Psyllid ID: psy46

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660

EVRQLECLCKQLYESADGNLRVEAEKALVNFQNAPDTLAKCQLLLDRGDSSYAQAIAANTLTKLISRPAQGLSLQQRIDIPQGLSLQQRIDIRNYILNYLATRPKLPNFVIQALVTLFARITKLGWFDSEKDEFVFRNVIQDVSNFLQGSVEHCIIGVQILSQLTGEMNQISEADAARSLTKHRKIASSYRDIQLFDIFRLSCSLLSNAQENCKTMTLEGEGQIFMTQLLGLAQNCLTFDFIGTATDESSDDLCTVQIPTSWRPAFLDPNTLKLFFNLYHSLPSTLSHLALACLVQIASVRRSLFSNAERARFLTQLVNGVKQILQNPQGLSDANNYHEFCRLLARLKSNYQLGELVMVDNYSEAIQLIAKFTVESLQMWQFAPNSVHYLLSLWQRMVASVPYIKAMEPHQLHTYTPEVTSAYITSRLDSVAVVIRDNLEDPLDDLGMVSQQLEQLSAIGRCEYQKTCSLLVQLFDQSARLYQELISTPSPNQIDIAIQEGRLTWLVYIIGAAVGGRVSFNSNEDHDAMDGELLVCRVLQLMNLTDPRLLGPGPGCEKLELAMLSFFEQFRKIYVGDQVQKNSKVYRRLNEVLGLCDEATVLSVFVRKIITNLKYWGRSEQIITKTLQLLNDLSVGYSCVRKLVKLDEVQFMLNNHTVSL

cHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccccccHHHcccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHcccccHHHccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHccHHHHHHccccccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccccHHHHHcccHHHHHHHHcccccc

cHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccccccHHHccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccEcccHcHHHHHcccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHcccHHHHHccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHcHHHHcHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcHHHHHHHHcHHHHHHHHHcccccc

EVRQLECLCKQLYESADGNLRVEAEKALVNFQNAPDTLAKCQLLLDRGDSSYAQAIAANTLTKLisrpaqglslqqridipqglslqQRIDIRNYILNYLatrpklpnFVIQALVTLFARITklgwfdsekdeFVFRNVIQDVSNFLQGSVEHCIIGVQILSQLTGEMNQISEADAARSLTKHRKIASSYRDIQLFDIFRLSCSLLSNAQENCKTMTLEGEGQIFMTQLLGLaqncltfdfigtatdessddlctvqiptswrpafldpntLKLFFNLYHSLPSTLSHLALACLVQIASVRRSLFSNAERARFLTQLVNGVKQIlqnpqglsdanNYHEFCRLLARLKSNYQLGELVMVDNYSEAIQLIAKFTVESLQMWQFAPNSVHYLLSLWQRMVASVPyikamephqlhtytpevtSAYITSRLDSVAVVIRDnledplddlGMVSQQLEQLSAIGRCEYQKTCSLLVQLFDQSARLYQEListpspnqidIAIQEGRLTWLVYIIGAAVggrvsfnsnedhdamdGELLVCRVLQLmnltdprllgpgpgcEKLELAMLSFFEQFRKIYVGDQVQKNSKVYRRLNEVLGLCDEATVLSVFVRKIITNLKYWGRSEQIITKTLQLLNDLSVGYSCVRKLVKLDEVQFMLNNHTVSL

EVRQLECLCKQLYESADGNLRVEAEKALVNFQNAPDTLAKCQLLLDRGDSSYAQAIAANTLTKLISRPAQGLSLQQRIDIPQGLSLQQRIDIRNYILNYLATRPKLPNFVIQALVTLFARITKLGWFDSEKDEFVFRNVIQDVSNFLQGSVEHCIIGVQILSQLTGEMNQISEADAARSLTKHRKIASSYRDIQLFDIFRLSCSLLSNAQENCKTMTLEGEGQIFMTQLLGLAQNCLTFDFIGTATDESSDDLCTVQIPTSWRPAFLDPNTLKLFFNLYHSLPSTLSHLALACLVQIASVRRSLFSNAERARFLTQLVNGVKQILQNPQGLSDANNYHEFCRLLARLKSNYQLGELVMVDNYSEAIQLIAKFTVESLQMWQFAPNSVHYLLSLWQRMVASVPYIKAMEPHQLHTYTPEVTSAYITSRLDSVAVVIRDNLEDPLDDLGMVSQQLEQLSAIGRCEYQKTCSLLVQLFDQSARLYQELISTPSPNQIDIAIQEGRLTWLVYIIGAAVGGRVSFNSNEDHDAMDGELLVCRVLQLMNLTDPRLLGPGPGCEKLELAMLSFFEQFRKIYvgdqvqknSKVYRRLNEvlglcdeatvlSVFVRKIITnlkywgrseQIITKTLQLLNDLSVGYSCVRKLVKLDEVQFMLNNHTVSL

****LECLCKQLYESADGNLRVEAEKALVNFQNAPDTLAKCQLLLDRGDSSYAQAIAANTLTKLISRPAQGLSLQQRIDIPQGLSLQQRIDIRNYILNYLATRPKLPNFVIQALVTLFARITKLGWFDSEKDEFVFRNVIQDVSNFLQGSVEHCIIGVQILSQLTGEMN***********TKHRKIASSYRDIQLFDIFRLSCSLLSNAQENCKTMTLEGEGQIFMTQLLGLAQNCLTFDFIGTATDESSDDLCTVQIPTSWRPAFLDPNTLKLFFNLYHSLPSTLSHLALACLVQIASVRRSLFSNAERARFLTQLVNGVKQILQNPQGLSDANNYHEFCRLLARLKSNYQLGELVMVDNYSEAIQLIAKFTVESLQMWQFAPNSVHYLLSLWQRMVASVPYIKAMEPHQLHTYTPEVTSAYITSRLDSVAVVIRDNLEDPLDDLGMVSQQLEQLSAIGRCEYQKTCSLLVQLFDQSARLYQELISTPSPNQIDIAIQEGRLTWLVYIIGAAVGGRVSFNSNEDHDAMDGELLVCRVLQLMNLTDPRLLGPGPGCEKLELAMLSFFEQFRKIYVGDQVQKNSKVYRRLNEVLGLCDEATVLSVFVRKIITNLKYWGRSEQIITKTLQLLNDLSVGYSCVRKLVKLDEVQFMLN******

EVRQLECLCKQLYE***********KALVNFQNAPDTLAKCQLLLDRGDSSYAQAIAANTLTKLISRPAQGLSLQQRIDIPQGLSLQQRIDIRNYILNYLATRPKLPNFVIQALVTLFARITKLGWFDSEKDEFVFRNVIQDVSNFLQGSVEHCIIGVQILSQLTGEMNQISEADAARSLTKHRKIASSYRDIQLFDIFRLSCSLLSNAQENCK***LEGEGQIFMTQLLGLAQNCLTFDFIGTATDESSDDLCTVQIPTSWRPAFLDPNTLKLFFNLYHSLPSTLSHLALACLVQIASVRRSLFSNAERARFLTQLVNGVKQILQNPQGLSDANNYHEFCRLLARLKSNYQLGELVMVDNYSEAIQLIAKFTVESLQMWQFAPNSVHYLLSLWQRMVASV********HQLHTYTPEVTSAYITSRLDSV****RDNLEDPLDDLGMVSQQLEQLSAIGRCEYQKTCSLLVQLFDQSAR*****************IQEGRLTWLVYIIGAAVGG**************GELLVCRVLQLMNLT*************LELAMLSFFEQFRKIYVGDQVQKNSKVYR*****LGLCDEATVLSVFVRKIITNLKYWGRSEQIITKTLQLLNDLSVGYSCVRKLVKLDEVQFMLNNH****

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		660	2.2.26 [Sep-21-2011]
Q5ZLT0		1087	Exportin-7 OS=Gallus gall	yes	N/A	0.960	0.583	0.717	0.0
Q9UIA9		1087	Exportin-7 OS=Homo sapien	yes	N/A	0.960	0.583	0.714	0.0
Q5R9G4		1087	Exportin-7 OS=Pongo abeli	yes	N/A	0.960	0.583	0.712	0.0
Q9EPK7		1087	Exportin-7 OS=Mus musculu	yes	N/A	0.960	0.583	0.711	0.0
Q569Z2		1087	Exportin-7-B OS=Xenopus l	N/A	N/A	0.962	0.584	0.700	0.0
Q704U0		1087	Exportin-7-A OS=Xenopus l	N/A	N/A	0.960	0.583	0.699	0.0
Q9GQN0		1098	Ran-binding protein 16 OS	yes	N/A	0.965	0.580	0.635	0.0
Q9H2T7		1088	Ran-binding protein 17 OS	no	N/A	0.946	0.574	0.603	0.0
Q99NF8		1088	Ran-binding protein 17 OS	no	N/A	0.956	0.579	0.604	0.0
Q54DN3		1007	Exportin-7 OS=Dictyosteli	yes	N/A	0.796	0.522	0.337	2e-83

>sp\|Q5ZLT0\|XPO7_CHICK Exportin-7 OS=Gallus gallus GN=XPO7 PE=2 SV=1	Back alignment and function desciption

 Score =  947 bits (2448), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 470/655 (71%), Positives = 536/655 (81%), Gaps = 21/655 (3%)

Query: 4   QLECLCKQLYESADGNLRVEAEKALVNFQNAPDTLAKCQLLLDRGDSSYAQAIAANTLTK 63
           QLE LCKQLYE+ D   R++AEKALV F N+PD L+KCQLLL+RG SSY+Q +AA  LTK
Sbjct: 10  QLENLCKQLYETTDTATRLQAEKALVEFTNSPDCLSKCQLLLERGSSSYSQLLAATCLTK 69

Query: 64  LISRPAQGLSLQQRIDIPQGLSLQQRIDIRNYILNYLATRPKLPNFVIQALVTLFARITK 123
           L+SR    L L+QRIDI            RNY+LNYLATRPKL  FV QAL+ L+ARITK
Sbjct: 70  LVSRTNNPLPLEQRIDI------------RNYVLNYLATRPKLATFVTQALIQLYARITK 117

Query: 124 LGWFDSEKDEFVFRNVIQDVSNFLQGSVEHCIIGVQILSQLTGEMNQISEADAARSLTKH 183
           LGWFD +KDE+VFRNVI DV+ FLQ SVEHCIIGV ILSQLT E+NQ   AD    LTKH
Sbjct: 118 LGWFDCQKDEYVFRNVITDVTRFLQDSVEHCIIGVTILSQLTNEINQ---ADTTHPLTKH 174

Query: 184 RKIASSYRDIQLFDIFRLSCSLLSNAQENCKTMTLEGEGQI-FMTQLLGLAQNCLTFDFI 242
           RKIASS+RD  LFDIF LSC+LL   Q + K + L  E Q   + QLL L  NCL FDFI
Sbjct: 175 RKIASSFRDSSLFDIFTLSCNLLK--QASGKNLNLNDESQHGLLMQLLKLTHNCLNFDFI 232

Query: 243 GTATDESSDDLCTVQIPTSWRPAFLDPNTLKLFFNLYHSLPSTLSHLALACLVQIASVRR 302
           GT+TDESSDDLCTVQIPTSWR AFLD +TL+LFF+LYHS+P + S L L+CLVQIASVRR
Sbjct: 233 GTSTDESSDDLCTVQIPTSWRSAFLDSSTLQLFFDLYHSIPPSFSPLVLSCLVQIASVRR 292

Query: 303 SLFSNAERARFLTQLVNGVKQILQNPQGLSDANNYHEFCRLLARLKSNYQLGELVMVDNY 362
           SLF+NAERA+FL+ LV+GVK+IL+NPQ LSD NNYHEFCRLLARLKSNYQLGELV V+NY
Sbjct: 293 SLFNNAERAKFLSHLVDGVKRILENPQSLSDPNNYHEFCRLLARLKSNYQLGELVKVENY 352

Query: 363 SEAIQLIAKFTVESLQMWQFAPNSVHYLLSLWQRMVASVPYIKAMEPHQLHTYTPEVTSA 422
            E I+LIA FTV SLQ W+FAPNSVHYLLSLWQR+ ASVPY+KA EPH L TYTPEVT A
Sbjct: 353 PEVIRLIANFTVTSLQHWEFAPNSVHYLLSLWQRLAASVPYVKATEPHMLETYTPEVTKA 412

Query: 423 YITSRLDSVAVVIRDNLEDPLDDLGMVSQQLEQLSAIGRCEYQKTCSLLVQLFDQSARLY 482
           YITSRL+SV +++RD LEDPLDD G+V QQL+QLS IGRCEY+KTC+LLVQLFDQSA+ Y
Sbjct: 413 YITSRLESVHIILRDGLEDPLDDTGLVQQQLDQLSTIGRCEYEKTCALLVQLFDQSAQSY 472

Query: 483 QELISTPSPNQIDIAIQEGRLTWLVYIIGAAVGGRVSFNSNEDHDAMDGELLVCRVLQLM 542
           QEL+ + + + +D+A+QEGRLTWLVYIIGA +GGRVSF S ++ DAMDGE LVCRVLQLM
Sbjct: 473 QELLQSATASPMDVAVQEGRLTWLVYIIGAVIGGRVSFASTDEQDAMDGE-LVCRVLQLM 531

Query: 543 NLTDPRLLGPGPGCEKLELAMLSFFEQFRKIYVGDQVQKNSKVYRRLNEVLGLCDEATVL 602
           NLTD RL     G EKLELAMLSFFEQFRKIY+GDQVQK+SK+YRRL+EVLGL DE  VL
Sbjct: 532 NLTDSRL--AQAGNEKLELAMLSFFEQFRKIYIGDQVQKSSKLYRRLSEVLGLNDETMVL 589

Query: 603 SVFVRKIITNLKYWGRSEQIITKTLQLLNDLSVGYSCVRKLVKLDEVQFMLNNHT 657
           SVF+ KIITNLKYWGR E I +KTLQLLNDLS+GYS VRKLVKL  VQFMLNNHT
Sbjct: 590 SVFIGKIITNLKYWGRCEPITSKTLQLLNDLSIGYSSVRKLVKLSAVQFMLNNHT 644

Mediates the nuclear export of proteins (cargos) with broad substrate specificity.
Gallus gallus (taxid: 9031)

>sp\|Q9UIA9\|XPO7_HUMAN Exportin-7 OS=Homo sapiens GN=XPO7 PE=1 SV=3	Back alignment and function description

>sp\|Q5R9G4\|XPO7_PONAB Exportin-7 OS=Pongo abelii GN=XPO7 PE=2 SV=3	Back alignment and function description

>sp\|Q9EPK7\|XPO7_MOUSE Exportin-7 OS=Mus musculus GN=Xpo7 PE=2 SV=3	Back alignment and function description

>sp\|Q569Z2\|XPO7B_XENLA Exportin-7-B OS=Xenopus laevis GN=xpo7-b PE=2 SV=1	Back alignment and function description

>sp\|Q704U0\|XPO7A_XENLA Exportin-7-A OS=Xenopus laevis GN=xpo7-a PE=1 SV=1	Back alignment and function description

>sp\|Q9GQN0\|RBP16_DROME Ran-binding protein 16 OS=Drosophila melanogaster GN=Ranbp16 PE=2 SV=1	Back alignment and function description

>sp\|Q9H2T7\|RBP17_HUMAN Ran-binding protein 17 OS=Homo sapiens GN=RANBP17 PE=2 SV=1	Back alignment and function description

>sp\|Q99NF8\|RBP17_MOUSE Ran-binding protein 17 OS=Mus musculus GN=Ranbp17 PE=2 SV=1	Back alignment and function description

>sp\|Q54DN3\|XPO7_DICDI Exportin-7 OS=Dictyostelium discoideum GN=xpo7 PE=3 SV=2	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		660
156538465		1100	PREDICTED: exportin-7-like isoform 1 [Na	0.972	0.583	0.830	0.0
270002549		1099	hypothetical protein TcasGA2_TC004857 [T	0.972	0.584	0.810	0.0
189234165		1128	PREDICTED: similar to exportin 7 [Tribol	0.972	0.569	0.810	0.0
332018484		1101	Exportin-7 [Acromyrmex echinatior]	0.980	0.587	0.798	0.0
307203813		945	Exportin-7 [Harpegnathos saltator]	0.972	0.679	0.795	0.0
328783491		1100	PREDICTED: exportin-7 [Apis mellifera]	0.971	0.582	0.771	0.0
380024615		1100	PREDICTED: LOW QUALITY PROTEIN: exportin	0.971	0.582	0.771	0.0
383866310		1095	PREDICTED: exportin-7-like [Megachile ro	0.971	0.585	0.762	0.0
340725844		1096	PREDICTED: exportin-7-like [Bombus terre	0.965	0.581	0.753	0.0
242013434		1144	Exportin-7, putative [Pediculus humanus	0.951	0.548	0.749	0.0

>gi\|156538465\|ref\|XP_001606586.1\| PREDICTED: exportin-7-like isoform 1 [Nasonia vitripennis] gi\|345491581\|ref\|XP_003426649.1\| PREDICTED: exportin-7-like isoform 2 [Nasonia vitripennis]	Back alignment and taxonomy information

 Score = 1106 bits (2860), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 548/660 (83%), Positives = 591/660 (89%), Gaps = 18/660 (2%)

Query: 1   EVRQLECLCKQLYESADGNLRVEAEKALVNFQNAPDTLAKCQLLLDRGDSSYAQAIAANT 60
           EVRQLE LCKQLYES D   R EAEKALVNFQNAPDTL KCQ+LLDRGDS+YAQ +AA T
Sbjct: 6   EVRQLELLCKQLYESQDSAHRAEAEKALVNFQNAPDTLTKCQMLLDRGDSAYAQLLAATT 65

Query: 61  LTKLISRPAQGLSLQQRIDIPQGLSLQQRIDIRNYILNYLATRPKLPNFVIQALVTLFAR 120
           LTKL+SR AQGLSLQQR+            DIRNY+LNYLAT+PKLPNFVIQALVTLFAR
Sbjct: 66  LTKLVSRSAQGLSLQQRL------------DIRNYVLNYLATQPKLPNFVIQALVTLFAR 113

Query: 121 ITKLGWFDSEKDEFVFRNVIQDVSNFLQGSVEHCIIGVQILSQLTGEMNQISEADAARSL 180
           I+KLGWFDS+KDEFVFRNV+ DVS FLQGSVEHC+IGVQ+LSQLT EMNQISEADA RSL
Sbjct: 114 ISKLGWFDSDKDEFVFRNVVSDVSKFLQGSVEHCMIGVQLLSQLTCEMNQISEADANRSL 173

Query: 181 TKHRKIASSYRDIQLFDIFRLSCSLLSNAQENCKTMTLEGEGQI-FMTQLLGLAQNCLTF 239
           TKHRKIASS+RD QLF+IFRLSCSLL  A+ENCK +    E Q   MTQLL LAQNCLTF
Sbjct: 174 TKHRKIASSFRDTQLFEIFRLSCSLLGTARENCKNLNFNDEAQHGLMTQLLRLAQNCLTF 233

Query: 240 DFIGTATDESSDDLCTVQIPTSWRPAFLDPNTLKLFFNLYHSLPSTLSHLALACLVQIAS 299
           DFIGT+TDESSDDLCTVQIPTSWRPAFLD  TLKLFF+LYHSLP+TLS LAL+CLVQIAS
Sbjct: 234 DFIGTSTDESSDDLCTVQIPTSWRPAFLDFATLKLFFDLYHSLPNTLSSLALSCLVQIAS 293

Query: 300 VRRSLFSNAERARFLTQLVNGVKQILQNPQGLSDANNYHEFCRLLARLKSNYQLGELVMV 359
           VRRSLFSN ERA+FLT LVNGVK  LQNPQGLSD  NYHEFCRLLARLKSNYQLGELVMV
Sbjct: 294 VRRSLFSNTERAKFLTHLVNGVKHTLQNPQGLSDPGNYHEFCRLLARLKSNYQLGELVMV 353

Query: 360 DNYSEAIQLIAKFTVESLQMWQFAPNSVHYLLSLWQRMVASVPYIKAMEPHQLHTYTPEV 419
           +NY EAIQLIAKFTV+SLQMWQFAPNSVHYLLSLWQRMVASVPY+KA EPH L TYTPEV
Sbjct: 354 ENYPEAIQLIAKFTVQSLQMWQFAPNSVHYLLSLWQRMVASVPYVKATEPHLLETYTPEV 413

Query: 420 TSAYITSRLDSVAVVIRDNLEDPLDDLGMVSQQLEQLSAIGRCEYQKTCSLLVQLFDQSA 479
           ++AYITSRL+SVAVV+R+ LEDPLDDLGMV QQLEQLS IGRCEYQKTC+LLV LFDQ+A
Sbjct: 414 SNAYITSRLESVAVVVREGLEDPLDDLGMVQQQLEQLSVIGRCEYQKTCTLLVNLFDQAA 473

Query: 480 RLYQELIS-TPSPN-QIDIAIQEGRLTWLVYIIGAAVGGRVSFNSNEDHDAMDGELLVCR 537
           R YQEL++ T SP  QIDI IQEG+LTWLVYIIG+A+GGRVSFNSNE+HDAMDGE LVCR
Sbjct: 474 RTYQELMTQTASPTQQIDILIQEGQLTWLVYIIGSAIGGRVSFNSNEEHDAMDGE-LVCR 532

Query: 538 VLQLMNLTDPRLLGPGPGCEKLELAMLSFFEQFRKIYVGDQVQKNSKVYRRLNEVLGLCD 597
           VLQLMNLTD R LG G GCEKLELAMLSFFEQFRKIYVGDQVQKNSKVYRRL++VLGL D
Sbjct: 533 VLQLMNLTDSR-LGQG-GCEKLELAMLSFFEQFRKIYVGDQVQKNSKVYRRLSDVLGLSD 590

Query: 598 EATVLSVFVRKIITNLKYWGRSEQIITKTLQLLNDLSVGYSCVRKLVKLDEVQFMLNNHT 657
           EA VLSVF+RKIITNLKYWGRSEQII+KTLQLLNDLSVGY+CVRKLVKL+EVQFMLNNHT
Sbjct: 591 EAMVLSVFIRKIITNLKYWGRSEQIISKTLQLLNDLSVGYTCVRKLVKLEEVQFMLNNHT 650

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi\|270002549\|gb\|EEZ98996.1\| hypothetical protein TcasGA2_TC004857 [Tribolium castaneum]	Back alignment and taxonomy information

>gi\|189234165\|ref\|XP_967312.2\| PREDICTED: similar to exportin 7 [Tribolium castaneum]	Back alignment and taxonomy information

>gi\|332018484\|gb\|EGI59074.1\| Exportin-7 [Acromyrmex echinatior]	Back alignment and taxonomy information

>gi\|307203813\|gb\|EFN82749.1\| Exportin-7 [Harpegnathos saltator]	Back alignment and taxonomy information

>gi\|328783491\|ref\|XP_397078.3\| PREDICTED: exportin-7 [Apis mellifera]	Back alignment and taxonomy information

>gi\|380024615\|ref\|XP_003696089.1\| PREDICTED: LOW QUALITY PROTEIN: exportin-7-like [Apis florea]	Back alignment and taxonomy information

>gi\|383866310\|ref\|XP_003708613.1\| PREDICTED: exportin-7-like [Megachile rotundata]	Back alignment and taxonomy information

>gi\|340725844\|ref\|XP_003401275.1\| PREDICTED: exportin-7-like [Bombus terrestris] gi\|350397050\|ref\|XP_003484753.1\| PREDICTED: exportin-7-like [Bombus impatiens]	Back alignment and taxonomy information

>gi\|242013434\|ref\|XP_002427412.1\| Exportin-7, putative [Pediculus humanus corporis] gi\|212511789\|gb\|EEB14674.1\| Exportin-7, putative [Pediculus humanus corporis]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		660
ZFIN\|ZDB-GENE-060628-2		1090	xpo7 "exportin 7" [Danio rerio	0.965	0.584	0.719	8.6e-246
UNIPROTKB\|Q5ZLT0		1087	XPO7 "Exportin-7" [Gallus gall	0.960	0.583	0.719	2.6e-244
UNIPROTKB\|F1NFR4		1092	XPO7 "Exportin-7" [Gallus gall	0.960	0.580	0.717	8.9e-244
UNIPROTKB\|J9P0Z1		984	XPO7 "Uncharacterized protein"	0.965	0.647	0.712	8.9e-244
UNIPROTKB\|E9PEN8		1096	XPO7 "Exportin-7" [Homo sapien	0.965	0.581	0.712	8.9e-244
UNIPROTKB\|A1A4I8		1087	XPO7 "Uncharacterized protein"	0.960	0.583	0.716	3.8e-243
UNIPROTKB\|E2RH14		1087	XPO7 "Uncharacterized protein"	0.960	0.583	0.716	3.8e-243
UNIPROTKB\|E7ESC6		1088	XPO7 "Exportin-7" [Homo sapien	0.960	0.582	0.716	3.8e-243
UNIPROTKB\|Q9UIA9		1087	XPO7 "Exportin-7" [Homo sapien	0.960	0.583	0.716	3.8e-243
MGI\|MGI:1929705		1087	Xpo7 "exportin 7" [Mus musculu	0.960	0.583	0.712	1e-242

ZFIN\|ZDB-GENE-060628-2 xpo7 "exportin 7" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

 Score = 2368 (838.6 bits), Expect = 8.6e-246, P = 8.6e-246
 Identities = 471/655 (71%), Positives = 541/655 (82%)

Query:     4 QLECLCKQLYESADGNLRVEAEKALVNFQNAPDTLAKCQLLLDRGDSSYAQAIAANTLTK 63
             QLE LCKQLYE+ D   R++AEKALV F N+PD L+KCQLLL+RG SSY+Q +AA  L+K
Sbjct:    10 QLEILCKQLYETTDTTTRLQAEKALVEFTNSPDCLSKCQLLLERGSSSYSQLLAATCLSK 69

Query:    64 LISRPAQGLSLQQRIDIPQGLSLQQRIDIRNYILNYLATRPKLPNFVIQALVTLFARITK 123
             L+SR +           P  L L+QRIDIRNY+LNYLATRPKL  FV QAL+ L+ARITK
Sbjct:    70 LVSRTSN----------P--LPLEQRIDIRNYVLNYLATRPKLAAFVTQALIQLYARITK 117

Query:   124 LGWFDSEKDEFVFRNVIQDVSNFLQGSVEHCIIGVQILSQLTGEMNQISEADAARSLTKH 183
             LGWFD +K+++VFRNVI DV+ FLQ SVEHCIIGV ILSQLT E+NQ+S AD+   LTKH
Sbjct:   118 LGWFDCQKEDYVFRNVIVDVTRFLQDSVEHCIIGVTILSQLTNEINQVSFADSTHPLTKH 177

Query:   184 RKIASSYRDIQLFDIFRLSCSLLSNAQENCKTMTLEGEGQI-FMTQLLGLAQNCLTFDFI 242
             RKIASS+RD  LFDIF LSC+LL  A    K + L  E Q   + QLL LA NCL FDFI
Sbjct:   178 RKIASSFRDSSLFDIFTLSCNLLKQASG--KNLNLNDESQHGLLMQLLKLAHNCLNFDFI 235

Query:   243 GTATDESSDDLCTVQIPTSWRPAFLDPNTLKLFFNLYHSLPSTLSHLALACLVQIASVRR 302
             GT+TDESSDDLCTVQIPTSWR AFLD +TL+LFF+LYHS+P +LS L L+CLVQIASVRR
Sbjct:   236 GTSTDESSDDLCTVQIPTSWRSAFLDSSTLQLFFDLYHSIPPSLSPLVLSCLVQIASVRR 295

Query:   303 SLFSNAERARFLTQLVNGVKQILQNPQGLSDANNYHEFCRLLARLKSNYQLGELVMVDNY 362
             SLF+NAERA+FL+ LV+GVK+IL+NPQ LSD NNYHEFCRLLARLKSNYQLGELV VDNY
Sbjct:   296 SLFNNAERAKFLSHLVDGVKRILENPQSLSDPNNYHEFCRLLARLKSNYQLGELVKVDNY 355

Query:   363 SEAIQLIAKFTVESLQMWQFAPNSVHYLLSLWQRMVASVPYIKAMEPHQLHTYTPEVTSA 422
              E I+LIA FTV SLQ W+FAPNSVHYLLSLWQR+ ASVPY+KA EPH L TYTPEVT A
Sbjct:   356 PEVIRLIANFTVTSLQHWEFAPNSVHYLLSLWQRLAASVPYVKATEPHMLETYTPEVTKA 415

Query:   423 YITSRLDSVAVVIRDNLEDPLDDLGMVSQQLEQLSAIGRCEYQKTCSLLVQLFDQSARLY 482
             YITSRL+SV +++RD LEDPLDD G+V QQL+QLS IGRCEY+KTC+LLVQLFDQSA+ Y
Sbjct:   416 YITSRLESVHIILRDGLEDPLDDAGLVQQQLDQLSTIGRCEYEKTCALLVQLFDQSAQSY 475

Query:   483 QELISTPSPNQIDIAIQEGRLTWLVYIIGAAVGGRVSFNSNEDHDAMDGELLVCRVLQLM 542
             QEL+ + + + +DIA+QEGRLTWLVYIIGA +GGRVSF S ++ DAMDGEL VCRVLQLM
Sbjct:   476 QELLQSTNSSTMDIAVQEGRLTWLVYIIGAVIGGRVSFASTDEQDAMDGEL-VCRVLQLM 534

Query:   543 NLTDPRLLGPGPGCEKLELAMLSFFEQFRKIYVGDQVQKNSKVYRRLNEVLGLCDEATVL 602
             NLTD RL   G   EKLELAMLSFFEQFRKIY+GDQVQK+SK+YRRL+EVLGL DE  VL
Sbjct:   535 NLTDSRLAQAGN--EKLELAMLSFFEQFRKIYIGDQVQKSSKLYRRLSEVLGLNDETMVL 592

Query:   603 SVFVRKIITNLKYWGRSEQIITKTLQLLNDLSVGYSCVRKLVKLDEVQFMLNNHT 657
             SVF+ KIITNLKYWG+ E I +KTLQLLNDLS+GY  VRKLVKL  VQFMLNNHT
Sbjct:   593 SVFIGKIITNLKYWGQCEPITSKTLQLLNDLSIGYPYVRKLVKLSAVQFMLNNHT 647

GO:0005643 "nuclear pore" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0008565 "protein transporter activity" evidence=IEA

UNIPROTKB\|Q5ZLT0 XPO7 "Exportin-7" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|F1NFR4 XPO7 "Exportin-7" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|J9P0Z1 XPO7 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|E9PEN8 XPO7 "Exportin-7" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|A1A4I8 XPO7 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|E2RH14 XPO7 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|E7ESC6 XPO7 "Exportin-7" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|Q9UIA9 XPO7 "Exportin-7" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

MGI\|MGI:1929705 Xpo7 "exportin 7" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9GQN0	RBP16_DROME	No assigned EC number	0.6352	0.9651	0.5801	yes	N/A
Q9EPK7	XPO7_MOUSE	No assigned EC number	0.7114	0.9606	0.5832	yes	N/A
Q5ZLT0	XPO7_CHICK	No assigned EC number	0.7175	0.9606	0.5832	yes	N/A
Q9UIA9	XPO7_HUMAN	No assigned EC number	0.7145	0.9606	0.5832	yes	N/A
Q5R9G4	XPO7_PONAB	No assigned EC number	0.7129	0.9606	0.5832	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Alignment Graph	Length	Definition	E-value
Query		660
smart00913		67	smart00913, IBN_N, Importin-beta N-terminal domain	3e-06
COG5101		1053	COG5101, CRM1, Importin beta-related nuclear trans	6e-05
pfam03810		71	pfam03810, IBN_N, Importin-beta N-terminal domain	4e-04

>gnl\|CDD\|197981 smart00913, IBN_N, Importin-beta N-terminal domain	Back alignment and domain information

 Score = 44.5 bits (106), Expect = 3e-06
 Identities = 20/79 (25%), Positives = 33/79 (41%), Gaps = 12/79 (15%)

Query: 24  AEKALVNFQNAPDTLAKCQLLLDRGDSSYAQAIAANTLTKLISRPAQGLSLQQRIDIPQG 83
           AEK L  FQ +P        +L   +  Y + +AA TL   I+R                
Sbjct: 1   AEKQLEQFQKSPGFWLLLLEILANSEDQYVRQLAAITLKNKITR------------RWSS 48

Query: 84  LSLQQRIDIRNYILNYLAT 102
           L  +++ +I+N +L  L +
Sbjct: 49  LPEEEKEEIKNSLLELLLS 67

Members of the importin-beta (karyopherin-beta) family can bind and transport cargo by themselves, or can form heterodimers with importin-alpha. As part of a heterodimer, importin-beta mediates interactions with the pore complex, while importin-alpha acts as an adaptor protein to bind the nuclear localisation signal (NLS) on the cargo through the classical NLS import of proteins. Importin-beta is a helicoidal molecule constructed from 19 HEAT repeats. Many nuclear pore proteins contain FG sequence repeats that can bind to HEAT repeats within importins.. which is important for importin-beta mediated transport. Length = 67

>gnl\|CDD\|227432 COG5101, CRM1, Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]	Back alignment and domain information

>gnl\|CDD\|217743 pfam03810, IBN_N, Importin-beta N-terminal domain	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		660
KOG1410\|consensus		1082		100.0
COG5101		1053	CRM1 Importin beta-related nuclear transport recep	99.96
KOG2020\|consensus		1041		99.79
KOG2021\|consensus		980		99.7
KOG2022\|consensus		982		99.66
KOG2171\|consensus		1075		99.29
KOG2081\|consensus		559		99.28
KOG4541\|consensus		748		99.21
PF08389		148	Xpo1: Exportin 1-like protein; InterPro: IPR013598	99.04
KOG1991\|consensus		1010		98.92
KOG1992\|consensus		960		98.49
PF03810		77	IBN_N: Importin-beta N-terminal domain; InterPro:	98.47
KOG1241\|consensus		859		98.05
KOG1993\|consensus		978		97.99
KOG4541\|consensus		748		97.94
COG5657		947	CSE1 CAS/CSE protein involved in chromosome segreg	97.49
KOG2274\|consensus		1005		97.24
KOG2023\|consensus		885		97.11
COG5656		970	SXM1 Importin, protein involved in nuclear import	96.68

>KOG1410\|consensus	Back alignment and domain information

Probab=100.00  E-value=2.4e-151  Score=1199.14  Aligned_cols=636  Identities=66%  Similarity=1.070  Sum_probs=621.3

Q ss_pred             ChhHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcccHHHHHHHHhcCCChhHHHHHHHHHHHHhcCCcccccccccccc
Q psy46             1 EVRQLECLCKQLYESADGNLRVEAEKALVNFQNAPDTLAKCQLLLDRGDSSYAQAIAANTLTKLISRPAQGLSLQQRIDI   80 (660)
Q Consensus         1 ~l~~lE~~~~~ly~~~d~~~r~~Ae~~L~~f~~s~~~~~~c~~iL~~S~~~~~~f~aa~~L~~~i~~~w~~~~~~~~~~~   80 (660)
                      ++++||.+|+.+|.+.|+.+|.+||+.|.+|..+|+++++|+.+|++++.+|+++.|+++|.|.+.+.-.          
T Consensus         3 sLaqLe~lCk~LY~s~D~~~R~~AE~~L~e~s~speclskCqlll~~gs~pYs~mlAst~L~Klvs~~t~----------   72 (1082)
T KOG1410|consen    3 SLAQLESLCKDLYESTDPTARHRAEKALAELSESPECLSKCQLLLERGSYPYSQMLASTCLMKLVSRKTP----------   72 (1082)
T ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHcCCCC----------
Confidence            4789999999999999999999999999999999999999999999999999999999999999999844          


Q ss_pred             CCCCCHHHHHHHHHHHHHHHhcC-CCChhHHHHHHHHHHHHHHhhccCCCCchhHHHhhHHHHHHHHhcCC-chhHHHHH
Q psy46            81 PQGLSLQQRIDIRNYILNYLATR-PKLPNFVIQALVTLFARITKLGWFDSEKDEFVFRNVIQDVSNFLQGS-VEHCIIGV  158 (660)
Q Consensus        81 ~~~l~~~~r~~lr~~ll~yl~~~-~~~~~~V~~~l~~~la~i~K~~W~d~~~~~~~~~~~i~~v~~~l~~~-~~~~~igl  158 (660)
                         +|.++|.+||+|++||++++ |++++||..++++++|+|+|.||+|..+++++||++|+++.+|++++ .+||++|+
T Consensus        73 ---lpl~qrldir~Yilnylat~~Pk~~~fvi~sLiQl~arlTK~gW~d~~k~~y~FRd~v~~~~kfl~~~~ve~~~igv  149 (1082)
T KOG1410|consen   73 ---LPLEQRLDIRNYILNYLATGAPKLAPFVIQSLIQLFARLTKLGWFDQQKDEYVFRDPVDDVTKFLQMDNVEHCIIGV  149 (1082)
T ss_pred             ---CcHHHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHhccccccccccchhhhhHHHHHHHhccCchHHHHHHH
Confidence               99999999999999999996 99999999999999999999999999999999999999999999855 89999999


Q ss_pred             HHHHHHHHHhcccccccccccHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhcccCCCCchhHH-HHHHHHHHHHHhc
Q psy46           159 QILSQLTGEMNQISEADAARSLTKHRKIASSYRDIQLFDIFRLSCSLLSNAQENCKTMTLEGEGQI-FMTQLLGLAQNCL  237 (660)
Q Consensus       159 ~iL~~Lv~E~~~~~~s~~~~~~~~hrk~~~sF~~~~L~~if~~~~~~L~~~~~~~~~~~~~~~~~~-l~~~~L~l~~~~L  237 (660)
                      .||+.|++||++.   +.+.+..+|||++.+|||+.|.+||.+++.+|+...    +.|++++.+. ++.++|++..+||
T Consensus       150 ~iLsqLvqemN~~---~~~~p~tkHRkias~FRD~sL~~vf~laln~L~~~~----~~nlnd~~q~~L~~~vL~L~l~Cl  222 (1082)
T KOG1410|consen  150 QILSQLVQEMNQA---DGMDPSTKHRKIASSFRDDSLFDVFSLALNLLKDNV----DLNLNDRAQLGLLMQVLKLNLNCL  222 (1082)
T ss_pred             HHHHHHHHHhhCC---CCCCcchHHHHHHhhhhhhHHHHHHHHHHHHHHHhc----ccCcccHhHhhHHHHHHHHHhhhc
Confidence            9999999999999   999999999999999999999999999999999875    3667776555 9999999999999


Q ss_pred             cccccCCCCCCCCCCcccccCCCcccccccCchhHHHHHHHHhhCCchhHHHHHHHHHHHhccccCCCChHHHHHHHHHH
Q psy46           238 TFDFIGTATDESSDDLCTVQIPTSWRPAFLDPNTLKLFFNLYHSLPSTLSHLALACLVQIASVRRSLFSNAERARFLTQL  317 (660)
Q Consensus       238 s~dF~~~~~de~~~~~~~v~~p~sW~~~l~~~~~l~llf~ly~~~~~~l~~~al~cL~qlaslr~sif~~~er~~~l~~l  317 (660)
                      +|||+|++.||++||.++||+|++||..|.|++++++||++|+.+||+++..+|+||+|+||+||++|+++||.+|++++
T Consensus       223 ~FDfiGss~DEssed~ctVQIPTsWRs~f~d~stlqlfFdly~slp~~~S~~alsclvqlASvRRsLFN~aeRa~yl~~L  302 (1082)
T KOG1410|consen  223 NFDFIGSSTDESSEDLCTVQIPTSWRSSFLDSSTLQLFFDLYHSLPPELSELALSCLVQLASVRRSLFNGAERAKYLQHL  302 (1082)
T ss_pred             cccccccccccccccccceecCcHHHHHhcCchHHHHHHHHhccCCchhhHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhcCCCCCCCcchHHHHHHHHHHhhhhcchhhhhcccCHHHHHHHHHHHHHHHHhhcccCcccHHHHHHHHHHH
Q psy46           318 VNGVKQILQNPQGLSDANNYHEFCRLLARLKSNYQLGELVMVDNYSEAIQLIAKFTVESLQMWQFAPNSVHYLLSLWQRM  397 (660)
Q Consensus       318 ~~g~~~il~~~~~l~d~e~~~~~crll~rl~~n~~l~~L~~~~~~~~~i~~l~~fT~~~l~~~~~~~~s~~~LL~~W~~l  397 (660)
                      ++|+..|+++|+|++|+++||+|||+++|+++|||++||+++|+|++||+++|+||++++|.|+|++||++|||.+|+||
T Consensus       303 v~Gvk~il~np~~LsD~~nyHeFCRllaRlktNYQL~ELv~v~~Y~e~irLiAeFTv~SLq~wefa~nSvyyLlt~WqRm  382 (1082)
T KOG1410|consen  303 VEGVKRILENPQGLSDPANYHEFCRLLARLKTNYQLGELVKVECYPEVIRLIAEFTVTSLQHWEFAPNSVYYLLTLWQRM  382 (1082)
T ss_pred             HHHHHHHHhCCcCCCCcchHHHHHHHHHHHHhhhhhHhhhccCCcHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccccccccCCCcchhhchHHHHHHHHHcccchhhhhhccCCCCCCCcHHHHHHHHHHHHhhhhhcHhhHHHHHHHHHHH
Q psy46           398 VASVPYIKAMEPHQLHTYTPEVTSAYITSRLDSVAVVIRDNLEDPLDDLGMVSQQLEQLSAIGRCEYQKTCSLLVQLFDQ  477 (660)
Q Consensus       398 ~~~~~~~~~~~~~~l~~~~~~I~~~yi~srL~~~~~~~~~~~ed~~dd~~~~~~qLe~i~~l~r~~~~~t~~~L~~l~~~  477 (660)
                      ++++||+|+.+||.+++|+|+|+++||+||++.++.+++|+.|||+||.+...+|||++++||||.|++||.+|+++|++
T Consensus       383 vaSVPyvk~~~phlLd~y~PeIt~afi~SRl~sV~~ivrd~~d~PLdd~~~~~q~le~l~~icRceYEkTc~llvq~fdq  462 (1082)
T KOG1410|consen  383 VASVPYVKNTEPHLLDTYCPEITKAFITSRLQSVEIIVRDGLDDPLDDTGAVQQQLEQLATICRCEYEKTCALLVQLFDQ  462 (1082)
T ss_pred             HhcCCcccCCChHHHhhhcHHHHHHHHHHHhhhhheecccCCCCcchhhHHHHHHHHHhhhhhhhhHhhHHHHHHHHHhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCchhhhHHHHHHHHHHHHHHHHhcCcccccCCCccccCccchhHHHHHHHHhhccccCCCCCCchH
Q psy46           478 SARLYQELISTPSPNQIDIAIQEGRLTWLVYIIGAAVGGRVSFNSNEDHDAMDGELLVCRVLQLMNLTDPRLLGPGPGCE  557 (660)
Q Consensus       478 ~~~~~~~~~~~~~~~~~~~~~~E~~l~WLv~i~g~~l~~~~~~~~~~~~~~~d~~L~~~~v~~l~~~~~~~l~~~~~~s~  557 (660)
                      .++.|+++.+.+.+++..+++.||+|.|||+|+|++++|+.++.++|+||+|||+| +|||+++|++.|+|+  |..+.+
T Consensus       463 ~aqsyqe~~~~~s~~~~d~ai~EgrL~Wlv~lvgtvV~gk~t~~Std~~d~mDgEL-~arvlql~nlmdsr~--~~~~n~  539 (1082)
T KOG1410|consen  463 NAQSYQELLQNGSANDADIAIQEGRLVWLVYLVGTVVGGKTTATSTDEHDAMDGEL-SARVLQLVNLMDSRL--PLKGNE  539 (1082)
T ss_pred             hHHHHHHHhcccCCCchhHHHHhhhhhhhHHHhHHHhcceecccccchhhhhhhHH-HHHHHHHHHhhhccc--chhhhH
Confidence            99999999999888889999999999999999999999999999999999999999 999999999999998  889999


Q ss_pred             HHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHhCCCChhHHHHHHHHHHHhhhccccCcHHHHHHHHHHHHHhhccc
Q psy46           558 KLELAMLSFFEQFRKIYVGDQVQKNSKVYRRLNEVLGLCDEATVLSVFVRKIITNLKYWGRSEQIITKTLQLLNDLSVGY  637 (660)
Q Consensus       558 ~l~~a~l~F~~~~~~~Yl~~~~~~~~~~~~~l~~~~g~~~~~~vl~~iv~ki~~nL~~w~~~~~vi~~tl~ll~~l~~~~  637 (660)
                      |+|.|+||||++|||+|+|||.+++||+|.++.+++|++|+..||++||+||+||||||+++++|+++||+||+|||.||
T Consensus       540 rle~ail~f~eqFRk~YvgDQ~~rsSkvY~rl~e~Lgi~de~~~L~viv~KI~TNLK~w~~~e~vi~~tLslf~dLs~GY  619 (1082)
T KOG1410|consen  540 RLELAILHFLEQFRKAYVGDQIQRSSKVYARLSEVLGITDESDVLGVIVGKILTNLKYWGRNEPVISLTLSLFNDLSLGY  619 (1082)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhcccccCCchHHHHHHHHHHHHhhhH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhhhhcccHHHHHHHhcCCCC
Q psy46           638 SCVRKLVKLDEVQFMLNNHTVS  659 (660)
Q Consensus       638 ~~~~~l~~~~~~~~l~~nh~~~  659 (660)
                      +++|+|+|+|+||||++|||+|
T Consensus       620 ~~~kkL~kl~~VqfmlnNHT~e  641 (1082)
T KOG1410|consen  620 SAVKKLVKLDAVQFMLNNHTSE  641 (1082)
T ss_pred             HHHHHHhcchhhhhHhcccchh
Confidence            9999999999999999999997

>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]	Back alignment and domain information

>KOG2020\|consensus	Back alignment and domain information

>KOG2021\|consensus	Back alignment and domain information

>KOG2022\|consensus	Back alignment and domain information

>KOG2171\|consensus	Back alignment and domain information

>KOG2081\|consensus	Back alignment and domain information

>KOG4541\|consensus	Back alignment and domain information

>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane	Back alignment and domain information

>KOG1991\|consensus	Back alignment and domain information

>KOG1992\|consensus	Back alignment and domain information

>PF03810 IBN_N: Importin-beta N-terminal domain; InterPro: IPR001494 Karyopherins are a group of proteins involved in transporting molecules through the pores of the nuclear envelope	Back alignment and domain information

>KOG1241\|consensus	Back alignment and domain information

>KOG1993\|consensus	Back alignment and domain information

>KOG4541\|consensus	Back alignment and domain information

>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning]	Back alignment and domain information

>KOG2274\|consensus	Back alignment and domain information

>KOG2023\|consensus	Back alignment and domain information

>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		660
3m1i_C		1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	1e-26
3a6p_A		1204	Exportin-5; exportin-5, RANGTP, nuclearexport, imp	2e-21
3gjx_A		1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	2e-19
2x19_B		963	Importin-13; nuclear transport, protein transport;	4e-14
2x1g_F		971	Cadmus; transport protein, developmental protein,	1e-10
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-09
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-09
3ibv_A		980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	2e-07
2bpt_A		861	Importin beta-1 subunit; nuclear transport, nucleo	4e-04

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B Length = 1049	Back alignment and structure

 Score =  115 bits (287), Expect = 1e-26
 Identities = 85/610 (13%), Positives = 203/610 (33%), Gaps = 83/610 (13%)

Query: 2   VRQLECLCKQLYESADGNLRVEAEKALVNFQNAPDTLAKCQLLLDRGDSSYAQAIAANTL 61
           +  L+ +    Y+ +    + +A++ L  FQ+ PD   K   +L    +  ++ IA + L
Sbjct: 15  IALLDQVVSTFYQGSGVQ-QKQAQEILTKFQDNPDAWQKADQILQFSTNPQSKFIALSIL 73

Query: 62  TKLISRPAQGLSLQQRIDIPQGLSLQQRIDIRNYILNYLATRPKL--PNFVIQALVTLFA 119
            KLI+R  + L    RI I        R  +   I++             +I        
Sbjct: 74  DKLITRKWKLLPNDHRIGI--------RNFVVGMIISMCQDDEVFKTQKNLINKSDLTLV 125

Query: 120 RITKLGWFDSEKDEFVFRNVIQDVSNFLQGSVEHCIIGVQILSQLTGEMNQISEADAARS 179
           +I K  W  +      +   I ++      SV  C   + +L  L+ E+   S     ++
Sbjct: 126 QILKQEWPQN------WPEFIPELIGSSSSSVNVCENNMIVLKLLSEEVFDFSAEQMTQA 179

Query: 180 LTKHRKIASSYRDIQLFDIFRLSCSLLSNAQENCKTMTLEGEGQIFMTQLLGLAQNCLTF 239
              H K + S    +   IF+L   +L     +   +                       
Sbjct: 180 KALHLKNSMSK---EFEQIFKLCFQVLEQGSSSSLIVAT--------------------- 215

Query: 240 DFIGTATDESSDDLCTVQIPTSWRP--AFLDPNTLKLFFNLYHSLPSTLSHLALACLVQI 297
                        L ++     W P     + N L+L    + + P     + L CL ++
Sbjct: 216 -------------LESLLRYLHWIPYRYIYETNILELLSTKFMTSP-DTRAITLKCLTEV 261

Query: 298 ASVRRSLFSNAERARFLTQLVNGVKQILQNPQGLSD---------ANNYHEFCRLLARLK 348
           ++++    ++  + + +    N ++QI  +   ++            N   F + LA   
Sbjct: 262 SNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFL 321

Query: 349 SNYQLGELVMVDNYSEAIQLIAKFTVESLQMWQFAPNSVHYLLSLWQRMVASVPYIKAME 408
           + Y      ++++     +L+       +Q+ +     +      +   + +  + + ++
Sbjct: 322 TTYLARNRALLESDESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLK 381

Query: 409 PHQLHTYTPEVTSAYITSRLDSVAVVIRDNLEDPLDDLGMVSQQLEQLSAIGRCEYQKTC 468
            H       ++    I + +    V++ +N     D+  +V + +++   I   + ++  
Sbjct: 382 KHIYEEICSQLRLVIIENMVRPEEVLVVEN-----DEGEIVREFVKESDTIQLYKSEREV 436

Query: 469 SLLVQLFDQSARLYQELISTPSPNQIDIAIQEGRLTWLVYIIGAAVGGRVSFNSNEDHDA 528
                       L          +++   I     +W      +   G +S   +ED   
Sbjct: 437 ------LVYLTHLNVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSED--- 487

Query: 529 MDGELLVCRVLQLMNLTDPRLLGPGPGCEKLELAMLSFFEQFRKIYVGDQVQKNSKVYRR 588
            +   +V  +  L++LT  +          +   ++    Q+ + ++         V  +
Sbjct: 488 TEKRFVVTVIKDLLDLTVKKR--GKDNKAVVASDIMYVVGQYPR-FLKAHWNFLRTVILK 544

Query: 589 LNEVLGLCDE 598
           L E +    E
Sbjct: 545 LFEFMHETHE 554

PyMOL of 3m1i

>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens} Length = 1204	Back alignment and structure

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A Length = 1073	Back alignment and structure

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B Length = 963	Back alignment and structure

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} Length = 971	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* Length = 980	Back alignment and structure

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		660
3gjx_A		1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	99.97
4hat_C		1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	99.97
2x19_B		963	Importin-13; nuclear transport, protein transport;	99.95
3m1i_C		1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	99.93
3a6p_A		1204	Exportin-5; exportin-5, RANGTP, nuclearexport, imp	99.93
3ibv_A		980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	99.93
2x1g_F		971	Cadmus; transport protein, developmental protein,	99.9
1wa5_C		960	Importin alpha RE-exporter; nuclear transport/comp	99.45
4fdd_A		852	Transportin-1; heat repeats, karyopherin, nuclear	99.41
2bpt_A		861	Importin beta-1 subunit; nuclear transport, nucleo	99.15
1ibr_B		462	P95, importin beta-1 subunit, nuclear factor; smal	99.12
1qgr_A		876	Protein (importin beta subunit); transport recepto	98.42
1u6g_C		1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	94.72

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A	Back alignment and structure

Probab=99.97  E-value=3.3e-28  Score=291.10  Aligned_cols=415  Identities=18%  Similarity=0.277  Sum_probs=298.2

Q ss_pred             ChhHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcccHHHHHHHHhcCCChhHHHHHHHHHHHHhcCCcccccccccccc
Q psy46             1 EVRQLECLCKQLYESADGNLRVEAEKALVNFQNAPDTLAKCQLLLDRGDSSYAQAIAANTLTKLISRPAQGLSLQQRIDI   80 (660)
Q Consensus         1 ~l~~lE~~~~~ly~~~d~~~r~~Ae~~L~~f~~s~~~~~~c~~iL~~S~~~~~~f~aa~~L~~~i~~~w~~~~~~~~~~~   80 (660)
                      |++.||+++.++|+| ++++|++|+++|.+|+++|++|..|..||++|++++++|||+++|++.|.++|+          
T Consensus        26 Dv~~Le~lv~~ly~p-~~~~r~qA~~~L~q~q~sp~aw~~~~~iL~~s~~~~vR~fAa~~L~~~I~~~W~----------   94 (1073)
T 3gjx_A           26 DINLLDNVVNCLYHG-EGAQQRMAQEVLTHLKEHPDAWTRVDTILEFSQNMNTKYYGLQILENVIKTRWK----------   94 (1073)
T ss_dssp             SHHHHHHHHHTTTCS-SHHHHHHHHHHHHTSSCCSCHHHHHTCC---CCSHHHHHHHHHHHHHHHHHTGG----------
T ss_pred             CHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHcCchHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhh----------
Confidence            578999999999987 688999999999999999999999999999999999999999999999999999          


Q ss_pred             CCCCCHHHHHHHHHHHHHHHhcC---C---CChhHHHHHHHHHHHHHHhhccCCCCchhHHHhhHHHHHHHHhcCCchhH
Q psy46            81 PQGLSLQQRIDIRNYILNYLATR---P---KLPNFVIQALVTLFARITKLGWFDSEKDEFVFRNVIQDVSNFLQGSVEHC  154 (660)
Q Consensus        81 ~~~l~~~~r~~lr~~ll~yl~~~---~---~~~~~V~~~l~~~la~i~K~~W~d~~~~~~~~~~~i~~v~~~l~~~~~~~  154 (660)
                        .+++++|..||+++++++.+.   +   ..++.+++|+++++|.|+|++|++      .|+++++++.+.++.++.++
T Consensus        95 --~L~~e~~~~LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~------~Wp~fi~dLv~~~~~~~~~~  166 (1073)
T 3gjx_A           95 --ILPRNQCEGIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPK------HWPTFISDIVGASRTSESLC  166 (1073)
T ss_dssp             --GSCHHHHHHHHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTT------TCTTHHHHHHHHHHHCHHHH
T ss_pred             --hCCHHHHHHHHHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChh------hccHHHHHHHHHhCCCHHHH
Confidence              999999999999999999874   2   234777899999999999999987      38999999999987788899


Q ss_pred             HHHHHHHHHHHHHhcccccccccccHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHH
Q psy46           155 IIGVQILSQLTGEMNQISEADAARSLTKHRKIASSYRDIQLFDIFRLSCSLLSNAQENCKTMTLEGEGQIFMTQLLGLAQ  234 (660)
Q Consensus       155 ~igl~iL~~Lv~E~~~~~~s~~~~~~~~hrk~~~sF~~~~L~~if~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~L~l~~  234 (660)
                      ..++.+|..|++|+....+++  ++-.+.++.+-.++. ..+.|++++..+|++.           ....++..+|+.+.
T Consensus       167 ~~~L~IL~~L~EEV~d~~~~~--l~~~r~~~lk~~L~~-~~~~Il~ll~~iL~~~-----------~~~~lv~~~L~~L~  232 (1073)
T 3gjx_A          167 QNNMVILKLLSEEVFDFSSGQ--ITQVKAKHLKDSMCN-EFSQIFQLCQFVMENS-----------QNAPLVHATLETLL  232 (1073)
T ss_dssp             HHHHHHHHHHHHHHTTSHHHH--BCHHHHHHHHHHHHH-TCHHHHHHHHHHHHHC-----------CCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhccccc--ccHHHHHHHHHHHHH-HHHHHHHHHHHHhccc-----------CCHHHHHHHHHHHH
Confidence            999999999999976542212  244455556666665 4777777776666531           12457788999999


Q ss_pred             HhccccccCCCCCCCCCCcccccCCCcccccccCchhHHHHH-HHHhhCCchhHHHHHHHHHHHhccccCCCChHHH-HH
Q psy46           235 NCLTFDFIGTATDESSDDLCTVQIPTSWRPAFLDPNTLKLFF-NLYHSLPSTLSHLALACLVQIASVRRSLFSNAER-AR  312 (660)
Q Consensus       235 ~~Ls~dF~~~~~de~~~~~~~v~~p~sW~~~l~~~~~l~llf-~ly~~~~~~l~~~al~cL~qlaslr~sif~~~er-~~  312 (660)
                      .+++|...+                     .+.+++++++++ ....  .+.+...|++||..+++.+.+=+  .+. ..
T Consensus       233 ~~~sWI~i~---------------------~i~~~~ll~~L~~~~L~--~~~~r~aA~dcL~eIv~k~~~~~--~~~~~~  287 (1073)
T 3gjx_A          233 RFLNWIPLG---------------------YIFETKLISTLIYKFLN--VPMFRNVSLKCLTEIAGVSVSQY--EEQFET  287 (1073)
T ss_dssp             HHTTTSCTH---------------------HHHSSSHHHHHHHHTSS--SHHHHHHHHHHHHHHHHSCSGGG--HHHHHH
T ss_pred             HHHHhcCHH---------------------HhccchHHHHHHHHhcC--ChHHHHHHHHHHHHHHhccccch--HHHHHH
Confidence            999998644                     356678888774 3332  56799999999999999852211  222 33


Q ss_pred             HHHHHHHHHHHhhcCCC---------CCCCcchHHHHHHHHHHhhhhcchhhhhcccCHHHHHHHHHHHHHHHHhhcccC
Q psy46           313 FLTQLVNGVKQILQNPQ---------GLSDANNYHEFCRLLARLKSNYQLGELVMVDNYSEAIQLIAKFTVESLQMWQFA  383 (660)
Q Consensus       313 ~l~~l~~g~~~il~~~~---------~l~d~e~~~~~crll~rl~~n~~l~~L~~~~~~~~~i~~l~~fT~~~l~~~~~~  383 (660)
                      .+..++..+..++....         .-+|+|..+++||++..+.++|. .-+.+.|.+...+....++.+.+-.-.  .
T Consensus       288 lf~~~~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e~~~-~lIe~~p~~~~~l~~~l~~ll~~s~~~--d  364 (1073)
T 3gjx_A          288 LFTLTMMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKEHG-QLLEKRLNLREALMEALHYMLLVSEVE--E  364 (1073)
T ss_dssp             HHHHHHHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHH-HHHHHCGGGHHHHHHHHHHHHHHTTCS--C
T ss_pred             HHHHHHHHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHHHHHHH-HHHhcCccchHHHHHHHHHHHHHhCCC--c
Confidence            44455555555554321         23356788889999999999985 445555565555555555566554432  3


Q ss_pred             cccHHHHHHHHHHHhcccccccc-----CCC-----------cchhhchHHHHH---HHHHcccchhhhhhc-cCCCCCC
Q psy46           384 PNSVHYLLSLWQRMVASVPYIKA-----MEP-----------HQLHTYTPEVTS---AYITSRLDSVAVVIR-DNLEDPL  443 (660)
Q Consensus       384 ~~s~~~LL~~W~~l~~~~~~~~~-----~~~-----------~~l~~~~~~I~~---~yi~srL~~~~~~~~-~~~ed~~  443 (660)
                      .+.+.+++++|+.++..+- ...     ..|           .....|. .|+.   ..+-+|++.|+.+.. |+++.+.
T Consensus       365 ~ei~kitf~fW~~L~~~L~-~e~~~~~~~~~~~~~~~~~~~~~~~~~y~-~i~~~L~~vlI~~m~~P~ev~i~e~e~ge~  442 (1073)
T 3gjx_A          365 TEIFKICLEYWNHLAAELY-RESPFSTSASPLLSGSQHFDIPPRRQLYL-TVLSKVRLLMVSRMAKPEEVLVVENDQGEV  442 (1073)
T ss_dssp             HHHHHHHHHHHHHHHHHHH-HHCCSCCCCSSCTTSSCCSCSCHHHHTTH-HHHHHHHHHHHHTCCCSCCEEEEECSSSCE
T ss_pred             HHHHHHHHHHHHHHHHHHH-hhccccccccccccccccccchhHHHHHH-HHHHHHHHHHHHhcCCCccccccCcccchH
Confidence            4578999999999987642 111     011           1111122 2332   234589998876543 3221111


Q ss_pred             -----Cc---HHHHHHHHHHHHhhhhhcHhhHHHHHHHHHHHH
Q psy46           444 -----DD---LGMVSQQLEQLSAIGRCEYQKTCSLLVQLFDQS  478 (660)
Q Consensus       444 -----dd---~~~~~~qLe~i~~l~r~~~~~t~~~L~~l~~~~  478 (660)
                           .|   ...++..-+++..++...++.+.+.+.+.+.+.
T Consensus       443 ~re~~~d~~~~~ly~~mrd~L~~lt~l~~~~~~~i~~~~l~~~  485 (1073)
T 3gjx_A          443 VREFMKDTDSINLYKNMRETLVYLTHLDYVDTEIIMTKKLQNQ  485 (1073)
T ss_dssp             EEEECSSCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhcchHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence                 12   234666667778888888999988888777654

PyMOL of 3gjx

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B	Back alignment and structure

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B	Back alignment and structure

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B	Back alignment and structure

>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}	Back alignment and structure

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*	Back alignment and structure

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}	Back alignment and structure

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A	Back alignment and structure

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*	Back alignment and structure

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A	Back alignment and structure

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A	Back alignment and structure

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A	Back alignment and structure

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		660
d2bpta1		861	a.118.1.1 (A:1-861) Importin beta {Baker's yeast (	2e-05
d1qbkb_		888	a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi	0.001

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 861	Back information, alignment and structure


class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.2 bits (105), Expect = 2e-05
 Identities = 55/461 (11%), Positives = 127/461 (27%), Gaps = 28/461 (6%)

Query: 1   EVRQLECLCKQLYESADGNLRVEAEKALVNFQNAPD---TLAKCQLLLDRGDSSYAQAIA 57
              +   L +    S D N+R+ +E  L    N           Q+L+D       + +A
Sbjct: 2   STAEFAQLLENSILSPDQNIRLTSETQLKKLSNDNFLQFAGLSSQVLIDENTKLEGRILA 61

Query: 58  ANTLTKLISRPAQGLSLQQRIDIPQGLSLQQRIDIRNYILNYLATRPKLPNFVIQALVTL 117
           A TL   +       + Q        +S + +  I+   L  L +       +  A   L
Sbjct: 62  ALTLKNELVSKDSVKTQQFAQRWITQVSPEAKNQIKTNALTALVSIEPR---IANAAAQL 118

Query: 118 FARITKLGWFDSEKDEFVFRNVIQDVSNFLQGSVEHCIIGVQILSQLTGEMNQISEADAA 177
            A I  +        E   + ++ +     +         +  L  +    +  S+A  +
Sbjct: 119 IAAIADIELPHGAWPEL-MKIMVDNTGA--EQPENVKRASLLALGYMCESADPQSQALVS 175

Query: 178 RSLTKHRKIASSYRDIQLFDIFRLSCSLLSNAQENCKTMTLEGEGQIFMTQLLGLAQNCL 237
            S      I      +Q       S ++   A        +  +  +            +
Sbjct: 176 SSNNILIAI------VQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVV 229

Query: 238 TFDFIGTATDESSDDLCTVQIPTSWRPAFLDPNTLKLFFNL----YHSLPSTLSHLALAC 293
                    +  +     +    S    F+ P   +  + L      S    ++ + +  
Sbjct: 230 CEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEF 289

Query: 294 LVQIASVRRSL-FSNAERARFLTQLVNGVKQILQNPQGLSDANNYHEFCRLLARLKSNYQ 352
              I      + +  A+  +   Q  N     ++        +       LL R   + +
Sbjct: 290 WSTICEEEIDIAYELAQFPQSPLQSYNFALSSIK--------DVVPNLLNLLTRQNEDPE 341

Query: 353 LGELVMVDNYSEAIQLIAKFTVESLQMWQFAPNSVHYLLSLWQRMVASVPYIKAMEPHQL 412
             +  +  +    +QL A+     +          +     W+   A+V    ++     
Sbjct: 342 DDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPD 401

Query: 413 HTYTPEVTSAYITSRLDSVAVVIRDNLEDPLDDLGMVSQQL 453
                      + S L+ +        E     +G ++  +
Sbjct: 402 KVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSV 442

PyMOL of d2bpta1

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		660
d1wa5c_		959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	99.43
d2bpta1		861	Importin beta {Baker's yeast (Saccharomyces cerevi	99.03
d1qgra_		876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	98.76
d1ibrb_		458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	98.22
d1qbkb_		888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	97.46

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.43  E-value=2e-10  Score=133.63  Aligned_cols=154  Identities=14%  Similarity=0.106  Sum_probs=131.4

Q ss_pred             hHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcccHHHHHHHHhcCCCh-hHHHHHHHHHHHHhcCCccccccccccccC
Q psy46             3 RQLECLCKQLYESADGNLRVEAEKALVNFQNAPDTLAKCQLLLDRGDSS-YAQAIAANTLTKLISRPAQGLSLQQRIDIP   81 (660)
Q Consensus         3 ~~lE~~~~~ly~~~d~~~r~~Ae~~L~~f~~s~~~~~~c~~iL~~S~~~-~~~f~aa~~L~~~i~~~w~~~~~~~~~~~~   81 (660)
                      ..+|.+++.+-.+.+++.|++||+.|.++.++|+.+..+..|+.+.+++ .++..|+-.|++.|.+.|..      .+..
T Consensus         2 ~d~~~l~~ll~~s~~~~~~k~Ae~~L~~~~~~p~f~~~L~~i~~~~~~~~~iR~~A~i~lKn~i~~~W~~------~~~~   75 (959)
T d1wa5c_           2 SDLETVAKFLAESVIASTAKTSERNLRQLETQDGFGLTLLHVIASTNLPLSTRLAGALFFKNFIKRKWVD------ENGN   75 (959)
T ss_dssp             CHHHHHHHHHHHTTSGGGHHHHHHHHHHHHTSTTHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHSBC------SSSC
T ss_pred             CcHHHHHHHHHHCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccc------cccc
Confidence            3577888877778899999999999999999999999999999888765 79999999999999999971      0111


Q ss_pred             CCCCHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhhccCCCCchhHHHhhHHHHHHHHhc-CCchhHHHHHHH
Q psy46            82 QGLSLQQRIDIRNYILNYLATRPKLPNFVIQALVTLFARITKLGWFDSEKDEFVFRNVIQDVSNFLQ-GSVEHCIIGVQI  160 (660)
Q Consensus        82 ~~l~~~~r~~lr~~ll~yl~~~~~~~~~V~~~l~~~la~i~K~~W~d~~~~~~~~~~~i~~v~~~l~-~~~~~~~igl~i  160 (660)
                      ..+|+++|..||+.+++.+.+   .++-++++++.+++.|++.+|++      .|+++++.+.+.++ +++.....|+.+
T Consensus        76 ~~i~~e~k~~Ik~~ll~~l~~---~~~~ir~~l~~~i~~I~~~d~p~------~Wp~ll~~l~~~l~s~~~~~~~~~L~~  146 (959)
T d1wa5c_          76 HLLPANNVELIKKEIVPLMIS---LPNNLQVQIGEAISSIADSDFPD------RWPTLLSDLASRLSNDDMVTNKGVLTV  146 (959)
T ss_dssp             BSSCHHHHHHHHHHHHHHHHH---SCHHHHHHHHHHHHHHHHHHSTT------TCTTHHHHHHTTCCSSCTTHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHhC---CcHHHHHHHHHHHHHHHHHhCcc------ccHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            148999999999999999875   35779999999999999999976      38999999999875 456788889999


Q ss_pred             HHHHHHHhccc
Q psy46           161 LSQLTGEMNQI  171 (660)
Q Consensus       161 L~~Lv~E~~~~  171 (660)
                      |..++.++...
T Consensus       147 l~~i~k~~~~~  157 (959)
T d1wa5c_         147 AHSIFKRWRPL  157 (959)
T ss_dssp             HHHHHGGGTTS
T ss_pred             HHHHHHHHHhh
Confidence            99999988654

PyMOL of d1wa5c_

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure