++|+|+|+.++.++.+         +.
T Consensus        18 ~~~~~~w~~dg~--~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~   93 (740)
T 4a5s_A           18 KLYSLRWISDHE--YLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTAS   93 (740)
T ss_dssp             CCCCEEECSSSE--EEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEE
T ss_pred             cccccEECCCCc--EEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceE
Confidence            456899999885  77776  999999999999988778777543     2347899999999988875         55


Q ss_pred             EEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCceEEEecCCCEEEEEecCceeeccc----
Q psy4650         146 VRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKVGREEPAVSMDVNGCKIIWARHSEVQQANL----  221 (381)
Q Consensus       146 i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~----  221 (381)
                      +.+||+.+++... +..+...+...+|+|+|+.+|.+. ++.+.+          |+..++....-.........+    
T Consensus        94 ~~~~d~~~~~~~~-l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~----------~~~~~~~~~~lt~~g~~~~~~~g~~  161 (740)
T 4a5s_A           94 YDIYDLNKRQLIT-EERIPNNTQWVTWSPVGHKLAYVW-NNDIYV----------KIEPNLPSYRITWTGKEDIIYNGIT  161 (740)
T ss_dssp             EEEEETTTTEECC-SSCCCTTEEEEEECSSTTCEEEEE-TTEEEE----------ESSTTSCCEECCSCCBTTTEEESBC
T ss_pred             EEEEECCCCcEEE-cccCCCcceeeEECCCCCEEEEEE-CCeEEE----------EECCCCceEEEcCCCCccceecCcc
Confidence            6799999998643 555667899999999999999885 678888          555444322111101000011    


Q ss_pred             --------ccCCccccccCCceEEeeehHHH
Q psy4650         222 --------KTMPEVFENITAGVVLTLSVHVT  244 (381)
Q Consensus       222 --------~~~~~~~~~~~dg~~l~~~~~d~  244 (381)
                              .+....+.|+|||+.|++...+.
T Consensus       162 ~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~  192 (740)
T 4a5s_A          162 DWVYEEEVFSAYSALWWSPNGTFLAYAQFND  192 (740)
T ss_dssp             CHHHHHHTSSSSBCEEECTTSSEEEEEEEEC
T ss_pred             cccccchhcCCCcceEECCCCCEEEEEEEcc
Confidence                    11122257999999999876544

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.13  E-value=8.5e-10  Score=100.13  Aligned_cols=201  Identities=7%  Similarity=-0.099  Sum_probs=124.8

Q ss_pred             eeecCCCceEEEEEecCCe--EEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEE
Q psy4650          39 ITTNKDMIEYKISYQESSR--VKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQ  116 (381)
Q Consensus        39 i~~~~~~~~~~~s~~~d~~--v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~  116 (381)
                      ..+.+++..+++....++.  +.+|++..  ........+|...+.++.|+|++.  .|+.++.++.+.+||+.+++...
T Consensus        41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~--g~~~~lt~~~~~~~~~~~~spdg~--~l~~~~~~~~l~~~d~~~g~~~~  116 (388)
T 3pe7_A           41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNT--QVATQLTEGRGDNTFGGFLSPDDD--ALFYVKDGRNLMRVDLATLEENV  116 (388)
T ss_dssp             CCBCTTSCEEEEEECTTSSCEEEEEETTT--CEEEECCCSSCBCSSSCEECTTSS--EEEEEETTTEEEEEETTTCCEEE
T ss_pred             ccCCCCCCEEEEEEcCCCCceEEEEeCCC--CceEEeeeCCCCCccceEEcCCCC--EEEEEeCCCeEEEEECCCCccee
Confidence            4567775545555444674  77778753  333344456666666788999887  78888889999999999998777


Q ss_pred             EeccCCCCEEEEE--EecCCCEEEEE----------------------eCCCCEEEEeCCCCeeeEEEecCCcceEEEEE
Q psy4650         117 TLEGHGQNISAVC--FHPELPIVITG----------------------SEDGSVRVWHSGTHRLEISLTYGLERVWTISS  172 (381)
Q Consensus       117 ~~~~~~~~v~~~~--~~p~~~~l~s~----------------------~~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~  172 (381)
                      .+..+...+....  ++|++..++..                      +.+..|.+||+.+++... +..+...+..+.|
T Consensus       117 ~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~-l~~~~~~~~~~~~  195 (388)
T 3pe7_A          117 VYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTV-ILQENQWLGHPIY  195 (388)
T ss_dssp             EEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEE-EEEESSCEEEEEE
T ss_pred             eeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEE-eecCCccccccEE
Confidence            7766666554444  48899887642                      234679999999986544 3345567899999


Q ss_pred             cC-CCCEEEEEeCCCeEEEEecCCCceEEEecCCCEEEEEecCceeecccccCCccccccCCceEEeeehHHH-----HH
Q psy4650         173 LK-GSNNVAIGYDEGSVLLKVGREEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSVHVT-----IK  246 (381)
Q Consensus       173 ~~-~~~~l~~~~~dg~v~i~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~d~-----~~  246 (381)
                      +| +|+.++.+..++.    ......+..+|..++.... +.....    ........|+|||+.+++.+...     ..
T Consensus       196 sp~dg~~l~~~~~~~~----~~~~~~l~~~d~~~~~~~~-l~~~~~----~~~~~~~~~spdg~~l~~~~~~~~~~~~~l  266 (388)
T 3pe7_A          196 RPYDDSTVAFCHEGPH----DLVDARMWLINEDGTNMRK-VKTHAE----GESCTHEFWVPDGSALVYVSYLKGSPDRFI  266 (388)
T ss_dssp             ETTEEEEEEEEECSCT----TTSSCSEEEEETTSCCCEE-SCCCCT----TEEEEEEEECTTSSCEEEEEEETTCCCEEE
T ss_pred             CCCCCCEEEEEEecCC----CCCcceEEEEeCCCCceEE-eeeCCC----CcccccceECCCCCEEEEEecCCCCCcceE
Confidence            99 9998888775320    0001122226654443211 111100    00001146889999886654322     25


Q ss_pred             hccCCCc
Q psy4650         247 YRLDISD  253 (381)
Q Consensus       247 ~~~d~~~  253 (381)
                      +.|++..
T Consensus       267 ~~~d~~~  273 (388)
T 3pe7_A          267 YSADPET  273 (388)
T ss_dssp             EEECTTT
T ss_pred             EEEecCC
Confidence            6677654

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.10  E-value=5.3e-09  Score=92.94  Aligned_cols=152  Identities=12%  Similarity=0.092  Sum_probs=115.0

Q ss_pred             cceeeeecCCCceEEEEEe-cCCeEEEecCCCccceeeEeec----------cccccEEEEEeeeCCCccEEEEEcCCCe
Q psy4650          35 TKVDITTNKDMIEYKISYQ-ESSRVKAFNPIQVATLILKTLY----------GHEKGVNCVDYYHGGDKPYLISGADDRL  103 (381)
Q Consensus        35 ~~~~i~~~~~~~~~~~s~~-~d~~v~i~~~~~~~~~~~~~l~----------~h~~~v~~~~~~~~~~~~~l~s~~~d~~  103 (381)
                      .|..+...++.+.+.++.+ .++.|++|++.   ...+..+.          ++.....+++++|++. .++++...++.
T Consensus       144 ~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~---g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g-~l~v~d~~~~~  219 (329)
T 3fvz_A          144 QPTDVAVEPSTGAVFVSDGYCNSRIVQFSPS---GKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLD-QLCVADRENGR  219 (329)
T ss_dssp             SEEEEEECTTTCCEEEEECSSCCEEEEECTT---SCEEEEECEECCSSSCCTTEESCEEEEEEETTTT-EEEEEETTTTE
T ss_pred             CCcEEEEeCCCCeEEEEeCCCCCeEEEEcCC---CCEEEEeccCCCCCCCCCcccCCCcEEEEECCCC-EEEEEECCCCE
Confidence            5778888884466777775 68999999964   33444443          2334589999999733 27788889999


Q ss_pred             EEEEECCCCeEEEEec--cCCCCEEEEEEecCCCEEEEE-------eCCCCEEEEeCCCCeeeEEEe---cCCcceEEEE
Q psy4650         104 VKIWDYQNKTCVQTLE--GHGQNISAVCFHPELPIVITG-------SEDGSVRVWHSGTHRLEISLT---YGLERVWTIS  171 (381)
Q Consensus       104 v~vwd~~~~~~~~~~~--~~~~~v~~~~~~p~~~~l~s~-------~~d~~i~vwd~~~~~~~~~~~---~~~~~v~~v~  171 (381)
                      |++|+..+++.+..+.  .+...+.+++|+| +..+.+.       ..+..+++||..+++.+..+.   .+...+..++
T Consensus       220 I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia  298 (329)
T 3fvz_A          220 IQCFKTDTKEFVREIKHASFGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIV  298 (329)
T ss_dssp             EEEEETTTCCEEEEECCTTTTTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEE
T ss_pred             EEEEECCCCcEEEEEeccccCCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEE
Confidence            9999999888888774  4566789999999 4433333       334589999999999888873   4666789999


Q ss_pred             EcCCCCEEEEEeCCCeEEEE
Q psy4650         172 SLKGSNNVAIGYDEGSVLLK  191 (381)
Q Consensus       172 ~~~~~~~l~~~~~dg~v~i~  191 (381)
                      ++|+|.++++...++.|++|
T Consensus       299 ~~~dG~lyvad~~~~~I~~~  318 (329)
T 3fvz_A          299 ASEDGTVYIGDAHTNTVWKF  318 (329)
T ss_dssp             ECTTSEEEEEESSSCCEEEE
T ss_pred             ECCCCCEEEEECCCCEEEEE
Confidence            99999888888888888883

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.07  E-value=1.3e-08  Score=87.96  Aligned_cols=184  Identities=9%  Similarity=0.032  Sum_probs=129.0

Q ss_pred             ceeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeecccc-ccEEEEEeeeCCCccEEEEEcC-CCeEEEEECCCCe
Q psy4650          36 KVDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHE-KGVNCVDYYHGGDKPYLISGAD-DRLVKIWDYQNKT  113 (381)
Q Consensus        36 ~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~-~~v~~~~~~~~~~~~~l~s~~~-d~~v~vwd~~~~~  113 (381)
                      +..+...+++ .+++  +.++.|..||+ +  ...+..+..+. ..+.++.+.|++.  .+++.+. ++.+..+|. +++
T Consensus        39 ~~~~~~~pdG-~ilv--s~~~~V~~~d~-~--G~~~W~~~~~~~~~~~~~~~~~dG~--~lv~~~~~~~~v~~vd~-~Gk  109 (276)
T 3no2_A           39 CNSVAATKAG-EILF--SYSKGAKMITR-D--GRELWNIAAPAGCEMQTARILPDGN--ALVAWCGHPSTILEVNM-KGE  109 (276)
T ss_dssp             CCEEEECTTS-CEEE--ECBSEEEEECT-T--SCEEEEEECCTTCEEEEEEECTTSC--EEEEEESTTEEEEEECT-TSC
T ss_pred             CcCeEECCCC-CEEE--eCCCCEEEECC-C--CCEEEEEcCCCCccccccEECCCCC--EEEEecCCCCEEEEEeC-CCC
Confidence            4555666664 4666  34678999998 3  45667776543 4788899999887  6777766 778888886 566


Q ss_pred             EEEEec------cCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCCCe
Q psy4650         114 CVQTLE------GHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGS  187 (381)
Q Consensus       114 ~~~~~~------~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~  187 (381)
                      .+..+.      ++......+++.++|.++++...++.|..||.. |+.++.+... ..+.++...++|..+++++.++.
T Consensus       110 ~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~  187 (276)
T 3no2_A          110 VLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVKLS-GTPFSSAFLDNGDCLVACGDAHC  187 (276)
T ss_dssp             EEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECS-SCCCEEEECTTSCEEEECBTTSE
T ss_pred             EEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEEEEEECC-CCccceeEcCCCCEEEEeCCCCe
Confidence            666554      222344566789999999999999999999998 9999988764 45567788899998888887777


Q ss_pred             EEEEecCCCceEEEecCCCEEEEEecCceee-cccccCCccccccCCceEEeeeh
Q psy4650         188 VLLKVGREEPAVSMDVNGCKIIWARHSEVQQ-ANLKTMPEVFENITAGVVLTLSV  241 (381)
Q Consensus       188 v~i~~~~~~~~~~~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~dg~~l~~~~  241 (381)
                      +..          +|..+|+.+|........ ..+.. .......++|..++...
T Consensus       188 v~~----------~d~~tG~~~w~~~~~~~~~~~l~~-~~~~~~~~~G~i~v~~~  231 (276)
T 3no2_A          188 FVQ----------LNLESNRIVRRVNANDIEGVQLFF-VAQLFPLQNGGLYICNW  231 (276)
T ss_dssp             EEE----------ECTTTCCEEEEEEGGGSBSCCCSE-EEEEEECTTSCEEEEEE
T ss_pred             EEE----------EeCcCCcEEEEecCCCCCCccccc-cccceEcCCCCEEEEec
Confidence            776          999999999998643211 11110 11123346777777664

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.04  E-value=6.2e-09  Score=93.63  Aligned_cols=131  Identities=11%  Similarity=0.059  Sum_probs=101.7

Q ss_pred             ceeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEE
Q psy4650          36 KVDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCV  115 (381)
Q Consensus        36 ~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~  115 (381)
                      .+.+.+  + +.+++.+ .++.|++||+....  .......|...+.++.+.+.    .++.+..||.+.+||+.++...
T Consensus        90 V~~l~f--d-~~~L~v~-~~~~l~v~dv~sl~--~~~~~~~~~~~v~~i~~~~p----~~av~~~dG~L~v~dl~~~~~~  159 (388)
T 1xip_A           90 VIFVCF--H-GDQVLVS-TRNALYSLDLEELS--EFRTVTSFEKPVFQLKNVNN----TLVILNSVNDLSALDLRTKSTK  159 (388)
T ss_dssp             EEEEEE--E-TTEEEEE-ESSEEEEEESSSTT--CEEEEEECSSCEEEEEECSS----EEEEEETTSEEEEEETTTCCEE
T ss_pred             eeEEEE--C-CCEEEEE-cCCcEEEEEchhhh--ccCccceeecceeeEEecCC----CEEEEECCCCEEEEEccCCccc
Confidence            556666  3 4567766 78999999986543  23355677888888877653    2888899999999999987754


Q ss_pred             EEeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCee--eEEE------e---cCCcceEEEEEcCCCCEEEEE
Q psy4650         116 QTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRL--EISL------T---YGLERVWTISSLKGSNNVAIG  182 (381)
Q Consensus       116 ~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~--~~~~------~---~~~~~v~~v~~~~~~~~l~~~  182 (381)
                      .    +...|.|++|+|+|  ++.|..||++++|+..++..  ..++      .   +|...|.++.|.+++.++++=
T Consensus       160 ~----~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y  231 (388)
T 1xip_A          160 Q----LAQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF  231 (388)
T ss_dssp             E----EEESEEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred             c----ccCCceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEE
Confidence            3    45689999999999  67889999999999988775  5556      2   367889999999999887763

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.03  E-value=3.5e-09  Score=103.31  Aligned_cols=152  Identities=13%  Similarity=0.032  Sum_probs=106.6

Q ss_pred             eeeeecCCCceEEEEEecC----------CeEEEecCCCcc---ceeeEeec-cccccEEEEEeeeCCCccEEEEEcCC-
Q psy4650          37 VDITTNKDMIEYKISYQES----------SRVKAFNPIQVA---TLILKTLY-GHEKGVNCVDYYHGGDKPYLISGADD-  101 (381)
Q Consensus        37 ~~i~~~~~~~~~~~s~~~d----------~~v~i~~~~~~~---~~~~~~l~-~h~~~v~~~~~~~~~~~~~l~s~~~d-  101 (381)
                      ..+.+++++. .++.++.+          ..|++|++....   ......+. .+...+.++.|+|+|.  +|+.++.+ 
T Consensus       133 ~~~~~spDg~-~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~--~la~~~~~~  209 (662)
T 3azo_A          133 ADPVLLPERG-EVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSPDGR--QAVWLAWDH  209 (662)
T ss_dssp             EEEEEETTTT-EEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECTTSS--EEEEEEECT
T ss_pred             cCcEECCCCC-EEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEecCCCcccCceECCCCC--EEEEEECCC
Confidence            4566777755 45555544          589999986410   02234555 6667888999999987  67766644 


Q ss_pred             -------CeEEEEECC-CC---eEEEEeccCCCCEEEEEEecCCCEEEEEeCCC--CEEEEeCCCCeeeEEEecCCcc--
Q psy4650         102 -------RLVKIWDYQ-NK---TCVQTLEGHGQNISAVCFHPELPIVITGSEDG--SVRVWHSGTHRLEISLTYGLER--  166 (381)
Q Consensus       102 -------~~v~vwd~~-~~---~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~--~i~vwd~~~~~~~~~~~~~~~~--  166 (381)
                             ..|.+||+. ++   .......+|...+..++|+|+|+++++++.++  .|.+||+.+++.......+...  
T Consensus       210 ~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~  289 (662)
T 3azo_A          210 PRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAG  289 (662)
T ss_dssp             TCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSC
T ss_pred             CCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccC
Confidence                   479999998 56   44445555678899999999999777887788  5666676666654333332222  


Q ss_pred             ------eEEEEEcCCCCEEEEEeCCCeEEEEe
Q psy4650         167 ------VWTISSLKGSNNVAIGYDEGSVLLKV  192 (381)
Q Consensus       167 ------v~~v~~~~~~~~l~~~~~dg~v~i~~  192 (381)
                            +.+++|+|++.++++++. +...+|.
T Consensus       290 p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~  320 (662)
T 3azo_A          290 PLWTPGMRWFAPLANGLIAVVHGK-GAAVLGI  320 (662)
T ss_dssp             CCCSTTCCSEEECTTSCEEEEEBS-SSCEEEE
T ss_pred             ccccccCceEeEeCCCEEEEEEEc-CccEEEE
Confidence                  467889999999999988 9888864

>1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1

Probab=99.01  E-value=3.8e-12  Score=115.83  Aligned_cols=108  Identities=19%  Similarity=0.241  Sum_probs=91.9

Q ss_pred             hccCCCcChhHHHHHHHHHhhhhhhccccceeeEEEecccC---C-cccccccChHHHHHHHHHHhhhhhhhhHhhhccc
Q psy4650         247 YRLDISDSHRSVAKLRAAAETCMHVLSTLQSSNVFVESLYD---G-LDFHHNVSRARFESLIGGLLTSFVQPCMHVLSTL  322 (381)
Q Consensus       247 ~~~d~~~~~~~~~~l~~~~e~ak~~lS~~~~~~i~~~~l~~---g-~~~~~~itr~~fe~l~~~l~~~~~~~~~~~Ls~~  322 (381)
                      +..++..+++.+.+++.++|++|+.|+...+..+.++.+++   | .++...++|++|++++.+++.++.+.++++|...
T Consensus       248 ~~~~~~~~~~~~~~l~~~ae~~K~~ls~~~~~~i~i~~~~~~~~G~~~~~~~it~~~~~~~~~~~~~~i~~~i~~~l~~~  327 (383)
T 1dkg_D          248 QGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNLPYITADATGPKHMNIKVTRAKLESLVEDLVNRSIELLKVALQDA  327 (383)
T ss_dssp             HCCCSTTCHHHHHHHHHHHHHHHHHTTSSSEEEEEEEEEEEETTEEEEEEEEEEHHHHHHHSHHHHHHHHHHHHHHHHTT
T ss_pred             hCCCcccCHHHHHHHHHHHHHHHHHhCCCCceEEEEecccccCCCCeeEEEEEeHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            35566777889999999999999999998888888887654   3 5667799999999999999999999999999874


Q ss_pred             cceeeEeeccccCcceEEeecHHHHHHHHHHHHHH
Q psy4650         323 QSSNVFVESLYDGLDFHHNVSRARFESLIGGLLTS  357 (381)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~  357 (381)
                      .   +....+..++++||+.+.|.+++++++.|++
T Consensus       328 ~---~~~~~i~~IvL~GG~s~~p~l~~~l~~~~~~  359 (383)
T 1dkg_D          328 G---LSVSDIDDVILVGGQTRMPMVQKKVAEFFGK  359 (383)
T ss_dssp             T---CCTTTCCEEEEESGGGGSHHHHHHHHHHHSS
T ss_pred             C---CCHhhCCEEEEecCccccHHHHHHHHHHhCC
Confidence            3   3345567788899999999999999999974

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=98.99  E-value=3.6e-08  Score=85.99  Aligned_cols=192  Identities=8%  Similarity=-0.089  Sum_probs=126.9

Q ss_pred             cceeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeE
Q psy4650          35 TKVDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTC  114 (381)
Q Consensus        35 ~~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~  114 (381)
                      .+..+...+++..+++++..++.|..|++...    ...+..+...+.+++++|++.  ++++...++.|.+||..+++.
T Consensus        29 ~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~----~~~~~~~~~~~~~l~~~~dg~--l~v~~~~~~~i~~~d~~~g~~  102 (296)
T 3e5z_A           29 WTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ----LSPEMHPSHHQNGHCLNKQGH--LIACSHGLRRLERQREPGGEW  102 (296)
T ss_dssp             SEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC----EEEEESSCSSEEEEEECTTCC--EEEEETTTTEEEEECSTTCCE
T ss_pred             cccCCeEeCCCCEEEEEeCCCCEEEEEECCCC----eEEEECCCCCcceeeECCCCc--EEEEecCCCeEEEEcCCCCcE
Confidence            44567777776657888888999999998642    455666778899999999876  677777789999999988875


Q ss_pred             EEEeccC----CCCEEEEEEecCCCEEEEE----e-------------CCCCEEEEeCCCCeeeEEEecCCcceEEEEEc
Q psy4650         115 VQTLEGH----GQNISAVCFHPELPIVITG----S-------------EDGSVRVWHSGTHRLEISLTYGLERVWTISSL  173 (381)
Q Consensus       115 ~~~~~~~----~~~v~~~~~~p~~~~l~s~----~-------------~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~  173 (381)
                      .......    ...+..++++|+|.++++.    .             ..+.|..+|.. ++ ...+..+......++|+
T Consensus       103 ~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~-~~~~~~~~~~~~gi~~s  180 (296)
T 3e5z_A          103 ESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT-LSAPIRDRVKPNGLAFL  180 (296)
T ss_dssp             EEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC-EEEEECCCSSEEEEEEC
T ss_pred             EEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CC-EEEeecCCCCCccEEEC
Confidence            4433221    1245679999999988873    2             12345555554 44 33444555677899999


Q ss_pred             CCCCEEEEEeCCCeEEEEecCCCceEEEecC-CCEE---EEEecCceeecccccCCccccccCCceEEeeehHHHHHhcc
Q psy4650         174 KGSNNVAIGYDEGSVLLKVGREEPAVSMDVN-GCKI---IWARHSEVQQANLKTMPEVFENITAGVVLTLSVHVTIKYRL  249 (381)
Q Consensus       174 ~~~~~l~~~~~dg~v~i~~~~~~~~~~~d~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~d~~~~~~  249 (381)
                      |+|+.+++.+.++.+.+          |+.. ++..   .....      ...+....+++.++|.+.+..  ...+..|
T Consensus       181 ~dg~~lv~~~~~~~i~~----------~~~~~~g~~~~~~~~~~------~~~~~p~~i~~d~~G~l~v~~--~~~v~~~  242 (296)
T 3e5z_A          181 PSGNLLVSDTGDNATHR----------YCLNARGETEYQGVHFT------VEPGKTDGLRVDAGGLIWASA--GDGVHVL  242 (296)
T ss_dssp             TTSCEEEEETTTTEEEE----------EEECSSSCEEEEEEEEC------CSSSCCCSEEEBTTSCEEEEE--TTEEEEE
T ss_pred             CCCCEEEEeCCCCeEEE----------EEECCCCcCcCCCeEee------CCCCCCCeEEECCCCCEEEEc--CCeEEEE
Confidence            99998877777788888          5543 2322   00010      011222235677888765555  5566667


Q ss_pred             CCC
Q psy4650         250 DIS  252 (381)
Q Consensus       250 d~~  252 (381)
                      +..
T Consensus       243 ~~~  245 (296)
T 3e5z_A          243 TPD  245 (296)
T ss_dssp             CTT
T ss_pred             CCC
Confidence            654

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=98.98  E-value=3e-08  Score=85.05  Aligned_cols=197  Identities=9%  Similarity=-0.012  Sum_probs=128.6

Q ss_pred             cceeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeec-cccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCe
Q psy4650          35 TKVDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLY-GHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKT  113 (381)
Q Consensus        35 ~~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~-~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~  113 (381)
                      .+..+...+++. +.++.. ++.|.+|++...   ....+. .....+.++++.+++.  ++++...++.|.+|+..+..
T Consensus        68 ~p~~i~~~~~g~-l~v~~~-~~~i~~~d~~~~---~~~~~~~~~~~~p~~i~~~~~g~--l~v~~~~~~~i~~~~~~~~~  140 (270)
T 1rwi_B           68 QPQGLAVDGAGT-VYVTDF-NNRVVTLAAGSN---NQTVLPFDGLNYPEGLAVDTQGA--VYVADRGNNRVVKLAAGSKT  140 (270)
T ss_dssp             SCCCEEECTTCC-EEEEET-TTEEEEECTTCS---CCEECCCCSCSSEEEEEECTTCC--EEEEEGGGTEEEEECTTCCS
T ss_pred             CcceeEECCCCC-EEEEcC-CCEEEEEeCCCc---eEeeeecCCcCCCcceEECCCCC--EEEEECCCCEEEEEECCCce
Confidence            456677776644 555544 889999998642   222222 2336789999998775  67777778899999866554


Q ss_pred             EEEEeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCCCeEEEEec
Q psy4650         114 CVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKVG  193 (381)
Q Consensus       114 ~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~~  193 (381)
                      ...........+.+++++|++..+++...++.|.+||..++........+...+..++++++|.+.++...++.+..   
T Consensus       141 ~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~---  217 (270)
T 1rwi_B          141 QTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVK---  217 (270)
T ss_dssp             CEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEE---
T ss_pred             eEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEE---
Confidence            33322233345688999999997777777889999999876654333333367889999999987777777778877   


Q ss_pred             CCCceEEEecCCCEEEEEecCceeecccccCCccccccCCceEEeeehHHHHHhccCCCcC
Q psy4650         194 REEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSVHVTIKYRLDISDS  254 (381)
Q Consensus       194 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~d~~~~~~d~~~~  254 (381)
                             |+..+.........     .+ .....+++.++|...+....++++..++....
T Consensus       218 -------~~~~~~~~~~~~~~-----~~-~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~  265 (270)
T 1rwi_B          218 -------LLAGSTTSTVLPFT-----GL-NTPLAVAVDSDRTVYVADRGNDRVVKLTSLEH  265 (270)
T ss_dssp             -------ECTTCSCCEECCCC-----SC-SCEEEEEECTTCCEEEEEGGGTEEEEECCCGG
T ss_pred             -------EcCCCCcceeeccC-----CC-CCceeEEECCCCCEEEEECCCCEEEEEcCCCc
Confidence                   55544332111000     01 11122566788987777777777777766543

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=98.94  E-value=3.6e-08  Score=89.34  Aligned_cols=166  Identities=10%  Similarity=-0.016  Sum_probs=108.3

Q ss_pred             ceeeEeeccccccEEE-----EEeeeCCCccEEEEEcC-CC--eEEEEECCCCeEEEEeccCCCCEEEEEEecCCCEEEE
Q psy4650          68 TLILKTLYGHEKGVNC-----VDYYHGGDKPYLISGAD-DR--LVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPIVIT  139 (381)
Q Consensus        68 ~~~~~~l~~h~~~v~~-----~~~~~~~~~~~l~s~~~-d~--~v~vwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s  139 (381)
                      ...+..+..|......     .+|+|+|.  .|+.++. ++  .|.+||..+++......++...+..+.|+|+|+.|+.
T Consensus        20 g~~~~~lt~~~~~~~~~~~~~~~~SpDg~--~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~   97 (388)
T 3pe7_A           20 GAQVTRLTPPDVTCHRNYFYQKCFTRDGS--KLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFY   97 (388)
T ss_dssp             CCEEEECSCTTSCEECCCTTSCCBCTTSC--EEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEE
T ss_pred             CcceEEecCCcccccchhhcCccCCCCCC--EEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEE
Confidence            3445667777766666     88999987  5776665 66  4888899999887777777666667889999999999


Q ss_pred             EeCCCCEEEEeCCCCeeeEEEecCCcceEEEE--EcCCCCEEEEEeCCCeE-E----------EE-ecCCCceEEEecCC
Q psy4650         140 GSEDGSVRVWHSGTHRLEISLTYGLERVWTIS--SLKGSNNVAIGYDEGSV-L----------LK-VGREEPAVSMDVNG  205 (381)
Q Consensus       140 ~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~--~~~~~~~l~~~~~dg~v-~----------i~-~~~~~~~~~~d~~~  205 (381)
                      ++.++.+.+||+.+++.......+...+....  ++|++..++....++.- .          .+ ......+..||..+
T Consensus        98 ~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~  177 (388)
T 3pe7_A           98 VKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKT  177 (388)
T ss_dssp             EETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTT
T ss_pred             EeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCC
Confidence            99999999999999987766665555554343  47888887643211000 0          00 00112334477776


Q ss_pred             CEEEEEecCceeecccccCCccccccC-CceEEeeehH
Q psy4650         206 CKIIWARHSEVQQANLKTMPEVFENIT-AGVVLTLSVH  242 (381)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-dg~~l~~~~~  242 (381)
                      +....-....       .......|+| ||..+++...
T Consensus       178 g~~~~l~~~~-------~~~~~~~~sp~dg~~l~~~~~  208 (388)
T 3pe7_A          178 GESTVILQEN-------QWLGHPIYRPYDDSTVAFCHE  208 (388)
T ss_dssp             CCEEEEEEES-------SCEEEEEEETTEEEEEEEEEC
T ss_pred             CceEEeecCC-------ccccccEECCCCCCEEEEEEe
Confidence            6543222111       0111256889 9998887664

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=98.93  E-value=9.4e-08  Score=84.79  Aligned_cols=192  Identities=9%  Similarity=-0.043  Sum_probs=127.8

Q ss_pred             ceeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEE
Q psy4650          36 KVDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCV  115 (381)
Q Consensus        36 ~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~  115 (381)
                      +..+...+  ..+.++...++.|.+||+.+  ...+.++. .......+++++++.  ++++...++.|.+||..+++..
T Consensus        46 ~~~i~~~~--~~lyv~~~~~~~v~viD~~t--~~~~~~i~-~~~~p~~i~~~~~g~--lyv~~~~~~~v~~iD~~t~~~~  118 (328)
T 3dsm_A           46 AQSMVIRD--GIGWIVVNNSHVIFAIDINT--FKEVGRIT-GFTSPRYIHFLSDEK--AYVTQIWDYRIFIINPKTYEIT  118 (328)
T ss_dssp             EEEEEEET--TEEEEEEGGGTEEEEEETTT--CCEEEEEE-CCSSEEEEEEEETTE--EEEEEBSCSEEEEEETTTTEEE
T ss_pred             ceEEEEEC--CEEEEEEcCCCEEEEEECcc--cEEEEEcC-CCCCCcEEEEeCCCe--EEEEECCCCeEEEEECCCCeEE
Confidence            44555433  44556666788999999974  34445554 346788999988763  5566658999999999999877


Q ss_pred             EEeccCC-----CCEEEEEEecCCCEEEEEe-CCCCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCC----
Q psy4650         116 QTLEGHG-----QNISAVCFHPELPIVITGS-EDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDE----  185 (381)
Q Consensus       116 ~~~~~~~-----~~v~~~~~~p~~~~l~s~~-~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d----  185 (381)
                      ..+....     .....+++ .++..+++.. .++.|.+||..+++....+... .....+.++|+|++++++..+    
T Consensus       119 ~~i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g-~~p~~i~~~~dG~l~v~~~~~~~~~  196 (328)
T 3dsm_A          119 GYIECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDKVVDELTIG-IQPTSLVMDKYNKMWTITDGGYEGS  196 (328)
T ss_dssp             EEEECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTEEEEEEECS-SCBCCCEECTTSEEEEEBCCBCTTC
T ss_pred             EEEEcCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcC-CCccceEEcCCCCEEEEECCCccCC
Confidence            7665332     13456666 3444444443 4889999999999988877653 345678889988866665543    


Q ss_pred             ------CeEEEEecCCCceEEEecCCCEEEEEecCceeecccccCCccccccCCceEEeeehHHHHHhccCCCc
Q psy4650         186 ------GSVLLKVGREEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSVHVTIKYRLDISD  253 (381)
Q Consensus       186 ------g~v~i~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~d~~~~~~d~~~  253 (381)
                            +.+.+          +|..++..........     ......++++||+..+++...  ..+.+|...
T Consensus       197 ~~~~~~~~v~~----------id~~t~~v~~~~~~~~-----g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t  253 (328)
T 3dsm_A          197 PYGYEAPSLYR----------IDAETFTVEKQFKFKL-----GDWPSEVQLNGTRDTLYWINN--DIWRMPVEA  253 (328)
T ss_dssp             SSCBCCCEEEE----------EETTTTEEEEEEECCT-----TCCCEEEEECTTSCEEEEESS--SEEEEETTC
T ss_pred             ccccCCceEEE----------EECCCCeEEEEEecCC-----CCCceeEEEecCCCEEEEEcc--EEEEEECCC
Confidence                  55655          8888887654432110     122334678899888887665  555666643

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=98.92  E-value=3.9e-08  Score=84.35  Aligned_cols=196  Identities=10%  Similarity=0.015  Sum_probs=123.0

Q ss_pred             cceeeeecCCCceEEE-EEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCe
Q psy4650          35 TKVDITTNKDMIEYKI-SYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKT  113 (381)
Q Consensus        35 ~~~~i~~~~~~~~~~~-s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~  113 (381)
                      .|..+...+++. +.+ +...++.|..|++......  .....+...+.++++++++.  ++++.. ++.|.+||..+..
T Consensus        25 ~p~~i~~~~~g~-l~v~~~~~~~~i~~~~~~~~~~~--~~~~~~~~~p~~i~~~~~g~--l~v~~~-~~~i~~~d~~~~~   98 (270)
T 1rwi_B           25 SPSGVAVDSAGN-VYVTSEGMYGRVVKLATGSTGTT--VLPFNGLYQPQGLAVDGAGT--VYVTDF-NNRVVTLAAGSNN   98 (270)
T ss_dssp             CEEEEEECTTCC-EEEEECSSSCEEEEECC-----E--ECCCCSCCSCCCEEECTTCC--EEEEET-TTEEEEECTTCSC
T ss_pred             CccceEECCCCC-EEEEccCCCCcEEEecCCCcccc--eEeeCCcCCcceeEECCCCC--EEEEcC-CCEEEEEeCCCce
Confidence            677888887754 555 5567889999997532211  11123345678899988766  566655 8899999987654


Q ss_pred             EEEEeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCCCeEEEEec
Q psy4650         114 CVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKVG  193 (381)
Q Consensus       114 ~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~~  193 (381)
                      ...........+..++++|+|..+++...++.|.+||..+.............+..++++++|+++++...++.+.+   
T Consensus        99 ~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~---  175 (270)
T 1rwi_B           99 QTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVK---  175 (270)
T ss_dssp             CEECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEE---
T ss_pred             EeeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEE---
Confidence            33222223356899999999997777777889999987655433322223346778999999987777767778877   


Q ss_pred             CCCceEEEecCCCEEEEEecCceeecccccCCccccccCCceEEeeehHHHHHhccCCC
Q psy4650         194 REEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSVHVTIKYRLDIS  252 (381)
Q Consensus       194 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~d~~~~~~d~~  252 (381)
                             ||..++.........     + .....+++.++|...+.....+....++..
T Consensus       176 -------~~~~~~~~~~~~~~~-----~-~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~  221 (270)
T 1rwi_B          176 -------LEAESNNQVVLPFTD-----I-TAPWGIAVDEAGTVYVTEHNTNQVVKLLAG  221 (270)
T ss_dssp             -------ECTTTCCEEECCCSS-----C-CSEEEEEECTTCCEEEEETTTSCEEEECTT
T ss_pred             -------EecCCCceEeecccC-----C-CCceEEEECCCCCEEEEECCCCcEEEEcCC
Confidence                   666554432211111     1 112225667788665555555566666654

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=98.92  E-value=3.6e-08  Score=87.46  Aligned_cols=176  Identities=9%  Similarity=0.044  Sum_probs=118.2

Q ss_pred             ecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEEEeccCCCCEEEEEEec
Q psy4650          53 QESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHP  132 (381)
Q Consensus        53 ~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~p  132 (381)
                      +.++.++.|.     ......+.++...+.+++|+|++.  +++++..++.|.+||..+++.......+...+.+++++|
T Consensus        24 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~g~--l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~   96 (333)
T 2dg1_A           24 ISESELQTIT-----AEPWLEISKKGLQLEGLNFDRQGQ--LFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHK   96 (333)
T ss_dssp             CCGGGSCEEE-----CEEEEEEESSCCCEEEEEECTTSC--EEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECT
T ss_pred             eecccCcccc-----cceeEEEeccCccccCcEECCCCC--EEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECC
Confidence            5566777773     234456667777889999998776  677888899999999988876554445667899999999


Q ss_pred             CCCEEEEEeCC----CCEEEEeCCCCeeeEEEe--cCCcceEEEEEcCCCCEEEEEeCC------CeEEEEecCCCceEE
Q psy4650         133 ELPIVITGSED----GSVRVWHSGTHRLEISLT--YGLERVWTISSLKGSNNVAIGYDE------GSVLLKVGREEPAVS  200 (381)
Q Consensus       133 ~~~~l~s~~~d----~~i~vwd~~~~~~~~~~~--~~~~~v~~v~~~~~~~~l~~~~~d------g~v~i~~~~~~~~~~  200 (381)
                      ++.++++...+    +.|.+||..++.....+.  .....+..++++|+|.++++...+      +.+..          
T Consensus        97 dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~----------  166 (333)
T 2dg1_A           97 DGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYY----------  166 (333)
T ss_dssp             TSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEE----------
T ss_pred             CCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEE----------
Confidence            99988877666    689999998876543332  234568999999999877765531      33333          


Q ss_pred             EecCCCEEEEEecCceeecccccCCccccccCCceEEeee-hHHHHHhccCCC
Q psy4650         201 MDVNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLS-VHVTIKYRLDIS  252 (381)
Q Consensus       201 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~-~~d~~~~~~d~~  252 (381)
                      +|..++....... .     . .....+.++|||..++++ ..+...+.|++.
T Consensus       167 ~~~~~~~~~~~~~-~-----~-~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~  212 (333)
T 2dg1_A          167 VSPDFRTVTPIIQ-N-----I-SVANGIALSTDEKVLWVTETTANRLHRIALE  212 (333)
T ss_dssp             ECTTSCCEEEEEE-E-----E-SSEEEEEECTTSSEEEEEEGGGTEEEEEEEC
T ss_pred             EeCCCCEEEEeec-C-----C-CcccceEECCCCCEEEEEeCCCCeEEEEEec
Confidence            6655443221110 0     0 111225678898766544 445566667664

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=98.90  E-value=8.3e-08  Score=85.52  Aligned_cols=117  Identities=8%  Similarity=0.019  Sum_probs=85.1

Q ss_pred             CCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCC---C--eEEEEECCCCeEEEEeccCCCCEEEEE
Q psy4650          55 SSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADD---R--LVKIWDYQNKTCVQTLEGHGQNISAVC  129 (381)
Q Consensus        55 d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d---~--~v~vwd~~~~~~~~~~~~~~~~v~~~~  129 (381)
                      ++.+.+|++.....   ..+    ..+.++.|+|+|.  .|+.++.+   +  .|.+|++.+++.......+ . +..++
T Consensus        42 ~~~l~~~d~~~~~~---~~l----~~~~~~~~SpDg~--~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~-~-~~~~~  110 (347)
T 2gop_A           42 ENTIVIENLKNNAR---RFI----ENATMPRISPDGK--KIAFMRANEEKKVSEIWVADLETLSSKKILEAK-N-IRSLE  110 (347)
T ss_dssp             EEEEEEEETTTCCE---EEE----ESCEEEEECTTSS--EEEEEEEETTTTEEEEEEEETTTTEEEEEEEES-E-EEEEE
T ss_pred             cceEEEEeCCCCce---EEc----ccCCCeEECCCCC--EEEEEEeccCCCcceEEEEECCCCceEEEEcCC-C-cccee
Confidence            56788998864332   233    5688999999987  56665543   3  4778888888766555443 3 89999


Q ss_pred             EecCCCEEEEEeC---------------------------CCCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEE
Q psy4650         130 FHPELPIVITGSE---------------------------DGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIG  182 (381)
Q Consensus       130 ~~p~~~~l~s~~~---------------------------d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~  182 (381)
                      |+|+|+.|+.++.                           ...|.+||+.+++.+..+.. . .+..+.|+|+| +++++
T Consensus       111 wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~  187 (347)
T 2gop_A          111 WNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNV  187 (347)
T ss_dssp             ECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEE
T ss_pred             ECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEEEE
Confidence            9999998887763                           25799999999887455544 3 78889999999 77777


Q ss_pred             eCC
Q psy4650         183 YDE  185 (381)
Q Consensus       183 ~~d  185 (381)
                      ..+
T Consensus       188 ~~~  190 (347)
T 2gop_A          188 PHR  190 (347)
T ss_dssp             ECC
T ss_pred             ecc
Confidence            554

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=98.89  E-value=2.7e-07  Score=81.71  Aligned_cols=151  Identities=9%  Similarity=0.031  Sum_probs=101.5

Q ss_pred             ceeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCC----CeEEEEECCC
Q psy4650          36 KVDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADD----RLVKIWDYQN  111 (381)
Q Consensus        36 ~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d----~~v~vwd~~~  111 (381)
                      +..+...+++ .+.+++..++.|.+|++....  .......+...+.+++++|++.  ++++...+    +.|.+||..+
T Consensus        47 ~~~~~~~~~g-~l~~~~~~~~~i~~~d~~~~~--~~~~~~~~~~~~~~i~~~~dg~--l~v~~~~~~~~~~~i~~~d~~~  121 (333)
T 2dg1_A           47 LEGLNFDRQG-QLFLLDVFEGNIFKINPETKE--IKRPFVSHKANPAAIKIHKDGR--LFVCYLGDFKSTGGIFAATENG  121 (333)
T ss_dssp             EEEEEECTTS-CEEEEETTTCEEEEECTTTCC--EEEEEECSSSSEEEEEECTTSC--EEEEECTTSSSCCEEEEECTTS
T ss_pred             ccCcEECCCC-CEEEEECCCCEEEEEeCCCCc--EEEEeeCCCCCcceEEECCCCc--EEEEeCCCCCCCceEEEEeCCC
Confidence            3455666654 466777888999999986422  2222225667899999999876  66666666    6899999988


Q ss_pred             CeEEEEec--cCCCCEEEEEEecCCCEEEEEeC------CCCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEE-E
Q psy4650         112 KTCVQTLE--GHGQNISAVCFHPELPIVITGSE------DGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAI-G  182 (381)
Q Consensus       112 ~~~~~~~~--~~~~~v~~~~~~p~~~~l~s~~~------d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~-~  182 (381)
                      +.....+.  .+...+..++++|+|..+++...      .+.|..||..+++... +......+..++|+|+|+.+.. .
T Consensus       122 ~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~i~~~~dg~~l~v~~  200 (333)
T 2dg1_A          122 DNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTP-IIQNISVANGIALSTDEKVLWVTE  200 (333)
T ss_dssp             CSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEE-EEEEESSEEEEEECTTSSEEEEEE
T ss_pred             CEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEE-eecCCCcccceEECCCCCEEEEEe
Confidence            76543332  24457899999999987776653      2456666665554433 2223345788999999986544 4


Q ss_pred             eCCCeEEEEe
Q psy4650         183 YDEGSVLLKV  192 (381)
Q Consensus       183 ~~dg~v~i~~  192 (381)
                      +.++.+.+|+
T Consensus       201 ~~~~~i~~~d  210 (333)
T 2dg1_A          201 TTANRLHRIA  210 (333)
T ss_dssp             GGGTEEEEEE
T ss_pred             CCCCeEEEEE
Confidence            5577887743

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=98.86  E-value=3e-07  Score=82.66  Aligned_cols=89  Identities=11%  Similarity=0.012  Sum_probs=67.2

Q ss_pred             EEEecCCCEEEEEeC-----------CCCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCC
Q psy4650         128 VCFHPELPIVITGSE-----------DGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKVGREE  196 (381)
Q Consensus       128 ~~~~p~~~~l~s~~~-----------d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~~~~~  196 (381)
                      ++|+|++..+..+..           .+.|.+||+.+++.+.++..+.  +.+++|+|+|++|++++. +.+.+      
T Consensus       259 ~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v------  329 (361)
T 2oiz_A          259 VGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNV------  329 (361)
T ss_dssp             EEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEECS-SCEEE------
T ss_pred             EEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCC-CeEEE------
Confidence            688999886665432           3479999999999999998776  999999999999988886 88888      


Q ss_pred             ceEEEecCCC--EEEEEecCceeecccccCCccccccCCce
Q psy4650         197 PAVSMDVNGC--KIIWARHSEVQQANLKTMPEVFENITAGV  235 (381)
Q Consensus       197 ~~~~~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~dg~  235 (381)
                          ||..++  +.+-.+.      .....+..+.++|+|.
T Consensus       330 ----~D~~t~~l~~~~~i~------~~G~~P~~~~~~p~G~  360 (361)
T 2oiz_A          330 ----YDISQPEPKLLRTIE------GAAEASLQVQFHPVGG  360 (361)
T ss_dssp             ----EECSSSSCEEEEEET------TSCSSEEEEEECCCSC
T ss_pred             ----EECCCCcceeeEEec------cCCCCcEEEEecCCCC
Confidence                888888  7664431      1223333356677764

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.84  E-value=2.2e-09  Score=97.57  Aligned_cols=201  Identities=6%  Similarity=-0.124  Sum_probs=117.7

Q ss_pred             eeeecCCCceEEEEEecCC--eEEEecCCCccceeeEeecccccc-EEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeE
Q psy4650          38 DITTNKDMIEYKISYQESS--RVKAFNPIQVATLILKTLYGHEKG-VNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTC  114 (381)
Q Consensus        38 ~i~~~~~~~~~~~s~~~d~--~v~i~~~~~~~~~~~~~l~~h~~~-v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~  114 (381)
                      .+...+++..++++...++  .+.+|++...  . ...+..+... ...+.|+|++.  .|+.++.++.+.+||+.+++.
T Consensus        40 ~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~--~-~~~l~~~~~~~~~~~~~spdg~--~l~~~~~~~~l~~~d~~~~~~  114 (396)
T 3c5m_A           40 QKCFTQDGKKLLFAGDFDGNRNYYLLNLETQ--Q-AVQLTEGKGDNTFGGFISTDER--AFFYVKNELNLMKVDLETLEE  114 (396)
T ss_dssp             SCCBCTTSCEEEEEECTTSSCEEEEEETTTT--E-EEECCCSSCBCTTTCEECTTSS--EEEEEETTTEEEEEETTTCCE
T ss_pred             cCcCCCCCCEEEEEEecCCCceEEEEECCCC--c-EEEeecCCCCccccceECCCCC--EEEEEEcCCcEEEEECCCCCc
Confidence            4556677555555554433  6777787542  2 2333333333 33478999887  788888889999999998876


Q ss_pred             EEEeccCCCCEEE-------------------EEEecCCCEEEEE-----eCCCCEEEEeCCCCeeeEEEecCCcceEEE
Q psy4650         115 VQTLEGHGQNISA-------------------VCFHPELPIVITG-----SEDGSVRVWHSGTHRLEISLTYGLERVWTI  170 (381)
Q Consensus       115 ~~~~~~~~~~v~~-------------------~~~~p~~~~l~s~-----~~d~~i~vwd~~~~~~~~~~~~~~~~v~~v  170 (381)
                      ......+......                   ..|+|++..++.+     ..+..|.+||+.+++..... .+...+..+
T Consensus       115 ~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~-~~~~~~~~~  193 (396)
T 3c5m_A          115 QVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIH-QDTAWLGHP  193 (396)
T ss_dssp             EEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEE-EESSCEEEE
T ss_pred             EEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeec-cCCcccccc
Confidence            6655545443222                   3456777655433     35668999999988765544 355678899


Q ss_pred             EEcC-CCCEEEEEeCCCeEEEEecCCCceEEEecCCCEEEEEecCceeecccccCCccccccCCceEEeeehHH-----H
Q psy4650         171 SSLK-GSNNVAIGYDEGSVLLKVGREEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSVHV-----T  244 (381)
Q Consensus       171 ~~~~-~~~~l~~~~~dg~v~i~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~d-----~  244 (381)
                      .|+| ++..++..+.++.    ......+..+|..++.... +.....    ........|+|||+.+++...+     .
T Consensus       194 ~~sp~dg~~l~~~~~~~~----~~~~~~l~~~d~~~~~~~~-l~~~~~----~~~~~~~~~spdg~~l~~~~~~~~~~~~  264 (396)
T 3c5m_A          194 IYRPFDDSTVGFCHEGPH----DLVDARMWLVNEDGSNVRK-IKEHAE----GESCTHEFWIPDGSAMAYVSYFKGQTDR  264 (396)
T ss_dssp             EEETTEEEEEEEEECSCS----SSCSCCCEEEETTSCCCEE-SSCCCT----TEEEEEEEECTTSSCEEEEEEETTTCCE
T ss_pred             eECCCCCCEEEEEecCCC----CCCCceEEEEECCCCceeE-eeccCC----CccccceEECCCCCEEEEEecCCCCccc
Confidence            9999 7887776654322    0000122336665443211 111000    0001114688999987776543     2


Q ss_pred             HHhccCCCc
Q psy4650         245 IKYRLDISD  253 (381)
Q Consensus       245 ~~~~~d~~~  253 (381)
                      ..+.|++..
T Consensus       265 ~l~~~d~~~  273 (396)
T 3c5m_A          265 VIYKANPET  273 (396)
T ss_dssp             EEEEECTTT
T ss_pred             eEEEEECCC
Confidence            256677643

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=98.81  E-value=4.8e-08  Score=87.92  Aligned_cols=131  Identities=11%  Similarity=0.131  Sum_probs=96.8

Q ss_pred             cCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEc----------CCCeEEEEECCCCeEEEEeccC--
Q psy4650          54 ESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGA----------DDRLVKIWDYQNKTCVQTLEGH--  121 (381)
Q Consensus        54 ~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~----------~d~~v~vwd~~~~~~~~~~~~~--  121 (381)
                      .|++|.+||+..  ...+..+..+..+  .++|+|++.  +++.+.          .+++|.+||..+++.+..+...  
T Consensus        29 ~d~~v~v~D~~t--~~~~~~i~~g~~p--~i~~spdg~--~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~  102 (361)
T 2oiz_A           29 TESRVHVYDYTN--GKFLGMVPTAFNG--HVQVSNDGK--KIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPK  102 (361)
T ss_dssp             GGCEEEEEETTT--CCEEEEEECCEEE--EEEECTTSS--EEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTT
T ss_pred             ccCeEEEEECCC--CeEEEEecCCCCC--ceEECCCCC--EEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCcc
Confidence            367999999864  3455677766665  899999887  555553          3678999999998888777532  


Q ss_pred             ----CCCEEEEEEecCCCEEEEEeC--CCCEEEEeCCCCeeeEE-EecCCcceEEEEEcCCC-CEEEEEeCCCeEEEEe
Q psy4650         122 ----GQNISAVCFHPELPIVITGSE--DGSVRVWHSGTHRLEIS-LTYGLERVWTISSLKGS-NNVAIGYDEGSVLLKV  192 (381)
Q Consensus       122 ----~~~v~~~~~~p~~~~l~s~~~--d~~i~vwd~~~~~~~~~-~~~~~~~v~~v~~~~~~-~~l~~~~~dg~v~i~~  192 (381)
                          ......++++|+|++++++..  ++.|.+||+.+++.+.. +...  ....+.+.|.+ ..+++.+.||.+.++.
T Consensus       103 ~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~--~~~~v~~~p~~~~~~~~~~~dg~~~~v~  179 (361)
T 2oiz_A          103 RVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAA--GCWSVIPQPNRPRSFMTICGDGGLLTIN  179 (361)
T ss_dssp             BCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGT--TEEEEEECTTSSSEEEEEETTSSEEEEE
T ss_pred             ccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCC--CcceeEEcCCCCeeEEEECCCCcEEEEE
Confidence                234578999999998887763  68999999999988777 5432  22335667765 6777888889888744

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=98.80  E-value=6.5e-07  Score=85.17  Aligned_cols=186  Identities=12%  Similarity=0.031  Sum_probs=125.9

Q ss_pred             ceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECC--CCeEEEEeccCCC
Q psy4650          46 IEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQ--NKTCVQTLEGHGQ  123 (381)
Q Consensus        46 ~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~--~~~~~~~~~~~~~  123 (381)
                      ..++++...+++|.++|+.+  ..++.++.. ...+..+.|+|++.  +++.++.|+.|.+||+.  +++.+..+.... 
T Consensus       167 ~~~~V~~~~~~~V~viD~~t--~~v~~~i~~-g~~p~~v~~SpDGr--~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~-  240 (567)
T 1qks_A          167 NLFSVTLRDAGQIALIDGST--YEIKTVLDT-GYAVHISRLSASGR--YLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS-  240 (567)
T ss_dssp             GEEEEEETTTTEEEEEETTT--CCEEEEEEC-SSCEEEEEECTTSC--EEEEEETTSEEEEEETTSSSCCEEEEEECCS-
T ss_pred             ceEEEEeCCCCeEEEEECCC--CeEEEEEeC-CCCccceEECCCCC--EEEEEcCCCeEEEEECCCCCCcEeEEEecCC-
Confidence            45778888899999999864  345555543 34567999999887  78888899999999996  777777776533 


Q ss_pred             CEEEEEEe----cCCCEEEEEeC-CCCEEEEeCCCCeeeEEEecC-----------CcceEEEEEcCCCCEEE-EEeCCC
Q psy4650         124 NISAVCFH----PELPIVITGSE-DGSVRVWHSGTHRLEISLTYG-----------LERVWTISSLKGSNNVA-IGYDEG  186 (381)
Q Consensus       124 ~v~~~~~~----p~~~~l~s~~~-d~~i~vwd~~~~~~~~~~~~~-----------~~~v~~v~~~~~~~~l~-~~~~dg  186 (381)
                      ....++|+    |+|++++.++. ++.+.++|..+.+.+..+...           ...+..+..++++..++ ....+|
T Consensus       241 ~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g  320 (567)
T 1qks_A          241 EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETG  320 (567)
T ss_dssp             EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTT
T ss_pred             CCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCC
Confidence            45889999    69997776654 799999999999988876532           12577788888765443 344557


Q ss_pred             eEEEEecCCCceEEEecCCCE--EEEEecCceeecccccCCccccccCCceEEeeeh-HHHHHhccCCCcC
Q psy4650         187 SVLLKVGREEPAVSMDVNGCK--IIWARHSEVQQANLKTMPEVFENITAGVVLTLSV-HVTIKYRLDISDS  254 (381)
Q Consensus       187 ~v~i~~~~~~~~~~~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~-~d~~~~~~d~~~~  254 (381)
                      .+.+          +|..+..  .+..+..       ..+...+.|+|||++++++. ..+.+..+|....
T Consensus       321 ~v~~----------vd~~~~~~~~v~~i~~-------~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~  374 (567)
T 1qks_A          321 KILL----------VDYTDLNNLKTTEISA-------ERFLHDGGLDGSHRYFITAANARNKLVVIDTKEG  374 (567)
T ss_dssp             EEEE----------EETTCSSEEEEEEEEC-------CSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTT
T ss_pred             eEEE----------EecCCCccceeeeeec-------cccccCceECCCCCEEEEEeCCCCeEEEEECCCC
Confidence            7777          4543321  1111111       11111246788998876554 4455666776543

>4gni_A Putative heat shock protein; HSP70-type ATPase, ATP binding protein, magnesium binding, C translational chaperone; HET: ATP; 1.80A {Chaetomium thermophilum var}

Probab=98.80  E-value=3.2e-09  Score=97.32  Aligned_cols=106  Identities=24%  Similarity=0.298  Sum_probs=96.9

Q ss_pred             cCCCcChhHHHHHHHHHhhhhhhccccceeeEEEecccCCcccccccChHHHHHHHHHHhhhhhhhhHhhhccccceeeE
Q psy4650         249 LDISDSHRSVAKLRAAAETCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIGGLLTSFVQPCMHVLSTLQSSNVF  328 (381)
Q Consensus       249 ~d~~~~~~~~~~l~~~~e~ak~~lS~~~~~~i~~~~l~~g~~~~~~itr~~fe~l~~~l~~~~~~~~~~~Ls~~~~~~~~  328 (381)
                      .+...+.+.+.+|+.++|++|+.||...++.+.++++++|.++...++|++|++++.+++.++.+.++++|..+   .+.
T Consensus       265 ~~~~~~~~~~~~l~~~ae~~K~~ls~~~~~~i~i~~~~~~~~~~~~itr~~~~~~~~~~~~~i~~~i~~~l~~~---~~~  341 (409)
T 4gni_A          265 KDPRENPRSLAKLRLEAESTKRALSRSTNASFSVESLIDGLDFASTINRLRYETIARTVFEGFNRLVESAVKKA---GLD  341 (409)
T ss_dssp             CCGGGSHHHHHHHHHHHHHHHHHHHHSSEEEEEEEEEETTEEEEEEEEHHHHHHHTHHHHHHHHHHHHHHHHHT---TCC
T ss_pred             CCcccCHHHHHHHHHHHHHHHHhCCCCCceEEEeecccCCcceEEEeeHHHHHHHHHHHHHHHHHHHHHHHHHc---CCC
Confidence            56677889999999999999999999999999999999999999999999999999999999999999999874   444


Q ss_pred             eeccccCcceEEeecHHHHHHHHHHHHHH
Q psy4650         329 VESLYDGLDFHHNVSRARFESLIGGLLTS  357 (381)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~~  357 (381)
                      ...+..++++||+.+.|.+++++++.|+.
T Consensus       342 ~~~i~~V~LvGG~s~~p~v~~~l~~~f~~  370 (409)
T 4gni_A          342 PLDVDEVIMSGGTSNTPRIAANFRYIFPE  370 (409)
T ss_dssp             GGGCCEEEEESGGGGCHHHHHHHHHHSCT
T ss_pred             HHHCCEEEEECCccccHHHHHHHHHHcCC
Confidence            56677888999999999999999999974

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=98.79  E-value=2e-06  Score=74.56  Aligned_cols=195  Identities=9%  Similarity=-0.033  Sum_probs=122.8

Q ss_pred             hcceeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCe
Q psy4650          34 ETKVDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKT  113 (381)
Q Consensus        34 ~~~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~  113 (381)
                      ..+..+...+++. +.++...++.|..|++. .. .....+..+...+.++++.+++.  +.++...++.|..|+.....
T Consensus        15 ~~~~~i~~d~~g~-l~v~~~~~~~v~~~d~~-~~-~~~~~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~i~~~~~~g~~   89 (299)
T 2z2n_A           15 TGPYGITVSDKGK-VWITQHKANMISCINLD-GK-ITEYPLPTPDAKVMCLTISSDGE--VWFTENAANKIGRITKKGII   89 (299)
T ss_dssp             CCEEEEEECTTSC-EEEEETTTTEEEEECTT-CC-EEEEECSSTTCCEEEEEECTTSC--EEEEETTTTEEEEECTTSCE
T ss_pred             CCccceEECCCCC-EEEEecCCCcEEEEcCC-CC-eEEecCCcccCceeeEEECCCCC--EEEeCCCCCeEEEECCCCcE
Confidence            3567777777644 55555557899999986 22 22222334557899999988776  66776778899999986322


Q ss_pred             EEEEeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeE-EEecCCcceEEEEEcCCCCEEEEEeCCCeEEEEe
Q psy4650         114 CVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEI-SLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKV  192 (381)
Q Consensus       114 ~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~-~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~  192 (381)
                      ....+......+.++++.|++.++++...++.|..||. ++.... ........+..+++.++|...++...++.+..  
T Consensus        90 ~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~--  166 (299)
T 2z2n_A           90 KEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGR--  166 (299)
T ss_dssp             EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEE--
T ss_pred             EEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEE--
Confidence            22222234557899999999988887777889999998 554432 22334456889999999987777666677776  


Q ss_pred             cCCCceEEEecCCCEEEE-EecCceeecccccCCccccccCCceEEeeehHHHHHhccCC
Q psy4650         193 GREEPAVSMDVNGCKIIW-ARHSEVQQANLKTMPEVFENITAGVVLTLSVHVTIKYRLDI  251 (381)
Q Consensus       193 ~~~~~~~~~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~d~~~~~~d~  251 (381)
                              +|. ++.... .....      ......+.+.++|...+..........++.
T Consensus       167 --------~~~-~g~~~~~~~~~~------~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~  211 (299)
T 2z2n_A          167 --------ITE-SGDITEFKIPTP------ASGPVGITKGNDDALWFVEIIGNKIGRITT  211 (299)
T ss_dssp             --------ECT-TCCEEEEECSST------TCCEEEEEECTTSSEEEEETTTTEEEEECT
T ss_pred             --------EcC-CCcEEEeeCCCC------CCcceeEEECCCCCEEEEccCCceEEEECC
Confidence                    665 333221 11100      011112455667775555444455556665

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=98.74  E-value=1.9e-07  Score=91.60  Aligned_cols=107  Identities=9%  Similarity=-0.005  Sum_probs=80.6

Q ss_pred             cccccEEEEEeeeCCCccEEE-----EEcCCCeEEEEECCCCeEEEEeccCCCCE--EEEEEecCCCEEEEEeCCCC---
Q psy4650          76 GHEKGVNCVDYYHGGDKPYLI-----SGADDRLVKIWDYQNKTCVQTLEGHGQNI--SAVCFHPELPIVITGSEDGS---  145 (381)
Q Consensus        76 ~h~~~v~~~~~~~~~~~~~l~-----s~~~d~~v~vwd~~~~~~~~~~~~~~~~v--~~~~~~p~~~~l~s~~~d~~---  145 (381)
                      +|...+.+++|||+|.  +|+     +|+.+.+|++||+.+++.+.  ..+...+  ..++|+|+|+.|+.++.|..   
T Consensus       118 ~~~~~~~~~~~SPDG~--~la~~~~~~G~~~~~i~v~dl~tg~~~~--~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~  193 (695)
T 2bkl_A          118 DGTVSLGTWAVSWDGK--KVAFAQKPNAADEAVLHVIDVDSGEWSK--VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSI  193 (695)
T ss_dssp             SSCEEEEEEEECTTSS--EEEEEEEETTCSCCEEEEEETTTCCBCS--SCCBSCCTTCCCEECTTSSEEEEEECCCCTTS
T ss_pred             CCCEEEEEEEECCCCC--EEEEEECCCCCceEEEEEEECCCCCCcC--CcccCcccccceEEecCCCEEEEEEecCCCCC
Confidence            5666799999999988  566     44556799999999987541  1122222  68999999999999988776   


Q ss_pred             ----------EEEEeCCCCee----eEEEecCCcceEEEEEcCCCCEEEEEeCCC
Q psy4650         146 ----------VRVWHSGTHRL----EISLTYGLERVWTISSLKGSNNVAIGYDEG  186 (381)
Q Consensus       146 ----------i~vwd~~~~~~----~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg  186 (381)
                                |++|++.++..    +.....+...+..+.|+|+|++++.++.++
T Consensus       194 ~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~  248 (695)
T 2bkl_A          194 KVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRG  248 (695)
T ss_dssp             CGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEET
T ss_pred             ccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCC
Confidence                      99999998763    222233445788999999999888877665

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=98.73  E-value=4.6e-07  Score=89.15  Aligned_cols=141  Identities=9%  Similarity=0.027  Sum_probs=94.4

Q ss_pred             eeeecCCCceEEEEEecCC----eEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCe----------
Q psy4650          38 DITTNKDMIEYKISYQESS----RVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRL----------  103 (381)
Q Consensus        38 ~i~~~~~~~~~~~s~~~d~----~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~----------  103 (381)
                      .+.+++++..+.++.+.+|    .|++||+....... ..+.+  ..+.+++|+|++.  .|+.++.++.          
T Consensus       129 ~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~-~~~~~--~~~~~~~wspDg~--~l~~~~~~~~~~~~~~~~~~  203 (710)
T 2xdw_A          129 GYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELP-DVLER--VKFSCMAWTHDGK--GMFYNAYPQQDGKSDGTETS  203 (710)
T ss_dssp             EEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEE-EEEEE--ECSCCEEECTTSS--EEEEEECCCCSSCCSSSCCC
T ss_pred             EEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCc-ccccC--cccceEEEEeCCC--EEEEEEECCccccccccccc
Confidence            4567777665555555444    89999987532221 12222  2367899999887  6777776655          


Q ss_pred             ------EEEEECCCCeE--EEEe--ccCCCCEEEEEEecCCCEEEEEeC-----CCCEEEEeCCC------Ce-eeEEEe
Q psy4650         104 ------VKIWDYQNKTC--VQTL--EGHGQNISAVCFHPELPIVITGSE-----DGSVRVWHSGT------HR-LEISLT  161 (381)
Q Consensus       104 ------v~vwd~~~~~~--~~~~--~~~~~~v~~~~~~p~~~~l~s~~~-----d~~i~vwd~~~------~~-~~~~~~  161 (381)
                            |.+|++.++..  ...+  ..|...+..+.|+|+|++++.++.     +..|.+||+.+      +. ....+.
T Consensus       204 ~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~  283 (710)
T 2xdw_A          204 TNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLI  283 (710)
T ss_dssp             CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEE
T ss_pred             cCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEee
Confidence                  99999988752  2223  335566889999999998877654     56899999986      53 355565


Q ss_pred             cCCcceEEEEEcCCCCEEEEEeC
Q psy4650         162 YGLERVWTISSLKGSNNVAIGYD  184 (381)
Q Consensus       162 ~~~~~v~~v~~~~~~~~l~~~~~  184 (381)
                      .+...+.. .|+|+|..++..+.
T Consensus       284 ~~~~~~~~-~~s~dg~~l~~~s~  305 (710)
T 2xdw_A          284 DNFEGEYD-YVTNEGTVFTFKTN  305 (710)
T ss_dssp             CSSSSCEE-EEEEETTEEEEEEC
T ss_pred             CCCCcEEE-EEeccCCEEEEEEC
Confidence            55555554 47888887776654

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=98.72  E-value=7.5e-07  Score=77.51  Aligned_cols=144  Identities=10%  Similarity=-0.023  Sum_probs=102.8

Q ss_pred             ceeeeecCCCceEEEEE----e-------------cCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEE
Q psy4650          36 KVDITTNKDMIEYKISY----Q-------------ESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISG   98 (381)
Q Consensus        36 ~~~i~~~~~~~~~~~s~----~-------------~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~   98 (381)
                      +..+...+++ .+.++.    .             ..+.|..+++.    ..+..+..+.....+++|+|++.  .+++.
T Consensus       117 ~~~i~~d~~G-~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~----g~~~~~~~~~~~~~gi~~s~dg~--~lv~~  189 (296)
T 3e5z_A          117 PNDVCLAPDG-SLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD----GTLSAPIRDRVKPNGLAFLPSGN--LLVSD  189 (296)
T ss_dssp             CCCEEECTTS-CEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT----SCEEEEECCCSSEEEEEECTTSC--EEEEE
T ss_pred             CCCEEECCCC-CEEEECCccccccccccccccccCCCcEEEEECCC----CCEEEeecCCCCCccEEECCCCC--EEEEe
Confidence            4567777764 455552    2             13467777764    12334456677789999999887  56888


Q ss_pred             cCCCeEEEEECC-CCeE---EEEeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEecCCcceEEEEE-c
Q psy4650          99 ADDRLVKIWDYQ-NKTC---VQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISS-L  173 (381)
Q Consensus        99 ~~d~~v~vwd~~-~~~~---~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~-~  173 (381)
                      +.++.|.+|++. ++..   ...+..+...+.+++++++|.++++.  ++.|.+||.. ++.+..+..+.. +.+++| .
T Consensus       190 ~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~~~~~~~~~-~~~~~f~~  265 (296)
T 3e5z_A          190 TGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GDELGRVLTPQT-TSNLCFGG  265 (296)
T ss_dssp             TTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SCEEEEEECSSC-CCEEEEES
T ss_pred             CCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-CCEEEEEECCCC-ceeEEEEC
Confidence            889999999986 4443   33333345566789999999877666  7889999986 777777776666 889999 5


Q ss_pred             CCCCEEEEEeCCCeEEE
Q psy4650         174 KGSNNVAIGYDEGSVLL  190 (381)
Q Consensus       174 ~~~~~l~~~~~dg~v~i  190 (381)
                      |+++.|.+++.++.+++
T Consensus       266 ~d~~~L~v~t~~~l~~~  282 (296)
T 3e5z_A          266 PEGRTLYMTVSTEFWSI  282 (296)
T ss_dssp             TTSCEEEEEETTEEEEE
T ss_pred             CCCCEEEEEcCCeEEEE
Confidence            88888888887765553

>2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus HTA426}

Probab=98.70  E-value=9.4e-09  Score=96.65  Aligned_cols=110  Identities=18%  Similarity=0.244  Sum_probs=95.6

Q ss_pred             HHhccCCCcChhHHHHHHHHHhhhhhhccccceeeEEEecccC---C-cccccccChHHHHHHHHHHhhhhhhhhHhhhc
Q psy4650         245 IKYRLDISDSHRSVAKLRAAAETCMHVLSTLQSSNVFVESLYD---G-LDFHHNVSRARFESLIGGLLTSFVQPCMHVLS  320 (381)
Q Consensus       245 ~~~~~d~~~~~~~~~~l~~~~e~ak~~lS~~~~~~i~~~~l~~---g-~~~~~~itr~~fe~l~~~l~~~~~~~~~~~Ls  320 (381)
                      ..+..++..+++++++++.++|++|+.||...++.+.++.+++   | .++...++|++|++++.+++.++.++++++|.
T Consensus       215 ~~~~~~~~~~~~~~~~l~~~aE~~K~~ls~~~~~~i~l~~~~~~~~G~~~~~~~itr~~fe~l~~~~~~~i~~~i~~~L~  294 (509)
T 2v7y_A          215 QEHGIDLSKDKMALQRLKDAAEKAKKELSGVTQTQISLPFISANENGPLHLEMTLTRAKFEELSAHLVERTMGPVRQALQ  294 (509)
T ss_dssp             HHHSCCGGGCHHHHHHHHHHHHHHHHHTTTCSEEEEEEEEEEEETTEEEEEEEEEEHHHHHHHTHHHHHTTHHHHHHHHH
T ss_pred             HHhCCCcccCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCCCCCeeEEEEEEHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455677778889999999999999999999999999987765   3 56788999999999999999999999999998


Q ss_pred             cccceeeEeeccccCcceEEeecHHHHHHHHHHHHHH
Q psy4650         321 TLQSSNVFVESLYDGLDFHHNVSRARFESLIGGLLTS  357 (381)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~  357 (381)
                      .+   .+....+..++++||+.+.|.+++++++.|++
T Consensus       295 ~a---~~~~~~i~~VvLvGG~s~~p~v~~~l~~~f~~  328 (509)
T 2v7y_A          295 DA---GLTPADIDKVILVGGSTRIPAVQEAIKRELGK  328 (509)
T ss_dssp             HH---TCCGGGCSEEEEESGGGGCHHHHHHHHHHHSS
T ss_pred             Hc---CCChhHCcEEEEECCcccChHHHHHHHHHhCC
Confidence            84   44556678889999999999999999999974

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=98.68  E-value=6.9e-06  Score=71.05  Aligned_cols=150  Identities=8%  Similarity=0.003  Sum_probs=104.2

Q ss_pred             hcceeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCe
Q psy4650          34 ETKVDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKT  113 (381)
Q Consensus        34 ~~~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~  113 (381)
                      ..+..+...+++ .+.++...++.+..|++..  ......+..+...+.++.+.+++.  ++++...++.|..||. ++.
T Consensus        57 ~~~~~i~~~~~g-~l~v~~~~~~~i~~~~~~g--~~~~~~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~i~~~d~-~g~  130 (299)
T 2z2n_A           57 AKVMCLTISSDG-EVWFTENAANKIGRITKKG--IIKEYTLPNPDSAPYGITEGPNGD--IWFTEMNGNRIGRITD-DGK  130 (299)
T ss_dssp             CCEEEEEECTTS-CEEEEETTTTEEEEECTTS--CEEEEECSSTTCCEEEEEECTTSC--EEEEETTTTEEEEECT-TCC
T ss_pred             CceeeEEECCCC-CEEEeCCCCCeEEEECCCC--cEEEEeCCCcCCCceeeEECCCCC--EEEEecCCceEEEECC-CCC
Confidence            456677777664 4566666678899999852  121222333456789999988765  6777777889999998 554


Q ss_pred             EEE-EeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEE-EecCCcceEEEEEcCCCCEEEEEeCCCeEEE
Q psy4650         114 CVQ-TLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEIS-LTYGLERVWTISSLKGSNNVAIGYDEGSVLL  190 (381)
Q Consensus       114 ~~~-~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~-~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i  190 (381)
                      ... ....+...+.++++.|++..+++...++.|..||. +++.... .......+.+++++++|.+.++...++.+..
T Consensus       131 ~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~  208 (299)
T 2z2n_A          131 IREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGR  208 (299)
T ss_dssp             EEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEE
T ss_pred             EEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEE
Confidence            332 23334557899999999988877777789999999 6655432 2334456889999999887776666777777

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.68  E-value=4.4e-07  Score=82.17  Aligned_cols=124  Identities=7%  Similarity=-0.095  Sum_probs=81.2

Q ss_pred             ecCCeEEEecCCCccceeeEeeccccccEEEEEeee-CCCccEEEEEcCC------CeEEEEECCCCeEEEEeccC-CCC
Q psy4650          53 QESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYH-GGDKPYLISGADD------RLVKIWDYQNKTCVQTLEGH-GQN  124 (381)
Q Consensus        53 ~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~-~~~~~~l~s~~~d------~~v~vwd~~~~~~~~~~~~~-~~~  124 (381)
                      ..+..+.+|++....   ...+..+...+..+.|+| ++.  .|+.++.+      ..|.+||..++......... ...
T Consensus       165 ~~~~~l~~~d~~~g~---~~~~~~~~~~~~~~~~sp~dg~--~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~  239 (396)
T 3c5m_A          165 NPTCRLIKVDIETGE---LEVIHQDTAWLGHPIYRPFDDS--TVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGES  239 (396)
T ss_dssp             CCCEEEEEEETTTCC---EEEEEEESSCEEEEEEETTEEE--EEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEE
T ss_pred             CCcceEEEEECCCCc---EEeeccCCcccccceECCCCCC--EEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCcc
Confidence            345678889886432   233345677899999999 665  34444332      46888898766543333321 235


Q ss_pred             EEEEEEecCCCEEEEEeCC-----CCEEEEeCCCCeeeEEEecCCcceEEEEEcC-CCCEEEEEeC
Q psy4650         125 ISAVCFHPELPIVITGSED-----GSVRVWHSGTHRLEISLTYGLERVWTISSLK-GSNNVAIGYD  184 (381)
Q Consensus       125 v~~~~~~p~~~~l~s~~~d-----~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~-~~~~l~~~~~  184 (381)
                      +..++|+|+|+.|+.++.+     +.|.+||+.+++........  ... +.|+| +|+.++.++.
T Consensus       240 ~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~--~~~-~~~s~~dg~~l~~~~~  302 (396)
T 3c5m_A          240 CTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMP--PCS-HLMSNFDGSLMVGDGC  302 (396)
T ss_dssp             EEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECC--SEE-EEEECSSSSEEEEEEC
T ss_pred             ccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCC--CCC-CCccCCCCceEEEecC
Confidence            7889999999977766443     34999999988654433222  123 88999 9998887653

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=98.68  E-value=2.3e-06  Score=84.16  Aligned_cols=161  Identities=8%  Similarity=-0.076  Sum_probs=106.8

Q ss_pred             eeeeecCCCceEEEEEecCCe----------------EEEecCCCccc--eeeEeeccccccEEEEEeeeCCCccEEEEE
Q psy4650          37 VDITTNKDMIEYKISYQESSR----------------VKAFNPIQVAT--LILKTLYGHEKGVNCVDYYHGGDKPYLISG   98 (381)
Q Consensus        37 ~~i~~~~~~~~~~~s~~~d~~----------------v~i~~~~~~~~--~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~   98 (381)
                      ..+.+.+++..+++ ++.++.                |++|++.+...  ..+.....|...+.++.|+|+|.  +|+.+
T Consensus       174 ~~~~wspDg~~l~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~--~l~~~  250 (710)
T 2xdw_A          174 SCMAWTHDGKGMFY-NAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGR--YVLLS  250 (710)
T ss_dssp             CCEEECTTSSEEEE-EECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSC--EEEEE
T ss_pred             ceEEEEeCCCEEEE-EEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCC--EEEEE
Confidence            34667777554444 444444                99999865332  23334444667788999999987  56554


Q ss_pred             cC-----CCeEEEEECCC------Ce-EEEEeccCCCCEEEEEEecCCCEEEEEeCC----CCEEEEeCCCCee--eEEE
Q psy4650          99 AD-----DRLVKIWDYQN------KT-CVQTLEGHGQNISAVCFHPELPIVITGSED----GSVRVWHSGTHRL--EISL  160 (381)
Q Consensus        99 ~~-----d~~v~vwd~~~------~~-~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d----~~i~vwd~~~~~~--~~~~  160 (381)
                      +.     +..|.+||+.+      +. ....+..+...+.. .|+|+|..++..+..    +.|.+||+.++..  ...+
T Consensus       251 ~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l  329 (710)
T 2xdw_A          251 IREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVL  329 (710)
T ss_dssp             EECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEE
T ss_pred             EEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceec
Confidence            43     67899999976      42 34556556655554 588999877666543    3699999987742  3444


Q ss_pred             ecCCc--ceEEEEEcCCCCEEEEEeCCCeEEEEecCCCceEEEecCCCEEE
Q psy4650         161 TYGLE--RVWTISSLKGSNNVAIGYDEGSVLLKVGREEPAVSMDVNGCKII  209 (381)
Q Consensus       161 ~~~~~--~v~~v~~~~~~~~l~~~~~dg~v~i~~~~~~~~~~~d~~~~~~~  209 (381)
                      ..+..  .+..+.|++++.++++...++..++|.        |+..+|..+
T Consensus       330 ~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~--------~~~~~g~~~  372 (710)
T 2xdw_A          330 VPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQL--------HDLATGALL  372 (710)
T ss_dssp             ECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEE--------EETTTCCEE
T ss_pred             cCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEE--------EECCCCCEE
Confidence            44433  678899998888888888899777754        666445433

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=98.64  E-value=9.4e-07  Score=78.60  Aligned_cols=137  Identities=8%  Similarity=0.075  Sum_probs=85.5

Q ss_pred             ceeeeecCCCceEEEEEecC--C--eEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcC-----------
Q psy4650          36 KVDITTNKDMIEYKISYQES--S--RVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGAD-----------  100 (381)
Q Consensus        36 ~~~i~~~~~~~~~~~s~~~d--~--~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~-----------  100 (381)
                      ...+...|++..+.+.....  +  .+.+|++....  . ..+..+.. +.++.|+|++.  .|+.++.           
T Consensus        61 ~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~--~-~~l~~~~~-~~~~~wspdg~--~l~~~~~~~~~~~~~~~~  134 (347)
T 2gop_A           61 ATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLS--S-KKILEAKN-IRSLEWNEDSR--KLLIVGFKRREDEDFIFE  134 (347)
T ss_dssp             CEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTE--E-EEEEEESE-EEEEEECTTSS--EEEEEEECCCC-------
T ss_pred             CCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCc--e-EEEEcCCC-ccceeECCCCC--EEEEEEccCCCcCCcEEE
Confidence            34567777765444444332  3  36777775422  2 22333334 99999999887  5665542           


Q ss_pred             ----------------CCeEEEEECCCCeEEEEeccCCCCEEEEEEecCCCEEEEEeCCC-------CEEEEeCCCCeee
Q psy4650         101 ----------------DRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPIVITGSEDG-------SVRVWHSGTHRLE  157 (381)
Q Consensus       101 ----------------d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~-------~i~vwd~~~~~~~  157 (381)
                                      ...|.+||+.+++.+..+.. . .+..++|+|+| .++++..++       ...+|.+.+++..
T Consensus       135 ~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~~  211 (347)
T 2gop_A          135 DDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKEE  211 (347)
T ss_dssp             --CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEEE
T ss_pred             cccceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCceE
Confidence                            25788999998876455544 3 77899999999 777776542       3455544455543


Q ss_pred             EEEecCCcceEEEEEcCCCCEEEEEeCC
Q psy4650         158 ISLTYGLERVWTISSLKGSNNVAIGYDE  185 (381)
Q Consensus       158 ~~~~~~~~~v~~v~~~~~~~~l~~~~~d  185 (381)
                       .+..+ ..+..+  +|+|+.++.++.+
T Consensus       212 -~l~~~-~~~~~~--spdg~~l~~~~~~  235 (347)
T 2gop_A          212 -KMFEK-VSFYAV--DSDGERILLYGKP  235 (347)
T ss_dssp             -EEEEE-ESEEEE--EECSSCEEEEECC
T ss_pred             -EeccC-cceeeE--CCCCCEEEEEEcc
Confidence             33333 445444  8999988877754

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=98.64  E-value=3.5e-06  Score=73.65  Aligned_cols=150  Identities=7%  Similarity=0.054  Sum_probs=103.6

Q ss_pred             cceeeeecCCCceEEEEEecC---------------CeEEEecCCCccceeeEeeccccccEEEEEee----eCCCccEE
Q psy4650          35 TKVDITTNKDMIEYKISYQES---------------SRVKAFNPIQVATLILKTLYGHEKGVNCVDYY----HGGDKPYL   95 (381)
Q Consensus        35 ~~~~i~~~~~~~~~~~s~~~d---------------~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~----~~~~~~~l   95 (381)
                      .+..+...+++. +.++...+               +.+..|++..   . ...+..+......++|+    |++.. ++
T Consensus       118 ~~~~i~~d~~g~-l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g---~-~~~~~~~~~~~~~i~~~~~~d~dg~~-l~  191 (314)
T 1pjx_A          118 GCNDCAFDYEGN-LWITAPAGEVAPADYTRSMQEKFGSIYCFTTDG---Q-MIQVDTAFQFPNGIAVRHMNDGRPYQ-LI  191 (314)
T ss_dssp             CCCEEEECTTSC-EEEEECBCBCTTSCCCBTTSSSCEEEEEECTTS---C-EEEEEEEESSEEEEEEEECTTSCEEE-EE
T ss_pred             CCcCEEECCCCC-EEEEecCcccccccccccccCCCCeEEEECCCC---C-EEEeccCCCCcceEEEecccCCCCCE-EE
Confidence            466777777754 44554443               5777887641   1 12233344567889999    87642 45


Q ss_pred             EEEcCCCeEEEEECC-CCe-----EEEEeccCC-CCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEecCCcceE
Q psy4650          96 ISGADDRLVKIWDYQ-NKT-----CVQTLEGHG-QNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVW  168 (381)
Q Consensus        96 ~s~~~d~~v~vwd~~-~~~-----~~~~~~~~~-~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~  168 (381)
                      ++...++.|.+|+.. ++.     ....+.++. .....++++++|.++++...++.|.+||..+++....+..+...+.
T Consensus       192 v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~  271 (314)
T 1pjx_A          192 VAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPS  271 (314)
T ss_dssp             EEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEE
T ss_pred             EEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCCCCce
Confidence            566678999999976 443     223344443 5678899999999888887888999999987877777776667899


Q ss_pred             EEEEcCCCCEEEEE-eCCCeEEE
Q psy4650         169 TISSLKGSNNVAIG-YDEGSVLL  190 (381)
Q Consensus       169 ~v~~~~~~~~l~~~-~~dg~v~i  190 (381)
                      +++++|+|..|..+ ..++.+..
T Consensus       272 ~i~~~~dg~~l~v~~~~~~~l~~  294 (314)
T 1pjx_A          272 NLHFKPQTKTIFVTEHENNAVWK  294 (314)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEE
T ss_pred             eEEECCCCCEEEEEeCCCCeEEE
Confidence            99999999855544 44566655

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.63  E-value=3.2e-09  Score=95.94  Aligned_cols=146  Identities=14%  Similarity=0.068  Sum_probs=78.2

Q ss_pred             eEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEEEeccCCCC-E
Q psy4650          47 EYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQN-I  125 (381)
Q Consensus        47 ~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~-v  125 (381)
                      ..++.++.|+.++.||..+  ...+..+..  +.+.+..+..++.  .+++++.|+.|..||..+|+.+..+..+... +
T Consensus        10 ~~v~~gs~dg~v~a~d~~t--G~~~W~~~~--~~~~s~p~~~~g~--~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~   83 (369)
T 2hz6_A           10 TLLFVSTLDGSLHAVSKRT--GSIKWTLKE--DPVLQVPTHVEEP--AFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELV   83 (369)
T ss_dssp             TEEEEEETTSEEEEEETTT--CCEEEEEEC--CCSCCCC-----C--CEEECTTTCCEEEC-----CCSEECSCCHHHHH
T ss_pred             CEEEEEcCCCEEEEEECCC--CCEEEEecC--CCceecceEcCCC--EEEEeCCCCEEEEEECCCCceeeeeeccCcccc
Confidence            4678889999999999864  445555554  4555555555544  5777889999999999998876666533211 1


Q ss_pred             E-EEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCceEEEecC
Q psy4650         126 S-AVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKVGREEPAVSMDVN  204 (381)
Q Consensus       126 ~-~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~~~~~~~~~~d~~  204 (381)
                      . +..+. .+..+++++.|+.+..||..+|+.++.+..+.    ...++|.+..+++++.++.+..          ||..
T Consensus        84 ~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a----------~d~~  148 (369)
T 2hz6_A           84 QASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYTITM----------YDTK  148 (369)
T ss_dssp             TTCSCC------CCCCEEEEEEEEECCC--------------------------EEEEEEEEEEEC----------CCSS
T ss_pred             ccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCEEEE----------EECC
Confidence            0 00011 34466777889999999999999988776543    2345667788888888888887          8888


Q ss_pred             CCEEEEEec
Q psy4650         205 GCKIIWARH  213 (381)
Q Consensus       205 ~~~~~~~~~  213 (381)
                      +|..+|...
T Consensus       149 tG~~~W~~~  157 (369)
T 2hz6_A          149 TRELRWNAT  157 (369)
T ss_dssp             SSSCCCEEE
T ss_pred             CCCEEEeEe
Confidence            888888754

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=98.63  E-value=1.4e-05  Score=69.11  Aligned_cols=150  Identities=9%  Similarity=-0.046  Sum_probs=104.3

Q ss_pred             hcceeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCe
Q psy4650          34 ETKVDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKT  113 (381)
Q Consensus        34 ~~~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~  113 (381)
                      ..+..+...+++. +.++...++.|.+|++. .. .....+..+...+.++.+.+++.  +.++...++.|..+|.. +.
T Consensus        20 ~~p~~i~~d~~g~-l~v~~~~~~~v~~~~~~-~~-~~~~~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~v~~~d~~-g~   93 (300)
T 2qc5_A           20 SGPYGITSSEDGK-VWFTQHKANKISSLDQS-GR-IKEFEVPTPDAKVMCLIVSSLGD--IWFTENGANKIGKLSKK-GG   93 (300)
T ss_dssp             CCEEEEEECTTSC-EEEEETTTTEEEEECTT-SC-EEEEECSSTTCCEEEEEECTTSC--EEEEETTTTEEEEECTT-SC
T ss_pred             CCcceeeECCCCC-EEEEcCCCCeEEEECCC-Cc-eEEEECCCCCCcceeEEECCCCC--EEEEecCCCeEEEECCC-CC
Confidence            4567787777644 55565667899999986 22 21223344456789999988765  66676678899999987 54


Q ss_pred             EE-EEeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeE-EEecCCcceEEEEEcCCCCEEEEEeCCCeEEE
Q psy4650         114 CV-QTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEI-SLTYGLERVWTISSLKGSNNVAIGYDEGSVLL  190 (381)
Q Consensus       114 ~~-~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~-~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i  190 (381)
                      .. ..+......+.++++.+++.++++...++.|..||.. ++... .+......+..+++.++|++.++...++.+..
T Consensus        94 ~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~  171 (300)
T 2qc5_A           94 FTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGR  171 (300)
T ss_dssp             EEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEE
T ss_pred             eEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEE
Confidence            32 2223234678999999999888877768889999987 55442 23334457889999999986666665677776

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=98.62  E-value=1.7e-06  Score=76.60  Aligned_cols=159  Identities=8%  Similarity=-0.027  Sum_probs=106.6

Q ss_pred             cceeeeecCCCceEEEEEe-cCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCC----------Ce
Q psy4650          35 TKVDITTNKDMIEYKISYQ-ESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADD----------RL  103 (381)
Q Consensus        35 ~~~~i~~~~~~~~~~~s~~-~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d----------~~  103 (381)
                      .+..+..  ++..+.++.. .+++|.+||+..  ...+..+.. ......+.++|++.  +++++..+          +.
T Consensus       132 ~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t--~~~~~~i~~-g~~p~~i~~~~dG~--l~v~~~~~~~~~~~~~~~~~  204 (328)
T 3dsm_A          132 STEQMVQ--YGKYVYVNCWSYQNRILKIDTET--DKVVDELTI-GIQPTSLVMDKYNK--MWTITDGGYEGSPYGYEAPS  204 (328)
T ss_dssp             BCCCEEE--ETTEEEEEECTTCCEEEEEETTT--TEEEEEEEC-SSCBCCCEECTTSE--EEEEBCCBCTTCSSCBCCCE
T ss_pred             CcceEEE--ECCEEEEEcCCCCCEEEEEECCC--CeEEEEEEc-CCCccceEEcCCCC--EEEEECCCccCCccccCCce
Confidence            3444444  2234444444 588999999874  334444443 23346788888765  56666554          79


Q ss_pred             EEEEECCCCeEEEEeccC-CCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEE--EecCCcceEEEEEcC-CCCEE
Q psy4650         104 VKIWDYQNKTCVQTLEGH-GQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEIS--LTYGLERVWTISSLK-GSNNV  179 (381)
Q Consensus       104 v~vwd~~~~~~~~~~~~~-~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~--~~~~~~~v~~v~~~~-~~~~l  179 (381)
                      |.++|..+++....+... ......++|+|++..+..+..  .|.+||..+++....  +.........++++| ++.+.
T Consensus       205 v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~ly  282 (328)
T 3dsm_A          205 LYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVY  282 (328)
T ss_dssp             EEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEE
T ss_pred             EEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEE
Confidence            999999999877666532 235799999999998877654  899999988875321  111235688999999 56666


Q ss_pred             EEE----eCCCeEEEEecCCCceEEEecCCCEEEEEec
Q psy4650         180 AIG----YDEGSVLLKVGREEPAVSMDVNGCKIIWARH  213 (381)
Q Consensus       180 ~~~----~~dg~v~i~~~~~~~~~~~d~~~~~~~~~~~  213 (381)
                      ++.    ..++.|.+          ||.. ++.++.+.
T Consensus       283 va~~~~y~~~~~V~v----------~d~~-g~~~~~i~  309 (328)
T 3dsm_A          283 VADAIDYQQQGIVYR----------YSPQ-GKLIDEFY  309 (328)
T ss_dssp             EEECTTSSSEEEEEE----------ECTT-CCEEEEEE
T ss_pred             EEcccccccCCEEEE----------ECCC-CCEEEEEE
Confidence            665    56788888          7776 66666553

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=98.60  E-value=2.1e-06  Score=78.54  Aligned_cols=201  Identities=12%  Similarity=0.021  Sum_probs=118.2

Q ss_pred             hcceeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCC--eEEEEECCC
Q psy4650          34 ETKVDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDR--LVKIWDYQN  111 (381)
Q Consensus        34 ~~~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~--~v~vwd~~~  111 (381)
                      ..|+.+..++++. +.++...++.|+.|++..  ..+...... ..... ++|+|++.  .|+.+..++  .|.+|+...
T Consensus       131 ~~P~~la~d~~g~-lyv~d~~~~~I~~id~~~--g~~~~~~~~-~~~~~-ia~~~~g~--~l~~~d~~~~~~I~~~d~~~  203 (409)
T 3hrp_A          131 KYMWGIAAVGNNT-VLAYQRDDPRVRLISVDD--NKVTTVHPG-FKGGK-PAVTKDKQ--RVYSIGWEGTHTVYVYMKAS  203 (409)
T ss_dssp             CCEEEEEECSTTE-EEEEETTTTEEEEEETTT--TEEEEEEET-CCBCB-CEECTTSS--EEEEEBSSTTCEEEEEEGGG
T ss_pred             CCceEEEEeCCCC-EEEEecCCCcEEEEECCC--CEEEEeecc-CCCCc-eeEecCCC--cEEEEecCCCceEEEEEcCC
Confidence            4677888887644 666667778999999863  222222222 22233 88998876  677776655  788888876


Q ss_pred             CeEEEEe----ccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEE----EecCCcce-E-EEEEcCC-CCEEE
Q psy4650         112 KTCVQTL----EGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEIS----LTYGLERV-W-TISSLKG-SNNVA  180 (381)
Q Consensus       112 ~~~~~~~----~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~----~~~~~~~v-~-~v~~~~~-~~~l~  180 (381)
                      +.....+    ......+.+++++|++..|..+..++.|..||..++.....    ..+..... . .++|+|+ +.+++
T Consensus       204 ~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv  283 (409)
T 3hrp_A          204 GWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYM  283 (409)
T ss_dssp             TTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEE
T ss_pred             CceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEE
Confidence            6443333    21345678899999555555577788999999987753322    11111111 2 8899985 55555


Q ss_pred             EEeCCCeEEEEecCCCceEEEecCCCEEEEEecC-cee------ecccccCCccccccCCceEEeeeh-HHHHHhccCC
Q psy4650         181 IGYDEGSVLLKVGREEPAVSMDVNGCKIIWARHS-EVQ------QANLKTMPEVFENITAGVVLTLSV-HVTIKYRLDI  251 (381)
Q Consensus       181 ~~~~dg~v~i~~~~~~~~~~~d~~~~~~~~~~~~-~~~------~~~~~~~~~~~~~~~dg~~l~~~~-~d~~~~~~d~  251 (381)
                      +...++.|+.          |+.++......... ...      .......+..+++.++|.+.++.. ...++..+++
T Consensus       284 ~d~~~~~I~~----------~~~~g~~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~  352 (409)
T 3hrp_A          284 SDQNLSSVYK----------ITPDGECEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDI  352 (409)
T ss_dssp             EETTTTEEEE----------ECTTCCEEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEET
T ss_pred             EeCCCCEEEE----------EecCCCEEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEEC
Confidence            5556666666          66554432222111 000      000012233367788888666655 5556666653

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=98.58  E-value=2.7e-05  Score=67.27  Aligned_cols=150  Identities=10%  Similarity=0.027  Sum_probs=102.5

Q ss_pred             hcceeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCe
Q psy4650          34 ETKVDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKT  113 (381)
Q Consensus        34 ~~~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~  113 (381)
                      ..+..+...+++ .+.++...++.|..|++.. . .....+......+.++++.+++.  +.++...++.|..+|.. +.
T Consensus        62 ~~~~~i~~~~~g-~l~v~~~~~~~v~~~d~~g-~-~~~~~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~i~~~~~~-g~  135 (300)
T 2qc5_A           62 AKVMCLIVSSLG-DIWFTENGANKIGKLSKKG-G-FTEYPLPQPDSGPYGITEGLNGD--IWFTQLNGDRIGKLTAD-GT  135 (300)
T ss_dssp             CCEEEEEECTTS-CEEEEETTTTEEEEECTTS-C-EEEEECSSTTCCEEEEEECSTTC--EEEEETTTTEEEEECTT-SC
T ss_pred             CcceeEEECCCC-CEEEEecCCCeEEEECCCC-C-eEEecCCCCCCCCccceECCCCC--EEEEccCCCeEEEECCC-CC
Confidence            456677777664 4556666678899999862 2 22223333456789999988765  66777778899999987 54


Q ss_pred             EE-EEeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeE-EEecCCcceEEEEEcCCCCEEEEEeCCCeEEE
Q psy4650         114 CV-QTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEI-SLTYGLERVWTISSLKGSNNVAIGYDEGSVLL  190 (381)
Q Consensus       114 ~~-~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~-~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i  190 (381)
                      .. ..+......+.++++.+++..+++...++.|..||. +++... ........+..+++.++|.+.++....+.+..
T Consensus       136 ~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~  213 (300)
T 2qc5_A          136 IYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGR  213 (300)
T ss_dssp             EEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEE
T ss_pred             EEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEE
Confidence            43 223334457899999999997776666788999998 555433 12233456889999998887776666666776

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=98.54  E-value=2.5e-06  Score=83.62  Aligned_cols=150  Identities=9%  Similarity=-0.088  Sum_probs=98.9

Q ss_pred             eeeeecCCCceEEEEEecCCe-------------EEEecCCCccc--eeeEeeccccccEEEEEeeeCCCccEEEEEcCC
Q psy4650          37 VDITTNKDMIEYKISYQESSR-------------VKAFNPIQVAT--LILKTLYGHEKGVNCVDYYHGGDKPYLISGADD  101 (381)
Q Consensus        37 ~~i~~~~~~~~~~~s~~~d~~-------------v~i~~~~~~~~--~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d  101 (381)
                      ..+.+.+++. .++.++.+..             |++|++.+...  ..+....+|...+.++.|+|+|.  +|+.++.+
T Consensus       171 ~~~~wspDg~-~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~--~l~~~~~~  247 (695)
T 2bkl_A          171 ATPKWTPDSK-GFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGK--YLFVYILR  247 (695)
T ss_dssp             CCCEECTTSS-EEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSC--CEEEEEEE
T ss_pred             cceEEecCCC-EEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCC--EEEEEEeC
Confidence            4677777755 4555555554             99999875432  34455556777899999999987  56655555


Q ss_pred             C----eEEEEECCCCeEEEEeccCCCCEEEEEEecCCCEEEEEe---CCCCEEEEeCCCCee--eEEE-ecC-CcceEEE
Q psy4650         102 R----LVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPIVITGS---EDGSVRVWHSGTHRL--EISL-TYG-LERVWTI  170 (381)
Q Consensus       102 ~----~v~vwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~---~d~~i~vwd~~~~~~--~~~~-~~~-~~~v~~v  170 (381)
                      +    .|.+|+..++. ...+..+...+....| ++|..++.+.   .++.|.+||+.++..  ...+ ..+ ...+..+
T Consensus       248 ~~~~~~l~~~~~~~~~-~~~l~~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~  325 (695)
T 2bkl_A          248 GWSENDVYWKRPGEKD-FRLLVKGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSV  325 (695)
T ss_dssp             TTTEEEEEEECTTCSS-CEEEEECSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEE
T ss_pred             CCCceEEEEEcCCCCc-eEEeecCCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEE
Confidence            4    66777665554 3344445555666666 5555444443   257899999987653  2333 333 4467888


Q ss_pred             EEcCCCCEEEEEeCCCeEEEEe
Q psy4650         171 SSLKGSNNVAIGYDEGSVLLKV  192 (381)
Q Consensus       171 ~~~~~~~~l~~~~~dg~v~i~~  192 (381)
                      +++ ++.++++...|+..++|.
T Consensus       326 ~~~-~~~lv~~~~~dg~~~l~~  346 (695)
T 2bkl_A          326 SIV-GGHLSLEYLKDATSEVRV  346 (695)
T ss_dssp             EEE-TTEEEEEEEETTEEEEEE
T ss_pred             EEE-CCEEEEEEEECCEEEEEE
Confidence            888 677888888999998865

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=98.54  E-value=4.5e-06  Score=74.82  Aligned_cols=148  Identities=9%  Similarity=-0.036  Sum_probs=101.7

Q ss_pred             cceeeeecCCCceEEEEEec----CCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEE---------cCC
Q psy4650          35 TKVDITTNKDMIEYKISYQE----SSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISG---------ADD  101 (381)
Q Consensus        35 ~~~~i~~~~~~~~~~~s~~~----d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~---------~~d  101 (381)
                      ......+.+++..+.++-..    ++.|.++|+..  ...+.++..-..+ . +.++|++.. ++++.         ..+
T Consensus        34 ~~~~~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t--~~v~~~I~vG~~P-~-va~spDG~~-lyVan~~~~r~~~G~~~  108 (386)
T 3sjl_D           34 PRILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEA--GRVIGMIDGGFLP-N-PVVADDGSF-IAHASTVFSRIARGERT  108 (386)
T ss_dssp             CCBCCCCCCCTTEEEEEECGGGCSSEEEEEEETTT--TEEEEEEEECSSC-E-EEECTTSSC-EEEEEEEEEETTEEEEE
T ss_pred             cceeeccCCCCCEEEEEcCcccCCCCEEEEEECCC--CeEEEEEECCCCC-c-EEECCCCCE-EEEEcccccccccCCCC
Confidence            33445566676665555554    67999999863  4566666654455 4 999999884 22332         246


Q ss_pred             CeEEEEECCCCeEEEEeccCC-------CCEEEEEEecCCCEEEEEeC--CCCEEEEeCCCCeeeEEEecCCcceEEEEE
Q psy4650         102 RLVKIWDYQNKTCVQTLEGHG-------QNISAVCFHPELPIVITGSE--DGSVRVWHSGTHRLEISLTYGLERVWTISS  172 (381)
Q Consensus       102 ~~v~vwd~~~~~~~~~~~~~~-------~~v~~~~~~p~~~~l~s~~~--d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~  172 (381)
                      +.|.+||..+++.+..+....       ..-..++++|+|+++..+..  ++.|.++|..+++.+.++.....   ...+
T Consensus       109 ~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~---~~~~  185 (386)
T 3sjl_D          109 DYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDC---YHIF  185 (386)
T ss_dssp             EEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE---EEEE
T ss_pred             CEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCc---ceee
Confidence            789999999999888774321       23467999999998887764  68999999999999988864321   1223


Q ss_pred             cCCCCEEEEEeCCCeEEE
Q psy4650         173 LKGSNNVAIGYDEGSVLL  190 (381)
Q Consensus       173 ~~~~~~l~~~~~dg~v~i  190 (381)
                      ....+.+++.+.||.+.+
T Consensus       186 P~g~~~~~~~~~DG~~~~  203 (386)
T 3sjl_D          186 PTAPDTFFMHCRDGSLAK  203 (386)
T ss_dssp             EEETTEEEEEETTSCEEE
T ss_pred             cCCCceeEEECCCCCEEE
Confidence            333456667777888777

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=98.48  E-value=5.4e-05  Score=71.96  Aligned_cols=165  Identities=7%  Similarity=-0.038  Sum_probs=113.4

Q ss_pred             cceeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEee----eCCCccEEEEEcCCCeEEEEECC
Q psy4650          35 TKVDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYY----HGGDKPYLISGADDRLVKIWDYQ  110 (381)
Q Consensus        35 ~~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~----~~~~~~~l~s~~~d~~v~vwd~~  110 (381)
                      .++.+..+++ +.+++.++.++.|.+||+.......+..+.... ....++|+    |+|.. ++++...+++|.++|..
T Consensus       198 ~p~~v~~SpD-Gr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~-~P~~ia~s~~~~pDGk~-l~v~n~~~~~v~ViD~~  274 (567)
T 1qks_A          198 AVHISRLSAS-GRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS-EARSIETSKMEGWEDKY-AIAGAYWPPQYVIMDGE  274 (567)
T ss_dssp             CEEEEEECTT-SCEEEEEETTSEEEEEETTSSSCCEEEEEECCS-EEEEEEECCSTTCTTTE-EEEEEEETTEEEEEETT
T ss_pred             CccceEECCC-CCEEEEEcCCCeEEEEECCCCCCcEeEEEecCC-CCceeEEccccCCCCCE-EEEEEccCCeEEEEECC
Confidence            3456677776 457777889999999998522334555665433 35789999    68763 44555667999999999


Q ss_pred             CCeEEEEecc----------CCC-CEEEEEEecCCCE-EEEEeCCCCEEEEeCCCCeeeEEE-ecCCcceEEEEEcCCCC
Q psy4650         111 NKTCVQTLEG----------HGQ-NISAVCFHPELPI-VITGSEDGSVRVWHSGTHRLEISL-TYGLERVWTISSLKGSN  177 (381)
Q Consensus       111 ~~~~~~~~~~----------~~~-~v~~~~~~p~~~~-l~s~~~d~~i~vwd~~~~~~~~~~-~~~~~~v~~v~~~~~~~  177 (381)
                      +.+.+..+..          |.. .+..+..++++.. +++...+|.|.++|..+...+... .........+.|+|+|+
T Consensus       275 t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr  354 (567)
T 1qks_A          275 TLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHR  354 (567)
T ss_dssp             TCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSC
T ss_pred             CCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCC
Confidence            9988777642          112 5778888888774 455566899999999765432221 12334566789999999


Q ss_pred             EEEEEe-CCCeEEEEecCCCceEEEecCCCEEEEEe
Q psy4650         178 NVAIGY-DEGSVLLKVGREEPAVSMDVNGCKIIWAR  212 (381)
Q Consensus       178 ~l~~~~-~dg~v~i~~~~~~~~~~~d~~~~~~~~~~  212 (381)
                      ++.++. .++.+.+          +|..+++++...
T Consensus       355 ~~~va~~~sn~V~V----------iD~~t~kl~~~i  380 (567)
T 1qks_A          355 YFITAANARNKLVV----------IDTKEGKLVAIE  380 (567)
T ss_dssp             EEEEEEGGGTEEEE----------EETTTTEEEEEE
T ss_pred             EEEEEeCCCCeEEE----------EECCCCcEEEEE
Confidence            876655 5677777          777777766554

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=98.48  E-value=2.3e-05  Score=68.18  Aligned_cols=192  Identities=9%  Similarity=0.009  Sum_probs=113.5

Q ss_pred             eeeecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEEE
Q psy4650          38 DITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQT  117 (381)
Q Consensus        38 ~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~  117 (381)
                      .....++...++++...++.|..|++.....   ..+ .+...+.++++++++.  ++++.  +..|.+||..++.....
T Consensus        17 gp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~---~~~-~~~~~~~~i~~~~dG~--l~v~~--~~~l~~~d~~~g~~~~~   88 (297)
T 3g4e_A           17 SPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV---QRV-TMDAPVSSVALRQSGG--YVATI--GTKFCALNWKEQSAVVL   88 (297)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTCCE---EEE-ECSSCEEEEEEBTTSS--EEEEE--TTEEEEEETTTTEEEEE
T ss_pred             CCeEECCCCEEEEEECCCCEEEEEECCCCcE---EEE-eCCCceEEEEECCCCC--EEEEE--CCeEEEEECCCCcEEEE
Confidence            4455665566777778889999999864322   222 3456799999999876  45443  56899999988864332


Q ss_pred             ecc----CCCCEEEEEEecCCCEEEEEeC---------CCCEEEEeCCC-CeeeEEEecCCcceEEEEEcCCCCEEE-EE
Q psy4650         118 LEG----HGQNISAVCFHPELPIVITGSE---------DGSVRVWHSGT-HRLEISLTYGLERVWTISSLKGSNNVA-IG  182 (381)
Q Consensus       118 ~~~----~~~~v~~~~~~p~~~~l~s~~~---------d~~i~vwd~~~-~~~~~~~~~~~~~v~~v~~~~~~~~l~-~~  182 (381)
                      ...    ....+..++++|+|.++++...         ...-.+|.+.. +... .+.........++|+|+++.+. +.
T Consensus        89 ~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~-~~~~~~~~pngi~~spdg~~lyv~~  167 (297)
T 3g4e_A           89 ATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVK-KYFDQVDISNGLDWSLDHKIFYYID  167 (297)
T ss_dssp             EECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEE-EEEEEESBEEEEEECTTSCEEEEEE
T ss_pred             EecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEE-EEeeccccccceEEcCCCCEEEEec
Confidence            221    1234788999999997665432         13345555543 3332 2322334567899999998664 44


Q ss_pred             eCCCeEEEEecCCCceEEEecCCCEE-----EEEecCceeecccccCCccccccCCceEEeeehHHHHHhccCCC
Q psy4650         183 YDEGSVLLKVGREEPAVSMDVNGCKI-----IWARHSEVQQANLKTMPEVFENITAGVVLTLSVHVTIKYRLDIS  252 (381)
Q Consensus       183 ~~dg~v~i~~~~~~~~~~~d~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~d~~~~~~d~~  252 (381)
                      +.++.|..+.        +|..++.+     +.....      ..+....+++.++|.+.+.......+..++..
T Consensus       168 ~~~~~i~~~~--------~d~~~G~~~~~~~~~~~~~------~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~  228 (297)
T 3g4e_A          168 SLSYSVDAFD--------YDLQTGQISNRRSVYKLEK------EEQIPDGMCIDAEGKLWVACYNGGRVIRLDPV  228 (297)
T ss_dssp             GGGTEEEEEE--------ECTTTCCEEEEEEEEECCG------GGCEEEEEEEBTTSCEEEEEETTTEEEEECTT
T ss_pred             CCCCcEEEEe--------ccCCCCcccCcEEEEECCC------CCCCCCeeEECCCCCEEEEEcCCCEEEEEcCC
Confidence            5567777733        22234432     111110      11122235566788655555555556667764

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=98.43  E-value=2.3e-05  Score=71.60  Aligned_cols=147  Identities=8%  Similarity=-0.061  Sum_probs=92.5

Q ss_pred             eeecCCCceEEEEEecCC--eEEEecCCCccc-eeeEeecc-ccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeE
Q psy4650          39 ITTNKDMIEYKISYQESS--RVKAFNPIQVAT-LILKTLYG-HEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTC  114 (381)
Q Consensus        39 i~~~~~~~~~~~s~~~d~--~v~i~~~~~~~~-~~~~~l~~-h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~  114 (381)
                      +...+++. .++.+..++  .|..|++..... ..+..+.. +...+.+++++|++.  .|..+..++.|..||..++..
T Consensus       176 ia~~~~g~-~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g--~lyv~d~~~~I~~~d~~~~~~  252 (409)
T 3hrp_A          176 PAVTKDKQ-RVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEE--WLYFVDSNKNFGRFNVKTQEV  252 (409)
T ss_dssp             CEECTTSS-EEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSS--EEEEECTTCEEEEEETTTCCE
T ss_pred             eeEecCCC-cEEEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCC--eEEEEECCCcEEEEECCCCCE
Confidence            55565544 555555544  788888753221 11111222 456778899998433  344467789999999987753


Q ss_pred             EEE----eccCCCCE--EEEEEecC-CCEEEEEeCCCCEEEEeCCCCeeeEEEecCC---------------cceEEEEE
Q psy4650         115 VQT----LEGHGQNI--SAVCFHPE-LPIVITGSEDGSVRVWHSGTHRLEISLTYGL---------------ERVWTISS  172 (381)
Q Consensus       115 ~~~----~~~~~~~v--~~~~~~p~-~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~---------------~~v~~v~~  172 (381)
                      ...    ..++...-  ..++|+|+ +.++++-..++.|+.||....  ...+.++.               .....+++
T Consensus       253 ~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~  330 (409)
T 3hrp_A          253 TLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTV  330 (409)
T ss_dssp             EEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEE
T ss_pred             EEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEE
Confidence            322    22222222  39999995 555566666889999998654  22333221               34788999


Q ss_pred             cCCCCEEEEEe-CCCeEEE
Q psy4650         173 LKGSNNVAIGY-DEGSVLL  190 (381)
Q Consensus       173 ~~~~~~l~~~~-~dg~v~i  190 (381)
                      +|+|.++++-+ .++.|+.
T Consensus       331 d~dG~lyvad~~~~~~I~~  349 (409)
T 3hrp_A          331 DEDGNFYIVDGFKGYCLRK  349 (409)
T ss_dssp             CTTCCEEEEETTTTCEEEE
T ss_pred             eCCCCEEEEeCCCCCEEEE
Confidence            99998777776 7788877

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=98.41  E-value=3.3e-05  Score=67.16  Aligned_cols=145  Identities=14%  Similarity=0.104  Sum_probs=99.6

Q ss_pred             cceeeeecCCCceEEEEEec----------CCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeE
Q psy4650          35 TKVDITTNKDMIEYKISYQE----------SSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLV  104 (381)
Q Consensus        35 ~~~~i~~~~~~~~~~~s~~~----------d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v  104 (381)
                      .+.++...+++.-++.+...          .+.+..+++..   . +..+..+......++|+|++.. ++++.+.++.|
T Consensus        99 ~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g---~-~~~~~~~~~~pngi~~spdg~~-lyv~~~~~~~i  173 (297)
T 3g4e_A           99 RFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDH---H-VKKYFDQVDISNGLDWSLDHKI-FYYIDSLSYSV  173 (297)
T ss_dssp             EEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTS---C-EEEEEEEESBEEEEEECTTSCE-EEEEEGGGTEE
T ss_pred             CCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCC---C-EEEEeeccccccceEEcCCCCE-EEEecCCCCcE
Confidence            45677778775544433322          23455555431   1 2223334456789999998863 45677778999


Q ss_pred             EEEEC--CCCeE-----EEEeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEecCCcceEEEEEc-CCC
Q psy4650         105 KIWDY--QNKTC-----VQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSL-KGS  176 (381)
Q Consensus       105 ~vwd~--~~~~~-----~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~-~~~  176 (381)
                      .+|++  .++..     ...+..+.+....+++.++|.+.++...++.|..||..+|+.+..+..+...+++++|. |++
T Consensus       174 ~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~~t~~~f~g~d~  253 (297)
T 3g4e_A          174 DAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVDKTTSCCFGGKNY  253 (297)
T ss_dssp             EEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSSSBEEEEEEESGGG
T ss_pred             EEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCCCceEEEEeCCCC
Confidence            99987  45532     22233344567889999999988888778889999999999988888777789999998 787


Q ss_pred             CEEEEEeC
Q psy4650         177 NNVAIGYD  184 (381)
Q Consensus       177 ~~l~~~~~  184 (381)
                      +.|..++.
T Consensus       254 ~~L~vt~~  261 (297)
T 3g4e_A          254 SEMYVTCA  261 (297)
T ss_dssp             CEEEEEEB
T ss_pred             CEEEEEcC
Confidence            76655543

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=98.40  E-value=1.7e-05  Score=78.38  Aligned_cols=149  Identities=8%  Similarity=-0.087  Sum_probs=96.6

Q ss_pred             eeeecCCCceEEEEEecCC--------------eEEEecCCCccc--eeeEeeccccccEEEEEeeeCCCccEEEEEcCC
Q psy4650          38 DITTNKDMIEYKISYQESS--------------RVKAFNPIQVAT--LILKTLYGHEKGVNCVDYYHGGDKPYLISGADD  101 (381)
Q Consensus        38 ~i~~~~~~~~~~~s~~~d~--------------~v~i~~~~~~~~--~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d  101 (381)
                      .+.+.++ ..++++. .++              .|++|++.+...  ..+....+|...+.++.|+|+|.  +|+..+.+
T Consensus       213 ~~~wspD-~~l~~~~-~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~--~l~~~~~~  288 (741)
T 1yr2_A          213 GLAWLGN-DALLYSR-FAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGR--WVVITSSE  288 (741)
T ss_dssp             CCEESTT-SEEEEEE-CCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSC--EEEEEEEC
T ss_pred             cEEEECC-CEEEEEE-ecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCC--EEEEEEEc
Confidence            5567777 5444444 333              388898854332  23333444555689999999887  56655543


Q ss_pred             -----CeEEEEECCCC--eEEEEeccCCCCEEEEEEecCCCEEEEEeC----CCCEEEEeCCCC--eeeEEEecCCcceE
Q psy4650         102 -----RLVKIWDYQNK--TCVQTLEGHGQNISAVCFHPELPIVITGSE----DGSVRVWHSGTH--RLEISLTYGLERVW  168 (381)
Q Consensus       102 -----~~v~vwd~~~~--~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~----d~~i~vwd~~~~--~~~~~~~~~~~~v~  168 (381)
                           ..|.+||+.++  .+...+..+...+... ++|+|..++..+.    ++.|.+||+.++  .....+..+...+.
T Consensus       289 ~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~  367 (741)
T 1yr2_A          289 GTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLE  367 (741)
T ss_dssp             TTCSCCEEEEEEEETTEECCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEE
T ss_pred             cCCCcceEEEEECCCCCCcccEEecCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEE
Confidence                 48999999877  3134454455454544 3588888777765    345999999874  33444444555566


Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEe
Q psy4650         169 TISSLKGSNNVAIGYDEGSVLLKV  192 (381)
Q Consensus       169 ~v~~~~~~~~l~~~~~dg~v~i~~  192 (381)
                      .+.++ ++.++++...|+..++|.
T Consensus       368 ~~~~~-~~~lv~~~~~dg~~~l~~  390 (741)
T 1yr2_A          368 SVGIA-GNRLFASYIHDAKSQVLA  390 (741)
T ss_dssp             EEEEE-BTEEEEEEEETTEEEEEE
T ss_pred             EEEEE-CCEEEEEEEECCEEEEEE
Confidence            77887 566788888899888865

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.39  E-value=5.1e-05  Score=68.75  Aligned_cols=147  Identities=12%  Similarity=0.036  Sum_probs=102.2

Q ss_pred             CCCceEEEEEecCCeEEEecCCCc--cceeeEeec------c-ccccEEEEEeeeCCCccEEEEEcCC------CeEEEE
Q psy4650          43 KDMIEYKISYQESSRVKAFNPIQV--ATLILKTLY------G-HEKGVNCVDYYHGGDKPYLISGADD------RLVKIW  107 (381)
Q Consensus        43 ~~~~~~~~s~~~d~~v~i~~~~~~--~~~~~~~l~------~-h~~~v~~~~~~~~~~~~~l~s~~~d------~~v~vw  107 (381)
                      .+....++++..+++|.++|....  ...+..++.      . -...-..+...|++   .++++..+      +.+.+.
T Consensus        93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG---i~Vs~~g~~~g~~~g~v~vl  169 (462)
T 2ece_A           93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA---IYISALGNEEGEGPGGILML  169 (462)
T ss_dssp             CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC---EEEEEEEETTSCSCCEEEEE
T ss_pred             ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe---EEEEcCCCcCCCCCCeEEEE
Confidence            455667788899999999998532  224444452      1 11234566777876   45566555      789999


Q ss_pred             ECCCCeEEEEeccCCCC---EEEEEEecCCCEEEEEe-------------------CCCCEEEEeCCCCeeeEEEecCC-
Q psy4650         108 DYQNKTCVQTLEGHGQN---ISAVCFHPELPIVITGS-------------------EDGSVRVWHSGTHRLEISLTYGL-  164 (381)
Q Consensus       108 d~~~~~~~~~~~~~~~~---v~~~~~~p~~~~l~s~~-------------------~d~~i~vwd~~~~~~~~~~~~~~-  164 (381)
                      |..+.+.+..+.....+   ...+.|+|+++.+++..                   .+.+|.+||+.+++.+.++.... 
T Consensus       170 D~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~  249 (462)
T 2ece_A          170 DHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEE  249 (462)
T ss_dssp             CTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTT
T ss_pred             ECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCC
Confidence            99999988888632221   23578899999888875                   26899999999998888887532 


Q ss_pred             -cceEEEEE--cCCCCEEEEEe------CCCeEEEEe
Q psy4650         165 -ERVWTISS--LKGSNNVAIGY------DEGSVLLKV  192 (381)
Q Consensus       165 -~~v~~v~~--~~~~~~l~~~~------~dg~v~i~~  192 (381)
                       .....+.|  +|+++++.+++      .++.+.+|.
T Consensus       250 g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~  286 (462)
T 2ece_A          250 NRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWF  286 (462)
T ss_dssp             EEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEE
T ss_pred             CCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEE
Confidence             34455655  99999877776      456776644

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.37  E-value=2.3e-05  Score=69.78  Aligned_cols=193  Identities=12%  Similarity=0.083  Sum_probs=114.1

Q ss_pred             hcceeeeecCCCceEEEEEec----CCeEEEecCCCccceeeEeecc------ccccEEEEEeeeCCCccEEEEEc---C
Q psy4650          34 ETKVDITTNKDMIEYKISYQE----SSRVKAFNPIQVATLILKTLYG------HEKGVNCVDYYHGGDKPYLISGA---D  100 (381)
Q Consensus        34 ~~~~~i~~~~~~~~~~~s~~~----d~~v~i~~~~~~~~~~~~~l~~------h~~~v~~~~~~~~~~~~~l~s~~---~  100 (381)
                      ..++.+..++++.-|++..+.    +..|.+||+.+  ...+..+..      +...+..++++|++.. .+++.+   .
T Consensus        67 ~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~t--g~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~-~yvtd~~~~~  143 (343)
T 2qe8_A           67 DTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLN--NQLSRVIYLPPPITLSNSFVNDLAVDLIHNF-VYISDPAPDD  143 (343)
T ss_dssp             SCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTT--TEEEEEEECCTTTSCTTCCCCEEEEETTTTE-EEEEECCSGG
T ss_pred             eEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCC--CeEEEEEECChhhcccccccceEEEecCCCE-EEEEcCccCC
Confidence            456778888775544443332    57899999864  233333321      2345688999875442 445655   6


Q ss_pred             CCeEEEEECCCCeEEEEeccCC-----------------------------CCEEEEEEecCCCEEEEEeCCCCEEEEeC
Q psy4650         101 DRLVKIWDYQNKTCVQTLEGHG-----------------------------QNISAVCFHPELPIVITGSEDGSVRVWHS  151 (381)
Q Consensus       101 d~~v~vwd~~~~~~~~~~~~~~-----------------------------~~v~~~~~~p~~~~l~s~~~d~~i~vwd~  151 (381)
                      ++.|.+||..+++..+.+.+|.                             ..+..++|+|+++.|+.+..++. ++|.+
T Consensus       144 ~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~-~l~~~  222 (343)
T 2qe8_A          144 KAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHST-SMYRI  222 (343)
T ss_dssp             GCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCS-EEEEE
T ss_pred             CCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCC-eEEEE
Confidence            8899999998887666554421                             23578999999998887776653 44544


Q ss_pred             CCC-----e-----ee--EEEecCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCceEEEecCCCEEEEEecCceeec
Q psy4650         152 GTH-----R-----LE--ISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKVGREEPAVSMDVNGCKIIWARHSEVQQA  219 (381)
Q Consensus       152 ~~~-----~-----~~--~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  219 (381)
                      ...     .     ..  ....++......++++++|.+.++...++.|.+          ||..++...-.....    
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~----------~d~~~G~~~~~~~~~----  288 (343)
T 2qe8_A          223 KSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGV----------ITSADRAYKLLVTDE----  288 (343)
T ss_dssp             EHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEE----------EETTTTEEEEEEECG----
T ss_pred             EHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEE----------EECCCCCEEEEEECC----
Confidence            211     0     00  011122334556888898888888888888887          666334321111110    


Q ss_pred             ccccCCccccccCCceEEeeehHHHH
Q psy4650         220 NLKTMPEVFENITAGVVLTLSVHVTI  245 (381)
Q Consensus       220 ~~~~~~~~~~~~~dg~~l~~~~~d~~  245 (381)
                       .......+++.++|..+++.....+
T Consensus       289 -~~~~p~~va~~~~g~l~v~~~~~~~  313 (343)
T 2qe8_A          289 -KLSWTDSFNFGSDGYLYFDCNQLHH  313 (343)
T ss_dssp             -GGSCEEEEEECTTSCEEEEECCGGG
T ss_pred             -ceecCCeeEECCCCcEEEEeCcccc
Confidence             0112222566678877766665443

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=98.34  E-value=2.8e-05  Score=67.85  Aligned_cols=196  Identities=9%  Similarity=0.029  Sum_probs=113.5

Q ss_pred             cceeeeecCCCceEEEE-------EecCCeEEEecCCCccceeeEe--eccccccEEEEEeeeC-CCccEEEEEcCCCeE
Q psy4650          35 TKVDITTNKDMIEYKIS-------YQESSRVKAFNPIQVATLILKT--LYGHEKGVNCVDYYHG-GDKPYLISGADDRLV  104 (381)
Q Consensus        35 ~~~~i~~~~~~~~~~~s-------~~~d~~v~i~~~~~~~~~~~~~--l~~h~~~v~~~~~~~~-~~~~~l~s~~~d~~v  104 (381)
                      .+..+...+++ .+.++       +..++.|..|++.......+..  ..++...+.++.++++ +.  ++++.. ...|
T Consensus        19 ~~~~~~~~~~g-~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~--l~v~~~-~~~l   94 (314)
T 1pjx_A           19 GAEGPVFDKNG-DFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQ--LFVADM-RLGL   94 (314)
T ss_dssp             TCEEEEECTTS-CEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSE--EEEEET-TTEE
T ss_pred             CccCceECCCC-CEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCc--EEEEEC-CCCE
Confidence            35566666654 45555       5667899999975422211110  1235677899999987 54  444443 4478


Q ss_pred             EEEECCCCeEEEE-ecc----CCCCEEEEEEecCCCEEEEEeCC---------------CCEEEEeCCCCeeeEEEecCC
Q psy4650         105 KIWDYQNKTCVQT-LEG----HGQNISAVCFHPELPIVITGSED---------------GSVRVWHSGTHRLEISLTYGL  164 (381)
Q Consensus       105 ~vwd~~~~~~~~~-~~~----~~~~v~~~~~~p~~~~l~s~~~d---------------~~i~vwd~~~~~~~~~~~~~~  164 (381)
                      .+||.. ++.... ...    +...+.+++++|+|.++++...+               +.|..||.. ++..... .+.
T Consensus        95 ~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~-~~~  171 (314)
T 1pjx_A           95 LVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVD-TAF  171 (314)
T ss_dssp             EEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEE-EEE
T ss_pred             EEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEec-cCC
Confidence            899988 664433 221    12357899999999877776554               467777765 5443322 233


Q ss_pred             cceEEEEEc----CCCCEEEEE-eCCCeEEEEecCCCceEEEecC-CCEE----EEE-ecCceeecccccCCccccccCC
Q psy4650         165 ERVWTISSL----KGSNNVAIG-YDEGSVLLKVGREEPAVSMDVN-GCKI----IWA-RHSEVQQANLKTMPEVFENITA  233 (381)
Q Consensus       165 ~~v~~v~~~----~~~~~l~~~-~~dg~v~i~~~~~~~~~~~d~~-~~~~----~~~-~~~~~~~~~~~~~~~~~~~~~d  233 (381)
                      .....++++    |+++.+..+ ..++.+.+          ||.. ++..    .+. ....     .......+.+.++
T Consensus       172 ~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~----------~~~~~~g~~~~~~~~~~~~~~-----~~~~p~~i~~d~~  236 (314)
T 1pjx_A          172 QFPNGIAVRHMNDGRPYQLIVAETPTKKLWS----------YDIKGPAKIENKKVWGHIPGT-----HEGGADGMDFDED  236 (314)
T ss_dssp             SSEEEEEEEECTTSCEEEEEEEETTTTEEEE----------EEEEETTEEEEEEEEEECCCC-----SSCEEEEEEEBTT
T ss_pred             CCcceEEEecccCCCCCEEEEEECCCCeEEE----------EECCCCCccccceEEEECCCC-----CCCCCCceEECCC
Confidence            456788999    998655444 45677777          5543 2321    111 1100     0011122456678


Q ss_pred             ceEEeeehHHHHHhccCCC
Q psy4650         234 GVVLTLSVHVTIKYRLDIS  252 (381)
Q Consensus       234 g~~l~~~~~d~~~~~~d~~  252 (381)
                      |.+.+.....+....|+..
T Consensus       237 G~l~v~~~~~~~i~~~d~~  255 (314)
T 1pjx_A          237 NNLLVANWGSSHIEVFGPD  255 (314)
T ss_dssp             CCEEEEEETTTEEEEECTT
T ss_pred             CCEEEEEcCCCEEEEEcCC
Confidence            8766665555566667664

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.32  E-value=6.1e-05  Score=63.27  Aligned_cols=178  Identities=8%  Similarity=0.005  Sum_probs=108.7

Q ss_pred             ceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEEEeccCCCCE
Q psy4650          46 IEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNI  125 (381)
Q Consensus        46 ~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v  125 (381)
                      ..+.++.+.+|.|+.+|+.+.  ..+..+  -..........+.++. +......++.+.++|..+.+.+.++.....+ 
T Consensus        65 ~~Ly~stG~~g~v~~iD~~Tg--kv~~~~--l~~~~FgeGit~~g~~-Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~~eG-  138 (268)
T 3nok_A           65 GHFFESTGHQGTLRQLSLESA--QPVWME--RLGNIFAEGLASDGER-LYQLTWTEGLLFTWSGMPPQRERTTRYSGEG-  138 (268)
T ss_dssp             TEEEEEETTTTEEEECCSSCS--SCSEEE--ECTTCCEEEEEECSSC-EEEEESSSCEEEEEETTTTEEEEEEECSSCC-
T ss_pred             CEEEEEcCCCCEEEEEECCCC--cEEeEE--CCCCcceeEEEEeCCE-EEEEEccCCEEEEEECCcCcEEEEEeCCCce-
Confidence            456677788888999999753  333443  1123333223344553 5556678999999999999999888743322 


Q ss_pred             EEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEecCC-----cceEEEEEcCCCCEEEEEeCCCeEEEEecCCCceEE
Q psy4650         126 SAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGL-----ERVWTISSLKGSNNVAIGYDEGSVLLKVGREEPAVS  200 (381)
Q Consensus       126 ~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~-----~~v~~v~~~~~~~~l~~~~~dg~v~i~~~~~~~~~~  200 (381)
                      ..++  +++..|..+..++.|.++|..+.+.+.++.-..     ..++.+.|. +|...+....++.|.+          
T Consensus       139 wGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~v----------  205 (268)
T 3nok_A          139 WGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLE----------  205 (268)
T ss_dssp             CCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEE----------
T ss_pred             eEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEE----------
Confidence            3333  567777766668899999999998887765321     123445554 4443333334444444          


Q ss_pred             EecCCCEEEEEecCceee-------cccccCCccccccCCceEEeeehH
Q psy4650         201 MDVNGCKIIWARHSEVQQ-------ANLKTMPEVFENITAGVVLTLSVH  242 (381)
Q Consensus       201 ~d~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~dg~~l~~~~~  242 (381)
                      .|+.+++.+-.+......       .........+++.|++..|.+.+.
T Consensus       206 IDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK  254 (268)
T 3nok_A          206 IDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK  254 (268)
T ss_dssp             ECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred             EeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence            999998876555433211       111122333677887776666553

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.31  E-value=0.00016  Score=65.58  Aligned_cols=192  Identities=11%  Similarity=0.037  Sum_probs=121.0

Q ss_pred             hcceeeeecCCCceEEEEEecC------CeEEEecCCCccceeeEeecc--cc-ccEEEEEeeeCCCccEEEEEc-----
Q psy4650          34 ETKVDITTNKDMIEYKISYQES------SRVKAFNPIQVATLILKTLYG--HE-KGVNCVDYYHGGDKPYLISGA-----   99 (381)
Q Consensus        34 ~~~~~i~~~~~~~~~~~s~~~d------~~v~i~~~~~~~~~~~~~l~~--h~-~~v~~~~~~~~~~~~~l~s~~-----   99 (381)
                      ..|..+.+.+++  +.+++..+      |.+.++|..+  ..++.++..  +. ..-..+.|+|+++  .+++..     
T Consensus       138 s~Ph~~~~~pdG--i~Vs~~g~~~g~~~g~v~vlD~~T--~~v~~~~~~~~~~~~~~Yd~~~~p~~~--~mvsS~wg~p~  211 (462)
T 2ece_A          138 SRLHTVHCGPDA--IYISALGNEEGEGPGGILMLDHYS--FEPLGKWEIDRGDQYLAYDFWWNLPNE--VLVSSEWAVPN  211 (462)
T ss_dssp             EEEEEEEECSSC--EEEEEEEETTSCSCCEEEEECTTT--CCEEEECCSBCTTCCCCCCEEEETTTT--EEEECBCCCHH
T ss_pred             CcccceeECCCe--EEEEcCCCcCCCCCCeEEEEECCC--CeEEEEEccCCCCccccceEEECCCCC--EEEEccCcCcc
Confidence            356777888886  55565555      7899999863  345566542  22 2234678899877  677764     


Q ss_pred             --------------CCCeEEEEECCCCeEEEEeccC--CCCEEEEEE--ecCCCEEEEEe------CCCCEEEEeCCCCe
Q psy4650         100 --------------DDRLVKIWDYQNKTCVQTLEGH--GQNISAVCF--HPELPIVITGS------EDGSVRVWHSGTHR  155 (381)
Q Consensus       100 --------------~d~~v~vwd~~~~~~~~~~~~~--~~~v~~~~~--~p~~~~l~s~~------~d~~i~vwd~~~~~  155 (381)
                                    ...+|.+||+.+++.+.++...  ......+.|  +|+++++..++      .+++|.+|....|.
T Consensus       212 ~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~  291 (462)
T 2ece_A          212 TIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGK  291 (462)
T ss_dssp             HHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTE
T ss_pred             ccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCc
Confidence                          4789999999999888777642  123455656  99999766555      56688877665554


Q ss_pred             ee--EEE--ecC----------------CcceEEEEEcCCCCEEEEEeC-CCeEEEEecCCCceEEEecC---CCEEEEE
Q psy4650         156 LE--ISL--TYG----------------LERVWTISSLKGSNNVAIGYD-EGSVLLKVGREEPAVSMDVN---GCKIIWA  211 (381)
Q Consensus       156 ~~--~~~--~~~----------------~~~v~~v~~~~~~~~l~~~~~-dg~v~i~~~~~~~~~~~d~~---~~~~~~~  211 (381)
                      ..  ..+  ...                ......+.++|+|++|.++.. .+.|.+          ||..   +.+++-.
T Consensus       292 ~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~Vav----------fdV~d~~~~~lv~~  361 (462)
T 2ece_A          292 WNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQ----------YDISNPFKPVLTGK  361 (462)
T ss_dssp             EEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEE----------EECSSTTSCEEEEE
T ss_pred             eeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEE----------EEecCCCCcEEEEE
Confidence            21  111  110                134678889999998776654 567766          6653   2344433


Q ss_pred             ecCceee--------cccccCCccccccCCceEEeeeh
Q psy4650         212 RHSEVQQ--------ANLKTMPEVFENITAGVVLTLSV  241 (381)
Q Consensus       212 ~~~~~~~--------~~~~~~~~~~~~~~dg~~l~~~~  241 (381)
                      +......        ..+.+.+..++++|||++|+++.
T Consensus       362 I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          362 VKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             EECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred             EEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence            3222100        11223455688999999999877

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=98.29  E-value=1.9e-05  Score=77.98  Aligned_cols=149  Identities=11%  Similarity=-0.010  Sum_probs=92.7

Q ss_pred             eeeeecCCCceEEEEEecCC----eEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCe---------
Q psy4650          37 VDITTNKDMIEYKISYQESS----RVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRL---------  103 (381)
Q Consensus        37 ~~i~~~~~~~~~~~s~~~d~----~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~---------  103 (381)
                      ..+.+++++..+.++.+.+|    +|++||+.....  +. ...+...+.++.|+|+ .  .|+.++.++.         
T Consensus       166 ~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~--~~-~~~~~~~~~~~~wspD-~--~l~~~~~~~~~~~~~~~~~  239 (741)
T 1yr2_A          166 DAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKP--LA-DELKWVKFSGLAWLGN-D--ALLYSRFAEPKEGQAFQAL  239 (741)
T ss_dssp             EEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCE--EE-EEEEEEESCCCEESTT-S--EEEEEECCCC--------C
T ss_pred             EeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCC--CC-ccCCCceeccEEEECC-C--EEEEEEecCcccccccccC
Confidence            35667787665555555444    599999875332  21 1112222357899998 5  5666655543         


Q ss_pred             -----EEEEECCCCeE--EEEec--cCCCCEEEEEEecCCCEEEEEeCC-----CCEEEEeCCCC--eeeEEEecCCcce
Q psy4650         104 -----VKIWDYQNKTC--VQTLE--GHGQNISAVCFHPELPIVITGSED-----GSVRVWHSGTH--RLEISLTYGLERV  167 (381)
Q Consensus       104 -----v~vwd~~~~~~--~~~~~--~~~~~v~~~~~~p~~~~l~s~~~d-----~~i~vwd~~~~--~~~~~~~~~~~~v  167 (381)
                           |.+|++.++..  ...+.  .+...+..+.|+|+|++++..+.+     ..|.+||+.++  .....+..+...+
T Consensus       240 ~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~  319 (741)
T 1yr2_A          240 NYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQ  319 (741)
T ss_dssp             CCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSC
T ss_pred             CCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCce
Confidence                 88999877641  23333  333468899999999988776644     38999999887  3144555444444


Q ss_pred             EEEEEcCCCCEEEEEeCC----CeEEEEe
Q psy4650         168 WTISSLKGSNNVAIGYDE----GSVLLKV  192 (381)
Q Consensus       168 ~~v~~~~~~~~l~~~~~d----g~v~i~~  192 (381)
                      .... +|+|..++..+.+    +.+.+|+
T Consensus       320 ~~~~-~~dg~~l~~~s~~~~~~~~l~~~d  347 (741)
T 1yr2_A          320 WDFV-DGVGDQLWFVSGDGAPLKKIVRVD  347 (741)
T ss_dssp             EEEE-EEETTEEEEEECTTCTTCEEEEEE
T ss_pred             EEEE-eccCCEEEEEECCCCCCCEEEEEe
Confidence            4443 4888887777653    3365554

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=98.29  E-value=8.1e-05  Score=64.91  Aligned_cols=144  Identities=10%  Similarity=-0.035  Sum_probs=96.0

Q ss_pred             eeeecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEEE
Q psy4650          38 DITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQT  117 (381)
Q Consensus        38 ~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~  117 (381)
                      .....+++..++++...++.+..|++.. .   ...+..+...+.++.+++++.  ++++...++.|..|+.. +.....
T Consensus        49 gp~~~~~g~~l~~~d~~~~~i~~~~~~g-~---~~~~~~~~~~~~gl~~d~dG~--l~v~~~~~~~v~~~~~~-g~~~~~  121 (305)
T 3dr2_A           49 GPAWWEAQRTLVWSDLVGRRVLGWREDG-T---VDVLLDATAFTNGNAVDAQQR--LVHCEHGRRAITRSDAD-GQAHLL  121 (305)
T ss_dssp             EEEEEGGGTEEEEEETTTTEEEEEETTS-C---EEEEEESCSCEEEEEECTTSC--EEEEETTTTEEEEECTT-SCEEEE
T ss_pred             CCeEeCCCCEEEEEECCCCEEEEEeCCC-C---EEEEeCCCCccceeeECCCCC--EEEEECCCCEEEEECCC-CCEEEE
Confidence            4455666555777888889999998732 2   234455667889999999776  66666667889999986 543222


Q ss_pred             ec---cC-CCCEEEEEEecCCCEEEE----EeC-------------CCCEEEEeCCCCeeeEEEecCCcceEEEEEcCCC
Q psy4650         118 LE---GH-GQNISAVCFHPELPIVIT----GSE-------------DGSVRVWHSGTHRLEISLTYGLERVWTISSLKGS  176 (381)
Q Consensus       118 ~~---~~-~~~v~~~~~~p~~~~l~s----~~~-------------d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~  176 (381)
                      ..   +. ...+..++++|+|.++++    |..             .+.|..||..+++.....  .......++|+|++
T Consensus       122 ~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~p~gl~~spdg  199 (305)
T 3dr2_A          122 VGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDHPNGLAFSPDE  199 (305)
T ss_dssp             ECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESSEEEEEECTTS
T ss_pred             EeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCCCcceEEcCCC
Confidence            11   11 124567999999998876    321             245777787666654333  33456789999999


Q ss_pred             CEEEEEeCC------CeEEE
Q psy4650         177 NNVAIGYDE------GSVLL  190 (381)
Q Consensus       177 ~~l~~~~~d------g~v~i  190 (381)
                      +.|..+...      +.+..
T Consensus       200 ~~lyv~~~~~~~~~~~~i~~  219 (305)
T 3dr2_A          200 QTLYVSQTPEQGHGSVEITA  219 (305)
T ss_dssp             SEEEEEECCC---CCCEEEE
T ss_pred             CEEEEEecCCcCCCCCEEEE
Confidence            977776654      45655

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=98.28  E-value=0.00011  Score=66.11  Aligned_cols=123  Identities=11%  Similarity=-0.011  Sum_probs=85.7

Q ss_pred             eEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEc----------CCCeEEEEECCCCeEEEEeccC-----
Q psy4650          57 RVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGA----------DDRLVKIWDYQNKTCVQTLEGH-----  121 (381)
Q Consensus        57 ~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~----------~d~~v~vwd~~~~~~~~~~~~~-----  121 (381)
                      +|.+||+..  ...+..+.....+  .+.++|++.  +++.+.          .++.|.+||..+.+.+..+...     
T Consensus        48 ~v~v~D~~t--~~~~~~i~~g~~p--~i~~spDg~--~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~  121 (373)
T 2mad_H           48 QQWVLDAGS--GSILGHVNGGFLP--NPVAAHSGS--EFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRF  121 (373)
T ss_pred             EEEEEECCC--CeEEEEecCCCCC--CeEECCCCC--EEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCcccc
Confidence            889999864  3455666544444  999999987  454443          4688999999988877766432     


Q ss_pred             --CCCEEEEEEecCCCEEEEEeC--CCCEEEEeCCCCeeeEE-EecCCcceEEEEEcCCC-CEEEEEeCCCeEEE
Q psy4650         122 --GQNISAVCFHPELPIVITGSE--DGSVRVWHSGTHRLEIS-LTYGLERVWTISSLKGS-NNVAIGYDEGSVLL  190 (381)
Q Consensus       122 --~~~v~~~~~~p~~~~l~s~~~--d~~i~vwd~~~~~~~~~-~~~~~~~v~~v~~~~~~-~~l~~~~~dg~v~i  190 (381)
                        ...-..+.|+|+|++++.++.  ++.|.++| .+++.+.. +....    ++.+.|.+ ..+++.+.||.+.+
T Consensus       122 ~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~----~~~~~~~~~~~~~~~~~dg~~~~  191 (373)
T 2mad_H          122 DVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPT----CYHIHPGAPSTFYLLCAQGGLAK  191 (373)
T ss_pred             ccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCc----eEEEEeCCCceEEEEcCCCCEEE
Confidence              123458899999998888764  57899999 99988777 54322    24445554 34556667788777

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.28  E-value=6.5e-08  Score=87.30  Aligned_cols=138  Identities=14%  Similarity=0.068  Sum_probs=72.5

Q ss_pred             EEEEEcCCCeEEEEECCCCeEEEEeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEecCCcc-eEEEEE
Q psy4650          94 YLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLER-VWTISS  172 (381)
Q Consensus        94 ~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~-v~~v~~  172 (381)
                      .+++++.|+.|..||..+|+.+..+..  +++.+..+.+++..+++++.|+.|..||..+|+.+..+..+... +.+...
T Consensus        11 ~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~sp~   88 (369)
T 2hz6_A           11 LLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQASPC   88 (369)
T ss_dssp             EEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTTCSC
T ss_pred             EEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccccCce
Confidence            788999999999999999999888876  45555555667777888889999999999999887766533211 100000


Q ss_pred             cCCCCEEEEEeCCCeEEEEecCCCceEEEecCCCEEEEEecCceeecccccCCccccccCCceEEeeehHHHHHhccCCC
Q psy4650         173 LKGSNNVAIGYDEGSVLLKVGREEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSVHVTIKYRLDIS  252 (381)
Q Consensus       173 ~~~~~~l~~~~~dg~v~i~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~d~~~~~~d~~  252 (381)
                      ...+..+++++.++.+..          ||..+|+.+|.......          ...+|++..++++..++..+.||..
T Consensus        89 ~~~~~~v~~g~~dg~v~a----------~D~~tG~~~w~~~~~~~----------~~~~p~~~~v~~~~~dg~v~a~d~~  148 (369)
T 2hz6_A           89 RSSDGILYMGKKQDIWYV----------IDLLTGEKQQTLSSAFA----------DSLSPSTSLLYLGRTEYTITMYDTK  148 (369)
T ss_dssp             C-----CCCCEEEEEEEE----------ECCC--------------------------------EEEEEEEEEEECCCSS
T ss_pred             EecCCEEEEEeCCCEEEE----------EECCCCcEEEEecCCCc----------ccccccCCEEEEEecCCEEEEEECC
Confidence            012345666777777777          99999999998764321          1223566777777766667777765


Q ss_pred             c
Q psy4650         253 D  253 (381)
Q Consensus       253 ~  253 (381)
                      .
T Consensus       149 t  149 (369)
T 2hz6_A          149 T  149 (369)
T ss_dssp             S
T ss_pred             C
Confidence            4

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=98.26  E-value=1.9e-05  Score=70.82  Aligned_cols=144  Identities=9%  Similarity=0.018  Sum_probs=94.9

Q ss_pred             eeeCCCccEEEEEcC----CCeEEEEECCCCeEEEEeccCCCCEEEEEEecCCCEEEEEe----------CCCCEEEEeC
Q psy4650          86 YYHGGDKPYLISGAD----DRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPIVITGS----------EDGSVRVWHS  151 (381)
Q Consensus        86 ~~~~~~~~~l~s~~~----d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~----------~d~~i~vwd~  151 (381)
                      ..|++.. .+++-..    ++.|.+.|..+++.+..+.....+ . ++++|+|+.++.++          .++.|.+||.
T Consensus        40 ~~pd~~~-vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~  116 (386)
T 3sjl_D           40 PAPDARR-VYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDP  116 (386)
T ss_dssp             CCCCTTE-EEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECT
T ss_pred             cCCCCCE-EEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEEC
Confidence            3566663 3333322    689999999999999988765555 4 99999999776654          3678999999


Q ss_pred             CCCeeeEEEecCC-------cceEEEEEcCCCCEEEEEeC--CCeEEEEecCCCceEEEecCCCEEEEEecCceeeccc-
Q psy4650         152 GTHRLEISLTYGL-------ERVWTISSLKGSNNVAIGYD--EGSVLLKVGREEPAVSMDVNGCKIIWARHSEVQQANL-  221 (381)
Q Consensus       152 ~~~~~~~~~~~~~-------~~v~~v~~~~~~~~l~~~~~--dg~v~i~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~-  221 (381)
                      .+++.+..+....       .....+.++|+|+++.++..  ++.+.+          +|..+++.+-.+....+.... 
T Consensus       117 ~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsV----------ID~~t~~vv~tI~v~g~~~~~P  186 (386)
T 3sjl_D          117 VTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGV----------VDLEGKAFKRMLDVPDCYHIFP  186 (386)
T ss_dssp             TTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEE----------EETTTTEEEEEEECCSEEEEEE
T ss_pred             CCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEE----------EECCCCcEEEEEECCCcceeec
Confidence            9999888875422       24557899999998888763  678888          677766666554322211000 


Q ss_pred             ccCCccccccCCceEEeeehH
Q psy4650         222 KTMPEVFENITAGVVLTLSVH  242 (381)
Q Consensus       222 ~~~~~~~~~~~dg~~l~~~~~  242 (381)
                      .+....+..++||.++.....
T Consensus       187 ~g~~~~~~~~~DG~~~~v~~~  207 (386)
T 3sjl_D          187 TAPDTFFMHCRDGSLAKVAFG  207 (386)
T ss_dssp             EETTEEEEEETTSCEEEEECC
T ss_pred             CCCceeEEECCCCCEEEEECC
Confidence            011111244566666665554

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=98.26  E-value=8.3e-05  Score=65.58  Aligned_cols=145  Identities=10%  Similarity=-0.069  Sum_probs=92.2

Q ss_pred             ceeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEE
Q psy4650          36 KVDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCV  115 (381)
Q Consensus        36 ~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~  115 (381)
                      .-.....++...++++...++.|..|++....   ...+ .+...+.++.|+|++.  ++++. .+ .|.+||..+++..
T Consensus        51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~---~~~~-~~~~~v~~i~~~~dg~--l~v~~-~~-gl~~~d~~~g~~~  122 (326)
T 2ghs_A           51 GEGPTFDPASGTAWWFNILERELHELHLASGR---KTVH-ALPFMGSALAKISDSK--QLIAS-DD-GLFLRDTATGVLT  122 (326)
T ss_dssp             EEEEEEETTTTEEEEEEGGGTEEEEEETTTTE---EEEE-ECSSCEEEEEEEETTE--EEEEE-TT-EEEEEETTTCCEE
T ss_pred             CcCCeEeCCCCEEEEEECCCCEEEEEECCCCc---EEEE-ECCCcceEEEEeCCCe--EEEEE-CC-CEEEEECCCCcEE
Confidence            34455666656677777788899999986422   1222 2346799999999875  45543 33 4899999888753


Q ss_pred             EEecc---C-CCCEEEEEEecCCCEEEEEeC------CCCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEE-eC
Q psy4650         116 QTLEG---H-GQNISAVCFHPELPIVITGSE------DGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIG-YD  184 (381)
Q Consensus       116 ~~~~~---~-~~~v~~~~~~p~~~~l~s~~~------d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~-~~  184 (381)
                      .....   . ...+..+.++|+|.++++...      .+.|..+|  +++... +.........++|+|+++.+..+ +.
T Consensus       123 ~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~-~~~~~~~~~~i~~s~dg~~lyv~~~~  199 (326)
T 2ghs_A          123 LHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTK-LFADISIPNSICFSPDGTTGYFVDTK  199 (326)
T ss_dssp             EEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEE-EEEEESSEEEEEECTTSCEEEEEETT
T ss_pred             EEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEE-eeCCCcccCCeEEcCCCCEEEEEECC
Confidence            32221   1 235789999999997665532      23455555  455433 22233456789999999876554 44


Q ss_pred             CCeEEEE
Q psy4650         185 EGSVLLK  191 (381)
Q Consensus       185 dg~v~i~  191 (381)
                      ++.+.++
T Consensus       200 ~~~I~~~  206 (326)
T 2ghs_A          200 VNRLMRV  206 (326)
T ss_dssp             TCEEEEE
T ss_pred             CCEEEEE
Confidence            6777773

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=98.23  E-value=3.9e-05  Score=69.90  Aligned_cols=139  Identities=12%  Similarity=0.005  Sum_probs=93.2

Q ss_pred             CCCceEEEEEecC----CeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEc---------CCCeEEEEEC
Q psy4650          43 KDMIEYKISYQES----SRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGA---------DDRLVKIWDY  109 (381)
Q Consensus        43 ~~~~~~~~s~~~d----~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~---------~d~~v~vwd~  109 (381)
                      ++...+.++...+    +.|.++|+..  ...+.++.--..+  .+.++|++.. ++++..         .++.|.++|.
T Consensus        82 ~~~~~vyV~n~~~~~~~~~VsVID~~t--~~vv~~I~vG~~P--gia~SpDgk~-lyVan~~~~~~~~G~~~~~VsviD~  156 (426)
T 3c75_H           82 PDARRVYIQDPAHFAAITQQFVIDGST--GRILGMTDGGFLP--HPVAAEDGSF-FAQASTVFERIARGKRTDYVEVFDP  156 (426)
T ss_dssp             CCTTEEEEEECTTTCSSEEEEEEETTT--TEEEEEEEECSSC--EEEECTTSSC-EEEEEEEEEETTEEEEEEEEEEECT
T ss_pred             CCCCEEEEECCCcCCCCCeEEEEECCC--CEEEEEEECCCCC--ceEECCCCCE-EEEEeccccccccCCCCCEEEEEEC
Confidence            3444444444444    7999999874  4556666544445  8999999884 333321         4679999999


Q ss_pred             CCCeEEEEeccC-------CCCEEEEEEecCCCEEEEEeC--CCCEEEEeCCCCeeeEEEecCCcceEEEEEcCCC-CEE
Q psy4650         110 QNKTCVQTLEGH-------GQNISAVCFHPELPIVITGSE--DGSVRVWHSGTHRLEISLTYGLERVWTISSLKGS-NNV  179 (381)
Q Consensus       110 ~~~~~~~~~~~~-------~~~v~~~~~~p~~~~l~s~~~--d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~~l  179 (381)
                      .+++.+..+.-.       ......+.++|+|++++.+..  ++.|.+.|..+++.+..+.....    ....|.+ ..+
T Consensus       157 ~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~----~~~~p~g~~~~  232 (426)
T 3c75_H          157 VTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC----YHIFPASPTVF  232 (426)
T ss_dssp             TTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE----EEEEEEETTEE
T ss_pred             CCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc----eeeccCCCcEE
Confidence            999888776421       123467899999998888764  57899999999999888764321    2223332 445


Q ss_pred             EEEeCCCeEEE
Q psy4650         180 AIGYDEGSVLL  190 (381)
Q Consensus       180 ~~~~~dg~v~i  190 (381)
                      ++.+.||.+.+
T Consensus       233 v~~~~dG~~~~  243 (426)
T 3c75_H          233 YMNCRDGSLAR  243 (426)
T ss_dssp             EEEETTSSEEE
T ss_pred             EEEcCCCCEEE
Confidence            55556666665

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=98.22  E-value=0.00027  Score=62.29  Aligned_cols=143  Identities=6%  Similarity=-0.033  Sum_probs=93.6

Q ss_pred             cceeeeecCCCceEEEEEec-----CCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEEC
Q psy4650          35 TKVDITTNKDMIEYKISYQE-----SSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDY  109 (381)
Q Consensus        35 ~~~~i~~~~~~~~~~~s~~~-----d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~  109 (381)
                      .+.++...+++.-++.+.+.     .+.+..++ .   .. +..+..+......++|+|++.. +.++.+.++.|.+|++
T Consensus       135 ~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~-~---g~-~~~~~~~~~~~~~i~~s~dg~~-lyv~~~~~~~I~~~d~  208 (326)
T 2ghs_A          135 RSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA-K---GK-VTKLFADISIPNSICFSPDGTT-GYFVDTKVNRLMRVPL  208 (326)
T ss_dssp             EEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE-T---TE-EEEEEEEESSEEEEEECTTSCE-EEEEETTTCEEEEEEB
T ss_pred             CCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe-C---Cc-EEEeeCCCcccCCeEEcCCCCE-EEEEECCCCEEEEEEc
Confidence            45677777775534333221     24555555 2   11 2223333456788999998863 3456667889999998


Q ss_pred             C--CC-e-----EEEEeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEecCCcceEEEEEc-CCCCEEE
Q psy4650         110 Q--NK-T-----CVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSL-KGSNNVA  180 (381)
Q Consensus       110 ~--~~-~-----~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~-~~~~~l~  180 (381)
                      .  ++ .     ....+.........+++.++|.++++...++.|.+||. +++.+..+......+.+++|. |++..|.
T Consensus       209 ~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~af~g~d~~~L~  287 (326)
T 2ghs_A          209 DARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDASRLL  287 (326)
T ss_dssp             CTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTTSCEEE
T ss_pred             ccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCCCCcEEEEEecCCCCEEE
Confidence            5  55 2     22233334455688999999988777767788999998 567777777666679999998 8877665


Q ss_pred             EEeC
Q psy4650         181 IGYD  184 (381)
Q Consensus       181 ~~~~  184 (381)
                      +++.
T Consensus       288 vt~~  291 (326)
T 2ghs_A          288 VTSA  291 (326)
T ss_dssp             EEEB
T ss_pred             EEec
Confidence            5543

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.22  E-value=0.0002  Score=60.63  Aligned_cols=197  Identities=5%  Similarity=-0.069  Sum_probs=115.1

Q ss_pred             eeeeecCCCceEEEEEe-cCCeEEEecCCCccceeeEeec-cccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeE
Q psy4650          37 VDITTNKDMIEYKISYQ-ESSRVKAFNPIQVATLILKTLY-GHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTC  114 (381)
Q Consensus        37 ~~i~~~~~~~~~~~s~~-~d~~v~i~~~~~~~~~~~~~l~-~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~  114 (381)
                      .-+...+++.-|+.++. .++.|.++|+..  ...+..+. +.......+.+.  +. .+.++...++.+.++|..+.+.
T Consensus        24 ~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~t--g~v~~~i~l~~~~fgeGi~~~--g~-~lyv~t~~~~~v~viD~~t~~v   98 (266)
T 2iwa_A           24 QGLVYAENDTLFESTGLYGRSSVRQVALQT--GKVENIHKMDDSYFGEGLTLL--NE-KLYQVVWLKNIGFIYDRRTLSN   98 (266)
T ss_dssp             EEEEECSTTEEEEEECSTTTCEEEEEETTT--CCEEEEEECCTTCCEEEEEEE--TT-EEEEEETTCSEEEEEETTTTEE
T ss_pred             ccEEEeCCCeEEEECCCCCCCEEEEEECCC--CCEEEEEecCCCcceEEEEEe--CC-EEEEEEecCCEEEEEECCCCcE
Confidence            44566665433333332 357999999975  34444443 112233345554  44 2556667899999999999998


Q ss_pred             EEEeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEecCC-----cceEEEEEcCCCCEEEEEeCCCeEE
Q psy4650         115 VQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGL-----ERVWTISSLKGSNNVAIGYDEGSVL  189 (381)
Q Consensus       115 ~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~-----~~v~~v~~~~~~~~l~~~~~dg~v~  189 (381)
                      +..+.....  ....++++|..+..+..++.|.++|..+.+....+.-..     ..++.+.|. +|...+....++.|.
T Consensus        99 ~~~i~~g~~--~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~  175 (266)
T 2iwa_A           99 IKNFTHQMK--DGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIA  175 (266)
T ss_dssp             EEEEECCSS--SCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEE
T ss_pred             EEEEECCCC--CeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEE
Confidence            888853211  123456688766666678899999999988877775321     135566666 554444444455555


Q ss_pred             EEecCCCceEEEecCCCEEEEEecCceeec-------ccccCCccccccCCceEEeeehH-HHHHhccCC
Q psy4650         190 LKVGREEPAVSMDVNGCKIIWARHSEVQQA-------NLKTMPEVFENITAGVVLTLSVH-VTIKYRLDI  251 (381)
Q Consensus       190 i~~~~~~~~~~~d~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~dg~~l~~~~~-d~~~~~~d~  251 (381)
                      +          .|+.+++.+-.+.......       .-......++++|++..+.+... -...+..++
T Consensus       176 v----------ID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l  235 (266)
T 2iwa_A          176 R----------ISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKL  235 (266)
T ss_dssp             E----------EETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEE
T ss_pred             E----------EECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEE
Confidence            5          9998888765554321100       00112223677888766665543 333343333

>1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus} SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A*

Probab=98.21  E-value=2.2e-06  Score=81.28  Aligned_cols=75  Identities=28%  Similarity=0.528  Sum_probs=69.5

Q ss_pred             HHhhhhhhhhHhhhccccceeeEeeccccCcceEEeecHHHHHHHHHHHHHHhHHHHHHHHHhCCCCcccccccc
Q psy4650         306 GLLTSFVQPCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIGGLLTSFVQPIEDVLSRSNITHDQINKFT  380 (381)
Q Consensus       306 ~l~~~~~~~~~~~Ls~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~v~  380 (381)
                      ..+...++.+|+.|+....+.++++.+.++.++...++|++||++++++|.+++.+++++|++|++++++|+.|+
T Consensus       261 ~~l~~~aE~~K~~ls~~~~~~i~i~~~~~g~~~~~~ltr~~~e~l~~~~~~~i~~~i~~~L~~a~~~~~~i~~Vv  335 (554)
T 1yuw_A          261 RRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRGTLDPVEKALRDAKLDKSQIHDIV  335 (554)
T ss_dssp             HHHHHHHHHHHHHHTTSSEEEEEETTCSSSCCEEEEEEHHHHHHHTHHHHHHTTHHHHHHHHHTTCCGGGCCEEE
T ss_pred             HHHHHHHHHHhhhcccCceEEEEEeeccCCceEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhCcEEE
Confidence            445678899999999998889999988888889999999999999999999999999999999999999999986

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.21  E-value=0.00017  Score=60.51  Aligned_cols=178  Identities=10%  Similarity=-0.013  Sum_probs=106.1

Q ss_pred             eEEEEEecCC--eEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEEEeccCCCC
Q psy4650          47 EYKISYQESS--RVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQN  124 (381)
Q Consensus        47 ~~~~s~~~d~--~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~  124 (381)
                      .+.++.+.+|  .|+.+|+.+  ...+..+.-. .........+.++. +.+....++.+.++|..+.+.+.++.-... 
T Consensus        54 ~LyestG~~g~S~v~~vD~~T--gkv~~~~~l~-~~~FgeGit~~g~~-ly~ltw~~~~v~v~D~~t~~~~~ti~~~~e-  128 (262)
T 3nol_A           54 YFYESTGLNGRSSIRKVDIES--GKTLQQIELG-KRYFGEGISDWKDK-IVGLTWKNGLGFVWNIRNLRQVRSFNYDGE-  128 (262)
T ss_dssp             EEEEEEEETTEEEEEEECTTT--CCEEEEEECC-TTCCEEEEEEETTE-EEEEESSSSEEEEEETTTCCEEEEEECSSC-
T ss_pred             EEEEECCCCCCceEEEEECCC--CcEEEEEecC-CccceeEEEEeCCE-EEEEEeeCCEEEEEECccCcEEEEEECCCC-
Confidence            4455555555  899999975  3344444322 23333333344553 445556789999999999999988874332 


Q ss_pred             EEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEecCC-----cceEEEEEcCCCCEEEEEeCCCeEEEEecCCCceE
Q psy4650         125 ISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGL-----ERVWTISSLKGSNNVAIGYDEGSVLLKVGREEPAV  199 (381)
Q Consensus       125 v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~-----~~v~~v~~~~~~~~l~~~~~dg~v~i~~~~~~~~~  199 (381)
                        ...+++++..|..+..++.|.++|..+.+.+.++....     ..++.+.|. +|...+....++.|.+         
T Consensus       129 --G~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~v---------  196 (262)
T 3nol_A          129 --GWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQTNKIVR---------  196 (262)
T ss_dssp             --CCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEE---------
T ss_pred             --ceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEccCCeEEE---------
Confidence              23334567766655557789999999988887765421     223345554 4444443334444444         


Q ss_pred             EEecCCCEEEEEecCceeecc------cccCCccccccCCceEEeeehH
Q psy4650         200 SMDVNGCKIIWARHSEVQQAN------LKTMPEVFENITAGVVLTLSVH  242 (381)
Q Consensus       200 ~~d~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~dg~~l~~~~~  242 (381)
                       +|+.+|+.+-.+........      .......++++|++..+.+.+.
T Consensus       197 -IDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK  244 (262)
T 3nol_A          197 -IDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK  244 (262)
T ss_dssp             -ECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred             -EECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence             89998887655543322111      1122333678888777776664

>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, ATP-binding, Ca binding, chaperone, nucleotide-binding, phosphoprotein; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A*

Probab=98.20  E-value=1.3e-06  Score=84.38  Aligned_cols=75  Identities=20%  Similarity=0.365  Sum_probs=69.1

Q ss_pred             HHhhhhhhhhHhhhccccceeeEeeccccCcceEEeecHHHHHHHHHHHHHHhHHHHHHHHHhCCCCcccccccc
Q psy4650         306 GLLTSFVQPCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIGGLLTSFVQPIEDVLSRSNITHDQINKFT  380 (381)
Q Consensus       306 ~l~~~~~~~~~~~Ls~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~v~  380 (381)
                      ..+...++.+|+.|+....+.++++.+.++.++...++|.+|++++++++.+++.+|+++|+++++++++|+.|+
T Consensus       265 ~rL~~~aE~aK~~Ls~~~~~~i~i~~~~~g~~~~~~itr~~fe~l~~~l~~~i~~~i~~~L~~a~l~~~~I~~Vv  339 (675)
T 3d2f_A          265 NRILTAAEKLKKVLSANTNAPFSVESVMNDVDVSSQLSREELEELVKPLLERVTEPVTKALAQAKLSAEEVDFVE  339 (675)
T ss_dssp             HHHHHHHHHHHHHHHHCSEEEEEETTSSSSCCEEEEEEHHHHHHHTHHHHTTTTHHHHHHHHHHTCCGGGCCEEE
T ss_pred             HHHHHHHHHHHHhcCcCCceEEEEeeeccCceEEEEEeHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhCcEEE
Confidence            345678899999999988888999988888889999999999999999999999999999999999999999986

>4gni_A Putative heat shock protein; HSP70-type ATPase, ATP binding protein, magnesium binding, C translational chaperone; HET: ATP; 1.80A {Chaetomium thermophilum var}

Probab=98.15  E-value=4.3e-06  Score=76.42  Aligned_cols=75  Identities=23%  Similarity=0.395  Sum_probs=69.6

Q ss_pred             HHhhhhhhhhHhhhccccceeeEeeccccCcceEEeecHHHHHHHHHHHHHHhHHHHHHHHHhCCCCcccccccc
Q psy4650         306 GLLTSFVQPCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIGGLLTSFVQPIEDVLSRSNITHDQINKFT  380 (381)
Q Consensus       306 ~l~~~~~~~~~~~Ls~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~v~  380 (381)
                      ..+.+.++.+|+.|+....+.+.++.+.++.++...++|.+|++++++++++++.+++++|+++++++.+|+.|+
T Consensus       275 ~~l~~~ae~~K~~ls~~~~~~i~i~~~~~~~~~~~~itr~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~  349 (409)
T 4gni_A          275 AKLRLEAESTKRALSRSTNASFSVESLIDGLDFASTINRLRYETIARTVFEGFNRLVESAVKKAGLDPLDVDEVI  349 (409)
T ss_dssp             HHHHHHHHHHHHHHHHSSEEEEEEEEEETTEEEEEEEEHHHHHHHTHHHHHHHHHHHHHHHHHTTCCGGGCCEEE
T ss_pred             HHHHHHHHHHHHhCCCCCceEEEeecccCCcceEEEeeHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEE
Confidence            345567889999999999999999999999999999999999999999999999999999999999999999986

>4b9q_A Chaperone protein DNAK; HET: ATP; 2.40A {Escherichia coli} PDB: 2kho_A 1dkg_D

Probab=98.14  E-value=4.3e-06  Score=80.12  Aligned_cols=76  Identities=20%  Similarity=0.290  Sum_probs=68.1

Q ss_pred             HHHhhhhhhhhHhhhccccceeeEeeccccC----cceEEeecHHHHHHHHHHHHHHhHHHHHHHHHhCCCCcccccccc
Q psy4650         305 GGLLTSFVQPCMHVLSTLQSSNVFVESLYDG----LDFHHNVSRARFESLIGGLLTSFVQPIEDVLSRSNITHDQINKFT  380 (381)
Q Consensus       305 ~~l~~~~~~~~~~~Ls~~~~~~~~~~~~~~~----~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~v~  380 (381)
                      ...+...++.+|+.|+....+.+.++.+...    .++...++|.+||+++++++.+++.+++++|++|++++.+|++|+
T Consensus       259 ~~~L~~~aE~~K~~Ls~~~~~~i~~~~~~~~~~g~~~~~~~itr~~~e~l~~~~~~~i~~~v~~~L~~a~~~~~~i~~Vv  338 (605)
T 4b9q_A          259 MQRLKEAAEKAKIELSSAQQTDVNLPYITADATGPKHMNIKVTRAKLESLVEDLVNRSIEPLKVALQDAGLSVSDIDDVI  338 (605)
T ss_dssp             HHHHHHHHHHHHHHTTTCSEEEEEEEEEEECSSSEEEEEEEEEHHHHHHHHHHHHHHTTHHHHHHHHHTTCCGGGCSEEE
T ss_pred             HHHHHHHHHHHHHhcCcCCCeEEEEeeeccCCCCCeeEEEEEeHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCcEEE
Confidence            4456788999999999999888888876543    678899999999999999999999999999999999999999986

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.06  E-value=0.00024  Score=69.21  Aligned_cols=146  Identities=12%  Similarity=0.153  Sum_probs=97.6

Q ss_pred             eEEEecCCCccceeeEeec--ccc-------ccEEEEEeeeCCC-ccEEEEEcCCCeEEEEECCCCeEEEEeccCC----
Q psy4650          57 RVKAFNPIQVATLILKTLY--GHE-------KGVNCVDYYHGGD-KPYLISGADDRLVKIWDYQNKTCVQTLEGHG----  122 (381)
Q Consensus        57 ~v~i~~~~~~~~~~~~~l~--~h~-------~~v~~~~~~~~~~-~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~----  122 (381)
                      .+..+|+.+.  ..+..++  .|.       .....+....+|. ...++.++.+|.+.++|..+|+.+..+....    
T Consensus       284 sv~AlD~~TG--~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~  361 (677)
T 1kb0_A          284 SIVALDPDTG--KYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWA  361 (677)
T ss_dssp             EEEEECTTTC--CEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSE
T ss_pred             EEEEEECCCC--CEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcc
Confidence            4888888643  3333332  232       1122223333442 1378899999999999999999877654211    


Q ss_pred             -------CCE------------------------EEEEEecCCCEEEEEeC-----------------------------
Q psy4650         123 -------QNI------------------------SAVCFHPELPIVITGSE-----------------------------  142 (381)
Q Consensus       123 -------~~v------------------------~~~~~~p~~~~l~s~~~-----------------------------  142 (381)
                             .++                        ..++++|+..++.....                             
T Consensus       362 ~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  441 (677)
T 1kb0_A          362 SGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWN  441 (677)
T ss_dssp             EEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCC
T ss_pred             cccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccc
Confidence                   011                        14688998887765432                             


Q ss_pred             --------------CCCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCceEEEecCCCEE
Q psy4650         143 --------------DGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKVGREEPAVSMDVNGCKI  208 (381)
Q Consensus       143 --------------d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~~~~~~~~~~d~~~~~~  208 (381)
                                    .+.|..||+.+|+.++.+... ..+....+...+..++.++.||.+++          ||..+|+.
T Consensus       442 ~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~-~~~~~g~~~~~g~~v~~g~~dg~l~a----------~D~~tG~~  510 (677)
T 1kb0_A          442 TAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHV-SPWNGGTLTTAGNVVFQGTADGRLVA----------YHAATGEK  510 (677)
T ss_dssp             CCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEE----------EETTTCCE
T ss_pred             cccccccccCCCCCccEEEEEeCCCCcEEeecCCC-CCCcCcceEeCCCEEEEECCCCcEEE----------EECCCCce
Confidence                          277999999999999888643 23344445566777888888999988          99999999


Q ss_pred             EEEecCc
Q psy4650         209 IWARHSE  215 (381)
Q Consensus       209 ~~~~~~~  215 (381)
                      +|.....
T Consensus       511 lw~~~~~  517 (677)
T 1kb0_A          511 LWEAPTG  517 (677)
T ss_dssp             EEEEECS
T ss_pred             eeeeeCC
Confidence            9987644

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=98.06  E-value=0.00018  Score=64.63  Aligned_cols=96  Identities=10%  Similarity=-0.065  Sum_probs=73.0

Q ss_pred             eEEEEECCCCeEEEEeccCCCCEEEEEEecCCCEEEEEe----------CCCCEEEEeCCCCeeeEEEecC-------Cc
Q psy4650         103 LVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPIVITGS----------EDGSVRVWHSGTHRLEISLTYG-------LE  165 (381)
Q Consensus       103 ~v~vwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~----------~d~~i~vwd~~~~~~~~~~~~~-------~~  165 (381)
                      +|.++|..+++.+..+.....+  .++++|+|+.++.+.          .++.|.+||..+.+.+..+...       ..
T Consensus        48 ~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~  125 (373)
T 2mad_H           48 QQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGP  125 (373)
T ss_pred             EEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCC
Confidence            8899999999988887754444  999999999888775          3678999999988887766532       12


Q ss_pred             ceEEEEEcCCCCEEEEEeC--CCeEEEEecCCCceEEEecCCCEEEEE
Q psy4650         166 RVWTISSLKGSNNVAIGYD--EGSVLLKVGREEPAVSMDVNGCKIIWA  211 (381)
Q Consensus       166 ~v~~v~~~~~~~~l~~~~~--dg~v~i~~~~~~~~~~~d~~~~~~~~~  211 (381)
                      ....+.++|+|++|.++..  ++.+.+          +| .+++.+..
T Consensus       126 ~p~~~~~spDG~~l~v~n~~~~~~v~v----------iD-~t~~~~~~  162 (373)
T 2mad_H          126 YSWMNANTPNNADLLFFQFAAGPAVGL----------VV-QGGSSDDQ  162 (373)
T ss_pred             CccceEECCCCCEEEEEecCCCCeEEE----------EE-CCCCEEeE
Confidence            3557999999999988874  466777          66 66655444

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=98.05  E-value=0.00028  Score=61.42  Aligned_cols=182  Identities=9%  Similarity=-0.022  Sum_probs=101.6

Q ss_pred             cceeeeecCCCceEEEEEecCCeEEEecCCCccceeeE-eeccc-cccEEEEEeeeCCCccEEEE----EcC--------
Q psy4650          35 TKVDITTNKDMIEYKISYQESSRVKAFNPIQVATLILK-TLYGH-EKGVNCVDYYHGGDKPYLIS----GAD--------  100 (381)
Q Consensus        35 ~~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~-~l~~h-~~~v~~~~~~~~~~~~~l~s----~~~--------  100 (381)
                      .+..+...+++. ++++...++.|..|++.. ....+. ...+. ...+.++.+.|+|.  +.++    |..        
T Consensus        87 ~~~gl~~d~dG~-l~v~~~~~~~v~~~~~~g-~~~~~~~~~~~~~~~~~~~i~~d~dG~--l~~td~~~g~~~~~~~~~~  162 (305)
T 3dr2_A           87 FTNGNAVDAQQR-LVHCEHGRRAITRSDADG-QAHLLVGRYAGKRLNSPNDLIVARDGA--IWFTDPPFGLRKPSQGCPA  162 (305)
T ss_dssp             CEEEEEECTTSC-EEEEETTTTEEEEECTTS-CEEEEECEETTEECSCCCCEEECTTSC--EEEECCSGGGSCGGGSCCC
T ss_pred             ccceeeECCCCC-EEEEECCCCEEEEECCCC-CEEEEEeccCCCccCCCCCEEECCCCC--EEEeCcCCCcccccccccc
Confidence            355666666644 555555567899999752 211111 11121 13467899998876  5665    332        


Q ss_pred             -----CCeEEEEECCCCeEEEEeccCCCCEEEEEEecCCCEEEEEeCC------CCEEEEeCCCCeee--EEE-ecCCcc
Q psy4650         101 -----DRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPIVITGSED------GSVRVWHSGTHRLE--ISL-TYGLER  166 (381)
Q Consensus       101 -----d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d------~~i~vwd~~~~~~~--~~~-~~~~~~  166 (381)
                           .+.|..+|..+++.....  .......++|+|++..|+.+...      +.|.+||+..+...  ..+ ......
T Consensus       163 ~~~~~~~~v~~~d~~~g~~~~~~--~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~  240 (305)
T 3dr2_A          163 DPELAHHSVYRLPPDGSPLQRMA--DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGL  240 (305)
T ss_dssp             CCSSSCEEEEEECSSSCCCEEEE--EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSC
T ss_pred             ccccCCCeEEEEcCCCCcEEEEe--cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCC
Confidence                 256777777666544333  33456889999999977766554      68999998765411  111 112233


Q ss_pred             eEEEEEcCCCCEEEEEeCCCeEEEEecCCCceEEEecCCCEEEEEecCceeecccccCCccccccCCceEEeeehH
Q psy4650         167 VWTISSLKGSNNVAIGYDEGSVLLKVGREEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSVH  242 (381)
Q Consensus       167 v~~v~~~~~~~~l~~~~~dg~v~i~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~  242 (381)
                      ...++++++|++.+ +..+| |.+          |+.. +..+..+....      . ...++|.+++..|++...
T Consensus       241 pdgi~~d~~G~lwv-~~~~g-v~~----------~~~~-g~~~~~~~~~~------~-~~~~~f~~d~~~L~it~~  296 (305)
T 3dr2_A          241 PDGFCVDRGGWLWS-SSGTG-VCV----------FDSD-GQLLGHIPTPG------T-ASNCTFDQAQQRLFITGG  296 (305)
T ss_dssp             CCSEEECTTSCEEE-CCSSE-EEE----------ECTT-SCEEEEEECSS------C-CCEEEECTTSCEEEEEET
T ss_pred             CCeEEECCCCCEEE-ecCCc-EEE----------ECCC-CCEEEEEECCC------c-eeEEEEeCCCCEEEEEcC
Confidence            44577777777333 33333 444          7774 33333322211      1 111455678877776654

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.04  E-value=0.00035  Score=68.16  Aligned_cols=146  Identities=11%  Similarity=0.137  Sum_probs=95.7

Q ss_pred             eEEEecCCCccceeeEeecc--cc-------ccEEEEEeeeCCC-ccEEEEEcCCCeEEEEECCCCeEEEEeccCC-CC-
Q psy4650          57 RVKAFNPIQVATLILKTLYG--HE-------KGVNCVDYYHGGD-KPYLISGADDRLVKIWDYQNKTCVQTLEGHG-QN-  124 (381)
Q Consensus        57 ~v~i~~~~~~~~~~~~~l~~--h~-------~~v~~~~~~~~~~-~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~-~~-  124 (381)
                      .+..+|+.+.  ..+..++.  |.       ..........++. ...++.++.+|.+.++|..+|+.+....... .. 
T Consensus       276 ~v~AlD~~TG--~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~  353 (689)
T 1yiq_A          276 SIVAVNADTG--EYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWT  353 (689)
T ss_dssp             EEEEEETTTC--CEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSE
T ss_pred             eEEEEEccCC--ceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccc
Confidence            3888888743  33343332  32       1222222222332 2368899999999999999998774332110 00 


Q ss_pred             -------------------------------------EEEEEEecCCCEEEEEeC-------------------------
Q psy4650         125 -------------------------------------ISAVCFHPELPIVITGSE-------------------------  142 (381)
Q Consensus       125 -------------------------------------v~~~~~~p~~~~l~s~~~-------------------------  142 (381)
                                                           -..++|+|+..++.....                         
T Consensus       354 ~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g  433 (689)
T 1yiq_A          354 KGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLG  433 (689)
T ss_dssp             EEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCS
T ss_pred             cccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccC
Confidence                                                 012678888776665421                         


Q ss_pred             --------------------CCCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCceEEEe
Q psy4650         143 --------------------DGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKVGREEPAVSMD  202 (381)
Q Consensus       143 --------------------d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~~~~~~~~~~d  202 (381)
                                          +|.|..||+.+|+.++.+..+.. ...-.+...+.+++.++.||.++.          ||
T Consensus       434 ~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~-~~~g~~~tagglvf~gt~dg~l~a----------~D  502 (689)
T 1yiq_A          434 LRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTI-FNGGTLSTAGNLVFEGSADGRVIA----------YA  502 (689)
T ss_dssp             SEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSS-CCCCEEEETTTEEEEECTTSEEEE----------EE
T ss_pred             ccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCCC-ccCccceECCCEEEEECCCCcEEE----------EE
Confidence                                37799999999999998876532 233345556778888999999998          99


Q ss_pred             cCCCEEEEEecCc
Q psy4650         203 VNGCKIIWARHSE  215 (381)
Q Consensus       203 ~~~~~~~~~~~~~  215 (381)
                      ..+|+.+|.....
T Consensus       503 ~~tG~~lw~~~~~  515 (689)
T 1yiq_A          503 ADTGEKLWEQPAA  515 (689)
T ss_dssp             TTTCCEEEEEECS
T ss_pred             CCCCccceeeeCC
Confidence            9999999987644

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.02  E-value=0.0017  Score=53.94  Aligned_cols=179  Identities=10%  Similarity=-0.029  Sum_probs=104.5

Q ss_pred             ceEEEEEecC--CeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEEEeccCCC
Q psy4650          46 IEYKISYQES--SRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQ  123 (381)
Q Consensus        46 ~~~~~s~~~d--~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~  123 (381)
                      ..+..+.+..  +.|+.+|+.+  ...+..+.-. .........+.++. +......++.+.++|..+.+.+.++.....
T Consensus        31 ~~LyestG~~g~S~v~~vD~~t--gkv~~~~~l~-~~~fgeGi~~~~~~-ly~ltw~~~~v~v~D~~tl~~~~ti~~~~~  106 (243)
T 3mbr_X           31 GHLYESTGETGRSSVRKVDLET--GRILQRAEVP-PPYFGAGIVAWRDR-LIQLTWRNHEGFVYDLATLTPRARFRYPGE  106 (243)
T ss_dssp             TEEEEEECCTTSCEEEEEETTT--CCEEEEEECC-TTCCEEEEEEETTE-EEEEESSSSEEEEEETTTTEEEEEEECSSC
T ss_pred             CEEEEECCCCCCceEEEEECCC--CCEEEEEeCC-CCcceeEEEEeCCE-EEEEEeeCCEEEEEECCcCcEEEEEeCCCC
Confidence            3344555554  4899999975  3344443321 12222223334453 555667799999999999999988874332


Q ss_pred             CEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEecCC-----cceEEEEEcCCCCEEEEEeCCCeEEEEecCCCce
Q psy4650         124 NISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGL-----ERVWTISSLKGSNNVAIGYDEGSVLLKVGREEPA  198 (381)
Q Consensus       124 ~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~-----~~v~~v~~~~~~~~l~~~~~dg~v~i~~~~~~~~  198 (381)
                      + ..+  .+++..|..+..++.|.++|..+.+.+.++.-..     ..++.+.|. +|...+....+..|          
T Consensus       107 G-wgl--t~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I----------  172 (243)
T 3mbr_X          107 G-WAL--TSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWLTSRI----------  172 (243)
T ss_dssp             C-CEE--EECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTTTEE----------
T ss_pred             c-eEE--eeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEECCCCeE----------
Confidence            2 344  4567766666568899999999988887775421     233444443 34433333334444          


Q ss_pred             EEEecCCCEEEEEecCceeecc-------cccCCccccccCCceEEeeehH
Q psy4650         199 VSMDVNGCKIIWARHSEVQQAN-------LKTMPEVFENITAGVVLTLSVH  242 (381)
Q Consensus       199 ~~~d~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~dg~~l~~~~~  242 (381)
                      ...|+.+|+.+-.+........       .......+++.|++..+.+.+.
T Consensus       173 ~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK  223 (243)
T 3mbr_X          173 ARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK  223 (243)
T ss_dssp             EEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred             EEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence            4489998887655443322111       1122233677787766666554

>3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex, ATP-binding, chaperone, nucleotide-BIND phosphoprotein, stress response; HET: ADP; 1.30A {Homo sapiens} PDB: 4fsv_A* 1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A* 1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A* 3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* ...

Probab=97.97  E-value=1.4e-05  Score=73.00  Aligned_cols=75  Identities=28%  Similarity=0.526  Sum_probs=69.4

Q ss_pred             HHhhhhhhhhHhhhccccceeeEeeccccCcceEEeecHHHHHHHHHHHHHHhHHHHHHHHHhCCCCcccccccc
Q psy4650         306 GLLTSFVQPCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIGGLLTSFVQPIEDVLSRSNITHDQINKFT  380 (381)
Q Consensus       306 ~l~~~~~~~~~~~Ls~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~v~  380 (381)
                      ..+...++.+|+.|+....+.+.++.+.++.++...++|++|++++++++++++++++++|+++++.+++|+.|+
T Consensus       282 ~~l~~~ae~~K~~ls~~~~~~~~~~~~~~g~~~~~~i~r~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~Vv  356 (404)
T 3i33_A          282 RRLRTACERAKRTLSSSTQASIEIDSLYEGVDFYTSITRARFEELNADLFRGTLEPVEKALRDAKLDKGQIQEIV  356 (404)
T ss_dssp             HHHHHHHHHHHHHTTTSSEEEEEEEEEETTEEEEEEEEHHHHHHHTHHHHHHTHHHHHHHHHHHTCCGGGCCEEE
T ss_pred             HHHHHHHHHHHHhCCcCcceEEEEeeccCCceeEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhhCCEEE
Confidence            345667899999999999999999998888899999999999999999999999999999999999999999886

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=97.96  E-value=0.00045  Score=61.97  Aligned_cols=149  Identities=12%  Similarity=0.131  Sum_probs=91.7

Q ss_pred             EEEEEecCCeEEEecCCCccceeeEeeccc---------cccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEEEe
Q psy4650          48 YKISYQESSRVKAFNPIQVATLILKTLYGH---------EKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTL  118 (381)
Q Consensus        48 ~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h---------~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~  118 (381)
                      .++.++.++.+..||..+.  ..+......         ...+.+.... ++.  .+..++.++.|..+|..+|+.+...
T Consensus        55 ~v~~~~~~g~v~a~d~~tG--~~~W~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~v~v~~~~g~l~a~d~~tG~~~W~~  129 (376)
T 3q7m_A           55 VVYAADRAGLVKALNADDG--KEIWSVSLAEKDGWFSKEPALLSGGVTV-SGG--HVYIGSEKAQVYALNTSDGTVAWQT  129 (376)
T ss_dssp             EEEEECTTSEEEEEETTTC--CEEEEEECCC---CCSCCCCCEEEEEEE-ETT--EEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             EEEEEcCCCeEEEEEccCC--ceeeeecCccccccccccCcccccCceE-eCC--EEEEEcCCCEEEEEECCCCCEEEEE
Confidence            5666777889999998643  233332221         2233332222 223  5778888999999999999988776


Q ss_pred             ccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEecCCcce-----EEEEEcCCCCEEEEEeCCCeEEEEec
Q psy4650         119 EGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERV-----WTISSLKGSNNVAIGYDEGSVLLKVG  193 (381)
Q Consensus       119 ~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v-----~~v~~~~~~~~l~~~~~dg~v~i~~~  193 (381)
                      .............  +..++.++.++.+..+|..+|+.++.........     ......  +..+..++.+|.+..   
T Consensus       130 ~~~~~~~~~p~~~--~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~---  202 (376)
T 3q7m_A          130 KVAGEALSRPVVS--DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGGDNGRVSA---  202 (376)
T ss_dssp             ECSSCCCSCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEECCTTTEEEE---
T ss_pred             eCCCceEcCCEEE--CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEEcCCCEEEE---
Confidence            5443221112222  4477778889999999999999888776432211     111111  234555555555555   


Q ss_pred             CCCceEEEecCCCEEEEEecCc
Q psy4650         194 REEPAVSMDVNGCKIIWARHSE  215 (381)
Q Consensus       194 ~~~~~~~~d~~~~~~~~~~~~~  215 (381)
                             +|..+|..+|.....
T Consensus       203 -------~d~~tG~~~w~~~~~  217 (376)
T 3q7m_A          203 -------VLMEQGQMIWQQRIS  217 (376)
T ss_dssp             -------EETTTCCEEEEEECC
T ss_pred             -------EECCCCcEEEEEecc
Confidence                   999999999987543

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=97.96  E-value=0.00014  Score=66.26  Aligned_cols=128  Identities=10%  Similarity=-0.021  Sum_probs=88.4

Q ss_pred             CeEEEEECCCCeEEEEeccCCCCEEEEEEecCCCEEEEEe----------CCCCEEEEeCCCCeeeEEEecC-------C
Q psy4650         102 RLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPIVITGS----------EDGSVRVWHSGTHRLEISLTYG-------L  164 (381)
Q Consensus       102 ~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~----------~d~~i~vwd~~~~~~~~~~~~~-------~  164 (381)
                      +.|.+.|..+++.+..+..-..+  .+.++|+++.++.+.          .++.|.++|..+++.+..+...       .
T Consensus        99 ~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g  176 (426)
T 3c75_H           99 TQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVG  176 (426)
T ss_dssp             EEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBS
T ss_pred             CeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccC
Confidence            79999999999999988765555  899999999776654          4678999999999988877532       1


Q ss_pred             cceEEEEEcCCCCEEEEEeC--CCeEEEEecCCCceEEEecCCCEEEEEecCceeecc-cccCCccccccCCceEEeeeh
Q psy4650         165 ERVWTISSLKGSNNVAIGYD--EGSVLLKVGREEPAVSMDVNGCKIIWARHSEVQQAN-LKTMPEVFENITAGVVLTLSV  241 (381)
Q Consensus       165 ~~v~~v~~~~~~~~l~~~~~--dg~v~i~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~dg~~l~~~~  241 (381)
                      .....+.++|+|+++.++..  ++.+.+          +|..+++.+..+........ -.+....+.+++||..+++..
T Consensus       177 ~~P~~~~~spDGk~lyV~n~~~~~~VsV----------ID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~~~dG~~~~V~~  246 (426)
T 3c75_H          177 TYQWMNALTPDNKNLLFYQFSPAPAVGV----------VDLEGKTFDRMLDVPDCYHIFPASPTVFYMNCRDGSLARVDF  246 (426)
T ss_dssp             CCGGGSEECTTSSEEEEEECSSSCEEEE----------EETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSSEEEEEC
T ss_pred             CCcceEEEcCCCCEEEEEecCCCCeEEE----------EECCCCeEEEEEEcCCceeeccCCCcEEEEEcCCCCEEEEEC
Confidence            23456899999999888764  567777          78877776655443211000 001111234556776665554

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=97.90  E-value=0.00051  Score=67.03  Aligned_cols=131  Identities=11%  Similarity=0.004  Sum_probs=88.2

Q ss_pred             EEEeeeCCCccEEEEEcCCC-------------------eEEEEECCCCeEEEEecc--CC-------CCEEEEEEecCC
Q psy4650          83 CVDYYHGGDKPYLISGADDR-------------------LVKIWDYQNKTCVQTLEG--HG-------QNISAVCFHPEL  134 (381)
Q Consensus        83 ~~~~~~~~~~~~l~s~~~d~-------------------~v~vwd~~~~~~~~~~~~--~~-------~~v~~~~~~p~~  134 (381)
                      .+.+.|...  .++.+..++                   .|..||..+|+.+..++.  |.       .+........+|
T Consensus       239 ~~~~d~~~~--~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G  316 (689)
T 1yiq_A          239 SFAYDPELN--LLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDG  316 (689)
T ss_dssp             CEEEETTTT--EEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETT
T ss_pred             ceeEcCCCC--EEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCC
Confidence            567777555  677777765                   499999999999887764  21       222223333456


Q ss_pred             C---EEEEEeCCCCEEEEeCCCCeeeEEEecCCc-c--------------------------------------eEEEEE
Q psy4650         135 P---IVITGSEDGSVRVWHSGTHRLEISLTYGLE-R--------------------------------------VWTISS  172 (381)
Q Consensus       135 ~---~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~-~--------------------------------------v~~v~~  172 (381)
                      .   .++.++.+|.+.++|..+|+.+........ .                                      -..+++
T Consensus       317 ~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~  396 (689)
T 1yiq_A          317 KPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSY  396 (689)
T ss_dssp             EEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEE
T ss_pred             cEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceE
Confidence            4   688889999999999999998854432110 0                                      012678


Q ss_pred             cCCCCEEEEEeCCCeEEEEecC-----------------------------------CCceEEEecCCCEEEEEecCc
Q psy4650         173 LKGSNNVAIGYDEGSVLLKVGR-----------------------------------EEPAVSMDVNGCKIIWARHSE  215 (381)
Q Consensus       173 ~~~~~~l~~~~~dg~v~i~~~~-----------------------------------~~~~~~~d~~~~~~~~~~~~~  215 (381)
                      +|+...+.+...+....++...                                   +..+..||..+|+.+|.....
T Consensus       397 dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~  474 (689)
T 1yiq_A          397 NPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYV  474 (689)
T ss_dssp             ETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEES
T ss_pred             CCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCC
Confidence            8888888777665444444221                                   145778999999999997654

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=97.88  E-value=0.0009  Score=59.31  Aligned_cols=202  Identities=9%  Similarity=-0.063  Sum_probs=115.6

Q ss_pred             hcceeeeecCCCceEEEEEe--cCCeEEEecCCCccceeeEe-------eccccccEEEEEeeeCCCccEEEEEcC----
Q psy4650          34 ETKVDITTNKDMIEYKISYQ--ESSRVKAFNPIQVATLILKT-------LYGHEKGVNCVDYYHGGDKPYLISGAD----  100 (381)
Q Consensus        34 ~~~~~i~~~~~~~~~~~s~~--~d~~v~i~~~~~~~~~~~~~-------l~~h~~~v~~~~~~~~~~~~~l~s~~~----  100 (381)
                      ..|..+...+++ .++++..  .++.+++|.+..  .. +..       ..+|...+.++++++++.  ++++-..    
T Consensus        17 ~~p~~va~~~~g-~~~v~~~~~~~~~~~l~~~~~--g~-~~~~p~~~~~~~~~~~~p~gv~~d~~g~--L~v~D~g~~~~   90 (343)
T 2qe8_A           17 LAPGNITLTPDG-RLFLSLHQFYQPEMQVAELTQ--DG-LIPFPPQSGNAIITFDTVLGIKSDGNGI--VWMLDNGNQSK   90 (343)
T ss_dssp             SCEEEEEECTTS-CEEEEECGGGCCSCSEEEEET--TE-EEESCCCCSSCCCCCSCEEEEEECSSSE--EEEEECHHHHT
T ss_pred             CCcceEEECCCC-CEEEEeCCCCCCceEEEEECC--CC-eecCCCcccCcccceeEeeEEEEcCCCc--EEEEcCCCCcC
Confidence            457778877764 4566643  233244454421  11 221       224567899999998764  4444333    


Q ss_pred             -CCeEEEEECCCCeEEEEeccC------CCCEEEEEEecCCCEE-EEEe---CCCCEEEEeCCCCeeeEEEecCC-----
Q psy4650         101 -DRLVKIWDYQNKTCVQTLEGH------GQNISAVCFHPELPIV-ITGS---EDGSVRVWHSGTHRLEISLTYGL-----  164 (381)
Q Consensus       101 -d~~v~vwd~~~~~~~~~~~~~------~~~v~~~~~~p~~~~l-~s~~---~d~~i~vwd~~~~~~~~~~~~~~-----  164 (381)
                       ++.|.+||..+++.+..+..+      ...+..++++|++..+ ++-.   .++.|.+||+.+++....+.+|.     
T Consensus        91 ~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~  170 (343)
T 2qe8_A           91 SVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPE  170 (343)
T ss_dssp             SCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCC
T ss_pred             CCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCccccc
Confidence             678999999999876665432      2346889999865544 4444   57899999998887655543311     


Q ss_pred             ------------------------cceEEEEEcCCCCEEEEEeCCCeEEEEecCCCceEEEecC---CCEEEEE--ecCc
Q psy4650         165 ------------------------ERVWTISSLKGSNNVAIGYDEGSVLLKVGREEPAVSMDVN---GCKIIWA--RHSE  215 (381)
Q Consensus       165 ------------------------~~v~~v~~~~~~~~l~~~~~dg~v~i~~~~~~~~~~~d~~---~~~~~~~--~~~~  215 (381)
                                              ..+..++++|+|+.|..+..++. ++|.        ++..   .+.. ..  ....
T Consensus       171 ~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~-~l~~--------~~~~~~~~~~~-~~~~~~~~  240 (343)
T 2qe8_A          171 DIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHST-SMYR--------IKSADLSNLQL-TDAELGSK  240 (343)
T ss_dssp             SCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCS-EEEE--------EEHHHHTCTTC-CHHHHHTT
T ss_pred             ccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCC-eEEE--------EEHHHhcCCCC-Chhhhhcc
Confidence                                    13567888888877776665543 2211        2210   0000 00  0000


Q ss_pred             eeecccccCCccccccCCceEEeeehHHHHHhccCC
Q psy4650         216 VQQANLKTMPEVFENITAGVVLTLSVHVTIKYRLDI  251 (381)
Q Consensus       216 ~~~~~~~~~~~~~~~~~dg~~l~~~~~d~~~~~~d~  251 (381)
                      .....-.+....+++.++|.+.+.......+..|+.
T Consensus       241 ~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~  276 (343)
T 2qe8_A          241 IERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITS  276 (343)
T ss_dssp             CEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEET
T ss_pred             eEecccCCCCceEEECCCCCEEEEccCCCeEEEEEC
Confidence            000000112333667788888888777777888887

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=97.88  E-value=7.7e-05  Score=73.04  Aligned_cols=112  Identities=16%  Similarity=0.176  Sum_probs=76.4

Q ss_pred             cccccEEEEEeeeCCCccEEE-----EEcCCCeEEEEECCCCeEEEE-eccCCCCEEEEEEecCCCEEEEEeCCCC----
Q psy4650          76 GHEKGVNCVDYYHGGDKPYLI-----SGADDRLVKIWDYQNKTCVQT-LEGHGQNISAVCFHPELPIVITGSEDGS----  145 (381)
Q Consensus        76 ~h~~~v~~~~~~~~~~~~~l~-----s~~~d~~v~vwd~~~~~~~~~-~~~~~~~v~~~~~~p~~~~l~s~~~d~~----  145 (381)
                      +|...+.++.|||+|.  +++     .|+...+|++||+.+++.+.. +.+.  ....++|+ |++.|+.++.+..    
T Consensus       126 ~~~~~l~~~~~SpDg~--~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~--k~~~~~Ws-Dg~~l~y~~~~~~~~~~  200 (693)
T 3iuj_A          126 DGTTALDQLSFSRDGR--ILAYSLSLAGSDWREIHLMDVESKQPLETPLKDV--KFSGISWL-GNEGFFYSSYDKPDGSE  200 (693)
T ss_dssp             TSCCEEEEEEECTTSS--EEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEE--ESCCCEEE-TTTEEEEEESSCCC---
T ss_pred             CCcEEEEEEEECCCCC--EEEEEEecCCCceEEEEEEECCCCCCCccccCCc--eeccEEEe-CCCEEEEEEecCccccc
Confidence            4666788999999988  555     233346899999999985443 2211  12578899 9999988887744    


Q ss_pred             ---------EEEEeCCCCee--eEEE--ec-CCcceEEEEEcCCCCEEEEEeC----CCeEEEEe
Q psy4650         146 ---------VRVWHSGTHRL--EISL--TY-GLERVWTISSLKGSNNVAIGYD----EGSVLLKV  192 (381)
Q Consensus       146 ---------i~vwd~~~~~~--~~~~--~~-~~~~v~~v~~~~~~~~l~~~~~----dg~v~i~~  192 (381)
                               |++|++.++..  ...+  .. +.....++.|+|+|++++....    +..+.+++
T Consensus       201 ~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d  265 (693)
T 3iuj_A          201 LSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKD  265 (693)
T ss_dssp             ----CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEE
T ss_pred             ccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEE
Confidence                     99999987653  2222  22 2335778999999998765543    23666655

>2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus HTA426}

Probab=97.87  E-value=1.7e-05  Score=74.39  Aligned_cols=75  Identities=20%  Similarity=0.319  Sum_probs=65.8

Q ss_pred             HHhhhhhhhhHhhhccccceeeEeecccc----CcceEEeecHHHHHHHHHHHHHHhHHHHHHHHHhCCCCcccccccc
Q psy4650         306 GLLTSFVQPCMHVLSTLQSSNVFVESLYD----GLDFHHNVSRARFESLIGGLLTSFVQPIEDVLSRSNITHDQINKFT  380 (381)
Q Consensus       306 ~l~~~~~~~~~~~Ls~~~~~~~~~~~~~~----~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~v~  380 (381)
                      ..+...++.+|+.|+....+.++++.+.+    ..++...++|++|++++++++.++..+++++|+++++++++|+.|+
T Consensus       229 ~~l~~~aE~~K~~ls~~~~~~i~l~~~~~~~~G~~~~~~~itr~~fe~l~~~~~~~i~~~i~~~L~~a~~~~~~i~~Vv  307 (509)
T 2v7y_A          229 QRLKDAAEKAKKELSGVTQTQISLPFISANENGPLHLEMTLTRAKFEELSAHLVERTMGPVRQALQDAGLTPADIDKVI  307 (509)
T ss_dssp             HHHHHHHHHHHHHTTTCSEEEEEEEEEEEETTEEEEEEEEEEHHHHHHHTHHHHHTTHHHHHHHHHHHTCCGGGCSEEE
T ss_pred             HHHHHHHHHHHHhcCCCCcEEEEEeccccCCCCCeeEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHCcEEE
Confidence            34567788999999998888888887654    2456779999999999999999999999999999999999999986

>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli}

Probab=97.86  E-value=4.9e-06  Score=79.73  Aligned_cols=75  Identities=20%  Similarity=0.309  Sum_probs=66.6

Q ss_pred             HHhhhhhhhhHhhhccccceeeEeeccccC----cceEEeecHHHHHHHHHHHHHHhHHHHHHHHHhCCCCcccccccc
Q psy4650         306 GLLTSFVQPCMHVLSTLQSSNVFVESLYDG----LDFHHNVSRARFESLIGGLLTSFVQPIEDVLSRSNITHDQINKFT  380 (381)
Q Consensus       306 ~l~~~~~~~~~~~Ls~~~~~~~~~~~~~~~----~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~v~  380 (381)
                      ..+...++.+|+.|+....+.++++.+.+.    .++...++|.+|+++++++|.+++.+|+++|++|++++.+|+.|+
T Consensus       260 ~~L~~~aE~~K~~ls~~~~~~i~l~~~~~~~~G~~~~~~~itr~~fe~l~~~~~~~i~~~i~~~L~~a~~~~~~i~~Vv  338 (605)
T 2kho_A          260 QRLKEAAEKAKIELSSAQQTDVNLPYITADATGPKHMNIKVTRAKLESLVEDLVNRSIEPLKVALQDAGLSVSDIDDVI  338 (605)
T ss_dssp             HHHHHHHHHHHHHTTSSSEEEEEEEEEEEETTEEEEEEEEEEHHHHHTTCCSTTGGGTSHHHHHHHTTTCCTTTCSEEE
T ss_pred             HHHHHHHHHHHHHcCCCCceEEEecccccCCCCceEEEEEEeHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhCceEE
Confidence            446677899999999988888888877642    567789999999999999999999999999999999999999986

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=97.84  E-value=0.0091  Score=50.53  Aligned_cols=152  Identities=5%  Similarity=-0.127  Sum_probs=94.1

Q ss_pred             cceeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeE
Q psy4650          35 TKVDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTC  114 (381)
Q Consensus        35 ~~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~  114 (381)
                      .+..+..+++...+.++....+.|..+++....  ....+........+++++|++.. ++++....+.|.+++......
T Consensus        37 ~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~--~~~~~~~~~~~p~~ia~d~~~~~-lyv~d~~~~~I~~~~~~g~~~  113 (267)
T 1npe_A           37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGE--PTTIIRQDLGSPEGIALDHLGRT-IFWTDSQLDRIEVAKMDGTQR  113 (267)
T ss_dssp             EEEEEEEETTTTEEEEEETTTTEEEEEESSSCC--CEEEECTTCCCEEEEEEETTTTE-EEEEETTTTEEEEEETTSCSC
T ss_pred             cEEEEEEecCCCEEEEEECCCCEEEEEecCCCC--cEEEEECCCCCccEEEEEecCCe-EEEEECCCCEEEEEEcCCCCE
Confidence            456777777666666777778899999986422  11222222356789999886552 556667788999999875432


Q ss_pred             EEEeccCCCCEEEEEEecCCCEEEEEeC---CCCEEEEeCCCCeeeEEE-ecCCcceEEEEEcCCCCEEEEE-eCCCeEE
Q psy4650         115 VQTLEGHGQNISAVCFHPELPIVITGSE---DGSVRVWHSGTHRLEISL-TYGLERVWTISSLKGSNNVAIG-YDEGSVL  189 (381)
Q Consensus       115 ~~~~~~~~~~v~~~~~~p~~~~l~s~~~---d~~i~vwd~~~~~~~~~~-~~~~~~v~~v~~~~~~~~l~~~-~~dg~v~  189 (381)
                      .............++++|++..+..+..   .+.|..++..... ...+ ...-.....++++|++..|..+ ...+.|.
T Consensus       114 ~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~-~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~  192 (267)
T 1npe_A          114 RVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN-RRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAE  192 (267)
T ss_dssp             EEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC-CEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEE
T ss_pred             EEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC-cEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEE
Confidence            2222222245689999997665544443   3678888876433 2222 2233457888999876655443 3445565


Q ss_pred             E
Q psy4650         190 L  190 (381)
Q Consensus       190 i  190 (381)
                      .
T Consensus       193 ~  193 (267)
T 1npe_A          193 C  193 (267)
T ss_dssp             E
T ss_pred             E
Confidence            5

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=97.76  E-value=0.0006  Score=57.74  Aligned_cols=164  Identities=10%  Similarity=-0.023  Sum_probs=95.5

Q ss_pred             eeEeeccccc--cEEEEEeeeCCCccEEEEEcC--CCeEEEEECCCCeEEEEeccCC-CCEEEEEEecCCCEEEEEe-CC
Q psy4650          70 ILKTLYGHEK--GVNCVDYYHGGDKPYLISGAD--DRLVKIWDYQNKTCVQTLEGHG-QNISAVCFHPELPIVITGS-ED  143 (381)
Q Consensus        70 ~~~~l~~h~~--~v~~~~~~~~~~~~~l~s~~~--d~~v~vwd~~~~~~~~~~~~~~-~~v~~~~~~p~~~~l~s~~-~d  143 (381)
                      ++.++ .|..  ....+.|++++.  ++++.+.  ++.|++.|..+++.+..+.-.. .....+++  ++..+..+. .+
T Consensus        11 vv~~~-p~~~~~f~~Gl~~~~dg~--Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~--~g~~lyv~t~~~   85 (266)
T 2iwa_A           11 VLNEF-PHDPYAFTQGLVYAENDT--LFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTL--LNEKLYQVVWLK   85 (266)
T ss_dssp             EEEEE-ECCTTCCEEEEEECSTTE--EEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEE--ETTEEEEEETTC
T ss_pred             EEEEE-ECCCCCCcccEEEeCCCe--EEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEE--eCCEEEEEEecC
Confidence            44444 3443  468999998743  5555443  6899999999999888765322 12234444  455555554 48


Q ss_pred             CCEEEEeCCCCeeeEEEecC-CcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCceEEEecCCCEEEEEecCceeecccc
Q psy4650         144 GSVRVWHSGTHRLEISLTYG-LERVWTISSLKGSNNVAIGYDEGSVLLKVGREEPAVSMDVNGCKIIWARHSEVQQANLK  222 (381)
Q Consensus       144 ~~i~vwd~~~~~~~~~~~~~-~~~v~~v~~~~~~~~l~~~~~dg~v~i~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~  222 (381)
                      +.+.++|..+++.+.++... ...   ...+++|..+..+..++.+.+          +|+.+.+.+-.+.-......+.
T Consensus        86 ~~v~viD~~t~~v~~~i~~g~~~g---~glt~Dg~~l~vs~gs~~l~v----------iD~~t~~v~~~I~Vg~~~~p~~  152 (266)
T 2iwa_A           86 NIGFIYDRRTLSNIKNFTHQMKDG---WGLATDGKILYGSDGTSILYE----------IDPHTFKLIKKHNVKYNGHRVI  152 (266)
T ss_dssp             SEEEEEETTTTEEEEEEECCSSSC---CEEEECSSSEEEECSSSEEEE----------ECTTTCCEEEEEECEETTEECC
T ss_pred             CEEEEEECCCCcEEEEEECCCCCe---EEEEECCCEEEEECCCCeEEE----------EECCCCcEEEEEEECCCCcccc
Confidence            89999999999999888644 222   224456666666666777777          8887766554443221100000


Q ss_pred             cCCccccccCCceEEeeehHHHHHhccCCCc
Q psy4650         223 TMPEVFENITAGVVLTLSVHVTIKYRLDISD  253 (381)
Q Consensus       223 ~~~~~~~~~~dg~~l~~~~~d~~~~~~d~~~  253 (381)
                       ....+++. +|...+.......+...|+..
T Consensus       153 -~~nele~~-dg~lyvn~~~~~~V~vID~~t  181 (266)
T 2iwa_A          153 -RLNELEYI-NGEVWANIWQTDCIARISAKD  181 (266)
T ss_dssp             -CEEEEEEE-TTEEEEEETTSSEEEEEETTT
T ss_pred             -cceeEEEE-CCEEEEecCCCCeEEEEECCC
Confidence             01112334 565444444445555666644

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=97.75  E-value=0.00088  Score=62.90  Aligned_cols=88  Identities=10%  Similarity=-0.058  Sum_probs=59.4

Q ss_pred             eEEEEECCC--CeE-EEEeccCCCCEEEEEEecCCCEEEEEe-CCCCEEEEeCCCCe------------eeEEEecCCcc
Q psy4650         103 LVKIWDYQN--KTC-VQTLEGHGQNISAVCFHPELPIVITGS-EDGSVRVWHSGTHR------------LEISLTYGLER  166 (381)
Q Consensus       103 ~v~vwd~~~--~~~-~~~~~~~~~~v~~~~~~p~~~~l~s~~-~d~~i~vwd~~~~~------------~~~~~~~~~~~  166 (381)
                      .|.|.|..+  +.. +..+... ...+++.++|||++++.++ .+.+|.++|+.+.+            ...... -...
T Consensus       255 ~V~VID~~~~~~~~~~~~Ipvg-~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~-vG~g  332 (595)
T 1fwx_A          255 GVKVVDGRKEASSLFTRYIPIA-NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-LGLG  332 (595)
T ss_dssp             TEEEEECSGGGCCSSEEEEEEE-SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB-CCSC
T ss_pred             cEEEEeCcccCCceeEEEEecC-CCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC-CCCC
Confidence            366777766  443 4455432 2348899999999766554 58899999998653            222232 2356


Q ss_pred             eEEEEEcCCCCEEEEEeCCCeEEEEe
Q psy4650         167 VWTISSLKGSNNVAIGYDEGSVLLKV  192 (381)
Q Consensus       167 v~~v~~~~~~~~l~~~~~dg~v~i~~  192 (381)
                      ...++|+|+|....+...|+.+..|+
T Consensus       333 P~h~aF~~dG~aY~t~~ldsqV~kwd  358 (595)
T 1fwx_A          333 PLHTAFDGRGNAYTSLFLDSQVVKWN  358 (595)
T ss_dssp             EEEEEECTTSEEEEEETTTTEEEEEE
T ss_pred             cceEEECCCCeEEEEEecCCcEEEEE
Confidence            78999999995455666788888854

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=97.74  E-value=0.00066  Score=57.00  Aligned_cols=165  Identities=13%  Similarity=0.134  Sum_probs=99.4

Q ss_pred             eeeEeecccc--ccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEEEeccCCCCEEEEEEecCCCEEEEE-eCCCC
Q psy4650          69 LILKTLYGHE--KGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPIVITG-SEDGS  145 (381)
Q Consensus        69 ~~~~~l~~h~--~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~-~~d~~  145 (381)
                      .++.++ .|.  .....+.|+.  . .++.+.+.+|.|+++|+.+++.+..+ -. .........+.+..+... -.++.
T Consensus        44 ~Vv~~~-phd~~~ftqGL~~~~--~-~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~-~~~FgeGit~~g~~Ly~ltw~~~~  117 (268)
T 3nok_A           44 HIIREY-PHATNAFTQGLVFHQ--G-HFFESTGHQGTLRQLSLESAQPVWME-RL-GNIFAEGLASDGERLYQLTWTEGL  117 (268)
T ss_dssp             EEEEEE-ECCTTCCEEEEEEET--T-EEEEEETTTTEEEECCSSCSSCSEEE-EC-TTCCEEEEEECSSCEEEEESSSCE
T ss_pred             EEEEEE-cCCCccccceEEEEC--C-EEEEEcCCCCEEEEEECCCCcEEeEE-CC-CCcceeEEEEeCCEEEEEEccCCE
Confidence            445555 344  3457788862  3 37788899999999999999877776 22 233443334455544444 45889


Q ss_pred             EEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCceEEEecCCCEEEEEecCceeecccccCC
Q psy4650         146 VRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKVGREEPAVSMDVNGCKIIWARHSEVQQANLKTMP  225 (381)
Q Consensus       146 i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~  225 (381)
                      +.+||..+.+.+.++..... -+.++  +++..|..+..++.+.+          +|+.+.+.+-.+.-......+....
T Consensus       118 v~V~D~~Tl~~~~ti~~~~e-GwGLt--~Dg~~L~vSdGs~~l~~----------iDp~T~~v~~~I~V~~~g~~v~~lN  184 (268)
T 3nok_A          118 LFTWSGMPPQRERTTRYSGE-GWGLC--YWNGKLVRSDGGTMLTF----------HEPDGFALVGAVQVKLRGQPVELIN  184 (268)
T ss_dssp             EEEEETTTTEEEEEEECSSC-CCCEE--EETTEEEEECSSSEEEE----------ECTTTCCEEEEEECEETTEECCCEE
T ss_pred             EEEEECCcCcEEEEEeCCCc-eeEEe--cCCCEEEEECCCCEEEE----------EcCCCCeEEEEEEeCCCCccccccc
Confidence            99999999999999876432 23344  45666666666777776          8887777665443322111111111


Q ss_pred             ccccccCCceEEeeehHHHHHhccCCCcC
Q psy4650         226 EVFENITAGVVLTLSVHVTIKYRLDISDS  254 (381)
Q Consensus       226 ~~~~~~~dg~~l~~~~~d~~~~~~d~~~~  254 (381)
                      . +++. +|+..+.......+...|+...
T Consensus       185 e-Le~~-dG~lyanvw~s~~I~vIDp~TG  211 (268)
T 3nok_A          185 E-LECA-NGVIYANIWHSSDVLEIDPATG  211 (268)
T ss_dssp             E-EEEE-TTEEEEEETTCSEEEEECTTTC
T ss_pred             c-cEEe-CCEEEEEECCCCeEEEEeCCCC
Confidence            1 2333 6665555545556666676543

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=97.74  E-value=0.00059  Score=57.25  Aligned_cols=164  Identities=13%  Similarity=0.143  Sum_probs=96.4

Q ss_pred             eeEeeccccc--cEEEEEeeeCCCccEEEEEcCCC--eEEEEECCCCeEEEEeccCCCCEEEEEEecCCCEEEEEeC-CC
Q psy4650          70 ILKTLYGHEK--GVNCVDYYHGGDKPYLISGADDR--LVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPIVITGSE-DG  144 (381)
Q Consensus        70 ~~~~l~~h~~--~v~~~~~~~~~~~~~l~s~~~d~--~v~vwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~-d~  144 (381)
                      ++.++ .|..  ....+.|+ ++  .++.+.+.+|  .|+++|+.+++.+..+.-.. ........+.+..+....+ ++
T Consensus        33 vv~~~-phd~~~ftqGL~~~-~~--~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~g~~ly~ltw~~~  107 (262)
T 3nol_A           33 IVHSY-PHDTKAFTEGFFYR-NG--YFYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISDWKDKIVGLTWKNG  107 (262)
T ss_dssp             EEEEE-ECCTTCEEEEEEEE-TT--EEEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEEETTEEEEEESSSS
T ss_pred             EEEEe-cCCCCcccceEEEE-CC--EEEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEEeCCEEEEEEeeCC
Confidence            44555 4443  35788887 44  3667777766  89999999999888776433 3344444445665555544 88


Q ss_pred             CEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCceEEEecCCCEEEEEecCceeecccccC
Q psy4650         145 SVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKVGREEPAVSMDVNGCKIIWARHSEVQQANLKTM  224 (381)
Q Consensus       145 ~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~  224 (381)
                      .+.+||..+.+.+.++...... +.++  +++..|..+..++.+.+          +|+.+.+.+-.+.-......+...
T Consensus       108 ~v~v~D~~t~~~~~ti~~~~eG-~glt--~dg~~L~~SdGs~~i~~----------iDp~T~~v~~~I~V~~~g~~~~~l  174 (262)
T 3nol_A          108 LGFVWNIRNLRQVRSFNYDGEG-WGLT--HNDQYLIMSDGTPVLRF----------LDPESLTPVRTITVTAHGEELPEL  174 (262)
T ss_dssp             EEEEEETTTCCEEEEEECSSCC-CCEE--ECSSCEEECCSSSEEEE----------ECTTTCSEEEEEECEETTEECCCE
T ss_pred             EEEEEECccCcEEEEEECCCCc-eEEe--cCCCEEEEECCCCeEEE----------EcCCCCeEEEEEEeccCCcccccc
Confidence            9999999999999988764322 2333  45555555555566666          788776655443321100011110


Q ss_pred             CccccccCCceEEeeehHHHHHhccCCCc
Q psy4650         225 PEVFENITAGVVLTLSVHVTIKYRLDISD  253 (381)
Q Consensus       225 ~~~~~~~~dg~~l~~~~~d~~~~~~d~~~  253 (381)
                      . .+++. +|+..+.......+..+|+..
T Consensus       175 N-ELe~~-~G~lyan~w~~~~I~vIDp~t  201 (262)
T 3nol_A          175 N-ELEWV-DGEIFANVWQTNKIVRIDPET  201 (262)
T ss_dssp             E-EEEEE-TTEEEEEETTSSEEEEECTTT
T ss_pred             c-eeEEE-CCEEEEEEccCCeEEEEECCC
Confidence            0 02333 566555554555566666543

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=97.71  E-value=0.00054  Score=60.00  Aligned_cols=144  Identities=10%  Similarity=-0.017  Sum_probs=96.4

Q ss_pred             EEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEEEeccCCCCEEE
Q psy4650          48 YKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISA  127 (381)
Q Consensus        48 ~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~  127 (381)
                      .+..+..++.+..+++.   .........+...+.++...+++.   +..++.++.+..+|.. +..+..+......+.+
T Consensus       109 ~l~v~t~~~~l~~~d~~---g~~~~~~~~~~~~~~~~~~~~~g~---l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~  181 (330)
T 3hxj_A          109 ILYVTSMDGHLYAINTD---GTEKWRFKTKKAIYATPIVSEDGT---IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSA  181 (330)
T ss_dssp             EEEEECTTSEEEEECTT---SCEEEEEECSSCCCSCCEECTTSC---EEEECTTSEEEEECTT-SCEEEEEECSSCCCSC
T ss_pred             EEEEEecCCEEEEEcCC---CCEEEEEcCCCceeeeeEEcCCCE---EEEEcCCCEEEEECCC-CCEeEEEecCCCceee
Confidence            45566778889999985   223334444444555666655544   6677888999999998 7777666655556677


Q ss_pred             EEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCceEEEecCCCE
Q psy4650         128 VCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKVGREEPAVSMDVNGCK  207 (381)
Q Consensus       128 ~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~~~~~~~~~~d~~~~~  207 (381)
                      +...+++..++.+   +.+..+| .+++...........+.++...++|.+ ..++.++.+..          +|. ++.
T Consensus       182 ~~~d~~g~l~v~t---~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l-~v~t~~~gl~~----------~~~-~g~  245 (330)
T 3hxj_A          182 ASIGKDGTIYFGS---DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGTI-YVTSLDGHLYA----------INP-DGT  245 (330)
T ss_dssp             CEECTTCCEEEES---SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSCE-EEEETTTEEEE----------ECT-TSC
T ss_pred             eEEcCCCEEEEEe---CEEEEEC-CCCcEEEEEccCCcceeceEECCCCeE-EEEcCCCeEEE----------ECC-CCC
Confidence            7777777755544   7899999 777777777665566777888877754 44555666655          664 455


Q ss_pred             EEEEecC
Q psy4650         208 IIWARHS  214 (381)
Q Consensus       208 ~~~~~~~  214 (381)
                      .+|....
T Consensus       246 ~~~~~~~  252 (330)
T 3hxj_A          246 EKWRFKT  252 (330)
T ss_dssp             EEEEEEC
T ss_pred             EeEEeeC
Confidence            5676543

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=97.61  E-value=0.0037  Score=61.12  Aligned_cols=150  Identities=17%  Similarity=0.108  Sum_probs=92.9

Q ss_pred             eeeeecCCCceEEEEEecC---CeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcC---CCeEEEEECC
Q psy4650          37 VDITTNKDMIEYKISYQES---SRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGAD---DRLVKIWDYQ  110 (381)
Q Consensus        37 ~~i~~~~~~~~~~~s~~~d---~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~---d~~v~vwd~~  110 (381)
                      ..+...+++..++++.+.+   +.++++++.... .....+..+.+..... |++++.. +++....   .+.|..+++.
T Consensus       237 ~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~-~~~~~l~~~~~~~~~~-~~~~g~~-l~~~t~~~~~~~~l~~~d~~  313 (693)
T 3iuj_A          237 VGATVTEDDRFLLISAANSTSGNRLYVKDLSQEN-APLLTVQGDLDADVSL-VDNKGST-LYLLTNRDAPNRRLVTVDAA  313 (693)
T ss_dssp             EEEEECTTSCEEEEEEESSSSCCEEEEEETTSTT-CCCEEEECSSSSCEEE-EEEETTE-EEEEECTTCTTCEEEEEETT
T ss_pred             EEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCC-CceEEEeCCCCceEEE-EeccCCE-EEEEECCCCCCCEEEEEeCC
Confidence            3455677765555555433   478888875432 2345566666666665 6777764 4444443   3689999998


Q ss_pred             CCeE--EEEeccCCCCEEEEEEecCCCEEEEEeC-CC--CEEEEeCCCCeeeEEEec-CCcceEEEEEcCCCCEEEEEeC
Q psy4650         111 NKTC--VQTLEGHGQNISAVCFHPELPIVITGSE-DG--SVRVWHSGTHRLEISLTY-GLERVWTISSLKGSNNVAIGYD  184 (381)
Q Consensus       111 ~~~~--~~~~~~~~~~v~~~~~~p~~~~l~s~~~-d~--~i~vwd~~~~~~~~~~~~-~~~~v~~v~~~~~~~~l~~~~~  184 (381)
                      ++..  ...+..|...+.  .|+|++..|+.... ++  .|.+||+.++. ...+.. ....+..+.+++++..++....
T Consensus       314 ~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~-~~~l~~p~~~~~~~~~~~~d~~~l~~~~s  390 (693)
T 3iuj_A          314 NPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGKR-VREVALPGLGSVSGFNGKHDDPALYFGFE  390 (693)
T ss_dssp             SCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSCE-EEEECCSSSSEEEECCCCTTCSCEEEEEE
T ss_pred             CCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCCe-eEEeecCCCceEEeeecCCCCCEEEEEec
Confidence            7654  234555655555  89999987766654 44  68899988554 344432 3455677778888776655544


Q ss_pred             C----CeEEEEe
Q psy4650         185 E----GSVLLKV  192 (381)
Q Consensus       185 d----g~v~i~~  192 (381)
                      +    +.+..++
T Consensus       391 s~~tP~~l~~~d  402 (693)
T 3iuj_A          391 NYAQPPTLYRFE  402 (693)
T ss_dssp             CSSSCCEEEEEC
T ss_pred             CCCCCCEEEEEE
Confidence            3    5565544

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=97.58  E-value=0.0025  Score=57.06  Aligned_cols=146  Identities=10%  Similarity=-0.017  Sum_probs=92.7

Q ss_pred             EEEEEecCCeEEEecCCCccceeeEeecccc--c-----c---EEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEEE
Q psy4650          48 YKISYQESSRVKAFNPIQVATLILKTLYGHE--K-----G---VNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQT  117 (381)
Q Consensus        48 ~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~--~-----~---v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~  117 (381)
                      .++.+..++.+..+|+...  ..+.......  +     .   +.+.... .+.  .+..++.++.+..+|..+++.+..
T Consensus       190 ~v~~g~~~g~l~~~d~~tG--~~~w~~~~~~~~~~~~~~~~~~~~~~p~~-~~~--~v~~~~~~g~l~~~d~~tG~~~w~  264 (376)
T 3q7m_A          190 AAVVGGDNGRVSAVLMEQG--QMIWQQRISQATGSTEIDRLSDVDTTPVV-VNG--VVFALAYNGNLTALDLRSGQIMWK  264 (376)
T ss_dssp             EEEECCTTTEEEEEETTTC--CEEEEEECCC-----------CCCCCCEE-ETT--EEEEECTTSCEEEEETTTCCEEEE
T ss_pred             EEEEEcCCCEEEEEECCCC--cEEEEEecccCCCCcccccccccCCCcEE-ECC--EEEEEecCcEEEEEECCCCcEEee
Confidence            4566777888999998642  2333322111  0     0   1111111 122  577788899999999999988776


Q ss_pred             eccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEecC-CcceEEEEEcCCCCEEEEEeCCCeEEEEecCCC
Q psy4650         118 LEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYG-LERVWTISSLKGSNNVAIGYDEGSVLLKVGREE  196 (381)
Q Consensus       118 ~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~-~~~v~~v~~~~~~~~l~~~~~dg~v~i~~~~~~  196 (381)
                      ...  .....+..  ++..+..++.++.+..+|..+|+.+...... .........  .+..+..++.+|.+.+      
T Consensus       265 ~~~--~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~--~~~~l~v~~~~g~l~~------  332 (376)
T 3q7m_A          265 REL--GSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVL--YNGNLVVGDSEGYLHW------  332 (376)
T ss_dssp             ECC--CCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEE--ETTEEEEECTTSEEEE------
T ss_pred             ccC--CCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEE--ECCEEEEEeCCCeEEE------
Confidence            653  22334433  4667777888999999999999988777522 112222222  2456777777887777      


Q ss_pred             ceEEEecCCCEEEEEecC
Q psy4650         197 PAVSMDVNGCKIIWARHS  214 (381)
Q Consensus       197 ~~~~~d~~~~~~~~~~~~  214 (381)
                          +|..+|+.+|....
T Consensus       333 ----~d~~tG~~~~~~~~  346 (376)
T 3q7m_A          333 ----INVEDGRFVAQQKV  346 (376)
T ss_dssp             ----EETTTCCEEEEEEC
T ss_pred             ----EECCCCcEEEEEec
Confidence                99999999998654

>1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1

Probab=97.57  E-value=0.00014  Score=65.67  Aligned_cols=75  Identities=19%  Similarity=0.258  Sum_probs=64.0

Q ss_pred             HHhhhhhhhhHhhhccccceeeEeecccc----CcceEEeecHHHHHHHHHHHHHHhHHHHHHHHHhCCCCcccccccc
Q psy4650         306 GLLTSFVQPCMHVLSTLQSSNVFVESLYD----GLDFHHNVSRARFESLIGGLLTSFVQPIEDVLSRSNITHDQINKFT  380 (381)
Q Consensus       306 ~l~~~~~~~~~~~Ls~~~~~~~~~~~~~~----~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~v~  380 (381)
                      ..+...++.+|+.|+....+.++++.+.+    ..++...++|++|++++++++.++.++++++|+++++.+.+|+.|+
T Consensus       260 ~~l~~~ae~~K~~ls~~~~~~i~i~~~~~~~~G~~~~~~~it~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~Iv  338 (383)
T 1dkg_D          260 QRLKEAAEKAKIELSSAQQTDVNLPYITADATGPKHMNIKVTRAKLESLVEDLVNRSIELLKVALQDAGLSVSDIDDVI  338 (383)
T ss_dssp             HHHHHHHHHHHHHTTSSSEEEEEEEEEEEETTEEEEEEEEEEHHHHHHHSHHHHHHHHHHHHHHHHTTTCCTTTCCEEE
T ss_pred             HHHHHHHHHHHHHhCCCCceEEEEecccccCCCCeeEEEEEeHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhhCCEEE
Confidence            34566788899999988878888876653    2455679999999999999999999999999999999999999886

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=97.54  E-value=0.0047  Score=51.30  Aligned_cols=165  Identities=13%  Similarity=0.096  Sum_probs=95.5

Q ss_pred             eeeEeecccc--ccEEEEEeeeCCCccEEEEEcCC--CeEEEEECCCCeEEEEeccCCCCEEEEEEecCCCEEEEE-eCC
Q psy4650          69 LILKTLYGHE--KGVNCVDYYHGGDKPYLISGADD--RLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPIVITG-SED  143 (381)
Q Consensus        69 ~~~~~l~~h~--~~v~~~~~~~~~~~~~l~s~~~d--~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~-~~d  143 (381)
                      .++.++ .|.  .....+.|+.  . .++.+.+.+  ..|+.+|+.+++.+..+.-.. ........+.+..+... -.+
T Consensus        10 ~v~~~~-phd~~~ftqGL~~~~--~-~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~-~~fgeGi~~~~~~ly~ltw~~   84 (243)
T 3mbr_X           10 RVVKRY-PHDTTAFTEGLFYLR--G-HLYESTGETGRSSVRKVDLETGRILQRAEVPP-PYFGAGIVAWRDRLIQLTWRN   84 (243)
T ss_dssp             EEEEEE-ECCTTCCEEEEEEET--T-EEEEEECCTTSCEEEEEETTTCCEEEEEECCT-TCCEEEEEEETTEEEEEESSS
T ss_pred             EEEEEc-CCCCccccccEEEEC--C-EEEEECCCCCCceEEEEECCCCCEEEEEeCCC-CcceeEEEEeCCEEEEEEeeC
Confidence            345555 454  4567888875  3 266676665  499999999999888776433 22333334445544444 448


Q ss_pred             CCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCceEEEecCCCEEEEEecCceeeccccc
Q psy4650         144 GSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKVGREEPAVSMDVNGCKIIWARHSEVQQANLKT  223 (381)
Q Consensus       144 ~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~  223 (381)
                      +.+.+||..+.+.+.++...... +.++  +++..|..+..++.+.+          +|+.+...+-.+.-......+..
T Consensus        85 ~~v~v~D~~tl~~~~ti~~~~~G-wglt--~dg~~L~vSdgs~~l~~----------iDp~t~~~~~~I~V~~~g~~~~~  151 (243)
T 3mbr_X           85 HEGFVYDLATLTPRARFRYPGEG-WALT--SDDSHLYMSDGTAVIRK----------LDPDTLQQVGSIKVTAGGRPLDN  151 (243)
T ss_dssp             SEEEEEETTTTEEEEEEECSSCC-CEEE--ECSSCEEEECSSSEEEE----------ECTTTCCEEEEEECEETTEECCC
T ss_pred             CEEEEEECCcCcEEEEEeCCCCc-eEEe--eCCCEEEEECCCCeEEE----------EeCCCCeEEEEEEEccCCccccc
Confidence            89999999999999988764322 3343  34555555555666666          88877766544432211111111


Q ss_pred             CCccccccCCceEEeeehHHHHHhccCCCc
Q psy4650         224 MPEVFENITAGVVLTLSVHVTIKYRLDISD  253 (381)
Q Consensus       224 ~~~~~~~~~dg~~l~~~~~d~~~~~~d~~~  253 (381)
                      ... +++. +|+..+-......+...|+..
T Consensus       152 lNe-Le~~-~G~lyanvw~s~~I~vIDp~t  179 (243)
T 3mbr_X          152 LNE-LEWV-NGELLANVWLTSRIARIDPAS  179 (243)
T ss_dssp             EEE-EEEE-TTEEEEEETTTTEEEEECTTT
T ss_pred             cee-eEEe-CCEEEEEECCCCeEEEEECCC
Confidence            100 2222 566555544445556666543

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=97.48  E-value=0.036  Score=46.74  Aligned_cols=164  Identities=6%  Similarity=-0.072  Sum_probs=93.1

Q ss_pred             hcceeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcC--CCeEEEEECCC
Q psy4650          34 ETKVDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGAD--DRLVKIWDYQN  111 (381)
Q Consensus        34 ~~~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~--d~~v~vwd~~~  111 (381)
                      ..|..+...+++..+.++....+.|.++++.......+  ..........++++|++.. ++++...  .+.|..++...
T Consensus        79 ~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~--~~~~~~~P~~i~vd~~~g~-lyv~~~~~~~~~I~~~~~dg  155 (267)
T 1npe_A           79 GSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVL--FDTGLVNPRGIVTDPVRGN-LYWTDWNRDNPKIETSHMDG  155 (267)
T ss_dssp             CCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE--ECSSCSSEEEEEEETTTTE-EEEEECCSSSCEEEEEETTS
T ss_pred             CCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEE--EECCCCCccEEEEeeCCCE-EEEEECCCCCcEEEEEecCC
Confidence            35667777765566666667778899988853222111  2222245688999986552 3344333  46888888764


Q ss_pred             CeEEEEeccCCCCEEEEEEecCCCEEEEE-eCCCCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCCCeEEE
Q psy4650         112 KTCVQTLEGHGQNISAVCFHPELPIVITG-SEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLL  190 (381)
Q Consensus       112 ~~~~~~~~~~~~~v~~~~~~p~~~~l~s~-~~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i  190 (381)
                      ................++++|++..|..+ ...+.|.++|..+......+.. ......++..           ++.+.+
T Consensus       156 ~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~-~~~P~gi~~d-----------~~~lyv  223 (267)
T 1npe_A          156 TNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEG-LQYPFAVTSY-----------GKNLYY  223 (267)
T ss_dssp             CCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEEC-CCSEEEEEEE-----------TTEEEE
T ss_pred             CCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecC-CCCceEEEEe-----------CCEEEE
Confidence            33222222223456899999987765544 4567899999976543333322 1223344433           223333


Q ss_pred             EecCCCceEEEecCCCEEEEEe
Q psy4650         191 KVGREEPAVSMDVNGCKIIWAR  212 (381)
Q Consensus       191 ~~~~~~~~~~~d~~~~~~~~~~  212 (381)
                      .+.....+..+|..+++.+-.+
T Consensus       224 a~~~~~~v~~~d~~~g~~~~~i  245 (267)
T 1npe_A          224 TDWKTNSVIAMDLAISKEMDTF  245 (267)
T ss_dssp             EETTTTEEEEEETTTTEEEEEE
T ss_pred             EECCCCeEEEEeCCCCCceEEE
Confidence            3333334444888888766444

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=97.48  E-value=0.0023  Score=62.26  Aligned_cols=151  Identities=11%  Similarity=0.060  Sum_probs=96.8

Q ss_pred             EEEEEecCCeEEEecCCCccceeeEeeccc-c----ccEEEEEeeeCCCccEEEEEcC------CCeEEEEECCCCeEEE
Q psy4650          48 YKISYQESSRVKAFNPIQVATLILKTLYGH-E----KGVNCVDYYHGGDKPYLISGAD------DRLVKIWDYQNKTCVQ  116 (381)
Q Consensus        48 ~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h-~----~~v~~~~~~~~~~~~~l~s~~~------d~~v~vwd~~~~~~~~  116 (381)
                      .++.++.++.+..+|..+  ...+.....+ .    ..+.+.....+ .  .++.++.      ++.|..+|..+|+.+.
T Consensus       130 ~v~v~~~dg~l~alD~~t--G~~~W~~~~~~~~~~~~~~~~~p~v~~-~--~v~v~~~~~~~~~~g~v~a~D~~tG~~~W  204 (677)
T 1kb0_A          130 KVYVGAWDGRLIALDAAT--GKEVWHQNTFEGQKGSLTITGAPRVFK-G--KVIIGNGGAEYGVRGYITAYDAETGERKW  204 (677)
T ss_dssp             EEEEECTTSEEEEEETTT--CCEEEEEETTTTCCSSCBCCSCCEEET-T--EEEECCBCTTTCCBCEEEEEETTTCCEEE
T ss_pred             EEEEEcCCCEEEEEECCC--CCEEeeecCCcCcCcCcccccCcEEEC-C--EEEEEecccccCCCCEEEEEECCCCcEEE
Confidence            566778889999999864  3344444433 1    12222111112 2  3444432      7999999999999887


Q ss_pred             EeccCCCC--------------------------------EEEEEEecCCCEEEEEeCCC-------------------C
Q psy4650         117 TLEGHGQN--------------------------------ISAVCFHPELPIVITGSEDG-------------------S  145 (381)
Q Consensus       117 ~~~~~~~~--------------------------------v~~~~~~p~~~~l~s~~~d~-------------------~  145 (381)
                      .+......                                ...++++|++..+..+..++                   .
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~s  284 (677)
T 1kb0_A          205 RWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLAS  284 (677)
T ss_dssp             EEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTE
T ss_pred             EeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEE
Confidence            77532111                                13578889888887776553                   4


Q ss_pred             EEEEeCCCCeeeEEEecCCc---------ceEEEEEcCCC---CEEEEEeCCCeEEEEecCCCceEEEecCCCEEEEEec
Q psy4650         146 VRVWHSGTHRLEISLTYGLE---------RVWTISSLKGS---NNVAIGYDEGSVLLKVGREEPAVSMDVNGCKIIWARH  213 (381)
Q Consensus       146 i~vwd~~~~~~~~~~~~~~~---------~v~~v~~~~~~---~~l~~~~~dg~v~i~~~~~~~~~~~d~~~~~~~~~~~  213 (381)
                      |..+|..+|+.++.+.....         ...-+....+|   ..++.++.+|.+.+          +|..+|+++|...
T Consensus       285 v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~----------lD~~tG~~l~~~~  354 (677)
T 1kb0_A          285 IVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFV----------LDRTNGKFISAKN  354 (677)
T ss_dssp             EEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEE----------EETTTCCEEEEEE
T ss_pred             EEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEE----------EECCCCCEecccc
Confidence            99999999999988764221         12222233355   56777777777777          8999999998865

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=97.29  E-value=0.0078  Score=58.47  Aligned_cols=146  Identities=12%  Similarity=0.182  Sum_probs=91.9

Q ss_pred             eEEEecCCCccceeeEeec--ccc-------ccEEEEEeeeCCC-ccEEEEEcCCCeEEEEECCCCeEEEEeccCC----
Q psy4650          57 RVKAFNPIQVATLILKTLY--GHE-------KGVNCVDYYHGGD-KPYLISGADDRLVKIWDYQNKTCVQTLEGHG----  122 (381)
Q Consensus        57 ~v~i~~~~~~~~~~~~~l~--~h~-------~~v~~~~~~~~~~-~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~----  122 (381)
                      .|..+|+.+.  ..+..++  .|.       .+.....+..++. ...++.++.+|.+.++|..+|+.+...+...    
T Consensus       271 ~v~AlD~~tG--~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~  348 (668)
T 1kv9_A          271 SILAIRPDTG--KLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWA  348 (668)
T ss_dssp             EEEEECTTTC--CEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSE
T ss_pred             eEEEEcCCCC--ceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccc
Confidence            3888887643  3333333  232       2222233333443 1268899999999999999998774432211    


Q ss_pred             --------CCE------------------------EEEEEecCCCEEEEE------------------------------
Q psy4650         123 --------QNI------------------------SAVCFHPELPIVITG------------------------------  140 (381)
Q Consensus       123 --------~~v------------------------~~~~~~p~~~~l~s~------------------------------  140 (381)
                              .++                        ..++++|+...+...                              
T Consensus       349 ~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  428 (668)
T 1kv9_A          349 EKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADA  428 (668)
T ss_dssp             EEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGC
T ss_pred             cccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCcccccc
Confidence                    000                        125677766654431                              


Q ss_pred             ------eCCCCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCceEEEecCCCEEEEEecC
Q psy4650         141 ------SEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKVGREEPAVSMDVNGCKIIWARHS  214 (381)
Q Consensus       141 ------~~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~~~~~~~~~~d~~~~~~~~~~~~  214 (381)
                            ..++.|.-||+.+|+.++...... ..........+.+++.++.||.++.          ||..+|+.+|....
T Consensus       429 ~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~-~~~~~~~~t~gg~vf~g~~dg~l~a----------~d~~tG~~l~~~~~  497 (668)
T 1kv9_A          429 TDVPAAVVSGALLAWDPVKQKAAWKVPYPT-HWNGGTLSTAGNLVFQGTAAGQMHA----------YSADKGEALWQFEA  497 (668)
T ss_dssp             CCCCGGGCEEEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEE----------EETTTCCEEEEEEC
T ss_pred             CCCCCCCccceEEEEeCCCCcEEEEccCCC-CCcCceeEeCCCEEEEECCcccchh----------hhhhcChhheEecC
Confidence                  124789999999999988876542 2222333445677888888898888          89999999998765


Q ss_pred             c
Q psy4650         215 E  215 (381)
Q Consensus       215 ~  215 (381)
                      .
T Consensus       498 ~  498 (668)
T 1kv9_A          498 Q  498 (668)
T ss_dssp             S
T ss_pred             C
Confidence            4

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=97.26  E-value=0.0018  Score=57.90  Aligned_cols=95  Identities=12%  Similarity=-0.146  Sum_probs=72.9

Q ss_pred             EEEEEcCCC----eEEEEECCCCeEEEEeccCCCCEEEEEEecCCCEEEEEe----------CCCCEEEEeCCCCeeeEE
Q psy4650          94 YLISGADDR----LVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPIVITGS----------EDGSVRVWHSGTHRLEIS  159 (381)
Q Consensus        94 ~l~s~~~d~----~v~vwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~----------~d~~i~vwd~~~~~~~~~  159 (381)
                      .+++...++    +|.+.|..+++.+..+.....+  .+.++|+++.++.+.          .++.|.+||..+++.+.+
T Consensus        34 ~yV~~~~~~~~~d~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~  111 (368)
T 1mda_H           34 SHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIAD  111 (368)
T ss_dssp             EEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEE
T ss_pred             EEEECCccCCccceEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEE
Confidence            445555455    8889999999999998765556  799999999777765          368899999999999998


Q ss_pred             EecC-------CcceEEEEEcCCCCEEEEEeC--CCeEEE
Q psy4650         160 LTYG-------LERVWTISSLKGSNNVAIGYD--EGSVLL  190 (381)
Q Consensus       160 ~~~~-------~~~v~~v~~~~~~~~l~~~~~--dg~v~i  190 (381)
                      +...       ......+.++|+|+++.++..  +..+.+
T Consensus       112 I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V  151 (368)
T 1mda_H          112 IELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGL  151 (368)
T ss_dssp             EEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEE
T ss_pred             EECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEE
Confidence            8643       123557999999998888764  344555

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=97.25  E-value=0.016  Score=55.14  Aligned_cols=111  Identities=14%  Similarity=0.156  Sum_probs=76.7

Q ss_pred             EEEEEcCCCeEEEEECCCCeEEEEeccCC-------------CCE--------------------------EEEEEecCC
Q psy4650          94 YLISGADDRLVKIWDYQNKTCVQTLEGHG-------------QNI--------------------------SAVCFHPEL  134 (381)
Q Consensus        94 ~l~s~~~d~~v~vwd~~~~~~~~~~~~~~-------------~~v--------------------------~~~~~~p~~  134 (381)
                      .++.++.+|.+.++|..+|+.+..+....             .++                          ..++++|+.
T Consensus       318 ~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~  397 (571)
T 2ad6_A          318 LLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPES  397 (571)
T ss_dssp             EEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTT
T ss_pred             EEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCC
Confidence            56788899999999999998877654211             111                          235778877


Q ss_pred             CEEEEEe-------------------------------------CCCCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCC
Q psy4650         135 PIVITGS-------------------------------------EDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSN  177 (381)
Q Consensus       135 ~~l~s~~-------------------------------------~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~  177 (381)
                      ..+....                                     .++.|..||..+|+.+..+.... .+........+.
T Consensus       398 g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~-~~~~~~~~t~gg  476 (571)
T 2ad6_A          398 RTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKF-AAWGGTLYTKGG  476 (571)
T ss_dssp             TEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESS-CCCSBCEEETTT
T ss_pred             CEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCCC-CccceeEEECCC
Confidence            6555442                                     35789999999999888876432 222222222345


Q ss_pred             EEEEEeCCCeEEEEecCCCceEEEecCCCEEEEEecCc
Q psy4650         178 NVAIGYDEGSVLLKVGREEPAVSMDVNGCKIIWARHSE  215 (381)
Q Consensus       178 ~l~~~~~dg~v~i~~~~~~~~~~~d~~~~~~~~~~~~~  215 (381)
                      .+..++.||.+..          +|..+|+.+|.....
T Consensus       477 ~v~~g~~dg~l~a----------~D~~tG~~lw~~~~~  504 (571)
T 2ad6_A          477 LVWYATLDGYLKA----------LDNKDGKELWNFKMP  504 (571)
T ss_dssp             EEEEECTTSEEEE----------EETTTCCEEEEEECS
T ss_pred             EEEEEcCCCeEEE----------EECCCCCEEEEEeCC
Confidence            6666788888887          999999999997654

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=97.24  E-value=0.0056  Score=53.38  Aligned_cols=142  Identities=11%  Similarity=0.022  Sum_probs=89.2

Q ss_pred             EEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEEEeccCCCCEEEE
Q psy4650          49 KISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAV  128 (381)
Q Consensus        49 ~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~  128 (381)
                      +..+..++.+..|++.   ...+..+......+.++...+++.   +..++  +.+..+| .++.....+......+.++
T Consensus       150 l~vgt~~~~l~~~d~~---g~~~~~~~~~~~~~~~~~~d~~g~---l~v~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~  220 (330)
T 3hxj_A          150 IYVGSNDNYLYAINPD---GTEKWRFKTNDAITSAASIGKDGT---IYFGS--DKVYAIN-PDGTEKWNFYAGYWTVTRP  220 (330)
T ss_dssp             EEEECTTSEEEEECTT---SCEEEEEECSSCCCSCCEECTTCC---EEEES--SSEEEEC-TTSCEEEEECCSSCCCSCC
T ss_pred             EEEEcCCCEEEEECCC---CCEeEEEecCCCceeeeEEcCCCE---EEEEe--CEEEEEC-CCCcEEEEEccCCcceece
Confidence            4556677899999985   223334444445566666655554   44455  7888999 7777777666555667888


Q ss_pred             EEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCceEEEecCCCEE
Q psy4650         129 CFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKVGREEPAVSMDVNGCKI  208 (381)
Q Consensus       129 ~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~~~~~~~~~~d~~~~~~  208 (381)
                      ...+++... .++.++.+..+|. ++.....+......+.++...+++ .+..++.+|.+..          +|. ++..
T Consensus       221 ~~~~~g~l~-v~t~~~gl~~~~~-~g~~~~~~~~~~~~~~~~~~~~~g-~l~v~t~~ggl~~----------~d~-~g~~  286 (330)
T 3hxj_A          221 AISEDGTIY-VTSLDGHLYAINP-DGTEKWRFKTGKRIESSPVIGNTD-TIYFGSYDGHLYA----------INP-DGTE  286 (330)
T ss_dssp             EECTTSCEE-EEETTTEEEEECT-TSCEEEEEECSSCCCSCCEECTTS-CEEEECTTCEEEE----------ECT-TSCE
T ss_pred             EECCCCeEE-EEcCCCeEEEECC-CCCEeEEeeCCCCccccceEcCCC-eEEEecCCCCEEE----------ECC-CCcE
Confidence            888877644 4556777888874 566666665443333444555455 3455666666655          776 5666


Q ss_pred             EEEec
Q psy4650         209 IWARH  213 (381)
Q Consensus       209 ~~~~~  213 (381)
                      +|...
T Consensus       287 ~~~~~  291 (330)
T 3hxj_A          287 KWNFE  291 (330)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            77654

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=97.19  E-value=0.001  Score=59.45  Aligned_cols=103  Identities=9%  Similarity=-0.021  Sum_probs=73.6

Q ss_pred             ceEEEEEecCC----eEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEE---------cCCCeEEEEECCCC
Q psy4650          46 IEYKISYQESS----RVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISG---------ADDRLVKIWDYQNK  112 (381)
Q Consensus        46 ~~~~~s~~~d~----~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~---------~~d~~v~vwd~~~~  112 (381)
                      ....++...++    ++.++|+..  ...+.++..-..+  .+.++|++.. +.++.         ..+++|.+||..++
T Consensus        32 ~~~yV~~~~~~~~~d~vsvID~~t--~~v~~~i~vG~~P--~i~~spDg~~-lyVan~~~~r~~~G~~~~~VsviD~~T~  106 (368)
T 1mda_H           32 RRSHITLPAYFAGTTENWVSCAGC--GVTLGHSLGAFLS--LAVAGHSGSD-FALASTSFARSAKGKRTDYVEVFDPVTF  106 (368)
T ss_dssp             TEEEEEECTTTCSSEEEEEEETTT--TEEEEEEEECTTC--EEEECTTSSC-EEEEEEEETTTTSSSEEEEEEEECTTTC
T ss_pred             CeEEEECCccCCccceEEEEECCC--CeEEEEEeCCCCC--ceEECCCCCE-EEEEcccccccccCCCCCEEEEEECCCC
Confidence            34555555555    788999864  4566676644455  7999999884 23332         24789999999999


Q ss_pred             eEEEEeccC-------CCCEEEEEEecCCCEEEEEeC--CCCEEE--EeCCC
Q psy4650         113 TCVQTLEGH-------GQNISAVCFHPELPIVITGSE--DGSVRV--WHSGT  153 (381)
Q Consensus       113 ~~~~~~~~~-------~~~v~~~~~~p~~~~l~s~~~--d~~i~v--wd~~~  153 (381)
                      +.+..+..+       ......++++|+|++++.+..  +..+.+  +|..+
T Consensus       107 ~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t  158 (368)
T 1mda_H          107 LPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD  158 (368)
T ss_dssp             CEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE
T ss_pred             CEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh
Confidence            998888643       123478999999998888764  456888  99876

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=97.12  E-value=0.011  Score=55.48  Aligned_cols=194  Identities=12%  Similarity=0.048  Sum_probs=115.4

Q ss_pred             CCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEe-e-eCCCccEEEEE------------------cCCCe
Q psy4650          44 DMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDY-Y-HGGDKPYLISG------------------ADDRL  103 (381)
Q Consensus        44 ~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~-~-~~~~~~~l~s~------------------~~d~~  103 (381)
                      ++....++...++.|-+.|+.......+..+.. ......+++ + |++.  ++..+                  ..++.
T Consensus       100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~-g~~phg~~~~~~p~~~--~v~~~~~~~~p~~~dg~~l~~~~~~~~~  176 (595)
T 1fwx_A          100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPN-AKGIHGLRPQKWPRSN--YVFCNGEDETPLVNDGTNMEDVANYVNV  176 (595)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEEECSS-CCSEEEEEECCSSBCS--EEEEEECSCEESSCSSSSTTCGGGEEEE
T ss_pred             CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCC-CCCCcceeeeecCCCc--EEEEecccccccCCCCcccccccccCce
Confidence            434444566667789999987532222224432 235778887 4 7776  55555                  33568


Q ss_pred             EEEEECCCCeEEEEeccCCCCEEEEEEecCCCEEEEEeCCC--------------------------------------C
Q psy4650         104 VKIWDYQNKTCVQTLEGHGQNISAVCFHPELPIVITGSEDG--------------------------------------S  145 (381)
Q Consensus       104 v~vwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~--------------------------------------~  145 (381)
                      +.+.|..+.+....+.-.. .-..++++|+|+++++.+.+.                                      .
T Consensus       177 vtvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~  255 (595)
T 1fwx_A          177 FTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNG  255 (595)
T ss_dssp             EEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETT
T ss_pred             EEEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECc
Confidence            9999999998888776433 336677899999887776442                                      4


Q ss_pred             EEEEeCCC--Cee-eEEEecCCcceEEEEEcCCCCEEEEEe-CCCeEEEEecCCCceEEEecCCCEEEE----EecC-ce
Q psy4650         146 VRVWHSGT--HRL-EISLTYGLERVWTISSLKGSNNVAIGY-DEGSVLLKVGREEPAVSMDVNGCKIIW----ARHS-EV  216 (381)
Q Consensus       146 i~vwd~~~--~~~-~~~~~~~~~~v~~v~~~~~~~~l~~~~-~dg~v~i~~~~~~~~~~~d~~~~~~~~----~~~~-~~  216 (381)
                      |.+.|..+  +.. +..+... ....++.++|+|+++.+++ .++.+.+          +|..+.....    .... -.
T Consensus       256 V~VID~~~~~~~~~~~~Ipvg-~~PhGv~~sPDGk~v~V~~~~s~~VsV----------id~~~~~~~~~~~l~~~~~v~  324 (595)
T 1fwx_A          256 VKVVDGRKEASSLFTRYIPIA-NNPHGCNMAPDKKHLCVAGKLSPTVTV----------LDVTRFDAVFYENADPRSAVV  324 (595)
T ss_dssp             EEEEECSGGGCCSSEEEEEEE-SSCCCEEECTTSSEEEEECTTSSBEEE----------EEGGGHHHHHHSCCCGGGGEE
T ss_pred             EEEEeCcccCCceeEEEEecC-CCceEEEEcCCCCEEEEeCCCCCeEEE----------EECcccccccccccCcccceE
Confidence            77777776  444 3444322 2445789999999776655 5677777          6664321000    0000 00


Q ss_pred             eecccccCCccccccCCceEEeeehHHHHHhccCCC
Q psy4650         217 QQANLKTMPEVFENITAGVVLTLSVHVTIKYRLDIS  252 (381)
Q Consensus       217 ~~~~~~~~~~~~~~~~dg~~l~~~~~d~~~~~~d~~  252 (381)
                      ....+...+..++|++||....+..-+.....|++.
T Consensus       325 ~~v~vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~  360 (595)
T 1fwx_A          325 AEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIE  360 (595)
T ss_dssp             ECCBCCSCEEEEEECTTSEEEEEETTTTEEEEEEHH
T ss_pred             EEcCCCCCcceEEECCCCeEEEEEecCCcEEEEEhh
Confidence            112223334446889999544455566666667653

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=97.10  E-value=0.063  Score=51.13  Aligned_cols=62  Identities=19%  Similarity=0.261  Sum_probs=44.0

Q ss_pred             CCCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCceEEEecCCCEEEEEecCc
Q psy4650         143 DGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKVGREEPAVSMDVNGCKIIWARHSE  215 (381)
Q Consensus       143 d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~~~~~~~~~~d~~~~~~~~~~~~~  215 (381)
                      ++.|.-||+.+|+.+........ +..-.....+.++..++.||.++.          ||..+|+.+|.....
T Consensus       465 ~G~l~A~D~~tG~~~W~~~~~~~-~~~g~~~tagglvf~g~~dg~l~A----------~D~~tG~~lW~~~~~  526 (582)
T 1flg_A          465 VGSLRAMDPVSGKVVWEHKEHLP-LWAGVLATAGNLVFTGTGDGYFKA----------FDAKSGKELWKFQTG  526 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEESSC-CCSCCEEETTTEEEEECTTSEEEE----------EETTTCCEEEEEECS
T ss_pred             cceEEEEECCCCCEEEEecCCCC-CcccceEeCCCEEEEECCCCcEEE----------EECCCCCEEEEecCC
Confidence            57899999999998887764321 111111123556777888888887          999999999997654

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=96.97  E-value=0.018  Score=55.88  Aligned_cols=150  Identities=13%  Similarity=0.106  Sum_probs=91.7

Q ss_pred             EEEEEecCCeEEEecCCCccceeeEeecccc----ccEEEEEeeeCCCccEEEEEcC------CCeEEEEECCCCeEEEE
Q psy4650          48 YKISYQESSRVKAFNPIQVATLILKTLYGHE----KGVNCVDYYHGGDKPYLISGAD------DRLVKIWDYQNKTCVQT  117 (381)
Q Consensus        48 ~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~----~~v~~~~~~~~~~~~~l~s~~~------d~~v~vwd~~~~~~~~~  117 (381)
                      .++.++.++.+..+|..+.  ..+.......    ..+.+.....+ .  .++.+..      ++.|..+|..+|+.+..
T Consensus       119 ~v~v~~~dg~l~alD~~tG--~~~W~~~~~~~~~~~~~~~~P~v~~-~--~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~  193 (668)
T 1kv9_A          119 KVYVGTLDGRLIALDAKTG--KAIWSQQTTDPAKPYSITGAPRVVK-G--KVIIGNGGAEYGVRGFVSAYDADTGKLAWR  193 (668)
T ss_dssp             EEEEECTTSEEEEEETTTC--CEEEEEECSCTTSSCBCCSCCEEET-T--EEEECCBCTTTCCBCEEEEEETTTCCEEEE
T ss_pred             EEEEEcCCCEEEEEECCCC--CEeeeeccCCCCCcceecCCCEEEC-C--EEEEeCCCCCcCCCCEEEEEECCCCcEEEE
Confidence            4666778899999998643  3333332210    11111111112 2  3444432      68999999999998887


Q ss_pred             eccC---CC----------------------------CEEEEEEecCCCEEEEEeCCC-------------------CEE
Q psy4650         118 LEGH---GQ----------------------------NISAVCFHPELPIVITGSEDG-------------------SVR  147 (381)
Q Consensus       118 ~~~~---~~----------------------------~v~~~~~~p~~~~l~s~~~d~-------------------~i~  147 (381)
                      +...   ..                            ....+++.|+...+..+..++                   .|.
T Consensus       194 ~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~  273 (668)
T 1kv9_A          194 FYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSIL  273 (668)
T ss_dssp             EESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEE
T ss_pred             ecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEE
Confidence            7421   00                            012468888888887776665                   399


Q ss_pred             EEeCCCCeeeEEEecCC---------cceEEEEEcCCCC---EEEEEeCCCeEEEEecCCCceEEEecCCCEEEEEe
Q psy4650         148 VWHSGTHRLEISLTYGL---------ERVWTISSLKGSN---NVAIGYDEGSVLLKVGREEPAVSMDVNGCKIIWAR  212 (381)
Q Consensus       148 vwd~~~~~~~~~~~~~~---------~~v~~v~~~~~~~---~l~~~~~dg~v~i~~~~~~~~~~~d~~~~~~~~~~  212 (381)
                      -+|..+|+.++.+....         ..........+|+   .++.++.+|.+.+          +|..+|+++|..
T Consensus       274 AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~----------lD~~tG~~l~~~  340 (668)
T 1kv9_A          274 AIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYV----------LDRTNGKLISAE  340 (668)
T ss_dssp             EECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEE----------EETTTCCEEEEE
T ss_pred             EEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEE----------EECCCCCEeccc
Confidence            99999999998886521         1222222223554   5777788888888          777777777543

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=96.97  E-value=0.031  Score=48.53  Aligned_cols=165  Identities=9%  Similarity=0.005  Sum_probs=103.7

Q ss_pred             ccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEE-Eecc----CC--CCEEEEEE---ecCCCEEEEEe---
Q psy4650          75 YGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQ-TLEG----HG--QNISAVCF---HPELPIVITGS---  141 (381)
Q Consensus        75 ~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~-~~~~----~~--~~v~~~~~---~p~~~~l~s~~---  141 (381)
                      .+..-.-.+++|++... .++++.-..++|..|+...+.... .+.+    ..  ..+..+.|   .|+++++++..   
T Consensus         9 ~~~~~yPE~~~wd~~~g-~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~   87 (334)
T 2p9w_A            9 KVKNLTPEDTIYDRTRQ-VFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAK   87 (334)
T ss_dssp             CCTTCCCSCEEEETTTT-EEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETT
T ss_pred             cCcccCCcCccCcCCCC-EEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccc
Confidence            33444556788877544 255565689999999997654332 3332    11  13578999   68877766543   


Q ss_pred             ----------CCCCEEEEeCC---CCeeeEEEec-------------CCcceEEEEEcCCCCEEEEEeCC-CeEEEEecC
Q psy4650         142 ----------EDGSVRVWHSG---THRLEISLTY-------------GLERVWTISSLKGSNNVAIGYDE-GSVLLKVGR  194 (381)
Q Consensus       142 ----------~d~~i~vwd~~---~~~~~~~~~~-------------~~~~v~~v~~~~~~~~l~~~~~d-g~v~i~~~~  194 (381)
                                .+..|..+|+.   +++.+.....             .......++..++|+..++++.- +.|..    
T Consensus        88 af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~r----  163 (334)
T 2p9w_A           88 SFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIAR----  163 (334)
T ss_dssp             TTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEE----
T ss_pred             cccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEE----
Confidence                      26779999999   7877765542             11347899999999988888776 66655    


Q ss_pred             CCceEEEecCCC-EEEEEecCceeecccccCCccccccCCceEEeeehHHHHHhccCCC
Q psy4650         195 EEPAVSMDVNGC-KIIWARHSEVQQANLKTMPEVFENITAGVVLTLSVHVTIKYRLDIS  252 (381)
Q Consensus       195 ~~~~~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~d~~~~~~d~~  252 (381)
                            +++++. ...|...... .....+.. .+++.|||..|......++.+.+|+.
T Consensus       164 ------V~pdG~~~~~~~~~~~~-~~~~~G~n-GIv~~pdg~~Liv~~~~g~L~~fD~~  214 (334)
T 2p9w_A          164 ------VSADGKTVSTFAWESGN-GGQRPGYS-GITFDPHSNKLIAFGGPRALTAFDVS  214 (334)
T ss_dssp             ------ECTTSCCEEEEEECCCC-SSSCCSCS-EEEEETTTTEEEEESSSSSEEEEECS
T ss_pred             ------EeCCCCEEeeeeecCCC-cccccCcc-eEEEeCCCCEEEEEcCCCeEEEEcCC
Confidence                  566543 2334433221 11122222 25778999888877666666767765

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=96.93  E-value=0.067  Score=48.84  Aligned_cols=151  Identities=15%  Similarity=0.119  Sum_probs=85.7

Q ss_pred             cceeeeecC-CCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCC----eEEEEEC
Q psy4650          35 TKVDITTNK-DMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDR----LVKIWDY  109 (381)
Q Consensus        35 ~~~~i~~~~-~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~----~v~vwd~  109 (381)
                      .|..+..++ +... |+.+...+.|+.+++..   ..+..+.........++|++++.. ++++....+    .+.+.+.
T Consensus       138 ~P~~lavdp~~~g~-Lyv~d~~~~I~~id~~~---~~v~~~~~~~~~P~~ia~d~~G~~-lyvad~~~~~~~~~v~~~~~  212 (430)
T 3tc9_A          138 GAVWLSFDPKNHNH-LYLVGEQHPTRLIDFEK---EYVSTVYSGLSKVRTICWTHEADS-MIITNDQNNNDRPNNYILTR  212 (430)
T ss_dssp             CCCEEEEETTEEEE-EEEEEBTEEEEEEETTT---TEEEEEECCCSCEEEEEECTTSSE-EEEEECCSCTTSEEEEEEEG
T ss_pred             CCCEEEECCCCCCe-EEEEeCCCcEEEEECCC---CEEEEEecCCCCcceEEEeCCCCE-EEEEeCCCCcccceEEEEeC
Confidence            456666665 2333 33333337888898853   223333334556889999987762 334433222    2333343


Q ss_pred             CCCeE-EEEeccCCCCEEEEEEec-CCCEEEEEeCCCCEEEEeCCCCeeeEEEec-CCcceEEEEEcCCCCEE-EEEeCC
Q psy4650         110 QNKTC-VQTLEGHGQNISAVCFHP-ELPIVITGSEDGSVRVWHSGTHRLEISLTY-GLERVWTISSLKGSNNV-AIGYDE  185 (381)
Q Consensus       110 ~~~~~-~~~~~~~~~~v~~~~~~p-~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~-~~~~v~~v~~~~~~~~l-~~~~~d  185 (381)
                      ..... ...+.. ......++++| ++.++++-..++.|..+|..++........ .......++++|+|+++ ++-..+
T Consensus       213 ~g~~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~  291 (430)
T 3tc9_A          213 ESGFKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQ  291 (430)
T ss_dssp             GGTSCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTT
T ss_pred             CCceeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCC
Confidence            22111 122221 12347788999 666666666678999999987765222221 22457789999999954 444456


Q ss_pred             CeEEEE
Q psy4650         186 GSVLLK  191 (381)
Q Consensus       186 g~v~i~  191 (381)
                      +.|..+
T Consensus       292 ~~I~~~  297 (430)
T 3tc9_A          292 HYILRS  297 (430)
T ss_dssp             TEEEEE
T ss_pred             CEEEEE
Confidence            667663

>1jce_A ROD shape-determining protein MREB; MBL, actin, HSP-70, FTSZ, structural protein; 2.10A {Thermotoga maritima} SCOP: c.55.1.1 c.55.1.1 PDB: 1jcf_A 1jcg_A* 2wus_A

Probab=96.89  E-value=0.00037  Score=61.88  Aligned_cols=95  Identities=9%  Similarity=0.067  Sum_probs=72.5

Q ss_pred             HHHHhhhhhhccccce------eeEEEe--cccCCcccccccChHHHHHHHHHHhhhhhhhhHhhhccccceeeEeecc-
Q psy4650         262 RAAAETCMHVLSTLQS------SNVFVE--SLYDGLDFHHNVSRARFESLIGGLLTSFVQPCMHVLSTLQSSNVFVESL-  332 (381)
Q Consensus       262 ~~~~e~ak~~lS~~~~------~~i~~~--~l~~g~~~~~~itr~~fe~l~~~l~~~~~~~~~~~Ls~~~~~~~~~~~~-  332 (381)
                      ...+|++|+.++....      ..+.++  .+.+|.++..+++|++|++++.+++.++.+.++++|..... .+..+.+ 
T Consensus       200 ~~~ae~~K~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~i~~~i~~~l~~~~~-~~~~~~~~  278 (344)
T 1jce_A          200 ERTAERVKIEIGNVFPSKENDELETTVSGIDLSTGLPRKLTLKGGEVREALRSVVVAIVESVRTTLEKTPP-ELVSDIIE  278 (344)
T ss_dssp             HHHHHHHHHHHCBCSCCHHHHHCEEEEEEEETTTTEEEEEEEEHHHHHHHTHHHHHHHHHHHHHHHHTSCH-HHHHHHHH
T ss_pred             HHHHHHHHHHHhccCccccCCcceEEEeccccCCCCceeEEEeHHHHHHHHHHHHHHHHHHHHHHHHhCCc-hhccchhh
Confidence            3567889999887542      244443  45678778889999999999999999999999999987421 0111223 


Q ss_pred             ccCcceEEeecHHHHHHHHHHHHHH
Q psy4650         333 YDGLDFHHNVSRARFESLIGGLLTS  357 (381)
Q Consensus       333 ~~~~~~~~~~~~~~~e~~~~~~~~~  357 (381)
                      ...+++||+.+.|.|++++++.|+.
T Consensus       279 ~~IvL~GG~s~~p~l~~~l~~~~~~  303 (344)
T 1jce_A          279 RGIFLTGGGSLLRGLDTLLQKETGI  303 (344)
T ss_dssp             HCEEEESGGGCSBTHHHHHHHHHSS
T ss_pred             CcEEEECccccchHHHHHHHHHHCC
Confidence            4678899999999999999999973

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=96.87  E-value=0.14  Score=45.89  Aligned_cols=152  Identities=7%  Similarity=-0.100  Sum_probs=86.7

Q ss_pred             ceeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEE
Q psy4650          36 KVDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCV  115 (381)
Q Consensus        36 ~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~  115 (381)
                      +..+..++....+.++-...+.|..+++....  ....+.........+++.+.+.. ++++-...+.|.+.+.......
T Consensus       118 ~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~--~~~~~~~~~~~p~glavd~~~g~-lY~~d~~~~~I~~~~~dg~~~~  194 (386)
T 3v65_B          118 AIALDFHHRRELVFWSDVTLDRILRANLNGSN--VEEVVSTGLESPGGLAVDWVHDK-LYWTDSGTSRIEVANLDGAHRK  194 (386)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTSCC--EEEEECSSCSCCCCEEEETTTTE-EEEEETTTTEEEECBTTSCSCE
T ss_pred             cEEEEEecCCCeEEEEeCCCCcEEEEecCCCC--cEEEEeCCCCCccEEEEEeCCCe-EEEEcCCCCeEEEEeCCCCceE
Confidence            45566555445555565666778778775322  11112222234566777765442 5566667788888887755433


Q ss_pred             EEeccCCCCEEEEEEecCCCEEEEEeC-C-CCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEE-eCCCeEEE
Q psy4650         116 QTLEGHGQNISAVCFHPELPIVITGSE-D-GSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIG-YDEGSVLL  190 (381)
Q Consensus       116 ~~~~~~~~~v~~~~~~p~~~~l~s~~~-d-~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~-~~dg~v~i  190 (381)
                      ..+...-.....++++|.+..|..... . +.|..+++............-.....++++|.+..|..+ +..+.|..
T Consensus       195 ~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~  272 (386)
T 3v65_B          195 VLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIER  272 (386)
T ss_dssp             EEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEE
T ss_pred             EeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEE
Confidence            333333345689999997776555543 3 678888876543333233333456788888765544333 33344444

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=96.86  E-value=0.24  Score=44.59  Aligned_cols=154  Identities=8%  Similarity=-0.111  Sum_probs=87.7

Q ss_pred             ceeeeecCCCceEEEEEecCCeEEEecCCCcc--ceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCe
Q psy4650          36 KVDITTNKDMIEYKISYQESSRVKAFNPIQVA--TLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKT  113 (381)
Q Consensus        36 ~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~--~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~  113 (381)
                      +..+..+.....+.++-...+.|+.+++....  ......+.........+++.+.+.. +.++-...+.|.+.+.....
T Consensus       114 ~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~-lY~~d~~~~~I~~~~~~g~~  192 (400)
T 3p5b_L          114 VVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSN-IYWTDSVLGTVSVADTKGVK  192 (400)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTE-EEEEETTTTEEEEECTTTCS
T ss_pred             ceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCc-eEEEECCCCeEEEEeCCCCc
Confidence            44555554444444454555667667664211  1111222223456678888764442 55666778899999987665


Q ss_pred             EEEEeccCCCCEEEEEEecCCCEEEEEeC--CCCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEe-CCCeEEE
Q psy4650         114 CVQTLEGHGQNISAVCFHPELPIVITGSE--DGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGY-DEGSVLL  190 (381)
Q Consensus       114 ~~~~~~~~~~~v~~~~~~p~~~~l~s~~~--d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~-~dg~v~i  190 (381)
                      ....+...-.....++++|.+..|.....  .+.|...++............-.....++++|.+..|..+. ..+.|..
T Consensus       193 ~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~  272 (400)
T 3p5b_L          193 RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISS  272 (400)
T ss_dssp             EEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             eEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEE
Confidence            44444433445689999997776655543  46888888875443333333335677888887665554443 3344444

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=96.83  E-value=0.092  Score=50.07  Aligned_cols=62  Identities=15%  Similarity=0.218  Sum_probs=42.6

Q ss_pred             CCCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCceEEEecCCCEEEEEecCc
Q psy4650         143 DGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKVGREEPAVSMDVNGCKIIWARHSE  215 (381)
Q Consensus       143 d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~~~~~~~~~~d~~~~~~~~~~~~~  215 (381)
                      ++.+.-||+.+|+.+....... ....-.....+.++..++.||.++.          +|..+|+.+|.....
T Consensus       452 ~G~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagg~vf~gt~dg~l~A----------~D~~tG~~lW~~~l~  513 (599)
T 1w6s_A          452 LGQIKAYNAITGDYKWEKMERF-AVWGGTMATAGDLVFYGTLDGYLKA----------RDSDTGDLLWKFKIP  513 (599)
T ss_dssp             CEEEEEECTTTCCEEEEEEESS-CCCSBCEEETTTEEEEECTTSEEEE----------EETTTCCEEEEEECS
T ss_pred             cCeEEEEECCCCCEEeEecCCC-CccCcceEecCCEEEEECCCCeEEE----------EECCCCCEEEEeeCC
Confidence            4789999999999888775321 1111111223556666788888887          999999999997543

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=96.82  E-value=0.17  Score=42.31  Aligned_cols=150  Identities=8%  Similarity=0.094  Sum_probs=88.2

Q ss_pred             ceeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeec-cccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeE
Q psy4650          36 KVDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLY-GHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTC  114 (381)
Q Consensus        36 ~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~-~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~  114 (381)
                      ..-++..++...+.+....++.|...|+.   ..+++.+. +-......+++.+++.  ++++.-.++.+.++++.....
T Consensus        29 lSGla~~~~~~~L~aV~d~~~~I~~ld~~---g~v~~~i~l~g~~D~EGIa~~~~g~--~~vs~E~~~~l~~~~v~~~~~  103 (255)
T 3qqz_A           29 ISSLTWSAQSNTLFSTINKPAAIVEMTTN---GDLIRTIPLDFVKDLETIEYIGDNQ--FVISDERDYAIYVISLTPNSE  103 (255)
T ss_dssp             EEEEEEETTTTEEEEEEETTEEEEEEETT---CCEEEEEECSSCSSEEEEEECSTTE--EEEEETTTTEEEEEEECTTCC
T ss_pred             cceeEEeCCCCEEEEEECCCCeEEEEeCC---CCEEEEEecCCCCChHHeEEeCCCE--EEEEECCCCcEEEEEcCCCCe
Confidence            45566666655555556668888888875   44555542 2225677888876553  666666778888888765432


Q ss_pred             ---EEEec------cCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCC---CeeeEEEe-------cCCcceEEEEEcCC
Q psy4650         115 ---VQTLE------GHGQNISAVCFHPELPIVITGSEDGSVRVWHSGT---HRLEISLT-------YGLERVWTISSLKG  175 (381)
Q Consensus       115 ---~~~~~------~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~---~~~~~~~~-------~~~~~v~~v~~~~~  175 (381)
                         +....      ........++|+|.+..|..+.......+|.+..   +..+..+.       .....+.+++++|.
T Consensus       104 i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~  183 (255)
T 3qqz_A          104 VKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQ  183 (255)
T ss_dssp             EEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETT
T ss_pred             eeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcCC
Confidence               22221      1234568999999987666666554555555531   11122221       12235688999997


Q ss_pred             CCEEEEEe-CCCeEEE
Q psy4650         176 SNNVAIGY-DEGSVLL  190 (381)
Q Consensus       176 ~~~l~~~~-~dg~v~i  190 (381)
                      ...+..-+ ....+..
T Consensus       184 tg~lliLS~~s~~L~~  199 (255)
T 3qqz_A          184 KNTLLVLSHESRALQE  199 (255)
T ss_dssp             TTEEEEEETTTTEEEE
T ss_pred             CCeEEEEECCCCeEEE
Confidence            65544444 4444544

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=96.82  E-value=0.2  Score=43.39  Aligned_cols=145  Identities=11%  Similarity=-0.040  Sum_probs=81.8

Q ss_pred             cceeeeecCCCceEEEEEecCCeEEEecCCCccceeeEe-ecc-ccccEEEEEeee-CCCccEEEEEcC-----------
Q psy4650          35 TKVDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKT-LYG-HEKGVNCVDYYH-GGDKPYLISGAD-----------  100 (381)
Q Consensus        35 ~~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~-l~~-h~~~v~~~~~~~-~~~~~~l~s~~~-----------  100 (381)
                      .|..+...++.+.+.++... +.+..+++.......+.. ..+ .......+++.+ ++.  +.++-..           
T Consensus        81 ~p~gi~~~~~~g~l~v~d~~-~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~--l~v~d~~~~~~~~~~~~~  157 (322)
T 2fp8_A           81 RTYDISYNLQNNQLYIVDCY-YHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGI--VYFTDVSTLYDDRGVQQI  157 (322)
T ss_dssp             CEEEEEEETTTTEEEEEETT-TEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCC--EEEEESCSSCCTTCHHHH
T ss_pred             CCceEEEcCCCCcEEEEECC-CCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCE--EEEECCccccccccccee
Confidence            46777776523444444333 458888875321111111 111 123467889988 775  4444322           


Q ss_pred             ------CCeEEEEECCCCeEEEEeccCCCCEEEEEEecCCCEEEEE-eCCCCEEEEeCCCCe--eeEEEecCCcceEEEE
Q psy4650         101 ------DRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPIVITG-SEDGSVRVWHSGTHR--LEISLTYGLERVWTIS  171 (381)
Q Consensus       101 ------d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~-~~d~~i~vwd~~~~~--~~~~~~~~~~~v~~v~  171 (381)
                            ++.|..||..++.......+ -.....++++|++..+..+ ...+.|.+|++.+..  ....+....+ ...++
T Consensus       158 ~~~~~~~g~v~~~d~~~~~~~~~~~~-~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~  235 (322)
T 2fp8_A          158 MDTSDKTGRLIKYDPSTKETTLLLKE-LHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIK  235 (322)
T ss_dssp             HHHTCCCEEEEEEETTTTEEEEEEEE-ESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEE
T ss_pred             hcccCCCceEEEEeCCCCEEEEeccC-CccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeE
Confidence                  36788888877764332222 1233679999999865544 556889999987521  1111111223 67788


Q ss_pred             EcCCCCEEEEEeC
Q psy4650         172 SLKGSNNVAIGYD  184 (381)
Q Consensus       172 ~~~~~~~l~~~~~  184 (381)
                      +.++|++.++...
T Consensus       236 ~d~~G~l~va~~~  248 (322)
T 2fp8_A          236 RNADGHFWVSSSE  248 (322)
T ss_dssp             ECTTSCEEEEEEE
T ss_pred             ECCCCCEEEEecC
Confidence            8888876555443

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=96.74  E-value=0.093  Score=45.60  Aligned_cols=150  Identities=10%  Similarity=-0.015  Sum_probs=88.4

Q ss_pred             cceeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeec-----------------cccccEEEEEeee-CCCccEEE
Q psy4650          35 TKVDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLY-----------------GHEKGVNCVDYYH-GGDKPYLI   96 (381)
Q Consensus        35 ~~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~-----------------~h~~~v~~~~~~~-~~~~~~l~   96 (381)
                      .|..+...++ +.+++++..++.|..|++..........-.                 .......++++.+ ++.   |.
T Consensus        20 ~p~~i~~d~~-g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~---l~   95 (322)
T 2fp8_A           20 APNSFTFDST-NKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ---LY   95 (322)
T ss_dssp             CCCCEECCTT-CSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE---EE
T ss_pred             CceEEEEcCC-CCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCc---EE
Confidence            4566776665 445667778889999988542211111000                 1123578899987 443   44


Q ss_pred             EEcCCCeEEEEECCCCeEEEEecc-----CCCCEEEEEEec-CCCEEEEEeC-----------------CCCEEEEeCCC
Q psy4650          97 SGADDRLVKIWDYQNKTCVQTLEG-----HGQNISAVCFHP-ELPIVITGSE-----------------DGSVRVWHSGT  153 (381)
Q Consensus        97 s~~~d~~v~vwd~~~~~~~~~~~~-----~~~~v~~~~~~p-~~~~l~s~~~-----------------d~~i~vwd~~~  153 (381)
                      .+...+.+..+|..++.. ..+..     .......+++.| +|...++-..                 ++.|..||..+
T Consensus        96 v~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~  174 (322)
T 2fp8_A           96 IVDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPST  174 (322)
T ss_dssp             EEETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTT
T ss_pred             EEECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCC
Confidence            444445578888765532 22211     112467899999 8886665432                 36788888877


Q ss_pred             CeeeEEEecCCcceEEEEEcCCCCEEEEE-eCCCeEEE
Q psy4650         154 HRLEISLTYGLERVWTISSLKGSNNVAIG-YDEGSVLL  190 (381)
Q Consensus       154 ~~~~~~~~~~~~~v~~v~~~~~~~~l~~~-~~dg~v~i  190 (381)
                      ++....... ......++++|+|+.+..+ +.++.|..
T Consensus       175 ~~~~~~~~~-~~~p~gia~~~dg~~lyv~d~~~~~I~~  211 (322)
T 2fp8_A          175 KETTLLLKE-LHVPGGAEVSADSSFVLVAEFLSHQIVK  211 (322)
T ss_dssp             TEEEEEEEE-ESCCCEEEECTTSSEEEEEEGGGTEEEE
T ss_pred             CEEEEeccC-CccCcceEECCCCCEEEEEeCCCCeEEE
Confidence            764332221 2334568999998865554 45566766

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=96.74  E-value=0.27  Score=43.32  Aligned_cols=152  Identities=7%  Similarity=-0.108  Sum_probs=86.3

Q ss_pred             ceeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEE
Q psy4650          36 KVDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCV  115 (381)
Q Consensus        36 ~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~  115 (381)
                      +..+..++....+.++-...+.|..+++......  ..+.........+++.+.+.. ++.+-...+.|.+.+.......
T Consensus        75 ~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~--~~~~~~~~~p~glavd~~~g~-ly~~d~~~~~I~~~~~dG~~~~  151 (349)
T 3v64_C           75 AIALDFHHRRELVFWSDVTLDRILRANLNGSNVE--EVVSTGLESPGGLAVDWVHDK-LYWTDSGTSRIEVANLDGAHRK  151 (349)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE--EEECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSCSCE
T ss_pred             eEEEEEeccccEEEEEeccCCceEEEecCCCCce--EEEeCCCCCccEEEEecCCCe-EEEEcCCCCeEEEEcCCCCceE
Confidence            4555555544555555556677777777532211  112222234567888765442 5566677789999998765433


Q ss_pred             EEeccCCCCEEEEEEecCCCEEEEEeC-C-CCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEe-CCCeEEE
Q psy4650         116 QTLEGHGQNISAVCFHPELPIVITGSE-D-GSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGY-DEGSVLL  190 (381)
Q Consensus       116 ~~~~~~~~~v~~~~~~p~~~~l~s~~~-d-~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~-~dg~v~i  190 (381)
                      ..+...-.....++++|.+..+..... . +.|..+++............-.....++++|.+..|..+. ..+.|..
T Consensus       152 ~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~  229 (349)
T 3v64_C          152 VLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIER  229 (349)
T ss_dssp             EEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             EEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEE
Confidence            333333345689999997765554443 3 6788888765432222222334567888887655444433 3344444

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=96.66  E-value=0.28  Score=42.49  Aligned_cols=154  Identities=9%  Similarity=-0.098  Sum_probs=89.7

Q ss_pred             cceeeeecCCCceEEEEEecCCeEEEecCCCcc--ceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCC
Q psy4650          35 TKVDITTNKDMIEYKISYQESSRVKAFNPIQVA--TLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNK  112 (381)
Q Consensus        35 ~~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~--~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~  112 (381)
                      .+..+..++....+.++-...+.|..+++....  ......+........++++.+.+.. +.++-...+.|.+.+....
T Consensus        31 ~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~-ly~~d~~~~~I~~~~~~g~  109 (316)
T 1ijq_A           31 NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSN-IYWTDSVLGTVSVADTKGV  109 (316)
T ss_dssp             SEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSS
T ss_pred             ceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCe-EEEEECCCCEEEEEeCCCC
Confidence            456677776556666666677889988875310  1111122222245578888765442 5566677889999998755


Q ss_pred             eEEEEeccCCCCEEEEEEecCCCEEEEEeCC--CCEEEEeCCCCeeeEEE-ecCCcceEEEEEcCCCCEEEEEe-CCCeE
Q psy4650         113 TCVQTLEGHGQNISAVCFHPELPIVITGSED--GSVRVWHSGTHRLEISL-TYGLERVWTISSLKGSNNVAIGY-DEGSV  188 (381)
Q Consensus       113 ~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d--~~i~vwd~~~~~~~~~~-~~~~~~v~~v~~~~~~~~l~~~~-~dg~v  188 (381)
                      .....+...-.....++++|.+..+..+...  +.|...++.... ...+ ...-.....++++|++..|..+. ..+.|
T Consensus       110 ~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~-~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I  188 (316)
T 1ijq_A          110 KRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSI  188 (316)
T ss_dssp             SEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC-EEEEECSSCSCEEEEEEETTTTEEEEEETTTTEE
T ss_pred             ceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCC-eEEEEECCCCCceEEEEeccCCEEEEEECCCCeE
Confidence            4333333333456899999977755554442  678888876433 3323 22334577888888765544433 33445


Q ss_pred             EE
Q psy4650         189 LL  190 (381)
Q Consensus       189 ~i  190 (381)
                      ..
T Consensus       189 ~~  190 (316)
T 1ijq_A          189 SS  190 (316)
T ss_dssp             EE
T ss_pred             EE
Confidence            44

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=96.62  E-value=0.29  Score=43.92  Aligned_cols=141  Identities=11%  Similarity=0.063  Sum_probs=86.1

Q ss_pred             CCceEEEEEecCCeEEEecCCCccceeeEeecc--ccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCe--------
Q psy4650          44 DMIEYKISYQESSRVKAFNPIQVATLILKTLYG--HEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKT--------  113 (381)
Q Consensus        44 ~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~--h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~--------  113 (381)
                      ++.++++..+  +.+|.-+......-..-.+..  --+.|..+..+|+|+  +||.. .+..|.|-.+..+.        
T Consensus        31 n~t~i~~a~~--n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~--lLAl~-g~~~V~Vv~LP~~~~~~~~~~~  105 (452)
T 3pbp_A           31 NGTRIVFIQD--NIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGD--LLCLF-NDNEIFVMEVPWGYSNVEDVSI  105 (452)
T ss_dssp             TTTEEEEEET--TEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSS--EEEEE-CSSEEEEEECCTTCSCCCCHHH
T ss_pred             CCCEEEEEEC--CEEEEEECCCCCcceEEecCcccccCceeEEEECCCCC--EEEEe-cCCeEEEEEecCccccCccccc
Confidence            3355554433  578877765322221222222  123578899999887  66655 46688888776321        


Q ss_pred             ----EEEEecc------CCCCEEEEEEecCC---CEEEEEeCCCCEEEEeCCCCe--eeEEEe---------cCCcceEE
Q psy4650         114 ----CVQTLEG------HGQNISAVCFHPEL---PIVITGSEDGSVRVWHSGTHR--LEISLT---------YGLERVWT  169 (381)
Q Consensus       114 ----~~~~~~~------~~~~v~~~~~~p~~---~~l~s~~~d~~i~vwd~~~~~--~~~~~~---------~~~~~v~~  169 (381)
                          ..+.+.-      ...+|..+.|||-+   ..|++-..|+.|++||+....  +. .++         .....+.+
T Consensus       106 ~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S  184 (452)
T 3pbp_A          106 QDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITD  184 (452)
T ss_dssp             HHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEE
T ss_pred             ccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEE
Confidence                1122221      24679999999954   478888999999999998521  11 222         12256788


Q ss_pred             EEEcCCCCEEEEEe--CCCeEEE
Q psy4650         170 ISSLKGSNNVAIGY--DEGSVLL  190 (381)
Q Consensus       170 v~~~~~~~~l~~~~--~dg~v~i  190 (381)
                      ++|.+++-.|...+  ..|.|.-
T Consensus       185 ~~Fg~~~lTLYvl~~t~~GDIYA  207 (452)
T 3pbp_A          185 LEFSKDGLTLYCLNTTEGGDIFA  207 (452)
T ss_dssp             EEECTTSSCEEEEECTTSCEEEE
T ss_pred             EEEcCCCcEEEEEecCCCCCEEE
Confidence            88988776555544  6666655

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=96.57  E-value=0.08  Score=50.51  Aligned_cols=150  Identities=12%  Similarity=0.073  Sum_probs=90.7

Q ss_pred             EEEEecCCeEEEecCCCccceeeEe--eccccc--cEEEEEeeeCCCccEEEEEc------CCCeEEEEECCCCeEEEEe
Q psy4650          49 KISYQESSRVKAFNPIQVATLILKT--LYGHEK--GVNCVDYYHGGDKPYLISGA------DDRLVKIWDYQNKTCVQTL  118 (381)
Q Consensus        49 ~~s~~~d~~v~i~~~~~~~~~~~~~--l~~h~~--~v~~~~~~~~~~~~~l~s~~------~d~~v~vwd~~~~~~~~~~  118 (381)
                      ++.++.++.+..+|..+..  .+..  +..+..  .+.+-....++   .++.++      .++.|..+|..+|+.+..+
T Consensus       124 V~v~t~dg~l~AlDa~TG~--~~W~~~~~~~~~~~~~~ssP~v~~g---~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~  198 (599)
T 1w6s_A          124 ILKTQLDGNVAALNAETGE--TVWKVENSDIKVGSTLTIAPYVVKD---KVIIGSSGAELGVRGYLTAYDVKTGEQVWRA  198 (599)
T ss_dssp             EEEECTTSEEEEEETTTCC--EEEEEECCCGGGTCBCCSCCEEETT---EEEECCBCGGGTCCCEEEEEETTTCCEEEEE
T ss_pred             EEEEcCCCEEEEEECCCCC--EEEeecCCCCCccceeecCCEEECC---EEEEEecccccCCCCeEEEEECCCCcEEEEE
Confidence            6667788899999886432  2232  222111  22211111122   344444      4899999999999988776


Q ss_pred             ccCCCC-------------------------------------E-EEEEEecCCCEEEEEeCC----------------C
Q psy4650         119 EGHGQN-------------------------------------I-SAVCFHPELPIVITGSED----------------G  144 (381)
Q Consensus       119 ~~~~~~-------------------------------------v-~~~~~~p~~~~l~s~~~d----------------~  144 (381)
                      ......                                     + ...++.+....+..+..+                +
T Consensus       199 ~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~  278 (599)
T 1w6s_A          199 YATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTM  278 (599)
T ss_dssp             ESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSS
T ss_pred             cCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccc
Confidence            532110                                     0 134566777776666554                3


Q ss_pred             CEEEEeCCCCeeeEEEecCCcce---------EEEEEc-CCC---CEEEEEeCCCeEEEEecCCCceEEEecCCCEEEEE
Q psy4650         145 SVRVWHSGTHRLEISLTYGLERV---------WTISSL-KGS---NNVAIGYDEGSVLLKVGREEPAVSMDVNGCKIIWA  211 (381)
Q Consensus       145 ~i~vwd~~~~~~~~~~~~~~~~v---------~~v~~~-~~~---~~l~~~~~dg~v~i~~~~~~~~~~~d~~~~~~~~~  211 (381)
                      .|.-+|..+|+.+..+.......         .-+... .+|   ..++.++.+|.+.+          +|..+|+++|.
T Consensus       279 sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~----------lD~~tG~~lw~  348 (599)
T 1w6s_A          279 TIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYT----------LDRTDGALVSA  348 (599)
T ss_dssp             EEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEE----------EETTTCCEEEE
T ss_pred             eEEEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEE----------EECCCCCEeec
Confidence            79999999999998876532211         111111 345   35566677777766          99999999998


Q ss_pred             ec
Q psy4650         212 RH  213 (381)
Q Consensus       212 ~~  213 (381)
                      ..
T Consensus       349 ~~  350 (599)
T 1w6s_A          349 NK  350 (599)
T ss_dssp             EE
T ss_pred             cc
Confidence            65

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=96.52  E-value=0.0078  Score=59.37  Aligned_cols=99  Identities=11%  Similarity=0.027  Sum_probs=64.9

Q ss_pred             cEEEEEee-eCCCccEEE-EEcCC----CeEEEEECCCC-eEEE-EeccCCCCEEEEEEecCCCEEEEEeCC-----CCE
Q psy4650          80 GVNCVDYY-HGGDKPYLI-SGADD----RLVKIWDYQNK-TCVQ-TLEGHGQNISAVCFHPELPIVITGSED-----GSV  146 (381)
Q Consensus        80 ~v~~~~~~-~~~~~~~l~-s~~~d----~~v~vwd~~~~-~~~~-~~~~~~~~v~~~~~~p~~~~l~s~~~d-----~~i  146 (381)
                      .+.+..|| |+|.  +|+ +.+.+    .+|+++|+.++ +.+. .+.   .....++|+|+|+.|+....|     ..|
T Consensus       175 ~~~~~~~S~PDG~--~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~v  249 (751)
T 2xe4_A          175 DVMEVKPAPPEHD--LVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDETLRENKV  249 (751)
T ss_dssp             EEEEEEECTTTTC--EEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTTCCEEEE
T ss_pred             EEeeeEecCCCCC--EEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCCCCCCEE
Confidence            67889999 9987  454 32322    35999999988 6321 111   113468899999877766554     358


Q ss_pred             EEEeCCCCee--eEEEec-CCcceEEEEEcCCCCEEEEEe
Q psy4650         147 RVWHSGTHRL--EISLTY-GLERVWTISSLKGSNNVAIGY  183 (381)
Q Consensus       147 ~vwd~~~~~~--~~~~~~-~~~~v~~v~~~~~~~~l~~~~  183 (381)
                      ..+++.++..  ...+.. .......+.|+|+|++|+..+
T Consensus       250 ~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~  289 (751)
T 2xe4_A          250 WRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGS  289 (751)
T ss_dssp             EEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEE
T ss_pred             EEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEe
Confidence            8888887642  222222 223456789999999887765

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=96.51  E-value=0.43  Score=47.09  Aligned_cols=154  Identities=8%  Similarity=-0.111  Sum_probs=88.2

Q ss_pred             ceeeeecCCCceEEEEEecCCeEEEecCCCcc--ceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCe
Q psy4650          36 KVDITTNKDMIEYKISYQESSRVKAFNPIQVA--TLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKT  113 (381)
Q Consensus        36 ~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~--~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~  113 (381)
                      +..+........+.++-...+.|+.+++....  ......+.........|++.+.+.. ++++-...+.|.+.++....
T Consensus       426 ~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~-LY~tD~~~~~I~v~~ldG~~  504 (791)
T 3m0c_C          426 VVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSN-IYWTDSVLGTVSVADTKGVK  504 (791)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSSS
T ss_pred             eEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCc-EEEEecCCCeEEEEeCCCCe
Confidence            34455554434444555555667766664211  0111222223455667888776553 66677778899999987655


Q ss_pred             EEEEeccCCCCEEEEEEecCCCEEEEEeC--CCCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEe-CCCeEEE
Q psy4650         114 CVQTLEGHGQNISAVCFHPELPIVITGSE--DGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGY-DEGSVLL  190 (381)
Q Consensus       114 ~~~~~~~~~~~v~~~~~~p~~~~l~s~~~--d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~-~dg~v~i  190 (381)
                      ....+...-.....|+++|.+..|.....  .+.|...++.+......+...-.....|++++.+..|..+. ..+.|..
T Consensus       505 ~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~  584 (791)
T 3m0c_C          505 RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISS  584 (791)
T ss_dssp             EEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             EEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEE
Confidence            43434334445789999998766655543  36788888875544333333335678888887655544443 3334444

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=96.50  E-value=0.43  Score=42.70  Aligned_cols=134  Identities=6%  Similarity=-0.074  Sum_probs=76.2

Q ss_pred             ceeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCC-CeEEEEECCCCeE
Q psy4650          36 KVDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADD-RLVKIWDYQNKTC  114 (381)
Q Consensus        36 ~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d-~~v~vwd~~~~~~  114 (381)
                      |..+..+.....+.++-...+.|.++++......  ..+.........+++.|.+.. ++.+-... +.|...+......
T Consensus       161 p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~--~l~~~~l~~P~giavdp~~g~-ly~td~~~~~~I~r~~~dG~~~  237 (386)
T 3v65_B          161 PGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRK--VLLWQSLEKPRAIALHPMEGT-IYWTDWGNTPRIEASSMDGSGR  237 (386)
T ss_dssp             CCCEEEETTTTEEEEEETTTTEEEECBTTSCSCE--EEECSSCSCEEEEEEETTTTE-EEEEECSSSCEEEEEETTSCSC
T ss_pred             ccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceE--EeecCCCCCCcEEEEEcCCCe-EEEeccCCCCEEEEEeCCCCCc
Confidence            4445555444555556666678888887532211  122233456788999886553 44444444 7888888765443


Q ss_pred             EEEeccCCCCEEEEEEecCCCEEEEE-eCCCCEEEEeCCCCeeeEEEecCCcceEEEEE
Q psy4650         115 VQTLEGHGQNISAVCFHPELPIVITG-SEDGSVRVWHSGTHRLEISLTYGLERVWTISS  172 (381)
Q Consensus       115 ~~~~~~~~~~v~~~~~~p~~~~l~s~-~~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~  172 (381)
                      .......-.....++++|++..|..+ ...+.|..+|+........+.........+++
T Consensus       238 ~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav  296 (386)
T 3v65_B          238 RIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV  296 (386)
T ss_dssp             EEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEE
T ss_pred             EEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEE
Confidence            33333333456899999877765554 44678999998754332223222233444444

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=96.46  E-value=0.47  Score=42.69  Aligned_cols=131  Identities=11%  Similarity=-0.005  Sum_probs=80.4

Q ss_pred             EEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCC----eEEEEeccCCC
Q psy4650          48 YKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNK----TCVQTLEGHGQ  123 (381)
Q Consensus        48 ~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~----~~~~~~~~~~~  123 (381)
                      +++.+. ...|+..++....   ...+......+..++|++.+.. ++.+-...+.|..+++...    .....+.....
T Consensus        85 ~ll~~~-~~~I~~i~l~~~~---~~~~~~~~~~~~~l~~d~~~~~-lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~  159 (400)
T 3p5b_L           85 YLFFTN-RHEVRKMTLDRSE---YTSLIPNLRNVVALDTEVASNR-IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQ  159 (400)
T ss_dssp             EEEEEE-TTEEEEECTTSCS---CEEEECSCSCEEEEEEETTTTE-EEEEETTTTEEEEEEC------CCCEEEECSSCS
T ss_pred             eeEEec-cceeEEEccCCcc---eeEeccccCcceEEeeeeccCc-eEEEecCCCeEEEEEcccCCCCCcceEEEeCCCC
Confidence            444433 3588888886422   2223334567889999986553 5556667788988888652    22333333344


Q ss_pred             CEEEEEEecCCCEE-EEEeCCCCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEe
Q psy4650         124 NISAVCFHPELPIV-ITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGY  183 (381)
Q Consensus       124 ~v~~~~~~p~~~~l-~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~  183 (381)
                      ....+++.+.+..| .+-...+.|.+.++.+......+...-.....++++|.+..+....
T Consensus       160 ~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td  220 (400)
T 3p5b_L          160 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTD  220 (400)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEE
T ss_pred             CcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEe
Confidence            66889999855544 4445578899999886654444444445678899998655544443

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=96.46  E-value=0.042  Score=54.17  Aligned_cols=141  Identities=9%  Similarity=-0.051  Sum_probs=78.4

Q ss_pred             eeeec-CCCceEEEEEecCC----eEEEecCCCc-cceeeEeeccccccEEEEEeeeCCCccEEEEEcCC-----CeEEE
Q psy4650          38 DITTN-KDMIEYKISYQESS----RVKAFNPIQV-ATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADD-----RLVKI  106 (381)
Q Consensus        38 ~i~~~-~~~~~~~~s~~~d~----~v~i~~~~~~-~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d-----~~v~v  106 (381)
                      ....+ +++..+.++...+|    +|+++|+... . .....+.   ....++.|+|++.  .|+....|     ..|.+
T Consensus       178 ~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~-~l~~~~~---~~~~~~~WspDg~--~l~y~~~d~~~~~~~v~~  251 (751)
T 2xe4_A          178 EVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQ-TIADKVS---GTNGEIVWGPDHT--SLFYVTKDETLRENKVWR  251 (751)
T ss_dssp             EEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTC-CCCCCEE---EECSCCEECSSTT--EEEEEEECTTCCEEEEEE
T ss_pred             eeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCE-eCCcccc---CceeeEEEecCCC--EEEEEEECCCCCCCEEEE
Confidence            45567 77665555555443    4889998653 2 1111111   1234678999987  34444443     36778


Q ss_pred             EECCCCe--EEEEecc-CCCCEEEEEEecCCCEEEEEeC---CCCEEEEeCCCCe-ee--EEE-ecCCcceEEEEEcCCC
Q psy4650         107 WDYQNKT--CVQTLEG-HGQNISAVCFHPELPIVITGSE---DGSVRVWHSGTHR-LE--ISL-TYGLERVWTISSLKGS  176 (381)
Q Consensus       107 wd~~~~~--~~~~~~~-~~~~v~~~~~~p~~~~l~s~~~---d~~i~vwd~~~~~-~~--~~~-~~~~~~v~~v~~~~~~  176 (381)
                      +++.++.  ....+.+ .......+.|+|+|++|+..+.   ...|.++|+.++. ..  ..+ ........++.|+.++
T Consensus       252 ~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~g~  331 (751)
T 2xe4_A          252 HVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHGTS  331 (751)
T ss_dssp             EETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEETTT
T ss_pred             EECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeeeCC
Confidence            8887763  2233332 2344678899999997765542   4468888988752 12  222 2233444555554444


Q ss_pred             CEEEEEeC
Q psy4650         177 NNVAIGYD  184 (381)
Q Consensus       177 ~~l~~~~~  184 (381)
                      .+++....
T Consensus       332 ~l~~~t~~  339 (751)
T 2xe4_A          332 HLVILTNE  339 (751)
T ss_dssp             EEEEEECT
T ss_pred             EEEEEeCC
Confidence            44444433

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=96.43  E-value=0.4  Score=41.52  Aligned_cols=124  Identities=10%  Similarity=-0.025  Sum_probs=74.5

Q ss_pred             CeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCC----CeEEEEeccCCCCEEEEEEe
Q psy4650          56 SRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQN----KTCVQTLEGHGQNISAVCFH  131 (381)
Q Consensus        56 ~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~----~~~~~~~~~~~~~v~~~~~~  131 (381)
                      ..|+..++....  ....+ .......+++|++.+.. ++.+-...+.|..++..+    ......+...-.....+++.
T Consensus        10 ~~I~~i~~~~~~--~~~~~-~~~~~p~g~~~d~~~~~-ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd   85 (316)
T 1ijq_A           10 HEVRKMTLDRSE--YTSLI-PNLRNVVALDTEVASNR-IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVD   85 (316)
T ss_dssp             SSEEEEETTSCC--CEEEE-CSCSSEEEEEEETTTTE-EEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEE
T ss_pred             CeEEEEECCCcc--eEehh-cCCCceEEEEEEeCCCE-EEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEe
Confidence            468888876422  22222 23456789999886553 556667788999999876    22222233222345788998


Q ss_pred             cCCCEE-EEEeCCCCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEe
Q psy4650         132 PELPIV-ITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGY  183 (381)
Q Consensus       132 p~~~~l-~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~  183 (381)
                      +.+..+ .+-...+.|.+.|+.+......+.........++++|.+..+..+.
T Consensus        86 ~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d  138 (316)
T 1ijq_A           86 WIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTD  138 (316)
T ss_dssp             TTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEE
T ss_pred             ecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEc
Confidence            765544 4445678899999876543333333345678899998655444433

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=96.41  E-value=0.31  Score=42.28  Aligned_cols=149  Identities=7%  Similarity=0.002  Sum_probs=95.2

Q ss_pred             eeeecCCCceEEEEEecCCeEEEecCCCccceeeEeecc----ccc--cEEEEEe---eeCCCccEEEEEc---------
Q psy4650          38 DITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYG----HEK--GVNCVDY---YHGGDKPYLISGA---------   99 (381)
Q Consensus        38 ~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~----h~~--~v~~~~~---~~~~~~~~l~s~~---------   99 (381)
                      .+.++.....+.++.-..++|..|++.......+ .+.+    ..+  .+.++.|   .|++  ++++...         
T Consensus        17 ~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~g--rL~vv~~~~~af~~~g   93 (334)
T 2p9w_A           17 DTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-VIDGASSNGDGEQQMSGLSLLTHDNSK--RLFAVMKNAKSFNFAD   93 (334)
T ss_dssp             CEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE-CCTTTCCSSCCSEEEEEEEESSSSSCC--EEEEEEEETTTTCTTS
T ss_pred             CccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-ecCCccccCCCcceeeEEEEeccCCCC--cEEEEEcccccccccc
Confidence            4445555566777777899999999964222222 3433    111  3578888   5653  3555432         


Q ss_pred             ----CCCeEEEEECC---CCeEEEEec--cC-----------CCCEEEEEEecCCCEEEEEeCC-CCEEEEeCCCCeeeE
Q psy4650         100 ----DDRLVKIWDYQ---NKTCVQTLE--GH-----------GQNISAVCFHPELPIVITGSED-GSVRVWHSGTHRLEI  158 (381)
Q Consensus       100 ----~d~~v~vwd~~---~~~~~~~~~--~~-----------~~~v~~~~~~p~~~~l~s~~~d-~~i~vwd~~~~~~~~  158 (381)
                          .+..|..+|+.   +++.+....  ..           ......++..++|+.-++++.. +.|...+.... ...
T Consensus        94 ~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~-~~~  172 (334)
T 2p9w_A           94 QSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGK-TVS  172 (334)
T ss_dssp             CCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSC-CEE
T ss_pred             cccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCC-EEe
Confidence                26789999998   776554432  11           1247889999999988877777 77777776544 222


Q ss_pred             EEec------CCcceEEEEEcCCCCEEEEEeCCCeEEE
Q psy4650         159 SLTY------GLERVWTISSLKGSNNVAIGYDEGSVLL  190 (381)
Q Consensus       159 ~~~~------~~~~v~~v~~~~~~~~l~~~~~dg~v~i  190 (381)
                      .+..      .....+.++++|+|..|++....|.+..
T Consensus       173 ~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~  210 (334)
T 2p9w_A          173 TFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTA  210 (334)
T ss_dssp             EEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEE
T ss_pred             eeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEE
Confidence            2211      1123568999999998888766777766

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=96.41  E-value=0.16  Score=48.19  Aligned_cols=154  Identities=10%  Similarity=0.055  Sum_probs=88.9

Q ss_pred             EEEEEecCCeEEEecCCCccceeeEeeccccc--cEEEEEeeeCCCccEEEEEcC------CCeEEEEECCCCeEEEEec
Q psy4650          48 YKISYQESSRVKAFNPIQVATLILKTLYGHEK--GVNCVDYYHGGDKPYLISGAD------DRLVKIWDYQNKTCVQTLE  119 (381)
Q Consensus        48 ~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~--~v~~~~~~~~~~~~~l~s~~~------d~~v~vwd~~~~~~~~~~~  119 (381)
                      .++.++.++.+..+|..+....=...+.++..  .+.+-....+ .  .++.++.      ++.|..+|..+|+.+..+.
T Consensus       117 ~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~-g--~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~  193 (571)
T 2ad6_A          117 QIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAK-D--TVLMGCSGAELGVRGAVNAFDLKTGELKWRAF  193 (571)
T ss_dssp             EEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEET-T--EEEEECBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred             EEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEEEC-C--EEEEEecCCccCCCCEEEEEECCCCcEEEEEc
Confidence            46666778899999986432221122222211  1221111112 2  3444443      7999999999999887765


Q ss_pred             cCCCC-------------------------------------E-EEEEEecCCCEEEEEeCC----------------CC
Q psy4650         120 GHGQN-------------------------------------I-SAVCFHPELPIVITGSED----------------GS  145 (381)
Q Consensus       120 ~~~~~-------------------------------------v-~~~~~~p~~~~l~s~~~d----------------~~  145 (381)
                      .....                                     + ..+++.+....+..+..+                +.
T Consensus       194 ~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~  273 (571)
T 2ad6_A          194 ATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMT  273 (571)
T ss_dssp             SSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTE
T ss_pred             cCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEE
Confidence            32110                                     0 135667766666555432                25


Q ss_pred             EEEEeCCCCeeeEEEecCCc---------ceEEEEEcCCCC---EEEEEeCCCeEEEEecCCCceEEEecCCCEEEEEec
Q psy4650         146 VRVWHSGTHRLEISLTYGLE---------RVWTISSLKGSN---NVAIGYDEGSVLLKVGREEPAVSMDVNGCKIIWARH  213 (381)
Q Consensus       146 i~vwd~~~~~~~~~~~~~~~---------~v~~v~~~~~~~---~l~~~~~dg~v~i~~~~~~~~~~~d~~~~~~~~~~~  213 (381)
                      |.-+|..+|+.+..+.....         ...-+...++|+   .++.++.+|.+.+          +|..+|+++|...
T Consensus       274 v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~----------lD~~tG~~~w~~~  343 (571)
T 2ad6_A          274 IWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYT----------LNRENGNLIVAEK  343 (571)
T ss_dssp             EEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEE----------EETTTCCEEEEEE
T ss_pred             EEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEE----------EECCCCCEEeeec
Confidence            99999999999888764211         111112223453   4556666776666          9999999999864


Q ss_pred             C
Q psy4650         214 S  214 (381)
Q Consensus       214 ~  214 (381)
                      .
T Consensus       344 ~  344 (571)
T 2ad6_A          344 V  344 (571)
T ss_dssp             S
T ss_pred             c
Confidence            3

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=96.22  E-value=0.31  Score=40.74  Aligned_cols=117  Identities=6%  Similarity=0.029  Sum_probs=80.4

Q ss_pred             EeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEEEecc-CCCCEEEEEEecCCCEEEEEeCCCCEEEEe
Q psy4650          72 KTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEG-HGQNISAVCFHPELPIVITGSEDGSVRVWH  150 (381)
Q Consensus        72 ~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~-~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd  150 (381)
                      +.+.|-.+.+..++|+|++. .+++....++.|...|.. ++.++.+.- -......+++.+++.++++.-.++.+.+++
T Consensus        20 ~~l~g~~~~lSGla~~~~~~-~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~   97 (255)
T 3qqz_A           20 KEIAGITNNISSLTWSAQSN-TLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVIS   97 (255)
T ss_dssp             EECTTCCSCEEEEEEETTTT-EEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEE
T ss_pred             eECCCcccCcceeEEeCCCC-EEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEE
Confidence            45667777899999999765 355556678899999988 776666632 124568889988887767665678899998


Q ss_pred             CCCCee---eEEEe------cCCcceEEEEEcCCCCEEEEEeCCCeEEE
Q psy4650         151 SGTHRL---EISLT------YGLERVWTISSLKGSNNVAIGYDEGSVLL  190 (381)
Q Consensus       151 ~~~~~~---~~~~~------~~~~~v~~v~~~~~~~~l~~~~~dg~v~i  190 (381)
                      +.....   +....      ........++|+|.+..|.++.......+
T Consensus        98 v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i  146 (255)
T 3qqz_A           98 LTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEV  146 (255)
T ss_dssp             ECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEE
T ss_pred             cCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceE
Confidence            765442   22221      12334689999999877777666555444

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=96.20  E-value=0.64  Score=42.26  Aligned_cols=116  Identities=9%  Similarity=0.040  Sum_probs=66.9

Q ss_pred             hcceeeeecCCCceEEEEEecCC----eEEEecCCCccceeeEeeccccccEEEEEeee-CCCccEEEEEcCCCeEEEEE
Q psy4650          34 ETKVDITTNKDMIEYKISYQESS----RVKAFNPIQVATLILKTLYGHEKGVNCVDYYH-GGDKPYLISGADDRLVKIWD  108 (381)
Q Consensus        34 ~~~~~i~~~~~~~~~~~s~~~d~----~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~-~~~~~~l~s~~~d~~v~vwd  108 (381)
                      ..|+.+...+++..+.++...++    .+..++... .......+. ......+++++| ++.  ++++-..++.|..++
T Consensus       179 ~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g-~~~~~~~l~-~~~~p~giavdp~~g~--lyv~d~~~~~V~~~~  254 (430)
T 3tc9_A          179 SKVRTICWTHEADSMIITNDQNNNDRPNNYILTRES-GFKVITELT-KGQNCNGAETHPINGE--LYFNSWNAGQVFRYD  254 (430)
T ss_dssp             SCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGG-TSCSEEEEE-ECSSCCCEEECTTTCC--EEEEETTTTEEEEEE
T ss_pred             CCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCC-ceeeeeeec-cCCCceEEEEeCCCCE--EEEEECCCCEEEEEE
Confidence            45777777776553444443222    233344321 111112222 123456778888 444  666666788999999


Q ss_pred             CCCCeEEEEecc-CCCCEEEEEEecCCCEE-EEEeCCCCEEEEeCCC
Q psy4650         109 YQNKTCVQTLEG-HGQNISAVCFHPELPIV-ITGSEDGSVRVWHSGT  153 (381)
Q Consensus       109 ~~~~~~~~~~~~-~~~~v~~~~~~p~~~~l-~s~~~d~~i~vwd~~~  153 (381)
                      ..++........ ....-..++|+|++..+ ++-...+.|..++...
T Consensus       255 ~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~  301 (430)
T 3tc9_A          255 FTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDW  301 (430)
T ss_dssp             TTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred             CCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCc
Confidence            987764222221 12345789999999954 4445578899887653

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=96.14  E-value=0.63  Score=40.93  Aligned_cols=117  Identities=4%  Similarity=-0.121  Sum_probs=71.0

Q ss_pred             ceeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCC-CeEEEEECCCCeE
Q psy4650          36 KVDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADD-RLVKIWDYQNKTC  114 (381)
Q Consensus        36 ~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d-~~v~vwd~~~~~~  114 (381)
                      |..+..+.....+.++-...+.|.++++.......  .+.........+++.|.+.. ++.+-... +.|...+......
T Consensus       118 p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~--l~~~~l~~P~~iavdp~~g~-ly~td~~~~~~I~r~~~dG~~~  194 (349)
T 3v64_C          118 PGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV--LLWQSLEKPRAIALHPMEGT-IYWTDWGNTPRIEASSMDGSGR  194 (349)
T ss_dssp             CCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE--EECTTCSCEEEEEEETTTTE-EEEEECSSSCEEEEEETTSCSC
T ss_pred             ccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEE--EEeCCCCCcceEEEecCcCe-EEEeccCCCCEEEEEeCCCCCc
Confidence            44555555445555666667788888875322111  12233456788999986552 44454445 7888888765433


Q ss_pred             EEEeccCCCCEEEEEEecCCCEEEEE-eCCCCEEEEeCCCCe
Q psy4650         115 VQTLEGHGQNISAVCFHPELPIVITG-SEDGSVRVWHSGTHR  155 (381)
Q Consensus       115 ~~~~~~~~~~v~~~~~~p~~~~l~s~-~~d~~i~vwd~~~~~  155 (381)
                      ...+...-.....++++|++..|..+ ...+.|..+|+....
T Consensus       195 ~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~  236 (349)
T 3v64_C          195 RIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSH  236 (349)
T ss_dssp             EESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred             EEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCc
Confidence            22222233456899999977766555 446789999987543

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=96.14  E-value=0.62  Score=40.80  Aligned_cols=134  Identities=11%  Similarity=0.163  Sum_probs=85.9

Q ss_pred             EEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeC----CCc--cEEEEEcC--CCeEEEEECC--CCeEEEE
Q psy4650          48 YKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHG----GDK--PYLISGAD--DRLVKIWDYQ--NKTCVQT  117 (381)
Q Consensus        48 ~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~----~~~--~~l~s~~~--d~~v~vwd~~--~~~~~~~  117 (381)
                      .+++..+.+.+.+||+   ..+.++.+..  +.++.+..-|+    +..  ..+++.-.  +.+|.+|++.  ++. +..
T Consensus        42 ~ii~t~k~~gL~Vydl---~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~~  115 (355)
T 3amr_A           42 KLITTNKKSGLVVYSL---DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQS  115 (355)
T ss_dssp             EEEEEETTTEEEEEET---TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EEE
T ss_pred             EEEEEcCCCCEEEEcC---CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-eee
Confidence            4555566789999999   3566677754  56677766551    211  12445555  6899999763  333 444


Q ss_pred             ecc------CC-CCEEEEEE--ecC-CC-EEEEEeCCCCEEEEeCC-------CCeeeEEEecCCcceEEEEEcCCCCEE
Q psy4650         118 LEG------HG-QNISAVCF--HPE-LP-IVITGSEDGSVRVWHSG-------THRLEISLTYGLERVWTISSLKGSNNV  179 (381)
Q Consensus       118 ~~~------~~-~~v~~~~~--~p~-~~-~l~s~~~d~~i~vwd~~-------~~~~~~~~~~~~~~v~~v~~~~~~~~l  179 (381)
                      +..      .. ..+..+++  +|. +. ++.....+|.+..|++.       +++.++++... ..+..+...+....|
T Consensus       116 i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lg-sq~EgcvvDd~~g~L  194 (355)
T 3amr_A          116 MTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMN-SQTEGMAADDEYGRL  194 (355)
T ss_dssp             CSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECS-SCEEEEEEETTTTEE
T ss_pred             ccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCC-CCcceEEEcCCCCeE
Confidence            422      11 34455666  674 44 57777888999999882       34556666644 467788888888888


Q ss_pred             EEEeCCCeE
Q psy4650         180 AIGYDEGSV  188 (381)
Q Consensus       180 ~~~~~dg~v  188 (381)
                      ..+-.+.-|
T Consensus       195 yv~eEd~GI  203 (355)
T 3amr_A          195 YIAEEDEAI  203 (355)
T ss_dssp             EEEETTTEE
T ss_pred             EEecccceE
Confidence            888877543

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=96.02  E-value=0.092  Score=49.98  Aligned_cols=77  Identities=16%  Similarity=0.100  Sum_probs=52.3

Q ss_pred             CCCeEEEEECCCCeEEEEeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEecCCcce-EEEEEcCCCC
Q psy4650         100 DDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERV-WTISSLKGSN  177 (381)
Q Consensus       100 ~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v-~~v~~~~~~~  177 (381)
                      .+|.|..||..+++.+.....+. ++..-.....+.+++.++.|+.++.||..+|+.+..+....... .-+.|..+|+
T Consensus       464 ~~G~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~  541 (582)
T 1flg_A          464 HVGSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGE  541 (582)
T ss_dssp             CSEEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTE
T ss_pred             CcceEEEEECCCCCEEEEecCCC-CCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEECCE
Confidence            36889999999999887765432 22221222346677889999999999999999999887643321 1244445554

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=96.01  E-value=0.68  Score=40.16  Aligned_cols=153  Identities=5%  Similarity=-0.117  Sum_probs=86.7

Q ss_pred             ceeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEE
Q psy4650          36 KVDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCV  115 (381)
Q Consensus        36 ~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~  115 (381)
                      +..+.+......+..+-...+.|..+++...... ...+........++++.+.+.. ++.+-...+.|.+++.......
T Consensus        37 ~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~-~~~~~~~l~~p~glavd~~~g~-ly~~d~~~~~I~~~~~dG~~~~  114 (318)
T 3sov_A           37 AAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESV-QNVVVSGLLSPDGLACDWLGEK-LYWTDSETNRIEVSNLDGSLRK  114 (318)
T ss_dssp             EEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCC-CEEEEECCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSCSCE
T ss_pred             cEEEEEEeCCCEEEEEECCCCcEEEEEccCCCce-EEEEcCCCCCccEEEEEcCCCe-EEEEECCCCEEEEEECCCCcEE
Confidence            4455555544555555566678888877542111 1112222234567788764442 5566667789999998755433


Q ss_pred             EEeccCCCCEEEEEEecCCCEEEEEeC--CCCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEe-CCCeEEE
Q psy4650         116 QTLEGHGQNISAVCFHPELPIVITGSE--DGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGY-DEGSVLL  190 (381)
Q Consensus       116 ~~~~~~~~~v~~~~~~p~~~~l~s~~~--d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~-~dg~v~i  190 (381)
                      ..+...-.....++++|.+..+..+..  .+.|...++............-.....++++|++..|..+. ..+.|..
T Consensus       115 ~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~  192 (318)
T 3sov_A          115 VLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHK  192 (318)
T ss_dssp             EEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             EEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEE
Confidence            333333345689999997766655543  56788888764332222222334567888888655444333 3344444

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=96.00  E-value=0.61  Score=42.48  Aligned_cols=72  Identities=8%  Similarity=0.057  Sum_probs=46.5

Q ss_pred             ccEEEEEeee-CCCccEEEEEcCCCeEEEEECCCCeEEEEe-c-cCCCCEEEEEEecCCCEEEE-EeCCCCEEEEeCC
Q psy4650          79 KGVNCVDYYH-GGDKPYLISGADDRLVKIWDYQNKTCVQTL-E-GHGQNISAVCFHPELPIVIT-GSEDGSVRVWHSG  152 (381)
Q Consensus        79 ~~v~~~~~~~-~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~-~-~~~~~v~~~~~~p~~~~l~s-~~~d~~i~vwd~~  152 (381)
                      .....++++| ++.  +.++-..++.|+.++..++.....+ . +....-..++|+|++..|.. -...+.|+.++..
T Consensus       228 ~~P~giavd~~~G~--lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d  303 (433)
T 4hw6_A          228 RGAKTCAVHPQNGK--IYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYN  303 (433)
T ss_dssp             SSBCCCEECTTTCC--EEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBC
T ss_pred             CCCCEEEEeCCCCe--EEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCC
Confidence            3445677877 444  5556667788999998877652222 2 11222357999999985544 4457789998865

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=95.94  E-value=1.4  Score=43.48  Aligned_cols=148  Identities=15%  Similarity=0.108  Sum_probs=90.5

Q ss_pred             ceeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeec---c-ccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCC
Q psy4650          36 KVDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLY---G-HEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQN  111 (381)
Q Consensus        36 ~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~---~-h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~  111 (381)
                      .+++..++++.  +-.|..++.+..|++....-.......   + ....|.++...+++.   |-.|..++-+..|+..+
T Consensus       312 i~~i~~D~~g~--lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~---lWiGt~~~Gl~~~~~~~  386 (795)
T 4a2l_A          312 VRSIFMDSQGG--MWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKN---LWIGTNDGGLNLYNPIT  386 (795)
T ss_dssp             EEEEEECTTSC--EEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSC---EEEEESSSCEEEECTTT
T ss_pred             EEEEEEeCCcC--EEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCC---EEEEECCCCeEEEcCCC
Confidence            44555555544  334555667888887432111111110   0 235688988877665   66677777788899887


Q ss_pred             CeEEEEecc--------CCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEe----cCCcceEEEEEcCCCCEE
Q psy4650         112 KTCVQTLEG--------HGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLT----YGLERVWTISSLKGSNNV  179 (381)
Q Consensus       112 ~~~~~~~~~--------~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~----~~~~~v~~v~~~~~~~~l  179 (381)
                      +........        ....|.++...+++..+..|..++-+..||..+++...-..    .....|.++...++|.+.
T Consensus       387 ~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lw  466 (795)
T 4a2l_A          387 QRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLW  466 (795)
T ss_dssp             CCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEE
T ss_pred             CcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEE
Confidence            754332211        23578999988888845556666679999998876433221    134578899988888755


Q ss_pred             EEEeCCCeEE
Q psy4650         180 AIGYDEGSVL  189 (381)
Q Consensus       180 ~~~~~dg~v~  189 (381)
                      +.. .+|..+
T Consensus       467 igt-~~Gl~~  475 (795)
T 4a2l_A          467 LGT-LSALVR  475 (795)
T ss_dssp             EEE-SSCEEE
T ss_pred             EEe-cCceeE
Confidence            544 355443

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=95.74  E-value=0.34  Score=44.15  Aligned_cols=150  Identities=9%  Similarity=0.047  Sum_probs=84.2

Q ss_pred             hcceeeeecCC--CceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCC---Ce-EEEE
Q psy4650          34 ETKVDITTNKD--MIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADD---RL-VKIW  107 (381)
Q Consensus        34 ~~~~~i~~~~~--~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d---~~-v~vw  107 (381)
                      ..|..+...++  .+.+.++-.. +.|+.+++..   ..+..+.+......++++++++.  ++++....   .. +...
T Consensus       139 ~~P~gvavd~~s~~g~Lyv~D~~-~~I~~id~~~---g~v~~~~~~~~~P~giavd~dG~--lyVad~~~~~~~~gv~~~  212 (433)
T 4hw6_A          139 DNIWRMMFDPNSNYDDLYWVGQR-DAFRHVDFVN---QYVDIKTTNIGQCADVNFTLNGD--MVVVDDQSSDTNTGIYLF  212 (433)
T ss_dssp             SCCCEEEECTTTTTCEEEEECBT-SCEEEEETTT---TEEEEECCCCSCEEEEEECTTCC--EEEEECCSCTTSEEEEEE
T ss_pred             CCCceEEEccccCCCEEEEEeCC-CCEEEEECCC---CEEEEeecCCCCccEEEECCCCC--EEEEcCCCCcccceEEEE
Confidence            35777887763  3444444333 7899999843   22334444456688999999877  45554321   22 2222


Q ss_pred             ECCCCeE-EEEeccCCCCEEEEEEec-CCCEEEEEeCCCCEEEEeCCCCeeeEEE-ec-CCcceEEEEEcCCCCEEEEE-
Q psy4650         108 DYQNKTC-VQTLEGHGQNISAVCFHP-ELPIVITGSEDGSVRVWHSGTHRLEISL-TY-GLERVWTISSLKGSNNVAIG-  182 (381)
Q Consensus       108 d~~~~~~-~~~~~~~~~~v~~~~~~p-~~~~l~s~~~d~~i~vwd~~~~~~~~~~-~~-~~~~v~~v~~~~~~~~l~~~-  182 (381)
                      +...+.. ...+. .-.....++++| ++.+.++-..++.|+.+|..++.....+ .. .......++++|+++.|..+ 
T Consensus       213 ~~~~~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad  291 (433)
T 4hw6_A          213 TRASGFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIY  291 (433)
T ss_dssp             CGGGTTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEE
T ss_pred             ECCCCeecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEe
Confidence            2221110 01111 112336688899 6666555556788999999877652222 21 22233469999999854444 


Q ss_pred             eCCCeEEE
Q psy4650         183 YDEGSVLL  190 (381)
Q Consensus       183 ~~dg~v~i  190 (381)
                      ...+.|..
T Consensus       292 ~~~~~I~~  299 (433)
T 4hw6_A          292 NGKHCIYR  299 (433)
T ss_dssp             TTTTEEEE
T ss_pred             CCCCEEEE
Confidence            44566666

>4a2a_A Cell division protein FTSA, putative; cell cycle, actin, divisome; HET: ATP; 1.80A {Thermotoga maritima} PDB: 1e4g_T* 1e4f_T* 4a2b_A*

Probab=95.63  E-value=0.0099  Score=54.02  Aligned_cols=94  Identities=9%  Similarity=0.038  Sum_probs=71.4

Q ss_pred             HHHHhhhhhhcccc-----ceeeEEEecccCCcccccccChHHHHHHHHHHhhhhhhhhHhhhccccceee---Eeeccc
Q psy4650         262 RAAAETCMHVLSTL-----QSSNVFVESLYDGLDFHHNVSRARFESLIGGLLTSFVQPCMHVLSTLQSSNV---FVESLY  333 (381)
Q Consensus       262 ~~~~e~ak~~lS~~-----~~~~i~~~~l~~g~~~~~~itr~~fe~l~~~l~~~~~~~~~~~Ls~~~~~~~---~~~~~~  333 (381)
                      ...+|+.|+.++..     .+..+.++...  ......++|++|++++.+.++++.+.+++.|.......-   .-..+.
T Consensus       253 ~~~AE~iK~~~g~a~~~~~~~~~i~v~~~~--~~~~~~is~~~l~~ii~p~veei~~~V~~~L~~~~~~~p~~~~~~~~~  330 (419)
T 4a2a_A          253 FEESERLIITHGNAVYNDLKEEEIQYRGLD--GNTIKTTTAKKLSVIIHARLREIMSKSKKFFREVEAKIVEEGEIGIPG  330 (419)
T ss_dssp             HHHHHHHHHHHCCSCCTTCCCCEEEEECTT--SCSEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC--------TT
T ss_pred             HHHHHHHHHHhccCcccCCCCceEEEeecC--CccceEEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccccccCC
Confidence            46788888887642     45567777653  246678999999999999999999999999987543100   123356


Q ss_pred             cCcceEEeecHHHHHHHHHHHHHH
Q psy4650         334 DGLDFHHNVSRARFESLIGGLLTS  357 (381)
Q Consensus       334 ~~~~~~~~~~~~~~e~~~~~~~~~  357 (381)
                      +.++.||+.+.|.+++++++.|+.
T Consensus       331 ~IvLtGG~s~lpgl~e~~~~~~g~  354 (419)
T 4a2a_A          331 GVVLTGGGAKIPRINELATEVFKS  354 (419)
T ss_dssp             CEEEESGGGGSTTHHHHHHHHHTS
T ss_pred             EEEEECchhchhhHHHHHHHHHCC
Confidence            678899999999999999999974

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=95.59  E-value=1  Score=41.57  Aligned_cols=150  Identities=12%  Similarity=0.104  Sum_probs=84.7

Q ss_pred             cceeeeecC-CCceEEEEEecCCeEEEecCCCccceeeEeecc----ccccEEEEEe-------eeCCCccEEEEEcCCC
Q psy4650          35 TKVDITTNK-DMIEYKISYQESSRVKAFNPIQVATLILKTLYG----HEKGVNCVDY-------YHGGDKPYLISGADDR  102 (381)
Q Consensus        35 ~~~~i~~~~-~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~----h~~~v~~~~~-------~~~~~~~~l~s~~~d~  102 (381)
                      .|.-+..+| +...+.++....+.|++.|+...   .+..+-.    .......++|       ++++.  .|..+...+
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~---~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~--~lyvad~~~  214 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNR---MLSSPLNINTIPTNRIRSIAFNKKIEGYADEAE--YMIVAIDYD  214 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTT---EEEEEECCTTSSCSBEEEEEECCCBTTTBCTTC--EEEEEECCC
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCC---EEEEEEccCccccCCCcEEEEeecccccCCCCC--EEEEEeCCC
Confidence            355666776 34555555555567888888642   2233221    2235889999       99876  344443332


Q ss_pred             -------eEEEEECCC-CeEE-----EEeccCCCCEEEEEEecCCC-EEEEEeCCCCEEEEeCC-------CCee-----
Q psy4650         103 -------LVKIWDYQN-KTCV-----QTLEGHGQNISAVCFHPELP-IVITGSEDGSVRVWHSG-------THRL-----  156 (381)
Q Consensus       103 -------~v~vwd~~~-~~~~-----~~~~~~~~~v~~~~~~p~~~-~l~s~~~d~~i~vwd~~-------~~~~-----  156 (381)
                             .|.+.+... +...     ..+... .....++.+|++. ++++-..++.|..+|+.       ++..     
T Consensus       215 ~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~  293 (496)
T 3kya_A          215 GKGDESPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIV  293 (496)
T ss_dssp             TTGGGEEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBG
T ss_pred             CCcccCceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccc
Confidence                   255555333 1211     122211 1236778899554 55555668889999987       5543     


Q ss_pred             ------eEE-Ee-cCCcceEEEEEcCCCCEEEEE-eCCCeEEE
Q psy4650         157 ------EIS-LT-YGLERVWTISSLKGSNNVAIG-YDEGSVLL  190 (381)
Q Consensus       157 ------~~~-~~-~~~~~v~~v~~~~~~~~l~~~-~~dg~v~i  190 (381)
                            ... +. ........++|+|+|+.|..+ +....|+.
T Consensus       294 ~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~k  336 (496)
T 3kya_A          294 KNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMR  336 (496)
T ss_dssp             GGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEE
T ss_pred             cccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEE
Confidence                  112 11 123456789999999854444 45566665

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=95.54  E-value=2.1  Score=42.24  Aligned_cols=124  Identities=10%  Similarity=-0.009  Sum_probs=75.0

Q ss_pred             CeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCC----eEEEEeccCCCCEEEEEEe
Q psy4650          56 SRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNK----TCVQTLEGHGQNISAVCFH  131 (381)
Q Consensus        56 ~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~----~~~~~~~~~~~~v~~~~~~  131 (381)
                      ..|+..++....   ...+......+..++|.+.... ++++-...+.|+.+++...    .....+...-.....|++.
T Consensus       404 ~~Ir~i~l~~~~---~~~l~~~~~~~~gl~~d~~~~~-lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD  479 (791)
T 3m0c_C          404 HEVRKMTLDRSE---YTSLIPNLRNVVALDTEVASNR-IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVD  479 (791)
T ss_dssp             SSEEEECTTSCC---CEEEECSCSSEEEEEEETTTTE-EEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEE
T ss_pred             cceeEeeccCCc---ceeeecCCCceEEEeecccCCe-eEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeee
Confidence            467777764321   2223334567789999875542 5566667788988888753    2233333233455789999


Q ss_pred             cCCCEEE-EEeCCCCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEe
Q psy4650         132 PELPIVI-TGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGY  183 (381)
Q Consensus       132 p~~~~l~-s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~  183 (381)
                      +.+..|. +-...+.|.+.++.+......+...-.....|+++|.+..|....
T Consensus       480 ~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD  532 (791)
T 3m0c_C          480 WIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTD  532 (791)
T ss_dssp             TTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEE
T ss_pred             ecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEec
Confidence            8776554 445578999999976554333433445678899998755444443

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=95.25  E-value=0.054  Score=52.84  Aligned_cols=154  Identities=8%  Similarity=-0.094  Sum_probs=76.7

Q ss_pred             ceeeeecCCCceEEEEEecCCeEEEecCCCcc--ceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCe
Q psy4650          36 KVDITTNKDMIEYKISYQESSRVKAFNPIQVA--TLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKT  113 (381)
Q Consensus        36 ~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~--~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~  113 (381)
                      +..+...+....+.++-...+.|+.+++....  ......+.........+++.+.+.. ++++-...+.|.+.+.....
T Consensus       408 p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~-LY~tD~~~~~I~v~d~dg~~  486 (699)
T 1n7d_A          408 VVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSN-IYWTDSVLGTVSVADTKGVK  486 (699)
T ss_dssp             CCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSB-CEECCTTTSCEEEEBSSSCC
T ss_pred             eEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCc-EEEEeccCCeEEEEecCCCc
Confidence            34444444334444444445667777664200  0111111111223456777654442 45555667889999987654


Q ss_pred             EEEEeccCCCCEEEEEEecCCCEEEEEeC--CCCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEE-EEEeCCCeEEE
Q psy4650         114 CVQTLEGHGQNISAVCFHPELPIVITGSE--DGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNV-AIGYDEGSVLL  190 (381)
Q Consensus       114 ~~~~~~~~~~~v~~~~~~p~~~~l~s~~~--d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l-~~~~~dg~v~i  190 (381)
                      ....+.........++++|.+..|+.+..  .+.|..+++............-.....++++|++..| ++-...+.|..
T Consensus       487 ~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~  566 (699)
T 1n7d_A          487 RKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISS  566 (699)
T ss_dssp             EEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEE
T ss_pred             eEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEE
Confidence            43333322234578889987664444332  2678777775432222112222345568888764433 33333444544

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=95.19  E-value=1.5  Score=38.42  Aligned_cols=136  Identities=7%  Similarity=0.032  Sum_probs=83.9

Q ss_pred             CCeEEEecCCCccceeeEeecc------cc-ccEEEEEe--eeCCCccEEEEEcCCCeEEEEECC-------CCeEEEEe
Q psy4650          55 SSRVKAFNPIQVATLILKTLYG------HE-KGVNCVDY--YHGGDKPYLISGADDRLVKIWDYQ-------NKTCVQTL  118 (381)
Q Consensus        55 d~~v~i~~~~~~~~~~~~~l~~------h~-~~v~~~~~--~~~~~~~~l~s~~~d~~v~vwd~~-------~~~~~~~~  118 (381)
                      ++++.+|++.. ....+..+..      .. ..+..+++  +|...+.++.....+|.+..|++.       +.+.++.+
T Consensus        98 ~n~l~vf~iDp-~~~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f  176 (355)
T 3amr_A           98 KNTIEIYAIDG-KNGTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAF  176 (355)
T ss_dssp             CCEEEEEEECT-TTCCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEE
T ss_pred             CCeEEEEEECC-CCCceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEe
Confidence            57999995421 1122444421      11 45666666  554443367777888999999883       23556777


Q ss_pred             ccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCC-----CCeeeEEEec--CCcceEEEEE--cCCCC-EEEEEe-CCCe
Q psy4650         119 EGHGQNISAVCFHPELPIVITGSEDGSVRVWHSG-----THRLEISLTY--GLERVWTISS--LKGSN-NVAIGY-DEGS  187 (381)
Q Consensus       119 ~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~-----~~~~~~~~~~--~~~~v~~v~~--~~~~~-~l~~~~-~dg~  187 (381)
                      .. .+.+..+...+....|..+-++.-|..+|.+     +++.+..+..  -...+..++.  .++++ +|++++ .++.
T Consensus       177 ~l-gsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s  255 (355)
T 3amr_A          177 KM-NSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSS  255 (355)
T ss_dssp             EC-SSCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTE
T ss_pred             cC-CCCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCE
Confidence            64 3567888889988899999998777777755     3444444321  1235777776  45555 454444 6778


Q ss_pred             EEEEe
Q psy4650         188 VLLKV  192 (381)
Q Consensus       188 v~i~~  192 (381)
                      +.++.
T Consensus       256 ~~Vyd  260 (355)
T 3amr_A          256 YAIYD  260 (355)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            88843

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=94.97  E-value=1.6  Score=37.73  Aligned_cols=116  Identities=4%  Similarity=-0.083  Sum_probs=68.1

Q ss_pred             ceeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEE-cCCCeEEEEECCCCeE
Q psy4650          36 KVDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISG-ADDRLVKIWDYQNKTC  114 (381)
Q Consensus        36 ~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~-~~d~~v~vwd~~~~~~  114 (381)
                      +..+........+.++-...+.|.++++.......+  +.........+++.|.+.. ++.+- +..+.|...+......
T Consensus        81 p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l--~~~~~~~P~giavdp~~g~-ly~td~~~~~~I~r~~~dG~~~  157 (318)
T 3sov_A           81 PDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVL--FWQELDQPRAIALDPSSGF-MYWTDWGEVPKIERAGMDGSSR  157 (318)
T ss_dssp             CCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE--ECSSCSSEEEEEEEGGGTE-EEEEECSSSCEEEEEETTSCSC
T ss_pred             ccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEE--EeCCCCCccEEEEeCCCCE-EEEEecCCCCEEEEEEcCCCCe
Confidence            344555544455555656667888888753222211  2233456788999886542 33333 2357888888764332


Q ss_pred             EEEeccCCCCEEEEEEecCCCEEEEE-eCCCCEEEEeCCCC
Q psy4650         115 VQTLEGHGQNISAVCFHPELPIVITG-SEDGSVRVWHSGTH  154 (381)
Q Consensus       115 ~~~~~~~~~~v~~~~~~p~~~~l~s~-~~d~~i~vwd~~~~  154 (381)
                      ...+...-..-..++++|++..|..+ ...+.|..+|+...
T Consensus       158 ~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~  198 (318)
T 3sov_A          158 FIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGT  198 (318)
T ss_dssp             EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             EEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCC
Confidence            22222223345899999977766555 44678999998753

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=94.65  E-value=0.44  Score=46.00  Aligned_cols=146  Identities=10%  Similarity=0.084  Sum_probs=79.7

Q ss_pred             eEEEecCCCccceeeEeecc-ccccEEEEEeeeCCCccEEEEEc-CCCeEEEEECCCCeEEEEeccCCC-CEEEEEEecC
Q psy4650          57 RVKAFNPIQVATLILKTLYG-HEKGVNCVDYYHGGDKPYLISGA-DDRLVKIWDYQNKTCVQTLEGHGQ-NISAVCFHPE  133 (381)
Q Consensus        57 ~v~i~~~~~~~~~~~~~l~~-h~~~v~~~~~~~~~~~~~l~s~~-~d~~v~vwd~~~~~~~~~~~~~~~-~v~~~~~~p~  133 (381)
                      .+.+||+....-..+..+.. +.....++++.+++.  +++.|+ .+..+.+||..+..-...-.-+.. .-.++...++
T Consensus       220 ~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~--lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~d  297 (656)
T 1k3i_A          220 LTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQ--IVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSD  297 (656)
T ss_dssp             EEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSC--EEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTT
T ss_pred             EEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCC--EEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEecC
Confidence            57899987644333333322 333344566666665  677777 456899999987753322111111 1144556678


Q ss_pred             CCEEEEEe-CC-----CCEEEEeCCCCeeeEEE-----ecCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCceEEEe
Q psy4650         134 LPIVITGS-ED-----GSVRVWHSGTHRLEISL-----TYGLERVWTISSLKGSNNVAIGYDEGSVLLKVGREEPAVSMD  202 (381)
Q Consensus       134 ~~~l~s~~-~d-----~~i~vwd~~~~~~~~~~-----~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~~~~~~~~~~d  202 (381)
                      ++.++.|| .+     ..+.+||..+.+....-     ...... ....+..++...+.|+.+|.+.. .+....+..||
T Consensus       298 g~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~-~~~~~~~~~~iyv~Gg~~g~~~~-~~~~~~v~~yd  375 (656)
T 1k3i_A          298 GRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTAD-KQGLYRSDNHAWLFGWKKGSVFQ-AGPSTAMNWYY  375 (656)
T ss_dssp             SCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCC-TTGGGTTTCSCCEEECGGGCEEE-CCSSSEEEEEE
T ss_pred             CeEEEEeCcccCCcccccceEeCCCCCcceeCCCcccccccccc-ccceeecCCceEEEECCCCcEEE-ecCccceeeee
Confidence            99888888 34     57999999887644320     000000 00122345666666766666543 22233444566


Q ss_pred             cCCC
Q psy4650         203 VNGC  206 (381)
Q Consensus       203 ~~~~  206 (381)
                      ..+.
T Consensus       376 ~~~~  379 (656)
T 1k3i_A          376 TSGS  379 (656)
T ss_dssp             CSTT
T ss_pred             cCCc
Confidence            6544

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=94.43  E-value=2.1  Score=36.57  Aligned_cols=150  Identities=9%  Similarity=-0.078  Sum_probs=75.9

Q ss_pred             cceeeeecCCCceEEEEEecCC-eEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCe
Q psy4650          35 TKVDITTNKDMIEYKISYQESS-RVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKT  113 (381)
Q Consensus        35 ~~~~i~~~~~~~~~~~s~~~d~-~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~  113 (381)
                      .+..+...+++.-|++..+.++ .+..+++.......+..+. .......++..+++.  .+++...++.|..+|..++.
T Consensus        73 ~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~-~~~~~~g~~~~~~~~--~~v~d~~~g~i~~~d~~~~~  149 (306)
T 2p4o_A           73 KVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLP-DAIFLNGITPLSDTQ--YLTADSYRGAIWLIDVVQPS  149 (306)
T ss_dssp             EEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECT-TCSCEEEEEESSSSE--EEEEETTTTEEEEEETTTTE
T ss_pred             CceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeCC-CccccCcccccCCCc--EEEEECCCCeEEEEeCCCCc
Confidence            4666777776554443333333 4666665432222222221 122334444444332  45565668899888987653


Q ss_pred             E-EEEec---------cCCCCEEEEEEecCCCEEEEE-eCCCCEEEEeCCC-Cee--eEEEecCCcceEEEEEcCCCCEE
Q psy4650         114 C-VQTLE---------GHGQNISAVCFHPELPIVITG-SEDGSVRVWHSGT-HRL--EISLTYGLERVWTISSLKGSNNV  179 (381)
Q Consensus       114 ~-~~~~~---------~~~~~v~~~~~~p~~~~l~s~-~~d~~i~vwd~~~-~~~--~~~~~~~~~~v~~v~~~~~~~~l  179 (381)
                      . +....         +.-.....+  +|++..+..+ ...+.|..+|+.. +..  ...+.. ......++++++|++.
T Consensus       150 ~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~vd~dG~l~  226 (306)
T 2p4o_A          150 GSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAFDVEGNLY  226 (306)
T ss_dssp             EEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEEBTTCCEE
T ss_pred             EeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEec-cCCCCCeEECCCCCEE
Confidence            1 21111         111233455  7888755544 4578899999874 332  111111 1233456667777655


Q ss_pred             EEEeCCCeEEE
Q psy4650         180 AIGYDEGSVLL  190 (381)
Q Consensus       180 ~~~~~dg~v~i  190 (381)
                      ++....+.|..
T Consensus       227 va~~~~~~V~~  237 (306)
T 2p4o_A          227 GATHIYNSVVR  237 (306)
T ss_dssp             EECBTTCCEEE
T ss_pred             EEeCCCCeEEE
Confidence            55554555555

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=94.41  E-value=2.1  Score=36.53  Aligned_cols=108  Identities=13%  Similarity=0.098  Sum_probs=64.7

Q ss_pred             ccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEEEeccCCCCEEEEEEecCCCEEEEEeCC-C-CEEEEeCCCCee
Q psy4650          79 KGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPIVITGSED-G-SVRVWHSGTHRL  156 (381)
Q Consensus        79 ~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d-~-~i~vwd~~~~~~  156 (381)
                      ....+++|++++.  ++++...++.|..||..... ...+. .......+++.+++.++++.... + .|..+|..+++.
T Consensus        32 ~~pegia~~~~g~--lyv~d~~~~~I~~~d~~g~~-~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~  107 (306)
T 2p4o_A           32 TFLENLASAPDGT--IFVTNHEVGEIVSITPDGNQ-QIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTV  107 (306)
T ss_dssp             CCEEEEEECTTSC--EEEEETTTTEEEEECTTCCE-EEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCE
T ss_pred             CCcceEEECCCCC--EEEEeCCCCeEEEECCCCce-EEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeE
Confidence            4577899988765  67777788999999987543 33332 23467899999999966655433 2 466677777765


Q ss_pred             eEEEec-CCcceEEEEEcCCCCEEEEEeCCCeEEE
Q psy4650         157 EISLTY-GLERVWTISSLKGSNNVAIGYDEGSVLL  190 (381)
Q Consensus       157 ~~~~~~-~~~~v~~v~~~~~~~~l~~~~~dg~v~i  190 (381)
                      ...... .......++..+++..+++...+|.+..
T Consensus       108 ~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~  142 (306)
T 2p4o_A          108 ETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWL  142 (306)
T ss_dssp             EEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEE
T ss_pred             EEEEeCCCccccCcccccCCCcEEEEECCCCeEEE
Confidence            432221 1122334444444444444334555555

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=94.40  E-value=4.2  Score=39.97  Aligned_cols=144  Identities=10%  Similarity=-0.038  Sum_probs=86.1

Q ss_pred             ceeeeecCCCceEEEEEecCCeEEEecCCCccceeeEee----ccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCC
Q psy4650          36 KVDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTL----YGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQN  111 (381)
Q Consensus        36 ~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l----~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~  111 (381)
                      .+++...+++.  +-.|..++.+..|++...   ....+    ......|.++...+++.   |..|..++-+..++..+
T Consensus       365 v~~i~~d~~g~--lWigt~~~Gl~~~~~~~~---~~~~~~~~~~~~~~~v~~i~~d~~g~---lWigt~~~Gl~~~~~~~  436 (781)
T 3v9f_A          365 VSSVCDDGQGK--LWIGTDGGGINVFENGKR---VAIYNKENRELLSNSVLCSLKDSEGN---LWFGTYLGNISYYNTRL  436 (781)
T ss_dssp             EEEEEECTTSC--EEEEEBSSCEEEEETTEE---EEECC-----CCCSBEEEEEECTTSC---EEEEETTEEEEEECSSS
T ss_pred             eEEEEEcCCCC--EEEEeCCCcEEEEECCCC---eEEEccCCCCCCCcceEEEEECCCCC---EEEEeccCCEEEEcCCC
Confidence            34555554433  333444556888887531   11111    12346788888766554   55567667788888877


Q ss_pred             CeEEEEec--cCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEecC-----CcceEEEEEcCCCCEEEEEeC
Q psy4650         112 KTCVQTLE--GHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYG-----LERVWTISSLKGSNNVAIGYD  184 (381)
Q Consensus       112 ~~~~~~~~--~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~-----~~~v~~v~~~~~~~~l~~~~~  184 (381)
                      ++......  .....|.++...+++.+.+.. . +-+..||..+++........     ...|.++...++|.+.+....
T Consensus       437 ~~~~~~~~~~~~~~~v~~i~~d~~g~lwigt-~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~  514 (781)
T 3v9f_A          437 KKFQIIELEKNELLDVRVFYEDKNKKIWIGT-H-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFG  514 (781)
T ss_dssp             CEEEECCSTTTCCCCEEEEEECTTSEEEEEE-T-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESS
T ss_pred             CcEEEeccCCCCCCeEEEEEECCCCCEEEEE-C-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcC
Confidence            76433221  134578898888777655544 4 45888998877654333222     357889998888876554444


Q ss_pred             CCeEE
Q psy4650         185 EGSVL  189 (381)
Q Consensus       185 dg~v~  189 (381)
                      .|..+
T Consensus       515 ~Gl~~  519 (781)
T 3v9f_A          515 GGVGI  519 (781)
T ss_dssp             SCEEE
T ss_pred             CCEEE
Confidence            56444

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=94.12  E-value=4.9  Score=39.61  Aligned_cols=145  Identities=11%  Similarity=0.024  Sum_probs=89.2

Q ss_pred             ceeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeec-c--------ccccEEEEEeeeCCCccEEEEEcCCCeEEE
Q psy4650          36 KVDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLY-G--------HEKGVNCVDYYHGGDKPYLISGADDRLVKI  106 (381)
Q Consensus        36 ~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~-~--------h~~~v~~~~~~~~~~~~~l~s~~~d~~v~v  106 (381)
                      ..++..++++.  +-.|..++.+..|++....   ...+. .        ....|.++...+++.  .|..|..++-+..
T Consensus       359 V~~i~~d~~g~--lWiGt~~~Gl~~~~~~~~~---~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~--~lWigt~~~Gl~~  431 (795)
T 4a2l_A          359 VSCIVEDKDKN--LWIGTNDGGLNLYNPITQR---FTSYTLQEDESARGIGSNNIKAVYVDEKKS--LVYIGTHAGGLSI  431 (795)
T ss_dssp             EEEEEECTTSC--EEEEESSSCEEEECTTTCC---EEEECCC------CCSCSCEEEEEEETTTT--EEEEEETTTEEEE
T ss_pred             eEEEEECCCCC--EEEEECCCCeEEEcCCCCc---EEEEecCCCCcccCCCCccEEEEEEcCCCC--EEEEEeCcCceeE
Confidence            34555555433  3345666678889875321   12221 1        135688888766543  3667777777999


Q ss_pred             EECCCCeEEEEec----cCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEec------CCcceEEEEEcCCC
Q psy4650         107 WDYQNKTCVQTLE----GHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTY------GLERVWTISSLKGS  176 (381)
Q Consensus       107 wd~~~~~~~~~~~----~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~------~~~~v~~v~~~~~~  176 (381)
                      +|..++.......    .+...|.++...++|.+++... + -+.+||..+++.......      ....|.++...++|
T Consensus       432 ~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~-~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g  509 (795)
T 4a2l_A          432 LHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGTL-S-ALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHK  509 (795)
T ss_dssp             EETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEES-S-CEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTC
T ss_pred             EeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEec-C-ceeEEeCCCCeEEEccccccccccCCceEEEEEECCCC
Confidence            9988876433221    1345789998888887666554 4 488899887765332211      23568899888888


Q ss_pred             CEEEEEeCCCeEEE
Q psy4650         177 NNVAIGYDEGSVLL  190 (381)
Q Consensus       177 ~~l~~~~~dg~v~i  190 (381)
                      ...+... .|..++
T Consensus       510 ~lWigt~-~Gl~~~  522 (795)
T 4a2l_A          510 RLWIGGE-EGLSVF  522 (795)
T ss_dssp             CEEEEES-SCEEEE
T ss_pred             CEEEEeC-CceEEE
Confidence            7655444 564443

>1jce_A ROD shape-determining protein MREB; MBL, actin, HSP-70, FTSZ, structural protein; 2.10A {Thermotoga maritima} SCOP: c.55.1.1 c.55.1.1 PDB: 1jcf_A 1jcg_A* 2wus_A

Probab=93.99  E-value=0.058  Score=47.60  Aligned_cols=63  Identities=10%  Similarity=0.150  Sum_probs=47.6

Q ss_pred             hhhhhhHhhhccccc------eeeEee--ccccCcceEEeecHHHHHHHHHHHHHHhHHHHHHHHHhCCCC
Q psy4650         310 SFVQPCMHVLSTLQS------SNVFVE--SLYDGLDFHHNVSRARFESLIGGLLTSFVQPIEDVLSRSNIT  372 (381)
Q Consensus       310 ~~~~~~~~~Ls~~~~------~~~~~~--~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~l~~~~~~  372 (381)
                      ..++.+|+.|+....      ..+.++  ++.++..+...++|++|++++++++.++.+.++++|++++.+
T Consensus       201 ~~ae~~K~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~  271 (344)
T 1jce_A          201 RTAERVKIEIGNVFPSKENDELETTVSGIDLSTGLPRKLTLKGGEVREALRSVVVAIVESVRTTLEKTPPE  271 (344)
T ss_dssp             HHHHHHHHHHCBCSCCHHHHHCEEEEEEEETTTTEEEEEEEEHHHHHHHTHHHHHHHHHHHHHHHHTSCHH
T ss_pred             HHHHHHHHHHhccCccccCCcceEEEeccccCCCCceeEEEeHHHHHHHHHHHHHHHHHHHHHHHHhCCch
Confidence            346777877776432      234443  344566677899999999999999999999999999998743

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=93.87  E-value=0.34  Score=47.24  Aligned_cols=115  Identities=8%  Similarity=-0.134  Sum_probs=61.8

Q ss_pred             ceeeeecCCCceEEEEEecCCeEEEecCCCccceeeEee-ccccccEEEEEeeeCCCccEEEEEcC-CCeEEEEECCCCe
Q psy4650          36 KVDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTL-YGHEKGVNCVDYYHGGDKPYLISGAD-DRLVKIWDYQNKT  113 (381)
Q Consensus        36 ~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l-~~h~~~v~~~~~~~~~~~~~l~s~~~-d~~v~vwd~~~~~  113 (381)
                      |..+........+.++-...+.|.++++...   ....+ .........+++.|.+.. ++++-.. .+.|..+++....
T Consensus       455 P~glavD~~~g~LY~tD~~~~~I~v~d~dg~---~~~~l~~~~~~~P~giavDp~~g~-ly~td~~~~~~I~~~~~dG~~  530 (699)
T 1n7d_A          455 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGV---KRKTLFREQGSKPRAIVVDPVHGF-MYWTDWGTPAKIKKGGLNGVD  530 (699)
T ss_dssp             CCCEECCCSSSBCEECCTTTSCEEEEBSSSC---CEEEECCCSSCCCCCEECCSSSSC-CEECCCSSSCCEEBCCSSSCC
T ss_pred             cceEEEEeeCCcEEEEeccCCeEEEEecCCC---ceEEEEeCCCCCcceEEEccCCCc-EEEcccCCCCeEEEEeCCCCC
Confidence            3344444333444455555678888887532   12222 222234567788875542 3333322 3677777665432


Q ss_pred             EEEEeccCCCCEEEEEEecCCCEEE-EEeCCCCEEEEeCCCC
Q psy4650         114 CVQTLEGHGQNISAVCFHPELPIVI-TGSEDGSVRVWHSGTH  154 (381)
Q Consensus       114 ~~~~~~~~~~~v~~~~~~p~~~~l~-s~~~d~~i~vwd~~~~  154 (381)
                      ....+...-.....|+|+|++..|. +-...+.|..+|+.+.
T Consensus       531 ~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~  572 (699)
T 1n7d_A          531 IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG  572 (699)
T ss_dssp             CCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSS
T ss_pred             eeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCC
Confidence            2222222223447899999766444 4445678999998653

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=93.79  E-value=4.1  Score=40.03  Aligned_cols=143  Identities=10%  Similarity=0.014  Sum_probs=83.0

Q ss_pred             ceeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeec---cccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCC
Q psy4650          36 KVDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLY---GHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNK  112 (381)
Q Consensus        36 ~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~---~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~  112 (381)
                      .+++....++.  +..|..++.+..|++...   ....+.   -....|.++...+++.   |..|.. +-+..+|..++
T Consensus       409 v~~i~~d~~g~--lWigt~~~Gl~~~~~~~~---~~~~~~~~~~~~~~v~~i~~d~~g~---lwigt~-~Gl~~~~~~~~  479 (781)
T 3v9f_A          409 VLCSLKDSEGN--LWFGTYLGNISYYNTRLK---KFQIIELEKNELLDVRVFYEDKNKK---IWIGTH-AGVFVIDLASK  479 (781)
T ss_dssp             EEEEEECTTSC--EEEEETTEEEEEECSSSC---EEEECCSTTTCCCCEEEEEECTTSE---EEEEET-TEEEEEESSSS
T ss_pred             eEEEEECCCCC--EEEEeccCCEEEEcCCCC---cEEEeccCCCCCCeEEEEEECCCCC---EEEEEC-CceEEEeCCCC
Confidence            34555554433  333555567888887532   122222   1346788887765543   444555 55788898776


Q ss_pred             eEEEEeccC-----CCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEec----CCcceEEEEEcCCCCEEEEEe
Q psy4650         113 TCVQTLEGH-----GQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTY----GLERVWTISSLKGSNNVAIGY  183 (381)
Q Consensus       113 ~~~~~~~~~-----~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~----~~~~v~~v~~~~~~~~l~~~~  183 (381)
                      .........     ...|.++...++|.+.+.....| +..||..+++... +..    ....|.++...++|.+.++ +
T Consensus       480 ~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~G-l~~~~~~~~~~~~-~~~~~~l~~~~i~~i~~d~~g~lWi~-T  556 (781)
T 3v9f_A          480 KVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGG-VGIYTPDMQLVRK-FNQYEGFCSNTINQIYRSSKGQMWLA-T  556 (781)
T ss_dssp             SCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSC-EEEECTTCCEEEE-ECTTTTCSCSCEEEEEECTTSCEEEE-E
T ss_pred             eEEecccCcccccccceeEEEEEcCCCCEEEEEcCCC-EEEEeCCCCeEEE-ccCCCCCCCCeeEEEEECCCCCEEEE-E
Confidence            543322211     35789998888888666543344 7778887765432 321    2346888888888875444 3


Q ss_pred             CCCeEEE
Q psy4650         184 DEGSVLL  190 (381)
Q Consensus       184 ~dg~v~i  190 (381)
                      .+|.+..
T Consensus       557 ~~Glv~~  563 (781)
T 3v9f_A          557 GEGLVCF  563 (781)
T ss_dssp             TTEEEEE
T ss_pred             CCCceEE
Confidence            3565344

>2ych_A Competence protein PILM; cell cycle, type IV pilus actin secretion; HET: ATP; 2.20A {Thermus thermophilus}

Probab=93.63  E-value=0.026  Score=50.58  Aligned_cols=93  Identities=18%  Similarity=0.032  Sum_probs=54.5

Q ss_pred             HHHhhhhhhccccceeeEEEecccCCcccccccChHHHHHHHHHHhhhhhhhhHhhhccccceeeEeeccccCcceEEee
Q psy4650         263 AAAETCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIGGLLTSFVQPCMHVLSTLQSSNVFVESLYDGLDFHHNV  342 (381)
Q Consensus       263 ~~~e~ak~~lS~~~~~~i~~~~l~~g~~~~~~itr~~fe~l~~~l~~~~~~~~~~~Ls~~~~~~~~~~~~~~~~~~~~~~  342 (381)
                      ..+|++|+.++............++.......++|++|++++.+.+.++.+.+++.|.... +...-..+...++.||..
T Consensus       239 ~~aE~~K~~~~~~~~~~~~~~~~i~~~~~~~~i~~~~~~~~i~~~~~~i~~~i~~~l~~~~-~~~~~~~~~~IvL~GG~s  317 (377)
T 2ych_A          239 LAAEEVKRTYGMATLPTEDEELLLDFDAERERYSPGRIYDAIRPVLVELTQELRRSLEFFR-IQLEEASPEVGYLLGGGS  317 (377)
T ss_dssp             HHHHHHHHHTC-------------------------CHHHHHHHHHHHHHHHHHHHHHHHH-HHC---CCSEEEEESGGG
T ss_pred             HHHHHHHhhcccccccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCCCCcCEEEEECccc
Confidence            4678888877754322111111111111345789999999999999999999999997532 122333456778889999


Q ss_pred             cHHHHHHHHHHHHH
Q psy4650         343 SRARFESLIGGLLT  356 (381)
Q Consensus       343 ~~~~~e~~~~~~~~  356 (381)
                      ..|.+.+++++.|+
T Consensus       318 ~~p~l~~~l~~~l~  331 (377)
T 2ych_A          318 KLRGLASLLTDTLG  331 (377)
T ss_dssp             GSTTHHHHHHHHHT
T ss_pred             cchhHHHHHHHHhC
Confidence            99999999999997

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=93.46  E-value=5.5  Score=38.02  Aligned_cols=146  Identities=5%  Similarity=-0.109  Sum_probs=84.7

Q ss_pred             cceeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeE
Q psy4650          35 TKVDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTC  114 (381)
Q Consensus        35 ~~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~  114 (381)
                      .+..+........+.++-...+.|..+++.... .....+..-......+++.+.+.. ++.+-...+.|.+.+......
T Consensus        41 ~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~-~~~~v~~~~~~~P~GlAvD~~~~~-ly~~d~~~~~I~v~~~dG~~~  118 (619)
T 3s94_A           41 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTE-SVQNVVVSGLLSPDGLACDWLGEK-LYWTDSETNRIEVSNLDGSLR  118 (619)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEEC------CEEEECSSCSCEEEEEEETTTTE-EEEEETTTTEEEEEETTSCSC
T ss_pred             ceEEEEEEeCCCEEEEEECCCCeEEEEEccCCC-ceEEEEeCCCCCcCeEEEEecCCE-EEEEeCCCCEEEEEECCCCCE
Confidence            356666666555556666666788888775321 111222222356788999875552 566667789999999876543


Q ss_pred             EEEeccCCCCEEEEEEecCCCEEEEEeC--CCCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEE
Q psy4650         115 VQTLEGHGQNISAVCFHPELPIVITGSE--DGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIG  182 (381)
Q Consensus       115 ~~~~~~~~~~v~~~~~~p~~~~l~s~~~--d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~  182 (381)
                      ...+...-.....+++.|.+..|..+..  .+.|...++.+..........-.....+++++.+..|..+
T Consensus       119 ~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Glald~~~~~LY~a  188 (619)
T 3s94_A          119 KVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWA  188 (619)
T ss_dssp             EEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEE
T ss_pred             EEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcEEEEEccCCEEEEE
Confidence            3333233344588999997665555543  3566666665433322222233456778888765544433

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=93.38  E-value=0.74  Score=44.41  Aligned_cols=121  Identities=15%  Similarity=0.178  Sum_probs=68.7

Q ss_pred             EEEeee-CCCccEEEEEcCCC-----------eEEEEECCCCeE--EEEecc-CCCCEEEEEEecCCCEEEEEeC-CCCE
Q psy4650          83 CVDYYH-GGDKPYLISGADDR-----------LVKIWDYQNKTC--VQTLEG-HGQNISAVCFHPELPIVITGSE-DGSV  146 (381)
Q Consensus        83 ~~~~~~-~~~~~~l~s~~~d~-----------~v~vwd~~~~~~--~~~~~~-~~~~v~~~~~~p~~~~l~s~~~-d~~i  146 (381)
                      .+++.| ++.  .++.|+.+.           .+.+||..++.-  +..+.. +.....++++.+++..++.||. +..+
T Consensus       190 ~~av~~~~g~--l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v  267 (656)
T 1k3i_A          190 AAAIEPTSGR--VLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKT  267 (656)
T ss_dssp             EEEEETTTTE--EEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCE
T ss_pred             eEEEEecCCE--EEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCce
Confidence            445555 333  666665432           578899887752  222222 2223345677889998888884 5689


Q ss_pred             EEEeCCCCeeeEEEecCCcce-EEEEEcCCCCEEEEEe-CCCeEEEEecCCCceEEEecCCCEEEEEe
Q psy4650         147 RVWHSGTHRLEISLTYGLERV-WTISSLKGSNNVAIGY-DEGSVLLKVGREEPAVSMDVNGCKIIWAR  212 (381)
Q Consensus       147 ~vwd~~~~~~~~~~~~~~~~v-~~v~~~~~~~~l~~~~-~dg~v~i~~~~~~~~~~~d~~~~~~~~~~  212 (381)
                      .+||..+.+....-.....+. .+++..++|++++.|+ .++.-     ....+..||+.++.  |..
T Consensus       268 ~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~-----~~~~~e~yd~~t~~--W~~  328 (656)
T 1k3i_A          268 SLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGV-----FEKNGEVYSPSSKT--WTS  328 (656)
T ss_dssp             EEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSS-----CCCCEEEEETTTTE--EEE
T ss_pred             EEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCc-----ccccceEeCCCCCc--cee
Confidence            999998776443221111111 2344556777777776 33211     11334458887765  554

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=91.96  E-value=6.9  Score=35.39  Aligned_cols=133  Identities=9%  Similarity=0.082  Sum_probs=82.6

Q ss_pred             CCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCc-cEEEEEcC---CCeEEEEECCCC---e------EEEEec--
Q psy4650          55 SSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDK-PYLISGAD---DRLVKIWDYQNK---T------CVQTLE--  119 (381)
Q Consensus        55 d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~-~~l~s~~~---d~~v~vwd~~~~---~------~~~~~~--  119 (381)
                      .|.+.+|..+   ....+.+.||.+....+...-+... .+++-+..   .+.+++.++...   .      ....+.  
T Consensus       178 ~G~mQLYS~e---r~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fpp  254 (494)
T 1bpo_A          178 VGAMQLYSVD---RKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPP  254 (494)
T ss_dssp             EEEEEEEEST---TCCEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCT
T ss_pred             cceEEEeecc---ccccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCc
Confidence            3678888875   4455677899777665554321111 13443433   278888887432   1      111111  


Q ss_pred             -cCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCCCeEEE
Q psy4650         120 -GHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLL  190 (381)
Q Consensus       120 -~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i  190 (381)
                       ...+--.++..++.-..+..-..-|.+.++|+.+|.++..-+-..+.|...+.+....-+.+-...|.|.-
T Consensus       255 e~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqVl~  326 (494)
T 1bpo_A          255 EAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLS  326 (494)
T ss_dssp             TSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTCEEEE
T ss_pred             ccccCceeEEEecccCCEEEEEecCceEEEEecccceeeeeecccCCceEEecccCCCCcEEEEccCceEEE
Confidence             11234567888888888888888999999999999999887766677666555554444444445555544

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=91.81  E-value=6.2  Score=34.52  Aligned_cols=100  Identities=13%  Similarity=0.101  Sum_probs=57.9

Q ss_pred             cccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeE--EEEec---cCCCCEEEEEEecC---CCEEEEE-eCC-----
Q psy4650          78 EKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTC--VQTLE---GHGQNISAVCFHPE---LPIVITG-SED-----  143 (381)
Q Consensus        78 ~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~--~~~~~---~~~~~v~~~~~~p~---~~~l~s~-~~d-----  143 (381)
                      -..-..++|.|++.  ++++ ..++.|.+++  .+..  +..+.   ........++++|+   +..|..+ ...     
T Consensus        30 l~~P~~ia~~pdG~--l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~  104 (352)
T 2ism_A           30 LEVPWALAFLPDGG--MLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLR  104 (352)
T ss_dssp             CSCEEEEEECTTSC--EEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSE
T ss_pred             CCCceEEEEcCCCe--EEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCc
Confidence            34567899999886  4444 5569999988  4432  22221   12346789999998   4444333 222     


Q ss_pred             CCEEEEeCCCCee-----eE-EEe---cCCcceEEEEEcCCCCEEEEE
Q psy4650         144 GSVRVWHSGTHRL-----EI-SLT---YGLERVWTISSLKGSNNVAIG  182 (381)
Q Consensus       144 ~~i~vwd~~~~~~-----~~-~~~---~~~~~v~~v~~~~~~~~l~~~  182 (381)
                      +.|..|+...+..     +. .+.   ........++|.|+|.+.++.
T Consensus       105 ~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~  152 (352)
T 2ism_A          105 NQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTT  152 (352)
T ss_dssp             EEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEEC
T ss_pred             cEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEE
Confidence            5677888765421     11 132   111233578888888655553

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=91.70  E-value=1.2  Score=38.93  Aligned_cols=111  Identities=14%  Similarity=0.044  Sum_probs=69.7

Q ss_pred             EEEEEcCCCeEEEEECCCCeEEEEeccC-CCCEEEEEEe--cCCCEEEEE--eCCCCEEEEeCCCCeeeEEEecC----C
Q psy4650          94 YLISGADDRLVKIWDYQNKTCVQTLEGH-GQNISAVCFH--PELPIVITG--SEDGSVRVWHSGTHRLEISLTYG----L  164 (381)
Q Consensus        94 ~l~s~~~d~~v~vwd~~~~~~~~~~~~~-~~~v~~~~~~--p~~~~l~s~--~~d~~i~vwd~~~~~~~~~~~~~----~  164 (381)
                      .++.++.||.|.-.|..+|+.+..++.. ..++....-.  +.+..+..+  ..||.+.-+|..+|.....+...    .
T Consensus        12 ~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~~   91 (339)
T 2be1_A           12 ILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVST   91 (339)
T ss_dssp             EEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHTT
T ss_pred             EEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccceec
Confidence            6888999999999999999999988754 1222221100  112233333  57999999999888665544321    1


Q ss_pred             cceEEEE----E-c----CCCCEEEEEeCCCeEEEEecCCCceEEEecCCCEEEEEecCc
Q psy4650         165 ERVWTIS----S-L----KGSNNVAIGYDEGSVLLKVGREEPAVSMDVNGCKIIWARHSE  215 (381)
Q Consensus       165 ~~v~~v~----~-~----~~~~~l~~~~~dg~v~i~~~~~~~~~~~d~~~~~~~~~~~~~  215 (381)
                      .++.. .    . .    ..+..+.+|+.+|.+..          .|..+|+.+|.....
T Consensus        92 SP~~~-~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~a----------ld~~tG~~~W~~~~~  140 (339)
T 2be1_A           92 SPLHL-KTNIVVNDSGKIVEDEKVYTGSMRTIMYT----------INMLNGEIISAFGPG  140 (339)
T ss_dssp             CSEEE-ECC----------CCEEEEECEEEEEEEE----------EETTTCCEEEEESTT
T ss_pred             ccccc-CCCceeecccccccCCEEEEEecCCEEEE----------EECCCCcEEEEEecC
Confidence            11111 0    0 0    02345566666666666          999999999998654

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=91.09  E-value=11  Score=36.02  Aligned_cols=144  Identities=4%  Similarity=-0.138  Sum_probs=86.2

Q ss_pred             cceeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeE
Q psy4650          35 TKVDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTC  114 (381)
Q Consensus        35 ~~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~  114 (381)
                      .+..+..++....+.++-..++.|..+++......  ..+.........+++.+.+.. +..+-...+.|.+.++.....
T Consensus        38 ~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~--~v~~~g~~~P~GlAvD~~~~~-LY~tD~~~~~I~v~~~dG~~~  114 (628)
T 4a0p_A           38 EASALDFDVTDNRIYWTDISLKTISRAFMNGSALE--HVVEFGLDYPEGMAVDWLGKN-LYWADTGTNRIEVSKLDGQHR  114 (628)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE--EEECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSTTC
T ss_pred             ceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcE--EEEeCCCCCcceEEEEeCCCE-EEEEECCCCEEEEEecCCCcE
Confidence            45667777665666666667788888887532111  122222245667887765442 556667788999999876543


Q ss_pred             EEEeccCCCCEEEEEEecCCCEEEEEeC--CCCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEE
Q psy4650         115 VQTLEGHGQNISAVCFHPELPIVITGSE--DGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIG  182 (381)
Q Consensus       115 ~~~~~~~~~~v~~~~~~p~~~~l~s~~~--d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~  182 (381)
                      ...+...-.....++++|....|....+  .+.|...++.+.... .+...-.....+++++.+..|..+
T Consensus       115 ~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~-~l~~~~~~P~GlalD~~~~~LY~a  183 (628)
T 4a0p_A          115 QVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERT-TLVPNVGRANGLTIDYAKRRLYWT  183 (628)
T ss_dssp             EEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE-EEECSCSSEEEEEEETTTTEEEEE
T ss_pred             EEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceE-EEECCCCCcceEEEccccCEEEEE
Confidence            3333233345689999997665555543  456777777654332 222234556778888765544443

>4a2a_A Cell division protein FTSA, putative; cell cycle, actin, divisome; HET: ATP; 1.80A {Thermotoga maritima} PDB: 1e4g_T* 1e4f_T* 4a2b_A*

Probab=90.80  E-value=0.53  Score=42.61  Aligned_cols=70  Identities=4%  Similarity=0.013  Sum_probs=51.3

Q ss_pred             hhhhhhhHhhhccc-----cceeeEeeccccCcceEEeecHHHHHHHHHHHHHHhHHHHHHHHHhCCCC------ccccc
Q psy4650         309 TSFVQPCMHVLSTL-----QSSNVFVESLYDGLDFHHNVSRARFESLIGGLLTSFVQPIEDVLSRSNIT------HDQIN  377 (381)
Q Consensus       309 ~~~~~~~~~~Ls~~-----~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~l~~~~~~------~~~i~  377 (381)
                      ...+|.+|+.+..+     ....++++.+.+  .....+++..|++++++.++++++.++++|++++++      ...++
T Consensus       253 ~~~AE~iK~~~g~a~~~~~~~~~i~v~~~~~--~~~~~is~~~l~~ii~p~veei~~~V~~~L~~~~~~~p~~~~~~~~~  330 (419)
T 4a2a_A          253 FEESERLIITHGNAVYNDLKEEEIQYRGLDG--NTIKTTTAKKLSVIIHARLREIMSKSKKFFREVEAKIVEEGEIGIPG  330 (419)
T ss_dssp             HHHHHHHHHHHCCSCCTTCCCCEEEEECTTS--CSEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC--------TT
T ss_pred             HHHHHHHHHHhccCcccCCCCceEEEeecCC--ccceEEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccccccCC
Confidence            34677777776542     234566766543  355789999999999999999999999999999984      45566


Q ss_pred             ccc
Q psy4650         378 KFT  380 (381)
Q Consensus       378 ~v~  380 (381)
                      .|+
T Consensus       331 ~Iv  333 (419)
T 4a2a_A          331 GVV  333 (419)
T ss_dssp             CEE
T ss_pred             EEE
Confidence            664

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=90.66  E-value=2.4  Score=34.47  Aligned_cols=133  Identities=9%  Similarity=-0.033  Sum_probs=73.8

Q ss_pred             eEEEEEecCCeEEEecCCCcccee---eEeeccc--cccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeE------E
Q psy4650          47 EYKISYQESSRVKAFNPIQVATLI---LKTLYGH--EKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTC------V  115 (381)
Q Consensus        47 ~~~~s~~~d~~v~i~~~~~~~~~~---~~~l~~h--~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~------~  115 (381)
                      .+|+....| +++.=.+.......   ..+..|+  =..+..++|+|++.   |... .+|.+.-.+..+...      -
T Consensus         5 ~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~---LYaV-~~G~Ly~~~~~t~~~~~W~~s~   79 (236)
T 1tl2_A            5 SMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGE---LYGV-LNDKIYKGTPPTHDNDNWMGRA   79 (236)
T ss_dssp             CCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSC---EEEE-ETTEEEEESCCCSTTCCHHHHC
T ss_pred             eEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCcc---EEEE-eCCeEEEECCCCCCcccccccc
Confidence            356666666 65555543322111   1111233  24678999999776   4444 677665555433211      1


Q ss_pred             EEec--cCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeee-----EEE--ecCCcceEEEEEcCCCCEEEEEeCCC
Q psy4650         116 QTLE--GHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLE-----ISL--TYGLERVWTISSLKGSNNVAIGYDEG  186 (381)
Q Consensus       116 ~~~~--~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~-----~~~--~~~~~~v~~v~~~~~~~~l~~~~~dg  186 (381)
                      ..+-  +-. .-.++.|.|+|.+.++  .||.|.-++-.+....     .+.  .+.=..+..+.+.|+|.+.++.  ||
T Consensus        80 t~IG~~Gw~-~F~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg  154 (236)
T 1tl2_A           80 KKIGNGGWN-QFQFLFFDPNGYLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQ  154 (236)
T ss_dssp             EEEECSCGG-GCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TT
T ss_pred             cEecccccc-cceEEEECCCCCEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CC
Confidence            1111  111 1378899999987777  4688887776431110     011  1111357899999999988777  66


Q ss_pred             eEE
Q psy4650         187 SVL  189 (381)
Q Consensus       187 ~v~  189 (381)
                      .+.
T Consensus       155 ~ly  157 (236)
T 1tl2_A          155 QFY  157 (236)
T ss_dssp             EEE
T ss_pred             cEE
Confidence            653

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=90.65  E-value=6.4  Score=34.41  Aligned_cols=103  Identities=13%  Similarity=0.036  Sum_probs=57.7

Q ss_pred             hcceeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeec---cccccEEEEEeeeC---CCccEEEEEcCC-----C
Q psy4650          34 ETKVDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLY---GHEKGVNCVDYYHG---GDKPYLISGADD-----R  102 (381)
Q Consensus        34 ~~~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~---~h~~~v~~~~~~~~---~~~~~l~s~~~d-----~  102 (381)
                      ..|..+.+.+++. ++++ ...|.|++++ .. ....+..+.   ........++++|+   +.. +.++-...     .
T Consensus        31 ~~P~~ia~~pdG~-l~V~-e~~g~I~~i~-~g-~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~-lYv~~~~~~~~~~~  105 (352)
T 2ism_A           31 EVPWALAFLPDGG-MLIA-ERPGRIRLFR-EG-RLSTYAELSVYHRGESGLLGLALHPRFPQEPY-VYAYRTVAEGGLRN  105 (352)
T ss_dssp             SCEEEEEECTTSC-EEEE-ETTTEEEEEE-TT-EEEEEEECCCCCSTTCSEEEEEECTTTTTSCE-EEEEEEECTTSSEE
T ss_pred             CCceEEEEcCCCe-EEEE-eCCCeEEEEE-CC-CccEeecceEeecCCCCceeEEECCCCCCCCE-EEEEEecCCCCCcc
Confidence            3577888888754 4444 4558999988 22 222222222   22456889999997   332 33333322     5


Q ss_pred             eEEEEECCCCe-----EE-EEec---cCCCCEEEEEEecCCCEEEEEe
Q psy4650         103 LVKIWDYQNKT-----CV-QTLE---GHGQNISAVCFHPELPIVITGS  141 (381)
Q Consensus       103 ~v~vwd~~~~~-----~~-~~~~---~~~~~v~~~~~~p~~~~l~s~~  141 (381)
                      .|..++...+.     .+ ..+.   +.......++|.|+|.+.++.+
T Consensus       106 ~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G  153 (352)
T 2ism_A          106 QVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTG  153 (352)
T ss_dssp             EEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECC
T ss_pred             EEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEEC
Confidence            67777776431     11 1132   1111236899999997665543

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=90.21  E-value=9  Score=33.60  Aligned_cols=135  Identities=11%  Similarity=0.101  Sum_probs=76.9

Q ss_pred             cCCeEEEecCCCc--cceeeEeecc-----ccccEEEEEeeeC--CCccEEEEEcC--CCeEEEEECCCC--e--EEEEe
Q psy4650          54 ESSRVKAFNPIQV--ATLILKTLYG-----HEKGVNCVDYYHG--GDKPYLISGAD--DRLVKIWDYQNK--T--CVQTL  118 (381)
Q Consensus        54 ~d~~v~i~~~~~~--~~~~~~~l~~-----h~~~v~~~~~~~~--~~~~~l~s~~~--d~~v~vwd~~~~--~--~~~~~  118 (381)
                      .+|.|.++|+.+.  ....+ .+.+     ..-....+.+.++  +...++++-..  +.++.+|++...  .  .+..+
T Consensus        81 ~~G~I~~~d~~~~~~~~~~l-~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~  159 (355)
T 3sre_A           81 KSGKILLMDLNEKEPAVSEL-EIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTI  159 (355)
T ss_dssp             -CCEEEEEETTSSSCCEEEC-EEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEE
T ss_pred             CCCeEEEEecCCCCCceEEE-EccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEecc
Confidence            6889999998642  22222 2222     2346778888774  43334444333  578888877553  2  23344


Q ss_pred             ccCC-CCEEEEEEecCCCEEEEEeC---C------------CCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEE
Q psy4650         119 EGHG-QNISAVCFHPELPIVITGSE---D------------GSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIG  182 (381)
Q Consensus       119 ~~~~-~~v~~~~~~p~~~~l~s~~~---d------------~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~  182 (381)
                      .+.. ...+.+.+.++|...++...   |            ..-.+|.+..++.. .+...-...+.++|+|+++.+..+
T Consensus       160 ~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~~~~-~~~~~l~~pNGia~spDg~~lYva  238 (355)
T 3sre_A          160 RHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVR-VVAEGFDFANGINISPDGKYVYIA  238 (355)
T ss_dssp             CCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTTCCE-EEEEEESSEEEEEECTTSSEEEEE
T ss_pred             ccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECCeEE-EeecCCcccCcceECCCCCEEEEE
Confidence            4322 35688999999987776531   1            22334444334322 222233456889999999877665


Q ss_pred             e-CCCeEEE
Q psy4650         183 Y-DEGSVLL  190 (381)
Q Consensus       183 ~-~dg~v~i  190 (381)
                      . ..+.+..
T Consensus       239 dt~~~~I~~  247 (355)
T 3sre_A          239 ELLAHKIHV  247 (355)
T ss_dssp             EGGGTEEEE
T ss_pred             eCCCCeEEE
Confidence            4 4556665

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=89.47  E-value=12  Score=34.03  Aligned_cols=107  Identities=11%  Similarity=0.147  Sum_probs=58.1

Q ss_pred             hcceeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeecc------ccccEEEEEeeeC---CCccEEEEEcC----
Q psy4650          34 ETKVDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYG------HEKGVNCVDYYHG---GDKPYLISGAD----  100 (381)
Q Consensus        34 ~~~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~------h~~~v~~~~~~~~---~~~~~l~s~~~----  100 (381)
                      ..|..+.+.+++. ++++-...+.|++++........+..+..      ..+....++|+|+   +.. +.++-+.    
T Consensus        27 ~~P~~~a~~pdG~-l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~-lYv~~s~~~~~  104 (454)
T 1cru_A           27 NKPHALLWGPDNQ-IWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPY-IYISGTFKNPK  104 (454)
T ss_dssp             SSEEEEEECTTSC-EEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCE-EEEEEEEECTT
T ss_pred             CCceEEEEcCCCc-EEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCE-EEEEEeccccC
Confidence            4677888888754 66654444578888764322333333321      2467789999985   332 3333221    


Q ss_pred             --------CCeEEEEECCCC-------eEEE-Eecc-CCCCEEEEEEecCCCEEEEEeC
Q psy4650         101 --------DRLVKIWDYQNK-------TCVQ-TLEG-HGQNISAVCFHPELPIVITGSE  142 (381)
Q Consensus       101 --------d~~v~vwd~~~~-------~~~~-~~~~-~~~~v~~~~~~p~~~~l~s~~~  142 (381)
                              ...|.-++...+       +.+. .+.. .......+.|.|+|.+.++.+.
T Consensus       105 ~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd  163 (454)
T 1cru_A          105 STDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD  163 (454)
T ss_dssp             C--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred             CCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence                    124444444321       1111 1221 1124689999999996666543

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=89.20  E-value=8.3  Score=33.74  Aligned_cols=107  Identities=11%  Similarity=0.028  Sum_probs=55.4

Q ss_pred             hcceeeeecCCCceEEEEEecCCeEEEecCCCccceeeEee----ccccccEEEEEeeeC---CCccEEEEEcC------
Q psy4650          34 ETKVDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTL----YGHEKGVNCVDYYHG---GDKPYLISGAD------  100 (381)
Q Consensus        34 ~~~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l----~~h~~~v~~~~~~~~---~~~~~l~s~~~------  100 (381)
                      ..|..+.+.+++..++++ ...|.|++++........+..+    ....+....++++|+   +.. +.++-+.      
T Consensus        18 ~~P~~i~~~pdG~~l~V~-e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~-lYv~~~~~~~~g~   95 (353)
T 2g8s_A           18 DHPWALAFLPDNHGMLIT-LRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRR-IWLSYSEVGDDGK   95 (353)
T ss_dssp             SSEEEEEECSTTCCEEEE-ETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCE-EEEEEEEECSSSC
T ss_pred             CCcEEEEEcCCCCEEEEE-eCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCE-EEEEEeCCCCCCC
Confidence            467888888875424444 4578999998642111111111    122346789999985   332 3333222      


Q ss_pred             -CCeEEEEECCCC----eEEEE----ec---cCCCCEEEEEEecCCCEEEEEeC
Q psy4650         101 -DRLVKIWDYQNK----TCVQT----LE---GHGQNISAVCFHPELPIVITGSE  142 (381)
Q Consensus       101 -d~~v~vwd~~~~----~~~~~----~~---~~~~~v~~~~~~p~~~~l~s~~~  142 (381)
                       ...|..|+....    .....    +.   .....-..+.|.|+|.+.++.+.
T Consensus        96 ~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd  149 (353)
T 2g8s_A           96 AGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGE  149 (353)
T ss_dssp             EEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECC
T ss_pred             ceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECC
Confidence             234555665432    11111    11   00112367999999975555443

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=88.70  E-value=11  Score=32.45  Aligned_cols=108  Identities=9%  Similarity=0.092  Sum_probs=63.9

Q ss_pred             cccccEEEEEeeeCCCccEEEEEcCCCeEEEEEC--CCCeEEEEeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCC
Q psy4650          76 GHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDY--QNKTCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGT  153 (381)
Q Consensus        76 ~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~--~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~  153 (381)
                      ++...+.++.+.|++.  +++.+...+..+-+|-  .+-..+.  ......+..+.+.|++..++ ++.+|.+.+++...
T Consensus       160 ~~~~~~~~~~~~~~~~--~~~~g~~G~~~~S~d~gG~tW~~~~--~~~~~~~~~~~~~~~g~~~~-~~~~G~~~~s~~D~  234 (327)
T 2xbg_A          160 EAIGVMRNLNRSPSGE--YVAVSSRGSFYSTWEPGQTAWEPHN--RTTSRRLHNMGFTPDGRLWM-IVNGGKIAFSDPDN  234 (327)
T ss_dssp             SCCCCEEEEEECTTSC--EEEEETTSSEEEEECTTCSSCEEEE--CCSSSCEEEEEECTTSCEEE-EETTTEEEEEETTE
T ss_pred             CCCcceEEEEEcCCCc--EEEEECCCcEEEEeCCCCCceeECC--CCCCCccceeEECCCCCEEE-EeCCceEEEecCCC
Confidence            4556788999988655  5665544444444442  2222221  23456788999999887654 45577777775333


Q ss_pred             CeeeEEEec----CCcceEEEEEcCCCCEEEEEeCCCeEE
Q psy4650         154 HRLEISLTY----GLERVWTISSLKGSNNVAIGYDEGSVL  189 (381)
Q Consensus       154 ~~~~~~~~~----~~~~v~~v~~~~~~~~l~~~~~dg~v~  189 (381)
                      |..-..+..    ....+.++.+.+++..++++. +|.+.
T Consensus       235 G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i~  273 (327)
T 2xbg_A          235 SENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGALL  273 (327)
T ss_dssp             EEEECCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCEE
T ss_pred             CCeeEeccCCcccCCcceEEEEecCCCEEEEEeC-CCeEE
Confidence            433222221    123578899998877766654 56554

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=88.70  E-value=11  Score=32.91  Aligned_cols=101  Identities=12%  Similarity=-0.008  Sum_probs=57.8

Q ss_pred             cccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCe-EEEEec---cCCCCEEEEEEecC---CCEEE-EEeC---C---
Q psy4650          78 EKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKT-CVQTLE---GHGQNISAVCFHPE---LPIVI-TGSE---D---  143 (381)
Q Consensus        78 ~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~-~~~~~~---~~~~~v~~~~~~p~---~~~l~-s~~~---d---  143 (381)
                      -....+++|.|++.  ++ .+..++.|++++ ..+. .+..+.   ........++++|+   +..|. +-..   +   
T Consensus        28 l~~P~~ia~~pdG~--l~-V~e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~  103 (354)
T 3a9g_A           28 LEVPWSIAPLGGGR--YL-VTERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHI  103 (354)
T ss_dssp             CSCEEEEEEEETTE--EE-EEETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCE
T ss_pred             CCCCeEEEEcCCCe--EE-EEeCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCc
Confidence            34568899999875  44 445569999887 3454 222221   12346789999997   44443 3321   3   


Q ss_pred             -CCEEEEeCCCC--e-----ee-EEEec-CCcceEEEEEcCCCCEEEEE
Q psy4650         144 -GSVRVWHSGTH--R-----LE-ISLTY-GLERVWTISSLKGSNNVAIG  182 (381)
Q Consensus       144 -~~i~vwd~~~~--~-----~~-~~~~~-~~~~v~~v~~~~~~~~l~~~  182 (381)
                       ..|..|+...+  .     .+ ..+.. .......+.|.|+|.+.++.
T Consensus       104 ~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~  152 (354)
T 3a9g_A          104 RNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITT  152 (354)
T ss_dssp             EEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEEC
T ss_pred             ceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEE
Confidence             56777776644  1     11 11221 11234568888888765553

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=88.67  E-value=10  Score=32.04  Aligned_cols=105  Identities=13%  Similarity=0.107  Sum_probs=51.3

Q ss_pred             eEEEEEecC----CeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCC------CeEEEEECCCCeEEE
Q psy4650          47 EYKISYQES----SRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADD------RLVKIWDYQNKTCVQ  116 (381)
Q Consensus        47 ~~~~s~~~d----~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d------~~v~vwd~~~~~~~~  116 (381)
                      .+.+.|+.+    ..+.+||+....-..+..+..-...-.++.+  ++.  .++.|+.+      ..+.+||..+..-..
T Consensus        57 ~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~--iyv~GG~~~~~~~~~~~~~~d~~~~~W~~  132 (306)
T 3ii7_A           57 VVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAA--EGK--IYTSGGSEVGNSALYLFECYDTRTESWHT  132 (306)
T ss_dssp             EEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEE--TTE--EEEECCBBTTBSCCCCEEEEETTTTEEEE
T ss_pred             EEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEE--CCE--EEEECCCCCCCcEeeeEEEEeCCCCceEe
Confidence            344555533    5788888865332333322211111122222  322  56666654      468888988775322


Q ss_pred             E--eccCCCCEEEEEEecCCCEEEEEeC---------CCCEEEEeCCCCeee
Q psy4650         117 T--LEGHGQNISAVCFHPELPIVITGSE---------DGSVRVWHSGTHRLE  157 (381)
Q Consensus       117 ~--~~~~~~~v~~~~~~p~~~~l~s~~~---------d~~i~vwd~~~~~~~  157 (381)
                      .  +........++.  .++..++.|+.         -..+.+||..+.+..
T Consensus       133 ~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~  182 (306)
T 3ii7_A          133 KPSMLTQRCSHGMVE--ANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWT  182 (306)
T ss_dssp             ECCCSSCCBSCEEEE--ETTEEEEECCEESCTTTCEECCCEEEEETTTTEEE
T ss_pred             CCCCcCCcceeEEEE--ECCEEEEECCCCCCCCcccccceEEEeCCCCCeEE
Confidence            2  111111112222  25555555543         345888998877643

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=88.52  E-value=12  Score=32.61  Aligned_cols=113  Identities=11%  Similarity=-0.055  Sum_probs=67.7

Q ss_pred             ceEEEEEecCCeEEEecCCCccceeeEeeccc-cccEEEEEee--eCCCccEEEEE-cCCCeEEEEECCCCeEEEEecc-
Q psy4650          46 IEYKISYQESSRVKAFNPIQVATLILKTLYGH-EKGVNCVDYY--HGGDKPYLISG-ADDRLVKIWDYQNKTCVQTLEG-  120 (381)
Q Consensus        46 ~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h-~~~v~~~~~~--~~~~~~~l~s~-~~d~~v~vwd~~~~~~~~~~~~-  120 (381)
                      ...++.++.||.+.-+|..+  ...+.+++.. ..++....-.  +.+.. .++.. ..||.+..++..+|.....+.. 
T Consensus        10 ~~~V~v~t~dG~l~Ald~~t--G~~~W~~~~~~~~p~~~~~~~~~~~~~~-~~vv~p~~dG~l~a~~~~~G~~~~~~~~~   86 (339)
T 2be1_A           10 SDILIAADVEGGLHAVDRRN--GHIIWSIEPENFQPLIEIQEPSRLETYE-TLIIEPFGDGNIYYFNAHQGLQKLPLSIR   86 (339)
T ss_dssp             EEEEEEEETTSCEEEEETTT--TEEEEEECGGGSCCSEECCCSCTTTSSE-EEEECCSTTTEEEEEETTTEEEEEEEEHH
T ss_pred             CCEEEEEeCCCeEEEEECCC--CcEEEEecCCccCCcEEecCCccccCCc-EEEEEECCCCEEEEEECCCCcEEeeeccc
Confidence            34677888899988888753  4455555432 1222221100  11111 23333 6899999999988865544321 


Q ss_pred             ---CCCCEEEEE----E-e----cCCCEEEEEeCCCCEEEEeCCCCeeeEEEec
Q psy4650         121 ---HGQNISAVC----F-H----PELPIVITGSEDGSVRVWHSGTHRLEISLTY  162 (381)
Q Consensus       121 ---~~~~v~~~~----~-~----p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~  162 (381)
                         ...++.. .    . .    -.+..+.+|+.++.+.-.|+.+|+.++.+..
T Consensus        87 ~lv~~SP~~~-~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~  139 (339)
T 2be1_A           87 QLVSTSPLHL-KTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGP  139 (339)
T ss_dssp             HHHTTCSEEE-ECC----------CCEEEEECEEEEEEEEEETTTCCEEEEEST
T ss_pred             cceecccccc-CCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEec
Confidence               1222221 0    0 0    0345778899999999999999999998864

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=88.21  E-value=13  Score=32.58  Aligned_cols=103  Identities=14%  Similarity=0.102  Sum_probs=56.8

Q ss_pred             hcceeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeec---cccccEEEEEeeeC---CCccEEEEEcC---C---
Q psy4650          34 ETKVDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLY---GHEKGVNCVDYYHG---GDKPYLISGAD---D---  101 (381)
Q Consensus        34 ~~~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~---~h~~~v~~~~~~~~---~~~~~l~s~~~---d---  101 (381)
                      ..|..+.+.+++. ++++ ..+|.|++++... . ..+..+.   ........++++|+   +.. +.++-+.   +   
T Consensus        29 ~~P~~ia~~pdG~-l~V~-e~~g~I~~~d~~G-~-~~~~~~~v~~~g~~g~~gia~~pdf~~~g~-lyv~~~~~~~~~~~  103 (354)
T 3a9g_A           29 EVPWSIAPLGGGR-YLVT-ERPGRLVLISPSG-K-KLVASFDVANVGEAGLLGLALHPEFPKKSW-VYLYASYFAEGGHI  103 (354)
T ss_dssp             SCEEEEEEEETTE-EEEE-ETTTEEEEECSSC-E-EEEEECCCCCSTTCSEEEEEECTTTTTSCE-EEEEEEEECGGGCE
T ss_pred             CCCeEEEEcCCCe-EEEE-eCCCEEEEEeCCC-c-eEeeccceeecCCCceeeEEeCCCCCcCCE-EEEEEeccCCCCCc
Confidence            3577788877744 4444 5558999997532 2 2233221   22356889999986   332 3333331   3   


Q ss_pred             -CeEEEEECCCC-------eEE-EEecc-CCCCEEEEEEecCCCEEEEEe
Q psy4650         102 -RLVKIWDYQNK-------TCV-QTLEG-HGQNISAVCFHPELPIVITGS  141 (381)
Q Consensus       102 -~~v~vwd~~~~-------~~~-~~~~~-~~~~v~~~~~~p~~~~l~s~~  141 (381)
                       ..|..|+....       +.+ ..+.. .......+.|.|+|.+.++.+
T Consensus       104 ~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G  153 (354)
T 3a9g_A          104 RNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTG  153 (354)
T ss_dssp             EEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECC
T ss_pred             ceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEEC
Confidence             56666776543       111 11221 111236799999998666543

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=87.73  E-value=19  Score=34.22  Aligned_cols=144  Identities=4%  Similarity=-0.111  Sum_probs=80.6

Q ss_pred             ceeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEE
Q psy4650          36 KVDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCV  115 (381)
Q Consensus        36 ~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~  115 (381)
                      +..+..++....+.++-...+.|+.+++......  ..+........++++.+.+. ++..+-+..+.|.+.+.......
T Consensus       351 ~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~--~v~~~~~~~p~GlAvD~~~~-~lY~tD~~~~~I~v~~~~G~~~~  427 (619)
T 3s94_A          351 AIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQ--FVVTAQIAHPDGIAVDWVAR-NLYWTDTGTDRIEVTRLNGTMRK  427 (619)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE--EEECSSCSCCCEEEEETTTT-EEEEEETTTTEEEEEETTSCSCE
T ss_pred             cEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccE--EEEECCCCCcCceEEecccC-cEEEEeCCCCcEEEEeCCCCeEE
Confidence            4556666544555555556677888877532211  11222234566888875444 25666677889999988755432


Q ss_pred             EEeccCCCCEEEEEEecCCCEEEEEeC--CCCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEE
Q psy4650         116 QTLEGHGQNISAVCFHPELPIVITGSE--DGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIG  182 (381)
Q Consensus       116 ~~~~~~~~~v~~~~~~p~~~~l~s~~~--d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~  182 (381)
                      ..+...-.....++++|....+.-+..  ...|...++............-.....+++++.+..|..+
T Consensus       428 ~l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~l~~P~GlalD~~~~~LY~a  496 (619)
T 3s94_A          428 ILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRVVLVNTSLGWPNGLALDYDEGKIYWG  496 (619)
T ss_dssp             EEECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEE
T ss_pred             EEEECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCccEEEEeCCCCCCeeeEEcccCCEEEEE
Confidence            223333345689999997555544433  3556666665432222222233456677777654444333

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=86.50  E-value=14  Score=31.15  Aligned_cols=54  Identities=13%  Similarity=0.148  Sum_probs=29.8

Q ss_pred             CeEEEEECCCCeEEEE--eccCCCCEEEEEEecCCCEEEEEeCC-----CCEEEEeCCCCeee
Q psy4650         102 RLVKIWDYQNKTCVQT--LEGHGQNISAVCFHPELPIVITGSED-----GSVRVWHSGTHRLE  157 (381)
Q Consensus       102 ~~v~vwd~~~~~~~~~--~~~~~~~v~~~~~~p~~~~l~s~~~d-----~~i~vwd~~~~~~~  157 (381)
                      ..+.+||..+..-...  +........++.  -++..++.||.+     ..+.+||..+.+..
T Consensus       173 ~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~  233 (302)
T 2xn4_A          173 STVECYNATTNEWTYIAEMSTRRSGAGVGV--LNNLLYAVGGHDGPLVRKSVEVYDPTTNAWR  233 (302)
T ss_dssp             CCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCBSSSSBCCCEEEEETTTTEEE
T ss_pred             cEEEEEeCCCCcEEECCCCccccccccEEE--ECCEEEEECCCCCCcccceEEEEeCCCCCEe
Confidence            4578889887653221  221111112222  256666677654     36889999877654

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=85.63  E-value=13  Score=33.41  Aligned_cols=91  Identities=5%  Similarity=-0.013  Sum_probs=61.7

Q ss_pred             CCeEEEEECCCCeEEEEeccC----CCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCe------------eeEEEec--
Q psy4650         101 DRLVKIWDYQNKTCVQTLEGH----GQNISAVCFHPELPIVITGSEDGSVRVWHSGTHR------------LEISLTY--  162 (381)
Q Consensus       101 d~~v~vwd~~~~~~~~~~~~~----~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~------------~~~~~~~--  162 (381)
                      ++.||.-++......+.++..    -..+..+..+|+|.+||..+ +..|.|-.+..+.            ..+.+.-  
T Consensus        40 ~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~  118 (452)
T 3pbp_A           40 DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDE  118 (452)
T ss_dssp             TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGG
T ss_pred             CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccccccceeEEEcCC
Confidence            366676666544334444332    12577899999999998876 4578888887322            1123322  


Q ss_pred             ----CCcceEEEEEcCC---CCEEEEEeCCCeEEEEe
Q psy4650         163 ----GLERVWTISSLKG---SNNVAIGYDEGSVLLKV  192 (381)
Q Consensus       163 ----~~~~v~~v~~~~~---~~~l~~~~~dg~v~i~~  192 (381)
                          ....|..+.|||-   +..|++-..|+.|++|+
T Consensus       119 ~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yD  155 (452)
T 3pbp_A          119 EEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFD  155 (452)
T ss_dssp             CC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEE
T ss_pred             cccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEE
Confidence                2467999999996   45899999999999965

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=85.62  E-value=15  Score=30.98  Aligned_cols=62  Identities=13%  Similarity=0.093  Sum_probs=34.1

Q ss_pred             EEEEEcCC-----CeEEEEECCCCeEEEE--eccCCCCEEEEEEecCCCEEEEEeCC-----CCEEEEeCCCCeee
Q psy4650          94 YLISGADD-----RLVKIWDYQNKTCVQT--LEGHGQNISAVCFHPELPIVITGSED-----GSVRVWHSGTHRLE  157 (381)
Q Consensus        94 ~l~s~~~d-----~~v~vwd~~~~~~~~~--~~~~~~~v~~~~~~p~~~~l~s~~~d-----~~i~vwd~~~~~~~  157 (381)
                      .++.|+.+     ..+.+||..+..-...  +........++.+  ++..++.||.+     ..+.+||..+.+..
T Consensus       171 iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~  244 (308)
T 1zgk_A          171 LYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWT  244 (308)
T ss_dssp             EEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEE
T ss_pred             EEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEE
Confidence            55666544     4578888877643221  1111111122222  56666666654     56889998877543

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=85.46  E-value=15  Score=30.77  Aligned_cols=96  Identities=16%  Similarity=0.165  Sum_probs=47.9

Q ss_pred             eEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCC-----CeEEEEECCCCeEEEE--eccCCCCEEEEE
Q psy4650          57 RVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADD-----RLVKIWDYQNKTCVQT--LEGHGQNISAVC  129 (381)
Q Consensus        57 ~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d-----~~v~vwd~~~~~~~~~--~~~~~~~v~~~~  129 (381)
                      .+.+||+....-..+..+......-.++.+  ++.  .++.|+.+     ..+.++|..+..-...  +........++.
T Consensus       129 ~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~--iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~  204 (301)
T 2vpj_A          129 SMERYDPNIDQWSMLGDMQTAREGAGLVVA--SGV--IYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVAL  204 (301)
T ss_dssp             EEEEEETTTTEEEEEEECSSCCBSCEEEEE--TTE--EEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE
T ss_pred             eEEEEcCCCCeEEECCCCCCCcccceEEEE--CCE--EEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEE
Confidence            578888865333333333211111112222  322  55666544     4588889887753222  111111112222


Q ss_pred             EecCCCEEEEEeCC-----CCEEEEeCCCCeeeE
Q psy4650         130 FHPELPIVITGSED-----GSVRVWHSGTHRLEI  158 (381)
Q Consensus       130 ~~p~~~~l~s~~~d-----~~i~vwd~~~~~~~~  158 (381)
                        .++..++.|+.+     ..+.+||..+.+...
T Consensus       205 --~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~  236 (301)
T 2vpj_A          205 --LNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTT  236 (301)
T ss_dssp             --ETTEEEEECCBCSSSBCCCEEEEETTTTEEEE
T ss_pred             --ECCEEEEEeCCCCCcccceEEEEeCCCCcEEE
Confidence              255666666653     468899998776543

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=84.58  E-value=20  Score=31.38  Aligned_cols=123  Identities=17%  Similarity=0.031  Sum_probs=69.0

Q ss_pred             CCeEEEecCCCc--cceeeEeecccc-ccEEEEEeeeCCCccEEEEEc-----------------CCCeEEEEECCCCeE
Q psy4650          55 SSRVKAFNPIQV--ATLILKTLYGHE-KGVNCVDYYHGGDKPYLISGA-----------------DDRLVKIWDYQNKTC  114 (381)
Q Consensus        55 d~~v~i~~~~~~--~~~~~~~l~~h~-~~v~~~~~~~~~~~~~l~s~~-----------------~d~~v~vwd~~~~~~  114 (381)
                      +.++.+|+....  ....+.++.+.. ...+.+.+.++|.  +.++..                 ..|.|.-+|.  ++.
T Consensus       138 ~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~--fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~~~  213 (355)
T 3sre_A          138 SSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEH--FYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--NDV  213 (355)
T ss_dssp             CCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTE--EEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--TCC
T ss_pred             CCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCC--EEecCCcEeCCcccccchhhccCCccEEEEEEC--CeE
Confidence            457777766432  233344555432 3578899998775  555543                 1233444443  432


Q ss_pred             EEEeccCCCCEEEEEEecCCCEEEEE-eCCCCEEEEeCCC-Cee--eEEEecCCcceEEEEEcC-CCCEEEEEe
Q psy4650         115 VQTLEGHGQNISAVCFHPELPIVITG-SEDGSVRVWHSGT-HRL--EISLTYGLERVWTISSLK-GSNNVAIGY  183 (381)
Q Consensus       115 ~~~~~~~~~~v~~~~~~p~~~~l~s~-~~d~~i~vwd~~~-~~~--~~~~~~~~~~v~~v~~~~-~~~~l~~~~  183 (381)
                      .....+ -...+.++|+|+++.+..+ +..+.|..||+.. |..  ...+ ........++..+ +|++.+++.
T Consensus       214 ~~~~~~-l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G~lwva~~  285 (355)
T 3sre_A          214 RVVAEG-FDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGDLWVGCH  285 (355)
T ss_dssp             EEEEEE-ESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCCEEEEEE
T ss_pred             EEeecC-CcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCCcEEEEec
Confidence            222222 2345899999999876655 4578899999863 332  1222 1234456666776 466555443

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=83.85  E-value=19  Score=30.51  Aligned_cols=63  Identities=10%  Similarity=0.122  Sum_probs=34.1

Q ss_pred             EEEEEcC------CCeEEEEECCCCeEEEE--eccCCCCEEEEEEecCCCEEEEEeCCC-----CEEEEeCCCCeeeE
Q psy4650          94 YLISGAD------DRLVKIWDYQNKTCVQT--LEGHGQNISAVCFHPELPIVITGSEDG-----SVRVWHSGTHRLEI  158 (381)
Q Consensus        94 ~l~s~~~------d~~v~vwd~~~~~~~~~--~~~~~~~v~~~~~~p~~~~l~s~~~d~-----~i~vwd~~~~~~~~  158 (381)
                      .++.|+.      -..+.++|..+..-...  +........++.  -++..++.||.++     .+.+||..+.+...
T Consensus       151 iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~  226 (315)
T 4asc_A          151 VYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATV--HDGRIIVAAGVTDTGLTSSAEVYSITDNKWAP  226 (315)
T ss_dssp             EEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEEEEECSSSEEEEEEEEETTTTEEEE
T ss_pred             EEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEE--ECCEEEEEeccCCCCccceEEEEECCCCeEEE
Confidence            5566655      24688889887642221  111111112222  2566677776544     47888988775443

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=83.77  E-value=27  Score=32.19  Aligned_cols=74  Identities=12%  Similarity=-0.033  Sum_probs=47.7

Q ss_pred             hcceeeeecCCCceEEEEEecCCeEEEecCC-------Cccc------------eeeEeeccccccEEEEEeeeCCCccE
Q psy4650          34 ETKVDITTNKDMIEYKISYQESSRVKAFNPI-------QVAT------------LILKTLYGHEKGVNCVDYYHGGDKPY   94 (381)
Q Consensus        34 ~~~~~i~~~~~~~~~~~s~~~d~~v~i~~~~-------~~~~------------~~~~~l~~h~~~v~~~~~~~~~~~~~   94 (381)
                      .+|..+..+++...+.++-..++.|..+++.       ....            ..+..+ +....-..++|+|++.. +
T Consensus       247 ~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~-~~~~~p~~ia~~p~G~~-l  324 (496)
T 3kya_A          247 KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTI-ADPSWEFQIFIHPTGKY-A  324 (496)
T ss_dssp             SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEEC-SSSSCCEEEEECTTSSE-E
T ss_pred             CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccccceeEec-CCCCCceEEEEcCCCCE-E
Confidence            4667777777666677777788899999985       2111            011222 22344678999998872 3


Q ss_pred             EEEEcCCCeEEEEEC
Q psy4650          95 LISGADDRLVKIWDY  109 (381)
Q Consensus        95 l~s~~~d~~v~vwd~  109 (381)
                      +++-+..+.|+.++.
T Consensus       325 YvaD~~~h~I~kid~  339 (496)
T 3kya_A          325 YFGVINNHYFMRSDY  339 (496)
T ss_dssp             EEEETTTTEEEEEEE
T ss_pred             EEEeCCCCEEEEEec
Confidence            455567788888554

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=82.98  E-value=20  Score=30.10  Aligned_cols=106  Identities=9%  Similarity=0.116  Sum_probs=49.1

Q ss_pred             eEEEEEecC-----CeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCC-----eEEEEECCCCeEEE
Q psy4650          47 EYKISYQES-----SRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDR-----LVKIWDYQNKTCVQ  116 (381)
Q Consensus        47 ~~~~s~~~d-----~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~-----~v~vwd~~~~~~~~  116 (381)
                      .+.+.|+.+     ..+.+||+....-..+..+......-.++.+  ++.  .++.|+.++     .+.+||..+..-..
T Consensus        63 ~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~--iyv~GG~~~~~~~~~~~~~d~~~~~W~~  138 (302)
T 2xn4_A           63 LVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVL--NGL--LYAVGGFDGSTGLSSVEAYNIKSNEWFH  138 (302)
T ss_dssp             EEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTE--EEEEEEECSSCEEEEEEEEETTTTEEEE
T ss_pred             EEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEE--CCE--EEEEcCCCCCccCceEEEEeCCCCeEee
Confidence            344455533     3577888764332222222211111122222  222  555665443     56778887765322


Q ss_pred             E--eccCCCCEEEEEEecCCCEEEEEeCC-------CCEEEEeCCCCeeeE
Q psy4650         117 T--LEGHGQNISAVCFHPELPIVITGSED-------GSVRVWHSGTHRLEI  158 (381)
Q Consensus       117 ~--~~~~~~~v~~~~~~p~~~~l~s~~~d-------~~i~vwd~~~~~~~~  158 (381)
                      .  +........++.  .++..++.||.+       ..+.+||..+.+...
T Consensus       139 ~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~  187 (302)
T 2xn4_A          139 VAPMNTRRSSVGVGV--VGGLLYAVGGYDVASRQCLSTVECYNATTNEWTY  187 (302)
T ss_dssp             ECCCSSCCBSCEEEE--ETTEEEEECCEETTTTEECCCEEEEETTTTEEEE
T ss_pred             cCCCCCcccCceEEE--ECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEE
Confidence            1  211111112222  255556665532       358889988776443

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=82.21  E-value=23  Score=30.33  Aligned_cols=108  Identities=8%  Similarity=0.011  Sum_probs=60.0

Q ss_pred             cccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeE-EEEeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCee
Q psy4650          78 EKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTC-VQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRL  156 (381)
Q Consensus        78 ~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~-~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~  156 (381)
                      .+.+..+.+.+++.  .++.+ .++.|.. ....+.. ......+...+..+.+.|++..++.+...+..+-+|-.....
T Consensus       121 ~~~~~~i~~~~~~~--~~~~~-~~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW  196 (327)
T 2xbg_A          121 PGSPRLIKALGNGS--AEMIT-NVGAIYR-TKDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAW  196 (327)
T ss_dssp             SSCEEEEEEEETTE--EEEEE-TTCCEEE-ESSTTSSEEEEECSCCCCEEEEEECTTSCEEEEETTSSEEEEECTTCSSC
T ss_pred             CCCeEEEEEECCCC--EEEEe-CCccEEE-EcCCCCCCEEeecCCCcceEEEEEcCCCcEEEEECCCcEEEEeCCCCCce
Confidence            34577777776543  45554 4554432 2222321 222234556789999999888777665444444445311111


Q ss_pred             eEEEecCCcceEEEEEcCCCCEEEEEeCCCeEEE
Q psy4650         157 EISLTYGLERVWTISSLKGSNNVAIGYDEGSVLL  190 (381)
Q Consensus       157 ~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i  190 (381)
                      ...-......+..+.+.+++..++ ++.+|.++.
T Consensus       197 ~~~~~~~~~~~~~~~~~~~g~~~~-~~~~G~~~~  229 (327)
T 2xbg_A          197 EPHNRTTSRRLHNMGFTPDGRLWM-IVNGGKIAF  229 (327)
T ss_dssp             EEEECCSSSCEEEEEECTTSCEEE-EETTTEEEE
T ss_pred             eECCCCCCCccceeEECCCCCEEE-EeCCceEEE
Confidence            111123446788888989887654 445677665

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=81.30  E-value=38  Score=32.25  Aligned_cols=151  Identities=8%  Similarity=-0.035  Sum_probs=82.5

Q ss_pred             ceeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeecc------ccccEEEEEeeeCCCccEEEEEcCCCeEEEEEC
Q psy4650          36 KVDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYG------HEKGVNCVDYYHGGDKPYLISGADDRLVKIWDY  109 (381)
Q Consensus        36 ~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~------h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~  109 (381)
                      .+.+..++....+..+-...+.|+.+++.....  ...+..      ....+.++++...+. ++..+-+..+.|.+.+.
T Consensus       342 ~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~--~~v~~~~~~~~~~~~~p~glAvD~~~~-nLY~td~~~~~I~v~~~  418 (628)
T 4a0p_A          342 VRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQG--FTVVVSSVPSQNLEIQPYDLSIDIYSR-YIYWTCEATNVINVTRL  418 (628)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTSCSC--EEEEC--------CCCEEEEEEETTTT-EEEEEETTTTEEEEEET
T ss_pred             ceEEEEecCCCeEEEEecCcceEEEEEcCCCCc--eEEEEcccccccccCCcceEEeeccCC-eEEEEcCCCCEEEEEEC
Confidence            455555555455555555566777776643111  111211      234678888877655 25667778889999998


Q ss_pred             CCCeEEEEe-ccCCCCEEEEEEecCCCEEEEEeC--CC-CEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEe-C
Q psy4650         110 QNKTCVQTL-EGHGQNISAVCFHPELPIVITGSE--DG-SVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGY-D  184 (381)
Q Consensus       110 ~~~~~~~~~-~~~~~~v~~~~~~p~~~~l~s~~~--d~-~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~-~  184 (381)
                      .. .....+ ........+++++|....+.-...  .. .|...++............-.....+++++.+..|..+. .
T Consensus       419 ~G-~~~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~~~~l~~~~l~~P~gla~D~~~~~LYw~D~~  497 (628)
T 4a0p_A          419 DG-RSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTEREVLFFSGLSKPIALALDSRLGKLFWADSD  497 (628)
T ss_dssp             TS-CEEEEEEECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETT
T ss_pred             CC-CeEEEEEeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCCCcEEEEeccCCCccEEEEeCCCCEEEEEeCC
Confidence            64 433333 333456799999995554433322  22 466666653332222222334567788887655444433 2


Q ss_pred             CCeEEE
Q psy4650         185 EGSVLL  190 (381)
Q Consensus       185 dg~v~i  190 (381)
                      .+.|..
T Consensus       498 ~~~I~~  503 (628)
T 4a0p_A          498 LRRIES  503 (628)
T ss_dssp             TTEEEE
T ss_pred             CCEEEE
Confidence            344443

>2ych_A Competence protein PILM; cell cycle, type IV pilus actin secretion; HET: ATP; 2.20A {Thermus thermophilus}

Probab=80.27  E-value=1.1  Score=39.79  Aligned_cols=41  Identities=15%  Similarity=0.080  Sum_probs=28.6

Q ss_pred             EeecHHHHHHHHHHHHHHhHHHHHHHHHh--CCCCcccccccc
Q psy4650         340 HNVSRARFESLIGGLLTSFVQPIEDVLSR--SNITHDQINKFT  380 (381)
Q Consensus       340 ~~~~~~~~e~~~~~~~~~~~~~~~~~l~~--~~~~~~~i~~v~  380 (381)
                      ..++++.|++++++++.++...++++|+.  +++...+++.|+
T Consensus       269 ~~i~~~~~~~~i~~~~~~i~~~i~~~l~~~~~~~~~~~~~~Iv  311 (377)
T 2ych_A          269 ERYSPGRIYDAIRPVLVELTQELRRSLEFFRIQLEEASPEVGY  311 (377)
T ss_dssp             ------CHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCSEEE
T ss_pred             ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCEEE
Confidence            46888999999999999999999999995  567777888775

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	381
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	4e-20
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	9e-17
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	4e-11
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-09
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	5e-08
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	9e-05
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-17
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-13
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	3e-12
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-08
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	7e-07
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	9e-15
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	2e-10
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	2e-07
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	1e-05
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	5e-05
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	0.004
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	3e-14
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	1e-07
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	1e-05
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	0.003
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	2e-12
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	1e-09
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	2e-05
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	0.001
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	5e-12
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	1e-08
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	3e-08
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	5e-12
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	9e-05
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	2e-04
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	0.004
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	5e-12
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	2e-09
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	0.002
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	2e-11
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	4e-04
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	7e-11
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	1e-10
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	1e-05
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	2e-05
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	3e-05
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	6e-05
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	9e-11
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	8e-09
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	2e-08
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	3e-08
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	1e-07
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	6e-07
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	2e-10
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	2e-07
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	2e-07
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	1e-04
d1dkgd2	198	c.55.1.1 (D:186-383) Heat shock protein 70kDa, ATP	3e-10
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	1e-09
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	2e-09
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	5e-08
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	6e-05
d1bupa2	193	c.55.1.1 (A:189-381) Heat shock protein 70kDa, ATP	4e-09
d1bupa2	193	c.55.1.1 (A:189-381) Heat shock protein 70kDa, ATP	1e-06
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	2e-08
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	1e-06
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	9e-06
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	5e-04
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	3e-08
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-06
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	1e-04
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	5e-06
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	1e-05
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	1e-05
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	1e-05
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	3e-05
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	2e-05
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	0.001

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 87.9 bits (216), Expect = 4e-20
 Identities = 33/79 (41%), Positives = 53/79 (67%), Gaps = 2/79 (2%)

Query: 71  LKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCF 130
           L TL GH+  V  V ++ GG   +++S ADD+ +++WDY+NK C++TL  H   ++++ F
Sbjct: 240 LMTLVGHDNWVRGVLFHSGGK--FILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDF 297

Query: 131 HPELPIVITGSEDGSVRVW 149
           H   P V+TGS D +V+VW
Sbjct: 298 HKTAPYVVTGSVDQTVKVW 316

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 78.2 bits (191), Expect = 9e-17
 Identities = 31/138 (22%), Positives = 55/138 (39%), Gaps = 18/138 (13%)

Query: 71  LKTLYGHEKGVNCVDYYHGG------------------DKPYLISGADDRLVKIWDYQNK 112
              L  H   V C+ +                        P+L+SG+ D+ +K+WD    
Sbjct: 178 KAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG 237

Query: 113 TCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISS 172
            C+ TL GH   +  V FH     +++ ++D ++RVW     R   +L      V ++  
Sbjct: 238 MCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDF 297

Query: 173 LKGSNNVAIGYDEGSVLL 190
            K +  V  G  + +V +
Sbjct: 298 HKTAPYVVTGSVDQTVKV 315

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 61.3 bits (147), Expect = 4e-11
 Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 2/60 (3%)

Query: 73  TLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHP 132
            L GH   V  V ++       ++S ++D  +K+WDY+     +TL+GH  ++  + F  
Sbjct: 12  ALSGHRSPVTRVIFHP--VFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDH 69

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 55.9 bits (133), Expect = 2e-09
 Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 1/66 (1%)

Query: 105 KIWDYQNKTCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGL 164
           K W          L GH   ++ V FHP   ++++ SED +++VW   T   E +L    
Sbjct: 1   KEWI-PRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHT 59

Query: 165 ERVWTI 170
           + V  I
Sbjct: 60  DSVQDI 65

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 51.7 bits (122), Expect = 5e-08
 Identities = 33/142 (23%), Positives = 60/142 (42%), Gaps = 1/142 (0%)

Query: 82  NCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPIVITGS 141
           N        +  +++S + D+ +K+W+ Q   CV+T  GH + +  V  + +  ++ + S
Sbjct: 103 NVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCS 162

Query: 142 EDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKVGREEPAV-S 200
            D +VRVW   T   +  L      V  IS    S+  +I    GS   K G+  P + S
Sbjct: 163 NDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLS 222

Query: 201 MDVNGCKIIWARHSEVQQANLK 222
              +    +W   + +    L 
Sbjct: 223 GSRDKTIKMWDVSTGMCLMTLV 244

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.7 bits (96), Expect = 9e-05
 Identities = 14/39 (35%), Positives = 25/39 (64%), Gaps = 2/39 (5%)

Query: 70  ILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWD 108
            +KTL  HE  V  +D++     PY+++G+ D+ VK+W+
Sbjct: 281 CMKTLNAHEHFVTSLDFHK--TAPYVVTGSVDQTVKVWE 317

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 80.2 bits (196), Expect = 2e-17
 Identities = 19/76 (25%), Positives = 31/76 (40%), Gaps = 2/76 (2%)

Query: 75  YGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPEL 134
                G+  V +   G    L++G DD    +WD         L GH   +S +    + 
Sbjct: 267 DNIICGITSVSFSKSGR--LLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDG 324

Query: 135 PIVITGSEDGSVRVWH 150
             V TGS D  +++W+
Sbjct: 325 MAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 69.4 bits (168), Expect = 1e-13
 Identities = 24/122 (19%), Positives = 49/122 (40%), Gaps = 4/122 (3%)

Query: 71  LKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQN--ISAV 128
            +T  GHE  +N + ++  G+     +G+DD   +++D +    + T         I++V
Sbjct: 219 RQTFTGHESDINAICFFPNGN--AFATGSDDATCRLFDLRADQELMTYSHDNIICGITSV 276

Query: 129 CFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSV 188
            F     +++ G +D +  VW +        L     RV  +        VA G  +  +
Sbjct: 277 SFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFL 336

Query: 189 LL 190
            +
Sbjct: 337 KI 338

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 64.8 bits (156), Expect = 3e-12
 Identities = 28/107 (26%), Positives = 50/107 (46%), Gaps = 2/107 (1%)

Query: 86  YYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPIVITGSEDGS 145
                D    +SGA D   K+WD +   C QT  GH  +I+A+CF P      TGS+D +
Sbjct: 190 LSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDAT 249

Query: 146 VRVWHSGTHRLEISLTYGLER--VWTISSLKGSNNVAIGYDEGSVLL 190
            R++     +  ++ ++      + ++S  K    +  GYD+ +  +
Sbjct: 250 CRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNV 296

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 53.2 bits (126), Expect = 2e-08
 Identities = 21/102 (20%), Positives = 38/102 (37%), Gaps = 4/102 (3%)

Query: 53  QESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNK 112
           Q ++ +     IQ+ T   +TL GH   +  + +    D   L+S + D  + IWD    
Sbjct: 32  QITNNIDPVGRIQMRTR--RTLRGHLAKIYAMHWGT--DSRLLVSASQDGKLIIWDSYTT 87

Query: 113 TCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTH 154
             V  +      +    + P    V  G  D    +++  T 
Sbjct: 88  NKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTR 129

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 48.2 bits (113), Expect = 7e-07
 Identities = 14/58 (24%), Positives = 28/58 (48%)

Query: 114 CVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTIS 171
             +TL GH   I A+ +  +  ++++ S+DG + +W S T     ++      V T +
Sbjct: 47  TRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCA 104

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 72.9 bits (177), Expect = 9e-15
 Identities = 27/107 (25%), Positives = 48/107 (44%), Gaps = 8/107 (7%)

Query: 49  KISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWD 108
           K+   +++  K+ +    +     T  GH+  V  V      +  Y++SG+ DR V  WD
Sbjct: 279 KLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDE--YILSGSKDRGVLFWD 336

Query: 109 YQNKTCVQTLEGHGQNISAVC------FHPELPIVITGSEDGSVRVW 149
            ++   +  L+GH  ++ +V         PE  +  TGS D   R+W
Sbjct: 337 KKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIW 383

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 59.4 bits (142), Expect = 2e-10
 Identities = 32/137 (23%), Positives = 54/137 (39%), Gaps = 20/137 (14%)

Query: 72  KTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNK------------TCVQTLE 119
           ++  GH+  V  V +   G    ++SG+ DR VK+W+ QN             TC  T  
Sbjct: 248 ESGTGHKDSVYSVVFTRDGQ--SVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYI 305

Query: 120 GHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGS--- 176
           GH   + +V        +++GS+D  V  W   +    + L      V +++   GS   
Sbjct: 306 GHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLG 365

Query: 177 ---NNVAIGYDEGSVLL 190
              N  A G  +    +
Sbjct: 366 PEYNVFATGSGDCKARI 382

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.2 bits (118), Expect = 2e-07
 Identities = 27/128 (21%), Positives = 54/128 (42%), Gaps = 19/128 (14%)

Query: 82  NCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE-------GHGQNISAVCFHPEL 134
                   GD  Y+ +G+ DR V++WD +    V+ L+       GH  ++ +V F  + 
Sbjct: 207 VTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDG 266

Query: 135 PIVITGSEDGSVRVWHSGT------------HRLEISLTYGLERVWTISSLKGSNNVAIG 182
             V++GS D SV++W+                  E++     + V ++++ +    +  G
Sbjct: 267 QSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSG 326

Query: 183 YDEGSVLL 190
             +  VL 
Sbjct: 327 SKDRGVLF 334

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.8 bits (104), Expect = 1e-05
 Identities = 22/98 (22%), Positives = 38/98 (38%), Gaps = 21/98 (21%)

Query: 71  LKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEG---------- 120
           L     H   V CV + + G+  YL +G +    +++   + + V  L            
Sbjct: 55  LHKSLDHTSVVCCVKFSNDGE--YLATGCNKT-TQVYRVSDGSLVARLSDDSAANKDPEN 111

Query: 121 --------HGQNISAVCFHPELPIVITGSEDGSVRVWH 150
                       I +VCF P+   + TG+ED  +R+W 
Sbjct: 112 LNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWD 149

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.9 bits (99), Expect = 5e-05
 Identities = 12/45 (26%), Positives = 18/45 (40%), Gaps = 4/45 (8%)

Query: 70  ILKTLYGHEKGVNCVDYYHGG----DKPYLISGADDRLVKIWDYQ 110
            L  L GH   V  V   +G     +     +G+ D   +IW Y+
Sbjct: 342 PLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK 386

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.7 bits (83), Expect = 0.004
 Identities = 31/139 (22%), Positives = 48/139 (34%), Gaps = 7/139 (5%)

Query: 82  NCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPIVITGS 141
           +     +      L+SG+ DR V+IWD +   C  TL       +      +   +  GS
Sbjct: 165 DIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGS 224

Query: 142 EDGSVRVWHSGTHRLEISLTYGLER-------VWTISSLKGSNNVAIGYDEGSVLLKVGR 194
            D +VRVW S T  L   L    E        V+++   +   +V  G  + SV L   +
Sbjct: 225 LDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQ 284

Query: 195 EEPAVSMDVNGCKIIWARH 213
                S             
Sbjct: 285 NANNKSDSKTPNSGTCEVT 303

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.6 bits (171), Expect = 3e-14
 Identities = 13/75 (17%), Positives = 28/75 (37%), Gaps = 3/75 (4%)

Query: 75  YGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPEL 134
           + HE  V  + + + G   + +S   D L+  W       +        ++ +     + 
Sbjct: 262 HLHESCVLSLKFAYCGK--WFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDD 318

Query: 135 PIVITGSEDGSVRVW 149
             ++TGS D    V+
Sbjct: 319 KYIVTGSGDKKATVY 333

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.0 bits (120), Expect = 1e-07
 Identities = 16/89 (17%), Positives = 31/89 (34%), Gaps = 9/89 (10%)

Query: 71  LKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE-----GHGQNI 125
           + TL  H + V  V   +     ++ +G     VK+WD  +      +           I
Sbjct: 45  INTL-NHGEVVCAVTISNPTR--HVYTGGKGC-VKVWDISHPGNKSPVSQLDCLNRDNYI 100

Query: 126 SAVCFHPELPIVITGSEDGSVRVWHSGTH 154
            +    P+   +I G E  ++ +W     
Sbjct: 101 RSCKLLPDGCTLIVGGEASTLSIWDLAAP 129

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.8 bits (104), Expect = 1e-05
 Identities = 10/116 (8%), Positives = 32/116 (27%), Gaps = 4/116 (3%)

Query: 75  YGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPEL 134
           +     +  + Y   G+   +   + +  V   +  +K  +     H   + ++ F    
Sbjct: 221 HDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHL---HESCVLSLKFAYCG 277

Query: 135 PIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLL 190
              ++  +D  +  W +               V +         +  G  +    +
Sbjct: 278 KWFVSTGKDNLLNAWRTPYGASIFQSKES-SSVLSCDISVDDKYIVTGSGDKKATV 332

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.7 bits (83), Expect = 0.003
 Identities = 6/43 (13%), Positives = 14/43 (32%), Gaps = 2/43 (4%)

Query: 66  VATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWD 108
                          V   D     D  Y+++G+ D+   +++
Sbjct: 294 TPYGASIFQSKESSSVLSCDISV--DDKYIVTGSGDKKATVYE 334

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 65.3 bits (157), Expect = 2e-12
 Identities = 27/83 (32%), Positives = 46/83 (55%), Gaps = 6/83 (7%)

Query: 73  TLYGHEKGV-NCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFH 131
           TL GH   V  C+ +    +  Y+I+GADD++++++D  NK  +  L GH   + A+ + 
Sbjct: 7   TLRGHMTSVITCLQF----EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYA 62

Query: 132 PELPIVITGSEDGSVRVWHSGTH 154
               I+++GS D +VRVW     
Sbjct: 63  HG-GILVSGSTDRTVRVWDIKKG 84

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 56.8 bits (135), Expect = 1e-09
 Identities = 10/76 (13%), Positives = 28/76 (36%), Gaps = 4/76 (5%)

Query: 75  YGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQ-TLEGHGQNISAVCFHPE 133
             H   ++ +  ++  D   ++    +    I++ ++   V   +      I +V F  +
Sbjct: 278 SYHHTNLSAITTFYVSDN--ILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGK 335

Query: 134 LPIVITGSEDGSVRVW 149
             +V    +DG   + 
Sbjct: 336 T-LVAAVEKDGQSFLE 350

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.1 bits (102), Expect = 2e-05
 Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 1/60 (1%)

Query: 117 TLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGS 176
           TL GH  ++   C   E   VITG++D  +RV+ S   +  + L+     VW +    G 
Sbjct: 7   TLRGHMTSVIT-CLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG 65

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.3 bits (87), Expect = 0.001
 Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 5/87 (5%)

Query: 71  LKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQN--KTCVQTLEGHGQNISAV 128
           L  L GH+ GV  + Y HGG    L+SG+ DR V++WD +    T V            +
Sbjct: 46  LLQLSGHDGGVWALKYAHGG---ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDI 102

Query: 129 CFHPELPIVITGSEDGSVRVWHSGTHR 155
             +  +  ++TGS D ++ VW      
Sbjct: 103 VEYKNIKYIVTGSRDNTLHVWKLPKES 129

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 63.9 bits (153), Expect = 5e-12
 Identities = 15/85 (17%), Positives = 28/85 (32%), Gaps = 3/85 (3%)

Query: 70  ILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTL-EGHGQNISAV 128
           I +  YGH K +  +     G    L S   +  +  WD       +   + H   I+ +
Sbjct: 4   IDQVRYGHNKAITALSSSADGK--TLFSADAEGHINSWDISTGISNRVFPDVHATMITGI 61

Query: 129 CFHPELPIVITGSEDGSVRVWHSGT 153
               +  +     +D    V   G+
Sbjct: 62  KTTSKGDLFTVSWDDHLKVVPAGGS 86

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 53.5 bits (126), Expect = 1e-08
 Identities = 8/51 (15%), Positives = 17/51 (33%)

Query: 113 TCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYG 163
           +  Q   GH + I+A+    +   + +   +G +  W   T          
Sbjct: 3   SIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDV 53

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 52.3 bits (123), Expect = 3e-08
 Identities = 10/71 (14%), Positives = 28/71 (39%), Gaps = 4/71 (5%)

Query: 82  NCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTL---EGHGQNISAVCFHPELPIVI 138
                    D   L +G+ D  V +W+    +    +        ++++V +  E   ++
Sbjct: 226 KVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNE-TTIV 284

Query: 139 TGSEDGSVRVW 149
           +  +D +++ W
Sbjct: 285 SAGQDSNIKFW 295

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 64.1 bits (154), Expect = 5e-12
 Identities = 13/76 (17%), Positives = 30/76 (39%), Gaps = 4/76 (5%)

Query: 81  VNCVDYYHGGDKPYLISGADDRLVKIWDYQNKT--CVQTLEGHGQNISAVCFHPELPIVI 138
           ++C  +    D+  +    ++  V I++        V  L+ H   ++ V + P+   ++
Sbjct: 10  ISCHAWNK--DRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIV 67

Query: 139 TGSEDGSVRVWHSGTH 154
           T   D +  VW     
Sbjct: 68  TCGTDRNAYVWTLKGR 83

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 41.8 bits (96), Expect = 9e-05
 Identities = 14/104 (13%), Positives = 32/104 (30%), Gaps = 4/104 (3%)

Query: 54  ESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKT 113
            +  V  +       + +  L  H   V  VD+    +   +++   DR   +W  + +T
Sbjct: 27  NNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSN--RIVTCGTDRNAYVWTLKGRT 84

Query: 114 CV--QTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHR 155
                 +    +    V + P       GS    + + +     
Sbjct: 85  WKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQEN 128

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 41.0 bits (94), Expect = 2e-04
 Identities = 7/68 (10%), Positives = 20/68 (29%), Gaps = 2/68 (2%)

Query: 125 ISAVCFHPELPIVITGSEDGSVRVWH--SGTHRLEISLTYGLERVWTISSLKGSNNVAIG 182
           IS   ++ +   +     +  V ++            L     +V  +     SN +   
Sbjct: 10  ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTC 69

Query: 183 YDEGSVLL 190
             + +  +
Sbjct: 70  GTDRNAYV 77

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 36.4 bits (82), Expect = 0.004
 Identities = 8/66 (12%), Positives = 14/66 (21%), Gaps = 5/66 (7%)

Query: 88  HGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPE----LPIVITGSED 143
             G          D+                  H  ++S +              T   D
Sbjct: 292 QRGLTARERFQNLDKKASSEG-SAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMD 350

Query: 144 GSVRVW 149
           G + +W
Sbjct: 351 GGMSIW 356

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 63.8 bits (153), Expect = 5e-12
 Identities = 9/70 (12%), Positives = 24/70 (34%), Gaps = 1/70 (1%)

Query: 82  NCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVC-FHPELPIVITG 140
           +        D   + S + D+ +KIW+       +T+    +              +++ 
Sbjct: 240 SVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSI 299

Query: 141 SEDGSVRVWH 150
           S +G +   +
Sbjct: 300 SANGFINFVN 309

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 56.1 bits (133), Expect = 2e-09
 Identities = 13/83 (15%), Positives = 23/83 (27%), Gaps = 2/83 (2%)

Query: 68  TLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISA 127
           T +  +L    +G   V          +        V      + T  +    H    + 
Sbjct: 6   TALFPSLPRTARGTAVVLGNTP-AGDKIQYCNGTS-VYTVPVGSLTDTEIYTEHSHQTTV 63

Query: 128 VCFHPELPIVITGSEDGSVRVWH 150
               P      +G   G+VR+W 
Sbjct: 64  AKTSPSGYYCASGDVHGNVRIWD 86

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 38.0 bits (86), Expect = 0.002
 Identities = 9/85 (10%), Positives = 30/85 (35%), Gaps = 1/85 (1%)

Query: 107 WDYQNKTCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLER 166
                +        H  ++  + + P+   + + S D ++++W+  T ++E ++  G   
Sbjct: 223 KTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRI 282

Query: 167 VWTISSLKGSNN-VAIGYDEGSVLL 190
                 +  +   +      G +  
Sbjct: 283 EDQQLGIIWTKQALVSISANGFINF 307

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 62.2 bits (149), Expect = 2e-11
 Identities = 12/71 (16%), Positives = 23/71 (32%), Gaps = 3/71 (4%)

Query: 82  NCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAV---CFHPELPIVI 138
             +      D     +   D  +++WD     CVQ      Q +              +I
Sbjct: 253 GGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRII 312

Query: 139 TGSEDGSVRVW 149
           + S DG++  +
Sbjct: 313 SLSLDGTLNFY 323

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.9 bits (91), Expect = 4e-04
 Identities = 15/88 (17%), Positives = 29/88 (32%), Gaps = 6/88 (6%)

Query: 91  DKPYLISGA-DDRLVKIWDYQNKT--CVQTLEGH-GQNISAVCFHPELP--IVITGSEDG 144
               +         V+  D  +     V    GH    ++ V F P      + +G E G
Sbjct: 28  TTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESG 87

Query: 145 SVRVWHSGTHRLEISLTYGLERVWTISS 172
            V VW     +   S+   ++  + + +
Sbjct: 88  KVIVWGWTFDKESNSVEVNVKSEFQVLA 115

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.2 bits (144), Expect = 7e-11
 Identities = 20/84 (23%), Positives = 34/84 (40%), Gaps = 4/84 (4%)

Query: 71  LKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCF 130
           +       KGV C+ Y    D   ++SG  D  +KIWD     C + L GH  ++  + +
Sbjct: 8   IHCRSETSKGVYCLQY----DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY 63

Query: 131 HPELPIVITGSEDGSVRVWHSGTH 154
              + I  +      V   ++G  
Sbjct: 64  DERVIITGSSDSTVRVWDVNTGEM 87

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.9 bits (143), Expect = 1e-10
 Identities = 17/82 (20%), Positives = 33/82 (40%), Gaps = 11/82 (13%)

Query: 77  HEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQ---------NKTCVQTLEGHGQNISA 127
             +G   +      D   ++SGA D  +K+WD              C++TL  H   +  
Sbjct: 213 VLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFR 272

Query: 128 VCFHPELPIVITGSEDGSVRVW 149
           + F      +++ S D ++ +W
Sbjct: 273 LQFDEFQ--IVSSSHDDTILIW 292

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.5 bits (103), Expect = 1e-05
 Identities = 20/83 (24%), Positives = 42/83 (50%), Gaps = 6/83 (7%)

Query: 71  LKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCF 130
           ++TL GH++G+ C+ Y        ++SG+ D  +++WD +   C++     G      C 
Sbjct: 171 VRTLNGHKRGIACLQY----RDRLVVSGSSDNTIRLWDIECGACLRV--LEGHEELVRCI 224

Query: 131 HPELPIVITGSEDGSVRVWHSGT 153
             +   +++G+ DG ++VW    
Sbjct: 225 RFDNKRIVSGAYDGKIKVWDLVA 247

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.7 bits (101), Expect = 2e-05
 Identities = 25/109 (22%), Positives = 47/109 (43%), Gaps = 4/109 (3%)

Query: 82  NCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPIVITGS 141
                    D  Y++S + DR +K+W+      V+TL GH + I+ + +     +V++GS
Sbjct: 138 RAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDR--LVVSGS 195

Query: 142 EDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLL 190
            D ++R+W          L    E V  I     +  +  G  +G + +
Sbjct: 196 SDNTIRLWDIECGACLRVLEGHEELVRCIR--FDNKRIVSGAYDGKIKV 242

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.9 bits (99), Expect = 3e-05
 Identities = 10/58 (17%), Positives = 23/58 (39%), Gaps = 1/58 (1%)

Query: 112 KTCVQTLEGHGQNISAV-CFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVW 168
           +  +Q +    +    V C   +   +++G  D ++++W   T   +  LT     V 
Sbjct: 2   RHSLQRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVL 59

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.1 bits (97), Expect = 6e-05
 Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 4/41 (9%)

Query: 68  TLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWD 108
           TL L+TL  H   V  + +    D+  ++S + D  + IWD
Sbjct: 257 TLCLRTLVEHSGRVFRLQF----DEFQIVSSSHDDTILIWD 293

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.2 bits (144), Expect = 9e-11
 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 3/62 (4%)

Query: 71  LKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCF 130
            K L GH+  V     + G     ++SG+DD  +K+W      C++TL GH   + +   
Sbjct: 9   PKVLKGHDDHVITCLQFCGN---RIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQM 65

Query: 131 HP 132
             
Sbjct: 66  RD 67

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.4 bits (129), Expect = 8e-09
 Identities = 31/121 (25%), Positives = 58/121 (47%), Gaps = 7/121 (5%)

Query: 71  LKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCF 130
           L TL GH        Y    D  +++SG+ D  +++WD +   C+ TL GH    S +  
Sbjct: 170 LHTLQGH----TNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMEL 225

Query: 131 HPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAI-GYDEGSVL 189
              +  +++G+ D +V++W   T +   +L    +    ++ L+ + N  I   D+G+V 
Sbjct: 226 KDNI--LVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVK 283

Query: 190 L 190
           L
Sbjct: 284 L 284

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.3 bits (126), Expect = 2e-08
 Identities = 38/128 (29%), Positives = 58/128 (45%), Gaps = 10/128 (7%)

Query: 71  LKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCF 130
           + TL GH+   + ++         L+SG  D  VKIWD +   C+QTL+G  ++ SAV  
Sbjct: 210 IHTLTGHQSLTSGMEL----KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTC 265

Query: 131 HPELP-IVITGSEDGSVRVWHSGTHRLEISLTYGLE-----RVWTISSLKGSNNVAIGYD 184
                  VIT S+DG+V++W   T     +L           VW I +       A+G  
Sbjct: 266 LQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSR 325

Query: 185 EGSVLLKV 192
            G+   K+
Sbjct: 326 NGTEETKL 333

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.5 bits (124), Expect = 3e-08
 Identities = 15/77 (19%), Positives = 30/77 (38%), Gaps = 9/77 (11%)

Query: 82  NCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTL-----EGHGQNISAVCFHPELPI 136
                    +K ++I+ +DD  VK+WD +    ++ L      G G  +  +       +
Sbjct: 260 QSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLV 319

Query: 137 VITGSEDGS----VRVW 149
              GS +G+    + V 
Sbjct: 320 CAVGSRNGTEETKLLVL 336

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.0 bits (120), Expect = 1e-07
 Identities = 14/65 (21%), Positives = 29/65 (44%), Gaps = 1/65 (1%)

Query: 107 WDYQNKTCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLER 166
           W        + L+GH  ++   C       +++GS+D +++VW + T +   +L      
Sbjct: 1   WRRGELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGG 59

Query: 167 VWTIS 171
           VW+  
Sbjct: 60  VWSSQ 64

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.3 bits (113), Expect = 6e-07
 Identities = 36/118 (30%), Positives = 56/118 (47%), Gaps = 8/118 (6%)

Query: 73  TLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHP 132
            L GH   V CV Y        ++SGA D +VK+WD + +TC+ TL+GH   + ++ F  
Sbjct: 132 VLMGHVAAVRCVQYDG----RRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDG 187

Query: 133 ELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLL 190
               V++GS D S+RVW   T     +LT        +      N +  G  + +V +
Sbjct: 188 IH--VVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMEL--KDNILVSGNADSTVKI 241

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 58.8 bits (140), Expect = 2e-10
 Identities = 7/69 (10%), Positives = 27/69 (39%), Gaps = 2/69 (2%)

Query: 83  CVDYYHGGDKPYLISGADDRLVKIWDYQN-KTCVQTLEGHGQNISAVCFHPELPIVITGS 141
                   ++  + +G+ D  + I+  +     ++ L  H   ++ + +      +++  
Sbjct: 218 KGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETP-STLVSSG 276

Query: 142 EDGSVRVWH 150
            D  ++ W+
Sbjct: 277 ADACIKRWN 285

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.0 bits (117), Expect = 2e-07
 Identities = 16/84 (19%), Positives = 27/84 (32%), Gaps = 11/84 (13%)

Query: 71  LKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCF 130
           LKT+ GH KG+  +          LISG+ D  +  W   +       + H   I ++  
Sbjct: 6   LKTISGHNKGITALTVN------PLISGSYDGRIMEWSSSS-----MHQDHSNLIVSLDN 54

Query: 131 HPELPIVITGSEDGSVRVWHSGTH 154
                      +D       +   
Sbjct: 55  SKAQEYSSISWDDTLKVNGITKHE 78

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.6 bits (116), Expect = 2e-07
 Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 4/43 (9%)

Query: 111 NKTCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGT 153
           +   ++T+ GH + I+A+  +P    +I+GS DG +  W S +
Sbjct: 2   HDEVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSS 40

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.5 bits (95), Expect = 1e-04
 Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 3/39 (7%)

Query: 70  ILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWD 108
           I+K L  H+ GVN + +        L+S   D  +K W+
Sbjct: 250 IIKALNAHKDGVNNLLWETPS---TLVSSGADACIKRWN 285

>d1dkgd2 c.55.1.1 (D:186-383) Heat shock protein 70kDa, ATPase fragment {Escherichia coli, gene dnaK [TaxId: 562]} Length = 198

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Heat shock protein 70kDa, ATPase fragment
species: Escherichia coli, gene dnaK [TaxId: 562]

 Score = 56.8 bits (137), Expect = 3e-10
 Identities = 17/78 (21%), Positives = 36/78 (46%), Gaps = 4/78 (5%)

Query: 246 KYRLDISDSHRSVAKLRAAAETCMHVLSTLQSSNVFVESLYDGL----DFHHNVSRARFE 301
              +D+ +   ++ +L+ AAE     LS+ Q ++V +  +          +  V+RA+ E
Sbjct: 62  DQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNLPYITADATGPKHMNIKVTRAKLE 121

Query: 302 SLIGGLLTSFVQPCMHVL 319
           SL+  L+   ++     L
Sbjct: 122 SLVEDLVNRSIELLKVAL 139

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 57.2 bits (136), Expect = 1e-09
 Identities = 11/89 (12%), Positives = 31/89 (34%), Gaps = 3/89 (3%)

Query: 71  LKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCF 130
                     VN +++       +L +   D ++  W+ Q +  ++      +  S V  
Sbjct: 244 NLKDTNLAYPVNSIEFSP--RHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNE-DSVVKI 300

Query: 131 HPELPIVITGSEDGSVRVWHSGTHRLEIS 159
                I+   + D + +   +    +E++
Sbjct: 301 ACSDNILCLATSDDTFKTNAAIDQTIELN 329

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 56.4 bits (134), Expect = 2e-09
 Identities = 7/89 (7%), Positives = 25/89 (28%), Gaps = 6/89 (6%)

Query: 70  ILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE---GHGQNIS 126
           I++     +  ++ +          L+  + D  + ++ +  +     L     +   + 
Sbjct: 3   IVQIEQAPKDYISDIKIIPSKS--LLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLL 60

Query: 127 AVCFHPELP-IVITGSEDGSVRVWHSGTH 154
              F       +  G+  G +        
Sbjct: 61  CCNFIDNTDLQIYVGTVQGEILKVDLIGS 89

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.8 bits (122), Expect = 5e-08
 Identities = 13/65 (20%), Positives = 23/65 (35%)

Query: 114 CVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSL 173
            VQ  +     IS +   P   +++  S DGS+ V+        + L   L     +   
Sbjct: 3   IVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCC 62

Query: 174 KGSNN 178
              +N
Sbjct: 63  NFIDN 67

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.1 bits (97), Expect = 6e-05
 Identities = 18/153 (11%), Positives = 41/153 (26%), Gaps = 16/153 (10%)

Query: 48  YKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIW 107
             I    +S+V+ F                 K           ++      + D  V + 
Sbjct: 162 RLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVE 221

Query: 108 DYQNKTCVQTL---------------EGHGQNISAVCFHPELPIVITGSEDGSVRVWHSG 152
            + ++                           ++++ F P    + T   DG +  W+  
Sbjct: 222 FFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQ 281

Query: 153 THRLEISLT-YGLERVWTISSLKGSNNVAIGYD 184
           T +   +   +  + V  I+       +A   D
Sbjct: 282 TRKKIKNFAKFNEDSVVKIACSDNILCLATSDD 314

>d1bupa2 c.55.1.1 (A:189-381) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]} Length = 193

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Heat shock protein 70kDa, ATPase fragment
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 53.4 bits (128), Expect = 4e-09
 Identities = 27/74 (36%), Positives = 46/74 (62%)

Query: 246 KYRLDISDSHRSVAKLRAAAETCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIG 305
           K++ DIS++ R+V +LR A E     LS+   +++ ++SLY+G+DF+ +++RARFE L  
Sbjct: 60  KHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNA 119

Query: 306 GLLTSFVQPCMHVL 319
            L    + P    L
Sbjct: 120 DLFRGTLDPVEKAL 133

>d1bupa2 c.55.1.1 (A:189-381) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]} Length = 193

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Heat shock protein 70kDa, ATPase fragment
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 46.1 bits (109), Expect = 1e-06
 Identities = 20/62 (32%), Positives = 37/62 (59%)

Query: 317 HVLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIGGLLTSFVQPIEDVLSRSNITHDQI 376
             LS+   +++ ++SLY+G+DF+ +++RARFE L   L    + P+E  L  + +   QI
Sbjct: 84  RTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRGTLDPVEKALRDAKLDKSQI 143

Query: 377 NK 378
           + 
Sbjct: 144 HD 145

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.3 bits (126), Expect = 2e-08
 Identities = 17/117 (14%), Positives = 33/117 (28%), Gaps = 17/117 (14%)

Query: 76  GHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTC------VQTLEGHGQNISAVC 129
            H+  +  V         + +S + D  +K+WD +            +   H   +  V 
Sbjct: 12  AHDADIFSVSA----CNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVD 67

Query: 130 F-------HPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNV 179
                     EL +V T S  G +  +          + +    +      K S   
Sbjct: 68  VLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWA 124

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.9 bits (112), Expect = 1e-06
 Identities = 17/115 (14%), Positives = 35/115 (30%), Gaps = 7/115 (6%)

Query: 42  NKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADD 101
           N          +   R+ + +    ++      + H   V  + +   G+   L S   D
Sbjct: 253 NSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGE--TLCSAGWD 310

Query: 102 RLVKIWDYQNKTCVQTLEGHGQNIS----AVCFHPELPIVITGSEDGSVRVWHSG 152
             ++ WD + K  + TL  H  +I      +        +        V+    G
Sbjct: 311 GKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVF-DVKFLKKG 364

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.8 bits (104), Expect = 9e-06
 Identities = 9/53 (16%), Positives = 17/53 (32%), Gaps = 2/53 (3%)

Query: 113 TCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLE 165
                 + H  +I +V         ++ S DG ++VW +     E        
Sbjct: 5   ATANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYS 55

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.5 bits (90), Expect = 5e-04
 Identities = 5/111 (4%), Positives = 24/111 (21%), Gaps = 15/111 (13%)

Query: 55  SSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTC 114
                     +  +  +     H   V         +   + + +    +  +    +  
Sbjct: 42  KLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDE 101

Query: 115 VQTLEG----------HGQNISAVCFHPELP-----IVITGSEDGSVRVWH 150
            + +               +  A+ +           ++     G+  +W 
Sbjct: 102 TKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWK 152

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 52.9 bits (125), Expect = 3e-08
 Identities = 15/111 (13%), Positives = 37/111 (33%), Gaps = 5/111 (4%)

Query: 51  SYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVD-YYHGGDKPYLISGADDRLVKIWDY 109
            Y  +   K  +PI V     + +   E  +       HG    Y     +  ++  +D 
Sbjct: 246 EYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDV 305

Query: 110 QNKTCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISL 160
           + +     +     N++ +    +   V+   +DG +  +       E ++
Sbjct: 306 KTRK----VTEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDERTV 352

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 46.7 bits (109), Expect = 2e-06
 Identities = 14/123 (11%), Positives = 34/123 (27%), Gaps = 2/123 (1%)

Query: 34  ETKVDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKP 93
                + T     + K     +  +  +  + + T    T    +              P
Sbjct: 205 HEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDP 264

Query: 94  YLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGT 153
             I G  +R +  +D + +  ++           V F  +   +  G     + V++  T
Sbjct: 265 NQIYGVLNR-LAKYDLKQRKLIKAAN-LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDT 322

Query: 154 HRL 156
              
Sbjct: 323 LEK 325

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 41.6 bits (96), Expect = 1e-04
 Identities = 7/75 (9%), Positives = 18/75 (24%), Gaps = 2/75 (2%)

Query: 91  DKPYLISGADDRLVKIWDYQNKTCVQTLE-GHGQNISAVCFHPE-LPIVITGSEDGSVRV 148
              Y+I       + + D  + T  ++               P+     +  +  G +  
Sbjct: 7   GHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYG 66

Query: 149 WHSGTHRLEISLTYG 163
               T +        
Sbjct: 67  IDLDTCKNTFHANLS 81

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 45.6 bits (106), Expect = 5e-06
 Identities = 8/68 (11%), Positives = 20/68 (29%), Gaps = 3/68 (4%)

Query: 92  KPYLISGADDRLVKIWDYQNKTCVQTLE--GHGQNISAVCFHPE-LPIVITGSEDGSVRV 148
           + Y+++ A    + + D +     + +     G         P       T ++  S+  
Sbjct: 1   RDYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVK 60

Query: 149 WHSGTHRL 156
               T   
Sbjct: 61  IDLVTGET 68

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 44.4 bits (103), Expect = 1e-05
 Identities = 6/74 (8%), Positives = 25/74 (33%), Gaps = 1/74 (1%)

Query: 80  GVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPIVIT 139
            ++   +    +     +     +++ +D +    ++ +     +  +V    +   V  
Sbjct: 238 IMDVFYFSTAVNPAKTRAFGAYNVLESFDLEKNASIKRVP-LPHSYYSVNVSTDGSTVWL 296

Query: 140 GSEDGSVRVWHSGT 153
           G   G +  + + T
Sbjct: 297 GGALGDLAAYDAET 310

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 44.9 bits (105), Expect = 1e-05
 Identities = 9/92 (9%), Positives = 25/92 (27%), Gaps = 9/92 (9%)

Query: 90  GDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVW 149
               + ++  D   + + D  +K  V+ ++  G  +           ++    D  + + 
Sbjct: 30  LPNLFSVTLRDAGQIALVDGDSKKIVKVIDT-GYAVHISRMSASGRYLLVIGRDARIDMI 88

Query: 150 HSGTHRLEISLTYGLERVWTISSLKGSNNVAI 181
                            V  I     + +V  
Sbjct: 89  DLWAKEPTK--------VAEIKIGIEARSVES 112

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 44.4 bits (103), Expect = 1e-05
 Identities = 5/69 (7%), Positives = 20/69 (28%)

Query: 64  IQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQ 123
           +   T      +     ++ ++               D+ + I D ++   ++++   G 
Sbjct: 285 LDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGH 344

Query: 124 NISAVCFHP 132
               +    
Sbjct: 345 GPQVITTAD 353

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 43.2 bits (100), Expect = 3e-05
 Identities = 7/68 (10%), Positives = 21/68 (30%), Gaps = 3/68 (4%)

Query: 91  DKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHP--ELPIVITGSEDGSVRV 148
            +         R V + D +    +   E  G  I ++      +  +    + D ++ +
Sbjct: 269 QRDEWRHKTASRFVVVLDAKTGERLAKFE-MGHEIDSINVSQDEKPLLYALSTGDKTLYI 327

Query: 149 WHSGTHRL 156
             + +   
Sbjct: 328 HDAESGEE 335

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 44.1 bits (102), Expect = 2e-05
 Identities = 7/62 (11%), Positives = 22/62 (35%), Gaps = 2/62 (3%)

Query: 96  ISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPE-LPIVITGSEDGSVRVWHSGTH 154
           I+ ++   + + D  +     T+     N       P+   + +  +    V +  + T+
Sbjct: 6   IANSESDNISVIDVTSNKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATN 64

Query: 155 RL 156
            +
Sbjct: 65  NV 66

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 38.3 bits (87), Expect = 0.001
 Identities = 9/84 (10%), Positives = 23/84 (27%), Gaps = 2/84 (2%)

Query: 81  VNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPE-LPIVIT 139
                   G              V + D         +     + + +   P+   + + 
Sbjct: 203 SGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP-DPAGIAVTPDGKKVYVA 261

Query: 140 GSEDGSVRVWHSGTHRLEISLTYG 163
            S   +V V  + T+ +  ++  G
Sbjct: 262 LSFCNTVSVIDTATNTITATMAVG 285

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	381
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	99.94
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.92
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	99.91
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.91
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	99.91
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	99.9
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.89
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.89
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.89
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.88
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.88
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.88
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.86
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.86
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.85
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.85
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.84
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.84
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.82
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.8
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.79
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.79
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.78
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.76
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.76
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.76
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.75
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.73
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.69
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.64
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.62
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.59
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.56
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.55
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.55
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.47
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.43
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.37
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.36
d1dkgd2	198	Heat shock protein 70kDa, ATPase fragment {Escheri	99.25
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.25
d1bupa2	193	Heat shock protein 70kDa, ATPase fragment {Cow (Bo	99.22
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.03
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.02
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.01
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	98.97
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	98.92
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	98.84
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	98.81
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	98.7
d1dkgd2	198	Heat shock protein 70kDa, ATPase fragment {Escheri	98.67
d1bupa2	193	Heat shock protein 70kDa, ATPase fragment {Cow (Bo	98.65
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	98.51
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	98.43
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	98.25
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.11
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.1
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.08
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	97.97
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	97.91
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	97.88
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	97.83
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	97.71
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	97.64
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	97.45
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	97.41
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	97.26
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	97.24
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	97.22
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	96.98
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	96.83
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	96.58
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	96.45
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	96.35
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	96.27
d1dkgd1	183	Heat shock protein 70kDa, ATPase fragment {Escheri	96.04
d1bupa1	185	Heat shock protein 70kDa, ATPase fragment {Cow (Bo	95.66
d1jcea2	196	Prokaryotic actin homolog MreB {Thermotoga maritim	95.28
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	94.96
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	94.77
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	94.43
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	93.82
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	93.63
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	92.18
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	91.64
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	91.46
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	91.39
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	91.04
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	90.51
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	88.38
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	86.74
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	86.44
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	83.33
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	81.98
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	80.48

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.94  E-value=1.8e-25  Score=196.43  Aligned_cols=202  Identities=12%  Similarity=0.147  Sum_probs=168.1

Q ss_pred             eeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcC--CCeEEEEECCCCeE
Q psy4650          37 VDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGAD--DRLVKIWDYQNKTC  114 (381)
Q Consensus        37 ~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~--d~~v~vwd~~~~~~  114 (381)
                      ..+.+.|+ +.++++|+.||+|++|++..........+.+|.++|.+++|+|++.  ++++++.  +..+++|++.+++.
T Consensus        62 ~~~~~sp~-g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~--~l~~~~~~~~~~~~v~~~~~~~~  138 (311)
T d1nr0a1          62 TVAKTSPS-GYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESK--RIAAVGEGRERFGHVFLFDTGTS  138 (311)
T ss_dssp             EEEEECTT-SSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSC--EEEEEECCSSCSEEEEETTTCCB
T ss_pred             EEEEEeCC-CCeEeccccCceEeeeeeeccccccccccccccCcccccccccccc--ccccccccccccccccccccccc
Confidence            45556776 6799999999999999998755555567889999999999999876  7777765  56799999999998


Q ss_pred             EEEeccCCCCEEEEEEecCCC-EEEEEeCCCCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCCCeEEEEec
Q psy4650         115 VQTLEGHGQNISAVCFHPELP-IVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKVG  193 (381)
Q Consensus       115 ~~~~~~~~~~v~~~~~~p~~~-~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~~  193 (381)
                      ...+.+|...|.+++|+|+++ .+++|+.|+.|++||+++++....+..|...|.++.|+|+++++++++.||.+++   
T Consensus       139 ~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~---  215 (311)
T d1nr0a1         139 NGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVL---  215 (311)
T ss_dssp             CBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEE---
T ss_pred             cccccccccccccccccccceeeecccccccccccccccccccccccccccccccccccCccccccccccccccccc---
Confidence            899999999999999999988 5889999999999999999999999999999999999999999999999999999   


Q ss_pred             CCCceEEEecCCCEEEEEecCceeecccccCC---ccccccCCceEEeeehHHHHHhccCCCc
Q psy4650         194 REEPAVSMDVNGCKIIWARHSEVQQANLKTMP---EVFENITAGVVLTLSVHVTIKYRLDISD  253 (381)
Q Consensus       194 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~dg~~l~~~~~d~~~~~~d~~~  253 (381)
                             ||..++...........  ...++.   ..++|+|+|.++++++.|+..++||+..
T Consensus       216 -------~d~~~~~~~~~~~~~~~--~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t  269 (311)
T d1nr0a1         216 -------YNGVDGTKTGVFEDDSL--KNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVAT  269 (311)
T ss_dssp             -------EETTTCCEEEECBCTTS--SSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred             -------ccccccccccccccccc--ccccccccccccccCCCCCEEEEEeCCCeEEEEECCC
Confidence                   66666665554432211  111111   1257899999999999999999999864

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.92  E-value=1.2e-23  Score=185.75  Aligned_cols=193  Identities=17%  Similarity=0.251  Sum_probs=155.4

Q ss_pred             eeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEE--------
Q psy4650          37 VDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWD--------  108 (381)
Q Consensus        37 ~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd--------  108 (381)
                      .++.++++ +.++++|+.||+|++||+..  ...+..+.+|...|.+++|+|++.  ++++|+.|+.+++|+        
T Consensus        59 ~~l~~s~~-~~~l~sgs~Dg~v~iWd~~~--~~~~~~~~~~~~~v~~v~~~~~~~--~l~~~~~d~~i~~~~~~~~~~~~  133 (340)
T d1tbga_          59 YAMHWGTD-SRLLVSASQDGKLIIWDSYT--TNKVHAIPLRSSWVMTCAYAPSGN--YVACGGLDNICSIYNLKTREGNV  133 (340)
T ss_dssp             EEEEECTT-SSEEEEEETTTEEEEEETTT--TEEEEEEECSCSCEEEEEECTTSS--EEEEEETTCCEEEEESSSSCSCC
T ss_pred             EEEEECCC-CCEEEEEECCCceeeeeccc--ceeEEEEecccccEEeeEeeccce--eeeeecccceeeccccccccccc
Confidence            46667776 56999999999999999874  566788999999999999999766  566666666655555        


Q ss_pred             -------------------------------------------------------------------------------C
Q psy4650         109 -------------------------------------------------------------------------------Y  109 (381)
Q Consensus       109 -------------------------------------------------------------------------------~  109 (381)
                                                                                                     +
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~  213 (340)
T d1tbga_         134 RVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDV  213 (340)
T ss_dssp             CEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTTEEEEEET
T ss_pred             ccceecccccccccccccccccccccccccccccccccccccccccccccceeEeeeccccccceeEEeecCceEEEEEC
Confidence                                                                                           3


Q ss_pred             CCCeEEEEeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEe--cCCcceEEEEEcCCCCEEEEEeCCCe
Q psy4650         110 QNKTCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLT--YGLERVWTISSLKGSNNVAIGYDEGS  187 (381)
Q Consensus       110 ~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~--~~~~~v~~v~~~~~~~~l~~~~~dg~  187 (381)
                      .++.++..+.+|.++|.+++|+|++.++++|+.|+.+++||+........+.  .+...+.+++|+|++.++++|+.||.
T Consensus       214 ~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~  293 (340)
T d1tbga_         214 REGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFN  293 (340)
T ss_dssp             TTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSCEEEEEETTSC
T ss_pred             CCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccccccCceEEEEECCCCCEEEEEECCCE
Confidence            3355566678899999999999999999999999999999999988877664  35667999999999999999999999


Q ss_pred             EEEEecCCCceEEEecCCCEEEEEecCceeecccccCCccccccCCceEEeeehHHHHHhccC
Q psy4650         188 VLLKVGREEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSVHVTIKYRLD  250 (381)
Q Consensus       188 v~i~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~d~~~~~~d  250 (381)
                      +++          ||..++.++.....+..  .+.    .++|+|+|.++++++.|+.+++||
T Consensus       294 i~i----------wd~~~~~~~~~~~~H~~--~V~----~l~~s~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         294 CNV----------WDALKADRAGVLAGHDN--RVS----CLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             EEE----------EETTTCCEEEEECCCSS--CEE----EEEECTTSSCEEEEETTSCEEEEC
T ss_pred             EEE----------EECCCCcEEEEEcCCCC--CEE----EEEEeCCCCEEEEEccCCEEEEeC
Confidence            999          77777776655543211  111    156789999999999999888886

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.91  E-value=2.3e-23  Score=182.82  Aligned_cols=197  Identities=14%  Similarity=0.119  Sum_probs=158.8

Q ss_pred             ceeeeecCCCceEEEEEec--CCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCe
Q psy4650          36 KVDITTNKDMIEYKISYQE--SSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKT  113 (381)
Q Consensus        36 ~~~i~~~~~~~~~~~s~~~--d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~  113 (381)
                      ..++.+.+++ .++++++.  +..+++|+...  .....++.+|.+.|.+++|+|++.. .+++|+.|+.|++||.++++
T Consensus       105 v~~v~~s~d~-~~l~~~~~~~~~~~~v~~~~~--~~~~~~l~~h~~~v~~v~~~~~~~~-~l~sgs~d~~i~i~d~~~~~  180 (311)
T d1nr0a1         105 VKDISWDSES-KRIAAVGEGRERFGHVFLFDT--GTSNGNLTGQARAMNSVDFKPSRPF-RIISGSDDNTVAIFEGPPFK  180 (311)
T ss_dssp             EEEEEECTTS-CEEEEEECCSSCSEEEEETTT--CCBCBCCCCCSSCEEEEEECSSSSC-EEEEEETTSCEEEEETTTBE
T ss_pred             cccccccccc-ccccccccccccccccccccc--cccccccccccccccccccccccee-eecccccccccccccccccc
Confidence            3566677764 46666664  45688998863  3456788999999999999998763 68899999999999999999


Q ss_pred             EEEEeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEe-------cCCcceEEEEEcCCCCEEEEEeCCC
Q psy4650         114 CVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLT-------YGLERVWTISSLKGSNNVAIGYDEG  186 (381)
Q Consensus       114 ~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~-------~~~~~v~~v~~~~~~~~l~~~~~dg  186 (381)
                      ....+.+|..+|.++.|+|++.++++++.|+.+++||..++.....+.       +|...|.+++|+|++++|++|+.||
T Consensus       181 ~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg  260 (311)
T d1nr0a1         181 FKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADK  260 (311)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTS
T ss_pred             cccccccccccccccccCccccccccccccccccccccccccccccccccccccccccccccccccCCCCCEEEEEeCCC
Confidence            999999999999999999999999999999999999999988777664       4678899999999999999999999


Q ss_pred             eEEEEecCCCceEEEecCCCEEEEEecCceeecccccCCccccccCCceEEeeehHHHHHhccCC
Q psy4650         187 SVLLKVGREEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSVHVTIKYRLDI  251 (381)
Q Consensus       187 ~v~i~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~d~~~~~~d~  251 (381)
                      .+++          ||..+++++..+..+.....   ..  ..+.+++..+++++.++.++.||+
T Consensus       261 ~v~i----------wd~~t~~~~~~l~~~~~~~~---~~--~~~~~~~~~l~s~s~dG~i~~wd~  310 (311)
T d1nr0a1         261 TIKI----------WNVATLKVEKTIPVGTRIED---QQ--LGIIWTKQALVSISANGFINFVNP  310 (311)
T ss_dssp             EEEE----------EETTTTEEEEEEECCSSGGG---CE--EEEEECSSCEEEEETTCCEEEEET
T ss_pred             eEEE----------EECCCCcEEEEEECCCCccc---eE--EEEEecCCEEEEEECCCEEEEEeC
Confidence            9999          88888887765543221111   01  123345667888888888888876

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.91  E-value=4.2e-24  Score=192.29  Aligned_cols=208  Identities=12%  Similarity=0.036  Sum_probs=158.5

Q ss_pred             eeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeE--
Q psy4650          37 VDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTC--  114 (381)
Q Consensus        37 ~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~--  114 (381)
                      .++.++++ +.++++++.||.|++|+...........+++|.++|.+++|+|++.  +|++|+.|++|++||+.++..  
T Consensus        11 t~~~~s~d-g~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~--~l~s~s~D~~i~vWd~~~~~~~~   87 (371)
T d1k8kc_          11 SCHAWNKD-RTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSN--RIVTCGTDRNAYVWTLKGRTWKP   87 (371)
T ss_dssp             CEEEECTT-SSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTT--EEEEEETTSCEEEEEEETTEEEE
T ss_pred             EEEEECCC-CCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCC--EEEEEECCCeEEEEeeccccccc
Confidence            35666776 4688899999999999986544456788999999999999999876  899999999999999987753  


Q ss_pred             EEEeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeee----EEEecCCcceEEEEEcCCCCEEEEEeCCCeEEE
Q psy4650         115 VQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLE----ISLTYGLERVWTISSLKGSNNVAIGYDEGSVLL  190 (381)
Q Consensus       115 ~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~----~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i  190 (381)
                      ...+.+|...|.+++|+|+++.+++|+.|+++++|++......    .....|...|.+++|+|++.++++|+.||.+++
T Consensus        88 ~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v  167 (371)
T d1k8kc_          88 TLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRI  167 (371)
T ss_dssp             EEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred             ccccccccccccccccccccccceeecccCcceeeeeecccccccccccccccccccccccccccccceeccccCcEEEE
Confidence            4556788999999999999999999999999999998765432    233457889999999999999999999999999


Q ss_pred             EecCCCceE------EEec--CCCEEEEEecCceeecccccCCccccccCCceEEeeehHHHHHhccCCCc
Q psy4650         191 KVGREEPAV------SMDV--NGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSVHVTIKYRLDISD  253 (381)
Q Consensus       191 ~~~~~~~~~------~~d~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~d~~~~~~d~~~  253 (381)
                      |+.......      .|+.  ..+..+.....+  ...+    ..++|+|+|..+++++.|+....||+..
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v----~~~~~s~~g~~l~s~~~d~~i~iwd~~~  232 (371)
T d1k8kc_         168 FSAYIKEVEERPAPTPWGSKMPFGELMFESSSS--CGWV----HGVCFSANGSRVAWVSHDSTVCLADADK  232 (371)
T ss_dssp             EECCCTTTSCCCCCBTTBSCCCTTCEEEECCCC--SSCE----EEEEECSSSSEEEEEETTTEEEEEEGGG
T ss_pred             EeeccCccccccccccccccccceeeeeeccCc--cCcE----EEEEeecccccccccccCCcceEEeeec
Confidence            764432211      0111  011122111110  0000    1157889999999999999999999854

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=7.8e-23  Score=181.36  Aligned_cols=211  Identities=14%  Similarity=0.114  Sum_probs=166.4

Q ss_pred             eeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEE
Q psy4650          37 VDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQ  116 (381)
Q Consensus        37 ~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~  116 (381)
                      ..+.+.++ +.++++++.||+|++||+..........+.+|...+.++.|+|++.  ++++++.|+.+++|++.+++...
T Consensus       101 ~~v~~s~d-g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~s~~~d~~i~~~~~~~~~~~~  177 (337)
T d1gxra_         101 RSCKLLPD-GCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSK--VCFSCCSDGNIAVWDLHNQTLVR  177 (337)
T ss_dssp             EEEEECTT-SSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSS--EEEEEETTSCEEEEETTTTEEEE
T ss_pred             EEEEEcCC-CCEEEEeecccccccccccccccccccccccccccccccccccccc--ccccccccccccccccccccccc
Confidence            45667776 4689999999999999987666677788899999999999999776  89999999999999999999999


Q ss_pred             EeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCC-
Q psy4650         117 TLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKVGRE-  195 (381)
Q Consensus       117 ~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~~~~-  195 (381)
                      ...+|...|.+++|+|++..+++|+.|+.+++||+++++.+..+. +...|.+++|+|++..+++|+.||.+++|+... 
T Consensus       178 ~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~-~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~  256 (337)
T d1gxra_         178 QFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKP  256 (337)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSS
T ss_pred             cccccccccccccccccccccccccccccccccccccceeecccc-cccceEEEEEcccccccceecccccccccccccc
Confidence            999999999999999999999999999999999999999887765 678899999999999999999999999976321 


Q ss_pred             ---------------------CceEEEecCCCEEEEEecCceeecccccCC--ccccccCCceEEeeehHHHHHhccCC
Q psy4650         196 ---------------------EPAVSMDVNGCKIIWARHSEVQQANLKTMP--EVFENITAGVVLTLSVHVTIKYRLDI  251 (381)
Q Consensus       196 ---------------------~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~dg~~l~~~~~d~~~~~~d~  251 (381)
                                           ..+++-..++...+|+..............  ..++|+|+|++|++++.|+.+++|++
T Consensus       257 ~~~~~~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         257 DKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             CEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             ccccccccccccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence                                 111111112223344433322222221111  12578999999999999999999986

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=4.7e-22  Score=176.26  Aligned_cols=197  Identities=13%  Similarity=0.158  Sum_probs=163.0

Q ss_pred             eeeeecCCCceEEEEEecCCeEEEecCCCccc---eeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCC-
Q psy4650          37 VDITTNKDMIEYKISYQESSRVKAFNPIQVAT---LILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNK-  112 (381)
Q Consensus        37 ~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~---~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~-  112 (381)
                      .++.+.++ +.++++|+ ||.|++||+.....   .......+|.+.|.+++|+|++.  +|++|+.|++|++||+... 
T Consensus        55 ~~v~fs~~-g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~--~l~s~~~dg~i~iwd~~~~~  130 (337)
T d1gxra_          55 CAVTISNP-TRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGC--TLIVGGEASTLSIWDLAAPT  130 (337)
T ss_dssp             CEEEECSS-SSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSS--EEEEEESSSEEEEEECCCC-
T ss_pred             EEEEECCC-CCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCC--EEEEeecccccccccccccc
Confidence            45667776 57899987 78999999864321   22334568999999999999876  8999999999999998754 


Q ss_pred             -eEEEEeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCCCeEEEE
Q psy4650         113 -TCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLK  191 (381)
Q Consensus       113 -~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~  191 (381)
                       .....+..|...+.+++|+|++..+++++.|+.+++||+.+++.......|...+.+++|++++..+++++.||.+++ 
T Consensus       131 ~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i-  209 (337)
T d1gxra_         131 PRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRS-  209 (337)
T ss_dssp             -EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEE-
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-
Confidence             456778889999999999999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             ecCCCceEEEecCCCEEEEEecCceeecccccCCccccccCCceEEeeehHHHHHhccCCCcC
Q psy4650         192 VGREEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSVHVTIKYRLDISDS  254 (381)
Q Consensus       192 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~d~~~~~~d~~~~  254 (381)
                               ||..++..+.........       ..++++|++..++++..++....|++...
T Consensus       210 ---------~d~~~~~~~~~~~~~~~i-------~~l~~~~~~~~l~~~~~d~~i~i~d~~~~  256 (337)
T d1gxra_         210 ---------WDLREGRQLQQHDFTSQI-------FSLGYCPTGEWLAVGMESSNVEVLHVNKP  256 (337)
T ss_dssp             ---------EETTTTEEEEEEECSSCE-------EEEEECTTSSEEEEEETTSCEEEEETTSS
T ss_pred             ---------cccccceeecccccccce-------EEEEEcccccccceecccccccccccccc
Confidence                     777777766544322111       11467899999999999999999988654

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.89  E-value=5.9e-22  Score=174.61  Aligned_cols=144  Identities=18%  Similarity=0.245  Sum_probs=131.7

Q ss_pred             CCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEEEe--ccC
Q psy4650          44 DMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTL--EGH  121 (381)
Q Consensus        44 ~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~--~~~  121 (381)
                      ....++++++.|+.+++||+.+  ...+..+.+|.+.|.+++|+|++.  +|++|+.|+.|++||+........+  ..+
T Consensus       194 ~~~~~~~~~~~d~~v~i~d~~~--~~~~~~~~~h~~~i~~v~~~p~~~--~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~  269 (340)
T d1tbga_         194 PDTRLFVSGACDASAKLWDVRE--GMCRQTFTGHESDINAICFFPNGN--AFATGSDDATCRLFDLRADQELMTYSHDNI  269 (340)
T ss_dssp             TTSSEEEEEETTTEEEEEETTT--TEEEEEECCCSSCEEEEEECTTSS--EEEEEETTSCEEEEETTTTEEEEEECCTTC
T ss_pred             cccceeEEeecCceEEEEECCC--CcEEEEEeCCCCCeEEEEECCCCC--EEEEEeCCCeEEEEeecccccccccccccc
Confidence            3466889999999999999874  567788999999999999999776  8999999999999999998877665  456


Q ss_pred             CCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCCCeEEEE
Q psy4650         122 GQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLK  191 (381)
Q Consensus       122 ~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~  191 (381)
                      ..+|.+++|+|++.++++|+.||.|++||+.+++.+..+.+|...|++++|+|++.+|++|+.||.|++|
T Consensus       270 ~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iW  339 (340)
T d1tbga_         270 ICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW  339 (340)
T ss_dssp             CSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSCEEEE
T ss_pred             cCceEEEEECCCCCEEEEEECCCEEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEccCCEEEEe
Confidence            6789999999999999999999999999999999999999999999999999999999999999999995

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.89  E-value=1.1e-21  Score=170.43  Aligned_cols=192  Identities=16%  Similarity=0.246  Sum_probs=162.0

Q ss_pred             eeeecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEEE
Q psy4650          38 DITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQT  117 (381)
Q Consensus        38 ~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~  117 (381)
                      .+...++ ..++++++.|+.+++|+...  ...+..+.+|...+.+++|+|++.  ++++++.|+.|++|+..++.....
T Consensus       106 ~~~~~~~-~~~~~~~~~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~--~l~~~~~d~~v~~~~~~~~~~~~~  180 (317)
T d1vyhc1         106 SVSIMPN-GDHIVSASRDKTIKMWEVQT--GYCVKTFTGHREWVRMVRPNQDGT--LIASCSNDQTVRVWVVATKECKAE  180 (317)
T ss_dssp             EEEECSS-SSEEEEEETTSEEEEEETTT--CCEEEEEECCSSCEEEEEECTTSS--EEEEEETTSCEEEEETTTCCEEEE
T ss_pred             eeeccCC-CceEEeeccCcceeEeeccc--ceeeeEEccCCCcceeeecccCCC--EEEEEeCCCeEEEEeeccceeeEE
Confidence            3444554 55789999999999999874  456788899999999999999776  899999999999999999999999


Q ss_pred             eccCCCCEEEEEEecCC--------------------CEEEEEeCCCCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCC
Q psy4650         118 LEGHGQNISAVCFHPEL--------------------PIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSN  177 (381)
Q Consensus       118 ~~~~~~~v~~~~~~p~~--------------------~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~  177 (381)
                      +.+|...+.+++|+|++                    ..+++++.|+.|++||+.+++.+..+.+|...|.+++|+|+++
T Consensus       181 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  260 (317)
T d1vyhc1         181 LREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGK  260 (317)
T ss_dssp             ECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSS
T ss_pred             EecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeCCCCCEEEEEECCCCC
Confidence            99999999999998764                    3688999999999999999999999999999999999999999


Q ss_pred             EEEEEeCCCeEEEEecCCCceEEEecCCCEEEEEecCceeecccccCCccccccCCceEEeeehHHHHHhccC
Q psy4650         178 NVAIGYDEGSVLLKVGREEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSVHVTIKYRLD  250 (381)
Q Consensus       178 ~l~~~~~dg~v~i~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~d~~~~~~d  250 (381)
                      +|++|+.||.+++          ||..+++++..+..+..  .+.    .++|+|++.+|++++.|+.+++||
T Consensus       261 ~l~s~~~dg~i~i----------wd~~~~~~~~~~~~h~~--~V~----~~~~s~~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         261 FILSCADDKTLRV----------WDYKNKRCMKTLNAHEH--FVT----SLDFHKTAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             CEEEEETTTEEEE----------ECCTTSCCCEEEECCSS--CEE----EEEECSSSSCEEEEETTSEEEEEC
T ss_pred             EEEEEECCCeEEE----------EECCCCcEEEEEcCCCC--CEE----EEEEcCCCCEEEEEeCCCeEEEeC
Confidence            9999999999999          66666655544432211  111    156789999999999998888885

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.89  E-value=8.2e-22  Score=178.56  Aligned_cols=181  Identities=12%  Similarity=0.109  Sum_probs=143.5

Q ss_pred             ceEEEEEecCCeEEEecCCCccc----------------eeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEEC
Q psy4650          46 IEYKISYQESSRVKAFNPIQVAT----------------LILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDY  109 (381)
Q Consensus        46 ~~~~~s~~~d~~v~i~~~~~~~~----------------~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~  109 (381)
                      ..++++++.||++++|++.....                ........+...+.+++|+|++   +|++|+.|++|++||+
T Consensus       136 ~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg---~lasgs~Dg~i~iwd~  212 (393)
T d1sq9a_         136 SHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG---LIATGFNNGTVQISEL  212 (393)
T ss_dssp             CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS---EEEEECTTSEEEEEET
T ss_pred             ccEEEEEcCCCcEEEEEeecCCcccceeeeeeccceecccceecccCCCCcEEEEEECCCC---EEEEEeCCCcEEEEee
Confidence            57899999999999998632110                0112223456678999999875   6999999999999999


Q ss_pred             CCCeEEEEe------ccCCCCEEEEEEecCCCEEEEEeCCCC---EEEEeCCCCeeeEEEe-------------cCCcce
Q psy4650         110 QNKTCVQTL------EGHGQNISAVCFHPELPIVITGSEDGS---VRVWHSGTHRLEISLT-------------YGLERV  167 (381)
Q Consensus       110 ~~~~~~~~~------~~~~~~v~~~~~~p~~~~l~s~~~d~~---i~vwd~~~~~~~~~~~-------------~~~~~v  167 (381)
                      .+++++..+      .+|..+|.+++|+|+|.+|++|+.|++   |++||+.++..+..+.             +|...|
T Consensus       213 ~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V  292 (393)
T d1sq9a_         213 STLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWV  292 (393)
T ss_dssp             TTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCE
T ss_pred             cccccccccccccccccccceEEEcccccccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCce
Confidence            999876544      568999999999999999999999875   8999999998887774             688999


Q ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEecCCCceEEEecCCCEEEEEecCceeecccccCCccccccCCceEEeeeh
Q psy4650         168 WTISSLKGSNNVAIGYDEGSVLLKVGREEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSV  241 (381)
Q Consensus       168 ~~v~~~~~~~~l~~~~~dg~v~i~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~  241 (381)
                      ++++|+|++++|++|+.|+.|++          ||..++.++..+..+........  ....|+|+|..++.+.
T Consensus       293 ~~l~fspd~~~l~S~s~D~~v~v----------Wd~~~g~~~~~l~gH~~~v~~~~--~~~~~~~~~~~~~~~~  354 (393)
T d1sq9a_         293 MSLSFNDSGETLCSAGWDGKLRF----------WDVKTKERITTLNMHCDDIEIEE--DILAVDEHGDSLAEPG  354 (393)
T ss_dssp             EEEEECSSSSEEEEEETTSEEEE----------EETTTTEEEEEEECCGGGCSSGG--GCCCBCTTSCBCSSCC
T ss_pred             eeeccCCCCCeeEEECCCCEEEE----------EECCCCCEEEEECCcCCcccCCc--cEEEECCCCCEEEEcc
Confidence            99999999999999999999999          99999998888765443332222  1246778887776554

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.88  E-value=4.4e-21  Score=166.65  Aligned_cols=212  Identities=18%  Similarity=0.273  Sum_probs=170.7

Q ss_pred             eeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEE
Q psy4650          37 VDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQ  116 (381)
Q Consensus        37 ~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~  116 (381)
                      .++.++++ +.++++|+.||+|++||+..  ...+.++++|.+.|.++.|+|++.  ++++++.++.+.+|+........
T Consensus        21 ~~l~~sp~-~~~l~s~s~Dg~i~iWd~~~--~~~~~~~~~h~~~V~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~   95 (317)
T d1vyhc1          21 TRVIFHPV-FSVMVSASEDATIKVWDYET--GDFERTLKGHTDSVQDISFDHSGK--LLASCSADMTIKLWDFQGFECIR   95 (317)
T ss_dssp             EEEEECSS-SSEEEEEESSSCEEEEETTT--CCCCEEECCCSSCEEEEEECTTSS--EEEEEETTSCCCEEETTSSCEEE
T ss_pred             EEEEEcCC-CCEEEEEeCCCeEEEEECCC--CCEEEEEeCCCCcEEEEeeecccc--ccccccccccccccccccccccc
Confidence            46667776 56999999999999999874  456788999999999999999776  89999999999999999998888


Q ss_pred             EeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCC
Q psy4650         117 TLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKVGREE  196 (381)
Q Consensus       117 ~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~~~~~  196 (381)
                      .+.+|...+.++.|+|++..+++++.|+.+++||+.++.....+.+|...+.+++|+|++.++++++.||.+++|.....
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~  175 (317)
T d1vyhc1          96 TMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATK  175 (317)
T ss_dssp             CCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC
T ss_pred             ccccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCCcceeeecccCCCEEEEEeCCCeEEEEeeccc
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999874321


Q ss_pred             ce-EEE------------------------------------------ecCCCEEEEEecCceeecccccCCc---cccc
Q psy4650         197 PA-VSM------------------------------------------DVNGCKIIWARHSEVQQANLKTMPE---VFEN  230 (381)
Q Consensus       197 ~~-~~~------------------------------------------d~~~~~~~~~~~~~~~~~~~~~~~~---~~~~  230 (381)
                      .. ..+                                          ..++...+|..........+.++..   .+.+
T Consensus       176 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~~~~  255 (317)
T d1vyhc1         176 ECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLF  255 (317)
T ss_dssp             CEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEE
T ss_pred             eeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeCCCCCEEEEEE
Confidence            11 100                                          0111122333333322222222221   1577


Q ss_pred             cCCceEEeeehHHHHHhccCCCc
Q psy4650         231 ITAGVVLTLSVHVTIKYRLDISD  253 (381)
Q Consensus       231 ~~dg~~l~~~~~d~~~~~~d~~~  253 (381)
                      +|+|.++++++.++..++||+..
T Consensus       256 ~~~~~~l~s~~~dg~i~iwd~~~  278 (317)
T d1vyhc1         256 HSGGKFILSCADDKTLRVWDYKN  278 (317)
T ss_dssp             CSSSSCEEEEETTTEEEEECCTT
T ss_pred             CCCCCEEEEEECCCeEEEEECCC
Confidence            89999999999999999998864

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.88  E-value=1.5e-21  Score=175.32  Aligned_cols=187  Identities=13%  Similarity=0.154  Sum_probs=148.7

Q ss_pred             eeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCe---
Q psy4650          37 VDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKT---  113 (381)
Q Consensus        37 ~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~---  113 (381)
                      ..+.+.++ +.++++++.|++|++|++..........+.+|...|.++.|+|++.  .|++|+.|+++++|++....   
T Consensus        55 ~~l~fsp~-~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~~~--~l~~~s~d~~i~i~~~~~~~~~~  131 (371)
T d1k8kc_          55 TGVDWAPD-SNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEK--KFAVGSGSRVISICYFEQENDWW  131 (371)
T ss_dssp             EEEEEETT-TTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSS--EEEEEETTSSEEEEEEETTTTEE
T ss_pred             EEEEECCC-CCEEEEEECCCeEEEEeecccccccccccccccccccccccccccc--cceeecccCcceeeeeecccccc
Confidence            56667776 5689999999999999997655555667789999999999999876  89999999999999887653   


Q ss_pred             -EEEEeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCC------------------eeeEEEecCCcceEEEEEcC
Q psy4650         114 -CVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTH------------------RLEISLTYGLERVWTISSLK  174 (381)
Q Consensus       114 -~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~------------------~~~~~~~~~~~~v~~v~~~~  174 (381)
                       .......|...|.+++|+|++.++++|+.|+++++||...+                  ........|...|.+++|+|
T Consensus       132 ~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  211 (371)
T d1k8kc_         132 VCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSA  211 (371)
T ss_dssp             EEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECS
T ss_pred             cccccccccccccccccccccccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeec
Confidence             23445678899999999999999999999999999998643                  34555667888999999999


Q ss_pred             CCCEEEEEeCCCeEEEEecCCCceEEEecCCCEEEEEecCceeecccccCCccccccCCceEEeeehH
Q psy4650         175 GSNNVAIGYDEGSVLLKVGREEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSVH  242 (381)
Q Consensus       175 ~~~~l~~~~~dg~v~i~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~  242 (381)
                      +|+.+++++.||.+++          ||..++..+.....+..  .+.    .++|+|||.+++.+.+
T Consensus       212 ~g~~l~s~~~d~~i~i----------wd~~~~~~~~~~~~~~~--~v~----s~~fs~d~~~la~g~d  263 (371)
T d1k8kc_         212 NGSRVAWVSHDSTVCL----------ADADKKMAVATLASETL--PLL----AVTFITESSLVAAGHD  263 (371)
T ss_dssp             SSSEEEEEETTTEEEE----------EEGGGTTEEEEEECSSC--CEE----EEEEEETTEEEEEETT
T ss_pred             ccccccccccCCcceE----------Eeeecccceeeeecccc--cce----eeeecCCCCEEEEEcC
Confidence            9999999999999999          66665555544433211  111    1567899999887764

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.88  E-value=5.1e-21  Score=172.25  Aligned_cols=209  Identities=21%  Similarity=0.258  Sum_probs=159.8

Q ss_pred             eeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEE
Q psy4650          37 VDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQ  116 (381)
Q Consensus        37 ~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~  116 (381)
                      ..+.+.++ +.++++|+.||+|++|+...  ...+..+.+|.+.|.++.+++++.  .+++|+.++.+++||..+.....
T Consensus       125 ~~l~~s~~-~~~l~s~~~dg~v~i~~~~~--~~~~~~~~~h~~~v~~~~~~~~~~--~~~~~~~~~~i~~~d~~~~~~~~  199 (388)
T d1erja_         125 RSVCFSPD-GKFLATGAEDRLIRIWDIEN--RKIVMILQGHEQDIYSLDYFPSGD--KLVSGSGDRTVRIWDLRTGQCSL  199 (388)
T ss_dssp             EEEEECTT-SSEEEEEETTSCEEEEETTT--TEEEEEECCCSSCEEEEEECTTSS--EEEEEETTSEEEEEETTTTEEEE
T ss_pred             EEEEECCC-CCcceecccccccccccccc--cccccccccccccccccccccccc--cccccccceeeeeeecccccccc
Confidence            45666766 66999999999999999874  556778899999999999999766  79999999999999999998877


Q ss_pred             EeccCCCCEEEEEEec-CCCEEEEEeCCCCEEEEeCCCCeeeEEEe-------cCCcceEEEEEcCCCCEEEEEeCCCeE
Q psy4650         117 TLEGHGQNISAVCFHP-ELPIVITGSEDGSVRVWHSGTHRLEISLT-------YGLERVWTISSLKGSNNVAIGYDEGSV  188 (381)
Q Consensus       117 ~~~~~~~~v~~~~~~p-~~~~l~s~~~d~~i~vwd~~~~~~~~~~~-------~~~~~v~~v~~~~~~~~l~~~~~dg~v  188 (381)
                      ....+... .++.++| ++.++++|+.|+.|++||..++.....+.       +|...|.+++|+|++.++++|+.||.+
T Consensus       200 ~~~~~~~~-~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i  278 (388)
T d1erja_         200 TLSIEDGV-TTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSV  278 (388)
T ss_dssp             EEECSSCE-EEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred             cccccccc-ccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcE
Confidence            77755544 5555554 78899999999999999999988776553       467889999999999999999999999


Q ss_pred             EEEec--------------------------------------------CCCceEEEecCCCEEEEEecCceee-ccccc
Q psy4650         189 LLKVG--------------------------------------------REEPAVSMDVNGCKIIWARHSEVQQ-ANLKT  223 (381)
Q Consensus       189 ~i~~~--------------------------------------------~~~~~~~~d~~~~~~~~~~~~~~~~-~~~~~  223 (381)
                      ++|+-                                            .++.+..||..++.++..+..+... ..+..
T Consensus       279 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~~V~~~~~  358 (388)
T d1erja_         279 KLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAV  358 (388)
T ss_dssp             EEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE
T ss_pred             EEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEeCCCCCEEEEEE
Confidence            99862                                            1233444554444444433322111 11111


Q ss_pred             CCccccccCCceEEeeehHHHHHhccCCC
Q psy4650         224 MPEVFENITAGVVLTLSVHVTIKYRLDIS  252 (381)
Q Consensus       224 ~~~~~~~~~dg~~l~~~~~d~~~~~~d~~  252 (381)
                      . ....|+|++.++++++.|+.+++|+++
T Consensus       359 ~-~~~~~spd~~~l~s~s~Dg~I~iW~~~  386 (388)
T d1erja_         359 A-NGSSLGPEYNVFATGSGDCKARIWKYK  386 (388)
T ss_dssp             C-SSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred             e-cCcccCCCCCEEEEEeCCCEEEEEeee
Confidence            1 114678999999999999999999874

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.86  E-value=2.6e-20  Score=167.59  Aligned_cols=203  Identities=20%  Similarity=0.260  Sum_probs=155.4

Q ss_pred             eeeeecCCCceEEEEEecCCeEEEecCCCccceeeEee------------------ccccccEEEEEeeeCCCccEEEEE
Q psy4650          37 VDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTL------------------YGHEKGVNCVDYYHGGDKPYLISG   98 (381)
Q Consensus        37 ~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l------------------~~h~~~v~~~~~~~~~~~~~l~s~   98 (381)
                      .++.++++ +.+|++|+ |++|++|++.+.  ..+..+                  .+|...|.+++|+|++.  +|++|
T Consensus        66 ~~l~fs~d-g~~lasg~-d~~i~iW~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~--~l~s~  139 (388)
T d1erja_          66 CCVKFSND-GEYLATGC-NKTTQVYRVSDG--SLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGK--FLATG  139 (388)
T ss_dssp             CEEEECTT-SSEEEEEC-BSCEEEEETTTC--CEEEEECC-----------------CCCCBEEEEEECTTSS--EEEEE
T ss_pred             EEEEECCC-CCEEEEEe-CCeEEEEEeccc--ceEeeecccccccccccccccccccCCCCCEEEEEECCCCC--cceec
Confidence            46667776 56888886 889999998642  222222                  35778899999999876  89999


Q ss_pred             cCCCeEEEEECCCCeEEEEeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCE
Q psy4650          99 ADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNN  178 (381)
Q Consensus        99 ~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~  178 (381)
                      +.||+|++||...++....+.+|...|.++.|++++..+++++.++.+++||..+.........+...+....+.+++.+
T Consensus       140 ~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (388)
T d1erja_         140 AEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKY  219 (388)
T ss_dssp             ETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCE
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccceeeeeeeccccccccccccccccccccccCCCCCe
Confidence            99999999999999999999999999999999999999999999999999999999888877766555555555557899


Q ss_pred             EEEEeCCCeEEEEecCCCceEEEecCCCEEEEEecCceeeccc-ccCCccccccCCceEEeeehHHHHHhccCCCcCh
Q psy4650         179 VAIGYDEGSVLLKVGREEPAVSMDVNGCKIIWARHSEVQQANL-KTMPEVFENITAGVVLTLSVHVTIKYRLDISDSH  255 (381)
Q Consensus       179 l~~~~~dg~v~i~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~d~~~~~~d~~~~~  255 (381)
                      +++|+.||.+++          ||..++............... .+....++|+|+|..+++++.++....|++....
T Consensus       220 l~~~~~d~~i~i----------~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~  287 (388)
T d1erja_         220 IAAGSLDRAVRV----------WDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNAN  287 (388)
T ss_dssp             EEEEETTSCEEE----------EETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC----
T ss_pred             EEEEcCCCeEEE----------eecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCc
Confidence            999999999999          777666666554332211110 0111125788999999999999999999986543

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.86  E-value=2.5e-20  Score=164.23  Aligned_cols=202  Identities=12%  Similarity=0.074  Sum_probs=155.7

Q ss_pred             ceeeeecC-CCceEEEEEecCCeEEEecCCCcc------ceeeEeeccccccEEEEEeeeCCCccEEEEE--cCCCeEEE
Q psy4650          36 KVDITTNK-DMIEYKISYQESSRVKAFNPIQVA------TLILKTLYGHEKGVNCVDYYHGGDKPYLISG--ADDRLVKI  106 (381)
Q Consensus        36 ~~~i~~~~-~~~~~~~s~~~d~~v~i~~~~~~~------~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~--~~d~~v~v  106 (381)
                      ...+.+.| ..+.++++|+.||+|++||.....      ......+..|.++|.+++|++++.  +++++  +.++.+++
T Consensus        66 v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~--~l~~~~~~~~~~~~~  143 (325)
T d1pgua1          66 VTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGR--RLCVVGEGRDNFGVF  143 (325)
T ss_dssp             EEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSS--EEEEEECCSSCSEEE
T ss_pred             EEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCC--ccceeeccccceEEE
Confidence            34566665 346799999999999999985322      112234567899999999999887  55544  45788999


Q ss_pred             EECCCCeEEEEeccCCCCEEEEEEecCCC-EEEEEeCCCCEEEEeCCCCeeeEEEe---cCCcceEEEEEcCC-CCEEEE
Q psy4650         107 WDYQNKTCVQTLEGHGQNISAVCFHPELP-IVITGSEDGSVRVWHSGTHRLEISLT---YGLERVWTISSLKG-SNNVAI  181 (381)
Q Consensus       107 wd~~~~~~~~~~~~~~~~v~~~~~~p~~~-~l~s~~~d~~i~vwd~~~~~~~~~~~---~~~~~v~~v~~~~~-~~~l~~  181 (381)
                      |+..+++.+..+.+|...|.+++|+|++. .+++++.|+.+++||..+++....+.   .+...|.+++|+|+ +.++++
T Consensus       144 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s  223 (325)
T d1pgua1         144 ISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVIT  223 (325)
T ss_dssp             EETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEE
T ss_pred             EeecccccceeeeecccccccccccccccceEEEeecccccccccccccccceecccccCCCCccEEeeeccccceeccc
Confidence            99999999999999999999999999987 47789999999999999888776654   35677999999996 688999


Q ss_pred             EeCCCeEEEEecCCCceEEEecCCCEEEEEecCceeecccccCCcccc-ccCCceEEeeehHHHHHhccCCCc
Q psy4650         182 GYDEGSVLLKVGREEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFE-NITAGVVLTLSVHVTIKYRLDISD  253 (381)
Q Consensus       182 ~~~dg~v~i~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~dg~~l~~~~~d~~~~~~d~~~  253 (381)
                      ++.||.+++          ||..++..+..+..+..  ...+..  +. ..|||..+++++.|+..++||+..
T Consensus       224 ~~~d~~i~i----------wd~~~~~~~~~l~~~~~--~v~~~~--~s~~~~dg~~l~s~s~D~~i~iwd~~~  282 (325)
T d1pgua1         224 VGSDRKISC----------FDGKSGEFLKYIEDDQE--PVQGGI--FALSWLDSQKFATVGADATIRVWDVTT  282 (325)
T ss_dssp             EETTCCEEE----------EETTTCCEEEECCBTTB--CCCSCE--EEEEESSSSEEEEEETTSEEEEEETTT
T ss_pred             cccccceee----------eeecccccccccccccc--ccccce--eeeeccCCCEEEEEeCCCeEEEEECCC
Confidence            999999999          77777766655443211  111111  11 127899999999999999999864

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.85  E-value=6e-20  Score=161.77  Aligned_cols=199  Identities=13%  Similarity=0.020  Sum_probs=148.6

Q ss_pred             eeeeecCCCceEEEEE-ecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEE
Q psy4650          37 VDITTNKDMIEYKISY-QESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCV  115 (381)
Q Consensus        37 ~~i~~~~~~~~~~~s~-~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~  115 (381)
                      .++.+.+++..+++.+ +.++.+++|+..  ....+..+.+|...|.+++|+|++.. .+++++.|+.+++||..+.+..
T Consensus       119 ~~v~~s~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~-~~~~~~~d~~v~~~d~~~~~~~  195 (325)
T d1pgua1         119 SDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQRINACHLKQSRPM-RSMTVGDDGSVVFYQGPPFKFS  195 (325)
T ss_dssp             EEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEEECCSCSSCEEEEEECSSSSC-EEEEEETTTEEEEEETTTBEEE
T ss_pred             EEEEECCCCCccceeeccccceEEEEeec--ccccceeeeecccccccccccccccc-eEEEeecccccccccccccccc
Confidence            3566666644433332 346788899876  34567889999999999999998763 6789999999999999888765


Q ss_pred             EEe---ccCCCCEEEEEEecC-CCEEEEEeCCCCEEEEeCCCCeeeEEEecCCcceEEEEEc---CCCCEEEEEeCCCeE
Q psy4650         116 QTL---EGHGQNISAVCFHPE-LPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSL---KGSNNVAIGYDEGSV  188 (381)
Q Consensus       116 ~~~---~~~~~~v~~~~~~p~-~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~---~~~~~l~~~~~dg~v  188 (381)
                      ..+   .+|...|.+++|+|+ +.++++++.|+.|++||+.+++.+..+.+|...+..+.|+   |+|.+|++++.|+.+
T Consensus       196 ~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i  275 (325)
T d1pgua1         196 ASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATI  275 (325)
T ss_dssp             EEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEE
T ss_pred             eecccccCCCCccEEeeeccccceeccccccccceeeeeeccccccccccccccccccceeeeeccCCCEEEEEeCCCeE
Confidence            554   456788999999996 5789999999999999999999999999888877666555   788999999999999


Q ss_pred             EEEecCCCceEEEecCCCEEEEEecCceeecccccCCccccccCCceEEeeehHHHHHhccCC
Q psy4650         189 LLKVGREEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSVHVTIKYRLDI  251 (381)
Q Consensus       189 ~i~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~d~~~~~~d~  251 (381)
                      ++          ||..++.++.....+..........  +.+.++ ..+++++.|+.+++||+
T Consensus       276 ~i----------wd~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         276 RV----------WDVTTSKCVQKWTLDKQQLGNQQVG--VVATGN-GRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             EE----------EETTTTEEEEEEECCTTCGGGCEEE--EEEEET-TEEEEEETTSCEEEEET
T ss_pred             EE----------EECCCCCEEEEEEecCCcccCeEEE--EEECCC-CEEEEEECCCEEEEEEC
Confidence            99          8888787765443322211111111  222333 35677888888888874

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=1.4e-19  Score=158.97  Aligned_cols=196  Identities=20%  Similarity=0.254  Sum_probs=141.8

Q ss_pred             ceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCe------------
Q psy4650          46 IEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKT------------  113 (381)
Q Consensus        46 ~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~------------  113 (381)
                      +.++++|+.||+|++||+..  ..+++++.+|.+.|.+++|+|  +  +|++|+.|+++++|+.....            
T Consensus        27 g~~l~sgs~Dg~i~vWd~~~--~~~~~~~~~h~~~V~~v~~~~--~--~l~s~s~D~~~~~~~~~~~~~~~~~~~~~~~~  100 (342)
T d2ovrb2          27 GNRIVSGSDDNTLKVWSAVT--GKCLRTLVGHTGGVWSSQMRD--N--IIISGSTDRTLKVWNAETGECIHTLYGHTSTV  100 (342)
T ss_dssp             TTEEEEEETTSCEEEEETTT--CCEEEECCCCSSCEEEEEEET--T--EEEEEETTSCEEEEETTTTEEEEEECCCSSCE
T ss_pred             CCEEEEEeCCCeEEEEECCC--CCEEEEEeCCCCCEEEEEeCC--C--ccccceecccccccccccccceecccccceeE
Confidence            45899999999999999874  567789999999999999986  3  79999999999999875421            


Q ss_pred             --------------------------------------------------------------------EEEEeccCCCCE
Q psy4650         114 --------------------------------------------------------------------CVQTLEGHGQNI  125 (381)
Q Consensus       114 --------------------------------------------------------------------~~~~~~~~~~~v  125 (381)
                                                                                          .+..+.+|...+
T Consensus       101 ~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~  180 (342)
T d2ovrb2         101 RCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRV  180 (342)
T ss_dssp             EEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCE
T ss_pred             eeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCCeEEEeecccceeeEEEcCccccc
Confidence                                                                                112233344333


Q ss_pred             EEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCCCeEEEEec------------
Q psy4650         126 SAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKVG------------  193 (381)
Q Consensus       126 ~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~~------------  193 (381)
                        ..+.+++..+++|+.||.|++||+..++.+..+..|...+.++.+++  .++++|+.||.+++|+.            
T Consensus       181 --~~~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~--~~l~s~s~d~~i~iwd~~~~~~~~~~~~~  256 (342)
T d2ovrb2         181 --YSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD--NILVSGNADSTVKIWDIKTGQCLQTLQGP  256 (342)
T ss_dssp             --EEEEECSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEET--TEEEEEETTSCEEEEETTTCCEEEEECST
T ss_pred             --ccccCCCCEEEEEeCCCeEEEeecccceeeeEecccccceeEEecCC--CEEEEEcCCCEEEEEeccccccccccccc
Confidence              34456788999999999999999999999999999999998887765  59999999999999862            


Q ss_pred             ---------------------CCCceEEEecCCCEEEEEecCceeecccccCCccccccCCceEEeeehHHHH----Hhc
Q psy4650         194 ---------------------REEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSVHVTI----KYR  248 (381)
Q Consensus       194 ---------------------~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~d~~----~~~  248 (381)
                                           .++.+..||..++..+........... .+.-..++|+|++.++++++.++.    ...
T Consensus       257 ~~~~~~~~~~~~~~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~-~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~  335 (342)
T d2ovrb2         257 NKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGS-GGVVWRIRASNTKLVCAVGSRNGTEETKLLV  335 (342)
T ss_dssp             TSCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGG-TCEEEEEEECSSEEEEEEECSSSSSCCEEEE
T ss_pred             ceeeeceeecccCCCeeEEEcCCCEEEEEECCCCCEEEEEecccCCCC-CCCEEEEEECCCCCEEEEEeCCCCCeeEEEE
Confidence                                 234444555555444433221100000 001112678999999999988874    556


Q ss_pred             cCCC
Q psy4650         249 LDIS  252 (381)
Q Consensus       249 ~d~~  252 (381)
                      ||+.
T Consensus       336 ~Df~  339 (342)
T d2ovrb2         336 LDFD  339 (342)
T ss_dssp             EECC
T ss_pred             EeCC
Confidence            7664

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.84  E-value=6.8e-20  Score=165.76  Aligned_cols=142  Identities=11%  Similarity=0.189  Sum_probs=115.5

Q ss_pred             eeeeecCCCceEEEEEecCCeEEEecCCCccce----eeEeeccccccEEEEEeeeCCCccEEEEEcCCCe---EEEEEC
Q psy4650          37 VDITTNKDMIEYKISYQESSRVKAFNPIQVATL----ILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRL---VKIWDY  109 (381)
Q Consensus        37 ~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~----~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~---v~vwd~  109 (381)
                      ..+...+++  ++++|+.|++|++||+......    ....+.+|..+|.+++|+|++.  +|++|+.|++   |++||+
T Consensus       188 ~~v~~s~dg--~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~--~l~sgs~D~t~~~i~lwd~  263 (393)
T d1sq9a_         188 TSVDISERG--LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGS--LLAIAHDSNSFGCITLYET  263 (393)
T ss_dssp             CEEEECTTS--EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTT--EEEEEEEETTEEEEEEEET
T ss_pred             EEEEECCCC--EEEEEeCCCcEEEEeecccccccccccccccccccceEEEcccccccc--eeeeecCCCCcceeeeccc
Confidence            345555653  8899999999999998753221    1234668999999999999887  8999998874   899999


Q ss_pred             CCCeEEEEec-------------cCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEecCCcceE----EEEE
Q psy4650         110 QNKTCVQTLE-------------GHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVW----TISS  172 (381)
Q Consensus       110 ~~~~~~~~~~-------------~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~----~v~~  172 (381)
                      .++..+..+.             +|.+.|.+++|+|++++|++|+.|++|++||+.+|+++.++.+|.+.|.    .++|
T Consensus       264 ~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~~~~l~gH~~~v~~~~~~~~~  343 (393)
T d1sq9a_         264 EFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAV  343 (393)
T ss_dssp             TTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCB
T ss_pred             ccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCCCEEEEECCcCCcccCCccEEEE
Confidence            9988777653             7999999999999999999999999999999999999999999987765    4677


Q ss_pred             cCCCCEEEEE
Q psy4650         173 LKGSNNVAIG  182 (381)
Q Consensus       173 ~~~~~~l~~~  182 (381)
                      .|++..++++
T Consensus       344 ~~~~~~~~~~  353 (393)
T d1sq9a_         344 DEHGDSLAEP  353 (393)
T ss_dssp             CTTSCBCSSC
T ss_pred             CCCCCEEEEc
Confidence            7777766543

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.84  E-value=1.6e-19  Score=156.63  Aligned_cols=196  Identities=10%  Similarity=0.058  Sum_probs=146.1

Q ss_pred             eeeeecCCCceEEEEEecCCeEEEecCCCccceeeEee-ccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCe--
Q psy4650          37 VDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTL-YGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKT--  113 (381)
Q Consensus        37 ~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l-~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~--  113 (381)
                      .++.+.++ +.++++|+.||+|++||+..  ...+..+ .+|...|.+++|+|++.   +++++.|+.+++|+.....  
T Consensus        16 ~~l~~s~d-g~~l~s~s~Dg~v~vWd~~~--~~~~~~~~~~h~~~v~~v~~~~~g~---~~~~~~d~~v~~~~~~~~~~~   89 (299)
T d1nr0a2          16 TALSSSAD-GKTLFSADAEGHINSWDIST--GISNRVFPDVHATMITGIKTTSKGD---LFTVSWDDHLKVVPAGGSGVD   89 (299)
T ss_dssp             EEEEECTT-SSEEEEEETTSCEEEEETTT--CCEEECSSCSCSSCEEEEEECTTSC---EEEEETTTEEEEECSSSSSSC
T ss_pred             EEEEECCC-CCEEEEEcCCCeEEEEECCC--CcEEEEEcCCCCCcEEEEEeeccce---eecccceeeEEEeccCCcccc
Confidence            45667776 56999999999999999864  3444555 47999999999999875   6777889999999864310  


Q ss_pred             ------------E-------------------EEEe-------ccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCe
Q psy4650         114 ------------C-------------------VQTL-------EGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHR  155 (381)
Q Consensus       114 ------------~-------------------~~~~-------~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~  155 (381)
                                  .                   +..+       ......+.+++|+|++..+++|+.|+.+++||+.+++
T Consensus        90 ~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~  169 (299)
T d1nr0a2          90 SSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGAS  169 (299)
T ss_dssp             TTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence                        0                   0000       0123356889999999999999999999999998887


Q ss_pred             eeE-EEecCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCceEEEecCCCEEEEEecCceeecccccCC---cccccc
Q psy4650         156 LEI-SLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKVGREEPAVSMDVNGCKIIWARHSEVQQANLKTMP---EVFENI  231 (381)
Q Consensus       156 ~~~-~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~  231 (381)
                      ... ....|...|.+++|+|++.++++++.||.+++          ||..++.......      .+.++.   ..++|+
T Consensus       170 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~----------~~~~~~~~~~~~~------~~~~h~~~v~~l~~s  233 (299)
T d1nr0a2         170 VSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIP----------YSVANNFELAHTN------SWTFHTAKVACVSWS  233 (299)
T ss_dssp             EEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEE----------EEGGGTTEESCCC------CCCCCSSCEEEEEEC
T ss_pred             cccccccccccccccccccccccccccccccccccc----------ccccccccccccc------ccccccccccccccc
Confidence            654 34568899999999999999999999999999          5554433221111      111111   115788


Q ss_pred             CCceEEeeehHHHHHhccCCCcC
Q psy4650         232 TAGVVLTLSVHVTIKYRLDISDS  254 (381)
Q Consensus       232 ~dg~~l~~~~~d~~~~~~d~~~~  254 (381)
                      |+|.++++++.|+..+.|++...
T Consensus       234 ~~~~~l~sgs~dg~i~iwd~~~~  256 (299)
T d1nr0a2         234 PDNVRLATGSLDNSVIVWNMNKP  256 (299)
T ss_dssp             TTSSEEEEEETTSCEEEEETTCT
T ss_pred             ccccceEEEcCCCEEEEEECCCC
Confidence            99999999999999999998653

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.82  E-value=3.2e-19  Score=157.34  Aligned_cols=184  Identities=23%  Similarity=0.376  Sum_probs=142.3

Q ss_pred             ceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeE-----------
Q psy4650          46 IEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTC-----------  114 (381)
Q Consensus        46 ~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~-----------  114 (381)
                      ++++++|+.||+|++||+.  ....+.++++|.++|.+++|+|++   +|++|+.|++|++|+......           
T Consensus        23 ~~~l~tgs~Dg~i~vWd~~--~~~~~~~l~~H~~~V~~l~~s~~~---~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~   97 (355)
T d1nexb2          23 DNYVITGADDKMIRVYDSI--NKKFLLQLSGHDGGVWALKYAHGG---ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTV   97 (355)
T ss_dssp             TTEEEEEETTTEEEEEETT--TTEEEEEEECCSSCEEEEEEETTT---EEEEEETTCCEEEEETTTTEEEEEECCCSSCE
T ss_pred             CCEEEEEeCCCeEEEEECC--CCcEEEEEECCCCCEEEEEEcCCC---EEEEEecccccccccccccccccccccccccc
Confidence            4599999999999999987  356788999999999999998743   688888898888888754110           


Q ss_pred             --------------------------------------------------------------------------------
Q psy4650         115 --------------------------------------------------------------------------------  114 (381)
Q Consensus       115 --------------------------------------------------------------------------------  114 (381)
                                                                                                      
T Consensus        98 ~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  177 (355)
T d1nexb2          98 RCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSG  177 (355)
T ss_dssp             EEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEEEEEETTEEEEE
T ss_pred             cccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeeccccccccccccceeeee
Confidence                                                                                            


Q ss_pred             ----------------EEEeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCE
Q psy4650         115 ----------------VQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNN  178 (381)
Q Consensus       115 ----------------~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~  178 (381)
                                      +....++...+.++.|+|++..+++++.|+.|++||..++..+..+.+|...|.++.+++  ++
T Consensus       178 ~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~~~--~~  255 (355)
T d1nexb2         178 SYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSD--KF  255 (355)
T ss_dssp             ETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEECCCSSCCCEEEECS--SE
T ss_pred             cccceeeeeecccccceeeeeccccccccccccccceeeecccccceEEeeecccccccccccccccccccccccc--ce
Confidence                            111223445667788999999999999999999999999999999999999999999874  68


Q ss_pred             EEEEeCCCeEEEEecCCCceEEEecCCCEEEEEecCceeecccccCCccccccCCceEEeeehHHHHHhccCCCcC
Q psy4650         179 VAIGYDEGSVLLKVGREEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSVHVTIKYRLDISDS  254 (381)
Q Consensus       179 l~~~~~dg~v~i~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~d~~~~~~d~~~~  254 (381)
                      +++|+.||.+++          ||..++.........    .....   ..+.+++.+++.++ |+..++||+...
T Consensus       256 l~~~~~dg~i~i----------wd~~~~~~~~~~~~~----~~~~~---~~~~~~~~~l~~g~-d~~i~vwd~~tg  313 (355)
T d1nexb2         256 LVSAAADGSIRG----------WDANDYSRKFSYHHT----NLSAI---TTFYVSDNILVSGS-ENQFNIYNLRSG  313 (355)
T ss_dssp             EEEECTTSEEEE----------EETTTCCEEEEEECT----TCCCC---CEEEECSSEEEEEE-TTEEEEEETTTC
T ss_pred             eeeeeccccccc----------ccccccceecccccC----CceEE---EEEcCCCCEEEEEe-CCEEEEEECCCC
Confidence            999999999999          676666554443221    11111   23456777777665 678889998654

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=5.5e-19  Score=151.49  Aligned_cols=138  Identities=20%  Similarity=0.331  Sum_probs=111.8

Q ss_pred             ceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEE---------
Q psy4650          46 IEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQ---------  116 (381)
Q Consensus        46 ~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~---------  116 (381)
                      +.++++|+.||+|++||+..  ..++.++++|.+.|.+++|+  +.  +|++|+.|+.+++|++..+....         
T Consensus        25 ~~~l~sgs~Dg~i~vWd~~~--~~~~~~l~~H~~~V~~v~~~--~~--~l~s~s~D~~i~~~~~~~~~~~~~~~~~~~~~   98 (293)
T d1p22a2          25 DQKIVSGLRDNTIKIWDKNT--LECKRILTGHTGSVLCLQYD--ER--VIITGSSDSTVRVWDVNTGEMLNTLIHHCEAV   98 (293)
T ss_dssp             SSEEEEEESSSCEEEEESSS--CCEEEEECCCSSCEEEEECC--SS--EEEEEETTSCEEEEESSSCCEEEEECCCCSCE
T ss_pred             CCEEEEEeCCCeEEEEECCC--CcEEEEEecCCCCEeeeecc--cc--eeeccccccccccccccccccccccccccccc
Confidence            56899999999999999974  56778999999999999884  34  89999999999999987642211         


Q ss_pred             ----------------------------------EeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEec
Q psy4650         117 ----------------------------------TLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTY  162 (381)
Q Consensus       117 ----------------------------------~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~  162 (381)
                                                        .+..|...+.++.+.  ...+++++.|+.+++||..+++.+..+.+
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~s~d~~i~~~d~~~~~~~~~~~~  176 (293)
T d1p22a2          99 LHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWNTSTCEFVRTLNG  176 (293)
T ss_dssp             EEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred             ccccccccceeecccccceeEeeccccccccccccccccccccccceec--ccccccccCCCceeeecCCCCcEEEEEcc
Confidence                                              123455555555554  45678888999999999999999999999


Q ss_pred             CCcceEEEEEcCCCCEEEEEeCCCeEEEEec
Q psy4650         163 GLERVWTISSLKGSNNVAIGYDEGSVLLKVG  193 (381)
Q Consensus       163 ~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~~  193 (381)
                      +...+..+.++  +..+++++.||.+++|+.
T Consensus       177 ~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~  205 (293)
T d1p22a2         177 HKRGIACLQYR--DRLVVSGSSDNTIRLWDI  205 (293)
T ss_dssp             CSSCEEEEEEE--TTEEEEEETTSCEEEEET
T ss_pred             cccccccccCC--CCeEEEecCCCEEEEEec
Confidence            99999999886  458999999999999873

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.79  E-value=3.9e-18  Score=146.84  Aligned_cols=145  Identities=12%  Similarity=0.129  Sum_probs=116.8

Q ss_pred             CCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEE-EeccCC
Q psy4650          44 DMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQ-TLEGHG  122 (381)
Q Consensus        44 ~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~-~~~~~~  122 (381)
                      ++..+++++..++.+++|+.... .........|.+.+.+++|+|++.  +|++|+.||.|++||+.++.... .+.+|.
T Consensus       129 ~~~~~~v~~~~~~~v~~~~~~~~-~~~~~~~~~~~~~v~~~~~s~~~~--~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~  205 (287)
T d1pgua2         129 SQNYVAVGLEEGNTIQVFKLSDL-EVSFDLKTPLRAKPSYISISPSET--YIAAGDVMGKILLYDLQSREVKTSRWAFRT  205 (287)
T ss_dssp             CSSEEEEEETTTSCEEEEETTEE-EEEEECSSCCSSCEEEEEECTTSS--EEEEEETTSCEEEEETTTTEEEECCSCCCS
T ss_pred             cCcceeeeccccceeeeeecccc-ceeeeeeeccCCceeEEEeccCcc--ccccccccccccceeecccccccccccccc
Confidence            33445555555668999998642 222223345788999999999887  89999999999999999987654 467899


Q ss_pred             CCEEEEEEecCC----------CEEEEEeCCCCEEEEeCCC-CeeeEEEecCCcceEEEEEcCCCCEEEEEeCCCeEEEE
Q psy4650         123 QNISAVCFHPEL----------PIVITGSEDGSVRVWHSGT-HRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLK  191 (381)
Q Consensus       123 ~~v~~~~~~p~~----------~~l~s~~~d~~i~vwd~~~-~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~  191 (381)
                      ++|.+++|+|.+          .++++|+.|++|++||+.. +..+..+.+|...|++++|+|++ .+++++.||.+++|
T Consensus       206 ~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~-~l~s~g~D~~v~iW  284 (287)
T d1pgua2         206 SKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TLVSSGADACIKRW  284 (287)
T ss_dssp             SCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETT-EEEEEETTSCEEEE
T ss_pred             cccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCC-EEEEEECCCeEEEE
Confidence            999999998754          5899999999999999976 55667777899999999999986 58889999999995


Q ss_pred             e
Q psy4650         192 V  192 (381)
Q Consensus       192 ~  192 (381)
                      .
T Consensus       285 ~  285 (287)
T d1pgua2         285 N  285 (287)
T ss_dssp             E
T ss_pred             E
Confidence            3

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.79  E-value=3.1e-18  Score=148.31  Aligned_cols=150  Identities=15%  Similarity=0.195  Sum_probs=117.8

Q ss_pred             eeeecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEE--
Q psy4650          38 DITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCV--  115 (381)
Q Consensus        38 ~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~--  115 (381)
                      .+...++ +.++++++.||.+++||+...... .....+|...|.+++|+|++.  ++++++.|+.|++||+.++...  
T Consensus       141 ~~~~s~~-~~~l~~g~~dg~i~~~d~~~~~~~-~~~~~~~~~~i~~~~~~~~~~--~l~~~~~d~~i~~~~~~~~~~~~~  216 (299)
T d1nr0a2         141 CVALSND-KQFVAVGGQDSKVHVYKLSGASVS-EVKTIVHPAEITSVAFSNNGA--FLVATDQSRKVIPYSVANNFELAH  216 (299)
T ss_dssp             EEEECTT-SCEEEEEETTSEEEEEEEETTEEE-EEEEEECSSCEEEEEECTTSS--EEEEEETTSCEEEEEGGGTTEESC
T ss_pred             ccccccc-cccccccccccccccccccccccc-ccccccccccccccccccccc--cccccccccccccccccccccccc
Confidence            4445554 568999999999999998643222 223457899999999999776  8999999999999999877544  


Q ss_pred             -EEeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEE--ecC-CcceEEEEEcCCCCEEEEEeCCCeEEEE
Q psy4650         116 -QTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISL--TYG-LERVWTISSLKGSNNVAIGYDEGSVLLK  191 (381)
Q Consensus       116 -~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~--~~~-~~~v~~v~~~~~~~~l~~~~~dg~v~i~  191 (381)
                       ..+.+|..+|.+++|+|++.++++|+.|+.|++||+.++......  ..+ ...+.++.| +++.+|++|+.||.|++|
T Consensus       217 ~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~s~D~~i~iW  295 (299)
T d1nr0a2         217 TNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIW-LNETTIVSAGQDSNIKFW  295 (299)
T ss_dssp             CCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEE-EETTEEEEEETTSCEEEE
T ss_pred             cccccccccccccccccccccceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEEEE-CCCCEEEEEeCCCEEEEE
Confidence             345679999999999999999999999999999999876543332  233 345666654 567899999999999994


Q ss_pred             e
Q psy4650         192 V  192 (381)
Q Consensus       192 ~  192 (381)
                      +
T Consensus       296 d  296 (299)
T d1nr0a2         296 N  296 (299)
T ss_dssp             E
T ss_pred             e
Confidence            3

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.78  E-value=2e-18  Score=151.04  Aligned_cols=198  Identities=12%  Similarity=0.017  Sum_probs=136.7

Q ss_pred             hcceeeeecCCCceEEEEEecCCeEEEecCCCccc-eeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCC
Q psy4650          34 ETKVDITTNKDMIEYKISYQESSRVKAFNPIQVAT-LILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNK  112 (381)
Q Consensus        34 ~~~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~-~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~  112 (381)
                      ....++.+.|+ +.+|++|+.||+|++||+..... ..+....+|.++|.+++|+|++. .+|++|+.|++|++|+...+
T Consensus        12 d~I~~l~fsp~-~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~-~~l~sg~~d~~v~~w~~~~~   89 (342)
T d1yfqa_          12 DYISDIKIIPS-KSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTD-LQIYVGTVQGEILKVDLIGS   89 (342)
T ss_dssp             SCEEEEEEEGG-GTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSS-EEEEEEETTSCEEEECSSSS
T ss_pred             CCEEEEEEeCC-CCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCC-CEEEEcccccceeeeecccc
Confidence            34567788876 56999999999999999854322 23344457999999999999765 37999999999999999765


Q ss_pred             eEEEEeccCCCC-------------------------------------------------EEEEEEecCCCEEEEEeCC
Q psy4650         113 TCVQTLEGHGQN-------------------------------------------------ISAVCFHPELPIVITGSED  143 (381)
Q Consensus       113 ~~~~~~~~~~~~-------------------------------------------------v~~~~~~p~~~~l~s~~~d  143 (381)
                      ........+...                                                 .....+.+.+..+++++.|
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  169 (342)
T d1yfqa_          90 PSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNN  169 (342)
T ss_dssp             SSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEEEEST
T ss_pred             cccccccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccCCceeeecCC
Confidence            433322211110                                                 0122445666677888888


Q ss_pred             CCEEEEeCCCCeeeEE-----------------------------------E--------------------------ec
Q psy4650         144 GSVRVWHSGTHRLEIS-----------------------------------L--------------------------TY  162 (381)
Q Consensus       144 ~~i~vwd~~~~~~~~~-----------------------------------~--------------------------~~  162 (381)
                      +.+++||+..+.....                                   .                          ..
T Consensus       170 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (342)
T d1yfqa_         170 SQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTN  249 (342)
T ss_dssp             TEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCS
T ss_pred             CcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeeeeeccCCCc
Confidence            8888888754321100                                   0                          01


Q ss_pred             CCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCceEEEecCCCEEEEEecCceeecccccCCccccccCCceEEeeehH
Q psy4650         163 GLERVWTISSLKGSNNVAIGYDEGSVLLKVGREEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSVH  242 (381)
Q Consensus       163 ~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~  242 (381)
                      |...+.+++|+|++.+|++|+.||.|++          ||..+++.+.........       ...+++|+|..+++++.
T Consensus       250 ~~~~v~~l~~sp~~~~lasg~~Dg~v~v----------WD~~~~~~l~~~~~~~~~-------~~~~~s~~~~~l~~a~s  312 (342)
T d1yfqa_         250 LAYPVNSIEFSPRHKFLYTAGSDGIISC----------WNLQTRKKIKNFAKFNED-------SVVKIACSDNILCLATS  312 (342)
T ss_dssp             SCCCEEEEEECTTTCCEEEEETTSCEEE----------EETTTTEEEEECCCCSSS-------EEEEEEECSSEEEEEEE
T ss_pred             ccccceeEEecCCccEEEEECCCCEEEE----------EECCCCcEEEEecCCCCC-------EEEEEEeCCCEEEEEEc
Confidence            2224678999999999999999999999          888888877655322111       11467789999998887


Q ss_pred             HHHHhccC
Q psy4650         243 VTIKYRLD  250 (381)
Q Consensus       243 d~~~~~~d  250 (381)
                      +.....|.
T Consensus       313 dd~~~~~~  320 (342)
T d1yfqa_         313 DDTFKTNA  320 (342)
T ss_dssp             CTHHHHCS
T ss_pred             CCcEEEee
Confidence            76655554

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.76  E-value=4.9e-18  Score=150.53  Aligned_cols=196  Identities=9%  Similarity=-0.044  Sum_probs=145.5

Q ss_pred             ecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCC--CeEEEEECCCCeEEEEe
Q psy4650          41 TNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADD--RLVKIWDYQNKTCVQTL  118 (381)
Q Consensus        41 ~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d--~~v~vwd~~~~~~~~~~  118 (381)
                      ++|..+.+++.++ +|.|++|+....  .. ..+ +|.+.|.+++|+|+|.  .|++++.+  ..|++||..++... .+
T Consensus        10 fSP~dG~~~a~~~-~g~v~v~d~~~~--~~-~~~-~~~~~v~~~~~spDg~--~l~~~~~~~g~~v~v~d~~~~~~~-~~   81 (360)
T d1k32a3          10 FSPLDGDLIAFVS-RGQAFIQDVSGT--YV-LKV-PEPLRIRYVRRGGDTK--VAFIHGTREGDFLGIYDYRTGKAE-KF   81 (360)
T ss_dssp             EEECGGGCEEEEE-TTEEEEECTTSS--BE-EEC-SCCSCEEEEEECSSSE--EEEEEEETTEEEEEEEETTTCCEE-EC
T ss_pred             ccCCCCCEEEEEE-CCeEEEEECCCC--cE-EEc-cCCCCEEEEEECCCCC--EEEEEEcCCCCEEEEEECCCCcEE-Ee
Confidence            4552245666655 579999998642  22 333 7999999999999887  56655544  37999999988754 56


Q ss_pred             ccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCce
Q psy4650         119 EGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKVGREEPA  198 (381)
Q Consensus       119 ~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~~~~~~~  198 (381)
                      ..|...|.+++|+|+++++++++.++.+++|++.+++....+..+...+.+++|+|+|++++.++.++....+...+..+
T Consensus        82 ~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~  161 (360)
T d1k32a3          82 EENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAI  161 (360)
T ss_dssp             CCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEE
T ss_pred             eCCCceEEeeeecccccccceeccccccccccccccceeeeeecccccccchhhccceeeeeeeccccccceeeccccce
Confidence            67999999999999999999999999999999999999999988999999999999999998776544433333333344


Q ss_pred             EEEecCCCEEEEEecCceeecccccCCccccccCCceEEeeehHHHHHhccCC
Q psy4650         199 VSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSVHVTIKYRLDI  251 (381)
Q Consensus       199 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~d~~~~~~d~  251 (381)
                      ..||..++.........       .......++|||+.|++++.+.....|+.
T Consensus       162 ~v~d~~~~~~~~~~~~~-------~~~~~~~~spdg~~l~~~s~~~~~~~~d~  207 (360)
T d1k32a3         162 HVYDMEGRKIFAATTEN-------SHDYAPAFDADSKNLYYLSYRSLDPSPDR  207 (360)
T ss_dssp             EEEETTTTEEEECSCSS-------SBEEEEEECTTSCEEEEEESCCCCCEECS
T ss_pred             eeeccccCceeeecccc-------cccccccccCCCCEEEEEeCCCceEcccc
Confidence            45888777654432221       11112467899999999887776666664

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=2.1e-17  Score=144.71  Aligned_cols=138  Identities=28%  Similarity=0.450  Sum_probs=117.2

Q ss_pred             ceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEEEecc---CC
Q psy4650          46 IEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEG---HG  122 (381)
Q Consensus        46 ~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~---~~  122 (381)
                      +.++++++.||+|++|++..  ...+..+.+|...+.++.+++  +  +|++|+.|+.|++||....+....+.+   |.
T Consensus       187 ~~~l~s~~~dg~i~~~d~~~--~~~~~~~~~~~~~v~~~~~~~--~--~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~  260 (342)
T d2ovrb2         187 GIHVVSGSLDTSIRVWDVET--GNCIHTLTGHQSLTSGMELKD--N--ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQ  260 (342)
T ss_dssp             SSEEEEEETTSCEEEEETTT--CCEEEEECCCCSCEEEEEEET--T--EEEEEETTSCEEEEETTTCCEEEEECSTTSCS
T ss_pred             CCEEEEEeCCCeEEEeeccc--ceeeeEecccccceeEEecCC--C--EEEEEcCCCEEEEEecccccccccccccceee
Confidence            55899999999999999874  456788899999999988864  4  899999999999999999887777765   45


Q ss_pred             CCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEe-----cCCcceEEEEEcCCCCEEEEEeCCCe----EEEE
Q psy4650         123 QNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLT-----YGLERVWTISSLKGSNNVAIGYDEGS----VLLK  191 (381)
Q Consensus       123 ~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~-----~~~~~v~~v~~~~~~~~l~~~~~dg~----v~i~  191 (381)
                      ..+.++.++  +.++++|+.||.|++||+.+++.+..+.     +|...|++++|+|++.++++|+.||+    +++|
T Consensus       261 ~~~~~~~~~--~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~  336 (342)
T d2ovrb2         261 SAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVL  336 (342)
T ss_dssp             SCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEE
T ss_pred             eceeecccC--CCeeEEEcCCCEEEEEECCCCCEEEEEecccCCCCCCCEEEEEECCCCCEEEEEeCCCCCeeEEEEE
Confidence            566666664  5689999999999999999999988874     46678999999999999999999985    6663

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.76  E-value=5.2e-17  Score=142.90  Aligned_cols=118  Identities=26%  Similarity=0.450  Sum_probs=100.7

Q ss_pred             eEeeccccccE-EEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEEEeccCCCCEEEEEEecCCCEEEEEeCCCCEEEE
Q psy4650          71 LKTLYGHEKGV-NCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVW  149 (381)
Q Consensus        71 ~~~l~~h~~~v-~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vw  149 (381)
                      ..+|+||.+.| +|+.+  +++  +|++|+.||+|++||+.+++++..+.+|.++|.+++|+|+ ..+++|+.|++|++|
T Consensus         5 ~~tL~GH~~~vitc~~~--~~~--~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw   79 (355)
T d1nexb2           5 RTTLRGHMTSVITCLQF--EDN--YVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVW   79 (355)
T ss_dssp             EEEEECCSSSCEEEEEE--ETT--EEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETT-TEEEEEETTCCEEEE
T ss_pred             cEEECCcCCCcEEEEEE--CCC--EEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCC-CEEEEEecccccccc
Confidence            46799999876 56555  455  8999999999999999999999999999999999999985 589999999999999


Q ss_pred             eCCCCeeeEEEecCC--cceEEEEEcCCCCEEEEEeCCCeEEEEec
Q psy4650         150 HSGTHRLEISLTYGL--ERVWTISSLKGSNNVAIGYDEGSVLLKVG  193 (381)
Q Consensus       150 d~~~~~~~~~~~~~~--~~v~~v~~~~~~~~l~~~~~dg~v~i~~~  193 (381)
                      +..............  .......+.+++..+++++.|+.+++|+.
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~  125 (355)
T d1nexb2          80 DIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKL  125 (355)
T ss_dssp             ETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEEC
T ss_pred             cccccccccccccccccccccccccccccceeeeecCCCcEEEEEc
Confidence            999988777665433  34556677889999999999999999863

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.75  E-value=6e-18  Score=145.66  Aligned_cols=176  Identities=16%  Similarity=0.127  Sum_probs=124.0

Q ss_pred             EEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCC-----------------
Q psy4650          49 KISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQN-----------------  111 (381)
Q Consensus        49 ~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~-----------------  111 (381)
                      |++|+.||+|++|++..       ...+|...|.++.+++++   .+++++.|+++++|+...                 
T Consensus        24 l~sgs~Dg~v~~Wd~~~-------~~~~h~~~V~~~~~~~~~---~~~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~~~~   93 (287)
T d1pgua2          24 LISGSYDGRIMEWSSSS-------MHQDHSNLIVSLDNSKAQ---EYSSISWDDTLKVNGITKHEFGSQPKVASANNDGF   93 (287)
T ss_dssp             TEEEETTSCEEETTTTE-------EECCCCSCEEEEECCSTT---CCEEEETTTEEEETTEEEEECSSCEEEEEECSSSE
T ss_pred             EEEEeCCCeEEEEECCC-------CCCCCCCCEEEEEecCCC---eEEEEeeccccccccccccccccceeeeeeccCCc
Confidence            88999999999999753       235788888888887643   367778888888776431                 


Q ss_pred             ---------------------------------------------------------CeEEEEe-ccCCCCEEEEEEecC
Q psy4650         112 ---------------------------------------------------------KTCVQTL-EGHGQNISAVCFHPE  133 (381)
Q Consensus       112 ---------------------------------------------------------~~~~~~~-~~~~~~v~~~~~~p~  133 (381)
                                                                               ......+ ..|...+.+++|+|+
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  173 (287)
T d1pgua2          94 TAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPS  173 (287)
T ss_dssp             EEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTT
T ss_pred             eEEEeecccceeeeccceeeeeeccccceeeeeeccCcceeeeccccceeeeeeccccceeeeeeeccCCceeEEEeccC
Confidence                                                                     1111111 236678999999999


Q ss_pred             CCEEEEEeCCCCEEEEeCCCCeeeEE-EecCCcceEEEEEcCCC----------CEEEEEeCCCeEEEEecCCCceEEEe
Q psy4650         134 LPIVITGSEDGSVRVWHSGTHRLEIS-LTYGLERVWTISSLKGS----------NNVAIGYDEGSVLLKVGREEPAVSMD  202 (381)
Q Consensus       134 ~~~l~s~~~d~~i~vwd~~~~~~~~~-~~~~~~~v~~v~~~~~~----------~~l~~~~~dg~v~i~~~~~~~~~~~d  202 (381)
                      +.+|++|+.||.|++||+.++..... +.+|...|.+++|+|.+          .++++|+.|+.+++          ||
T Consensus       174 ~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~i----------w~  243 (287)
T d1pgua2         174 ETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFI----------YS  243 (287)
T ss_dssp             SSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEE----------EE
T ss_pred             ccccccccccccccceeecccccccccccccccccceeeecccccccccccCCCCeeEeecCCCeEEE----------EE
Confidence            99999999999999999999887654 56788999999998754          57888888888888          55


Q ss_pred             cCC-CEEEEEecCceeecccccCCccccccCCceEEeeehHHHHHhccCC
Q psy4650         203 VNG-CKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSVHVTIKYRLDI  251 (381)
Q Consensus       203 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~d~~~~~~d~  251 (381)
                      ... +..+.....+  ...+.    .+.|+|++. +++++.|+..+.|++
T Consensus       244 ~~~~~~~~~~~~~h--~~~V~----~v~~~~~~~-l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         244 VKRPMKIIKALNAH--KDGVN----NLLWETPST-LVSSGADACIKRWNV  286 (287)
T ss_dssp             SSCTTCCEEETTSS--TTCEE----EEEEEETTE-EEEEETTSCEEEEEE
T ss_pred             CCCCCeEEEEeCCC--CCCeE----EEEECCCCE-EEEEECCCeEEEEEE
Confidence            533 2222211111  11111    145678875 667777888888874

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.73  E-value=5.6e-17  Score=143.59  Aligned_cols=152  Identities=7%  Similarity=-0.063  Sum_probs=124.7

Q ss_pred             cceeeeecCCCceEEEEEecCC-eEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCe
Q psy4650          35 TKVDITTNKDMIEYKISYQESS-RVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKT  113 (381)
Q Consensus        35 ~~~~i~~~~~~~~~~~s~~~d~-~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~  113 (381)
                      ....+.+.+++..+++++..++ .+++|+...   ..+..+.+|.+.|.+++|+|++.  +|++++.++.+++|+..++.
T Consensus        44 ~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~---~~~~~~~~~~~~v~~~~~spdg~--~l~~~~~~~~~~~~~~~~~~  118 (360)
T d1k32a3          44 RIRYVRRGGDTKVAFIHGTREGDFLGIYDYRT---GKAEKFEENLGNVFAMGVDRNGK--FAVVANDRFEIMTVDLETGK  118 (360)
T ss_dssp             CEEEEEECSSSEEEEEEEETTEEEEEEEETTT---CCEEECCCCCCSEEEEEECTTSS--EEEEEETTSEEEEEETTTCC
T ss_pred             CEEEEEECCCCCEEEEEEcCCCCEEEEEECCC---CcEEEeeCCCceEEeeeeccccc--ccceeccccccccccccccc
Confidence            3467888888654444555543 789999864   34567789999999999999887  89999999999999999999


Q ss_pred             EEEEeccCCCCEEEEEEecCCCEEEEEe----------CCCCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEe
Q psy4650         114 CVQTLEGHGQNISAVCFHPELPIVITGS----------EDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGY  183 (381)
Q Consensus       114 ~~~~~~~~~~~v~~~~~~p~~~~l~s~~----------~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~  183 (381)
                      ....+..|...+.+++|+|+|++++.++          .++.+++||..+++..... .+...+..+.|+|+|+.|++++
T Consensus       119 ~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~-~~~~~~~~~~~spdg~~l~~~s  197 (360)
T d1k32a3         119 PTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAAT-TENSHDYAPAFDADSKNLYYLS  197 (360)
T ss_dssp             EEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECS-CSSSBEEEEEECTTSCEEEEEE
T ss_pred             eeeeeecccccccchhhccceeeeeeeccccccceeeccccceeeeccccCceeeec-ccccccccccccCCCCEEEEEe
Confidence            9899999999999999999999988653          3456999999988765443 4667788999999999999999


Q ss_pred             CCCeEEEEe
Q psy4650         184 DEGSVLLKV  192 (381)
Q Consensus       184 ~dg~v~i~~  192 (381)
                      .++.+.+|.
T Consensus       198 ~~~~~~~~d  206 (360)
T d1k32a3         198 YRSLDPSPD  206 (360)
T ss_dssp             SCCCCCEEC
T ss_pred             CCCceEccc
Confidence            998887764

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.69  E-value=4.2e-17  Score=142.45  Aligned_cols=172  Identities=9%  Similarity=0.007  Sum_probs=119.1

Q ss_pred             eeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeE---EEEeccCCCCEEEEEEecCCC-EEEEEeCCCC
Q psy4650          70 ILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTC---VQTLEGHGQNISAVCFHPELP-IVITGSEDGS  145 (381)
Q Consensus        70 ~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~---~~~~~~~~~~v~~~~~~p~~~-~l~s~~~d~~  145 (381)
                      .++.+++|.+.|++++|+|++.  +|++|+.||+|++||+.++..   .....+|.++|.+++|+|++. .+++|+.|+.
T Consensus         3 ~v~~~~~h~d~I~~l~fsp~~~--~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~   80 (342)
T d1yfqa_           3 IVQIEQAPKDYISDIKIIPSKS--LLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGE   80 (342)
T ss_dssp             EEECSSCCSSCEEEEEEEGGGT--EEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSC
T ss_pred             eEEcCCCCCCCEEEEEEeCCCC--EEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccc
Confidence            4566789999999999999876  899999999999999876532   233346999999999999755 8999999999


Q ss_pred             EEEEeCCCCeeeEEEecCCc-ceEEEEEcCCCCEEEEEeCCCeEEEEecCCCceEEEecCCCEEEEEecCceeecccccC
Q psy4650         146 VRVWHSGTHRLEISLTYGLE-RVWTISSLKGSNNVAIGYDEGSVLLKVGREEPAVSMDVNGCKIIWARHSEVQQANLKTM  224 (381)
Q Consensus       146 i~vwd~~~~~~~~~~~~~~~-~v~~v~~~~~~~~l~~~~~dg~v~i~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~  224 (381)
                      |++|+...+........+.. ......+.+++..+++++.++.+++|          |.+.+..................
T Consensus        81 v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w----------d~~~~~~~~~~~~~~~~~~~~~~  150 (342)
T d1yfqa_          81 ILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVI----------DPRNYGDGVIAVKNLNSNNTKVK  150 (342)
T ss_dssp             EEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEE----------CHHHHTTBCEEEEESCSSSSSSC
T ss_pred             eeeeeccccccccccccccccccccccccccccccccccccccccee----------eccccccceeeecccccccccce
Confidence            99999998877666654433 34556667788899999999999995          43211100000000000000111


Q ss_pred             CccccccCCceEEeeehHHHHHhccCCCc
Q psy4650         225 PEVFENITAGVVLTLSVHVTIKYRLDISD  253 (381)
Q Consensus       225 ~~~~~~~~dg~~l~~~~~d~~~~~~d~~~  253 (381)
                      ...+.+.+++..++.+..++....|++..
T Consensus       151 ~~~~~~~~~~~~~~~~~~d~~i~~~~~~~  179 (342)
T d1yfqa_         151 NKIFTMDTNSSRLIVGMNNSQVQWFRLPL  179 (342)
T ss_dssp             CCEEEEEECSSEEEEEESTTEEEEEESSC
T ss_pred             eeeeeeeccCCceeeecCCCcEEEEeccc
Confidence            11123445667777777777777777654

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=2.4e-15  Score=128.33  Aligned_cols=136  Identities=22%  Similarity=0.482  Sum_probs=116.4

Q ss_pred             ceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEEEeccCCCCE
Q psy4650          46 IEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNI  125 (381)
Q Consensus        46 ~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v  125 (381)
                      ..++++++.|+.+++|++..  ...+..+.+|...+..+.+++  .  .+++++.|++|++||+.+...+..+.+|...+
T Consensus       148 ~~~~~~~s~d~~i~~~d~~~--~~~~~~~~~~~~~v~~~~~~~--~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v  221 (293)
T d1p22a2         148 DKYIVSASGDRTIKVWNTST--CEFVRTLNGHKRGIACLQYRD--R--LVVSGSSDNTIRLWDIECGACLRVLEGHEELV  221 (293)
T ss_dssp             TTEEEEEETTSEEEEEETTT--CCEEEEEECCSSCEEEEEEET--T--EEEEEETTSCEEEEETTTCCEEEEECCCSSCE
T ss_pred             ccccccccCCCceeeecCCC--CcEEEEEcccccccccccCCC--C--eEEEecCCCEEEEEecccceeeeeecccceee
Confidence            44678899999999999974  456778899999999888753  4  79999999999999999999999999998887


Q ss_pred             EEEEEecCCCEEEEEeCCCCEEEEeCCC---------CeeeEEEecCCcceEEEEEcCCCCEEEEEeCCCeEEEE
Q psy4650         126 SAVCFHPELPIVITGSEDGSVRVWHSGT---------HRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLK  191 (381)
Q Consensus       126 ~~~~~~p~~~~l~s~~~d~~i~vwd~~~---------~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~  191 (381)
                      .+  +.+++..+++|+.||.|++||+.+         ...+..+.+|.+.|++++|+  +.+|++|+.||.+++|
T Consensus       222 ~~--~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d--~~~l~s~s~Dg~i~iW  292 (293)
T d1p22a2         222 RC--IRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD--EFQIVSSSHDDTILIW  292 (293)
T ss_dssp             EE--EECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEEC--SSCEEECCSSSEEEEE
T ss_pred             ee--ccccceEEEEEcCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEEc--CCEEEEEecCCEEEEe
Confidence            75  456788999999999999999753         34577888999999999995  5689999999999995

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.62  E-value=3e-15  Score=136.44  Aligned_cols=177  Identities=12%  Similarity=-0.021  Sum_probs=126.7

Q ss_pred             eEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeE--EEEe---ccC
Q psy4650          47 EYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTC--VQTL---EGH  121 (381)
Q Consensus        47 ~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~--~~~~---~~~  121 (381)
                      .++++.+.+|+|.+||+.  ...++..+..| ..+..++|+|||.  ++++++.|+++++||+.+++.  ...+   .+|
T Consensus        33 ~~~v~~~d~g~v~v~D~~--t~~v~~~~~~g-~~~~~v~fSpDG~--~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~  107 (432)
T d1qksa2          33 LFSVTLRDAGQIALIDGS--TYEIKTVLDTG-YAVHISRLSASGR--YLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEA  107 (432)
T ss_dssp             EEEEEETTTTEEEEEETT--TCCEEEEEECS-SCEEEEEECTTSC--EEEEEETTSEEEEEETTSSSCCEEEEEECCSEE
T ss_pred             EEEEEEcCCCEEEEEECC--CCcEEEEEeCC-CCeeEEEECCCCC--EEEEEcCCCCEEEEEeeCCCceEEEEEecCCCC
Confidence            456999999999999987  45677888777 4699999999987  899999999999999988753  2333   356


Q ss_pred             CCCEEEEEEecCCCEE-EEEeCCCCEEEEeCCCCeeeEEEecCCc-----------ceEEEEEcCCCCEE-EEEeCCCeE
Q psy4650         122 GQNISAVCFHPELPIV-ITGSEDGSVRVWHSGTHRLEISLTYGLE-----------RVWTISSLKGSNNV-AIGYDEGSV  188 (381)
Q Consensus       122 ~~~v~~~~~~p~~~~l-~s~~~d~~i~vwd~~~~~~~~~~~~~~~-----------~v~~v~~~~~~~~l-~~~~~dg~v  188 (381)
                      .+.+.+..|+|||+++ ++++.++++++||..+++.+..+..+..           ....+.++|+|..+ ++...++.+
T Consensus       108 ~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i  187 (432)
T d1qksa2         108 RSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKI  187 (432)
T ss_dssp             EEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEE
T ss_pred             CCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeE
Confidence            6667777888999975 6788899999999999999888765433           34556667766654 334455666


Q ss_pred             EEEecCCCceEEEecCCCE--EEEEecCceeecccccCCccccccCCceEEeeehHHHH
Q psy4650         189 LLKVGREEPAVSMDVNGCK--IIWARHSEVQQANLKTMPEVFENITAGVVLTLSVHVTI  245 (381)
Q Consensus       189 ~i~~~~~~~~~~~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~d~~  245 (381)
                      .+          ||..++.  .++.+...       .....+.++|||++++.+..+..
T Consensus       188 ~~----------~d~~~~~~~~~~~i~~g-------~~~~~~~~spdg~~~~va~~~~~  229 (432)
T d1qksa2         188 LL----------VDYTDLNNLKTTEISAE-------RFLHDGGLDGSHRYFITAANARN  229 (432)
T ss_dssp             EE----------EETTCSSEEEEEEEECC-------SSEEEEEECTTSCEEEEEEGGGT
T ss_pred             EE----------EEccCCCcceEEEEccc-------CccccceECCCCCEEEEeccccc
Confidence            66          6554432  23333221       11222578899998887766543

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.59  E-value=4.9e-14  Score=122.95  Aligned_cols=136  Identities=6%  Similarity=-0.000  Sum_probs=109.2

Q ss_pred             eEEEEEecCCeEEEecCCCccceeeEeecc--ccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEEEeccCCC-
Q psy4650          47 EYKISYQESSRVKAFNPIQVATLILKTLYG--HEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQ-  123 (381)
Q Consensus        47 ~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~--h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~-  123 (381)
                      +|+++++.|++|++||+..  ..++..+..  +...+.+++|+|+|.. ++++++.++.|.+||+.+++.+..+..+.. 
T Consensus         2 ~~~vt~~~d~~v~v~D~~s--~~~~~~i~~~~~~~~~~~i~~spDg~~-l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~   78 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEK--MAVDKVITIADAGPTPMVPMVAPGGRI-AYATVNKSESLVKIDLVTGETLGRIDLSTPE   78 (337)
T ss_dssp             EEEEEEETTTEEEEEETTT--TEEEEEEECTTCTTCCCCEEECTTSSE-EEEEETTTTEEEEEETTTCCEEEEEECCBTT
T ss_pred             eEEEEEcCCCEEEEEECCC--CeEEEEEECCCCCCCccEEEECCCCCE-EEEEECCCCeEEEEECCCCcEEEEEecCCCc
Confidence            5899999999999999974  455666654  4456889999998872 346788999999999999998888776543 


Q ss_pred             ----CEEEEEEecCCCEEEEEe------------CCCCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCCC
Q psy4650         124 ----NISAVCFHPELPIVITGS------------EDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEG  186 (381)
Q Consensus       124 ----~v~~~~~~p~~~~l~s~~------------~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg  186 (381)
                          .+..++|+|++..++.++            .+..+.+||..++.....+..+ ..+..++|+|+|+++++++.+.
T Consensus        79 ~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~  156 (337)
T d1pbyb_          79 ERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAP-RQITMLAWARDGSKLYGLGRDL  156 (337)
T ss_dssp             EEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECC-SSCCCEEECTTSSCEEEESSSE
T ss_pred             ccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEecccc-CCceEEEEcCCCCEEEEEcCCc
Confidence                345789999999887665            4678999999999988888744 5677899999999998886553

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.56  E-value=2.3e-14  Score=130.38  Aligned_cols=141  Identities=12%  Similarity=0.019  Sum_probs=109.6

Q ss_pred             ceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEE--Ee---cc
Q psy4650          46 IEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQ--TL---EG  120 (381)
Q Consensus        46 ~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~--~~---~~  120 (381)
                      ..++++++.||+|++||+..  ..++.++..|. .+.+++|+|||.  ++++++.|+++++||+.+++...  .+   .+
T Consensus        32 ~~~~V~~~~dg~v~vwD~~t--~~~~~~l~~g~-~~~~vafSPDGk--~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~  106 (426)
T d1hzua2          32 NLFSVTLRDAGQIALVDGDS--KKIVKVIDTGY-AVHISRMSASGR--YLLVIGRDARIDMIDLWAKEPTKVAEIKIGIE  106 (426)
T ss_dssp             GEEEEEETTTTEEEEEETTT--CSEEEEEECCS-SEEEEEECTTSC--EEEEEETTSEEEEEETTSSSCEEEEEEECCSE
T ss_pred             eEEEEEEcCCCEEEEEECCC--CcEEEEEeCCC-CeeEEEECCCCC--EEEEEeCCCCEEEEEccCCceeEEEEEeCCCC
Confidence            44678899999999999974  56778888774 589999999987  78999999999999999886433  22   35


Q ss_pred             CCCCEEEEEEecCCCEEE-EEeCCCCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCE-EEEEeCCCeEEEE
Q psy4650         121 HGQNISAVCFHPELPIVI-TGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNN-VAIGYDEGSVLLK  191 (381)
Q Consensus       121 ~~~~v~~~~~~p~~~~l~-s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~-l~~~~~dg~v~i~  191 (381)
                      |.+.+.+++|+|+|++++ ++..++.+++||..++.....+..+...+..+.+.+++.. .+..+.|+...++
T Consensus       107 ~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~  179 (426)
T d1hzua2         107 ARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIV  179 (426)
T ss_dssp             EEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEE
T ss_pred             CcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEE
Confidence            666777888899999765 4557999999999999998888877666666666666653 3455556655554

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.55  E-value=1.5e-12  Score=111.47  Aligned_cols=208  Identities=12%  Similarity=0.085  Sum_probs=150.2

Q ss_pred             hcceeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCe
Q psy4650          34 ETKVDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKT  113 (381)
Q Consensus        34 ~~~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~  113 (381)
                      ..|..+...+++..++++++.++.|++||+..  ...+..+..|. .+.++.|++++.. .++++..++.+.+|+..+++
T Consensus        32 ~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t--~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  107 (301)
T d1l0qa2          32 SNPMGAVISPDGTKVYVANAHSNDVSIIDTAT--NNVIATVPAGS-SPQGVAVSPDGKQ-VYVTNMASSTLSVIDTTSNT  107 (301)
T ss_dssp             SSEEEEEECTTSSEEEEEEGGGTEEEEEETTT--TEEEEEEECSS-SEEEEEECTTSSE-EEEEETTTTEEEEEETTTTE
T ss_pred             CCceEEEEeCCCCEEEEEECCCCEEEEEECCC--Cceeeeeeccc-ccccccccccccc-ccccccccceeeecccccce
Confidence            35678888988766667888999999999974  45567777665 4688999998773 66778889999999999999


Q ss_pred             EEEEeccCCCCEEEEEEecCCCEEE-EEeCCCCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCC-CeEEEE
Q psy4650         114 CVQTLEGHGQNISAVCFHPELPIVI-TGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDE-GSVLLK  191 (381)
Q Consensus       114 ~~~~~~~~~~~v~~~~~~p~~~~l~-s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d-g~v~i~  191 (381)
                      ....+..+ ....++.|+|++..++ ++..++.+.+|+..++.....+..+ ..+..+.++|++..+++++.+ +.+.++
T Consensus       108 ~~~~~~~~-~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (301)
T d1l0qa2         108 VAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVI  185 (301)
T ss_dssp             EEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred             eeeecccc-ccceEEEeecCCCeeeeeeccccceeeeeccccceeeecccC-CCceEEEeeccccceeeecccccccccc
Confidence            88888755 4678999999999665 5556888999999999988877654 557788999998887777655 334342


Q ss_pred             ecC----------------------------------CCceEEEecCCCEEEEEecCceeecccccCCccccccCCceEE
Q psy4650         192 VGR----------------------------------EEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGVVL  237 (381)
Q Consensus       192 ~~~----------------------------------~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l  237 (381)
                      ...                                  ...+..||..+++.+..+..       ......++++|||+.+
T Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~-------~~~~~~va~spdg~~l  258 (301)
T d1l0qa2         186 DTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPV-------GPDPAGIAVTPDGKKV  258 (301)
T ss_dssp             ETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEEC-------CSSEEEEEECTTSSEE
T ss_pred             cccceeeeecccccCCcceeeccccccccccccccceeeeeeeeecCCCeEEEEEcC-------CCCEEEEEEeCCCCEE
Confidence            211                                  12344455555544433221       1222236889999877


Q ss_pred             e-eehHHHHHhccCCCcC
Q psy4650         238 T-LSVHVTIKYRLDISDS  254 (381)
Q Consensus       238 ~-~~~~d~~~~~~d~~~~  254 (381)
                      . .+..++.+..||+...
T Consensus       259 ~va~~~~~~i~v~D~~t~  276 (301)
T d1l0qa2         259 YVALSFCNTVSVIDTATN  276 (301)
T ss_dssp             EEEETTTTEEEEEETTTT
T ss_pred             EEEECCCCeEEEEECCCC
Confidence            4 6667778888998643

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.55  E-value=4e-14  Score=128.74  Aligned_cols=168  Identities=13%  Similarity=0.022  Sum_probs=123.8

Q ss_pred             hcceeeeecCCCceEEEEEecCCeEEEecCCCccceeeEe---eccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECC
Q psy4650          34 ETKVDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKT---LYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQ  110 (381)
Q Consensus        34 ~~~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~---l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~  110 (381)
                      ..++.+.++|+ +.++++++.|+++++||+..........   ..+|.+.+.++.|+|+|.. +++++..++.+++||..
T Consensus        62 ~~~~~vafSPD-Gk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~-l~v~~~~~~~v~i~d~~  139 (426)
T d1hzua2          62 YAVHISRMSAS-GRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRY-TIAGAYWPPQFAIMDGE  139 (426)
T ss_dssp             SSEEEEEECTT-SCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTE-EEEEEEESSEEEEEETT
T ss_pred             CCeeEEEECCC-CCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCE-EEEeecCCCeEEEEcCC
Confidence            35678888888 4578888999999999997544433333   3467778888889998873 44666688999999865


Q ss_pred             CC------------------------------------------------------------------------------
Q psy4650         111 NK------------------------------------------------------------------------------  112 (381)
Q Consensus       111 ~~------------------------------------------------------------------------------  112 (381)
                      ++                                                                              
T Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  219 (426)
T d1hzua2         140 TLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHR  219 (426)
T ss_dssp             TCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSC
T ss_pred             ccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEeccccceeeEEeccCCccEeeeECCCCc
Confidence            40                                                                              


Q ss_pred             --------------------------------------------------------------------------eEEEEe
Q psy4650         113 --------------------------------------------------------------------------TCVQTL  118 (381)
Q Consensus       113 --------------------------------------------------------------------------~~~~~~  118 (381)
                                                                                                +....+
T Consensus       220 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l  299 (426)
T d1hzua2         220 YFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAEL  299 (426)
T ss_dssp             EEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEE
T ss_pred             EEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeeccccccccccceEeEEE
Confidence                                                                                      122234


Q ss_pred             ccCCCCEEEEEEecCCCEEEE-------EeCCCCEEEEeCCCCeeeEEEe---------cCCcceEEEEEcCCCCEEEEE
Q psy4650         119 EGHGQNISAVCFHPELPIVIT-------GSEDGSVRVWHSGTHRLEISLT---------YGLERVWTISSLKGSNNVAIG  182 (381)
Q Consensus       119 ~~~~~~v~~~~~~p~~~~l~s-------~~~d~~i~vwd~~~~~~~~~~~---------~~~~~v~~v~~~~~~~~l~~~  182 (381)
                      .+|...+..++|+|++.+++.       ++.|++|+|||+.+++...++.         .+...|.+++|+|+|++++.+
T Consensus       300 ~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk~i~vs  379 (426)
T d1hzua2         300 QGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFS  379 (426)
T ss_dssp             ECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECSSSSEEEEE
T ss_pred             ecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEEEEECCCCCEEEEE
Confidence            567777889999999999984       4568899999999988766542         345679999999999977543


Q ss_pred             -----eCCCeEEEEecCCCceEEEecCCCEEEEEec
Q psy4650         183 -----YDEGSVLLKVGREEPAVSMDVNGCKIIWARH  213 (381)
Q Consensus       183 -----~~dg~v~i~~~~~~~~~~~d~~~~~~~~~~~  213 (381)
                           +.+|.|++          ||..+++..-.+.
T Consensus       380 ~~~~~~~~~~i~v----------~D~~T~k~~~~i~  405 (426)
T d1hzua2         380 VWNGKNDSSALVV----------VDDKTLKLKAVVK  405 (426)
T ss_dssp             ECCCTTSCCEEEE----------EETTTTEEEEEEC
T ss_pred             EecCCCCCCeEEE----------EECCCCeEEEEEC
Confidence                 24677888          9998888654443

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.47  E-value=4e-12  Score=115.42  Aligned_cols=155  Identities=5%  Similarity=-0.132  Sum_probs=117.6

Q ss_pred             hcceeeeecCCCceEEEEEecCCeEEEecCCCccceeeEe---eccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECC
Q psy4650          34 ETKVDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKT---LYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQ  110 (381)
Q Consensus        34 ~~~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~---l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~  110 (381)
                      +.++.+.+.++ +.++++++.|+++++||+..........   ..+|.+.+.+..|+|||.. ++++++.++++++||..
T Consensus        62 ~~~~~v~fSpD-G~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~-l~vs~~~~~~v~i~d~~  139 (432)
T d1qksa2          62 YAVHISRLSAS-GRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKY-AIAGAYWPPQYVIMDGE  139 (432)
T ss_dssp             SCEEEEEECTT-SCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTE-EEEEEEETTEEEEEETT
T ss_pred             CCeeEEEECCC-CCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCCCCE-EEEEcCCCCeEEEEeCc
Confidence            45788889998 5688889999999999987544433333   3467778888889999872 45889999999999999


Q ss_pred             CCeEEEEeccC-----------CCCEEEEEEecCCCEE-EEEeCCCCEEEEeCCCCeeeEEEe-cCCcceEEEEEcCCCC
Q psy4650         111 NKTCVQTLEGH-----------GQNISAVCFHPELPIV-ITGSEDGSVRVWHSGTHRLEISLT-YGLERVWTISSLKGSN  177 (381)
Q Consensus       111 ~~~~~~~~~~~-----------~~~v~~~~~~p~~~~l-~s~~~d~~i~vwd~~~~~~~~~~~-~~~~~v~~v~~~~~~~  177 (381)
                      +++++..+..|           ......+.++|++..+ ++...++.+.+||..+++...... .+...+..+.|+|+|+
T Consensus       140 t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~  219 (432)
T d1qksa2         140 TLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHR  219 (432)
T ss_dssp             TCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSC
T ss_pred             cccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcceEEEEcccCccccceECCCCC
Confidence            99988776543           3345678899999865 556678999999998876544332 2445688999999999


Q ss_pred             EEEEEeCCC-eEEE
Q psy4650         178 NVAIGYDEG-SVLL  190 (381)
Q Consensus       178 ~l~~~~~dg-~v~i  190 (381)
                      ++++++.++ .+.+
T Consensus       220 ~~~va~~~~~~v~v  233 (432)
T d1qksa2         220 YFITAANARNKLVV  233 (432)
T ss_dssp             EEEEEEGGGTEEEE
T ss_pred             EEEEeccccceEEE
Confidence            887777544 5555

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.43  E-value=2.4e-11  Score=103.87  Aligned_cols=171  Identities=12%  Similarity=0.110  Sum_probs=126.4

Q ss_pred             EEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEEEeccCCCCEEEEE
Q psy4650          50 ISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVC  129 (381)
Q Consensus        50 ~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~  129 (381)
                      ++++.+++|.+||+.+  ...++++... +....++|+|+|.. ++++++.++.|++||+.+++.+..+..+. .+..++
T Consensus         6 V~~~~~~~v~v~D~~t--~~~~~~i~~g-~~p~~va~spdG~~-l~v~~~~~~~i~v~d~~t~~~~~~~~~~~-~~~~~~   80 (301)
T d1l0qa2           6 IANSESDNISVIDVTS--NKVTATIPVG-SNPMGAVISPDGTK-VYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVA   80 (301)
T ss_dssp             EEETTTTEEEEEETTT--TEEEEEEECS-SSEEEEEECTTSSE-EEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEE
T ss_pred             EEECCCCEEEEEECCC--CeEEEEEECC-CCceEEEEeCCCCE-EEEEECCCCEEEEEECCCCceeeeeeccc-cccccc
Confidence            4677899999999974  4566666543 55789999998873 44688899999999999999999988765 468999


Q ss_pred             EecCCCEEE-EEeCCCCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEE-EeCCCeEEEEecCCCceEEEecCCCE
Q psy4650         130 FHPELPIVI-TGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAI-GYDEGSVLLKVGREEPAVSMDVNGCK  207 (381)
Q Consensus       130 ~~p~~~~l~-s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~-~~~dg~v~i~~~~~~~~~~~d~~~~~  207 (381)
                      |++++..++ ++..++.+.+|+..+++....+..+ ....++.++|++..++. +..++.+.+          |+..++.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~dg~~~~~~~~~~~~~~~----------~~~~~~~  149 (301)
T d1l0qa2          81 VSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSV----------INTVTKA  149 (301)
T ss_dssp             ECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEE----------EETTTTE
T ss_pred             cccccccccccccccceeeecccccceeeeecccc-ccceEEEeecCCCeeeeeeccccceee----------eeccccc
Confidence            999998554 5566889999999999988888754 56788999999987654 445677777          6676666


Q ss_pred             EEEEecCceeecccccCCccccccCCceEEeeehHH
Q psy4650         208 IIWARHSEVQQANLKTMPEVFENITAGVVLTLSVHV  243 (381)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~d  243 (381)
                      ...........       ..+.++|++..++++..+
T Consensus       150 ~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~  178 (301)
T d1l0qa2         150 VINTVSVGRSP-------KGIAVTPDGTKVYVANFD  178 (301)
T ss_dssp             EEEEEECCSSE-------EEEEECTTSSEEEEEETT
T ss_pred             eeeecccCCCc-------eEEEeeccccceeeeccc
Confidence            65544332111       113456777766666544

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.37  E-value=4.3e-11  Score=104.22  Aligned_cols=76  Identities=9%  Similarity=0.042  Sum_probs=58.6

Q ss_pred             EEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCceEEEecCCCE
Q psy4650         128 VCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKVGREEPAVSMDVNGCK  207 (381)
Q Consensus       128 ~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~~~~~~~~~~d~~~~~  207 (381)
                      +.++|++..++.+. ++.+.+||..+++.+..+.. ...+.+++|+|+|+++++++.||.|.+          ||..+++
T Consensus       257 ~~~~~~~~~~~~~~-~~~v~v~d~~~~~~~~~~~~-~~~~~~va~s~DG~~l~v~~~d~~v~v----------~D~~t~~  324 (346)
T d1jmxb_         257 GLRSPKDPNQIYGV-LNRLAKYDLKQRKLIKAANL-DHTYYCVAFDKKGDKLYLGGTFNDLAV----------FNPDTLE  324 (346)
T ss_dssp             EEECSSCTTEEEEE-ESEEEEEETTTTEEEEEEEC-SSCCCEEEECSSSSCEEEESBSSEEEE----------EETTTTE
T ss_pred             EEEeCCCCEEEEec-CCeEEEEECCCCcEEEEEcC-CCCEEEEEEcCCCCEEEEEeCCCcEEE----------EECccCC
Confidence            34444444444433 34689999999998887763 457889999999999999999999999          9999999


Q ss_pred             EEEEecCc
Q psy4650         208 IIWARHSE  215 (381)
Q Consensus       208 ~~~~~~~~  215 (381)
                      .+..+...
T Consensus       325 ~i~~i~~p  332 (346)
T d1jmxb_         325 KVKNIKLP  332 (346)
T ss_dssp             EEEEEECS
T ss_pred             EEEEEECC
Confidence            88776543

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.36  E-value=1.3e-11  Score=107.33  Aligned_cols=143  Identities=14%  Similarity=0.083  Sum_probs=104.2

Q ss_pred             eEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEE-EEEcCCCeEEEEECCCCeEEEEe---ccCC
Q psy4650          47 EYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYL-ISGADDRLVKIWDYQNKTCVQTL---EGHG  122 (381)
Q Consensus        47 ~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l-~s~~~d~~v~vwd~~~~~~~~~~---~~~~  122 (381)
                      .+.++++.+++|++|++.......+.....|.+.+.+++|+|+|.  +| +++..|+.|++|++........+   ..+.
T Consensus         5 ~v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~--~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~   82 (333)
T d1ri6a_           5 TVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKR--YLYVGVRPEFRVLAYRIAPDDGALTFAAESALP   82 (333)
T ss_dssp             EEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSS--EEEEEETTTTEEEEEEECTTTCCEEEEEEEECS
T ss_pred             EEEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCC--EEEEEECCCCeEEEEEEeCCCCcEEEeeecccC
Confidence            356788899999999986433333334446889999999999987  55 66677999999998765432222   2234


Q ss_pred             CCEEEEEEecCCCEEEEEeC-CCCEEEEeCCCCeeeEE--EecCCcceEEEEEcCCCCEEEEEeC-CCeEEEE
Q psy4650         123 QNISAVCFHPELPIVITGSE-DGSVRVWHSGTHRLEIS--LTYGLERVWTISSLKGSNNVAIGYD-EGSVLLK  191 (381)
Q Consensus       123 ~~v~~~~~~p~~~~l~s~~~-d~~i~vwd~~~~~~~~~--~~~~~~~v~~v~~~~~~~~l~~~~~-dg~v~i~  191 (381)
                      ..+..++|+|+|+++++++. ++.+.+|+.........  ...+...+.++.++|+++.++.++. +..+.+|
T Consensus        83 ~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~  155 (333)
T d1ri6a_          83 GSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLF  155 (333)
T ss_dssp             SCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEE
T ss_pred             CCceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEE
Confidence            45678999999998888875 77899998876655443  3345667888999999998777764 4456663

>d1dkgd2 c.55.1.1 (D:186-383) Heat shock protein 70kDa, ATPase fragment {Escherichia coli, gene dnaK [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Heat shock protein 70kDa, ATPase fragment
species: Escherichia coli, gene dnaK [TaxId: 562]

Probab=99.25  E-value=2.6e-12  Score=103.18  Aligned_cols=114  Identities=17%  Similarity=0.211  Sum_probs=100.3

Q ss_pred             hHHHHHhccCCCcChhHHHHHHHHHhhhhhhccccceeeEEEecccCC----cccccccChHHHHHHHHHHhhhhhhhhH
Q psy4650         241 VHVTIKYRLDISDSHRSVAKLRAAAETCMHVLSTLQSSNVFVESLYDG----LDFHHNVSRARFESLIGGLLTSFVQPCM  316 (381)
Q Consensus       241 ~~d~~~~~~d~~~~~~~~~~l~~~~e~ak~~lS~~~~~~i~~~~l~~g----~~~~~~itr~~fe~l~~~l~~~~~~~~~  316 (381)
                      .....++..++..+++++++|+.++|++|+.||.+.++.+.++.++.+    .++..++||++|++++.|++.++.+.++
T Consensus        57 ~~~~~~~~~~~~~~~~~~~rL~~~~e~~K~~Ls~~~~~~i~~~~~~~~~~~~~~~~~~itr~~~~~~~~~~~~~~~~~i~  136 (198)
T d1dkgd2          57 EEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNLPYITADATGPKHMNIKVTRAKLESLVEDLVNRSIELLK  136 (198)
T ss_dssp             HHHHHHHCCCSTTCHHHHHHHHHHHHHHHHHTTSSSEEEEEEEEEEEETTEEEEEEEEEEHHHHHHHSHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCCccCHHHHHHHHHHHHHHHHHhcCCCeEEEEEeeeecCCCCCceEEEEEcHHHHHHHHHHHHHHHHHHHH
Confidence            344566778888899999999999999999999999999999876654    4688899999999999999999999999


Q ss_pred             hhhccccceeeEeeccccCcceEEeecHHHHHHHHHHHHHH
Q psy4650         317 HVLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIGGLLTS  357 (381)
Q Consensus       317 ~~Ls~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~  357 (381)
                      ++|..   ++++.+.++..+++||+.+.|.+++++++.|++
T Consensus       137 ~~l~~---a~~~~~~Id~v~lvGG~sr~p~l~~~i~~~f~~  174 (198)
T d1dkgd2         137 VALQD---AGLSVSDIDDVILVGGQTRMPMVQKKVAEFFGK  174 (198)
T ss_dssp             HHHHT---TTCCTTTCCEEEEESGGGGSHHHHHHHHHHHSS
T ss_pred             HHHHH---hCCChhHCcEEEEEcCccCCHHHHHHHHHHHCC
Confidence            99987   456667788889999999999999999999973

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.25  E-value=4.1e-11  Score=103.92  Aligned_cols=144  Identities=12%  Similarity=-0.028  Sum_probs=109.2

Q ss_pred             cEEEEEcCCCeEEEEECCCCeEEEEeccC--CCCEEEEEEecCCCEE-EEEeCCCCEEEEeCCCCeeeEEEecCCc----
Q psy4650          93 PYLISGADDRLVKIWDYQNKTCVQTLEGH--GQNISAVCFHPELPIV-ITGSEDGSVRVWHSGTHRLEISLTYGLE----  165 (381)
Q Consensus        93 ~~l~s~~~d~~v~vwd~~~~~~~~~~~~~--~~~v~~~~~~p~~~~l-~s~~~d~~i~vwd~~~~~~~~~~~~~~~----  165 (381)
                      .++++++.|++|++||+.+++.+..+..+  ...+.+++|+|+|+++ ++++.++.|.+||+.+++.+..+..+..    
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~   81 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV   81 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccc
Confidence            48999999999999999999999888653  4557899999999976 5667799999999999999888765432    


Q ss_pred             -ceEEEEEcCCCCEEEEEeCCCeEEEEe--cCCCceEEEecCCCEEEEEecCceeecccccCCccccccCCceEEeeehH
Q psy4650         166 -RVWTISSLKGSNNVAIGYDEGSVLLKV--GREEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSVH  242 (381)
Q Consensus       166 -~v~~v~~~~~~~~l~~~~~dg~v~i~~--~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~  242 (381)
                       .+..++|+|+++.++++..+.....|.  .....+..||..++...+.......       ...+.++|||.++++++.
T Consensus        82 ~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-------~~~~~~s~dg~~l~~~~~  154 (337)
T d1pbyb_          82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQ-------ITMLAWARDGSKLYGLGR  154 (337)
T ss_dssp             ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSS-------CCCEEECTTSSCEEEESS
T ss_pred             cceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccccCC-------ceEEEEcCCCCEEEEEcC
Confidence             345789999999998887655554432  2344556688888887766543321       112567899999988765


Q ss_pred             H
Q psy4650         243 V  243 (381)
Q Consensus       243 d  243 (381)
                      +
T Consensus       155 ~  155 (337)
T d1pbyb_         155 D  155 (337)
T ss_dssp             S
T ss_pred             C
Confidence            4

>d1bupa2 c.55.1.1 (A:189-381) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Heat shock protein 70kDa, ATPase fragment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.22  E-value=5.5e-12  Score=101.03  Aligned_cols=112  Identities=26%  Similarity=0.431  Sum_probs=101.5

Q ss_pred             HHHHHhccCCCcChhHHHHHHHHHhhhhhhccccceeeEEEecccCCcccccccChHHHHHHHHHHhhhhhhhhHhhhcc
Q psy4650         242 HVTIKYRLDISDSHRSVAKLRAAAETCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIGGLLTSFVQPCMHVLST  321 (381)
Q Consensus       242 ~d~~~~~~d~~~~~~~~~~l~~~~e~ak~~lS~~~~~~i~~~~l~~g~~~~~~itr~~fe~l~~~l~~~~~~~~~~~Ls~  321 (381)
                      ....++..++..+++++.+|+.++|++|+.||.+.++.+.++.++.|.++..+++|++|++++.+++.++.++++++|..
T Consensus        56 ~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~~~~~~~~~~~~~~~~~~~~itr~~~e~~~~~~~~~~~~~i~~~l~~  135 (193)
T d1bupa2          56 EFKRKHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRGTLDPVEKALRD  135 (193)
T ss_dssp             HHHHHHSCCCTTCHHHHHHHHHHHHHHHHHHTTSSEEEEEEEEEETTEEEEEEEEHHHHHHHTHHHHHHTHHHHHHHHHH
T ss_pred             HHHHHhCCCCccCHHHHHHHHHHHHHHhhccCCCceEEEEEecccCCCccceEEcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455667888899999999999999999999999999999999999999999999999999999999999999999976


Q ss_pred             ccceeeEeeccccCcceEEeecHHHHHHHHHHHHH
Q psy4650         322 LQSSNVFVESLYDGLDFHHNVSRARFESLIGGLLT  356 (381)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~  356 (381)
                         +.+..+.++.++.+||+.+.|.+++++++.|+
T Consensus       136 ---~~~~~~~i~~V~lvGG~sr~p~v~~~i~~~f~  167 (193)
T d1bupa2         136 ---AKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFN  167 (193)
T ss_dssp             ---HTCCGGGCCEEEEESGGGGCHHHHHHHHHHTT
T ss_pred             ---cCCCHHHCCEEEEECCccccHHHHHHHHHHcC
Confidence               45556677788899999999999999999996

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.03  E-value=3.2e-08  Score=86.86  Aligned_cols=116  Identities=11%  Similarity=0.065  Sum_probs=78.2

Q ss_pred             eeeecCCCceEEEEE---------ecCCeEEEecCCCccceeeEeeccccccE-------EEEEeeeCCCccEEEEEcCC
Q psy4650          38 DITTNKDMIEYKISY---------QESSRVKAFNPIQVATLILKTLYGHEKGV-------NCVDYYHGGDKPYLISGADD  101 (381)
Q Consensus        38 ~i~~~~~~~~~~~s~---------~~d~~v~i~~~~~~~~~~~~~l~~h~~~v-------~~~~~~~~~~~~~l~s~~~d  101 (381)
                      .+.+.+++..+.++.         ..++.|.+||+..  ...+..+..+....       ..+.|++++...++.....+
T Consensus        70 ~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t--~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~  147 (373)
T d2madh_          70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVT--FLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAG  147 (373)
T ss_pred             cEEEcCCCCEEEEEeecCCcccccccceEEEEEECCC--CcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCC
Confidence            567777755444432         3467899999974  34445555554433       45678888875445555667


Q ss_pred             CeEEEEECCCCeEEEEeccCCCCEEEEEEecCCC-EEEEEeCCCCEEEEeCCCCeeeEE
Q psy4650         102 RLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELP-IVITGSEDGSVRVWHSGTHRLEIS  159 (381)
Q Consensus       102 ~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~p~~~-~l~s~~~d~~i~vwd~~~~~~~~~  159 (381)
                      +.+.+|+..+.+......    ...++.++|++. .+++.+.|+.+.+||..++.....
T Consensus       148 ~~~~~~~~~~~~~~~~~~----~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~  202 (373)
T d2madh_         148 PAVGLVVQGGSSDDQLLS----SPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAG  202 (373)
T ss_pred             CceEEeeccCCeEEEEec----cceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEE
Confidence            788899988776544433    346788999887 456778899999999887665543

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.02  E-value=6.2e-10  Score=96.63  Aligned_cols=99  Identities=9%  Similarity=0.078  Sum_probs=80.7

Q ss_pred             EEeeeCCCccEEEEEcCCCeEEEEECCCCeEEEEecc-CCCCEEEEEEecCCCEE-EEEeCCCCEEEEeCCCCeeeEEEe
Q psy4650          84 VDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEG-HGQNISAVCFHPELPIV-ITGSEDGSVRVWHSGTHRLEISLT  161 (381)
Q Consensus        84 ~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~-~~~~v~~~~~~p~~~~l-~s~~~d~~i~vwd~~~~~~~~~~~  161 (381)
                      ++|+++++  ++++++.+++|.+||+.+++.+.+++. |...+.+++|+|+|+++ ++++.++.|.+||+.+++.+..+.
T Consensus         2 ~a~~~~~~--~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~   79 (346)
T d1jmxb_           2 PALKAGHE--YMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHAN   79 (346)
T ss_dssp             CCCCTTCE--EEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred             ccCCCCCc--EEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeec
Confidence            35677665  899999999999999999999998864 45567899999999976 555678999999999999888775


Q ss_pred             cCCc------ceEEEEEcCCCCEEEEEeC
Q psy4650         162 YGLE------RVWTISSLKGSNNVAIGYD  184 (381)
Q Consensus       162 ~~~~------~v~~v~~~~~~~~l~~~~~  184 (381)
                      ....      .+..++|+|+|+++++++.
T Consensus        80 ~~~~~~~~~~~~~~v~~s~DG~~l~v~~~  108 (346)
T d1jmxb_          80 LSSVPGEVGRSMYSFAISPDGKEVYATVN  108 (346)
T ss_dssp             SCCSTTEEEECSSCEEECTTSSEEEEEEE
T ss_pred             ccccccccCCceEEEEEecCCCEEEEEec
Confidence            4322      3567899999998877754

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.01  E-value=2e-09  Score=92.98  Aligned_cols=98  Identities=11%  Similarity=0.210  Sum_probs=72.7

Q ss_pred             EEEEEcCCCeEEEEECCCCeEEE--EeccCCCCEEEEEEecCCCEEEEEe-CCCCEEEEeCCCCeeeEEE---ecCCcce
Q psy4650          94 YLISGADDRLVKIWDYQNKTCVQ--TLEGHGQNISAVCFHPELPIVITGS-EDGSVRVWHSGTHRLEISL---TYGLERV  167 (381)
Q Consensus        94 ~l~s~~~d~~v~vwd~~~~~~~~--~~~~~~~~v~~~~~~p~~~~l~s~~-~d~~i~vwd~~~~~~~~~~---~~~~~~v  167 (381)
                      .+++++.|++|++|++.+...+.  ....|.+.+..++|+|+|++|++++ .|+.|++|++........+   ......+
T Consensus         6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p   85 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSL   85 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCC
T ss_pred             EEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCc
Confidence            56888999999999987653222  2235778899999999999885554 5899999999865433322   2244557


Q ss_pred             EEEEEcCCCCEEEEEeC-CCeEEEE
Q psy4650         168 WTISSLKGSNNVAIGYD-EGSVLLK  191 (381)
Q Consensus       168 ~~v~~~~~~~~l~~~~~-dg~v~i~  191 (381)
                      ..++|+|+|+++++++. ++.+.+|
T Consensus        86 ~~l~~spDg~~l~v~~~~~~~v~~~  110 (333)
T d1ri6a_          86 THISTDHQGQFVFVGSYNAGNVSVT  110 (333)
T ss_dssp             SEEEECTTSSEEEEEETTTTEEEEE
T ss_pred             eEEEEcCCCCEEeecccCCCceeee
Confidence            78999999999888875 6677773

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.97  E-value=1.2e-08  Score=89.00  Aligned_cols=115  Identities=10%  Similarity=0.004  Sum_probs=81.1

Q ss_pred             ecCCCceEEEEE----ecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEE----------EcCCCeEEE
Q psy4650          41 TNKDMIEYKISY----QESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLIS----------GADDRLVKI  106 (381)
Q Consensus        41 ~~~~~~~~~~s~----~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s----------~~~d~~v~v  106 (381)
                      ..+++..+.++.    +..+++.+||...  ..++.++..+..+  .++|+|++..  |+.          ++.|+.|++
T Consensus         9 ~spdg~~~~v~~~~~~~~~~~v~v~D~~t--g~~~~~~~~g~~~--~~a~SpDg~~--l~v~~~~~~~~~~g~~d~~v~v   82 (355)
T d2bbkh_           9 PAPDARRVYVNDPAHFAAVTQQFVIDGEA--GRVIGMIDGGFLP--NPVVADDGSF--IAHASTVFSRIARGERTDYVEV   82 (355)
T ss_dssp             CCCCTTEEEEEECGGGCSSEEEEEEETTT--TEEEEEEEECSSC--EEEECTTSSC--EEEEEEEEEETTEEEEEEEEEE
T ss_pred             eCCCCCEEEEEecccCCCcCeEEEEECCC--CcEEEEEECCCCC--ceEEcCCCCE--EEEEeCCCccccccCCCCEEEE
Confidence            346655554443    3455799999873  5566777765544  7999999884  433          345889999


Q ss_pred             EECCCCeEEEEeccCCC-------CEEEEEEecCCCEEEEEe--CCCCEEEEeCCCCeeeEEEe
Q psy4650         107 WDYQNKTCVQTLEGHGQ-------NISAVCFHPELPIVITGS--EDGSVRVWHSGTHRLEISLT  161 (381)
Q Consensus       107 wd~~~~~~~~~~~~~~~-------~v~~~~~~p~~~~l~s~~--~d~~i~vwd~~~~~~~~~~~  161 (381)
                      ||..+++.+..+..+..       ....++|+|++..++.++  .+..+.+||..+++....+.
T Consensus        83 ~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  146 (355)
T d2bbkh_          83 FDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLD  146 (355)
T ss_dssp             ECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEE
T ss_pred             EECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEe
Confidence            99999988877654332       235678999999776654  46789999999887765543

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=98.92  E-value=9.9e-08  Score=83.62  Aligned_cols=145  Identities=12%  Similarity=-0.016  Sum_probs=101.9

Q ss_pred             eeeecCCCceEEEEE----ecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEE----------cCCCe
Q psy4650          38 DITTNKDMIEYKISY----QESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISG----------ADDRL  103 (381)
Q Consensus        38 ~i~~~~~~~~~~~s~----~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~----------~~d~~  103 (381)
                      .+...+++..+.++.    +..+.+.+||...  ...+.++.++..+  .+.|+|+|.  +++.+          +.++.
T Consensus        25 ~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~t--g~~~~~~~~~~~~--~~a~SpDG~--~l~va~~~~~~~~~~~~~~~   98 (373)
T d2madh_          25 DEAPGADGRRSYINLPAHHSAIIQQWVLDAGS--GSILGHVNGGFLP--NPVAAHSGS--EFALASTSFSRIAKGKRTDY   98 (373)
T ss_pred             ccccCCCCCEEEEEcccccCCCceEEEEECCC--CCEEEEEeCCCCc--cEEEcCCCC--EEEEEeecCCcccccccceE
Confidence            344566666555442    2345788998764  5566777766554  789999988  56554          34688


Q ss_pred             EEEEECCCCeEEEEeccCCCCE-------EEEEEecCCCEEEEE--eCCCCEEEEeCCCCeeeEEEecCCcceEEEEEcC
Q psy4650         104 VKIWDYQNKTCVQTLEGHGQNI-------SAVCFHPELPIVITG--SEDGSVRVWHSGTHRLEISLTYGLERVWTISSLK  174 (381)
Q Consensus       104 v~vwd~~~~~~~~~~~~~~~~v-------~~~~~~p~~~~l~s~--~~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~  174 (381)
                      |.+||..+++.+..+..+....       ..+.|+|+++.++..  ..++.+.+|+..+++.....    ....++.++|
T Consensus        99 v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~s~  174 (373)
T d2madh_          99 VEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLL----SSPTCYHIHP  174 (373)
T ss_pred             EEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEEe----ccceeEEEec
Confidence            9999999999888887665543       447888888855444  44678899998877655433    3456788999


Q ss_pred             CCCE-EEEEeCCCeEEEEe
Q psy4650         175 GSNN-VAIGYDEGSVLLKV  192 (381)
Q Consensus       175 ~~~~-l~~~~~dg~v~i~~  192 (381)
                      +|+. +++.+.||.+.+|+
T Consensus       175 ~g~~~~v~~~~dg~~~~~~  193 (373)
T d2madh_         175 GAPSTFYLLCAQGGLAKTD  193 (373)
T ss_pred             CCCcEEEEEcCCCeEEEEE
Confidence            9875 46788899998843

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.84  E-value=8.2e-09  Score=94.13  Aligned_cols=143  Identities=13%  Similarity=0.040  Sum_probs=105.8

Q ss_pred             ceeeeecCCCceEEEEEecCCeEEEecCCCccceee---EeeccccccEEEEEeeeCCCccEEEEEc---------CCCe
Q psy4650          36 KVDITTNKDMIEYKISYQESSRVKAFNPIQVATLIL---KTLYGHEKGVNCVDYYHGGDKPYLISGA---------DDRL  103 (381)
Q Consensus        36 ~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~---~~l~~h~~~v~~~~~~~~~~~~~l~s~~---------~d~~  103 (381)
                      .+.+...++ +.++.  ..++.+.+||+.......+   .++.+|...|.++.||||+.  +|+.++         .++.
T Consensus        19 ~~~~~W~~d-~~~~~--~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~--~i~~~~~~~~~~r~s~~~~   93 (470)
T d2bgra1          19 LYSLRWISD-HEYLY--KQENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQ--FILLEYNYVKQWRHSYTAS   93 (470)
T ss_dssp             CCCCEECSS-SEEEE--ESSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSS--EEEEEEEEEECSSSCEEEE
T ss_pred             ccCCEeCCC-CEEEE--EcCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCC--EEEEEECCcceeeeccCce
Confidence            345556665 45665  4578899999976544332   24556778899999999988  676653         3578


Q ss_pred             EEEEECCCCeEEEEeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEecC------------------Cc
Q psy4650         104 VKIWDYQNKTCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYG------------------LE  165 (381)
Q Consensus       104 v~vwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~------------------~~  165 (381)
                      +.+||+.+++ ...+..|...+..+.|+|+|..+|... ++.+.+|+..++........+                  .+
T Consensus        94 ~~l~d~~~~~-~~~l~~~~~~~~~~~~SPDG~~ia~~~-~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~  171 (470)
T d2bgra1          94 YDIYDLNKRQ-LITEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFS  171 (470)
T ss_dssp             EEEEETTTTE-ECCSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSS
T ss_pred             EEEEECCCCc-ccccccCCccccccccccCcceeeEee-cccceEEECCCCceeeeeeccCCCcccccccceeeeeeecC
Confidence            8999999887 455777888999999999999998864 678999999988765533221                  12


Q ss_pred             ceEEEEEcCCCCEEEEEeCC
Q psy4650         166 RVWTISSLKGSNNVAIGYDE  185 (381)
Q Consensus       166 ~v~~v~~~~~~~~l~~~~~d  185 (381)
                      ....+.|+|+|+.++....|
T Consensus       172 ~~~~~~wSPDGk~ia~~~~d  191 (470)
T d2bgra1         172 AYSALWWSPNGTFLAYAQFN  191 (470)
T ss_dssp             SSBCEEECTTSSEEEEEEEE
T ss_pred             CccccEECCCCCccceeEec
Confidence            34567899999999988654

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.81  E-value=5.3e-09  Score=95.42  Aligned_cols=147  Identities=9%  Similarity=0.104  Sum_probs=101.1

Q ss_pred             EEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEEEec-----cCCCCEEEEEEecCCCEEEEEeC---------CCCEEE
Q psy4650          83 CVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE-----GHGQNISAVCFHPELPIVITGSE---------DGSVRV  148 (381)
Q Consensus        83 ~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~-----~~~~~v~~~~~~p~~~~l~s~~~---------d~~i~v  148 (381)
                      ++.|.++++  ++..  .|+.+.+||..+++....+.     .|...|.++.|+|||+.|+.++.         ++.+.+
T Consensus        21 ~~~W~~d~~--~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l   96 (470)
T d2bgra1          21 SLRWISDHE--YLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDI   96 (470)
T ss_dssp             CCEECSSSE--EEEE--SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEE
T ss_pred             CCEeCCCCE--EEEE--cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEE
Confidence            567888765  5543  47889999999998766554     34578999999999998887743         567889


Q ss_pred             EeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCceEEEecCCCEEEEEecCceee----------
Q psy4650         149 WHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKVGREEPAVSMDVNGCKIIWARHSEVQQ----------  218 (381)
Q Consensus       149 wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~~~~~~~~~~d~~~~~~~~~~~~~~~~----------  218 (381)
                      ||+.+++. ..+..+...+..+.|+|+|+.+|... ++.+.+          ++..++............          
T Consensus        97 ~d~~~~~~-~~l~~~~~~~~~~~~SPDG~~ia~~~-~~~l~~----------~~~~~g~~~~~t~~~~~~~~~~g~~d~~  164 (470)
T d2bgra1          97 YDLNKRQL-ITEERIPNNTQWVTWSPVGHKLAYVW-NNDIYV----------KIEPNLPSYRITWTGKEDIIYNGITDWV  164 (470)
T ss_dssp             EETTTTEE-CCSSCCCTTEEEEEECSSTTCEEEEE-TTEEEE----------ESSTTSCCEECCSCCBTTTEEESBCCHH
T ss_pred             EECCCCcc-cccccCCccccccccccCcceeeEee-cccceE----------EECCCCceeeeeeccCCCccccccccee
Confidence            99999874 44667788899999999999999865 566777          444444322111111000          


Q ss_pred             --cccccCCccccccCCceEEeeehHHHH
Q psy4650         219 --ANLKTMPEVFENITAGVVLTLSVHVTI  245 (381)
Q Consensus       219 --~~~~~~~~~~~~~~dg~~l~~~~~d~~  245 (381)
                        ....+....+.|+|||+.+++...+..
T Consensus       165 ~~~~~~~~~~~~~wSPDGk~ia~~~~d~~  193 (470)
T d2bgra1         165 YEEEVFSAYSALWWSPNGTFLAYAQFNDT  193 (470)
T ss_dssp             HHHHTSSSSBCEEECTTSSEEEEEEEECT
T ss_pred             eeeeecCCccccEECCCCCccceeEecCC
Confidence              011112222568999999998876543

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.70  E-value=2.1e-08  Score=87.35  Aligned_cols=126  Identities=13%  Similarity=0.123  Sum_probs=86.0

Q ss_pred             eEEEEEecCCeEEEecCCCccceeeEeecccc----------ccEEEEEeeeCCCccEEEEEc--------CCCeEEEEE
Q psy4650          47 EYKISYQESSRVKAFNPIQVATLILKTLYGHE----------KGVNCVDYYHGGDKPYLISGA--------DDRLVKIWD  108 (381)
Q Consensus        47 ~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~----------~~v~~~~~~~~~~~~~l~s~~--------~d~~v~vwd  108 (381)
                      ..++.++.++.+++|+........+....+|.          .....+++++++...++....        ....|.+||
T Consensus       207 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d  286 (355)
T d2bbkh_         207 GRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLD  286 (355)
T ss_dssp             TEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEE
T ss_pred             CeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEe
Confidence            35667788999999998754444433333332          223446778877732222211        124799999


Q ss_pred             CCCCeEEEEeccCCCCEEEEEEecCCC--EEEEEeCCCCEEEEeCCCCeeeEEEecCCcceEEEEEc
Q psy4650         109 YQNKTCVQTLEGHGQNISAVCFHPELP--IVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSL  173 (381)
Q Consensus       109 ~~~~~~~~~~~~~~~~v~~~~~~p~~~--~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~  173 (381)
                      ..+++.+..+.. ...+.+++|+|+|+  ++++++.|+.|.+||..+++.+.++..+......+...
T Consensus       287 ~~t~~~~~~~~~-~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~~~G~~p~~i~~~  352 (355)
T d2bbkh_         287 AKTGERLAKFEM-GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTA  352 (355)
T ss_dssp             TTTCCEEEEEEE-EEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCCSSCCEEECC
T ss_pred             CCCCcEEEEecC-CCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCEEEEEeCcCCCccEEEeC
Confidence            999998887763 45678999999997  45667779999999999999999887654444444443

>d1dkgd2 c.55.1.1 (D:186-383) Heat shock protein 70kDa, ATPase fragment {Escherichia coli, gene dnaK [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Heat shock protein 70kDa, ATPase fragment
species: Escherichia coli, gene dnaK [TaxId: 562]

Probab=98.67  E-value=2.1e-08  Score=79.85  Aligned_cols=75  Identities=19%  Similarity=0.266  Sum_probs=66.6

Q ss_pred             HHhhhhhhhhHhhhccccceeeEeeccccC----cceEEeecHHHHHHHHHHHHHHhHHHHHHHHHhCCCCcccccccc
Q psy4650         306 GLLTSFVQPCMHVLSTLQSSNVFVESLYDG----LDFHHNVSRARFESLIGGLLTSFVQPIEDVLSRSNITHDQINKFT  380 (381)
Q Consensus       306 ~l~~~~~~~~~~~Ls~~~~~~~~~~~~~~~----~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~v~  380 (381)
                      ..+.+.++.+|+.|+....+.++++.+...    .++..+++|++|+++++++++++.++++++|++|++++++||.|+
T Consensus        75 ~rL~~~~e~~K~~Ls~~~~~~i~~~~~~~~~~~~~~~~~~itr~~~~~~~~~~~~~~~~~i~~~l~~a~~~~~~Id~v~  153 (198)
T d1dkgd2          75 QRLKEAAEKAKIELSSAQQTDVNLPYITADATGPKHMNIKVTRAKLESLVEDLVNRSIELLKVALQDAGLSVSDIDDVI  153 (198)
T ss_dssp             HHHHHHHHHHHHHTTSSSEEEEEEEEEEEETTEEEEEEEEEEHHHHHHHSHHHHHHHHHHHHHHHHTTTCCTTTCCEEE
T ss_pred             HHHHHHHHHHHHHhcCCCeEEEEEeeeecCCCCCceEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHCcEEE
Confidence            346678888999999999999999876544    357789999999999999999999999999999999999999986

>d1bupa2 c.55.1.1 (A:189-381) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Heat shock protein 70kDa, ATPase fragment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.65  E-value=2.6e-08  Score=79.06  Aligned_cols=76  Identities=28%  Similarity=0.506  Sum_probs=70.8

Q ss_pred             HHHhhhhhhhhHhhhccccceeeEeeccccCcceEEeecHHHHHHHHHHHHHHhHHHHHHHHHhCCCCcccccccc
Q psy4650         305 GGLLTSFVQPCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIGGLLTSFVQPIEDVLSRSNITHDQINKFT  380 (381)
Q Consensus       305 ~~l~~~~~~~~~~~Ls~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~v~  380 (381)
                      ...+.+.++.+|+.|+....+.+.++.+..+.++...++|.+||+++++++++++++++++|+++++.+++||.|+
T Consensus        72 ~~~l~~~~e~~K~~ls~~~~~~~~~~~~~~~~~~~~~itr~~~e~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~  147 (193)
T d1bupa2          72 VRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRGTLDPVEKALRDAKLDKSQIHDIV  147 (193)
T ss_dssp             HHHHHHHHHHHHHHHTTSSEEEEEEEEEETTEEEEEEEEHHHHHHHTHHHHHHTHHHHHHHHHHHTCCGGGCCEEE
T ss_pred             HHHHHHHHHHHhhccCCCceEEEEEecccCCCccceEEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEE
Confidence            3456678899999999999999999999999999999999999999999999999999999999999999999885

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.51  E-value=4.3e-07  Score=79.59  Aligned_cols=134  Identities=7%  Similarity=-0.119  Sum_probs=89.8

Q ss_pred             EEEecCCe--EEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEE----------cCCCeEEEEECCCCeEEEE
Q psy4650          50 ISYQESSR--VKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISG----------ADDRLVKIWDYQNKTCVQT  117 (381)
Q Consensus        50 ~s~~~d~~--v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~----------~~d~~v~vwd~~~~~~~~~  117 (381)
                      +....+++  +.+||..  ....+..+.++...  .++|+|++.  .++..          +.|++|.+||..++++...
T Consensus        38 ~~~~~~g~~~~~~~d~~--~~~~~~~~~~~~~~--~~a~spDg~--~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~  111 (368)
T d1mdah_          38 LPAYFAGTTENWVSCAG--CGVTLGHSLGAFLS--LAVAGHSGS--DFALASTSFARSAKGKRTDYVEVFDPVTFLPIAD  111 (368)
T ss_dssp             ECTTTCSSEEEEEEETT--TTEEEEEEEECTTC--EEEECTTSS--CEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEE
T ss_pred             eeccCCCcceEEEEeCC--CCcEEEEEeCCCCC--cceECCCCC--EEEEEcccCccccccccCCeEEEEECCCCcEeee
Confidence            33455555  5555665  45666777766655  588999987  34432          4578899999999998887


Q ss_pred             eccCCC-------CEEEEEEecCCCEEEEEe-CCCCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCCCeEE
Q psy4650         118 LEGHGQ-------NISAVCFHPELPIVITGS-EDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVL  189 (381)
Q Consensus       118 ~~~~~~-------~v~~~~~~p~~~~l~s~~-~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~  189 (381)
                      +..+..       ....++|+|+|++++.+. .++.+.+||+.+++....+..+.....   +......++..+.||.+.
T Consensus       112 i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~Dg~~~  188 (368)
T d1mdah_         112 IELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHI---HPGAAATHYLGSCPASLA  188 (368)
T ss_dssp             EEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCC---EEEETTEEECCCCTTSCE
T ss_pred             ecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcceE---ccCCCceEEEEcCCCCEE
Confidence            754432       224689999999887775 579999999999998888765433211   111233455556666666


Q ss_pred             EEe
Q psy4650         190 LKV  192 (381)
Q Consensus       190 i~~  192 (381)
                      ++.
T Consensus       189 ~~~  191 (368)
T d1mdah_         189 ASD  191 (368)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            643

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.43  E-value=6.2e-07  Score=78.53  Aligned_cols=155  Identities=8%  Similarity=-0.140  Sum_probs=99.4

Q ss_pred             ccccEEEEEeeeCCCccEEEE-EcCCCe--EEEEECCCCeEEEEeccCCCCEEEEEEecCCCEEEEEe----------CC
Q psy4650          77 HEKGVNCVDYYHGGDKPYLIS-GADDRL--VKIWDYQNKTCVQTLEGHGQNISAVCFHPELPIVITGS----------ED  143 (381)
Q Consensus        77 h~~~v~~~~~~~~~~~~~l~s-~~~d~~--v~vwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~----------~d  143 (381)
                      +.++...++..+++...+++. +..+++  +.+||..+++.+..+.++..+  .++|+|+|+.++..+          .|
T Consensus        18 ~~g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d   95 (368)
T d1mdah_          18 SDGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRT   95 (368)
T ss_dssp             CCCCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEE
T ss_pred             cCCCccccccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEEEeCCCCC--cceECCCCCEEEEEcccCccccccccC
Confidence            344445555666766544432 444554  666799999998888877654  588999999777654          36


Q ss_pred             CCEEEEeCCCCeeeEEEecCCc-------ceEEEEEcCCCCEEEEEe-CCCeEEEEecCCCceEEEecCCCEEEEEecCc
Q psy4650         144 GSVRVWHSGTHRLEISLTYGLE-------RVWTISSLKGSNNVAIGY-DEGSVLLKVGREEPAVSMDVNGCKIIWARHSE  215 (381)
Q Consensus       144 ~~i~vwd~~~~~~~~~~~~~~~-------~v~~v~~~~~~~~l~~~~-~dg~v~i~~~~~~~~~~~d~~~~~~~~~~~~~  215 (381)
                      +.|.+||..+++.+..+..+..       ....++|+|+|++++.+. .++.+.+          ||..+++.+......
T Consensus        96 ~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~----------~d~~~~~~~~~~~~~  165 (368)
T d1mdah_          96 DYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAG----------LSVPGASDDQLTKSA  165 (368)
T ss_dssp             EEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEE----------EEETTTEEEEEEECS
T ss_pred             CeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEE----------EECCCCcEeEEeecc
Confidence            7899999999999888764322       234689999999887775 5678877          777777766554332


Q ss_pred             eeeccc-ccCCccccccCCceEEeeehHH
Q psy4650         216 VQQANL-KTMPEVFENITAGVVLTLSVHV  243 (381)
Q Consensus       216 ~~~~~~-~~~~~~~~~~~dg~~l~~~~~d  243 (381)
                      ...... .+....+.+++||..+.....+
T Consensus       166 ~~~~~~~~~~~~~v~~~~Dg~~~~~~~~~  194 (368)
T d1mdah_         166 SCFHIHPGAAATHYLGSCPASLAASDLAA  194 (368)
T ss_dssp             SCCCCEEEETTEEECCCCTTSCEEEECCS
T ss_pred             CcceEccCCCceEEEEcCCCCEEEEEecC
Confidence            211110 1111113455666665554433

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=98.25  E-value=4.3e-05  Score=67.45  Aligned_cols=147  Identities=10%  Similarity=-0.021  Sum_probs=99.3

Q ss_pred             CCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCC-----------------eEE
Q psy4650          43 KDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDR-----------------LVK  105 (381)
Q Consensus        43 ~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~-----------------~v~  105 (381)
                      +++..++++...+++|.++|+..........+ .+......++|+|++...+++..+.+.                 .+.
T Consensus        81 pDGr~lfV~d~~~~rVavIDl~t~k~~~ii~i-P~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~  159 (441)
T d1qnia2          81 YDGKYLFINDKANTRVARIRLDIMKTDKITHI-PNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFT  159 (441)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEEEEEEEC-TTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEE
T ss_pred             CCCCEEEEEcCCCCEEEEEECCCCcEeeEEec-CCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEE
Confidence            45444457777888999999975332222222 456789999999998865666655443                 234


Q ss_pred             EEECCCCeEEEEeccCCCCEEEEEEecCCCEEEEEeCC-----------------------------------------C
Q psy4650         106 IWDYQNKTCVQTLEGHGQNISAVCFHPELPIVITGSED-----------------------------------------G  144 (381)
Q Consensus       106 vwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d-----------------------------------------~  144 (381)
                      .+|..+.+....+... +....+.++|+|+++++.+.+                                         +
T Consensus       160 ~iD~~t~~v~~qI~v~-~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~  238 (441)
T d1qnia2         160 AIDAETMDVAWQVIVD-GNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSK  238 (441)
T ss_dssp             EEETTTCSEEEEEEES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCC
T ss_pred             eecCccceeeEEEecC-CCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCC
Confidence            5788777766666543 346889999999977766532                                         3


Q ss_pred             CEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEE-EEEeCCCeEEEEe
Q psy4650         145 SVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNV-AIGYDEGSVLLKV  192 (381)
Q Consensus       145 ~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l-~~~~~dg~v~i~~  192 (381)
                      .+.+++......+..+.... ....+.++|+|+++ +++..++++.+|+
T Consensus       239 v~vvd~~~~~~v~~~IPvgk-sPhGv~vSPDGkyl~~~~~~~~tvsv~d  286 (441)
T d1qnia2         239 VPVVDGRGESEFTRYIPVPK-NPHGLNTSPDGKYFIANGKLSPTVSVIA  286 (441)
T ss_dssp             CCEEECSSSCSSEEEECCBS-SCCCEEECTTSCEEEEECTTSSBEEEEE
T ss_pred             cEEEEcccCCceEEEEeCCC-CccCceECCCCCEEEEeCCcCCcEEEEE
Confidence            45555555555566665543 35679999999976 4567789999977

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.11  E-value=4.3e-05  Score=62.99  Aligned_cols=197  Identities=12%  Similarity=0.092  Sum_probs=115.8

Q ss_pred             hcceeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCe
Q psy4650          34 ETKVDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKT  113 (381)
Q Consensus        34 ~~~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~  113 (381)
                      ..|+.+...+++..|++..+..+.+..++..... .......+ ......+++++++.  ++++....+.+++++..++.
T Consensus        14 ~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~-~~~~~~~~-~~~p~gvav~~~g~--i~v~d~~~~~i~~~~~~~~~   89 (260)
T d1rwia_          14 LSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTG-TTVLPFNG-LYQPQGLAVDGAGT--VYVTDFNNRVVTLAAGSNNQ   89 (260)
T ss_dssp             CCEEEEEECTTCCEEEEECSSSCEEEEEC----C-EEECCCCS-CCSCCCEEECTTCC--EEEEETTTEEEEECTTCSCC
T ss_pred             CCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCce-EEEeccCC-ccCceEEEEcCCCC--EEEeeeeeceeeeeeeccce
Confidence            4678888888877677777777888888775322 21222222 23356788888765  67777777777776655554


Q ss_pred             EEEEeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCCCeEEEEec
Q psy4650         114 CVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKVG  193 (381)
Q Consensus       114 ~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~~  193 (381)
                      ......+ .....++++.+++.++++-..+..+..++..+................+++.|+|+.+++...++.+..   
T Consensus        90 ~~~~~~~-~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~---  165 (260)
T d1rwia_          90 TVLPFDG-LNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVK---  165 (260)
T ss_dssp             EECCCCS-CCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCCEEEEEGGGTEEEE---
T ss_pred             eeeeeee-eeecccccccccceeEeeccccccccccccccceeeeeeecccCCcceeeecCCCCEeeeccccccccc---
Confidence            4433332 245689999999987776666666777776554432222222345577888898887777777777766   


Q ss_pred             CCCceEEEecCCCEEEEEecCceeecccccCCccccccCCceEEeeehHHHHHhccCC
Q psy4650         194 REEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSVHVTIKYRLDI  251 (381)
Q Consensus       194 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~d~~~~~~d~  251 (381)
                             ++.++.........     .+ ..+..+++.++|.+.++.....+++.++.
T Consensus       166 -------~d~~~~~~~~~~~~-----~~-~~p~gi~~d~~g~l~vsd~~~~~i~~~~~  210 (260)
T d1rwia_         166 -------LEAESNNQVVLPFT-----DI-TAPWGIAVDEAGTVYVTEHNTNQVVKLLA  210 (260)
T ss_dssp             -------ECTTTCCEEECCCS-----SC-CSEEEEEECTTCCEEEEETTTTEEEEECT
T ss_pred             -------cccccceeeeeecc-----cc-CCCccceeeeeeeeeeeecCCCEEEEEeC
Confidence                   66554332211101     11 11122455677776666665555554443

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.10  E-value=0.00017  Score=62.47  Aligned_cols=104  Identities=9%  Similarity=-0.003  Sum_probs=67.3

Q ss_pred             ccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCC-eE--EEEe--ccCCCCEEEEEEecCCCEEEEEe-CCCCEEEEeCC
Q psy4650          79 KGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNK-TC--VQTL--EGHGQNISAVCFHPELPIVITGS-EDGSVRVWHSG  152 (381)
Q Consensus        79 ~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~-~~--~~~~--~~~~~~v~~~~~~p~~~~l~s~~-~d~~i~vwd~~  152 (381)
                      ..++++.|+|++.. ++++......|.+|+.... ..  ....  .........+.|+|+++++.... .+++|.+|++.
T Consensus       145 ~h~h~v~~sPdG~~-l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~  223 (365)
T d1jofa_         145 TGIHGMVFDPTETY-LYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVID  223 (365)
T ss_dssp             CCEEEEEECTTSSE-EEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred             CcceEEEECCCCCE-EEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEec
Confidence            34789999998873 3344445567888875433 22  2222  22345679999999999775554 58899999987


Q ss_pred             CCeeeEE-----Ee--------------cCCcceEEEEEcCCCCEEEEEe
Q psy4650         153 THRLEIS-----LT--------------YGLERVWTISSLKGSNNVAIGY  183 (381)
Q Consensus       153 ~~~~~~~-----~~--------------~~~~~v~~v~~~~~~~~l~~~~  183 (381)
                      .+.....     ..              ........+.++|+|+++.++.
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsn  273 (365)
T d1jofa_         224 PATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASS  273 (365)
T ss_dssp             TTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEE
T ss_pred             CCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEc
Confidence            6543221     11              0112356789999999887764

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.08  E-value=0.00013  Score=59.91  Aligned_cols=196  Identities=8%  Similarity=-0.023  Sum_probs=114.0

Q ss_pred             cceeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeE
Q psy4650          35 TKVDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTC  114 (381)
Q Consensus        35 ~~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~  114 (381)
                      .|..+...+++ .+.++....+.+++++...  ...+... +......++++.+++.  ++++-.....+..++......
T Consensus        58 ~p~gvav~~~g-~i~v~d~~~~~i~~~~~~~--~~~~~~~-~~~~~p~~iavd~~g~--i~v~d~~~~~~~~~~~~~~~~  131 (260)
T d1rwia_          58 QPQGLAVDGAG-TVYVTDFNNRVVTLAAGSN--NQTVLPF-DGLNYPEGLAVDTQGA--VYVADRGNNRVVKLAAGSKTQ  131 (260)
T ss_dssp             SCCCEEECTTC-CEEEEETTTEEEEECTTCS--CCEECCC-CSCCSEEEEEECTTCC--EEEEEGGGTEEEEECTTCSSC
T ss_pred             CceEEEEcCCC-CEEEeeeeeceeeeeeecc--ceeeeee-eeeeecccccccccce--eEeecccccccccccccccee
Confidence            35556666653 4566666666777766532  1222222 2235578899988765  566656666677776654432


Q ss_pred             EEEeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCCCeEEEEecC
Q psy4650         115 VQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKVGR  194 (381)
Q Consensus       115 ~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~~~  194 (381)
                      .............+++.|++..+++...++.|..+|..+..........-.....+++.++|.++++...++.+..    
T Consensus       132 ~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~----  207 (260)
T d1rwia_         132 TVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVK----  207 (260)
T ss_dssp             EECCCCSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEE----
T ss_pred             eeeeecccCCcceeeecCCCCEeeeccccccccccccccceeeeeeccccCCCccceeeeeeeeeeeecCCCEEEE----
Confidence            2211112234478999999998888778888999998765433322234456788999999988777777777766    


Q ss_pred             CCceEEEecCCCEEEEEecCceeecccccCCccccccCCceEEeeehHHHHHhccCCC
Q psy4650         195 EEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSVHVTIKYRLDIS  252 (381)
Q Consensus       195 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~d~~~~~~d~~  252 (381)
                            ++..+.........     .+ ..+..+++.++|.+.++.....++..++..
T Consensus       208 ------~~~~~~~~~~~~~~-----~~-~~P~~i~~d~~g~l~vad~~~~rI~~i~~~  253 (260)
T d1rwia_         208 ------LLAGSTTSTVLPFT-----GL-NTPLAVAVDSDRTVYVADRGNDRVVKLTSL  253 (260)
T ss_dssp             ------ECTTCSCCEECCCC-----SC-CCEEEEEECTTCCEEEEEGGGTEEEEECCC
T ss_pred             ------EeCCCCeEEEEccC-----CC-CCeEEEEEeCCCCEEEEECCCCEEEEEeCC
Confidence                  44433321111000     01 112225566788766665555555544443

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=97.97  E-value=0.00062  Score=58.83  Aligned_cols=159  Identities=8%  Similarity=-0.029  Sum_probs=98.2

Q ss_pred             hhcceeeeecCCCceEEEEEecCCeEEEecCCCccce-eeEeec--cccccEEEEEeeeCCCccEEEEEcCCCeEEEEEC
Q psy4650          33 RETKVDITTNKDMIEYKISYQESSRVKAFNPIQVATL-ILKTLY--GHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDY  109 (381)
Q Consensus        33 ~~~~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~-~~~~l~--~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~  109 (381)
                      ..+++.+.+.+++..++++......|.+|+....... ......  ........+.|+|++.. +.++...+++|.+|++
T Consensus       144 ~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~-~yv~~e~~~~V~v~~~  222 (365)
T d1jofa_         144 NTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNY-LYALMEAGNRICEYVI  222 (365)
T ss_dssp             TCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSE-EEEEETTTTEEEEEEE
T ss_pred             CCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCce-EEEeccCCCEEEEEEe
Confidence            3467788889886656666555668888875432211 112221  23456788999998873 4567778999999998


Q ss_pred             CCCeE--EEE---ec--------------cCCCCEEEEEEecCCCEEEEEeC-C-----CCEEEEeCCCCeeeEE---E-
Q psy4650         110 QNKTC--VQT---LE--------------GHGQNISAVCFHPELPIVITGSE-D-----GSVRVWHSGTHRLEIS---L-  160 (381)
Q Consensus       110 ~~~~~--~~~---~~--------------~~~~~v~~~~~~p~~~~l~s~~~-d-----~~i~vwd~~~~~~~~~---~-  160 (381)
                      ..+..  ...   +.              .+......+.++|+|++++++.. +     ..|..|++.....+..   + 
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~  302 (365)
T d1jofa_         223 DPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLS  302 (365)
T ss_dssp             CTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEE
T ss_pred             cCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEee
Confidence            76532  111   11              11223567899999998877643 2     2377777654221111   1 


Q ss_pred             --ecCCcceEEEEEcC-CCCEEEEE-eCCCeEEEEe
Q psy4650         161 --TYGLERVWTISSLK-GSNNVAIG-YDEGSVLLKV  192 (381)
Q Consensus       161 --~~~~~~v~~v~~~~-~~~~l~~~-~~dg~v~i~~  192 (381)
                        .........++++| +|++|+++ ..++.|.+|.
T Consensus       303 ~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~  338 (365)
T d1jofa_         303 PTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYR  338 (365)
T ss_dssp             ECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEE
T ss_pred             EEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEE
Confidence              11223456789998 78877666 4678888854

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=97.91  E-value=0.00027  Score=62.22  Aligned_cols=136  Identities=10%  Similarity=-0.054  Sum_probs=96.2

Q ss_pred             eEEEEEecCCeEEEecCCCccceeeEeec------------------------------cccccEEEEEeeeCCCccEEE
Q psy4650          47 EYKISYQESSRVKAFNPIQVATLILKTLY------------------------------GHEKGVNCVDYYHGGDKPYLI   96 (381)
Q Consensus        47 ~~~~s~~~d~~v~i~~~~~~~~~~~~~l~------------------------------~h~~~v~~~~~~~~~~~~~l~   96 (381)
                      ..+++++.+|.|++|++.  +.+.+..+.                              .|.........+|||.. +++
T Consensus        12 y~f~Sgg~sG~V~V~dlp--S~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~-lfV   88 (441)
T d1qnia2          12 YGFWSGGHQGEVRVLGVP--SMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKY-LFI   88 (441)
T ss_dssp             EEEEECBTTCCEEEEEET--TTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEE-EEE
T ss_pred             EEEEeCCCCCcEEEEeCC--CCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCE-EEE
Confidence            346788899999999974  233333321                              14455566667888762 446


Q ss_pred             EEcCCCeEEEEECCCCeEEEEecc-CCCCEEEEEEecCCC--EEEEEeCCC-----------------CEEEEeCCCCee
Q psy4650          97 SGADDRLVKIWDYQNKTCVQTLEG-HGQNISAVCFHPELP--IVITGSEDG-----------------SVRVWHSGTHRL  156 (381)
Q Consensus        97 s~~~d~~v~vwd~~~~~~~~~~~~-~~~~v~~~~~~p~~~--~l~s~~~d~-----------------~i~vwd~~~~~~  156 (381)
                      +...+..|.++|+.++++...+.. +....+.++|+|+++  +++..+.+.                 .+..+|..+...
T Consensus        89 ~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v  168 (441)
T d1qnia2          89 NDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDV  168 (441)
T ss_dssp             EETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSE
T ss_pred             EcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCcccee
Confidence            777899999999999988776643 456789999999998  555555432                 234578888777


Q ss_pred             eEEEecCCcceEEEEEcCCCCEEEEEeCCC
Q psy4650         157 EISLTYGLERVWTISSLKGSNNVAIGYDEG  186 (381)
Q Consensus       157 ~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg  186 (381)
                      ...+... .....+.++|+|+++.+++.+.
T Consensus       169 ~~qI~v~-~~p~~v~~spdGk~a~vt~~ns  197 (441)
T d1qnia2         169 AWQVIVD-GNLDNTDADYTGKYATSTCYNS  197 (441)
T ss_dssp             EEEEEES-SCCCCEEECSSSSEEEEEESCT
T ss_pred             eEEEecC-CCccceEECCCCCEEEEEecCC
Confidence            7666544 4577899999999998887653

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.88  E-value=0.0017  Score=53.54  Aligned_cols=148  Identities=14%  Similarity=0.163  Sum_probs=100.8

Q ss_pred             cceeeeecCCCceEEEEEecCCeEEEecCCCccceeeEee--ccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCC
Q psy4650          35 TKVDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTL--YGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNK  112 (381)
Q Consensus        35 ~~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l--~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~  112 (381)
                      .+..+...+++ .+.++....+.+.++++.   ...+.++  ..+......+++.+++.  .+++....+.|.+|+.. +
T Consensus       115 ~p~~~avd~~G-~i~v~~~~~~~~~~~~~~---g~~~~~~g~~~~~~~~~~i~~d~~g~--i~v~d~~~~~V~~~d~~-G  187 (279)
T d1q7fa_         115 HPRGVTVDNKG-RIIVVECKVMRVIIFDQN---GNVLHKFGCSKHLEFPNGVVVNDKQE--IFISDNRAHCVKVFNYE-G  187 (279)
T ss_dssp             CEEEEEECTTS-CEEEEETTTTEEEEECTT---SCEEEEEECTTTCSSEEEEEECSSSE--EEEEEGGGTEEEEEETT-C
T ss_pred             ccceeccccCC-cEEEEeeccceeeEeccC---Cceeecccccccccccceeeecccee--EEeeeccccceeeeecC-C
Confidence            34555555553 355555566677778764   3334443  34667788888887665  77788889999999975 5


Q ss_pred             eEEEEec--cCCCCEEEEEEecCCCEEEEEeC-CCCEEEEeCCCCeeeEEEecC--CcceEEEEEcCCCCEEEEEeCCCe
Q psy4650         113 TCVQTLE--GHGQNISAVCFHPELPIVITGSE-DGSVRVWHSGTHRLEISLTYG--LERVWTISSLKGSNNVAIGYDEGS  187 (381)
Q Consensus       113 ~~~~~~~--~~~~~v~~~~~~p~~~~l~s~~~-d~~i~vwd~~~~~~~~~~~~~--~~~v~~v~~~~~~~~l~~~~~dg~  187 (381)
                      +.+..+.  ++......+++.|+|..+++-.. ++.|.+|+. +|+.+.++...  ......+++.|+|.+++ ++.++.
T Consensus       188 ~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~-~G~~~~~~~~~~~~~~p~~vav~~dG~l~V-~~~n~~  265 (279)
T d1q7fa_         188 QYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDDGSVVL-ASKDYR  265 (279)
T ss_dssp             CEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETTTEEEE-EETTTE
T ss_pred             ceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECC-CCCEEEEEeCCCCCCCEeEEEEeCCCcEEE-EeCCCe
Confidence            5566663  34455789999999997766443 557999985 57777766432  34578899999987554 557888


Q ss_pred             EEEE
Q psy4650         188 VLLK  191 (381)
Q Consensus       188 v~i~  191 (381)
                      |+++
T Consensus       266 v~~f  269 (279)
T d1q7fa_         266 LYIY  269 (279)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            8883

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.83  E-value=0.0035  Score=51.57  Aligned_cols=150  Identities=9%  Similarity=0.019  Sum_probs=98.7

Q ss_pred             cceeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeecc------ccccEEEEEeeeCCCccEEEEEcCCCeEEEEE
Q psy4650          35 TKVDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYG------HEKGVNCVDYYHGGDKPYLISGADDRLVKIWD  108 (381)
Q Consensus        35 ~~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~------h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd  108 (381)
                      .|..+...++ +++.++-..+..|++|++.   ...+..+..      ....-..+.+.++....+++..+.++.|..++
T Consensus        24 ~P~gvavd~d-g~i~VaD~~n~rI~v~d~~---G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~   99 (279)
T d1q7fa_          24 EPSGVAVNAQ-NDIIVADTNNHRIQIFDKE---GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN   99 (279)
T ss_dssp             CEEEEEECTT-CCEEEEEGGGTEEEEECTT---SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC
T ss_pred             CccEEEEcCC-CCEEEEECCCCEEEEEeCC---CCEEEEecccCCCcccccccccccccccccccceeccCCcccccccc
Confidence            4778888776 4466776778899999975   333333321      12234455555554432344455667787777


Q ss_pred             CCCCeEEEEec-cCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEe--cCCcceEEEEEcCCCCEEEEEeCC
Q psy4650         109 YQNKTCVQTLE-GHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLT--YGLERVWTISSLKGSNNVAIGYDE  185 (381)
Q Consensus       109 ~~~~~~~~~~~-~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~--~~~~~v~~v~~~~~~~~l~~~~~d  185 (381)
                      .. +.....+. ........+++.+++..+++....+.+.+++.. ++.+..+.  .+......+++.+++..+++....
T Consensus       100 ~~-g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~-g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~  177 (279)
T d1q7fa_         100 QY-GQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRA  177 (279)
T ss_dssp             TT-SCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGG
T ss_pred             cc-ccceeecCCCcccccceeccccCCcEEEEeeccceeeEeccC-CceeecccccccccccceeeeccceeEEeeeccc
Confidence            64 55555553 234566889999999888877777788888864 45555553  244567788888888888888888


Q ss_pred             CeEEE
Q psy4650         186 GSVLL  190 (381)
Q Consensus       186 g~v~i  190 (381)
                      +.+.+
T Consensus       178 ~~V~~  182 (279)
T d1q7fa_         178 HCVKV  182 (279)
T ss_dssp             TEEEE
T ss_pred             cceee
Confidence            88887

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=97.71  E-value=0.0025  Score=53.14  Aligned_cols=114  Identities=12%  Similarity=0.140  Sum_probs=81.3

Q ss_pred             eeeecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCe-EEE
Q psy4650          38 DITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKT-CVQ  116 (381)
Q Consensus        38 ~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~-~~~  116 (381)
                      .+...+++ .++++...+++|..|++.. .   ...+....+.+.+++|.+++.  ++++...++.+..|+..... ...
T Consensus        32 ~iAv~pdG-~l~vt~~~~~~I~~i~p~g-~---~~~~~~~~~~~~gla~~~dG~--l~v~~~~~~~~~~~~~~~~~~~~~  104 (302)
T d2p4oa1          32 NLASAPDG-TIFVTNHEVGEIVSITPDG-N---QQIHATVEGKVSGLAFTSNGD--LVATGWNADSIPVVSLVKSDGTVE  104 (302)
T ss_dssp             EEEECTTS-CEEEEETTTTEEEEECTTC-C---EEEEEECSSEEEEEEECTTSC--EEEEEECTTSCEEEEEECTTSCEE
T ss_pred             CEEECCCC-CEEEEeCCCCEEEEEeCCC-C---EEEEEcCCCCcceEEEcCCCC--eEEEecCCceEEEEEeccccccee
Confidence            46667774 5788888899999999853 2   233445567899999999887  77777777877777654331 112


Q ss_pred             Ee--ccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeE
Q psy4650         117 TL--EGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEI  158 (381)
Q Consensus       117 ~~--~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~  158 (381)
                      .+  .........+.+.+++.++++-+.++.+..+|..++....
T Consensus       105 ~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~  148 (302)
T d2p4oa1         105 TLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSI  148 (302)
T ss_dssp             EEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             eccccCCccccceeEEccCCCEEeeccccccceeeeccCCccee
Confidence            22  1234567889999999988888888899999988776443

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=97.64  E-value=0.0021  Score=53.62  Aligned_cols=107  Identities=14%  Similarity=0.091  Sum_probs=78.7

Q ss_pred             cEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEEEeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCe--ee
Q psy4650          80 GVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHR--LE  157 (381)
Q Consensus        80 ~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~--~~  157 (381)
                      .+..+++.|+|.  ++++...+++|..|+....  ...+....+.+.+++|+|+|.++++...++.+..|+.....  ..
T Consensus        29 ~~e~iAv~pdG~--l~vt~~~~~~I~~i~p~g~--~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~  104 (302)
T d2p4oa1          29 FLENLASAPDGT--IFVTNHEVGEIVSITPDGN--QQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVE  104 (302)
T ss_dssp             CEEEEEECTTSC--EEEEETTTTEEEEECTTCC--EEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEE
T ss_pred             CcCCEEECCCCC--EEEEeCCCCEEEEEeCCCC--EEEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEeccccccee
Confidence            578999999887  8889999999988886543  33344456788999999999988888888888888765432  21


Q ss_pred             EEE-ecCCcceEEEEEcCCCCEEEEEeCCCeEEE
Q psy4650         158 ISL-TYGLERVWTISSLKGSNNVAIGYDEGSVLL  190 (381)
Q Consensus       158 ~~~-~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i  190 (381)
                      ... .........+.+.++++++++.+.++.+..
T Consensus       105 ~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~  138 (302)
T d2p4oa1         105 TLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWL  138 (302)
T ss_dssp             EEEECTTCSCEEEEEESSSSEEEEEETTTTEEEE
T ss_pred             eccccCCccccceeEEccCCCEEeecccccccee
Confidence            111 123455788889999888877777776665

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.45  E-value=0.012  Score=47.55  Aligned_cols=185  Identities=11%  Similarity=0.044  Sum_probs=98.9

Q ss_pred             eeeecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEE--EEECCCCeEE
Q psy4650          38 DITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVK--IWDYQNKTCV  115 (381)
Q Consensus        38 ~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~--vwd~~~~~~~  115 (381)
                      ...++|++..+.++....+...+|.... .......+..+.+......|+|++.. ++.....++...  .+........
T Consensus        43 sP~wSPDGk~IAf~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~spdg~~-i~~~~~~~~~~~~~~~~~~~~~~~  120 (269)
T d2hqsa1          43 SPAWSPDGSKLAYVTFESGRSALVIQTL-ANGAVRQVASFPRHNGAPAFSPDGSK-LAFALSKTGSLNLYVMDLASGQIR  120 (269)
T ss_dssp             EEEECTTSSEEEEEECTTSSCEEEEEET-TTCCEEEEECCSSCEEEEEECTTSSE-EEEEECTTSSCEEEEEETTTCCEE
T ss_pred             eeEECCCCCEEEEEEeeccCcceeeeec-ccCceeEEeeeecccccceecCCCCe-eeEeeecCCccceeecccccccce
Confidence            4556777666666655555433333221 22233455567788889999999884 333333333332  2333323322


Q ss_pred             EEeccCCCCEEEEEEecCCCEEE-EEeCCCC--EEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCC-CeEEEE
Q psy4650         116 QTLEGHGQNISAVCFHPELPIVI-TGSEDGS--VRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDE-GSVLLK  191 (381)
Q Consensus       116 ~~~~~~~~~v~~~~~~p~~~~l~-s~~~d~~--i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d-g~v~i~  191 (381)
                      . ............+++++..+. +...++.  +.+.+..++.. ..+...........|+|++..++..+.+ |...++
T Consensus       121 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~  198 (269)
T d2hqsa1         121 Q-VTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIA  198 (269)
T ss_dssp             E-CCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC-EECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEE
T ss_pred             e-eeeccccccccccccccccceecccccCCceEeeeecccccc-eeeecccccccccccccccceeEEEeecCCceeee
Confidence            2 223344445666777777444 4444554  45555555533 2333455667778999999987776543 344442


Q ss_pred             ecCCCceEEEecCCCEEEEEecCceeecccccCCccccccCCceEEeeehH
Q psy4650         192 VGREEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSVH  242 (381)
Q Consensus       192 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~  242 (381)
                      .        .+..++.......        .+......|+|||+.|+....
T Consensus       199 ~--------~~~~~~~~~~~~~--------~~~~~~p~~SPDG~~i~f~s~  233 (269)
T d2hqsa1         199 K--------QDLATGGVQVLSS--------TFLDETPSLAPNGTMVIYSSS  233 (269)
T ss_dssp             E--------EETTTCCEEECCC--------SSSCEEEEECTTSSEEEEEEE
T ss_pred             E--------eecccccceEeec--------CccccceEECCCCCEEEEEEc
Confidence            2        5554443221111        111122468999999987654

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=97.41  E-value=0.012  Score=49.15  Aligned_cols=112  Identities=9%  Similarity=0.169  Sum_probs=78.0

Q ss_pred             ccEEEEEeeeCCCc---cEEEEEcCCCeEEEEECCCCeEE------EEecc-CCCCEEEEEEecCCCEEEEEeCCCCEEE
Q psy4650          79 KGVNCVDYYHGGDK---PYLISGADDRLVKIWDYQNKTCV------QTLEG-HGQNISAVCFHPELPIVITGSEDGSVRV  148 (381)
Q Consensus        79 ~~v~~~~~~~~~~~---~~l~s~~~d~~v~vwd~~~~~~~------~~~~~-~~~~v~~~~~~p~~~~l~s~~~d~~i~v  148 (381)
                      ..-+.++|+|+++.   .++++-+..+.|..||+.....+      ..+.+ +....-.+++..+|++.++....+.|.+
T Consensus       172 ~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~  251 (314)
T d1pjxa_         172 QFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEV  251 (314)
T ss_dssp             SSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEE
T ss_pred             ceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEEE
Confidence            34568899987652   24556678888988887543221      12222 2223467899999998888777889999


Q ss_pred             EeCCCCeeeEEEecCCcceEEEEEcCCCCEE-EEEeCCCeEEE
Q psy4650         149 WHSGTHRLEISLTYGLERVWTISSLKGSNNV-AIGYDEGSVLL  190 (381)
Q Consensus       149 wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l-~~~~~dg~v~i  190 (381)
                      ||..++.....+.......++++|.|+++.| ++.+.+|.|..
T Consensus       252 ~dp~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~  294 (314)
T d1pjxa_         252 FGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWK  294 (314)
T ss_dssp             ECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred             EeCCCCEEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEE
Confidence            9999888777777666788999999988744 44455566554

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.26  E-value=0.00017  Score=64.64  Aligned_cols=156  Identities=8%  Similarity=0.026  Sum_probs=88.8

Q ss_pred             EeeeCCCccEEEEEcCCCeEEEEECCCCeEEEEeccC---CCCEEEEEEecCCCEEEEEe---------CCCCEEEEeCC
Q psy4650          85 DYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGH---GQNISAVCFHPELPIVITGS---------EDGSVRVWHSG  152 (381)
Q Consensus        85 ~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~---~~~v~~~~~~p~~~~l~s~~---------~d~~i~vwd~~  152 (381)
                      .|.+++.  ++ --..+|.+.+||+.++.....+..+   .-.+....|+|+++.++...         ..+.+.++|+.
T Consensus        23 ~W~~~~~--~~-~~~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~   99 (465)
T d1xfda1          23 KWISDTE--FI-YREQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIP   99 (465)
T ss_dssp             CBSSSSC--BC-CCCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESS
T ss_pred             EEeCCCc--EE-EEeCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEcc
Confidence            4776655  33 3356788999999888654444332   23567889999999776653         34678899998


Q ss_pred             CCeeeEEEe--cCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCceE--EEecCCCEEEEEecCceeecccccCCccc
Q psy4650         153 THRLEISLT--YGLERVWTISSLKGSNNVAIGYDEGSVLLKVGREEPAV--SMDVNGCKIIWARHSEVQQANLKTMPEVF  228 (381)
Q Consensus       153 ~~~~~~~~~--~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~~~~~~~~--~~d~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (381)
                      ++.......  .....+....|+|+|+.+|... ++.+.+.........  ..+...+..............+.+....+
T Consensus       100 ~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~  178 (465)
T d1xfda1         100 HGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAH  178 (465)
T ss_dssp             SCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEE
T ss_pred             CCceeeccCccCCccccceeeeccCCceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceE
Confidence            887543222  2334455688999999998876 455555332221111  11111111111111111111122222235


Q ss_pred             cccCCceEEeeehHHH
Q psy4650         229 ENITAGVVLTLSVHVT  244 (381)
Q Consensus       229 ~~~~dg~~l~~~~~d~  244 (381)
                      .|||||+.|++...+.
T Consensus       179 ~WSPDgk~iaf~~~D~  194 (465)
T d1xfda1         179 WWSPDGTRLAYAAIND  194 (465)
T ss_dssp             EECTTSSEEEEEEEEC
T ss_pred             EECCCCCeEEEEEecc
Confidence            6899999999876443

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.24  E-value=0.0031  Score=51.23  Aligned_cols=126  Identities=11%  Similarity=-0.007  Sum_probs=74.7

Q ss_pred             CCCceEEEEEecCCeEEEe--cCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEE--EECCCCeEEEEe
Q psy4650          43 KDMIEYKISYQESSRVKAF--NPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKI--WDYQNKTCVQTL  118 (381)
Q Consensus        43 ~~~~~~~~s~~~d~~v~i~--~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~v--wd~~~~~~~~~~  118 (381)
                      .+...+.++...++...+|  ++..   .....+..+........|+|++.. .+......+...+  .+...+.. . +
T Consensus       136 ~~~~~~~~~~~~~g~~~i~~~~~~~---~~~~~~~~~~~~~~~~~~spdg~~-~~~~~~~~~~~~i~~~~~~~~~~-~-~  209 (269)
T d2hqsa1         136 PDSQNLAFTSDQAGRPQVYKVNING---GAPQRITWEGSQNQDADVSSDGKF-MVMVSSNGGQQHIAKQDLATGGV-Q-V  209 (269)
T ss_dssp             TTSSEEEEEECTTSSCEEEEEETTS---SCCEECCCSSSEEEEEEECTTSSE-EEEEEECSSCEEEEEEETTTCCE-E-E
T ss_pred             cccccceecccccCCceEeeeeccc---ccceeeecccccccccccccccce-eEEEeecCCceeeeEeecccccc-e-E
Confidence            3334455555555544444  4332   223344456667788899998873 3334444444444  45544443 2 3


Q ss_pred             ccCCCCEEEEEEecCCCEEEEEeC---CCCEEEEeCCCCeeeEEEecCCcceEEEEEcCC
Q psy4650         119 EGHGQNISAVCFHPELPIVITGSE---DGSVRVWHSGTHRLEISLTYGLERVWTISSLKG  175 (381)
Q Consensus       119 ~~~~~~v~~~~~~p~~~~l~s~~~---d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~  175 (381)
                      ..+........|+|+|+.|+..+.   ...+.++++.++.. ..+......+...+|+|-
T Consensus       210 ~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~-~~lt~~~g~~~~p~WSP~  268 (269)
T d2hqsa1         210 LSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFK-ARLPATDGQVKFPAWSPY  268 (269)
T ss_dssp             CCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCE-EECCCSSSEEEEEEECCC
T ss_pred             eecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCCE-EEEeCCCCcEEeEEeCCC
Confidence            234456678899999997764433   45688999987664 445555667777888873

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.22  E-value=0.00095  Score=59.65  Aligned_cols=138  Identities=7%  Similarity=-0.059  Sum_probs=88.8

Q ss_pred             ecCCCceEEEEEecCCeEEEecCCCccceeeEeecc-ccccEEEEEeeeCCCccEEEEE---------cCCCeEEEEECC
Q psy4650          41 TNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYG-HEKGVNCVDYYHGGDKPYLISG---------ADDRLVKIWDYQ  110 (381)
Q Consensus        41 ~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~-h~~~v~~~~~~~~~~~~~l~s~---------~~d~~v~vwd~~  110 (381)
                      ..++ +.++.. ..+|.+.+|++.......+..... ..-.+....||||+.  +++..         +..+...++|+.
T Consensus        24 W~~~-~~~~~~-~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~--~vl~~~~~~~~~r~s~~~~~~i~d~~   99 (465)
T d1xfda1          24 WISD-TEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDRE--YALFSYNVEPIYQHSYTGYYVLSKIP   99 (465)
T ss_dssp             BSSS-SCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSS--EEEEEESCCCCSSSCCCSEEEEEESS
T ss_pred             EeCC-CcEEEE-eCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCC--eEEEEEcccceeEeeccccEEEEEcc
Confidence            3444 345443 456789999997655444333222 223567788999887  44433         345788899999


Q ss_pred             CCeEEEEec--cCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEecC-Ccc-----------------eEEE
Q psy4650         111 NKTCVQTLE--GHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYG-LER-----------------VWTI  170 (381)
Q Consensus       111 ~~~~~~~~~--~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~-~~~-----------------v~~v  170 (381)
                      ++.......  .....+....|+|+|..+|-.. ++.|.+.+..++...+..... ...                 -..+
T Consensus       100 ~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~  178 (465)
T d1xfda1         100 HGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAH  178 (465)
T ss_dssp             SCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEE
T ss_pred             CCceeeccCccCCccccceeeeccCCceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceE
Confidence            887543322  2334456688999999888765 567888888777655443321 111                 2467


Q ss_pred             EEcCCCCEEEEEe
Q psy4650         171 SSLKGSNNVAIGY  183 (381)
Q Consensus       171 ~~~~~~~~l~~~~  183 (381)
                      .|+|+|+.||...
T Consensus       179 ~WSPDgk~iaf~~  191 (465)
T d1xfda1         179 WWSPDGTRLAYAA  191 (465)
T ss_dssp             EECTTSSEEEEEE
T ss_pred             EECCCCCeEEEEE
Confidence            7999999998875

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=96.98  E-value=0.074  Score=44.22  Aligned_cols=146  Identities=8%  Similarity=0.017  Sum_probs=82.9

Q ss_pred             eeecCCCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcC----CCeEEEEECCCCeE
Q psy4650          39 ITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGAD----DRLVKIWDYQNKTC  114 (381)
Q Consensus        39 i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~----d~~v~vwd~~~~~~  114 (381)
                      +.+++++. +.++-...+.|..|++...  ...............++++++|.  ++++...    .+.+...+..++..
T Consensus        45 ~~~D~~G~-Ly~~D~~~g~I~ri~p~g~--~~~~~~~~~~~~p~gla~~~dG~--l~va~~~~~~~~~~i~~~~~~~~~~  119 (319)
T d2dg1a1          45 LNFDRQGQ-LFLLDVFEGNIFKINPETK--EIKRPFVSHKANPAAIKIHKDGR--LFVCYLGDFKSTGGIFAATENGDNL  119 (319)
T ss_dssp             EEECTTSC-EEEEETTTCEEEEECTTTC--CEEEEEECSSSSEEEEEECTTSC--EEEEECTTSSSCCEEEEECTTSCSC
T ss_pred             CEECCCCC-EEEEECCCCEEEEEECCCC--eEEEEEeCCCCCeeEEEECCCCC--EEEEecCCCccceeEEEEcCCCcee
Confidence            34555544 5555667788888888542  22233334456778999999876  5555432    23445555555443


Q ss_pred             EEEecc--CCCCEEEEEEecCCCEEEEEeC------CCCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEE-EeCC
Q psy4650         115 VQTLEG--HGQNISAVCFHPELPIVITGSE------DGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAI-GYDE  185 (381)
Q Consensus       115 ~~~~~~--~~~~v~~~~~~p~~~~l~s~~~------d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~-~~~d  185 (381)
                      ......  .......+.+.|+|.+.++...      .+.+..++...+. +..+...-...+.++|+|+++.|.. -+..
T Consensus       120 ~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~-~~~~~~~~~~pnGia~s~dg~~lyvad~~~  198 (319)
T d2dg1a1         120 QDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRT-VTPIIQNISVANGIALSTDEKVLWVTETTA  198 (319)
T ss_dssp             EEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCC-EEEEEEEESSEEEEEECTTSSEEEEEEGGG
T ss_pred             eeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccce-eEEEeeccceeeeeeeccccceEEEecccC
Confidence            333322  1234678899999987666432      1234445544333 2222222234577999999886544 4456


Q ss_pred             CeEEE
Q psy4650         186 GSVLL  190 (381)
Q Consensus       186 g~v~i  190 (381)
                      +.|..
T Consensus       199 ~~I~~  203 (319)
T d2dg1a1         199 NRLHR  203 (319)
T ss_dssp             TEEEE
T ss_pred             CceEE
Confidence            66666

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=96.83  E-value=0.077  Score=44.00  Aligned_cols=100  Identities=8%  Similarity=-0.042  Sum_probs=57.2

Q ss_pred             eeecCCCceEEEEEe------cCCeEEEecCCCccceeeEe--eccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECC
Q psy4650          39 ITTNKDMIEYKISYQ------ESSRVKAFNPIQVATLILKT--LYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQ  110 (381)
Q Consensus        39 i~~~~~~~~~~~s~~------~d~~v~i~~~~~~~~~~~~~--l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~  110 (381)
                      +...+++.-|++...      .+++|..|++..........  ...-.+.-..+.|.+++.  .++.+.....+...+..
T Consensus        23 pa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~--~l~vad~~~~i~~~~~~  100 (314)
T d1pjxa_          23 PVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDAN--QLFVADMRLGLLVVQTD  100 (314)
T ss_dssp             EEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSS--EEEEEETTTEEEEEETT
T ss_pred             eEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCC--EEEEEECCCeEEEEeCC
Confidence            455666555554322      14678888886533222221  111223457899998876  56666666678888876


Q ss_pred             CCeEEEEeccCCC----CEEEEEEecCCCEEEEE
Q psy4650         111 NKTCVQTLEGHGQ----NISAVCFHPELPIVITG  140 (381)
Q Consensus       111 ~~~~~~~~~~~~~----~v~~~~~~p~~~~l~s~  140 (381)
                      .+..........+    ..+.+++.|+|.+.++-
T Consensus       101 g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd  134 (314)
T d1pjxa_         101 GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITA  134 (314)
T ss_dssp             SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEE
T ss_pred             CcEEEEEeccccccccCCCcEEEECCCCCEEEec
Confidence            6542221111111    24678999999877664

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=96.58  E-value=0.15  Score=42.20  Aligned_cols=108  Identities=11%  Similarity=0.032  Sum_probs=64.5

Q ss_pred             cEEEEEeeeCCCccEEEEEcC------CCeEEEEECCCCeEEEEeccCCCCEEEEEEecCCCEEE-EEeCCCCEEEEeCC
Q psy4650          80 GVNCVDYYHGGDKPYLISGAD------DRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPIVI-TGSEDGSVRVWHSG  152 (381)
Q Consensus        80 ~v~~~~~~~~~~~~~l~s~~~------d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~-s~~~d~~i~vwd~~  152 (381)
                      ....+.+.++|.  +.++...      .+.+..++...+. +..+...-.....++|+|+++.|. +-+..+.|..||+.
T Consensus       131 ~~nd~~~d~~G~--l~vtd~~~~~~~~~g~v~~~~~dg~~-~~~~~~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~  207 (319)
T d2dg1a1         131 CIDDMVFDSKGG--FYFTDFRGYSTNPLGGVYYVSPDFRT-VTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALE  207 (319)
T ss_dssp             CEEEEEECTTSC--EEEEECCCBTTBCCEEEEEECTTSCC-EEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEEC
T ss_pred             CCcceeEEeccc--eeecccccccccCcceeEEEecccce-eEEEeeccceeeeeeeccccceEEEecccCCceEEEEEc
Confidence            467788888776  4444322      1234444444332 222222223457899999998654 44567899999876


Q ss_pred             CC-eeeEE-------EecCCcceEEEEEcCCCCEEEEEeCCCeEEE
Q psy4650         153 TH-RLEIS-------LTYGLERVWTISSLKGSNNVAIGYDEGSVLL  190 (381)
Q Consensus       153 ~~-~~~~~-------~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i  190 (381)
                      .. .....       ..........+++.++|++.++....+.|.+
T Consensus       208 ~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~  253 (319)
T d2dg1a1         208 DDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLV  253 (319)
T ss_dssp             TTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEE
T ss_pred             CCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEE
Confidence            32 11111       1112233567888899988888888888888

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=96.45  E-value=0.16  Score=41.59  Aligned_cols=137  Identities=9%  Similarity=-0.008  Sum_probs=82.8

Q ss_pred             CceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEEEec--c--
Q psy4650          45 MIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE--G--  120 (381)
Q Consensus        45 ~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~--~--  120 (381)
                      .+.+..+--..+.|..||+...... ..   .....+.++++.+++.  +++ ++.+ -+..+|..+++......  .  
T Consensus        29 ~~~l~wvDi~~~~I~r~d~~~g~~~-~~---~~~~~~~~i~~~~dg~--l~v-a~~~-gl~~~d~~tg~~~~l~~~~~~~  100 (295)
T d2ghsa1          29 SGTAWWFNILERELHELHLASGRKT-VH---ALPFMGSALAKISDSK--QLI-ASDD-GLFLRDTATGVLTLHAELESDL  100 (295)
T ss_dssp             TTEEEEEEGGGTEEEEEETTTTEEE-EE---ECSSCEEEEEEEETTE--EEE-EETT-EEEEEETTTCCEEEEECSSTTC
T ss_pred             CCEEEEEECCCCEEEEEECCCCeEE-EE---ECCCCcEEEEEecCCC--EEE-EEeC-ccEEeecccceeeEEeeeecCC
Confidence            3444444455678888888643221 12   2245678888888765  444 4444 57788999887543322  1  


Q ss_pred             CCCCEEEEEEecCCCEEEEEeC----CCCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEE-eCCCeEEE
Q psy4650         121 HGQNISAVCFHPELPIVITGSE----DGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIG-YDEGSVLL  190 (381)
Q Consensus       121 ~~~~v~~~~~~p~~~~l~s~~~----d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~-~~dg~v~i  190 (381)
                      ....+..+.+.|+|.+.++...    .+.-.+|.+..++....... -.....++|+++++.+..+ +..+.+..
T Consensus       101 ~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~-~~~~Ng~~~s~d~~~l~~~dt~~~~I~~  174 (295)
T d2ghsa1         101 PGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFAD-ISIPNSICFSPDGTTGYFVDTKVNRLMR  174 (295)
T ss_dssp             TTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEE-ESSEEEEEECTTSCEEEEEETTTCEEEE
T ss_pred             CcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeec-cCCcceeeecCCCceEEEeecccceeeE
Confidence            1224678889999997666532    23456777767765444432 2345788999998865444 44555555

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=96.35  E-value=0.019  Score=46.43  Aligned_cols=103  Identities=9%  Similarity=-0.009  Sum_probs=61.8

Q ss_pred             EEecC--CCEEEEEeCCCCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeC-CC---eEEEEecCCCceEEEe
Q psy4650         129 CFHPE--LPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYD-EG---SVLLKVGREEPAVSMD  202 (381)
Q Consensus       129 ~~~p~--~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~-dg---~v~i~~~~~~~~~~~d  202 (381)
                      ..+|+  |..++-.+ ++.|.+.|+.+++.. .+..+........|+|+|+.||.... ++   ...+        ..++
T Consensus         5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g~~~-~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i--------~~~~   74 (281)
T d1k32a2           5 LLNPDIHGDRIIFVC-CDDLWEHDLKSGSTR-KIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADL--------YFYN   74 (281)
T ss_dssp             CEEEEEETTEEEEEE-TTEEEEEETTTCCEE-EEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEE--------EEEE
T ss_pred             ccCCCCCCCEEEEEe-CCcEEEEECCCCCEE-EEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEE--------EEEE
Confidence            35788  88777654 456888899988764 45556677889999999999886542 11   1122        2366


Q ss_pred             cCCCEEEEEecCceeecccccCCccccccCCceEEeeeh
Q psy4650         203 VNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLSV  241 (381)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~  241 (381)
                      ..++...--..................|+|||+.++...
T Consensus        75 ~~~g~~~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~  113 (281)
T d1k32a2          75 GENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTD  113 (281)
T ss_dssp             TTTTEEEECCCCCEEEETTEECSEEEEECTTCCEEEEEC
T ss_pred             ecCCceEEeeecCCCccCccccccccccCCCCCEEEEEE
Confidence            666654322211111111111222246788988887654

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=96.27  E-value=0.039  Score=44.40  Aligned_cols=95  Identities=8%  Similarity=-0.080  Sum_probs=63.2

Q ss_pred             eeeC--CCccEEEEEcCCCeEEEEECCCCeEEEEeccCCCCEEEEEEecCCCEEEEEeC-C-----CCEEEEeCCCCeee
Q psy4650          86 YYHG--GDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPIVITGSE-D-----GSVRVWHSGTHRLE  157 (381)
Q Consensus        86 ~~~~--~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~-d-----~~i~vwd~~~~~~~  157 (381)
                      .+|+  |+  .++-. .++.|.+.|+.+++.. .+..+.+.+...+|+|||+.|+.... +     ..|.+++..++...
T Consensus         6 ~sPdi~G~--~v~f~-~~~dl~~~d~~~g~~~-~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~   81 (281)
T d1k32a2           6 LNPDIHGD--RIIFV-CCDDLWEHDLKSGSTR-KIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIK   81 (281)
T ss_dssp             EEEEEETT--EEEEE-ETTEEEEEETTTCCEE-EEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEE
T ss_pred             cCCCCCCC--EEEEE-eCCcEEEEECCCCCEE-EEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceE
Confidence            5687  77  34433 2456888899988764 45556677899999999998875532 2     23777788777654


Q ss_pred             EEEe------cCCcceEEEEEcCCCCEEEEEeC
Q psy4650         158 ISLT------YGLERVWTISSLKGSNNVAIGYD  184 (381)
Q Consensus       158 ~~~~------~~~~~v~~v~~~~~~~~l~~~~~  184 (381)
                      ....      ..........|+|+|+.++....
T Consensus        82 ~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~  114 (281)
T d1k32a2          82 RITYFSGKSTGRRMFTDVAGFDPDGNLIISTDA  114 (281)
T ss_dssp             ECCCCCEEEETTEECSEEEEECTTCCEEEEECT
T ss_pred             EeeecCCCccCccccccccccCCCCCEEEEEEc
Confidence            4221      11234567889999998877543

>d1dkgd1 c.55.1.1 (D:3-185) Heat shock protein 70kDa, ATPase fragment {Escherichia coli, gene dnaK [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Heat shock protein 70kDa, ATPase fragment
species: Escherichia coli, gene dnaK [TaxId: 562]

Probab=96.04  E-value=0.0011  Score=50.89  Aligned_cols=69  Identities=14%  Similarity=0.257  Sum_probs=50.1

Q ss_pred             chhhhHHHhhhhhcccccccCCChhhHHHHhhhcceeeeecCCCceEEEEEecCCeEEEecCCCccceeeEeec
Q psy4650           2 SRLISQAKNTIIKNKRALNTELTETDIETIVRETKVDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLY   75 (381)
Q Consensus         2 ~~~~~~~~~t~~~~k~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~   75 (381)
                      ++..+||+|+++.+||++|+++.+++++...+..++.+...+++. ..+...  +  +.|.+.+.....+..++
T Consensus        54 ~~~~~~p~~~i~~~KrllG~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~--~~~s~~~l~a~~L~~l~  122 (183)
T d1dkgd1          54 RQAVTNPQNTLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAADNGD-AWVEVK--G--QKMAPPQISAEVLKKMK  122 (183)
T ss_dssp             TTSTTCGGGEEECGGGTTTCBSCSHHHHHHTTTCSSEEEECSSSB-EEEEET--T--EEECHHHHHHHHHHHHH
T ss_pred             HhhhcCCccEEeeeHHHcCCCCCcHHHHhhhhcCCEEEEEcCCCc-EEEEEC--C--EEECHHHHHHHHHHHHH
Confidence            466789999999999999999999999999999999998876643 333322  2  23555444444444443

>d1bupa1 c.55.1.1 (A:4-188) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Heat shock protein 70kDa, ATPase fragment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=95.66  E-value=0.00065  Score=52.42  Aligned_cols=70  Identities=14%  Similarity=0.321  Sum_probs=51.8

Q ss_pred             chhhhHHHhhhhhcccccccCCChhhHHHHhhhcceeeeecCCCceEEEEEecCCeEEEecCCCccceeeEe
Q psy4650           2 SRLISQAKNTIIKNKRALNTELTETDIETIVRETKVDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKT   73 (381)
Q Consensus         2 ~~~~~~~~~t~~~~k~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~   73 (381)
                      .++..||+||++.+||++|+++.++.++...+..++.+....+  ........++..+.+.+++.....+..
T Consensus        54 ~~~~~~p~~~i~~~KrllG~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~s~~el~a~~l~~  123 (185)
T d1bupa1          54 NQVAMNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAG--RPKVQVEYKGETKSFYPEEVSSMVLTK  123 (185)
T ss_dssp             TTTTTCGGGEECCHHHHTTCCTTCHHHHHHHTTCSSEEEEETT--EEEEEEEETTEEEEECHHHHHHHHHHH
T ss_pred             HHhhcCcccchhHHHHHhCCCCccHHHHHHhhcCCceEEcCCC--CccEEEEEcCCceEEcHHHHHHHHHHH
Confidence            4567899999999999999999999999999999998887653  333334445566677765544444433

>d1jcea2 c.55.1.1 (A:141-336) Prokaryotic actin homolog MreB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Prokaryotic actin homolog MreB
species: Thermotoga maritima [TaxId: 2336]

Probab=95.28  E-value=0.0018  Score=50.24  Aligned_cols=96  Identities=10%  Similarity=-0.003  Sum_probs=72.1

Q ss_pred             cceeeEEEecccCCcccccccChHHHHHHHHHHhhhhhhhhHhhhccccceeeEeeccccCcceEEeecHHHHHHHHHHH
Q psy4650         275 LQSSNVFVESLYDGLDFHHNVSRARFESLIGGLLTSFVQPCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIGGL  354 (381)
Q Consensus       275 ~~~~~i~~~~l~~g~~~~~~itr~~fe~l~~~l~~~~~~~~~~~Ls~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~  354 (381)
                      .....+......++......++|..|++.+.+++.++.+.++.+|.........-......+++||+.++|.+++++++.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~IvLvGGsS~ip~v~~~l~~~  160 (196)
T d1jcea2          81 ELETTVSGIDLSTGLPRKLTLKGGEVREALRSVVVAIVESVRTTLEKTPPELVSDIIERGIFLTGGGSLLRGLDTLLQKE  160 (196)
T ss_dssp             HCEEEEEEEETTTTEEEEEEEEHHHHHHHTHHHHHHHHHHHHHHHHTSCHHHHHHHHHHCEEEESGGGCSBTHHHHHHHH
T ss_pred             ccceeeeeeeccCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccceEEeCchhcchhHHHHHHHH
Confidence            34456666677788888889999999999999999999999999977543321111123467889999999999999999


Q ss_pred             HHH----hHHHHHHHHHhCC
Q psy4650         355 LTS----FVQPIEDVLSRSN  370 (381)
Q Consensus       355 ~~~----~~~~~~~~l~~~~  370 (381)
                      |++    ..+|.+.+-+=|+
T Consensus       161 fg~~v~~~~~P~~aVA~GAa  180 (196)
T d1jcea2         161 TGISVIRSEEPLTAVAKGAG  180 (196)
T ss_dssp             HSSCEEECSSTTTHHHHHHH
T ss_pred             HCcCCccCCChHHHHHHHHH
Confidence            985    4456555544443

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=94.96  E-value=0.72  Score=37.38  Aligned_cols=101  Identities=7%  Similarity=-0.009  Sum_probs=71.9

Q ss_pred             ccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCC------e--EEEEeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEe
Q psy4650          79 KGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNK------T--CVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWH  150 (381)
Q Consensus        79 ~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~------~--~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd  150 (381)
                      ..-..+.|++++.. ++++-+..+.|..+++...      +  ....+.+..+....+++..+|.+.++.-..+.|..||
T Consensus       148 ~~~Ng~~~s~d~~~-l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~d  226 (295)
T d2ghsa1         148 SIPNSICFSPDGTT-GYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYD  226 (295)
T ss_dssp             SSEEEEEECTTSCE-EEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEEC
T ss_pred             CCcceeeecCCCce-EEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEec
Confidence            45578899988773 5667788889998887431      1  1122333445578889999999888777788899999


Q ss_pred             CCCCeeeEEEecCCcceEEEEEc-CCCCEEEE
Q psy4650         151 SGTHRLEISLTYGLERVWTISSL-KGSNNVAI  181 (381)
Q Consensus       151 ~~~~~~~~~~~~~~~~v~~v~~~-~~~~~l~~  181 (381)
                      . .|+.+..+......+++++|- ++.+.|..
T Consensus       227 p-~G~~~~~i~lP~~~~T~~~FGG~d~~~Lyv  257 (295)
T d2ghsa1         227 T-DGNHIARYEVPGKQTTCPAFIGPDASRLLV  257 (295)
T ss_dssp             T-TCCEEEEEECSCSBEEEEEEESTTSCEEEE
T ss_pred             C-CCcEeeEecCCCCceEEEEEeCCCCCEEEE
Confidence            5 677888887666778999986 45554443

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.77  E-value=0.37  Score=43.51  Aligned_cols=62  Identities=19%  Similarity=0.271  Sum_probs=43.3

Q ss_pred             CCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCceEEEecCCCEEEEEecCce
Q psy4650         144 GSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKVGREEPAVSMDVNGCKIIWARHSEV  216 (381)
Q Consensus       144 ~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~~~~~~~~~~d~~~~~~~~~~~~~~  216 (381)
                      |.+.=+|+.+|+.+........ +..-.....|.++..|+.||.++.          +|..+|+.+|+.....
T Consensus       466 G~l~AiD~~TG~i~W~~~~~~p-~~~g~lstagglVF~Gt~dg~l~A----------~Da~TGe~LW~~~~~~  527 (582)
T d1flga_         466 GSLRAMDPVSGKVVWEHKEHLP-LWAGVLATAGNLVFTGTGDGYFKA----------FDAKSGKELWKFQTGS  527 (582)
T ss_dssp             EEEEEECTTTCCEEEEEEESSC-CCSCCEEETTTEEEEECTTSEEEE----------EETTTCCEEEEEECSS
T ss_pred             CeEEEEcCCCCcEEeecCCCCC-CccceeEEcCCeEEEeCCCCeEEE----------EECCCCcEeEEEECCC
Confidence            5677788889988887764322 211112234556677888888887          9999999999987543

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=94.43  E-value=0.52  Score=42.43  Aligned_cols=60  Identities=12%  Similarity=0.152  Sum_probs=40.7

Q ss_pred             CEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCceEEEecCCCEEEEEecCc
Q psy4650         145 SVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKVGREEPAVSMDVNGCKIIWARHSE  215 (381)
Q Consensus       145 ~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~~~~~~~~~~d~~~~~~~~~~~~~  215 (381)
                      .+.=||+.+|+.+.......... .-...-.|.++..|+.||.++.          +|..+|+.+|+....
T Consensus       458 ~l~AiD~~tGk~~W~~~~~~p~~-gg~lstagglVF~G~~dg~l~A----------~Da~TGe~LW~~~~~  517 (573)
T d1kb0a2         458 RLLAWDPVAQKAAWSVEHVSPWN-GGTLTTAGNVVFQGTADGRLVA----------YHAATGEKLWEAPTG  517 (573)
T ss_dssp             EEEEEETTTTEEEEEEEESSSCC-CCEEEETTTEEEEECTTSEEEE----------EETTTCCEEEEEECS
T ss_pred             cEEEeCCCCCceEeeecCCCCCC-CceEEEcCCEEEEECCCCeEEE----------EECCCCcEeEEEECC
Confidence            46678888888887775432111 1111224556777888888887          999999999998654

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=93.82  E-value=0.92  Score=40.57  Aligned_cols=61  Identities=13%  Similarity=0.235  Sum_probs=41.9

Q ss_pred             CCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCceEEEecCCCEEEEEecCc
Q psy4650         144 GSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKVGREEPAVSMDVNGCKIIWARHSE  215 (381)
Q Consensus       144 ~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~~~~~~~~~~d~~~~~~~~~~~~~  215 (381)
                      |.+.-||+.+|+.+.......... +-...-.+.++..|+.||.++.          +|..+|+.+|.....
T Consensus       438 G~l~A~D~~tGk~~W~~~~~~~~~-gg~l~TagglVF~G~~dg~l~A----------~Da~tGe~LW~~~l~  498 (560)
T d1kv9a2         438 GALLAWDPVKQKAAWKVPYPTHWN-GGTLSTAGNLVFQGTAAGQMHA----------YSADKGEALWQFEAQ  498 (560)
T ss_dssp             EEEEEEETTTTEEEEEEEESSSCC-CCEEEETTTEEEEECTTSEEEE----------EETTTCCEEEEEECS
T ss_pred             cceEEEeCCCCeEeeeccCCCCCC-CceeEECCCEEEEECCCCcEEE----------EECCCCcEeEEEECC
Confidence            467788999999888776432211 1111223456667788888877          999999999997755

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=93.63  E-value=0.56  Score=42.15  Aligned_cols=61  Identities=13%  Similarity=0.078  Sum_probs=40.6

Q ss_pred             CCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCceEEEecCCCEEEEEecCc
Q psy4650         144 GSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKVGREEPAVSMDVNGCKIIWARHSE  215 (381)
Q Consensus       144 ~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~~~~~~~~~~d~~~~~~~~~~~~~  215 (381)
                      |.+.-+|+.+|+.+.............. .-.+.++..|+.||.++.          +|..+|+.+|+....
T Consensus       444 G~l~AiD~~TG~~~W~~~~~~~~~~g~l-~TagglVf~G~~dg~l~A----------~Da~tGe~lW~~~l~  504 (571)
T d2ad6a1         444 GQIRAFDLTTGKAKWTKWEKFAAWGGTL-YTKGGLVWYATLDGYLKA----------LDNKDGKELWNFKMP  504 (571)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCCCSBCE-EETTTEEEEECTTSEEEE----------EETTTCCEEEEEECS
T ss_pred             ccEEEeccCCCceeeEcCCCCCCCccee-EecCCEEEEECCCCeEEE----------EECCCCcEEEEEECC
Confidence            4577788888888877653221111111 113446667888888877          999999999998655

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=92.18  E-value=1.8  Score=38.72  Aligned_cols=75  Identities=7%  Similarity=-0.081  Sum_probs=48.0

Q ss_pred             CeEEEEECCCCeEEEEeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEecCCcc-eEEEEEcCCCC
Q psy4650         102 RLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLER-VWTISSLKGSN  177 (381)
Q Consensus       102 ~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~-v~~v~~~~~~~  177 (381)
                      |.+.-+|..+++.+....... +..+-...-.+.++..|+.|+.++-+|..+|+.+.++...... -.-+.|..+|+
T Consensus       444 G~l~AiD~~TG~~~W~~~~~~-~~~~g~l~TagglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~~a~P~ty~~dGk  519 (571)
T d2ad6a1         444 GQIRAFDLTTGKAKWTKWEKF-AAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGK  519 (571)
T ss_dssp             EEEEEECTTTCCEEEEEEESS-CCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTE
T ss_pred             ccEEEeccCCCceeeEcCCCC-CCCcceeEecCCEEEEECCCCeEEEEECCCCcEEEEEECCCCceecceEEEECCE
Confidence            568888888888776654221 1111112224667778999999999999999999988653221 11244444554

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=91.64  E-value=2.1  Score=38.07  Aligned_cols=61  Identities=8%  Similarity=0.126  Sum_probs=44.7

Q ss_pred             CeEEEEECCCCeEEEEeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEecC
Q psy4650         102 RLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYG  163 (381)
Q Consensus       102 ~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~  163 (381)
                      |.+.-||+.+++.+..+... .+...-...-.+.++..|+.||.++-+|..+|+.+.++...
T Consensus       438 G~l~A~D~~tGk~~W~~~~~-~~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~~~l~  498 (560)
T d1kv9a2         438 GALLAWDPVKQKAAWKVPYP-THWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQ  498 (560)
T ss_dssp             EEEEEEETTTTEEEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred             cceEEEeCCCCeEeeeccCC-CCCCCceeEECCCEEEEECCCCcEEEEECCCCcEeEEEECC
Confidence            57888999999887766422 22222222335667888999999999999999999988753

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=91.46  E-value=1.8  Score=38.88  Aligned_cols=61  Identities=15%  Similarity=0.247  Sum_probs=40.3

Q ss_pred             CCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCCCeEEEEecCCCceEEEecCCCEEEEEecCc
Q psy4650         144 GSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKVGREEPAVSMDVNGCKIIWARHSE  215 (381)
Q Consensus       144 ~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i~~~~~~~~~~~d~~~~~~~~~~~~~  215 (381)
                      |.+.=||+.+|+.+........ ..+-..+..|.++..|+.||.++.          +|..+|+.+|+....
T Consensus       453 G~l~A~D~~TG~~~W~~~~~~~-~~gg~lsTagglVF~G~~Dg~l~A----------~Da~TGe~LW~~~~~  513 (596)
T d1w6sa_         453 GQIKAYNAITGDYKWEKMERFA-VWGGTMATAGDLVFYGTLDGYLKA----------RDSDTGDLLWKFKIP  513 (596)
T ss_dssp             EEEEEECTTTCCEEEEEEESSC-CCSBCEEETTTEEEEECTTSEEEE----------EETTTCCEEEEEECS
T ss_pred             ceEEEEeCCCCceecccCCCCC-CccceeEecCCEEEEECCCCeEEE----------EECCCCcEeeEEECC
Confidence            4577788888887776543211 111111223556667888888877          999999999998654

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=91.39  E-value=2.9  Score=33.64  Aligned_cols=131  Identities=8%  Similarity=0.067  Sum_probs=79.6

Q ss_pred             CeEEEecCCCccceeeEeeccccccEEEEEeeeCCCc-cEEEEE---cCCCeEEEEECCCCe---E-----EEEec----
Q psy4650          56 SRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDK-PYLISG---ADDRLVKIWDYQNKT---C-----VQTLE----  119 (381)
Q Consensus        56 ~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~-~~l~s~---~~d~~v~vwd~~~~~---~-----~~~~~----  119 (381)
                      |.+.+|..+   ...-+.+.||.+....+.+.-+... .+++-+   ...+.+++.++....   +     ...+.    
T Consensus       176 G~mQLYS~e---r~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppe  252 (327)
T d1utca2         176 GAMQLYSVD---RKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPE  252 (327)
T ss_dssp             EEEEEEETT---TTEEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTT
T ss_pred             EEEEEEEec---cCcCccccceeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCcc
Confidence            577888875   3455667888776666544311111 133322   233678888875421   1     11111    


Q ss_pred             cCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEecCCcceEEEEEcCCCCEEEEEeCCCeEE
Q psy4650         120 GHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVL  189 (381)
Q Consensus       120 ~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~  189 (381)
                      ...+--.++..++.-..+..-..-|.+.++|+.+|.++..-+-..+.|...+-.....-+++-..+|.+.
T Consensus       253 a~~DFPvamqvs~kygiiyviTK~G~i~lyDleTgt~i~~nRIs~~~iF~~a~~~~~~Gi~~VNr~GqVl  322 (327)
T d1utca2         253 AQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVL  322 (327)
T ss_dssp             CTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTSEEE
T ss_pred             ccCCcEEEEEeeccCCEEEEEecCcEEEEEEcccccEEEEeecCCCceEEeccCCCCceEEEECCCCeEE
Confidence            1123456788888888888888999999999999999988776666666555544443444444555553

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=91.04  E-value=2.2  Score=38.09  Aligned_cols=75  Identities=15%  Similarity=0.166  Sum_probs=50.0

Q ss_pred             CeEEEEECCCCeEEEEeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEecCCcce-EEEEEcCCCC
Q psy4650         102 RLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERV-WTISSLKGSN  177 (381)
Q Consensus       102 ~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v-~~v~~~~~~~  177 (381)
                      |.+.-||..+++.+..++... +...=..+-.+.++..|+.|+.++.+|..+|+.+.++....... .=+.|..+|+
T Consensus       457 G~l~AiD~~tGk~~W~~~~~~-p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~Gk  532 (573)
T d1kb0a2         457 GRLLAWDPVAQKAAWSVEHVS-PWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGR  532 (573)
T ss_dssp             EEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTE
T ss_pred             ccEEEeCCCCCceEeeecCCC-CCCCceEEEcCCEEEEECCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCE
Confidence            467888999998887775432 21111223367788889999999999999999999887543211 1134445565

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=90.51  E-value=4.5  Score=34.32  Aligned_cols=97  Identities=11%  Similarity=0.010  Sum_probs=61.6

Q ss_pred             CCceEEEEEecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCC------------------eEE
Q psy4650          44 DMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDR------------------LVK  105 (381)
Q Consensus        44 ~~~~~~~s~~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~------------------~v~  105 (381)
                      |+.-.++....++.|-+.|+..-+...+..+. ....+..++..+++...+++.++.+.                  .+.
T Consensus        98 DGrylFVNDkan~RVAvIdl~~fkt~kIi~iP-n~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t  176 (459)
T d1fwxa2          98 DGRFLFMNDKANTRVARVRCDVMKCDAILEIP-NAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT  176 (459)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEEECS-SCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEEE
T ss_pred             ceeEEEEEcCCCceEEEEECcceeeeEEEecC-CCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEEE
Confidence            43434456667888888888654433333432 34456777766655555777766633                  356


Q ss_pred             EEECCCCeEEEEeccCCCCEEEEEEecCCCEEEEEeC
Q psy4650         106 IWDYQNKTCVQTLEGHGQNISAVCFHPELPIVITGSE  142 (381)
Q Consensus       106 vwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~  142 (381)
                      +.|..+.+....+... +....++++|+|+++++.+.
T Consensus       177 ~ID~~tm~V~~QV~V~-g~ld~~~~s~dGK~af~Tsy  212 (459)
T d1fwxa2         177 AVDADKWEVAWQVLVS-GNLDNCDADYEGKWAFSTSY  212 (459)
T ss_dssp             EEETTTTEEEEEEEES-SCCCCEEECSSSSEEEEEES
T ss_pred             EEecCCceEEEEeeeC-CChhccccCCCCCEEEEEec
Confidence            7888888776666532 34567899999998777653

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=88.38  E-value=5.7  Score=32.63  Aligned_cols=98  Identities=8%  Similarity=0.144  Sum_probs=59.1

Q ss_pred             EEEecCCCccceeeEee-ccccccEEEEEeeeCCCccEEEEEcCC-CeEEEEECCCCeEEEEeccC-CCCEEEEEEecCC
Q psy4650          58 VKAFNPIQVATLILKTL-YGHEKGVNCVDYYHGGDKPYLISGADD-RLVKIWDYQNKTCVQTLEGH-GQNISAVCFHPEL  134 (381)
Q Consensus        58 v~i~~~~~~~~~~~~~l-~~h~~~v~~~~~~~~~~~~~l~s~~~d-~~v~vwd~~~~~~~~~~~~~-~~~v~~~~~~p~~  134 (381)
                      +.+||+....-.....+ ..|.....+..+.+++.  .++.|+.+ .++.+||..+..-...-... ...-.+.+..++|
T Consensus        54 ~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~--i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG  131 (387)
T d1k3ia3          54 TSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQ--IVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDG  131 (387)
T ss_dssp             EEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSC--EEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTS
T ss_pred             EEEEECCCCcEeecCCCCCCcccceeEEEEecCCc--EEEeecCCCcceeEecCccCcccccccccccccccceeeecCC
Confidence            67899975433222222 23333444556767665  67777654 68999999877543211111 1122456677889


Q ss_pred             CEEEEEeCC------CCEEEEeCCCCeee
Q psy4650         135 PIVITGSED------GSVRVWHSGTHRLE  157 (381)
Q Consensus       135 ~~l~s~~~d------~~i~vwd~~~~~~~  157 (381)
                      ..++.|+.+      ..+.+||..+.+..
T Consensus       132 ~v~v~GG~~~~~~~~~~v~~yd~~~~~W~  160 (387)
T d1k3ia3         132 RVFTIGGSWSGGVFEKNGEVYSPSSKTWT  160 (387)
T ss_dssp             CEEEECCCCCSSSCCCCEEEEETTTTEEE
T ss_pred             ceeeeccccccccccceeeeecCCCCcee
Confidence            988887652      46899999887643

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=86.74  E-value=4.6  Score=34.27  Aligned_cols=102  Identities=10%  Similarity=0.076  Sum_probs=61.0

Q ss_pred             ccccEEEEEeeeCCCccEEE-EEcC----CCeEEEEECCCCeEEE-EeccCCCCEEEEEEecCCCEEEEEeCC-------
Q psy4650          77 HEKGVNCVDYYHGGDKPYLI-SGAD----DRLVKIWDYQNKTCVQ-TLEGHGQNISAVCFHPELPIVITGSED-------  143 (381)
Q Consensus        77 h~~~v~~~~~~~~~~~~~l~-s~~~----d~~v~vwd~~~~~~~~-~~~~~~~~v~~~~~~p~~~~l~s~~~d-------  143 (381)
                      +.-.+....++|++.  +++ +-+.    -..++++|+.+++.+. .+..  .....++|.+++..+.....+       
T Consensus       123 ~~~~~~~~~~Spd~~--~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~--~~~~~~~W~~D~~~~~Y~~~~~~~~~~~  198 (430)
T d1qfma1         123 GTVALRGYAFSEDGE--YFAYGLSASGSDWVTIKFMKVDGAKELPDVLER--VKFSCMAWTHDGKGMFYNAYPQQDGKSD  198 (430)
T ss_dssp             SCEEEEEEEECTTSS--EEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE--ECSCCEEECTTSSEEEEEECCCCSSCCS
T ss_pred             ccceecceEecCCCC--EEEEEeccccCchheeEEeccCcceeccccccc--ccccceEEcCCCCEEEEEEeccccCccc
Confidence            333445667788776  444 3322    3478899999998654 2321  112568899999977654332       


Q ss_pred             ---------CCEEEEeCCCCeee--EEEecC--CcceEEEEEcCCCCEEEEE
Q psy4650         144 ---------GSVRVWHSGTHRLE--ISLTYG--LERVWTISSLKGSNNVAIG  182 (381)
Q Consensus       144 ---------~~i~vwd~~~~~~~--~~~~~~--~~~v~~v~~~~~~~~l~~~  182 (381)
                               ..+..|.+.+....  ..+...  ...+..+..+++++++...
T Consensus       199 ~~~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~  250 (430)
T d1qfma1         199 GTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLS  250 (430)
T ss_dssp             SSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEE
T ss_pred             ccccccCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEE
Confidence                     25777778765432  222222  2345667778888876644

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=86.44  E-value=0.76  Score=41.38  Aligned_cols=76  Identities=16%  Similarity=0.099  Sum_probs=52.6

Q ss_pred             CCeEEEEECCCCeEEEEeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEecCCcce-EEEEEcCCCC
Q psy4650         101 DRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERV-WTISSLKGSN  177 (381)
Q Consensus       101 d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v-~~v~~~~~~~  177 (381)
                      .|.+.-+|+.+++.+.....+. ++..-..+..+.++..|+.|+.++-+|..+|+.+.+++...... .-+.|..+|+
T Consensus       465 ~G~l~AiD~~TG~i~W~~~~~~-p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~  541 (582)
T d1flga_         465 VGSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGE  541 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTE
T ss_pred             CCeEEEEcCCCCcEEeecCCCC-CCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCE
Confidence            3678889999998887776432 22222234467788889999999999999999999987533211 1145556664

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=83.33  E-value=1.4  Score=39.75  Aligned_cols=61  Identities=13%  Similarity=0.051  Sum_probs=44.1

Q ss_pred             CeEEEEECCCCeEEEEeccCCCCEEEEEEecCCCEEEEEeCCCCEEEEeCCCCeeeEEEecC
Q psy4650         102 RLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYG  163 (381)
Q Consensus       102 ~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~  163 (381)
                      |.+.-||..+++.+..... ..+...-..+..+.++..|+.||.++-+|..+|+.+.++...
T Consensus       453 G~l~A~D~~TG~~~W~~~~-~~~~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe~LW~~~~~  513 (596)
T d1w6sa_         453 GQIKAYNAITGDYKWEKME-RFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIP  513 (596)
T ss_dssp             EEEEEECTTTCCEEEEEEE-SSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred             ceEEEEeCCCCceecccCC-CCCCccceeEecCCEEEEECCCCeEEEEECCCCcEeeEEECC
Confidence            5788899999987765532 222222222335677778999999999999999999998753

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=81.98  E-value=11  Score=30.66  Aligned_cols=100  Identities=12%  Similarity=0.107  Sum_probs=55.8

Q ss_pred             EEEEECCCCeEE--EEe-ccCCCCEEEEEEecCCCEEEEEeCC-CCEEEEeCCCCeeeEEEecCC-cceEEEEEcCCCCE
Q psy4650         104 VKIWDYQNKTCV--QTL-EGHGQNISAVCFHPELPIVITGSED-GSVRVWHSGTHRLEISLTYGL-ERVWTISSLKGSNN  178 (381)
Q Consensus       104 v~vwd~~~~~~~--~~~-~~~~~~v~~~~~~p~~~~l~s~~~d-~~i~vwd~~~~~~~~~~~~~~-~~v~~v~~~~~~~~  178 (381)
                      +.+||..++.-.  ... ..|.......++.+++.+++.|+.+ ..+.+||..+......-.... ..-.+++..++|++
T Consensus        54 ~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v  133 (387)
T d1k3ia3          54 TSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRV  133 (387)
T ss_dssp             EEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCE
T ss_pred             EEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeEecCccCcccccccccccccccceeeecCCce
Confidence            668999876421  111 2232333466788999988888664 689999998776533211111 11124555667777


Q ss_pred             EEEEeCCCeEEEEecCCCceEEEecCCCE
Q psy4650         179 VAIGYDEGSVLLKVGREEPAVSMDVNGCK  207 (381)
Q Consensus       179 l~~~~~dg~v~i~~~~~~~~~~~d~~~~~  207 (381)
                      ++.|+.+..-    .....+..||+.+..
T Consensus       134 ~v~GG~~~~~----~~~~~v~~yd~~~~~  158 (387)
T d1k3ia3         134 FTIGGSWSGG----VFEKNGEVYSPSSKT  158 (387)
T ss_dssp             EEECCCCCSS----SCCCCEEEEETTTTE
T ss_pred             eeeccccccc----cccceeeeecCCCCc
Confidence            7766542210    001233448887665

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=80.48  E-value=14  Score=30.56  Aligned_cols=123  Identities=11%  Similarity=0.002  Sum_probs=66.5

Q ss_pred             ecCCeEEEecCCCccceeeEeeccccccEEEEEeeeCCCccEEEEEcCCCeEEEEECCCCeEEEEecc-----CCCCEEE
Q psy4650          53 QESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEG-----HGQNISA  127 (381)
Q Consensus        53 ~~d~~v~i~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~-----~~~~v~~  127 (381)
                      ..++.+..++......  ......-..++.++.++|  .  .++....++.+-++++..+.......+     -.+.+.+
T Consensus       102 ~~~~~l~~~~~~~l~~--~~~~~~~~~~~~~~~~~p--~--~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~  175 (381)
T d1xipa_         102 STRNALYSLDLEELSE--FRTVTSFEKPVFQLKNVN--N--TLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQLA  175 (381)
T ss_dssp             EESSEEEEEESSSTTC--EEEEEECSSCEEEEEECS--S--EEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEEE
T ss_pred             EeCCCEEEEEeecccc--ccccccccccccceecCC--c--eeEEEecCCCEEEEEeccCccccccCCcceEEecCCceE
Confidence            3445677777654222  122223345678888876  3  466677789999999988754332211     2356788


Q ss_pred             EEEecCCCEEEEEeCCCCEEEE-eCCCCeeeEEEecCCcceEEEEEcCCCCEEEEE
Q psy4650         128 VCFHPELPIVITGSEDGSVRVW-HSGTHRLEISLTYGLERVWTISSLKGSNNVAIG  182 (381)
Q Consensus       128 ~~~~p~~~~l~s~~~d~~i~vw-d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~  182 (381)
                      ++|++.|..++++..++ ..+- +......+.........|.++.|..+..++++-
T Consensus       176 v~ws~kgkq~v~~~g~~-~q~k~~i~~~~~~~~p~~~~~~v~sI~WL~~~~F~vvy  230 (381)
T d1xipa_         176 VLLKDRSFQSFAWRNGE-MEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF  230 (381)
T ss_dssp             EEETTSCEEEEEEETTE-EEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred             EEEeCCcEEEEEeCCCc-eeeccCCCCccccCCCcCCCcceeEEEEecCceEEEEE
Confidence            88888877776664322 1111 111000000000123467888888766655543