Psyllid ID: psy4697

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380---
Protein Sequence
DINEDDFLQPITLVVRAIQYDNQDRYALATLIVSKAGTSLRELQFSKNEYSVSALENLPVNYVLLTVTTNKPRDLRVKYWLSNDYGERFSISRQGDISLMQCLDYETEDSYRFTVYATDTLMTTSATVNISVVNVNDWDPRFRYPQYELFLPHIPLADLTPGSVIGKVEAADGDKGDRVTLSLRGPYEKMFSINDSGHISIVDLSALNTSTIQLVVVATDTGNPPRQASVPAIMHFPEAIVQQASSKLNSGTSSTVLIILGVVLIVLGFVIILLILYIHKNKHTKNNGPPGSSHSKNDSFLSNVILPEKHVNVVAIPKIQENPVFNGSQEELQTQRGGTNSSIYTATVKKTLSGKPELDPEVGVTPLVTDMKTSDCTNLTVYF
Secondary Structure (PSIPRED)
ccccccccccEEEEEEEEEccccccEEEEEEEEEEEEEccccccccccEEEEEEEcccccccEEEEEEcccccccEEEEEEEccccccEEEccccEEEEccccccccccEEEEEEEEEEcccccEEEEEEEEEEccccccEEEEccccEEEccccccccccccEEEEEEEEcccccccEEEEEEEcccccEEEcccccEEEEEccccccccEEEEEEEEEccccccccEEEEEEEEccccccccccccccccEEEEEEEHHHHHHHHHHHHHHHEEEEEEcccccccccccccccccccccccccccccEEEEEEccccccccccccEEEEEEEccccccccEEEEEEEEEccccccccccEEEEEEEEEcccccccccEEcc
Secondary Structure Prediction (SSPRO)
cccHHHHHccEEEEEEEEcccccccccEEEEEEEEEEcccccccEcccEEEEEEccccccccEEEEEEEEccccccEEEEEccccccEEEEccccEEEEEccccHHHHcccEEEEEEEcccccEEEEEEEEEEEccccccEEEcccEEEEccccccccccccEEEEEEEEEcccccccEEEEEEccccccEEEcccccEEEEEccccccccEEEEEEEEccccccccEEEEEEEEEcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccEEEEEEEcccccccccEEEEEEEcccccccccEEEEEEEEEEccccccccEEEEEEEEcccEcccccccEEEc
Coil and Loop (DISEMBL)
dineddflqpITLVVRAIQYDNQDRYALATLIVSKAGTSLRELQFSKNEYSvsalenlpvNYVLLTVttnkprdlRVKYWLSndygerfsisrqgdislmqcldyetedsyrFTVYATDTLMTTSATVNISvvnvndwdprfrypqyelflphipladltpgsvigkveaadgdkgdrvtlslrgpyekmfsindsghisivdlsalntsTIQLVVVATdtgnpprqasvpaimhFPEAIVQQASsklnsgtssTVLIILGVVLIVLGFVIILLILYIHknkhtknngppgsshskndsflsnvilpekhvnvvaipkiqenpvfngsqeelqtqrggtnssiYTATVKKtlsgkpeldpevgvtplvtdmktsdctnltvyf
Flexible Loop (DISEMBL)
dineddflqpITLVVRAIQYDNQDRYALATLIVSKAGTSLRELQFSKNEYSvsalenlpvNYVLLTvttnkprdlrVKYWLSNDygerfsisrqgdiSLMQCLDYETEDSYRFTVYATDTLMTTSATVNISVVNVNDWDPRFRYPQYELFLPHIPLADLTPGSVIGKveaadgdkgdrvtlslrgpyEKMFSINDSGHISIVDLSALNTSTIQLVVVATDTGNPPRQASVPAIMHFPEAIVQQASSKLNSGTSSTVLIILGVVLIVLGFVIILLILYIHKNKHTKNNGPPGSSHSKNDSFLSNVILPEKHVNVVAIPKIQENPVFNGSQEELqtqrggtnssIYTATVkktlsgkpeldpevgvtplvtdmktsdctnltvyf
Low Complexity Region (SEG)
DINEDDFLQPITLVVRAIQYDNQDRYALATLIVSKAGTSLRELQFSKNEYSVSALENLPVNYVLLTVTTNKPRDLRVKYWLSNDYGERFSISRQGDISLMQCLDYETEDSYRFTVYATDTLMTTSATVNISVVNVNDWDPRFRYPQYELFLPHIPLADLTPGSVIGKVEAADGDKGDRVTLSLRGPYEKMFSINDSGHISIVDLSALNTSTIQLVVVATDTGNPPRQASVPAIMHFPEAIVQQASSKLNSGTSSTvliilgvvlivlgfviillilyiHKNKHTKNNGPPGSSHSKNDSFLSNVILPEKHVNVVAIPKIQENPVFNGSQEELQTQRGGTNSSIYTATVKKTLSGKPELDPEVGVTPLVTDMKTSDCTNLTVYF
Disordered region (IsUnstruct)
******FLQPITLVVRAIQYDNQDRYALATLIVSKAGTSLRELQFSKNEYSVSALENLPVNYVLLTVTTNKPRDLRVKYWLSNDYGERFSISRQGDISLMQCLDYETEDSYRFTVYATDTLMTTSATVNISVVNVNDWDPRFRYPQYELFLPHIPLADLTPGSVIGKVEAADGDKGDRVTLSLRGPYEKMFSINDSGHISIVDLSALNTSTIQLVVVATDT*********PAIMHFPEAIV***********SSTVLIILGVVLIVLGFVIILLILYIHK********************LSNVILPEKHVNVVAIPKI****************************************************************
Disordered Region (DISOPRED)
DINEDDFLQPITLVVRAIQYDNQDRYALATLIVSKAGTSLRELQFSKNEYSVSALENLPVNYVLLTVTTNKPRDLRVKYWLSNDYGE*FSISRQGDISLMQCLDYETEDSYRFTVYATDTLMTTSATVNISVVNVNDWDPRFRYPQYELFLPHIPLADLTPGSVIGKVEAADGDKGDRVTLSLRGPYEKMFSINDSGHISIVDLSALNTSTIQLVVVATDTGNPPRQASVPAIMHFPEAIVQQASSKLNSGTSSTVLIILGVVLIVLGFVIILLILYIHKNK*************KNDSFLSNVILPEKHVNVVAIPKIQENPVFNGSQEEL********SSIYTATVKKTLSG*PELDPEVGVTPLVTDMKTSDC*NLTVYF
Disordered Region (DISEMBL)
DINEDDFLQPITLVVRAIQYDNQDRYALATLIVSKAGTSLRELQFSKNEYSVSALENLPVNYVLLTVTTNKPRDLRVKYWLSNDYGERFSISRQGDISLMQCLDYETEDSYRFTVYATDTLMTTSATVNISVVNVNDWDPRFRYPQYELFLPHIPLADLTPGSVIGKVEAADGDKGDRVTLSLRGPYEKMFSINDSGHISIVDLSALNTSTIQLVVVATDTGNPPRQASVPAIMHFPEAIVQQASSKLNSGTSSTVLIILGVVLIVLGFVIILLILYIHKNKHTK**********KNDSFLSNVILPEKHVNVVAIPKIQENPVFNGSQEELQTQRGGTNSSIYTATVKKTLSGKPELDPEVGVTPLVTDMKTSDCTNLTVYF
Disordered Region (DISPRO)
*INEDDFLQPITLVVRAIQYDNQDRYALATLIVSKAGTSLRELQFSKNEYSVSALENLPVNYVLLTVTTNKPRDLRVKYWLSNDYGERFSISRQGDISLMQCLDYETEDSYRFTVYATDTLMTTSATVNISVVNVNDWDPRFRYPQYELFLPHIPLADLTPGSVIGKVEAADGDKGDRVTLSLRGPYEKMFSINDSGHISIVDLSALNTSTIQLVVVATDTGNPPRQASVPAIMHFPEAIVQQASSKLNSGTSSTVLIILGVVLIVLGFVIILLILYIHKNKHTKNNGPPGSSHSKNDSFLSNVILPEKHVNVVAIPKIQENPVFNGSQEELQTQRGGTNSSIYTATVKKTLSGKPELDPEVGVTPLVTDMKTSDCTNLTVYF
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
DINEDDFLQPITLVVRAIQYDNQDRYALATLIVSKAGTSLRELQFSKNEYSVSALENLPVNYVLLTVTTNKPRDLRVKYWLSNDYGERFSISRQGDISLMQCLDYETEDSYRFTVYATDTLMTTSATVNISVVNVNDWDPRFRYPQYELFLPHIPLADLTPGSVIGKVEAADGDKGDRVTLSLRGPYEKMFSINDSGHISIVDLSALNTSTIQLVVVATDTGNPPRQASVPAIMHFPEAIVQQASSKLNSGTSSTVLIILGVVLIVLGFVIILLILYIHKNKHTKNNGPPGSSHSKNDSFLSNVILPEKHVNVVAIPKIQENPVFNGSQEELQTQRGGTNSSIYTATVKKTLSGKPELDPEVGVTPLVTDMKTSDCTNLTVYF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	383	2.2.26 [Sep-21-2011]
Q9VGG5	1975	Cadherin-87A OS=Drosophil	no	N/A	0.454	0.088	0.335	6e-12
Q6V0I7	4981	Protocadherin Fat 4 OS=Ho	yes	N/A	0.590	0.045	0.292	6e-12
Q5DRA3	938	Protocadherin gamma-C4 OS	no	N/A	0.543	0.221	0.282	2e-11
Q9Y5F7	938	Protocadherin gamma-C4 OS	no	N/A	0.543	0.221	0.282	2e-11
Q24292	3503	Protein dachsous OS=Droso	no	N/A	0.488	0.053	0.308	3e-11
Q2PZL6	4981	Protocadherin Fat 4 OS=Mu	yes	N/A	0.592	0.045	0.282	4e-11
Q9HCU4	2923	Cadherin EGF LAG seven-pa	no	N/A	0.514	0.067	0.319	2e-10
O60245	1069	Protocadherin-7 OS=Homo s	no	N/A	0.475	0.170	0.305	3e-10
Q5DRB5	931	Protocadherin gamma-A5 OS	no	N/A	0.454	0.186	0.314	5e-10
Q9Y5G8	931	Protocadherin gamma-A5 OS	no	N/A	0.454	0.186	0.314	6e-10

>sp|Q9VGG5|CAD87_DROME Cadherin-87A OS=Drosophila melanogaster GN=Cad87A PE=1 SV=4

 Score = 72.4 bits (176), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 65/194 (33%), Positives = 99/194 (51%), Gaps = 20/194 (10%)

Query: 55   LENLPVNYVLLTVTTNKPRDLRVKYWLS-NDYGERFSISR-QGDISLMQCLDYETEDSYR 112
            +E  PV  VL T+  N       ++ +S NDY   F+I++  G I  +  LDYE     +
Sbjct: 1014 VEEQPVGTVLTTLQANDEDSSIGEFNISDNDY---FAINQTSGMIYTIARLDYEVVKEVK 1070

Query: 113  FTVYATDT---LMTTSATVNISVVNVNDWDPRFRYPQYELFLPHIPLADLTP-GSVIGKV 168
            F V  +DT    +T +A V + ++N+ND DP+F    Y     +  + + +P G+V GKV
Sbjct: 1071 FQVTVSDTGVPALTATADVVVDIINLNDNDPKFSQSDY-----YFNVTENSPRGTVAGKV 1125

Query: 169  EAADGDKG--DRVTLSLRGPYEKMFSIND-SGHISIVDLSALNTSTIQ---LVVVATDTG 222
            EA DGD G    +T +L G   K FSI+  +G++ + + S L+   I+   L VVA D  
Sbjct: 1126 EAHDGDVGVFGEITYTLIGENNKYFSIDAYTGNVMVANSSILDREQIKELTLSVVAQDKA 1185

Query: 223  NPPRQASVPAIMHF 236
                Q S  A +H 
Sbjct: 1186 PAAVQKSATATIHI 1199

Cadherins are calcium dependent cell adhesion proteins. They preferentially interact with themselves in a homophilic manner in connecting cells.
Drosophila melanogaster (taxid: 7227)

>sp|Q6V0I7|FAT4_HUMAN Protocadherin Fat 4 OS=Homo sapiens GN=FAT4 PE=1 SV=2

 Score = 72.4 bits (176), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 79/270 (29%), Positives = 121/270 (44%), Gaps = 44/270 (16%)

Query: 2    INEDD-----FLQPITLV---VRAIQYDNQDRYALATLIVSKAGTSLRELQ--------- 44
            +NEDD     FL PIT V    R + Y+ Q  Y L T+     G     ++         
Sbjct: 1880 VNEDDEDGIFFLNPITGVFNLTRLLDYEVQQYYIL-TVRAEDGGGQFTTIRVYFNILDVN 1938

Query: 45   -----FSKNEYSVSALENLPVNYVLLTVTTNKPRD---LRVKYWL-SNDYGERFSISRQG 95
                 FS N YS S +ENLPV   +L        D    ++ Y + S D   +F++ + G
Sbjct: 1939 DNPPIFSLNSYSTSLMENLPVGSTVLVFNVTDADDGINSQLTYSIASGDSLGQFTVDKNG 1998

Query: 96   DISLMQCLDYETEDSYRFTVYATD------TLMTTSATVNISVVNVNDWDPRFRYPQYEL 149
             + +++ LD E++  Y   V   D      +  T++A V+I +++VND  P F  P+   
Sbjct: 1999 VLKVLKALDRESQSFYNLVVQVHDLPQIPASRFTSTAQVSIILLDVNDNPPTFLSPK--- 2055

Query: 150  FLPHIPLADLTP-GSVIGKVEAADGDKG--DRVTLSLRGPYEKMFSIND-SGHISIV-DL 204
             L +IP  + TP  +V+ K +A D D G    +  +L  P    FSI    G + +  +L
Sbjct: 2056 -LTYIP--ENTPIDTVVFKAQATDPDSGPNSYIEYTLLNPLGNKFSIGTIDGEVRLTGEL 2112

Query: 205  SALNTSTIQLVVVATDTGNPPRQASVPAIM 234
                 S   L VVATD G P   +S   ++
Sbjct: 2113 DREEVSNYTLTVVATDKGQPSLSSSTEVVV 2142

May function in the regulation of planar cell polarity (By similarity). Cadherins are cell-cell interaction molecules.

Homo sapiens (taxid: 9606)

>sp|Q5DRA3|PCDGL_PANTR Protocadherin gamma-C4 OS=Pan troglodytes GN=PCDHGC4 PE=3 SV=1

 Score = 70.5 bits (171), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 65/230 (28%), Positives = 104/230 (45%), Gaps = 22/230 (9%)

Query: 13  LVVRAIQYDNQDRYALATLIVSKAGTSLRELQFSKNEYSVSALENLPVNYVLLTVTTNKP 72
           LV+ A+   N  R   A L VS    +     F ++ Y +S LE+ P   VL+ +  + P
Sbjct: 210 LVLTAVDGGNPPRSGTAELRVSVLDVNDNAPAFQQSSYRISVLESAPAGMVLIQLNASDP 269

Query: 73  RDL----RVKYWLSNDYGER----FSI-SRQGDISLMQCLDYETEDSYRFTVYATD---T 120
            DL     V ++ S    +R    FS+    G ++L+  LD+E+E+ Y F V A D    
Sbjct: 270 -DLGPSGNVTFYFSGHTPDRVRNLFSLHPTTGKLTLLGPLDFESENYYEFDVRARDGGSP 328

Query: 121 LMTTSATVNISVVNVNDWDPRFRYPQYELFLPHIPLADLTPGSVIGKVEAADGDKGDRVT 180
            M    ++ + +++VND  P          LP        PG+V+  +   D D G    
Sbjct: 329 AMEQHCSLRVDLLDVNDNAPYITVTSELGTLPE----SAEPGTVVALISVQDPDSGSNGD 384

Query: 181 LSLRGPYEKMFSINDS--GHISIVDLSALN---TSTIQLVVVATDTGNPP 225
           +SLR P    F++  +     S+V    L+    S+  ++V A+D GNPP
Sbjct: 385 VSLRIPDHLPFALKSAFRNQFSLVTAGPLDREAKSSYDIMVTASDAGNPP 434

Potential calcium-dependent cell-adhesion protein. May be involved in the establishment and maintenance of specific neuronal connections in the brain.

Pan troglodytes (taxid: 9598)

>sp|Q9Y5F7|PCDGL_HUMAN Protocadherin gamma-C4 OS=Homo sapiens GN=PCDHGC4 PE=2 SV=1

 Score = 70.5 bits (171), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 65/230 (28%), Positives = 104/230 (45%), Gaps = 22/230 (9%)

Query: 13  LVVRAIQYDNQDRYALATLIVSKAGTSLRELQFSKNEYSVSALENLPVNYVLLTVTTNKP 72
           LV+ A+   N  R   A L VS    +     F ++ Y +S LE+ P   VL+ +  + P
Sbjct: 210 LVLTAVDGGNPPRSGTAELRVSVLDVNDNAPAFQQSSYRISVLESAPAGMVLIQLNASDP 269

Query: 73  RDL----RVKYWLSNDYGER----FSI-SRQGDISLMQCLDYETEDSYRFTVYATD---T 120
            DL     V ++ S    +R    FS+    G ++L+  LD+E+E+ Y F V A D    
Sbjct: 270 -DLGPSGNVTFYFSGHTPDRVRNLFSLHPTTGKLTLLGPLDFESENYYEFDVRARDGGSP 328

Query: 121 LMTTSATVNISVVNVNDWDPRFRYPQYELFLPHIPLADLTPGSVIGKVEAADGDKGDRVT 180
            M    ++ + +++VND  P          LP        PG+V+  +   D D G    
Sbjct: 329 AMEQHCSLRVDLLDVNDNAPYITVTSELGTLPE----SAEPGTVVALISVQDPDSGSNGD 384

Query: 181 LSLRGPYEKMFSINDS--GHISIVDLSALN---TSTIQLVVVATDTGNPP 225
           +SLR P    F++  +     S+V    L+    S+  ++V A+D GNPP
Sbjct: 385 VSLRIPDHLPFALKSAFRNQFSLVTAGPLDREAKSSYDIMVTASDAGNPP 434

Potential calcium-dependent cell-adhesion protein. May be involved in the establishment and maintenance of specific neuronal connections in the brain.

Homo sapiens (taxid: 9606)

>sp|Q24292|DS_DROME Protein dachsous OS=Drosophila melanogaster GN=ds PE=1 SV=3

 Score = 70.1 bits (170), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 66/214 (30%), Positives = 96/214 (44%), Gaps = 27/214 (12%)

Query: 45   FSKNEYSVSALENLPVNYVLLTVTT---NKPRDLRVKYWL-------------SNDYGER 88
            F K+EYSV+  E+  +N  ++ V     +   + R+ Y +             S+D  + 
Sbjct: 983  FEKDEYSVNVSESRSINAQIIQVNASDLDTGNNARITYRIVDAGVDNVTNSISSSDVSQH 1042

Query: 89   FSI-SRQGDISLMQCLDYETEDSYRFTVYATDT---LMTTSATVNISVVNVNDWDPRFRY 144
            F I    G I L   LD ET D Y+ TV ATD           V + V++ ND DP+F+ 
Sbjct: 1043 FGIFPNSGWIYLRAPLDRETRDRYQLTVLATDNGTPAAHAKTRVIVRVLDANDNDPKFQK 1102

Query: 145  PQYELFLPHIPLADLTPGSVIGKVEAADGDKGDRVTLSLRG-PYEKMFSIND-SGHISIV 202
             +YE  +      +L  GSV+G V A+D D G+   +     P    F ++  +G IS  
Sbjct: 1103 SKYEFRIEE----NLRRGSVVGVVTASDLDLGENAAIRYSLLPINSSFQVHPVTGEISTR 1158

Query: 203  D-LSALNTSTIQLVVVATDTGNPPRQASVPAIMH 235
            + L         LVV A D G P R A VP  +H
Sbjct: 1159 EPLDRELRELYDLVVEARDQGTPVRSARVPVRIH 1192

Involved in morphogenesis. May also be involved in cell adhesion.

Drosophila melanogaster (taxid: 7227)

>sp|Q2PZL6|FAT4_MOUSE Protocadherin Fat 4 OS=Mus musculus GN=Fat4 PE=1 SV=2

 Score = 69.3 bits (168), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 76/269 (28%), Positives = 120/269 (44%), Gaps = 42/269 (15%)

Query: 2    INEDD-----FLQPITLV---VRAIQYDNQDRYALATLIVSKAG--TSLREL-------- 43
            + EDD     FL  +T V    RA+ Y+ Q  Y L        G  T++R          
Sbjct: 1880 VEEDDGDGVFFLNLVTGVFNLTRALDYETQQYYILTVRAEDGGGQSTTIRAYFNILDVND 1939

Query: 44   ---QFSKNEYSVSALENLPVNYVLLTVTTNKPRD---LRVKYWL-SNDYGERFSISRQGD 96
                FS + YS S +ENLP+   +L        D    ++ Y + S D   +F++ + G 
Sbjct: 1940 NPPVFSMSSYSTSLMENLPLGSTVLVFNVTDADDGVNSQLSYSIASGDSLGQFAVDKHGV 1999

Query: 97   ISLMQCLDYETEDSYRFTVYATD------TLMTTSATVNISVVNVNDWDPRFRYPQYELF 150
            +  ++ LD E++  Y   +   D      +  T++A V+I +++VND  P F  P+    
Sbjct: 2000 LKTLKALDRESQSFYNLVIQVHDLPQPPTSRFTSTAQVSIILLDVNDNPPMFLSPK---- 2055

Query: 151  LPHIPLADLTP-GSVIGKVEAADGDKG--DRVTLSLRGPYEKMFSIND-SGHISIV-DLS 205
            L +IP  + TP  +V+ K +A D D G    +  +L  P    FSI    G + +  +L 
Sbjct: 2056 LTYIP--ENTPIDTVVFKAQATDPDSGPNSYIEYTLLNPSGNKFSIGTIDGEVHLTGELD 2113

Query: 206  ALNTSTIQLVVVATDTGNPPRQASVPAIM 234
                S   L VVATD G PP  +S   ++
Sbjct: 2114 REEVSNYSLTVVATDKGQPPLSSSTEVVV 2142

May function in the regulation of planar cell polarity. Cadherins are cell-cell interaction molecules.

Mus musculus (taxid: 10090)

>sp|Q9HCU4|CELR2_HUMAN Cadherin EGF LAG seven-pass G-type receptor 2 OS=Homo sapiens GN=CELSR2 PE=1 SV=1

 Score = 67.0 bits (162), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 70/219 (31%), Positives = 102/219 (46%), Gaps = 22/219 (10%)

Query: 25  RYALATLIVSKAGTSLRELQFSKNEYSVSALENLPVNYVLLTVTT---NKPRDLRVKYWL 81
           R ALATL +    T+  +  F + EY  S  ENL V Y +LTV     + P +  + Y L
Sbjct: 269 RSALATLTILVTDTNDHDPVFEQQEYKESLRENLEVGYEVLTVRATDGDAPPNANILYRL 328

Query: 82  SNDYG----ERFSIS-RQGDISLMQCLDYETEDSYRFTVYATDT-----LMTTSATVNIS 131
               G    E F I  R G I     +D E  +SY+ TV A+D        +T+A V +S
Sbjct: 329 LEGSGGSPSEVFEIDPRSGVIRTRGPVDREEVESYQLTVEASDQGRDPGPRSTTAAVFLS 388

Query: 132 VVNVNDWDPRFRYPQYELFLPHIPLADLTPGSVIGKVEAADGDKGDRVTLS---LRGPYE 188
           V + ND  P+F   +Y + +      D+TPG+ + +V A+D DKG    +    + G   
Sbjct: 389 VEDDNDNAPQFSEKRYVVQV----REDVTPGAPVLRVTASDRDKGSNAVVHYSIMSGNAR 444

Query: 189 KMFSIN-DSGHISIVD-LSALNTSTIQLVVVATDTGNPP 225
             F ++  +G + +V  L    T    L V A D G PP
Sbjct: 445 GQFYLDAQTGALDVVSPLDYETTKEYTLRVRAQDGGRPP 483

Receptor that may have an important role in cell/cell signaling during nervous system formation.

Homo sapiens (taxid: 9606)

>sp|O60245|PCDH7_HUMAN Protocadherin-7 OS=Homo sapiens GN=PCDH7 PE=1 SV=2

 Score = 66.6 bits (161), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 62/203 (30%), Positives = 92/203 (45%), Gaps = 21/203 (10%)

Query: 37  GTSLRELQFSKNEYSVSALENLPVNYV--LLTVTTNKPRDLRVKYWLSNDYGERFSIS-R 93
           G S+ E+ F +N        N+P   V  +L    +  ++  + Y L +     F+I   
Sbjct: 536 GQSVVEVYFPEN--------NIPGERVATVLATDADSGKNAEIAYSLDSSVMGIFAIDPD 587

Query: 94  QGDISLMQCLDYETEDSYRFTVYATDT---LMTTSATVNISVVNVNDWDPRFRYPQYELF 150
            GDI +   LD E  D Y F V A D    ++  S TV + V + ND DP+F    +  +
Sbjct: 588 SGDILVNTVLDREQTDRYEFKVNAKDKGIPVLQGSTTVIVQVADKNDNDPKFMQDVFTFY 647

Query: 151 LPHIPLADLTPGSVIGKVEAADGDKGDRVTLSLR-GPYEKMFSI-NDSGHI-SIVDLSAL 207
           +      +L P S +G V   D DKG    +SL       +FSI ND+G I S +     
Sbjct: 648 VKE----NLQPNSPVGMVTVMDADKGRNAEMSLYIEENNNIFSIENDTGTIYSTMSFDRE 703

Query: 208 NTSTIQLVVVATDTGNPPRQASV 230
           + +T    V A D G+PPR A+ 
Sbjct: 704 HQTTYTFRVKAVDGGDPPRSATA 726

Homo sapiens (taxid: 9606)

>sp|Q5DRB5|PCDG5_PANTR Protocadherin gamma-A5 OS=Pan troglodytes GN=PCDHGA5 PE=3 SV=1

 Score = 65.9 bits (159), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 62/197 (31%), Positives = 91/197 (46%), Gaps = 23/197 (11%)

Query: 45  FSKNEYSVSALENLPVNYVLLTVTTNKPRD---LRVKYWLSND---YGERFSI-SRQGDI 97
           F+ +EYSVS  EN+PV   LL +T   P +    ++ Y   N+     E F + S  G+I
Sbjct: 242 FTPSEYSVSVPENIPVGTRLLMLTATDPDEGINGKLTYSFRNEEEKISETFQLDSNLGEI 301

Query: 98  SLMQCLDYETEDSYRFTVYATD-TLMTTSATVNISVVNVNDWDPRFRYPQYELFLPHIPL 156
           S +Q LDYE    Y   V A D   +  SA V ++V +VND  P       E+ L  +  
Sbjct: 302 STLQSLDYEESRFYLMEVVAQDGGALVASAKVVVTVQDVNDNAP-------EVILTSLTS 354

Query: 157 A---DLTPGSVIGKVEAADGDKGDRVTLSLRGPYEKMF----SINDSGH-ISIVDLSALN 208
           +   D  PG+VI      DGD G+   ++   P    F    S+++  H ++  DL    
Sbjct: 355 SLSEDCLPGTVIALFSVHDGDSGENGEIACSIPRNLPFKLEKSVDNYYHLVTTRDLDREE 414

Query: 209 TSTIQLVVVATDTGNPP 225
           TS   + +   D G PP
Sbjct: 415 TSDYNITLTVMDHGTPP 431

Potential calcium-dependent cell-adhesion protein. May be involved in the establishment and maintenance of specific neuronal connections in the brain.

Pan troglodytes (taxid: 9598)

>sp|Q9Y5G8|PCDG5_HUMAN Protocadherin gamma-A5 OS=Homo sapiens GN=PCDHGA5 PE=2 SV=1

 Score = 65.5 bits (158), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 62/197 (31%), Positives = 91/197 (46%), Gaps = 23/197 (11%)

Query: 45  FSKNEYSVSALENLPVNYVLLTVTTNKPRD---LRVKYWLSND---YGERFSI-SRQGDI 97
           F+ +EYSVS  EN+PV   LL +T   P +    ++ Y   N+     E F + S  G+I
Sbjct: 242 FTPSEYSVSVPENIPVGTRLLMLTATDPDEGINGKLTYSFRNEEEKISETFQLDSNLGEI 301

Query: 98  SLMQCLDYETEDSYRFTVYATD-TLMTTSATVNISVVNVNDWDPRFRYPQYELFLPHIPL 156
           S +Q LDYE    Y   V A D   +  SA V ++V +VND  P       E+ L  +  
Sbjct: 302 STLQSLDYEESRFYLMEVVAQDGGALVASAKVVVTVQDVNDNAP-------EVILTSLTS 354

Query: 157 A---DLTPGSVIGKVEAADGDKGDRVTLSLRGPYEKMF----SINDSGH-ISIVDLSALN 208
           +   D  PG+VI      DGD G+   ++   P    F    S+++  H ++  DL    
Sbjct: 355 SISEDCLPGTVIALFSVHDGDSGENGEIACSIPRNLPFKLEKSVDNYYHLLTTRDLDREE 414

Query: 209 TSTIQLVVVATDTGNPP 225
           TS   + +   D G PP
Sbjct: 415 TSDYNITLTVMDHGTPP 431

Potential calcium-dependent cell-adhesion protein. May be involved in the establishment and maintenance of specific neuronal connections in the brain.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	383
328698577	777	PREDICTED: protocadherin beta-11-like [A	0.879	0.433	0.562	2e-99
242020177	708	conserved hypothetical protein [Pediculu	0.733	0.396	0.515	3e-69
345487107	793	PREDICTED: cadherin-related tumor suppre	0.892	0.431	0.350	1e-54
383848809	795	PREDICTED: protocadherin Fat 4-like [Meg	0.723	0.348	0.403	4e-53
328787949	797	PREDICTED: protocadherin Fat 4-like [Api	0.723	0.347	0.4	1e-52
350419819	796	PREDICTED: protocadherin Fat 4-like [Bom	0.723	0.347	0.4	2e-52
340718806	832	PREDICTED: protocadherin Fat 4-like [Bom	0.723	0.332	0.4	2e-52
380012707	790	PREDICTED: protocadherin Fat 4-like [Api	0.723	0.350	0.4	2e-52
321469413	476	hypothetical protein DAPPUDRAFT_51223 [D	0.608	0.489	0.432	3e-51
307196681	807	Protocadherin-like wing polarity protein	0.731	0.346	0.388	2e-48

>gi|328698577|ref|XP_001942850.2| PREDICTED: protocadherin beta-11-like [Acyrthosiphon pisum]

 Score =  369 bits (946), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 198/352 (56%), Positives = 246/352 (69%), Gaps = 15/352 (4%)

Query: 2   INEDDFLQPITLVVRAIQYDNQDRYALATLIVSKAGTSLRELQFSKNEYSVSALENLPVN 61
           I EDD LQP+T+V+RA Q+DN DRYALATL +S+ GTSLRELQF ++ Y    LEN+P++
Sbjct: 318 IPEDDLLQPVTMVIRATQFDNADRYALATLAISRPGTSLRELQFLQDHYQAGVLENVPLD 377

Query: 62  YVLLTVTTNKPRDLRVKYWLSNDYGERFSISRQGDISLMQCLDYETEDSYRFTVYATDTL 121
            VLLTV TNKP+D R+KYWLSN Y + FSIS  GDI L + LDYET D+Y F  +ATD+ 
Sbjct: 378 SVLLTVITNKPKDKRLKYWLSN-YTDIFSISINGDIVLKKPLDYETIDNYVFYAFATDSF 436

Query: 122 MTTSATVNISVVNVNDWDPRFRYPQYELFLPHIPLADLTPGSVIGKVEAADGDKGDRVTL 181
           M TSA VNI+V+NVNDWDPRFRYPQYE ++P I L+ L PG+VIGKVEAADGD+GDRVTL
Sbjct: 437 MNTSAFVNITVLNVNDWDPRFRYPQYEFYVPDISLSQLLPGTVIGKVEAADGDRGDRVTL 496

Query: 182 SLRGPYEKMFSINDSGHISIVDLSALNTSTIQLVVVATDTGNPPRQASVPAIMHFPEAIV 241
           +LRGP  +MF+I DSG I + DLS LNTST  LV VATDTG PPRQASVP I+H P+ +V
Sbjct: 497 ALRGPESRMFAIEDSGDIVLGDLSDLNTSTAHLVAVATDTGIPPRQASVPVIVHLPDTVV 556

Query: 242 QQASSKLNSGTSSTVLIILGVVLIVLGFVIILLILYIHKNKHTK-NNGPPGSSHSKNDSF 300
           + A     S  S TV +I GV+L VL  VII LI++I KNK  K          +K + F
Sbjct: 557 RFAGR--TSANSYTVFVIFGVILGVLSLVIIALIVHIQKNKRPKLGTATNFDVRTKFEGF 614

Query: 301 -LSNVILPEKHVNVVAIPKIQENPVFNGSQEELQTQRGGTNSSIYTATVKKT 351
             +N I  EK   +V +    +NP+FN  ++        +   +YTATVK T
Sbjct: 615 KRTNPIYDEKR--LVGVGTKMQNPLFNPKED--------SADPLYTATVKTT 656

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242020177|ref|XP_002430532.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212515696|gb|EEB17794.1| conserved hypothetical protein [Pediculus humanus corporis]

 Score =  268 bits (686), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 147/285 (51%), Positives = 196/285 (68%), Gaps = 4/285 (1%)

Query: 1   DINEDDFLQPITLVVRAIQYDNQDRYALATLIVSKAGTSLRELQFSKNEYSVSALENLPV 60
           ++ EDD  QP TLVVRA Q DN+DRYALAT+ +S+ G  ++ L F +  Y    LEN PV
Sbjct: 308 ELEEDDLNQPATLVVRATQVDNKDRYALATVTISRKGGGVQTLHFLQKLYLAGVLENAPV 367

Query: 61  NYVLLTVTTNKPRDLRVKYWLSNDYGERFSISRQGDISLMQCLDYETEDSYRFTVYATDT 120
           N V+LT  TN+PRD RV+ WL  + G  F +S  GDI+L++ LDYET D Y F V+ATD 
Sbjct: 368 NSVVLTAVTNRPRDKRVRQWLEKEEGV-FGVSNTGDITLLKPLDYETRDVYVFRVHATDG 426

Query: 121 LMTTSATVNISVVNVNDWDPRFRYPQYELFLPHIPLADLTPGSVIGKVEAADGDKGDRVT 180
            +  +A VNI+V+NVNDWDPRFRYPQYE F   +   DL PG V+G +EAADGD+GD +T
Sbjct: 427 RINDTALVNITVLNVNDWDPRFRYPQYEFF---VSAKDLEPGHVVGTIEAADGDRGDHLT 483

Query: 181 LSLRGPYEKMFSINDSGHISIVDLSALNTSTIQLVVVATDTGNPPRQASVPAIMHFPEAI 240
           LSL+GP+  +F IN+SG +SI+   ++N+S   +V VATD+G PPRQ SVP  +HFP  I
Sbjct: 484 LSLKGPHAHLFRINNSGQLSIISSQSINSSDAHIVAVATDSGLPPRQTSVPITIHFPNKI 543

Query: 241 VQQASSKLNSGTSSTVLIILGVVLIVLGFVIILLILYIHKNKHTK 285
           ++ A++ L+ G S  ++ +   +LI L  +II L LYIHK K  K
Sbjct: 544 IKAANTWLSGGESFLMIGVFSTLLIFLLLIIIALGLYIHKGKRKK 588

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345487107|ref|XP_001601515.2| PREDICTED: cadherin-related tumor suppressor-like [Nasonia vitripennis]

 Score =  220 bits (560), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 132/377 (35%), Positives = 208/377 (55%), Gaps = 35/377 (9%)

Query: 2   INEDDFLQPITLVVRAIQYDNQDRYALATLIVSKAGTSLRE--------LQFSKNEYSVS 53
           + + + +   TLV++A Q DN DRYALAT+IVS+ G+   +        ++F   +Y  S
Sbjct: 312 LQDHELISSATLVIKATQIDNADRYALATVIVSREGSVEDDSANGGRLPVRFVLKDYHAS 371

Query: 54  ALENLPVNYVLLTVTTNKPRDLRVKYWL--SNDYGERFSISRQGDISLMQCLDYETEDSY 111
             EN P   V+LT   NK  D  +++WL  + +  +RFSI+  G++ L   LDYE    +
Sbjct: 372 VPENTPPGSVILTAGVNK-IDPNLRFWLVGAKEDLDRFSITNSGELILKGNLDYERRIQH 430

Query: 112 RFTVYATDTLMTTSATVNISVVNVNDWDPRFRYPQYELFLPHIPLADLTPGSVIGKVEAA 171
            F V+ TD     +A VN+SV +VN+W+PRFR+P+YE          L  GS++G++EAA
Sbjct: 431 SFLVHVTDKHNNDTARVNVSVEDVNEWEPRFRHPRYEFHA-----RTLREGSIVGRLEAA 485

Query: 172 DGDKGDRVTLSLRGPYEKMFSINDSGHISIVDLSALNTSTIQLVVVATDTGNPPRQASVP 231
           DGD+GDRV+LSLRGP  + F I D+G + +  +   N +  +LV +A+DTG PPR + +P
Sbjct: 486 DGDRGDRVSLSLRGPDARSFEIRDNGELILRSMGPFNGTIARLVAIASDTGKPPRSSMIP 545

Query: 232 AIMHFPEAIVQQASSKLNS---GTSSTVLIILGVVLIVLGFVIILLILYIHKNKHTKNNG 288
            I+H P A     +++      G+S  ++ + G VL +LG VI++LILYI+K+K  K+  
Sbjct: 546 VIVHLPSAGATPVAARAAPAWLGSSVLLVAVFGAVLGLLGVVILILILYIYKHKRPKSG- 604

Query: 289 PPGSSHSKNDSFLSNVILPEKHVNVVAIPKIQENPVFNGSQEELQTQRGGTN-------- 340
             GS  S    +     +P     +   P+I    +   + E  + +R G+N        
Sbjct: 605 --GSVSSVGTGYREKSPVPSA---LSPTPQILGASILQDTLEISRDRRCGSNDIDNPVFG 659

Query: 341 --SSIYTATVKKTLSGK 355
             +  Y AT+K  +S +
Sbjct: 660 EDNDSYNATIKSVISNR 676

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383848809|ref|XP_003700040.1| PREDICTED: protocadherin Fat 4-like [Megachile rotundata]

 Score =  214 bits (546), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 121/300 (40%), Positives = 181/300 (60%), Gaps = 23/300 (7%)

Query: 4   EDDFLQPITLVVRAIQYDNQDRYALATLIVSK---------AGTSLRELQFSKNEYSVSA 54
           E + L P T+VV+A Q DN D+YAL+T++VS+         AG  L  ++F K ++  + 
Sbjct: 314 EHELLSPATIVVKATQIDNPDKYALSTIVVSRESEWNVEPTAGGRL-PVKFIKRDHQTNI 372

Query: 55  LENLPVNYVLLTVTTNKPRDLRVKYWLSNDYG--ERFSISRQGDISLMQCLDYETEDSYR 112
            EN P   VLLT   NK  D  +++WL       ERFSI+  G++ L   LDYE    + 
Sbjct: 373 PENTPPGSVLLTTAVNK-VDSNLRFWLEGAVEDLERFSITNSGELILKGTLDYERRIQHS 431

Query: 113 FTVYATDTLMTTSATVNISVVNVNDWDPRFRYPQYELFLPHIPLADLTPGSVIGKVEAAD 172
           F V  TD     ++ VN+SV +VN+W+PRFR+P+YE        A L  GS++GK+EAAD
Sbjct: 432 FLVRVTDGHHNDTSRVNVSVEDVNEWEPRFRHPRYEFHA-----ATLREGSIVGKLEAAD 486

Query: 173 GDKGDRVTLSLRGPYEKMFSINDSGHISIVDLSALNTSTIQLVVVATDTGNPPRQASVPA 232
           GD+ D+V+LSLRGP  + F I D+G + +   + +N S  +LV VA+D+G PPR + +P 
Sbjct: 487 GDRDDKVSLSLRGPDARSFEIRDNGELILRSAATINGSLARLVAVASDSGRPPRSSMIPV 546

Query: 233 IMHFPEA----IVQQASSKLNSGTSSTVLIILGVVLIVLGFVIILLILYIHKNKHTKNNG 288
           I+H P +    I  +A+     G+S  ++ + G VL +LG +I++LILYI+K+K  K +G
Sbjct: 547 IVHIPSSGSVPIAARAAPAW-LGSSVLLVAVFGAVLGLLGVIILVLILYIYKHKRPKTSG 605

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328787949|ref|XP_624925.3| PREDICTED: protocadherin Fat 4-like [Apis mellifera]

 Score =  213 bits (542), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 120/300 (40%), Positives = 181/300 (60%), Gaps = 23/300 (7%)

Query: 4   EDDFLQPITLVVRAIQYDNQDRYALATLIVSK---------AGTSLRELQFSKNEYSVSA 54
           E + L P T+VV+A Q DN D+YAL+T++VS+         AG  L  ++F + ++  S 
Sbjct: 314 EHELLSPATIVVKATQLDNPDKYALSTIVVSRETDWNVEPTAGGRL-PIKFIRRDHQTSI 372

Query: 55  LENLPVNYVLLTVTTNKPRDLRVKYWLSNDYG--ERFSISRQGDISLMQCLDYETEDSYR 112
            EN P   VLLT   NK  D  +++WL       ERFSI+  G++ L   LDYE    + 
Sbjct: 373 PENTPPGSVLLTTGVNK-LDSNLRFWLVGAIEDLERFSITNSGELILKGTLDYERRVQHS 431

Query: 113 FTVYATDTLMTTSATVNISVVNVNDWDPRFRYPQYELFLPHIPLADLTPGSVIGKVEAAD 172
           F V  TD     ++ VN+SV +VN+W+PRFR+P+YE        A    GS++GK+EAAD
Sbjct: 432 FLVRVTDGHHNDTSRVNVSVEDVNEWEPRFRHPRYEFHA-----ATSREGSIVGKLEAAD 486

Query: 173 GDKGDRVTLSLRGPYEKMFSINDSGHISIVDLSALNTSTIQLVVVATDTGNPPRQASVPA 232
           GD+ D+++LSLRGP  + F I D+G + +  ++ +N S  +LV VA+D+G PPR + +P 
Sbjct: 487 GDRDDKISLSLRGPDARSFEIRDNGELILRSVATVNGSLARLVAVASDSGRPPRSSMIPV 546

Query: 233 IMHFPEA----IVQQASSKLNSGTSSTVLIILGVVLIVLGFVIILLILYIHKNKHTKNNG 288
           I+H P +    I  +A+     G+S  ++ + G VL +LG +I++LILYI+KNK  K +G
Sbjct: 547 IVHVPNSGSLPIAARAAPAW-LGSSVLLVAVFGAVLGLLGVIILVLILYIYKNKRPKTSG 605

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350419819|ref|XP_003492311.1| PREDICTED: protocadherin Fat 4-like [Bombus impatiens]

 Score =  213 bits (541), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 120/300 (40%), Positives = 182/300 (60%), Gaps = 23/300 (7%)

Query: 4   EDDFLQPITLVVRAIQYDNQDRYALATLIVSK---------AGTSLRELQFSKNEYSVSA 54
           E + L P T+V +A Q DN D+YAL+T++VS+         AG  L  ++F + ++  S 
Sbjct: 314 EHELLSPATIVAKATQIDNPDKYALSTIVVSRESDWNVEPTAGGRL-PVRFIRKDHETSI 372

Query: 55  LENLPVNYVLLTVTTNKPRDLRVKYWL--SNDYGERFSISRQGDISLMQCLDYETEDSYR 112
            EN P   VLLT   NK  D  +++WL  + +  ERFSI+  G++ L   LDYE    + 
Sbjct: 373 PENTPPGSVLLTTGVNK-VDSNLRFWLVGAMEDLERFSITNSGELILKGTLDYERRVQHS 431

Query: 113 FTVYATDTLMTTSATVNISVVNVNDWDPRFRYPQYELFLPHIPLADLTPGSVIGKVEAAD 172
           F V  TD     ++ VN+SV +VN+W+PRFR+P+YE        A L  GS++GK+EAAD
Sbjct: 432 FLVRVTDGHHNDTSRVNVSVEDVNEWEPRFRHPRYEFHA-----ATLREGSIVGKLEAAD 486

Query: 173 GDKGDRVTLSLRGPYEKMFSINDSGHISIVDLSALNTSTIQLVVVATDTGNPPRQASVPA 232
           GD+ D+V+LSLRGP  + F I D+G + +   + +N +  +LV VA+D+G PPR + +P 
Sbjct: 487 GDRDDKVSLSLRGPDARSFEIRDNGELILRSATTINGTLARLVAVASDSGRPPRSSMIPV 546

Query: 233 IMHFPEA----IVQQASSKLNSGTSSTVLIILGVVLIVLGFVIILLILYIHKNKHTKNNG 288
           I+H P +    I  +A+     G+S  ++ + G VL +LG +I++LILYI+KNK  K +G
Sbjct: 547 IVHIPNSGSLPIAARAAPAW-LGSSVLLVAVFGAVLGLLGVIILVLILYIYKNKRPKASG 605

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340718806|ref|XP_003397854.1| PREDICTED: protocadherin Fat 4-like [Bombus terrestris]

 Score =  213 bits (541), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 120/300 (40%), Positives = 180/300 (60%), Gaps = 23/300 (7%)

Query: 4   EDDFLQPITLVVRAIQYDNQDRYALATLIVSK---------AGTSLRELQFSKNEYSVSA 54
           E + L P T+V +A Q DN D+YAL+T++VS+         AG  L  ++F + ++  S 
Sbjct: 314 EHELLSPATIVAKATQIDNPDKYALSTIVVSRESDWNVEPTAGGRL-PVRFIRKDHQTSI 372

Query: 55  LENLPVNYVLLTVTTNKPRDLRVKYWLSNDYG--ERFSISRQGDISLMQCLDYETEDSYR 112
            EN P   VLLT   NK  D  +++WL       ERFSI+  G++ L   LDYE    + 
Sbjct: 373 PENTPPGSVLLTTGVNK-VDSNLRFWLVGAIEDLERFSITNSGELILKGTLDYERRVQHS 431

Query: 113 FTVYATDTLMTTSATVNISVVNVNDWDPRFRYPQYELFLPHIPLADLTPGSVIGKVEAAD 172
           F V  TD     ++ VN+SV +VN+W+PRFR+P+YE        A L  GS++GK+EAAD
Sbjct: 432 FLVRVTDGHHNDTSRVNVSVEDVNEWEPRFRHPRYEFHA-----ATLREGSIVGKLEAAD 486

Query: 173 GDKGDRVTLSLRGPYEKMFSINDSGHISIVDLSALNTSTIQLVVVATDTGNPPRQASVPA 232
           GD+ D+V+LSLRGP  + F I D+G + +   + +N +  +LV VA+D+G PPR + +P 
Sbjct: 487 GDRDDKVSLSLRGPDARSFEIRDNGELILRSATTINGTLARLVAVASDSGRPPRSSMIPV 546

Query: 233 IMHFPEA----IVQQASSKLNSGTSSTVLIILGVVLIVLGFVIILLILYIHKNKHTKNNG 288
           I+H P +    I  +A+     G+S  ++ + G VL +LG +I++LILYI+KNK  K +G
Sbjct: 547 IVHIPNSGSLPIAARAAPAW-LGSSVLLVAVFGAVLGLLGVIILVLILYIYKNKRPKASG 605

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380012707|ref|XP_003690419.1| PREDICTED: protocadherin Fat 4-like [Apis florea]

 Score =  212 bits (540), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 120/300 (40%), Positives = 180/300 (60%), Gaps = 23/300 (7%)

Query: 4   EDDFLQPITLVVRAIQYDNQDRYALATLIVSK---------AGTSLRELQFSKNEYSVSA 54
           E + L P T+VV+A Q DN D+YAL+T++VS+         AG  L  ++F + ++  S 
Sbjct: 305 EHELLSPATIVVKATQLDNPDKYALSTIVVSREADWSVEPTAGGRL-PVKFIRRDHETSI 363

Query: 55  LENLPVNYVLLTVTTNKPRDLRVKYWLSNDYG--ERFSISRQGDISLMQCLDYETEDSYR 112
            EN P   VLLT   NK  D  +++WL       ERFSI+  G++ L   LDYE    + 
Sbjct: 364 PENTPPGSVLLTTGVNK-VDSNLRFWLVGAVEDLERFSITNSGELILKGTLDYERRVQHS 422

Query: 113 FTVYATDTLMTTSATVNISVVNVNDWDPRFRYPQYELFLPHIPLADLTPGSVIGKVEAAD 172
           F V  TD     ++ VN+SV +VN+W+PRFR+P+YE        A    GS++GK+EAAD
Sbjct: 423 FLVRVTDGHHNDTSRVNVSVEDVNEWEPRFRHPRYEFHA-----ATSREGSIVGKLEAAD 477

Query: 173 GDKGDRVTLSLRGPYEKMFSINDSGHISIVDLSALNTSTIQLVVVATDTGNPPRQASVPA 232
           GD+ D+++LSLRGP  + F I D+G + +  ++ +N S  +LV VA+D+G PPR + +P 
Sbjct: 478 GDRDDKISLSLRGPDARSFEIRDNGELILKSVATVNGSLARLVAVASDSGRPPRSSMIPV 537

Query: 233 IMHFPEA----IVQQASSKLNSGTSSTVLIILGVVLIVLGFVIILLILYIHKNKHTKNNG 288
           I+H P +    I  +A+     G S  ++ + G VL +LG +I++LILYI+KNK  K +G
Sbjct: 538 IVHVPNSGSLPIAARAAPAWLGG-SVLLVAVFGAVLGLLGVIILVLILYIYKNKRPKTSG 596

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321469413|gb|EFX80393.1| hypothetical protein DAPPUDRAFT_51223 [Daphnia pulex]

 Score =  209 bits (531), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 103/238 (43%), Positives = 158/238 (66%), Gaps = 5/238 (2%)

Query: 2   INEDDFLQPITLVVRAIQYDNQDRYALATLIVSKAGTSLRELQFSKNEYSVSALENLPVN 61
           + +++ +QP+ LVV+A Q DN DRYAL TL VS++ +   +LQ+ +  YSV  LEN+PV+
Sbjct: 196 LEDNELVQPVILVVKAHQVDNLDRYALTTLTVSRSWSFSPQLQYLQRRYSVQVLENVPVD 255

Query: 62  YVLLTVTTNKPRDLRVKYWLSNDYG--ERFSISRQGDISLMQCLDYETEDSYRFTVYATD 119
             +L +  NKP D  +++ + +  G  + FS+ + G+I L + LDYET+ +++F V+ TD
Sbjct: 256 TTILAMAINKPIDQSIRFVMESHNGTEQAFSVDKTGEIKLERSLDYETQMTHQFVVWVTD 315

Query: 120 TLMTTSATVNISVVNVNDWDPRFRYPQYELFLPHIPLADLTPGSVIGKVEAADGDKGDRV 179
            L   +ATV ++V++VNDWDPRF   +YE  +     + L  GSVIG+V+  DGD  DRV
Sbjct: 316 GLTNDTATVEVTVLDVNDWDPRFELAEYEFIVKE---SALPVGSVIGRVQVDDGDAADRV 372

Query: 180 TLSLRGPYEKMFSINDSGHISIVDLSALNTSTIQLVVVATDTGNPPRQASVPAIMHFP 237
            L L+GP  + F++ D+G +   D S+LN++ I L+VVA D+G PPRQASVP  ++ P
Sbjct: 373 NLQLKGPESRAFNVQDNGDVVFSDPSSLNSTVIHLMVVARDSGIPPRQASVPLKINLP 430

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307196681|gb|EFN78140.1| Protocadherin-like wing polarity protein stan [Harpegnathos saltator]

 Score =  199 bits (506), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 117/301 (38%), Positives = 172/301 (57%), Gaps = 21/301 (6%)

Query: 2   INEDDFLQPITLVVRAIQYDNQDRYALATLIVSK--------AGTSLRELQFSKNEYSVS 53
           ++E +   P T+V++A Q DN DRYALAT++VS+         G  L  ++F   ++  S
Sbjct: 315 LHEHELTSPATIVIKATQVDNPDRYALATIVVSREDGVGPTTVGGRL-PVKFVLKDHQTS 373

Query: 54  ALENLPVNYVLLTVTTNK--PRDLRVKYWLSNDYGERFSISRQGDISLMQCLDYETEDSY 111
             E+ P   VLLT   N     DLR +   +++  ERF I+  G++ L   LDYE    +
Sbjct: 374 VPEDTPSGTVLLTTRVNNTGANDLRFRLMGASEDLERFFITNSGELILRGKLDYERRVQH 433

Query: 112 RFTVYATDTLMTTSATVNISVVNVNDWDPRFRYPQYELFLPHIPLADLTPGSVIGKVEAA 171
            F VY TD     ++ VNISV  VN+WDPRFR+ +YE          L  GSV+GK+EAA
Sbjct: 434 NFLVYVTDGYYNDTSRVNISVEGVNEWDPRFRHARYEFHA-----RSLREGSVVGKLEAA 488

Query: 172 DGDKGDRVTLSLRGPYEKMFSINDSGHISIVDLSALNTSTIQLVVVATDTGNPPRQASVP 231
           DGD+G++V+LSLRGP  + F I D+G + +      N S  +LV VA+D+G P + A+  
Sbjct: 489 DGDRGEKVSLSLRGPDARFFEIRDNGELVLRSPGPFNGSLARLVAVASDSGTPTKSATTQ 548

Query: 232 AIMHFPEA----IVQQASSKLNSGTSSTVLIILGVVLIVLGFVIILLILYIHKNKHTKNN 287
            I+H P      I  +A+     G+S  ++ +   VL +LG VI++LILYI+K+K  K+ 
Sbjct: 549 VIVHIPNGGSLPIAARAAPAW-LGSSVLLVAVFAAVLGLLGVVILILILYIYKHKRPKSG 607

Query: 288 G 288
           G
Sbjct: 608 G 608

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	383
FB|FBgn0039294	786	Cad96Cb "Cadherin 96Cb" [Droso	0.587	0.286	0.4	1.1e-39
FB|FBgn0037963	1975	Cad87A "Cadherin 87A" [Drosoph	0.467	0.090	0.326	3.6e-12
ZFIN|ZDB-GENE-070122-2	2941	celsr2 "cadherin, EGF LAG seve	0.540	0.070	0.317	5.6e-12
UNIPROTKB|Q9Y5F7	938	PCDHGC4 "Protocadherin gamma-C	0.543	0.221	0.286	1.1e-11
UNIPROTKB|Q6V0I7	4981	FAT4 "Protocadherin Fat 4" [Ho	0.579	0.044	0.293	1.3e-11
ZFIN|ZDB-GENE-050610-1	935	pcdh2g10 "protocadherin 2 gamm	0.545	0.223	0.282	3.1e-11
ZFIN|ZDB-GENE-041118-15	939	pcdh2aa15 "protocadherin 2 alp	0.566	0.231	0.278	3.2e-11
MGI|MGI:3045256	4981	Fat4 "FAT tumor suppressor hom	0.480	0.036	0.292	4.7e-11
ZFIN|ZDB-GENE-081104-299	1101	pcdh7b "protocadherin 7b" [Dan	0.569	0.198	0.293	5.1e-11
UNIPROTKB|E2R353	4591	FAT1 "Uncharacterized protein"	0.569	0.047	0.299	5.6e-11

FB|FBgn0039294 Cad96Cb "Cadherin 96Cb" [Drosophila melanogaster (taxid:7227)]

 Score = 416 (151.5 bits), Expect = 1.1e-39, Sum P(2) = 1.1e-39
 Identities = 94/235 (40%), Positives = 138/235 (58%)

Query:     6 DFLQPITLVVRAIQYDNQDRYALATLIVSKAGT--SLRELQFSKNEYSVSALENLPVNYV 63
             D     TLVV+A Q DN DRYAL T+ +++ G+   L  L F +  + +   E+  V   
Sbjct:   319 DVANGATLVVKATQIDNPDRYALTTVQLTRPGSHSDLSTLAFVQKRFVMRIREDTAVGNR 378

Query:    64 LLTVTTNKPRDLRVKYWLSNDYGERF-SISRQGDISLMQCLDYETEDSYRFTVYATDTLM 122
             +L + TNKP    +KY + +    +F S+   G++ L + LDYE    + F V ATD + 
Sbjct:   379 ILALPTNKPGK-HLKYVIPDPVNSQFFSVGSLGELVLAKPLDYEKMTKHEFQVLATDGMT 437

Query:   123 TTSATVNISVVNVNDWDPRFRYPQYELFLPHIPL----ADLTPGSVIGKVEAADGDKGDR 178
              ++A + + V++VNDW+PRFR   YE  +P        AD   G +IGKVEAADGD+ D+
Sbjct:   438 NSTAELTLEVIDVNDWEPRFRETHYEFMVPKSQSLQSRADSFEGVLIGKVEAADGDRNDK 497

Query:   179 VTLSLRGPYEKMFSINDSGHISI--VDLSALNTSTIQLVVVATDTGNPPRQASVP 231
             + LSLRG +  +F I+ +G+I +    L +LN ST+ L+ +ATDTG PPR  SVP
Sbjct:   498 LELSLRGQHAGLFEIDSTGNIYMRPEQLQSLNESTVHLIAIATDTGVPPRSTSVP 552

GO:0016339 "calcium-dependent cell-cell adhesion" evidence=ISS

GO:0005887 "integral to plasma membrane" evidence=ISS

GO:0005509 "calcium ion binding" evidence=IEA

GO:0007156 "homophilic cell adhesion" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0007424 "open tracheal system development" evidence=IGI

FB|FBgn0037963 Cad87A "Cadherin 87A" [Drosophila melanogaster (taxid:7227)]

 Score = 198 (74.8 bits), Expect = 3.6e-12, P = 3.6e-12
 Identities = 65/199 (32%), Positives = 101/199 (50%)

Query:    49 EYSVSALENLPVNYVLLTVTTNKPRDLRVKYWLS-NDYGERFSISR-QGDISLMQCLDYE 106
             +  +  +E  PV  VL T+  N       ++ +S NDY   F+I++  G I  +  LDYE
Sbjct:  1008 QIKLQMVEEQPVGTVLTTLQANDEDSSIGEFNISDNDY---FAINQTSGMIYTIARLDYE 1064

Query:   107 TEDSYRFTVYATDT---LMTTSATVNISVVNVNDWDPRFRYPQYELFLPHIPLADLTP-G 162
                  +F V  +DT    +T +A V + ++N+ND DP+F    Y     +  + + +P G
Sbjct:  1065 VVKEVKFQVTVSDTGVPALTATADVVVDIINLNDNDPKFSQSDY-----YFNVTENSPRG 1119

Query:   163 SVIGKVEAADGDKG--DRVTLSLRGPYEKMFSIND-SGHISIVDLSALNTSTIQ---LVV 216
             +V GKVEA DGD G    +T +L G   K FSI+  +G++ + + S L+   I+   L V
Sbjct:  1120 TVAGKVEAHDGDVGVFGEITYTLIGENNKYFSIDAYTGNVMVANSSILDREQIKELTLSV 1179

Query:   217 VATDTGNPPRQASVPAIMH 235
             VA D      Q S  A +H
Sbjct:  1180 VAQDKAPAAVQKSATATIH 1198

GO:0005887 "integral to plasma membrane" evidence=ISS

GO:0016339 "calcium-dependent cell-cell adhesion" evidence=ISS;NAS

GO:0016021 "integral to membrane" evidence=NAS

GO:0007156 "homophilic cell adhesion" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

ZFIN|ZDB-GENE-070122-2 celsr2 "cadherin, EGF LAG seven-pass G-type receptor 2" [Danio rerio (taxid:7955)]

 Score = 198 (74.8 bits), Expect = 5.6e-12, P = 5.6e-12
 Identities = 72/227 (31%), Positives = 106/227 (46%)

Query:    15 VRAIQYDNQDRYALATLIVSKAGTSLRELQFSKNEYSVSALENLPVNYVLLTVTT---NK 71
             V A+ +    R A+ATL V+ + T+  +  F + +Y  S  ENL + Y +LTV     + 
Sbjct:   321 VTAVDHGTPRRTAMATLTVTVSDTNDHDPAFEQQDYKESIRENLEIGYEVLTVRATDGDA 380

Query:    72 PRDLRVKYWLSNDYGER--FSI-SRQGDISLMQCLDYETEDSYRFTVYATDT-----LMT 123
             P +  + Y L N  G    F I SR G I     +D ET DSY   V A D        +
Sbjct:   381 PINGNILYHLLNSNGTNDVFEIDSRSGVIRTRGLVDRETVDSYMLMVEANDQGRDPGPRS 440

Query:   124 TSATVNISVVNVNDWDPRFRYPQYELFLPHIPLADLTPGSVIGKVEAADGDKGDRVTLS- 182
              +ATV+I V + ND  P+F   +Y + +P     DLTP + I +V A D D+G+   +  
Sbjct:   441 ATATVHIVVEDDNDNAPQFSEKRYIVQVPE----DLTPNTEILQVTATDQDRGNNAVVHF 496

Query:   183 --LRGPYEKMFSIN-DSGHISIVD-LSALNTSTIQLVVVATDTGNPP 225
               + G     F I+  +G + +V  L         L + A D G PP
Sbjct:   497 SIMSGNTRGQFYIDAQTGKLDLVSQLDYEMNKEYTLRIRAQDGGRPP 543

GO:0004930 "G-protein coupled receptor activity" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0007155 "cell adhesion" evidence=IEA

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0007156 "homophilic cell adhesion" evidence=IEA

GO:0007218 "neuropeptide signaling pathway" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0004888 "transmembrane signaling receptor activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA;IDA

GO:0007166 "cell surface receptor signaling pathway" evidence=IEA

GO:0021754 "facial nucleus development" evidence=IMP

GO:0016337 "cell-cell adhesion" evidence=IGI;IDA;IMP

GO:0055113 "epiboly involved in gastrulation with mouth forming second" evidence=IGI

GO:0004871 "signal transducer activity" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0008104 "protein localization" evidence=IGI

UNIPROTKB|Q9Y5F7 PCDHGC4 "Protocadherin gamma-C4" [Homo sapiens (taxid:9606)]

 Score = 190 (71.9 bits), Expect = 1.1e-11, P = 1.1e-11
 Identities = 66/230 (28%), Positives = 106/230 (46%)

Query:    13 LVVRAIQYDNQDRYALATLIVSKAGTSLRELQFSKNEYSVSALENLPVNYVLLTVTTNKP 72
             LV+ A+   N  R   A L VS    +     F ++ Y +S LE+ P   VL+ +  + P
Sbjct:   210 LVLTAVDGGNPPRSGTAELRVSVLDVNDNAPAFQQSSYRISVLESAPAGMVLIQLNASDP 269

Query:    73 RDL----RVKYWLSNDYGER----FSIS-RQGDISLMQCLDYETEDSYRFTVYATD---T 120
              DL     V ++ S    +R    FS+    G ++L+  LD+E+E+ Y F V A D    
Sbjct:   270 -DLGPSGNVTFYFSGHTPDRVRNLFSLHPTTGKLTLLGPLDFESENYYEFDVRARDGGSP 328

Query:   121 LMTTSATVNISVVNVNDWDPRFRYPQYELFLPHIPLADLTPGSVIGKVEAADGDKGDRVT 180
              M    ++ + +++VND  P   Y      L  +P     PG+V+  +   D D G    
Sbjct:   329 AMEQHCSLRVDLLDVNDNAP---YITVTSELGTLP-ESAEPGTVVALISVQDPDSGSNGD 384

Query:   181 LSLRGPYEKMFSINDS--GHISIVDLSALNT---STIQLVVVATDTGNPP 225
             +SLR P    F++  +     S+V    L+    S+  ++V A+D GNPP
Sbjct:   385 VSLRIPDHLPFALKSAFRNQFSLVTAGPLDREAKSSYDIMVTASDAGNPP 434

GO:0005509 "calcium ion binding" evidence=IEA

GO:0007156 "homophilic cell adhesion" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

UNIPROTKB|Q6V0I7 FAT4 "Protocadherin Fat 4" [Homo sapiens (taxid:9606)]

 Score = 199 (75.1 bits), Expect = 1.3e-11, Sum P(2) = 1.3e-11
 Identities = 76/259 (29%), Positives = 118/259 (45%)

Query:     7 FLQPITLV---VRAIQYDNQDRYALATLIVSKAG--TSLR------ELQ-----FSKNEY 50
             FL PIT V    R + Y+ Q  Y L        G  T++R      ++      FS N Y
Sbjct:  1890 FLNPITGVFNLTRLLDYEVQQYYILTVRAEDGGGQFTTIRVYFNILDVNDNPPIFSLNSY 1949

Query:    51 SVSALENLPVNYVLLTVTTNKPRD---LRVKYWL-SNDYGERFSISRQGDISLMQCLDYE 106
             S S +ENLPV   +L        D    ++ Y + S D   +F++ + G + +++ LD E
Sbjct:  1950 STSLMENLPVGSTVLVFNVTDADDGINSQLTYSIASGDSLGQFTVDKNGVLKVLKALDRE 2009

Query:   107 TEDSYRFTVYATD------TLMTTSATVNISVVNVNDWDPRFRYPQYELFLPHIPLADLT 160
             ++  Y   V   D      +  T++A V+I +++VND  P F  P+    L +IP  + T
Sbjct:  2010 SQSFYNLVVQVHDLPQIPASRFTSTAQVSIILLDVNDNPPTFLSPK----LTYIP--ENT 2063

Query:   161 P-GSVIGKVEAADGDKGDR--VTLSLRGPYEKMFSIND-SGHISIV-DLSALNTSTIQLV 215
             P  +V+ K +A D D G    +  +L  P    FSI    G + +  +L     S   L 
Sbjct:  2064 PIDTVVFKAQATDPDSGPNSYIEYTLLNPLGNKFSIGTIDGEVRLTGELDREEVSNYTLT 2123

Query:   216 VVATDTGNPPRQASVPAIM 234
             VVATD G P   +S   ++
Sbjct:  2124 VVATDKGQPSLSSSTEVVV 2142

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0007156 "homophilic cell adhesion" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

ZFIN|ZDB-GENE-050610-1 pcdh2g10 "protocadherin 2 gamma 10" [Danio rerio (taxid:7955)]

 Score = 186 (70.5 bits), Expect = 3.1e-11, P = 3.1e-11
 Identities = 65/230 (28%), Positives = 112/230 (48%)

Query:    11 ITLVVRAIQYDNQDRYALATLIVSKAGTSLRELQFSKNEYSVSALENLPVNYVLLTVTT- 69
             +TL++ A+      R     + V+    +     FS+  Y VS  EN PV+ V++TV+  
Sbjct:   196 LTLILTAVDGGTPPRSGTVAIHVTVLDANDNAPVFSQAVYKVSLPENTPVDTVVVTVSAT 255

Query:    70 --NKPRDLRVKY---WLSNDYGERFSISR-QGDISLMQCLDYETEDSYRFTVYATDTL-M 122
               ++ ++  V Y    +S D  + FS+    G+I L   +DYE+E+S    V ATD   +
Sbjct:   256 DADEGQNGEVTYEFGHVSEDLLDTFSLDTFSGEIKLTGLIDYESENSIELLVQATDGQGL 315

Query:   123 TTSATVNISVVNVNDWDPRFRYPQYELFLPHIPLADLTPGSVIG--KVEAADGDKGDRVT 180
              +  TV I V +VND  P+      ++ +P   L    PG+ +G   V+  D +   +V 
Sbjct:   316 ASHCTVLIDVTDVNDNAPKIMTKSVKISIPESAL----PGTEVGIINVQDRDSENNGQVR 371

Query:   181 LSLRG--PYEKMFSINDSGHISIVDLSALNT---STIQLVVVATDTGNPP 225
              S++   P++ + SI +  + S+V    L+    S   + + ATD G+PP
Sbjct:   372 CSIQQNVPFKLVPSIKN--YYSLVTTGELDRELLSEYNITITATDEGSPP 419

GO:0005509 "calcium ion binding" evidence=IEA

GO:0007155 "cell adhesion" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0007156 "homophilic cell adhesion" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

ZFIN|ZDB-GENE-041118-15 pcdh2aa15 "protocadherin 2 alpha a 15" [Danio rerio (taxid:7955)]

 Score = 186 (70.5 bits), Expect = 3.2e-11, P = 3.2e-11
 Identities = 67/241 (27%), Positives = 114/241 (47%)

Query:    11 ITLVVRAIQYDNQDRYALATLIVSKAGTSLRELQFSKNEYSVSALENLPVNYVLLTVTT- 69
             I L + A+      +    T+I+     +     F K  YSV+  EN PV   +L V   
Sbjct:   210 IKLQLTALDGGRPPKSGKMTIIIDVLDINDNAPVFIKEVYSVTLNENTPVGTTILRVNAT 269

Query:    70 --NKPRDLRVKYWLSNDYGER----FSISR-QGDISLMQCLDYETEDSYRFTVYATD--- 119
               ++ ++  V Y L +D  ++    F+++   G+I +   LD+E +D Y   + A+D   
Sbjct:   270 DLDEGQNGVVVYSLGHDVNDKLRKLFNVNPVTGEIVVTGLLDFEVKDIYEIDIQASDKGI 329

Query:   120 TLMTTSATVNISVVNVNDWDPRFRYPQYELFLPHIPLADLTPGSVIGKVEAADGDKG--D 177
               +TT  +V I + +VND +P+         +P     D  PG+ +  +  +D D G   
Sbjct:   330 APLTTDKSVTIKIADVNDNEPQIEVTSLSSTIPE----DSKPGTTVALISVSDLDSGING 385

Query:   178 RVTLSLRG--PYEKMFSINDSGHISIVDLSALNTSTI---QLVVVATDTGNPPRQASVPA 232
             RVT SL    P++ M S  ++ + S+V  SAL+  TI    + + A D G PP  +SV +
Sbjct:   386 RVTCSLSENIPFQLMPSSQENTY-SLVTTSALDRETIAHYDITLEAKDAGQPPL-SSVKS 443

Query:   233 I 233
             +
Sbjct:   444 V 444

GO:0005886 "plasma membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0007155 "cell adhesion" evidence=IEA

GO:0007156 "homophilic cell adhesion" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

MGI|MGI:3045256 Fat4 "FAT tumor suppressor homolog 4 (Drosophila)" [Mus musculus (taxid:10090)]

 Score = 192 (72.6 bits), Expect = 4.7e-11, P = 4.7e-11
 Identities = 60/205 (29%), Positives = 98/205 (47%)

Query:    45 FSKNEYSVSALENLPVNYVLLTVTTNKPRD---LRVKYWL-SNDYGERFSISRQGDISLM 100
             FS + YS S +ENLP+   +L        D    ++ Y + S D   +F++ + G +  +
Sbjct:  1944 FSMSSYSTSLMENLPLGSTVLVFNVTDADDGVNSQLSYSIASGDSLGQFAVDKHGVLKTL 2003

Query:   101 QCLDYETEDSYRFTVYATD------TLMTTSATVNISVVNVNDWDPRFRYPQYELFLPHI 154
             + LD E++  Y   +   D      +  T++A V+I +++VND  P F  P+    L +I
Sbjct:  2004 KALDRESQSFYNLVIQVHDLPQPPTSRFTSTAQVSIILLDVNDNPPMFLSPK----LTYI 2059

Query:   155 PLADLTP-GSVIGKVEAADGDKGDR--VTLSLRGPYEKMFSIND-SGHISIV-DLSALNT 209
             P  + TP  +V+ K +A D D G    +  +L  P    FSI    G + +  +L     
Sbjct:  2060 P--ENTPIDTVVFKAQATDPDSGPNSYIEYTLLNPSGNKFSIGTIDGEVHLTGELDREEV 2117

Query:   210 STIQLVVVATDTGNPPRQASVPAIM 234
             S   L VVATD G PP  +S   ++
Sbjct:  2118 SNYSLTVVATDKGQPPLSSSTEVVV 2142

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0007155 "cell adhesion" evidence=IEA

GO:0007156 "homophilic cell adhesion" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

ZFIN|ZDB-GENE-081104-299 pcdh7b "protocadherin 7b" [Danio rerio (taxid:7955)]

 Score = 185 (70.2 bits), Expect = 5.1e-11, P = 5.1e-11
 Identities = 68/232 (29%), Positives = 103/232 (44%)

Query:     8 LQPITLVVRAIQYDNQDRYALATLIVSKAGTSLRELQFSKNEYSVSALEN-LPVNYVLLT 66
             +Q   +V+ A+   +    +  +LIV     +     FSK+   VS  EN  P   V+  
Sbjct:   469 VQEYNVVIVAVDSGSPSLSSNNSLIVKVGDMNDNPPVFSKSTVEVSFPENNAPGERVVTV 528

Query:    67 VT--TNKPRDLRVKYWLSNDYGERFSISRQ-GDISLMQCLDYETEDSYRFTVYATDTLMT 123
             V    +  ++  + Y L +     FSI    GDI +   LD E  + Y F V A D  M 
Sbjct:   529 VALDADSGKNAEISYSLDSSVNGIFSIDADTGDIRVNTILDREQTERYEFKVIAKDKGMP 588

Query:   124 T---SATVNISVVNVNDWDPRFRYPQYELFLPHIPLADLTPGSVIGKVEAADGDKGDRVT 180
                 SATV + V + ND +P+F    +  ++      +L P S +G +   D DKG    
Sbjct:   589 VLQGSATVVVLVADKNDNEPKFMQDVFTFYIQE----NLQPNSPVGMITVMDADKGQNAD 644

Query:   181 LSLR-GPYEKMFSI-NDSGHI-SIVDLSALNTSTIQLVVVATDTGNPPRQAS 229
             +SL     E +FSI N++G I S +       +     V A D G+PPR A+
Sbjct:   645 MSLYIEEEENIFSIDNNTGTIFSNMAFDREQRNNYSFRVKAVDGGDPPRSAT 696

GO:0005509 "calcium ion binding" evidence=IEA

GO:0007155 "cell adhesion" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0007156 "homophilic cell adhesion" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|E2R353 FAT1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 191 (72.3 bits), Expect = 5.6e-11, P = 5.6e-11
 Identities = 71/237 (29%), Positives = 113/237 (47%)

Query:     5 DDFLQPI-TLVVRAIQYDNQDRY-ALATLIVSKAGTSLRELQFSKNEYSVSALENLPVNY 62
             D  LQ + TL ++A+      R  A  TL+VS    +     F   EY  +  E++ +  
Sbjct:  3191 DRELQAVYTLTLKAVDQGLPRRLTATGTLVVSVLDINDNPPVFEYREYGATVSEDILIGT 3250

Query:    63 VLLTVTTNKPRDLR----VKYWL--SNDYGERFSI-SRQGDISLMQCLDYETEDSYRFTV 115
              +L V     RD+     + Y +   N++G +FSI S+ G I +++ LDYE+   Y  TV
Sbjct:  3251 EVLQVYAAS-RDIEANAEITYSIISGNEHG-KFSIDSKTGAIFIIETLDYESSHEYYLTV 3308

Query:   116 YATD---TLMTTSATVNISVVNVNDWDPRFRYPQYELFLPHIPLADLTPGSVIGKVEAAD 172
              ATD     ++  ATVNI+V ++ND  P F    Y   +    L + +  +V+   +  D
Sbjct:  3309 EATDGGTPSLSDVATVNINVTDINDNSPVFSQDTYTAVISEDALLEQSVITVMA--DDTD 3366

Query:   173 GDKGDRVTLSL-RGPYEKMFSINDS-GHISIVDLSALNT-STIQLVVVATDTGNPPR 226
             G    R+  S+  G     F+I+ + G + +  L    T S   L V A+D G+PPR
Sbjct:  3367 GPSNSRIRYSIIDGNQGSPFTIDPAKGEVKVTKLLDRETISGYTLTVQASDNGSPPR 3423

GO:0016021 "integral to membrane" evidence=IEA

GO:0007156 "homophilic cell adhesion" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	383
cd11304	98	cd11304, Cadherin_repeat, Cadherin tandem repeat d	3e-12
pfam00028	92	pfam00028, Cadherin, Cadherin domain	8e-09
cd11304	98	cd11304, Cadherin_repeat, Cadherin tandem repeat d	2e-08
smart00112	81	smart00112, CA, Cadherin repeats	3e-08
pfam00028	92	pfam00028, Cadherin, Cadherin domain	3e-04

>gnl|CDD|206637 cd11304, Cadherin_repeat, Cadherin tandem repeat domain

 Score = 62.3 bits (152), Expect = 3e-12
 Identities = 36/97 (37%), Positives = 52/97 (53%), Gaps = 8/97 (8%)

Query: 49  EYSVSALENLPVNYVLLTVTTN---KPRDLRVKY-WLSNDYGERFSISRQ-GDISLMQCL 103
            Y VS  EN P   V+LTV+        +  V Y  +S +    FSI    G+I+  + L
Sbjct: 1   SYEVSVPENAPPGTVVLTVSATDPDSGENGEVTYSIVSGNEDGLFSIDPSTGEITTAKPL 60

Query: 104 DYETEDSYRFTVYATD---TLMTTSATVNISVVNVND 137
           D E + SY  TV ATD     ++++ATV I+V++VND
Sbjct: 61  DREEQSSYTLTVTATDGGGPPLSSTATVTITVLDVND 97

Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion. The cadherin repeat domains occur as tandem repeats in the extracellular regions, which are thought to mediate cell-cell contact when bound to calcium. They play numerous roles in cell fate, signalling, proliferation, differentiation, and migration; members include E-, N-, P-, T-, VE-, CNR-, proto-, and FAT-family cadherin, desmocollin, and desmoglein, a large variety of domain architectures with varying repeat copy numbers. Cadherin-repeat containing proteins exist as monomers, homodimers, or heterodimers. Length = 98

>gnl|CDD|215665 pfam00028, Cadherin, Cadherin domain

 Score = 51.9 bits (125), Expect = 8e-09
 Identities = 35/92 (38%), Positives = 45/92 (48%), Gaps = 10/92 (10%)

Query: 50  YSVSALENLPVNYVLLTVTTNKPRDL----RVKYW-LSNDYGERFSISRQ-GDISLMQCL 103
           YS S  EN PV   +LTVT     DL    R+ Y  L    G  F I    GD+S  + L
Sbjct: 1   YSASVPENAPVGTEVLTVTATDA-DLGPNGRIFYSILGGGPGGWFRIDPDTGDLSTTKPL 59

Query: 104 DYETEDSYRFTVYATD---TLMTTSATVNISV 132
           D E+   Y  TV ATD     ++++ TV I+V
Sbjct: 60  DRESIGEYELTVLATDSGGPPLSSTTTVTITV 91

Length = 92

>gnl|CDD|206637 cd11304, Cadherin_repeat, Cadherin tandem repeat domain

 Score = 51.5 bits (124), Expect = 2e-08
 Identities = 27/79 (34%), Positives = 40/79 (50%), Gaps = 5/79 (6%)

Query: 158 DLTPGSVIGKVEAADGDKGD--RVTLSL-RGPYEKMFSIN-DSGHISIVD-LSALNTSTI 212
           +  PG+V+  V A D D G+   VT S+  G  + +FSI+  +G I+    L     S+ 
Sbjct: 9   NAPPGTVVLTVSATDPDSGENGEVTYSIVSGNEDGLFSIDPSTGEITTAKPLDREEQSSY 68

Query: 213 QLVVVATDTGNPPRQASVP 231
            L V ATD G PP  ++  
Sbjct: 69  TLTVTATDGGGPPLSSTAT 87

Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion. The cadherin repeat domains occur as tandem repeats in the extracellular regions, which are thought to mediate cell-cell contact when bound to calcium. They play numerous roles in cell fate, signalling, proliferation, differentiation, and migration; members include E-, N-, P-, T-, VE-, CNR-, proto-, and FAT-family cadherin, desmocollin, and desmoglein, a large variety of domain architectures with varying repeat copy numbers. Cadherin-repeat containing proteins exist as monomers, homodimers, or heterodimers. Length = 98

>gnl|CDD|214520 smart00112, CA, Cadherin repeats

 Score = 50.0 bits (120), Expect = 3e-08
 Identities = 25/67 (37%), Positives = 39/67 (58%), Gaps = 5/67 (7%)

Query: 76  RVKYWL-SNDYGERFSI-SRQGDISLMQCLDYETEDSYRFTVYATD---TLMTTSATVNI 130
           +V Y + S +    FSI    G+I+  + LD E +  Y  TV ATD     ++++ATV I
Sbjct: 12  KVTYSILSGNDDGLFSIDPETGEITTTKPLDREEQPEYTLTVEATDGGGPPLSSTATVTI 71

Query: 131 SVVNVND 137
           +V++VND
Sbjct: 72  TVLDVND 78

Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion. Cadherin domains occur as repeats in the extracellular regions which are thought to mediate cell-cell contact when bound to calcium. Length = 81

>gnl|CDD|215665 pfam00028, Cadherin, Cadherin domain

 Score = 39.2 bits (92), Expect = 3e-04
 Identities = 22/81 (27%), Positives = 35/81 (43%), Gaps = 5/81 (6%)

Query: 158 DLTPGSVIGKVEAADGDKGDRVTLS---LRGPYEKMFSIN-DSGHISIVD-LSALNTSTI 212
           +   G+ +  V A D D G    +    L G     F I+ D+G +S    L   +    
Sbjct: 8   NAPVGTEVLTVTATDADLGPNGRIFYSILGGGPGGWFRIDPDTGDLSTTKPLDRESIGEY 67

Query: 213 QLVVVATDTGNPPRQASVPAI 233
           +L V+ATD+G PP  ++    
Sbjct: 68  ELTVLATDSGGPPLSSTTTVT 88

Length = 92

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	383
KOG4289|consensus	2531		100.0
KOG4289|consensus	2531		100.0
KOG1219|consensus	4289		100.0
KOG1219|consensus	4289		100.0
cd00031	199	CA Cadherin repeat domain; Cadherins are glycoprot	99.96
cd00031	199	CA Cadherin repeat domain; Cadherins are glycoprot	99.85
PF00028	93	Cadherin: Cadherin domain; InterPro: IPR002126 Cad	99.63
KOG1834|consensus	952		99.6
PF00028	93	Cadherin: Cadherin domain; InterPro: IPR002126 Cad	99.47
smart00112	79	CA Cadherin repeats. Cadherins are glycoproteins i	99.43
KOG1834|consensus	952		99.35
smart00112	79	CA Cadherin repeats. Cadherins are glycoproteins i	98.94
PF08758	90	Cadherin_pro: Cadherin prodomain like; InterPro: I	97.8
PF08758	90	Cadherin_pro: Cadherin prodomain like; InterPro: I	97.4
PF08266	84	Cadherin_2: Cadherin-like; InterPro: IPR013164 Cad	97.36
TIGR01965	99	VCBS_repeat VCBS repeat. This domain of about 100	95.86
smart00736	97	CADG Dystroglycan-type cadherin-like domains. Cadh	95.75
PF15102	146	TMEM154: TMEM154 protein family	94.47
KOG0196|consensus	996		94.23
smart00736	97	CADG Dystroglycan-type cadherin-like domains. Cadh	94.21
TIGR01965	99	VCBS_repeat VCBS repeat. This domain of about 100	92.25
PF08374	221	Protocadherin: Protocadherin; InterPro: IPR013585	91.71
KOG3597|consensus	442		90.13
PF01102	122	Glycophorin_A: Glycophorin A; InterPro: IPR001195	89.62
PF01034	64	Syndecan: Syndecan domain; InterPro: IPR001050 The	88.96
PF08266	84	Cadherin_2: Cadherin-like; InterPro: IPR013164 Cad	88.55
PF07495	66	Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This regi	88.09
TIGR00845	928	caca sodium/calcium exchanger 1. This model is spe	86.52
PF02439	38	Adeno_E3_CR2: Adenovirus E3 region protein CR2; In	85.78
PF12877	684	DUF3827: Domain of unknown function (DUF3827); Int	81.02
PF05345	49	He_PIG: Putative Ig domain; InterPro: IPR008009 Th	80.46
PF02439	38	Adeno_E3_CR2: Adenovirus E3 region protein CR2; In	80.43
KOG1094|consensus	807		80.41

>KOG4289|consensus

Probab=100.00  E-value=2.3e-39  Score=337.76  Aligned_cols=241  Identities=29%  Similarity=0.374  Sum_probs=225.3

Q ss_pred             CCcCCCCeEEEEEEEEECCCCCceEEEEEEEEEeeCCCCCCeeecCcEEEEEECCCCCCcEEEEEEeEeCCC---CeeEE
Q psy4697           3 NEDDFLQPITLVVRAIQYDNQDRYALATLIVSKAGTSLRELQFSKNEYSVSALENLPVNYVLLTVTTNKPRD---LRVKY   79 (383)
Q Consensus         3 ~DrE~~~~y~l~V~a~D~g~~~~~s~~~v~V~V~DvNdn~P~F~~~~y~~~V~En~~~gt~v~~v~A~D~D~---~~v~Y   79 (383)
                      .|||.++.+.|.|+|.|++.|.++++++|+|.|.|.|||.|+|+|.+|.-++.||.+.|+.|++|+|+|.|.   +++.|
T Consensus       227 lDREt~e~HvlrVtA~d~~~P~~SAtttv~V~V~D~nDhsPvFEq~~Y~e~lREn~evGy~vLtvrAtD~Dsp~Nani~Y  306 (2531)
T KOG4289|consen  227 LDRETKETHVLRVTAQDHGDPRRSATTTVTVLVLDTNDHSPVFEQDEYREELRENLEVGYEVLTVRATDGDSPPNANIRY  306 (2531)
T ss_pred             hhhhhhheeEEEEEeeecCCCcccceeEEEEEEeecCCCCcccchhHHHHHHhhccccCceEEEEEeccCCCCCCCceEE
Confidence            489999999999999999999999999999999999999999999999999999999999999999999996   89999


Q ss_pred             EEec-CCCCCEEEcC-cccEEEcccCCcccCcEEEEEEEEecCC---ceeEEEEEEEEeecCCCCCcccCCceeEEEecc
Q psy4697          80 WLSN-DYGERFSISR-QGDISLMQCLDYETEDSYRFTVYATDTL---MTTSATVNISVVNVNDWDPRFRYPQYELFLPHI  154 (383)
Q Consensus        80 si~~-~~~~~F~Id~-tG~I~~~~~LD~E~~~~y~~~V~A~D~~---~~s~~tV~I~V~DvNDn~P~f~~~~~~~~v~~~  154 (383)
                      ++.+ +..+.|.||+ +|.|.+..+||||+...|++.|+|.|.|   ...++.|.|+|+|+|||+|+|....|.+.|.  
T Consensus       307 rl~eg~~~~~f~in~rSGvI~T~a~lDRE~~~~y~L~VeAsDqG~~pgp~Ta~V~itV~D~NDNaPqFse~~Yvvqv~--  384 (2531)
T KOG4289|consen  307 RLLEGNAKNVFEINPRSGVISTRAPLDREELESYQLDVEASDQGRPPGPRTAMVEITVEDENDNAPQFSEKRYVVQVR--  384 (2531)
T ss_pred             EecCCCccceeEEcCccceeeccCccCHHhhhheEEEEEeccCCCCCCCceEEEEEEEEecCCCCccccccceEEEec--
Confidence            9998 4778999997 9999999999999999999999999976   3459999999999999999999999999999  


Q ss_pred             CCCCCCCCceEEEEEeeeCCCCC--eEEEEEe-CCCCCCEEEcC-CCcEEEeccCCCCcceEEEEEEEeeCCCCCceeEE
Q psy4697         155 PLADLTPGSVIGKVEAADGDKGD--RVTLSLR-GPYEKMFSIND-SGHISIVDLSALNTSTIQLVVVATDTGNPPRQASV  230 (383)
Q Consensus       155 ~~e~~~~g~~v~~v~A~D~D~g~--~i~ysi~-~~~~~~F~i~~-tG~i~l~~~~~~~~~~y~L~V~a~D~g~p~~sst~  230 (383)
                        |+..+++.|.+|+|+|.|.|.  .+.|+|. |+..+.|.|+. +|++.+..+.+++...|.|.|.|+|+|.|++++++
T Consensus       385 --Edvt~~avvlrV~AtDrD~g~Ng~VHYsi~Sgn~~G~f~id~~tGel~vv~plD~e~~~ytl~IrAqDggrPpLsn~s  462 (2531)
T KOG4289|consen  385 --EDVTPPAVVLRVTATDRDKGTNGKVHYSIASGNGRGQFYIDSLTGELDVVEPLDFENSEYTLRIRAQDGGRPPLSNTS  462 (2531)
T ss_pred             --ccCCCCceEEEEEecccCCCcCceEEEEeeccCccccEEEecccceEEEeccccccCCeeEEEEEcccCCCCCccCCC
Confidence              999999999999999999986  6999997 77889999997 99999887655555599999999999999999999


Q ss_pred             EEEEEEeCCcccCccccc
Q psy4697         231 PAIMHFPEAIVQQASSKL  248 (383)
Q Consensus       231 tv~I~v~~~~~~~~p~~~  248 (383)
                      -|.|+| -+.|+++|.|.
T Consensus       463 gl~iqV-lDINDhaPifv  479 (2531)
T KOG4289|consen  463 GLVIQV-LDINDHAPIFV  479 (2531)
T ss_pred             ceEEEE-EecCCCCceeE
Confidence            999999 77888888764

>KOG4289|consensus

Probab=100.00  E-value=2.1e-36  Score=315.72  Aligned_cols=243  Identities=23%  Similarity=0.353  Sum_probs=222.5

Q ss_pred             CCcCCCCeEEEEEEEEECCCCCceEEEEEEEEEeeCCCCCCeeecCcEEEEEECCCCCCcEEEEEEeEeCCC---CeeEE
Q psy4697           3 NEDDFLQPITLVVRAIQYDNQDRYALATLIVSKAGTSLRELQFSKNEYSVSALENLPVNYVLLTVTTNKPRD---LRVKY   79 (383)
Q Consensus         3 ~DrE~~~~y~l~V~a~D~g~~~~~s~~~v~V~V~DvNdn~P~F~~~~y~~~V~En~~~gt~v~~v~A~D~D~---~~v~Y   79 (383)
                      .|||..+.|+|.|.|.|.|.++.-.++.|.|.|.|+|||+|+|....|.+.|.||..+++.|++|+|+|.|.   +.|.|
T Consensus       332 lDRE~~~~y~L~VeAsDqG~~pgp~Ta~V~itV~D~NDNaPqFse~~Yvvqv~Edvt~~avvlrV~AtDrD~g~Ng~VHY  411 (2531)
T KOG4289|consen  332 LDREELESYQLDVEASDQGRPPGPRTAMVEITVEDENDNAPQFSEKRYVVQVREDVTPPAVVLRVTATDRDKGTNGKVHY  411 (2531)
T ss_pred             cCHHhhhheEEEEEeccCCCCCCCceEEEEEEEEecCCCCccccccceEEEecccCCCCceEEEEEecccCCCcCceEEE
Confidence            489999999999999999999887899999999999999999999999999999999999999999999995   89999


Q ss_pred             EEec-CCCCCEEEcC-cccEEEcccCCcccCcEEEEEEEEecCC---ceeEEEEEEEEeecCCCCCcccCCceeEEEecc
Q psy4697          80 WLSN-DYGERFSISR-QGDISLMQCLDYETEDSYRFTVYATDTL---MTTSATVNISVVNVNDWDPRFRYPQYELFLPHI  154 (383)
Q Consensus        80 si~~-~~~~~F~Id~-tG~I~~~~~LD~E~~~~y~~~V~A~D~~---~~s~~tV~I~V~DvNDn~P~f~~~~~~~~v~~~  154 (383)
                      +|.+ +..+.|.||. +|+|.+..+||+|.. .|.+.|.|.|+|   ++.+.-+.|+|+|+|||+|.|...++..++.  
T Consensus       412 si~Sgn~~G~f~id~~tGel~vv~plD~e~~-~ytl~IrAqDggrPpLsn~sgl~iqVlDINDhaPifvstpfq~tvl--  488 (2531)
T KOG4289|consen  412 SIASGNGRGQFYIDSLTGELDVVEPLDFENS-EYTLRIRAQDGGRPPLSNTSGLVIQVLDINDHAPIFVSTPFQATVL--  488 (2531)
T ss_pred             EeeccCccccEEEecccceEEEeccccccCC-eeEEEEEcccCCCCCccCCCceEEEEEecCCCCceeEechhhhhhh--
Confidence            9987 6677899996 999999999999998 999999999987   6777777899999999999999999989999  


Q ss_pred             CCCCCCCCceEEEEEeeeCCCCC--eEEEEEeCCCCCCEEEcC-CCcEEEec-cCCCCcceEEEEEEEeeCCCCCceeEE
Q psy4697         155 PLADLTPGSVIGKVEAADGDKGD--RVTLSLRGPYEKMFSIND-SGHISIVD-LSALNTSTIQLVVVATDTGNPPRQASV  230 (383)
Q Consensus       155 ~~e~~~~g~~v~~v~A~D~D~g~--~i~ysi~~~~~~~F~i~~-tG~i~l~~-~~~~~~~~y~L~V~a~D~g~p~~sst~  230 (383)
                        |+.+.|..+..+.|.|.|+|+  .+.|++.|-  +.|.|+. +|.|...+ ++++....|.|.|.|+|+|.|++++.+
T Consensus       489 --Env~lg~~v~~vqaidadsg~na~l~y~laG~--~pf~I~~~SG~Itvtk~ldrEt~~~ysl~V~ard~gtp~l~tst  564 (2531)
T KOG4289|consen  489 --ENVPLGYLVCHVQAIDADSGENARLHYSLAGV--GPFQINNGSGWITVTKELDRETVEHYSLGVEARDHGTPPLSTST  564 (2531)
T ss_pred             --hcccccceEEEEecccCCCCcccceeeeeccC--CCeeEecCCceEEEeecccccccceEEEEEEEcCCCCCcccccc
Confidence              999999999999999999997  589998754  3899997 99999766 488889999999999999999999999


Q ss_pred             EEEEEEeCCcccCcccccCCCCc
Q psy4697         231 PAIMHFPEAIVQQASSKLNSGTS  253 (383)
Q Consensus       231 tv~I~v~~~~~~~~p~~~~~~~~  253 (383)
                      .|.|.+ .++|++.|.|....+.
T Consensus       565 sI~Vtv-~dvndndP~Ft~~eyt  586 (2531)
T KOG4289|consen  565 SISVTV-LDVNDNDPTFTQKEYT  586 (2531)
T ss_pred             eEEEEe-cccCCCCCccccCceE
Confidence            999999 7888887777544333

>KOG1219|consensus

Probab=100.00  E-value=3.2e-33  Score=300.03  Aligned_cols=241  Identities=22%  Similarity=0.289  Sum_probs=224.3

Q ss_pred             CcCCCCeEEEEEEEEECCCCCceEEEEEEEEEeeCCCC--CCeeecCcEEEEEECCCCCCcEEEEEEeEeCCC---CeeE
Q psy4697           4 EDDFLQPITLVVRAIQYDNQDRYALATLIVSKAGTSLR--ELQFSKNEYSVSALENLPVNYVLLTVTTNKPRD---LRVK   78 (383)
Q Consensus         4 DrE~~~~y~l~V~a~D~g~~~~~s~~~v~V~V~DvNdn--~P~F~~~~y~~~V~En~~~gt~v~~v~A~D~D~---~~v~   78 (383)
                      |.|+.+-|+|.|.|.|+|.|.+++..++.|.+.|+|+|  ||.|..-.-+..|.||+|.|+.++.+.|.|.|.   +.++
T Consensus       910 Df~k~~fynLsv~a~d~g~p~lss~chl~Vevldv~enlhpp~F~~~v~e~~V~EnapiGT~vi~i~A~dedsgldg~l~  989 (4289)
T KOG1219|consen  910 DFEKSDFYNLSVTAVDRGTPILSSICHLEVEVLDVNENLHPPEFISFVTEGHVLENAPIGTIVIRIQARDEDSGLDGELS  989 (4289)
T ss_pred             ccccccceEEEEEEecCCCcceeeeEEEEEEEeccCCCCCCcchheeeeeeeEeecCCcceEEEEEEEecCCCCccceEE
Confidence            56999999999999999999999999999999999888  999998888999999999999999999999996   8999


Q ss_pred             EEEec-CCCCCEEEcC-cccEEEcccCCcccCcEEEEEEEEecCC---ceeEEEEEEEEeecCCCCCcccCCceeEEEec
Q psy4697          79 YWLSN-DYGERFSISR-QGDISLMQCLDYETEDSYRFTVYATDTL---MTTSATVNISVVNVNDWDPRFRYPQYELFLPH  153 (383)
Q Consensus        79 Ysi~~-~~~~~F~Id~-tG~I~~~~~LD~E~~~~y~~~V~A~D~~---~~s~~tV~I~V~DvNDn~P~f~~~~~~~~v~~  153 (383)
                      |+|.. +..+.|+||+ +|.|++.+.||||....|.|+|.|+|.|   +++.+.|.|.|+|+|||+|+|..+.|..+|. 
T Consensus       990 Y~I~~gdg~g~FsId~~tG~irTl~~lDrE~ks~YwltveA~D~gt~~~ssv~~vyI~ieDvNDn~Pq~s~pvy~asI~- 1068 (4289)
T KOG1219|consen  990 YKIRTGDGDGIFSIDSTTGSIRTLKALDREKKSSYWLTVEAKDLGTVPLSSVCEVYIEIEDVNDNVPQFSSPVYYASIS- 1068 (4289)
T ss_pred             EEEEcCCcceeEEecCCcceEeechhhchhhcceEEEEEEEEecCCCccccceeEEEEEEecCCCCcccCCceEeeeec-
Confidence            99987 6677899995 9999999999999999999999999987   7889999999999999999999999999999 


Q ss_pred             cCCCCCCCCceEEEEEeeeCCCC--CeEEEEEe-CCCCCCEEEcC-CCcEEE-eccCCCCcceEEEEEEEeeCCCCCcee
Q psy4697         154 IPLADLTPGSVIGKVEAADGDKG--DRVTLSLR-GPYEKMFSIND-SGHISI-VDLSALNTSTIQLVVVATDTGNPPRQA  228 (383)
Q Consensus       154 ~~~e~~~~g~~v~~v~A~D~D~g--~~i~ysi~-~~~~~~F~i~~-tG~i~l-~~~~~~~~~~y~L~V~a~D~g~p~~ss  228 (383)
                         |+++.+..|.++.|.|+|+.  .++.|.|. |+..++|.|++ +|-|.+ ++++++.+.++.|.|.++|.|.|++.+
T Consensus      1069 ---enSp~~vsivq~ea~D~Dsssn~kLmykI~sGnyq~FF~Id~~TG~iTt~r~LDRE~qdEHiLeVTi~D~gep~l~s 1145 (4289)
T KOG1219|consen 1069 ---ENSPETVSIVQAEANDPDSSSNQKLMYKITSGNYQGFFQIDPETGLITTIRRLDREKQDEHILEVTIQDNGEPWLCS 1145 (4289)
T ss_pred             ---cCCCCceEEEEeccCCCCcccCcceEEEEccCCccceEEEccccceeeeehhhcccccccceEEEEEecCCCCcccc
Confidence               99999999999999999954  38999997 88999999998 999984 556999999999999999999999999


Q ss_pred             EEEEEEEEeCCcccCcccccC
Q psy4697         229 SVPAIMHFPEAIVQQASSKLN  249 (383)
Q Consensus       229 t~tv~I~v~~~~~~~~p~~~~  249 (383)
                      .+.|.|.| .+.|++.|.|..
T Consensus      1146 ~~rviV~I-ldvNdnsp~Flq 1165 (4289)
T KOG1219|consen 1146 NQRVIVSI-LDVNDNSPRFLQ 1165 (4289)
T ss_pred             ceEEEEEE-eeccCCchhhhh
Confidence            99999999 778888777653

>KOG1219|consensus

Probab=100.00  E-value=5.2e-33  Score=298.41  Aligned_cols=236  Identities=26%  Similarity=0.364  Sum_probs=208.6

Q ss_pred             CcCCCCeEEEEEEEEECCCCCceEEEEEEEEEeeCCCCCCeeecCcEEEEEECCCCCCcEEEEEEeEeCCCCeeEEEEe-
Q psy4697           4 EDDFLQPITLVVRAIQYDNQDRYALATLIVSKAGTSLRELQFSKNEYSVSALENLPVNYVLLTVTTNKPRDLRVKYWLS-   82 (383)
Q Consensus         4 DrE~~~~y~l~V~a~D~g~~~~~s~~~v~V~V~DvNdn~P~F~~~~y~~~V~En~~~gt~v~~v~A~D~D~~~v~Ysi~-   82 (383)
                      |++....|.|.|+|+|.|.|++.+.++|.|+|.+..++.|+|+.+.|.|+|+|+.+.|+.|++|+|.|.|. .+-|++. 
T Consensus      2535 ~~~en~tl~l~vkA~D~g~P~~~s~ttV~v~vl~e~v~lPrFSep~y~fsvpEDv~vG~~Ig~v~a~~a~~-~~i~~~v~ 2613 (4289)
T KOG1219|consen 2535 DGLENSTLHLFVKAIDDGKPRRRSNTTVIVTVLPEDVNLPRFSEPIYTFSVPEDVPVGEEIGQVSASDADE-HVIYSLVL 2613 (4289)
T ss_pred             hcccCcEEEEEEEeccCCCCCcccceEEEEEecCcccCcccccCceEEEeccccCCCCCeeeEEeecccCC-ceEEEEEe
Confidence            67888999999999999999999999999999999999999999999999999999999999999999885 4455553 


Q ss_pred             c-----CCCCCEEEcC-cccEEEcccCCcccCcEEEEEEEEecCC-ceeEEEEEEEEeecCCCCCcccCCceeEEEeccC
Q psy4697          83 N-----DYGERFSISR-QGDISLMQCLDYETEDSYRFTVYATDTL-MTTSATVNISVVNVNDWDPRFRYPQYELFLPHIP  155 (383)
Q Consensus        83 ~-----~~~~~F~Id~-tG~I~~~~~LD~E~~~~y~~~V~A~D~~-~~s~~tV~I~V~DvNDn~P~f~~~~~~~~v~~~~  155 (383)
                      +     +....|++|. +|.|.+.++||+|..++|++.|.|++++ ..+.++|.|.|.|+|||+|+|..+.|.+.+.   
T Consensus      2614 ~gt~Esn~d~~Fsvdr~TG~i~v~ksLD~E~kk~yqi~v~a~~~~~vva~tsv~vqVkDvNDNaPvFe~d~y~f~i~--- 2690 (4289)
T KOG1219|consen 2614 GGTPESNPDLPFSVDRNTGMIKVNKSLDHEKKKSYQIKVKATCGQWVVAETSVFVQVKDVNDNAPVFEKDPYLFIIE--- 2690 (4289)
T ss_pred             CCCCCCCCCCceEEcCCCceEEeccccchhhhceEEEEEEeecCCceEEEEEEEEEeecccCCCccccCCceeEEEe---
Confidence            3     3445699995 9999999999999999999999999987 4889999999999999999999999999999   


Q ss_pred             CCCCCCCceEEEEEeeeCCCCC--eEEEEEeCCCCCCEEEcC-CCcEEEec-cCCCCcceEEEEEEEeeCCCCCceeEEE
Q psy4697         156 LADLTPGSVIGKVEAADGDKGD--RVTLSLRGPYEKMFSIND-SGHISIVD-LSALNTSTIQLVVVATDTGNPPRQASVP  231 (383)
Q Consensus       156 ~e~~~~g~~v~~v~A~D~D~g~--~i~ysi~~~~~~~F~i~~-tG~i~l~~-~~~~~~~~y~L~V~a~D~g~p~~sst~t  231 (383)
                       |+.+.|+.|.+++|.|.|+|.  +++|++... ..+|.|++ +|+|.+.. ++.+.+..|.|.|.|+|+|.|+.  .++
T Consensus      2691 -En~pvGtsV~qf~AsD~Ds~~nGqirysl~~~-v~yF~In~etGwlTt~~eld~ek~d~y~lkv~AtDhG~~ss--q~~ 2766 (4289)
T KOG1219|consen 2691 -ENSPVGTSVIQFHASDMDSGNNGQIRYSLTSP-VPYFAINPETGWLTTLFELDLEKQDLYSLKVVATDHGVPSS--QAT 2766 (4289)
T ss_pred             -ccCCCCceEEEEEeeccCCCCCceEEEEEcCC-cceEEEcCCCCeeeehhhhccccCCceEEEEEEecCCcccc--cce
Confidence             999999999999999999986  799999854 44999997 99998654 56677999999999999999854  455


Q ss_pred             EEEEEeCCcccCccccc
Q psy4697         232 AIMHFPEAIVQQASSKL  248 (383)
Q Consensus       232 v~I~v~~~~~~~~p~~~  248 (383)
                      +.|.| .+.|+.+|.|.
T Consensus      2767 v~v~v-tDvndspprf~ 2782 (4289)
T KOG1219|consen 2767 VLVHV-TDVNDSPPRFQ 2782 (4289)
T ss_pred             EEEEE-EecCCCcchhh
Confidence            55555 56777766654

>cd00031 CA Cadherin repeat domain; Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion; these domains occur as repeats in the extracellular regions which are thought to mediate cell-cell contact when bound to calcium; plays a role in cell fate, signalling, proliferation, differentiation, and migration; members include E-, N-, P-, T-, VE-,CNR-,proto-,and FAT-family cadherin, desmocollin, and desmoglein, exists as monomers or dimers (hetero- and homo-); two copies of the repeat are present here

Probab=99.96  E-value=1.6e-27  Score=214.73  Aligned_cols=185  Identities=36%  Similarity=0.537  Sum_probs=167.2

Q ss_pred             cEEEEEECCCCCCcEEEEEEeEeCCC---CeeEEEEecCCC-CCEEEcC-cccEEEcccCCcccCcEEEEEEEEecCC-c
Q psy4697          49 EYSVSALENLPVNYVLLTVTTNKPRD---LRVKYWLSNDYG-ERFSISR-QGDISLMQCLDYETEDSYRFTVYATDTL-M  122 (383)
Q Consensus        49 ~y~~~V~En~~~gt~v~~v~A~D~D~---~~v~Ysi~~~~~-~~F~Id~-tG~I~~~~~LD~E~~~~y~~~V~A~D~~-~  122 (383)
                      .|.+.|.||.++|+.++++.|.|+|.   +.++|+|.+... .+|.|++ +|.|++.+.||||....|.|.|+|.|.| .
T Consensus         1 ~~~~~i~En~~~g~~v~~~~a~D~D~~~~~~~~y~i~~~~~~~~F~i~~~tG~l~~~~~lD~e~~~~~~l~v~a~D~g~~   80 (199)
T cd00031           1 SYSVSVPENAPPGTVVGTVSATDPDSGENGRVTYSILGGNEDGLFSIDPNTGVITTTKPLDREEQSEYTLTVVASDGGGP   80 (199)
T ss_pred             CeEEEEeCCCCCCCEEEEEEEECCCCCCCceEEEEEeCCCCcccEEEeCCCCEEEECCCCCCcCCceEEEEEEEEECCcC
Confidence            47899999999999999999999997   579999998554 7999997 8999999999999999999999999954 3


Q ss_pred             --eeEEEEEEEEeecCCCCCcccCCceeEEEeccCCCCCCCCceEEEEEeeeCCCC--CeEEEEEeCCCC-CCEEEcC-C
Q psy4697         123 --TTSATVNISVVNVNDWDPRFRYPQYELFLPHIPLADLTPGSVIGKVEAADGDKG--DRVTLSLRGPYE-KMFSIND-S  196 (383)
Q Consensus       123 --~s~~tV~I~V~DvNDn~P~f~~~~~~~~v~~~~~e~~~~g~~v~~v~A~D~D~g--~~i~ysi~~~~~-~~F~i~~-t  196 (383)
                        ++...++|.|.|+|||+|.|..+.|.+.+.    |+.++|+.++++.|+|+|.+  ..++|+|.+... .+|.|++ +
T Consensus        81 ~~~~~~~v~I~V~d~Nd~~P~~~~~~~~~~v~----e~~~~~~~i~~~~a~D~D~~~~~~~~y~l~~~~~~~~f~i~~~~  156 (199)
T cd00031          81 PLSSTATVTVTVLDVNDNPPVFEQSSYEASVP----ENAPPGTVVGTVTATDADSGENAKLTYSILSGNDKELFSIDPNT  156 (199)
T ss_pred             cceeEEEEEEEEccCCCCCCcccccceEEEEe----CCCCCCCEEEEEEEEcCCCCCCccEEEEEeCCCCCCEEEEeCCc
Confidence              388999999999999999999888999999    99999999999999999986  589999986544 7999998 9


Q ss_pred             CcEEEec-cCCCCcceEEEEEEEeeCCCCCceeEEEEEEEEe
Q psy4697         197 GHISIVD-LSALNTSTIQLVVVATDTGNPPRQASVPAIMHFP  237 (383)
Q Consensus       197 G~i~l~~-~~~~~~~~y~L~V~a~D~g~p~~sst~tv~I~v~  237 (383)
                      |.|.+.. .+++....|.|.|.|+|.+.|.++++++++|.+.
T Consensus       157 G~i~~~~~ld~e~~~~~~l~v~a~D~~~~~~~~~~~i~i~v~  198 (199)
T cd00031         157 GIITLAKPLDREEKSSYELTVVATDGGGPPLSSTATVTVTVL  198 (199)
T ss_pred             eEEEeCCccCCccCceEEEEEEEEECCCCCceeEEEEEEEEE
Confidence            9998875 4677777999999999999999999999999884

>cd00031 CA Cadherin repeat domain; Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion; these domains occur as repeats in the extracellular regions which are thought to mediate cell-cell contact when bound to calcium; plays a role in cell fate, signalling, proliferation, differentiation, and migration; members include E-, N-, P-, T-, VE-,CNR-,proto-,and FAT-family cadherin, desmocollin, and desmoglein, exists as monomers or dimers (hetero- and homo-); two copies of the repeat are present here

Probab=99.85  E-value=9.7e-20  Score=163.90  Aligned_cols=132  Identities=30%  Similarity=0.332  Sum_probs=123.1

Q ss_pred             CCcCCCCeEEEEEEEEECCCCCceEEEEEEEEEeeCCCCCCeeecCcEEEEEECCCCCCcEEEEEEeEeCCC---CeeEE
Q psy4697           3 NEDDFLQPITLVVRAIQYDNQDRYALATLIVSKAGTSLRELQFSKNEYSVSALENLPVNYVLLTVTTNKPRD---LRVKY   79 (383)
Q Consensus         3 ~DrE~~~~y~l~V~a~D~g~~~~~s~~~v~V~V~DvNdn~P~F~~~~y~~~V~En~~~gt~v~~v~A~D~D~---~~v~Y   79 (383)
                      .|||..+.|.|.|+|.|.|.|.+++...|.|.|.|+|||+|.|....|.+.|.|+.++|+.++++.|+|+|.   +.++|
T Consensus        60 lD~e~~~~~~l~v~a~D~g~~~~~~~~~v~I~V~d~Nd~~P~~~~~~~~~~v~e~~~~~~~i~~~~a~D~D~~~~~~~~y  139 (199)
T cd00031          60 LDREEQSEYTLTVVASDGGGPPLSSTATVTVTVLDVNDNPPVFEQSSYEASVPENAPPGTVVGTVTATDADSGENAKLTY  139 (199)
T ss_pred             CCCcCCceEEEEEEEEECCcCcceeEEEEEEEEccCCCCCCcccccceEEEEeCCCCCCCEEEEEEEEcCCCCCCccEEE
Confidence            488999999999999999888888999999999999999999999999999999999999999999999996   89999


Q ss_pred             EEecCCC-CCEEEcC-cccEEEcccCCcccCcEEEEEEEEecCC---ceeEEEEEEEEee
Q psy4697          80 WLSNDYG-ERFSISR-QGDISLMQCLDYETEDSYRFTVYATDTL---MTTSATVNISVVN  134 (383)
Q Consensus        80 si~~~~~-~~F~Id~-tG~I~~~~~LD~E~~~~y~~~V~A~D~~---~~s~~tV~I~V~D  134 (383)
                      +|.+... .+|.|+. +|.|++.+.||||....|.+.|.|+|.+   +++.++++|.|.|
T Consensus       140 ~l~~~~~~~~f~i~~~~G~i~~~~~ld~e~~~~~~l~v~a~D~~~~~~~~~~~i~i~v~d  199 (199)
T cd00031         140 SILSGNDKELFSIDPNTGIITLAKPLDREEKSSYELTVVATDGGGPPLSSTATVTVTVLD  199 (199)
T ss_pred             EEeCCCCCCEEEEeCCceEEEeCCccCCccCceEEEEEEEEECCCCCceeEEEEEEEEEC
Confidence            9998654 7999997 9999999999999999999999999974   7888889988875

>PF00028 Cadherin: Cadherin domain; InterPro: IPR002126 Cadherins are a family of adhesion molecules that mediate Ca2+-dependent cell-cell adhesion in all solid tissues of the organism which modulate a wide variety of processes including cell polarisation and migration [, ,]

Probab=99.63  E-value=7.1e-15  Score=116.52  Aligned_cols=84  Identities=40%  Similarity=0.539  Sum_probs=77.6

Q ss_pred             EEEEEECCCCCCcEEEEEEeEeCCC---CeeEEEEecCC-CCCEEEcC-cccEEEcccCCcccCcEEEEEEEEecC-C--
Q psy4697          50 YSVSALENLPVNYVLLTVTTNKPRD---LRVKYWLSNDY-GERFSISR-QGDISLMQCLDYETEDSYRFTVYATDT-L--  121 (383)
Q Consensus        50 y~~~V~En~~~gt~v~~v~A~D~D~---~~v~Ysi~~~~-~~~F~Id~-tG~I~~~~~LD~E~~~~y~~~V~A~D~-~--  121 (383)
                      |+++|+||.++|+.++++.|.|+|.   +.+.|+|.+.. ..+|.|++ +|.|++.+.||||..+.|.|.|.|+|. +  
T Consensus         1 Y~~~v~E~~~~g~~v~~v~a~D~D~~~n~~i~y~i~~~~~~~~F~I~~~tg~i~~~~~LD~E~~~~y~l~v~a~D~~~~~   80 (93)
T PF00028_consen    1 YSFSVPENAPPGTVVGQVTATDPDSGPNSQITYSILGGNPDGLFSIDPNTGEISLKKPLDRETQSSYQLTVRATDSGGSP   80 (93)
T ss_dssp             EEEEEETTGSTSSEEEEEEEEESSTSTTSSEEEEEEETTSTTSEEEETTTTEEEESSSSCTTTTSEEEEEEEEEETTTSS
T ss_pred             CEEEEECCCCCCCEEEEEEEEeCCCCCCceEEEEEecCcccCceEEeeeeeccccceecCcccCCEEEEEEEEEECCCCC
Confidence            8999999999999999999999994   89999999854 78999997 999999999999999999999999998 4  


Q ss_pred             -ceeEEEEEEEEe
Q psy4697         122 -MTTSATVNISVV  133 (383)
Q Consensus       122 -~~s~~tV~I~V~  133 (383)
                       ++++++|.|+|+
T Consensus        81 ~~~~~~~V~I~V~   93 (93)
T PF00028_consen   81 PLSSTATVTINVL   93 (93)
T ss_dssp             EEEEEEEEEEEEE
T ss_pred             CCEEEEEEEEEEC
Confidence             778888888874

Cadherin-mediated cell-cell junctions are formed as a result of interaction between extracellular domains of identical cadherins, which are located on the membranes of the neighbouring cells. The stability of these adhesive junctions is ensured by binding of the intracellular cadherin domain with the actin cytoskeleton. There are a number of different isoforms distributed in a tissue-specific manner in a wide variety of organisms. Cells containing different cadherins tend to segregate in vitro, while those that contain the same cadherins tend to preferentially aggregate together. This observation is linked to the finding that cadherin expression causes morphological changes involving the positional segregation of cells into layers, suggesting they may play an important role in the sorting of different cell types during morphogenesis, histogenesis and regeneration. They may also be involved in the regulation of tight and gap junctions, and in the control of intercellular spacing. Cadherins are evolutionary related to the desmogleins which are component of intercellular desmosome junctions involved in the interaction of plaque proteins. Structurally, cadherins comprise a number of domains: classically, these include a signal sequence; a propeptide of around 130 residues; a single transmembrane domain and five tandemly repeated extracellular cadherin domains, 4 of which are cadherin repeats, and the fifth contains 4 conserved cysteines and a N-terminal cytoplasmic domain []. However, proteins are designated as members of the broadly defined cadherin family if they have one or more cadherin repeats. A cadherin repeat is an independently folding sequence of approximately 110 amino acids that contains motifs with the conserved sequences DRE, DXNDNAPXF, and DXD. Crystal structures have revealed that multiple cadherin domains form Ca2+-dependent rod-like structures with a conserved Ca2+-binding pocket at the domain-domain interface. Cadherins depend on calcium for their function: calcium ions bind to specific residues in each cadherin repeat to ensure its proper folding, to confer rigidity upon the extracellular domain and is essential for cadherin adhesive function and for protection against protease digestion.; GO: 0005509 calcium ion binding, 0007156 homophilic cell adhesion, 0016020 membrane; PDB: 2A4E_A 2A4C_B 2O72_A 2QVI_A 1NCJ_A 3Q2W_A 3Q2N_A 3LNH_B 3LNI_A 3Q2L_A ....

>KOG1834|consensus

Probab=99.60  E-value=4.2e-14  Score=141.33  Aligned_cols=196  Identities=22%  Similarity=0.265  Sum_probs=151.9

Q ss_pred             EEEeeCCCCCCeeecCcEEEEEECCCCCCcEEEEEEeEeCCC-----Ce-eEEEEecCCCCCEEE---cC---cccEEEc
Q psy4697          33 VSKAGTSLRELQFSKNEYSVSALENLPVNYVLLTVTTNKPRD-----LR-VKYWLSNDYGERFSI---SR---QGDISLM  100 (383)
Q Consensus        33 V~V~DvNdn~P~F~~~~y~~~V~En~~~gt~v~~v~A~D~D~-----~~-v~Ysi~~~~~~~F~I---d~---tG~I~~~  100 (383)
                      .....+|-+.|. -...|+.-|.||.-.-...--+.|-|.|.     |+ .-|.|-+.+ -.|.+   |.   .|.|+++
T Consensus        21 ~~aarankhkpw-ie~ey~gvV~Endntvll~Ppl~aLdkdaplr~ageiC~fklhgq~-vPFdavVvdK~TGegvlRaK   98 (952)
T KOG1834|consen   21 HHAARANKHKPW-IEEEYHGVVTENDNTVLLDPPLAALDKDAPLRYAGEICGFKLHGQP-VPFDAVVVDKYTGEGVLRAK   98 (952)
T ss_pred             cccccccccCcc-cccceeEEEEeCCceEEeCCCeeeecCCCCcccccccceeEecCCC-CCceEEEEeccCCceEEeec
Confidence            334466777774 56789999999964323333567778774     33 346665532 24654   53   5679999


Q ss_pred             ccCCcccCcEEEEEEEEecCC---------ceeEEEEEEEEeecCCCCCcccCCceeEEEeccCCCCCCCCceEEEEEee
Q psy4697         101 QCLDYETEDSYRFTVYATDTL---------MTTSATVNISVVNVNDWDPRFRYPQYELFLPHIPLADLTPGSVIGKVEAA  171 (383)
Q Consensus       101 ~~LD~E~~~~y~~~V~A~D~~---------~~s~~tV~I~V~DvNDn~P~f~~~~~~~~v~~~~~e~~~~g~~v~~v~A~  171 (383)
                      .+||.|.++.|+|+|+|-|-|         .+..++|+|+|.|+|+++|+|..+.|.+.|.    |. +.-..|+++.|.
T Consensus        99 ~~lDCelqkeytf~iQAydCg~gpdgtn~kKShkatvhIrVkDvNe~AP~f~ep~Yka~V~----EG-K~yd~il~veAi  173 (952)
T KOG1834|consen   99 EPLDCELQKEYTFTIQAYDCGNGPDGTNTKKSHKATVHIRVKDVNEFAPVFKEPWYKAHVT----EG-KVYDSILRVEAI  173 (952)
T ss_pred             CcccccccccceEEEEEEecCCCCCccccccccceEEEEEeccccccCchhcccceeeEEe----cc-eeeeeeEEEEee
Confidence            999999999999999999832         4668999999999999999999999999998    54 345678899999


Q ss_pred             eCCCCC----eEEEEEeCCCCCCEEEcCCCcEEEec-cCCCCcceEEEEEEEeeCCCCCceeEEEEEEEE
Q psy4697         172 DGDKGD----RVTLSLRGPYEKMFSINDSGHISIVD-LSALNTSTIQLVVVATDTGNPPRQASVPAIMHF  236 (383)
Q Consensus       172 D~D~g~----~i~ysi~~~~~~~F~i~~tG~i~l~~-~~~~~~~~y~L~V~a~D~g~p~~sst~tv~I~v  236 (383)
                      |.|-+.    -..|.|. +.+-.|.||..|.|+... +.+-....|.|+|+|.|.|......-+.|+|.|
T Consensus       174 D~DCspq~sqIC~YEI~-t~d~PFaIdn~G~irnTekLny~ke~~Y~ltVtAyDCg~kraa~d~lV~v~V  242 (952)
T KOG1834|consen  174 DKDCSPQYSQICEYEIT-TPDVPFAIDNDGNIRNTEKLNYTKEHQYKLTVTAYDCGKKRAASDSLVTVHV  242 (952)
T ss_pred             cCCCCCcccceeEEEec-CCCCceEEcCCCccccccccccccceeEEEEEEEEecccccccCcceEEEEe
Confidence            999764    4789997 466689999999998655 455567899999999999987766667888888

>PF00028 Cadherin: Cadherin domain; InterPro: IPR002126 Cadherins are a family of adhesion molecules that mediate Ca2+-dependent cell-cell adhesion in all solid tissues of the organism which modulate a wide variety of processes including cell polarisation and migration [, ,]

Probab=99.47  E-value=1.3e-12  Score=103.51  Aligned_cols=87  Identities=36%  Similarity=0.630  Sum_probs=78.3

Q ss_pred             eeEEEeccCCCCCCCCceEEEEEeeeCCCCC--eEEEEEeC-CCCCCEEEcC-CCcEEEec-cCCCCcceEEEEEEEeeC
Q psy4697         147 YELFLPHIPLADLTPGSVIGKVEAADGDKGD--RVTLSLRG-PYEKMFSIND-SGHISIVD-LSALNTSTIQLVVVATDT  221 (383)
Q Consensus       147 ~~~~v~~~~~e~~~~g~~v~~v~A~D~D~g~--~i~ysi~~-~~~~~F~i~~-tG~i~l~~-~~~~~~~~y~L~V~a~D~  221 (383)
                      |.+.++    |+.++|+.++++.|.|+|.+.  .+.|+|.+ +..++|.|++ +|.|.+.+ ++++....|.|.|.|+|.
T Consensus         1 Y~~~v~----E~~~~g~~v~~v~a~D~D~~~n~~i~y~i~~~~~~~~F~I~~~tg~i~~~~~LD~E~~~~y~l~v~a~D~   76 (93)
T PF00028_consen    1 YSFSVP----ENAPPGTVVGQVTATDPDSGPNSQITYSILGGNPDGLFSIDPNTGEISLKKPLDRETQSSYQLTVRATDS   76 (93)
T ss_dssp             EEEEEE----TTGSTSSEEEEEEEEESSTSTTSSEEEEEEETTSTTSEEEETTTTEEEESSSSCTTTTSEEEEEEEEEET
T ss_pred             CEEEEE----CCCCCCCEEEEEEEEeCCCCCCceEEEEEecCcccCceEEeeeeeccccceecCcccCCEEEEEEEEEEC
Confidence            678899    999999999999999999765  69999984 4478999998 99999876 488889999999999999


Q ss_pred             -CCCCceeEEEEEEEEe
Q psy4697         222 -GNPPRQASVPAIMHFP  237 (383)
Q Consensus       222 -g~p~~sst~tv~I~v~  237 (383)
                       |.|+++++++|+|+|+
T Consensus        77 ~~~~~~~~~~~V~I~V~   93 (93)
T PF00028_consen   77 GGSPPLSSTATVTINVL   93 (93)
T ss_dssp             TTSSEEEEEEEEEEEEE
T ss_pred             CCCCCCEEEEEEEEEEC
Confidence             8999999999999984

Cadherin-mediated cell-cell junctions are formed as a result of interaction between extracellular domains of identical cadherins, which are located on the membranes of the neighbouring cells. The stability of these adhesive junctions is ensured by binding of the intracellular cadherin domain with the actin cytoskeleton. There are a number of different isoforms distributed in a tissue-specific manner in a wide variety of organisms. Cells containing different cadherins tend to segregate in vitro, while those that contain the same cadherins tend to preferentially aggregate together. This observation is linked to the finding that cadherin expression causes morphological changes involving the positional segregation of cells into layers, suggesting they may play an important role in the sorting of different cell types during morphogenesis, histogenesis and regeneration. They may also be involved in the regulation of tight and gap junctions, and in the control of intercellular spacing. Cadherins are evolutionary related to the desmogleins which are component of intercellular desmosome junctions involved in the interaction of plaque proteins. Structurally, cadherins comprise a number of domains: classically, these include a signal sequence; a propeptide of around 130 residues; a single transmembrane domain and five tandemly repeated extracellular cadherin domains, 4 of which are cadherin repeats, and the fifth contains 4 conserved cysteines and a N-terminal cytoplasmic domain []. However, proteins are designated as members of the broadly defined cadherin family if they have one or more cadherin repeats. A cadherin repeat is an independently folding sequence of approximately 110 amino acids that contains motifs with the conserved sequences DRE, DXNDNAPXF, and DXD. Crystal structures have revealed that multiple cadherin domains form Ca2+-dependent rod-like structures with a conserved Ca2+-binding pocket at the domain-domain interface. Cadherins depend on calcium for their function: calcium ions bind to specific residues in each cadherin repeat to ensure its proper folding, to confer rigidity upon the extracellular domain and is essential for cadherin adhesive function and for protection against protease digestion.; GO: 0005509 calcium ion binding, 0007156 homophilic cell adhesion, 0016020 membrane; PDB: 2A4E_A 2A4C_B 2O72_A 2QVI_A 1NCJ_A 3Q2W_A 3Q2N_A 3LNH_B 3LNI_A 3Q2L_A ....

>smart00112 CA Cadherin repeats

Probab=99.43  E-value=7.7e-13  Score=101.49  Aligned_cols=70  Identities=34%  Similarity=0.478  Sum_probs=62.9

Q ss_pred             eCCC---CeeEEEEecCCC-CCEEEcC-cccEEEcccCCcccCcEEEEEEEEecCC---ceeEEEEEEEEeecCCCCC
Q psy4697          71 KPRD---LRVKYWLSNDYG-ERFSISR-QGDISLMQCLDYETEDSYRFTVYATDTL---MTTSATVNISVVNVNDWDP  140 (383)
Q Consensus        71 D~D~---~~v~Ysi~~~~~-~~F~Id~-tG~I~~~~~LD~E~~~~y~~~V~A~D~~---~~s~~tV~I~V~DvNDn~P  140 (383)
                      |+|.   +.++|+|..... .+|.|++ +|.|++.++||||....|.|.|.|.|.+   +++.++|.|+|.|+|||+|
T Consensus         2 D~D~g~n~~i~Y~i~~~~~~~~F~i~~~tg~i~~~~~LD~e~~~~y~l~v~a~D~~~~~~~~~~~v~I~V~D~Nd~~P   79 (79)
T smart00112        2 DADSGENGKVTYSILSGNEDGLFSIDPETGEITTTKPLDREEQPEYTLTVEATDGGGPPLSSTATVTVTVLDVNDNAP   79 (79)
T ss_pred             CCCCCcCcEEEEEEecCCCCCEEEEeCCccEEEeCCccCeeCCCeEEEEEEEEECCCCCcccEEEEEEEEEECCCCCC
Confidence            5554   789999987554 8999996 9999999999999999999999999976   7899999999999999998

Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion. Cadherin domains occur as repeats in the extracellular regions which are thought to mediate cell-cell contact when bound to calcium.

>KOG1834|consensus

Probab=99.35  E-value=1.2e-11  Score=124.02  Aligned_cols=128  Identities=20%  Similarity=0.239  Sum_probs=108.2

Q ss_pred             CcCCCCeEEEEEEEEECCCCC------ceEEEEEEEEEeeCCCCCCeeecCcEEEEEECCCCCCcEEEEEEeEeCCC---
Q psy4697           4 EDDFLQPITLVVRAIQYDNQD------RYALATLIVSKAGTSLRELQFSKNEYSVSALENLPVNYVLLTVTTNKPRD---   74 (383)
Q Consensus         4 DrE~~~~y~l~V~a~D~g~~~------~~s~~~v~V~V~DvNdn~P~F~~~~y~~~V~En~~~gt~v~~v~A~D~D~---   74 (383)
                      |=|.+..|+++|+|.|-|..+      .+.-++|.|+|.|+|+.+|+|..+.|.+.|.|.- .-..|++|.|.|.|=   
T Consensus       102 DCelqkeytf~iQAydCg~gpdgtn~kKShkatvhIrVkDvNe~AP~f~ep~Yka~V~EGK-~yd~il~veAiD~DCspq  180 (952)
T KOG1834|consen  102 DCELQKEYTFTIQAYDCGNGPDGTNTKKSHKATVHIRVKDVNEFAPVFKEPWYKAHVTEGK-VYDSILRVEAIDKDCSPQ  180 (952)
T ss_pred             cccccccceEEEEEEecCCCCCccccccccceEEEEEeccccccCchhcccceeeEEecce-eeeeeEEEEeecCCCCCc
Confidence            568899999999999977654      4556889999999999999999999999999984 467899999999993   


Q ss_pred             --CeeEEEEecCCCCCEEEcCcccEEEcccCCcccCcEEEEEEEEecCC---ceeEEEEEEEEe
Q psy4697          75 --LRVKYWLSNDYGERFSISRQGDISLMQCLDYETEDSYRFTVYATDTL---MTTSATVNISVV  133 (383)
Q Consensus        75 --~~v~Ysi~~~~~~~F~Id~tG~I~~~~~LD~E~~~~y~~~V~A~D~~---~~s~~tV~I~V~  133 (383)
                        .-..|.|.. +.-.|.||+.|.|+.+.+|.|.....|.|+|.|-|-|   ..+.+.|+|.|.
T Consensus       181 ~sqIC~YEI~t-~d~PFaIdn~G~irnTekLny~ke~~Y~ltVtAyDCg~kraa~d~lV~v~Vk  243 (952)
T KOG1834|consen  181 YSQICEYEITT-PDVPFAIDNDGNIRNTEKLNYTKEHQYKLTVTAYDCGKKRAASDSLVTVHVK  243 (952)
T ss_pred             ccceeEEEecC-CCCceEEcCCCccccccccccccceeEEEEEEEEecccccccCcceEEEEec
Confidence              446788886 5557999999999999999999999999999999965   223356676664

>smart00112 CA Cadherin repeats

Probab=98.94  E-value=5.6e-09  Score=79.86  Aligned_cols=74  Identities=30%  Similarity=0.471  Sum_probs=61.2

Q ss_pred             eeCCCCC--eEEEEEeCCCC-CCEEEcC-CCcEEEec-cCCCCcceEEEEEEEeeCCCCCceeEEEEEEEEeCCcccCcc
Q psy4697         171 ADGDKGD--RVTLSLRGPYE-KMFSIND-SGHISIVD-LSALNTSTIQLVVVATDTGNPPRQASVPAIMHFPEAIVQQAS  245 (383)
Q Consensus       171 ~D~D~g~--~i~ysi~~~~~-~~F~i~~-tG~i~l~~-~~~~~~~~y~L~V~a~D~g~p~~sst~tv~I~v~~~~~~~~p  245 (383)
                      +|+|.|.  .+.|+|.++.. .+|.|++ +|.+.+.+ ++++....|.|.|.|+|.|.|+++++++|.|.| .+.|+++|
T Consensus         1 ~D~D~g~n~~i~Y~i~~~~~~~~F~i~~~tg~i~~~~~LD~e~~~~y~l~v~a~D~~~~~~~~~~~v~I~V-~D~Nd~~P   79 (79)
T smart00112        1 TDADSGENGKVTYSILSGNEDGLFSIDPETGEITTTKPLDREEQPEYTLTVEATDGGGPPLSSTATVTVTV-LDVNDNAP   79 (79)
T ss_pred             CCCCCCcCcEEEEEEecCCCCCEEEEeCCccEEEeCCccCeeCCCeEEEEEEEEECCCCCcccEEEEEEEE-EECCCCCC
Confidence            4788874  69999985443 8999997 89887664 577778999999999999999999999999999 66666554

Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion. Cadherin domains occur as repeats in the extracellular regions which are thought to mediate cell-cell contact when bound to calcium.

>PF08758 Cadherin_pro: Cadherin prodomain like; InterPro: IPR014868 Cadherins are a group of proteins that mediate calcium dependent cell-cell adhesion

Probab=97.80  E-value=0.00016  Score=56.77  Aligned_cols=86  Identities=23%  Similarity=0.256  Sum_probs=46.8

Q ss_pred             CCCeeecCcEEEEEECCCCCCcEEEEEEeEeCCC-CeeEEEEecCCCCCEEEcCcccEEEcccCCcccCcEEEEEEEEec
Q psy4697          41 RELQFSKNEYSVSALENLPVNYVLLTVTTNKPRD-LRVKYWLSNDYGERFSISRQGDISLMQCLDYETEDSYRFTVYATD  119 (383)
Q Consensus        41 n~P~F~~~~y~~~V~En~~~gt~v~~v~A~D~D~-~~v~Ysi~~~~~~~F~Id~tG~I~~~~~LD~E~~~~y~~~V~A~D  119 (383)
                      +-|-|.+..|.+.|+.+...|..|++|.-.|-.. ..+.|.-. ++  .|.|.++|.|++++++.....+ -.|.|.|.|
T Consensus         2 C~pGF~~~~~~~~Vp~~l~~g~~lg~V~f~dC~~~~~~~~~ss-Dp--dF~V~~DGsVy~~r~v~l~~~~-~~F~V~a~D   77 (90)
T PF08758_consen    2 CRPGFSQKKYTFEVPSNLEAGQPLGKVNFEDCTGRRRVIFESS-DP--DFRVLEDGSVYAKRPVQLSSEQ-RSFTVHAWD   77 (90)
T ss_dssp             ---B--S-EEEE----SS-SS--EEE---B--SS---EEEE----S--EEEEETTTEEEEES--S-SSS--EEEEEEEEE
T ss_pred             CcCCcccceEEEEcCchhhCCcEEEEEEeccCCCCCceEEecC-CC--CEEEcCCCeEEEeeeEecCCCc-eEEEEEEEC
Confidence            4588999999999999999999999999988865 56888643 22  6999999999999999886543 479999999


Q ss_pred             CCceeEEEEEE
Q psy4697         120 TLMTTSATVNI  130 (383)
Q Consensus       120 ~~~~s~~tV~I  130 (383)
                      .......++.|
T Consensus        78 ~~~~~~~~v~V   88 (90)
T PF08758_consen   78 SQTQEQKEVKV   88 (90)
T ss_dssp             TTTTEEEEEEE
T ss_pred             CCCCeEEEEEE
Confidence            75333344443

They are activated through cleavage of a prosequence in the late Golgi. This protein corresponds to the folded region of the prosequence, and is termed the prodomain. The prodomain shows structural resemblance to the cadherin domain, but lacks all the features known to be important for cadherin-cadherin interactions []. ; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1OP4_A.

>PF08758 Cadherin_pro: Cadherin prodomain like; InterPro: IPR014868 Cadherins are a group of proteins that mediate calcium dependent cell-cell adhesion

Probab=97.40  E-value=0.0013  Score=51.69  Aligned_cols=80  Identities=23%  Similarity=0.353  Sum_probs=45.5

Q ss_pred             CCcccCCceeEEEeccCCCCCCCCceEEEEEeeeCCCCCeEEEEEeCCCCCCEEEcCCCcEEEeccCCCCcceEEEEEEE
Q psy4697         139 DPRFRYPQYELFLPHIPLADLTPGSVIGKVEAADGDKGDRVTLSLRGPYEKMFSINDSGHISIVDLSALNTSTIQLVVVA  218 (383)
Q Consensus       139 ~P~f~~~~~~~~v~~~~~e~~~~g~~v~~v~A~D~D~g~~i~ysi~~~~~~~F~i~~tG~i~l~~~~~~~~~~y~L~V~a  218 (383)
                      .|=|....|.+.|+    .+...|+.|++|.-.|-.....+.|.-.   +..|.|.++|.+++.+.-.+....-.+.|.|
T Consensus         3 ~pGF~~~~~~~~Vp----~~l~~g~~lg~V~f~dC~~~~~~~~~ss---DpdF~V~~DGsVy~~r~v~l~~~~~~F~V~a   75 (90)
T PF08758_consen    3 RPGFSQKKYTFEVP----SNLEAGQPLGKVNFEDCTGRRRVIFESS---DPDFRVLEDGSVYAKRPVQLSSEQRSFTVHA   75 (90)
T ss_dssp             --B--S-EEEE--------SS-SS--EEE---B--SS---EEEE------SEEEEETTTEEEEES--S-SSS-EEEEEEE
T ss_pred             cCCcccceEEEEcC----chhhCCcEEEEEEeccCCCCCceEEecC---CCCEEEcCCCeEEEeeeEecCCCceEEEEEE
Confidence            36788888999999    8899999999999999965567888754   3389999999999888756666667899999


Q ss_pred             eeCCCCC
Q psy4697         219 TDTGNPP  225 (383)
Q Consensus       219 ~D~g~p~  225 (383)
                      +|.....
T Consensus        76 ~D~~~~~   82 (90)
T PF08758_consen   76 WDSQTQE   82 (90)
T ss_dssp             EETTTTE
T ss_pred             ECCCCCe
Confidence            9987644

They are activated through cleavage of a prosequence in the late Golgi. This protein corresponds to the folded region of the prosequence, and is termed the prodomain. The prodomain shows structural resemblance to the cadherin domain, but lacks all the features known to be important for cadherin-cadherin interactions []. ; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1OP4_A.

>PF08266 Cadherin_2: Cadherin-like; InterPro: IPR013164 Cadherins are a family of adhesion molecules that mediate Ca2+-dependent cell-cell adhesion in all solid tissues of the organism which modulate a wide variety of processes including cell polarisation and migration [, ,]

Probab=97.36  E-value=0.00059  Score=52.90  Aligned_cols=57  Identities=16%  Similarity=0.253  Sum_probs=37.9

Q ss_pred             EEEEEECCCCCCcEEEEEEeEeCCC-----CeeEEEEec-CCCCCEEEcC-cccEEEcccCCccc
Q psy4697          50 YSVSALENLPVNYVLLTVTTNKPRD-----LRVKYWLSN-DYGERFSISR-QGDISLMQCLDYET  107 (383)
Q Consensus        50 y~~~V~En~~~gt~v~~v~A~D~D~-----~~v~Ysi~~-~~~~~F~Id~-tG~I~~~~~LD~E~  107 (383)
                      ..++|+|..++|+.||.+ |.|...     ....|.+.. ....+|.++. +|.|++...+|||.
T Consensus         3 i~YsV~EE~~~Gt~IGni-a~dL~l~~~~l~~~~~ri~s~~~~~~~~v~~~tG~L~v~~rIDRE~   66 (84)
T PF08266_consen    3 IRYSVPEEMPPGTVIGNI-AKDLGLDPQSLSSRNFRIVSEGNSQYFRVNEKTGDLFVSERIDREE   66 (84)
T ss_dssp             EEEEEESS--TT-EEEEC-CCCCT--HHHHCCTTBEEE-SSSS-SEEE-TTTSEEEESS--SCCC
T ss_pred             eEEEeecCCCCCCEEEEh-HHhhCCCcccccccceEEeecCCcceeEecCCceeEEeCCccCHHH
Confidence            357899999999999999 445432     334566555 4567999996 99999999999998

Cadherin-mediated cell-cell junctions are formed as a result of interaction between extracellular domains of identical cadherins, which are located on the membranes of the neighbouring cells. The stability of these adhesive junctions is ensured by binding of the intracellular cadherin domain with the actin cytoskeleton. There are a number of different isoforms distributed in a tissue-specific manner in a wide variety of organisms. Cells containing different cadherins tend to segregate in vitro, while those that contain the same cadherins tend to preferentially aggregate together. This observation is linked to the finding that cadherin expression causes morphological changes involving the positional segregation of cells into layers, suggesting they may play an important role in the sorting of different cell types during morphogenesis, histogenesis and regeneration. They may also be involved in the regulation of tight and gap junctions, and in the control of intercellular spacing. Cadherins are evolutionary related to the desmogleins which are component of intercellular desmosome junctions involved in the interaction of plaque proteins. Structurally, cadherins comprise a number of domains: classically, these include a signal sequence; a propeptide of around 130 residues; a single transmembrane domain and five tandemly repeated extracellular cadherin domains, 4 of which are cadherin repeats, and the fifth contains 4 conserved cysteines and a N-terminal cytoplasmic domain []. However, proteins are designated as members of the broadly defined cadherin family if they have one or more cadherin repeats. A cadherin repeat is an independently folding sequence of approximately 110 amino acids that contains motifs with the conserved sequences DRE, DXNDNAPXF, and DXD. Crystal structures have revealed that multiple cadherin domains form Ca2+-dependent rod-like structures with a conserved Ca2+-binding pocket at the domain-domain interface. Cadherins depend on calcium for their function: calcium ions bind to specific residues in each cadherin repeat to ensure its proper folding, to confer rigidity upon the extracellular domain and is essential for cadherin adhesive function and for protection against protease digestion. This entry represents a cadherin domain that is usually found at the N terminus of cadherin proteins.; PDB: 1WUZ_A 1WYJ_A.

>TIGR01965 VCBS_repeat VCBS repeat

Probab=95.86  E-value=0.063  Score=42.84  Aligned_cols=77  Identities=23%  Similarity=0.185  Sum_probs=51.7

Q ss_pred             EEEEeEeCCC-CeeEEEEec--CCCCCEEEcCcccEEEc--------ccCCcccCcEEEEEEEEecCCceeEEEEEEEEe
Q psy4697          65 LTVTTNKPRD-LRVKYWLSN--DYGERFSISRQGDISLM--------QCLDYETEDSYRFTVYATDTLMTTSATVNISVV  133 (383)
Q Consensus        65 ~~v~A~D~D~-~~v~Ysi~~--~~~~~F~Id~tG~I~~~--------~~LD~E~~~~y~~~V~A~D~~~~s~~tV~I~V~  133 (383)
                      |++.++|+|. ....++...  ...+.|.|+.+|.....        +.|.--+...-.|+|.+.|+   ...+|.|.|.
T Consensus         2 G~Lt~sD~D~gd~~~~s~~~~~g~yGtlti~~~G~wtYtl~n~~~avq~L~~Ge~~tdsFtvtv~DG---tt~~vtItI~   78 (99)
T TIGR01965         2 GQLTISDADAGQAHFIAQTDAAGQYGTFSIDADGQWTYQADNSQTAVQALKAGETLTDTFTVTSADG---TSQTVTITIT   78 (99)
T ss_pred             CceEEeCCCCCCceEEecccccCCcEEEEECCCCcEEEEeCCCcHHHHhhcCCCEEEEEEEEEEeCC---CeEEEEEEEE
Confidence            4678888887 345555533  23345888777765432        23333344567888889997   3889999999


Q ss_pred             ecCCCCCcccCC
Q psy4697         134 NVNDWDPRFRYP  145 (383)
Q Consensus       134 DvNDn~P~f~~~  145 (383)
                      ..|| +|++...
T Consensus        79 GtND-apvi~~~   89 (99)
T TIGR01965        79 GAND-AAVIGGA   89 (99)
T ss_pred             ccCC-CCEEecc
Confidence            9999 8877543

This domain of about 100 residues is found multiple (up to 35) copies in long proteins from several species of Vibrio, Colwellia, Bradyrhizobium, and Shewanella (hence the name VCBS) and in smaller copy numbers in proteins from several other bacteria. The large protein size and repeat copy numbers, species distribution, and suggested activities of several member proteins suggests a role for this domain in adhesion.

>smart00736 CADG Dystroglycan-type cadherin-like domains

Probab=95.75  E-value=0.13  Score=40.82  Aligned_cols=67  Identities=25%  Similarity=0.251  Sum_probs=51.3

Q ss_pred             eEeCCCCeeEEEEec----CCCCCEEEcC-cccEEEcccCCcccCcEEEEEEEEecCC-ceeEEEEEEEEeecCC
Q psy4697          69 TNKPRDLRVKYWLSN----DYGERFSISR-QGDISLMQCLDYETEDSYRFTVYATDTL-MTTSATVNISVVNVND  137 (383)
Q Consensus        69 A~D~D~~~v~Ysi~~----~~~~~F~Id~-tG~I~~~~~LD~E~~~~y~~~V~A~D~~-~~s~~tV~I~V~DvND  137 (383)
                      ..|+|...++|++..    .-..|...|+ ++.++= .+.+.+ ...|.+.|.|+|+. .++...+.|.|.+.||
T Consensus        24 F~d~d~~~lty~~~~~~~~~lP~Wl~fd~~~~~~~G-tP~~~~-~g~~~i~v~a~D~~g~~~~~~f~i~V~~~~~   96 (97)
T smart00736       24 FTDADGDTLTYSATLSDGSALPSWLSFDSDTGTLSG-TPTNSD-VGSLSLKVTATDSSGASASDTFTITVVNTND   96 (97)
T ss_pred             eECCCCCeEEEEEEeCCCCCCCCeEEEeCCCCEEEE-ECCCCC-CcEEEEEEEEEECCCCEEEEEEEEEEeCCCC
Confidence            467777889999864    2256899986 777665 344433 46799999999975 8888899999999987

Cadherin-homologous domains present in metazoan dystroglycans and alpha/epsilon sarcoglycans, yeast Axl2p and in a very large protein from magnetotactic bacteria. Likely to bind calcium ions.

>PF15102 TMEM154: TMEM154 protein family

Probab=94.47  E-value=0.053  Score=46.00  Aligned_cols=34  Identities=26%  Similarity=0.444  Sum_probs=16.6

Q ss_pred             eeeehhhHHHHHHHHHHHHHHhhheeecCCCCCC
Q psy4697         254 STVLIILGVVLIVLGFVIILLILYIHKNKHTKNN  287 (383)
Q Consensus       254 ~~li~~l~~i~~lL~l~~~~l~~~~~r~~~~~~~  287 (383)
                      +++++++..++++||++++++.++++||+|.|..
T Consensus        57 fiLmIlIP~VLLvlLLl~vV~lv~~~kRkr~K~~   90 (146)
T PF15102_consen   57 FILMILIPLVLLVLLLLSVVCLVIYYKRKRTKQE   90 (146)
T ss_pred             eEEEEeHHHHHHHHHHHHHHHheeEEeecccCCC
Confidence            3556666655554443333334444555544443

>KOG0196|consensus

Probab=94.23  E-value=2.3  Score=45.71  Aligned_cols=110  Identities=18%  Similarity=0.140  Sum_probs=55.5

Q ss_pred             CCcccCcEEEEEEEEecCC------ceeEEEEEEEEeecCCCCCcccCCceeEEEeccCCCCCCCCceEEEEEeeeCCCC
Q psy4697         103 LDYETEDSYRFTVYATDTL------MTTSATVNISVVNVNDWDPRFRYPQYELFLPHIPLADLTPGSVIGKVEAADGDKG  176 (383)
Q Consensus       103 LD~E~~~~y~~~V~A~D~~------~~s~~tV~I~V~DvNDn~P~f~~~~~~~~v~~~~~e~~~~g~~v~~v~A~D~D~g  176 (383)
                      -|.+....|+|.|+|.++-      ....+.|.|..   |.-+|.-   ...+.+.     ......+-..-.--|++.|
T Consensus       403 ~~L~ah~~YTFeV~AvNgVS~lsp~~~~~a~vnItt---~qa~ps~---V~~~r~~-----~~~~~sitlsW~~p~~png  471 (996)
T KOG0196|consen  403 SDLLAHTNYTFEVEAVNGVSDLSPFPRQFASVNITT---NQAAPSP---VSVLRQV-----SRTSDSITLSWSEPDQPNG  471 (996)
T ss_pred             eccccccccEEEEEEeecccccCCCCCcceeEEeec---cccCCCc---cceEEEe-----eeccCceEEecCCCCCCCC
Confidence            3556677899999999862      22344555544   3333321   1112111     1111222122233344445


Q ss_pred             CeEEEEEe----C-CCCCCEEEcC-CCcEEEeccCCCCcceEEEEEEEeeCCCCC
Q psy4697         177 DRVTLSLR----G-PYEKMFSIND-SGHISIVDLSALNTSTIQLVVVATDTGNPP  225 (383)
Q Consensus       177 ~~i~ysi~----~-~~~~~F~i~~-tG~i~l~~~~~~~~~~y~L~V~a~D~g~p~  225 (383)
                      ..+.|.+.    . +...+..+.. .-...+..+  .....|-+.|.|.+..+..
T Consensus       472 ~ildYEvky~ek~~~e~~~~~~~t~~~~~ti~gL--~p~t~YvfqVRarT~aG~G  524 (996)
T KOG0196|consen  472 VILDYEVKYYEKDEDERSYSTLKTKTTTATITGL--KPGTVYVFQVRARTAAGYG  524 (996)
T ss_pred             cceeEEEEEeeccccccceeEEecccceEEeecc--CCCcEEEEEEEEecccCCC
Confidence            55677764    1 3344444543 323334443  3357899999999875543

>smart00736 CADG Dystroglycan-type cadherin-like domains

Probab=94.21  E-value=0.77  Score=36.27  Aligned_cols=65  Identities=25%  Similarity=0.286  Sum_probs=46.3

Q ss_pred             EeeeCCCCCeEEEEEeC----CCCCCEEEcC-CCcEEEeccCCCCcceEEEEEEEeeCCCCCceeEEEEEEEEe
Q psy4697         169 EAADGDKGDRVTLSLRG----PYEKMFSIND-SGHISIVDLSALNTSTIQLVVVATDTGNPPRQASVPAIMHFP  237 (383)
Q Consensus       169 ~A~D~D~g~~i~ysi~~----~~~~~F~i~~-tG~i~l~~~~~~~~~~y~L~V~a~D~g~p~~sst~tv~I~v~  237 (383)
                      ...|.| +..++|++..    ....|...++ ++.+.-. +...+.+.|.+.|.|+|..+  .++...+.|.|.
T Consensus        23 tF~d~d-~~~lty~~~~~~~~~lP~Wl~fd~~~~~~~Gt-P~~~~~g~~~i~v~a~D~~g--~~~~~~f~i~V~   92 (97)
T smart00736       23 TFTDAD-GDTLTYSATLSDGSALPSWLSFDSDTGTLSGT-PTNSDVGSLSLKVTATDSSG--ASASDTFTITVV   92 (97)
T ss_pred             ceECCC-CCeEEEEEEeCCCCCCCCeEEEeCCCCEEEEE-CCCCCCcEEEEEEEEEECCC--CEEEEEEEEEEe
Confidence            356888 7789999862    2345777886 7777543 33344678999999999876  567777888773

Cadherin-homologous domains present in metazoan dystroglycans and alpha/epsilon sarcoglycans, yeast Axl2p and in a very large protein from magnetotactic bacteria. Likely to bind calcium ions.

>TIGR01965 VCBS_repeat VCBS repeat

Probab=92.25  E-value=1.2  Score=35.63  Aligned_cols=72  Identities=22%  Similarity=0.264  Sum_probs=46.6

Q ss_pred             EEEEeeeCCCCCeEEEEEe--CCCCCCEEEcCCCcEEEec-c-----CCC---CcceEEEEEEEeeCCCCCceeEEEEEE
Q psy4697         166 GKVEAADGDKGDRVTLSLR--GPYEKMFSINDSGHISIVD-L-----SAL---NTSTIQLVVVATDTGNPPRQASVPAIM  234 (383)
Q Consensus       166 ~~v~A~D~D~g~~i~ysi~--~~~~~~F~i~~tG~i~l~~-~-----~~~---~~~~y~L~V~a~D~g~p~~sst~tv~I  234 (383)
                      +++.++|+|.|+...++..  ....+.|.|+.+|.-.-.. .     ..+   +...-.++|.+.|+      .+.+|.|
T Consensus         2 G~Lt~sD~D~gd~~~~s~~~~~g~yGtlti~~~G~wtYtl~n~~~avq~L~~Ge~~tdsFtvtv~DG------tt~~vtI   75 (99)
T TIGR01965         2 GQLTISDADAGQAHFIAQTDAAGQYGTFSIDADGQWTYQADNSQTAVQALKAGETLTDTFTVTSADG------TSQTVTI   75 (99)
T ss_pred             CceEEeCCCCCCceEEecccccCCcEEEEECCCCcEEEEeCCCcHHHHhhcCCCEEEEEEEEEEeCC------CeEEEEE
Confidence            3578999999988888874  2345678998887543211 1     112   23345788889995      2677788


Q ss_pred             EEeCCcccCc
Q psy4697         235 HFPEAIVQQA  244 (383)
Q Consensus       235 ~v~~~~~~~~  244 (383)
                      +| .+.|+.+
T Consensus        76 tI-~GtNDap   84 (99)
T TIGR01965        76 TI-TGANDAA   84 (99)
T ss_pred             EE-EccCCCC
Confidence            77 5555543

This domain of about 100 residues is found multiple (up to 35) copies in long proteins from several species of Vibrio, Colwellia, Bradyrhizobium, and Shewanella (hence the name VCBS) and in smaller copy numbers in proteins from several other bacteria. The large protein size and repeat copy numbers, species distribution, and suggested activities of several member proteins suggests a role for this domain in adhesion.

>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains

Probab=91.71  E-value=0.13  Score=46.39  Aligned_cols=37  Identities=11%  Similarity=0.265  Sum_probs=23.8

Q ss_pred             CCCceeeehhhHHHHHHHHHHHHHHhhheeecCCCCC
Q psy4697         250 SGTSSTVLIILGVVLIVLGFVIILLILYIHKNKHTKN  286 (383)
Q Consensus       250 ~~~~~~li~~l~~i~~lL~l~~~~l~~~~~r~~~~~~  286 (383)
                      ..+..++++++|+++.+.|+|++..++++||++..+.
T Consensus        34 ~d~~~I~iaiVAG~~tVILVI~i~v~vR~CRq~~~k~   70 (221)
T PF08374_consen   34 KDYVKIMIAIVAGIMTVILVIFIVVLVRYCRQSPHKK   70 (221)
T ss_pred             ccceeeeeeeecchhhhHHHHHHHHHHHHHhhccccc
Confidence            3566777888888877666666655565577554443

They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].

>KOG3597|consensus

Probab=90.13  E-value=13  Score=37.78  Aligned_cols=144  Identities=14%  Similarity=0.130  Sum_probs=85.0

Q ss_pred             EEEEEEEEEeeCCCCCCeeecCcEEEEEECCCCCCcEEEEEEeEeCCC--CeeEEEEecCCCC---------------CE
Q psy4697          27 ALATLIVSKAGTSLRELQFSKNEYSVSALENLPVNYVLLTVTTNKPRD--LRVKYWLSNDYGE---------------RF   89 (383)
Q Consensus        27 s~~~v~V~V~DvNdn~P~F~~~~y~~~V~En~~~gt~v~~v~A~D~D~--~~v~Ysi~~~~~~---------------~F   89 (383)
                      .+....|.|..+||+|..+-...+.+-+.|+...-.....+.+.|+|.  ..+.|++....+.               -|
T Consensus        24 ~~~~~~i~v~pvndpp~~~~~~~~~l~~~~~~~k~l~~~~l~~~d~d~~~~~l~f~v~~t~~~~~~~~~~~~~g~~~~~F  103 (442)
T KOG3597|consen   24 QTDVLRIHVNPVNDPPSLIFPSGSLLVILEGGQKVLDPELLTAADPDSAPLPLEFQVLGTSSVPLPVLKFDVPGAPATEF  103 (442)
T ss_pred             EEeeecccccccCCCcceeecccceEEeecCCceeccceEeeccCCCCCccceEEEEccCCCCCCccceeeccCCcccce
Confidence            344567889999999888888888888898866555556788899987  7788888773322               23


Q ss_pred             EEc--CcccEEEcccCCccc--CcEEEEEEEEecCCceeEEEEEEEEeecCCCCCcccCC-ceeEEEeccCCCCCCCCce
Q psy4697          90 SIS--RQGDISLMQCLDYET--EDSYRFTVYATDTLMTTSATVNISVVNVNDWDPRFRYP-QYELFLPHIPLADLTPGSV  164 (383)
Q Consensus        90 ~Id--~tG~I~~~~~LD~E~--~~~y~~~V~A~D~~~~s~~tV~I~V~DvNDn~P~f~~~-~~~~~v~~~~~e~~~~g~~  164 (383)
                      +-.  ..|.+.    +++..  .....++..++|+-..+. .   .+.-.-...|.+... ...+.+.      ......
T Consensus       104 s~~~v~~g~~~----yvh~g~el~~~~~~~~~SDg~~~S~-~---~i~~~~~~~~~~~~~~~~gL~v~------~gS~~~  169 (442)
T KOG3597|consen  104 SYEEVEDGSLS----YVHSGTELRESELQLRVSDGLLVSE-R---AILKVEATGPAPHLARNTGLKVL------QGSTAP  169 (442)
T ss_pred             EehHhhcCcee----EEecCcccccceEEEEeecceEeee-e---EEecccCCCcceeeecccceEEc------cCcccc
Confidence            222  133332    23333  567788888999875555 1   111122223332221 1122222      112222


Q ss_pred             E--EEEEeeeCCCC-C-eEEEEEe
Q psy4697         165 I--GKVEAADGDKG-D-RVTLSLR  184 (383)
Q Consensus       165 v--~~v~A~D~D~g-~-~i~ysi~  184 (383)
                      |  ..+.+.|.|++ + .+.|.|.
T Consensus       170 IT~~~L~ved~d~~~d~~v~~~i~  193 (442)
T KOG3597|consen  170 ITPSNLSVEDNDSSPDDEVRYDIT  193 (442)
T ss_pred             ccHhHceeecCCCCCCcEEEEEec
Confidence            3  24788888854 3 6888885

>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane

Probab=89.62  E-value=0.17  Score=41.91  Aligned_cols=19  Identities=32%  Similarity=0.660  Sum_probs=12.1

Q ss_pred             eeeehhhHHHHHHHHHHHH
Q psy4697         254 STVLIILGVVLIVLGFVII  272 (383)
Q Consensus       254 ~~li~~l~~i~~lL~l~~~  272 (383)
                      .++.|++|+++++++++++
T Consensus        65 ~i~~Ii~gv~aGvIg~Ill   83 (122)
T PF01102_consen   65 AIIGIIFGVMAGVIGIILL   83 (122)
T ss_dssp             CHHHHHHHHHHHHHHHHHH
T ss_pred             ceeehhHHHHHHHHHHHHH
Confidence            4556777777777665443

Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.

>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]

Probab=88.96  E-value=0.18  Score=36.59  Aligned_cols=13  Identities=8%  Similarity=0.107  Sum_probs=1.6

Q ss_pred             eeecCCCCCCCCC
Q psy4697         278 IHKNKHTKNNGPP  290 (383)
Q Consensus       278 ~~r~~~~~~~~~~  290 (383)
                      ..|.+||+..+|.
T Consensus        33 iyR~rkkdEGSY~   45 (64)
T PF01034_consen   33 IYRMRKKDEGSYD   45 (64)
T ss_dssp             ----S------SS
T ss_pred             HHHHHhcCCCCcc
Confidence            4555556655554

Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.

>PF08266 Cadherin_2: Cadherin-like; InterPro: IPR013164 Cadherins are a family of adhesion molecules that mediate Ca2+-dependent cell-cell adhesion in all solid tissues of the organism which modulate a wide variety of processes including cell polarisation and migration [, ,]

Probab=88.55  E-value=1.2  Score=34.43  Aligned_cols=55  Identities=20%  Similarity=0.420  Sum_probs=32.8

Q ss_pred             eEEEeccCCCCCCCCceEEEEEeeeCCCCC----eEEEEEe-CCCCCCEEEcC-CCcEEEecc-CCC
Q psy4697         148 ELFLPHIPLADLTPGSVIGKVEAADGDKGD----RVTLSLR-GPYEKMFSIND-SGHISIVDL-SAL  207 (383)
Q Consensus       148 ~~~v~~~~~e~~~~g~~v~~v~A~D~D~g~----~i~ysi~-~~~~~~F~i~~-tG~i~l~~~-~~~  207 (383)
                      ..+|+    |..++|+.|+.| |.|.-...    ...|.+. .....+|.++. +|.+++... +++
T Consensus         4 ~YsV~----EE~~~Gt~IGni-a~dL~l~~~~l~~~~~ri~s~~~~~~~~v~~~tG~L~v~~rIDRE   65 (84)
T PF08266_consen    4 RYSVP----EEMPPGTVIGNI-AKDLGLDPQSLSSRNFRIVSEGNSQYFRVNEKTGDLFVSERIDRE   65 (84)
T ss_dssp             EEEEE----SS--TT-EEEEC-CCCCT--HHHHCCTTBEEE-SSSS-SEEE-TTTSEEEESS--SCC
T ss_pred             EEEee----cCCCCCCEEEEh-HHhhCCCcccccccceEEeecCCcceeEecCCceeEEeCCccCHH
Confidence            46788    899999999998 55553211    2345544 34567999997 999998754 444

Cadherin-mediated cell-cell junctions are formed as a result of interaction between extracellular domains of identical cadherins, which are located on the membranes of the neighbouring cells. The stability of these adhesive junctions is ensured by binding of the intracellular cadherin domain with the actin cytoskeleton. There are a number of different isoforms distributed in a tissue-specific manner in a wide variety of organisms. Cells containing different cadherins tend to segregate in vitro, while those that contain the same cadherins tend to preferentially aggregate together. This observation is linked to the finding that cadherin expression causes morphological changes involving the positional segregation of cells into layers, suggesting they may play an important role in the sorting of different cell types during morphogenesis, histogenesis and regeneration. They may also be involved in the regulation of tight and gap junctions, and in the control of intercellular spacing. Cadherins are evolutionary related to the desmogleins which are component of intercellular desmosome junctions involved in the interaction of plaque proteins. Structurally, cadherins comprise a number of domains: classically, these include a signal sequence; a propeptide of around 130 residues; a single transmembrane domain and five tandemly repeated extracellular cadherin domains, 4 of which are cadherin repeats, and the fifth contains 4 conserved cysteines and a N-terminal cytoplasmic domain []. However, proteins are designated as members of the broadly defined cadherin family if they have one or more cadherin repeats. A cadherin repeat is an independently folding sequence of approximately 110 amino acids that contains motifs with the conserved sequences DRE, DXNDNAPXF, and DXD. Crystal structures have revealed that multiple cadherin domains form Ca2+-dependent rod-like structures with a conserved Ca2+-binding pocket at the domain-domain interface. Cadherins depend on calcium for their function: calcium ions bind to specific residues in each cadherin repeat to ensure its proper folding, to confer rigidity upon the extracellular domain and is essential for cadherin adhesive function and for protection against protease digestion. This entry represents a cadherin domain that is usually found at the N terminus of cadherin proteins.; PDB: 1WUZ_A 1WYJ_A.

>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators

Probab=88.09  E-value=4.5  Score=28.98  Aligned_cols=56  Identities=18%  Similarity=0.193  Sum_probs=33.1

Q ss_pred             eEEEEEeCCCCCCEEEcCCC-cEEEeccCCCCcceEEEEEEEeeCCCCCceeEEEEEEEE
Q psy4697         178 RVTLSLRGPYEKMFSINDSG-HISIVDLSALNTSTIQLVVVATDTGNPPRQASVPAIMHF  236 (383)
Q Consensus       178 ~i~ysi~~~~~~~F~i~~tG-~i~l~~~~~~~~~~y~L~V~a~D~g~p~~sst~tv~I~v  236 (383)
                      ...|.|.|....+..+.... .+....   +..+.|.|.|.|.|..........++.|.|
T Consensus         9 ~Y~Y~l~g~d~~W~~~~~~~~~~~~~~---L~~G~Y~l~V~a~~~~~~~~~~~~~l~i~I   65 (66)
T PF07495_consen    9 RYRYRLEGFDDEWITLGSYSNSISYTN---LPPGKYTLEVRAKDNNGKWSSDEKSLTITI   65 (66)
T ss_dssp             EEEEEEETTESSEEEESSTS-EEEEES-----SEEEEEEEEEEETTS-B-SS-EEEEEEE
T ss_pred             EEEEEEECCCCeEEECCCCcEEEEEEe---CCCEEEEEEEEEECCCCCcCcccEEEEEEE
Confidence            45666776555455555544 554433   567999999999997665444335666655

However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.

>TIGR00845 caca sodium/calcium exchanger 1

Probab=86.52  E-value=59  Score=36.23  Aligned_cols=138  Identities=15%  Similarity=0.227  Sum_probs=71.6

Q ss_pred             eCCCCCCeeecCcEEEEEECCCCCCcEEEEEEeEeCCC---CeeEEEEecC---CCCCEEEcCcccEEEc----------
Q psy4697          37 GTSLRELQFSKNEYSVSALENLPVNYVLLTVTTNKPRD---LRVKYWLSND---YGERFSISRQGDISLM----------  100 (383)
Q Consensus        37 DvNdn~P~F~~~~y~~~V~En~~~gt~v~~v~A~D~D~---~~v~Ysi~~~---~~~~F~Id~tG~I~~~----------  100 (383)
                      +.||.++.|....-+..|.||.  |+.-.+|.=...|.   -.|.|+..+.   .+.-|.- .+|.|.-.          
T Consensus       394 ~~dd~~s~i~Fe~~~Y~V~En~--GtV~VtV~R~GGdl~~tVsVdY~T~DGTA~AG~DY~~-~sGTLtF~PGEt~KtItV  470 (928)
T TIGR00845       394 EENDPVSKIFFEPGHYTCLENC--GTVALTVVRRGGDLTNTVYVDYRTEDGTANAGSDYEF-TEGTLVFKPGETQKEFRI  470 (928)
T ss_pred             cccCCcceEEecCCeEEEeecC--cEEEEEEEEccCCCCceEEEEEEccCCccCCCCCccc-cCceEEECCCceEEEEEE
Confidence            3577777776666677888985  77666665443332   5578887651   1111111 13333221          


Q ss_pred             ccC---CcccCcEEEEEEEEecCC----------------ceeEEEEEEEEeecCCCCCcccCCceeEEEeccCCCCCCC
Q psy4697         101 QCL---DYETEDSYRFTVYATDTL----------------MTTSATVNISVVNVNDWDPRFRYPQYELFLPHIPLADLTP  161 (383)
Q Consensus       101 ~~L---D~E~~~~y~~~V~A~D~~----------------~~s~~tV~I~V~DvNDn~P~f~~~~~~~~v~~~~~e~~~~  161 (383)
                      ..+   -+|....|.+.+.--..+                +....+.+|+|.| ||++|.|....-...+.    |+.  
T Consensus       471 ~IIDDdi~E~DE~F~V~LSNp~~g~~~G~~~~~~~~~~A~Lg~ps~ATVTIlD-DD~aGIfsFe~~~~sV~----Es~--  543 (928)
T TIGR00845       471 GIIDDDIFEEDEHFYVRLSNLRVGSEDGILEANHVSAVAQLASPNTATVTILD-DDHAGIFTFEEDVFHVS----ESI--  543 (928)
T ss_pred             EEccCCCCCCCceEEEEEeCCCCCCcccccccccccccceecCCceEEEEEec-CcccCcccccCceEEEE----cCC--
Confidence            112   234455555555332111                1223456677777 77899877665566777    654  


Q ss_pred             CceEEEEEeeeCCCCC-eEEEEEe
Q psy4697         162 GSVIGKVEAADGDKGD-RVTLSLR  184 (383)
Q Consensus       162 g~~v~~v~A~D~D~g~-~i~ysi~  184 (383)
                      |..-.+|.-+-.-.|. .+.|.-.
T Consensus       544 G~vtvtV~RtsGa~G~VtV~Y~T~  567 (928)
T TIGR00845       544 GIMEVKVLRTSGARGTVIVPYRTV  567 (928)
T ss_pred             CEEEEEEEEcCCCCeeEEEEEEee
Confidence            4443343333222233 5667654

This model is specific for the eukaryotic sodium ion/calcium ion exchangers of the Caca family

>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []

Probab=85.78  E-value=0.76  Score=29.69  Aligned_cols=9  Identities=22%  Similarity=0.516  Sum_probs=3.6

Q ss_pred             ehhhHHHHH
Q psy4697         257 LIILGVVLI  265 (383)
Q Consensus       257 i~~l~~i~~  265 (383)
                      ++++++++.
T Consensus         6 IaIIv~V~v   14 (38)
T PF02439_consen    6 IAIIVAVVV   14 (38)
T ss_pred             hhHHHHHHH
Confidence            334444443

This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.

>PF12877 DUF3827: Domain of unknown function (DUF3827); InterPro: IPR024606 The function of the proteins in this entry is not currently known, but one of the human proteins (Q9HCM3 from SWISSPROT) has been implicated in pilocytic astrocytomas [, , ]

Probab=81.02  E-value=2  Score=44.92  Aligned_cols=35  Identities=14%  Similarity=0.198  Sum_probs=19.7

Q ss_pred             ceeeehhhHHHHHHHHHHHHHHhhheeecCCCCCC
Q psy4697         253 SSTVLIILGVVLIVLGFVIILLILYIHKNKHTKNN  287 (383)
Q Consensus       253 ~~~li~~l~~i~~lL~l~~~~l~~~~~r~~~~~~~  287 (383)
                      ..+||+++.+-++++++|+++|++.+||++|-+..
T Consensus       268 NlWII~gVlvPv~vV~~Iiiil~~~LCRk~K~eFq  302 (684)
T PF12877_consen  268 NLWIIAGVLVPVLVVLLIIIILYWKLCRKNKLEFQ  302 (684)
T ss_pred             CeEEEehHhHHHHHHHHHHHHHHHHHhcccccCCC
Confidence            34444444444444444555567778888877643

In the majority of cases of pilocytic astrocytomas a tandem duplication produces an in-frame fusion of the gene encoding this protein and the BRAF oncogene. The resulting fusion protein has constitutive BRAF kinase activity and is capable of transforming cells.

>PF05345 He_PIG: Putative Ig domain; InterPro: IPR008009 This alignment represents the conserved core region of a ~90 residue repeat found in several haemagglutinins and other cell surface proteins

Probab=80.46  E-value=7.4  Score=26.69  Aligned_cols=37  Identities=27%  Similarity=0.298  Sum_probs=27.2

Q ss_pred             CCCCCEEEcC-CCcEEEeccCCCCcceEEEEEEEeeCC
Q psy4697         186 PYEKMFSIND-SGHISIVDLSALNTSTIQLVVVATDTG  222 (383)
Q Consensus       186 ~~~~~F~i~~-tG~i~l~~~~~~~~~~y~L~V~a~D~g  222 (383)
                      ....+..+|+ +|.|.-........+.|.+.|.|+|..
T Consensus        11 ~LP~gLs~d~~tG~isGtp~~~~~~G~y~~~vtatd~~   48 (49)
T PF05345_consen   11 GLPSGLSLDPSTGTISGTPTSSVQPGTYTFTVTATDGS   48 (49)
T ss_pred             CCCCcEEEeCCCCEEEeecCCCccccEEEEEEEEEcCC
Confidence            3455788987 999975544333457999999999964

Sequence similarities to Hyalin (IPR003410 from INTERPRO) and the PKD domain (IPR000601 from INTERPRO) suggest an Ig-like fold so this family may be similar in function to the (IPR003791 from INTERPRO) and (IPR003790 from INTERPRO) protein families.

>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []

Probab=80.43  E-value=1.9  Score=27.91  Aligned_cols=25  Identities=4%  Similarity=0.191  Sum_probs=14.7

Q ss_pred             CceeeehhhHHHHHHHHHHHHHHhh
Q psy4697         252 TSSTVLIILGVVLIVLGFVIILLIL  276 (383)
Q Consensus       252 ~~~~li~~l~~i~~lL~l~~~~l~~  276 (383)
                      .+..++.++.+.+.++.+.++..+.
T Consensus         4 s~IaIIv~V~vg~~iiii~~~~YaC   28 (38)
T PF02439_consen    4 STIAIIVAVVVGMAIIIICMFYYAC   28 (38)
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHH
Confidence            3456666666666666665554333

This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.

>KOG1094|consensus

Probab=80.41  E-value=2.9  Score=43.65  Aligned_cols=23  Identities=17%  Similarity=0.573  Sum_probs=12.6

Q ss_pred             CCceeeehhhHHHHHHHHHHHHH
Q psy4697         251 GTSSTVLIILGVVLIVLGFVIIL  273 (383)
Q Consensus       251 ~~~~~li~~l~~i~~lL~l~~~~  273 (383)
                      +.+.++++++.+|.+++++++++
T Consensus       388 ~~t~~~~~~f~~if~iva~ii~~  410 (807)
T KOG1094|consen  388 SPTAILIIIFVAIFLIVALIIAL  410 (807)
T ss_pred             CCceehHHHHHHHHHHHHHHHHH
Confidence            34455666666666555554443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	383
3ubh_A	419	Crystal Structure Of Drosophila N-Cadherin Ec1-4 Le		5e-05

>pdb|3UBH|A Chain A, Crystal Structure Of Drosophila N-Cadherin Ec1-4 Length = 419

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 52/200 (26%), Positives = 84/200 (42%), Gaps = 18/200 (9%)
Query: 41  RELQFSKNEYSVSALENLPVNYVLLTVTTNKPRDLRVKYWLS--NDYGERFSIS-RQGDI 97
           R  QF    Y     EN   +  ++++      D  ++Y L         F+I    G +
Sbjct: 215 RAPQFYMPSYEAEIPENQKKDSDIISIKAKSFADREIRYTLKAQGQGAGTFNIGPTSGIV 274
Query: 98  SLMQCLDYE---TEDSYRFTVYATDTL--MTTSATVNISVVNVNDWDPRFRYPQYELFLP 152
            L + LD+E       Y   V AT+     +TS  + I V +VND  P+F  P Y+    
Sbjct: 275 KLAKELDFEDLRQPHVYSLIVTATEDSGGFSTSVDLTIRVTDVNDNAPKFELPDYQA--- 331
Query: 153 HIPLADLTPGSVIGKVEAADGDKGDRVTLSLRGPYEKMFSINDSGHISIVDLSAL----N 208
           H    D+  G+ I +V+A D D G    +      +  F+++ +G   IV+   L    N
Sbjct: 332 HNVDEDIPLGTSILRVKAMDSDSGSNAEIEYLVS-DDHFAVDSNG--IIVNNKQLDADNN 388
Query: 209 TSTIQLVVVATDTGNPPRQA 228
            +  + +V A D G PP+  
Sbjct: 389 NAYYEFIVTAKDKGEPPKSG 408

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	383
3mvs_A	210	Cadherin-23, otocadherin; adhesion, extracellular	3e-29
3mvs_A	210	Cadherin-23, otocadherin; adhesion, extracellular	3e-13
1q55_A	880	EP-cadherin, C-cadherin; trans interaction, desmos	1e-26
1q55_A	880	EP-cadherin, C-cadherin; trans interaction, desmos	2e-26
1q55_A	880	EP-cadherin, C-cadherin; trans interaction, desmos	6e-20
1q55_A	880	EP-cadherin, C-cadherin; trans interaction, desmos	5e-19
1q55_A	880	EP-cadherin, C-cadherin; trans interaction, desmos	3e-12
1q55_A	880	EP-cadherin, C-cadherin; trans interaction, desmos	3e-08
1l3w_A	546	EP-cadherin, C-cadherin; cell adhesion, calcium bi	2e-26
1l3w_A	546	EP-cadherin, C-cadherin; cell adhesion, calcium bi	3e-21
1l3w_A	546	EP-cadherin, C-cadherin; cell adhesion, calcium bi	1e-20
1l3w_A	546	EP-cadherin, C-cadherin; cell adhesion, calcium bi	5e-18
3q2v_A	550	Cadherin-1; cell adhesion, calcium binding; HET: M	3e-26
3q2v_A	550	Cadherin-1; cell adhesion, calcium binding; HET: M	1e-20
3q2v_A	550	Cadherin-1; cell adhesion, calcium binding; HET: M	2e-19
3q2v_A	550	Cadherin-1; cell adhesion, calcium binding; HET: M	2e-18
3q2v_A	550	Cadherin-1; cell adhesion, calcium binding; HET: M	3e-04
3q2w_A	559	Cadherin-2; cell adhesion, calcium binding; HET: M	8e-25
3q2w_A	559	Cadherin-2; cell adhesion, calcium binding; HET: M	3e-20
3q2w_A	559	Cadherin-2; cell adhesion, calcium binding; HET: M	1e-18
3q2w_A	559	Cadherin-2; cell adhesion, calcium binding; HET: M	2e-16
3qrb_A	213	Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus mu	2e-24
3qrb_A	213	Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus mu	8e-09
3ubh_A	419	Neural-cadherin; cell adhesion; 2.70A {Drosophila	2e-23
3ubh_A	419	Neural-cadherin; cell adhesion; 2.70A {Drosophila	5e-19
3ubh_A	419	Neural-cadherin; cell adhesion; 2.70A {Drosophila	1e-12
3ppe_A	203	Vascular endothelial cadherin; extracellular cadhe	3e-22
3ppe_A	203	Vascular endothelial cadherin; extracellular cadhe	9e-11
3ubf_A	316	Neural-cadherin; cell adhesion; 2.50A {Drosophila	3e-22
3ubf_A	316	Neural-cadherin; cell adhesion; 2.50A {Drosophila	2e-15
3ubf_A	316	Neural-cadherin; cell adhesion; 2.50A {Drosophila	1e-13
2x2u_A	246	Proto-oncogene tyrosine-protein kinase receptor RE	1e-21
2x2u_A	246	Proto-oncogene tyrosine-protein kinase receptor RE	4e-15
2qvi_A	215	Cadherin-2; beta barrel, strand SWAP, domain SWAP,	2e-21
2qvi_A	215	Cadherin-2; beta barrel, strand SWAP, domain SWAP,	2e-09
2qvi_A	215	Cadherin-2; beta barrel, strand SWAP, domain SWAP,	4e-04
3lnd_A	207	CDH6 protein, cadherin 6; cell adhesion, cell memb	1e-20
3lnd_A	207	CDH6 protein, cadherin 6; cell adhesion, cell memb	2e-09
2a4e_A	215	Cadherin-11; dimer, calcium binding, cell adhesion	1e-20
2a4e_A	215	Cadherin-11; dimer, calcium binding, cell adhesion	2e-12
2a62_A	322	Cadherin-8; extracellular domain, homodimer, calci	2e-20
2a62_A	322	Cadherin-8; extracellular domain, homodimer, calci	1e-16
3k5r_A	218	Cadherin 13; mouse, structural protein; 2.00A {Mus	1e-19
3k5r_A	218	Cadherin 13; mouse, structural protein; 2.00A {Mus	6e-07
2yqg_A	123	Desmoglein-2, HDGC; cadherin, structural genomics,	9e-15
2yqg_A	123	Desmoglein-2, HDGC; cadherin, structural genomics,	2e-04
2yst_A	119	Protocadherin-7; BH-PCDH, beta-sandwich, structura	1e-14
2yst_A	119	Protocadherin-7; BH-PCDH, beta-sandwich, structura	2e-06
1ncg_A	110	N-cadherin; cell adhesion protein; 2.10A {Mus musc	4e-13
1ncg_A	110	N-cadherin; cell adhesion protein; 2.10A {Mus musc	2e-04
2ee0_A	114	Protocadherin-9; Ca domain, structural genomics, N	6e-13
2ee0_A	114	Protocadherin-9; Ca domain, structural genomics, N	1e-05
2omz_B	105	Epithelial-cadherin; leucine-rich-repeat, nvasion	2e-11
1zxk_A	98	Cadherin-8; strand dimer, cell adhesion; 2.00A {Mu	3e-09
1zvn_A	99	Mn-cadherin; strand dimer, ----; 2.16A {Gallus gal	6e-09
3k6d_A	99	T-cadherin; cell adhesion; 1.80A {Xenopus laevis}	8e-08
3k6d_A	99	T-cadherin; cell adhesion; 1.80A {Xenopus laevis}	2e-04
3k6i_A	99	T-cadherin; cell adhesion, alternative splicing, c	2e-07
3k6i_A	99	T-cadherin; cell adhesion, alternative splicing, c	5e-04
3k6f_A	100	T-cadherin; cell adhesion, calcium, cell membrane,	6e-07
3k6f_A	100	T-cadherin; cell adhesion, calcium, cell membrane,	2e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04

>3mvs_A Cadherin-23, otocadherin; adhesion, extracellular domain, cell adhesion; 1.10A {Mus musculus} PDB: 2wcp_A 2whv_A 2wd0_A 2wbx_A Length = 210

 Score =  111 bits (280), Expect = 3e-29
 Identities = 47/196 (23%), Positives = 78/196 (39%), Gaps = 23/196 (11%)

Query: 44  QFSKNEY--SVSALENLPVNYVLLTVTTNKPRDL---RVKYWL-SNDYGERFSISRQ-GD 96
            F+ + +   +   E+ PV   +  +     RD+    + + +   +    F++    G 
Sbjct: 7   FFTNHFFDTYLLISEDTPVGSSVTQLLA---RDMDNDPLVFGVSGEEASRFFAVEPDTGV 63

Query: 97  ISLMQCLDYETEDSYRFTVYATDTLMTTSATVNISVVNVNDWDPRFRYPQYELFLPHIPL 156
           + L Q LD ET+  +      +D     +  VNI V +VND  P F    Y + +P    
Sbjct: 64  VWLRQPLDRETKSEFTVEFSVSDHQGVITRKVNIQVGDVNDNAPTFHNQPYSVRIPE--- 120

Query: 157 ADLTPGSVIGKVEAADGDKGD--RVTLSLRGPYEKMFSIN-DSGHISIVDLSAL---NTS 210
            +   G+ I  V A D D G    V  S + P    F+I+   G ++++    L    T 
Sbjct: 121 -NTPVGTPIFIVNATDPDLGAGGSVLYSFQPPSP-FFAIDSARGIVTVI--QELDYEVTQ 176

Query: 211 TIQLVVVATDTGNPPR 226
             QL V ATD      
Sbjct: 177 AYQLTVNATDQDKTRP 192

>3mvs_A Cadherin-23, otocadherin; adhesion, extracellular domain, cell adhesion; 1.10A {Mus musculus} PDB: 2wcp_A 2whv_A 2wd0_A 2wbx_A Length = 210

 Score = 67.2 bits (165), Expect = 3e-13
 Identities = 32/103 (31%), Positives = 46/103 (44%), Gaps = 11/103 (10%)

Query: 44  QFSKNEYSVSALENLPVNYVLLTVTTNKPRDL----RVKYWLSNDYGERFSISRQ-GDIS 98
            F    YSV   EN PV   +  V    P DL     V Y         F+I    G ++
Sbjct: 108 TFHNQPYSVRIPENTPVGTPIFIVNATDP-DLGAGGSVLYSFQPP-SPFFAIDSARGIVT 165

Query: 99  LMQCLDYETEDSYRFTVYATD----TLMTTSATVNISVVNVND 137
           ++Q LDYE   +Y+ TV ATD      ++T A + I + ++ D
Sbjct: 166 VIQELDYEVTQAYQLTVNATDQDKTRPLSTLANLAIIITDMQD 208

>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction, adhesion, structural protein; HET: NAG NDG; 30.00A {Mus musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A* Length = 880

 Score =  111 bits (278), Expect = 1e-26
 Identities = 46/280 (16%), Positives = 102/280 (36%), Gaps = 32/280 (11%)

Query: 44  QFSKNEYSVSALENLPVNYVLLTVTTNKPRDL------RVKYWLSNDYGERFSI-SRQGD 96
            F      V   E+L     ++++     +D       ++ Y++ ND     ++    G 
Sbjct: 486 FFVPAVSRVDVSEDLSRGEKIISLV---AQDPDKQQIQKLSYFIGNDPARWLTVNKDNGI 542

Query: 97  ISLMQCLDYETE----DSYRFTVYATDT---LMTTSATVNISVVNVNDWDPRFRYPQYEL 149
           ++    LD E+E    ++Y   +  TD    + T + T+ + V++VND  P      + +
Sbjct: 543 VTGNGNLDRESEYVKNNTYTVIMLVTDDGVSVGTGTGTLILHVLDVNDNGPVPSPRVFTM 602

Query: 150 FLPHIPLADLTPGSVIGKVEAADGDK---GDRVTLSLRGPYEKMFSIND--SGHISIV-D 203
                             +  +D D         +SL    +  +       G   ++  
Sbjct: 603 ---------CDQNPEPQVLTISDADIPPNTYPYKVSLSHGSDLTWKAELDSKGTSMLLSP 653

Query: 204 LSALNTSTIQLVVVATDTGNPPRQASVPAIMHFPEAIVQQASSKLNSGTSSTVLIILGVV 263
              L      + V+ +D  N P+   V A +   E    +   KL  G    +++++   
Sbjct: 654 TQQLKKGDYSIYVLLSDAQNNPQLTVVNATVCSCEGKAIKCQEKLVGGFDLPIILVILGS 713

Query: 264 LIVLGFVIILLILYIHKNKHTKNNGPPGSSHSKNDSFLSN 303
           ++ L  + +LL+L++ + K  K         ++++ F   
Sbjct: 714 VLALLILFLLLLLFLKRKKVVKEPLLLPEDDTRDNIFYYG 753

>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction, adhesion, structural protein; HET: NAG NDG; 30.00A {Mus musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A* Length = 880

 Score =  110 bits (276), Expect = 2e-26
 Identities = 41/213 (19%), Positives = 86/213 (40%), Gaps = 32/213 (15%)

Query: 44  QFSKNEYSVSALENLPVNYVLLTVTTNKPRDL------RVKYWLSNDYGERFSI-----S 92
            F    Y+    EN  + + +  ++     D+      +  Y +  + G  F+I     S
Sbjct: 375 IFDPKTYTALVPEN-EIGFEVQRLSVTD-LDMPGTPAWQAVYKIRVNEGGFFNITTDPES 432

Query: 93  RQGDISLMQCLDYETEDSYRFTVYATDT------LMTTSATVNISVVNVNDWDPRFRYPQ 146
            QG ++  + LD+E    Y   +   +       L T++ATV ++V +VN+  P F    
Sbjct: 433 NQGILTTAKGLDFELRKQYVLQITVENAEPFSVPLPTSTATVTVTVEDVNE-APFFVPAV 491

Query: 147 YELFLPHIPLADLTPGSVIGKVEAADGDKGD--RVTLSLRGPYEKMFSIN-DSGHISIV- 202
             + +      DL+ G  I  + A D DK    +++  +     +  ++N D+G ++   
Sbjct: 492 SRVDVS----EDLSRGEKIISLVAQDPDKQQIQKLSYFIGNDPARWLTVNKDNGIVTGNG 547

Query: 203 ----DLSALNTSTIQLVVVATDTGNPPRQASVP 231
               +   +  +T  ++++ TD G      +  
Sbjct: 548 NLDRESEYVKNNTYTVIMLVTDDGVSVGTGTGT 580

>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction, adhesion, structural protein; HET: NAG NDG; 30.00A {Mus musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A* Length = 880

 Score = 90.7 bits (225), Expect = 6e-20
 Identities = 50/255 (19%), Positives = 95/255 (37%), Gaps = 35/255 (13%)

Query: 5   DDFLQPITLVVRAIQYDNQDRYALAT-----LIVSKAGTSLR--ELQFSKNEYSVSALEN 57
                   + V + ++ + +     +     L   +  T L+  +  +      VS  E 
Sbjct: 110 RGIKHSTNIAVASKRHRSGEEAHSRSSKLPVLTFPETHTGLKRKKRDWVIPPIKVSENER 169

Query: 58  LPVNYVLLTVTTNKPRDLRVKYWLS-----NDYGERFSISRQ-GDISLMQCLDYETEDSY 111
            P    L+ + +NK R  +V Y ++     N     F I  + G + + + LD E  D Y
Sbjct: 170 GPFPKRLVQIKSNKDRFNKVYYSITGQGADNPPQGVFRIEWETGWMLVTRPLDREEYDKY 229

Query: 112 RFTVYATDT---LMTTSATVNISVVNVNDWDPRFRYPQYELFLPHIPLADLTPGSVIGKV 168
             + +A       +     + I+V++ ND  P+F    +   +       + PG+ +  V
Sbjct: 230 VLSSHAVSENGSPVEEPMEITINVIDQNDNRPKFTQDVFRGSVRE----GVQPGTQVMAV 285

Query: 169 EAADGDKGD-----RVTLSL-----RGPYEKMFSIN-DSGHISIVDLSALN---TSTIQL 214
            A D D         ++ S+       P   +F+IN ++G IS++  + L+        L
Sbjct: 286 SATDEDDNIDSLNGVLSYSILKQDPEEPIPNLFTINRETGVISLI-GTGLDREKFPEYTL 344

Query: 215 VVVATDTGNPPRQAS 229
            V ATD         
Sbjct: 345 TVQATDLEGAGLSVE 359

>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction, adhesion, structural protein; HET: NAG NDG; 30.00A {Mus musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A* Length = 880

 Score = 88.0 bits (218), Expect = 5e-19
 Identities = 39/222 (17%), Positives = 73/222 (32%), Gaps = 44/222 (19%)

Query: 44  QFSKNEYSVSALENLPVNYVLLTVTTNKPRDL---------RVKYWL-----SNDYGERF 89
           +F+++ +  S  E +     ++ V+     D           + Y +            F
Sbjct: 262 KFTQDVFRGSVREGVQPGTQVMAVSAT---DEDDNIDSLNGVLSYSILKQDPEEPIPNLF 318

Query: 90  SISRQ-GDISLM-QCLDYETEDSYRFTVYATDTL---MTTSATVNISVVNVNDWDPRFRY 144
           +I+R+ G ISL+   LD E    Y  TV ATD     ++      I + + ND  P F  
Sbjct: 319 TINRETGVISLIGTGLDREKFPEYTLTVQATDLEGAGLSVEGKAIIQITDANDNAPIFDP 378

Query: 145 PQYELFLPHIPLADLTPGSVIGKVEAADGDKGD----RVTLSLRGPYEKMFSINDS---- 196
             Y   +P     +   G  + ++   D D       +    +R      F+I       
Sbjct: 379 KTYTALVP-----ENEIGFEVQRLSVTDLDMPGTPAWQAVYKIRVNEGGFFNITTDPESN 433

Query: 197 -GHISIVDLSALN---TSTIQLVVVATDT---GNPPRQASVP 231
            G ++      L+        L +   +      P   ++  
Sbjct: 434 QGILTTA--KGLDFELRKQYVLQITVENAEPFSVPLPTSTAT 473

>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction, adhesion, structural protein; HET: NAG NDG; 30.00A {Mus musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A* Length = 880

 Score = 67.2 bits (164), Expect = 3e-12
 Identities = 27/218 (12%), Positives = 69/218 (31%), Gaps = 37/218 (16%)

Query: 44  QFSKNEYSVSALE-NLPVNYVLLTVTTNKPRDL-RVKYWLSNDYGERFSISRQGDISLMQ 101
            FS  EY  S     L     L  V  +         Y + +     F +   G + + +
Sbjct: 36  GFSSAEYIFSVNRRELERGRKLGKVNFSDCTTRKHGLYDVGDSR---FRVLPDGTVLVKR 92

Query: 102 CLDYETEDSYRFTVYATDTLMTT-----------------SATVNISVVNVNDWDPRFRY 144
            +    +  +  + +    +  +                 S +  + V+   +     + 
Sbjct: 93  HVKLHKDTKFTISTWDARGIKHSTNIAVASKRHRSGEEAHSRSSKLPVLTFPETHTGLKR 152

Query: 145 PQYELFLPHIPLA---DLTPGSVIGKVEAADGDKGDRVTLSLRG-----PYEKMFSIN-D 195
            + +  +P I ++          + +++ ++ D+ ++V  S+ G     P + +F I  +
Sbjct: 153 KKRDWVIPPIKVSENERGPFPKRLVQIK-SNKDRFNKVYYSITGQGADNPPQGVFRIEWE 211

Query: 196 SGHISIVDLSAL---NTSTIQLVVVATDTGNPPRQASV 230
           +G + +     L         L   A      P +  +
Sbjct: 212 TGWMLV--TRPLDREEYDKYVLSSHAVSENGSPVEEPM 247

>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction, adhesion, structural protein; HET: NAG NDG; 30.00A {Mus musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A* Length = 880

 Score = 54.5 bits (131), Expect = 3e-08
 Identities = 21/142 (14%), Positives = 38/142 (26%), Gaps = 7/142 (4%)

Query: 109 DSYRFTVYATDTLMTTSATVNISVVNVNDWDPRFRYPQYELFLPHIPLADLTPGSVIGKV 168
              R        L+     V     +V+   P F   +Y      +   +L  G  +GKV
Sbjct: 4   TRLRNASVWLCGLLCLLQVVPSINADVSGCKPGFSSAEYIF---SVNRRELERGRKLGKV 60

Query: 169 EAADGDKGDRVTLSLRGPYEKMFSINDSGHISIV-DLSALNTSTIQLVVVATDTGNPPRQ 227
             +D          +       F +   G + +   +     +   +             
Sbjct: 61  NFSDCTTRKHGLYDVGDSR---FRVLPDGTVLVKRHVKLHKDTKFTISTWDARGIKHSTN 117

Query: 228 ASVPAIMHFPEAIVQQASSKLN 249
            +V +  H         SSKL 
Sbjct: 118 IAVASKRHRSGEEAHSRSSKLP 139

>1l3w_A EP-cadherin, C-cadherin; cell adhesion, calcium binding, extracellular, ECT metal binding protein; HET: NAG NDG; 3.08A {Xenopus laevis} SCOP: b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 Length = 546

 Score =  109 bits (275), Expect = 2e-26
 Identities = 41/212 (19%), Positives = 86/212 (40%), Gaps = 32/212 (15%)

Query: 44  QFSKNEYSVSALENLPVNYVLLTVTTNKPRDL------RVKYWLSNDYGERFSI-----S 92
            F    Y+    EN  + + +  ++     D+      +  Y +  + G  F+I     S
Sbjct: 226 IFDPKTYTALVPEN-EIGFEVQRLSVTD-LDMPGTPAWQAVYKIRVNEGGFFNITTDPES 283

Query: 93  RQGDISLMQCLDYETEDSYRFTVYATDT------LMTTSATVNISVVNVNDWDPRFRYPQ 146
            QG ++  + LD+E    Y   +   +       L T++ATV ++V +VN+  P F    
Sbjct: 284 NQGILTTAKGLDFELRKQYVLQITVENAEPFSVPLPTSTATVTVTVEDVNE-APFFVPAV 342

Query: 147 YELFLPHIPLADLTPGSVIGKVEAADGDKGD--RVTLSLRGPYEKMFSIN-DSGHISIV- 202
             + +      DL+ G  I  + A D DK    +++  +     +  ++N D+G ++   
Sbjct: 343 SRVDVS----EDLSRGEKIISLVAQDPDKQQIQKLSYFIGNDPARWLTVNKDNGIVTGNG 398

Query: 203 ----DLSALNTSTIQLVVVATDTGNPPRQASV 230
               +   +  +T  ++++ TD G      + 
Sbjct: 399 NLDRESEYVKNNTYTVIMLVTDDGVSVGTGTG 430

>1l3w_A EP-cadherin, C-cadherin; cell adhesion, calcium binding, extracellular, ECT metal binding protein; HET: NAG NDG; 3.08A {Xenopus laevis} SCOP: b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 Length = 546

 Score = 94.7 bits (236), Expect = 3e-21
 Identities = 45/209 (21%), Positives = 81/209 (38%), Gaps = 28/209 (13%)

Query: 44  QFSKNEYSVSALENLPVNYVLLTVTTNKPRDLRVKYWLSNDYGER-----FSISRQ-GDI 97
            +      VS  E  P    L+ + +NK R  +V Y ++    +      F I  + G +
Sbjct: 7   DWVIPPIKVSENERGPFPKRLVQIKSNKDRFNKVYYSITGQGADNPPQGVFRIEWETGWM 66

Query: 98  SLMQCLDYETEDSYRFTVYATDT---LMTTSATVNISVVNVNDWDPRFRYPQYELFLPHI 154
            + + LD E  D Y  + +A       +     + I+V++ ND  P+F    +   +   
Sbjct: 67  LVTRPLDREEYDKYVLSSHAVSENGSPVEEPMEITINVIDQNDNRPKFTQDVFRGSVRE- 125

Query: 155 PLADLTPGSVIGKVEAADGDKGD-----RVTLSL-----RGPYEKMFSIN-DSGHISIVD 203
               + PG+ +  V A D D         ++ S+       P   +F+IN ++G IS++ 
Sbjct: 126 ---GVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPNLFTINRETGVISLI- 181

Query: 204 LSALN---TSTIQLVVVATDTGNPPRQAS 229
            + L+        L V ATD         
Sbjct: 182 GTGLDREKFPEYTLTVQATDLEGAGLSVE 210

>1l3w_A EP-cadherin, C-cadherin; cell adhesion, calcium binding, extracellular, ECT metal binding protein; HET: NAG NDG; 3.08A {Xenopus laevis} SCOP: b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 Length = 546

 Score = 92.8 bits (231), Expect = 1e-20
 Identities = 35/204 (17%), Positives = 73/204 (35%), Gaps = 26/204 (12%)

Query: 44  QFSKNEYSVSALENLPVNYVLLTVTTNKP---RDLRVKYWLSNDYGERFSI-SRQGDISL 99
            F      V   E+L     ++++    P   +  ++ Y++ ND     ++    G ++ 
Sbjct: 337 FFVPAVSRVDVSEDLSRGEKIISLVAQDPDKQQIQKLSYFIGNDPARWLTVNKDNGIVTG 396

Query: 100 MQCLDYETE----DSYRFTVYATDT---LMTTSATVNISVVNVNDWDPRFRYPQYELFLP 152
              LD E+E    ++Y   +  TD    + T + T+ + V++VND  P      + +   
Sbjct: 397 NGNLDRESEYVKNNTYTVIMLVTDDGVSVGTGTGTLILHVLDVNDNGPVPSPRVFTMCDQ 456

Query: 153 HIPLADLTPGSVIGKVEAADGDKGD---RVTLSLRGPYEKMFSINDS--GHISIV-DLSA 206
                   P   +  +  +D D         +SL    +  +       G   ++     
Sbjct: 457 -------NPEPQV--LTISDADIPPNTYPYKVSLSHGSDLTWKAELDSKGTSMLLSPTQQ 507

Query: 207 LNTSTIQLVVVATDTGNPPRQASV 230
           L      + V+ +D  N P+   V
Sbjct: 508 LKKGDYSIYVLLSDAQNNPQLTVV 531

>1l3w_A EP-cadherin, C-cadherin; cell adhesion, calcium binding, extracellular, ECT metal binding protein; HET: NAG NDG; 3.08A {Xenopus laevis} SCOP: b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 Length = 546

 Score = 84.7 bits (210), Expect = 5e-18
 Identities = 39/222 (17%), Positives = 75/222 (33%), Gaps = 44/222 (19%)

Query: 44  QFSKNEYSVSALENLPVNYVLLTVTTNKPRDL---------RVKYWL-----SNDYGERF 89
           +F+++ +  S  E +     ++ V+     D           + Y +            F
Sbjct: 113 KFTQDVFRGSVREGVQPGTQVMAVSAT---DEDDNIDSLNGVLSYSILKQDPEEPIPNLF 169

Query: 90  SISRQ-GDISLM-QCLDYETEDSYRFTVYATDTL---MTTSATVNISVVNVNDWDPRFRY 144
           +I+R+ G ISL+   LD E    Y  TV ATD     ++      I + + ND  P F  
Sbjct: 170 TINRETGVISLIGTGLDREKFPEYTLTVQATDLEGAGLSVEGKAIIQITDANDNAPIFDP 229

Query: 145 PQYELFLPHIPLADLTPGSVIGKVEAADGDKGD----RVTLSLRGPYEKMFSI-----ND 195
             Y   +P     +   G  + ++   D D       +    +R      F+I     ++
Sbjct: 230 KTYTALVP-----ENEIGFEVQRLSVTDLDMPGTPAWQAVYKIRVNEGGFFNITTDPESN 284

Query: 196 SGHISIVDLSALN---TSTIQLVVVATDT---GNPPRQASVP 231
            G ++      L+        L +   +      P   ++  
Sbjct: 285 QGILTTA--KGLDFELRKQYVLQITVENAEPFSVPLPTSTAT 324

>3q2v_A Cadherin-1; cell adhesion, calcium binding; HET: MAN; 3.40A {Mus musculus} Length = 550

 Score =  109 bits (274), Expect = 3e-26
 Identities = 47/213 (22%), Positives = 83/213 (38%), Gaps = 33/213 (15%)

Query: 44  QFSKNEYSVSALENLPVNYVLLTVTTNKPRDL------RVKYWLSNDYGERFSI-----S 92
            F+ + Y     EN  VN  + T+      D       +  Y + ND  ++F +     +
Sbjct: 220 VFNPSTYQGQVPEN-EVNARIATLKVTD-DDAPNTPAWKAVYTVVNDPDQQFVVVTDPTT 277

Query: 93  RQGDISLMQCLDYETEDSYRFTVYATDT------LMTTSATVNISVVNVNDWDPRFRYPQ 146
             G +   + LD+E +  Y   V   +       L+ ++ATV + VV+VN+  P F   +
Sbjct: 278 NDGILKTAKGLDFEAKQQYILHVRVENEEPFEGSLVPSTATVTVDVVDVNE-APIFMPAE 336

Query: 147 YELFLPHIPLADLTPGSVIGKVEAADGDKGD--RVTLSLRGPYEKMFSIN-DSGHISIV- 202
             + +P     D   G  I    A + D     ++T  +         IN ++G I    
Sbjct: 337 RRVEVPE----DFGVGQEITSYTAREPDTFMDQKITYRIWRDTANWLEINPETGAIFTRA 392

Query: 203 -----DLSALNTSTIQLVVVATDTGNPPRQASV 230
                D   +  ST   +++ATD G+P    + 
Sbjct: 393 EMDREDAEHVKNSTYVALIIATDDGSPIATGTG 425

>3q2v_A Cadherin-1; cell adhesion, calcium binding; HET: MAN; 3.40A {Mus musculus} Length = 550

 Score = 92.4 bits (230), Expect = 1e-20
 Identities = 35/206 (16%), Positives = 67/206 (32%), Gaps = 28/206 (13%)

Query: 44  QFSKNEYSVSALENLPVNYVLLTVTTNKP---RDLRVKYWLSNDYGERFSISRQ-GDISL 99
            F   E  V   E+  V   + + T  +P    D ++ Y +  D      I+ + G I  
Sbjct: 331 IFMPAERRVEVPEDFGVGQEITSYTAREPDTFMDQKITYRIWRDTANWLEINPETGAIFT 390

Query: 100 MQCLDYET-----EDSYRFTVYATDT---LMTTSATVNISVVNVNDWDPRFRYPQYELFL 151
              +D E        +Y   + ATD    + T + T+ + +++VND  P       +   
Sbjct: 391 RAEMDREDAEHVKNSTYVALIIATDDGSPIATGTGTLLLVLLDVNDNAPIPEPRNMQFCQ 450

Query: 152 PHIPLADLTPGSVIGKVEAADGDKG---DRVTLSLRGPYEKMFSI---NDSGHISIV-DL 204
                    P      +   D D        T  L       ++I   + +    I+   
Sbjct: 451 R-------NPQPH--IITILDPDLPPNTSPFTAELTHGASVNWTIEYNDAAQESLILQPR 501

Query: 205 SALNTSTIQLVVVATDTGNPPRQASV 230
             L     ++ +   D  N  +  ++
Sbjct: 502 KDLEIGEYKIHLKLADNQNKDQVTTL 527

>3q2v_A Cadherin-1; cell adhesion, calcium binding; HET: MAN; 3.40A {Mus musculus} Length = 550

 Score = 88.5 bits (220), Expect = 2e-19
 Identities = 36/222 (16%), Positives = 78/222 (35%), Gaps = 44/222 (19%)

Query: 44  QFSKNEYSVSALENLPVNYVLLTVTTNKPRDL---------RVKYWL-----SNDYGERF 89
           +F++  +  S  E       ++ V+     D           + Y +        +   F
Sbjct: 107 EFTQEVFEGSVAEGAVPGTSVMKVSAT---DADDDVNTYNAAIAYTIVSQDPELPHKNMF 163

Query: 90  SISRQ-GDISLMQ-CLDYETEDSYRFTVYATDTL---MTTSATVNISVVNVNDWDPRFRY 144
           +++R  G IS++   LD E+  +Y   V A D     ++T+A   I+V ++ND  P F  
Sbjct: 164 TVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKDINDNAPVFNP 223

Query: 145 PQYELFLPHIPLADLTPGSVIGKVEAADGDKGD----RVTLSLRGPYEKMFSI-----ND 195
             Y+  +P     +    + I  ++  D D  +    +   ++    ++ F +      +
Sbjct: 224 STYQGQVP-----ENEVNARIATLKVTDDDAPNTPAWKAVYTVVNDPDQQFVVVTDPTTN 278

Query: 196 SGHISIVDLSALN---TSTIQLVVVATDTG---NPPRQASVP 231
            G +       L+        L V   +          ++  
Sbjct: 279 DGILKTA--KGLDFEAKQQYILHVRVENEEPFEGSLVPSTAT 318

>3q2v_A Cadherin-1; cell adhesion, calcium binding; HET: MAN; 3.40A {Mus musculus} Length = 550

 Score = 86.2 bits (214), Expect = 2e-18
 Identities = 47/205 (22%), Positives = 85/205 (41%), Gaps = 30/205 (14%)

Query: 50  YSVSALENLPVNYV--LLTVTTNKPRDLRVKYWLSNDYGER-----FSISRQ-GDISLMQ 101
             +S  EN    +   L+ + +N+ ++ +V Y ++    ++     F I R+ G + + Q
Sbjct: 5   PPISCPENEKGEFPKNLVQIKSNRDKETKVFYSITGQGADKPPVGVFIIERETGWLKVTQ 64

Query: 102 CLDYETEDSYRFTVYATDT---LMTTSATVNISVVNVNDWDPRFRYPQYELFLPHIPLAD 158
            LD E    Y    +A  +    +     + I+V + ND  P F    +E  +       
Sbjct: 65  PLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAE----G 120

Query: 159 LTPGSVIGKVEAADGDKGD-----RVTLSL-----RGPYEKMFSIN-DSGHISIVDLSAL 207
             PG+ + KV A D D         +  ++       P++ MF++N D+G IS++  S L
Sbjct: 121 AVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVL-TSGL 179

Query: 208 N---TSTIQLVVVATDTGNPPRQAS 229
           +     T  LVV A D        +
Sbjct: 180 DRESYPTYTLVVQAADLQGEGLSTT 204

>3q2v_A Cadherin-1; cell adhesion, calcium binding; HET: MAN; 3.40A {Mus musculus} Length = 550

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 7/76 (9%), Positives = 21/76 (27%), Gaps = 4/76 (5%)

Query: 76  RVKYWLSNDYGERFSISRQ---GDISLMQCLDYETEDSYRFTVYATDT-LMTTSATVNIS 131
                L++     ++I       +  ++Q         Y+  +   D        T+++ 
Sbjct: 471 PFTAELTHGASVNWTIEYNDAAQESLILQPRKDLEIGEYKIHLKLADNQNKDQVTTLDVH 530

Query: 132 VVNVNDWDPRFRYPQY 147
           V +            +
Sbjct: 531 VCDCEGTVNNCMKAHH 546

>3q2w_A Cadherin-2; cell adhesion, calcium binding; HET: MAN NAG; 3.20A {Mus musculus} Length = 559

 Score =  104 bits (262), Expect = 8e-25
 Identities = 40/217 (18%), Positives = 86/217 (39%), Gaps = 36/217 (16%)

Query: 44  QFSKNEYSVSALENLPVNYVLLTVTTNKPRDL------RVKYW-LSNDYGERFSI----- 91
           +F+   +     EN  V+ ++  +T    +D          Y     D   RF+I     
Sbjct: 222 EFTAMTFYGEVPEN-RVDVIVANLTVTD-KDQPHTPAWNAAYRISGGDPTGRFAILTDPN 279

Query: 92  SRQGDISLMQCLDYETEDSYRFTVYATDTLM---------TTSATVNISVVNVNDWDPRF 142
           S  G +++++ +D+ET   +  TV A + +           ++ATV+++V++VN+ +P F
Sbjct: 280 SNDGLVTVVKPIDFETNRMFVLTVAAENQVPLAKGIQHPPQSTATVSVTVIDVNE-NPYF 338

Query: 143 RYPQYELFLPHIPLADLTPGSVIGKVEAADGDKGD--RVTLSLRGPYEKMFSIN-DSGHI 199
                 +         L  G+++  + A D D+     +  +          I+  +G I
Sbjct: 339 APNPKIIRQEE----GLHAGTMLTTLTAQDPDRYMQQNIRYTKLSDPANWLKIDPVNGQI 394

Query: 200 SIV-----DLSALNTSTIQLVVVATDTGNPPRQASVP 231
           + +     +   +  +      +A+D G PP   +  
Sbjct: 395 TTIAVLDRESPNVKNNIYNATFLASDNGIPPMSGTGT 431

>3q2w_A Cadherin-2; cell adhesion, calcium binding; HET: MAN NAG; 3.20A {Mus musculus} Length = 559

 Score = 91.2 bits (227), Expect = 3e-20
 Identities = 43/210 (20%), Positives = 81/210 (38%), Gaps = 34/210 (16%)

Query: 44  QFSKNEYSVSALENLPVNYVLLTVTTNKPRDL------RVKYWLSNDYGERFSISRQ-GD 96
            F+ N   +   E L    +L T+T    +D        ++Y   +D      I    G 
Sbjct: 337 YFAPNPKIIRQEEGLHAGTMLTTLT---AQDPDRYMQQNIRYTKLSDPANWLKIDPVNGQ 393

Query: 97  ISLMQCLDYET----EDSYRFTVYATDT---LMTTSATVNISVVNVNDWDPRFRYPQYEL 149
           I+ +  LD E+     + Y  T  A+D     M+ + T+ I ++++ND  P+    + E 
Sbjct: 394 ITTIAVLDRESPNVKNNIYNATFLASDNGIPPMSGTGTLQIYLLDINDNAPQVLPQEAET 453

Query: 150 FLPHIPLADLTPGSVIGKVEAADGDKG---DRVTLSLR---GPYEKMFSIND-SGHISIV 202
                      P S+   + A D D           L       ++ ++IN  +G  + +
Sbjct: 454 ------CETPEPNSIN--ITALDYDIDPNAGPFAFDLPLSPVTIKRNWTINRLNGDFAQL 505

Query: 203 --DLSALNTSTIQLVVVATDTGNPPRQASV 230
              +  L     ++ ++ TD+GNPP+    
Sbjct: 506 NLKIKFLEAGIYEVPIIITDSGNPPKSNIS 535

>3q2w_A Cadherin-2; cell adhesion, calcium binding; HET: MAN NAG; 3.20A {Mus musculus} Length = 559

 Score = 86.6 bits (215), Expect = 1e-18
 Identities = 41/220 (18%), Positives = 74/220 (33%), Gaps = 40/220 (18%)

Query: 44  QFSKNEYSVSALENLPVNYVLLTVTTNKPRDL--------RVKYWL-----SNDYGERFS 90
           +F    ++ S  E       ++TVT     D          ++Y +     S      F+
Sbjct: 107 EFLHQVWNGSVPEGSKPGTYVMTVTA---IDADDPNALNGMLRYRILSQAPSTPSPNMFT 163

Query: 91  ISRQ-GDISLM-QCLDYETEDSYRFTVYATD------TLMTTSATVNISVVNVNDWDPRF 142
           I+ + GDI  +   LD E    Y   + ATD        ++ +AT  I+V +VND  P F
Sbjct: 164 INNETGDIITVAAGLDREKVQQYTLIIQATDMEGNPTYGLSNTATAVITVTDVNDNPPEF 223

Query: 143 RYPQYELFLPHIPLADLTPGSVIGKVEAADGDKGD----RVTLS-LRGPYEKMFSI---N 194
               +   +P     +     ++  +   D D+              G     F+I    
Sbjct: 224 TAMTFYGEVP-----ENRVDVIVANLTVTDKDQPHTPAWNAAYRISGGDPTGRFAILTDP 278

Query: 195 DSGHISIVDLSALN---TSTIQLVVVATDTGNPPRQASVP 231
           +S    +  +  ++        L V A +     +    P
Sbjct: 279 NSNDGLVTVVKPIDFETNRMFVLTVAAENQVPLAKGIQHP 318

>3q2w_A Cadherin-2; cell adhesion, calcium binding; HET: MAN NAG; 3.20A {Mus musculus} Length = 559

 Score = 79.7 bits (197), Expect = 2e-16
 Identities = 40/198 (20%), Positives = 82/198 (41%), Gaps = 29/198 (14%)

Query: 52  VSALENLPVNYVLL--TVTTNKPRDLRVKYWLSNDYGER-----FSISRQ-GDISLMQCL 103
           ++  EN    +      + +++ ++L ++Y ++    ++     F I+   G +S+ + L
Sbjct: 7   INLPENSRGPFPQELVRIRSDRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPL 66

Query: 104 DYETEDSYRFTVYATDT---LMTTSATVNISVVNVNDWDPRFRYPQYELFLPHIPLADLT 160
           D E    +    +A D     +     + I+V+++ND  P F +  +   +P        
Sbjct: 67  DRELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEFLHQVWNGSVPE----GSK 122

Query: 161 PGSVIGKVEAADGDKGD----RVTLSL-----RGPYEKMFSIN-DSGHISIVDLSALN-- 208
           PG+ +  V A D D  +     +   +       P   MF+IN ++G I  V  + L+  
Sbjct: 123 PGTYVMTVTAIDADDPNALNGMLRYRILSQAPSTPSPNMFTINNETGDIITV-AAGLDRE 181

Query: 209 -TSTIQLVVVATDTGNPP 225
                 L++ ATD    P
Sbjct: 182 KVQQYTLIIQATDMEGNP 199

>3qrb_A Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus musculus} PDB: 1ff5_A 3lng_A 2qvf_B 1edh_A 3lne_A 1q1p_A 3lni_A 3q2l_A* 3q2n_A* 3lnh_A 3lnf_A 2o72_A 1suh_A Length = 213

 Score = 98.6 bits (246), Expect = 2e-24
 Identities = 48/209 (22%), Positives = 83/209 (39%), Gaps = 30/209 (14%)

Query: 50  YSVSALENLPVNYVLLTVTT--NKPRDLRVKYWLS-----NDYGERFSISRQ-GDISLMQ 101
            ++S  EN    +    V    N+ ++ +V Y ++           F I R+ G + + Q
Sbjct: 5   AAISCPENEKGEFPKNLVQIKSNRDKETKVFYSITGQGADKPPVGVFIIERETGWLKVTQ 64

Query: 102 CLDYETEDSYRFTVYATDT---LMTTSATVNISVVNVNDWDPRFRYPQYELFLPHIPLAD 158
            LD E    Y    +A  +    +     + I+V + ND  P F    +E  +       
Sbjct: 65  PLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAE----G 120

Query: 159 LTPGSVIGKVEAADGDKGD-----RVTLSL-----RGPYEKMFSIN-DSGHISIVDLSAL 207
             PG+ + KV A D D         +  ++       P++ MF++N D+G IS++  S L
Sbjct: 121 AVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVL-TSGL 179

Query: 208 ---NTSTIQLVVVATDTGNPPRQASVPAI 233
              +  T  LVV A D        +  A+
Sbjct: 180 DRESYPTYTLVVQAADLQGEGLSTTAKAV 208

>3qrb_A Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus musculus} PDB: 1ff5_A 3lng_A 2qvf_B 1edh_A 3lne_A 1q1p_A 3lni_A 3q2l_A* 3q2n_A* 3lnh_A 3lnf_A 2o72_A 1suh_A Length = 213

 Score = 54.3 bits (131), Expect = 8e-09
 Identities = 23/108 (21%), Positives = 43/108 (39%), Gaps = 22/108 (20%)

Query: 44  QFSKNEYSVSALENLPVNYVLLTVTTNKPRDL---------RVKYWLSN-----DYGERF 89
           +F++  +  S  E       ++ V+     D           + Y + +      +   F
Sbjct: 107 EFTQEVFEGSVAEGAVPGTSVMKVSAT---DADDDVNTYNAAIAYTIVSQDPELPHKNMF 163

Query: 90  SISRQ-GDIS-LMQCLDYETEDSYRFTVYATD---TLMTTSATVNISV 132
           +++R  G IS L   LD E+  +Y   V A D     ++T+A   I+V
Sbjct: 164 TVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITV 211

>3ubh_A Neural-cadherin; cell adhesion; 2.70A {Drosophila melanogaster} Length = 419

 Score = 99.7 bits (249), Expect = 2e-23
 Identities = 47/201 (23%), Positives = 81/201 (40%), Gaps = 22/201 (10%)

Query: 44  QFSKNEYSVSALENLPVNYVLLTVTTNKPRDLRVKY--WLSNDYGERFSI-SRQGDISLM 100
           QF    Y     EN   +  ++++      D  ++Y           F+I    G + L 
Sbjct: 218 QFYMPSYEAEIPENQKKDSDIISIKAKSFADREIRYTLKAQGQGAGTFNIGPTSGIVKLA 277

Query: 101 QCLDYET---EDSYRFTVYATD--TLMTTSATVNISVVNVNDWDPRFRYPQYELFLPHIP 155
           + LD+E       Y   V AT+     +TS  + I V +VND  P+F  P Y+     + 
Sbjct: 278 KELDFEDLRQPHVYSLIVTATEDSGGFSTSVDLTIRVTDVNDNAPKFELPDYQAHN--VD 335

Query: 156 LADLTPGSVIGKVEAADGDKGD--RVTLSLRGPYEKMFSINDSGHISIVDLSALN----T 209
             D+  G+ I +V+A D D G    +   +   +   F+++ +G I       L+     
Sbjct: 336 -EDIPLGTSILRVKAMDSDSGSNAEIEYLVSDDH---FAVDSNGIIVN--NKQLDADNNN 389

Query: 210 STIQLVVVATDTGNPPRQASV 230
           +  + +V A D G PP+    
Sbjct: 390 AYYEFIVTAKDKGEPPKSGVA 410

>3ubh_A Neural-cadherin; cell adhesion; 2.70A {Drosophila melanogaster} Length = 419

 Score = 87.0 bits (216), Expect = 5e-19
 Identities = 42/208 (20%), Positives = 69/208 (33%), Gaps = 30/208 (14%)

Query: 44  QFSKNE--YSVSALENLPVNYVLLTVTTNKPRDL----RVKY-WLSNDYGERFSI-SRQG 95
            F             N P N  + T+     RD      + Y  + +  G RF +  R G
Sbjct: 110 YFINRPLPMQAVVQLNAPPNTPVFTLQA---RDPDTDHNIHYFIVRDRTGGRFEVDERSG 166

Query: 96  DISLMQCLDYETEDSYRFTVYATD-------TLMTTSATVNISVVNVNDWDPRFRYPQYE 148
            +       ++ +  Y   V A D           ++    +S+V      P+F  P YE
Sbjct: 167 VVRTRGTDLFQLDMEYVLYVKAEDQNGKVDDRRFQSTPEERLSIV-GGKRAPQFYMPSYE 225

Query: 149 LFLPHIPLADLTPGSVIGKVEAADGDKGD-RVTLSLRGPYEKMFSIN-DSGHISIVDL-- 204
             +P     +    S I  ++A      + R TL  +G     F+I   SG + +     
Sbjct: 226 AEIPE----NQKKDSDIISIKAKSFADREIRYTLKAQGQGAGTFNIGPTSGIVKLAKELD 281

Query: 205 --SALNTSTIQLVVVATDTGNPPRQASV 230
                      L+V AT+  +     SV
Sbjct: 282 FEDLRQPHVYSLIVTATE-DSGGFSTSV 308

>3ubh_A Neural-cadherin; cell adhesion; 2.70A {Drosophila melanogaster} Length = 419

 Score = 67.3 bits (165), Expect = 1e-12
 Identities = 31/181 (17%), Positives = 51/181 (28%), Gaps = 32/181 (17%)

Query: 76  RVKYWLS-NDYGERFSISRQ---------GDISLMQCLDYE------TEDSYRFTVYATD 119
           +  + L      E F I            G + + +  DYE      T D +        
Sbjct: 26  KSVFQLEKETDKETFKIRDDNPWVTVETNGAVRVKKKWDYEELGPEKTIDFWVIITNMGH 85

Query: 120 T---LMTTSATVNISVVNVNDWDPRFRYPQ--YELFLPHIPLADLTPGSVIGKVEAADGD 174
                 T +  V I V +VND  P F       +  +      +  P + +  ++A D D
Sbjct: 86  NAGIKYTDNQRVIILVKDVNDEPPYFINRPLPMQAVVQL----NAPPNTPVFTLQARDPD 141

Query: 175 KGDRVTLSL-RGPYEKMFSIN-DSGHISIVDLSALN---TSTIQLVVVATDTGNPPRQAS 229
               +   + R      F ++  SG +                 L V A D         
Sbjct: 142 TDHNIHYFIVRDRTGGRFEVDERSGVVRTR--GTDLFQLDMEYVLYVKAEDQNGKVDDRR 199

Query: 230 V 230
            
Sbjct: 200 F 200

>3ppe_A Vascular endothelial cadherin; extracellular cadherin (EC) domain, beta barrel, IG-domain L domain swapped dimer interface; 2.10A {Gallus gallus} Length = 203

 Score = 92.8 bits (231), Expect = 3e-22
 Identities = 42/202 (20%), Positives = 75/202 (37%), Gaps = 22/202 (10%)

Query: 47  KNEYSVSALENLPVNYVLLTVTTNKPRDLRVKYWLS-NDYGERFSISRQ-GDISLMQCLD 104
            N   +    + P+ + +  +T++   +    Y +        F +    GDI   + LD
Sbjct: 4   WNRMHIREEIDSPLPHHVGKLTSSVG-NKNAMYIIEGESANTIFKVQGYDGDIYAFERLD 62

Query: 105 YETEDSYRFTVYATDTL----MTTSATVNISVVNVNDWDPRFRYPQYELFLPHIPLADLT 160
            E +  Y  T +  D      +   +   I V ++ND  P F    +   +P        
Sbjct: 63  REKKAEYELTAHIIDRRNNRSLEPPSKFIIKVSDINDNAPIFVQKIFNGSVPE----MSR 118

Query: 161 PGSVIGKVEAADGDKGD-----RVTLSLRGPYEKMFSINDSGHISIVDLSAL---NTSTI 212
            G+ + KV A D D         VT  +    E  F+++DSG I     + L   + S  
Sbjct: 119 LGTSVTKVTAEDADDPTVAGHATVTYQIIKGNE-YFTVDDSGVI-FTARADLDRESQSAY 176

Query: 213 QLVVVATD-TGNPPRQASVPAI 233
           +++V A D  G     ++   I
Sbjct: 177 EIIVKAKDALGLTGESSTATVI 198

>3ppe_A Vascular endothelial cadherin; extracellular cadherin (EC) domain, beta barrel, IG-domain L domain swapped dimer interface; 2.10A {Gallus gallus} Length = 203

 Score = 59.6 bits (145), Expect = 9e-11
 Identities = 21/100 (21%), Positives = 37/100 (37%), Gaps = 12/100 (12%)

Query: 44  QFSKNEYSVSALENLPVNYVLLTVT------TNKPRDLRVKYWLSNDYGERFSISRQ-GD 96
            F +  ++ S  E   +   +  VT              V Y +     E F++      
Sbjct: 103 IFVQKIFNGSVPEMSRLGTSVTKVTAEDADDPTVAGHATVTYQIIKG-NEYFTVDDSGVI 161

Query: 97  ISLMQCLDYETEDSYRFTVYATDTL----MTTSATVNISV 132
            +    LD E++ +Y   V A D L     +++ATV I +
Sbjct: 162 FTARADLDRESQSAYEIIVKAKDALGLTGESSTATVIIRL 201

>3ubf_A Neural-cadherin; cell adhesion; 2.50A {Drosophila melanogaster} PDB: 3ubg_A Length = 316

 Score = 94.8 bits (236), Expect = 3e-22
 Identities = 39/207 (18%), Positives = 68/207 (32%), Gaps = 26/207 (12%)

Query: 44  QFSKNE--YSVSALENLPVNYVLLTVTTNKP---RDLRVKYWLSNDYGERFSISRQ-GDI 97
            F             N P N  + T+    P    ++     + +  G RF +  + G +
Sbjct: 105 YFINRPLPMQAVVQLNAPPNTPVFTLQARDPDTDHNIHYFI-VRDRTGGRFEVDERSGVV 163

Query: 98  SLMQCLDYETEDSYRFTVYATD-------TLMTTSATVNISVVNVNDWDPRFRYPQYELF 150
                  ++ +  Y   V A D           ++    +S+V      P+F  P YE  
Sbjct: 164 RTRGTDLFQLDMEYVLYVKAEDQNGKVDDRRFQSTPEERLSIVG-GKRAPQFYMPSYEAE 222

Query: 151 LPHIPLADLTPGSVIGKVEAADGDKGD-RVTLSLRGPYEKMFSIN-DSGHISIVDL---- 204
           +P     +    S I  ++A      + R TL  +G     F+I   SG + +       
Sbjct: 223 IPE----NQKKDSDIISIKAKSFADREIRYTLKAQGQGAGTFNIGPTSGIVKLAKELDFE 278

Query: 205 SALNTSTIQLVVVATDTGNPPRQASVP 231
                    L+V AT+  +     SV 
Sbjct: 279 DLRQPHVYSLIVTATE-DSGGFSTSVD 304

>3ubf_A Neural-cadherin; cell adhesion; 2.50A {Drosophila melanogaster} PDB: 3ubg_A Length = 316

 Score = 75.1 bits (185), Expect = 2e-15
 Identities = 27/160 (16%), Positives = 49/160 (30%), Gaps = 16/160 (10%)

Query: 83  NDYGERFSISRQGDISLMQCLDYE------TEDSYRFTVYATDTL---MTTSATVNISVV 133
            D     ++   G + + +  DYE      T D +              T +  V I V 
Sbjct: 38  RDDNPWVTVETNGAVRVKKKWDYEELGPEKTIDFWVIITNMGHNAGIKYTDNQRVIILVK 97

Query: 134 NVNDWDPRFRYPQYELFLPHIPLADLTPGSVIGKVEAADGDKGDRVTLS-LRGPYEKMFS 192
           +VND  P F      +    + L +  P + +  ++A D D    +    +R      F 
Sbjct: 98  DVNDEPPYFINRPLPMQAV-VQL-NAPPNTPVFTLQARDPDTDHNIHYFIVRDRTGGRFE 155

Query: 193 INDSGHISIVDLSALN---TSTIQLVVVATDTGNPPRQAS 229
           +++   + +               L V A D         
Sbjct: 156 VDERSGV-VRTRGTDLFQLDMEYVLYVKAEDQNGKVDDRR 194

>3ubf_A Neural-cadherin; cell adhesion; 2.50A {Drosophila melanogaster} PDB: 3ubg_A Length = 316

 Score = 69.7 bits (171), Expect = 1e-13
 Identities = 26/102 (25%), Positives = 41/102 (40%), Gaps = 8/102 (7%)

Query: 44  QFSKNEYSVSALENLPVNYVLLTVTTNKPRDLRVKYWL--SNDYGERFSI-SRQGDISLM 100
           QF    Y     EN   +  ++++      D  ++Y L         F+I    G + L 
Sbjct: 213 QFYMPSYEAEIPENQKKDSDIISIKAKSFADREIRYTLKAQGQGAGTFNIGPTSGIVKLA 272

Query: 101 QCLDYETEDS---YRFTVYATDTL--MTTSATVNISVVNVND 137
           + LD+E       Y   V AT+     +TS  + I V +VND
Sbjct: 273 KELDFEDLRQPHVYSLIVTATEDSGGFSTSVDLTIRVTDVND 314

>2x2u_A Proto-oncogene tyrosine-protein kinase receptor RET; hirschsprung disease, extracellular domain, disease mutation, transferase, glycoprotein; HET: NAG SO4; 2.00A {Homo sapiens} Length = 246

 Score = 91.9 bits (228), Expect = 1e-21
 Identities = 42/231 (18%), Positives = 57/231 (24%), Gaps = 44/231 (19%)

Query: 43  LQFSKNEYSVSALENLPVNYVLLTVT-TNKPRD----------LRVKYWLSNDYGERFSI 91
           L FS++ Y      +      LL V       +          L   Y           I
Sbjct: 1   LYFSRDAYWEKLYVDQAAGTPLLYVHALRDAPEEVPSFRLGQHLYGTYRTRLHENNWIRI 60

Query: 92  -SRQGDISLMQCLDYETEDSYRF--------TVYATDTL-----------MTTSATVNIS 131
               G + L + LD+ + +            TVY    L               A V  S
Sbjct: 61  QEDTGLLYLQRSLDHSSWEKLSVRNRGFPLLTVYLKVFLSPTSLREGECQWPGCARVYFS 120

Query: 132 VVNVNDWDPRFRYPQYELFLPHIPLA----DLTPGSVIGKVEAADGDKGD--RVTLSLRG 185
             N +        P+   F    P      +  PG+                 V   L  
Sbjct: 121 FFNTSFPACSSLKPRELCFPETRPSFRIRENRPPGTFHQFRLLPVQFLCPQISVAYRLLE 180

Query: 186 PYEKMFSIN-DSGHISIVDLSAL---NTSTIQLVVVATD-TGNPPRQASVP 231
                F    DS  +S     AL        +LV V T   G       VP
Sbjct: 181 GEGLPFRSAPDSLEVST--RWALDREQREKYELVAVCTVHAGAREEVVMVP 229

>2x2u_A Proto-oncogene tyrosine-protein kinase receptor RET; hirschsprung disease, extracellular domain, disease mutation, transferase, glycoprotein; HET: NAG SO4; 2.00A {Homo sapiens} Length = 246

 Score = 73.4 bits (180), Expect = 4e-15
 Identities = 24/114 (21%), Positives = 33/114 (28%), Gaps = 10/114 (8%)

Query: 38  TSLRELQFSKNEYSVSALENLPVNYVLLTVTTNKPRDL----RVKYWLSNDYGERFSI-S 92
              REL F +   S    EN P             + L     V Y L    G  F    
Sbjct: 132 LKPRELCFPETRPSFRIRENRPPGTFHQFRLLP-VQFLCPQISVAYRLLEGEGLPFRSAP 190

Query: 93  RQGDISLMQCLDYETEDSYRFTVYATD----TLMTTSATVNISVVNVNDWDPRF 142
              ++S    LD E  + Y      T               ++V + +D  P F
Sbjct: 191 DSLEVSTRWALDREQREKYELVAVCTVHAGAREEVVMVPFPVTVYDEDDSAPEF 244

>2qvi_A Cadherin-2; beta barrel, strand SWAP, domain SWAP, calcium, cell adhesion, cleavage on PAIR of basic residues, glycoprotein, membrane; 3.01A {Mus musculus} SCOP: b.1.6.1 b.1.6.1 PDB: 1ncj_A Length = 215

 Score = 90.1 bits (224), Expect = 2e-21
 Identities = 41/201 (20%), Positives = 80/201 (39%), Gaps = 29/201 (14%)

Query: 52  VSALENLPVNYVLLTVTT--NKPRDLRVKYWLSNDYGER-----FSISRQ-GDISLMQCL 103
           ++  EN    +    V    ++ ++L ++Y ++    ++     F I+   G +S+ + L
Sbjct: 7   INLPENSRGPFPQELVRIRSDRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPL 66

Query: 104 DYETEDSYRFTVYATDT---LMTTSATVNISVVNVNDWDPRFRYPQYELFLPHIPLADLT 160
           D E    +    +A D     +     + I+V+++ND  P F +  +   +P        
Sbjct: 67  DRELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEFLHQVWNGSVPE----GSK 122

Query: 161 PGSVIGKVEAADGDKGD----RVTLSL-----RGPYEKMFSIN-DSGHISIVDLSAL--- 207
           PG+ +  V A D D  +     +   +       P   MF+IN ++G I  V  + L   
Sbjct: 123 PGTYVMTVTAIDADDPNALNGMLRYRILSQAPSTPSPNMFTINNETGDIITV-AAGLDRE 181

Query: 208 NTSTIQLVVVATDTGNPPRQA 228
                 L++ ATD    P   
Sbjct: 182 KVQQYTLIIQATDMEGNPTYG 202

>2qvi_A Cadherin-2; beta barrel, strand SWAP, domain SWAP, calcium, cell adhesion, cleavage on PAIR of basic residues, glycoprotein, membrane; 3.01A {Mus musculus} SCOP: b.1.6.1 b.1.6.1 PDB: 1ncj_A Length = 215

 Score = 55.8 bits (135), Expect = 2e-09
 Identities = 25/110 (22%), Positives = 43/110 (39%), Gaps = 24/110 (21%)

Query: 44  QFSKNEYSVSALENLPVNYVLLTVTTNKPRDL--------RVKYWL-----SNDYGERFS 90
           +F    ++ S  E       ++TVT     D          ++Y +     S      F+
Sbjct: 107 EFLHQVWNGSVPEGSKPGTYVMTVTAI---DADDPNALNGMLRYRILSQAPSTPSPNMFT 163

Query: 91  ISRQ-GDI-SLMQCLDYETEDSYRFTVYATD------TLMTTSATVNISV 132
           I+ + GDI ++   LD E    Y   + ATD        ++ +AT  I+V
Sbjct: 164 INNETGDIITVAAGLDREKVQQYTLIIQATDMEGNPTYGLSNTATAVITV 213

>2qvi_A Cadherin-2; beta barrel, strand SWAP, domain SWAP, calcium, cell adhesion, cleavage on PAIR of basic residues, glycoprotein, membrane; 3.01A {Mus musculus} SCOP: b.1.6.1 b.1.6.1 PDB: 1ncj_A Length = 215

 Score = 40.4 bits (95), Expect = 4e-04
 Identities = 15/83 (18%), Positives = 27/83 (32%), Gaps = 13/83 (15%)

Query: 160 TPGSVIGKVEAADGDKGD--RVTLSLRG-----PYEKMFSIN-DSGHISIVDLSAL---N 208
           + G    ++     D+     +  S+ G     P   +F IN  SG +S+     L    
Sbjct: 13  SRGPFPQELVRIRSDRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSV--TKPLDREL 70

Query: 209 TSTIQLVVVATDTGNPPRQASVP 231
            +   L   A D      +  + 
Sbjct: 71  IARFHLRAHAVDINGNQVENPID 93

>3lnd_A CDH6 protein, cadherin 6; cell adhesion, cell membrane, membrane, transmembr; 2.82A {Mus musculus} Length = 207

 Score = 88.1 bits (219), Expect = 1e-20
 Identities = 44/191 (23%), Positives = 73/191 (38%), Gaps = 23/191 (12%)

Query: 56  ENLPVNYVLLTVTTNKP--RDLRVKYWLS-NDYGERFSISRQ-GDISLMQCLDYETEDSY 111
           E    +Y  +    +     D  +KY LS +  G+ F I+   GDI   + LD E +  Y
Sbjct: 12  EYTGSDYQYVGKLHSDQDRGDGSLKYILSGDGAGDLFIINENTGDIQATKRLDREEKPVY 71

Query: 112 RFTVYATDTL----MTTSATVNISVVNVNDWDPRFRYPQYELFLPHIPLADLTPGSVIGK 167
                A +      +   +   I + ++ND +P F    Y   +P         G+ + +
Sbjct: 72  ILRAQAVNRRTGRPVEPESEFIIKIHDINDNEPIFTKDVYTATVPE----MADVGTFVVQ 127

Query: 168 VEAADGDKGD-----RVTLSLRGPYEKMFSIN-DSGHISIVDLSAL---NTSTIQLVVVA 218
           V A D D        +V  S+    +  FS+  ++G I    L  +   N    Q+V+ A
Sbjct: 128 VTATDADDPTYGNSAKVVYSILQG-QPYFSVESETGIIKTA-LLNMDRENREQYQVVIQA 185

Query: 219 TDTGNPPRQAS 229
            D G      S
Sbjct: 186 KDMGGQMGGLS 196

>3lnd_A CDH6 protein, cadherin 6; cell adhesion, cell membrane, membrane, transmembr; 2.82A {Mus musculus} Length = 207

 Score = 55.8 bits (135), Expect = 2e-09
 Identities = 22/102 (21%), Positives = 41/102 (40%), Gaps = 14/102 (13%)

Query: 44  QFSKNEYSVSALENLPVNYVLLTVT------TNKPRDLRVKYWLSNDYGERFSISRQ-GD 96
            F+K+ Y+ +  E   V   ++ VT             +V Y +       FS+  + G 
Sbjct: 105 IFTKDVYTATVPEMADVGTFVVQVTATDADDPTYGNSAKVVYSILQG-QPYFSVESETGI 163

Query: 97  ISLMQ-CLDYETEDSYRFTVYATD-----TLMTTSATVNISV 132
           I      +D E  + Y+  + A D       ++ + TVNI++
Sbjct: 164 IKTALLNMDRENREQYQVVIQAKDMGGQMGGLSGTTTVNITL 205

>2a4e_A Cadherin-11; dimer, calcium binding, cell adhesion; 3.20A {Mus musculus} Length = 215

 Score = 88.1 bits (219), Expect = 1e-20
 Identities = 41/200 (20%), Positives = 70/200 (35%), Gaps = 31/200 (15%)

Query: 56  ENLPVNYVLLTVTTNKPRDL-----RVKYWLS-NDYGERFSISRQ-GDISLMQCLDYETE 108
           E    + VL+    +   D+      +KY LS    G  F I  + G+I   + LD E  
Sbjct: 13  EYTGPDPVLVGRLHS---DIDSGDGNIKYILSGEGAGTIFVIDDKSGNIHATKTLDREER 69

Query: 109 DSYRFTVYATD----TLMTTSATVNISVVNVNDWDPRFRYPQYELFLPHIPLADLTPGSV 164
             Y     A D      +   +   + V ++ND  P F +  Y   +P         G+ 
Sbjct: 70  AQYTLMAQAVDRDTNRPLEPPSEFIVKVQDINDNPPEFLHEIYHANVPE----RSNVGTS 125

Query: 165 IGKVEAADGDKGD-----RVTLSLRGPYEKMFSIN-DSGHISIVDLSAL---NTSTIQLV 215
           + +V A+D D        ++  S+    +  FS+   +G I    L  +         +V
Sbjct: 126 VIQVTASDADDPTYGNSAKLVYSILEG-QPYFSVEAQTGIIRTA-LPNMDREAKEEYHVV 183

Query: 216 VVATDTGN--PPRQASVPAI 233
           + A D G        +    
Sbjct: 184 IQAKDMGGHMGGLSGTTKVT 203

>2a4e_A Cadherin-11; dimer, calcium binding, cell adhesion; 3.20A {Mus musculus} Length = 215

 Score = 65.0 bits (159), Expect = 2e-12
 Identities = 20/111 (18%), Positives = 39/111 (35%), Gaps = 14/111 (12%)

Query: 44  QFSKNEYSVSALENLPVNYVLLTVT------TNKPRDLRVKYWLSNDYGERFSISRQ-GD 96
           +F    Y  +  E   V   ++ VT             ++ Y +       FS+  Q G 
Sbjct: 106 EFLHEIYHANVPERSNVGTSVIQVTASDADDPTYGNSAKLVYSILEG-QPYFSVEAQTGI 164

Query: 97  ISLMQ-CLDYETEDSYRFTVYATD-----TLMTTSATVNISVVNVNDWDPR 141
           I      +D E ++ Y   + A D       ++ +  V I++ +    D +
Sbjct: 165 IRTALPNMDREAKEEYHVVIQAKDMGGHMGGLSGTTKVTITLTDDYKDDDK 215

>2a62_A Cadherin-8; extracellular domain, homodimer, calcium binding, adhesion; 4.50A {Mus musculus} Length = 322

 Score = 89.7 bits (223), Expect = 2e-20
 Identities = 45/215 (20%), Positives = 81/215 (37%), Gaps = 37/215 (17%)

Query: 44  QFSKNEYSVSALENLPVNYVLLTVTTNKPRDL---------RVKYWLSNDYGERFSISRQ 94
           +F    Y  +  E   +   +  VT     D          ++ Y +       FSI  +
Sbjct: 105 EFLNGPYHATVPEMSILGTSVTNVTA---TDADDPVYGNSAKLVYSILEG-QPYFSIEPE 160

Query: 95  -GDISLMQ-CLDYETEDSYRFTVYATDTL-----MTTSATVNISVVNVNDWDPRFRYPQY 147
              I      +D E ++ Y   + A D       ++ + T+ +++ +VND  P+F    Y
Sbjct: 161 TAIIKTALPNMDREAKEEYLVVIQAKDMGGHSGGLSGTTTLTVTLTDVNDNPPKFAQSLY 220

Query: 148 ELFLPHIPLADLTPGSVIGKVEAADGDKGD--RVTLS-LRGPYEKMFSI-----NDSGHI 199
              +P     D+  G+ IG+V+A D D G+  + +   + G    +F I        G I
Sbjct: 221 HFSVP----EDVVLGTAIGRVKANDQDIGENAQSSYDIIDGDGTALFEITSDAQAQDGVI 276

Query: 200 SIVDLSALN---TSTIQLVVVATDTGNPPRQASVP 231
            +     L+     +  L V A +    PR +S  
Sbjct: 277 RLR--KPLDFETKKSYTLKVEAANIHIDPRFSSRG 309

>2a62_A Cadherin-8; extracellular domain, homodimer, calcium binding, adhesion; 4.50A {Mus musculus} Length = 322

 Score = 78.9 bits (195), Expect = 1e-16
 Identities = 44/187 (23%), Positives = 69/187 (36%), Gaps = 23/187 (12%)

Query: 56  ENLPVNYVLLTVT-TNKPR-DLRVKYWLSND-YGERFSISRQ-GDISLMQCLDYETEDSY 111
           E      +L+    T+      ++KY LS D  G  F I+   GDI  ++ LD E +  Y
Sbjct: 12  EFSGPEPILVGRLHTDLDPGSKKIKYILSGDGAGTIFQINDITGDIHAIKRLDREEKAEY 71

Query: 112 RFTVYATD----TLMTTSATVNISVVNVNDWDPRFRYPQYELFLPHIPLADLTPGSVIGK 167
             T  A D      +   +   I V ++ND  P F    Y   +P         G+ +  
Sbjct: 72  TLTAQAVDFETNKPLEPPSEFIIKVQDINDNAPEFLNGPYHATVPE----MSILGTSVTN 127

Query: 168 VEAADGDKGD-----RVTLSLRGPYEKMFSIN-DSGHISIVDLSAL---NTSTIQLVVVA 218
           V A D D        ++  S+    +  FSI  ++  I    L  +         +V+ A
Sbjct: 128 VTATDADDPVYGNSAKLVYSILEG-QPYFSIEPETAIIKTA-LPNMDREAKEEYLVVIQA 185

Query: 219 TDTGNPP 225
            D G   
Sbjct: 186 KDMGGHS 192

>3k5r_A Cadherin 13; mouse, structural protein; 2.00A {Mus musculus} PDB: 3k5s_A Length = 218

 Score = 85.9 bits (213), Expect = 1e-19
 Identities = 44/213 (20%), Positives = 75/213 (35%), Gaps = 34/213 (15%)

Query: 50  YSVSALEN--LPVNYVLLTVTTNKPRDLRVKYWLS-----NDYGERFSISRQ-GDISLMQ 101
             +   EN   P    +  V  +  R    K+ L+      D    F I+   G +S+ +
Sbjct: 6   SPILIPENQRQPFPRDVGKVV-DSDRPEGSKFRLTGKGVDQDPKGTFRINENTGSVSVTR 64

Query: 102 CLDYETEDSYRFTVYATDT---LMTTSATVNISVVNVNDWDPRFRYPQYELFLPHIPLAD 158
            LD ET  +Y+  V  TD     +     + + V++ ND  P FR   Y   +       
Sbjct: 65  TLDRETIATYQLYVETTDASGKTLEGPVPLEVIVIDQNDNRPIFREGPYIGHVME----G 120

Query: 159 LTPGSVIGKVEAADGDKGD----RVTLSL-----RGPYEKMFSIN-DSGHISIVDLSA-- 206
              G+ + ++ A D D        +  ++       P   MF I+ + G I  V   A  
Sbjct: 121 SPTGTTVMRMTAFDADDPATDNALLRYNIRQQTPDKPSPNMFYIDPEKGDIVTVVSPALL 180

Query: 207 ----LNTSTIQLVVVATDTG--NPPRQASVPAI 233
               L     +L++ A D    +     +  A 
Sbjct: 181 DRETLENPKYELIIEAQDMAGLDVGLTGTATAT 213

>3k5r_A Cadherin 13; mouse, structural protein; 2.00A {Mus musculus} PDB: 3k5s_A Length = 218

 Score = 48.9 bits (117), Expect = 6e-07
 Identities = 23/113 (20%), Positives = 40/113 (35%), Gaps = 27/113 (23%)

Query: 44  QFSKNEYSVSALENLPVNYVLLTVTTNKPRDL--------RVKYWLSNDYGER-----FS 90
            F +  Y    +E  P    ++ +T     D          ++Y +     ++     F 
Sbjct: 107 IFREGPYIGHVMEGSPTGTTVMRMTA---FDADDPATDNALLRYNIRQQTPDKPSPNMFY 163

Query: 91  ISRQ-GDISLMQ---CLDYETED--SYRFTVYATD-----TLMTTSATVNISV 132
           I  + GDI  +     LD ET +   Y   + A D       +T +AT  I +
Sbjct: 164 IDPEKGDIVTVVSPALLDRETLENPKYELIIEAQDMAGLDVGLTGTATATIVI 216

>2yqg_A Desmoglein-2, HDGC; cadherin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 123

 Score = 69.3 bits (170), Expect = 9e-15
 Identities = 18/107 (16%), Positives = 42/107 (39%), Gaps = 11/107 (10%)

Query: 47  KNEYSVSALENLPVNYVLLTVTTNKPRDL--RVKYWLS-----NDYGERFSISRQ-GDIS 98
               ++   E+L     +  + ++   +   ++ Y  +           F  ++  G+++
Sbjct: 14  TAPVALREGEDLSKKNPIAKIHSDLAEERGLKITYKYTGKGITEPPFGIFVFNKDTGELN 73

Query: 99  LMQCLDYETEDSYRFTVYATDT---LMTTSATVNISVVNVNDWDPRF 142
           +   LD E    +  T YA D     +     + I V+++ND +P F
Sbjct: 74  VTSILDREETPFFLLTGYALDARGNNVEKPLELRIKVLDINDNEPVF 120

>2yqg_A Desmoglein-2, HDGC; cadherin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 123

 Score = 40.0 bits (94), Expect = 2e-04
 Identities = 18/85 (21%), Positives = 32/85 (37%), Gaps = 14/85 (16%)

Query: 158 DLTPGSVIGKVEAADGDKGD--RVTLSLRG-----PYEKMFSIN-DSGHISIVDLSAL-- 207
           DL+  + I K+  +D  +    ++T    G     P   +F  N D+G +++   S L  
Sbjct: 24  DLSKKNPIAKI-HSDLAEERGLKITYKYTGKGITEPPFGIFVFNKDTGELNV--TSILDR 80

Query: 208 -NTSTIQLVVVATDTGNPPRQASVP 231
             T    L   A D      +  + 
Sbjct: 81  EETPFFLLTGYALDARGNNVEKPLE 105

>2yst_A Protocadherin-7; BH-PCDH, beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 119

 Score = 69.0 bits (170), Expect = 1e-14
 Identities = 25/107 (23%), Positives = 42/107 (39%), Gaps = 16/107 (14%)

Query: 44  QFSKNEYSVSALENLPVNYVLLTVTTNKPRDL------RVKYWLSN---DYGERFSI-SR 93
           +F K+ Y     EN      +L +      DL      +++Y              +   
Sbjct: 13  RFEKSVYEADLAENSAPGTPILQLRA---ADLDVGVNGQIEYVFGAATESVRRLLRLDET 69

Query: 94  QGDISLMQCLDYETEDSYRFTVYATD---TLMTTSATVNISVVNVND 137
            G +S++  +D E  +  RFTV A D      T  ATV +++ + ND
Sbjct: 70  SGWLSVLHRIDREEVNQLRFTVMARDRGQPPKTDKATVVLNIKDEND 116

>2yst_A Protocadherin-7; BH-PCDH, beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 119

 Score = 45.5 bits (109), Expect = 2e-06
 Identities = 28/109 (25%), Positives = 47/109 (43%), Gaps = 15/109 (13%)

Query: 130 ISVVNVNDWDPRFRYPQYELFLPHIPLADLTPGSVIGKVEAADGDKGD--RVTLSLRGPY 187
            S  + ND  PRF    YE  L      +  PG+ I ++ AAD D G   ++        
Sbjct: 2   SSGSSGNDNSPRFEKSVYEADLAE----NSAPGTPILQLRAADLDVGVNGQIEYVFGAAT 57

Query: 188 EK---MFSIN-DSGHISIVDLSALN---TSTIQLVVVATDTGNPPRQAS 229
           E    +  ++  SG +S+  L  ++    + ++  V+A D G PP+   
Sbjct: 58  ESVRRLLRLDETSGWLSV--LHRIDREEVNQLRFTVMARDRGQPPKTDK 104

>1ncg_A N-cadherin; cell adhesion protein; 2.10A {Mus musculus} SCOP: b.1.6.1 PDB: 1nch_A 1nci_A Length = 110

 Score = 64.2 bits (157), Expect = 4e-13
 Identities = 20/102 (19%), Positives = 47/102 (46%), Gaps = 11/102 (10%)

Query: 52  VSALENLPVNYV--LLTVTTNKPRDLRVKYWLSNDYGER-----FSISRQ-GDISLMQCL 103
           ++  EN    +   L+ + + + ++L ++Y ++    ++     F I+   G +S+ + L
Sbjct: 9   INLPENSRGPFPQELVRIRSGRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPL 68

Query: 104 DYETEDSYRFTVYATDT---LMTTSATVNISVVNVNDWDPRF 142
           D E    +    +A D     +     + I+V+++ND  P F
Sbjct: 69  DRELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEF 110

>1ncg_A N-cadherin; cell adhesion protein; 2.10A {Mus musculus} SCOP: b.1.6.1 PDB: 1nch_A 1nci_A Length = 110

 Score = 39.6 bits (93), Expect = 2e-04
 Identities = 14/82 (17%), Positives = 25/82 (30%), Gaps = 13/82 (15%)

Query: 161 PGSVIGKVEAADGDKGD--RVTLSLRGPY-----EKMFSIN-DSGHISIVDLSAL---NT 209
            G    ++      +     +  S+ GP        +F IN  SG +S+     L     
Sbjct: 16  RGPFPQELVRIRSGRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSV--TKPLDRELI 73

Query: 210 STIQLVVVATDTGNPPRQASVP 231
           +   L   A D      +  + 
Sbjct: 74  ARFHLRAHAVDINGNQVENPID 95

>2ee0_A Protocadherin-9; Ca domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 114

 Score = 63.6 bits (156), Expect = 6e-13
 Identities = 25/105 (23%), Positives = 43/105 (40%), Gaps = 15/105 (14%)

Query: 44  QFSKNEYSVSALENLPVNYVLLTVTTNKPRDL------RVKYWLSNDYGER----FSI-S 92
            F + +  V   EN PV   ++ +      D        ++Y             F++ +
Sbjct: 13  VFKEGQVEVHIPENAPVGTSVIQLHA---TDADIGSNAEIRYIFGAQVAPATKRLFALNN 69

Query: 93  RQGDISLMQCLDYETEDSYRFTVYATDT-LMTTSATVNISVVNVN 136
             G I++ + LD E    ++ TV A+D       ATV I+V +VN
Sbjct: 70  TTGLITVQRSLDREETAIHKVTVLASDGSSTPARATVTINVTDVN 114

>2ee0_A Protocadherin-9; Ca domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 114

 Score = 43.2 bits (103), Expect = 1e-05
 Identities = 25/111 (22%), Positives = 53/111 (47%), Gaps = 16/111 (14%)

Query: 130 ISVVNVNDWDPRFRYPQYELFLPHIPLADLTPGSVIGKVEAADGDKGD--RVTLSLRGP- 186
            S  + ND  P F+  Q E+ +P     +   G+ + ++ A D D G    +        
Sbjct: 2   SSGSSGNDNRPVFKEGQVEVHIPE----NAPVGTSVIQLHATDADIGSNAEIRYIFGAQV 57

Query: 187 ---YEKMFSIN-DSGHISIVDLSALN---TSTIQLVVVATDTGNPPRQASV 230
               +++F++N  +G I++    +L+   T+  ++ V+A+D  + P +A+V
Sbjct: 58  APATKRLFALNNTTGLITV--QRSLDREETAIHKVTVLASDGSSTPARATV 106

>2omz_B Epithelial-cadherin; leucine-rich-repeat, nvasion protein, IG-like domain, adhesi protein, cell invasion-cell adhesion complex; 1.60A {Homo sapiens} SCOP: b.1.6.1 PDB: 2omt_B 2omu_B 2omv_B 1o6s_B 2omy_B 2omx_B 3ff8_A 3ff7_A 2omw_B Length = 105

 Score = 59.7 bits (145), Expect = 2e-11
 Identities = 20/100 (20%), Positives = 40/100 (40%), Gaps = 11/100 (11%)

Query: 44  QFSKNEYSVSALENLPVNYV--LLTVTTNKPRDLRVKYWLS-----NDYGERFSISRQ-G 95
             S     +S  EN    +   L+ + +NK ++ +V Y ++           F I R+ G
Sbjct: 3   LGSWVIPPISCPENEKGPFPKNLVQIKSNKDKEGKVFYSITGQGADTPPVGVFIIERETG 62

Query: 96  DISLMQCLDYETEDSYRFTVYATDT---LMTTSATVNISV 132
            + + + LD E   +Y    +A  +    +     + I+V
Sbjct: 63  WLKVTEPLDRERIATYTLFSHAVSSNGNAVEDPMEILITV 102

>1zxk_A Cadherin-8; strand dimer, cell adhesion; 2.00A {Mus musculus} PDB: 2a4c_A Length = 98

 Score = 53.2 bits (128), Expect = 3e-09
 Identities = 24/91 (26%), Positives = 35/91 (38%), Gaps = 9/91 (9%)

Query: 51  SVSALENLPVNYVLLTVTTNKPRDL---RVKYWLSNDY-GERFSISRQ-GDISLMQCLDY 105
            +  LE       +L    +   D    ++KY LS D  G  F I+   GDI  ++ LD 
Sbjct: 6   QMFVLEEFSGPEPILVGRLHTDLDPGSKKIKYILSGDGAGTIFQINDITGDIHAIKRLDR 65

Query: 106 ETEDSYRFTVYATD----TLMTTSATVNISV 132
           E +  Y  T  A D      +   +   I V
Sbjct: 66  EEKAEYTLTAQAVDFETNKPLEPPSEFIIKV 96

>1zvn_A Mn-cadherin; strand dimer, ----; 2.16A {Gallus gallus} Length = 99

 Score = 52.0 bits (125), Expect = 6e-09
 Identities = 23/91 (25%), Positives = 30/91 (32%), Gaps = 9/91 (9%)

Query: 51  SVSALENLPVNYVLLTVTTNKPRDL---RVKYWLSNDY-GERFSISRQ-GDISLMQCLDY 105
               LE       L     +   D     +KY LS +  G  F+I    GDI  +Q LD 
Sbjct: 7   QFFVLEEYTGTDPLYVGKLHSDMDRGDGSIKYILSGEGAGIVFTIDDTTGDIHAIQRLDR 66

Query: 106 ETEDSYRFTVYATD----TLMTTSATVNISV 132
           E    Y     A D      M   +   I +
Sbjct: 67  EERSQYTLRAQALDRRTGRPMEPESEFIIKI 97

>3k6d_A T-cadherin; cell adhesion; 1.80A {Xenopus laevis} PDB: 2v37_A Length = 99

 Score = 48.9 bits (117), Expect = 8e-08
 Identities = 23/95 (24%), Positives = 37/95 (38%), Gaps = 12/95 (12%)

Query: 50  YSVSALENL--PVNYVLLTVTTNKPRDLRVKYWLS-----NDYGERFSISRQ-GDISLMQ 101
            S+S  EN   P   ++  V  +  R    K  L       +    F I+   G++S+ +
Sbjct: 5   PSISIPENQRIPFPKIVGRVVVSD-RIPGSKIKLYGKGVDQEPKGIFKINENSGEVSVTK 63

Query: 102 CLDYETEDSYRFTVYATDT---LMTTSATVNISVV 133
            LD E   SY+  V  TD     +     + I V+
Sbjct: 64  ALDREAIPSYQLQVETTDENGKTIEGPVDLEILVI 98

>3k6d_A T-cadherin; cell adhesion; 1.80A {Xenopus laevis} PDB: 2v37_A Length = 99

 Score = 39.7 bits (93), Expect = 2e-04
 Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 9/77 (11%)

Query: 162 GSVIGKVEAADGDKGDRVTLSLRG---PYEKMFSIN-DSGHISIVDLSALN---TSTIQL 214
             ++G+V  +D   G ++ L  +G     + +F IN +SG +S+    AL+     + QL
Sbjct: 18  PKIVGRVVVSDRIPGSKIKLYGKGVDQEPKGIFKINENSGEVSV--TKALDREAIPSYQL 75

Query: 215 VVVATDTGNPPRQASVP 231
            V  TD      +  V 
Sbjct: 76  QVETTDENGKTIEGPVD 92

>3k6i_A T-cadherin; cell adhesion, alternative splicing, calcium, cell membrane, cleavage on PAIR of basic residues, glycoprotein, GPI-anchor, lipoprotein; 1.13A {Gallus gallus} Length = 99

 Score = 48.2 bits (115), Expect = 2e-07
 Identities = 23/94 (24%), Positives = 37/94 (39%), Gaps = 12/94 (12%)

Query: 50  YSVSALENL--PVNYVLLTVTTNKPRDLRVKYWLS-----NDYGERFSISRQ-GDISLMQ 101
             +   EN   P    +  V  ++      K+ LS      D    F I+   GD+S+ +
Sbjct: 5   TPILIPENQRPPFPRSVGKVIRSEG-TEGAKFRLSGKGVDQDPKGIFRINEISGDVSVTR 63

Query: 102 CLDYETEDSYRFTVYATDT---LMTTSATVNISV 132
            LD E   +Y   V  TD    ++     ++ISV
Sbjct: 64  PLDREAIANYELEVEVTDLSGKIIDGPVRLDISV 97

>3k6i_A T-cadherin; cell adhesion, alternative splicing, calcium, cell membrane, cleavage on PAIR of basic residues, glycoprotein, GPI-anchor, lipoprotein; 1.13A {Gallus gallus} Length = 99

 Score = 37.8 bits (88), Expect = 5e-04
 Identities = 19/77 (24%), Positives = 31/77 (40%), Gaps = 9/77 (11%)

Query: 162 GSVIGKVEAADGDKGDRVTLS---LRGPYEKMFSIN-DSGHISIVDLSAL---NTSTIQL 214
              +GKV  ++G +G +  LS   +    + +F IN  SG +S+     L     +  +L
Sbjct: 18  PRSVGKVIRSEGTEGAKFRLSGKGVDQDPKGIFRINEISGDVSV--TRPLDREAIANYEL 75

Query: 215 VVVATDTGNPPRQASVP 231
            V  TD         V 
Sbjct: 76  EVEVTDLSGKIIDGPVR 92

>3k6f_A T-cadherin; cell adhesion, calcium, cell membrane, cleavage on PAIR of basic residues, glycoprotein, GPI-anchor, lipoprotein, membrane; 1.81A {Mus musculus} Length = 100

 Score = 46.6 bits (111), Expect = 6e-07
 Identities = 19/93 (20%), Positives = 35/93 (37%), Gaps = 10/93 (10%)

Query: 50  YSVSALENLPVNYVLLTVTTNKPRDLRVKYWLS-----NDYGERFSISRQ-GDISLMQCL 103
             +   +  P    +  V  +  R    K+ L+      D    F I+   G +S+ + L
Sbjct: 8   ILIPENQRQPFPRDVGKVV-DSDRPEGSKFRLTGKGVDQDPKGTFRINENTGSVSVTRTL 66

Query: 104 DYETEDSYRFTVYATDT---LMTTSATVNISVV 133
           D ET  +Y+  V  TD     +     + + V+
Sbjct: 67  DRETIATYQLYVETTDASGKTLEGPVPLEVIVI 99

>3k6f_A T-cadherin; cell adhesion, calcium, cell membrane, cleavage on PAIR of basic residues, glycoprotein, GPI-anchor, lipoprotein, membrane; 1.81A {Mus musculus} Length = 100

 Score = 39.7 bits (93), Expect = 2e-04
 Identities = 20/81 (24%), Positives = 33/81 (40%), Gaps = 9/81 (11%)

Query: 158 DLTPGSVIGKVEAADGDKGDRVTLS---LRGPYEKMFSIN-DSGHISIVDLSAL---NTS 210
                  +GKV  +D  +G +  L+   +    +  F IN ++G +S+     L     +
Sbjct: 15  RQPFPRDVGKVVDSDRPEGSKFRLTGKGVDQDPKGTFRINENTGSVSV--TRTLDRETIA 72

Query: 211 TIQLVVVATDTGNPPRQASVP 231
           T QL V  TD      +  VP
Sbjct: 73  TYQLYVETTDASGKTLEGPVP 93

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.9 bits (100), Expect = 2e-04
 Identities = 46/323 (14%), Positives = 84/323 (26%), Gaps = 131/323 (40%)

Query: 5   DDFLQP-ITLVVRAIQYDNQDRYALATLIVSKAGTSLRELQ-FSKNEYSVS--------- 53
           ++ L+     ++  I+ + +    +  + + +      + Q F+K  Y+VS         
Sbjct: 84  EEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAK--YNVSRLQPYLKLR 141

Query: 54  -ALENL-PVNYVLL--------TVTTNKP-RDLRVK-------YWLSNDYGERFS----- 90
            AL  L P   VL+        T          +V+       +WL+       S     
Sbjct: 142 QALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLN--LKNCNSPETVL 199

Query: 91  -----ISRQGDISLMQCLDYETEDSYRF------------------------------TV 115
                +  Q D +     D+ +    R                                 
Sbjct: 200 EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAW 259

Query: 116 YATD----TLMTTSATVNISVVN-----------VNDWDPRFRYPQ-YELF--------- 150
            A +     L+TT       V +           ++         +   L          
Sbjct: 260 NAFNLSCKILLTTR---FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQ 316

Query: 151 -LPH-----IPLADLTPGSVIGKV-----------EAADGDKGDRV-TLSLRG--PYE-- 188
            LP       P       S+I +            +  + DK   +   SL    P E  
Sbjct: 317 DLPREVLTTNPRRL----SIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYR 372

Query: 189 ---KMFSI-NDSGHISIVDLSAL 207
                 S+   S HI  + LS +
Sbjct: 373 KMFDRLSVFPPSAHIPTILLSLI 395

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	383
2a62_A	322	Cadherin-8; extracellular domain, homodimer, calci	100.0
1q55_A	880	EP-cadherin, C-cadherin; trans interaction, desmos	100.0
3q2v_A	550	Cadherin-1; cell adhesion, calcium binding; HET: M	100.0
3ubh_A	419	Neural-cadherin; cell adhesion; 2.70A {Drosophila	100.0
3ubf_A	316	Neural-cadherin; cell adhesion; 2.50A {Drosophila	100.0
1l3w_A	546	EP-cadherin, C-cadherin; cell adhesion, calcium bi	100.0
3q2w_A	559	Cadherin-2; cell adhesion, calcium binding; HET: M	100.0
3q2w_A	559	Cadherin-2; cell adhesion, calcium binding; HET: M	100.0
1l3w_A	546	EP-cadherin, C-cadherin; cell adhesion, calcium bi	100.0
3q2v_A	550	Cadherin-1; cell adhesion, calcium binding; HET: M	100.0
1q55_A	880	EP-cadherin, C-cadherin; trans interaction, desmos	100.0
3ubh_A	419	Neural-cadherin; cell adhesion; 2.70A {Drosophila	100.0
3mvs_A	210	Cadherin-23, otocadherin; adhesion, extracellular	100.0
2x2u_A	246	Proto-oncogene tyrosine-protein kinase receptor RE	100.0
2a4e_A	215	Cadherin-11; dimer, calcium binding, cell adhesion	100.0
3qrb_A	213	Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus mu	100.0
3k5r_A	218	Cadherin 13; mouse, structural protein; 2.00A {Mus	100.0
2qvi_A	215	Cadherin-2; beta barrel, strand SWAP, domain SWAP,	100.0
3ppe_A	203	Vascular endothelial cadherin; extracellular cadhe	100.0
3lnd_A	207	CDH6 protein, cadherin 6; cell adhesion, cell memb	99.98
2a62_A	322	Cadherin-8; extracellular domain, homodimer, calci	99.97
2a4e_A	215	Cadherin-11; dimer, calcium binding, cell adhesion	99.96
4apx_B	242	Protocadherin-15, otocadherin; cell adhesion, hear	99.95
2x2u_A	246	Proto-oncogene tyrosine-protein kinase receptor RE	99.95
3ubf_A	316	Neural-cadherin; cell adhesion; 2.50A {Drosophila	99.95
3mvs_A	210	Cadherin-23, otocadherin; adhesion, extracellular	99.95
3ppe_A	203	Vascular endothelial cadherin; extracellular cadhe	99.94
3qrb_A	213	Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus mu	99.94
3k5r_A	218	Cadherin 13; mouse, structural protein; 2.00A {Mus	99.94
2qvi_A	215	Cadherin-2; beta barrel, strand SWAP, domain SWAP,	99.93
2yst_A	119	Protocadherin-7; BH-PCDH, beta-sandwich, structura	99.93
3lnd_A	207	CDH6 protein, cadherin 6; cell adhesion, cell memb	99.92
2ee0_A	114	Protocadherin-9; Ca domain, structural genomics, N	99.9
4apx_B	242	Protocadherin-15, otocadherin; cell adhesion, hear	99.88
2yst_A	119	Protocadherin-7; BH-PCDH, beta-sandwich, structura	99.84
2yqg_A	123	Desmoglein-2, HDGC; cadherin, structural genomics,	99.83
2ee0_A	114	Protocadherin-9; Ca domain, structural genomics, N	99.8
1ncg_A	110	N-cadherin; cell adhesion protein; 2.10A {Mus musc	99.79
1wyj_A	125	Protocadherin beta 14; SS bond, structural genomic	99.78
3k6d_A	99	T-cadherin; cell adhesion; 1.80A {Xenopus laevis}	99.67
3k6f_A	100	T-cadherin; cell adhesion, calcium, cell membrane,	99.66
3k6i_A	99	T-cadherin; cell adhesion, alternative splicing, c	99.65
2omz_B	105	Epithelial-cadherin; leucine-rich-repeat, nvasion	99.62
1zvn_A	99	Mn-cadherin; strand dimer, ----; 2.16A {Gallus gal	99.61
1zxk_A	98	Cadherin-8; strand dimer, cell adhesion; 2.00A {Mu	99.59
2yqg_A	123	Desmoglein-2, HDGC; cadherin, structural genomics,	99.56
1wuz_A	103	Pcdha4 protein, CNR-EC1; cadherin, heteronuclear p	99.49
3k6d_A	99	T-cadherin; cell adhesion; 1.80A {Xenopus laevis}	99.42
1ncg_A	110	N-cadherin; cell adhesion protein; 2.10A {Mus musc	99.42
3k6f_A	100	T-cadherin; cell adhesion, calcium, cell membrane,	99.4
3k6i_A	99	T-cadherin; cell adhesion, alternative splicing, c	99.39
1zvn_A	99	Mn-cadherin; strand dimer, ----; 2.16A {Gallus gal	99.38
1zxk_A	98	Cadherin-8; strand dimer, cell adhesion; 2.00A {Mu	99.37
2omz_B	105	Epithelial-cadherin; leucine-rich-repeat, nvasion	99.26
1wyj_A	125	Protocadherin beta 14; SS bond, structural genomic	99.11
1wuz_A	103	Pcdha4 protein, CNR-EC1; cadherin, heteronuclear p	98.38
1op4_A	159	Neural-cadherin; beta sandwich, cadherin-like doma	95.53
2yhg_A	437	SDE_182CT, cellulose-binding protein; hydrolase, g	95.13
1op4_A	159	Neural-cadherin; beta sandwich, cadherin-like doma	94.5
3pdd_A	190	Glycoside hydrolase, family 9; CBHA, beta-sandwich	93.1
3rb5_A	298	Na/Ca exchange protein; CBD12, calcium binding and	91.34
2klu_A	70	T-cell surface glycoprotein CD4; cell membrane, di	91.12
2ks1_B	44	Epidermal growth factor receptor; ERBB1, ERBB2, tr	91.09
2jwa_A	44	Receptor tyrosine-protein kinase ERBB-2; transmemb	90.26
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	84.98
3pdd_A	190	Glycoside hydrolase, family 9; CBHA, beta-sandwich	83.54
2k9y_A	41	Ephrin type-A receptor 2; receptor tyrosine kinase	82.83

>2a62_A Cadherin-8; extracellular domain, homodimer, calcium binding, adhesion; 4.50A {Mus musculus}

Probab=100.00  E-value=2.8e-42  Score=333.47  Aligned_cols=229  Identities=21%  Similarity=0.319  Sum_probs=207.2

Q ss_pred             CCcCCCCeEEEEEEEEECCC-CCceEEEEEEEEEeeCCCCCCeeecCcEEEEEECCCCCCcEEEEEEeEeCCC------C
Q psy4697           3 NEDDFLQPITLVVRAIQYDN-QDRYALATLIVSKAGTSLRELQFSKNEYSVSALENLPVNYVLLTVTTNKPRD------L   75 (383)
Q Consensus         3 ~DrE~~~~y~l~V~a~D~g~-~~~~s~~~v~V~V~DvNdn~P~F~~~~y~~~V~En~~~gt~v~~v~A~D~D~------~   75 (383)
                      .|||..+.|.|+|+|+|.+. +++++.++|.|.|.|+|||+|.|.+..|.++|+||.++|+.|+++.|+|+|.      +
T Consensus        63 LDrE~~~~y~l~v~a~D~~~~~~~~~~~~v~I~V~DvNDn~P~F~~~~y~~~v~E~~~~gt~v~~v~A~D~D~~~~G~n~  142 (322)
T 2a62_A           63 LDREEKAEYTLTAQAVDFETNKPLEPPSEFIIKVQDINDNAPEFLNGPYHATVPEMSILGTSVTNVTATDADDPVYGNSA  142 (322)
T ss_dssp             CCTTTCSBCCEEEEEECTTTCSEEEEEEEECEECCCCSCSCBCCSSSEEEEEECSSCCTTCBCCCCCCCBCSCSSSTTSS
T ss_pred             CCcccccEEEEEEEEEECCCCCcccceEEEEEEEEecCCCCCccCCCceEEEEeCCCCCCCEEEEEEEEeCCCCCCCccE
Confidence            48999999999999999875 4678889999999999999999999999999999999999999999999992      6


Q ss_pred             eeEEEEecCCCCCEEEcC-cccEEEc-ccCCcccCcEEEEEEEEecCC-----ceeEEEEEEEEeecCCCCCcccCCcee
Q psy4697          76 RVKYWLSNDYGERFSISR-QGDISLM-QCLDYETEDSYRFTVYATDTL-----MTTSATVNISVVNVNDWDPRFRYPQYE  148 (383)
Q Consensus        76 ~v~Ysi~~~~~~~F~Id~-tG~I~~~-~~LD~E~~~~y~~~V~A~D~~-----~~s~~tV~I~V~DvNDn~P~f~~~~~~  148 (383)
                      .++|+|.+.. .+|.|++ +|.|++. +.||||....|.|.|.|+|+|     ++++++|+|+|.|+|||+|+|..+.|.
T Consensus       143 ~i~Y~i~~~~-~~F~Id~~tG~i~~~~~~LD~E~~~~y~l~V~a~D~g~p~~~~s~~~~v~I~V~DvNDn~P~F~~~~y~  221 (322)
T 2a62_A          143 KLVYSILEGQ-PYFSIEPETAIIKTALPNMDREAKEEYLVVIQAKDMGGHSGGLSGTTTLTVTLTDVNDNPPKFAQSLYH  221 (322)
T ss_dssp             CEEEEEEECT-TTEEECTTTCCEEECSSCCCGGGCSEEEEEEEEEESCSSSSCCBCCEEEEEEECCCCCCCCCCSCSEEE
T ss_pred             EEEEEEccCC-CCEEEecCCCEEEecccCCCcccCCeEEEEEEEEECCCCCCCceeEEEEEEEEEecCCCCCeecCCCce
Confidence            8999998653 5899996 9999998 999999999999999999965     678999999999999999999999999


Q ss_pred             EEEeccCCCCCCCCceEEEEEeeeCCCCC--eEEEEEe-CCCCCCEEEc----C-CCcEEEec-cCCCCcceEEEEEEEe
Q psy4697         149 LFLPHIPLADLTPGSVIGKVEAADGDKGD--RVTLSLR-GPYEKMFSIN----D-SGHISIVD-LSALNTSTIQLVVVAT  219 (383)
Q Consensus       149 ~~v~~~~~e~~~~g~~v~~v~A~D~D~g~--~i~ysi~-~~~~~~F~i~----~-tG~i~l~~-~~~~~~~~y~L~V~a~  219 (383)
                      +.++    |+.++|+.|++|.|+|+|.|.  .++|+|. ++..+.|.|+    . +|.|++.+ ++++....|.|.|.|+
T Consensus       222 ~~v~----En~~~gt~v~~v~A~D~D~g~n~~i~Y~i~~g~~~~~F~I~~d~~~~tG~i~~~~~LD~E~~~~y~l~V~A~  297 (322)
T 2a62_A          222 FSVP----EDVVLGTAIGRVKANDQDIGENAQSSYDIIDGDGTALFEITSDAQAQDGVIRLRKPLDFETKKSYTLKVEAA  297 (322)
T ss_dssp             EEEC----SCCSSCCEEEEEECCCSSCGGGTCCEEEEC---CCSSBCCBCCTTTSEEEEEBCSCCCCSSCCEEEEEEEEE
T ss_pred             eEeE----CCCCCCcEEEEEEEEeCCCCCCceEEEEEECCCCCCcEEEeccCCCceEEEEECCcCCcccCCeEEEEEEEE
Confidence            9999    999999999999999999985  6999996 5667899998    3 79998866 4778889999999999


Q ss_pred             eCCCCC-------ceeEEEEEEEE
Q psy4697         220 DTGNPP-------RQASVPAIMHF  236 (383)
Q Consensus       220 D~g~p~-------~sst~tv~I~v  236 (383)
                      |+|.|+       ++++++|+|.|
T Consensus       298 D~g~pp~~~~~~~~s~~~~V~I~V  321 (322)
T 2a62_A          298 NIHIDPRFSSRGPFKDTATVKIVV  321 (322)
T ss_dssp             CCCSSCTTSSCCCCCCCCEEEEEE
T ss_pred             ECCCCCccccCCCcccEEEEEEEE
Confidence            999886       46788898887

>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction, adhesion, structural protein; HET: NAG NDG; 30.00A {Mus musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A*

Probab=100.00  E-value=1.6e-42  Score=374.62  Aligned_cols=233  Identities=19%  Similarity=0.276  Sum_probs=214.1

Q ss_pred             CCcCCCCeEEEEEEEEECCCCCceEEEEEEEEEeeCCCCCCeeecCcEEEEEECCCCCCcEEEEEEeEeCC--C---Cee
Q psy4697           3 NEDDFLQPITLVVRAIQYDNQDRYALATLIVSKAGTSLRELQFSKNEYSVSALENLPVNYVLLTVTTNKPR--D---LRV   77 (383)
Q Consensus         3 ~DrE~~~~y~l~V~a~D~g~~~~~s~~~v~V~V~DvNdn~P~F~~~~y~~~V~En~~~gt~v~~v~A~D~D--~---~~v   77 (383)
                      .|||..+.|.|+|+|+|.|.|+++++++|+|.|.|+|||+|+|.+..|.++|+|| ++|+.|++|.|+|+|  .   +.+
T Consensus       334 LDrE~~~~y~l~V~A~D~g~~~~s~~~~v~I~V~DvNDn~P~F~~~~y~~~V~En-~~gt~V~~v~A~D~D~~~g~n~~v  412 (880)
T 1q55_A          334 LDREKFPEYTLTVQATDLEGAGLSVEGKAIIQITDANDNAPIFDPKTYTALVPEN-EIGFEVQRLSVTDLDMPGTPAWQA  412 (880)
T ss_dssp             CCTTTCCEEEEEEEEEHHHHTSCEEECCEEEEEECCCCCCCCBSCSEEEEEEESS-SCCCEEEEECBCCCSCTTSTTSCE
T ss_pred             CCHHHcceeEEEEEEEECCCCCccceeEEEEEEEeccCCCCCccccceEEEeecC-CCCcEEEEEEEECCCCCCCCCceE
Confidence            4899999999999999999999999999999999999999999999999999999 999999999999999  2   789


Q ss_pred             EEEEecCCCCCEEEc-----CcccEEEcccCCcccCcEEEEEEEEecCC------ceeEEEEEEEEeecCCCCCcccCCc
Q psy4697          78 KYWLSNDYGERFSIS-----RQGDISLMQCLDYETEDSYRFTVYATDTL------MTTSATVNISVVNVNDWDPRFRYPQ  146 (383)
Q Consensus        78 ~Ysi~~~~~~~F~Id-----~tG~I~~~~~LD~E~~~~y~~~V~A~D~~------~~s~~tV~I~V~DvNDn~P~f~~~~  146 (383)
                      +|+|.++..++|.|+     .+|.|++.++||||....|.|+|.|+|++      ++++++|+|+|.|+|| +|+|..+.
T Consensus       413 ~Ysi~~~~~~~F~I~~d~~~~~G~i~~~~~LD~E~~~~y~l~V~A~D~~~~~~~~~sst~tV~I~V~DvND-~P~f~~~~  491 (880)
T 1q55_A          413 VYKIRVNEGGFFNITTDPESNQGILTTAKGLDFELRKQYVLQITVENAEPFSVPLPTSTATVTVTVEDVNE-APFFVPAV  491 (880)
T ss_dssp             ECCBSCCTTSCEEEEECTTTCCEEEEESSCCCCSSCCCEEEEECCEESSCCSSCCCCCCEEEEEEEECCCC-CCEESSCE
T ss_pred             EEEEecCCCceEEEEecCCCceEEEecccCCCcccCCcEEEEEEEEECCCCCCCCcceeEEEEEEEEeCCC-CCEEecCc
Confidence            999988667799994     37999999999999999999999999964      6789999999999999 99999999


Q ss_pred             eeEEEeccCCCCCCCCceEEEEEeeeCCCCC--eEEEEEeCCCCCCEEEcC-CCcEEEecc-CCCCc----ceEEEEEEE
Q psy4697         147 YELFLPHIPLADLTPGSVIGKVEAADGDKGD--RVTLSLRGPYEKMFSIND-SGHISIVDL-SALNT----STIQLVVVA  218 (383)
Q Consensus       147 ~~~~v~~~~~e~~~~g~~v~~v~A~D~D~g~--~i~ysi~~~~~~~F~i~~-tG~i~l~~~-~~~~~----~~y~L~V~a  218 (383)
                      |.+.|+    |+.++|+.|++|.|+|+|.|.  .++|+|.++..++|.|++ +|.|++.+. +++..    ..|.|.|.|
T Consensus       492 y~~~V~----En~~~Gt~V~~v~A~D~D~g~n~~v~Ysi~~~~~~~F~Id~~tG~I~~~~~LDrE~~~~~~~~y~l~V~A  567 (880)
T 1q55_A          492 SRVDVS----EDLSRGEKIISLVAQDPDKQQIQKLSYFIGNDPARWLTVNKDNGIVTGNGNLDRESEYVKNNTYTVIMLV  567 (880)
T ss_dssp             ECCCBC----TTCCSSEEEEECCEECCCTTCCCCEEEEECCCSSCCCEEETTTTEEEECSCCCTTSSSCCSSCCEEEEEE
T ss_pred             eEEEEe----CCCCCCCEEEEEEEEeCCCCCCCcEEEEECCCCCCCEEEeCCccEEEECCccCcccccCCCCEEEEEEEE
Confidence            999999    999999999999999999874  799999877778999997 999998764 66655    799999999


Q ss_pred             eeCCCCCceeEEEEEEEEeCCccc
Q psy4697         219 TDTGNPPRQASVPAIMHFPEAIVQ  242 (383)
Q Consensus       219 ~D~g~p~~sst~tv~I~v~~~~~~  242 (383)
                      +|+|.|+++++++|.|.| .++|+
T Consensus       568 ~D~g~p~~sst~tv~I~V-~DvND  590 (880)
T 1q55_A          568 TDDGVSVGTGTGTLILHV-LDVND  590 (880)
T ss_dssp             EECSSSCCCCCEEEECCB-CCCCC
T ss_pred             EECCCCCcEeEEEEEEEE-EeCCC
Confidence            999999999999999999 44444

>3q2v_A Cadherin-1; cell adhesion, calcium binding; HET: MAN; 3.40A {Mus musculus}

Probab=100.00  E-value=6.3e-41  Score=346.19  Aligned_cols=240  Identities=21%  Similarity=0.282  Sum_probs=222.9

Q ss_pred             CCcCCCCeEEEEEEEEECCCCCceEEEEEEEEEeeCCCCCCeeecCcEEEEEECCCCCCcEEEEEEeEeCCC---C--ee
Q psy4697           3 NEDDFLQPITLVVRAIQYDNQDRYALATLIVSKAGTSLRELQFSKNEYSVSALENLPVNYVLLTVTTNKPRD---L--RV   77 (383)
Q Consensus         3 ~DrE~~~~y~l~V~a~D~g~~~~~s~~~v~V~V~DvNdn~P~F~~~~y~~~V~En~~~gt~v~~v~A~D~D~---~--~v   77 (383)
                      .|||..+.|.|+|+|+|.|.++++++++|+|.|.|+|||+|+|.+..|.++|+|| ++|+.|+++.|+|+|.   +  .+
T Consensus       179 LDrE~~~~y~l~V~A~D~g~~~~s~t~~v~I~V~DvNDn~P~F~~~~y~~~V~En-~~g~~v~~v~a~D~D~~~n~~~~~  257 (550)
T 3q2v_A          179 LDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKDINDNAPVFNPSTYQGQVPEN-EVNARIATLKVTDDDAPNTPAWKA  257 (550)
T ss_dssp             CCTTTCSEEEEEEEEESGGGTSCCCEEEEEEEEECCSCSCCEESSSEEEEEEESS-CSSCCCEEECEECCSCTTSTTTCE
T ss_pred             CCcccCcEEEEEEEEEcCCCCCeeEEEEEEEEecccCCCCCEEecceeEEEEecC-CCCCEEEEEEEEECCCCCCCcEEE
Confidence            4899999999999999999999999999999999999999999999999999999 9999999999999996   2  47


Q ss_pred             EEEEecCCCCCEEEc----C-cccEEEcccCCcccCcEEEEEEEEecCC------ceeEEEEEEEEeecCCCCCcccCCc
Q psy4697          78 KYWLSNDYGERFSIS----R-QGDISLMQCLDYETEDSYRFTVYATDTL------MTTSATVNISVVNVNDWDPRFRYPQ  146 (383)
Q Consensus        78 ~Ysi~~~~~~~F~Id----~-tG~I~~~~~LD~E~~~~y~~~V~A~D~~------~~s~~tV~I~V~DvNDn~P~f~~~~  146 (383)
                      +|+|.++..++|.|+    . +|.|++.++||||....|.|.|+|+|++      ++++++|.|+|+|+|| +|.|..+.
T Consensus       258 ~ysi~~~~~~~F~i~~d~~~~tG~i~~~~~LD~E~~~~y~l~V~a~D~~~~~~~~~~~~~~v~I~V~DvND-~P~f~~~~  336 (550)
T 3q2v_A          258 VYTVVNDPDQQFVVVTDPTTNDGILKTAKGLDFEAKQQYILHVRVENEEPFEGSLVPSTATVTVDVVDVNE-APIFMPAE  336 (550)
T ss_dssp             EEEESSCSSCCEEEEECTTTCCEEEEESSCCCTTTCSEEEEEEEEEESSCCCSSCCCEEEEEEEEEECCCC-CCEESSSS
T ss_pred             EEEEEeCCCCcEEEEecCCCccEEEEecccCCccccceEEEEEEEEeCCCCCCCccceEEEEEEEEEecCC-CCeEcCcc
Confidence            799998778899996    4 9999999999999999999999999975      6889999999999999 99999999


Q ss_pred             eeEEEeccCCCCCCCCceEEEEEeeeCCCCC--eEEEEEeCCCCCCEEEcC-CCcEEEecc-CCCCc-----ceEEEEEE
Q psy4697         147 YELFLPHIPLADLTPGSVIGKVEAADGDKGD--RVTLSLRGPYEKMFSIND-SGHISIVDL-SALNT-----STIQLVVV  217 (383)
Q Consensus       147 ~~~~v~~~~~e~~~~g~~v~~v~A~D~D~g~--~i~ysi~~~~~~~F~i~~-tG~i~l~~~-~~~~~-----~~y~L~V~  217 (383)
                      |.+.++    |+.++|+.|+++.|+|+|.|.  .++|+|.++..++|.|++ +|.|++.+. +++..     ..|.|+|.
T Consensus       337 ~~~~v~----E~~~~gt~v~~v~A~D~D~g~n~~i~y~i~~~~~~~f~id~~tG~i~~~~~lDrE~~~~~~~~~y~l~V~  412 (550)
T 3q2v_A          337 RRVEVP----EDFGVGQEITSYTAREPDTFMDQKITYRIWRDTANWLEINPETGAIFTRAEMDREDAEHVKNSTYVALII  412 (550)
T ss_dssp             CEEEEE----TTCCSSCEEEECCEECCCCSTTCCCEEEEEECTTCCEEECTTTCEEEECSCCCTTCTTTCCSSEEEEEEE
T ss_pred             eEEEEe----cCCCCCCEEEEEeCCCCCCCCCCCEEEEEecCCCCcEEEeCCCcEEEECCccCcccccccCCCEEEEEEE
Confidence            999999    999999999999999999975  799999877778999997 999998764 66666     89999999


Q ss_pred             EeeCCCCCceeEEEEEEEEeCCcccCcccccC
Q psy4697         218 ATDTGNPPRQASVPAIMHFPEAIVQQASSKLN  249 (383)
Q Consensus       218 a~D~g~p~~sst~tv~I~v~~~~~~~~p~~~~  249 (383)
                      |+|+|.|+++++++|.|.| .++|+++|.+..
T Consensus       413 A~D~g~p~~s~~~~v~I~V-~DvNDn~P~~~~  443 (550)
T 3q2v_A          413 ATDDGSPIATGTGTLLLVL-LDVNDNAPIPEP  443 (550)
T ss_dssp             EECCSSSCCCEEEEEEEEE-ECCCCCCCEESC
T ss_pred             EEeCCCCcceeEEEEEEEE-EeCCCCCCcCcC
Confidence            9999999999999999999 789999998753

>3ubh_A Neural-cadherin; cell adhesion; 2.70A {Drosophila melanogaster}

Probab=100.00  E-value=1.4e-40  Score=332.91  Aligned_cols=227  Identities=24%  Similarity=0.351  Sum_probs=206.6

Q ss_pred             CCcCCCCeEEEEEEEEECCCC----CceEEEEEEEEEeeCCCCCCeeecCcEEEEEECCCCCCcEEEEEEeEeCCCCeeE
Q psy4697           3 NEDDFLQPITLVVRAIQYDNQ----DRYALATLIVSKAGTSLRELQFSKNEYSVSALENLPVNYVLLTVTTNKPRDLRVK   78 (383)
Q Consensus         3 ~DrE~~~~y~l~V~a~D~g~~----~~~s~~~v~V~V~DvNdn~P~F~~~~y~~~V~En~~~gt~v~~v~A~D~D~~~v~   78 (383)
                      .|+|...+|.|+|+|+|.|.+    .++++++++|.|.| |||+|.|.+..|.++|+||.++|+.|++|.|+|+|++.++
T Consensus       174 ld~e~~~~y~l~V~A~D~g~~~~~~~~~~t~~v~I~V~d-ndn~P~F~~~~y~~~v~En~~~gt~v~~v~A~D~dn~~i~  252 (419)
T 3ubh_A          174 DLFQLDMEYVLYVKAEDQNGKVDDRRFQSTPEERLSIVG-GKRAPQFYMPSYEAEIPENQKKDSDIISIKAKSFADREIR  252 (419)
T ss_dssp             SCCCBTCEEEEEEEEEEEEEEC--CCEEECCCEEEEEEE-SCCCCEESSSCEEEEEETTCCTTCEEEECCEECSSCCCCE
T ss_pred             cccccccEEEEEEEEEECCCCccCcccccceEEEEEEEC-CCCCCceecCeeEEEecCCCCCCcEEEEEEEecCCCCceE
Confidence            578889999999999998764    56888899999999 9999999999999999999999999999999999999999


Q ss_pred             EEEec--CCCCCEEEcC-cccEEEcccCCcccCc---EEEEEEEEec-C-CceeEEEEEEEEeecCCCCCcccCCceeE-
Q psy4697          79 YWLSN--DYGERFSISR-QGDISLMQCLDYETED---SYRFTVYATD-T-LMTTSATVNISVVNVNDWDPRFRYPQYEL-  149 (383)
Q Consensus        79 Ysi~~--~~~~~F~Id~-tG~I~~~~~LD~E~~~---~y~~~V~A~D-~-~~~s~~tV~I~V~DvNDn~P~f~~~~~~~-  149 (383)
                      |+|..  +..++|.|++ +|.|++.++||||...   .|.|+|.|+| + +++++++|.|+|+|+|||+|+|..+.|.. 
T Consensus       253 Ysi~~~~~~~~~F~I~~~tG~i~~~~~LD~E~~~~~~~y~l~V~a~dd~~~~s~~~~v~I~V~DvNDn~P~f~~~~~~~~  332 (419)
T 3ubh_A          253 YTLKAQGQGAGTFNIGPTSGIVKLAKELDFEDLRQPHVYSLIVTATEDSGGFSTSVDLTIRVTDVNDNAPKFELPDYQAH  332 (419)
T ss_dssp             EEEEESSSCCSSEEECTTTCEEEECSCCCTTCTTSCSEEEEEEEEECTTTSCEEEEEEEEEEECCCCCCCEESSSEEEEE
T ss_pred             EEEecCCCCCCcEEEECCCCEEEECcccCccccccccEEEEEEEEEeCCCCcEEEEEEEEEEEccCCCCCcccCCcceeE
Confidence            99963  5678999996 9999999999999865   7999999995 3 48899999999999999999999998886 


Q ss_pred             EEeccCCCCCCCCceEEEEEeeeCCCCC--eEEEEEeCCCCCCEEEcCCCcEEEecc-CCCC-cceEEEEEEEeeCCCCC
Q psy4697         150 FLPHIPLADLTPGSVIGKVEAADGDKGD--RVTLSLRGPYEKMFSINDSGHISIVDL-SALN-TSTIQLVVVATDTGNPP  225 (383)
Q Consensus       150 ~v~~~~~e~~~~g~~v~~v~A~D~D~g~--~i~ysi~~~~~~~F~i~~tG~i~l~~~-~~~~-~~~y~L~V~a~D~g~p~  225 (383)
                      .++    |+.++|+.|++|.|+|+|.|.  .++|+|.+   ++|.|+++|.|++.+. +++. ...|.|.|.|+|+|.|+
T Consensus       333 ~v~----E~~~~gt~v~~v~A~D~D~g~n~~v~Y~i~~---~~F~Id~~G~i~~~~~ld~E~~~~~y~l~V~a~D~G~p~  405 (419)
T 3ubh_A          333 NVD----EDIPLGTSILRVKAMDSDSGSNAEIEYLVSD---DHFAVDSNGIIVNNKQLDADNNNAYYEFIVTAKDKGEPP  405 (419)
T ss_dssp             EEE----TTCCTTCEEEECCEECSSCGGGGCEEEEESC---TTEEECTTCEEEECSCSSSSCTTCEEEEEEEEEECCSSC
T ss_pred             Eec----CCCCCCCEEEEEEEEeCCCCCCCEEEEEEcC---CcEEECCCeEEEECcccCcccCCceEEEEEEEEECCcCC
Confidence            799    999999999999999999986  69999963   4899999999998765 5665 57899999999999999


Q ss_pred             ceeEEEEEEEEe
Q psy4697         226 RQASVPAIMHFP  237 (383)
Q Consensus       226 ~sst~tv~I~v~  237 (383)
                      ++++++|.|.|.
T Consensus       406 ~sst~~v~I~v~  417 (419)
T 3ubh_A          406 KSGVATVRVYTK  417 (419)
T ss_dssp             CEEEEEEEEEEE
T ss_pred             ceeEEEEEEEEe
Confidence            999999999984

>3ubf_A Neural-cadherin; cell adhesion; 2.50A {Drosophila melanogaster} PDB: 3ubg_A

Probab=100.00  E-value=2.7e-40  Score=319.03  Aligned_cols=233  Identities=17%  Similarity=0.238  Sum_probs=199.9

Q ss_pred             CCcCC-----CCeEEEEEEEEECCCC-CceEEEEEEEEEeeCCCCCCeeecCc--EEEEEECCCCCCcEEEEEEeEeCCC
Q psy4697           3 NEDDF-----LQPITLVVRAIQYDNQ-DRYALATLIVSKAGTSLRELQFSKNE--YSVSALENLPVNYVLLTVTTNKPRD   74 (383)
Q Consensus         3 ~DrE~-----~~~y~l~V~a~D~g~~-~~~s~~~v~V~V~DvNdn~P~F~~~~--y~~~V~En~~~gt~v~~v~A~D~D~   74 (383)
                      .|||.     ...|.|+|+|.|.|.| +++++++|+|.|.|+|||+|.|.+..  |.+.|+||.++|+.|+++.|+|+|.
T Consensus        58 LD~E~~~~~~~~~~~l~v~a~d~~~~~~~s~~~~v~I~V~DvNDn~P~F~~~~~~y~~~v~En~~~gt~v~~v~A~D~D~  137 (316)
T 3ubf_A           58 WDYEELGPEKTIDFWVIITNMGHNAGIKYTDNQRVIILVKDVNDEPPYFINRPLPMQAVVQLNAPPNTPVFTLQARDPDT  137 (316)
T ss_dssp             CCGGGSCTTCEEEEEEEEEC-------CCCEEEEEEEEEECTTCCCCEECCSSSSEEEEECTTCCTTCEEEECCEECSST
T ss_pred             cChhhcccccceEEEEEEEEcCCCCCCcccceEEEEEEEEECCCCCCccCCCCCCEEEEEeCCCCCCCEEEEEEEECCCC
Confidence            36776     4579999999998876 67999999999999999999999987  8999999999999999999999997


Q ss_pred             -CeeEEEEec-CCCCCEEEcC-cccEEEcccCCcccCcEEEEEEEEecCC-------ceeEEEEEEEEeecCCCCCcccC
Q psy4697          75 -LRVKYWLSN-DYGERFSISR-QGDISLMQCLDYETEDSYRFTVYATDTL-------MTTSATVNISVVNVNDWDPRFRY  144 (383)
Q Consensus        75 -~~v~Ysi~~-~~~~~F~Id~-tG~I~~~~~LD~E~~~~y~~~V~A~D~~-------~~s~~tV~I~V~DvNDn~P~f~~  144 (383)
                       ..++|+|.. +..++|.|++ +|.|++.++||||....|.|+|.|+|++       ++++++|+|.|.| |||+|+|..
T Consensus       138 g~ni~Y~i~~~~~~~~F~Id~~tG~i~~~~~lD~e~~~~y~l~V~A~D~g~~~~~~~~~~~~~v~I~V~d-nDn~P~F~~  216 (316)
T 3ubf_A          138 DHNIHYFIVRDRTGGRFEVDERSGVVRTRGTDLFQLDMEYVLYVKAEDQNGKVDDRRFQSTPEERLSIVG-GKRAPQFYM  216 (316)
T ss_dssp             TCCEEEEEEEEESSSCEEECTTTCEEEECSSCCCCTTCEEEEEEEEEESCC-------CBCCCEEEEEEE-SCCCCEESS
T ss_pred             CCceEEEEEeCCCCCEEEEECCccEEEECCcCCcccCcEEEEEEEEEeCCCCCCCccccceEEEEEEEEc-CCCCCEEcC
Confidence             559999985 5667999996 9999999999999999999999999975       5678899999999 999999999


Q ss_pred             CceeEEEeccCCCCCCCCceEEEEEeeeCCCCCeEEEEEe--CCCCCCEEEcC-CCcEEEecc-CCCCc---ceEEEEEE
Q psy4697         145 PQYELFLPHIPLADLTPGSVIGKVEAADGDKGDRVTLSLR--GPYEKMFSIND-SGHISIVDL-SALNT---STIQLVVV  217 (383)
Q Consensus       145 ~~~~~~v~~~~~e~~~~g~~v~~v~A~D~D~g~~i~ysi~--~~~~~~F~i~~-tG~i~l~~~-~~~~~---~~y~L~V~  217 (383)
                      +.|.+.++    |+.++|+.|+++.|+|+| +..++|+|.  ++..++|.|++ +|.|++.+. +++..   ..|.|.|.
T Consensus       217 ~~y~~~v~----En~~~gt~v~~v~A~D~D-n~~i~Y~i~~~~~~~~~F~Id~~tG~i~~~~~LD~E~~~~~~~y~l~V~  291 (316)
T 3ubf_A          217 PSYEAEIP----ENQKKDSDIISIKAKSFA-DREIRYTLKAQGQGAGTFNIGPTSGIVKLAKELDFEDLRQPHVYSLIVT  291 (316)
T ss_dssp             SSEEEEEE----TTCCTTCEEEECCEECTT-CCCEEEEEEEESSCTTTEEECTTTCEEEECSCCCSSCTTSCSEEEEEEE
T ss_pred             CCceEEEe----CCCCCCCEEEEEEEEeCC-CCEEEEEEEcCCCCCCeEEEECCeEEEEECCcCCccccCCCceEEEEEE
Confidence            99999999    999999999999999999 567999995  66778999997 999998765 66655   68999999


Q ss_pred             EeeCCCCCceeEEEEEEEEeCCcccC
Q psy4697         218 ATDTGNPPRQASVPAIMHFPEAIVQQ  243 (383)
Q Consensus       218 a~D~g~p~~sst~tv~I~v~~~~~~~  243 (383)
                      |+|.+. +++++++|+|.| .+.|++
T Consensus       292 A~dd~g-~~~~~~~v~I~V-~DvNDn  315 (316)
T 3ubf_A          292 ATEDSG-GFSTSVDLTIRV-TDVNDN  315 (316)
T ss_dssp             EEESSS-SCEEEEEEEEEE-ECC---
T ss_pred             EEECCC-CCEEEEEEEEEE-EecCCC
Confidence            995333 589999999999 666664

>1l3w_A EP-cadherin, C-cadherin; cell adhesion, calcium binding, extracellular, ECT metal binding protein; HET: NAG NDG; 3.08A {Xenopus laevis} SCOP: b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1

Probab=100.00  E-value=4.4e-41  Score=346.99  Aligned_cols=240  Identities=18%  Similarity=0.264  Sum_probs=221.8

Q ss_pred             CCcCCCCeEEEEEEEEECCCCCceEEEEEEEEEeeCCCCCCeeecCcEEEEEECCCCCCcEEEEEEeEeCC--C---Cee
Q psy4697           3 NEDDFLQPITLVVRAIQYDNQDRYALATLIVSKAGTSLRELQFSKNEYSVSALENLPVNYVLLTVTTNKPR--D---LRV   77 (383)
Q Consensus         3 ~DrE~~~~y~l~V~a~D~g~~~~~s~~~v~V~V~DvNdn~P~F~~~~y~~~V~En~~~gt~v~~v~A~D~D--~---~~v   77 (383)
                      .|||..+.|.|+|+|+|.|.|+++++++|+|.|.|+|||+|+|.+..|.++|+|| ++|+.|++|.|+|+|  .   +.+
T Consensus       185 LD~E~~~~y~l~V~A~D~g~~~~s~~~~v~I~V~DvNDn~P~F~~~~y~~~V~En-~~gt~v~~v~A~D~D~~~g~n~~v  263 (546)
T 1l3w_A          185 LDREKFPEYTLTVQATDLEGAGLSVEGKAIIQITDANDNAPIFDPKTYTALVPEN-EIGFEVQRLSVTDLDMPGTPAWQA  263 (546)
T ss_dssp             CCTTTCCEEEEEEEEEHHHHTSCEEECCEEEEEECCCCCCCCBSCSEEEEEEESS-SCCCEEEEECBCCCSCTTSTTSCE
T ss_pred             CCcccCceEEEEEEEEECCCCCcceEEEEEEEEeecCCCCCccccccceEEEEeC-CCCCEEEEEEEEeCCCCCCCCcEE
Confidence            4899999999999999999999999999999999999999999999999999999 999999999999999  3   789


Q ss_pred             EEEEecCCCCCEEEc-----CcccEEEcccCCcccCcEEEEEEEEecCC------ceeEEEEEEEEeecCCCCCcccCCc
Q psy4697          78 KYWLSNDYGERFSIS-----RQGDISLMQCLDYETEDSYRFTVYATDTL------MTTSATVNISVVNVNDWDPRFRYPQ  146 (383)
Q Consensus        78 ~Ysi~~~~~~~F~Id-----~tG~I~~~~~LD~E~~~~y~~~V~A~D~~------~~s~~tV~I~V~DvNDn~P~f~~~~  146 (383)
                      +|+|.++..++|.|+     .+|.|++.++||||....|.|+|+|+|++      ++++++|.|+|.|+|| +|+|..+.
T Consensus       264 ~y~i~~~~~~~F~I~~d~~~~~G~i~~~~~LD~E~~~~y~l~V~a~D~~~~~~~~~s~~~~v~I~V~DvND-~P~f~~~~  342 (546)
T 1l3w_A          264 VYKIRVNEGGFFNITTDPESNQGILTTAKGLDFELRKQYVLQITVENAEPFSVPLPTSTATVTVTVEDVNE-APFFVPAV  342 (546)
T ss_dssp             ECCBSCCTTSCEEEEECTTTCCEEEEESSCCCCSSCCCEEEEECCEESSCCSSCCCCCCEEEEEEEECCCC-CCEESSCE
T ss_pred             EEEEEeCCCceEEEEecCCCCeEEEEECccCCcccccEEEEEEEEEECCCCCCCCcceeEEEEEEEEcCCC-CCcEecce
Confidence            999987667799995     37999999999999999999999999964      6789999999999999 99999999


Q ss_pred             eeEEEeccCCCCCCCCceEEEEEeeeCCCCC--eEEEEEeCCCCCCEEEcC-CCcEEEecc-CCCCc----ceEEEEEEE
Q psy4697         147 YELFLPHIPLADLTPGSVIGKVEAADGDKGD--RVTLSLRGPYEKMFSIND-SGHISIVDL-SALNT----STIQLVVVA  218 (383)
Q Consensus       147 ~~~~v~~~~~e~~~~g~~v~~v~A~D~D~g~--~i~ysi~~~~~~~F~i~~-tG~i~l~~~-~~~~~----~~y~L~V~a  218 (383)
                      |.+.|+    |+.++|+.|++|.|+|+|.|.  .++|+|.++..++|.|++ +|.|++.+. +++..    ..|.|.|.|
T Consensus       343 y~~~V~----En~~~g~~v~~v~A~D~D~g~n~~i~ysi~~~~~~~F~Id~~tG~i~~~~~lD~E~~~~~~~~y~l~V~a  418 (546)
T 1l3w_A          343 SRVDVS----EDLSRGEKIISLVAQDPDKQQIQKLSYFIGNDPARWLTVNKDNGIVTGNGNLDRESEYVKNNTYTVIMLV  418 (546)
T ss_dssp             ECCCBC----TTCCSSEEEEECCEECCCTTCCCCEEEEECCCSSCCCEEETTTTEEEECSCCCTTSSSCCSSCCEEEEEE
T ss_pred             EEEEEe----CCCCCCCEEEEEEEECCCCCCCceEEEEECCCCCCcEEEeCCcEEEEECCccCCccccCCCCEEEEEEEE
Confidence            999999    999999999999999999875  799999877778999997 999998764 66665    899999999


Q ss_pred             eeCCCCCceeEEEEEEEEeCCcccCcccccC
Q psy4697         219 TDTGNPPRQASVPAIMHFPEAIVQQASSKLN  249 (383)
Q Consensus       219 ~D~g~p~~sst~tv~I~v~~~~~~~~p~~~~  249 (383)
                      +|+|.|+++++++|.|.| .++|+++|.|..
T Consensus       419 ~D~g~p~~s~~~~v~I~V-~DvNDn~P~f~~  448 (546)
T 1l3w_A          419 TDDGVSVGTGTGTLILHV-LDVNDNGPVPSP  448 (546)
T ss_dssp             EECSSSCCCCCEEEECCB-CCCCCSCCCBSC
T ss_pred             EECCCCCcEeEEEEEEEE-EECCCCcCCccC
Confidence            999999999999999999 889999998863

>3q2w_A Cadherin-2; cell adhesion, calcium binding; HET: MAN NAG; 3.20A {Mus musculus}

Probab=100.00  E-value=1.3e-39  Score=336.89  Aligned_cols=240  Identities=20%  Similarity=0.315  Sum_probs=218.5

Q ss_pred             CCcCCCCeEEEEEEEEECCC---CCceEEEEEEEEEeeCCCCCCeeecCcEEEEEECCCCCCcEEEEEEeEeCCC-----
Q psy4697           3 NEDDFLQPITLVVRAIQYDN---QDRYALATLIVSKAGTSLRELQFSKNEYSVSALENLPVNYVLLTVTTNKPRD-----   74 (383)
Q Consensus         3 ~DrE~~~~y~l~V~a~D~g~---~~~~s~~~v~V~V~DvNdn~P~F~~~~y~~~V~En~~~gt~v~~v~A~D~D~-----   74 (383)
                      .|||..+.|.|+|+|+|.|+   ++++++++|+|.|.|+|||+|+|.+..|.+.|+||. +|+.|+++.|+|+|.     
T Consensus       178 LD~E~~~~y~l~V~A~D~~g~p~~~~s~t~~v~I~V~DvNDn~P~f~~~~y~~~V~En~-~g~~v~~v~a~D~D~~~~~n  256 (559)
T 3q2w_A          178 LDREKVQQYTLIIQATDMEGNPTYGLSNTATAVITVTDVNDNPPEFTAMTFYGEVPENR-VDVIVANLTVTDKDQPHTPA  256 (559)
T ss_dssp             CCTTTCCEEEEEEEEEHHHHCTTTCCEEEEEEEEEEECCSCSCCEESSSEEEEEEESSC-SSEEEEEEEEECCSCTTSTT
T ss_pred             CCcccCCEEEEEEEEEECCCCCCCCccceEEEEEEEEeCCCCCCccccccceeEecCCC-CCcEEEEEEEEcCCCCCCCc
Confidence            48999999999999999754   468999999999999999999999999999999997 899999999999996     


Q ss_pred             CeeEEEEec-CCCCCEEE----c-CcccEEEcccCCcccCcEEEEEEEEecCC---------ceeEEEEEEEEeecCCCC
Q psy4697          75 LRVKYWLSN-DYGERFSI----S-RQGDISLMQCLDYETEDSYRFTVYATDTL---------MTTSATVNISVVNVNDWD  139 (383)
Q Consensus        75 ~~v~Ysi~~-~~~~~F~I----d-~tG~I~~~~~LD~E~~~~y~~~V~A~D~~---------~~s~~tV~I~V~DvNDn~  139 (383)
                      +.++|+|.. +..++|.|    + .+|.|++.++||||....|.|+|.|+|++         ++++++|.|.|.|+|| +
T Consensus       257 ~~~~y~i~~g~~~~~F~I~~~~~~~~G~i~~~~~LD~E~~~~y~l~V~A~D~~~~~~g~~~~~~s~~~v~I~V~DvND-~  335 (559)
T 3q2w_A          257 WNAAYRISGGDPTGRFAILTDPNSNDGLVTVVKPIDFETNRMFVLTVAAENQVPLAKGIQHPPQSTATVSVTVIDVNE-N  335 (559)
T ss_dssp             TSBCCEEEESCTTCCEEEEECTTTCEEEEEECSCCCTTTCSEEEEEEECCBSSCCCTTCCCCGGGEEEEEEEEECCCC-C
T ss_pred             eeEEEEEecCCCCCceEEEecCCCCcEEEEeCCCCCCccCceEEEEEEEEcCCccccCCCCCCceEEEEEEEEEeCCC-C
Confidence            369999976 55779999    4 49999999999999999999999999952         5789999999999999 6


Q ss_pred             CcccCCceeEEEeccCCCCCCCCceEEEEEeeeCCCCC--eEEEEEeCCCCCCEEEcC-CCcEEEecc-CCCCc----ce
Q psy4697         140 PRFRYPQYELFLPHIPLADLTPGSVIGKVEAADGDKGD--RVTLSLRGPYEKMFSIND-SGHISIVDL-SALNT----ST  211 (383)
Q Consensus       140 P~f~~~~~~~~v~~~~~e~~~~g~~v~~v~A~D~D~g~--~i~ysi~~~~~~~F~i~~-tG~i~l~~~-~~~~~----~~  211 (383)
                      |.|....|.+.++    |+.++|+.|++|.|+|+|.|.  .++|+|.++..++|.|++ +|.|++.+. +++..    ..
T Consensus       336 P~f~~~~~~~~v~----En~~~g~~v~~v~A~D~D~g~n~~i~Ysi~~~~~~~f~Id~~tG~i~~~~~lDrE~~~~~~~~  411 (559)
T 3q2w_A          336 PYFAPNPKIIRQE----EGLHAGTMLTTLTAQDPDRYMQQNIRYTKLSDPANWLKIDPVNGQITTIAVLDRESPNVKNNI  411 (559)
T ss_dssp             CEESSSEEEEEEE----SCCCTTCEEEECCEECSCSSSCCCEEEEEEECTTCCEEECTTTCEEEESSCCCSSSTTSCSSE
T ss_pred             CcccccceEEEEe----CCCCCCCEEEEEEEECCCCCCCCceEEEEccCCccceEecCCceEEEEccccCcccccccCCE
Confidence            9999999999999    999999999999999999974  699999877778999997 999998764 55543    89


Q ss_pred             EEEEEEEeeCCCCCceeEEEEEEEEeCCcccCcccccC
Q psy4697         212 IQLVVVATDTGNPPRQASVPAIMHFPEAIVQQASSKLN  249 (383)
Q Consensus       212 y~L~V~a~D~g~p~~sst~tv~I~v~~~~~~~~p~~~~  249 (383)
                      |.|+|.|+|+|.|+++++++|.|.| .+.|+++|.+..
T Consensus       412 y~l~V~A~D~g~p~~ss~~~v~I~V-~DvNDn~P~f~~  448 (559)
T 3q2w_A          412 YNATFLASDNGIPPMSGTGTLQIYL-LDINDNAPQVLP  448 (559)
T ss_dssp             EEEEEEEEECSSSCCEEEEEEEEEE-ECCSCCCCEESC
T ss_pred             EEEEEEEEcCCCCcceEEEEEEEEE-EEccCCCCcccC
Confidence            9999999999999999999999999 889999998864

>3q2w_A Cadherin-2; cell adhesion, calcium binding; HET: MAN NAG; 3.20A {Mus musculus}

Probab=100.00  E-value=1.4e-39  Score=336.73  Aligned_cols=240  Identities=19%  Similarity=0.267  Sum_probs=216.0

Q ss_pred             CCcCCCCeEEEEEEEEECCCCCceEEEEEEEEEeeCCCCCCeeecCcEEEEEECCCCCCcEEEEEEeEeCCC-----Cee
Q psy4697           3 NEDDFLQPITLVVRAIQYDNQDRYALATLIVSKAGTSLRELQFSKNEYSVSALENLPVNYVLLTVTTNKPRD-----LRV   77 (383)
Q Consensus         3 ~DrE~~~~y~l~V~a~D~g~~~~~s~~~v~V~V~DvNdn~P~F~~~~y~~~V~En~~~gt~v~~v~A~D~D~-----~~v   77 (383)
                      .|||....|.|+|+|.|.|++.+++.+.|.|.|.|+|||+|+|.+..|.++|+||.++|+.|+++.|+|+|.     +.+
T Consensus        66 LDrE~~~~y~l~v~a~D~g~~~~~~~~~v~I~V~DvNDn~P~F~~~~y~~~V~En~~~Gt~v~~v~A~D~D~g~~~n~~v  145 (559)
T 3q2w_A           66 LDRELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNGML  145 (559)
T ss_dssp             CCTTTCSEEEEEEEEEETTSCEEEEEEEEEEEEECCCCCCCEESCSEEEEEEETTCCTTCEEEECCEECSSCTTSGGGCC
T ss_pred             cCCCCCceEEEEEEEEECCCCccceeEEEEEEEEeCCCCCCccCCCeeEEEEeCCCCCCcEEEEEEEEcCCCCCCCceEE
Confidence            489999999999999999999999999999999999999999999999999999999999999999999994     679


Q ss_pred             EEEEecCC-----CCCEEEcC-cccEEEcc-cCCcccCcEEEEEEEEecC------CceeEEEEEEEEeecCCCCCcccC
Q psy4697          78 KYWLSNDY-----GERFSISR-QGDISLMQ-CLDYETEDSYRFTVYATDT------LMTTSATVNISVVNVNDWDPRFRY  144 (383)
Q Consensus        78 ~Ysi~~~~-----~~~F~Id~-tG~I~~~~-~LD~E~~~~y~~~V~A~D~------~~~s~~tV~I~V~DvNDn~P~f~~  144 (383)
                      +|+|.+..     .++|.|++ +|.|++.+ .||||....|.|.|+|+|+      +++++++|.|+|.|+|||+|+|..
T Consensus       146 ~Ysi~~~~~~~~~~~~F~Id~~tG~i~~~~~~LD~E~~~~y~l~V~A~D~~g~p~~~~s~t~~v~I~V~DvNDn~P~f~~  225 (559)
T 3q2w_A          146 RYRILSQAPSTPSPNMFTINNETGDIITVAAGLDREKVQQYTLIIQATDMEGNPTYGLSNTATAVITVTDVNDNPPEFTA  225 (559)
T ss_dssp             EEEEEEEESCCSCTTCEEECTTTCEEEECCSCCCTTTCCEEEEEEEEEHHHHCTTTCCEEEEEEEEEEECCSCSCCEESS
T ss_pred             EEEEecCCCCCCCcceEEEeCCceEEEEEeccCCcccCCEEEEEEEEEECCCCCCCCccceEEEEEEEEeCCCCCCcccc
Confidence            99997622     26899996 99999987 9999999999999999995      278999999999999999999999


Q ss_pred             CceeEEEeccCCCCCCCCceEEEEEeeeCCCCC----eEEEEEe-CCCCCCEEE----cC-CCcEEEec-cCCCCcceEE
Q psy4697         145 PQYELFLPHIPLADLTPGSVIGKVEAADGDKGD----RVTLSLR-GPYEKMFSI----ND-SGHISIVD-LSALNTSTIQ  213 (383)
Q Consensus       145 ~~~~~~v~~~~~e~~~~g~~v~~v~A~D~D~g~----~i~ysi~-~~~~~~F~i----~~-tG~i~l~~-~~~~~~~~y~  213 (383)
                      ..|.+.|+    |+. +|+.++++.|+|+|.|.    .++|+|. ++..+.|.|    +. +|.|++.+ ++++....|.
T Consensus       226 ~~y~~~V~----En~-~g~~v~~v~a~D~D~~~~~n~~~~y~i~~g~~~~~F~I~~~~~~~~G~i~~~~~LD~E~~~~y~  300 (559)
T 3q2w_A          226 MTFYGEVP----ENR-VDVIVANLTVTDKDQPHTPAWNAAYRISGGDPTGRFAILTDPNSNDGLVTVVKPIDFETNRMFV  300 (559)
T ss_dssp             SEEEEEEE----SSC-SSEEEEEEEEECCSCTTSTTTSBCCEEEESCTTCCEEEEECTTTCEEEEEECSCCCTTTCSEEE
T ss_pred             ccceeEec----CCC-CCcEEEEEEEEcCCCCCCCceeEEEEEecCCCCCceEEEecCCCCcEEEEeCCCCCCccCceEE
Confidence            99999999    997 89999999999999874    5999997 666789999    44 89998876 4788899999


Q ss_pred             EEEEEeeCC------CCCceeEEEEEEEEeCCcccCcccccC
Q psy4697         214 LVVVATDTG------NPPRQASVPAIMHFPEAIVQQASSKLN  249 (383)
Q Consensus       214 L~V~a~D~g------~p~~sst~tv~I~v~~~~~~~~p~~~~  249 (383)
                      |.|.|+|.+      .|+++++++|.|.| .++|+ +|.|..
T Consensus       301 l~V~A~D~~~~~~g~~~~~~s~~~v~I~V-~DvND-~P~f~~  340 (559)
T 3q2w_A          301 LTVAAENQVPLAKGIQHPPQSTATVSVTV-IDVNE-NPYFAP  340 (559)
T ss_dssp             EEEECCBSSCCCTTCCCCGGGEEEEEEEE-ECCCC-CCEESS
T ss_pred             EEEEEEcCCccccCCCCCCceEEEEEEEE-EeCCC-CCcccc
Confidence            999999974      37899999999999 67777 466643

>1l3w_A EP-cadherin, C-cadherin; cell adhesion, calcium binding, extracellular, ECT metal binding protein; HET: NAG NDG; 3.08A {Xenopus laevis} SCOP: b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1

Probab=100.00  E-value=8.8e-40  Score=337.25  Aligned_cols=240  Identities=18%  Similarity=0.231  Sum_probs=216.1

Q ss_pred             CCcCCCCeEEEEEEEEECCCCCceEEEEEEEEEeeCCCCCCeeecCcEEEEEECCCCCCcEEEEEEeEeCCC------Ce
Q psy4697           3 NEDDFLQPITLVVRAIQYDNQDRYALATLIVSKAGTSLRELQFSKNEYSVSALENLPVNYVLLTVTTNKPRD------LR   76 (383)
Q Consensus         3 ~DrE~~~~y~l~V~a~D~g~~~~~s~~~v~V~V~DvNdn~P~F~~~~y~~~V~En~~~gt~v~~v~A~D~D~------~~   76 (383)
                      .|||....|.|+|+|.|.|.+++++.+.|+|.|.|+|||+|+|.+..|.++|+||.++|+.|+++.|+|+|.      +.
T Consensus        72 LDrE~~~~y~l~v~A~D~~~~~~~~~~~v~I~V~DvNDn~P~F~~~~y~~~V~En~~~gt~v~~v~A~D~D~g~~~~n~~  151 (546)
T 1l3w_A           72 LDREEYDKYVLSSHAVSENGSPVEEPMEITINVIDQNDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGV  151 (546)
T ss_dssp             CCTTTCCEEEEEEEEEESSSCBCSCCEEEEEEEECCSCCCCEESSSCEEEEEETTCCSSEEEEECCEECCSCCSSSSTTC
T ss_pred             CCcccCceEEEEEEEEeCCCCcccceEEEEEEEEecccCcCEecCceeEEEEECCCCCCCEEEEEEEEcCCCCCCCCCCE
Confidence            489999999999999999988888889999999999999999999999999999999999999999999995      58


Q ss_pred             eEEEEecC-----CCCCEEEcC-cccEEEc-ccCCcccCcEEEEEEEEecCC---ceeEEEEEEEEeecCCCCCcccCCc
Q psy4697          77 VKYWLSND-----YGERFSISR-QGDISLM-QCLDYETEDSYRFTVYATDTL---MTTSATVNISVVNVNDWDPRFRYPQ  146 (383)
Q Consensus        77 v~Ysi~~~-----~~~~F~Id~-tG~I~~~-~~LD~E~~~~y~~~V~A~D~~---~~s~~tV~I~V~DvNDn~P~f~~~~  146 (383)
                      ++|+|.+.     ..++|.|++ +|.|++. +.||||....|.|.|+|+|++   ++++++|.|+|.|+|||+|+|....
T Consensus       152 v~Ysi~~~~~~~~~~~~F~Id~~tG~i~~~~~~LD~E~~~~y~l~V~A~D~g~~~~s~~~~v~I~V~DvNDn~P~F~~~~  231 (546)
T 1l3w_A          152 LSYSILKQDPEEPIPNLFTINRETGVISLIGTGLDREKFPEYTLTVQATDLEGAGLSVEGKAIIQITDANDNAPIFDPKT  231 (546)
T ss_dssp             CEEEEEEESSCCSCSCSEEECTTTCEEEECSCCCCTTTCCEEEEEEEEEHHHHTSCEEECCEEEEEECCCCCCCCBSCSE
T ss_pred             EEEEEeCCCCCcccCCcEEEeCCCceEEEeccCCCcccCceEEEEEEEEECCCCCcceEEEEEEEEeecCCCCCcccccc
Confidence            99999873     347999996 9999985 799999999999999999964   7899999999999999999999999


Q ss_pred             eeEEEeccCCCCCCCCceEEEEEeeeCC--CCC--eEEEEEeCCCCCCEEEc-----CCCcEEEecc-CCCCcceEEEEE
Q psy4697         147 YELFLPHIPLADLTPGSVIGKVEAADGD--KGD--RVTLSLRGPYEKMFSIN-----DSGHISIVDL-SALNTSTIQLVV  216 (383)
Q Consensus       147 ~~~~v~~~~~e~~~~g~~v~~v~A~D~D--~g~--~i~ysi~~~~~~~F~i~-----~tG~i~l~~~-~~~~~~~y~L~V  216 (383)
                      |.+.|+    |+ ++|+.|+++.|+|+|  .|.  .++|+|.++..+.|.|+     .+|.|++.+. +++....|.|.|
T Consensus       232 y~~~V~----En-~~gt~v~~v~A~D~D~~~g~n~~v~y~i~~~~~~~F~I~~d~~~~~G~i~~~~~LD~E~~~~y~l~V  306 (546)
T 1l3w_A          232 YTALVP----EN-EIGFEVQRLSVTDLDMPGTPAWQAVYKIRVNEGGFFNITTDPESNQGILTTAKGLDFELRKQYVLQI  306 (546)
T ss_dssp             EEEEEE----SS-SCCCEEEEECBCCCSCTTSTTSCEECCBSCCTTSCEEEEECTTTCCEEEEESSCCCCSSCCCEEEEE
T ss_pred             ceEEEE----eC-CCCCEEEEEEEEeCCCCCCCCcEEEEEEEeCCCceEEEEecCCCCeEEEEECccCCcccccEEEEEE
Confidence            999999    99 999999999999999  554  69999987666799995     3799988764 777889999999


Q ss_pred             EEeeCC---CCCceeEEEEEEEEeCCcccCcccccC
Q psy4697         217 VATDTG---NPPRQASVPAIMHFPEAIVQQASSKLN  249 (383)
Q Consensus       217 ~a~D~g---~p~~sst~tv~I~v~~~~~~~~p~~~~  249 (383)
                      .|+|+|   .|+++++++|.|.| .+.|+ +|.|..
T Consensus       307 ~a~D~~~~~~~~~s~~~~v~I~V-~DvND-~P~f~~  340 (546)
T 1l3w_A          307 TVENAEPFSVPLPTSTATVTVTV-EDVNE-APFFVP  340 (546)
T ss_dssp             CCEESSCCSSCCCCCCEEEEEEE-ECCCC-CCEESS
T ss_pred             EEEECCCCCCCCcceeEEEEEEE-EcCCC-CCcEec
Confidence            999987   46789999999999 66777 776643

>3q2v_A Cadherin-1; cell adhesion, calcium binding; HET: MAN; 3.40A {Mus musculus}

Probab=100.00  E-value=4.6e-39  Score=332.21  Aligned_cols=244  Identities=16%  Similarity=0.241  Sum_probs=218.9

Q ss_pred             CCcCCCCeEEEEEEEEECCCCCceEEEEEEEEEeeCCCCCCeeecCcEEEEEECCCCCCcEEEEEEeEeCCC------Ce
Q psy4697           3 NEDDFLQPITLVVRAIQYDNQDRYALATLIVSKAGTSLRELQFSKNEYSVSALENLPVNYVLLTVTTNKPRD------LR   76 (383)
Q Consensus         3 ~DrE~~~~y~l~V~a~D~g~~~~~s~~~v~V~V~DvNdn~P~F~~~~y~~~V~En~~~gt~v~~v~A~D~D~------~~   76 (383)
                      .|||....|.|+|.|.|.+++..++.+.|.|.|.|+|||+|.|.+..|.++|+||.++|+.++++.|+|+|.      +.
T Consensus        66 LDrE~~~~y~l~v~a~d~~~~~~~~~~~v~I~V~DvNDn~P~F~~~~y~~~V~E~~~~Gt~v~~v~A~D~D~g~~~~N~~  145 (550)
T 3q2v_A           66 LDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAA  145 (550)
T ss_dssp             CCTTTCSEEEEEEEEEETTSCBCSCCEEEEEEEECCSCCCCCBSCSEEEEEEETTCCTTCEEEECCBCCCSCTTTCGGGC
T ss_pred             cCcccCCeeEEEEEEEeCCCCcccceEEEEEEEEecCCCCCccCCCceEEEEeCCCCCCCEEEEEEEEeCCCCCCCcceE
Confidence            489999999999999999988888889999999999999999999999999999999999999999999995      48


Q ss_pred             eEEEEecC-----CCCCEEEcC-cccEEE-cccCCcccCcEEEEEEEEecC---CceeEEEEEEEEeecCCCCCcccCCc
Q psy4697          77 VKYWLSND-----YGERFSISR-QGDISL-MQCLDYETEDSYRFTVYATDT---LMTTSATVNISVVNVNDWDPRFRYPQ  146 (383)
Q Consensus        77 v~Ysi~~~-----~~~~F~Id~-tG~I~~-~~~LD~E~~~~y~~~V~A~D~---~~~s~~tV~I~V~DvNDn~P~f~~~~  146 (383)
                      ++|+|.+.     ..++|.|++ +|.|++ .+.||||....|.|+|+|+|+   +++++++|.|+|.|+|||+|+|....
T Consensus       146 i~Ysi~~~~~~~~~~~~F~id~~tG~i~~~~~~LDrE~~~~y~l~V~A~D~g~~~~s~t~~v~I~V~DvNDn~P~F~~~~  225 (550)
T 3q2v_A          146 IAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKDINDNAPVFNPST  225 (550)
T ss_dssp             CEEEEEEEESCCSSSCSEEECTTTCEEEECSSCCCTTTCSEEEEEEEEESGGGTSCCCEEEEEEEEECCSCSCCEESSSE
T ss_pred             EEEEEecCCCCCCcCCceEEcCCCeEEEEccCCCCcccCcEEEEEEEEEcCCCCCeeEEEEEEEEecccCCCCCEEecce
Confidence            99999762     356899996 999988 489999999999999999995   38899999999999999999999999


Q ss_pred             eeEEEeccCCCCCCCCceEEEEEeeeCCCCC----eEEEEEeCCCCCCEEEc----C-CCcEEEec-cCCCCcceEEEEE
Q psy4697         147 YELFLPHIPLADLTPGSVIGKVEAADGDKGD----RVTLSLRGPYEKMFSIN----D-SGHISIVD-LSALNTSTIQLVV  216 (383)
Q Consensus       147 ~~~~v~~~~~e~~~~g~~v~~v~A~D~D~g~----~i~ysi~~~~~~~F~i~----~-tG~i~l~~-~~~~~~~~y~L~V  216 (383)
                      |.+.++    |+ ++|+.|+++.|+|+|.|.    .+.|+|.++..+.|.|+    . +|.|++.+ ++++....|.|.|
T Consensus       226 y~~~V~----En-~~g~~v~~v~a~D~D~~~n~~~~~~ysi~~~~~~~F~i~~d~~~~tG~i~~~~~LD~E~~~~y~l~V  300 (550)
T 3q2v_A          226 YQGQVP----EN-EVNARIATLKVTDDDAPNTPAWKAVYTVVNDPDQQFVVVTDPTTNDGILKTAKGLDFEAKQQYILHV  300 (550)
T ss_dssp             EEEEEE----SS-CSSCCCEEECEECCSCTTSTTTCEEEEESSCSSCCEEEEECTTTCCEEEEESSCCCTTTCSEEEEEE
T ss_pred             eEEEEe----cC-CCCCEEEEEEEEECCCCCCCcEEEEEEEEeCCCCcEEEEecCCCccEEEEecccCCccccceEEEEE
Confidence            999999    99 899999999999999885    47899987777899997    4 89999876 4788899999999


Q ss_pred             EEeeCC---CCCceeEEEEEEEEeCCcccCcccccCCCCc
Q psy4697         217 VATDTG---NPPRQASVPAIMHFPEAIVQQASSKLNSGTS  253 (383)
Q Consensus       217 ~a~D~g---~p~~sst~tv~I~v~~~~~~~~p~~~~~~~~  253 (383)
                      .|+|+|   .|+++++++|.|.| .+.|+ +|.|....+.
T Consensus       301 ~a~D~~~~~~~~~~~~~~v~I~V-~DvND-~P~f~~~~~~  338 (550)
T 3q2v_A          301 RVENEEPFEGSLVPSTATVTVDV-VDVNE-APIFMPAERR  338 (550)
T ss_dssp             EEEESSCCCSSCCCEEEEEEEEE-ECCCC-CCEESSSSCE
T ss_pred             EEEeCCCCCCCccceEEEEEEEE-EecCC-CCeEcCcceE
Confidence            999987   46689999999999 67777 7777544333

>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction, adhesion, structural protein; HET: NAG NDG; 30.00A {Mus musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A*

Probab=100.00  E-value=2e-38  Score=342.65  Aligned_cols=240  Identities=18%  Similarity=0.231  Sum_probs=216.1

Q ss_pred             CCcCCCCeEEEEEEEEECCCCCceEEEEEEEEEeeCCCCCCeeecCcEEEEEECCCCCCcEEEEEEeEeCCC------Ce
Q psy4697           3 NEDDFLQPITLVVRAIQYDNQDRYALATLIVSKAGTSLRELQFSKNEYSVSALENLPVNYVLLTVTTNKPRD------LR   76 (383)
Q Consensus         3 ~DrE~~~~y~l~V~a~D~g~~~~~s~~~v~V~V~DvNdn~P~F~~~~y~~~V~En~~~gt~v~~v~A~D~D~------~~   76 (383)
                      .|||....|.|+|+|+|.|.+++++.++|+|.|.|+|||+|+|.+..|.++|+||.++|+.|++|.|+|+|.      +.
T Consensus       221 LDrE~~~~y~l~v~A~D~g~~~~~~~~~v~I~V~DvNDn~P~F~~~~y~~~V~En~~~Gt~V~~v~AtD~D~g~~~~N~~  300 (880)
T 1q55_A          221 LDREEYDKYVLSSHAVSENGSPVEEPMEITINVIDQNDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGV  300 (880)
T ss_dssp             CCTTTCCEEEEEEEEEESSSCBCSCCEEEEEEEECCSCCCCEESSSCEEEEEETTCCSSEEEEECCEECCSCCSSSSTTC
T ss_pred             cCccccCccEEEEEEEECCCCceeeeEEEEEEEEecCCCCCCccCCcEEEEEeCCCCCCceeEEEEEEcCCCCCCCcCcE
Confidence            489999999999999999988888999999999999999999999999999999999999999999999995      58


Q ss_pred             eEEEEecC-----CCCCEEEcC-cccEEEc-ccCCcccCcEEEEEEEEecCC---ceeEEEEEEEEeecCCCCCcccCCc
Q psy4697          77 VKYWLSND-----YGERFSISR-QGDISLM-QCLDYETEDSYRFTVYATDTL---MTTSATVNISVVNVNDWDPRFRYPQ  146 (383)
Q Consensus        77 v~Ysi~~~-----~~~~F~Id~-tG~I~~~-~~LD~E~~~~y~~~V~A~D~~---~~s~~tV~I~V~DvNDn~P~f~~~~  146 (383)
                      ++|+|.+.     ..++|.|++ +|.|++. +.||||....|.|+|+|+|++   ++++++|.|+|.|+|||+|+|....
T Consensus       301 v~Ysi~~~~~~~~~~~~F~Id~~tG~I~~~~~~LDrE~~~~y~l~V~A~D~g~~~~s~~~~v~I~V~DvNDn~P~F~~~~  380 (880)
T 1q55_A          301 LSYSILKQDPEEPIPNLFTINRETGVISLIGTGLDREKFPEYTLTVQATDLEGAGLSVEGKAIIQITDANDNAPIFDPKT  380 (880)
T ss_dssp             CEEEEEEESSCCSCSCSEEECTTTCEEEECSCCCCTTTCCEEEEEEEEEHHHHTSCEEECCEEEEEECCCCCCCCBSCSE
T ss_pred             EEEEEcCCCCCcccCCeEEEccCCccEEEecccCCHHHcceeEEEEEEEECCCCCccceeEEEEEEEeccCCCCCccccc
Confidence            99999873     346999996 9999986 799999999999999999964   7899999999999999999999999


Q ss_pred             eeEEEeccCCCCCCCCceEEEEEeeeCC--CCC--eEEEEEeCCCCCCEEEc-----CCCcEEEecc-CCCCcceEEEEE
Q psy4697         147 YELFLPHIPLADLTPGSVIGKVEAADGD--KGD--RVTLSLRGPYEKMFSIN-----DSGHISIVDL-SALNTSTIQLVV  216 (383)
Q Consensus       147 ~~~~v~~~~~e~~~~g~~v~~v~A~D~D--~g~--~i~ysi~~~~~~~F~i~-----~tG~i~l~~~-~~~~~~~y~L~V  216 (383)
                      |.+.|+    |+ ++|+.|+++.|+|+|  .|.  .++|+|.++..++|.|+     .+|.|.+.+. +++....|.|.|
T Consensus       381 y~~~V~----En-~~gt~V~~v~A~D~D~~~g~n~~v~Ysi~~~~~~~F~I~~d~~~~~G~i~~~~~LD~E~~~~y~l~V  455 (880)
T 1q55_A          381 YTALVP----EN-EIGFEVQRLSVTDLDMPGTPAWQAVYKIRVNEGGFFNITTDPESNQGILTTAKGLDFELRKQYVLQI  455 (880)
T ss_dssp             EEEEEE----SS-SCCCEEEEECBCCCSCTTSTTSCEECCBSCCTTSCEEEEECTTTCCEEEEESSCCCCSSCCCEEEEE
T ss_pred             eEEEee----cC-CCCcEEEEEEEECCCCCCCCCceEEEEEecCCCceEEEEecCCCceEEEecccCCCcccCCcEEEEE
Confidence            999999    99 999999999999999  554  69999987667799995     2699988764 778889999999


Q ss_pred             EEeeCC---CCCceeEEEEEEEEeCCcccCcccccC
Q psy4697         217 VATDTG---NPPRQASVPAIMHFPEAIVQQASSKLN  249 (383)
Q Consensus       217 ~a~D~g---~p~~sst~tv~I~v~~~~~~~~p~~~~  249 (383)
                      .|+|++   .|+++++++|+|.| .++|+ +|.|..
T Consensus       456 ~A~D~~~~~~~~~sst~tV~I~V-~DvND-~P~f~~  489 (880)
T 1q55_A          456 TVENAEPFSVPLPTSTATVTVTV-EDVNE-APFFVP  489 (880)
T ss_dssp             CCEESSCCSSCCCCCCEEEEEEE-ECCCC-CCEESS
T ss_pred             EEEECCCCCCCCcceeEEEEEEE-EeCCC-CCEEec
Confidence            999987   46789999999999 66777 776653

>3ubh_A Neural-cadherin; cell adhesion; 2.70A {Drosophila melanogaster}

Probab=100.00  E-value=2.3e-37  Score=309.55  Aligned_cols=240  Identities=18%  Similarity=0.234  Sum_probs=211.6

Q ss_pred             CCcCCC---CeEEEEEEEEECCCC---CceEEEEEEEEEeeCCCCCCeeecCc--EEEEEECCCCCCcEEEEEEeEeCCC
Q psy4697           3 NEDDFL---QPITLVVRAIQYDNQ---DRYALATLIVSKAGTSLRELQFSKNE--YSVSALENLPVNYVLLTVTTNKPRD   74 (383)
Q Consensus         3 ~DrE~~---~~y~l~V~a~D~g~~---~~~s~~~v~V~V~DvNdn~P~F~~~~--y~~~V~En~~~gt~v~~v~A~D~D~   74 (383)
                      .|||..   ..|.+.|.|+|.|.+   ++++.++|+|.|.|+|||+|.|.+..  |.+.|+||.++|+.|+++.|+|+|.
T Consensus        63 LD~E~~~~~~~~~~~V~a~d~g~~~~~~~~~~~~v~I~V~DvNDn~P~F~~~~~~~~~~v~E~~~~gt~v~~v~A~D~D~  142 (419)
T 3ubh_A           63 WDYEELGPEKTIDFWVIITNMGHNAGIKYTDNQRVIILVKDVNDEPPYFINRPLPMQAVVQLNAPPNTPVFTLQARDPDT  142 (419)
T ss_dssp             CCGGGSCTTCEEEEEEEEEC--CCSSSCCEEEEEEEEEEECCCCSCCEECCSSSSCEEEECTTCCTTCEEEECCEECSST
T ss_pred             cCccccCccceEEEEEEEEeCCCCCCCCCcceEEEEEEEEECCCCCCcccCCCCcEEEEEeCCCCCCCEEEEEEEECCCC
Confidence            478887   689999999998865   67888999999999999999999887  8999999999999999999999997


Q ss_pred             -CeeEEEEec-CCCCCEEEcC-cccEEEcccCCcccCcEEEEEEEEecCC-------ceeEEEEEEEEeecCCCCCcccC
Q psy4697          75 -LRVKYWLSN-DYGERFSISR-QGDISLMQCLDYETEDSYRFTVYATDTL-------MTTSATVNISVVNVNDWDPRFRY  144 (383)
Q Consensus        75 -~~v~Ysi~~-~~~~~F~Id~-tG~I~~~~~LD~E~~~~y~~~V~A~D~~-------~~s~~tV~I~V~DvNDn~P~f~~  144 (383)
                       ..++|+|.. +..++|.|++ +|.|++.+.||||....|.|+|+|+|++       ++++++++|.|.| |||+|.|..
T Consensus       143 g~n~~y~i~~~~~~~~F~I~~~tG~i~~~~~ld~e~~~~y~l~V~A~D~g~~~~~~~~~~t~~v~I~V~d-ndn~P~F~~  221 (419)
T 3ubh_A          143 DHNIHYFIVRDRTGGRFEVDERSGVVRTRGTDLFQLDMEYVLYVKAEDQNGKVDDRRFQSTPEERLSIVG-GKRAPQFYM  221 (419)
T ss_dssp             TCCEEEEEEEESSSSCEEECTTTCEEEECSSSCCCBTCEEEEEEEEEEEEEEC--CCEEECCCEEEEEEE-SCCCCEESS
T ss_pred             CceeEEEEEeCCCCCeEEEeCCceEEEEecccccccccEEEEEEEEEECCCCccCcccccceEEEEEEEC-CCCCCceec
Confidence             569999986 5567999996 9999999999999999999999999964       4678889999999 999999999


Q ss_pred             CceeEEEeccCCCCCCCCceEEEEEeeeCCCCCeEEEEEe--CCCCCCEEEcC-CCcEEEecc-CCCCcc---eEEEEEE
Q psy4697         145 PQYELFLPHIPLADLTPGSVIGKVEAADGDKGDRVTLSLR--GPYEKMFSIND-SGHISIVDL-SALNTS---TIQLVVV  217 (383)
Q Consensus       145 ~~~~~~v~~~~~e~~~~g~~v~~v~A~D~D~g~~i~ysi~--~~~~~~F~i~~-tG~i~l~~~-~~~~~~---~y~L~V~  217 (383)
                      +.|.+.|+    |+.++|+.|++|.|+|+| +..++|+|.  ++..++|.|++ +|.|++.+. +++...   .|.|.|.
T Consensus       222 ~~y~~~v~----En~~~gt~v~~v~A~D~d-n~~i~Ysi~~~~~~~~~F~I~~~tG~i~~~~~LD~E~~~~~~~y~l~V~  296 (419)
T 3ubh_A          222 PSYEAEIP----ENQKKDSDIISIKAKSFA-DREIRYTLKAQGQGAGTFNIGPTSGIVKLAKELDFEDLRQPHVYSLIVT  296 (419)
T ss_dssp             SCEEEEEE----TTCCTTCEEEECCEECSS-CCCCEEEEEESSSCCSSEEECTTTCEEEECSCCCTTCTTSCSEEEEEEE
T ss_pred             CeeEEEec----CCCCCCcEEEEEEEecCC-CCceEEEEecCCCCCCcEEEECCCCEEEECcccCccccccccEEEEEEE
Confidence            99999999    999999999999999998 567999995  56678999997 999998764 555543   7999999


Q ss_pred             EeeCCCCCceeEEEEEEEEeCCcccCcccccCC
Q psy4697         218 ATDTGNPPRQASVPAIMHFPEAIVQQASSKLNS  250 (383)
Q Consensus       218 a~D~g~p~~sst~tv~I~v~~~~~~~~p~~~~~  250 (383)
                      |+|.+ ++++++++|+|.| .+.|+++|.|...
T Consensus       297 a~dd~-~~~s~~~~v~I~V-~DvNDn~P~f~~~  327 (419)
T 3ubh_A          297 ATEDS-GGFSTSVDLTIRV-TDVNDNAPKFELP  327 (419)
T ss_dssp             EECTT-TSCEEEEEEEEEE-ECCCCCCCEESSS
T ss_pred             EEeCC-CCcEEEEEEEEEE-EccCCCCCcccCC
Confidence            99754 5689999999999 8899999998643

>3mvs_A Cadherin-23, otocadherin; adhesion, extracellular domain, cell adhesion; 1.10A {Mus musculus} PDB: 4apx_A* 2whv_A 2wcp_A* 4aq8_A 4axw_A* 4aqe_A* 4aqa_A* 2wd0_A* 2wbx_A

Probab=100.00  E-value=2.3e-37  Score=281.62  Aligned_cols=198  Identities=24%  Similarity=0.305  Sum_probs=181.1

Q ss_pred             CCCCeeecCcEE--EEEECCCCCCcEEEEEEeEeCCCCeeEEEEec-CCCCCEEEcC-cccEEEcccCCcccCcEEEEEE
Q psy4697          40 LRELQFSKNEYS--VSALENLPVNYVLLTVTTNKPRDLRVKYWLSN-DYGERFSISR-QGDISLMQCLDYETEDSYRFTV  115 (383)
Q Consensus        40 dn~P~F~~~~y~--~~V~En~~~gt~v~~v~A~D~D~~~v~Ysi~~-~~~~~F~Id~-tG~I~~~~~LD~E~~~~y~~~V  115 (383)
                      |+||+|.+..|.  ++|+||.++|+.|+++.|+|+|++.++|+|.+ +..++|.|++ +|.|++.++||||....|.|.|
T Consensus         3 n~~P~F~~~~y~~~~~V~E~~~~Gt~v~~v~A~D~D~~~~~y~i~~~~~~~~F~Id~~tG~i~~~~~LD~E~~~~y~l~v   82 (210)
T 3mvs_A            3 NRLPFFTNHFFDTYLLISEDTPVGSSVTQLLARDMDNDPLVFGVSGEEASRFFAVEPDTGVVWLRQPLDRETKSEFTVEF   82 (210)
T ss_dssp             CCCCEECCGGGTSCEEEETTCCTTCEEEECCEECTTCCCCEEEEESHHHHHHEEECTTTCEEEESSCCCTTTCCEEEEEE
T ss_pred             CCCCccCCCccceEEEEeCCCCCCCEEEEEEEEeCCCCcEEEEEeCCCCCCcEEEeCCCCEEEECCccCCcccceEEEEE
Confidence            459999999997  79999999999999999999999999999987 3446899996 9999999999999999999999


Q ss_pred             EEecCCceeEEEEEEEEeecCCCCCcccCCceeEEEeccCCCCCCCCceEEEEEeeeCCCCC--eEEEEEeCCCCCCEEE
Q psy4697         116 YATDTLMTTSATVNISVVNVNDWDPRFRYPQYELFLPHIPLADLTPGSVIGKVEAADGDKGD--RVTLSLRGPYEKMFSI  193 (383)
Q Consensus       116 ~A~D~~~~s~~tV~I~V~DvNDn~P~f~~~~~~~~v~~~~~e~~~~g~~v~~v~A~D~D~g~--~i~ysi~~~~~~~F~i  193 (383)
                      .|+|++..++++|.|+|.|+|||+|.|....|.+.++    |+.++|+.|+++.|+|+|.|.  .++|+|.+ ..++|.|
T Consensus        83 ~a~D~~~~~~~~v~I~V~DvNDn~P~f~~~~y~~~v~----E~~~~gt~v~~v~A~D~D~g~n~~v~Y~i~~-~~~~F~I  157 (210)
T 3mvs_A           83 SVSDHQGVITRKVNIQVGDVNDNAPTFHNQPYSVRIP----ENTPVGTPIFIVNATDPDLGAGGSVLYSFQP-PSPFFAI  157 (210)
T ss_dssp             EEECSSCEEEEEEEEEEECCCCCCCEECSCSEEEEEE----TTCCTTCEEEECCEECCSSGGGGCEEEEESS-CCSSEEE
T ss_pred             EEEeCCCCEEEEEEEEEEeCCCCCCcCCCceEEEEEE----CCCCCCCEEEEEEEEeCCCCCCceEEEEEeC-CCCCEEE
Confidence            9999987888999999999999999999999999999    999999999999999999986  79999974 4569999


Q ss_pred             cC-CCcEEEec-cCCCCcceEEEEEEEeeCC-CCCceeEEEEEEEEeCCcccC
Q psy4697         194 ND-SGHISIVD-LSALNTSTIQLVVVATDTG-NPPRQASVPAIMHFPEAIVQQ  243 (383)
Q Consensus       194 ~~-tG~i~l~~-~~~~~~~~y~L~V~a~D~g-~p~~sst~tv~I~v~~~~~~~  243 (383)
                      ++ +|.|++.+ ++++....|.|.|.|+|+| .|+++++++|.|.| .+.|++
T Consensus       158 d~~tG~i~~~~~LD~E~~~~y~l~V~a~D~g~~~~~s~~~~v~I~V-~DvND~  209 (210)
T 3mvs_A          158 DSARGIVTVIQELDYEVTQAYQLTVNATDQDKTRPLSTLANLAIII-TDMQDM  209 (210)
T ss_dssp             CTTTCEEEECSCCCTTTCSEEEEEEEEEECCSSSCCEEEEEEEEEE-ECCCCC
T ss_pred             eCCcEEEEECCcCCCcccceEEEEEEEEECCCCCCCEEEEEEEEEE-EccCCC
Confidence            97 99999866 4788899999999999998 57899999999999 666654

>2x2u_A Proto-oncogene tyrosine-protein kinase receptor RET; hirschsprung disease, extracellular domain, disease mutation, transferase, glycoprotein; HET: NAG SO4; 2.00A {Homo sapiens}

Probab=100.00  E-value=3.2e-36  Score=280.48  Aligned_cols=200  Identities=17%  Similarity=0.070  Sum_probs=175.9

Q ss_pred             eeecCcEEEEEECCCCCCcEEEEEEeEeCCCC-eeEEEEe----------cCCCCCEEEcC-cccEEEcccCCcccCcEE
Q psy4697          44 QFSKNEYSVSALENLPVNYVLLTVTTNKPRDL-RVKYWLS----------NDYGERFSISR-QGDISLMQCLDYETEDSY  111 (383)
Q Consensus        44 ~F~~~~y~~~V~En~~~gt~v~~v~A~D~D~~-~v~Ysi~----------~~~~~~F~Id~-tG~I~~~~~LD~E~~~~y  111 (383)
                      +|.+..|.++|+||.++|+.|++|.|+|+|.+ .+.|+|.          .....+|.|++ +|.|++.++||||....|
T Consensus         2 ~F~~~~Y~~~V~E~~~~Gt~v~~v~A~D~D~g~~~~~~i~~~~~~~y~i~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y   81 (246)
T 2x2u_A            2 YFSRDAYWEKLYVDQAAGTPLLYVHALRDAPEEVPSFRLGQHLYGTYRTRLHENNWIRIQEDTGLLYLQRSLDHSSWEKL   81 (246)
T ss_dssp             EESCSEEEEEEETTBCTTCEEEECCEECSSTTCCCCCEECSEEECGGGCEEEECCSEEECTTTCEEEESSCBCHHHHHHH
T ss_pred             CccCCceEEEeeCCCCCCCEEEEEEEEcCCCCCcceEEEeeccccceeccCCCCCEEEECCCcEEEEECCcCChhHhhhh
Confidence            69999999999999999999999999999973 4555554          23457899996 999999999999999999


Q ss_pred             ------------EEEEEEecCC-----ceeEEEEEEEEeecCCCCCc----------ccCCceeEEEeccCCCCCCCCce
Q psy4697         112 ------------RFTVYATDTL-----MTTSATVNISVVNVNDWDPR----------FRYPQYELFLPHIPLADLTPGSV  164 (383)
Q Consensus       112 ------------~~~V~A~D~~-----~~s~~tV~I~V~DvNDn~P~----------f~~~~~~~~v~~~~~e~~~~g~~  164 (383)
                                  .|+|.|+|++     ++++++|.|+|.|+|||+|+          |..+.|.+.|+    |+.++|+.
T Consensus        82 ~~~~~G~p~~~~~l~V~a~D~g~~~~~~~~~~~v~I~V~DvNDn~P~~~~~~~~~~~F~~~~y~~~v~----En~~~Gt~  157 (246)
T 2x2u_A           82 SVRNRGFPLLTVYLKVFLSPTSLREGECQWPGCARVYFSFFNTSFPACSSLKPRELCFPETRPSFRIR----ENRPPGTF  157 (246)
T ss_dssp             HHTSTTSCCCEEEEEEECC-------CCCTTTEEEEEEEEESSCCCCGGGCCHHHHHSCSSCCCEEEE----BTSCCCEE
T ss_pred             ccccCCCcccceEEEEEEEcCCCCCCcccceEEEEEEEEECCCCCCccccccccccccCCCcEEEEEE----CCCCCCcE
Confidence                        9999999975     46789999999999999999          99999999999    99999999


Q ss_pred             EEEEEeeeCCCCC--eEEEEEeCCCCCCEEEcC-CCcEEEec-cCCCCcceEEEEEEEee-CCCCCceeEEEEEEEEeCC
Q psy4697         165 IGKVEAADGDKGD--RVTLSLRGPYEKMFSIND-SGHISIVD-LSALNTSTIQLVVVATD-TGNPPRQASVPAIMHFPEA  239 (383)
Q Consensus       165 v~~v~A~D~D~g~--~i~ysi~~~~~~~F~i~~-tG~i~l~~-~~~~~~~~y~L~V~a~D-~g~p~~sst~tv~I~v~~~  239 (383)
                      |+++.|+|+|.|.  .++|+|.+....+|.|++ +|.|++.+ ++++....|.|.|.|+| .|.|+++++++|.|.| .+
T Consensus       158 v~~v~A~D~D~g~n~~i~Y~i~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~V~A~d~dg~p~~ss~~~v~I~V-~D  236 (246)
T 2x2u_A          158 HQFRLLPVQFLCPQISVAYRLLEGEGLPFRSAPDSLEVSTRWALDREQREKYELVAVCTVHAGAREEVVMVPFPVTV-YD  236 (246)
T ss_dssp             EECSCHHHHHHCTTSCEEEEEESCTTSSEECCTTCCEEEESSCBCTTTCSEEEEEEEEEEC---CCEEEEEEEEEEE-EC
T ss_pred             EEEEEEEcCCCCCCcEEEEEEccCCCCCEEEECCcCEEEeCCccCccccceEEEEEEEEecCCCCcceEEEEEEEEE-EE
Confidence            9999999999986  699999865578999998 99999876 48888999999999998 6779999999999999 88


Q ss_pred             cccCccccc
Q psy4697         240 IVQQASSKL  248 (383)
Q Consensus       240 ~~~~~p~~~  248 (383)
                      .|+++|.|.
T Consensus       237 vNDn~P~F~  245 (246)
T 2x2u_A          237 EDDSAPEFE  245 (246)
T ss_dssp             SSCCSCCCC
T ss_pred             eCCCCCccC
Confidence            999999874

>2a4e_A Cadherin-11; dimer, calcium binding, cell adhesion; 3.20A {Mus musculus}

Probab=100.00  E-value=2.7e-33  Score=255.57  Aligned_cols=190  Identities=21%  Similarity=0.308  Sum_probs=165.0

Q ss_pred             cEEEEEECCC--CCCcEEEEEEeEeCCC--CeeEEEEecCC-CCCEEEcC-cccEEEcccCCcccCcEEEEEEEEecCC-
Q psy4697          49 EYSVSALENL--PVNYVLLTVTTNKPRD--LRVKYWLSNDY-GERFSISR-QGDISLMQCLDYETEDSYRFTVYATDTL-  121 (383)
Q Consensus        49 ~y~~~V~En~--~~gt~v~~v~A~D~D~--~~v~Ysi~~~~-~~~F~Id~-tG~I~~~~~LD~E~~~~y~~~V~A~D~~-  121 (383)
                      .|.++|.||.  |.|+.|+++ |+|+|.  +.++|+|.+.. ..+|.|++ +|.|++.++||||....|.|+|.|+|++ 
T Consensus         5 ~~~~~v~En~~~p~~~~v~~v-a~D~D~gn~~i~Y~l~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~v~a~D~~~   83 (215)
T 2a4e_A            5 WNQFFVIEEYTGPDPVLVGRL-HSDIDSGDGNIKYILSGEGAGTIFVIDDKSGNIHATKTLDREERAQYTLMAQAVDRDT   83 (215)
T ss_dssp             CCEEEEETTCCSSSCEEEEEC-CCTTCCSSSCEEEEEEETTBTTTEEECTTTCEEEECSCCCTTTCSEEEEEEEEEETTT
T ss_pred             EeeEEEeccCCCCCCEEEEEE-EECCCCCCCeEEEEEECCCCCCeEEEECCceEEEECCccCCccCCEEEEEEEEEECCC
Confidence            4688999994  679999988 899996  78999998753 46899997 9999999999999999999999999975 


Q ss_pred             ---ceeEEEEEEEEeecCCCCCcccCCceeEEEeccCCCCCCCCceEEEEEeeeCCC---CC--eEEEEEeCCCCCCEEE
Q psy4697         122 ---MTTSATVNISVVNVNDWDPRFRYPQYELFLPHIPLADLTPGSVIGKVEAADGDK---GD--RVTLSLRGPYEKMFSI  193 (383)
Q Consensus       122 ---~~s~~tV~I~V~DvNDn~P~f~~~~~~~~v~~~~~e~~~~g~~v~~v~A~D~D~---g~--~i~ysi~~~~~~~F~i  193 (383)
                         +++.++|.|+|.|+|||+|.|..+.|.+.++    |+.++|+.|+++.|+|+|.   |.  .++|+|.+. +..|.|
T Consensus        84 ~~~~~~~~~v~I~V~DvNDn~P~F~~~~y~~~v~----E~~~~Gt~v~~v~A~D~D~~~~G~n~~i~Y~i~~~-~~~F~I  158 (215)
T 2a4e_A           84 NRPLEPPSEFIVKVQDINDNPPEFLHEIYHANVP----ERSNVGTSVIQVTASDADDPTYGNSAKLVYSILEG-QPYFSV  158 (215)
T ss_dssp             CCEEEEEEEEEEEEECCCCCCCEESSSSEEEEEE----TTCCTTCEEEECCEECSSCTTTCSSSCCEEEEEES-TTTEEE
T ss_pred             CCcccccEEEEEEEeeCCCCCCCccCCceEEEEE----CCCCCCCEEEEEEEEECCCCCCCCceEEEEEEeCC-CCcEEE
Confidence               5778999999999999999999999999999    9999999999999999997   65  699999743 368999


Q ss_pred             cC-CCcEEEe-c-cCCCCcceEEEEEEEeeCCCC--CceeEEEEEEEEeCCcccCcc
Q psy4697         194 ND-SGHISIV-D-LSALNTSTIQLVVVATDTGNP--PRQASVPAIMHFPEAIVQQAS  245 (383)
Q Consensus       194 ~~-tG~i~l~-~-~~~~~~~~y~L~V~a~D~g~p--~~sst~tv~I~v~~~~~~~~p  245 (383)
                      ++ +|.|++. + ++++....|.|.|.|+|+|.|  +++++++|+|.| .+.|+++|
T Consensus       159 d~~tG~I~~~~~~LD~E~~~~y~l~V~A~D~g~~~~~~s~~~~v~I~V-~DvNDn~P  214 (215)
T 2a4e_A          159 EAQTGIIRTALPNMDREAKEEYHVVIQAKDMGGHMGGLSGTTKVTITL-TDDYKDDD  214 (215)
T ss_dssp             CTTTCEEEECSSCCCSSSCSEEEEEEEEETTTTCTTCCEEEEEEEEEE-EC------
T ss_pred             eCCccEEEEcccCCCcccCCEEEEEEEEEECCCCCCCceeEEEEEEEE-EECCCCCC
Confidence            98 9999987 4 578888999999999999987  689999999999 77888776

>3qrb_A Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus musculus} PDB: 1ff5_A 3lng_A 2qvf_B 1edh_A 3lne_A 1q1p_A 3lni_A 3q2l_A* 3q2n_A* 3lnh_A 3lnf_A 2o72_A 1suh_A

Probab=100.00  E-value=1.5e-32  Score=250.22  Aligned_cols=183  Identities=24%  Similarity=0.310  Sum_probs=164.6

Q ss_pred             EEEEEECCCC--CCcEEEEEEeEeCCC-CeeEEEEec-----CCCCCEEEcC-cccEEEcccCCcccCcEEEEEEEEecC
Q psy4697          50 YSVSALENLP--VNYVLLTVTTNKPRD-LRVKYWLSN-----DYGERFSISR-QGDISLMQCLDYETEDSYRFTVYATDT  120 (383)
Q Consensus        50 y~~~V~En~~--~gt~v~~v~A~D~D~-~~v~Ysi~~-----~~~~~F~Id~-tG~I~~~~~LD~E~~~~y~~~V~A~D~  120 (383)
                      ..++|+||.+  .|+.|+++.| |+|. +.++|+|.+     ++.++|.|++ +|.|++.++||||....|.|.|.|+|+
T Consensus         5 ~~~~V~En~~~~~~~~v~~v~a-D~d~n~~v~Ysi~~~~~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~v~a~D~   83 (213)
T 3qrb_A            5 AAISCPENEKGEFPKNLVQIKS-NRDKETKVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSS   83 (213)
T ss_dssp             EEEEEETTCCSSSSEEEEECCC-GGGGTSCEEEEEESBTTTBSSTTSEEECTTTCEEEECSCCCTTTCSEEEEEEEEEET
T ss_pred             CCEEEeCCCCCCCCcEEEEEEE-CCCCCceEEEEEEcCCCCCCCCCeEEEECCCCEEEECCccCcccCceEEEEEEEEeC
Confidence            3689999998  6788999999 8775 899999987     2345899997 999999999999999999999999996


Q ss_pred             C---ceeEEEEEEEEeecCCCCCcccCCceeEEEeccCCCCCCCCceEEEEEeeeCCCC---C--eEEEEEeC-C----C
Q psy4697         121 L---MTTSATVNISVVNVNDWDPRFRYPQYELFLPHIPLADLTPGSVIGKVEAADGDKG---D--RVTLSLRG-P----Y  187 (383)
Q Consensus       121 ~---~~s~~tV~I~V~DvNDn~P~f~~~~~~~~v~~~~~e~~~~g~~v~~v~A~D~D~g---~--~i~ysi~~-~----~  187 (383)
                      +   ++++++|.|+|.|+|||+|.|..+.|.+.|+    |+.++|+.|+++.|+|+|.|   .  .++|+|.+ +    .
T Consensus        84 ~~~~~~~~~~v~I~V~DvNDn~P~F~~~~y~~~v~----En~~~gt~v~~v~A~D~D~~~~~~n~~i~Y~i~~~~~~~~~  159 (213)
T 3qrb_A           84 NGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVA----EGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPH  159 (213)
T ss_dssp             TSCBCSCCEEEEEEEECCSCCCCEESCSEEEEEEE----TTCCTTCEEEECCEECCSCTTTSSTTCCEEEEEEEESCCSC
T ss_pred             CCCcccceEEEEEEEEEccCCCCccCCCceEEEEE----CCCCCCcEEEEEEEEeCCCCCCCcCcEEEEEEccCCCCCCc
Confidence            5   6788999999999999999999999999999    99999999999999999998   3  69999963 2    4


Q ss_pred             CCCEEEcC-CCcEEEe-c-cCCCCcceEEEEEEEeeCCCCCceeEEEEEEEEe
Q psy4697         188 EKMFSIND-SGHISIV-D-LSALNTSTIQLVVVATDTGNPPRQASVPAIMHFP  237 (383)
Q Consensus       188 ~~~F~i~~-tG~i~l~-~-~~~~~~~~y~L~V~a~D~g~p~~sst~tv~I~v~  237 (383)
                      ...|.|++ +|.|++. . ++++....|.|.|.|+|+|.|+++++++|+|.|.
T Consensus       160 ~~~F~Id~~tG~i~~~~~~LD~E~~~~y~l~V~A~D~g~~~~s~t~~v~I~V~  212 (213)
T 3qrb_A          160 KNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVK  212 (213)
T ss_dssp             SCSEEECTTTCEEEECSSCCCTTTCCEEEEEEEEETGGGTSCEEEEEEEEEEE
T ss_pred             CCeEEEECCCcEEEEccCCCCCccCceEEEEEEEEeCCCCCceEEEEEEEEEE
Confidence            56899997 9999885 3 5888899999999999999999999999999984

>3k5r_A Cadherin 13; mouse, structural protein; 2.00A {Mus musculus} PDB: 3k5s_A

Probab=100.00  E-value=1.9e-32  Score=250.49  Aligned_cols=182  Identities=23%  Similarity=0.306  Sum_probs=163.2

Q ss_pred             EEEEECCCCCC--cEEEEEEeEeCCCCeeEEEEec-----CCCCCEEEcC-cccEEEcccCCcccCcEEEEEEEEecCC-
Q psy4697          51 SVSALENLPVN--YVLLTVTTNKPRDLRVKYWLSN-----DYGERFSISR-QGDISLMQCLDYETEDSYRFTVYATDTL-  121 (383)
Q Consensus        51 ~~~V~En~~~g--t~v~~v~A~D~D~~~v~Ysi~~-----~~~~~F~Id~-tG~I~~~~~LD~E~~~~y~~~V~A~D~~-  121 (383)
                      .++|+||.++|  ..++++.|.|+|. .++|+|.+     +..++|.|++ +|.|++.++||||....|.|+|.|+|++ 
T Consensus         7 ~~~V~En~~~g~~~~v~~v~a~D~d~-~i~Y~i~~~~~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~v~a~D~g~   85 (218)
T 3k5r_A            7 PILIPENQRQPFPRDVGKVVDSDRPE-GSKFRLTGKGVDQDPKGTFRINENTGSVSVTRTLDRETIATYQLYVETTDASG   85 (218)
T ss_dssp             CEEEETTCCSSCCEEEEECBCTTCCT-TCEEEEEEBTTTBSSTTSEEECTTTCEEEECSCCCTTTCSEEEEEEEEECSSS
T ss_pred             cEEEecCCCCCCCEEEEEEEecCCCc-eEEEEEEcCCCCCCCCCeEEEeCCceEEEECCcCCcccCCEEEEEEEEEECCC
Confidence            58999999998  8899999999886 89999975     3457999997 9999999999999999999999999976 


Q ss_pred             --ceeEEEEEEEEeecCCCCCcccCCceeEEEeccCCCCCCCCceEEEEEeeeCCC--CC--eEEEEEeCC-C----CCC
Q psy4697         122 --MTTSATVNISVVNVNDWDPRFRYPQYELFLPHIPLADLTPGSVIGKVEAADGDK--GD--RVTLSLRGP-Y----EKM  190 (383)
Q Consensus       122 --~~s~~tV~I~V~DvNDn~P~f~~~~~~~~v~~~~~e~~~~g~~v~~v~A~D~D~--g~--~i~ysi~~~-~----~~~  190 (383)
                        ++++++|.|+|.|+|||+|.|..+.|.+.|+    |+.++|+.|++|.|+|+|.  |.  .++|+|.+. .    .++
T Consensus        86 ~~~~~~~~v~I~V~DvNDn~P~F~~~~y~~~v~----E~~~~gt~v~~v~A~D~D~~~g~n~~i~Y~i~~~~~~~~~~~~  161 (218)
T 3k5r_A           86 KTLEGPVPLEVIVIDQNDNRPIFREGPYIGHVM----EGSPTGTTVMRMTAFDADDPATDNALLRYNIRQQTPDKPSPNM  161 (218)
T ss_dssp             CEEEEEEEEEEEEECTTCCCCCCCSCSEEEEEE----TTCCTTCEEEECCCSCSSSSCGGGGCEEEEEEEEESCCSCSCS
T ss_pred             CceeeeEEEEEEEEeCCCCCCcccCCceEEEEE----CCCCCCCEEEEEEEEeCCCCCCCCcEEEEEEecCCCCCCcCCE
Confidence              6788999999999999999999999999999    9999999999999999998  43  699999732 2    267


Q ss_pred             EEEcC-CCcEEEe----ccCCCC--cceEEEEEEEeeCC--CCCceeEEEEEEEEe
Q psy4697         191 FSIND-SGHISIV----DLSALN--TSTIQLVVVATDTG--NPPRQASVPAIMHFP  237 (383)
Q Consensus       191 F~i~~-tG~i~l~----~~~~~~--~~~y~L~V~a~D~g--~p~~sst~tv~I~v~  237 (383)
                      |.|++ +|.|++.    .++++.  ...|.|.|.|+|+|  .|+++++++|+|+|.
T Consensus       162 F~Id~~tG~i~~~~~~~~LD~E~~~~~~y~l~V~a~D~gg~~p~~sst~~v~I~V~  217 (218)
T 3k5r_A          162 FYIDPEKGDIVTVVSPALLDRETLENPKYELIIEAQDMAGLDVGLTGTATATIVID  217 (218)
T ss_dssp             EEECTTTCEEEECSCGGGCCGGGCSCSEEEEEEEEEECSSTTTTCEEEEEEEEEEE
T ss_pred             EEEECCccEEEEeccCCCCCccccCCCeEEEEEEEEECCCCCCCeeEEEEEEEEEE
Confidence            99997 9999875    357777  66999999999999  899999999999984

>2qvi_A Cadherin-2; beta barrel, strand SWAP, domain SWAP, calcium, cell adhesion, cleavage on PAIR of basic residues, glycoprotein, membrane; 3.01A {Mus musculus} SCOP: b.1.6.1 b.1.6.1 PDB: 1ncj_A

Probab=100.00  E-value=4.8e-32  Score=247.30  Aligned_cols=182  Identities=21%  Similarity=0.307  Sum_probs=162.8

Q ss_pred             EEEEECCCCCCcEEEEEEeEeCCC---CeeEEEEecC-----CCCCEEEcC-cccEEEcccCCcccCcEEEEEEEEecCC
Q psy4697          51 SVSALENLPVNYVLLTVTTNKPRD---LRVKYWLSND-----YGERFSISR-QGDISLMQCLDYETEDSYRFTVYATDTL  121 (383)
Q Consensus        51 ~~~V~En~~~gt~v~~v~A~D~D~---~~v~Ysi~~~-----~~~~F~Id~-tG~I~~~~~LD~E~~~~y~~~V~A~D~~  121 (383)
                      .++|+||.+ |+.++++.|.|.|.   +.++|+|.+.     ..++|.|++ +|.|++.++||||....|.|+|.|+|++
T Consensus         6 ~~~V~En~~-g~~~~~v~~~~~D~~~n~~v~Ysi~~~~~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~v~a~D~g   84 (215)
T 2qvi_A            6 PINLPENSR-GPFPQELVRIRSDRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLDRELIARFHLRAHAVDIN   84 (215)
T ss_dssp             CEEEESSCC-CCSSEEEEECCCGGGGTSCEEEEEESTTSSSTTCSSEEECTTTCEEEECSCCCTTTCSEEEEEEEEEETT
T ss_pred             cEEEcCCCC-CCCCEEEEEEeCCCCCCceEEEEEECCCCCCCCCCcEEEeCCccEEEECcccCcccCCeEEEEEEEEECC
Confidence            579999998 88888888877764   8999999873     357899996 9999999999999999999999999976


Q ss_pred             ---ceeEEEEEEEEeecCCCCCcccCCceeEEEeccCCCCCCCCceEEEEEeeeCCC--CC--eEEEEEeC-C----CCC
Q psy4697         122 ---MTTSATVNISVVNVNDWDPRFRYPQYELFLPHIPLADLTPGSVIGKVEAADGDK--GD--RVTLSLRG-P----YEK  189 (383)
Q Consensus       122 ---~~s~~tV~I~V~DvNDn~P~f~~~~~~~~v~~~~~e~~~~g~~v~~v~A~D~D~--g~--~i~ysi~~-~----~~~  189 (383)
                         ++++++|.|+|.|+|||+|.|..+.|.+.++    |+.++|+.|+++.|+|+|.  |.  .++|+|.+ +    ...
T Consensus        85 ~~~~~~~~~v~I~V~DvNDn~P~F~~~~y~~~v~----En~~~gt~v~~v~A~D~D~~~g~n~~i~Y~i~~~~~~~~~~~  160 (215)
T 2qvi_A           85 GNQVENPIDIVINVIDMNDNRPEFLHQVWNGSVP----EGSKPGTYVMTVTAIDADDPNALNGMLRYRILSQAPSTPSPN  160 (215)
T ss_dssp             TCCCEEEEEEEEEEECCCCCCCBCSSSEEEEEEC----SSCCTTCEEEECCCBCSSCTTSTTTCCCCEEEECSSCCSSTT
T ss_pred             CCceeeeEEEEEEEeECCCCCCcccCceeEEEEe----CCCCCCCEEEEEEEEeCCCCCCCCcEEEEEEecCCCCCCcCC
Confidence               6789999999999999999999999999999    9999999999999999998  43  69999973 3    357


Q ss_pred             CEEEcC-CCcEEEe--ccCCCCcceEEEEEEEeeCCCC---CceeEEEEEEEEe
Q psy4697         190 MFSIND-SGHISIV--DLSALNTSTIQLVVVATDTGNP---PRQASVPAIMHFP  237 (383)
Q Consensus       190 ~F~i~~-tG~i~l~--~~~~~~~~~y~L~V~a~D~g~p---~~sst~tv~I~v~  237 (383)
                      .|.|++ +|.|++.  .++++....|.|.|.|+|+|.|   +++++++|+|.|.
T Consensus       161 ~F~Id~~tG~i~~~~~~LD~E~~~~y~l~V~a~D~g~~p~~~ls~t~~v~I~V~  214 (215)
T 2qvi_A          161 MFTINNETGDIITVAAGLDREKVQQYTLIIQATDMEGNPTYGLSNTATAVITVT  214 (215)
T ss_dssp             CEEECTTTCEEEECSCCCCTTTCSEEEEEEECCTTTTCTTTSCCCEEEEEEEEC
T ss_pred             eEEEcCCCcEEEEecCCCCcccCCeEEEEEEEEECCCCCCCCcceEEEEEEEEE
Confidence            999998 9999984  3578888999999999999888   7999999999984

>3ppe_A Vascular endothelial cadherin; extracellular cadherin (EC) domain, beta barrel, IG-domain L domain swapped dimer interface; 2.10A {Gallus gallus}

Probab=100.00  E-value=1.6e-31  Score=241.82  Aligned_cols=182  Identities=22%  Similarity=0.316  Sum_probs=163.4

Q ss_pred             EEEEEECCCCCC--cEEEEEEeEeCCCCeeEEEEecC-CCCCEEEcC-cccEEEcccCCcccCcEEEEEEEEecCC----
Q psy4697          50 YSVSALENLPVN--YVLLTVTTNKPRDLRVKYWLSND-YGERFSISR-QGDISLMQCLDYETEDSYRFTVYATDTL----  121 (383)
Q Consensus        50 y~~~V~En~~~g--t~v~~v~A~D~D~~~v~Ysi~~~-~~~~F~Id~-tG~I~~~~~LD~E~~~~y~~~V~A~D~~----  121 (383)
                      ..++|+||.+.|  ..++++. +|+|.+.-+|+|.+. ..++|.|++ +|.|++.++||||....|.|+|.|+|++    
T Consensus         5 ~~~~V~En~~~~~~~~v~~v~-~D~D~g~~~Y~i~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~v~a~D~g~~~~   83 (203)
T 3ppe_A            5 NRMHIREEIDSPLPHHVGKLT-SSVGNKNAMYIIEGESANTIFKVQGYDGDIYAFERLDREKKAEYELTAHIIDRRNNRS   83 (203)
T ss_dssp             SEEEEETTCCSSSCEEEEECC-BCCCCTTEEEEEEETTBTTTEEEETTTTEEEESSCCCTTTCCEEEEEEEEEETTTTEE
T ss_pred             ccEEEEccCCCCCCEEEEEEE-ecCCCCCcEEEEecCCCCCeEEEECCcCEEEECccccccccceEEEEEEEEECCCCCc
Confidence            468999999988  8899998 899985459999874 456999997 8999999999999999999999999975    


Q ss_pred             ceeEEEEEEEEeecCCCCCcccCCceeEEEeccCCCCCCCCceEEEEEeeeCCC---CC--eEEEEEeCCCCCCEEEcCC
Q psy4697         122 MTTSATVNISVVNVNDWDPRFRYPQYELFLPHIPLADLTPGSVIGKVEAADGDK---GD--RVTLSLRGPYEKMFSINDS  196 (383)
Q Consensus       122 ~~s~~tV~I~V~DvNDn~P~f~~~~~~~~v~~~~~e~~~~g~~v~~v~A~D~D~---g~--~i~ysi~~~~~~~F~i~~t  196 (383)
                      +++.++|.|+|.|+|||+|.|..+.|.+.|+    |+.++|+.|+++.|+|+|.   |.  .++|+|.+. +..|.|+.+
T Consensus        84 ~~~~~~v~I~V~DvNDn~P~F~~~~y~~~v~----E~~~~gt~v~~v~A~D~D~~~~g~n~~i~Y~i~~~-~~~F~I~~t  158 (203)
T 3ppe_A           84 LEPPSKFIIKVSDINDNAPIFVQKIFNGSVP----EMSRLGTSVTKVTAEDADDPTVAGHATVTYQIIKG-NEYFTVDDS  158 (203)
T ss_dssp             CSCCEEEEEEEECCCCCCCEESCSEEEEEEE----TTCCTTCEEEECCEECCSCTTSSSTTCEEEEEEES-TTTEEECTT
T ss_pred             ccceEEEEEEEcCCCCCCCCccCCccEEEEe----ccCCCCcEEEEEEEEcCCCcCCCCceEEEEEEeCC-CCcEEEeCC
Confidence            5788999999999999999999999999999    9999999999999999994   54  699999843 359999999


Q ss_pred             CcEEEe-c-cCCCCcceEEEEEEEeeC-CCCCceeEEEEEEEEe
Q psy4697         197 GHISIV-D-LSALNTSTIQLVVVATDT-GNPPRQASVPAIMHFP  237 (383)
Q Consensus       197 G~i~l~-~-~~~~~~~~y~L~V~a~D~-g~p~~sst~tv~I~v~  237 (383)
                      |.|++. . ++++....|.|.|.|+|+ |.|+++++++|.|+|.
T Consensus       159 G~i~~~~~~LD~E~~~~y~l~V~A~D~~G~p~~s~t~~v~I~V~  202 (203)
T 3ppe_A          159 GVIFTARADLDRESQSAYEIIVKAKDALGLTGESSTATVIIRLT  202 (203)
T ss_dssp             SEEEESCSCCCTTTCSEEEEEEEEEETTCCCCSSSEEEEEEEEE
T ss_pred             eEEEECCcCCCcccCCEEEEEEEEEeCCCCCCCeEEEEEEEEEE
Confidence            999986 4 478889999999999998 8899999999999984

>3lnd_A CDH6 protein, cadherin 6; cell adhesion, cell membrane, membrane, transmembr; 2.82A {Mus musculus}

Probab=99.98  E-value=6e-32  Score=245.24  Aligned_cols=181  Identities=24%  Similarity=0.335  Sum_probs=156.0

Q ss_pred             EEEEECCCCCCc--EEEEEEeEeCCC--CeeEEEEecCC-CCCEEEcC-cccEEEcccCCcccCcEEEEEEEEecCC---
Q psy4697          51 SVSALENLPVNY--VLLTVTTNKPRD--LRVKYWLSNDY-GERFSISR-QGDISLMQCLDYETEDSYRFTVYATDTL---  121 (383)
Q Consensus        51 ~~~V~En~~~gt--~v~~v~A~D~D~--~~v~Ysi~~~~-~~~F~Id~-tG~I~~~~~LD~E~~~~y~~~V~A~D~~---  121 (383)
                      .++|+||.+++.  .++.+ |+|+|.  +.++|+|.+.. ..+|.|++ +|.|++.++||||....|.|+|.|+|++   
T Consensus         6 ~~~v~En~~~~~~~~v~~~-a~D~D~g~~~i~Y~l~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~v~a~D~~~~~   84 (207)
T 3lnd_A            6 QFFLLEEYTGSDYQYVGKL-HSDQDRGDGSLKYILSGDGAGDLFIINENTGDIQATKRLDREEKPVYILRAQAVNRRTGR   84 (207)
T ss_dssp             CEEEESCBCSSSCEEEEEC-CCTTCCSSTTBCCCCCSSSBTTTEEECTTTCEEEECSCCCGGGCCEEEC----CBSSSCC
T ss_pred             ccEEEeecCCCCCEEEEEE-EeCCCCCCceEEEEEECCCCCCeEEEECCceEEEECCCcCcccCCEEEEEEEEEECCCCC
Confidence            478999988664  88888 999995  78999998743 45899997 9999999999999999999999999964   


Q ss_pred             -ceeEEEEEEEEeecCCCCCcccCCceeEEEeccCCCCCCCCceEEEEEeeeCCC---CC--eEEEEEeCCCCCCEEEcC
Q psy4697         122 -MTTSATVNISVVNVNDWDPRFRYPQYELFLPHIPLADLTPGSVIGKVEAADGDK---GD--RVTLSLRGPYEKMFSIND  195 (383)
Q Consensus       122 -~~s~~tV~I~V~DvNDn~P~f~~~~~~~~v~~~~~e~~~~g~~v~~v~A~D~D~---g~--~i~ysi~~~~~~~F~i~~  195 (383)
                       ++++++|.|+|.|+|||+|.|..+.|.+.|+    |+.++|+.|+++.|+|+|.   |.  .++|+|.+. +..|.|++
T Consensus        85 ~~~~~~~v~I~V~DvNDn~P~F~~~~y~~~v~----E~~~~gt~v~~v~A~D~D~~~~g~n~~i~Y~i~~~-~~~F~Id~  159 (207)
T 3lnd_A           85 PVEPESEFIIKIHDINDNEPIFTKDVYTATVP----EMADVGTFVVQVTATDADDPTYGNSAKVVYSILQG-QPYFSVES  159 (207)
T ss_dssp             CCSCCCCCEEEEECCSCCCCEESCSEEEEEEE----SSCCTTCEEEECCEECSSCTTSSSTTCCEEEEEES-GGGEEECT
T ss_pred             ccccEEEEEEEECccCCCCCccCCCceEEEEe----CCCCCCCEEEEEEEEeCCCCCCCCCcEEEEEEcCC-CCCEEEcC
Confidence             6788999999999999999999999999999    9999999999999999997   65  699999843 45899997


Q ss_pred             -CCcEEEe-c-cCCCCcceEEEEEEEeeCCCC--CceeEEEEEEEEe
Q psy4697         196 -SGHISIV-D-LSALNTSTIQLVVVATDTGNP--PRQASVPAIMHFP  237 (383)
Q Consensus       196 -tG~i~l~-~-~~~~~~~~y~L~V~a~D~g~p--~~sst~tv~I~v~  237 (383)
                       +|.|++. . ++++....|.|.|.|+|+|.|  +++++++|+|+|.
T Consensus       160 ~tG~i~~~~~~lD~E~~~~y~l~V~A~D~g~~~~~~s~t~~v~I~V~  206 (207)
T 3lnd_A          160 ETGIIKTALLNMDRENREQYQVVIQAKDMGGQMGGLSGTTTVNITLT  206 (207)
T ss_dssp             TTCEEEECCSSCCC--CCEEEEEEEEESGGGCTTCBEEEEEEEEEEE
T ss_pred             CCcEEEECcccCCcccCCEEEEEEEEEECCCCCCCcEeEEEEEEEEe
Confidence             9999987 4 477888999999999999987  8999999999984

>2a62_A Cadherin-8; extracellular domain, homodimer, calcium binding, adhesion; 4.50A {Mus musculus}

Probab=99.97  E-value=1.5e-30  Score=251.28  Aligned_cols=195  Identities=23%  Similarity=0.323  Sum_probs=173.1

Q ss_pred             EEEEEECC--CCCCcEEEEEEeEeCCC--CeeEEEEecC-CCCCEEEcC-cccEEEcccCCcccCcEEEEEEEEecCC--
Q psy4697          50 YSVSALEN--LPVNYVLLTVTTNKPRD--LRVKYWLSND-YGERFSISR-QGDISLMQCLDYETEDSYRFTVYATDTL--  121 (383)
Q Consensus        50 y~~~V~En--~~~gt~v~~v~A~D~D~--~~v~Ysi~~~-~~~~F~Id~-tG~I~~~~~LD~E~~~~y~~~V~A~D~~--  121 (383)
                      +.++|.||  .+.|+.|+++. +|+|.  +.++|+|.+. ...+|.|++ +|.|++.++||||....|.|+|+|+|++  
T Consensus         5 ~~~~v~E~~~~~~~~~v~~va-~D~D~g~~~i~Y~l~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~v~a~D~~~~   83 (322)
T 2a62_A            5 NQMFVLEEFSGPEPILVGRLH-TDLDPGSKKIKYILSGDGAGTIFQINDITGDIHAIKRLDREEKAEYTLTAQAVDFETN   83 (322)
T ss_dssp             CCEECCCSCCCSSCEECCCCC-CCCCCSSCCCEEEEEETTBTTTEEEETTTTEEEECSCCCTTTCSBCCEEEEEECTTTC
T ss_pred             ceeeeccccCCCCCEEEEEEE-EcCCCCCCEEEEEEECCCCCCcEEEeCCcCEEEEeccCCcccccEEEEEEEEEECCCC
Confidence            46788999  88999999985 89985  7899999874 346899996 9999999999999999999999999964  


Q ss_pred             --ceeEEEEEEEEeecCCCCCcccCCceeEEEeccCCCCCCCCceEEEEEeeeCCC---CC--eEEEEEeCCCCCCEEEc
Q psy4697         122 --MTTSATVNISVVNVNDWDPRFRYPQYELFLPHIPLADLTPGSVIGKVEAADGDK---GD--RVTLSLRGPYEKMFSIN  194 (383)
Q Consensus       122 --~~s~~tV~I~V~DvNDn~P~f~~~~~~~~v~~~~~e~~~~g~~v~~v~A~D~D~---g~--~i~ysi~~~~~~~F~i~  194 (383)
                        +++.++|.|+|.|+|||+|.|..+.|.+.|+    |+.++|+.|+++.|+|+|.   |.  .++|+|.++ ..+|.|+
T Consensus        84 ~~~~~~~~v~I~V~DvNDn~P~F~~~~y~~~v~----E~~~~gt~v~~v~A~D~D~~~~G~n~~i~Y~i~~~-~~~F~Id  158 (322)
T 2a62_A           84 KPLEPPSEFIIKVQDINDNAPEFLNGPYHATVP----EMSILGTSVTNVTATDADDPVYGNSAKLVYSILEG-QPYFSIE  158 (322)
T ss_dssp             SEEEEEEEECEECCCCSCSCBCCSSSEEEEEEC----SSCCTTCBCCCCCCCBCSCSSSTTSSCEEEEEEEC-TTTEEEC
T ss_pred             CcccceEEEEEEEEecCCCCCccCCCceEEEEe----CCCCCCCEEEEEEEEeCCCCCCCccEEEEEEEccC-CCCEEEe
Confidence              5678899999999999999999999999999    9999999999999999996   64  699999743 4689999


Q ss_pred             C-CCcEEEe-c-cCCCCcceEEEEEEEeeCCCCC--ceeEEEEEEEEeCCcccCcccccCCC
Q psy4697         195 D-SGHISIV-D-LSALNTSTIQLVVVATDTGNPP--RQASVPAIMHFPEAIVQQASSKLNSG  251 (383)
Q Consensus       195 ~-tG~i~l~-~-~~~~~~~~y~L~V~a~D~g~p~--~sst~tv~I~v~~~~~~~~p~~~~~~  251 (383)
                      + +|.|++. . ++++....|.|.|.|+|+|.|+  ++++++|+|.| .+.|+++|.|....
T Consensus       159 ~~tG~i~~~~~~LD~E~~~~y~l~V~a~D~g~p~~~~s~~~~v~I~V-~DvNDn~P~F~~~~  219 (322)
T 2a62_A          159 PETAIIKTALPNMDREAKEEYLVVIQAKDMGGHSGGLSGTTTLTVTL-TDVNDNPPKFAQSL  219 (322)
T ss_dssp             TTTCCEEECSSCCCGGGCSEEEEEEEEEESCSSSSCCBCCEEEEEEE-CCCCCCCCCCSCSE
T ss_pred             cCCCEEEecccCCCcccCCeEEEEEEEEECCCCCCCceeEEEEEEEE-EecCCCCCeecCCC
Confidence            7 9999876 4 5778889999999999999885  89999999999 88999999886543

>2a4e_A Cadherin-11; dimer, calcium binding, cell adhesion; 3.20A {Mus musculus}

Probab=99.96  E-value=5.2e-29  Score=227.13  Aligned_cols=138  Identities=19%  Similarity=0.249  Sum_probs=122.0

Q ss_pred             CCcCCCCeEEEEEEEEECCC-CCceEEEEEEEEEeeCCCCCCeeecCcEEEEEECCCCCCcEEEEEEeEeCCC------C
Q psy4697           3 NEDDFLQPITLVVRAIQYDN-QDRYALATLIVSKAGTSLRELQFSKNEYSVSALENLPVNYVLLTVTTNKPRD------L   75 (383)
Q Consensus         3 ~DrE~~~~y~l~V~a~D~g~-~~~~s~~~v~V~V~DvNdn~P~F~~~~y~~~V~En~~~gt~v~~v~A~D~D~------~   75 (383)
                      .|||..+.|.|+|.|+|.|. +++++.+.|.|.|.|+|||+|.|.+..|.++|+||.++|+.|++|.|+|+|.      +
T Consensus        64 LDrE~~~~y~l~v~a~D~~~~~~~~~~~~v~I~V~DvNDn~P~F~~~~y~~~v~E~~~~Gt~v~~v~A~D~D~~~~G~n~  143 (215)
T 2a4e_A           64 LDREERAQYTLMAQAVDRDTNRPLEPPSEFIVKVQDINDNPPEFLHEIYHANVPERSNVGTSVIQVTASDADDPTYGNSA  143 (215)
T ss_dssp             CCTTTCSEEEEEEEEEETTTCCEEEEEEEEEEEEECCCCCCCEESSSSEEEEEETTCCTTCEEEECCEECSSCTTTCSSS
T ss_pred             cCCccCCEEEEEEEEEECCCCCcccccEEEEEEEeeCCCCCCCccCCceEEEEECCCCCCCEEEEEEEEECCCCCCCCce
Confidence            48999999999999999886 5788999999999999999999999999999999999999999999999993      6


Q ss_pred             eeEEEEecCCCCCEEEcC-cccEEEc-ccCCcccCcEEEEEEEEecCC-----ceeEEEEEEEEeecCCCCCc
Q psy4697          76 RVKYWLSNDYGERFSISR-QGDISLM-QCLDYETEDSYRFTVYATDTL-----MTTSATVNISVVNVNDWDPR  141 (383)
Q Consensus        76 ~v~Ysi~~~~~~~F~Id~-tG~I~~~-~~LD~E~~~~y~~~V~A~D~~-----~~s~~tV~I~V~DvNDn~P~  141 (383)
                      .++|+|.+.. .+|.|++ +|.|++. +.||||....|.|.|+|+|+|     ++++++|+|+|.|+|||+|+
T Consensus       144 ~i~Y~i~~~~-~~F~Id~~tG~I~~~~~~LD~E~~~~y~l~V~A~D~g~~~~~~s~~~~v~I~V~DvNDn~P~  215 (215)
T 2a4e_A          144 KLVYSILEGQ-PYFSVEAQTGIIRTALPNMDREAKEEYHVVIQAKDMGGHMGGLSGTTKVTITLTDDYKDDDK  215 (215)
T ss_dssp             CCEEEEEEST-TTEEECTTTCEEEECSSCCCSSSCSEEEEEEEEETTTTCTTCCEEEEEEEEEEEC-------
T ss_pred             EEEEEEeCCC-CcEEEeCCccEEEEcccCCCcccCCEEEEEEEEEECCCCCCCceeEEEEEEEEEECCCCCCC
Confidence            8999998753 5899996 9999999 999999999999999999965     68899999999999999995

>4apx_B Protocadherin-15, otocadherin; cell adhesion, hearing, deafness, CDH23, PCDH15; HET: MES; 1.65A {Mus musculus} PDB: 4aq8_C 4aqa_B* 4aqe_B* 4axw_B*

Probab=99.95  E-value=1.3e-27  Score=221.54  Aligned_cols=186  Identities=16%  Similarity=0.154  Sum_probs=155.0

Q ss_pred             CcEEEEEECCCCCCcEEEEEEeEeCC-C---CeeEEEEecCCCCCEEEcC-cccEEEc---ccCCcccCcEEE---EEEE
Q psy4697          48 NEYSVSALENLPVNYVLLTVTTNKPR-D---LRVKYWLSNDYGERFSISR-QGDISLM---QCLDYETEDSYR---FTVY  116 (383)
Q Consensus        48 ~~y~~~V~En~~~gt~v~~v~A~D~D-~---~~v~Ysi~~~~~~~F~Id~-tG~I~~~---~~LD~E~~~~y~---~~V~  116 (383)
                      +.|.+.|+|+.++|+.|..+.+.|.+ .   +.++|+|.++...+|.|++ +|.+++.   +.||||....|.   +.+.
T Consensus        20 P~~~vsV~E~sp~GTvv~~~~~~~~~d~~~n~~i~ysl~~~~~~~f~id~~tg~~~l~~t~~~LDrE~~~~~~~~~~~v~   99 (242)
T 4apx_B           20 PATIVAIDEESRNGTILVDNMLIKGTAGGPDPTIELSLKDNVDYWVLLDPVKQMLFLNSTGRVLDRDPPMNIHSIVVQVQ   99 (242)
T ss_dssp             SSEEEEEETTCCTTCEEESCCCBSSCBSSSSCSEEEEEESCGGGCEEEETTTTEEEECCTTSCCCCSTTTCCCEEEEEEE
T ss_pred             CeEEEEeeCCCCCCCEEEEEEEecCCCCCCCCEEEEEEecCCCceEEECCCCCEEEEEecCCceeccCCCceEEEEEEEE
Confidence            46789999999999999876554443 2   7899999987777999997 9999874   789999976554   4455


Q ss_pred             EecCC--ceeEEEEEEEEeecCCCCCcccCCceeEEEeccCCCCCCCCceEEE-----EEeeeCCCCC--eEEEEEeCCC
Q psy4697         117 ATDTL--MTTSATVNISVVNVNDWDPRFRYPQYELFLPHIPLADLTPGSVIGK-----VEAADGDKGD--RVTLSLRGPY  187 (383)
Q Consensus       117 A~D~~--~~s~~tV~I~V~DvNDn~P~f~~~~~~~~v~~~~~e~~~~g~~v~~-----v~A~D~D~g~--~i~ysi~~~~  187 (383)
                      |.+++  ..+.+.|.|.|.|+|||+|+|..+.|.+.|+    |+.++|+.|.+     +.|+|+|.|.  .++|+|.++.
T Consensus       100 ~~~~~~~~~~~~~V~I~V~DvNDn~P~F~~~~y~~~v~----En~~~Gt~v~~~~~~~v~A~D~D~g~N~~v~Ysi~~~~  175 (242)
T 4apx_B          100 CVNKKVGTVIYHEVRIVVRDRNDNSPTFKHESYYATVN----ELTPVGTTIFTGFSGDNGATDIDDGPNGQIEYVIQYNP  175 (242)
T ss_dssp             EEETTTCCEEEEEEEEEEECCCCCCCEESSSCEEEEEE----TTCCTTCEEECTTTTTTSEECCSSGGGGCEEEEEECCT
T ss_pred             eECCCCCeEEEEEEEEEEEeCCCCCCcccceeeeeEee----eccCCCCEEEEeeecccccccCCCCcCCceEEEEecCC
Confidence            55543  5667889999999999999999999999999    99999999976     7899999986  6999998432


Q ss_pred             -C----CCEEEc-C-CCcEEEecc-CCCCcceEEEEEEEeeCCCCC---ceeEEEEEEEEe
Q psy4697         188 -E----KMFSIN-D-SGHISIVDL-SALNTSTIQLVVVATDTGNPP---RQASVPAIMHFP  237 (383)
Q Consensus       188 -~----~~F~i~-~-tG~i~l~~~-~~~~~~~y~L~V~a~D~g~p~---~sst~tv~I~v~  237 (383)
                       .    ..|.|+ + +|.|++.+. +++....|.|.|.|+|+|.|+   ++++++|+|+|.
T Consensus       176 ~~~~~~~~F~Id~~~tG~i~~~~~LD~E~~~~y~l~V~A~D~G~~~~~~~~~~~~vtVnVe  236 (242)
T 4apx_B          176 EDPTSNDTFEIPLMLTGNVVLRKRLNYEDKTRYYVIIQANDRAQNLNERRTTTTTLTVDLE  236 (242)
T ss_dssp             TSTTHHHHEECSSTTTCCEEECSCCCTTTCCEEEEEEEEEECCSSGGGCCEEEEEEEEEEE
T ss_pred             CCcccccceEEcCCCceEEEECCcCChhhCCEEEEEEEEEECCcCchhcccCCceEEEEEe
Confidence             2    359998 5 899998764 788899999999999999985   788999999983

>2x2u_A Proto-oncogene tyrosine-protein kinase receptor RET; hirschsprung disease, extracellular domain, disease mutation, transferase, glycoprotein; HET: NAG SO4; 2.00A {Homo sapiens}

Probab=99.95  E-value=1.5e-29  Score=235.46  Aligned_cols=141  Identities=16%  Similarity=0.063  Sum_probs=126.1

Q ss_pred             CCcCCCCeE------------EEEEEEEECCCC--CceEEEEEEEEEeeCCCCCCe----------eecCcEEEEEECCC
Q psy4697           3 NEDDFLQPI------------TLVVRAIQYDNQ--DRYALATLIVSKAGTSLRELQ----------FSKNEYSVSALENL   58 (383)
Q Consensus         3 ~DrE~~~~y------------~l~V~a~D~g~~--~~~s~~~v~V~V~DvNdn~P~----------F~~~~y~~~V~En~   58 (383)
                      .|||..+.|            .|+|.|+|.|.|  +++++++|.|.|.|+|||+|+          |.+..|.+.|+||.
T Consensus        73 LDrE~~~~y~~~~~G~p~~~~~l~V~a~D~g~~~~~~~~~~~v~I~V~DvNDn~P~~~~~~~~~~~F~~~~y~~~v~En~  152 (246)
T 2x2u_A           73 LDHSSWEKLSVRNRGFPLLTVYLKVFLSPTSLREGECQWPGCARVYFSFFNTSFPACSSLKPRELCFPETRPSFRIRENR  152 (246)
T ss_dssp             BCHHHHHHHHHTSTTSCCCEEEEEEECC-------CCCTTTEEEEEEEEESSCCCCGGGCCHHHHHSCSSCCCEEEEBTS
T ss_pred             CChhHhhhhccccCCCcccceEEEEEEEcCCCCCCcccceEEEEEEEEECCCCCCccccccccccccCCCcEEEEEECCC
Confidence            488888889            999999999988  688899999999999999999          99999999999999


Q ss_pred             CCCcEEEEEEeEeCCC---CeeEEEEecCCCCCEEEcC-cccEEEcccCCcccCcEEEEEEEEec--CC--ceeEEEEEE
Q psy4697          59 PVNYVLLTVTTNKPRD---LRVKYWLSNDYGERFSISR-QGDISLMQCLDYETEDSYRFTVYATD--TL--MTTSATVNI  130 (383)
Q Consensus        59 ~~gt~v~~v~A~D~D~---~~v~Ysi~~~~~~~F~Id~-tG~I~~~~~LD~E~~~~y~~~V~A~D--~~--~~s~~tV~I  130 (383)
                      ++|+.|++|.|+|+|.   +.++|+|.+....+|.|++ +|.|++.++||||....|.|+|.|+|  ++  ++++++|.|
T Consensus       153 ~~Gt~v~~v~A~D~D~g~n~~i~Y~i~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~V~A~d~dg~p~~ss~~~v~I  232 (246)
T 2x2u_A          153 PPGTFHQFRLLPVQFLCPQISVAYRLLEGEGLPFRSAPDSLEVSTRWALDREQREKYELVAVCTVHAGAREEVVMVPFPV  232 (246)
T ss_dssp             CCCEEEECSCHHHHHHCTTSCEEEEEESCTTSSEECCTTCCEEEESSCBCTTTCSEEEEEEEEEEC---CCEEEEEEEEE
T ss_pred             CCCcEEEEEEEEcCCCCCCcEEEEEEccCCCCCEEEECCcCEEEeCCccCccccceEEEEEEEEecCCCCcceEEEEEEE
Confidence            9999999999999984   8999999986677999996 99999999999999999999999887  33  789999999


Q ss_pred             EEeecCCCCCccc
Q psy4697         131 SVVNVNDWDPRFR  143 (383)
Q Consensus       131 ~V~DvNDn~P~f~  143 (383)
                      +|+|+|||+|+|.
T Consensus       233 ~V~DvNDn~P~F~  245 (246)
T 2x2u_A          233 TVYDEDDSAPEFE  245 (246)
T ss_dssp             EEECSSCCSCCCC
T ss_pred             EEEEeCCCCCccC
Confidence            9999999999985

>3ubf_A Neural-cadherin; cell adhesion; 2.50A {Drosophila melanogaster} PDB: 3ubg_A

Probab=99.95  E-value=1.8e-27  Score=229.19  Aligned_cols=198  Identities=14%  Similarity=0.157  Sum_probs=164.3

Q ss_pred             CcEEEEEECCCCCCcEEEEEEeEeCCCCeeEEEEecCCCCCEEEcCcccEEEcccCCccc-----CcEEEEEEEEecCC-
Q psy4697          48 NEYSVSALENLPVNYVLLTVTTNKPRDLRVKYWLSNDYGERFSISRQGDISLMQCLDYET-----EDSYRFTVYATDTL-  121 (383)
Q Consensus        48 ~~y~~~V~En~~~gt~v~~v~A~D~D~~~v~Ysi~~~~~~~F~Id~tG~I~~~~~LD~E~-----~~~y~~~V~A~D~~-  121 (383)
                      ..|.++.+|+.+.|+.++++.+.|+   .++|+|.... .+|.|+++|.|++.++||||.     ...|.++|.|.|++ 
T Consensus         7 ~~~~atd~D~g~ng~v~y~l~~~~~---~~~f~i~~~~-~~F~i~~tG~l~~~~~LD~E~~~~~~~~~~~l~v~a~d~~~   82 (316)
T 3ubf_A            7 KRIEFTEADGDTEGKSVFQLEKETD---KETFKIRDDN-PWVTVETNGAVRVKKKWDYEELGPEKTIDFWVIITNMGHNA   82 (316)
T ss_dssp             EEEEEESGGGCSTTCEEEECCCSST---TCEEEESSCC-SSEEECTTSEEEESSCCCGGGSCTTCEEEEEEEEEC-----
T ss_pred             EEEEEEecCCCCCceEEEEEEcCCC---cceEEEeCCC-CeEEECCCeEEEECCccChhhcccccceEEEEEEEEcCCCC
Confidence            3577888888889999988877553   6789987543 589999999999999999998     35788999999975 


Q ss_pred             ---ceeEEEEEEEEeecCCCCCcccCCc--eeEEEeccCCCCCCCCceEEEEEeeeCCCCCeEEEEEe-CCCCCCEEEcC
Q psy4697         122 ---MTTSATVNISVVNVNDWDPRFRYPQ--YELFLPHIPLADLTPGSVIGKVEAADGDKGDRVTLSLR-GPYEKMFSIND  195 (383)
Q Consensus       122 ---~~s~~tV~I~V~DvNDn~P~f~~~~--~~~~v~~~~~e~~~~g~~v~~v~A~D~D~g~~i~ysi~-~~~~~~F~i~~  195 (383)
                         ++++++|.|.|.|+|||+|.|....  |.+.|+    |+.++|+.|+++.|+|+|.|.+++|+|. ++..++|.|++
T Consensus        83 ~~~~s~~~~v~I~V~DvNDn~P~F~~~~~~y~~~v~----En~~~gt~v~~v~A~D~D~g~ni~Y~i~~~~~~~~F~Id~  158 (316)
T 3ubf_A           83 GIKYTDNQRVIILVKDVNDEPPYFINRPLPMQAVVQ----LNAPPNTPVFTLQARDPDTDHNIHYFIVRDRTGGRFEVDE  158 (316)
T ss_dssp             --CCCEEEEEEEEEECTTCCCCEECCSSSSEEEEEC----TTCCTTCEEEECCEECSSTTCCEEEEEEEEESSSCEEECT
T ss_pred             CCcccceEEEEEEEEECCCCCCccCCCCCCEEEEEe----CCCCCCCEEEEEEEECCCCCCceEEEEEeCCCCCEEEEEC
Confidence               5889999999999999999999876  789999    9999999999999999999989999997 55678999997


Q ss_pred             -CCcEEEecc-CCCCcceEEEEEEEeeCCC----CCceeEEEEEEEEeCCcccCcccccCCCCcee
Q psy4697         196 -SGHISIVDL-SALNTSTIQLVVVATDTGN----PPRQASVPAIMHFPEAIVQQASSKLNSGTSST  255 (383)
Q Consensus       196 -tG~i~l~~~-~~~~~~~y~L~V~a~D~g~----p~~sst~tv~I~v~~~~~~~~p~~~~~~~~~~  255 (383)
                       +|.|++.+. +++....|.|.|.|+|+|.    |+++++++|+|.|. + |+++|.|....+...
T Consensus       159 ~tG~i~~~~~lD~e~~~~y~l~V~A~D~g~~~~~~~~~~~~~v~I~V~-d-nDn~P~F~~~~y~~~  222 (316)
T 3ubf_A          159 RSGVVRTRGTDLFQLDMEYVLYVKAEDQNGKVDDRRFQSTPEERLSIV-G-GKRAPQFYMPSYEAE  222 (316)
T ss_dssp             TTCEEEECSSCCCCTTCEEEEEEEEEESCC-------CBCCCEEEEEE-E-SCCCCEESSSSEEEE
T ss_pred             CccEEEECCcCCcccCcEEEEEEEEEeCCCCCCCccccceEEEEEEEE-c-CCCCCEEcCCCceEE
Confidence             999998764 6777889999999999985    57889999999995 4 888998875544433

>3mvs_A Cadherin-23, otocadherin; adhesion, extracellular domain, cell adhesion; 1.10A {Mus musculus} PDB: 4apx_A* 2whv_A 2wcp_A* 4aq8_A 4axw_A* 4aqe_A* 4aqa_A* 2wd0_A* 2wbx_A

Probab=99.95  E-value=1.2e-26  Score=210.80  Aligned_cols=133  Identities=24%  Similarity=0.329  Sum_probs=123.4

Q ss_pred             CCcCCCCeEEEEEEEEECCCCCceEEEEEEEEEeeCCCCCCeeecCcEEEEEECCCCCCcEEEEEEeEeCCC---CeeEE
Q psy4697           3 NEDDFLQPITLVVRAIQYDNQDRYALATLIVSKAGTSLRELQFSKNEYSVSALENLPVNYVLLTVTTNKPRD---LRVKY   79 (383)
Q Consensus         3 ~DrE~~~~y~l~V~a~D~g~~~~~s~~~v~V~V~DvNdn~P~F~~~~y~~~V~En~~~gt~v~~v~A~D~D~---~~v~Y   79 (383)
                      .|||..+.|.|+|.|+|.+.   .++++|.|.|.|+|||+|.|.+..|.+.|+||.++|+.|+++.|+|+|.   +.++|
T Consensus        70 LD~E~~~~y~l~v~a~D~~~---~~~~~v~I~V~DvNDn~P~f~~~~y~~~v~E~~~~gt~v~~v~A~D~D~g~n~~v~Y  146 (210)
T 3mvs_A           70 LDRETKSEFTVEFSVSDHQG---VITRKVNIQVGDVNDNAPTFHNQPYSVRIPENTPVGTPIFIVNATDPDLGAGGSVLY  146 (210)
T ss_dssp             CCTTTCCEEEEEEEEECSSC---EEEEEEEEEEECCCCCCCEECSCSEEEEEETTCCTTCEEEECCEECCSSGGGGCEEE
T ss_pred             cCCcccceEEEEEEEEeCCC---CEEEEEEEEEEeCCCCCCcCCCceEEEEEECCCCCCCEEEEEEEEeCCCCCCceEEE
Confidence            48999999999999999764   3678899999999999999999999999999999999999999999994   78999


Q ss_pred             EEecCCCCCEEEcC-cccEEEcccCCcccCcEEEEEEEEecCC----ceeEEEEEEEEeecCCCC
Q psy4697          80 WLSNDYGERFSISR-QGDISLMQCLDYETEDSYRFTVYATDTL----MTTSATVNISVVNVNDWD  139 (383)
Q Consensus        80 si~~~~~~~F~Id~-tG~I~~~~~LD~E~~~~y~~~V~A~D~~----~~s~~tV~I~V~DvNDn~  139 (383)
                      +|... ..+|.|++ +|.|++.++||||....|.|+|.|+|+|    ++++++|.|+|.|+|||+
T Consensus       147 ~i~~~-~~~F~Id~~tG~i~~~~~LD~E~~~~y~l~V~a~D~g~~~~~s~~~~v~I~V~DvND~~  210 (210)
T 3mvs_A          147 SFQPP-SPFFAIDSARGIVTVIQELDYEVTQAYQLTVNATDQDKTRPLSTLANLAIIITDMQDMD  210 (210)
T ss_dssp             EESSC-CSSEEECTTTCEEEECSCCCTTTCSEEEEEEEEEECCSSSCCEEEEEEEEEEECCCCCC
T ss_pred             EEeCC-CCCEEEeCCcEEEEECCcCCCcccceEEEEEEEEECCCCCCCEEEEEEEEEEEccCCCC
Confidence            99764 46899996 9999999999999999999999999976    689999999999999985

>3ppe_A Vascular endothelial cadherin; extracellular cadherin (EC) domain, beta barrel, IG-domain L domain swapped dimer interface; 2.10A {Gallus gallus}

Probab=99.94  E-value=6.2e-26  Score=205.02  Aligned_cols=131  Identities=20%  Similarity=0.212  Sum_probs=122.4

Q ss_pred             CCcCCCCeEEEEEEEEECCCC-CceEEEEEEEEEeeCCCCCCeeecCcEEEEEECCCCCCcEEEEEEeEeCC------CC
Q psy4697           3 NEDDFLQPITLVVRAIQYDNQ-DRYALATLIVSKAGTSLRELQFSKNEYSVSALENLPVNYVLLTVTTNKPR------DL   75 (383)
Q Consensus         3 ~DrE~~~~y~l~V~a~D~g~~-~~~s~~~v~V~V~DvNdn~P~F~~~~y~~~V~En~~~gt~v~~v~A~D~D------~~   75 (383)
                      .|||..+.|.|+|.|+|.|.| ++++.+.|.|.|.|+|||+|.|.+..|.++|+||.++|+.|++|.|+|+|      ++
T Consensus        61 LDrE~~~~y~l~v~a~D~g~~~~~~~~~~v~I~V~DvNDn~P~F~~~~y~~~v~E~~~~gt~v~~v~A~D~D~~~~g~n~  140 (203)
T 3ppe_A           61 LDREKKAEYELTAHIIDRRNNRSLEPPSKFIIKVSDINDNAPIFVQKIFNGSVPEMSRLGTSVTKVTAEDADDPTVAGHA  140 (203)
T ss_dssp             CCTTTCCEEEEEEEEEETTTTEECSCCEEEEEEEECCCCCCCEESCSEEEEEEETTCCTTCEEEECCEECCSCTTSSSTT
T ss_pred             ccccccceEEEEEEEEECCCCCcccceEEEEEEEcCCCCCCCCccCCccEEEEeccCCCCcEEEEEEEEcCCCcCCCCce
Confidence            489999999999999999887 67888999999999999999999999999999999999999999999999      37


Q ss_pred             eeEEEEecCCCCCEEEcCcccEEEc-ccCCcccCcEEEEEEEEecC-C---ceeEEEEEEEEee
Q psy4697          76 RVKYWLSNDYGERFSISRQGDISLM-QCLDYETEDSYRFTVYATDT-L---MTTSATVNISVVN  134 (383)
Q Consensus        76 ~v~Ysi~~~~~~~F~Id~tG~I~~~-~~LD~E~~~~y~~~V~A~D~-~---~~s~~tV~I~V~D  134 (383)
                      .++|+|.+.. .+|.|+.+|.|++. ++||||....|.|.|.|+|+ |   ++++++|.|+|.|
T Consensus       141 ~i~Y~i~~~~-~~F~I~~tG~i~~~~~~LD~E~~~~y~l~V~A~D~~G~p~~s~t~~v~I~V~D  203 (203)
T 3ppe_A          141 TVTYQIIKGN-EYFTVDDSGVIFTARADLDRESQSAYEIIVKAKDALGLTGESSTATVIIRLTD  203 (203)
T ss_dssp             CEEEEEEEST-TTEEECTTSEEEESCSCCCTTTCSEEEEEEEEEETTCCCCSSSEEEEEEEEEC
T ss_pred             EEEEEEeCCC-CcEEEeCCeEEEECCcCCCcccCCEEEEEEEEEeCCCCCCCeEEEEEEEEEEC
Confidence            8999998754 48999999999999 99999999999999999997 5   7899999999987

>3qrb_A Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus musculus} PDB: 1ff5_A 3lng_A 2qvf_B 1edh_A 3lne_A 1q1p_A 3lni_A 3q2l_A* 3q2n_A* 3lnh_A 3lnf_A 2o72_A 1suh_A

Probab=99.94  E-value=7.5e-26  Score=205.94  Aligned_cols=132  Identities=18%  Similarity=0.286  Sum_probs=122.8

Q ss_pred             CCcCCCCeEEEEEEEEECCCCCceEEEEEEEEEeeCCCCCCeeecCcEEEEEECCCCCCcEEEEEEeEeCCC------Ce
Q psy4697           3 NEDDFLQPITLVVRAIQYDNQDRYALATLIVSKAGTSLRELQFSKNEYSVSALENLPVNYVLLTVTTNKPRD------LR   76 (383)
Q Consensus         3 ~DrE~~~~y~l~V~a~D~g~~~~~s~~~v~V~V~DvNdn~P~F~~~~y~~~V~En~~~gt~v~~v~A~D~D~------~~   76 (383)
                      .|||..+.|.|+|.|+|.|.++++++++|.|.|.|+|||+|.|.+..|.+.|+||.++|+.|++|.|+|+|.      +.
T Consensus        66 LDrE~~~~y~l~v~a~D~~~~~~~~~~~v~I~V~DvNDn~P~F~~~~y~~~v~En~~~gt~v~~v~A~D~D~~~~~~n~~  145 (213)
T 3qrb_A           66 LDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAA  145 (213)
T ss_dssp             CCTTTCSEEEEEEEEEETTSCBCSCCEEEEEEEECCSCCCCEESCSEEEEEEETTCCTTCEEEECCEECCSCTTTSSTTC
T ss_pred             cCcccCceEEEEEEEEeCCCCcccceEEEEEEEEEccCCCCccCCCceEEEEECCCCCCcEEEEEEEEeCCCCCCCcCcE
Confidence            489999999999999999999999999999999999999999999999999999999999999999999984      58


Q ss_pred             eEEEEecC-----CCCCEEEcC-cccEEEc-ccCCcccCcEEEEEEEEecCC---ceeEEEEEEEEee
Q psy4697          77 VKYWLSND-----YGERFSISR-QGDISLM-QCLDYETEDSYRFTVYATDTL---MTTSATVNISVVN  134 (383)
Q Consensus        77 v~Ysi~~~-----~~~~F~Id~-tG~I~~~-~~LD~E~~~~y~~~V~A~D~~---~~s~~tV~I~V~D  134 (383)
                      ++|+|...     ...+|.|++ +|.|++. +.||||....|.|.|.|+|+|   ++++++|.|+|.|
T Consensus       146 i~Y~i~~~~~~~~~~~~F~Id~~tG~i~~~~~~LD~E~~~~y~l~V~A~D~g~~~~s~t~~v~I~V~D  213 (213)
T 3qrb_A          146 IAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKD  213 (213)
T ss_dssp             CEEEEEEEESCCSCSCSEEECTTTCEEEECSSCCCTTTCCEEEEEEEEETGGGTSCEEEEEEEEEEEC
T ss_pred             EEEEEccCCCCCCcCCeEEEECCCcEEEEccCCCCCccCceEEEEEEEEeCCCCCceEEEEEEEEEEC
Confidence            99999762     456899996 9999997 899999999999999999954   8999999999987

>3k5r_A Cadherin 13; mouse, structural protein; 2.00A {Mus musculus} PDB: 3k5s_A

Probab=99.94  E-value=8.3e-26  Score=206.37  Aligned_cols=132  Identities=20%  Similarity=0.262  Sum_probs=122.5

Q ss_pred             CCcCCCCeEEEEEEEEECCCCCceEEEEEEEEEeeCCCCCCeeecCcEEEEEECCCCCCcEEEEEEeEeCCC-----Cee
Q psy4697           3 NEDDFLQPITLVVRAIQYDNQDRYALATLIVSKAGTSLRELQFSKNEYSVSALENLPVNYVLLTVTTNKPRD-----LRV   77 (383)
Q Consensus         3 ~DrE~~~~y~l~V~a~D~g~~~~~s~~~v~V~V~DvNdn~P~F~~~~y~~~V~En~~~gt~v~~v~A~D~D~-----~~v   77 (383)
                      .|||..+.|.|+|.|+|.|.|+++++++|.|.|.|+|||+|.|.+..|.+.|+||.++|+.|++|.|+|+|.     +.+
T Consensus        66 LDrE~~~~y~l~v~a~D~g~~~~~~~~~v~I~V~DvNDn~P~F~~~~y~~~v~E~~~~gt~v~~v~A~D~D~~~g~n~~i  145 (218)
T 3k5r_A           66 LDRETIATYQLYVETTDASGKTLEGPVPLEVIVIDQNDNRPIFREGPYIGHVMEGSPTGTTVMRMTAFDADDPATDNALL  145 (218)
T ss_dssp             CCTTTCSEEEEEEEEECSSSCEEEEEEEEEEEEECTTCCCCCCCSCSEEEEEETTCCTTCEEEECCCSCSSSSCGGGGCE
T ss_pred             CCcccCCEEEEEEEEEECCCCceeeeEEEEEEEEeCCCCCCcccCCceEEEEECCCCCCCEEEEEEEEeCCCCCCCCcEE
Confidence            489999999999999999999999999999999999999999999999999999999999999999999995     789


Q ss_pred             EEEEecCC-----CCCEEEcC-cccEEEc---ccCCccc--CcEEEEEEEEecCC-----ceeEEEEEEEEee
Q psy4697          78 KYWLSNDY-----GERFSISR-QGDISLM---QCLDYET--EDSYRFTVYATDTL-----MTTSATVNISVVN  134 (383)
Q Consensus        78 ~Ysi~~~~-----~~~F~Id~-tG~I~~~---~~LD~E~--~~~y~~~V~A~D~~-----~~s~~tV~I~V~D  134 (383)
                      +|+|.+..     .++|.|++ +|.|++.   +.||||.  ...|.|.|.|+|+|     ++++++|+|+|.|
T Consensus       146 ~Y~i~~~~~~~~~~~~F~Id~~tG~i~~~~~~~~LD~E~~~~~~y~l~V~a~D~gg~~p~~sst~~v~I~V~D  218 (218)
T 3k5r_A          146 RYNIRQQTPDKPSPNMFYIDPEKGDIVTVVSPALLDRETLENPKYELIIEAQDMAGLDVGLTGTATATIVIDD  218 (218)
T ss_dssp             EEEEEEEESCCSCSCSEEECTTTCEEEECSCGGGCCGGGCSCSEEEEEEEEEECSSTTTTCEEEEEEEEEEEC
T ss_pred             EEEEecCCCCCCcCCEEEEECCccEEEEeccCCCCCccccCCCeEEEEEEEEECCCCCCCeeEEEEEEEEEEC
Confidence            99998732     26899996 9999987   7999999  77999999999965     7899999999987

>2qvi_A Cadherin-2; beta barrel, strand SWAP, domain SWAP, calcium, cell adhesion, cleavage on PAIR of basic residues, glycoprotein, membrane; 3.01A {Mus musculus} SCOP: b.1.6.1 b.1.6.1 PDB: 1ncj_A

Probab=99.93  E-value=9.1e-26  Score=205.70  Aligned_cols=132  Identities=20%  Similarity=0.276  Sum_probs=122.9

Q ss_pred             CCcCCCCeEEEEEEEEECCCCCceEEEEEEEEEeeCCCCCCeeecCcEEEEEECCCCCCcEEEEEEeEeCCC-----Cee
Q psy4697           3 NEDDFLQPITLVVRAIQYDNQDRYALATLIVSKAGTSLRELQFSKNEYSVSALENLPVNYVLLTVTTNKPRD-----LRV   77 (383)
Q Consensus         3 ~DrE~~~~y~l~V~a~D~g~~~~~s~~~v~V~V~DvNdn~P~F~~~~y~~~V~En~~~gt~v~~v~A~D~D~-----~~v   77 (383)
                      .|||..+.|.|+|.|+|.|.|++++++.|.|.|.|+|||+|.|.+..|.++|+||.++|+.|++|.|+|+|.     +.+
T Consensus        66 LDrE~~~~y~l~v~a~D~g~~~~~~~~~v~I~V~DvNDn~P~F~~~~y~~~v~En~~~gt~v~~v~A~D~D~~~g~n~~i  145 (215)
T 2qvi_A           66 LDRELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNGML  145 (215)
T ss_dssp             CCTTTCSEEEEEEEEEETTTCCCEEEEEEEEEEECCCCCCCBCSSSEEEEEECSSCCTTCEEEECCCBCSSCTTSTTTCC
T ss_pred             cCcccCCeEEEEEEEEECCCCceeeeEEEEEEEeECCCCCCcccCceeEEEEeCCCCCCCEEEEEEEEeCCCCCCCCcEE
Confidence            489999999999999999999999999999999999999999999999999999999999999999999994     789


Q ss_pred             EEEEecC-----CCCCEEEcC-cccEEEc-ccCCcccCcEEEEEEEEecCC------ceeEEEEEEEEee
Q psy4697          78 KYWLSND-----YGERFSISR-QGDISLM-QCLDYETEDSYRFTVYATDTL------MTTSATVNISVVN  134 (383)
Q Consensus        78 ~Ysi~~~-----~~~~F~Id~-tG~I~~~-~~LD~E~~~~y~~~V~A~D~~------~~s~~tV~I~V~D  134 (383)
                      +|+|.+.     ...+|.|++ +|.|++. ++||||....|.|.|.|+|+|      ++++++|.|+|+|
T Consensus       146 ~Y~i~~~~~~~~~~~~F~Id~~tG~i~~~~~~LD~E~~~~y~l~V~a~D~g~~p~~~ls~t~~v~I~V~D  215 (215)
T 2qvi_A          146 RYRILSQAPSTPSPNMFTINNETGDIITVAAGLDREKVQQYTLIIQATDMEGNPTYGLSNTATAVITVTD  215 (215)
T ss_dssp             CCEEEECSSCCSSTTCEEECTTTCEEEECSCCCCTTTCSEEEEEEECCTTTTCTTTSCCCEEEEEEEECC
T ss_pred             EEEEecCCCCCCcCCeEEEcCCCcEEEEecCCCCcccCCeEEEEEEEEECCCCCCCCcceEEEEEEEEEC
Confidence            9999874     357899997 9999995 899999999999999999963      6889999999987

>2yst_A Protocadherin-7; BH-PCDH, beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.93  E-value=1.1e-26  Score=192.22  Aligned_cols=108  Identities=23%  Similarity=0.273  Sum_probs=100.8

Q ss_pred             EEEeeCCCCCCeeecCcEEEEEECCCCCCcEEEEEEeEeCCC---CeeEEEEecCC---CCCEEEcC-cccEEEcccCCc
Q psy4697          33 VSKAGTSLRELQFSKNEYSVSALENLPVNYVLLTVTTNKPRD---LRVKYWLSNDY---GERFSISR-QGDISLMQCLDY  105 (383)
Q Consensus        33 V~V~DvNdn~P~F~~~~y~~~V~En~~~gt~v~~v~A~D~D~---~~v~Ysi~~~~---~~~F~Id~-tG~I~~~~~LD~  105 (383)
                      ++|.|+|||+|+|.+..|.++|+||.++|+.|++|.|+|+|.   +.++|+|.+..   ..+|.|++ +|.|++.++|||
T Consensus         2 ~~V~DvNDn~P~F~~~~y~~~v~En~~~Gt~v~~v~A~D~D~g~n~~i~Y~i~~~~~~~~~~F~Id~~tG~I~~~~~LD~   81 (119)
T 2yst_A            2 SSGSSGNDNSPRFEKSVYEADLAENSAPGTPILQLRAADLDVGVNGQIEYVFGAATESVRRLLRLDETSGWLSVLHRIDR   81 (119)
T ss_dssp             CCCCCSCCCCCCCSSSEEEEEEETTCCTTCEEEECCCCCSSSSCCSCCCCEECSCCTTHHHHEEECTTTCEEEECSCCCT
T ss_pred             CeEecCCCCCCCcCCCcEEEEEECCCCCCCEEEEEEEEeCCCCCCCeEEEEEecCCCccccEEEEeCCceEEEECccCCc
Confidence            468999999999999999999999999999999999999995   78999998753   35899996 999999999999


Q ss_pred             ccCcEEEEEEEEecCC---ceeEEEEEEEEeecCCCCC
Q psy4697         106 ETEDSYRFTVYATDTL---MTTSATVNISVVNVNDWDP  140 (383)
Q Consensus       106 E~~~~y~~~V~A~D~~---~~s~~tV~I~V~DvNDn~P  140 (383)
                      |....|.|.|.|+|+|   ++++++|.|+|.|+|||+|
T Consensus        82 E~~~~y~l~V~A~D~g~p~~s~~~~v~I~V~DvNDn~P  119 (119)
T 2yst_A           82 EEVNQLRFTVMARDRGQPPKTDKATVVLNIKDENDNVP  119 (119)
T ss_dssp             TTCSEEEEEEEECCSBTTBCCEEEEEEEEEECSTTCCC
T ss_pred             ccCCEEEEEEEEEECCCCCcEEEEEEEEEEEeccCCCC
Confidence            9999999999999976   6789999999999999998

>3lnd_A CDH6 protein, cadherin 6; cell adhesion, cell membrane, membrane, transmembr; 2.82A {Mus musculus}

Probab=99.92  E-value=3.5e-25  Score=200.61  Aligned_cols=131  Identities=21%  Similarity=0.270  Sum_probs=115.2

Q ss_pred             CCcCCCCeEEEEEEEEECC-CCCceEEEEEEEEEeeCCCCCCeeecCcEEEEEECCCCCCcEEEEEEeEeCCC------C
Q psy4697           3 NEDDFLQPITLVVRAIQYD-NQDRYALATLIVSKAGTSLRELQFSKNEYSVSALENLPVNYVLLTVTTNKPRD------L   75 (383)
Q Consensus         3 ~DrE~~~~y~l~V~a~D~g-~~~~~s~~~v~V~V~DvNdn~P~F~~~~y~~~V~En~~~gt~v~~v~A~D~D~------~   75 (383)
                      .|||..+.|.|+|.|+|.| .+++++.+.|.|.|.|+|||+|.|.+..|.+.|+||.++|+.|++|.|+|+|.      +
T Consensus        63 LDrE~~~~y~l~v~a~D~~~~~~~~~~~~v~I~V~DvNDn~P~F~~~~y~~~v~E~~~~gt~v~~v~A~D~D~~~~g~n~  142 (207)
T 3lnd_A           63 LDREEKPVYILRAQAVNRRTGRPVEPESEFIIKIHDINDNEPIFTKDVYTATVPEMADVGTFVVQVTATDADDPTYGNSA  142 (207)
T ss_dssp             CCGGGCCEEEC----CBSSSCCCCSCCCCCEEEEECCSCCCCEESCSEEEEEEESSCCTTCEEEECCEECSSCTTSSSTT
T ss_pred             cCcccCCEEEEEEEEEECCCCCccccEEEEEEEECccCCCCCccCCCceEEEEeCCCCCCCEEEEEEEEeCCCCCCCCCc
Confidence            4899999999999999988 47788999999999999999999999999999999999999999999999993      5


Q ss_pred             eeEEEEecCCCCCEEEcC-cccEEEc-ccCCcccCcEEEEEEEEecC-----CceeEEEEEEEEee
Q psy4697          76 RVKYWLSNDYGERFSISR-QGDISLM-QCLDYETEDSYRFTVYATDT-----LMTTSATVNISVVN  134 (383)
Q Consensus        76 ~v~Ysi~~~~~~~F~Id~-tG~I~~~-~~LD~E~~~~y~~~V~A~D~-----~~~s~~tV~I~V~D  134 (383)
                      .++|+|.+.. .+|.|++ +|.|++. +.||||....|.|.|.|+|+     +++++++|.|+|.|
T Consensus       143 ~i~Y~i~~~~-~~F~Id~~tG~i~~~~~~lD~E~~~~y~l~V~A~D~g~~~~~~s~t~~v~I~V~D  207 (207)
T 3lnd_A          143 KVVYSILQGQ-PYFSVESETGIIKTALLNMDRENREQYQVVIQAKDMGGQMGGLSGTTTVNITLTD  207 (207)
T ss_dssp             CCEEEEEESG-GGEEECTTTCEEEECCSSCCC--CCEEEEEEEEESGGGCTTCBEEEEEEEEEEEC
T ss_pred             EEEEEEcCCC-CCEEEcCCCcEEEECcccCCcccCCEEEEEEEEEECCCCCCCcEeEEEEEEEEeC
Confidence            8999998743 4899996 9999999 99999999999999999996     37899999999987

>2ee0_A Protocadherin-9; Ca domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.90  E-value=1.8e-24  Score=177.56  Aligned_cols=104  Identities=24%  Similarity=0.321  Sum_probs=96.2

Q ss_pred             EEEeeCCCCCCeeecCcEEEEEECCCCCCcEEEEEEeEeCCC---CeeEEEEec----CCCCCEEEcC-cccEEEcccCC
Q psy4697          33 VSKAGTSLRELQFSKNEYSVSALENLPVNYVLLTVTTNKPRD---LRVKYWLSN----DYGERFSISR-QGDISLMQCLD  104 (383)
Q Consensus        33 V~V~DvNdn~P~F~~~~y~~~V~En~~~gt~v~~v~A~D~D~---~~v~Ysi~~----~~~~~F~Id~-tG~I~~~~~LD  104 (383)
                      |.|.|+|||+|+|.+..|.++|+||.++|+.|++|.|+|+|.   +.++|+|.+    +...+|.|++ +|.|++.++||
T Consensus         2 ~~V~DvNDn~P~F~~~~y~~~v~En~~~Gt~v~~v~A~D~D~g~n~~i~Y~i~~~~~~~~~~~F~Id~~tG~I~~~~~LD   81 (114)
T 2ee0_A            2 SSGSSGNDNRPVFKEGQVEVHIPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQVAPATKRLFALNNTTGLITVQRSLD   81 (114)
T ss_dssp             CCCCCCCCCCCCCSCSEEEEEEETTCCTTCEEEECCCCSCSSCCCSCCEEEECSSCCHHHHHHEEECTTTCEEEECSCCC
T ss_pred             CeEeeCCCCCCCcCCCcEEEEEECCCCCCCEEEEEEEEeCCCCCCcEEEEEEccCCCCCccceEEEeCCeeEEEECccCC
Confidence            468999999999999999999999999999999999999995   789999976    2456899997 99999999999


Q ss_pred             cccCcEEEEEEEEecCC-ceeEEEEEEEEeecC
Q psy4697         105 YETEDSYRFTVYATDTL-MTTSATVNISVVNVN  136 (383)
Q Consensus       105 ~E~~~~y~~~V~A~D~~-~~s~~tV~I~V~DvN  136 (383)
                      ||..+.|.|.|+|+|+| ..++++|.|+|+|+|
T Consensus        82 ~E~~~~y~l~V~A~D~g~~~~~~~v~I~V~DvN  114 (114)
T 2ee0_A           82 REETAIHKVTVLASDGSSTPARATVTINVTDVN  114 (114)
T ss_dssp             TTTCSEEEEEEEEESSSSSCEEEEEEEEEECCC
T ss_pred             cccCcEEEEEEEEEECCCCceEEEEEEEEEECC
Confidence            99999999999999976 568899999999998

>4apx_B Protocadherin-15, otocadherin; cell adhesion, hearing, deafness, CDH23, PCDH15; HET: MES; 1.65A {Mus musculus} PDB: 4aq8_C 4aqa_B* 4aqe_B* 4axw_B*

Probab=99.88  E-value=7.1e-22  Score=182.96  Aligned_cols=132  Identities=20%  Similarity=0.268  Sum_probs=111.5

Q ss_pred             CCcCCCCeEEEEEEEEECCC--CCceEEEEEEEEEeeCCCCCCeeecCcEEEEEECCCCCCcEEEE-----EEeEeCCC-
Q psy4697           3 NEDDFLQPITLVVRAIQYDN--QDRYALATLIVSKAGTSLRELQFSKNEYSVSALENLPVNYVLLT-----VTTNKPRD-   74 (383)
Q Consensus         3 ~DrE~~~~y~l~V~a~D~g~--~~~~s~~~v~V~V~DvNdn~P~F~~~~y~~~V~En~~~gt~v~~-----v~A~D~D~-   74 (383)
                      .|||....|.+.+.+.+.+.  .+..+.+.|+|.|.|+|||+|+|.+..|.++|+||.++|+.|++     |.|+|+|. 
T Consensus        83 LDrE~~~~~~~~~~~v~~~~~~~~~~~~~~V~I~V~DvNDn~P~F~~~~y~~~v~En~~~Gt~v~~~~~~~v~A~D~D~g  162 (242)
T 4apx_B           83 LDRDPPMNIHSIVVQVQCVNKKVGTVIYHEVRIVVRDRNDNSPTFKHESYYATVNELTPVGTTIFTGFSGDNGATDIDDG  162 (242)
T ss_dssp             CCCSTTTCCCEEEEEEEEEETTTCCEEEEEEEEEEECCCCCCCEESSSCEEEEEETTCCTTCEEECTTTTTTSEECCSSG
T ss_pred             eeccCCCceEEEEEEEEeECCCCCeEEEEEEEEEEEeCCCCCCcccceeeeeEeeeccCCCCEEEEeeecccccccCCCC
Confidence            58998877766655555332  35567788999999999999999999999999999999999976     77999996 


Q ss_pred             --CeeEEEEecCCC-----CCEEEc-C-cccEEEcccCCcccCcEEEEEEEEecCC------ceeEEEEEEEEee
Q psy4697          75 --LRVKYWLSNDYG-----ERFSIS-R-QGDISLMQCLDYETEDSYRFTVYATDTL------MTTSATVNISVVN  134 (383)
Q Consensus        75 --~~v~Ysi~~~~~-----~~F~Id-~-tG~I~~~~~LD~E~~~~y~~~V~A~D~~------~~s~~tV~I~V~D  134 (383)
                        +.|+|+|.....     ..|.|+ + +|.|++.+.||||....|.|.|+|+|+|      +++.++|+|+|+-
T Consensus       163 ~N~~v~Ysi~~~~~~~~~~~~F~Id~~~tG~i~~~~~LD~E~~~~y~l~V~A~D~G~~~~~~~~~~~~vtVnVe~  237 (242)
T 4apx_B          163 PNGQIEYVIQYNPEDPTSNDTFEIPLMLTGNVVLRKRLNYEDKTRYYVIIQANDRAQNLNERRTTTTTLTVDLEH  237 (242)
T ss_dssp             GGGCEEEEEECCTTSTTHHHHEECSSTTTCCEEECSCCCTTTCCEEEEEEEEEECCSSGGGCCEEEEEEEEEEEC
T ss_pred             cCCceEEEEecCCCCcccccceEEcCCCceEEEECCcCChhhCCEEEEEEEEEECCcCchhcccCCceEEEEEee
Confidence              789999986432     369998 5 8999999999999999999999999976      5677888888764

>2yst_A Protocadherin-7; BH-PCDH, beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.84  E-value=3.2e-21  Score=159.27  Aligned_cols=111  Identities=23%  Similarity=0.432  Sum_probs=99.3

Q ss_pred             EEEeecCCCCCcccCCceeEEEeccCCCCCCCCceEEEEEeeeCCCCC--eEEEEEeCCC---CCCEEEcC-CCcEEEec
Q psy4697         130 ISVVNVNDWDPRFRYPQYELFLPHIPLADLTPGSVIGKVEAADGDKGD--RVTLSLRGPY---EKMFSIND-SGHISIVD  203 (383)
Q Consensus       130 I~V~DvNDn~P~f~~~~~~~~v~~~~~e~~~~g~~v~~v~A~D~D~g~--~i~ysi~~~~---~~~F~i~~-tG~i~l~~  203 (383)
                      ++|.|+|||+|+|..+.|.+.|+    |+.++|+.|+++.|+|+|.|.  .++|+|.+..   ..+|.|++ +|.|++.+
T Consensus         2 ~~V~DvNDn~P~F~~~~y~~~v~----En~~~Gt~v~~v~A~D~D~g~n~~i~Y~i~~~~~~~~~~F~Id~~tG~I~~~~   77 (119)
T 2yst_A            2 SSGSSGNDNSPRFEKSVYEADLA----ENSAPGTPILQLRAADLDVGVNGQIEYVFGAATESVRRLLRLDETSGWLSVLH   77 (119)
T ss_dssp             CCCCCSCCCCCCCSSSEEEEEEE----TTCCTTCEEEECCCCCSSSSCCSCCCCEECSCCTTHHHHEEECTTTCEEEECS
T ss_pred             CeEecCCCCCCCcCCCcEEEEEE----CCCCCCCEEEEEEEEeCCCCCCCeEEEEEecCCCccccEEEEeCCceEEEECc
Confidence            46899999999999999999999    999999999999999999985  6999998543   35899997 99999876


Q ss_pred             -cCCCCcceEEEEEEEeeCCCCCceeEEEEEEEEeCCcccCcc
Q psy4697         204 -LSALNTSTIQLVVVATDTGNPPRQASVPAIMHFPEAIVQQAS  245 (383)
Q Consensus       204 -~~~~~~~~y~L~V~a~D~g~p~~sst~tv~I~v~~~~~~~~p  245 (383)
                       ++++....|.|.|.|+|+|.|+++++++|+|.| .+.|+++|
T Consensus        78 ~LD~E~~~~y~l~V~A~D~g~p~~s~~~~v~I~V-~DvNDn~P  119 (119)
T 2yst_A           78 RIDREEVNQLRFTVMARDRGQPPKTDKATVVLNI-KDENDNVP  119 (119)
T ss_dssp             CCCTTTCSEEEEEEEECCSBTTBCCEEEEEEEEE-ECSTTCCC
T ss_pred             cCCcccCCEEEEEEEEEECCCCCcEEEEEEEEEE-EeccCCCC
Confidence             478888999999999999999999999999999 67777665

>2yqg_A Desmoglein-2, HDGC; cadherin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.83  E-value=3.3e-21  Score=160.15  Aligned_cols=107  Identities=19%  Similarity=0.302  Sum_probs=97.2

Q ss_pred             CCCCCCeeecCcEEEEEECCCCCCcEEEEEEeEeCCC---CeeEEEEecC-----CCCCEEEcC-cccEEEcccCCcccC
Q psy4697          38 TSLRELQFSKNEYSVSALENLPVNYVLLTVTTNKPRD---LRVKYWLSND-----YGERFSISR-QGDISLMQCLDYETE  108 (383)
Q Consensus        38 vNdn~P~F~~~~y~~~V~En~~~gt~v~~v~A~D~D~---~~v~Ysi~~~-----~~~~F~Id~-tG~I~~~~~LD~E~~  108 (383)
                      .+.+.|.|..+.|.+.+.||.++|+.|++|. +|+|.   +.++|+|.+.     ...+|.|++ +|.|++.++||||..
T Consensus         5 ~~r~~p~f~~~~~~v~e~e~~~~gt~v~~v~-~D~D~g~n~~i~Y~i~~~~~~~~~~~~F~Id~~tG~i~~~~~LDrE~~   83 (123)
T 2yqg_A            5 SSGQKRAWITAPVALREGEDLSKKNPIAKIH-SDLAEERGLKITYKYTGKGITEPPFGIFVFNKDTGELNVTSILDREET   83 (123)
T ss_dssp             SSCSCCSSCCCCEEEESSSCCCSSCCCBCCC-CHHHHHHTCCCEEEEEEBTTTBSSCSSEEEETTTTEEEECSCCBTTTB
T ss_pred             ccccCCccCCCCEEEEecCCCCCCCEEEEEE-ECCCCCCCceEEEEEecCCCCCCcCCCEEEeCCcCEEEECcccCcccC
Confidence            4678999999999999999999999999999 58884   7999999863     457899997 999999999999999


Q ss_pred             cEEEEEEEEecCC---ceeEEEEEEEEeecCCCCCcccCC
Q psy4697         109 DSYRFTVYATDTL---MTTSATVNISVVNVNDWDPRFRYP  145 (383)
Q Consensus       109 ~~y~~~V~A~D~~---~~s~~tV~I~V~DvNDn~P~f~~~  145 (383)
                      ..|.|+|.|+|+|   ++++++|.|+|+|+|||+|+|.++
T Consensus        84 ~~y~l~V~A~D~g~p~~~~~~~v~I~V~DvNDn~P~F~~~  123 (123)
T 2yqg_A           84 PFFLLTGYALDARGNNVEKPLELRIKVLDINDNEPVFTQD  123 (123)
T ss_dssp             SEEEEEEEEECTTCCEEEEEECCEEEEECTTCCCCCCCCC
T ss_pred             ceEEEEEEEEECCCCceEEEEEEEEEEEEcCCCCCEeCCC
Confidence            9999999999976   688899999999999999999753

>2ee0_A Protocadherin-9; Ca domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.80  E-value=7.7e-20  Score=149.85  Aligned_cols=102  Identities=24%  Similarity=0.409  Sum_probs=90.6

Q ss_pred             EEEeecCCCCCcccCCceeEEEeccCCCCCCCCceEEEEEeeeCCCCC--eEEEEEeC----CCCCCEEEcC-CCcEEEe
Q psy4697         130 ISVVNVNDWDPRFRYPQYELFLPHIPLADLTPGSVIGKVEAADGDKGD--RVTLSLRG----PYEKMFSIND-SGHISIV  202 (383)
Q Consensus       130 I~V~DvNDn~P~f~~~~~~~~v~~~~~e~~~~g~~v~~v~A~D~D~g~--~i~ysi~~----~~~~~F~i~~-tG~i~l~  202 (383)
                      |.|.|+|||+|.|..+.|.+.|+    |+.++|+.|+++.|+|+|.|.  .++|+|.+    +...+|.|++ +|.|++.
T Consensus         2 ~~V~DvNDn~P~F~~~~y~~~v~----En~~~Gt~v~~v~A~D~D~g~n~~i~Y~i~~~~~~~~~~~F~Id~~tG~I~~~   77 (114)
T 2ee0_A            2 SSGSSGNDNRPVFKEGQVEVHIP----ENAPVGTSVIQLHATDADIGSNAEIRYIFGAQVAPATKRLFALNNTTGLITVQ   77 (114)
T ss_dssp             CCCCCCCCCCCCCSCSEEEEEEE----TTCCTTCEEEECCCCSCSSCCCSCCEEEECSSCCHHHHHHEEECTTTCEEEEC
T ss_pred             CeEeeCCCCCCCcCCCcEEEEEE----CCCCCCCEEEEEEEEeCCCCCCcEEEEEEccCCCCCccceEEEeCCeeEEEEC
Confidence            46899999999999999999999    999999999999999999985  69999974    2346899997 9999987


Q ss_pred             c-cCCCCcceEEEEEEEeeCCCCCceeEEEEEEEEe
Q psy4697         203 D-LSALNTSTIQLVVVATDTGNPPRQASVPAIMHFP  237 (383)
Q Consensus       203 ~-~~~~~~~~y~L~V~a~D~g~p~~sst~tv~I~v~  237 (383)
                      + ++++....|.|.|.|+|+|.|+  ++++|+|.|.
T Consensus        78 ~~LD~E~~~~y~l~V~A~D~g~~~--~~~~v~I~V~  111 (114)
T 2ee0_A           78 RSLDREETAIHKVTVLASDGSSTP--ARATVTINVT  111 (114)
T ss_dssp             SCCCTTTCSEEEEEEEEESSSSSC--EEEEEEEEEE
T ss_pred             ccCCcccCcEEEEEEEEEECCCCc--eEEEEEEEEE
Confidence            6 4788889999999999999987  7788888883

>1ncg_A N-cadherin; cell adhesion protein; 2.10A {Mus musculus} SCOP: b.1.6.1 PDB: 1nch_A 1nci_A

Probab=99.79  E-value=2.2e-19  Score=146.20  Aligned_cols=93  Identities=22%  Similarity=0.324  Sum_probs=72.8

Q ss_pred             cEEEEEECCCCCCc--EEEEEEeEeCC-CCeeEEEEec-----CCCCCEEEcC-cccEEEcccCCcccCcEEEEEEEEec
Q psy4697          49 EYSVSALENLPVNY--VLLTVTTNKPR-DLRVKYWLSN-----DYGERFSISR-QGDISLMQCLDYETEDSYRFTVYATD  119 (383)
Q Consensus        49 ~y~~~V~En~~~gt--~v~~v~A~D~D-~~~v~Ysi~~-----~~~~~F~Id~-tG~I~~~~~LD~E~~~~y~~~V~A~D  119 (383)
                      .|.++|+||.++|+  .|+++ +.|.+ ++.++|+|.+     +..++|.|++ +|.|++.++||||....|.|+|.|+|
T Consensus         6 ~~~~~v~En~~~gt~~~v~~v-d~D~g~n~~i~Y~i~~~~~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~V~A~D   84 (110)
T 1ncg_A            6 IPPINLPENSRGPFPQELVRI-RSGRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLDRELIARFHLRAHAVD   84 (110)
T ss_dssp             CCCEEECSSCCCCSSEEEEEC-CCGGGGGSCCEEEEESBTTTBSSTTSEEECTTTCEEEECSCCCTTTCCEEEEEEEEEC
T ss_pred             eeeEEEeCCCCCCCcEEEEEE-eCCCCCCCEEEEEEeCCCCCCCcCCEEEEECCCCEEEECCcCCcccCCeEEEEEEEEE
Confidence            46899999999999  46666 34444 3899999986     3467899996 99999999999999999999999999


Q ss_pred             CC---ceeEEEEEEEEeecCCCCCcc
Q psy4697         120 TL---MTTSATVNISVVNVNDWDPRF  142 (383)
Q Consensus       120 ~~---~~s~~tV~I~V~DvNDn~P~f  142 (383)
                      +|   ++++++|.|+|+|+|||+|+|
T Consensus        85 ~g~p~~~~~~~v~I~V~DvNDn~P~F  110 (110)
T 1ncg_A           85 INGNQVENPIDIVINVIDMNDNRPEF  110 (110)
T ss_dssp             TTSCBCSCCEEEEEEEC---------
T ss_pred             CCCCceeeEEEEEEEEEECCCCCCCC
Confidence            76   688999999999999999987

>1wyj_A Protocadherin beta 14; SS bond, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Mus musculus}

Probab=99.78  E-value=3.4e-20  Score=154.38  Aligned_cols=103  Identities=14%  Similarity=0.082  Sum_probs=90.1

Q ss_pred             cCcEEEEEECCCCCCcEEEEEEeEeCCC--Cee---EEEEec-CCCCCEEEcC-cccEEEcccCCcccC----cEEEEEE
Q psy4697          47 KNEYSVSALENLPVNYVLLTVTTNKPRD--LRV---KYWLSN-DYGERFSISR-QGDISLMQCLDYETE----DSYRFTV  115 (383)
Q Consensus        47 ~~~y~~~V~En~~~gt~v~~v~A~D~D~--~~v---~Ysi~~-~~~~~F~Id~-tG~I~~~~~LD~E~~----~~y~~~V  115 (383)
                      ...|.++|+||.++|+.|++| |+|+|.  +.+   +|+|.+ +...+|.||+ +|.|++.++||||..    ..|.+.|
T Consensus        10 ~~~~~~~V~E~~~~Gt~V~~v-a~D~d~~~~~i~~~~Y~i~~~~~~~~F~Id~~tG~i~~~~~LDRE~~c~~~~~y~l~v   88 (125)
T 1wyj_A           10 SATITYSVLEETDRGSLVGNL-AKDLGLSLRELITRGAQILSKGNKQLLQLEQKSGNLLLKEKLDREELCGSTNPCILHF   88 (125)
T ss_dssp             CCCCCEEECSSCCTTCEEEES-TTTTTCCHHHHHHTTCEEECSSSSCSEEECSSSSEEEESSCCCSTTTCTTCSSCCBCC
T ss_pred             CceEEEEEECCCCCCCEEEEE-EecCCCCCCceeeEEEEEecCCCCCeEEEECCccEEEECccccchhhcccCCcEEEEE
Confidence            356778999999999999999 999986  345   899976 5567999997 999999999999998    9999999


Q ss_pred             EEecCCceeEEEEEEEEeecCCCCCcccCCceeEE
Q psy4697         116 YATDTLMTTSATVNISVVNVNDWDPRFRYPQYELF  150 (383)
Q Consensus       116 ~A~D~~~~s~~tV~I~V~DvNDn~P~f~~~~~~~~  150 (383)
                      +|.++.....++|.|.|+|+|||+|+|..+.|.++
T Consensus        89 ~a~~~~p~~~~~V~I~V~DvNDN~P~F~~~~y~vs  123 (125)
T 1wyj_A           89 QVLLKSPVQFIQGEIQLQDVNDHAPEFMEDESGPS  123 (125)
T ss_dssp             EEEETTTTEEECCCEEECCCCCCCCCCCCCCCCCC
T ss_pred             EEEECCCCeEEEEEEEEEEccCCCCcCCCcEEEEe
Confidence            99986655688999999999999999999887653

>3k6d_A T-cadherin; cell adhesion; 1.80A {Xenopus laevis} PDB: 2v37_A

Probab=99.67  E-value=2.4e-16  Score=125.62  Aligned_cols=84  Identities=25%  Similarity=0.296  Sum_probs=76.3

Q ss_pred             EEEEEECCCCC--CcEEEEEEeEeCCCCeeEEEEec-----CCCCCEEEcC-cccEEEcccCCcccCcEEEEEEEEecCC
Q psy4697          50 YSVSALENLPV--NYVLLTVTTNKPRDLRVKYWLSN-----DYGERFSISR-QGDISLMQCLDYETEDSYRFTVYATDTL  121 (383)
Q Consensus        50 y~~~V~En~~~--gt~v~~v~A~D~D~~~v~Ysi~~-----~~~~~F~Id~-tG~I~~~~~LD~E~~~~y~~~V~A~D~~  121 (383)
                      +.++|+||.++  |+.|++|+|+|+|. .++|+|.+     +..++|.||+ +|.|++.++||||....|.|+|.|+|+|
T Consensus         5 ~~~~V~En~~~~~g~~v~~v~A~D~D~-~i~Ysi~~~~~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~V~A~D~g   83 (99)
T 3k6d_A            5 PSISIPENQRIPFPKIVGRVVVSDRIP-GSKIKLYGKGVDQEPKGIFKINENSGEVSVTKALDREAIPSYQLQVETTDEN   83 (99)
T ss_dssp             CCEEEETTCCSCSSEEEEECBCSSCCT-TCEEEEESBTTTBSSTTSEEECTTTCEEEECSCCCTTTCCEEEEEEEEECTT
T ss_pred             CcEEEeCCCCCCCCcEEEEEEEECCCC-cEEEEEecCcCCCCCCCEEEEECCceEEEECcCCCcccCceEEEEEEEEECC
Confidence            36899999999  99999999999997 99999975     3357899997 9999999999999999999999999986


Q ss_pred             ---ceeEEEEEEEEee
Q psy4697         122 ---MTTSATVNISVVN  134 (383)
Q Consensus       122 ---~~s~~tV~I~V~D  134 (383)
                         +++.++|.|+|+|
T Consensus        84 ~~~l~~~~~v~I~V~D   99 (99)
T 3k6d_A           84 GKTIEGPVDLEILVID   99 (99)
T ss_dssp             CCEEEEEEEEEEEEEC
T ss_pred             CCceeeEEEEEEEEEC
Confidence               6778999999987

>3k6f_A T-cadherin; cell adhesion, calcium, cell membrane, cleavage on PAIR of basic residues, glycoprotein, GPI-anchor, lipoprotein, membrane; 1.81A {Mus musculus}

Probab=99.66  E-value=6.9e-16  Score=123.24  Aligned_cols=83  Identities=23%  Similarity=0.318  Sum_probs=75.6

Q ss_pred             EEEEECCCCC--CcEEEEEEeEeCCCCeeEEEEec-----CCCCCEEEcC-cccEEEcccCCcccCcEEEEEEEEecCC-
Q psy4697          51 SVSALENLPV--NYVLLTVTTNKPRDLRVKYWLSN-----DYGERFSISR-QGDISLMQCLDYETEDSYRFTVYATDTL-  121 (383)
Q Consensus        51 ~~~V~En~~~--gt~v~~v~A~D~D~~~v~Ysi~~-----~~~~~F~Id~-tG~I~~~~~LD~E~~~~y~~~V~A~D~~-  121 (383)
                      .++|+||.++  |+.|++|.|+|+|. .++|+|.+     +..++|.||+ +|.|++.++||||....|.|+|+|+|+| 
T Consensus         7 ~~~V~EN~~~~~g~~v~~V~A~D~D~-~i~Ysi~~~~~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~V~A~D~g~   85 (100)
T 3k6f_A            7 PILIPENQRQPFPRDVGKVVDSDRPE-GSKFRLTGKGVDQDPKGTFRINENTGSVSVTRTLDRETIATYQLYVETTDASG   85 (100)
T ss_dssp             CEEEETTCCSSSCEEEEECEETTCCT-TCEEEEEEBTTTBSSTTSEEECTTTCEEEECSCCCTTTCSEEEEEEEEECTTC
T ss_pred             cEEEeCCCCCCCCcEEEEEEEEcCCC-CEEEEEeCCCCCCCcCCEEEEECCCCEEEECcccCCcCCCEEEEEEEEEECCC
Confidence            5799999998  89999999999998 89999975     2357899996 9999999999999999999999999987 


Q ss_pred             --ceeEEEEEEEEee
Q psy4697         122 --MTTSATVNISVVN  134 (383)
Q Consensus       122 --~~s~~tV~I~V~D  134 (383)
                        +++.++|.|+|+|
T Consensus        86 p~l~~~~~v~I~V~D  100 (100)
T 3k6f_A           86 KTLEGPVPLEVIVID  100 (100)
T ss_dssp             CEEEEEEEEEEEEEC
T ss_pred             CcccceEEEEEEEEC
Confidence              6788999999987

>3k6i_A T-cadherin; cell adhesion, alternative splicing, calcium, cell membrane, cleavage on PAIR of basic residues, glycoprotein, GPI-anchor, lipoprotein; 1.13A {Gallus gallus}

Probab=99.65  E-value=8.6e-16  Score=122.45  Aligned_cols=83  Identities=25%  Similarity=0.319  Sum_probs=75.4

Q ss_pred             EEEEECCCCCC--cEEEEEEeEeCCCCeeEEEEecC-----CCCCEEEcC-cccEEEcccCCcccCcEEEEEEEEecCC-
Q psy4697          51 SVSALENLPVN--YVLLTVTTNKPRDLRVKYWLSND-----YGERFSISR-QGDISLMQCLDYETEDSYRFTVYATDTL-  121 (383)
Q Consensus        51 ~~~V~En~~~g--t~v~~v~A~D~D~~~v~Ysi~~~-----~~~~F~Id~-tG~I~~~~~LD~E~~~~y~~~V~A~D~~-  121 (383)
                      .++|+||.++|  +.|++|.|+|+|. .++|+|.+.     ..+.|.||+ +|.|++.++||||....|.|+|+|+|+| 
T Consensus         6 ~~~v~EN~~~g~~~~v~~V~A~D~D~-~i~Ysi~~~~~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~v~A~D~g~   84 (99)
T 3k6i_A            6 PILIPENQRPPFPRSVGKVIRSEGTE-GAKFRLSGKGVDQDPKGIFRINEISGDVSVTRPLDREAIANYELEVEVTDLSG   84 (99)
T ss_dssp             CEEEETTCCSSSCEEEEECEETTCCS-SEEEEEESBTTTBSSTTSEEECTTTCEEEECSCCCTTTCCEEEEEEEEEETTS
T ss_pred             cEEEeCCCCCCCCeEEEEEEEEcCCC-eEEEEEeCCCCCCCcCCEEEEECCCcEEEECcccCCccCCEEEEEEEEEECCC
Confidence            47899999997  8999999999998 999999852     346899997 9999999999999999999999999987 


Q ss_pred             --ceeEEEEEEEEee
Q psy4697         122 --MTTSATVNISVVN  134 (383)
Q Consensus       122 --~~s~~tV~I~V~D  134 (383)
                        +++.++|.|.|+|
T Consensus        85 ~~l~~~~~v~I~V~D   99 (99)
T 3k6i_A           85 KIIDGPVRLDISVID   99 (99)
T ss_dssp             CEEEEEEEEEEEEEC
T ss_pred             CceeeeEEEEEEEEC
Confidence              6788999999987

>2omz_B Epithelial-cadherin; leucine-rich-repeat, nvasion protein, IG-like domain, adhesi protein, cell invasion-cell adhesion complex; 1.60A {Homo sapiens} SCOP: b.1.6.1 PDB: 2omt_B 2omu_B 2omv_B 1o6s_B 2omy_B 2omx_B 3ff8_A 3ff7_A 2omw_B

Probab=99.62  E-value=1.2e-15  Score=123.00  Aligned_cols=85  Identities=22%  Similarity=0.264  Sum_probs=74.7

Q ss_pred             EEEEECCCC--CCcEEEEEEeEeCCCCeeEEEEecCC-----CCCEEEcC-cccEEEcccCCcccCcEEEEEEEEecCC-
Q psy4697          51 SVSALENLP--VNYVLLTVTTNKPRDLRVKYWLSNDY-----GERFSISR-QGDISLMQCLDYETEDSYRFTVYATDTL-  121 (383)
Q Consensus        51 ~~~V~En~~--~gt~v~~v~A~D~D~~~v~Ysi~~~~-----~~~F~Id~-tG~I~~~~~LD~E~~~~y~~~V~A~D~~-  121 (383)
                      .++|+||.+  .|..|++|.|.|..++.++|+|.+..     .++|.||+ +|.|++.++||||....|.|+|+|+|+| 
T Consensus        10 ~~~V~En~~~~~~~~v~~v~Ad~g~N~~i~Ysi~~~~~~~~~~~~F~Id~~tG~I~~~~~LDrE~~~~y~l~V~A~D~g~   89 (105)
T 2omz_B           10 PISCPENEKGPFPKNLVQIKSNKDKEGKVFYSITGQGADTPPVGVFIIERETGWLKVTEPLDRERIATYTLFSHAVSSNG   89 (105)
T ss_dssp             CCCEESSCCSSSSEEEEECEEGGGGSSCCEEEEEEBTTTBSSTTSEEECTTTCEEEECSCCCTTTCCEEEEEEEEECTTS
T ss_pred             CEEEeCCCCCCCCcEEEEEECCCCCCCeEEEEEeCCCCCCCccCEEEEeCCCCEEEECccCCcCCCCeEEEEEEEEECCC
Confidence            478999998  57899999996655699999998732     45899997 9999999999999999999999999976 


Q ss_pred             --ceeEEEEEEEEeec
Q psy4697         122 --MTTSATVNISVVNV  135 (383)
Q Consensus       122 --~~s~~tV~I~V~Dv  135 (383)
                        ++++++|.|.|+|+
T Consensus        90 p~~~~~~~v~I~V~Dv  105 (105)
T 2omz_B           90 NAVEDPMEILITVTDQ  105 (105)
T ss_dssp             CBSSCCEEEEEEEEC-
T ss_pred             CceeeEEEEEEEEEeC
Confidence              67889999999996

>1zvn_A Mn-cadherin; strand dimer, ----; 2.16A {Gallus gallus}

Probab=99.61  E-value=2.5e-15  Score=119.70  Aligned_cols=84  Identities=26%  Similarity=0.320  Sum_probs=75.1

Q ss_pred             EEEEEECCCC--CCcEEEEEEeEeCC--CCeeEEEEecCC-CCCEEEcC-cccEEEcccCCcccCcEEEEEEEEecCC--
Q psy4697          50 YSVSALENLP--VNYVLLTVTTNKPR--DLRVKYWLSNDY-GERFSISR-QGDISLMQCLDYETEDSYRFTVYATDTL--  121 (383)
Q Consensus        50 y~~~V~En~~--~gt~v~~v~A~D~D--~~~v~Ysi~~~~-~~~F~Id~-tG~I~~~~~LD~E~~~~y~~~V~A~D~~--  121 (383)
                      +.++|+||.+  +|+.|++|+ +|+|  +++++|+|.+.. .++|.||+ +|.|++.++||||+...|.|+|+|+|+|  
T Consensus         6 ~~~~v~En~~~~~g~~v~~v~-~D~D~gNg~v~Ysi~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~V~A~D~G~~   84 (99)
T 1zvn_A            6 NQFFVLEEYTGTDPLYVGKLH-SDMDRGDGSIKYILSGEGAGIVFTIDDTTGDIHAIQRLDREERSQYTLRAQALDRRTG   84 (99)
T ss_dssp             CEEEEEGGGCSSSCEEEEECC-BTTCCSSSCEEEEEEETTBTTTEEECTTTCEEEECSCCCTTTCSEEEEEEEEEETTTC
T ss_pred             cEEEEECCCCCCCCcEEEEEE-ECCCCCCCEEEEEEeCCCCCceEEEeCCCCCEEECeecCCccCCeEEEEEEEEECCCC
Confidence            5789999976  689999999 9999  489999998743 36899997 9999999999999999999999999975  


Q ss_pred             --ceeEEEEEEEEee
Q psy4697         122 --MTTSATVNISVVN  134 (383)
Q Consensus       122 --~~s~~tV~I~V~D  134 (383)
                        ++++++|.|+|+|
T Consensus        85 p~l~~~~~v~I~V~D   99 (99)
T 1zvn_A           85 RPMEPESEFIIKIQD   99 (99)
T ss_dssp             CBSSCCEEEEEEEEC
T ss_pred             CCcceeEEEEEEEeC
Confidence              5788999999987

>1zxk_A Cadherin-8; strand dimer, cell adhesion; 2.00A {Mus musculus} PDB: 2a4c_A

Probab=99.59  E-value=4.1e-15  Score=118.25  Aligned_cols=84  Identities=26%  Similarity=0.361  Sum_probs=74.5

Q ss_pred             EEEEEECCCC--CCcEEEEEEeEeCCC--CeeEEEEecC-CCCCEEEcC-cccEEEcccCCcccCcEEEEEEEEecCC--
Q psy4697          50 YSVSALENLP--VNYVLLTVTTNKPRD--LRVKYWLSND-YGERFSISR-QGDISLMQCLDYETEDSYRFTVYATDTL--  121 (383)
Q Consensus        50 y~~~V~En~~--~gt~v~~v~A~D~D~--~~v~Ysi~~~-~~~~F~Id~-tG~I~~~~~LD~E~~~~y~~~V~A~D~~--  121 (383)
                      +.++|+||.+  +|+.|+++. +|+|.  ++++|+|.++ ...+|.||+ +|.|++.++||||..+.|.|+|+|+|+|  
T Consensus         5 ~~~~v~En~~~p~~~~v~~v~-~D~D~gN~~v~Ysi~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~v~A~D~g~~   83 (98)
T 1zxk_A            5 NQMFVLEEFSGPEPILVGRLH-TDLDPGSKKIKYILSGDGAGTIFQINDITGDIHAIKRLDREEKAEYTLTAQAVDFETN   83 (98)
T ss_dssp             CEEEECGGGCSSSCEEEEECC-BCCCCC--CEEEEEEETTBTTTEEECTTTCEEEECSCCCTTTCSEEEEEEEEEETTTC
T ss_pred             ceEEEECCCCCCCCeEEEEEE-ECCCCCCCEEEEEEeCCCCCCEEEEECCccEEEECccCCCcCCCeEEEEEEEEECCCC
Confidence            5789999995  899999997 99995  7999999875 345899997 9999999999999999999999999975  


Q ss_pred             --ceeEEEEEEEEee
Q psy4697         122 --MTTSATVNISVVN  134 (383)
Q Consensus       122 --~~s~~tV~I~V~D  134 (383)
                        ++++++|.|.|+|
T Consensus        84 ~~l~~~~~v~I~V~D   98 (98)
T 1zxk_A           84 KPLEPPSEFIIKVQD   98 (98)
T ss_dssp             CBSSCCEEEEEEECC
T ss_pred             CCcceeEEEEEEEEC
Confidence              5788999999987

>2yqg_A Desmoglein-2, HDGC; cadherin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.56  E-value=2.2e-15  Score=124.85  Aligned_cols=108  Identities=16%  Similarity=0.150  Sum_probs=96.1

Q ss_pred             cCCCCCcccCCceeEEEeccCCCCCCCCceEEEEEeeeCCCCC--eEEEEEeCC-----CCCCEEEcC-CCcEEEec-cC
Q psy4697         135 VNDWDPRFRYPQYELFLPHIPLADLTPGSVIGKVEAADGDKGD--RVTLSLRGP-----YEKMFSIND-SGHISIVD-LS  205 (383)
Q Consensus       135 vNDn~P~f~~~~~~~~v~~~~~e~~~~g~~v~~v~A~D~D~g~--~i~ysi~~~-----~~~~F~i~~-tG~i~l~~-~~  205 (383)
                      .+.++|.|..+.|.+.+.    |++++|+.|++|. +|+|.|.  .++|+|.+.     ....|.|++ +|.|++.+ ++
T Consensus         5 ~~r~~p~f~~~~~~v~e~----e~~~~gt~v~~v~-~D~D~g~n~~i~Y~i~~~~~~~~~~~~F~Id~~tG~i~~~~~LD   79 (123)
T 2yqg_A            5 SSGQKRAWITAPVALREG----EDLSKKNPIAKIH-SDLAEERGLKITYKYTGKGITEPPFGIFVFNKDTGELNVTSILD   79 (123)
T ss_dssp             SSCSCCSSCCCCEEEESS----SCCCSSCCCBCCC-CHHHHHHTCCCEEEEEEBTTTBSSCSSEEEETTTTEEEECSCCB
T ss_pred             ccccCCccCCCCEEEEec----CCCCCCCEEEEEE-ECCCCCCCceEEEEEecCCCCCCcCCCEEEeCCcCEEEECcccC
Confidence            468999999999988888    8899999999999 6999875  799999842     457899998 99999876 47


Q ss_pred             CCCcceEEEEEEEeeCCCCCceeEEEEEEEEeCCcccCccccc
Q psy4697         206 ALNTSTIQLVVVATDTGNPPRQASVPAIMHFPEAIVQQASSKL  248 (383)
Q Consensus       206 ~~~~~~y~L~V~a~D~g~p~~sst~tv~I~v~~~~~~~~p~~~  248 (383)
                      ++....|.|.|.|+|+|.|+++++++|.|.| .+.|+++|.|.
T Consensus        80 rE~~~~y~l~V~A~D~g~p~~~~~~~v~I~V-~DvNDn~P~F~  121 (123)
T 2yqg_A           80 REETPFFLLTGYALDARGNNVEKPLELRIKV-LDINDNEPVFT  121 (123)
T ss_dssp             TTTBSEEEEEEEEECTTCCEEEEEECCEEEE-ECTTCCCCCCC
T ss_pred             cccCceEEEEEEEEECCCCceEEEEEEEEEE-EEcCCCCCEeC
Confidence            8889999999999999999999999999999 88999999885

>1wuz_A Pcdha4 protein, CNR-EC1; cadherin, heteronuclear protocadherin, cell adhesion; NMR {Mus musculus}

Probab=99.49  E-value=8.6e-15  Score=117.46  Aligned_cols=88  Identities=15%  Similarity=0.158  Sum_probs=74.4

Q ss_pred             CcEEEEEECCCCCCcEEEEEEeEeCCC-----CeeEEEEec-CCCCCEEEcC-cccEEEcccCCcccCc------EEEEE
Q psy4697          48 NEYSVSALENLPVNYVLLTVTTNKPRD-----LRVKYWLSN-DYGERFSISR-QGDISLMQCLDYETED------SYRFT  114 (383)
Q Consensus        48 ~~y~~~V~En~~~gt~v~~v~A~D~D~-----~~v~Ysi~~-~~~~~F~Id~-tG~I~~~~~LD~E~~~------~y~~~  114 (383)
                      ..|.++|+|+.++|+.|++| |.|+|.     +.++|+|.+ +...+|.||+ +|.|++.++||||...      .|.+.
T Consensus         3 ~~~~~~V~E~~~~Gt~Vg~v-a~D~~~~~~~~~~~~y~i~~~~~~~~F~Id~~tG~i~~~~~LDRE~~~~~~~~~~~~~~   81 (103)
T 1wuz_A            3 SQIHYSIPEEAKHGTFVGRI-AQDLGLELTELVPRLFRVASKDRGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLE   81 (103)
T ss_dssp             CEEEEEEESSCCTTCBCCCH-HHHHTCCHHHHTTTTBCCBCSSCSCSEEEETTTTEEEECSCCSHHHHCSSSSSCEEEEE
T ss_pred             eeEEEEEECCCCCCCEEEEE-EeccCCCCcccccEEEEEEeCCCccEEEEECCeEEEEECCcCccccccCCCCcEEEEEE
Confidence            45788999999999999999 999885     368999976 4567999996 9999999999999852      67777


Q ss_pred             EEEecCCceeEEEEEEEEeecCCC
Q psy4697         115 VYATDTLMTTSATVNISVVNVNDW  138 (383)
Q Consensus       115 V~A~D~~~~s~~tV~I~V~DvNDn  138 (383)
                      |.|.+. + ..++|.|.|+|+|||
T Consensus        82 v~~~~p-~-~~~~v~I~V~DiNDN  103 (103)
T 1wuz_A           82 VIVDRP-L-QVFHVEVEVRDINDN  103 (103)
T ss_dssp             EEETTT-T-EEEEEEEEEECCSCC
T ss_pred             EEECCC-C-EEEEEEEEEEEcCCC
Confidence            777543 3 488999999999998

>3k6d_A T-cadherin; cell adhesion; 1.80A {Xenopus laevis} PDB: 2v37_A

Probab=99.42  E-value=8.4e-13  Score=104.99  Aligned_cols=84  Identities=23%  Similarity=0.327  Sum_probs=75.3

Q ss_pred             eEEEeccCCCCCCC--CceEEEEEeeeCCCCCeEEEEEeC-----CCCCCEEEcC-CCcEEEec-cCCCCcceEEEEEEE
Q psy4697         148 ELFLPHIPLADLTP--GSVIGKVEAADGDKGDRVTLSLRG-----PYEKMFSIND-SGHISIVD-LSALNTSTIQLVVVA  218 (383)
Q Consensus       148 ~~~v~~~~~e~~~~--g~~v~~v~A~D~D~g~~i~ysi~~-----~~~~~F~i~~-tG~i~l~~-~~~~~~~~y~L~V~a  218 (383)
                      .+.|+    |+.++  |+.|++|.|+|+|.  .++|+|.+     +..+.|.|++ +|.|++.+ ++++....|.|.|.|
T Consensus         6 ~~~V~----En~~~~~g~~v~~v~A~D~D~--~i~Ysi~~~~~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~V~A   79 (99)
T 3k6d_A            6 SISIP----ENQRIPFPKIVGRVVVSDRIP--GSKIKLYGKGVDQEPKGIFKINENSGEVSVTKALDREAIPSYQLQVET   79 (99)
T ss_dssp             CEEEE----TTCCSCSSEEEEECBCSSCCT--TCEEEEESBTTTBSSTTSEEECTTTCEEEECSCCCTTTCCEEEEEEEE
T ss_pred             cEEEe----CCCCCCCCcEEEEEEEECCCC--cEEEEEecCcCCCCCCCEEEEECCceEEEECcCCCcccCceEEEEEEE
Confidence            57888    99999  99999999999997  89999974     2357899998 99999876 488889999999999


Q ss_pred             eeCCCCCceeEEEEEEEEe
Q psy4697         219 TDTGNPPRQASVPAIMHFP  237 (383)
Q Consensus       219 ~D~g~p~~sst~tv~I~v~  237 (383)
                      +|+|.|+++++++|.|.|.
T Consensus        80 ~D~g~~~l~~~~~v~I~V~   98 (99)
T 3k6d_A           80 TDENGKTIEGPVDLEILVI   98 (99)
T ss_dssp             ECTTCCEEEEEEEEEEEEE
T ss_pred             EECCCCceeeEEEEEEEEE
Confidence            9999999999999999984

>1ncg_A N-cadherin; cell adhesion protein; 2.10A {Mus musculus} SCOP: b.1.6.1 PDB: 1nch_A 1nci_A

Probab=99.42  E-value=6.1e-13  Score=107.89  Aligned_cols=94  Identities=16%  Similarity=0.220  Sum_probs=71.5

Q ss_pred             ceeEEEeccCCCCCCCCce--EEEEEeeeCCCC--CeEEEEEeC-----CCCCCEEEcC-CCcEEEec-cCCCCcceEEE
Q psy4697         146 QYELFLPHIPLADLTPGSV--IGKVEAADGDKG--DRVTLSLRG-----PYEKMFSIND-SGHISIVD-LSALNTSTIQL  214 (383)
Q Consensus       146 ~~~~~v~~~~~e~~~~g~~--v~~v~A~D~D~g--~~i~ysi~~-----~~~~~F~i~~-tG~i~l~~-~~~~~~~~y~L  214 (383)
                      .|.++|+    |+.++|+.  |+++   |.|.|  ..++|+|.+     +..+.|.|++ +|.|++.+ ++++....|.|
T Consensus         6 ~~~~~v~----En~~~gt~~~v~~v---d~D~g~n~~i~Y~i~~~~~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l   78 (110)
T 1ncg_A            6 IPPINLP----ENSRGPFPQELVRI---RSGRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLDRELIARFHL   78 (110)
T ss_dssp             CCCEEEC----SSCCCCSSEEEEEC---CCGGGGGSCCEEEEESBTTTBSSTTSEEECTTTCEEEECSCCCTTTCCEEEE
T ss_pred             eeeEEEe----CCCCCCCcEEEEEE---eCCCCCCCEEEEEEeCCCCCCCcCCEEEEECCCCEEEECCcCCcccCCeEEE
Confidence            3578899    99999995  5555   55554  479999984     3457999997 99999876 47888899999


Q ss_pred             EEEEeeCCCCCceeEEEEEEEEeCCcccCcccc
Q psy4697         215 VVVATDTGNPPRQASVPAIMHFPEAIVQQASSK  247 (383)
Q Consensus       215 ~V~a~D~g~p~~sst~tv~I~v~~~~~~~~p~~  247 (383)
                      .|.|+|+|.|+++++++|.|.| .+.|+++|.|
T Consensus        79 ~V~A~D~g~p~~~~~~~v~I~V-~DvNDn~P~F  110 (110)
T 1ncg_A           79 RAHAVDINGNQVENPIDIVINV-IDMNDNRPEF  110 (110)
T ss_dssp             EEEEECTTSCBCSCCEEEEEEE-C---------
T ss_pred             EEEEEECCCCceeeEEEEEEEE-EECCCCCCCC
Confidence            9999999999999999999999 8899998865

>3k6f_A T-cadherin; cell adhesion, calcium, cell membrane, cleavage on PAIR of basic residues, glycoprotein, GPI-anchor, lipoprotein, membrane; 1.81A {Mus musculus}

Probab=99.40  E-value=1.8e-12  Score=103.24  Aligned_cols=84  Identities=25%  Similarity=0.370  Sum_probs=74.4

Q ss_pred             eEEEeccCCCCCCC--CceEEEEEeeeCCCCCeEEEEEeC-----CCCCCEEEcC-CCcEEEec-cCCCCcceEEEEEEE
Q psy4697         148 ELFLPHIPLADLTP--GSVIGKVEAADGDKGDRVTLSLRG-----PYEKMFSIND-SGHISIVD-LSALNTSTIQLVVVA  218 (383)
Q Consensus       148 ~~~v~~~~~e~~~~--g~~v~~v~A~D~D~g~~i~ysi~~-----~~~~~F~i~~-tG~i~l~~-~~~~~~~~y~L~V~a  218 (383)
                      .+.|+    |+.+.  |+.|++|.|+|+|.  .++|+|.+     +..+.|.|++ +|.|++.+ ++++....|.|.|.|
T Consensus         7 ~~~V~----EN~~~~~g~~v~~V~A~D~D~--~i~Ysi~~~~~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~V~A   80 (100)
T 3k6f_A            7 PILIP----ENQRQPFPRDVGKVVDSDRPE--GSKFRLTGKGVDQDPKGTFRINENTGSVSVTRTLDRETIATYQLYVET   80 (100)
T ss_dssp             CEEEE----TTCCSSSCEEEEECEETTCCT--TCEEEEEEBTTTBSSTTSEEECTTTCEEEECSCCCTTTCSEEEEEEEE
T ss_pred             cEEEe----CCCCCCCCcEEEEEEEEcCCC--CEEEEEeCCCCCCCcCCEEEEECCCCEEEECcccCCcCCCEEEEEEEE
Confidence            46788    89988  89999999999998  79999973     2347899998 99999876 488889999999999


Q ss_pred             eeCCCCCceeEEEEEEEEe
Q psy4697         219 TDTGNPPRQASVPAIMHFP  237 (383)
Q Consensus       219 ~D~g~p~~sst~tv~I~v~  237 (383)
                      +|+|.|+++++++|.|.|.
T Consensus        81 ~D~g~p~l~~~~~v~I~V~   99 (100)
T 3k6f_A           81 TDASGKTLEGPVPLEVIVI   99 (100)
T ss_dssp             ECTTCCEEEEEEEEEEEEE
T ss_pred             EECCCCcccceEEEEEEEE
Confidence            9999999999999999984

>3k6i_A T-cadherin; cell adhesion, alternative splicing, calcium, cell membrane, cleavage on PAIR of basic residues, glycoprotein, GPI-anchor, lipoprotein; 1.13A {Gallus gallus}

Probab=99.39  E-value=3.1e-12  Score=101.71  Aligned_cols=84  Identities=24%  Similarity=0.383  Sum_probs=74.2

Q ss_pred             eEEEeccCCCCCCCC--ceEEEEEeeeCCCCCeEEEEEeCC-----CCCCEEEcC-CCcEEEec-cCCCCcceEEEEEEE
Q psy4697         148 ELFLPHIPLADLTPG--SVIGKVEAADGDKGDRVTLSLRGP-----YEKMFSIND-SGHISIVD-LSALNTSTIQLVVVA  218 (383)
Q Consensus       148 ~~~v~~~~~e~~~~g--~~v~~v~A~D~D~g~~i~ysi~~~-----~~~~F~i~~-tG~i~l~~-~~~~~~~~y~L~V~a  218 (383)
                      .+.|+    |+.+.|  ..|++|.|+|+|.  .++|+|.+.     ..+.|.|++ +|.|++.+ ++++....|.|.|.|
T Consensus         6 ~~~v~----EN~~~g~~~~v~~V~A~D~D~--~i~Ysi~~~~~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~v~A   79 (99)
T 3k6i_A            6 PILIP----ENQRPPFPRSVGKVIRSEGTE--GAKFRLSGKGVDQDPKGIFRINEISGDVSVTRPLDREAIANYELEVEV   79 (99)
T ss_dssp             CEEEE----TTCCSSSCEEEEECEETTCCS--SEEEEEESBTTTBSSTTSEEECTTTCEEEECSCCCTTTCCEEEEEEEE
T ss_pred             cEEEe----CCCCCCCCeEEEEEEEEcCCC--eEEEEEeCCCCCCCcCCEEEEECCCcEEEECcccCCccCCEEEEEEEE
Confidence            36788    899886  8899999999998  899999742     346899998 99999876 488889999999999


Q ss_pred             eeCCCCCceeEEEEEEEEe
Q psy4697         219 TDTGNPPRQASVPAIMHFP  237 (383)
Q Consensus       219 ~D~g~p~~sst~tv~I~v~  237 (383)
                      +|+|.|+++++++|.|.|.
T Consensus        80 ~D~g~~~l~~~~~v~I~V~   98 (99)
T 3k6i_A           80 TDLSGKIIDGPVRLDISVI   98 (99)
T ss_dssp             EETTSCEEEEEEEEEEEEE
T ss_pred             EECCCCceeeeEEEEEEEE
Confidence            9999999999999999984

>1zvn_A Mn-cadherin; strand dimer, ----; 2.16A {Gallus gallus}

Probab=99.38  E-value=2.2e-12  Score=102.55  Aligned_cols=86  Identities=26%  Similarity=0.417  Sum_probs=74.0

Q ss_pred             eeEEEeccCCCCCC--CCceEEEEEeeeCCCCC-eEEEEEeCC-CCCCEEEcC-CCcEEEec-cCCCCcceEEEEEEEee
Q psy4697         147 YELFLPHIPLADLT--PGSVIGKVEAADGDKGD-RVTLSLRGP-YEKMFSIND-SGHISIVD-LSALNTSTIQLVVVATD  220 (383)
Q Consensus       147 ~~~~v~~~~~e~~~--~g~~v~~v~A~D~D~g~-~i~ysi~~~-~~~~F~i~~-tG~i~l~~-~~~~~~~~y~L~V~a~D  220 (383)
                      +.+.|+    |+.+  .|+.|++|. +|+|.|. .++|+|.+. ..+.|.|++ +|.|++.+ ++++....|.|.|.|+|
T Consensus         6 ~~~~v~----En~~~~~g~~v~~v~-~D~D~gNg~v~Ysi~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~V~A~D   80 (99)
T 1zvn_A            6 NQFFVL----EEYTGTDPLYVGKLH-SDMDRGDGSIKYILSGEGAGIVFTIDDTTGDIHAIQRLDREERSQYTLRAQALD   80 (99)
T ss_dssp             CEEEEE----GGGCSSSCEEEEECC-BTTCCSSSCEEEEEEETTBTTTEEECTTTCEEEECSCCCTTTCSEEEEEEEEEE
T ss_pred             cEEEEE----CCCCCCCCcEEEEEE-ECCCCCCCEEEEEEeCCCCCceEEEeCCCCCEEECeecCCccCCeEEEEEEEEE
Confidence            367788    8865  688999999 9999983 699999854 336899998 99999876 48888999999999999


Q ss_pred             CC-CCCceeEEEEEEEEe
Q psy4697         221 TG-NPPRQASVPAIMHFP  237 (383)
Q Consensus       221 ~g-~p~~sst~tv~I~v~  237 (383)
                      +| .|+++++++|.|.|.
T Consensus        81 ~G~~p~l~~~~~v~I~V~   98 (99)
T 1zvn_A           81 RRTGRPMEPESEFIIKIQ   98 (99)
T ss_dssp             TTTCCBSSCCEEEEEEEE
T ss_pred             CCCCCCcceeEEEEEEEe
Confidence            99 599999999999984

>1zxk_A Cadherin-8; strand dimer, cell adhesion; 2.00A {Mus musculus} PDB: 2a4c_A

Probab=99.37  E-value=2.8e-12  Score=101.72  Aligned_cols=86  Identities=22%  Similarity=0.422  Sum_probs=73.6

Q ss_pred             eeEEEeccCCCCCC--CCceEEEEEeeeCCCCC-eEEEEEeCC-CCCCEEEcC-CCcEEEec-cCCCCcceEEEEEEEee
Q psy4697         147 YELFLPHIPLADLT--PGSVIGKVEAADGDKGD-RVTLSLRGP-YEKMFSIND-SGHISIVD-LSALNTSTIQLVVVATD  220 (383)
Q Consensus       147 ~~~~v~~~~~e~~~--~g~~v~~v~A~D~D~g~-~i~ysi~~~-~~~~F~i~~-tG~i~l~~-~~~~~~~~y~L~V~a~D  220 (383)
                      +.++|+    |+.+  .|+.|+++. +|+|.|. .++|+|.++ ..+.|.|++ +|.|++.+ ++++....|.|.|.|+|
T Consensus         5 ~~~~v~----En~~~p~~~~v~~v~-~D~D~gN~~v~Ysi~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~v~A~D   79 (98)
T 1zxk_A            5 NQMFVL----EEFSGPEPILVGRLH-TDLDPGSKKIKYILSGDGAGTIFQINDITGDIHAIKRLDREEKAEYTLTAQAVD   79 (98)
T ss_dssp             CEEEEC----GGGCSSSCEEEEECC-BCCCCC--CEEEEEEETTBTTTEEECTTTCEEEECSCCCTTTCSEEEEEEEEEE
T ss_pred             ceEEEE----CCCCCCCCeEEEEEE-ECCCCCCCEEEEEEeCCCCCCEEEEECCccEEEECccCCCcCCCeEEEEEEEEE
Confidence            457788    8884  899999997 9999983 699999854 345899998 99999876 48888999999999999


Q ss_pred             CCC-CCceeEEEEEEEEe
Q psy4697         221 TGN-PPRQASVPAIMHFP  237 (383)
Q Consensus       221 ~g~-p~~sst~tv~I~v~  237 (383)
                      +|. |+++++++|.|.|.
T Consensus        80 ~g~~~~l~~~~~v~I~V~   97 (98)
T 1zxk_A           80 FETNKPLEPPSEFIIKVQ   97 (98)
T ss_dssp             TTTCCBSSCCEEEEEEEC
T ss_pred             CCCCCCcceeEEEEEEEE
Confidence            997 88999999999983

>2omz_B Epithelial-cadherin; leucine-rich-repeat, nvasion protein, IG-like domain, adhesi protein, cell invasion-cell adhesion complex; 1.60A {Homo sapiens} SCOP: b.1.6.1 PDB: 2omt_B 2omu_B 2omv_B 1o6s_B 2omy_B 2omx_B 3ff8_A 3ff7_A 2omw_B

Probab=99.26  E-value=1.5e-11  Score=98.83  Aligned_cols=86  Identities=15%  Similarity=0.254  Sum_probs=71.6

Q ss_pred             eEEEeccCCCCCC--CCceEEEEEeeeCCCCCeEEEEEeCCC-----CCCEEEcC-CCcEEEec-cCCCCcceEEEEEEE
Q psy4697         148 ELFLPHIPLADLT--PGSVIGKVEAADGDKGDRVTLSLRGPY-----EKMFSIND-SGHISIVD-LSALNTSTIQLVVVA  218 (383)
Q Consensus       148 ~~~v~~~~~e~~~--~g~~v~~v~A~D~D~g~~i~ysi~~~~-----~~~F~i~~-tG~i~l~~-~~~~~~~~y~L~V~a  218 (383)
                      .+.|+    |+.+  .|..|+++.| |.+....++|+|.+..     .+.|.|++ +|.|++.+ ++++....|+|.|.|
T Consensus        10 ~~~V~----En~~~~~~~~v~~v~A-d~g~N~~i~Ysi~~~~~~~~~~~~F~Id~~tG~I~~~~~LDrE~~~~y~l~V~A   84 (105)
T 2omz_B           10 PISCP----ENEKGPFPKNLVQIKS-NKDKEGKVFYSITGQGADTPPVGVFIIERETGWLKVTEPLDRERIATYTLFSHA   84 (105)
T ss_dssp             CCCEE----SSCCSSSSEEEEECEE-GGGGSSCCEEEEEEBTTTBSSTTSEEECTTTCEEEECSCCCTTTCCEEEEEEEE
T ss_pred             CEEEe----CCCCCCCCcEEEEEEC-CCCCCCeEEEEEeCCCCCCCccCEEEEeCCCCEEEECccCCcCCCCeEEEEEEE
Confidence            45678    8988  5789999999 4444457999998432     35899998 99999876 488889999999999


Q ss_pred             eeCCCCCceeEEEEEEEEeC
Q psy4697         219 TDTGNPPRQASVPAIMHFPE  238 (383)
Q Consensus       219 ~D~g~p~~sst~tv~I~v~~  238 (383)
                      +|+|.|+++++++|.|.|.+
T Consensus        85 ~D~g~p~~~~~~~v~I~V~D  104 (105)
T 2omz_B           85 VSSNGNAVEDPMEILITVTD  104 (105)
T ss_dssp             ECTTSCBSSCCEEEEEEEEC
T ss_pred             EECCCCceeeEEEEEEEEEe
Confidence            99999999999999999843

>1wyj_A Protocadherin beta 14; SS bond, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Mus musculus}

Probab=99.11  E-value=4.4e-11  Score=99.12  Aligned_cols=100  Identities=11%  Similarity=0.179  Sum_probs=81.9

Q ss_pred             CceeEEEeccCCCCCCCCceEEEEEeeeCCCCC-eE---EEEEe-CCCCCCEEEcC-CCcEEEec-cCCCCc----ceEE
Q psy4697         145 PQYELFLPHIPLADLTPGSVIGKVEAADGDKGD-RV---TLSLR-GPYEKMFSIND-SGHISIVD-LSALNT----STIQ  213 (383)
Q Consensus       145 ~~~~~~v~~~~~e~~~~g~~v~~v~A~D~D~g~-~i---~ysi~-~~~~~~F~i~~-tG~i~l~~-~~~~~~----~~y~  213 (383)
                      ..+.+.|+    |+.++|+.|++| |+|.|.+. .+   +|+|. ++..++|.|++ +|.|++.+ ++++..    ..|.
T Consensus        11 ~~~~~~V~----E~~~~Gt~V~~v-a~D~d~~~~~i~~~~Y~i~~~~~~~~F~Id~~tG~i~~~~~LDRE~~c~~~~~y~   85 (125)
T 1wyj_A           11 ATITYSVL----EETDRGSLVGNL-AKDLGLSLRELITRGAQILSKGNKQLLQLEQKSGNLLLKEKLDREELCGSTNPCI   85 (125)
T ss_dssp             CCCCEEEC----SSCCTTCEEEES-TTTTTCCHHHHHHTTCEEECSSSSCSEEECSSSSEEEESSCCCSTTTCTTCSSCC
T ss_pred             ceEEEEEE----CCCCCCCEEEEE-EecCCCCCCceeeEEEEEecCCCCCeEEEECCccEEEECccccchhhcccCCcEE
Confidence            45677899    999999999999 99999875 35   89997 45667999998 99999876 477777    8899


Q ss_pred             EEEEEeeCCCCCceeEEEEEEEEeCCcccCcccccCCCCc
Q psy4697         214 LVVVATDTGNPPRQASVPAIMHFPEAIVQQASSKLNSGTS  253 (383)
Q Consensus       214 L~V~a~D~g~p~~sst~tv~I~v~~~~~~~~p~~~~~~~~  253 (383)
                      |.|.|.+. .| . ++++|.|.| .|.|+++|.|....+.
T Consensus        86 l~v~a~~~-~p-~-~~~~V~I~V-~DvNDN~P~F~~~~y~  121 (125)
T 1wyj_A           86 LHFQVLLK-SP-V-QFIQGEIQL-QDVNDHAPEFMEDESG  121 (125)
T ss_dssp             BCCEEEET-TT-T-EEECCCEEE-CCCCCCCCCCCCCCCC
T ss_pred             EEEEEEEC-CC-C-eEEEEEEEE-EEccCCCCcCCCcEEE
Confidence            99999973 33 3 478889999 8999999999765543

>1wuz_A Pcdha4 protein, CNR-EC1; cadherin, heteronuclear protocadherin, cell adhesion; NMR {Mus musculus}

Probab=98.38  E-value=8.2e-08  Score=76.50  Aligned_cols=87  Identities=15%  Similarity=0.219  Sum_probs=63.8

Q ss_pred             ceeEEEeccCCCCCCCCceEEEEEeeeCCCCC----eEEEEEe-CCCCCCEEEcC-CCcEEEecc-CCCCc----c--eE
Q psy4697         146 QYELFLPHIPLADLTPGSVIGKVEAADGDKGD----RVTLSLR-GPYEKMFSIND-SGHISIVDL-SALNT----S--TI  212 (383)
Q Consensus       146 ~~~~~v~~~~~e~~~~g~~v~~v~A~D~D~g~----~i~ysi~-~~~~~~F~i~~-tG~i~l~~~-~~~~~----~--~y  212 (383)
                      .+.++|+    |+.++|+.|++| |.|+|.+.    .++|+|. ++..++|.|++ +|.|++.+. +++..    .  .|
T Consensus         4 ~~~~~V~----E~~~~Gt~Vg~v-a~D~~~~~~~~~~~~y~i~~~~~~~~F~Id~~tG~i~~~~~LDRE~~~~~~~~~~~   78 (103)
T 1wuz_A            4 QIHYSIP----EEAKHGTFVGRI-AQDLGLELTELVPRLFRVASKDRGDLLEVNLQNGILFVNSRIDREELCGRSAECSI   78 (103)
T ss_dssp             EEEEEEE----SSCCTTCBCCCH-HHHHTCCHHHHTTTTBCCBCSSCSCSEEEETTTTEEEECSCCSHHHHCSSSSSCEE
T ss_pred             eEEEEEE----CCCCCCCEEEEE-EeccCCCCcccccEEEEEEeCCCccEEEEECCeEEEEECCcCccccccCCCCcEEE
Confidence            4677899    999999999999 99998753    5789986 45667999997 999998764 44432    1  45


Q ss_pred             EEEEEEeeCCCCCceeEEEEEEEEeCCcccC
Q psy4697         213 QLVVVATDTGNPPRQASVPAIMHFPEAIVQQ  243 (383)
Q Consensus       213 ~L~V~a~D~g~p~~sst~tv~I~v~~~~~~~  243 (383)
                      .+.|.+.   .|.  ..++|.|.| .|.|++
T Consensus        79 ~~~v~~~---~p~--~~~~v~I~V-~DiNDN  103 (103)
T 1wuz_A           79 HLEVIVD---RPL--QVFHVEVEV-RDINDN  103 (103)
T ss_dssp             EEEEEET---TTT--EEEEEEEEE-ECCSCC
T ss_pred             EEEEEEC---CCC--EEEEEEEEE-EEcCCC
Confidence            5666552   343  377888888 566653

>1op4_A Neural-cadherin; beta sandwich, cadherin-like domain, cell adhesion; NMR {Mus musculus} SCOP: b.1.6.1

Probab=95.53  E-value=0.047  Score=46.23  Aligned_cols=80  Identities=21%  Similarity=0.342  Sum_probs=61.9

Q ss_pred             CCCCCeeecCcEEEEEECCCCCCcEEEEEEeEeCCC-CeeEEEEecCCCCCEEEcCcccEEEcccCCcccCcEEEEEEEE
Q psy4697          39 SLRELQFSKNEYSVSALENLPVNYVLLTVTTNKPRD-LRVKYWLSNDYGERFSISRQGDISLMQCLDYETEDSYRFTVYA  117 (383)
Q Consensus        39 Ndn~P~F~~~~y~~~V~En~~~gt~v~~v~A~D~D~-~~v~Ysi~~~~~~~F~Id~tG~I~~~~~LD~E~~~~y~~~V~A  117 (383)
                      -.+-|-|.+..|...++-+...|..++.|.-.|-.. ..+.|.-. ++ ..|.|+.+|.|++.+.+-.-... -.|.|.|
T Consensus        30 ~~C~pGF~~~~~~~~vp~~l~~g~~lgkV~F~dC~g~~~~~~~ss-Dp-~dFkV~~DGtVya~r~v~L~~~~-~~F~V~a  106 (159)
T 1op4_A           30 ALCKTGFPEDVYSAVLPKDVHEGQPLLNVKFSNCNRKRKVQYESS-EP-ADFKVDEDGTVYAVRSFPLTAEQ-AKFLIYA  106 (159)
T ss_dssp             CCCCCBCCSCEEEECCCCSSCSSCCEEECCCBCCSSCCCEEEECC-CS-SEEEEETTTEEEEESCCSCSSSC-EEEEEEE
T ss_pred             ccccCCcCcceeEEeccccccCCceeceeecccCCCCCceeEEcC-CC-CCeEEeCCCcEEEecceeecCCC-cEEEEEE
Confidence            457899999999778888889999999999888765 55767532 22 25999999999999987543322 3788999


Q ss_pred             ecCC
Q psy4697         118 TDTL  121 (383)
Q Consensus       118 ~D~~  121 (383)
                      .|..
T Consensus       107 ~D~~  110 (159)
T 1op4_A          107 QDKE  110 (159)
T ss_dssp             EETT
T ss_pred             EcCC
Confidence            9853

>2yhg_A SDE_182CT, cellulose-binding protein; hydrolase, glycoside hydrolase; HET: BTB; 1.08A {Saccharophagus degradans}

Probab=95.13  E-value=0.22  Score=48.89  Aligned_cols=74  Identities=24%  Similarity=0.380  Sum_probs=51.7

Q ss_pred             CCceEEEEEe---eeCCCCCeEEEEEe---CC--CCCCEEEc-CC-CcEEEeccCCCCcceEEEEEEEeeCCCCCceeEE
Q psy4697         161 PGSVIGKVEA---ADGDKGDRVTLSLR---GP--YEKMFSIN-DS-GHISIVDLSALNTSTIQLVVVATDTGNPPRQASV  230 (383)
Q Consensus       161 ~g~~v~~v~A---~D~D~g~~i~ysi~---~~--~~~~F~i~-~t-G~i~l~~~~~~~~~~y~L~V~a~D~g~p~~sst~  230 (383)
                      .|..| ++.|   +|+| |+.++|+..   +.  ......|. .+ ..+....+.......|.|.+.|+|.+.|.++++.
T Consensus       353 aG~tV-tLdAs~SsDPD-GD~LtY~W~q~~g~g~~~~~vtls~~~~~~~sft~P~~~~~~tl~f~LtVTD~~~p~lTs~~  430 (437)
T 2yhg_A          353 AGSTV-SLDASGSSDPD-GDSLNYSWSHYGEADSYSGSVSISNSSSASANVQIPSNAGGKDIHILLTLRDNGSPNLYAYR  430 (437)
T ss_dssp             TTCEE-EEECTTCBCTT-CCCEEEEEEECTTTSSCCSCCCEETTTSSEEEEECCTTCTTCEEEEEEEEEECSSSCCEEEE
T ss_pred             CCCEE-EEEeeeeeCCC-CCeEEEEEEEeCCCCccccceEeecCCCceEEEEeCCCCCCcEEEEEEEEEeCCCCCccEEe
Confidence            45554 4555   4888 888999975   21  12245664 33 3454554444456889999999999999999999


Q ss_pred             EEEEEE
Q psy4697         231 PAIMHF  236 (383)
Q Consensus       231 tv~I~v  236 (383)
                      .+.|+|
T Consensus       431 rViVtV  436 (437)
T 2yhg_A          431 RVVINV  436 (437)
T ss_dssp             EEEEEE
T ss_pred             EEEEEe
Confidence            999987

>1op4_A Neural-cadherin; beta sandwich, cadherin-like domain, cell adhesion; NMR {Mus musculus} SCOP: b.1.6.1

Probab=94.50  E-value=0.18  Score=42.67  Aligned_cols=80  Identities=19%  Similarity=0.311  Sum_probs=63.1

Q ss_pred             CCCCcccCCceeEEEeccCCCCCCCCceEEEEEeeeCCCCCeEEEEEeCCCCC-CEEEcCCCcEEEeccCCCCcceEEEE
Q psy4697         137 DWDPRFRYPQYELFLPHIPLADLTPGSVIGKVEAADGDKGDRVTLSLRGPYEK-MFSINDSGHISIVDLSALNTSTIQLV  215 (383)
Q Consensus       137 Dn~P~f~~~~~~~~v~~~~~e~~~~g~~v~~v~A~D~D~g~~i~ysi~~~~~~-~F~i~~tG~i~l~~~~~~~~~~y~L~  215 (383)
                      ...|-|....|...++    .....|..+++|...|......+.|.-.   +. .|.|+++|.+++.+...+....-.+.
T Consensus        31 ~C~pGF~~~~~~~~vp----~~l~~g~~lgkV~F~dC~g~~~~~~~ss---Dp~dFkV~~DGtVya~r~v~L~~~~~~F~  103 (159)
T 1op4_A           31 LCKTGFPEDVYSAVLP----KDVHEGQPLLNVKFSNCNRKRKVQYESS---EPADFKVDEDGTVYAVRSFPLTAEQAKFL  103 (159)
T ss_dssp             CCCCBCCSCEEEECCC----CSSCSSCCEEECCCBCCSSCCCEEEECC---CSSEEEEETTTEEEEESCCSCSSSCEEEE
T ss_pred             cccCCcCcceeEEecc----ccccCCceeceeecccCCCCCceeEEcC---CCCCeEEeCCCcEEEecceeecCCCcEEE
Confidence            3568898888866677    7888999999999999975567888743   34 79999999999887655555566899


Q ss_pred             EEEeeCCC
Q psy4697         216 VVATDTGN  223 (383)
Q Consensus       216 V~a~D~g~  223 (383)
                      |.|.|...
T Consensus       104 V~a~D~~t  111 (159)
T 1op4_A          104 IYAQDKET  111 (159)
T ss_dssp             EEEEETTT
T ss_pred             EEEEcCCC
Confidence            99999543

>3pdd_A Glycoside hydrolase, family 9; CBHA, beta-sandwich, cellulosome, unknown function; 1.72A {Clostridium thermocellum} PDB: 3pdg_A

Probab=93.10  E-value=3.7  Score=35.41  Aligned_cols=113  Identities=18%  Similarity=0.149  Sum_probs=61.6

Q ss_pred             CCeEEEEEEEEECCCCCceEEEEEEEEEeeCCCCCCeeecCcEEEEEECCCC---CC-cEEEEEEeEeCCC--CeeEEEE
Q psy4697           8 LQPITLVVRAIQYDNQDRYALATLIVSKAGTSLRELQFSKNEYSVSALENLP---VN-YVLLTVTTNKPRD--LRVKYWL   81 (383)
Q Consensus         8 ~~~y~l~V~a~D~g~~~~~s~~~v~V~V~DvNdn~P~F~~~~y~~~V~En~~---~g-t~v~~v~A~D~D~--~~v~Ysi   81 (383)
                      .-.|+|+++|.|..+. .+....+.|.|.+  ..||.-     .+.-+.+..   .| ..-.+..|.|.|.  ..+.|.+
T Consensus        60 ~G~htlta~A~D~aGn-~s~s~~v~vtV~~--~~~Ptv-----~itsP~~g~~~~~~~~vtl~~~AsD~~g~V~~Ve~~~  131 (190)
T 3pdd_A           60 VGAYNLKAVAVLSDGR-RIESPVTPVLVKV--IVKPTV-----KLTAPKSNVVAYGNEFLKITATASDSDGKISRVDFLV  131 (190)
T ss_dssp             SEEEEEEEEEEETTSC-EEECCCEEEEEEC--CCCCEE-----EEEECCTTCCCBTTSEEEEEEEEECSSSCEEEEEEEE
T ss_pred             CccEEEEEEEEECCCC-EeeecceeEEecc--CCCCce-----eecCCCCCcEEecCCeEEEEEEEECCCCcEEEEEEEE
Confidence            3579999999996532 2233346666665  346643     244444432   23 4556778888775  4455544


Q ss_pred             ecCCCCCEEEcCcccEEEcccCCcccCcEEEEEEEEecC-C-ceeEEEEEEEEee
Q psy4697          82 SNDYGERFSISRQGDISLMQCLDYETEDSYRFTVYATDT-L-MTTSATVNISVVN  134 (383)
Q Consensus        82 ~~~~~~~F~Id~tG~I~~~~~LD~E~~~~y~~~V~A~D~-~-~~s~~tV~I~V~D  134 (383)
                      .+  . ...-+..+.....-..   ....|.|++.|+|. | .+....|.|.|.+
T Consensus       132 dg--~-~v~t~t~~~y~~~~~~---~~G~~tl~a~A~D~aGn~s~s~~vtvtv~~  180 (190)
T 3pdd_A          132 DG--E-VIGSDREAPYEYEWKA---VEGNHEISVIAYDDDDAASTPDSVKIFVKQ  180 (190)
T ss_dssp             TT--E-EEEEECSSSEEEEEEC---CSEEEEEEEEEEETTCCBCCCEEEEEEEBC
T ss_pred             CC--E-EEecccCCCEEEEEec---CCeeEEEEEEEEECCCCEEecceEEEEECC
Confidence            32  1 1111111111111111   46789999999995 3 3445667777654

>3rb5_A Na/Ca exchange protein; CBD12, calcium binding and regulation, metal binding protein; 2.35A {Drosophila melanogaster} PDB: 3rb7_A 3e9u_A

Probab=91.34  E-value=8.4  Score=35.73  Aligned_cols=135  Identities=12%  Similarity=0.180  Sum_probs=70.9

Q ss_pred             CCCCCeeecCcEEEEEECCCCCCcEEEEEEeEeCCC--CeeEEEEecC---C-CCCEEEcCcccEEEc----------cc
Q psy4697          39 SLRELQFSKNEYSVSALENLPVNYVLLTVTTNKPRD--LRVKYWLSND---Y-GERFSISRQGDISLM----------QC  102 (383)
Q Consensus        39 Ndn~P~F~~~~y~~~V~En~~~gt~v~~v~A~D~D~--~~v~Ysi~~~---~-~~~F~Id~tG~I~~~----------~~  102 (383)
                      +|++..|....-...|.|+.  |+.-.+|.-+.+-.  ..|.|...+.   . .+|-..  +|.|...          ..
T Consensus         6 dd~~g~i~F~~~~y~V~E~~--g~v~vtV~R~g~~~~~vtV~y~T~~GTA~ag~Dy~~~--~gtl~F~~Get~kti~V~I   81 (298)
T 3rb5_A            6 ADDPIRMYFEPGHYTVMENC--GEFEVRVVRRGDISTYASVEYETQDGTASAGTDFVGR--KGLLSFPPGVDEQRFRIEV   81 (298)
T ss_dssp             -----CEEESSSEEEEETTS--CCEECCEEECSCCSSCEEEEEEEEESSSCBTTTBCCC--EEEEEECTTCCEECCEECB
T ss_pred             CCCceEEEEeCCEEEEecCc--eEEEEEEEEECCCCccEEEEEEeeCCccCCCCCcccc--ceEEEECCCceEEEEEEEE
Confidence            56777777777677899986  55555554433222  5678876541   1 111111  2222221          12


Q ss_pred             C---CcccCcEEEEEEEEecCC--ceeEEEEEEEEeecCCCCCcccCCceeEEEeccCCCCCCCCceEEEEEeeeCCCCC
Q psy4697         103 L---DYETEDSYRFTVYATDTL--MTTSATVNISVVNVNDWDPRFRYPQYELFLPHIPLADLTPGSVIGKVEAADGDKGD  177 (383)
Q Consensus       103 L---D~E~~~~y~~~V~A~D~~--~~s~~tV~I~V~DvNDn~P~f~~~~~~~~v~~~~~e~~~~g~~v~~v~A~D~D~g~  177 (383)
                      +   -+|....|.+.+..-.++  +....+.+|.|.| ||++|.|....-...+.    |+.  |....+|.-.-.-.|.
T Consensus        82 ~dD~~~E~dEtF~v~Ls~p~~~a~lg~~~~atvtI~d-dD~~g~~~f~~~~~~V~----E~~--g~~~~~V~Rs~~~~g~  154 (298)
T 3rb5_A           82 IDDDVFEEDECFYIRLFNPSEGVKLAVPMIATVMILD-DDHAGIFAFTDSVFEIT----ESV--GRFELKVMRYSGARGT  154 (298)
T ss_dssp             CCCSSCCCCEEEEEEEECCCTTCCBCSCSEEEEEEEC-CCCCCEEECSCSEEEEC----TTC--CCEEEEEEEESCCCSC
T ss_pred             eCCCCccCcEEEEEEEeCCCCCcEECCCceEEEEEec-cccccccccccccEEee----cCC--ceEEEEEEEEecCCCC
Confidence            2   234455566555443222  3344456667777 56689876655566777    664  6666666666554454


Q ss_pred             -eEEEEEe
Q psy4697         178 -RVTLSLR  184 (383)
Q Consensus       178 -~i~ysi~  184 (383)
                       .+.|...
T Consensus       155 vtV~~~T~  162 (298)
T 3rb5_A          155 VIVPYWTE  162 (298)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEec
Confidence             6777754

>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}

Probab=91.12  E-value=0.16  Score=35.85  Aligned_cols=33  Identities=21%  Similarity=0.265  Sum_probs=19.9

Q ss_pred             CceeeehhhHHHHHHHHHHHHHHh-hheeecCCCC
Q psy4697         252 TSSTVLIILGVVLIVLGFVIILLI-LYIHKNKHTK  285 (383)
Q Consensus       252 ~~~~li~~l~~i~~lL~l~~~~l~-~~~~r~~~~~  285 (383)
                      +..++ ++||+++++|+++.+.++ ..+|||++++
T Consensus         7 ~p~~L-ivlGg~~~lll~~glcI~ccvkcrhRrrq   40 (70)
T 2klu_A            7 GSMAL-IVLGGVAGLLLFIGLGIFFSVRSRHRRRQ   40 (70)
T ss_dssp             CSSHH-HHHHHHHHHHHHHHHHHHHHHHSSCCSSS
T ss_pred             hHHHH-HHHhHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            34444 788988887777655544 4445544443

>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}

Probab=91.09  E-value=0.17  Score=33.08  Aligned_cols=8  Identities=38%  Similarity=0.953  Sum_probs=3.0

Q ss_pred             hHHHHHHH
Q psy4697         260 LGVVLIVL  267 (383)
Q Consensus       260 l~~i~~lL  267 (383)
                      ++++++++
T Consensus        18 VgGv~~~~   25 (44)
T 2ks1_B           18 VGALLLLL   25 (44)
T ss_dssp             HHHHHHHH
T ss_pred             hHHHHHHH
Confidence            33333333

>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A

Probab=90.26  E-value=0.17  Score=33.02  Aligned_cols=8  Identities=13%  Similarity=0.310  Sum_probs=3.1

Q ss_pred             hhheeecC
Q psy4697         275 ILYIHKNK  282 (383)
Q Consensus       275 ~~~~~r~~  282 (383)
                      +++++||+
T Consensus        32 ~~~~RRR~   39 (44)
T 2jwa_A           32 GILIKRRQ   39 (44)
T ss_dssp             HHHHHHHC
T ss_pred             Hhheehhh
Confidence            33334443

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}

Probab=84.98  E-value=14  Score=30.02  Aligned_cols=176  Identities=11%  Similarity=0.144  Sum_probs=87.3

Q ss_pred             CCeeecCcEEEEEECCCCCCcEEEEEEeEeCCCCeeEEEEec----CCCCCEEEcCcccEEEcccCCcccCcEEEEEEEE
Q psy4697          42 ELQFSKNEYSVSALENLPVNYVLLTVTTNKPRDLRVKYWLSN----DYGERFSISRQGDISLMQCLDYETEDSYRFTVYA  117 (383)
Q Consensus        42 ~P~F~~~~y~~~V~En~~~gt~v~~v~A~D~D~~~v~Ysi~~----~~~~~F~Id~tG~I~~~~~LD~E~~~~y~~~V~A  117 (383)
                      +|.|....-...+.|+..   ..+.-.+.......+.+...+    .....+.+..+|.......+..+....|...+.-
T Consensus         7 ~P~i~~~~~~~~~~~G~~---v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~   83 (192)
T 2iep_A            7 APVITTPLETVDALVEEV---ATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRENGQLLTILSVEDSDDGIYCCTANN   83 (192)
T ss_dssp             EEEESSCCCEEEEETTSC---EEEECCEEEESCCEEEEEETTEECCTTCTTEEEEGGGTEEEESSCCGGGCEEEEEEEEC
T ss_pred             CceeecCccceeeeCCCc---EEEEeeCCCCCCCeEEEEECCEEccccCccEEEcCCccEEEEcCCCcccCeEEEEEEEc
Confidence            678887777777777642   222222321111344443322    2244567766555444566777878888887764


Q ss_pred             ecCC-ceeEEEEEEEEeecCCCCCcccCCceeEEEeccCCCCCCCCceEEEEEeeeCCCCCeEEEEEeC---CCCCCEEE
Q psy4697         118 TDTL-MTTSATVNISVVNVNDWDPRFRYPQYELFLPHIPLADLTPGSVIGKVEAADGDKGDRVTLSLRG---PYEKMFSI  193 (383)
Q Consensus       118 ~D~~-~~s~~tV~I~V~DvNDn~P~f~~~~~~~~v~~~~~e~~~~g~~v~~v~A~D~D~g~~i~ysi~~---~~~~~F~i  193 (383)
                      ..+. ......+.|..      +|.+..+.....+.    +..   .......+. ......+.+...+   .....+.+
T Consensus        84 ~~~~~~~~~~~l~v~~------~p~~~~~~~~~~~~----~g~---~~~l~C~~~-g~p~~~v~W~~~~~~~~~~~~~~~  149 (192)
T 2iep_A           84 GVGGAVESCGALQVKM------KPKITRPPINVKII----EGL---KAVLPCTTM-GNPKPSVSWIKGDSALRENSRIAV  149 (192)
T ss_dssp             SSSCCEEEEEEEEEEE------EEEEEECCCCEEEE----TTS---CEEECCEEE-EESCCEEEEEETTEECCCCSSEEE
T ss_pred             CCCceeEeEEEEEEEe------CCccccCCcceEEe----CCC---cEEEEEEEe-ccCCceEEEEeCCEEccCCCcEEE
Confidence            3333 23334444432      45555443333344    221   111112221 1111234443322   23345666


Q ss_pred             cCCCcEEEeccCCCCcceEEEEEEEeeCCCCCceeEEEEEEEE
Q psy4697         194 NDSGHISIVDLSALNTSTIQLVVVATDTGNPPRQASVPAIMHF  236 (383)
Q Consensus       194 ~~tG~i~l~~~~~~~~~~y~L~V~a~D~g~p~~sst~tv~I~v  236 (383)
                      ..+|.+.+......+.+.|...+.  ...+...+.++.|.|.+
T Consensus       150 ~~~~~L~i~~~~~~d~G~Y~C~a~--n~~g~~~s~~~~l~V~~  190 (192)
T 2iep_A          150 LESGSLRIHNVQKEDAGQYRCVAK--NSLGTAYSKLVKLEVEV  190 (192)
T ss_dssp             CTTSCEEESSCCGGGCEEEEEEEE--ETTEEEECCCEEEEEEC
T ss_pred             ecCCcEEEecCChhhCEEEEEEEE--cCCCcEEEEEEEEEEEe
Confidence            667788777766677888877654  33322233445555544

>3pdd_A Glycoside hydrolase, family 9; CBHA, beta-sandwich, cellulosome, unknown function; 1.72A {Clostridium thermocellum} PDB: 3pdg_A

Probab=83.54  E-value=20  Score=30.62  Aligned_cols=115  Identities=14%  Similarity=0.127  Sum_probs=63.5

Q ss_pred             cCcEEEEEEEEecC-CceeE-EEEEEEEeecCCCCCcccCCceeEEEeccCCCCC-C--CCc-eEEEEEeeeCCCC-CeE
Q psy4697         107 TEDSYRFTVYATDT-LMTTS-ATVNISVVNVNDWDPRFRYPQYELFLPHIPLADL-T--PGS-VIGKVEAADGDKG-DRV  179 (383)
Q Consensus       107 ~~~~y~~~V~A~D~-~~~s~-~tV~I~V~DvNDn~P~f~~~~~~~~v~~~~~e~~-~--~g~-~v~~v~A~D~D~g-~~i  179 (383)
                      ....|.|++.|+|. |..+. ..+.|.|.+  ..+|..     .+..|    .+. .  .|. +-.+..|.|.|.+ ..+
T Consensus        59 ~~G~htlta~A~D~aGn~s~s~~v~vtV~~--~~~Ptv-----~itsP----~~g~~~~~~~~vtl~~~AsD~~g~V~~V  127 (190)
T 3pdd_A           59 AVGAYNLKAVAVLSDGRRIESPVTPVLVKV--IVKPTV-----KLTAP----KSNVVAYGNEFLKITATASDSDGKISRV  127 (190)
T ss_dssp             CSEEEEEEEEEEETTSCEEECCCEEEEEEC--CCCCEE-----EEEEC----CTTCCCBTTSEEEEEEEEECSSSCEEEE
T ss_pred             CCccEEEEEEEEECCCCEeeecceeEEecc--CCCCce-----eecCC----CCCcEEecCCeEEEEEEEECCCCcEEEE
Confidence            35689999999995 44433 457777776  346653     23333    222 1  243 4456777877632 256


Q ss_pred             EEEEeCCCCCCEEEcCCCcE-EEeccCCCCcceEEEEEEEeeCCCCCceeEEEEEEEEeCC
Q psy4697         180 TLSLRGPYEKMFSINDSGHI-SIVDLSALNTSTIQLVVVATDTGNPPRQASVPAIMHFPEA  239 (383)
Q Consensus       180 ~ysi~~~~~~~F~i~~tG~i-~l~~~~~~~~~~y~L~V~a~D~g~p~~sst~tv~I~v~~~  239 (383)
                      .|.+.|.   ...-+.++.. +....   ..+.|.|.++|+|..+-. +....|.|.|.++
T Consensus       128 e~~~dg~---~v~t~t~~~y~~~~~~---~~G~~tl~a~A~D~aGn~-s~s~~vtvtv~~~  181 (190)
T 3pdd_A          128 DFLVDGE---VIGSDREAPYEYEWKA---VEGNHEISVIAYDDDDAA-STPDSVKIFVKQA  181 (190)
T ss_dssp             EEEETTE---EEEEECSSSEEEEEEC---CSEEEEEEEEEEETTCCB-CCCEEEEEEEBCG
T ss_pred             EEEECCE---EEecccCCCEEEEEec---CCeeEEEEEEEEECCCCE-EecceEEEEECCc
Confidence            6666431   1111111111 11111   568999999999985432 3455677777443

>2k9y_A Ephrin type-A receptor 2; receptor tyrosine kinase, membrane protein, dimeric transmembrane domain, ephrin receptor, ATP-binding, glycoprotein; NMR {Homo sapiens}

Probab=82.83  E-value=0.98  Score=28.74  Aligned_cols=8  Identities=25%  Similarity=0.762  Sum_probs=3.5

Q ss_pred             hhheeecC
Q psy4697         275 ILYIHKNK  282 (383)
Q Consensus       275 ~~~~~r~~  282 (383)
                      ++++|||+
T Consensus        33 ~~~~~rRr   40 (41)
T 2k9y_A           33 GFFIHRRR   40 (41)
T ss_dssp             HHSSSSSC
T ss_pred             heeEeeec
Confidence            34445543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	383
d1op4a_	136	b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus muscu	2e-09
d1l3wa4	107	b.1.6.1 (A:327-433) C-cadherin ectodomain {African	3e-08
d1l3wa4	107	b.1.6.1 (A:327-433) C-cadherin ectodomain {African	0.004
d1l3wa3	113	b.1.6.1 (A:214-326) C-cadherin ectodomain {African	8e-07
d1l3wa2	113	b.1.6.1 (A:101-213) C-cadherin ectodomain {African	3e-05
d1edha2	112	b.1.6.1 (A:102-213) E-cadherin (epithelial) {Mouse	5e-04
d1edha2	112	b.1.6.1 (A:102-213) E-cadherin (epithelial) {Mouse	0.002
d2omzb1	104	b.1.6.1 (B:-2-101) E-cadherin (epithelial) {Human	6e-04
d1ncja2	114	b.1.6.1 (A:102-215) N-cadherin (neural) {Mouse (Mu	0.001
d1ncja2	114	b.1.6.1 (A:102-215) N-cadherin (neural) {Mouse (Mu	0.001
d1l3wa1	100	b.1.6.1 (A:1-100) C-cadherin ectodomain {African c	0.002

>d1op4a_ b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus musculus) [TaxId: 10090]} Length = 136

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: N-cadherin (neural)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 53.1 bits (126), Expect = 2e-09
 Identities = 19/110 (17%), Positives = 38/110 (34%), Gaps = 4/110 (3%)

Query: 44  QFSKNEYSVSALENLPVNYVLLTVTTNKPRDLRVKYWLSNDYGERFSISRQGDISLMQCL 103
            F ++ YS    +++     LL V  +   + + K    +     F +   G +  ++  
Sbjct: 12  GFPEDVYSAVLPKDVHEGQPLLNVKFSNC-NRKRKVQYESSEPADFKVDEDGTVYAVRSF 70

Query: 104 DYETEDSYRFTVYATDTLMTTSA--TVNISVVNVNDWDPRFRYPQYELFL 151
               E   +F +YA D          VN+S       +P     + E  +
Sbjct: 71  PLTAEQ-AKFLIYAQDKETQEKWQVAVNLSREPTLTEEPMKEPHEIEEIV 119

>d1l3wa4 b.1.6.1 (A:327-433) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score = 49.2 bits (116), Expect = 3e-08
 Identities = 17/103 (16%), Positives = 37/103 (35%), Gaps = 11/103 (10%)

Query: 44  QFSKNEYSVSALENLPVNYVLLTVTTNKPRD----LRVKYWLSNDYGERFSISRQGDISL 99
            F      V   E+L     ++++    P          +  ++           G ++ 
Sbjct: 5   FFVPAVSRVDVSEDLSRGEKIISLVAQDPDKQQIQKLSYFIGNDPARWLTVNKDNGIVTG 64

Query: 100 MQCLDYETE----DSYRFTVYATDT---LMTTSATVNISVVNV 135
              LD E+E    ++Y   +  TD    + T + T+ + V++V
Sbjct: 65  NGNLDRESEYVKNNTYTVIMLVTDDGVSVGTGTGTLILHVLDV 107

>d1l3wa4 b.1.6.1 (A:327-433) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score = 34.6 bits (78), Expect = 0.004
 Identities = 15/99 (15%), Positives = 31/99 (31%), Gaps = 12/99 (12%)

Query: 140 PRFRYPQYELFLPHIPLADLTPGSVIGKVEAAD---GDKGDRVTLSLRGPYEKMFSINDS 196
           P F      + +      DL+ G  I  + A D                P   +    D+
Sbjct: 4   PFFVPAVSRVDVSE----DLSRGEKIISLVAQDPDKQQIQKLSYFIGNDPARWLTVNKDN 59

Query: 197 GHISIV-----DLSALNTSTIQLVVVATDTGNPPRQASV 230
           G ++       +   +  +T  ++++ TD G      + 
Sbjct: 60  GIVTGNGNLDRESEYVKNNTYTVIMLVTDDGVSVGTGTG 98

>d1l3wa3 b.1.6.1 (A:214-326) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 113

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score = 45.4 bits (106), Expect = 8e-07
 Identities = 22/108 (20%), Positives = 43/108 (39%), Gaps = 17/108 (15%)

Query: 44  QFSKNEYSVSALENLPVNYVLLTVTTNKPRD-----LRVKYWLSNDYGERFSI-----SR 93
            F    Y+    EN  + + +  ++            +  Y +  + G  F+I     S 
Sbjct: 7   IFDPKTYTALVPEN-EIGFEVQRLSVTDLDMPGTPAWQAVYKIRVNEGGFFNITTDPESN 65

Query: 94  QGDISLMQCLDYETEDSYRFTVYATD------TLMTTSATVNISVVNV 135
           QG ++  + LD+E    Y   +   +       L T++ATV ++V +V
Sbjct: 66  QGILTTAKGLDFELRKQYVLQITVENAEPFSVPLPTSTATVTVTVEDV 113

>d1l3wa2 b.1.6.1 (A:101-213) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 113

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score = 40.8 bits (94), Expect = 3e-05
 Identities = 19/106 (17%), Positives = 37/106 (34%), Gaps = 16/106 (15%)

Query: 44  QFSKNEYSVSALENLPVNYVLLTVTTNKPRDLR-----------VKYWLSNDYGERFSIS 92
           +F+++ +  S  E +     ++ V+     D             +K          F+I+
Sbjct: 7   KFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPNLFTIN 66

Query: 93  RQGDISLM--QCLDYETEDSYRFTVYATDT---LMTTSATVNISVV 133
           R+  +  +    LD E    Y  TV ATD     ++      I + 
Sbjct: 67  RETGVISLIGTGLDREKFPEYTLTVQATDLEGAGLSVEGKAIIQIT 112

>d1edha2 b.1.6.1 (A:102-213) E-cadherin (epithelial) {Mouse (Mus musculus) [TaxId: 10090]} Length = 112

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: E-cadherin (epithelial)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.4 bits (85), Expect = 5e-04
 Identities = 26/113 (23%), Positives = 40/113 (35%), Gaps = 17/113 (15%)

Query: 136 NDWDPRFRYPQYELFLPHIPLADLTPGSVIGKVEAADGDKGDR----------VTLSLRG 185
           ND  P F    +E  +         PG+ + KV A D D              V+     
Sbjct: 1   NDNRPEFTQEVFEGSVAE----GAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPEL 56

Query: 186 PYEKMFSINDSGHISIVDLS---ALNTSTIQLVVVATDTGNPPRQASVPAIMH 235
           P++ MF++N    +  V  S     +  T  LVV A D        +  A++ 
Sbjct: 57  PHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVIT 109

>d1edha2 b.1.6.1 (A:102-213) E-cadherin (epithelial) {Mouse (Mus musculus) [TaxId: 10090]} Length = 112

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: E-cadherin (epithelial)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.5 bits (80), Expect = 0.002
 Identities = 19/105 (18%), Positives = 40/105 (38%), Gaps = 16/105 (15%)

Query: 44  QFSKNEYSVSALENLPVNYVLLTVTTNKPR------DLRVKYWLSNDYGER-----FSIS 92
           +F++  +  S  E       ++ V+           +  + Y + +   E      F+++
Sbjct: 6   EFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVN 65

Query: 93  RQGDISL--MQCLDYETEDSYRFTVYATDT---LMTTSATVNISV 132
           R   +       LD E+  +Y   V A D     ++T+A   I+V
Sbjct: 66  RDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITV 110

>d2omzb1 b.1.6.1 (B:-2-101) E-cadherin (epithelial) {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: E-cadherin (epithelial)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.6 bits (84), Expect = 6e-04
 Identities = 15/95 (15%), Positives = 31/95 (32%), Gaps = 9/95 (9%)

Query: 145 PQYELFLPHIPLADLTPGSVIGKVEAADGDKGD--RVTLSLRG-----PYEKMFSIN-DS 196
           P     +P I   +   G     +     +K    +V  S+ G     P   +F I  ++
Sbjct: 1   PLGSWVIPPISCPENEKGPFPKNLVQIKSNKDKEGKVFYSITGQGADTPPVGVFIIERET 60

Query: 197 GHISIVDLSAL-NTSTIQLVVVATDTGNPPRQASV 230
           G + + +       +T  L   A  +     +  +
Sbjct: 61  GWLKVTEPLDRERIATYTLFSHAVSSNGNAVEDPM 95

>d1ncja2 b.1.6.1 (A:102-215) N-cadherin (neural) {Mouse (Mus musculus) [TaxId: 10090]} Length = 114

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: N-cadherin (neural)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.2 bits (82), Expect = 0.001
 Identities = 24/105 (22%), Positives = 38/105 (36%), Gaps = 16/105 (15%)

Query: 136 NDWDPRFRYPQYELFLPHIPLADLTPGSVIGKVEAADGDKGDR---------VTLSLRGP 186
           ND  P F +  +   +P        PG+ +  V A D D  +          V+ +   P
Sbjct: 1   NDNRPEFLHQVWNGSVPE----GSKPGTYVMTVTAIDADDPNALNGMLRYRIVSQAPSTP 56

Query: 187 YEKMFSINDSGHISIVDLSALN---TSTIQLVVVATDTGNPPRQA 228
              MF+IN+     I   + L+        L++ ATD    P   
Sbjct: 57  SPNMFTINNETGDIITVAAGLDREKVQQYTLIIQATDMEGNPTYG 101

>d1ncja2 b.1.6.1 (A:102-215) N-cadherin (neural) {Mouse (Mus musculus) [TaxId: 10090]} Length = 114

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: N-cadherin (neural)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.2 bits (82), Expect = 0.001
 Identities = 21/107 (19%), Positives = 37/107 (34%), Gaps = 18/107 (16%)

Query: 44  QFSKNEYSVSALENLPVNYVLLTVTTNKPRDLRVKYWLS----------NDYGERFSISR 93
           +F    ++ S  E       ++TVT     D      +                 F+I+ 
Sbjct: 6   EFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNGMLRYRIVSQAPSTPSPNMFTINN 65

Query: 94  QGD--ISLMQCLDYETEDSYRFTVYATD------TLMTTSATVNISV 132
           +    I++   LD E    Y   + ATD        ++ +AT  I+V
Sbjct: 66  ETGDIITVAAGLDREKVQQYTLIIQATDMEGNPTYGLSNTATAVITV 112

>d1l3wa1 b.1.6.1 (A:1-100) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score = 35.5 bits (81), Expect = 0.002
 Identities = 13/89 (14%), Positives = 30/89 (33%), Gaps = 9/89 (10%)

Query: 151 LPHIPLADLTPGSVIGKVEAADGDKGD--RVTLSLRGP-----YEKMFSIN-DSGHISIV 202
           +P I +++   G    ++     +K    +V  S+ G       + +F I  ++G + + 
Sbjct: 4   IPPIKVSENERGPFPKRLVQIKSNKDRFNKVYYSITGQGADNPPQGVFRIEWETGWMLVT 63

Query: 203 DLSALNT-STIQLVVVATDTGNPPRQASV 230
                       L   A      P +  +
Sbjct: 64  RPLDREEYDKYVLSSHAVSENGSPVEEPM 92

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	383
d1l3wa2	113	C-cadherin ectodomain {African clawed frog (Xenopu	99.81
d1edha2	112	E-cadherin (epithelial) {Mouse (Mus musculus) [Tax	99.81
d1op4a_	136	N-cadherin (neural) {Mouse (Mus musculus) [TaxId:	99.8
d1l3wa4	107	C-cadherin ectodomain {African clawed frog (Xenopu	99.78
d1ncja2	114	N-cadherin (neural) {Mouse (Mus musculus) [TaxId:	99.78
d1l3wa3	113	C-cadherin ectodomain {African clawed frog (Xenopu	99.71
d1edha2	112	E-cadherin (epithelial) {Mouse (Mus musculus) [Tax	99.68
d1l3wa2	113	C-cadherin ectodomain {African clawed frog (Xenopu	99.67
d1l3wa4	107	C-cadherin ectodomain {African clawed frog (Xenopu	99.65
d1l3wa5	107	C-cadherin ectodomain {African clawed frog (Xenopu	99.61
d1ncja2	114	N-cadherin (neural) {Mouse (Mus musculus) [TaxId:	99.58
d1op4a_	136	N-cadherin (neural) {Mouse (Mus musculus) [TaxId:	99.54
d1l3wa3	113	C-cadherin ectodomain {African clawed frog (Xenopu	99.51
d2omzb1	104	E-cadherin (epithelial) {Human (Homo sapiens) [Tax	99.41
d1ncia_	102	N-cadherin (neural) {Mouse (Mus musculus) [TaxId:	99.4
d1l3wa1	100	C-cadherin ectodomain {African clawed frog (Xenopu	99.37
d1l3wa5	107	C-cadherin ectodomain {African clawed frog (Xenopu	99.28
d2omzb1	104	E-cadherin (epithelial) {Human (Homo sapiens) [Tax	99.04
d1l3wa1	100	C-cadherin ectodomain {African clawed frog (Xenopu	99.0
d1ncia_	102	N-cadherin (neural) {Mouse (Mus musculus) [TaxId:	98.99
d1u2ca1	103	Dystroglycan, N-terminal domain {Mouse (Mus muscul	82.83
d1u2ca1	103	Dystroglycan, N-terminal domain {Mouse (Mus muscul	82.68

>d1l3wa2 b.1.6.1 (A:101-213) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=99.81  E-value=6.4e-20  Score=147.94  Aligned_cols=97  Identities=24%  Similarity=0.319  Sum_probs=87.2

Q ss_pred             CCCCCCeeecCcEEEEEECCCCCCcEEEEEEeEeCCC------CeeEEEEec-----CCCCCEEEcC-cccEEEc-ccCC
Q psy4697          38 TSLRELQFSKNEYSVSALENLPVNYVLLTVTTNKPRD------LRVKYWLSN-----DYGERFSISR-QGDISLM-QCLD  104 (383)
Q Consensus        38 vNdn~P~F~~~~y~~~V~En~~~gt~v~~v~A~D~D~------~~v~Ysi~~-----~~~~~F~Id~-tG~I~~~-~~LD  104 (383)
                      +|||+|+|.+..|.+.|+||.++|+.|+++.|+|+|.      +.+.|+|..     ....+|.|++ +|.|++. +.||
T Consensus         1 eNDn~P~F~~~~y~~~V~En~~~gt~v~~v~A~D~D~~~~~~n~~i~y~i~~~~~~~~~~~~F~i~~~tG~i~~~~~~LD   80 (113)
T d1l3wa2           1 QNDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPNLFTINRETGVISLIGTGLD   80 (113)
T ss_dssp             CSCCCCEESSSCEEEEEETTCCSSEEEEECCEECCSCCSSSSTTCCEEEEEEESSCCSCSCSEEECTTTCEEEECSCCCC
T ss_pred             CCCCCCccCCCeEEEEEECCCCCCCEEEEEEeecccccccccceEEEEEEecCCCCccccceeeeeecceeEEEeccccC
Confidence            5999999999999999999999999999999999994      579999976     2246899996 9999885 6899


Q ss_pred             cccCcEEEEEEEEecCC---ceeEEEEEEEEee
Q psy4697         105 YETEDSYRFTVYATDTL---MTTSATVNISVVN  134 (383)
Q Consensus       105 ~E~~~~y~~~V~A~D~~---~~s~~tV~I~V~D  134 (383)
                      ||....|.|.|.|+|.+   ++++++|.|+|+|
T Consensus        81 ~E~~~~y~l~V~a~D~~~~~~~~~~~v~I~V~D  113 (113)
T d1l3wa2          81 REKFPEYTLTVQATDLEGAGLSVEGKAIIQITD  113 (113)
T ss_dssp             TTTCCEEEEEEEEEHHHHTSCEEECCEEEEEEC
T ss_pred             cccCCEEEEEEEEEECCCCCcEEEEEEEEEEEC
Confidence            99999999999999943   7899999999987

>d1edha2 b.1.6.1 (A:102-213) E-cadherin (epithelial) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: E-cadherin (epithelial)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.81  E-value=1.5e-19  Score=145.30  Aligned_cols=96  Identities=23%  Similarity=0.333  Sum_probs=86.6

Q ss_pred             CCCCCeeecCcEEEEEECCCCCCcEEEEEEeEeCCC------CeeEEEEec-----CCCCCEEEcC-cccEEE-cccCCc
Q psy4697          39 SLRELQFSKNEYSVSALENLPVNYVLLTVTTNKPRD------LRVKYWLSN-----DYGERFSISR-QGDISL-MQCLDY  105 (383)
Q Consensus        39 Ndn~P~F~~~~y~~~V~En~~~gt~v~~v~A~D~D~------~~v~Ysi~~-----~~~~~F~Id~-tG~I~~-~~~LD~  105 (383)
                      |||+|+|.+..|.+.|+||.++|+.|+++.|+|+|.      +.++|+|..     ....+|.|++ +|.|++ .+.|||
T Consensus         1 NDn~P~F~~~~y~~~V~E~~~~gt~v~~v~A~D~D~g~~~~n~~v~y~i~~~~~~~~~~~~F~i~~~tG~i~~~~~~lD~   80 (112)
T d1edha2           1 NDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDR   80 (112)
T ss_dssp             SCCCCEESCSEEEEEEETTCCTTCEEEECCEECCSCTTTCSTTCCEEEEEEEESCCSCSCSEEECTTTCEEEECSSCCCT
T ss_pred             CCCCCccCCCEEEEEEECCCCCCCEEEEEEEEecccCCccccceEEEEEecCCccccceeEEEEecccceEEEEeccccc
Confidence            899999999999999999999999999999999994      579999976     2346899996 999986 467999


Q ss_pred             ccCcEEEEEEEEecCC---ceeEEEEEEEEee
Q psy4697         106 ETEDSYRFTVYATDTL---MTTSATVNISVVN  134 (383)
Q Consensus       106 E~~~~y~~~V~A~D~~---~~s~~tV~I~V~D  134 (383)
                      |....|.|+|.|+|++   ++++++|.|+|+|
T Consensus        81 E~~~~y~l~V~a~D~g~~~~~~~~~v~I~V~D  112 (112)
T d1edha2          81 ESYPTYTLVVQAADLQGEGLSTTAKAVITVKD  112 (112)
T ss_dssp             TTCCEEEEEEEEETGGGTSCEEEEEEEEEEEC
T ss_pred             ccCcEEEEEEEEEECCCCccEEEEEEEEEEEC
Confidence            9999999999999965   7889999999987

>d1op4a_ b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: N-cadherin (neural)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.80  E-value=1.7e-20  Score=156.56  Aligned_cols=121  Identities=21%  Similarity=0.267  Sum_probs=103.5

Q ss_pred             eCCCCCCeeecCcEEEEEECCCCCCcEEEEEEeEeCCC-CeeEEEEecCCCCCEEEcCcccEEEcccCCcccCcEEEEEE
Q psy4697          37 GTSLRELQFSKNEYSVSALENLPVNYVLLTVTTNKPRD-LRVKYWLSNDYGERFSISRQGDISLMQCLDYETEDSYRFTV  115 (383)
Q Consensus        37 DvNdn~P~F~~~~y~~~V~En~~~gt~v~~v~A~D~D~-~~v~Ysi~~~~~~~F~Id~tG~I~~~~~LD~E~~~~y~~~V  115 (383)
                      |+|++.|.|.+..|.+.|+||.++|+.|++|.|+|+|. +.+.|++.++  ..|.|+++|.|++.+.||||.. .|.|.|
T Consensus         5 ~~~~c~P~F~~~~Y~~~V~E~~~~Gt~v~~V~a~D~d~~~~~~y~~~~~--~~F~i~~~G~I~~~~~ld~e~~-~y~l~V   81 (136)
T d1op4a_           5 EIALCKTGFPEDVYSAVLPKDVHEGQPLLNVKFSNCNRKRKVQYESSEP--ADFKVDEDGTVYAVRSFPLTAE-QAKFLI   81 (136)
T ss_dssp             CCCCCCCBCCSCEEEECCCCSSCSSCCEEECCCBCCSSCCCEEEECCCS--SEEEEETTTEEEEESCCSCSSS-CEEEEE
T ss_pred             CCCCccceecCCeEEEEEECCCCCCCEEEEeEeecCCccccceeccccc--eeeeccccEEEEEecccCcccc-eEEEEE
Confidence            78999999999999999999999999999999999997 7899998543  4699999999999999999975 699999


Q ss_pred             EEecCC--ceeEEEEEEEEeecCCCCCcccCCce-eEEEeccCCCCCCCCce
Q psy4697         116 YATDTL--MTTSATVNISVVNVNDWDPRFRYPQY-ELFLPHIPLADLTPGSV  164 (383)
Q Consensus       116 ~A~D~~--~~s~~tV~I~V~DvNDn~P~f~~~~~-~~~v~~~~~e~~~~g~~  164 (383)
                      .|+|+|  ..+.++|.|.+.|.|||.|.|....+ .+.+|    ++...|..
T Consensus        82 ~A~D~g~~~~~~t~V~i~v~d~nd~~p~~~~~~~~~i~~P----~~~~~~~~  129 (136)
T d1op4a_          82 YAQDKETQEKWQVAVNLSREPTLTEEPMKEPHEIEEIVFP----RQLAKHSG  129 (136)
T ss_dssp             EEEETTTTEEEEEEEEECCCCCCCCCCSSCCCCSCCCSSC----CCCCCCCS
T ss_pred             EEEecCCcceeeeEEEEEEcccCCCCCcccCCCCceEEcc----CcCCCCCC
Confidence            999976  45678899999999999999875543 45556    55555543

>d1l3wa4 b.1.6.1 (A:327-433) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=99.78  E-value=1.1e-19  Score=145.10  Aligned_cols=96  Identities=20%  Similarity=0.322  Sum_probs=88.3

Q ss_pred             CCCCeeecCcEEEEEECCCCCCcEEEEEEeEeCCC---CeeEEEEecCCCCCEEEcC-cccEEEcccCCccc----CcEE
Q psy4697          40 LRELQFSKNEYSVSALENLPVNYVLLTVTTNKPRD---LRVKYWLSNDYGERFSISR-QGDISLMQCLDYET----EDSY  111 (383)
Q Consensus        40 dn~P~F~~~~y~~~V~En~~~gt~v~~v~A~D~D~---~~v~Ysi~~~~~~~F~Id~-tG~I~~~~~LD~E~----~~~y  111 (383)
                      ||||+|.+..|.+.|+||.++|+.|+++.|+|+|.   +.++|+|.++..++|.|++ +|.|++.+.||||.    ...|
T Consensus         1 Dn~P~F~~~~~~~~v~E~~~~g~~v~~v~A~D~D~~~~~~i~y~i~~~~~~~F~id~~tG~i~~~~~lD~E~~~~~~~~y   80 (107)
T d1l3wa4           1 NEAPFFVPAVSRVDVSEDLSRGEKIISLVAQDPDKQQIQKLSYFIGNDPARWLTVNKDNGIVTGNGNLDRESEYVKNNTY   80 (107)
T ss_dssp             CCCCEESSCEECCCBCTTCCSSEEEEECCEECCCTTCCCCEEEEECCCSSCCCEEETTTTEEEECSCCCTTSSSCCSSCC
T ss_pred             CcCCCcCCCeEEEEEECCCCCCCEEEEeEEecCCcCcCCceeEEecCCCcccceeccccceEEEccccChhhccccCCeE
Confidence            68999999999999999999999999999999995   7899999887888999996 99999999999996    3679


Q ss_pred             EEEEEEecCC---ceeEEEEEEEEeec
Q psy4697         112 RFTVYATDTL---MTTSATVNISVVNV  135 (383)
Q Consensus       112 ~~~V~A~D~~---~~s~~tV~I~V~Dv  135 (383)
                      .+.|.|+|+|   ++++++|.|+|+||
T Consensus        81 ~l~v~a~D~g~p~~~~t~~v~V~V~DV  107 (107)
T d1l3wa4          81 TVIMLVTDDGVSVGTGTGTLILHVLDV  107 (107)
T ss_dssp             EEEEEEEECSSSCCCCCEEEECCBCCC
T ss_pred             EEEEEEEECCcCCcEEEEEEEEEEEeC
Confidence            9999999976   67889999999986

>d1ncja2 b.1.6.1 (A:102-215) N-cadherin (neural) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: N-cadherin (neural)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.78  E-value=5.4e-19  Score=142.38  Aligned_cols=96  Identities=25%  Similarity=0.329  Sum_probs=82.7

Q ss_pred             CCCCCeeecCcEEEEEECCCCCCcEEEEEEeEeCCC-----CeeEEEEec-----CCCCCEEEcC-cccE-EEcccCCcc
Q psy4697          39 SLRELQFSKNEYSVSALENLPVNYVLLTVTTNKPRD-----LRVKYWLSN-----DYGERFSISR-QGDI-SLMQCLDYE  106 (383)
Q Consensus        39 Ndn~P~F~~~~y~~~V~En~~~gt~v~~v~A~D~D~-----~~v~Ysi~~-----~~~~~F~Id~-tG~I-~~~~~LD~E  106 (383)
                      |||+|+|.+..|.+.|+||.++|+.|+++.|+|+|.     +.++|+|..     ....+|.|++ +|.| ++.+.||||
T Consensus         1 NDn~P~F~~~~y~~~V~En~~~gt~v~~v~A~D~D~~~~~n~~i~y~i~~~~~~~~~~~~F~i~~~tG~i~~~~~~lD~E   80 (114)
T d1ncja2           1 NDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNGMLRYRIVSQAPSTPSPNMFTINNETGDIITVAAGLDRE   80 (114)
T ss_dssp             CCSCCCCSCSEEEEEECSSCCTTCEEEECCC-CCSCTTSTTTCCEEEEEEEESCCSCSCCEEECSSSCEEEECSSCCCTT
T ss_pred             CCCCCCcCCCeEEEEEeCCCCCCCEEEEEEEEECCCCccccceeEEEeccCCcCCCccceEEecCccceEEEeccccccc
Confidence            899999999999999999999999999999999983     689999975     2346899996 9976 567899999


Q ss_pred             cCcEEEEEEEEecCC------ceeEEEEEEEEee
Q psy4697         107 TEDSYRFTVYATDTL------MTTSATVNISVVN  134 (383)
Q Consensus       107 ~~~~y~~~V~A~D~~------~~s~~tV~I~V~D  134 (383)
                      ....|.|.|.|+|.+      +++.++|.|.|.|
T Consensus        81 ~~~~y~l~V~A~D~~~~~~~~~ss~~~v~I~V~D  114 (114)
T d1ncja2          81 KVQQYTLIIQATDMEGNPTYGLSNTATAVITVTD  114 (114)
T ss_dssp             TCSEEEEEEEEESGGGCBTTBCEEEEEEEEEEC-
T ss_pred             cCCEEEEEEEEEECCCCCCCCceEEEEEEEEEEC
Confidence            999999999999943      5678888888876

>d1l3wa3 b.1.6.1 (A:214-326) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=99.71  E-value=1.1e-17  Score=134.08  Aligned_cols=96  Identities=21%  Similarity=0.333  Sum_probs=83.7

Q ss_pred             CCCCCeeecCcEEEEEECCCCCCcEEEEEEeEeCCC-----CeeEEEEecCCCCCEEEc-----CcccEEEcccCCcccC
Q psy4697          39 SLRELQFSKNEYSVSALENLPVNYVLLTVTTNKPRD-----LRVKYWLSNDYGERFSIS-----RQGDISLMQCLDYETE  108 (383)
Q Consensus        39 Ndn~P~F~~~~y~~~V~En~~~gt~v~~v~A~D~D~-----~~v~Ysi~~~~~~~F~Id-----~tG~I~~~~~LD~E~~  108 (383)
                      |||+|+|.++.|.++|+|| ++|+.|+++.|+|+|.     ..+.|.+.+.....|.|.     .+|.|++.+.||||..
T Consensus         2 NDn~P~F~~~~y~~~v~En-~~g~~v~~v~A~D~D~~~~~~~~~~~~~~~~~~~~f~i~~~~~~~~g~i~~~~~lD~E~~   80 (113)
T d1l3wa3           2 NDNAPIFDPKTYTALVPEN-EIGFEVQRLSVTDLDMPGTPAWQAVYKIRVNEGGFFNITTDPESNQGILTTAKGLDFELR   80 (113)
T ss_dssp             CCCCCCBSCSEEEEEEESS-SCCCEEEEECBCCCSCTTSTTSCEECCBSCCTTSCEEEEECTTTCCEEEEESSCCCCSSC
T ss_pred             CCCCCEeCCCeEEEEEECC-CCCCEEEEEEEEccccCCcceeEEEEeeccccccceEEEeecCCCceEEEeeeecccccC
Confidence            9999999999999999999 5799999999999985     345555555667789884     3789999999999999


Q ss_pred             cEEEEEEEEecC---C---ceeEEEEEEEEeec
Q psy4697         109 DSYRFTVYATDT---L---MTTSATVNISVVNV  135 (383)
Q Consensus       109 ~~y~~~V~A~D~---~---~~s~~tV~I~V~Dv  135 (383)
                      +.|.|+|.|+|+   +   ++++++|.|+|+||
T Consensus        81 ~~y~l~V~a~D~~~~~~~~~~s~~~V~I~V~DV  113 (113)
T d1l3wa3          81 KQYVLQITVENAEPFSVPLPTSTATVTVTVEDV  113 (113)
T ss_dssp             CCEEEEECCEESSCCSSCCCCCCEEEEEEEECC
T ss_pred             CEEEEEEEEEECCCCCCCceEeEEEEEEEEEeC
Confidence            999999999995   2   68899999999996

>d1edha2 b.1.6.1 (A:102-213) E-cadherin (epithelial) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: E-cadherin (epithelial)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.68  E-value=1.3e-16  Score=127.77  Aligned_cols=98  Identities=28%  Similarity=0.417  Sum_probs=86.8

Q ss_pred             CCCCCcccCCceeEEEeccCCCCCCCCceEEEEEeeeCCCCC-----eEEEEEeC-----CCCCCEEEcC-CCcEEEe-c
Q psy4697         136 NDWDPRFRYPQYELFLPHIPLADLTPGSVIGKVEAADGDKGD-----RVTLSLRG-----PYEKMFSIND-SGHISIV-D  203 (383)
Q Consensus       136 NDn~P~f~~~~~~~~v~~~~~e~~~~g~~v~~v~A~D~D~g~-----~i~ysi~~-----~~~~~F~i~~-tG~i~l~-~  203 (383)
                      |||+|+|..+.|.+.|+    |+.++|+.|++|.|+|+|.|.     .++|+|..     ....+|.|++ +|.|++. .
T Consensus         1 NDn~P~F~~~~y~~~V~----E~~~~gt~v~~v~A~D~D~g~~~~n~~v~y~i~~~~~~~~~~~~F~i~~~tG~i~~~~~   76 (112)
T d1edha2           1 NDNRPEFTQEVFEGSVA----EGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTS   76 (112)
T ss_dssp             SCCCCEESCSEEEEEEE----TTCCTTCEEEECCEECCSCTTTCSTTCCEEEEEEEESCCSCSCSEEECTTTCEEEECSS
T ss_pred             CCCCCccCCCEEEEEEE----CCCCCCCEEEEEEEEecccCCccccceEEEEEecCCccccceeEEEEecccceEEEEec
Confidence            89999999999999999    999999999999999999763     59999852     2346899997 9999864 3


Q ss_pred             -cCCCCcceEEEEEEEeeCCCCCceeEEEEEEEEe
Q psy4697         204 -LSALNTSTIQLVVVATDTGNPPRQASVPAIMHFP  237 (383)
Q Consensus       204 -~~~~~~~~y~L~V~a~D~g~p~~sst~tv~I~v~  237 (383)
                       ++++....|.|.|.|+|+|.|+++++++|.|.|.
T Consensus        77 ~lD~E~~~~y~l~V~a~D~g~~~~~~~~~v~I~V~  111 (112)
T d1edha2          77 GLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVK  111 (112)
T ss_dssp             CCCTTTCCEEEEEEEEETGGGTSCEEEEEEEEEEE
T ss_pred             ccccccCcEEEEEEEEEECCCCccEEEEEEEEEEE
Confidence             4778899999999999999999999999999984

>d1l3wa2 b.1.6.1 (A:101-213) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=99.67  E-value=1.1e-16  Score=128.61  Aligned_cols=99  Identities=25%  Similarity=0.336  Sum_probs=87.8

Q ss_pred             cCCCCCcccCCceeEEEeccCCCCCCCCceEEEEEeeeCCCCC-----eEEEEEeC-C----CCCCEEEcC-CCcEEEe-
Q psy4697         135 VNDWDPRFRYPQYELFLPHIPLADLTPGSVIGKVEAADGDKGD-----RVTLSLRG-P----YEKMFSIND-SGHISIV-  202 (383)
Q Consensus       135 vNDn~P~f~~~~~~~~v~~~~~e~~~~g~~v~~v~A~D~D~g~-----~i~ysi~~-~----~~~~F~i~~-tG~i~l~-  202 (383)
                      +|||+|+|....|.+.|+    |+.++|+.|+++.|+|+|.|.     .+.|+|.+ +    ...+|.|++ +|.|++. 
T Consensus         1 eNDn~P~F~~~~y~~~V~----En~~~gt~v~~v~A~D~D~~~~~~n~~i~y~i~~~~~~~~~~~~F~i~~~tG~i~~~~   76 (113)
T d1l3wa2           1 QNDNRPKFTQDVFRGSVR----EGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPNLFTINRETGVISLIG   76 (113)
T ss_dssp             CSCCCCEESSSCEEEEEE----TTCCSSEEEEECCEECCSCCSSSSTTCCEEEEEEESSCCSCSCSEEECTTTCEEEECS
T ss_pred             CCCCCCccCCCeEEEEEE----CCCCCCCEEEEEEeecccccccccceEEEEEEecCCCCccccceeeeeecceeEEEec
Confidence            599999999999999999    999999999999999999763     59999962 2    236899997 9999874 


Q ss_pred             c-cCCCCcceEEEEEEEeeCCCCCceeEEEEEEEEe
Q psy4697         203 D-LSALNTSTIQLVVVATDTGNPPRQASVPAIMHFP  237 (383)
Q Consensus       203 ~-~~~~~~~~y~L~V~a~D~g~p~~sst~tv~I~v~  237 (383)
                      . ++++....|.|.|.|+|.|.|+++++++|.|.|.
T Consensus        77 ~~LD~E~~~~y~l~V~a~D~~~~~~~~~~~v~I~V~  112 (113)
T d1l3wa2          77 TGLDREKFPEYTLTVQATDLEGAGLSVEGKAIIQIT  112 (113)
T ss_dssp             CCCCTTTCCEEEEEEEEEHHHHTSCEEECCEEEEEE
T ss_pred             cccCcccCCEEEEEEEEEECCCCCcEEEEEEEEEEE
Confidence            3 5788899999999999999999999999999984

>d1l3wa4 b.1.6.1 (A:327-433) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=99.65  E-value=1.3e-16  Score=127.03  Aligned_cols=96  Identities=19%  Similarity=0.250  Sum_probs=86.0

Q ss_pred             CCCCcccCCceeEEEeccCCCCCCCCceEEEEEeeeCCCCC--eEEEEEeCCCCCCEEEcC-CCcEEEecc-CCCC----
Q psy4697         137 DWDPRFRYPQYELFLPHIPLADLTPGSVIGKVEAADGDKGD--RVTLSLRGPYEKMFSIND-SGHISIVDL-SALN----  208 (383)
Q Consensus       137 Dn~P~f~~~~~~~~v~~~~~e~~~~g~~v~~v~A~D~D~g~--~i~ysi~~~~~~~F~i~~-tG~i~l~~~-~~~~----  208 (383)
                      ||+|.|.+..|.+.++    |+.++|+.|+++.|+|+|.|.  .++|+|.++..++|.|++ +|.|++.+. +++.    
T Consensus         1 Dn~P~F~~~~~~~~v~----E~~~~g~~v~~v~A~D~D~~~~~~i~y~i~~~~~~~F~id~~tG~i~~~~~lD~E~~~~~   76 (107)
T d1l3wa4           1 NEAPFFVPAVSRVDVS----EDLSRGEKIISLVAQDPDKQQIQKLSYFIGNDPARWLTVNKDNGIVTGNGNLDRESEYVK   76 (107)
T ss_dssp             CCCCEESSCEECCCBC----TTCCSSEEEEECCEECCCTTCCCCEEEEECCCSSCCCEEETTTTEEEECSCCCTTSSSCC
T ss_pred             CcCCCcCCCeEEEEEE----CCCCCCCEEEEeEEecCCcCcCCceeEEecCCCcccceeccccceEEEccccChhhcccc
Confidence            7899999999999999    999999999999999999875  699999877778999997 999998764 4442    


Q ss_pred             cceEEEEEEEeeCCCCCceeEEEEEEEE
Q psy4697         209 TSTIQLVVVATDTGNPPRQASVPAIMHF  236 (383)
Q Consensus       209 ~~~y~L~V~a~D~g~p~~sst~tv~I~v  236 (383)
                      ...|.|.|.|+|+|.|+++++++|.|.|
T Consensus        77 ~~~y~l~v~a~D~g~p~~~~t~~v~V~V  104 (107)
T d1l3wa4          77 NNTYTVIMLVTDDGVSVGTGTGTLILHV  104 (107)
T ss_dssp             SSCCEEEEEEEECSSSCCCCCEEEECCB
T ss_pred             CCeEEEEEEEEECCcCCcEEEEEEEEEE
Confidence            4679999999999999999999999988

>d1l3wa5 b.1.6.1 (A:434-540) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=99.61  E-value=1.5e-16  Score=126.53  Aligned_cols=99  Identities=14%  Similarity=0.071  Sum_probs=83.2

Q ss_pred             CCCCCeeecCcEEEEEECCCCCCcEEEEEEeEeCCC----CeeEEEEecCCCCCEEEc--CcccEEEcccCCcccCcEEE
Q psy4697          39 SLRELQFSKNEYSVSALENLPVNYVLLTVTTNKPRD----LRVKYWLSNDYGERFSIS--RQGDISLMQCLDYETEDSYR  112 (383)
Q Consensus        39 Ndn~P~F~~~~y~~~V~En~~~gt~v~~v~A~D~D~----~~v~Ysi~~~~~~~F~Id--~tG~I~~~~~LD~E~~~~y~  112 (383)
                      |||+|+|.+..  .+|.|+.+.+.   .|+|+|+|.    ..++|+|.+.....|.+.  ..|.+...+.||+|....|.
T Consensus         1 NDNaP~f~~~~--~~v~e~~~~~~---~v~AtD~D~~~n~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ld~e~~~~y~   75 (107)
T d1l3wa5           1 NDNGPVPSPRV--FTMCDQNPEPQ---VLTISDADIPPNTYPYKVSLSHGSDLTWKAELDSKGTSMLLSPTQQLKKGDYS   75 (107)
T ss_dssp             CCSCCCBSCCC--EEECSSSCCCE---EEEBCCSSCTTTTCCCCCBCCSCSSSSCBCCBCTTSSEEEEBCSSCCCSSCBC
T ss_pred             CCCCCccCCCE--EEEEecCCCce---eEEEEcCccCccceeEeeeeecccccccccccccceeeeeeeccccccceeEE
Confidence            89999998655  46889988775   478999995    368999988666666664  47778888999999999999


Q ss_pred             EEEEEecCC-ceeEEEEEEEEeecCCCCCcc
Q psy4697         113 FTVYATDTL-MTTSATVNISVVNVNDWDPRF  142 (383)
Q Consensus       113 ~~V~A~D~~-~~s~~tV~I~V~DvNDn~P~f  142 (383)
                      |.|.|+|+| ...+++++|+|.|+|||+|.+
T Consensus        76 l~V~a~D~G~p~~~~tv~V~V~Dc~dn~~~c  106 (107)
T d1l3wa5          76 IYVLLSDAQNNPQLTVVNATVCSCEGKAIKC  106 (107)
T ss_dssp             CEEECCSSSCCCEEEECCEEECSCSSSCCCC
T ss_pred             EEEEEEeCCCCceEEEEEEEEEEeeCCcCcc
Confidence            999999976 667789999999999999976

>d1ncja2 b.1.6.1 (A:102-215) N-cadherin (neural) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: N-cadherin (neural)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.58  E-value=5.7e-15  Score=118.31  Aligned_cols=98  Identities=24%  Similarity=0.362  Sum_probs=80.6

Q ss_pred             CCCCCcccCCceeEEEeccCCCCCCCCceEEEEEeeeCCCC--C--eEEEEEeC-----CCCCCEEEcC-CCcEEE-ec-
Q psy4697         136 NDWDPRFRYPQYELFLPHIPLADLTPGSVIGKVEAADGDKG--D--RVTLSLRG-----PYEKMFSIND-SGHISI-VD-  203 (383)
Q Consensus       136 NDn~P~f~~~~~~~~v~~~~~e~~~~g~~v~~v~A~D~D~g--~--~i~ysi~~-----~~~~~F~i~~-tG~i~l-~~-  203 (383)
                      |||+|+|.++.|.+.|+    |+.++|+.|+++.|+|+|.+  .  .++|+|.+     .....|.|++ +|.+.. .. 
T Consensus         1 NDn~P~F~~~~y~~~V~----En~~~gt~v~~v~A~D~D~~~~~n~~i~y~i~~~~~~~~~~~~F~i~~~tG~i~~~~~~   76 (114)
T d1ncja2           1 NDNRPEFLHQVWNGSVP----EGSKPGTYVMTVTAIDADDPNALNGMLRYRIVSQAPSTPSPNMFTINNETGDIITVAAG   76 (114)
T ss_dssp             CCSCCCCSCSEEEEEEC----SSCCTTCEEEECCC-CCSCTTSTTTCCEEEEEEEESCCSCSCCEEECSSSCEEEECSSC
T ss_pred             CCCCCCcCCCeEEEEEe----CCCCCCCEEEEEEEEECCCCccccceeEEEeccCCcCCCccceEEecCccceEEEeccc
Confidence            89999999999999999    99999999999999999953  2  69999852     3456899997 998754 33 


Q ss_pred             cCCCCcceEEEEEEEeeCCCC---CceeEEEEEEEEe
Q psy4697         204 LSALNTSTIQLVVVATDTGNP---PRQASVPAIMHFP  237 (383)
Q Consensus       204 ~~~~~~~~y~L~V~a~D~g~p---~~sst~tv~I~v~  237 (383)
                      ++++....|.|.|.|+|.+.+   .++++++|.|.|.
T Consensus        77 lD~E~~~~y~l~V~A~D~~~~~~~~~ss~~~v~I~V~  113 (114)
T d1ncja2          77 LDREKVQQYTLIIQATDMEGNPTYGLSNTATAVITVT  113 (114)
T ss_dssp             CCTTTCSEEEEEEEEESGGGCBTTBCEEEEEEEEEEC
T ss_pred             cccccCCEEEEEEEEEECCCCCCCCceEEEEEEEEEE
Confidence            477788999999999997643   3578899999883

>d1op4a_ b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: N-cadherin (neural)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.54  E-value=1.2e-14  Score=120.60  Aligned_cols=106  Identities=15%  Similarity=0.230  Sum_probs=88.9

Q ss_pred             ecCCCCCcccCCceeEEEeccCCCCCCCCceEEEEEeeeCCCCCeEEEEEeCCCCCCEEEcCCCcEEEecc-CCCCcceE
Q psy4697         134 NVNDWDPRFRYPQYELFLPHIPLADLTPGSVIGKVEAADGDKGDRVTLSLRGPYEKMFSINDSGHISIVDL-SALNTSTI  212 (383)
Q Consensus       134 DvNDn~P~f~~~~~~~~v~~~~~e~~~~g~~v~~v~A~D~D~g~~i~ysi~~~~~~~F~i~~tG~i~l~~~-~~~~~~~y  212 (383)
                      |+|++.|.|.+..|.+.|+    |+..+|+.|++|.|+|.|.+.++.|++.  ....|.|+++|.|++.+. +++ ...|
T Consensus         5 ~~~~c~P~F~~~~Y~~~V~----E~~~~Gt~v~~V~a~D~d~~~~~~y~~~--~~~~F~i~~~G~I~~~~~ld~e-~~~y   77 (136)
T d1op4a_           5 EIALCKTGFPEDVYSAVLP----KDVHEGQPLLNVKFSNCNRKRKVQYESS--EPADFKVDEDGTVYAVRSFPLT-AEQA   77 (136)
T ss_dssp             CCCCCCCBCCSCEEEECCC----CSSCSSCCEEECCCBCCSSCCCEEEECC--CSSEEEEETTTEEEEESCCSCS-SSCE
T ss_pred             CCCCccceecCCeEEEEEE----CCCCCCCEEEEeEeecCCccccceeccc--cceeeeccccEEEEEecccCcc-cceE
Confidence            7899999999999999999    9999999999999999998889999985  335799999999998765 444 4579


Q ss_pred             EEEEEEeeCCCCCceeEEEEEEEEeCCcccCccccc
Q psy4697         213 QLVVVATDTGNPPRQASVPAIMHFPEAIVQQASSKL  248 (383)
Q Consensus       213 ~L~V~a~D~g~p~~sst~tv~I~v~~~~~~~~p~~~  248 (383)
                      .|.|.|+|+|.|.+ +.++|+|.+ .+.+++.|.+.
T Consensus        78 ~l~V~A~D~g~~~~-~~t~V~i~v-~d~nd~~p~~~  111 (136)
T d1op4a_          78 KFLIYAQDKETQEK-WQVAVNLSR-EPTLTEEPMKE  111 (136)
T ss_dssp             EEEEEEEETTTTEE-EEEEEEECC-CCCCCCCCSSC
T ss_pred             EEEEEEEecCCcce-eeeEEEEEE-cccCCCCCccc
Confidence            99999999998764 566788777 56666666553

>d1l3wa3 b.1.6.1 (A:214-326) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=99.51  E-value=3.1e-14  Score=113.43  Aligned_cols=98  Identities=16%  Similarity=0.253  Sum_probs=81.7

Q ss_pred             cCCCCCcccCCceeEEEeccCCCCCCCCceEEEEEeeeCCCCC----eEEEEEeCCCCCCEEEc----C-CCcEEEec-c
Q psy4697         135 VNDWDPRFRYPQYELFLPHIPLADLTPGSVIGKVEAADGDKGD----RVTLSLRGPYEKMFSIN----D-SGHISIVD-L  204 (383)
Q Consensus       135 vNDn~P~f~~~~~~~~v~~~~~e~~~~g~~v~~v~A~D~D~g~----~i~ysi~~~~~~~F~i~----~-tG~i~l~~-~  204 (383)
                      .|||+|+|..+.|.+.|+    |+ .+|+.|+++.|+|+|.+.    .+.|.+.++....|.|.    . +|.|.+.. +
T Consensus         1 aNDn~P~F~~~~y~~~v~----En-~~g~~v~~v~A~D~D~~~~~~~~~~~~~~~~~~~~f~i~~~~~~~~g~i~~~~~l   75 (113)
T d1l3wa3           1 ANDNAPIFDPKTYTALVP----EN-EIGFEVQRLSVTDLDMPGTPAWQAVYKIRVNEGGFFNITTDPESNQGILTTAKGL   75 (113)
T ss_dssp             CCCCCCCBSCSEEEEEEE----SS-SCCCEEEEECBCCCSCTTSTTSCEECCBSCCTTSCEEEEECTTTCCEEEEESSCC
T ss_pred             CCCCCCEeCCCeEEEEEE----CC-CCCCEEEEEEEEccccCCcceeEEEEeeccccccceEEEeecCCCceEEEeeeec
Confidence            499999999999999999    88 579999999999999864    34455556777889884    2 56776655 4


Q ss_pred             CCCCcceEEEEEEEeeC---CCCCceeEEEEEEEEe
Q psy4697         205 SALNTSTIQLVVVATDT---GNPPRQASVPAIMHFP  237 (383)
Q Consensus       205 ~~~~~~~y~L~V~a~D~---g~p~~sst~tv~I~v~  237 (383)
                      +++....|.|.|.|+|.   |.|+++++++|+|.|.
T Consensus        76 D~E~~~~y~l~V~a~D~~~~~~~~~~s~~~V~I~V~  111 (113)
T d1l3wa3          76 DFELRKQYVLQITVENAEPFSVPLPTSTATVTVTVE  111 (113)
T ss_dssp             CCSSCCCEEEEECCEESSCCSSCCCCCCEEEEEEEE
T ss_pred             ccccCCEEEEEEEEEECCCCCCCceEeEEEEEEEEE
Confidence            77888999999999997   6789999999999984

>d1ncia_ b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: N-cadherin (neural)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.40  E-value=5.3e-13  Score=104.81  Aligned_cols=83  Identities=18%  Similarity=0.243  Sum_probs=68.9

Q ss_pred             EEEEECCCCCCcEEEEEEeEeCCC---CeeEEEEec-----CCCCCEEEcC-cccEEEcccCCcccCcEEEEEEEEecCC
Q psy4697          51 SVSALENLPVNYVLLTVTTNKPRD---LRVKYWLSN-----DYGERFSISR-QGDISLMQCLDYETEDSYRFTVYATDTL  121 (383)
Q Consensus        51 ~~~V~En~~~gt~v~~v~A~D~D~---~~v~Ysi~~-----~~~~~F~Id~-tG~I~~~~~LD~E~~~~y~~~V~A~D~~  121 (383)
                      .++|+||.+ |..+..+.+.|.|.   +.+.|+|.+     +..++|.||+ +|.|+++++||||....|.|.|.|+|.+
T Consensus         8 ~v~V~EN~~-~~~~~~i~~~d~D~~~n~~v~Y~i~~~~~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~V~A~D~g   86 (102)
T d1ncia_           8 PINLPENSR-GPFPQELVRIRSGRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLDRELIARFHLRAHAVDIN   86 (102)
T ss_dssp             CEEEETTCC-CCSSEEEEECCBGGGGTSCCEEEEESBTTTBSSTTSEEECTTTCEEEECSCCCTTTCSEEEEEEEEECTT
T ss_pred             CEEEeCCCC-CCEeEEEEEEeCCCCCCceEEEEEecCCCCCCcccceeccCCCCcEEEeeecchhcCcceEEEEEEEECC
Confidence            367999987 44455666666653   889999975     3456899997 9999999999999999999999999965


Q ss_pred             ---ceeEEEEEEEEee
Q psy4697         122 ---MTTSATVNISVVN  134 (383)
Q Consensus       122 ---~~s~~tV~I~V~D  134 (383)
                         ++++++|.|+|+|
T Consensus        87 ~~~~~~~~~v~I~V~D  102 (102)
T d1ncia_          87 GNQVENPIDIVINVID  102 (102)
T ss_dssp             SCBSSCCEEEEEEEEC
T ss_pred             CCceeeeEEEEEEEeC
Confidence               6788999999987

>d1l3wa1 b.1.6.1 (A:1-100) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=99.37  E-value=1.4e-12  Score=101.94  Aligned_cols=83  Identities=19%  Similarity=0.215  Sum_probs=68.6

Q ss_pred             EEEEECCCCCCcEEEEEEeEeCCC---CeeEEEEecC-----CCCCEEEcC-cccEEEcccCCcccCcEEEEEEEEecCC
Q psy4697          51 SVSALENLPVNYVLLTVTTNKPRD---LRVKYWLSND-----YGERFSISR-QGDISLMQCLDYETEDSYRFTVYATDTL  121 (383)
Q Consensus        51 ~~~V~En~~~gt~v~~v~A~D~D~---~~v~Ysi~~~-----~~~~F~Id~-tG~I~~~~~LD~E~~~~y~~~V~A~D~~  121 (383)
                      .++|+||.+ |.....+.+.|.|.   +.++|+|.+.     +.++|.|++ +|.|++.++||||..+.|.|+|.|+|.|
T Consensus         6 ~i~v~EN~~-~~~~~~v~~~~~D~~~n~~i~Y~i~~~~~~~~~~~~F~Id~~tG~I~~~~~lDrE~~~~y~l~V~a~D~g   84 (100)
T d1l3wa1           6 PIKVSENER-GPFPKRLVQIKSNKDRFNKVYYSITGQGADNPPQGVFRIEWETGWMLVTRPLDREEYDKYVLSSHAVSEN   84 (100)
T ss_dssp             CEEEESSCC-SSSCEEEEECCCSGGGSSCEEEEEEEBTTTBSSTTSEEECTTTCEEEECSCCCTTTCCEEEEEEEEEESS
T ss_pred             CEEEeCCCC-CCCCEEEEEEECCCCCCCcEEEEEEeCCCCCCccccEEEeCCCCEEEEeeecccccCCEEEEEEEEEECC
Confidence            367999974 54455666666653   8899999862     345799997 9999999999999999999999999975


Q ss_pred             ---ceeEEEEEEEEee
Q psy4697         122 ---MTTSATVNISVVN  134 (383)
Q Consensus       122 ---~~s~~tV~I~V~D  134 (383)
                         +++.++|.|+|+|
T Consensus        85 ~~~~~~~~~v~I~V~D  100 (100)
T d1l3wa1          85 GSPVEEPMEITINVID  100 (100)
T ss_dssp             SCBCSCCEEEEEEEEC
T ss_pred             CCcEEeEEEEEEEEeC
Confidence               7889999999987

>d1l3wa5 b.1.6.1 (A:434-540) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=99.28  E-value=9.2e-13  Score=104.06  Aligned_cols=97  Identities=15%  Similarity=0.124  Sum_probs=71.4

Q ss_pred             CCCCCcccCCceeEEEeccCCCCCCCCceEEEEEeeeCCCCC---eEEEEEeCCCCCCEEEc-C-CCcEE-EeccCCCCc
Q psy4697         136 NDWDPRFRYPQYELFLPHIPLADLTPGSVIGKVEAADGDKGD---RVTLSLRGPYEKMFSIN-D-SGHIS-IVDLSALNT  209 (383)
Q Consensus       136 NDn~P~f~~~~~~~~v~~~~~e~~~~g~~v~~v~A~D~D~g~---~i~ysi~~~~~~~F~i~-~-tG~i~-l~~~~~~~~  209 (383)
                      |||+|+|.+.  ...|+    |+.+.+.   .|.|+|+|.|.   .++|+|.+.....|.+. . .|.+. +..++++..
T Consensus         1 NDNaP~f~~~--~~~v~----e~~~~~~---~v~AtD~D~~~n~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ld~e~~   71 (107)
T d1l3wa5           1 NDNGPVPSPR--VFTMC----DQNPEPQ---VLTISDADIPPNTYPYKVSLSHGSDLTWKAELDSKGTSMLLSPTQQLKK   71 (107)
T ss_dssp             CCSCCCBSCC--CEEEC----SSSCCCE---EEEBCCSSCTTTTCCCCCBCCSCSSSSCBCCBCTTSSEEEEBCSSCCCS
T ss_pred             CCCCCccCCC--EEEEE----ecCCCce---eEEEEcCccCccceeEeeeeecccccccccccccceeeeeeeccccccc
Confidence            8999999864  55688    7776654   47899999874   58899986656566664 3 55444 444577888


Q ss_pred             ceEEEEEEEeeCCCCCceeEEEEEEEEeCCcccCc
Q psy4697         210 STIQLVVVATDTGNPPRQASVPAIMHFPEAIVQQA  244 (383)
Q Consensus       210 ~~y~L~V~a~D~g~p~~sst~tv~I~v~~~~~~~~  244 (383)
                      ..|.|.|.|+|+|.|+++++  ++|.|++. ++++
T Consensus        72 ~~y~l~V~a~D~G~p~~~~t--v~V~V~Dc-~dn~  103 (107)
T d1l3wa5          72 GDYSIYVLLSDAQNNPQLTV--VNATVCSC-EGKA  103 (107)
T ss_dssp             SCBCCEEECCSSSCCCEEEE--CCEEECSC-SSSC
T ss_pred             eeEEEEEEEEeCCCCceEEE--EEEEEEEe-eCCc
Confidence            99999999999999998765  66666443 4443

>d1l3wa1 b.1.6.1 (A:1-100) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=99.00  E-value=1.2e-09  Score=84.88  Aligned_cols=85  Identities=13%  Similarity=0.202  Sum_probs=69.2

Q ss_pred             EEEeccCCCCCCCCceEEEEEeeeCCCCC--eEEEEEeCC-----CCCCEEEcC-CCcEEEecc-CCCCcceEEEEEEEe
Q psy4697         149 LFLPHIPLADLTPGSVIGKVEAADGDKGD--RVTLSLRGP-----YEKMFSIND-SGHISIVDL-SALNTSTIQLVVVAT  219 (383)
Q Consensus       149 ~~v~~~~~e~~~~g~~v~~v~A~D~D~g~--~i~ysi~~~-----~~~~F~i~~-tG~i~l~~~-~~~~~~~y~L~V~a~  219 (383)
                      +.++    |+.+ |.....+.+.|.|.+.  .++|+|.+.     ..+.|.|++ +|.|++.+. +++....|.|.|.|+
T Consensus         7 i~v~----EN~~-~~~~~~v~~~~~D~~~n~~i~Y~i~~~~~~~~~~~~F~Id~~tG~I~~~~~lDrE~~~~y~l~V~a~   81 (100)
T d1l3wa1           7 IKVS----ENER-GPFPKRLVQIKSNKDRFNKVYYSITGQGADNPPQGVFRIEWETGWMLVTRPLDREEYDKYVLSSHAV   81 (100)
T ss_dssp             EEEE----SSCC-SSSCEEEEECCCSGGGSSCEEEEEEEBTTTBSSTTSEEECTTTCEEEECSCCCTTTCCEEEEEEEEE
T ss_pred             EEEe----CCCC-CCCCEEEEEEECCCCCCCcEEEEEEeCCCCCCccccEEEeCCCCEEEEeeecccccCCEEEEEEEEE
Confidence            5678    7764 5555678888888764  799999732     235799998 999998664 788899999999999


Q ss_pred             eCCCCCceeEEEEEEEEeC
Q psy4697         220 DTGNPPRQASVPAIMHFPE  238 (383)
Q Consensus       220 D~g~p~~sst~tv~I~v~~  238 (383)
                      |.|.|+++++++|+|+|.+
T Consensus        82 D~g~~~~~~~~~v~I~V~D  100 (100)
T d1l3wa1          82 SENGSPVEEPMEITINVID  100 (100)
T ss_dssp             ESSSCBCSCCEEEEEEEEC
T ss_pred             ECCCCcEEeEEEEEEEEeC
Confidence            9999999999999999853

>d1ncia_ b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: N-cadherin (neural)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.99  E-value=8.1e-10  Score=86.14  Aligned_cols=85  Identities=18%  Similarity=0.285  Sum_probs=69.6

Q ss_pred             eEEEeccCCCCCCCCceEEEEEeeeCCCCC--eEEEEEeC-----CCCCCEEEcC-CCcEEEecc-CCCCcceEEEEEEE
Q psy4697         148 ELFLPHIPLADLTPGSVIGKVEAADGDKGD--RVTLSLRG-----PYEKMFSIND-SGHISIVDL-SALNTSTIQLVVVA  218 (383)
Q Consensus       148 ~~~v~~~~~e~~~~g~~v~~v~A~D~D~g~--~i~ysi~~-----~~~~~F~i~~-tG~i~l~~~-~~~~~~~y~L~V~a  218 (383)
                      .+.|+    |+.. |.....+.+.|.|.+.  .+.|+|.+     +..++|.|++ +|.|++++. +++....|.|.|.|
T Consensus         8 ~v~V~----EN~~-~~~~~~i~~~d~D~~~n~~v~Y~i~~~~~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~V~A   82 (102)
T d1ncia_           8 PINLP----ENSR-GPFPQELVRIRSGRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLDRELIARFHLRAHA   82 (102)
T ss_dssp             CEEEE----TTCC-CCSSEEEEECCBGGGGTSCCEEEEESBTTTBSSTTSEEECTTTCEEEECSCCCTTTCSEEEEEEEE
T ss_pred             CEEEe----CCCC-CCEeEEEEEEeCCCCCCceEEEEEecCCCCCCcccceeccCCCCcEEEeeecchhcCcceEEEEEE
Confidence            45688    8876 4555667777877654  69999974     2346899998 999998764 78889999999999


Q ss_pred             eeCCCCCceeEEEEEEEEe
Q psy4697         219 TDTGNPPRQASVPAIMHFP  237 (383)
Q Consensus       219 ~D~g~p~~sst~tv~I~v~  237 (383)
                      +|.|.|+++++++|.|.|.
T Consensus        83 ~D~g~~~~~~~~~v~I~V~  101 (102)
T d1ncia_          83 VDINGNQVENPIDIVINVI  101 (102)
T ss_dssp             ECTTSCBSSCCEEEEEEEE
T ss_pred             EECCCCceeeeEEEEEEEe
Confidence            9999999999999999984

>d1u2ca1 b.1.6.2 (A:58-160) Dystroglycan, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Dystroglycan, N-terminal domain
domain: Dystroglycan, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=82.83  E-value=1.7  Score=31.78  Aligned_cols=68  Identities=9%  Similarity=-0.008  Sum_probs=43.2

Q ss_pred             EEEeeeCCCCCeEEEEEe---C-CCCCCEEEcC-CCcEEEeccCCCCcceEEEEEEEeeCCCCCc---eeEEEEEEEE
Q psy4697         167 KVEAADGDKGDRVTLSLR---G-PYEKMFSIND-SGHISIVDLSALNTSTIQLVVVATDTGNPPR---QASVPAIMHF  236 (383)
Q Consensus       167 ~v~A~D~D~g~~i~ysi~---~-~~~~~F~i~~-tG~i~l~~~~~~~~~~y~L~V~a~D~g~p~~---sst~tv~I~v  236 (383)
                      +|.+.+.| |+.++|++.   + +...|..+++ +|.+.-. +...+.+.|.+.|+|+|.+.-..   .+.-...|+|
T Consensus        22 ~ip~~~f~-~d~~t~~~~~~~g~~LPsWl~fd~~tg~~~Gt-P~~~~~G~~~i~vtAtD~~~~~s~~~~~~dvf~i~V   97 (103)
T d1u2ca1          22 SIPTDLIA-SSGEIIKVSAAGKEALPSWLHWDPHSHILEGL-PLDTDKGVHYISVSAARLGANGSHVPQTSSVFSIEV   97 (103)
T ss_dssp             ECCHHHHC-CTTEEEEEEETTSSSCCTTEEEETTTTEEEEC-CCGGGCEEEEEEEEEEEECTTSCEEEEEEEEEEEEE
T ss_pred             eCCCCCcC-CCccEEEEEecCCCCCCccEEEeccCCEEEEc-cCCCCceEEEEEEEEEeCCCCcccccEEEEEEEEEe
Confidence            44444444 566778875   1 2356888987 8888654 33455789999999999765332   2333345555

>d1u2ca1 b.1.6.2 (A:58-160) Dystroglycan, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Dystroglycan, N-terminal domain
domain: Dystroglycan, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=82.68  E-value=1.1  Score=32.94  Aligned_cols=67  Identities=9%  Similarity=-0.093  Sum_probs=41.6

Q ss_pred             eEeCCCCeeEEEEec----CCCCCEEEcC-cccEEEcccCCcccCcEEEEEEEEecCC-ceeEEEEEEEEeecCC
Q psy4697          69 TNKPRDLRVKYWLSN----DYGERFSISR-QGDISLMQCLDYETEDSYRFTVYATDTL-MTTSATVNISVVNVND  137 (383)
Q Consensus        69 A~D~D~~~v~Ysi~~----~~~~~F~Id~-tG~I~~~~~LD~E~~~~y~~~V~A~D~~-~~s~~tV~I~V~DvND  137 (383)
                      +.+.+...++|++..    .-..|..+|+ +|.+.-.-.  .+....|.+.|.|+|.+ ..+.....+.+..+|.
T Consensus        25 ~~~f~~d~~t~~~~~~~g~~LPsWl~fd~~tg~~~GtP~--~~~~G~~~i~vtAtD~~~~~s~~~~~~dvf~i~V   97 (103)
T d1u2ca1          25 TDLIASSGEIIKVSAAGKEALPSWLHWDPHSHILEGLPL--DTDKGVHYISVSAARLGANGSHVPQTSSVFSIEV   97 (103)
T ss_dssp             HHHHCCTTEEEEEEETTSSSCCTTEEEETTTTEEEECCC--GGGCEEEEEEEEEEEECTTSCEEEEEEEEEEEEE
T ss_pred             CCCcCCCccEEEEEecCCCCCCccEEEeccCCEEEEccC--CCCceEEEEEEEEEeCCCCcccccEEEEEEEEEe
Confidence            333333456777753    2357999996 898876433  34467899999999953 4444444444444443