Psyllid ID: psy4709

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80------
Protein Sequence
MSSKLPKSTLNFRQFLLRAEVLGLYKTFLRTAKEIPDESSRKEMIDWIRSEFKHNKHLSDETSIKMMIQYGQRSLKEVESSVSLIK
Secondary Structure (PSIPRED)
cccccccccccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cccccccccccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mssklpkstLNFRQFLLRAEVLGLYKTFLRTakeipdessrKEMIDWIRSEfkhnkhlsdeTSIKMMIQYGQRSLKEVESSVSLIK
Flexible Loop (DISEMBL)
mssklpkstlnFRQFLLRAEVLGLYKTFlrtakeipdessrKEMIDWIRSEFkhnkhlsdetsIKMMIQYGQRslkevessvslik
Low Complexity Region (SEG)
MSSKLPKSTLNFRQFLLRAEVLGLYKTFLRTAKEIPDESSRKEMIDWIRSEFKHNKHLSDETSIKMMIQYGQRSLKEVESSVSLIK
Disordered region (IsUnstruct)
*********LNFRQFLLRAEVLGLYKTFLRTAK***********IDWIRS************************************
Disordered Region (DISOPRED)
**********NFRQFLLRAEVLGLYKTFLRTAKEIPDESSRKEMIDWIRSEFKHNKHLSDETSIKMMIQYGQRSLKEVESSVS***
Disordered Region (DISEMBL)
********TLNFRQFLLRAEVLGLYKTFLRTAKEIPDESSRKEMIDWIRSEFKHNKHLSDETSIKMMIQYGQ**************
Disordered Region (DISPRO)
****LPKSTLNFRQFLLRAEVLGLYKTFLRTAKEIPDESSRKEMIDWIRSEFKHNKHLSDETSIKMMIQYGQRSLKEVESSVSLI*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSSKLPKSTLNFRQFLLRAEVLGLYKTFLRTAKEIPDESSRKEMIDWIRSEFKHNKHLSDETSIKMMIQYGQRSLKEVESSVSLIK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	86	2.2.26 [Sep-21-2011]
Q5PQ90	87	LYR motif-containing prot	N/A	N/A	1.0	0.988	0.453	2e-19
B3DLF3	87	LYR motif-containing prot	yes	N/A	1.0	0.988	0.453	2e-19
B2GV91	88	LYR motif-containing prot	yes	N/A	0.988	0.965	0.470	5e-17
Q5RES3	88	LYR motif-containing prot	yes	N/A	0.988	0.965	0.447	1e-16
Q9NU23	88	LYR motif-containing prot	yes	N/A	0.988	0.965	0.435	2e-16
Q32LM5	88	LYR motif-containing prot	yes	N/A	0.988	0.965	0.423	5e-16
B5XFA7	90	LYR motif-containing prot	N/A	N/A	0.965	0.922	0.433	1e-15
Q8R033	88	LYR motif-containing prot	yes	N/A	0.965	0.943	0.433	1e-15
Q5RIM0	88	LYR motif-containing prot	yes	N/A	0.953	0.931	0.426	3e-14

>sp|Q5PQ90|LYRM2_XENLA LYR motif-containing protein 2 OS=Xenopus laevis GN=lyrm2 PE=3 SV=1

 Score = 94.4 bits (233), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 39/86 (45%), Positives = 60/86 (69%)

Query: 1  MSSKLPKSTLNFRQFLLRAEVLGLYKTFLRTAKEIPDESSRKEMIDWIRSEFKHNKHLSD 60
          M S+LP + L  +QFL+R +VLGLY+  +R  ++IP  + R+ + DW R EF+ NK  S+
Sbjct: 1  MGSRLPPAALTLKQFLVRQQVLGLYRRIVRAVRQIPGAADRQYLQDWARDEFRRNKGASE 60

Query: 61 ETSIKMMIQYGQRSLKEVESSVSLIK 86
          E +I+MMI +GQR L+E+E ++ L K
Sbjct: 61 EIAIRMMISHGQRQLQELERALQLAK 86

Xenopus laevis (taxid: 8355)

>sp|B3DLF3|LYRM2_XENTR LYR motif-containing protein 2 OS=Xenopus tropicalis GN=lyrm2 PE=3 SV=1

 Score = 94.4 bits (233), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 39/86 (45%), Positives = 62/86 (72%)

Query: 1  MSSKLPKSTLNFRQFLLRAEVLGLYKTFLRTAKEIPDESSRKEMIDWIRSEFKHNKHLSD 60
          M S+LP + L  +QFL+R +VLGLY+  LR+ ++IPD + ++ M +W R EF+ NK  ++
Sbjct: 1  MGSRLPPAALTLKQFLVRQQVLGLYRKILRSVRQIPDAADQRYMQEWAREEFRRNKGATE 60

Query: 61 ETSIKMMIQYGQRSLKEVESSVSLIK 86
          E +I+MMI +GQR L+E+E ++ L K
Sbjct: 61 EIAIRMMITHGQRQLQELERALHLAK 86

Xenopus tropicalis (taxid: 8364)

>sp|B2GV91|LYRM2_RAT LYR motif-containing protein 2 OS=Rattus norvegicus GN=Lyrm2 PE=3 SV=1

 Score = 86.3 bits (212), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 40/85 (47%), Positives = 58/85 (68%)

Query: 2  SSKLPKSTLNFRQFLLRAEVLGLYKTFLRTAKEIPDESSRKEMIDWIRSEFKHNKHLSDE 61
          +S+LP +TL  +QF+ R +VL LY+  LR  K+IP +S RK + DW R EFK NK  ++E
Sbjct: 3  ASRLPPATLTLKQFMRRQQVLLLYRKILRAIKQIPSDSDRKYLQDWAREEFKRNKSATEE 62

Query: 62 TSIKMMIQYGQRSLKEVESSVSLIK 86
           +I+MMI  G   LKE+E +++L K
Sbjct: 63 DTIRMMITQGNMQLKELERTLALAK 87

Rattus norvegicus (taxid: 10116)

>sp|Q5RES3|LYRM2_PONAB LYR motif-containing protein 2 OS=Pongo abelii GN=LYRM2 PE=3 SV=1

 Score = 85.5 bits (210), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 38/85 (44%), Positives = 60/85 (70%)

Query: 2  SSKLPKSTLNFRQFLLRAEVLGLYKTFLRTAKEIPDESSRKEMIDWIRSEFKHNKHLSDE 61
          +S+LP +TL  +QF+ R +VL LY+  L+T +++P++S RK + DW R EFK NK  ++E
Sbjct: 3  ASRLPPATLTLKQFVRRQQVLLLYRRILQTIRQVPNDSDRKYLKDWAREEFKRNKSATEE 62

Query: 62 TSIKMMIQYGQRSLKEVESSVSLIK 86
           +I+MMI  G   LKE+E +++L K
Sbjct: 63 DTIRMMITQGNMQLKELEKTLALAK 87

Pongo abelii (taxid: 9601)

>sp|Q9NU23|LYRM2_HUMAN LYR motif-containing protein 2 OS=Homo sapiens GN=LYRM2 PE=1 SV=1

 Score = 84.3 bits (207), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 37/85 (43%), Positives = 60/85 (70%)

Query: 2  SSKLPKSTLNFRQFLLRAEVLGLYKTFLRTAKEIPDESSRKEMIDWIRSEFKHNKHLSDE 61
          +S+LP +TL  +QF+ R +VL LY+  L+T +++P++S RK + DW R EF+ NK  ++E
Sbjct: 3  ASRLPPATLTLKQFVRRQQVLLLYRRILQTIRQVPNDSDRKYLKDWAREEFRRNKSATEE 62

Query: 62 TSIKMMIQYGQRSLKEVESSVSLIK 86
           +I+MMI  G   LKE+E +++L K
Sbjct: 63 DTIRMMITQGNMQLKELEKTLALAK 87

Homo sapiens (taxid: 9606)

>sp|Q32LM5|LYRM2_BOVIN LYR motif-containing protein 2 OS=Bos taurus GN=LYRM2 PE=3 SV=1

 Score = 82.8 bits (203), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 36/85 (42%), Positives = 59/85 (69%)

Query: 2  SSKLPKSTLNFRQFLLRAEVLGLYKTFLRTAKEIPDESSRKEMIDWIRSEFKHNKHLSDE 61
          +S+LP +TL  +QF+ R +VL LY+  L+  +++P++S RK + DW R EFK NK  ++E
Sbjct: 3  TSRLPPATLTLKQFMRRQQVLLLYRRILQAIRQVPNDSDRKYLKDWAREEFKRNKSATEE 62

Query: 62 TSIKMMIQYGQRSLKEVESSVSLIK 86
           +I+MMI  G   LKE+E +++L +
Sbjct: 63 DTIRMMITQGNMQLKELEKTLALAR 87

Bos taurus (taxid: 9913)

>sp|B5XFA7|LYRM2_SALSA LYR motif-containing protein 2 OS=Salmo salar GN=lyrm2 PE=3 SV=1

 Score = 82.0 bits (201), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 36/83 (43%), Positives = 56/83 (67%)

Query: 2  SSKLPKSTLNFRQFLLRAEVLGLYKTFLRTAKEIPDESSRKEMIDWIRSEFKHNKHLSDE 61
          SS+LP S L  +QF+ R +VL LY+  +RT +++PDE  RK + DW R EFK NK+ +++
Sbjct: 3  SSRLPASALTLKQFIQRQKVLSLYRNMMRTIRQVPDEGDRKYLRDWARDEFKRNKNSTNQ 62

Query: 62 TSIKMMIQYGQRSLKEVESSVSL 84
           +I+MMI        E++SS++L
Sbjct: 63 DAIRMMITQANMHHDELQSSLAL 85

Salmo salar (taxid: 8030)

>sp|Q8R033|LYRM2_MOUSE LYR motif-containing protein 2 OS=Mus musculus GN=Lyrm2 PE=2 SV=1

 Score = 82.0 bits (201), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 36/83 (43%), Positives = 56/83 (67%)

Query: 2  SSKLPKSTLNFRQFLLRAEVLGLYKTFLRTAKEIPDESSRKEMIDWIRSEFKHNKHLSDE 61
          +S+LP + L  +QF+ R +VL LY+  LR  +++P +S RK + DW R EFK NK  ++E
Sbjct: 3  ASRLPPAALTLKQFMRRQQVLLLYRKILRAIRQVPSDSDRKYLQDWAREEFKRNKSATEE 62

Query: 62 TSIKMMIQYGQRSLKEVESSVSL 84
           +I+MMI  G   LKE+E +++L
Sbjct: 63 DTIRMMITQGNMQLKELERTLAL 85

Mus musculus (taxid: 10090)

>sp|Q5RIM0|LYRM2_DANRE LYR motif-containing protein 2 OS=Danio rerio GN=lyrm2 PE=3 SV=1

 Score = 77.0 bits (188), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 53/82 (64%)

Query: 3  SKLPKSTLNFRQFLLRAEVLGLYKTFLRTAKEIPDESSRKEMIDWIRSEFKHNKHLSDET 62
          S+LP + L+ +QFL R +VL LY+   RT + +P ES RK + DW R EF+ NK  +D+ 
Sbjct: 4  SRLPPAALSLKQFLQRQKVLCLYRDLQRTIRRVPHESDRKYLRDWARDEFRRNKSNTDQD 63

Query: 63 SIKMMIQYGQRSLKEVESSVSL 84
          +I+MMI      L+E+  S++L
Sbjct: 64 AIRMMISQAHNHLEELRRSLAL 85

Danio rerio (taxid: 7955)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	86
118793130	101	AGAP011816-PA [Anopheles gambiae str. PE	0.953	0.811	0.524	1e-20
157136132	103	hypothetical protein AaeL_AAEL013479 [Ae	0.953	0.796	0.548	1e-20
357614214	87	hypothetical protein KGM_12105 [Danaus p	0.976	0.965	0.511	1e-19
170049102	94	LYR motif-containing protein 2 [Culex qu	0.953	0.872	0.512	1e-18
284413696	87	LYR motif-containing protein 2 [Xenopus	1.0	0.988	0.453	8e-18
284413694	87	LYR motif-containing protein 2 [Xenopus	1.0	0.988	0.453	8e-18
195485635	90	GE12382 [Drosophila yakuba] gi|194177271	0.953	0.911	0.5	9e-18
161076556	90	CG34229 [Drosophila melanogaster] gi|194	0.953	0.911	0.487	2e-17
195441907	91	GK17885 [Drosophila willistoni] gi|19416	0.953	0.901	0.475	3e-16
195380950	93	GJ21465 [Drosophila virilis] gi|19414401	0.953	0.881	0.475	4e-16

>gi|118793130|ref|XP_320699.3| AGAP011816-PA [Anopheles gambiae str. PEST] gi|116117231|gb|EAA00691.3| AGAP011816-PA [Anopheles gambiae str. PEST]

 Score =  103 bits (257), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 43/82 (52%), Positives = 68/82 (82%)

Query: 3  SKLPKSTLNFRQFLLRAEVLGLYKTFLRTAKEIPDESSRKEMIDWIRSEFKHNKHLSDET 62
          SKLPK+ L+ +QF+LR EVL LY+T  RT +++PD SSR+E+ DW R++F++N++ +DE 
Sbjct: 2  SKLPKAALSLKQFMLRQEVLKLYRTIFRTIRQVPDASSRRELRDWARADFRNNRNQTDEL 61

Query: 63 SIKMMIQYGQRSLKEVESSVSL 84
          +IKM++Q+G RSLKE+++S+ L
Sbjct: 62 AIKMLLQHGNRSLKELQTSLEL 83

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157136132|ref|XP_001663667.1| hypothetical protein AaeL_AAEL013479 [Aedes aegypti] gi|157167830|ref|XP_001662421.1| hypothetical protein AaeL_AAEL012328 [Aedes aegypti] gi|108870032|gb|EAT34257.1| AAEL013479-PA [Aedes aegypti] gi|108871279|gb|EAT35504.1| AAEL012328-PA [Aedes aegypti]

 Score =  103 bits (257), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 45/82 (54%), Positives = 66/82 (80%)

Query: 3  SKLPKSTLNFRQFLLRAEVLGLYKTFLRTAKEIPDESSRKEMIDWIRSEFKHNKHLSDET 62
          SKLPKS L+ +QF+LR EVL LY+T  RT +++PDESSR+E+  W RS+F+ NKH ++E 
Sbjct: 2  SKLPKSALSLKQFMLRQEVLKLYRTIFRTIRQVPDESSRQELRQWARSDFRANKHQTEEL 61

Query: 63 SIKMMIQYGQRSLKEVESSVSL 84
          +IKM++Q+  RSLKE+++S+ L
Sbjct: 62 AIKMLMQHANRSLKELQTSLGL 83

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357614214|gb|EHJ68968.1| hypothetical protein KGM_12105 [Danaus plexippus]

 Score =  100 bits (249), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 43/84 (51%), Positives = 66/84 (78%)

Query: 1  MSSKLPKSTLNFRQFLLRAEVLGLYKTFLRTAKEIPDESSRKEMIDWIRSEFKHNKHLSD 60
          M+SKLPK+TLN +QFLLR EVL LY+   +T +++PDE +R E+ DW R +F++NKH  D
Sbjct: 1  MASKLPKTTLNLKQFLLRQEVLKLYRDIFKTLRKVPDEKTRLELRDWARVDFRNNKHHKD 60

Query: 61 ETSIKMMIQYGQRSLKEVESSVSL 84
          E+ IK M+ YG++SLK+++ +++L
Sbjct: 61 ESVIKSMLHYGKKSLKDLQRTLAL 84

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170049102|ref|XP_001870880.1| LYR motif-containing protein 2 [Culex quinquefasciatus] gi|167871015|gb|EDS34398.1| LYR motif-containing protein 2 [Culex quinquefasciatus]

 Score = 97.1 bits (240), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 42/82 (51%), Positives = 65/82 (79%)

Query: 3  SKLPKSTLNFRQFLLRAEVLGLYKTFLRTAKEIPDESSRKEMIDWIRSEFKHNKHLSDET 62
          SKLPK+ L+ +QF+LR EVL LY+T  RT +++PD SSR E+ +W RS+F+ N++ ++E 
Sbjct: 2  SKLPKAALSLKQFMLRQEVLKLYRTIFRTIRQVPDASSRHELREWARSDFRANRNQTEEL 61

Query: 63 SIKMMIQYGQRSLKEVESSVSL 84
          +IKM+IQ+  RSLKE+++S+ L
Sbjct: 62 AIKMLIQHANRSLKELQTSLEL 83

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|284413696|ref|NP_001165156.1| LYR motif-containing protein 2 [Xenopus laevis] gi|82179700|sp|Q5PQ90.1|LYRM2_XENLA RecName: Full=LYR motif-containing protein 2 gi|56269105|gb|AAH87314.1| Lyrm2 protein [Xenopus laevis]

 Score = 94.4 bits (233), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 39/86 (45%), Positives = 60/86 (69%)

Query: 1  MSSKLPKSTLNFRQFLLRAEVLGLYKTFLRTAKEIPDESSRKEMIDWIRSEFKHNKHLSD 60
          M S+LP + L  +QFL+R +VLGLY+  +R  ++IP  + R+ + DW R EF+ NK  S+
Sbjct: 1  MGSRLPPAALTLKQFLVRQQVLGLYRRIVRAVRQIPGAADRQYLQDWARDEFRRNKGASE 60

Query: 61 ETSIKMMIQYGQRSLKEVESSVSLIK 86
          E +I+MMI +GQR L+E+E ++ L K
Sbjct: 61 EIAIRMMISHGQRQLQELERALQLAK 86

Source: Xenopus laevis

Species: Xenopus laevis

Genus: Xenopus

Family: Pipidae

Order: Anura

Class: Amphibia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|284413694|ref|NP_001165155.1| LYR motif-containing protein 2 [Xenopus (Silurana) tropicalis] gi|221272053|sp|B3DLF3.1|LYRM2_XENTR RecName: Full=LYR motif-containing protein 2 gi|189441638|gb|AAI67424.1| LOC100170492 protein [Xenopus (Silurana) tropicalis] gi|189441640|gb|AAI67425.1| Unknown (protein for MGC:147907) [Xenopus (Silurana) tropicalis]

 Score = 94.4 bits (233), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 39/86 (45%), Positives = 62/86 (72%)

Query: 1  MSSKLPKSTLNFRQFLLRAEVLGLYKTFLRTAKEIPDESSRKEMIDWIRSEFKHNKHLSD 60
          M S+LP + L  +QFL+R +VLGLY+  LR+ ++IPD + ++ M +W R EF+ NK  ++
Sbjct: 1  MGSRLPPAALTLKQFLVRQQVLGLYRKILRSVRQIPDAADQRYMQEWAREEFRRNKGATE 60

Query: 61 ETSIKMMIQYGQRSLKEVESSVSLIK 86
          E +I+MMI +GQR L+E+E ++ L K
Sbjct: 61 EIAIRMMITHGQRQLQELERALHLAK 86

Source: Xenopus (Silurana) tropicalis

Species: Xenopus (Silurana) tropicalis

Genus: Xenopus

Family: Pipidae

Order: Anura

Class: Amphibia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|195485635|ref|XP_002091170.1| GE12382 [Drosophila yakuba] gi|194177271|gb|EDW90882.1| GE12382 [Drosophila yakuba]

 Score = 94.4 bits (233), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 41/82 (50%), Positives = 64/82 (78%)

Query: 3  SKLPKSTLNFRQFLLRAEVLGLYKTFLRTAKEIPDESSRKEMIDWIRSEFKHNKHLSDET 62
          SKLPK++L+ +QF+LR EVL LY+   RT +++PD++S+ E+  W R +F+ N+H SDE 
Sbjct: 2  SKLPKASLSLKQFMLRQEVLKLYREIFRTIRQVPDKNSQLELKSWARHDFQTNRHQSDEV 61

Query: 63 SIKMMIQYGQRSLKEVESSVSL 84
          +IKM+IQ+G+RSL E+ +S+ L
Sbjct: 62 AIKMLIQHGRRSLTELRTSLQL 83

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|161076556|ref|NP_001097276.1| CG34229 [Drosophila melanogaster] gi|194883887|ref|XP_001976028.1| GG20221 [Drosophila erecta] gi|195333517|ref|XP_002033437.1| GM21307 [Drosophila sechellia] gi|195582530|ref|XP_002081080.1| GD10816 [Drosophila simulans] gi|41616992|tpg|DAA02435.1| TPA_inf: HDC05859 [Drosophila melanogaster] gi|125660212|gb|ABN49334.1| IP17990p [Drosophila melanogaster] gi|157400291|gb|ABV53768.1| CG34229 [Drosophila melanogaster] gi|190659215|gb|EDV56428.1| GG20221 [Drosophila erecta] gi|194125407|gb|EDW47450.1| GM21307 [Drosophila sechellia] gi|194193089|gb|EDX06665.1| GD10816 [Drosophila simulans]

 Score = 93.2 bits (230), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 40/82 (48%), Positives = 64/82 (78%)

Query: 3  SKLPKSTLNFRQFLLRAEVLGLYKTFLRTAKEIPDESSRKEMIDWIRSEFKHNKHLSDET 62
          SKLPK++L+ +QF+LR EVL LY+   RT +++PD++S+ E+  W R +F+ N+H SDE 
Sbjct: 2  SKLPKASLSLKQFMLRQEVLKLYREIFRTIRQVPDKNSQLELKSWARHDFQTNRHQSDEV 61

Query: 63 SIKMMIQYGQRSLKEVESSVSL 84
          +IKM++Q+G+RSL E+ +S+ L
Sbjct: 62 AIKMLLQHGRRSLTELRTSLQL 83

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195441907|ref|XP_002068703.1| GK17885 [Drosophila willistoni] gi|194164788|gb|EDW79689.1| GK17885 [Drosophila willistoni]

 Score = 89.4 bits (220), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 39/82 (47%), Positives = 61/82 (74%)

Query: 3  SKLPKSTLNFRQFLLRAEVLGLYKTFLRTAKEIPDESSRKEMIDWIRSEFKHNKHLSDET 62
          SKLPK+ L+ +QF+LR EVL LY+   RT +++PD+ S+ E+  W R +F+ N+   DE 
Sbjct: 2  SKLPKAALSLKQFMLRQEVLKLYREIFRTIRQVPDKHSQMELKAWARHDFETNRQQCDEV 61

Query: 63 SIKMMIQYGQRSLKEVESSVSL 84
          +IKM+IQ+G+RSL E+++S+ L
Sbjct: 62 AIKMLIQHGRRSLTELKTSLQL 83

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195380950|ref|XP_002049219.1| GJ21465 [Drosophila virilis] gi|194144016|gb|EDW60412.1| GJ21465 [Drosophila virilis]

 Score = 88.6 bits (218), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 39/82 (47%), Positives = 61/82 (74%)

Query: 3  SKLPKSTLNFRQFLLRAEVLGLYKTFLRTAKEIPDESSRKEMIDWIRSEFKHNKHLSDET 62
          SKLPK  L+ +QF+LR EVL LY+   RT + +PD+ SR+E+ +W R +F+ N++  DE 
Sbjct: 2  SKLPKVALSLKQFMLRQEVLKLYREIWRTTRLVPDQHSRRELREWARHDFQANRNQDDEV 61

Query: 63 SIKMMIQYGQRSLKEVESSVSL 84
          +IKM++Q G+RSL E+++S+ L
Sbjct: 62 AIKMLLQSGRRSLTELQTSLEL 83

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	86
UNIPROTKB|E2R4P7	88	LYRM2 "Uncharacterized protein	0.988	0.965	0.458	5.3e-17
RGD|1597334	88	Lyrm2 "LYR motif containing 2"	0.988	0.965	0.470	6.7e-17
UNIPROTKB|Q9NU23	88	LYRM2 "LYR motif-containing pr	0.988	0.965	0.435	2.3e-16
UNIPROTKB|Q32LM5	88	LYRM2 "LYR motif-containing pr	0.988	0.965	0.423	6e-16
UNIPROTKB|F1S0C3	88	LYRM2 "Uncharacterized protein	0.988	0.965	0.411	7.7e-16
UNIPROTKB|E1C4T4	88	LYRM2 "Uncharacterized protein	0.988	0.965	0.423	1.3e-15
MGI|MGI:1917573	88	Lyrm2 "LYR motif containing 2"	0.965	0.943	0.433	1.6e-15
UNIPROTKB|Q9HD34	91	LYRM4 "LYR motif-containing pr	0.779	0.736	0.298	0.0001
MGI|MGI:2683538	91	Lyrm4 "LYR motif containing 4"	0.779	0.736	0.283	0.00013
UNIPROTKB|Q0VCG0	91	LYRM4 "LYR motif-containing pr	0.779	0.736	0.313	0.00017

UNIPROTKB|E2R4P7 LYRM2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 209 (78.6 bits), Expect = 5.3e-17, P = 5.3e-17
 Identities = 39/85 (45%), Positives = 59/85 (69%)

Query:     2 SSKLPKSTLNFRQFLLRAEVLGLYKTFLRTAKEIPDESSRKEMIDWIRSEFKHNKHLSDE 61
             +S+LP +TL  +QFL R +VL LY+  L+  +++PD+S RK + DW R EFK NK  ++E
Sbjct:     3 ASRLPPATLTLKQFLRRQQVLLLYRRILQAIRQVPDDSDRKYLKDWAREEFKRNKSATEE 62

Query:    62 TSIKMMIQYGQRSLKEVESSVSLIK 86
              +I+MMI  G   LKE+E +++L K
Sbjct:    63 DTIRMMITQGNMQLKELEKTLALAK 87

GO:0005739 "mitochondrion" evidence=IEA

RGD|1597334 Lyrm2 "LYR motif containing 2" [Rattus norvegicus (taxid:10116)]

 Score = 208 (78.3 bits), Expect = 6.7e-17, P = 6.7e-17
 Identities = 40/85 (47%), Positives = 58/85 (68%)

Query:     2 SSKLPKSTLNFRQFLLRAEVLGLYKTFLRTAKEIPDESSRKEMIDWIRSEFKHNKHLSDE 61
             +S+LP +TL  +QF+ R +VL LY+  LR  K+IP +S RK + DW R EFK NK  ++E
Sbjct:     3 ASRLPPATLTLKQFMRRQQVLLLYRKILRAIKQIPSDSDRKYLQDWAREEFKRNKSATEE 62

Query:    62 TSIKMMIQYGQRSLKEVESSVSLIK 86
              +I+MMI  G   LKE+E +++L K
Sbjct:    63 DTIRMMITQGNMQLKELERTLALAK 87

GO:0005739 "mitochondrion" evidence=IEA;ISO

UNIPROTKB|Q9NU23 LYRM2 "LYR motif-containing protein 2" [Homo sapiens (taxid:9606)]

 Score = 203 (76.5 bits), Expect = 2.3e-16, P = 2.3e-16
 Identities = 37/85 (43%), Positives = 60/85 (70%)

Query:     2 SSKLPKSTLNFRQFLLRAEVLGLYKTFLRTAKEIPDESSRKEMIDWIRSEFKHNKHLSDE 61
             +S+LP +TL  +QF+ R +VL LY+  L+T +++P++S RK + DW R EF+ NK  ++E
Sbjct:     3 ASRLPPATLTLKQFVRRQQVLLLYRRILQTIRQVPNDSDRKYLKDWAREEFRRNKSATEE 62

Query:    62 TSIKMMIQYGQRSLKEVESSVSLIK 86
              +I+MMI  G   LKE+E +++L K
Sbjct:    63 DTIRMMITQGNMQLKELEKTLALAK 87

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|Q32LM5 LYRM2 "LYR motif-containing protein 2" [Bos taurus (taxid:9913)]

 Score = 199 (75.1 bits), Expect = 6.0e-16, P = 6.0e-16
 Identities = 36/85 (42%), Positives = 59/85 (69%)

Query:     2 SSKLPKSTLNFRQFLLRAEVLGLYKTFLRTAKEIPDESSRKEMIDWIRSEFKHNKHLSDE 61
             +S+LP +TL  +QF+ R +VL LY+  L+  +++P++S RK + DW R EFK NK  ++E
Sbjct:     3 TSRLPPATLTLKQFMRRQQVLLLYRRILQAIRQVPNDSDRKYLKDWAREEFKRNKSATEE 62

Query:    62 TSIKMMIQYGQRSLKEVESSVSLIK 86
              +I+MMI  G   LKE+E +++L +
Sbjct:    63 DTIRMMITQGNMQLKELEKTLALAR 87

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|F1S0C3 LYRM2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 198 (74.8 bits), Expect = 7.7e-16, P = 7.7e-16
 Identities = 35/85 (41%), Positives = 60/85 (70%)

Query:     2 SSKLPKSTLNFRQFLLRAEVLGLYKTFLRTAKEIPDESSRKEMIDWIRSEFKHNKHLSDE 61
             +S+LP +TL  +QF+ R +VL LY+  L+  +++P++S R+ + DW R EFK NK+ ++E
Sbjct:     3 TSRLPPATLTLKQFMRRQQVLLLYRRILQAIRQVPNDSDRRYLKDWAREEFKRNKNATEE 62

Query:    62 TSIKMMIQYGQRSLKEVESSVSLIK 86
              +I+MMI  G   LKE+E +++L +
Sbjct:    63 DTIRMMITQGNMQLKELEKTLALAR 87

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|E1C4T4 LYRM2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 196 (74.1 bits), Expect = 1.3e-15, P = 1.3e-15
 Identities = 36/85 (42%), Positives = 56/85 (65%)

Query:     2 SSKLPKSTLNFRQFLLRAEVLGLYKTFLRTAKEIPDESSRKEMIDWIRSEFKHNKHLSDE 61
             +S+LP STL  RQFL R +VL LY+  LR  +++P E+ R+ +  W R EF+ NK  ++E
Sbjct:     3 ASRLPPSTLTLRQFLRRQQVLQLYRRILRALRDVPAEADRRHLQQWAREEFRRNKDATEE 62

Query:    62 TSIKMMIQYGQRSLKEVESSVSLIK 86
              +I+MMI  G   L+E++ ++ L K
Sbjct:    63 DAIRMMITQGHMQLRELQKALKLAK 87

GO:0005739 "mitochondrion" evidence=IEA

MGI|MGI:1917573 Lyrm2 "LYR motif containing 2" [Mus musculus (taxid:10090)]

 Score = 195 (73.7 bits), Expect = 1.6e-15, P = 1.6e-15
 Identities = 36/83 (43%), Positives = 56/83 (67%)

Query:     2 SSKLPKSTLNFRQFLLRAEVLGLYKTFLRTAKEIPDESSRKEMIDWIRSEFKHNKHLSDE 61
             +S+LP + L  +QF+ R +VL LY+  LR  +++P +S RK + DW R EFK NK  ++E
Sbjct:     3 ASRLPPAALTLKQFMRRQQVLLLYRKILRAIRQVPSDSDRKYLQDWAREEFKRNKSATEE 62

Query:    62 TSIKMMIQYGQRSLKEVESSVSL 84
              +I+MMI  G   LKE+E +++L
Sbjct:    63 DTIRMMITQGNMQLKELERTLAL 85

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=IDA

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q9HD34 LYRM4 "LYR motif-containing protein 4" [Homo sapiens (taxid:9606)]

 Score = 93 (37.8 bits), Expect = 0.00010, P = 0.00010
 Identities = 20/67 (29%), Positives = 34/67 (50%)

Query:    18 RAEVLGLYKTFLRTAKEIPDESSRKEMIDWIRSEFKHNKHLSDETSIKMMIQYGQRSLKE 77
             RA+VL LY+  LR +K     + R   +  IR  F+ NK++ D   I+ ++   +R L  
Sbjct:     6 RAQVLSLYRAMLRESKRFSAYNYRTYAVRRIRDAFRENKNVKDPVEIQTLVNKAKRDLGV 65

Query:    78 VESSVSL 84
             +   V +
Sbjct:    66 IRRQVHI 72

GO:0005739 "mitochondrion" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

MGI|MGI:2683538 Lyrm4 "LYR motif containing 4" [Mus musculus (taxid:10090)]

 Score = 92 (37.4 bits), Expect = 0.00013, P = 0.00013
 Identities = 19/67 (28%), Positives = 35/67 (52%)

Query:    18 RAEVLGLYKTFLRTAKEIPDESSRKEMIDWIRSEFKHNKHLSDETSIKMMIQYGQRSLKE 77
             RA+VL LY+  +R +K     + R   +  IR  F+ NK++ D   I+ ++   +R L+ 
Sbjct:     6 RAQVLDLYRAMMRESKHFSAYNYRMYAVRRIRDAFRENKNVKDPVEIQALVNKAKRDLEI 65

Query:    78 VESSVSL 84
             +   V +
Sbjct:    66 IRRQVHI 72

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q0VCG0 LYRM4 "LYR motif-containing protein 4" [Bos taurus (taxid:9913)]

 Score = 91 (37.1 bits), Expect = 0.00017, P = 0.00017
 Identities = 21/67 (31%), Positives = 34/67 (50%)

Query:    18 RAEVLGLYKTFLRTAKEIPDESSRKEMIDWIRSEFKHNKHLSDETSIKMMIQYGQRSLKE 77
             RA+VL LY+  LR +K     + R   I  IR  F+ NK++ D   I+ ++   +R L  
Sbjct:     6 RAQVLDLYRAMLRESKRFGAYNYRTYAIRRIRDAFRENKNVKDPVEIQALVNKAKRDLGI 65

Query:    78 VESSVSL 84
             +   V +
Sbjct:    66 IRRQVHI 72

GO:0005739 "mitochondrion" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5RES3	LYRM2_PONAB	No assigned EC number	0.4470	0.9883	0.9659	yes	N/A
B3DLF3	LYRM2_XENTR	No assigned EC number	0.4534	1.0	0.9885	yes	N/A
Q9NU23	LYRM2_HUMAN	No assigned EC number	0.4352	0.9883	0.9659	yes	N/A
Q8R033	LYRM2_MOUSE	No assigned EC number	0.4337	0.9651	0.9431	yes	N/A
B2GV91	LYRM2_RAT	No assigned EC number	0.4705	0.9883	0.9659	yes	N/A
Q5RIM0	LYRM2_DANRE	No assigned EC number	0.4268	0.9534	0.9318	yes	N/A
Q32LM5	LYRM2_BOVIN	No assigned EC number	0.4235	0.9883	0.9659	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	86
pfam13232	61	pfam13232, Complex1_LYR_1, Complex1_LYR-like	3e-15
pfam05347	59	pfam05347, Complex1_LYR, Complex 1 protein (LYR fa	6e-15

>gnl|CDD|221996 pfam13232, Complex1_LYR_1, Complex1_LYR-like

 Score = 63.0 bits (154), Expect = 3e-15
 Identities = 22/61 (36%), Positives = 39/61 (63%)

Query: 19 AEVLGLYKTFLRTAKEIPDESSRKEMIDWIRSEFKHNKHLSDETSIKMMIQYGQRSLKEV 78
           EVL LY+  LR A++ PD + R+ +   IR EF+ NK L+D   I+ +++ G++ L+ +
Sbjct: 1  KEVLSLYRQLLRAARKFPDYNFREYIRRRIRDEFRKNKDLTDPEKIEKLLKEGKKQLELL 60

Query: 79 E 79
          +
Sbjct: 61 K 61

This is a family of proteins carrying the LYR motif of family Complex1_LYR, pfam05347, likely to be involved in Fe-S cluster biogenesis in mitochondria. Length = 61

>gnl|CDD|203236 pfam05347, Complex1_LYR, Complex 1 protein (LYR family)

 Score = 62.2 bits (152), Expect = 6e-15
 Identities = 22/59 (37%), Positives = 38/59 (64%)

Query: 19 AEVLGLYKTFLRTAKEIPDESSRKEMIDWIRSEFKHNKHLSDETSIKMMIQYGQRSLKE 77
           EVL LY+  LR A++ PD ++R+     IR EF+ NK+L+D   I+ +++ G++ L+ 
Sbjct: 1  KEVLSLYRQLLREARKFPDYNAREYFRRRIRDEFRKNKNLTDPEKIEALLKEGKKQLEV 59

Proteins in this family have been identified as a component of the higher eukaryotic NADH complex. In Saccharomyces cerevisiae, the Isd11 protein has been shown to play a role in Fe/S cluster biogenesis in mitochondria. We have named this family LYR after a highly conserved tripeptide motif close to the N-terminus of these proteins. Length = 59

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	86
KOG3801|consensus	94		99.87
PF13232	61	Complex1_LYR_1: Complex1_LYR-like	99.8
PF05347	59	Complex1_LYR: Complex 1 protein (LYR family); Inte	99.78
KOG3426|consensus	124		99.52
KOG4620|consensus	80		99.46
KOG4100|consensus	125		98.76
KOG3466|consensus	157		98.58
PF13233	104	Complex1_LYR_2: Complex1_LYR-like	98.43
PF04716	57	ETC_C1_NDUFA5: ETC complex I subunit conserved reg	95.05

>KOG3801|consensus

Probab=99.87  E-value=6.5e-22  Score=118.55  Aligned_cols=70  Identities=26%  Similarity=0.453  Sum_probs=67.5

Q ss_pred             hhHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy4709          16 LLRAEVLGLYKTFLRTAKEIPDESSRKEMIDWIRSEFKHNKHLSDETSIKMMIQYGQRSLKEVESSVSLI   85 (86)
Q Consensus        16 ~~r~~vl~LYR~~LR~~~~~~~~~~r~~~~~~iR~eF~~nk~~td~~~i~~ll~~g~~~l~~l~~~~~~~   85 (86)
                      +.+++|++|||.+||.++.||+||+|+|+.+++|+.|++|++++||.+|..++++|+++|+.+++|+.|.
T Consensus         4 ~sr~qvlsLyr~~lr~s~qfp~YNyReY~~RrtRD~Fr~Nkn~~Dp~e~~~l~~eakk~LevikRQ~ii~   73 (94)
T KOG3801|consen    4 VSRRQVLSLYRNLLRESKQFPQYNYREYFQRRTRDTFRANKNVCDPAEIKKLYKEAKKQLEVIKRQSIIG   73 (94)
T ss_pred             ccHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4578999999999999999999999999999999999999999999999999999999999999999874

>PF13232 Complex1_LYR_1: Complex1_LYR-like

Probab=99.80  E-value=1.4e-19  Score=101.97  Aligned_cols=61  Identities=31%  Similarity=0.569  Sum_probs=58.4

Q ss_pred             HHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHH
Q psy4709          19 AEVLGLYKTFLRTAKEIPDESSRKEMIDWIRSEFKHNKHLSDETSIKMMIQYGQRSLKEVE   79 (86)
Q Consensus        19 ~~vl~LYR~~LR~~~~~~~~~~r~~~~~~iR~eF~~nk~~td~~~i~~ll~~g~~~l~~l~   79 (86)
                      ++||+|||.+||.++.||+++.|+++..+||++|+.|+++|||+.|..++..|+..|..|+
T Consensus         1 ~~vL~LYR~lLR~~~~~~~~~~r~~~~~~ir~~Fr~~~~~td~~~i~~~l~~~~~~L~~l~   61 (61)
T PF13232_consen    1 QQVLSLYRQLLREASKFPDYNFRSYFRRRIRDRFRRNKNVTDPEKIAKLLKEGRKELELLR   61 (61)
T ss_pred             ChHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHcC
Confidence            3799999999999999999999999999999999999999999999999999999999874

>PF05347 Complex1_LYR: Complex 1 protein (LYR family); InterPro: IPR008011 This family of short proteins includes proteins from the NADH-ubiquinone oxidoreductase complex I

Probab=99.78  E-value=8.4e-19  Score=97.83  Aligned_cols=59  Identities=34%  Similarity=0.621  Sum_probs=55.7

Q ss_pred             HHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHH
Q psy4709          19 AEVLGLYKTFLRTAKEIPDESSRKEMIDWIRSEFKHNKHLSDETSIKMMIQYGQRSLKE   77 (86)
Q Consensus        19 ~~vl~LYR~~LR~~~~~~~~~~r~~~~~~iR~eF~~nk~~td~~~i~~ll~~g~~~l~~   77 (86)
                      ++||+|||.+||+++.||+++.+.++..+||++|++|+++|||..|+.++..|+..|++
T Consensus         1 q~vl~LYR~lLR~~~~~~~~~~r~~~~~~iR~~Fr~n~~~~d~~~I~~~l~~g~~~l~~   59 (59)
T PF05347_consen    1 QRVLSLYRQLLRAARSFPDDSEREYIRAEIRQEFRKNRNETDPEKIEELLKKGEEELEM   59 (59)
T ss_pred             ChHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcC
Confidence            37999999999999999998889999999999999999999999999999999998863

The family includes the B14 subunit from bovine NADH-ubiquinone oxidoreductase B14 subunit Q02366 from SWISSPROT, and the B22 subunit from the human enzyme Q9Y6M9 from SWISSPROT. The family has been named LYR after a highly conserved tripeptide motif close to the N terminus of these proteins. Members of this family also found in yeast which do contain this complex. In these organisms they are believed to be be required for iron-sulphur custer biogenesis.

>KOG3426|consensus

Probab=99.52  E-value=3.8e-14  Score=88.28  Aligned_cols=79  Identities=27%  Similarity=0.429  Sum_probs=69.5

Q ss_pred             CCCCCCCccChhhhhhHHHHHHHHHHHHHHhhCCCC-----hhHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHH
Q psy4709           2 SSKLPKSTLNFRQFLLRAEVLGLYKTFLRTAKEIPD-----ESSRKEMIDWIRSEFKHNKHLSDETSIKMMIQYGQRSLK   76 (86)
Q Consensus         2 ~~~l~~~~~s~~~~~~r~~vl~LYR~~LR~~~~~~~-----~~~r~~~~~~iR~eF~~nk~~td~~~i~~ll~~g~~~l~   76 (86)
                      |.++++|+.|....+.|++|+.|||.+.|+...+-+     +..-+.++..||++|++|.++|||..|+.|+.+|..+|+
T Consensus         7 av~~v~Pi~S~n~~EARrrvl~~yra~~R~iP~~~~dy~L~dm~~~~~R~~ir~qf~kn~hvTD~rViDlLV~kg~~elk   86 (124)
T KOG3426|consen    7 AVKIVVPINSANLTEARRRVLDLYRAWYRSIPTIVDDYNLQDMTVSQLRDKIREQFRKNAHVTDPRVIDLLVIKGMEELK   86 (124)
T ss_pred             hHhhcCCCccCcHHHHHHHHHHHHHHHHHhcChHHHhcCCcccCHHHHHHHHHHHHHhcCCcCCchhhhHHHHhhHHHHH
Confidence            678899999999999999999999999997765432     123478999999999999999999999999999999999


Q ss_pred             HHHH
Q psy4709          77 EVES   80 (86)
Q Consensus        77 ~l~~   80 (86)
                      ++..
T Consensus        87 eiv~   90 (124)
T KOG3426|consen   87 EIVD   90 (124)
T ss_pred             HHHH
Confidence            8764

>KOG4620|consensus

Probab=99.46  E-value=6.8e-13  Score=76.81  Aligned_cols=66  Identities=27%  Similarity=0.507  Sum_probs=57.4

Q ss_pred             hhhhHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhCCCC--CHHHHHHHHHHHHHHHHHHHH
Q psy4709          14 QFLLRAEVLGLYKTFLRTAKEIPDESSRKEMIDWIRSEFKHNKHLS--DETSIKMMIQYGQRSLKEVES   80 (86)
Q Consensus        14 ~~~~r~~vl~LYR~~LR~~~~~~~~~~r~~~~~~iR~eF~~nk~~t--d~~~i~~ll~~g~~~l~~l~~   80 (86)
                      ...++++||+|||++||+++..|..+. .-|..+|++||++|.+++  |.-.|+.|+..|+++++.+..
T Consensus         4 lSgLQrqVlhlYR~~lraa~~Kp~~~~-~~~m~fvh~EFrk~~~lpr~Df~~IEhLlRvG~rq~~~~s~   71 (80)
T KOG4620|consen    4 LSGLQRQVLHLYRDLLRAARGKPGAEA-RRWMAFVHAEFRKHAGLPRSDFLRIEHLLRVGRRQLQLLSS   71 (80)
T ss_pred             hhHHHHHHHHHHHHHHHHhcCCCchHH-HHHHHHHHHHHHHhcCCcHhHHHHHHHHHHHhHHHHHHhcC
Confidence            456789999999999999999998655 456779999999999995  778999999999999987653

>KOG4100|consensus

Probab=98.76  E-value=1e-07  Score=59.74  Aligned_cols=64  Identities=20%  Similarity=0.297  Sum_probs=57.4

Q ss_pred             HHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHhhhh
Q psy4709          19 AEVLGLYKTFLRTAKEIPDESSRKEMIDWIRSEFKHNKHLSDETSIKMMIQYGQRSLKEVESSVSL   84 (86)
Q Consensus        19 ~~vl~LYR~~LR~~~~~~~~~~r~~~~~~iR~eF~~nk~~td~~~i~~ll~~g~~~l~~l~~~~~~   84 (86)
                      ..|.-|||++||..+-+|. ..|...=++|++||+.|+++ +|..+..++.++++-...|..|.+.
T Consensus        10 ~rvrlLYkriLrlHr~lp~-~~R~lGD~YVkdEFrrHk~v-np~~~~~FlteW~~Ya~~l~qql~~   73 (125)
T KOG4100|consen   10 PRVRLLYKRILRLHRGLPA-ELRALGDQYVKDEFRRHKTV-NPLEAQGFLTEWERYAVALSQQLSS   73 (125)
T ss_pred             chHHHHHHHHHHHHccCCh-HHHHHHHHHHHHHHHHhccC-ChHHHHHHHHHHHHHHHHHHHHhhh
Confidence            3566799999999999996 67888889999999999999 8999999999999999999888764

>KOG3466|consensus

Probab=98.58  E-value=1.5e-07  Score=60.90  Aligned_cols=67  Identities=24%  Similarity=0.245  Sum_probs=55.8

Q ss_pred             hhhhhhHHHHHHHHHHHHHHhhCCCChh-HHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHH
Q psy4709          12 FRQFLLRAEVLGLYKTFLRTAKEIPDES-SRKEMIDWIRSEFKHNKHLSDETSIKMMIQYGQRSLKEVE   79 (86)
Q Consensus        12 ~~~~~~r~~vl~LYR~~LR~~~~~~~~~-~r~~~~~~iR~eF~~nk~~td~~~i~~ll~~g~~~l~~l~   79 (86)
                      .....++++|++|||++||..-.|-+.. .-.|..-.||..|+.|++ .|..++..||+.|+.+|-+.+
T Consensus         7 ~~~lshkqkV~rLYKRaLR~lenWy~~rn~yRy~ac~~RARFden~~-kD~~k~~~LLa~ge~E~w~~r   74 (157)
T KOG3466|consen    7 ARRLSHKQKVRRLYKRALRDLENWYVHRNIYRYQACIIRARFDENDE-KDVDKAIRLLAEGERELWEWR   74 (157)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhhhhhh-hhHHHHHHHHHHHHHHHHhhc
Confidence            3445669999999999999998887632 235677789999999998 999999999999999997754

>PF13233 Complex1_LYR_2: Complex1_LYR-like

Probab=98.43  E-value=1.5e-06  Score=53.15  Aligned_cols=62  Identities=26%  Similarity=0.426  Sum_probs=52.7

Q ss_pred             HHHHHHHHHHHhhCCCChhH-------HHHHHHHH----HHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHhh
Q psy4709          21 VLGLYKTFLRTAKEIPDESS-------RKEMIDWI----RSEFKHNKHLSDETSIKMMIQYGQRSLKEVESSV   82 (86)
Q Consensus        21 vl~LYR~~LR~~~~~~~~~~-------r~~~~~~i----R~eF~~nk~~td~~~i~~ll~~g~~~l~~l~~~~   82 (86)
                      |++|||.+||+.+.+|....       +..+..+|    +++|+.|.+.+|+......+..+++-+..+..+-
T Consensus         1 V~~lYR~lLRel~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ef~~~~~~~~~~~~~~~~~~~~~y~~~L~~qr   73 (104)
T PF13233_consen    1 VLSLYRSLLRELRRYPRRSKIHQLKAPRSPGDQYVLEQARAEFRRHKSANDEEEAQEFLQEWENYATFLKNQR   73 (104)
T ss_pred             ChHHHHHHHHHHHhhcchhhhhhhhchhHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHH
Confidence            68999999999999875321       15677889    9999999999989999999999999998888765

>PF04716 ETC_C1_NDUFA5: ETC complex I subunit conserved region; InterPro: IPR006806 This is a family of eukaryotic NADH-ubiquinone oxidoreductase subunits (1

Probab=95.05  E-value=0.25  Score=27.36  Aligned_cols=52  Identities=23%  Similarity=0.342  Sum_probs=44.0

Q ss_pred             hHHHHHHHHHHHHHHhhCCCCh-hHHHHHHHHHHHHHHhhCCCCCHHHHHHHH
Q psy4709          17 LRAEVLGLYKTFLRTAKEIPDE-SSRKEMIDWIRSEFKHNKHLSDETSIKMMI   68 (86)
Q Consensus        17 ~r~~vl~LYR~~LR~~~~~~~~-~~r~~~~~~iR~eF~~nk~~td~~~i~~ll   68 (86)
                      .+.....||.+.|+....+|.. .+|.+.=.-+++.+.--....|.++|+..|
T Consensus         3 pr~~L~~lY~~~L~~L~~~P~~a~YR~~tE~it~~Rl~iv~~~~d~~~iE~~i   55 (57)
T PF04716_consen    3 PREALISLYNKTLKALKKIPEDAAYRQYTEAITKHRLKIVEEEEDIEKIEKKI   55 (57)
T ss_pred             hHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHccccHHHHHHHh
Confidence            4667899999999999999973 578888888888888777889998888765

6.5.3 from EC) (1.6.99.3 from EC) from complex I of the electron transport chain initially identified in Neurospora crassa as a 29.9 kDa protein. The conserved region is found at the N terminus of the member proteins [].; GO: 0016651 oxidoreductase activity, acting on NADH or NADPH, 0022904 respiratory electron transport chain, 0005743 mitochondrial inner membrane

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	86
4b6x_A	90	AVRRPS4, avirulence protein; toxin, type 3 secrete	87.59

>4b6x_A AVRRPS4, avirulence protein; toxin, type 3 secreted effector; 2.20A {Pseudomonas syringae PV}

Probab=87.59  E-value=2.3  Score=24.45  Aligned_cols=43  Identities=9%  Similarity=0.261  Sum_probs=37.6

Q ss_pred             HHHHHHHHHHHHHhhCCCCCHHHH---HHHHHHHHHHHHHHHHhhh
Q psy4709          41 RKEMIDWIRSEFKHNKHLSDETSI---KMMIQYGQRSLKEVESSVS   83 (86)
Q Consensus        41 r~~~~~~iR~eF~~nk~~td~~~i---~~ll~~g~~~l~~l~~~~~   83 (86)
                      ++.+++-+++|.....+..+|.+|   +.+|.+++..|..+.+++.
T Consensus        34 KQ~~i~~Lt~eLq~A~~eaNpaeIA~~~~~L~qAraDL~~l~r~~a   79 (90)
T 4b6x_A           34 KQLMVNNLTDELQDAIDEANPAEIANTSQQLRHARADLADLQRRFA   79 (90)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHccCHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence            467888999999999999999888   6899999999999988764

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00