Psyllid ID: psy4713

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100---
Protein Sequence
MTQPKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQNGLEMDKLLGATKYKEKYRAEMITWSEAERRKDNGCFIRSAIEMAHAMKKLLH
Secondary Structure (PSIPRED)
ccccEEEEEEEccccccHHHHHHHHHHHHccccEEEEEccHHHHHHHHHHHcccHHHHccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccccEEEEEEEccccccHHHHHHHHHHHHccccEEEEEEccHHHHHHHHHHcccHHHHHcccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
MTQPKLILLfsgkrksgkdFLTDYLLERIGSQHCAiirlsapikshwakQNGLEMDKLLGATKYKEKYRAEMITWSeaerrkdngcFIRSAIEMAHAMKKLLH
Flexible Loop (DISEMBL)
mtqpklillfsgkrksgkDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQNGLEMDKLLGATKYKEKYRAEMitwseaerrkdnGCFIRSAIEMAHAMKKLLH
Low Complexity Region (SEG)
MTQPKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQNGLEMDKLLGATKYKEKYRAEMITWSEAERRKDNGCFIRSAIEMAHAMKKLLH
Disordered region (IsUnstruct)
*****LILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQNGLEMDKLLGATKYKEKYRAEMITWSEAERRKDNGCFIRSAIE**********
Disordered Region (DISOPRED)
***PKLI*LFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQNGLEMDKLLGATKYKEKYRAEMITWSEAERRKDNGCFIRSAIEMAHA****L*
Disordered Region (DISEMBL)
MTQPKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQNGLEMDKLLGATKYKEKYRAEMITWSEAERRKDNGCFIRSAIEMAHAMKKLLH
Disordered Region (DISPRO)
*TQPKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQNGLEMDKLLGATKYKEKYRAEMITWSEAERRKDNGCFIRSAIEMAHAMKKLL*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTQPKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQNGLEMDKLLGATKYKEKYRAEMITWSEAERRKDNGCFIRSAIEMAHAMKKLLH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	103	2.2.26 [Sep-21-2011]
Q2KIU2	192	Phosphomevalonate kinase	yes	N/A	0.873	0.468	0.522	3e-23
Q29081	130	Phosphomevalonate kinase	no	N/A	0.873	0.692	0.511	6e-23
Q9D1G2	192	Phosphomevalonate kinase	yes	N/A	0.873	0.468	0.522	6e-23
Q15126	192	Phosphomevalonate kinase	yes	N/A	0.873	0.468	0.5	2e-22
Q9VIT2	189	Probable phosphomevalonat	yes	N/A	0.902	0.492	0.5	4e-20

>sp|Q2KIU2|PMVK_BOVIN Phosphomevalonate kinase OS=Bos taurus GN=PMVK PE=2 SV=3

 Score =  107 bits (266), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 47/90 (52%), Positives = 67/90 (74%)

Query: 4  PKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQNGLEMDKLLGATK 63
          P L+LLFSGKRKSGKDF+T+ L  R+G+  CAI+RLS P+K  +A+++GL+  +L+ A+ 
Sbjct: 8  PGLVLLFSGKRKSGKDFVTEALQSRLGADVCAILRLSGPLKEQYAQEHGLDFQRLMDAST 67

Query: 64 YKEKYRAEMITWSEAERRKDNGCFIRSAIE 93
          YKE YR++MI W E +R+ D G F R  +E
Sbjct: 68 YKEAYRSDMIRWGEEKRQADPGFFCRKIVE 97

Bos taurus (taxid: 9913)
EC: 2EC: .EC: 7EC: .EC: 4EC: .EC: 2

>sp|Q29081|PMVK_PIG Phosphomevalonate kinase (Fragment) OS=Sus scrofa GN=PMVK PE=1 SV=3

 Score =  105 bits (263), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 46/90 (51%), Positives = 66/90 (73%)

Query: 4  PKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQNGLEMDKLLGATK 63
          P+L+LLFSGKRK GKDF+T+ L  R+G+  CAI+RLS P+K  +A+++GL+  +LL A+ 
Sbjct: 8  PRLVLLFSGKRKDGKDFVTEALQSRLGADVCAILRLSGPLKEQYAQEHGLDFQRLLDAST 67

Query: 64 YKEKYRAEMITWSEAERRKDNGCFIRSAIE 93
          YKE YR +MI W + +R+ D G F R  +E
Sbjct: 68 YKESYRKDMIRWGQEKRQADPGFFCRKIVE 97

Sus scrofa (taxid: 9823)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 2

>sp|Q9D1G2|PMVK_MOUSE Phosphomevalonate kinase OS=Mus musculus GN=Pmvk PE=2 SV=3

 Score =  105 bits (263), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 47/90 (52%), Positives = 66/90 (73%)

Query: 4  PKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQNGLEMDKLLGATK 63
          P+L+LLFSGKRKSGKDF+T+ L  R+G   CA++RLS P+K  +A+++GL+  +LL A+ 
Sbjct: 8  PRLVLLFSGKRKSGKDFVTERLKSRLGGNICALLRLSGPLKEEYAREHGLDFQRLLDAST 67

Query: 64 YKEKYRAEMITWSEAERRKDNGCFIRSAIE 93
          YKE YR +MI W E +R+ D G F R  +E
Sbjct: 68 YKETYRRDMICWGEQKRQADPGFFCRKIVE 97

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 2

>sp|Q15126|PMVK_HUMAN Phosphomevalonate kinase OS=Homo sapiens GN=PMVK PE=1 SV=3

 Score =  103 bits (258), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 45/90 (50%), Positives = 65/90 (72%)

Query: 4  PKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQNGLEMDKLLGATK 63
          P+L+LLFSGKRKSGKDF+T+ L  R+G+  CA++RLS P+K  +A+++GL   +LL  + 
Sbjct: 8  PRLVLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSGPLKEQYAQEHGLNFQRLLDTST 67

Query: 64 YKEKYRAEMITWSEAERRKDNGCFIRSAIE 93
          YKE +R +MI W E +R+ D G F R  +E
Sbjct: 68 YKEAFRKDMIRWGEEKRQADPGFFCRKIVE 97

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 2

>sp|Q9VIT2|PMVK_DROME Probable phosphomevalonate kinase OS=Drosophila melanogaster GN=CG10268 PE=2 SV=1

 Score = 96.3 bits (238), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 47/94 (50%), Positives = 67/94 (71%), Gaps = 1/94 (1%)

Query: 7   ILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQNGLEMDKLLGATKYKE 66
           I+L SGKRK GKD++++ L  R+GS+ C I+R+S PIKS WA++  L++D LLG   YKE
Sbjct: 4   IVLISGKRKCGKDYISERLQRRLGSRSC-IVRISEPIKSEWARKLQLDLDALLGDGPYKE 62

Query: 67  KYRAEMITWSEAERRKDNGCFIRSAIEMAHAMKK 100
           KYR +MI WS+  R +D G F R A+E A + ++
Sbjct: 63  KYRRDMIVWSDEVRAQDYGYFCRVAMEEALSRQQ 96

Drosophila melanogaster (taxid: 7227)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	103
332029290	205	Phosphomevalonate kinase [Acromyrmex ech	0.951	0.478	0.602	4e-27
307173929	204	Phosphomevalonate kinase [Camponotus flo	0.961	0.485	0.606	1e-26
110758071	202	PREDICTED: phosphomevalonate kinase-like	0.961	0.490	0.565	2e-26
380022912	202	PREDICTED: phosphomevalonate kinase-like	0.961	0.490	0.545	1e-25
322784419	233	hypothetical protein SINV_14785 [Solenop	0.961	0.424	0.585	2e-25
350416381	202	PREDICTED: phosphomevalonate kinase-like	0.951	0.485	0.602	2e-25
383856028	202	PREDICTED: phosphomevalonate kinase-like	0.961	0.490	0.555	4e-25
385258410	202	phosphomevalonate kinase [Bombus terrest	0.951	0.485	0.591	1e-24
348540273	200	PREDICTED: phosphomevalonate kinase-like	0.932	0.48	0.510	2e-24
432962696	197	PREDICTED: phosphomevalonate kinase-like	0.902	0.472	0.537	5e-24

>gi|332029290|gb|EGI69273.1| Phosphomevalonate kinase [Acromyrmex echinatior]

 Score =  125 bits (313), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 59/98 (60%), Positives = 76/98 (77%)

Query: 3   QPKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQNGLEMDKLLGAT 62
           +P+ ILLFSGKRKSGKD++TD L  R+G+Q   IIRLS PIK+HW+K  GL++++LLG  
Sbjct: 21  KPERILLFSGKRKSGKDYITDILYNRLGAQRSTIIRLSGPIKTHWSKSLGLDINQLLGHG 80

Query: 63  KYKEKYRAEMITWSEAERRKDNGCFIRSAIEMAHAMKK 100
           +YKEKYR EM+ WSE  RRKD G F R+AI+M +A  K
Sbjct: 81  EYKEKYRLEMVKWSEDIRRKDYGYFCRAAIDMYNAWDK 118

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307173929|gb|EFN64677.1| Phosphomevalonate kinase [Camponotus floridanus]

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 60/99 (60%), Positives = 74/99 (74%)

Query: 2   TQPKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQNGLEMDKLLGA 61
           T+P+ ILLFSGKRKSGKD++TD L +RIGSQ   IIRLS PIK+HWAK   L++++LL  
Sbjct: 19  TRPERILLFSGKRKSGKDYITDNLHQRIGSQRSIIIRLSGPIKTHWAKSLNLDINQLLAD 78

Query: 62  TKYKEKYRAEMITWSEAERRKDNGCFIRSAIEMAHAMKK 100
            +YKEKYR EM+ W E  RRKD G F R+AI+M  A  K
Sbjct: 79  GEYKEKYRLEMVKWGENMRRKDYGYFCRAAIDMYDAWNK 117

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|110758071|ref|XP_001120920.1| PREDICTED: phosphomevalonate kinase-like [Apis mellifera]

 Score =  122 bits (307), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 56/99 (56%), Positives = 74/99 (74%)

Query: 2   TQPKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQNGLEMDKLLGA 61
           ++PK+ILLFSGKRK GKD++T+ L ERIGS +  II++SAPIKSHWAK +GL +D+L+G 
Sbjct: 18  SKPKIILLFSGKRKCGKDYITNILYERIGSDNSVIIKISAPIKSHWAKSHGLNIDQLMGD 77

Query: 62  TKYKEKYRAEMITWSEAERRKDNGCFIRSAIEMAHAMKK 100
            KYKE YR EM  W E  R  D G F R+A+++ +A  K
Sbjct: 78  GKYKENYRLEMAKWGENIRNTDQGYFCRAALDIYNAYDK 116

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380022912|ref|XP_003695278.1| PREDICTED: phosphomevalonate kinase-like [Apis florea]

 Score =  120 bits (300), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 54/99 (54%), Positives = 73/99 (73%)

Query: 2   TQPKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQNGLEMDKLLGA 61
           ++PK++LLFSGKRK GKD++T+ L ERIGS    II++SAPIKSHWAK + L +D+L+G 
Sbjct: 18  SKPKIVLLFSGKRKCGKDYITNILYERIGSDSSVIIKISAPIKSHWAKSHDLNIDQLMGD 77

Query: 62  TKYKEKYRAEMITWSEAERRKDNGCFIRSAIEMAHAMKK 100
            KYKE YR EM+ W E  R  D G F R+A+++ +A  K
Sbjct: 78  GKYKENYRLEMVKWGENIRNTDPGYFCRAALDIYNAYDK 116

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322784419|gb|EFZ11390.1| hypothetical protein SINV_14785 [Solenopsis invicta]

 Score =  119 bits (299), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 58/99 (58%), Positives = 75/99 (75%)

Query: 2   TQPKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQNGLEMDKLLGA 61
           T+P+ ILLFSGKRKSGKD++T+ L +RIGSQ   IIRLS PIK++WAK  GL++D+LLG 
Sbjct: 48  TKPERILLFSGKRKSGKDYITEILYKRIGSQRGTIIRLSGPIKTYWAKSLGLDIDQLLGH 107

Query: 62  TKYKEKYRAEMITWSEAERRKDNGCFIRSAIEMAHAMKK 100
            +YKEKYR EM  W E  R+KD G F  +AI+M +  +K
Sbjct: 108 GEYKEKYRLEMAKWGEDMRKKDYGYFCHAAIDMYNGWEK 146

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350416381|ref|XP_003490928.1| PREDICTED: phosphomevalonate kinase-like [Bombus impatiens]

 Score =  119 bits (299), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 59/98 (60%), Positives = 71/98 (72%)

Query: 3   QPKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQNGLEMDKLLGAT 62
           +P++ILLFSGKRKSGKD++T+ L ERIG     IIRLS PIK HWAK  GL++D+LLG  
Sbjct: 19  KPQIILLFSGKRKSGKDYITNALHERIGHDKSEIIRLSGPIKFHWAKSLGLDIDQLLGDG 78

Query: 63  KYKEKYRAEMITWSEAERRKDNGCFIRSAIEMAHAMKK 100
           KYKE YR EM  W E  R KD G F R+A+EM +A  K
Sbjct: 79  KYKENYRLEMAKWGENIRNKDYGYFCRAALEMYNAYSK 116

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383856028|ref|XP_003703512.1| PREDICTED: phosphomevalonate kinase-like [Megachile rotundata]

 Score =  118 bits (296), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 55/99 (55%), Positives = 73/99 (73%)

Query: 2   TQPKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQNGLEMDKLLGA 61
           ++P++ILLFSGKRK GKD++T+ L ERIG  +  +I+LS PIKSHWAK  GL++D L+G 
Sbjct: 18  SKPRIILLFSGKRKCGKDYITNALQERIGCDNSGVIKLSGPIKSHWAKSLGLDIDLLMGD 77

Query: 62  TKYKEKYRAEMITWSEAERRKDNGCFIRSAIEMAHAMKK 100
             YKE YR EM  W E+ R+KD+G F R+AI M +A  K
Sbjct: 78  GGYKENYRLEMAKWGESIRKKDHGYFCRAAINMYNARNK 116

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|385258410|gb|AFI55101.1| phosphomevalonate kinase [Bombus terrestris]

 Score =  116 bits (291), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 58/98 (59%), Positives = 70/98 (71%)

Query: 3   QPKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQNGLEMDKLLGAT 62
           +P++ILLFSGKRKSGKD++T+ L ERIG     IIRLS PIK HWAK   L++D+LLG  
Sbjct: 19  KPQIILLFSGKRKSGKDYITNALHERIGRDKSEIIRLSGPIKFHWAKSLDLDIDQLLGDG 78

Query: 63  KYKEKYRAEMITWSEAERRKDNGCFIRSAIEMAHAMKK 100
           KYKE YR EM  W E  R KD G F R+A+EM +A  K
Sbjct: 79  KYKENYRLEMAKWGENIRNKDYGYFCRAALEMYNAYSK 116

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|348540273|ref|XP_003457612.1| PREDICTED: phosphomevalonate kinase-like [Oreochromis niloticus]

 Score =  115 bits (289), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 49/96 (51%), Positives = 74/96 (77%)

Query: 1   MTQPKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQNGLEMDKLLG 60
           +++P L+L+FSGKRKSGKD++T+ + +R+GS  C I+RLS P+K  +A+++GL++D+L+G
Sbjct: 5   VSEPSLVLVFSGKRKSGKDYVTELIQKRLGSDVCCILRLSGPLKEQYAQEHGLDLDQLMG 64

Query: 61  ATKYKEKYRAEMITWSEAERRKDNGCFIRSAIEMAH 96
              YKE+YRA+MI W E+ RR+D G F R A   AH
Sbjct: 65  PGPYKEQYRADMIRWGESRRRQDPGLFCRLASRGAH 100

Source: Oreochromis niloticus

Species: Oreochromis niloticus

Genus: Oreochromis

Family: Cichlidae

Order: Perciformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|432962696|ref|XP_004086743.1| PREDICTED: phosphomevalonate kinase-like [Oryzias latipes]

 Score =  114 bits (286), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 50/93 (53%), Positives = 70/93 (75%)

Query: 4   PKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQNGLEMDKLLGATK 63
           PKL+L+FSGKRKSGKD++TD +L+R+G   C ++RLS P+K  +A+++GL++D+LLG   
Sbjct: 8   PKLVLVFSGKRKSGKDYITDLILDRLGPAVCTVLRLSGPLKQQYAQEHGLDLDQLLGPGP 67

Query: 64  YKEKYRAEMITWSEAERRKDNGCFIRSAIEMAH 96
           YKE+YRA+MI W EA R +D G F R A   A 
Sbjct: 68  YKERYRADMIHWGEARRCQDPGFFCRLATAGAQ 100

Source: Oryzias latipes

Species: Oryzias latipes

Genus: Oryzias

Family: Adrianichthyidae

Order: Beloniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	103
ZFIN|ZDB-GENE-070410-91	209	pmvk "phosphomevalonate kinase	0.912	0.449	0.531	4.2e-24
RGD|1310812	194	Pmvk "phosphomevalonate kinase	0.873	0.463	0.533	3.8e-23
UNIPROTKB|F1RGP9	192	PMVK "Phosphomevalonate kinase	0.873	0.468	0.522	1e-22
MGI|MGI:1915853	192	Pmvk "phosphomevalonate kinase	0.873	0.468	0.522	1e-22
UNIPROTKB|F1MY26	192	PMVK "Phosphomevalonate kinase	0.873	0.468	0.522	1.6e-22
UNIPROTKB|Q2KIU2	192	PMVK "Phosphomevalonate kinase	0.873	0.468	0.522	1.6e-22
UNIPROTKB|Q29081	130	PMVK "Phosphomevalonate kinase	0.873	0.692	0.511	2.6e-22
UNIPROTKB|Q15126	192	PMVK "Phosphomevalonate kinase	0.873	0.468	0.5	9e-22
UNIPROTKB|E2RQI8	192	PMVK "Uncharacterized protein"	0.873	0.468	0.488	2.1e-20
FB|FBgn0032811	189	CG10268 [Drosophila melanogast	0.854	0.465	0.528	4.4e-20

ZFIN|ZDB-GENE-070410-91 pmvk "phosphomevalonate kinase" [Danio rerio (taxid:7955)]

 Score = 276 (102.2 bits), Expect = 4.2e-24, P = 4.2e-24
 Identities = 50/94 (53%), Positives = 74/94 (78%)

Query:     2 TQPKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQNGLEMDKLLGA 61
             TQP +ILLFSGKRKSGKD++TD + +R+ ++ C I+RLSAP+K  +AK + L+ ++L+G+
Sbjct:    14 TQPSIILLFSGKRKSGKDYVTDLIQKRLTAEICCILRLSAPLKEQYAKDHNLDYEELMGS 73

Query:    62 TKYKEKYRAEMITWSEAERRKDNGCFIRSAIEMA 95
              +YKE YRA+MI W E +R++D+G F R AI+ A
Sbjct:    74 GQYKESYRADMIHWGEMKRQEDSGFFCRLAIKHA 107

GO:0006695 "cholesterol biosynthetic process" evidence=IEA

GO:0004631 "phosphomevalonate kinase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

RGD|1310812 Pmvk "phosphomevalonate kinase" [Rattus norvegicus (taxid:10116)]

 Score = 267 (99.0 bits), Expect = 3.8e-23, P = 3.8e-23
 Identities = 48/90 (53%), Positives = 66/90 (73%)

Query:     4 PKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQNGLEMDKLLGATK 63
             P+L+LLFSGKRKSGKDF+T+ L  R+G   CA++RLS P+K  +A+++GL+  KLL A+ 
Sbjct:     8 PRLVLLFSGKRKSGKDFVTERLQSRLGGNICAVLRLSGPLKEQYAREHGLDFQKLLDAST 67

Query:    64 YKEKYRAEMITWSEAERRKDNGCFIRSAIE 93
             YKE YR +MI W E +R+ D G F R  +E
Sbjct:    68 YKETYRRDMICWGEEKRQADPGFFCRKIVE 97

GO:0004631 "phosphomevalonate kinase activity" evidence=ISO;IDA

GO:0005524 "ATP binding" evidence=IEA;ISO

GO:0005777 "peroxisome" evidence=IEA;ISO

GO:0005829 "cytosol" evidence=IEA;ISO

GO:0006695 "cholesterol biosynthetic process" evidence=ISO;NAS

GO:0008299 "isoprenoid biosynthetic process" evidence=IDA

GO:0016126 "sterol biosynthetic process" evidence=ISO

GO:0016310 "phosphorylation" evidence=ISO

GO:0019287 "isopentenyl diphosphate biosynthetic process, mevalonate pathway" evidence=IDA

GO:0070723 "response to cholesterol" evidence=IEA;ISO

UNIPROTKB|F1RGP9 PMVK "Phosphomevalonate kinase" [Sus scrofa (taxid:9823)]

 Score = 263 (97.6 bits), Expect = 1.0e-22, P = 1.0e-22
 Identities = 47/90 (52%), Positives = 67/90 (74%)

Query:     4 PKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQNGLEMDKLLGATK 63
             P+L+LLFSGKRKSGKDF+T+ L  R+G+  CAI+RLS P+K  +A+++GL+  +LL A+ 
Sbjct:     8 PRLVLLFSGKRKSGKDFVTEALQSRLGADVCAILRLSGPLKEQYAQEHGLDFQRLLDAST 67

Query:    64 YKEKYRAEMITWSEAERRKDNGCFIRSAIE 93
             YKE YR +MI W + +R+ D G F R  +E
Sbjct:    68 YKESYRKDMIRWGQEKRQADPGFFCRKIVE 97

GO:0070723 "response to cholesterol" evidence=IEA

GO:0006695 "cholesterol biosynthetic process" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005777 "peroxisome" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0004631 "phosphomevalonate kinase activity" evidence=IEA

MGI|MGI:1915853 Pmvk "phosphomevalonate kinase" [Mus musculus (taxid:10090)]

 Score = 263 (97.6 bits), Expect = 1.0e-22, P = 1.0e-22
 Identities = 47/90 (52%), Positives = 66/90 (73%)

Query:     4 PKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQNGLEMDKLLGATK 63
             P+L+LLFSGKRKSGKDF+T+ L  R+G   CA++RLS P+K  +A+++GL+  +LL A+ 
Sbjct:     8 PRLVLLFSGKRKSGKDFVTERLKSRLGGNICALLRLSGPLKEEYAREHGLDFQRLLDAST 67

Query:    64 YKEKYRAEMITWSEAERRKDNGCFIRSAIE 93
             YKE YR +MI W E +R+ D G F R  +E
Sbjct:    68 YKETYRRDMICWGEQKRQADPGFFCRKIVE 97

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004631 "phosphomevalonate kinase activity" evidence=ISO;IDA

GO:0005524 "ATP binding" evidence=ISO

GO:0005737 "cytoplasm" evidence=IEA

GO:0005777 "peroxisome" evidence=ISO

GO:0005829 "cytosol" evidence=ISO

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0006694 "steroid biosynthetic process" evidence=IEA

GO:0006695 "cholesterol biosynthetic process" evidence=ISO

GO:0008202 "steroid metabolic process" evidence=IEA

GO:0008203 "cholesterol metabolic process" evidence=IEA

GO:0008299 "isoprenoid biosynthetic process" evidence=ISO

GO:0016126 "sterol biosynthetic process" evidence=ISO

GO:0016301 "kinase activity" evidence=IEA

GO:0016310 "phosphorylation" evidence=IDA

GO:0016740 "transferase activity" evidence=IEA

GO:0019287 "isopentenyl diphosphate biosynthetic process, mevalonate pathway" evidence=ISO

UNIPROTKB|F1MY26 PMVK "Phosphomevalonate kinase" [Bos taurus (taxid:9913)]

 Score = 261 (96.9 bits), Expect = 1.6e-22, P = 1.6e-22
 Identities = 47/90 (52%), Positives = 67/90 (74%)

Query:     4 PKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQNGLEMDKLLGATK 63
             P L+LLFSGKRKSGKDF+T+ L  R+G+  CAI+RLS P+K  +A+++GL+  +L+ A+ 
Sbjct:     8 PGLVLLFSGKRKSGKDFVTEALQSRLGADVCAILRLSGPLKEQYAQEHGLDFQRLMDAST 67

Query:    64 YKEKYRAEMITWSEAERRKDNGCFIRSAIE 93
             YKE YR++MI W E +R+ D G F R  +E
Sbjct:    68 YKEAYRSDMICWGEEKRQADPGFFCRKIVE 97

GO:0070723 "response to cholesterol" evidence=IEA

GO:0006695 "cholesterol biosynthetic process" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005777 "peroxisome" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0004631 "phosphomevalonate kinase activity" evidence=IEA

UNIPROTKB|Q2KIU2 PMVK "Phosphomevalonate kinase" [Bos taurus (taxid:9913)]

 Score = 261 (96.9 bits), Expect = 1.6e-22, P = 1.6e-22
 Identities = 47/90 (52%), Positives = 67/90 (74%)

Query:     4 PKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQNGLEMDKLLGATK 63
             P L+LLFSGKRKSGKDF+T+ L  R+G+  CAI+RLS P+K  +A+++GL+  +L+ A+ 
Sbjct:     8 PGLVLLFSGKRKSGKDFVTEALQSRLGADVCAILRLSGPLKEQYAQEHGLDFQRLMDAST 67

Query:    64 YKEKYRAEMITWSEAERRKDNGCFIRSAIE 93
             YKE YR++MI W E +R+ D G F R  +E
Sbjct:    68 YKEAYRSDMIRWGEEKRQADPGFFCRKIVE 97

GO:0019287 "isopentenyl diphosphate biosynthetic process, mevalonate pathway" evidence=IEA

GO:0005777 "peroxisome" evidence=IEA

GO:0004631 "phosphomevalonate kinase activity" evidence=IEA

GO:0006695 "cholesterol biosynthetic process" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|Q29081 PMVK "Phosphomevalonate kinase" [Sus scrofa (taxid:9823)]

 Score = 259 (96.2 bits), Expect = 2.6e-22, P = 2.6e-22
 Identities = 46/90 (51%), Positives = 66/90 (73%)

Query:     4 PKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQNGLEMDKLLGATK 63
             P+L+LLFSGKRK GKDF+T+ L  R+G+  CAI+RLS P+K  +A+++GL+  +LL A+ 
Sbjct:     8 PRLVLLFSGKRKDGKDFVTEALQSRLGADVCAILRLSGPLKEQYAQEHGLDFQRLLDAST 67

Query:    64 YKEKYRAEMITWSEAERRKDNGCFIRSAIE 93
             YKE YR +MI W + +R+ D G F R  +E
Sbjct:    68 YKESYRKDMIRWGQEKRQADPGFFCRKIVE 97

GO:0004631 "phosphomevalonate kinase activity" evidence=ISS

GO:0006695 "cholesterol biosynthetic process" evidence=ISS

GO:0019287 "isopentenyl diphosphate biosynthetic process, mevalonate pathway" evidence=IEA

GO:0005777 "peroxisome" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|Q15126 PMVK "Phosphomevalonate kinase" [Homo sapiens (taxid:9606)]

 Score = 254 (94.5 bits), Expect = 9.0e-22, P = 9.0e-22
 Identities = 45/90 (50%), Positives = 65/90 (72%)

Query:     4 PKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQNGLEMDKLLGATK 63
             P+L+LLFSGKRKSGKDF+T+ L  R+G+  CA++RLS P+K  +A+++GL   +LL  + 
Sbjct:     8 PRLVLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSGPLKEQYAQEHGLNFQRLLDTST 67

Query:    64 YKEKYRAEMITWSEAERRKDNGCFIRSAIE 93
             YKE +R +MI W E +R+ D G F R  +E
Sbjct:    68 YKEAFRKDMIRWGEEKRQADPGFFCRKIVE 97

GO:0019287 "isopentenyl diphosphate biosynthetic process, mevalonate pathway" evidence=IEA

GO:0004631 "phosphomevalonate kinase activity" evidence=IDA

GO:0070723 "response to cholesterol" evidence=IEP

GO:0006695 "cholesterol biosynthetic process" evidence=IDA;TAS

GO:0005777 "peroxisome" evidence=IDA

GO:0005829 "cytosol" evidence=IDA;TAS

GO:0016126 "sterol biosynthetic process" evidence=IDA

GO:0005524 "ATP binding" evidence=IDA

GO:0044281 "small molecule metabolic process" evidence=TAS

UNIPROTKB|E2RQI8 PMVK "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 241 (89.9 bits), Expect = 2.1e-20, P = 2.1e-20
 Identities = 44/90 (48%), Positives = 63/90 (70%)

Query:     4 PKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQNGLEMDKLLGATK 63
             P L+LL SGKRKSGKDF+ + L  R+G+  CA++RLS P+K  +AK++ L+  +LL A+ 
Sbjct:     8 PCLVLLVSGKRKSGKDFVAEALRSRLGADVCAVLRLSGPLKEQYAKEHDLDFQRLLDASA 67

Query:    64 YKEKYRAEMITWSEAERRKDNGCFIRSAIE 93
             YKE +R +MI W E +R+ D G F R  +E
Sbjct:    68 YKEAFRRDMIRWGEEKRQADPGFFCRKVVE 97

GO:0070723 "response to cholesterol" evidence=IEA

GO:0006695 "cholesterol biosynthetic process" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005777 "peroxisome" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0004631 "phosphomevalonate kinase activity" evidence=IEA

FB|FBgn0032811 CG10268 [Drosophila melanogaster (taxid:7227)]

 Score = 238 (88.8 bits), Expect = 4.4e-20, P = 4.4e-20
 Identities = 47/89 (52%), Positives = 64/89 (71%)

Query:     7 ILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQNGLEMDKLLGATKYKE 66
             I+L SGKRK GKD++++ L  R+GS+ C I+R+S PIKS WA++  L++D LLG   YKE
Sbjct:     4 IVLISGKRKCGKDYISERLQRRLGSRSC-IVRISEPIKSEWARKLQLDLDALLGDGPYKE 62

Query:    67 KYRAEMITWSEAERRKDNGCFIRSAIEMA 95
             KYR +MI WS+  R +D G F R A+E A
Sbjct:    63 KYRRDMIVWSDEVRAQDYGYFCRVAMEEA 91

GO:0004631 "phosphomevalonate kinase activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=IEA

GO:0006695 "cholesterol biosynthetic process" evidence=IEA

GO:0008299 "isoprenoid biosynthetic process" evidence=IC

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9D1G2	PMVK_MOUSE	2, ., 7, ., 4, ., 2	0.5222	0.8737	0.4687	yes	N/A
Q2KIU2	PMVK_BOVIN	2, ., 7, ., 4, ., 2	0.5222	0.8737	0.4687	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.7.4	LOW CONFIDENCE prediction!
4th Layer	2.7.4.2	LOW CONFIDENCE prediction!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	103
pfam04275	115	pfam04275, P-mevalo_kinase, Phosphomevalonate kina	4e-41
TIGR01223	182	TIGR01223, Pmev_kin_anim, phosphomevalonate kinase	9e-27

>gnl|CDD|218001 pfam04275, P-mevalo_kinase, Phosphomevalonate kinase

 Score =  130 bits (330), Expect = 4e-41
 Identities = 48/86 (55%), Positives = 67/86 (77%)

Query: 10 FSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQNGLEMDKLLGATKYKEKYR 69
          FSGKRKSGKD++T+ L +R+GS  C+I+R+S PIK  WA+++GL++++LLG   YKEKYR
Sbjct: 1  FSGKRKSGKDYVTERLQQRLGSDRCSILRISEPIKEEWARKHGLDLEELLGDGPYKEKYR 60

Query: 70 AEMITWSEAERRKDNGCFIRSAIEMA 95
           +MI W E +R+KD G F R+A E A
Sbjct: 61 KDMIKWGEEKRQKDPGFFCRAACEEA 86

Phosphomevalonate kinase (EC:2.7.4.2) catalyzes the phosphorylation of 5-phosphomevalonate into 5-diphosphomevalonate, an essential step in isoprenoid biosynthesis via the mevalonate pathway. This family represents the animal type of the enzyme. The other is the ERG8 type, found in plants and fungi, and some bacteria (see pfam00288). Length = 115

>gnl|CDD|130290 TIGR01223, Pmev_kin_anim, phosphomevalonate kinase, animal type

 Score = 96.7 bits (240), Expect = 9e-27
 Identities = 43/87 (49%), Positives = 62/87 (71%)

Query: 7  ILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQNGLEMDKLLGATKYKE 66
          +LLFSGKRKSGKDF+T+ L  R+G+  CA++RLS P+K  +A+++GL   +LL  + YKE
Sbjct: 1  VLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSGPLKEQYAQEHGLNFQRLLDTSTYKE 60

Query: 67 KYRAEMITWSEAERRKDNGCFIRSAIE 93
           +R +MI W E +R+ D G F R  +E
Sbjct: 61 AFRKDMIRWGEEKRQADPGFFCRKIVE 87

This enzyme is part of the mevalonate pathway, one of two alternative pathways for the biosynthesis of IPP. In an example of nonorthologous gene displacement, two different types of phosphomevalonate kinase are found. One is this type, found in animals. The other is the ERG8 type, found in plants and fungi (TIGR01219) and in Gram-positive bacteria (TIGR01220) [Central intermediary metabolism, Other]. Length = 182

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	103
PF04275	116	P-mevalo_kinase: Phosphomevalonate kinase ; InterP	100.0
TIGR01223	182	Pmev_kin_anim phosphomevalonate kinase, animal typ	100.0
PHA02575	227	1 deoxynucleoside monophosphate kinase; Provisiona	98.49
PRK08356	195	hypothetical protein; Provisional	97.68
PRK05480	209	uridine/cytidine kinase; Provisional	97.27
PRK00131	175	aroK shikimate kinase; Reviewed	97.11
PRK06696	223	uridine kinase; Validated	96.95
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	96.94
TIGR02173	171	cyt_kin_arch cytidylate kinase, putative. Proteins	96.89
COG1102	179	Cmk Cytidylate kinase [Nucleotide transport and me	96.75
PRK01184	184	hypothetical protein; Provisional	96.57
TIGR01359	183	UMP_CMP_kin_fam UMP-CMP kinase family. This subfam	96.53
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	96.5
cd01124	187	KaiC KaiC is a circadian clock protein primarily f	96.45
PRK15453	290	phosphoribulokinase; Provisional	96.43
PRK12338	319	hypothetical protein; Provisional	96.41
PRK04040	188	adenylate kinase; Provisional	96.4
cd01428	194	ADK Adenylate kinase (ADK) catalyzes the reversibl	96.29
PRK14731	208	coaE dephospho-CoA kinase; Provisional	96.18
PTZ00301	210	uridine kinase; Provisional	96.14
PRK00300	205	gmk guanylate kinase; Provisional	96.12
PLN02200	234	adenylate kinase family protein	96.03
PRK00081	194	coaE dephospho-CoA kinase; Reviewed	95.98
PRK07667	193	uridine kinase; Provisional	95.84
TIGR03880	224	KaiC_arch_3 KaiC domain protein, AF_0351 family. T	95.84
PRK04328	249	hypothetical protein; Provisional	95.82
PRK04182	180	cytidylate kinase; Provisional	95.77
PRK06762	166	hypothetical protein; Provisional	95.72
PRK08233	182	hypothetical protein; Provisional	95.7
PF03976	228	PPK2: Polyphosphate kinase 2 (PPK2); InterPro: IPR	95.69
PF00004	132	AAA: ATPase family associated with various cellula	95.69
PF07724	171	AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR	95.65
cd02028	179	UMPK_like Uridine monophosphate kinase_like (UMPK_	95.5
PF14532	138	Sigma54_activ_2: Sigma-54 interaction domain; PDB:	95.49
PRK14730	195	coaE dephospho-CoA kinase; Provisional	95.45
COG0237	201	CoaE Dephospho-CoA kinase [Coenzyme metabolism]	95.39
TIGR00455	184	apsK adenylylsulfate kinase (apsK). Important resi	95.38
PRK14527	191	adenylate kinase; Provisional	95.37
TIGR03707	230	PPK2_P_aer polyphosphate kinase 2, PA0141 family.	95.34
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	95.32
COG0572	218	Udk Uridine kinase [Nucleotide transport and metab	95.31
PF06745	226	KaiC: KaiC; InterPro: IPR014774 This entry represe	95.29
PF00158	168	Sigma54_activat: Sigma-54 interaction domain; Inte	95.26
cd02027	149	APSK Adenosine 5'-phosphosulfate kinase (APSK) cat	95.23
TIGR03420	226	DnaA_homol_Hda DnaA regulatory inactivator Hda. Me	95.2
TIGR01351	210	adk adenylate kinases. Adenylate kinase (EC 2.7.4.	95.17
PRK12339	197	2-phosphoglycerate kinase; Provisional	95.16
PF00625	183	Guanylate_kin: Guanylate kinase; InterPro: IPR0081	95.14
TIGR03574	249	selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Mem	95.13
PRK07429	327	phosphoribulokinase; Provisional	95.09
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	95.06
PF13401	131	AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S	95.04
PRK14530	215	adenylate kinase; Provisional	95.04
PRK06067	234	flagellar accessory protein FlaH; Validated	95.04
) proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor" target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF06309">PF06309	127	Torsin: Torsin; InterPro: IPR010448 This family co	95.03
cd00464	154	SK Shikimate kinase (SK) is the fifth enzyme in th	95.01
PRK03846	198	adenylylsulfate kinase; Provisional	95.0
cd02020	147	CMPK Cytidine monophosphate kinase (CMPK) catalyze	94.98
PRK14531	183	adenylate kinase; Provisional	94.93
PF07728	139	AAA_5: AAA domain (dynein-related subfamily); Inte	94.86
cd02022	179	DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.2	94.84
TIGR00235	207	udk uridine kinase. Model contains a number of lon	94.84
PF00485	194	PRK: Phosphoribulokinase / Uridine kinase family;	94.77
PRK05541	176	adenylylsulfate kinase; Provisional	94.74
cd02021	150	GntK Gluconate kinase (GntK) catalyzes the phospho	94.73
PRK08154	309	anaerobic benzoate catabolism transcriptional regu	94.7
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	94.67
PRK03731	171	aroL shikimate kinase II; Reviewed	94.66
TIGR03709	264	PPK2_rel_1 polyphosphate:nucleotide phosphotransfe	94.6
smart00072	184	GuKc Guanylate kinase homologues. Active enzymes c	94.45
TIGR03881	229	KaiC_arch_4 KaiC domain protein, PAE1156 family. M	94.43
PRK06547	172	hypothetical protein; Provisional	94.33
PRK09270	229	nucleoside triphosphate hydrolase domain-containin	94.32
PRK13947	171	shikimate kinase; Provisional	94.31
PF13191	185	AAA_16: AAA ATPase domain; PDB: 2V1U_A.	94.22
PF13173	128	AAA_14: AAA domain	94.21
PF01583	156	APS_kinase: Adenylylsulphate kinase; InterPro: IPR	94.15
PRK04220	301	2-phosphoglycerate kinase; Provisional	93.95
cd02024	187	NRK1 Nicotinamide riboside kinase (NRK) is an enzy	93.86
smart00382	148	AAA ATPases associated with a variety of cellular	93.85
PRK00279	215	adk adenylate kinase; Reviewed	93.82
cd02025	220	PanK Pantothenate kinase (PanK) catalyzes the phos	93.81
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	93.66
PRK14528	186	adenylate kinase; Provisional	93.62
PLN00020	413	ribulose bisphosphate carboxylase/oxygenase activa	93.57
PLN02459	261	probable adenylate kinase	93.55
COG0194	191	Gmk Guanylate kinase [Nucleotide transport and met	93.54
PRK08903	227	DnaA regulatory inactivator Hda; Validated	93.51
TIGR02012	321	tigrfam_recA protein RecA. This model describes or	93.47
PRK09354	349	recA recombinase A; Provisional	93.45
PTZ00088	229	adenylate kinase 1; Provisional	93.44
PRK14532	188	adenylate kinase; Provisional	93.41
PRK05439	311	pantothenate kinase; Provisional	93.39
PLN02348	395	phosphoribulokinase	93.36
PRK02496	184	adk adenylate kinase; Provisional	93.33
PLN02422	232	dephospho-CoA kinase	93.28
cd00983	325	recA RecA is a bacterial enzyme which has roles in	93.12
PRK00023	225	cmk cytidylate kinase; Provisional	93.03
PRK11608	326	pspF phage shock protein operon transcriptional ac	93.03
PRK14737	186	gmk guanylate kinase; Provisional	92.99
PF01121	180	CoaE: Dephospho-CoA kinase; InterPro: IPR001977 Th	92.76
TIGR00152	188	dephospho-CoA kinase. This model produces scores i	92.61
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	92.59
PLN02674	244	adenylate kinase	92.53
PRK09302	509	circadian clock protein KaiC; Reviewed	92.51
COG2804	500	PulE Type II secretory pathway, ATPase PulE/Tfp pi	92.51
PRK08116	268	hypothetical protein; Validated	92.5
cd01672	200	TMPK Thymidine monophosphate kinase (TMPK), also k	92.43
cd00071	137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	92.41
cd01120	165	RecA-like_NTPases RecA-like NTPases. This family i	92.39
PRK12377	248	putative replication protein; Provisional	92.39
COG0467	260	RAD55 RecA-superfamily ATPases implicated in signa	92.32
TIGR03877	237	thermo_KaiC_1 KaiC domain protein, Ph0284 family.	92.32
TIGR02974	329	phageshock_pspF psp operon transcriptional activat	92.3
PTZ00451	244	dephospho-CoA kinase; Provisional	92.28
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	92.27
PRK14738	206	gmk guanylate kinase; Provisional	92.19
PF00406	151	ADK: Adenylate kinase; InterPro: IPR000850 Adenyla	92.19
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	92.18
cd02029	277	PRK_like Phosphoribulokinase-like (PRK-like) is a	92.01
cd01983	99	Fer4_NifH The Fer4_NifH superfamily contains a var	92.0
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	91.96
TIGR03708	493	poly_P_AMP_trns polyphosphate:AMP phosphotransfera	91.9
PRK14733	204	coaE dephospho-CoA kinase; Provisional	91.86
PRK08533	230	flagellar accessory protein FlaH; Reviewed	91.85
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	91.78
TIGR01817	534	nifA Nif-specific regulatory protein. This model r	91.57
TIGR03878	259	thermo_KaiC_2 KaiC domain protein, AF_0795 family.	91.48
PRK05022	509	anaerobic nitric oxide reductase transcription reg	91.42
PRK03839	180	putative kinase; Provisional	91.37
TIGR03345	852	VI_ClpV1 type VI secretion ATPase, ClpV1 family. M	91.35
PRK13808	333	adenylate kinase; Provisional	91.16
PRK14732	196	coaE dephospho-CoA kinase; Provisional	91.12
PF07693	325	KAP_NTPase: KAP family P-loop domain; InterPro: IP	91.12
TIGR01313	163	therm_gnt_kin carbohydrate kinase, thermoresistant	91.11
PRK14526	211	adenylate kinase; Provisional	91.01
PLN02796	347	D-glycerate 3-kinase	91.0
COG3267	269	ExeA Type II secretory pathway, component ExeA (pr	90.91
PRK00698	205	tmk thymidylate kinase; Validated	90.9
PRK05800	170	cobU adenosylcobinamide kinase/adenosylcobinamide-	90.67
PRK09302	509	circadian clock protein KaiC; Reviewed	90.66
PHA02530	300	pseT polynucleotide kinase; Provisional	90.5
TIGR00554	290	panK_bact pantothenate kinase, bacterial type. Sho	90.44
PRK11034	758	clpA ATP-dependent Clp protease ATP-binding subuni	90.38
PRK09519	790	recA DNA recombination protein RecA; Reviewed	90.34
PRK10820	520	DNA-binding transcriptional regulator TyrR; Provis	90.33
PRK08939	306	primosomal protein DnaI; Reviewed	90.32
smart00763	361	AAA_PrkA PrkA AAA domain. This is a family of PrkA	90.23
PRK13946	184	shikimate kinase; Provisional	90.14
COG3709	192	Uncharacterized component of phosphonate metabolis	90.12
COG2805	353	PilT Tfp pilus assembly protein, pilus retraction	90.04
cd02034	116	CooC The accessory protein CooC, which contains a	89.97
COG0529	197	CysC Adenylylsulfate kinase and related kinases [I	89.96
PF08433	270	KTI12: Chromatin associated protein KTI12 ; InterP	89.84
PRK06761	282	hypothetical protein; Provisional	89.81
PF13189	179	Cytidylate_kin2: Cytidylate kinase-like family; PD	89.77
cd02026	273	PRK Phosphoribulokinase (PRK) is an enzyme involve	89.67
PF06414	199	Zeta_toxin: Zeta toxin; InterPro: IPR010488 This e	89.65
cd00227	175	CPT Chloramphenicol (Cm) phosphotransferase (CPT).	89.63
PRK00440	319	rfc replication factor C small subunit; Reviewed	89.4
TIGR03015	269	pepcterm_ATPase putative secretion ATPase, PEP-CTE	89.39
TIGR01420	343	pilT_fam pilus retraction protein PilT. This model	89.35
PF13604	196	AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL	89.31
PLN03046	460	D-glycerate 3-kinase; Provisional	89.19
TIGR02880	284	cbbX_cfxQ probable Rubsico expression protein CbbX	89.17
PRK12337	475	2-phosphoglycerate kinase; Provisional	89.05
PRK10923	469	glnG nitrogen regulation protein NR(I); Provisiona	89.03
PRK00091	307	miaA tRNA delta(2)-isopentenylpyrophosphate transf	89.02
PHA00729	226	NTP-binding motif containing protein	88.95
COG3596	296	Predicted GTPase [General function prediction only	88.95
PRK00625	173	shikimate kinase; Provisional	88.88
PF01695	178	IstB_IS21: IstB-like ATP binding protein; InterPro	88.84
PRK15424	538	propionate catabolism operon regulatory protein Pr	88.73
TIGR02329	526	propionate_PrpR propionate catabolism operon regul	88.54
TIGR00041	195	DTMP_kinase thymidylate kinase. Function: phosphor	88.54
CHL00181	287	cbbX CbbX; Provisional	88.48
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	88.33
PRK08181	269	transposase; Validated	88.24
PRK03333	395	coaE dephospho-CoA kinase/protein folding accessor	88.12
PRK06217	183	hypothetical protein; Validated	88.12
KOG2170|consensus	344		88.1
PRK15429	686	formate hydrogenlyase transcriptional activator Fh	88.07
PHA02544	316	44 clamp loader, small subunit; Provisional	88.03
PF12846	304	AAA_10: AAA-like domain	87.93
cd00984	242	DnaB_C DnaB helicase C terminal domain. The hexame	87.89
cd01129	264	PulE-GspE PulE/GspE The type II secretory pathway	87.79
COG0464	494	SpoVK ATPases of the AAA+ class [Posttranslational	87.76
PRK10865	857	protein disaggregation chaperone; Provisional	87.45
TIGR02655	484	circ_KaiC circadian clock protein KaiC. Members of	87.44
PRK00889	175	adenylylsulfate kinase; Provisional	87.4
TIGR00150	133	HI0065_YjeE ATPase, YjeE family. Members of this f	87.39
TIGR03499	282	FlhF flagellar biosynthetic protein FlhF.	87.38
TIGR00017	217	cmk cytidylate kinase. This family consists of cyt	87.35
TIGR02639	731	ClpA ATP-dependent Clp protease ATP-binding subuni	87.35
PF00154	322	RecA: recA bacterial DNA recombination protein; In	87.31
PRK07952	244	DNA replication protein DnaC; Validated	87.3
PRK14734	200	coaE dephospho-CoA kinase; Provisional	87.24
TIGR02538	564	type_IV_pilB type IV-A pilus assembly ATPase PilB.	87.24
TIGR03346	852	chaperone_ClpB ATP-dependent chaperone ClpB. Membe	87.19
PF05707	193	Zot: Zonular occludens toxin (Zot); InterPro: IPR0	87.11
KOG3347|consensus	176		87.11
cd00544	169	CobU Adenosylcobinamide kinase / adenosylcobinamid	87.09
PRK05057	172	aroK shikimate kinase I; Reviewed	87.05
PRK14729	300	miaA tRNA delta(2)-isopentenylpyrophosphate transf	87.02
COG2204	464	AtoC Response regulator containing CheY-like recei	86.91
TIGR01007	204	eps_fam capsular exopolysaccharide family. This mo	86.88
CHL00081	350	chlI Mg-protoporyphyrin IX chelatase	86.87
PRK05642	234	DNA replication initiation factor; Validated	86.85
PF09848	352	DUF2075: Uncharacterized conserved protein (DUF207	86.55
TIGR00176	155	mobB molybdopterin-guanine dinucleotide biosynthes	86.49
PRK11388	638	DNA-binding transcriptional regulator DhaR; Provis	86.45
COG1484	254	DnaC DNA replication protein [DNA replication, rec	86.43
PF13521	163	AAA_28: AAA domain; PDB: 1LW7_A.	86.42
TIGR03708	493	poly_P_AMP_trns polyphosphate:AMP phosphotransfera	86.31
PRK13948	182	shikimate kinase; Provisional	86.09
PF00063	689	Myosin_head: Myosin head (motor domain); InterPro:	86.02
PF00910	107	RNA_helicase: RNA helicase; InterPro: IPR000605 He	85.95
PRK10436	462	hypothetical protein; Provisional	85.94
PRK03992	389	proteasome-activating nucleotidase; Provisional	85.88
TIGR00362	405	DnaA chromosomal replication initiator protein Dna	85.77
PRK06921	266	hypothetical protein; Provisional	85.76
cd03115	173	SRP The signal recognition particle (SRP) mediates	85.54
cd00550	254	ArsA_ATPase Oxyanion-translocating ATPase (ArsA).	85.41
PRK07261	171	topology modulation protein; Provisional	85.4
PRK08084	235	DNA replication initiation factor; Provisional	85.29
cd01394	218	radB RadB. The archaeal protein radB shares simila	84.98
PF13555	62	AAA_29: P-loop containing region of AAA domain	84.87
CHL00095	821	clpC Clp protease ATP binding subunit	84.84
PRK10751	173	molybdopterin-guanine dinucleotide biosynthesis pr	84.78
PF04851	184	ResIII: Type III restriction enzyme, res subunit;	84.75
PF01935	229	DUF87: Domain of unknown function DUF87; InterPro:	84.57
PRK04195	482	replication factor C large subunit; Provisional	84.31
PRK08118	167	topology modulation protein; Reviewed	84.26
PF00437	270	T2SE: Type II/IV secretion system protein; InterPr	84.22
PRK08727	233	hypothetical protein; Validated	84.22
TIGR01526	325	nadR_NMN_Atrans nicotinamide-nucleotide adenylyltr	84.19
TIGR00678	188	holB DNA polymerase III, delta' subunit. At positi	84.12
cd02033	329	BchX Chlorophyllide reductase converts chlorophyll	84.06
TIGR02533	486	type_II_gspE general secretory pathway protein E.	84.0
PRK00149	450	dnaA chromosomal replication initiation protein; R	83.85
PRK05342	412	clpX ATP-dependent protease ATP-binding subunit Cl	83.81
PF07931	174	CPT: Chloramphenicol phosphotransferase-like prote	83.63
KOG0635|consensus	207		83.51
PF05729	166	NACHT: NACHT domain	83.45
PF03266	168	NTPase_1: NTPase; InterPro: IPR004948 This entry r	83.36
PLN02772	398	guanylate kinase	83.03
PRK09183	259	transposase/IS protein; Provisional	83.02
TIGR02640	262	gas_vesic_GvpN gas vesicle protein GvpN. Members o	82.96
cd02035	217	ArsA ArsA ATPase functionas as an efflux pump loca	82.94
PRK12724	432	flagellar biosynthesis regulator FlhF; Provisional	82.78
TIGR02655	484	circ_KaiC circadian clock protein KaiC. Members of	82.72
COG2326	270	Uncharacterized conserved protein [Function unknow	82.63
PRK06526	254	transposase; Provisional	82.57
TIGR02639	731	ClpA ATP-dependent Clp protease ATP-binding subuni	82.47
PF03205	140	MobB: Molybdopterin guanine dinucleotide synthesis	82.47
PF10236	309	DAP3: Mitochondrial ribosomal death-associated pro	82.46
cd03116	159	MobB Molybdenum is an essential trace element in t	82.26
PRK09825	176	idnK D-gluconate kinase; Provisional	82.2
CHL00095	821	clpC Clp protease ATP binding subunit	82.14
PTZ00454	398	26S protease regulatory subunit 6B-like protein; P	82.03
PRK14490	369	putative bifunctional molybdopterin-guanine dinucl	82.0
PRK00080	328	ruvB Holliday junction DNA helicase RuvB; Reviewed	82.0
PRK12402	337	replication factor C small subunit 2; Reviewed	81.95
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	81.83
COG4088	261	Predicted nucleotide kinase [Nucleotide transport	81.73
PRK13886	241	conjugal transfer protein TraL; Provisional	81.72
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	81.72
TIGR00635	305	ruvB Holliday junction DNA helicase, RuvB subunit.	81.69
TIGR01968	261	minD_bact septum site-determining protein MinD. Th	81.69
cd01918	149	HprK_C HprK/P, the bifunctional histidine-containi	81.5
cd00046	144	DEXDc DEAD-like helicases superfamily. A diverse f	81.49
PRK09361	225	radB DNA repair and recombination protein RadB; Pr	81.45
PRK06835	329	DNA replication protein DnaC; Validated	81.38
PRK13477	512	bifunctional pantoate ligase/cytidylate kinase; Pr	81.33
PRK06893	229	DNA replication initiation factor; Validated	81.33
TIGR02236	310	recomb_radA DNA repair and recombination protein R	81.25
PRK13695	174	putative NTPase; Provisional	81.2
TIGR01613	304	primase_Cterm phage/plasmid primase, P4 family, C-	81.18
TIGR02902	531	spore_lonB ATP-dependent protease LonB. Members of	81.15
PRK14529	223	adenylate kinase; Provisional	81.13
TIGR02881	261	spore_V_K stage V sporulation protein K. Members o	81.03
PRK05973	237	replicative DNA helicase; Provisional	81.0
PRK05537	568	bifunctional sulfate adenylyltransferase subunit 1	80.99
PRK14489	366	putative bifunctional molybdopterin-guanine dinucl	80.96
PRK14953	486	DNA polymerase III subunits gamma and tau; Provisi	80.9
PF01591	222	6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR0130	80.62
CHL00175	281	minD septum-site determining protein; Validated	80.5
PF13476	202	AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V	80.42
COG1221	403	PspF Transcriptional regulators containing an AAA-	80.4
TIGR01818	463	ntrC nitrogen regulation protein NR(I). This model	80.19
PF13177	162	DNA_pol3_delta2: DNA polymerase III, delta subunit	80.11
cd01123	235	Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of r	80.04
TIGR01241	495	FtsH_fam ATP-dependent metalloprotease FtsH. HflB(	80.02

>PF04275 P-mevalo_kinase: Phosphomevalonate kinase ; InterPro: IPR005919 Phosphomevalonate kinase (2

Probab=100.00  E-value=1.2e-50  Score=290.70  Aligned_cols=86  Identities=50%  Similarity=0.953  Sum_probs=67.1

Q ss_pred             EecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHHHcCccHHHhcCCCCcHHHhHHHHHHHHHHHhccChhhhHH
Q psy4713          10 FSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQNGLEMDKLLGATKYKEKYRAEMITWSEAERRKDNGCFIR   89 (103)
Q Consensus        10 ~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~~~glDl~~LL~d~~YKE~~R~~mi~wge~~R~~D~g~Fcr   89 (103)
                      |||||||||||||++|+++|++..+.|||||+|||++||++|||||++||+|++|||+||++||+|||++|++|||||||
T Consensus         1 ~sGkrksGKDy~a~~l~~~l~~~~~~iv~iS~p~K~~yA~~~glDl~~LL~d~~YKE~~R~~mi~w~e~~r~~dp~~Fcr   80 (116)
T PF04275_consen    1 FSGKRKSGKDYCADILASRLGEDNCRIVSISDPIKREYAEAHGLDLDRLLSDRAYKEQYRPDMIAWGEEQRNQDPGFFCR   80 (116)
T ss_dssp             EEE-TTSSHHHHHHHHHHHH-TTTEEEE-THHHHHHHHHHTTT-------------SSHHHHHHHHHHHHHHH-TTTTHH
T ss_pred             CCCCcCCCchHHHHHHHHHHhhccCcEEEechHHHHHHHHHhCcCHHHHhcCcchHHHHHHHHHHHHHHHHhhCcchHHH
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHH
Q psy4713          90 SAIEMA   95 (103)
Q Consensus        90 ~~~~~~   95 (103)
                      ++++++
T Consensus        81 ~a~~~~   86 (116)
T PF04275_consen   81 AAVEEA   86 (116)
T ss_dssp             HHSBT-
T ss_pred             HHHHhh
Confidence            999887

7.4.2 from EC) catalyzes the phosphorylation of 5-phosphomevalonate into 5-diphosphomevalonate, an essential step in isoprenoid biosynthesis via the mevalonate pathway. In an example of nonorthologous gene displacement, two different types of phosphomevalonate kinase are found - the higher eukaryotic form and the ERG8 type. This model represents the form of the enzyme found in animals. ; GO: 0004631 phosphomevalonate kinase activity, 0006695 cholesterol biosynthetic process, 0005737 cytoplasm; PDB: 3CH4_B.

>TIGR01223 Pmev_kin_anim phosphomevalonate kinase, animal type

Probab=100.00  E-value=1.5e-43  Score=269.61  Aligned_cols=89  Identities=48%  Similarity=0.931  Sum_probs=86.0

Q ss_pred             EEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHHHcCccHHHhcCCCCcHHHhHHHHHHHHHHHhccChhh
Q psy4713           7 ILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQNGLEMDKLLGATKYKEKYRAEMITWSEAERRKDNGC   86 (103)
Q Consensus         7 IiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~~~glDl~~LL~d~~YKE~~R~~mi~wge~~R~~D~g~   86 (103)
                      ||||||||||||||||+.|.++|+..+|.++|||+|||++||.+||||+++||+|++|||+||++||.|||++|++||||
T Consensus         1 iilisGKrksGKD~~a~~l~~~l~~~~~~~vriS~piK~~~A~~~gld~~~Ll~d~~YKE~~R~~mi~w~e~~r~~dp~~   80 (182)
T TIGR01223         1 VLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSGPLKEQYAQEHGLNFQRLLDTSTYKEAFRKDMIRWGEEKRQADPGF   80 (182)
T ss_pred             CEEEecCCCCChHHHHHHHHHhhccccceEEEecHHHHHHHHHHhChhHHHhcCCcccchhhhHHHHHHHHHHHhhCccH
Confidence            79999999999999999999999988899999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHH
Q psy4713          87 FIRSAIEMA   95 (103)
Q Consensus        87 Fcr~~~~~~   95 (103)
                      |||.+++.+
T Consensus        81 F~r~~~~~~   89 (182)
T TIGR01223        81 FCRKIVEGI   89 (182)
T ss_pred             HHHHHHhcc
Confidence            999998654

This enzyme is part of the mevalonate pathway, one of two alternative pathways for the biosynthesis of IPP. In an example of nonorthologous gene displacement, two different types of phosphomevalonate kinase are found. One is this type, found in animals. The other is the ERG8 type, found in plants and fungi (TIGR01219) and in Gram-positive bacteria (TIGR01220).

>PHA02575 1 deoxynucleoside monophosphate kinase; Provisional

Probab=98.49  E-value=5.9e-07  Score=70.83  Aligned_cols=86  Identities=28%  Similarity=0.429  Sum_probs=63.1

Q ss_pred             EEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHHHc------------Ccc--------HH---------
Q psy4713           6 LILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQN------------GLE--------MD---------   56 (103)
Q Consensus         6 lIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~~~------------glD--------l~---------   56 (103)
                      .||.+||+.|||||=++..+.+.-   .+..+++++|+|+.-+...            |+.        ++         
T Consensus         1 miI~i~G~~gsGKstva~~~~~~g---~~~~~~~~d~ik~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~dre~~l~~~~   77 (227)
T PHA02575          1 MLIAISGKKRSGKDTVADFIIENY---NAVKYQLADPIKEILAIAMGRYGADDLMFVPGLTYDDFDGIGYDREAPLPLSN   77 (227)
T ss_pred             CEEEEeCCCCCCHHHHHHHHHhcC---CcEEEehhHHHHHHHHHHHHHhcccCccccCCcccccccCcCccccCCCcCCH
Confidence            389999999999999999998773   2333999999999876652            222        11         


Q ss_pred             -----------HhcCCCC--------cHHHh------------HHHHHHHHHH-HhccChhhhHHHHHHH
Q psy4713          57 -----------KLLGATK--------YKEKY------------RAEMITWSEA-ERRKDNGCFIRSAIEM   94 (103)
Q Consensus        57 -----------~LL~d~~--------YKE~~------------R~~mi~wge~-~R~~D~g~Fcr~~~~~   94 (103)
                                 .+|.+..        |.+.|            |.-|-.||.+ .|+.||+|||+.+++.
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SiR~llQ~~GTd~~R~~d~~~Wvr~a~~~  147 (227)
T PHA02575         78 EDVIRIFEQALMLLNDKGTCYLLYAHYDKVYEIILNNNNPWSIRRLMQTLGTDIVVNFNKMYWVKLFALK  147 (227)
T ss_pred             HHHHHHHHHHHHHHhccccceeeecchHHHHHHHcCCCCCCCHHHHHHHhcCceeeecCcCHhHHHHHHH
Confidence                       1232322        44443            7889999966 5999999999998865

>PRK08356 hypothetical protein; Provisional

Probab=97.68  E-value=3.5e-05  Score=56.45  Aligned_cols=76  Identities=18%  Similarity=0.180  Sum_probs=49.0

Q ss_pred             CCCCeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHHHcCccHHHhcCCCCcHHHhHHHHHHHHHHHh
Q psy4713           1 MTQPKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQNGLEMDKLLGATKYKEKYRAEMITWSEAER   80 (103)
Q Consensus         1 ~~~pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~~~glDl~~LL~d~~YKE~~R~~mi~wge~~R   80 (103)
                      |..+..+|+|+|..||||+-+++.|.+ +   .+.+++..+++++.... +|.|+.=+-....-...-+.+++.||+..+
T Consensus         1 ~~~~~~~i~~~G~~gsGK~t~a~~l~~-~---g~~~is~~~~~~~~~~~-~~~~~~f~~~~~~~~~~~~~~~~e~g~~~~   75 (195)
T PRK08356          1 MGVEKMIVGVVGKIAAGKTTVAKFFEE-K---GFCRVSCSDPLIDLLTH-NVSDYSWVPEVPFKGEPTRENLIELGRYLK   75 (195)
T ss_pred             CCCCcEEEEEECCCCCCHHHHHHHHHH-C---CCcEEeCCCcccccccc-cccccccccHHHHhhccccccHHHHHHHHH
Confidence            677888999999999999999999953 4   45689999988874433 333321000000001113457788887776


Q ss_pred             c
Q psy4713          81 R   81 (103)
Q Consensus        81 ~   81 (103)
                      +
T Consensus        76 ~   76 (195)
T PRK08356         76 E   76 (195)
T ss_pred             H
Confidence            5

>PRK05480 uridine/cytidine kinase; Provisional

Probab=97.27  E-value=0.00061  Score=49.90  Aligned_cols=40  Identities=25%  Similarity=0.425  Sum_probs=34.6

Q ss_pred             CCCCeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecc
Q psy4713           1 MTQPKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLS   40 (103)
Q Consensus         1 ~~~pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS   40 (103)
                      |+++..||.|+|.+||||-.+++.|...++...+.+++.-
T Consensus         2 ~~~~~~iI~I~G~sGsGKTTl~~~l~~~l~~~~~~~i~~D   41 (209)
T PRK05480          2 MMKKPIIIGIAGGSGSGKTTVASTIYEELGDESIAVIPQD   41 (209)
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHHhCCCceEEEeCC
Confidence            7788999999999999999999999999965566666663

>PRK00131 aroK shikimate kinase; Reviewed

Probab=97.11  E-value=0.0024  Score=44.09  Aligned_cols=49  Identities=18%  Similarity=0.288  Sum_probs=36.0

Q ss_pred             CCeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHHHcCccHHHh
Q psy4713           3 QPKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQNGLEMDKL   58 (103)
Q Consensus         3 ~pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~~~glDl~~L   58 (103)
                      +|..+|+|+|.+||||-.++..|++.++   ...+.....++    +..|.++.++
T Consensus         2 ~~~~~i~l~G~~GsGKstla~~La~~l~---~~~~d~d~~~~----~~~g~~~~~~   50 (175)
T PRK00131          2 LKGPNIVLIGFMGAGKSTIGRLLAKRLG---YDFIDTDHLIE----ARAGKSIPEI   50 (175)
T ss_pred             CCCCeEEEEcCCCCCHHHHHHHHHHHhC---CCEEEChHHHH----HHcCCCHHHH
Confidence            4455888999999999999999999986   45556555543    3446666554

>PRK06696 uridine kinase; Validated

Probab=96.95  E-value=0.0014  Score=49.11  Aligned_cols=38  Identities=32%  Similarity=0.364  Sum_probs=32.0

Q ss_pred             CCeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecc
Q psy4713           3 QPKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLS   40 (103)
Q Consensus         3 ~pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS   40 (103)
                      ..++||.|+|-+||||-.+|+.|++.|+...+.++.||
T Consensus        20 ~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~   57 (223)
T PRK06696         20 TRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRAS   57 (223)
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEec
Confidence            45789999999999999999999999976445666655

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=96.94  E-value=0.0016  Score=43.09  Aligned_cols=32  Identities=34%  Similarity=0.610  Sum_probs=29.3

Q ss_pred             EEEEecCcCCchhHHHHHHHHHhcccceEEEecch
Q psy4713           7 ILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSA   41 (103)
Q Consensus         7 IiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~   41 (103)
                      ||+|+|.+||||-.++..|++.++   +.++++++
T Consensus         1 vI~I~G~~gsGKST~a~~La~~~~---~~~i~~d~   32 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAERLG---FPVISMDD   32 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHT---CEEEEEHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHC---CeEEEecc
Confidence            789999999999999999999984   77888888

...

>TIGR02173 cyt_kin_arch cytidylate kinase, putative

Probab=96.89  E-value=0.0027  Score=43.99  Aligned_cols=48  Identities=25%  Similarity=0.404  Sum_probs=37.2

Q ss_pred             EEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHHHcCccHHHh
Q psy4713           7 ILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQNGLEMDKL   58 (103)
Q Consensus         7 IiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~~~glDl~~L   58 (103)
                      ||.|+|..||||..++..+++.++   +.+++..+-.++ .++..|.+...+
T Consensus         2 iI~i~G~~GSGKstia~~la~~lg---~~~~~~~~~~~~-~~~~~g~~~~~~   49 (171)
T TIGR02173         2 IITISGPPGSGKTTVAKILAEKLS---LKLISAGDIFRE-LAAKMGLDLIEF   49 (171)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcC---CceecHHHHHHH-HHHHcCCCHHHH
Confidence            899999999999999999999985   445665554544 467778877664

Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.

>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]

Probab=96.75  E-value=0.0029  Score=48.99  Aligned_cols=51  Identities=22%  Similarity=0.397  Sum_probs=43.5

Q ss_pred             EEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHHHcCccHHHhcC
Q psy4713           6 LILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQNGLEMDKLLG   60 (103)
Q Consensus         6 lIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~~~glDl~~LL~   60 (103)
                      .+|.|||+.||||-=+|..|++.+|= .+  + =||-+=|+.|+++|+|+.+...
T Consensus         1 m~ItIsG~pGsG~TTva~~lAe~~gl-~~--v-saG~iFR~~A~e~gmsl~ef~~   51 (179)
T COG1102           1 MVITISGLPGSGKTTVARELAEHLGL-KL--V-SAGTIFREMARERGMSLEEFSR   51 (179)
T ss_pred             CEEEeccCCCCChhHHHHHHHHHhCC-ce--e-eccHHHHHHHHHcCCCHHHHHH
Confidence            37899999999999999999999983 22  2 2688999999999999998754

>PRK01184 hypothetical protein; Provisional

Probab=96.57  E-value=0.0051  Score=43.99  Aligned_cols=40  Identities=18%  Similarity=0.254  Sum_probs=33.1

Q ss_pred             EEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHH
Q psy4713           6 LILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAK   49 (103)
Q Consensus         6 lIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~   49 (103)
                      .||+++|..||||..++. +.+.+   .+.+++.++-+++++..
T Consensus         2 ~~i~l~G~~GsGKsT~a~-~~~~~---g~~~i~~~d~lr~~~~~   41 (184)
T PRK01184          2 KIIGVVGMPGSGKGEFSK-IAREM---GIPVVVMGDVIREEVKK   41 (184)
T ss_pred             cEEEEECCCCCCHHHHHH-HHHHc---CCcEEEhhHHHHHHHHH
Confidence            389999999999999987 45554   47889999999998754

>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family

Probab=96.53  E-value=0.0037  Score=44.30  Aligned_cols=39  Identities=15%  Similarity=0.271  Sum_probs=34.6

Q ss_pred             EEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHH
Q psy4713           7 ILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWA   48 (103)
Q Consensus         7 IiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA   48 (103)
                      ||+|.|.+||||.-++..|++.++   +..++.++-++++..
T Consensus         1 ~i~i~G~pGsGKst~a~~la~~~~---~~~is~~d~lr~~~~   39 (183)
T TIGR01359         1 VVFVLGGPGSGKGTQCAKIVENFG---FTHLSAGDLLRAEIK   39 (183)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHcC---CeEEECChHHHHHHh
Confidence            689999999999999999999985   778888888887766

This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=96.50  E-value=0.011  Score=39.89  Aligned_cols=30  Identities=30%  Similarity=0.579  Sum_probs=25.5

Q ss_pred             EEEEecCcCCchhHHHHHHHHHhcccceEEEec
Q psy4713           7 ILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRL   39 (103)
Q Consensus         7 IiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~i   39 (103)
                      ||++.|..||||.+++..|.+.++   +.+|+.
T Consensus         1 lii~~G~pgsGKSt~a~~l~~~~~---~~~i~~   30 (143)
T PF13671_consen    1 LIILCGPPGSGKSTLAKRLAKRLG---AVVISQ   30 (143)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHST---EEEEEH
T ss_pred             CEEEECCCCCCHHHHHHHHHHHCC---CEEEeH
Confidence            689999999999999999999986   445544

...

>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs

Probab=96.45  E-value=0.011  Score=41.61  Aligned_cols=54  Identities=19%  Similarity=0.176  Sum_probs=41.5

Q ss_pred             EEEEecCcCCchhHHHHHHHHHhcc--cceEEEecchhhHH--HHHHHcCccHHHhcC
Q psy4713           7 ILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIRLSAPIKS--HWAKQNGLEMDKLLG   60 (103)
Q Consensus         7 IiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~iS~piK~--~yA~~~glDl~~LL~   60 (103)
                      ++||+|..|+||--++-.+....-.  ..|..+++.++..+  +++...|.|++++..
T Consensus         1 ~~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~~~~~~~~~~~g~~~~~l~~   58 (187)
T cd01124           1 STLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESPEELIENAESLGWDLERLED   58 (187)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHcCCChHHHHh
Confidence            5899999999999988766554322  67888999877765  456678999988753

A related protein is found in archaea.

>PRK15453 phosphoribulokinase; Provisional

Probab=96.43  E-value=0.0043  Score=50.69  Aligned_cols=38  Identities=13%  Similarity=0.274  Sum_probs=32.3

Q ss_pred             CCCCeEEEEEecCcCCchhHHHHHHHHHhccc--ceEEEe
Q psy4713           1 MTQPKLILLFSGKRKSGKDFLTDYLLERIGSQ--HCAIIR   38 (103)
Q Consensus         1 ~~~pklIiL~sGKrksGKDy~a~~l~~~l~~~--~~~iv~   38 (103)
                      |+.++.||.|+|-+||||--+++.+...|+..  .+.++.
T Consensus         1 Ms~k~piI~ItG~SGsGKTTva~~l~~if~~~~~~~~vi~   40 (290)
T PRK15453          1 MSAKHPIIAVTGSSGAGTTTVKRAFEKIFRRENINAAVVE   40 (290)
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEEe
Confidence            88899999999999999999999999999764  344443

>PRK12338 hypothetical protein; Provisional

Probab=96.41  E-value=0.0054  Score=50.38  Aligned_cols=61  Identities=18%  Similarity=0.233  Sum_probs=45.1

Q ss_pred             CCCCeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHHHcCccHHHhcCCCCcH
Q psy4713           1 MTQPKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQNGLEMDKLLGATKYK   65 (103)
Q Consensus         1 ~~~pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~~~glDl~~LL~d~~YK   65 (103)
                      |+.| .||+++|-+||||--+|..|+.+++   +..+.-+|.+++......+-++.-.|..+.|-
T Consensus         1 m~~p-~ii~i~G~sGsGKST~a~~la~~l~---~~~~~~tD~~r~~~~~~~~~~~~P~l~~ssy~   61 (319)
T PRK12338          1 MRKP-YVILIGSASGIGKSTIASELARTLN---IKHLIETDFIREVVRGIIGKEYAPALHKSSYN   61 (319)
T ss_pred             CCCc-EEEEEECCCCCCHHHHHHHHHHHCC---CeEEccChHHHHHHcCCCCcccCchhhcccHH
Confidence            6655 7889999999999999999999986   44566688888865554444444556666553

>PRK04040 adenylate kinase; Provisional

Probab=96.40  E-value=0.019  Score=42.73  Aligned_cols=46  Identities=22%  Similarity=0.388  Sum_probs=38.2

Q ss_pred             EEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHHHcCc
Q psy4713           6 LILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQNGL   53 (103)
Q Consensus         6 lIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~~~gl   53 (103)
                      .+|+|+|-.||||-.++..|.+.+. ....++..++..++. |.+.|+
T Consensus         3 ~~i~v~G~pG~GKtt~~~~l~~~l~-~~~~~~~~g~~~~~~-a~~~g~   48 (188)
T PRK04040          3 KVVVVTGVPGVGKTTVLNKALEKLK-EDYKIVNFGDVMLEV-AKEEGL   48 (188)
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHHhc-cCCeEEecchHHHHH-HHHcCC
Confidence            4789999999999999999999995 246678888877554 788887

>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP)

Probab=96.29  E-value=0.0079  Score=42.62  Aligned_cols=52  Identities=19%  Similarity=0.273  Sum_probs=39.2

Q ss_pred             EEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHHH--cCccHHHhcCCC
Q psy4713           8 LLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQ--NGLEMDKLLGAT   62 (103)
Q Consensus         8 iL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~~--~glDl~~LL~d~   62 (103)
                      |+|+|..||||..++..|++.++   +..+++++=++++.+..  .|..+...+..+
T Consensus         2 I~i~G~pGsGKst~a~~La~~~~---~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~g   55 (194)
T cd01428           2 ILLLGPPGSGKGTQAERLAKKYG---LPHISTGDLLREEIASGTELGKKAKEYIDSG   55 (194)
T ss_pred             EEEECCCCCCHHHHHHHHHHHcC---CeEEECcHHHHHHHhcCChHHHHHHHHHHcC
Confidence            78999999999999999999974   77888888888776642  333344444433

This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.

>PRK14731 coaE dephospho-CoA kinase; Provisional

Probab=96.18  E-value=0.038  Score=41.30  Aligned_cols=34  Identities=26%  Similarity=0.538  Sum_probs=28.8

Q ss_pred             CCCCeEEEEEecCcCCchhHHHHHHHHHhcccceEEEe
Q psy4713           1 MTQPKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIR   38 (103)
Q Consensus         1 ~~~pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~   38 (103)
                      |...+++|.|||..||||-.+++.|.+ +|   +.|+.
T Consensus         1 ~~~~~~~igitG~igsGKSt~~~~l~~-~g---~~v~d   34 (208)
T PRK14731          1 MRSLPFLVGVTGGIGSGKSTVCRFLAE-MG---CELFE   34 (208)
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHH-CC---CeEEe
Confidence            778889999999999999999999987 43   55655

>PTZ00301 uridine kinase; Provisional

Probab=96.14  E-value=0.01  Score=45.28  Aligned_cols=37  Identities=22%  Similarity=0.291  Sum_probs=29.1

Q ss_pred             CeEEEEEecCcCCchhHHHHHHHHHhc----ccceEEEecc
Q psy4713           4 PKLILLFSGKRKSGKDFLTDYLLERIG----SQHCAIIRLS   40 (103)
Q Consensus         4 pklIiL~sGKrksGKDy~a~~l~~~l~----~~~~~iv~iS   40 (103)
                      |..||.|+|-+||||-.+|..|++.+.    ...+.+++.-
T Consensus         2 ~~~iIgIaG~SgSGKTTla~~l~~~l~~~~~~~~~~vi~~D   42 (210)
T PTZ00301          2 PCTVIGISGASGSGKSSLSTNIVSELMAHCGPVSIGVICED   42 (210)
T ss_pred             CCEEEEEECCCcCCHHHHHHHHHHHHHhhcCCCeEEEeCCC
Confidence            678999999999999999999988773    2344455543

>PRK00300 gmk guanylate kinase; Provisional

Probab=96.12  E-value=0.0062  Score=44.00  Aligned_cols=30  Identities=37%  Similarity=0.511  Sum_probs=27.9

Q ss_pred             CCCCeEEEEEecCcCCchhHHHHHHHHHhc
Q psy4713           1 MTQPKLILLFSGKRKSGKDFLTDYLLERIG   30 (103)
Q Consensus         1 ~~~pklIiL~sGKrksGKDy~a~~l~~~l~   30 (103)
                      |++|.-+|+|+|.+||||+-++..|...+.
T Consensus         1 ~~~~g~~i~i~G~sGsGKstl~~~l~~~~~   30 (205)
T PRK00300          1 MMRRGLLIVLSGPSGAGKSTLVKALLERDP   30 (205)
T ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence            888999999999999999999999998874

>PLN02200 adenylate kinase family protein

Probab=96.03  E-value=0.017  Score=44.47  Aligned_cols=43  Identities=19%  Similarity=0.264  Sum_probs=35.9

Q ss_pred             CeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHH
Q psy4713           4 PKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAK   49 (103)
Q Consensus         4 pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~   49 (103)
                      +..||+|+|..||||.-++..|++.++   +..++.++-++++-+.
T Consensus        42 ~~~ii~I~G~PGSGKsT~a~~La~~~g---~~his~gdllR~~i~~   84 (234)
T PLN02200         42 TPFITFVLGGPGSGKGTQCEKIVETFG---FKHLSAGDLLRREIAS   84 (234)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHhC---CeEEEccHHHHHHHhc
Confidence            347899999999999999999999985   5568888888876543

>PRK00081 coaE dephospho-CoA kinase; Reviewed

Probab=95.98  E-value=0.076  Score=39.19  Aligned_cols=39  Identities=26%  Similarity=0.366  Sum_probs=30.7

Q ss_pred             EEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHH
Q psy4713           6 LILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWA   48 (103)
Q Consensus         6 lIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA   48 (103)
                      .+|.+||..||||..+++.|.+ +|   +.++..-.-.++.|.
T Consensus         3 ~~i~ltG~~gsGKst~~~~l~~-~g---~~~i~~D~~~~~~~~   41 (194)
T PRK00081          3 LIIGLTGGIGSGKSTVANLFAE-LG---APVIDADAIAHEVVE   41 (194)
T ss_pred             eEEEEECCCCCCHHHHHHHHHH-cC---CEEEEecHHHHHHhh
Confidence            5799999999999999999988 65   566666555555554

>PRK07667 uridine kinase; Provisional

Probab=95.84  E-value=0.016  Score=42.59  Aligned_cols=43  Identities=23%  Similarity=0.299  Sum_probs=35.4

Q ss_pred             CCCeEEEEEecCcCCchhHHHHHHHHHhcc--cceEEEecchhhH
Q psy4713           2 TQPKLILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIRLSAPIK   44 (103)
Q Consensus         2 ~~pklIiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~iS~piK   44 (103)
                      ...++||.|+|-+||||-.+|+.|++.++.  ..+.++++.+=.+
T Consensus        14 ~~~~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~~~   58 (193)
T PRK07667         14 KENRFILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDYIV   58 (193)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCcccc
Confidence            356799999999999999999999999975  3567788777444

>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family

Probab=95.84  E-value=0.04  Score=40.76  Aligned_cols=58  Identities=17%  Similarity=0.397  Sum_probs=44.6

Q ss_pred             CeEEEEEecCcCCch-hHHHHHHHHHhcc-cceEEEecchhhHH--HHHHHcCccHHHhcCC
Q psy4713           4 PKLILLFSGKRKSGK-DFLTDYLLERIGS-QHCAIIRLSAPIKS--HWAKQNGLEMDKLLGA   61 (103)
Q Consensus         4 pklIiL~sGKrksGK-Dy~a~~l~~~l~~-~~~~iv~iS~piK~--~yA~~~glDl~~LL~d   61 (103)
                      +.-+++|+|..|+|| -++...+.+.+.. ..|..+++..|..+  +++.+.|.|+++++..
T Consensus        15 ~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~~~~~l~~~~~~~~~~~~~~~~~   76 (224)
T TIGR03880        15 EGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEEREERILGYAKSKGWDLEDYIDK   76 (224)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHcCCChHHHHhC
Confidence            456889999999999 4555555555544 67888999999877  6777899999887544

This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.

>PRK04328 hypothetical protein; Provisional

Probab=95.82  E-value=0.039  Score=42.41  Aligned_cols=59  Identities=17%  Similarity=0.243  Sum_probs=44.0

Q ss_pred             CeEEEEEecCcCCchhH-HHHHHHHHhcc-cceEEEecchhhHH--HHHHHcCccHHHhcCCC
Q psy4713           4 PKLILLFSGKRKSGKDF-LTDYLLERIGS-QHCAIIRLSAPIKS--HWAKQNGLEMDKLLGAT   62 (103)
Q Consensus         4 pklIiL~sGKrksGKDy-~a~~l~~~l~~-~~~~iv~iS~piK~--~yA~~~glDl~~LL~d~   62 (103)
                      +.-++||+|..||||-- +...+...+.. ..|..+++.++..+  +.|.+.|.|+++++.++
T Consensus        22 ~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ee~~~~i~~~~~~~g~d~~~~~~~~   84 (249)
T PRK04328         22 ERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVALEEHPVQVRRNMRQFGWDVRKYEEEG   84 (249)
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEeeCCHHHHHHHHHHcCCCHHHHhhcC
Confidence            46789999999999955 44455555544 68888998777765  45678999999886543

>PRK04182 cytidylate kinase; Provisional

Probab=95.77  E-value=0.031  Score=38.89  Aligned_cols=48  Identities=27%  Similarity=0.465  Sum_probs=36.5

Q ss_pred             EEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHHHcCccHHHh
Q psy4713           7 ILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQNGLEMDKL   58 (103)
Q Consensus         7 IiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~~~glDl~~L   58 (103)
                      ||+|+|-.||||--++..|+++++   ..++.. +-+=++.++..|.++.++
T Consensus         2 ~I~i~G~~GsGKstia~~la~~lg---~~~id~-~~~~~~~~~~~g~~~~~~   49 (180)
T PRK04182          2 IITISGPPGSGKTTVARLLAEKLG---LKHVSA-GEIFRELAKERGMSLEEF   49 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcC---CcEecH-HHHHHHHHHHcCCCHHHH
Confidence            799999999999999999999986   334443 333445667788887665

>PRK06762 hypothetical protein; Provisional

Probab=95.72  E-value=0.03  Score=39.29  Aligned_cols=39  Identities=21%  Similarity=0.451  Sum_probs=29.2

Q ss_pred             EEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHH
Q psy4713           6 LILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSH   46 (103)
Q Consensus         6 lIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~   46 (103)
                      .+|+|+|..||||-.+|..|.+.++. .+.+++ ++.+++.
T Consensus         3 ~li~i~G~~GsGKST~A~~L~~~l~~-~~~~i~-~D~~r~~   41 (166)
T PRK06762          3 TLIIIRGNSGSGKTTIAKQLQERLGR-GTLLVS-QDVVRRD   41 (166)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCC-CeEEec-HHHHHHH
Confidence            36677999999999999999999963 455554 3555543

>PRK08233 hypothetical protein; Provisional

Probab=95.70  E-value=0.022  Score=39.88  Aligned_cols=27  Identities=22%  Similarity=0.334  Sum_probs=24.8

Q ss_pred             eEEEEEecCcCCchhHHHHHHHHHhcc
Q psy4713           5 KLILLFSGKRKSGKDFLTDYLLERIGS   31 (103)
Q Consensus         5 klIiL~sGKrksGKDy~a~~l~~~l~~   31 (103)
                      ..||.|+|-+||||-.+|+.|+..|+.
T Consensus         3 ~~iI~I~G~~GsGKtTla~~L~~~l~~   29 (182)
T PRK08233          3 TKIITIAAVSGGGKTTLTERLTHKLKN   29 (182)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhhCCC
Confidence            589999999999999999999999963

>PF03976 PPK2: Polyphosphate kinase 2 (PPK2); InterPro: IPR022488 This presumed domain is found in one or two copies per protein

Probab=95.69  E-value=0.014  Score=45.59  Aligned_cols=45  Identities=20%  Similarity=0.360  Sum_probs=37.5

Q ss_pred             eEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHH
Q psy4713           5 KLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAK   49 (103)
Q Consensus         5 klIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~   49 (103)
                      ++||||.|=-+||||-+.+.|.+.+....++|.++..|+-++-+.
T Consensus        31 ~vlIl~eG~d~sGKg~~I~~l~~~lDPR~~~v~~~~~pt~eE~~~   75 (228)
T PF03976_consen   31 PVLILFEGWDASGKGGTINRLIEWLDPRGFRVHAFGKPTDEELRR   75 (228)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHCCS-GGGEEEEE-SS--HHHHTS
T ss_pred             cEEEEEeccccCCchHHHHHHHHhCCCCeeEEEeCCCCChhHcCC
Confidence            499999999999999999999999999899999999998887653

The domain is about 230 amino acids in length and has many conserved motifs, it has polyphosphate kinase activity [, ].; PDB: 3CZP_A 3RHF_D 3CZQ_B.

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=95.69  E-value=0.02  Score=37.44  Aligned_cols=32  Identities=25%  Similarity=0.470  Sum_probs=26.7

Q ss_pred             EEEecCcCCchhHHHHHHHHHhcccceEEEecchh
Q psy4713           8 LLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAP   42 (103)
Q Consensus         8 iL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~p   42 (103)
                      ||++|.+|+||=+++..+.+.++   ..++.++.+
T Consensus         1 ill~G~~G~GKT~l~~~la~~l~---~~~~~i~~~   32 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQYLG---FPFIEIDGS   32 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHHHTT---SEEEEEETT
T ss_pred             CEEECcCCCCeeHHHHHHHhhcc---ccccccccc
Confidence            78999999999999999999985   455555544

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=95.65  E-value=0.0081  Score=44.28  Aligned_cols=81  Identities=20%  Similarity=0.192  Sum_probs=52.5

Q ss_pred             CCeEEEEEecCcCCchhHHHHHHHHHhc-ccceEEEecchhhHHHHHHHcCccHHHhcCCCCcHHHhHHHHHHHHHHHhc
Q psy4713           3 QPKLILLFSGKRKSGKDFLTDYLLERIG-SQHCAIIRLSAPIKSHWAKQNGLEMDKLLGATKYKEKYRAEMITWSEAERR   81 (103)
Q Consensus         3 ~pklIiL~sGKrksGKDy~a~~l~~~l~-~~~~~iv~iS~piK~~yA~~~glDl~~LL~d~~YKE~~R~~mi~wge~~R~   81 (103)
                      +|+..+||.|.+|+||=+++..|.+.+. ......+++--+.=.+ ...-.--+.+|+...+.--.++..=+-+.+|.=+
T Consensus         1 ~p~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~-~~~~~~~~~~l~~~~~~~v~~~~~gVVllDEidK   79 (171)
T PF07724_consen    1 RPKSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSE-GDDVESSVSKLLGSPPGYVGAEEGGVVLLDEIDK   79 (171)
T ss_dssp             S-SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCS-HHHCSCHCHHHHHHTTCHHHHHHHTEEEEETGGG
T ss_pred             CCEEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccc-cchHHhhhhhhhhcccceeeccchhhhhhHHHhh
Confidence            5899999999999999999999999998 5444554443332221 2222223456666555555555555666666666


Q ss_pred             cCh
Q psy4713          82 KDN   84 (103)
Q Consensus        82 ~D~   84 (103)
                      .+|
T Consensus        80 a~~   82 (171)
T PF07724_consen   80 AHP   82 (171)
T ss_dssp             CSH
T ss_pred             ccc
Confidence            666

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....

>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2

Probab=95.50  E-value=0.02  Score=41.95  Aligned_cols=38  Identities=18%  Similarity=0.199  Sum_probs=31.3

Q ss_pred             EEEEecCcCCchhHHHHHHHHHhcc--cceEEEecchhhH
Q psy4713           7 ILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIRLSAPIK   44 (103)
Q Consensus         7 IiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~iS~piK   44 (103)
                      ||.|+|.+||||-.+|+.|+..+..  .++.++++-+=.|
T Consensus         1 ii~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~~   40 (179)
T cd02028           1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYYV   40 (179)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhccc
Confidence            6899999999999999999999964  4677777665444

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).

>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H

Probab=95.49  E-value=0.0074  Score=41.83  Aligned_cols=26  Identities=27%  Similarity=0.394  Sum_probs=22.1

Q ss_pred             EEEEEecCcCCchhHHHHHHHHHhcc
Q psy4713           6 LILLFSGKRKSGKDFLTDYLLERIGS   31 (103)
Q Consensus         6 lIiL~sGKrksGKDy~a~~l~~~l~~   31 (103)
                      .-|||+|++|+||.++|..|+..-..
T Consensus        22 ~pvli~GE~GtGK~~~A~~lh~~~~~   47 (138)
T PF14532_consen   22 SPVLITGEPGTGKSLLARALHRYSGR   47 (138)
T ss_dssp             S-EEEECCTTSSHHHHHHCCHHTTTT
T ss_pred             CcEEEEcCCCCCHHHHHHHHHhhcCc
Confidence            34789999999999999999998654

>PRK14730 coaE dephospho-CoA kinase; Provisional

Probab=95.45  E-value=0.11  Score=38.70  Aligned_cols=60  Identities=18%  Similarity=0.226  Sum_probs=41.1

Q ss_pred             EEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHHHcCccHHHhcCCCCcHHHhHHHHHHHHHHHhccC
Q psy4713           7 ILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQNGLEMDKLLGATKYKEKYRAEMITWSEAERRKD   83 (103)
Q Consensus         7 IiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~~~glDl~~LL~d~~YKE~~R~~mi~wge~~R~~D   83 (103)
                      +|.+||..||||-.+++.+.+.+|   +.+++--+-.++.|.+            +  .+.|+...-.||++....|
T Consensus         3 ~i~itG~~gsGKst~~~~l~~~~g---~~~i~~D~~~~~~~~~------------~--~~~~~~l~~~fg~~i~~~~   62 (195)
T PRK14730          3 RIGLTGGIASGKSTVGNYLAQQKG---IPILDADIYAREALAP------------G--SPILKAILQRYGNKIIDPD   62 (195)
T ss_pred             EEEEECCCCCCHHHHHHHHHHhhC---CeEeeCcHHHHHHHhc------------C--chHHHHHHHHhCHHhcCCC
Confidence            799999999999999999998875   6666655545555543            1  2344455556666665443

>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]

Probab=95.39  E-value=0.06  Score=41.23  Aligned_cols=41  Identities=24%  Similarity=0.320  Sum_probs=35.4

Q ss_pred             eEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHH
Q psy4713           5 KLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAK   49 (103)
Q Consensus         5 klIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~   49 (103)
                      .+||-+||.-+|||.-+++.+.+ +|   +.|+.-....++.|.+
T Consensus         2 ~~iIglTG~igsGKStva~~~~~-~G---~~vidaD~v~r~~~~~   42 (201)
T COG0237           2 MLIIGLTGGIGSGKSTVAKILAE-LG---FPVIDADDVAREVVEP   42 (201)
T ss_pred             ceEEEEecCCCCCHHHHHHHHHH-cC---CeEEEccHHHHHHHhc
Confidence            47899999999999999999999 54   7788888888877764

>TIGR00455 apsK adenylylsulfate kinase (apsK)

Probab=95.38  E-value=0.076  Score=38.12  Aligned_cols=44  Identities=16%  Similarity=0.313  Sum_probs=32.1

Q ss_pred             CCCCeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecc-hhhH
Q psy4713           1 MTQPKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLS-APIK   44 (103)
Q Consensus         1 ~~~pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS-~piK   44 (103)
                      |.++..+|+++|.+||||--++..|...+......++.++ +++.
T Consensus        14 ~~~~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~~r   58 (184)
T TIGR00455        14 NGHRGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDNVR   58 (184)
T ss_pred             hCCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECChHHH
Confidence            4467789999999999999999999999854333334443 3444

Important residue (active site in E.coli) is residue 100 of the seed alignment.

>PRK14527 adenylate kinase; Provisional

Probab=95.37  E-value=0.022  Score=41.37  Aligned_cols=44  Identities=18%  Similarity=0.357  Sum_probs=34.0

Q ss_pred             CCeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHH
Q psy4713           3 QPKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAK   49 (103)
Q Consensus         3 ~pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~   49 (103)
                      .+.-||+|.|..||||.-.+..|.+.++   +..++..+-+.++.+.
T Consensus         4 ~~~~~i~i~G~pGsGKsT~a~~La~~~~---~~~is~gd~~r~~~~~   47 (191)
T PRK14527          4 TKNKVVIFLGPPGAGKGTQAERLAQELG---LKKLSTGDILRDHVAR   47 (191)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHhC---CCCCCccHHHHHHHhc
Confidence            3445788999999999999999999875   5556667777666543

>TIGR03707 PPK2_P_aer polyphosphate kinase 2, PA0141 family

Probab=95.34  E-value=0.028  Score=44.15  Aligned_cols=45  Identities=16%  Similarity=0.411  Sum_probs=41.7

Q ss_pred             CeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHH
Q psy4713           4 PKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWA   48 (103)
Q Consensus         4 pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA   48 (103)
                      -.+||||.|=-+||||-+.+.+.+.+...-+.|.++..|+.+|-+
T Consensus        30 ~~vlIv~eG~DaAGKg~~I~~l~~~lDPRg~~v~~~~~pt~eE~~   74 (230)
T TIGR03707        30 ARVVIVFEGRDAAGKGGTIKRITEHLNPRGARVVALPKPSDRERT   74 (230)
T ss_pred             CCEEEEEeCCCCCCchHHHHHHHHhcCCCeeEEEeCCCCCHHHHc
Confidence            479999999999999999999999999999999999999988754

Members of this protein family are designated polyphosphate kinase 2 (PPK2) after the characterized protein in Pseudomonas aeruginosa. This family comprises one of three well-separated clades in the larger family described by Pfam model pfam03976. PA0141 from this family has been shown capable of operating in reverse, with GDP preferred (over ADP) as a substrate, producing GTP (or ATP) by transfer of a phosphate residue from polyphosphate. Most species with a member of this family also encode a polyphosphate kinase 1 (PPK1).

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=95.32  E-value=0.034  Score=35.52  Aligned_cols=37  Identities=22%  Similarity=0.288  Sum_probs=27.8

Q ss_pred             CeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecc
Q psy4713           4 PKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLS   40 (103)
Q Consensus         4 pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS   40 (103)
                      +...++|+|.+|+||-.++..+...+......++.++
T Consensus        18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~   54 (151)
T cd00009          18 PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLN   54 (151)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEe
Confidence            3457889999999999999999999854333344333

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]

Probab=95.31  E-value=0.035  Score=43.70  Aligned_cols=38  Identities=26%  Similarity=0.441  Sum_probs=32.2

Q ss_pred             CCCCe---EEEEEecCcCCchhHHHHHHHHHhcccceEEEe
Q psy4713           1 MTQPK---LILLFSGKRKSGKDFLTDYLLERIGSQHCAIIR   38 (103)
Q Consensus         1 ~~~pk---lIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~   38 (103)
                      |+.+.   +||.|+|-+||||==+|..|.+.|+...+.+++
T Consensus         1 m~~~~~~~iiIgIaG~SgSGKTTva~~l~~~~~~~~~~~I~   41 (218)
T COG0572           1 MMKKPEKVIIIGIAGGSGSGKTTVAKELSEQLGVEKVVVIS   41 (218)
T ss_pred             CCCCCCceEEEEEeCCCCCCHHHHHHHHHHHhCcCcceEee
Confidence            45554   999999999999999999999999966666665

>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical

Probab=95.29  E-value=0.054  Score=39.98  Aligned_cols=57  Identities=19%  Similarity=0.303  Sum_probs=40.5

Q ss_pred             eEEEEEecCcCCchhHHHHHHH-HHhc--ccceEEEecchhhHH--HHHHHcCccHHHhcCC
Q psy4713           5 KLILLFSGKRKSGKDFLTDYLL-ERIG--SQHCAIIRLSAPIKS--HWAKQNGLEMDKLLGA   61 (103)
Q Consensus         5 klIiL~sGKrksGKDy~a~~l~-~~l~--~~~~~iv~iS~piK~--~yA~~~glDl~~LL~d   61 (103)
                      .-++|++|.+||||--++..+. +.+.  ..+|..|++.+|-.+  +.+...|.|++++...
T Consensus        19 gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~~~s~g~d~~~~~~~   80 (226)
T PF06745_consen   19 GSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIENMKSFGWDLEEYEDS   80 (226)
T ss_dssp             TSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHHHHTTTS-HHHHHHT
T ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHHHHHcCCcHHHHhhc
Confidence            3579999999999998877654 4433  378999999999874  4555789999987654

More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....

>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor

Probab=95.26  E-value=0.022  Score=41.85  Aligned_cols=35  Identities=17%  Similarity=0.314  Sum_probs=25.4

Q ss_pred             EEEEEecCcCCchhHHHHHHHHHhccc--ceEEEecc
Q psy4713           6 LILLFSGKRKSGKDFLTDYLLERIGSQ--HCAIIRLS   40 (103)
Q Consensus         6 lIiL~sGKrksGKDy~a~~l~~~l~~~--~~~iv~iS   40 (103)
                      .=|||+|++|+||..+|..+++.....  ....|..+
T Consensus        23 ~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~   59 (168)
T PF00158_consen   23 LPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCA   59 (168)
T ss_dssp             S-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETT
T ss_pred             CCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehh
Confidence            447899999999999999999976542  33344444

These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....

>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS)

Probab=95.23  E-value=0.037  Score=39.23  Aligned_cols=42  Identities=17%  Similarity=0.267  Sum_probs=30.3

Q ss_pred             EEEEecCcCCchhHHHHHHHHHhcccceEEEec-chhhHHHHH
Q psy4713           7 ILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRL-SAPIKSHWA   48 (103)
Q Consensus         7 IiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~i-S~piK~~yA   48 (103)
                      ||+|+|.+||||-.++..|...+......++.| ++++++...
T Consensus         1 ~i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~r~~l~   43 (149)
T cd02027           1 VIWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNVRHGLN   43 (149)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHHHHhhh
Confidence            589999999999999999999985433233333 466665443

The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.

>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda

Probab=95.20  E-value=0.031  Score=40.59  Aligned_cols=28  Identities=21%  Similarity=0.192  Sum_probs=24.3

Q ss_pred             CeEEEEEecCcCCchhHHHHHHHHHhcc
Q psy4713           4 PKLILLFSGKRKSGKDFLTDYLLERIGS   31 (103)
Q Consensus         4 pklIiL~sGKrksGKDy~a~~l~~~l~~   31 (103)
                      ..-.|+|+|++|+||-+++..+...+..
T Consensus        37 ~~~~lll~G~~G~GKT~la~~~~~~~~~   64 (226)
T TIGR03420        37 GDRFLYLWGESGSGKSHLLQAACAAAEE   64 (226)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHHHh
Confidence            3457899999999999999999988764

Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.

>TIGR01351 adk adenylate kinases

Probab=95.17  E-value=0.034  Score=41.05  Aligned_cols=53  Identities=17%  Similarity=0.233  Sum_probs=40.4

Q ss_pred             EEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHHH--cCccHHHhcCCCC
Q psy4713           8 LLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQ--NGLEMDKLLGATK   63 (103)
Q Consensus         8 iL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~~--~glDl~~LL~d~~   63 (103)
                      |+|.|..||||.-+|..|++.++   +..++.++-++++....  .|..+.+++..+.
T Consensus         2 I~i~G~pGsGKsT~a~~La~~~g---~~~is~gdllr~~~~~~~~~~~~~~~~~~~g~   56 (210)
T TIGR01351         2 LVLLGPPGSGKGTQAKRIAEKYG---LPHISTGDLLRAEIKAGTPLGKKAKEYMEKGE   56 (210)
T ss_pred             EEEECCCCCCHHHHHHHHHHHcC---CCeeehhHHHHHhhccccHHHHHHHHHHhCCC
Confidence            67899999999999999999874   78888888888776542  3444555555544

Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.

>PRK12339 2-phosphoglycerate kinase; Provisional

Probab=95.16  E-value=0.067  Score=40.40  Aligned_cols=47  Identities=15%  Similarity=0.169  Sum_probs=38.4

Q ss_pred             eEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHHHcCcc
Q psy4713           5 KLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQNGLE   54 (103)
Q Consensus         5 klIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~~~glD   54 (103)
                      ..+|+|+|-+||||--++..|+++++   ..++..+|.+++.-....+.+
T Consensus         3 ~~~i~i~G~~G~GKst~a~~l~~~~~---~~~~~~~D~~r~~~r~~~~~~   49 (197)
T PRK12339          3 STIHFIGGIPGVGKTSISGYIARHRA---IDIVLSGDYLREFLRPYVDDE   49 (197)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhcC---CeEEehhHHHHHHHHHhcCCC
Confidence            45889999999999999999999975   566788888877777655543

>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2

Probab=95.14  E-value=0.042  Score=39.64  Aligned_cols=25  Identities=24%  Similarity=0.402  Sum_probs=21.7

Q ss_pred             EEEEecCcCCchhHHHHHHHHHhcc
Q psy4713           7 ILLFSGKRKSGKDFLTDYLLERIGS   31 (103)
Q Consensus         7 IiL~sGKrksGKDy~a~~l~~~l~~   31 (103)
                      +|+++|.+||||+=+++.|.+.+..
T Consensus         4 ~ivl~Gpsg~GK~~l~~~L~~~~~~   28 (183)
T PF00625_consen    4 PIVLVGPSGSGKSTLAKRLIQEFPD   28 (183)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHHSTT
T ss_pred             EEEEECCCCCCHHHHHHHHHHhccc
Confidence            4556999999999999999998865

7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....

>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal

Probab=95.13  E-value=0.048  Score=41.25  Aligned_cols=25  Identities=16%  Similarity=0.440  Sum_probs=23.1

Q ss_pred             EEEEecCcCCchhHHHHHHHHHhcc
Q psy4713           7 ILLFSGKRKSGKDFLTDYLLERIGS   31 (103)
Q Consensus         7 IiL~sGKrksGKDy~a~~l~~~l~~   31 (103)
                      +|+|+|-.||||-.+|..|++.+..
T Consensus         1 LIvl~G~pGSGKST~a~~La~~l~~   25 (249)
T TIGR03574         1 LIILTGLPGVGKSTFSKELAKKLSE   25 (249)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHHHH
Confidence            5899999999999999999999965

Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.

>PRK07429 phosphoribulokinase; Provisional

Probab=95.09  E-value=0.045  Score=44.55  Aligned_cols=41  Identities=20%  Similarity=0.296  Sum_probs=35.1

Q ss_pred             CCCCeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecch
Q psy4713           1 MTQPKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSA   41 (103)
Q Consensus         1 ~~~pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~   41 (103)
                      |...++||-|+|.+||||--+++.|...|+...+.++.+-+
T Consensus         4 ~~~~~~IIgI~G~SGSGKSTla~~L~~ll~~~~~~vi~~Dd   44 (327)
T PRK07429          4 MPDRPVLLGVAGDSGCGKTTFLRGLADLLGEELVTVICTDD   44 (327)
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHhHhccCceEEEEecc
Confidence            45677999999999999999999999999877777777643

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=95.06  E-value=0.028  Score=36.64  Aligned_cols=22  Identities=36%  Similarity=0.440  Sum_probs=21.2

Q ss_pred             EEEecCcCCchhHHHHHHHHHh
Q psy4713           8 LLFSGKRKSGKDFLTDYLLERI   29 (103)
Q Consensus         8 iL~sGKrksGKDy~a~~l~~~l   29 (103)
                      |+|+|..||||--++..|++++
T Consensus         1 I~i~G~~GsGKtTia~~L~~~~   22 (129)
T PF13238_consen    1 IGISGIPGSGKTTIAKELAERL   22 (129)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHH
T ss_pred             CEEECCCCCCHHHHHHHHHHHH
Confidence            7899999999999999999998

...

>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B

Probab=95.04  E-value=0.09  Score=34.72  Aligned_cols=78  Identities=21%  Similarity=0.230  Sum_probs=43.9

Q ss_pred             CeEEEEEecCcCCchhHHHHHHHHHhccc-----ceEEEecchhhHHHHHHHcCccHHHhcCCC---CcHHHhHHHHHHH
Q psy4713           4 PKLILLFSGKRKSGKDFLTDYLLERIGSQ-----HCAIIRLSAPIKSHWAKQNGLEMDKLLGAT---KYKEKYRAEMITW   75 (103)
Q Consensus         4 pklIiL~sGKrksGKDy~a~~l~~~l~~~-----~~~iv~iS~piK~~yA~~~glDl~~LL~d~---~YKE~~R~~mi~w   75 (103)
                      .+-+++|+|++||||=.+++.+...+...     ...++.+.-|-......-...-++.+-...   ..-+..+..++++
T Consensus         3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~   82 (131)
T PF13401_consen    3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDA   82 (131)
T ss_dssp             ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHH
T ss_pred             CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHH
Confidence            35678999999999999999999988642     566667666655422221111222222222   2345555677776


Q ss_pred             HHHHhc
Q psy4713          76 SEAERR   81 (103)
Q Consensus        76 ge~~R~   81 (103)
                      .+..+.
T Consensus        83 l~~~~~   88 (131)
T PF13401_consen   83 LDRRRV   88 (131)
T ss_dssp             HHHCTE
T ss_pred             HHhcCC
Confidence            666554

>PRK14530 adenylate kinase; Provisional

Probab=95.04  E-value=0.061  Score=39.83  Aligned_cols=41  Identities=24%  Similarity=0.485  Sum_probs=33.0

Q ss_pred             CCCCeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHH
Q psy4713           1 MTQPKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSH   46 (103)
Q Consensus         1 ~~~pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~   46 (103)
                      |+.|+  |+|.|-+||||.-++..|++.++   +..++..+-++++
T Consensus         1 ~~~~~--I~i~G~pGsGKsT~~~~La~~~~---~~~i~~g~~lr~~   41 (215)
T PRK14530          1 MSQPR--ILLLGAPGAGKGTQSSNLAEEFG---VEHVTTGDALRAN   41 (215)
T ss_pred             CCCCE--EEEECCCCCCHHHHHHHHHHHhC---CeEEeccHHHHHh
Confidence            67775  66789999999999999999985   5566777776654

>PRK06067 flagellar accessory protein FlaH; Validated

Probab=95.04  E-value=0.099  Score=38.99  Aligned_cols=58  Identities=14%  Similarity=0.221  Sum_probs=43.7

Q ss_pred             CeEEEEEecCcCCchhHHHHHHHHH-hcc-cceEEEecchhhHHHH--HHHcCccHHHhcCC
Q psy4713           4 PKLILLFSGKRKSGKDFLTDYLLER-IGS-QHCAIIRLSAPIKSHW--AKQNGLEMDKLLGA   61 (103)
Q Consensus         4 pklIiL~sGKrksGKDy~a~~l~~~-l~~-~~~~iv~iS~piK~~y--A~~~glDl~~LL~d   61 (103)
                      +.-+++|+|..||||-.++..+.-. +.. ..|..++++++..+..  +...|.|+++.+.+
T Consensus        24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~~~~~~~~~~~~g~~~~~~~~~   85 (234)
T PRK06067         24 FPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENTSKSYLKQMESVKIDISDFFLW   85 (234)
T ss_pred             CCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHHHHHCCCChhHHHhC
Confidence            4568899999999999999887443 333 6888999988876533  34789999887543

>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins

Probab=95.03  E-value=0.033  Score=40.76  Aligned_cols=28  Identities=29%  Similarity=0.548  Sum_probs=25.3

Q ss_pred             CCeEEEEEecCcCCchhHHHHHHHHHhc
Q psy4713           3 QPKLILLFSGKRKSGKDFLTDYLLERIG   30 (103)
Q Consensus         3 ~pklIiL~sGKrksGKDy~a~~l~~~l~   30 (103)
                      +..||+-|.|-+|.||.|++.+|++.+=
T Consensus        51 ~KpLVlSfHG~tGtGKn~v~~liA~~ly   78 (127)
T PF06309_consen   51 RKPLVLSFHGWTGTGKNFVSRLIAEHLY   78 (127)
T ss_pred             CCCEEEEeecCCCCcHHHHHHHHHHHHH
Confidence            4569999999999999999999999963

Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor

>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants

Probab=95.01  E-value=0.046  Score=37.19  Aligned_cols=45  Identities=18%  Similarity=0.423  Sum_probs=31.5

Q ss_pred             EEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHHHcCccHHHhc
Q psy4713           8 LLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQNGLEMDKLL   59 (103)
Q Consensus         8 iL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~~~glDl~~LL   59 (103)
                      |+++|-+||||..++..|++.++   ...++...-+++.    +|.++.++.
T Consensus         2 i~l~G~~GsGKstla~~la~~l~---~~~~~~d~~~~~~----~~~~~~~~~   46 (154)
T cd00464           2 IVLIGMMGAGKTTVGRLLAKALG---LPFVDLDELIEQR----AGMSIPEIF   46 (154)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHhC---CCEEEchHHHHHH----cCCCHHHHH
Confidence            78999999999999999999985   4455555444333    344554443

Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.

>PRK03846 adenylylsulfate kinase; Provisional

Probab=95.00  E-value=0.05  Score=39.91  Aligned_cols=44  Identities=20%  Similarity=0.289  Sum_probs=30.6

Q ss_pred             CCeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecc-hhhHHH
Q psy4713           3 QPKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLS-APIKSH   46 (103)
Q Consensus         3 ~pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS-~piK~~   46 (103)
                      .+..+|.|+|.+||||--++..|...+......++.|. +++...
T Consensus        22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~~~   66 (198)
T PRK03846         22 HKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVRHG   66 (198)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHHhh
Confidence            34568889999999999999999998854322233342 444433

>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor

Probab=94.98  E-value=0.027  Score=37.86  Aligned_cols=32  Identities=22%  Similarity=0.427  Sum_probs=26.1

Q ss_pred             EEEEecCcCCchhHHHHHHHHHhcccceEEEecch
Q psy4713           7 ILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSA   41 (103)
Q Consensus         7 IiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~   41 (103)
                      ||.|+|..||||.-++..|...++   ...+..++
T Consensus         1 ~I~i~G~~GsGKst~a~~la~~~~---~~~~~~~~   32 (147)
T cd02020           1 IIAIDGPAGSGKSTVAKLLAKKLG---LPYLDTGG   32 (147)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhC---Cceecccc
Confidence            689999999999999999999986   33444443

>PRK14531 adenylate kinase; Provisional

Probab=94.93  E-value=0.057  Score=39.14  Aligned_cols=40  Identities=25%  Similarity=0.242  Sum_probs=34.1

Q ss_pred             EEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHH
Q psy4713           7 ILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAK   49 (103)
Q Consensus         7 IiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~   49 (103)
                      .|+|.|.+||||.-++..|++.++   +..++.++-++.+-+.
T Consensus         4 ~i~i~G~pGsGKsT~~~~la~~~g---~~~is~gd~lr~~~~~   43 (183)
T PRK14531          4 RLLFLGPPGAGKGTQAARLCAAHG---LRHLSTGDLLRSEVAA   43 (183)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC---CCeEecccHHHHHHhc
Confidence            478899999999999999999985   6678888888877654

>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=94.86  E-value=0.055  Score=36.78  Aligned_cols=34  Identities=26%  Similarity=0.336  Sum_probs=27.5

Q ss_pred             EEEecCcCCchhHHHHHHHHHhcccceEEEecchh
Q psy4713           8 LLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAP   42 (103)
Q Consensus         8 iL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~p   42 (103)
                      |++.|.+|+||-.++..+...++ ..+..+.++.-
T Consensus         2 vlL~G~~G~GKt~l~~~la~~~~-~~~~~i~~~~~   35 (139)
T PF07728_consen    2 VLLVGPPGTGKTTLARELAALLG-RPVIRINCSSD   35 (139)
T ss_dssp             EEEEESSSSSHHHHHHHHHHHHT-CEEEEEE-TTT
T ss_pred             EEEECCCCCCHHHHHHHHHHHhh-cceEEEEeccc
Confidence            68999999999999999999995 55666666653

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.

>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2

Probab=94.84  E-value=0.092  Score=38.02  Aligned_cols=38  Identities=24%  Similarity=0.356  Sum_probs=30.0

Q ss_pred             EEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHH
Q psy4713           7 ILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWA   48 (103)
Q Consensus         7 IiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA   48 (103)
                      ||.+||..||||-.++..+.+ +|   +.+++...-.++.|.
T Consensus         1 ii~itG~~gsGKst~~~~l~~-~g---~~~i~~D~~~~~~~~   38 (179)
T cd02022           1 IIGLTGGIGSGKSTVAKLLKE-LG---IPVIDADKIAHEVYE   38 (179)
T ss_pred             CEEEECCCCCCHHHHHHHHHH-CC---CCEEecCHHHHhhhh
Confidence            689999999999999999998 54   666766655555554

7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.

>TIGR00235 udk uridine kinase

Probab=94.84  E-value=0.062  Score=39.58  Aligned_cols=39  Identities=23%  Similarity=0.346  Sum_probs=31.8

Q ss_pred             CCeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecch
Q psy4713           3 QPKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSA   41 (103)
Q Consensus         3 ~pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~   41 (103)
                      ++-.||.|+|.+||||--+++.|...+....+.+++.-+
T Consensus         4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~~~~~~~i~~D~   42 (207)
T TIGR00235         4 PKGIIIGIGGGSGSGKTTVARKIYEQLGKLEIVIISQDN   42 (207)
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHHHHhcccCCeEecccc
Confidence            456788999999999999999999988754566666544

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2

Probab=94.77  E-value=0.041  Score=40.11  Aligned_cols=38  Identities=24%  Similarity=0.270  Sum_probs=30.0

Q ss_pred             EEEEecCcCCchhHHHHHHHHHhcccc------eEEEecchhhH
Q psy4713           7 ILLFSGKRKSGKDFLTDYLLERIGSQH------CAIIRLSAPIK   44 (103)
Q Consensus         7 IiL~sGKrksGKDy~a~~l~~~l~~~~------~~iv~iS~piK   44 (103)
                      ||-|+|-++|||-.+|+.|...|++..      +.++++-+..+
T Consensus         1 IIgI~G~sgSGKTTla~~L~~~L~~~~~~~~~~~~~~~~d~~~~   44 (194)
T PF00485_consen    1 IIGIAGPSGSGKTTLAKRLAQILNKRGIPAMEMDIILSLDDFYD   44 (194)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHTTCTTTCCCSEEEEEGGGGBH
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhCccCcCccceeEEEeeccccc
Confidence            789999999999999999999998632      44556554443

7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....

>PRK05541 adenylylsulfate kinase; Provisional

Probab=94.74  E-value=0.077  Score=37.73  Aligned_cols=31  Identities=26%  Similarity=0.389  Sum_probs=27.6

Q ss_pred             CCCCeEEEEEecCcCCchhHHHHHHHHHhcc
Q psy4713           1 MTQPKLILLFSGKRKSGKDFLTDYLLERIGS   31 (103)
Q Consensus         1 ~~~pklIiL~sGKrksGKDy~a~~l~~~l~~   31 (103)
                      |.++..+|+|+|-+||||--++..|...|..
T Consensus         3 ~~~~~~~I~i~G~~GsGKst~a~~l~~~l~~   33 (176)
T PRK05541          3 MKPNGYVIWITGLAGSGKTTIAKALYERLKL   33 (176)
T ss_pred             CCCCCCEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence            5667789999999999999999999999864

>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate

Probab=94.73  E-value=0.029  Score=38.60  Aligned_cols=24  Identities=38%  Similarity=0.566  Sum_probs=22.3

Q ss_pred             EEEEecCcCCchhHHHHHHHHHhc
Q psy4713           7 ILLFSGKRKSGKDFLTDYLLERIG   30 (103)
Q Consensus         7 IiL~sGKrksGKDy~a~~l~~~l~   30 (103)
                      ||+|+|-+||||-.++..|..+++
T Consensus         1 li~l~G~~GsGKST~a~~l~~~~~   24 (150)
T cd02021           1 IIVVMGVSGSGKSTVGKALAERLG   24 (150)
T ss_pred             CEEEEcCCCCCHHHHHHHHHhhcC
Confidence            689999999999999999999975

The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.

>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed

Probab=94.70  E-value=0.12  Score=41.00  Aligned_cols=66  Identities=21%  Similarity=0.332  Sum_probs=45.2

Q ss_pred             CCCeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHHHcCccHHHhcCCCCcHHHhHHHHHHH
Q psy4713           2 TQPKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQNGLEMDKLLGATKYKEKYRAEMITW   75 (103)
Q Consensus         2 ~~pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~~~glDl~~LL~d~~YKE~~R~~mi~w   75 (103)
                      .+|.-.|+++|-+||||.-++..|.+.+|   +.++.+-    ++.++..|.++.++...- -.+.||..-.++
T Consensus       130 ~~~~~~I~l~G~~GsGKStvg~~La~~Lg---~~~id~D----~~i~~~~G~~i~ei~~~~-G~~~fr~~e~~~  195 (309)
T PRK08154        130 AARRRRIALIGLRGAGKSTLGRMLAARLG---VPFVELN----REIEREAGLSVSEIFALY-GQEGYRRLERRA  195 (309)
T ss_pred             ccCCCEEEEECCCCCCHHHHHHHHHHHcC---CCEEeHH----HHHHHHhCCCHHHHHHHH-CHHHHHHHHHHH
Confidence            36778899999999999999999999986   4444443    455566788887764321 134455443333

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=94.67  E-value=0.057  Score=39.10  Aligned_cols=35  Identities=26%  Similarity=0.479  Sum_probs=30.6

Q ss_pred             EEEEecCcCCchhHHHHHHHHHhcccceEEEecch
Q psy4713           7 ILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSA   41 (103)
Q Consensus         7 IiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~   41 (103)
                      ||.|+|.+||||-.+++.|...++...+.+++.-+
T Consensus         1 iigi~G~~GsGKSTl~~~l~~~l~~~~~~v~~~D~   35 (198)
T cd02023           1 IIGIAGGSGSGKTTVAEEIIEQLGNPKVVIISQDS   35 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhCCCCeEEEEecc
Confidence            68999999999999999999998656778887765

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>PRK03731 aroL shikimate kinase II; Reviewed

Probab=94.66  E-value=0.12  Score=36.44  Aligned_cols=33  Identities=21%  Similarity=0.333  Sum_probs=25.4

Q ss_pred             EEEecCcCCchhHHHHHHHHHhcccceEEEecchhh
Q psy4713           8 LLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPI   43 (103)
Q Consensus         8 iL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~pi   43 (103)
                      |+|+|-+||||..++..|+++++   ...++.-..+
T Consensus         5 i~~~G~~GsGKst~~~~la~~lg---~~~~d~D~~~   37 (171)
T PRK03731          5 LFLVGARGCGKTTVGMALAQALG---YRFVDTDQWL   37 (171)
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC---CCEEEccHHH
Confidence            55689999999999999999986   3445544433

>TIGR03709 PPK2_rel_1 polyphosphate:nucleotide phosphotransferase, PPK2 family

Probab=94.60  E-value=0.061  Score=43.18  Aligned_cols=44  Identities=20%  Similarity=0.386  Sum_probs=40.7

Q ss_pred             CeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHH
Q psy4713           4 PKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHW   47 (103)
Q Consensus         4 pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~y   47 (103)
                      -.+||||.|=-+||||-+.+.|.+.+....++|.++..|+-+|=
T Consensus        55 ~~vlIv~eG~DaAGKG~~I~~l~~~lDPRg~~V~s~~~Pt~eE~   98 (264)
T TIGR03709        55 RSLLLVLQAMDAAGKDGTIRHVMSGVNPQGCQVTSFKAPSAEEL   98 (264)
T ss_pred             CcEEEEEECCCCCCchHHHHHHHHhcCCCeeEEEeCCCCCHHHH
Confidence            47999999999999999999999999999999999999998753

Members of this protein family belong to the polyphosphate kinase 2 (PPK2) family, which is not related in sequence to PPK1. While PPK1 tends to act in the biosynthesis of polyphosphate, or poly(P), members of the PPK2 family tend to use the terminal phosphate of poly(P) to regenerate ATP or GTP from the corresponding nucleoside diphosphate, or ADP from AMP as is the case with polyphosphate:AMP phosphotransferase (PAP). Members of this protein family most likely transfer the terminal phosphate between poly(P) and some nucleotide, but it is not clear which.

>smart00072 GuKc Guanylate kinase homologues

Probab=94.45  E-value=0.056  Score=39.21  Aligned_cols=25  Identities=28%  Similarity=0.353  Sum_probs=22.3

Q ss_pred             EEEEEecCcCCchhHHHHHHHHHhc
Q psy4713           6 LILLFSGKRKSGKDFLTDYLLERIG   30 (103)
Q Consensus         6 lIiL~sGKrksGKDy~a~~l~~~l~   30 (103)
                      .+|+++|.+||||+.+++.|.+.+.
T Consensus         3 r~ivl~Gpsg~GK~tl~~~L~~~~~   27 (184)
T smart00072        3 RPIVLSGPSGVGKGTLLAELIQEIP   27 (184)
T ss_pred             cEEEEECCCCCCHHHHHHHHHhcCC
Confidence            4688999999999999999998863

Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.

>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family

Probab=94.43  E-value=0.18  Score=37.18  Aligned_cols=57  Identities=14%  Similarity=0.242  Sum_probs=40.3

Q ss_pred             CeEEEEEecCcCCchhHHHHHHHHH-hcc-cceEEEecchhhHH--HHHHHcCccHHHhcC
Q psy4713           4 PKLILLFSGKRKSGKDFLTDYLLER-IGS-QHCAIIRLSAPIKS--HWAKQNGLEMDKLLG   60 (103)
Q Consensus         4 pklIiL~sGKrksGKDy~a~~l~~~-l~~-~~~~iv~iS~piK~--~yA~~~glDl~~LL~   60 (103)
                      +--+++|.|.+||||-.++..+... +.+ ..+..++.-.+..+  +.|+..|.|+++++.
T Consensus        19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~e~~~~~i~~~~~~~g~~~~~~~~   79 (229)
T TIGR03881        19 RGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTTEESRESIIRQAAQFGMDFEKAIE   79 (229)
T ss_pred             CCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEccCCHHHHHHHHHHhCCCHHHHhh
Confidence            4458899999999999888765533 222 46667776555543  247789999998754

Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.

>PRK06547 hypothetical protein; Provisional

Probab=94.33  E-value=0.063  Score=39.62  Aligned_cols=35  Identities=29%  Similarity=0.470  Sum_probs=28.5

Q ss_pred             CCeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecc
Q psy4713           3 QPKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLS   40 (103)
Q Consensus         3 ~pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS   40 (103)
                      .+..+|+|+|.+||||=.+++.|++.++   +.++++-
T Consensus        13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~~---~~~~~~d   47 (172)
T PRK06547         13 GGMITVLIDGRSGSGKTTLAGALAARTG---FQLVHLD   47 (172)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhC---CCeeccc
Confidence            5678999999999999999999999875   4444443

>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed

Probab=94.32  E-value=0.091  Score=39.46  Aligned_cols=39  Identities=23%  Similarity=0.357  Sum_probs=31.3

Q ss_pred             CCeEEEEEecCcCCchhHHHHHHHHHhccc--ceEE-Eecch
Q psy4713           3 QPKLILLFSGKRKSGKDFLTDYLLERIGSQ--HCAI-IRLSA   41 (103)
Q Consensus         3 ~pklIiL~sGKrksGKDy~a~~l~~~l~~~--~~~i-v~iS~   41 (103)
                      .+..||.|+|.+||||--+++.|...+...  .+.| +++-+
T Consensus        31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D~   72 (229)
T PRK09270         31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPMDG   72 (229)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhhhccCCceEEEeccc
Confidence            467899999999999999999999999763  3344 65544

>PRK13947 shikimate kinase; Provisional

Probab=94.31  E-value=0.082  Score=37.01  Aligned_cols=24  Identities=13%  Similarity=0.203  Sum_probs=22.3

Q ss_pred             EEEecCcCCchhHHHHHHHHHhcc
Q psy4713           8 LLFSGKRKSGKDFLTDYLLERIGS   31 (103)
Q Consensus         8 iL~sGKrksGKDy~a~~l~~~l~~   31 (103)
                      |+++|-+||||-.++..|+++|+-
T Consensus         4 I~l~G~~GsGKst~a~~La~~lg~   27 (171)
T PRK13947          4 IVLIGFMGTGKTTVGKRVATTLSF   27 (171)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHhCC
Confidence            788999999999999999999963

>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A

Probab=94.22  E-value=0.06  Score=37.25  Aligned_cols=29  Identities=34%  Similarity=0.491  Sum_probs=21.0

Q ss_pred             CeEEEEEecCcCCchhHHHHHHHHHhccc
Q psy4713           4 PKLILLFSGKRKSGKDFLTDYLLERIGSQ   32 (103)
Q Consensus         4 pklIiL~sGKrksGKDy~a~~l~~~l~~~   32 (103)
                      ..-+++|+|.+|+||=.+...+..++...
T Consensus        23 ~~~~~ll~G~~G~GKT~ll~~~~~~~~~~   51 (185)
T PF13191_consen   23 SPRNLLLTGESGSGKTSLLRALLDRLAER   51 (185)
T ss_dssp             ----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence            45689999999999999999999988764

>PF13173 AAA_14: AAA domain

Probab=94.21  E-value=0.13  Score=35.15  Aligned_cols=43  Identities=23%  Similarity=0.353  Sum_probs=33.1

Q ss_pred             EEEEEecCcCCchhHHHHHHHHHhc-ccceEEEecchhhHHHHH
Q psy4713           6 LILLFSGKRKSGKDFLTDYLLERIG-SQHCAIIRLSAPIKSHWA   48 (103)
Q Consensus         6 lIiL~sGKrksGKDy~a~~l~~~l~-~~~~~iv~iS~piK~~yA   48 (103)
                      -|++++|.|++||=+++..+.+.+. ..++..+.+.++--...+
T Consensus         3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~   46 (128)
T PF13173_consen    3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLA   46 (128)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHh
Confidence            4789999999999999999888775 355666777777664433

>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=94.15  E-value=0.088  Score=39.17  Aligned_cols=35  Identities=23%  Similarity=0.311  Sum_probs=27.8

Q ss_pred             eEEEEEecCcCCchhHHHHHHHHHhcccceEEEec
Q psy4713           5 KLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRL   39 (103)
Q Consensus         5 klIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~i   39 (103)
                      ..||.|||-+||||-=+|..|..+|.+....++-|
T Consensus         2 g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~L   36 (156)
T PF01583_consen    2 GFVIWLTGLSGSGKTTLARALERRLFARGIKVYLL   36 (156)
T ss_dssp             -EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEE
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEe
Confidence            47899999999999999999999997744444443

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....

>PRK04220 2-phosphoglycerate kinase; Provisional

Probab=93.95  E-value=0.17  Score=41.45  Aligned_cols=49  Identities=22%  Similarity=0.349  Sum_probs=36.8

Q ss_pred             CeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHHHcCccH
Q psy4713           4 PKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQNGLEM   55 (103)
Q Consensus         4 pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~~~glDl   55 (103)
                      ..+||+|+|-+||||--+|..|+.+|+-.  .|++ .|.+.+..-....-|+
T Consensus        91 ~p~iIlI~G~sgsGKStlA~~La~~l~~~--~vi~-~D~~re~~R~~~~~e~  139 (301)
T PRK04220         91 EPIIILIGGASGVGTSTIAFELASRLGIR--SVIG-TDSIREVMRKIISKEL  139 (301)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHhCCC--EEEe-chHHHHHHHHhcchhh
Confidence            44889999999999999999999999632  4666 7777755544333333

>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+)

Probab=93.86  E-value=0.071  Score=40.26  Aligned_cols=33  Identities=30%  Similarity=0.467  Sum_probs=28.0

Q ss_pred             EEEEecCcCCchhHHHHHHHHHhcccceEEEecch
Q psy4713           7 ILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSA   41 (103)
Q Consensus         7 IiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~   41 (103)
                      ||.|+|-+||||-.+|..|++.++  .+.++++.+
T Consensus         1 ii~i~G~sgsGKTtla~~l~~~~~--~~~~i~~Dd   33 (187)
T cd02024           1 IVGISGVTNSGKTTLAKLLQRILP--NCCVIHQDD   33 (187)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHcC--CCeEEcccc
Confidence            688999999999999999999985  466776664

This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=93.85  E-value=0.085  Score=33.02  Aligned_cols=43  Identities=21%  Similarity=0.237  Sum_probs=32.8

Q ss_pred             eEEEEEecCcCCchhHHHHHHHHHhccc--ceEEEecchhhHHHH
Q psy4713           5 KLILLFSGKRKSGKDFLTDYLLERIGSQ--HCAIIRLSAPIKSHW   47 (103)
Q Consensus         5 klIiL~sGKrksGKDy~a~~l~~~l~~~--~~~iv~iS~piK~~y   47 (103)
                      .-.++|.|..||||-.++..+...+...  .+..+..+...-...
T Consensus         2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~   46 (148)
T smart00382        2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVL   46 (148)
T ss_pred             CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCH
Confidence            3478999999999999999999999875  366666555444333

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>PRK00279 adk adenylate kinase; Reviewed

Probab=93.82  E-value=0.1  Score=38.59  Aligned_cols=53  Identities=19%  Similarity=0.274  Sum_probs=39.1

Q ss_pred             EEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHHH--cCccHHHhcCCC
Q psy4713           7 ILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQ--NGLEMDKLLGAT   62 (103)
Q Consensus         7 IiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~~--~glDl~~LL~d~   62 (103)
                      .|+|+|..||||.=++..|++.++   +..++..+-++++-...  +|-.+..++..+
T Consensus         2 ~I~v~G~pGsGKsT~a~~la~~~~---~~~is~~dl~r~~~~~~~~~~~~~~~~~~~g   56 (215)
T PRK00279          2 RLILLGPPGAGKGTQAKFIAEKYG---IPHISTGDMLRAAVKAGTELGKEAKSYMDAG   56 (215)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC---CcEEECCccHHHHHhccchHHHHHHHHHHcC
Confidence            488999999999999999999975   78888888888765542  233344444443

>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway

Probab=93.81  E-value=0.1  Score=39.70  Aligned_cols=36  Identities=17%  Similarity=0.192  Sum_probs=30.3

Q ss_pred             EEEEecCcCCchhHHHHHHHHHhc----ccceEEEecchh
Q psy4713           7 ILLFSGKRKSGKDFLTDYLLERIG----SQHCAIIRLSAP   42 (103)
Q Consensus         7 IiL~sGKrksGKDy~a~~l~~~l~----~~~~~iv~iS~p   42 (103)
                      ||-|+|-+||||--+++.|...+.    ...+.+|++.+=
T Consensus         1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f   40 (220)
T cd02025           1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGF   40 (220)
T ss_pred             CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCcc
Confidence            678999999999999999999994    356778877654

The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=93.66  E-value=0.15  Score=31.89  Aligned_cols=29  Identities=28%  Similarity=0.489  Sum_probs=23.8

Q ss_pred             EEEEecCcCCchhHHHHHHHHHhcccceE
Q psy4713           7 ILLFSGKRKSGKDFLTDYLLERIGSQHCA   35 (103)
Q Consensus         7 IiL~sGKrksGKDy~a~~l~~~l~~~~~~   35 (103)
                      +|.++|-++|||.=+++.|.++|....+.
T Consensus         1 ~i~i~G~~gsGKst~~~~l~~~l~~~~~~   29 (69)
T cd02019           1 IIAITGGSGSGKSTVAKKLAEQLGGRSVV   29 (69)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhcCCCEE
Confidence            57889999999999999999998333333

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>PRK14528 adenylate kinase; Provisional

Probab=93.62  E-value=0.14  Score=37.54  Aligned_cols=54  Identities=22%  Similarity=0.356  Sum_probs=39.4

Q ss_pred             EEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHHHc--CccHHHhcCCCC
Q psy4713           7 ILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQN--GLEMDKLLGATK   63 (103)
Q Consensus         7 IiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~~~--glDl~~LL~d~~   63 (103)
                      .|+|+|..||||.-++..|.+.++   +..++..+-+..+....+  |..+.+++..+.
T Consensus         3 ~i~i~G~pGsGKtt~a~~la~~~~---~~~is~~~~lr~~~~~~~~~g~~~~~~~~~g~   58 (186)
T PRK14528          3 NIIFMGPPGAGKGTQAKILCERLS---IPQISTGDILREAVKNQTAMGIEAKRYMDAGD   58 (186)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC---CCeeeCCHHHHHHhhcCCHHHHHHHHHHhCCC
Confidence            377899999999999999999875   677888888877665432  333445555444

>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional

Probab=93.57  E-value=0.1  Score=44.88  Aligned_cols=37  Identities=30%  Similarity=0.456  Sum_probs=32.1

Q ss_pred             CCeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchh
Q psy4713           3 QPKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAP   42 (103)
Q Consensus         3 ~pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~p   42 (103)
                      +|.+|+++.|..||||=++|+.+.+.++   +..|.+|+|
T Consensus       146 k~PlgllL~GPPGcGKTllAraiA~elg---~~~i~vsa~  182 (413)
T PLN00020        146 KVPLILGIWGGKGQGKSFQCELVFKKMG---IEPIVMSAG  182 (413)
T ss_pred             CCCeEEEeeCCCCCCHHHHHHHHHHHcC---CCeEEEEHH
Confidence            6889999999999999999999999986   456666665

>PLN02459 probable adenylate kinase

Probab=93.55  E-value=0.18  Score=40.38  Aligned_cols=55  Identities=16%  Similarity=0.251  Sum_probs=42.1

Q ss_pred             EEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHHH--cCccHHHhcCCCC
Q psy4713           6 LILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQ--NGLEMDKLLGATK   63 (103)
Q Consensus         6 lIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~~--~glDl~~LL~d~~   63 (103)
                      +.|+|.|..||||.-.+..|++.++   ...++..+-++++.+..  .|.-+++.+..|.
T Consensus        30 ~~ii~~G~PGsGK~T~a~~la~~~~---~~~is~gdllR~ei~~~t~lg~~i~~~~~~G~   86 (261)
T PLN02459         30 VNWVFLGCPGVGKGTYASRLSKLLG---VPHIATGDLVREEIKSSGPLGAQLKEIVNQGK   86 (261)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhC---CcEEeCcHHHHHHHhccchhHHHHHHHHHcCC
Confidence            5577789999999999999999974   77788888888887653  3445555665554

>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]

Probab=93.54  E-value=0.1  Score=40.68  Aligned_cols=37  Identities=30%  Similarity=0.348  Sum_probs=29.0

Q ss_pred             CeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhH
Q psy4713           4 PKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIK   44 (103)
Q Consensus         4 pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK   44 (103)
                      .-.++++||+||+||+=+...|.+..    ---+|||..|+
T Consensus         3 ~G~l~vlsgPSG~GKsTl~k~L~~~~----~l~~SVS~TTR   39 (191)
T COG0194           3 KGLLIVLSGPSGVGKSTLVKALLEDD----KLRFSVSATTR   39 (191)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhhc----CeEEEEEeccC
Confidence            45688899999999999999998886    33456676554

>PRK08903 DnaA regulatory inactivator Hda; Validated

Probab=93.51  E-value=0.12  Score=38.15  Aligned_cols=38  Identities=16%  Similarity=0.314  Sum_probs=28.4

Q ss_pred             eEEEEEecCcCCchhHHHHHHHHHhcc--cceEEEecchh
Q psy4713           5 KLILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIRLSAP   42 (103)
Q Consensus         5 klIiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~iS~p   42 (103)
                      .-.++|+|++|+||-+++..|......  ..+..+..+..
T Consensus        42 ~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~   81 (227)
T PRK08903         42 DRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASP   81 (227)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHh
Confidence            346889999999999999999987633  34555555443

>TIGR02012 tigrfam_recA protein RecA

Probab=93.47  E-value=0.21  Score=40.94  Aligned_cols=65  Identities=22%  Similarity=0.270  Sum_probs=49.3

Q ss_pred             CeEEEEEecCcCCchhHHHHHHHHHhcc--cceEEEecchhhHHHHHHHcCccHHHhcCCCC-cHHHh
Q psy4713           4 PKLILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIRLSAPIKSHWAKQNGLEMDKLLGATK-YKEKY   68 (103)
Q Consensus         4 pklIiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~iS~piK~~yA~~~glDl~~LL~d~~-YKE~~   68 (103)
                      +--|++|.|..+|||=-++-.+......  ..|..|..-++.-.+||+..|+|+++|+-..+ .-|+.
T Consensus        54 ~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~  121 (321)
T TIGR02012        54 RGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQA  121 (321)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHH
Confidence            4468999999999998887665544432  56777777777778899999999999987654 34444

This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.

>PRK09354 recA recombinase A; Provisional

Probab=93.45  E-value=0.21  Score=41.60  Aligned_cols=65  Identities=23%  Similarity=0.267  Sum_probs=49.8

Q ss_pred             CeEEEEEecCcCCchhHHHHHHHHHhcc--cceEEEecchhhHHHHHHHcCccHHHhcCCCC-cHHHh
Q psy4713           4 PKLILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIRLSAPIKSHWAKQNGLEMDKLLGATK-YKEKY   68 (103)
Q Consensus         4 pklIiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~iS~piK~~yA~~~glDl~~LL~d~~-YKE~~   68 (103)
                      +--|++|.|..+|||=-++-.+......  ..|.-|..-++.-..||+..|+|+++|+-..+ .-|+.
T Consensus        59 ~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~~~a~~lGvdld~lli~qp~~~Eq~  126 (349)
T PRK09354         59 RGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQA  126 (349)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHHHHHHHcCCCHHHeEEecCCCHHHH
Confidence            3458999999999998877765543322  56777888888888999999999999987654 44544

>PTZ00088 adenylate kinase 1; Provisional

Probab=93.44  E-value=0.13  Score=39.74  Aligned_cols=40  Identities=13%  Similarity=0.208  Sum_probs=34.7

Q ss_pred             EEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHH
Q psy4713           7 ILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAK   49 (103)
Q Consensus         7 IiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~   49 (103)
                      -|+|.|..||||.-++..|++.++   +..+++.+-+.++-+.
T Consensus         8 rIvl~G~PGsGK~T~a~~La~~~g---~~~is~gdllr~~~~~   47 (229)
T PTZ00088          8 KIVLFGAPGVGKGTFAEILSKKEN---LKHINMGNILREEIKA   47 (229)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhC---CcEEECChHHHHHhhc
Confidence            378899999999999999999974   8889999999877654

>PRK14532 adenylate kinase; Provisional

Probab=93.41  E-value=0.19  Score=35.94  Aligned_cols=38  Identities=21%  Similarity=0.299  Sum_probs=33.1

Q ss_pred             EEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHH
Q psy4713           8 LLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWA   48 (103)
Q Consensus         8 iL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA   48 (103)
                      |+|.|..||||.-++..|++.++   +..++..+-++++.+
T Consensus         3 i~~~G~pGsGKsT~a~~la~~~g---~~~is~~d~lr~~~~   40 (188)
T PRK14532          3 LILFGPPAAGKGTQAKRLVEERG---MVQLSTGDMLRAAIA   40 (188)
T ss_pred             EEEECCCCCCHHHHHHHHHHHcC---CeEEeCcHHHHHHHH
Confidence            67899999999999999999875   777888888888754

>PRK05439 pantothenate kinase; Provisional

Probab=93.39  E-value=0.16  Score=41.51  Aligned_cols=41  Identities=12%  Similarity=0.174  Sum_probs=34.4

Q ss_pred             CCCeEEEEEecCcCCchhHHHHHHHHHhcc----cceEEEecchh
Q psy4713           2 TQPKLILLFSGKRKSGKDFLTDYLLERIGS----QHCAIIRLSAP   42 (103)
Q Consensus         2 ~~pklIiL~sGKrksGKDy~a~~l~~~l~~----~~~~iv~iS~p   42 (103)
                      +...+||.|+|-.||||--+|+.|+..++.    ..+.+|++-+=
T Consensus        83 ~~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdF  127 (311)
T PRK05439         83 QKVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGF  127 (311)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEecccc
Confidence            356789999999999999999999998864    36788887763

>PLN02348 phosphoribulokinase

Probab=93.36  E-value=0.16  Score=43.11  Aligned_cols=29  Identities=14%  Similarity=0.253  Sum_probs=26.5

Q ss_pred             CCeEEEEEecCcCCchhHHHHHHHHHhcc
Q psy4713           3 QPKLILLFSGKRKSGKDFLTDYLLERIGS   31 (103)
Q Consensus         3 ~pklIiL~sGKrksGKDy~a~~l~~~l~~   31 (103)
                      +.++||-|+|-+||||--++..|.+.|+.
T Consensus        47 ~~p~IIGIaG~SGSGKSTfA~~L~~~Lg~   75 (395)
T PLN02348         47 DGTVVIGLAADSGCGKSTFMRRLTSVFGG   75 (395)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            45789999999999999999999999974

>PRK02496 adk adenylate kinase; Provisional

Probab=93.33  E-value=0.17  Score=36.18  Aligned_cols=39  Identities=21%  Similarity=0.248  Sum_probs=33.0

Q ss_pred             EEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHH
Q psy4713           8 LLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAK   49 (103)
Q Consensus         8 iL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~   49 (103)
                      |+|+|..||||.=++..|++.++   +..++..+-+.+++..
T Consensus         4 i~i~G~pGsGKst~a~~la~~~~---~~~i~~~~~~~~~~~~   42 (184)
T PRK02496          4 LIFLGPPGAGKGTQAVVLAEHLH---IPHISTGDILRQAIKE   42 (184)
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC---CcEEEhHHHHHHHHhc
Confidence            77899999999999999999974   6778888888877644

>PLN02422 dephospho-CoA kinase

Probab=93.28  E-value=0.76  Score=36.02  Aligned_cols=39  Identities=13%  Similarity=0.208  Sum_probs=33.1

Q ss_pred             EEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHH
Q psy4713           7 ILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAK   49 (103)
Q Consensus         7 IiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~   49 (103)
                      +|.+||.-||||-.+++.|.+ +   .+.+++--.-.++.|++
T Consensus         3 ~igltG~igsGKstv~~~l~~-~---g~~~idaD~~~~~l~~~   41 (232)
T PLN02422          3 VVGLTGGIASGKSTVSNLFKS-S---GIPVVDADKVARDVLKK   41 (232)
T ss_pred             EEEEECCCCCCHHHHHHHHHH-C---CCeEEehhHHHHHHHHh
Confidence            789999999999999999984 4   47788888878888876

>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response

Probab=93.12  E-value=0.31  Score=40.15  Aligned_cols=65  Identities=23%  Similarity=0.262  Sum_probs=50.4

Q ss_pred             CeEEEEEecCcCCchhHHHHHHHHHhcc--cceEEEecchhhHHHHHHHcCccHHHhcCCCCc-HHHh
Q psy4713           4 PKLILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIRLSAPIKSHWAKQNGLEMDKLLGATKY-KEKY   68 (103)
Q Consensus         4 pklIiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~iS~piK~~yA~~~glDl~~LL~d~~Y-KE~~   68 (103)
                      +--|++|.|..+|||=-++-.+......  ..|..|..-++.-.+||+..|.|+++|+-..++ -|+.
T Consensus        54 ~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~  121 (325)
T cd00983          54 KGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQA  121 (325)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHHHHHHcCCCHHHheecCCCCHHHH
Confidence            3458899999999998877776544322  567788888888889999999999999977654 3443

RecA couples ATP hydrolysis to DNA strand exchange.

>PRK00023 cmk cytidylate kinase; Provisional

Probab=93.03  E-value=0.14  Score=38.95  Aligned_cols=52  Identities=19%  Similarity=0.363  Sum_probs=35.6

Q ss_pred             CCCCeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhh--HHHHHHHcCccHH
Q psy4713           1 MTQPKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPI--KSHWAKQNGLEMD   56 (103)
Q Consensus         1 ~~~pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~pi--K~~yA~~~glDl~   56 (103)
                      |+. +.||.|+|..||||--++..+++.++-   ..+.-..-.  =...|...|+|++
T Consensus         1 ~~~-~~~i~i~g~~gsGksti~~~la~~~~~---~~~~~~~~~r~~~~~~~~~g~~~~   54 (225)
T PRK00023          1 MMK-AIVIAIDGPAGSGKGTVAKILAKKLGF---HYLDTGAMYRAVALAALRHGVDLE   54 (225)
T ss_pred             CCC-ceEEEEECCCCCCHHHHHHHHHHHhCC---CcccCchhHHHHHHHHHHcCCCCC
Confidence            455 589999999999999999999999862   222211111  1235567787654

>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional

Probab=93.03  E-value=0.11  Score=41.47  Aligned_cols=24  Identities=25%  Similarity=0.386  Sum_probs=20.9

Q ss_pred             EEEEecCcCCchhHHHHHHHHHhc
Q psy4713           7 ILLFSGKRKSGKDFLTDYLLERIG   30 (103)
Q Consensus         7 IiL~sGKrksGKDy~a~~l~~~l~   30 (103)
                      =|||+|++|+||.++|..++..-.
T Consensus        31 pVlI~GE~GtGK~~lA~~iH~~s~   54 (326)
T PRK11608         31 PVLIIGERGTGKELIASRLHYLSS   54 (326)
T ss_pred             CEEEECCCCCcHHHHHHHHHHhCC
Confidence            478999999999999999986544

>PRK14737 gmk guanylate kinase; Provisional

Probab=92.99  E-value=0.12  Score=38.43  Aligned_cols=26  Identities=23%  Similarity=0.318  Sum_probs=23.0

Q ss_pred             CeEEEEEecCcCCchhHHHHHHHHHh
Q psy4713           4 PKLILLFSGKRKSGKDFLTDYLLERI   29 (103)
Q Consensus         4 pklIiL~sGKrksGKDy~a~~l~~~l   29 (103)
                      +..+|+|+|.+||||+=+++.|.+.+
T Consensus         3 ~~~~ivl~GpsG~GK~tl~~~l~~~~   28 (186)
T PRK14737          3 SPKLFIISSVAGGGKSTIIQALLEEH   28 (186)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence            45678899999999999999998876

>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2

Probab=92.76  E-value=0.23  Score=37.07  Aligned_cols=36  Identities=25%  Similarity=0.398  Sum_probs=27.5

Q ss_pred             EEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHH
Q psy4713           6 LILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKS   45 (103)
Q Consensus         6 lIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~   45 (103)
                      +||-+||.-||||-+++..|.+ +|   +.|+..-.-.++
T Consensus         1 ~iIglTG~igsGKStv~~~l~~-~G---~~vidaD~i~~~   36 (180)
T PF01121_consen    1 MIIGLTGGIGSGKSTVSKILAE-LG---FPVIDADEIAHE   36 (180)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH-TT----EEEEHHHHHHH
T ss_pred             CEEEEECCCcCCHHHHHHHHHH-CC---CCEECccHHHHH
Confidence            5899999999999999999998 54   666655444333

7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.

>TIGR00152 dephospho-CoA kinase

Probab=92.61  E-value=0.89  Score=32.86  Aligned_cols=40  Identities=25%  Similarity=0.379  Sum_probs=31.1

Q ss_pred             EEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHH
Q psy4713           7 ILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAK   49 (103)
Q Consensus         7 IiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~   49 (103)
                      ||.|||.-||||-.+++.|.+..   .+.++..-.-.++.|..
T Consensus         1 ~i~itG~~gsGKst~~~~l~~~~---~~~~i~~D~~~~~~~~~   40 (188)
T TIGR00152         1 IIGLTGGIGSGKSTVANYLADKY---HFPVIDADKIAHQVVEK   40 (188)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhc---CCeEEeCCHHHHHHHhc
Confidence            58999999999999999999875   35667666555555544

This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=92.59  E-value=0.16  Score=35.66  Aligned_cols=38  Identities=18%  Similarity=0.344  Sum_probs=29.7

Q ss_pred             EEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHH
Q psy4713           6 LILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSH   46 (103)
Q Consensus         6 lIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~   46 (103)
                      -||+|.|.+||||--++..|.+.+|   ...++.++-+.++
T Consensus         4 ~ii~i~G~~GsGKsTl~~~l~~~~g---~~~~~~g~~~~~~   41 (188)
T TIGR01360         4 KIIFIVGGPGSGKGTQCEKIVEKYG---FTHLSTGDLLRAE   41 (188)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhC---CcEEeHHHHHHHH
Confidence            3788899999999999999999885   4455665555554

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>PLN02674 adenylate kinase

Probab=92.53  E-value=0.27  Score=38.81  Aligned_cols=58  Identities=14%  Similarity=0.210  Sum_probs=45.5

Q ss_pred             CeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHHH--cCccHHHhcCCCCc
Q psy4713           4 PKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQ--NGLEMDKLLGATKY   64 (103)
Q Consensus         4 pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~~--~glDl~~LL~d~~Y   64 (103)
                      +...|+|.|..||||.-.+..|++.++   +.-|+..+=++++-+..  .|..+.+++..|..
T Consensus        30 ~~~~i~l~G~PGsGKgT~a~~La~~~~---~~his~GdllR~~i~~~s~~g~~i~~~~~~G~l   89 (244)
T PLN02674         30 PDKRLILIGPPGSGKGTQSPIIKDEYC---LCHLATGDMLRAAVAAKTPLGIKAKEAMDKGEL   89 (244)
T ss_pred             cCceEEEECCCCCCHHHHHHHHHHHcC---CcEEchhHHHHHHHhccChhhHHHHHHHHcCCc
Confidence            345678899999999999999999975   77788888888876553  46667777777665

>PRK09302 circadian clock protein KaiC; Reviewed

Probab=92.51  E-value=0.42  Score=40.13  Aligned_cols=57  Identities=21%  Similarity=0.378  Sum_probs=42.8

Q ss_pred             eEEEEEecCcCCchhHHHHHHHHHh-cc-cceEEEecchhhHHH--HHHHcCccHHHhcCC
Q psy4713           5 KLILLFSGKRKSGKDFLTDYLLERI-GS-QHCAIIRLSAPIKSH--WAKQNGLEMDKLLGA   61 (103)
Q Consensus         5 klIiL~sGKrksGKDy~a~~l~~~l-~~-~~~~iv~iS~piK~~--yA~~~glDl~~LL~d   61 (103)
                      --+++|+|..|+||-.++..+.... .. .+|..+++.++..+.  .+...|.|+++++.+
T Consensus       273 g~~~li~G~~G~GKT~l~~~~~~~~~~~g~~~~yis~e~~~~~i~~~~~~~g~~~~~~~~~  333 (509)
T PRK09302        273 GSIILVSGATGTGKTLLASKFAEAACRRGERCLLFAFEESRAQLIRNARSWGIDLEKMEEK  333 (509)
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHcCCChHHHhhc
Confidence            3578889999999999887776543 22 688888888775543  556789999987544

>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=92.51  E-value=0.18  Score=44.25  Aligned_cols=58  Identities=22%  Similarity=0.385  Sum_probs=43.4

Q ss_pred             CCCeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHH--------HHHcCccHHHhc
Q psy4713           2 TQPKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHW--------AKQNGLEMDKLL   59 (103)
Q Consensus         2 ~~pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~y--------A~~~glDl~~LL   59 (103)
                      ..|.=+|||||..||||--.--...+.+......|+.+.||+--..        -+..|+++++.|
T Consensus       255 ~~p~GliLvTGPTGSGKTTTLY~~L~~ln~~~~nI~TiEDPVE~~~~gI~Q~qVN~k~gltfa~~L  320 (500)
T COG2804         255 NRPQGLILVTGPTGSGKTTTLYAALSELNTPERNIITIEDPVEYQLPGINQVQVNPKIGLTFARAL  320 (500)
T ss_pred             hCCCeEEEEeCCCCCCHHHHHHHHHHHhcCCCceEEEeeCCeeeecCCcceeecccccCCCHHHHH
Confidence            5688899999999999987666666666666666999999984322        245677777765

>PRK08116 hypothetical protein; Validated

Probab=92.50  E-value=0.31  Score=38.21  Aligned_cols=37  Identities=16%  Similarity=0.301  Sum_probs=28.4

Q ss_pred             eEEEEEecCcCCchhHHHHHHHHHhcc--cceEEEecch
Q psy4713           5 KLILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIRLSA   41 (103)
Q Consensus         5 klIiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~iS~   41 (103)
                      ..-++|.|..|+||=+++..+...+.+  ..+..++.++
T Consensus       114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~  152 (268)
T PRK08116        114 NVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQ  152 (268)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHH
Confidence            346899999999999999999998865  3444455444

>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor

Probab=92.43  E-value=0.19  Score=35.03  Aligned_cols=37  Identities=24%  Similarity=0.518  Sum_probs=27.9

Q ss_pred             EEEEEecCcCCchhHHHHHHHHHhcccceEEEecchh
Q psy4713           6 LILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAP   42 (103)
Q Consensus         6 lIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~p   42 (103)
                      .+|+|.|-.||||--+++.|++.+......++.++.|
T Consensus         1 ~~I~ieG~~GsGKtT~~~~L~~~l~~~g~~v~~~~~~   37 (200)
T cd01672           1 MFIVFEGIDGAGKTTLIELLAERLEARGYEVVLTREP   37 (200)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCC
Confidence            3789999999999999999999996533333444433

TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2

Probab=92.41  E-value=0.14  Score=35.95  Aligned_cols=25  Identities=32%  Similarity=0.511  Sum_probs=21.6

Q ss_pred             EEEEecCcCCchhHHHHHHHHHhcc
Q psy4713           7 ILLFSGKRKSGKDFLTDYLLERIGS   31 (103)
Q Consensus         7 IiL~sGKrksGKDy~a~~l~~~l~~   31 (103)
                      +|+|.|.+||||+=+++.|...+..
T Consensus         1 ~i~i~GpsGsGKstl~~~L~~~~~~   25 (137)
T cd00071           1 LIVLSGPSGVGKSTLLKRLLEEFDP   25 (137)
T ss_pred             CEEEECCCCCCHHHHHHHHHhcCCc
Confidence            4678999999999999999988653

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.

>cd01120 RecA-like_NTPases RecA-like NTPases

Probab=92.39  E-value=0.2  Score=33.19  Aligned_cols=41  Identities=22%  Similarity=0.253  Sum_probs=30.4

Q ss_pred             EEEEecCcCCchhHHHHHHHHHhcc--cceEEEecchhhHHHH
Q psy4713           7 ILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIRLSAPIKSHW   47 (103)
Q Consensus         7 IiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~iS~piK~~y   47 (103)
                      +++|+|++|+||=.++..+...+..  ..+..++.....-...
T Consensus         1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~   43 (165)
T cd01120           1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELT   43 (165)
T ss_pred             CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHH
Confidence            5799999999999999988887754  4555666655554443

This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.

>PRK12377 putative replication protein; Provisional

Probab=92.39  E-value=0.24  Score=38.97  Aligned_cols=38  Identities=21%  Similarity=0.406  Sum_probs=30.4

Q ss_pred             EEEEecCcCCchhHHHHHHHHHhcc--cceEEEecchhhH
Q psy4713           7 ILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIRLSAPIK   44 (103)
Q Consensus         7 IiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~iS~piK   44 (103)
                      -++|+|..|+||-+++..+...+..  ..+..++.++.+.
T Consensus       103 ~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~  142 (248)
T PRK12377        103 NFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMS  142 (248)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHH
Confidence            4789999999999999999999865  4566667666443

>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]

Probab=92.32  E-value=0.61  Score=35.47  Aligned_cols=59  Identities=12%  Similarity=0.181  Sum_probs=42.5

Q ss_pred             CeEEEEEecCcCCchhHHHHHHHHHhcc--cceEEEecchhhHH--HHHHHcCccHHHhcCCC
Q psy4713           4 PKLILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIRLSAPIKS--HWAKQNGLEMDKLLGAT   62 (103)
Q Consensus         4 pklIiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~iS~piK~--~yA~~~glDl~~LL~d~   62 (103)
                      +.-++||+|..||||--.+-......-+  ..|-.|+++++-..  +.+..+|.|++.+..++
T Consensus        22 ~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e~~~~l~~~~~~~g~d~~~~~~~g   84 (260)
T COG0467          22 RGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEESPEELLENARSFGWDLEVYIEKG   84 (260)
T ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecCCHHHHHHHHHHcCCCHHHHhhcC
Confidence            4568999999999999877766655443  56888888765432  34445999999776554

>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family

Probab=92.32  E-value=0.65  Score=35.09  Aligned_cols=58  Identities=16%  Similarity=0.212  Sum_probs=42.1

Q ss_pred             CeEEEEEecCcCCchhHHHHHH-HHHhcc-cceEEEecchhhHH--HHHHHcCccHHHhcCC
Q psy4713           4 PKLILLFSGKRKSGKDFLTDYL-LERIGS-QHCAIIRLSAPIKS--HWAKQNGLEMDKLLGA   61 (103)
Q Consensus         4 pklIiL~sGKrksGKDy~a~~l-~~~l~~-~~~~iv~iS~piK~--~yA~~~glDl~~LL~d   61 (103)
                      |--++||+|.+||||--++..+ ...+.. ..|..|++.++..+  +.+++.|.|++++..+
T Consensus        20 ~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee~~~~i~~~~~~~g~~~~~~~~~   81 (237)
T TIGR03877        20 ERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEEHPVQVRRNMAQFGWDVRKYEEE   81 (237)
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeCCHHHHHHHHHHhCCCHHHHhhc
Confidence            4568999999999999877654 344432 68888998886654  2355789999877533

Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.

>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF

Probab=92.30  E-value=0.16  Score=40.94  Aligned_cols=24  Identities=25%  Similarity=0.354  Sum_probs=21.3

Q ss_pred             EEEEecCcCCchhHHHHHHHHHhc
Q psy4713           7 ILLFSGKRKSGKDFLTDYLLERIG   30 (103)
Q Consensus         7 IiL~sGKrksGKDy~a~~l~~~l~   30 (103)
                      =|||+|++|+||.++|..++..-.
T Consensus        24 pVLI~GE~GtGK~~lAr~iH~~s~   47 (329)
T TIGR02974        24 PVLIIGERGTGKELIAARLHYLSK   47 (329)
T ss_pred             CEEEECCCCChHHHHHHHHHHhcC
Confidence            479999999999999999987654

Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH

>PTZ00451 dephospho-CoA kinase; Provisional

Probab=92.28  E-value=0.98  Score=35.55  Aligned_cols=40  Identities=18%  Similarity=0.241  Sum_probs=29.5

Q ss_pred             EEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHH
Q psy4713           6 LILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWA   48 (103)
Q Consensus         6 lIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA   48 (103)
                      +||-+||.-||||-.+++.|.+.+|   +.|+.--.-.++.|.
T Consensus         2 ~iIGlTGgIgSGKStVs~~L~~~~G---~~viDaD~iar~l~~   41 (244)
T PTZ00451          2 ILIGLTGGIACGKSTVSRILREEHH---IEVIDADLVVRELQA   41 (244)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcC---CeEEehHHHHHHHHc
Confidence            6899999999999999999998764   445544333344443

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=92.27  E-value=0.17  Score=35.84  Aligned_cols=25  Identities=32%  Similarity=0.574  Sum_probs=22.6

Q ss_pred             EEEEecCcCCchhHHHHHHHHHhcc
Q psy4713           7 ILLFSGKRKSGKDFLTDYLLERIGS   31 (103)
Q Consensus         7 IiL~sGKrksGKDy~a~~l~~~l~~   31 (103)
                      +++|+|.+||||.=+++.|...++.
T Consensus         3 ~~~i~G~sGsGKttl~~~l~~~~~~   27 (179)
T TIGR02322         3 LIYVVGPSGAGKDTLLDYARARLAG   27 (179)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcCc
Confidence            6899999999999999999988753

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>PRK14738 gmk guanylate kinase; Provisional

Probab=92.19  E-value=0.18  Score=37.57  Aligned_cols=24  Identities=33%  Similarity=0.504  Sum_probs=20.6

Q ss_pred             eEEEEEecCcCCchhHHHHHHHHH
Q psy4713           5 KLILLFSGKRKSGKDFLTDYLLER   28 (103)
Q Consensus         5 klIiL~sGKrksGKDy~a~~l~~~   28 (103)
                      ..+|+|+|.+||||+=+++.|...
T Consensus        13 ~~~ivi~GpsG~GK~tl~~~L~~~   36 (206)
T PRK14738         13 PLLVVISGPSGVGKDAVLARMRER   36 (206)
T ss_pred             CeEEEEECcCCCCHHHHHHHHHhc
Confidence            456788999999999999999764

>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells

Probab=92.19  E-value=0.21  Score=34.77  Aligned_cols=52  Identities=19%  Similarity=0.268  Sum_probs=40.4

Q ss_pred             EecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHHH--cCccHHHhcCCCCc
Q psy4713          10 FSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQ--NGLEMDKLLGATKY   64 (103)
Q Consensus        10 ~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~~--~glDl~~LL~d~~Y   64 (103)
                      |-|.+||||.=++..|++.++   +..|+..+=++++-+..  +|..+++.+..+..
T Consensus         1 i~G~PgsGK~t~~~~la~~~~---~~~is~~~llr~~~~~~s~~g~~i~~~l~~g~~   54 (151)
T PF00406_consen    1 ILGPPGSGKGTQAKRLAKRYG---LVHISVGDLLREEIKSDSELGKQIQEYLDNGEL   54 (151)
T ss_dssp             EEESTTSSHHHHHHHHHHHHT---SEEEEHHHHHHHHHHTTSHHHHHHHHHHHTTSS
T ss_pred             CcCCCCCChHHHHHHHHHhcC---cceechHHHHHHHHhhhhHHHHHHHHHHHhhcc
Confidence            569999999999999999984   77888989888877653  35566666665553

Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....

>cd01131 PilT Pilus retraction ATPase PilT

Probab=92.18  E-value=0.25  Score=36.54  Aligned_cols=37  Identities=24%  Similarity=0.461  Sum_probs=31.9

Q ss_pred             EEEEecCcCCchhHHHHHHHHHhcc-cceEEEecchhh
Q psy4713           7 ILLFSGKRKSGKDFLTDYLLERIGS-QHCAIIRLSAPI   43 (103)
Q Consensus         7 IiL~sGKrksGKDy~a~~l~~~l~~-~~~~iv~iS~pi   43 (103)
                      +|+|+|..||||--+...+...+.. ....|+.+.+|+
T Consensus         3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~   40 (198)
T cd01131           3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPI   40 (198)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCc
Confidence            6899999999999999988887764 356889999997

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes

Probab=92.01  E-value=0.17  Score=41.26  Aligned_cols=32  Identities=13%  Similarity=0.301  Sum_probs=27.2

Q ss_pred             EEEEecCcCCchhHHHHHHHHHhccc--ceEEEe
Q psy4713           7 ILLFSGKRKSGKDFLTDYLLERIGSQ--HCAIIR   38 (103)
Q Consensus         7 IiL~sGKrksGKDy~a~~l~~~l~~~--~~~iv~   38 (103)
                      ||.|+|-+||||--+++.+.+.|++.  .+.++.
T Consensus         1 IIgItG~SGSGKTTv~~~l~~~l~~~g~~v~vI~   34 (277)
T cd02029           1 VIAVTGSSGAGTTTVKRAFEHIFAREGIHPAVVE   34 (277)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHhcCCceEEEe
Confidence            68899999999999999999999763  456655

PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.

>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain

Probab=92.00  E-value=0.29  Score=29.66  Aligned_cols=25  Identities=24%  Similarity=0.429  Sum_probs=22.8

Q ss_pred             EEEEecCcCCchhHHHHHHHHHhcc
Q psy4713           7 ILLFSGKRKSGKDFLTDYLLERIGS   31 (103)
Q Consensus         7 IiL~sGKrksGKDy~a~~l~~~l~~   31 (103)
                      |++|+|+.|+||-.++..+...+.+
T Consensus         1 ~~~~~g~~G~Gktt~~~~l~~~l~~   25 (99)
T cd01983           1 VIVVTGKGGVGKTTLAANLAAALAK   25 (99)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHH
Confidence            5789999999999999999999865

Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=91.96  E-value=0.2  Score=43.44  Aligned_cols=29  Identities=24%  Similarity=0.403  Sum_probs=25.5

Q ss_pred             CCeEEEEEecCcCCchhHHHHHHHHHhcc
Q psy4713           3 QPKLILLFSGKRKSGKDFLTDYLLERIGS   31 (103)
Q Consensus         3 ~pklIiL~sGKrksGKDy~a~~l~~~l~~   31 (103)
                      .+..+|+++|-+||||..+|..|..+|..
T Consensus       458 ~~~~~i~~~G~~gsGKst~a~~l~~~l~~  486 (632)
T PRK05506        458 QKPATVWFTGLSGSGKSTIANLVERRLHA  486 (632)
T ss_pred             CCcEEEEecCCCCchHHHHHHHHHHHHHH
Confidence            45678889999999999999999999864

>TIGR03708 poly_P_AMP_trns polyphosphate:AMP phosphotransferase

Probab=91.90  E-value=0.34  Score=42.13  Aligned_cols=46  Identities=17%  Similarity=0.192  Sum_probs=42.2

Q ss_pred             CCeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHH
Q psy4713           3 QPKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWA   48 (103)
Q Consensus         3 ~pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA   48 (103)
                      +.++||+|.|=-+||||-+.+.+.+.+....+.|.+++.|+.+|-+
T Consensus        38 ~~~vlIv~eG~DaaGKg~~I~~l~~~ldprg~~v~~~~~P~~eE~~   83 (493)
T TIGR03708        38 GFPVIILIEGWDGAGKGETINLLNEWMDPRGIETHAFGRPSDEERE   83 (493)
T ss_pred             CCeEEEEEeCCCCCChHHHHHHHHHHhCcCccEEEeCCCCCHHHhc
Confidence            4679999999999999999999999999989999999999887754

Members of this protein family contain a domain duplication. The characterized member from Acinetobacter johnsonii is polyphosphate:AMP phosphotransferase (PAP), which can transfer the terminal phosphate from poly(P) to AMP, yielding ADP. In the opposite direction, this enzyme can synthesize poly(P). Each domain of this protein family is homologous to polyphosphate kinase, an enzyme that can run in the forward direction to extend a polyphosphate chain with a new terminal phosphate from ATP, or in reverse to make ATP (or GTP) from ADP (or GDP).

>PRK14733 coaE dephospho-CoA kinase; Provisional

Probab=91.86  E-value=1.7  Score=33.36  Aligned_cols=40  Identities=18%  Similarity=0.152  Sum_probs=30.6

Q ss_pred             eEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHH
Q psy4713           5 KLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHW   47 (103)
Q Consensus         5 klIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~y   47 (103)
                      .++|-+||.-||||-.++..+.+.+|   +.++..-...++.|
T Consensus         6 ~~~IglTG~iGsGKStv~~~l~~~lg---~~vidaD~i~~~l~   45 (204)
T PRK14733          6 TYPIGITGGIASGKSTATRILKEKLN---LNVVCADTISREIT   45 (204)
T ss_pred             eEEEEEECCCCCCHHHHHHHHHHHcC---CeEEeccHHHHHHH
Confidence            37899999999999999999998876   34555444444444

>PRK08533 flagellar accessory protein FlaH; Reviewed

Probab=91.85  E-value=0.69  Score=35.29  Aligned_cols=58  Identities=14%  Similarity=0.226  Sum_probs=38.1

Q ss_pred             CeEEEEEecCcCCchhHHHH-HHHHHhcc-cceEEEecchhhHHH--HHHHcCccHHHhcCC
Q psy4713           4 PKLILLFSGKRKSGKDFLTD-YLLERIGS-QHCAIIRLSAPIKSH--WAKQNGLEMDKLLGA   61 (103)
Q Consensus         4 pklIiL~sGKrksGKDy~a~-~l~~~l~~-~~~~iv~iS~piK~~--yA~~~glDl~~LL~d   61 (103)
                      +.-+++++|..||||-.++- .+...+.. ..+..++..++..+.  .++..|.|++++...
T Consensus        23 ~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~~~~~~~~~~~~g~~~~~~~~~   84 (230)
T PRK08533         23 AGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQLTTTEFIKQMMSLGYDINKKLIS   84 (230)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhCCchHHHhhc
Confidence            34589999999999999974 44444333 455556655443332  235789999887554

>TIGR03263 guanyl_kin guanylate kinase

Probab=91.78  E-value=0.16  Score=35.76  Aligned_cols=24  Identities=33%  Similarity=0.436  Sum_probs=21.8

Q ss_pred             EEEEecCcCCchhHHHHHHHHHhc
Q psy4713           7 ILLFSGKRKSGKDFLTDYLLERIG   30 (103)
Q Consensus         7 IiL~sGKrksGKDy~a~~l~~~l~   30 (103)
                      ||+|.|.+||||.=++..|...+.
T Consensus         3 ii~l~G~~GsGKsTl~~~L~~~~~   26 (180)
T TIGR03263         3 LIVISGPSGVGKSTLVKALLEEDP   26 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHccCc
Confidence            789999999999999999998764

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>TIGR01817 nifA Nif-specific regulatory protein

Probab=91.57  E-value=0.2  Score=42.20  Aligned_cols=25  Identities=16%  Similarity=0.291  Sum_probs=22.1

Q ss_pred             EEEEEecCcCCchhHHHHHHHHHhc
Q psy4713           6 LILLFSGKRKSGKDFLTDYLLERIG   30 (103)
Q Consensus         6 lIiL~sGKrksGKDy~a~~l~~~l~   30 (103)
                      .-|||+|++|+||.++|..++....
T Consensus       220 ~pvli~Ge~GtGK~~lA~~ih~~s~  244 (534)
T TIGR01817       220 STVLLRGESGTGKELIAKAIHYLSP  244 (534)
T ss_pred             CCEEEECCCCccHHHHHHHHHHhCC
Confidence            3479999999999999999998754

This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.

>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family

Probab=91.48  E-value=0.8  Score=35.45  Aligned_cols=56  Identities=16%  Similarity=0.347  Sum_probs=40.5

Q ss_pred             CeEEEEEecCcCCchhHHHHHHHHH-hcc-cceEEEecchhhH------HHHHHHcCccHHHhc
Q psy4713           4 PKLILLFSGKRKSGKDFLTDYLLER-IGS-QHCAIIRLSAPIK------SHWAKQNGLEMDKLL   59 (103)
Q Consensus         4 pklIiL~sGKrksGKDy~a~~l~~~-l~~-~~~~iv~iS~piK------~~yA~~~glDl~~LL   59 (103)
                      +--++||+|.+|+||=-++-.+.-. +.. ..|..+++-.|..      +.-|...|+|++++.
T Consensus        35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~Ee~~~~~~~~l~~~a~~~g~d~~~~~   98 (259)
T TIGR03878        35 AYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVESPANFVYTSLKERAKAMGVDFDKIE   98 (259)
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCCchHHHHHHHHHHHHcCCCHHHHh
Confidence            4568999999999998777765443 222 5788888877653      224677899998764

This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.

>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional

Probab=91.42  E-value=0.22  Score=42.06  Aligned_cols=25  Identities=16%  Similarity=0.248  Sum_probs=22.1

Q ss_pred             EEEEecCcCCchhHHHHHHHHHhcc
Q psy4713           7 ILLFSGKRKSGKDFLTDYLLERIGS   31 (103)
Q Consensus         7 IiL~sGKrksGKDy~a~~l~~~l~~   31 (103)
                      =|||+|++|+||.++|..++.....
T Consensus       212 pVlI~Ge~GtGK~~~A~~ih~~s~r  236 (509)
T PRK05022        212 NVLILGETGVGKELVARAIHAASPR  236 (509)
T ss_pred             cEEEECCCCccHHHHHHHHHHhCCc
Confidence            4899999999999999999987653

>PRK03839 putative kinase; Provisional

Probab=91.37  E-value=0.26  Score=35.11  Aligned_cols=32  Identities=25%  Similarity=0.509  Sum_probs=26.0

Q ss_pred             EEEEecCcCCchhHHHHHHHHHhcccceEEEecch
Q psy4713           7 ILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSA   41 (103)
Q Consensus         7 IiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~   41 (103)
                      +|+|+|-+||||--++..|+++++   ...+.+.+
T Consensus         2 ~I~l~G~pGsGKsT~~~~La~~~~---~~~id~d~   33 (180)
T PRK03839          2 IIAITGTPGVGKTTVSKLLAEKLG---YEYVDLTE   33 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC---CcEEehhh
Confidence            588999999999999999999985   34444444

>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family

Probab=91.35  E-value=0.48  Score=43.18  Aligned_cols=55  Identities=20%  Similarity=0.285  Sum_probs=39.4

Q ss_pred             CCeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHHHcCccHHHhcCCC
Q psy4713           3 QPKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQNGLEMDKLLGAT   62 (103)
Q Consensus         3 ~pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~~~glDl~~LL~d~   62 (103)
                      .|.-++||.|.+|+||=++|..|++.+......++++.-   .+|...|.  ..+|++++
T Consensus       594 ~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dm---se~~~~~~--~~~l~g~~  648 (852)
T TIGR03345       594 KPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINM---SEFQEAHT--VSRLKGSP  648 (852)
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeH---HHhhhhhh--hccccCCC
Confidence            466689999999999999999999998654445555552   25655553  34676664

Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.

>PRK13808 adenylate kinase; Provisional

Probab=91.16  E-value=0.37  Score=39.91  Aligned_cols=53  Identities=17%  Similarity=0.302  Sum_probs=39.8

Q ss_pred             EEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHHH--cCccHHHhcCCCC
Q psy4713           8 LLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQ--NGLEMDKLLGATK   63 (103)
Q Consensus         8 iL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~~--~glDl~~LL~d~~   63 (103)
                      |+|.|-.||||.-.+..|.+.++   +..+++.+=+.++.+..  +|..+.++++.+.
T Consensus         3 Iiv~GpPGSGK~T~a~~LA~~yg---l~~is~gdlLR~~i~~~s~~g~~~~~~~~~G~   57 (333)
T PRK13808          3 LILLGPPGAGKGTQAQRLVQQYG---IVQLSTGDMLRAAVAAGTPVGLKAKDIMASGG   57 (333)
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC---CceecccHHHHHHhhcCChhhHHHHHHHHcCC
Confidence            67799999999999999999974   67788888887765443  3445555655544

>PRK14732 coaE dephospho-CoA kinase; Provisional

Probab=91.12  E-value=1.4  Score=33.00  Aligned_cols=38  Identities=21%  Similarity=0.141  Sum_probs=28.2

Q ss_pred             EEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHH
Q psy4713           7 ILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWA   48 (103)
Q Consensus         7 IiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA   48 (103)
                      +|.+||..||||-.+++.+.. +|   +.+++...-.++.|.
T Consensus         1 ~i~itG~~gsGKst~~~~l~~-~g---~~~i~~D~i~~~~~~   38 (196)
T PRK14732          1 LIGITGMIGGGKSTALKILEE-LG---AFGISADRLAKRYTE   38 (196)
T ss_pred             CEEEECCCCccHHHHHHHHHH-CC---CEEEecchHHHHHHh
Confidence            478999999999999998875 33   666666555555544

>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals

Probab=91.12  E-value=0.46  Score=36.32  Aligned_cols=38  Identities=18%  Similarity=0.307  Sum_probs=32.5

Q ss_pred             CCeEEEEEecCcCCchhHHHHHHHHHhccc---ceEEEecc
Q psy4713           3 QPKLILLFSGKRKSGKDFLTDYLLERIGSQ---HCAIIRLS   40 (103)
Q Consensus         3 ~pklIiL~sGKrksGKDy~a~~l~~~l~~~---~~~iv~iS   40 (103)
                      .+.++|-++|+-||||=.+.+.|.+.+.+.   ...++.++
T Consensus        18 ~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~~~~~~~~i~fn   58 (325)
T PF07693_consen   18 DDPFVIGLYGEWGSGKSSFLNMLKEELKEDNKEKYIFIYFN   58 (325)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHhcccccceeeEEEc
Confidence            578999999999999999999999999875   56666554

Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].

>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family

Probab=91.11  E-value=0.2  Score=34.96  Aligned_cols=24  Identities=29%  Similarity=0.529  Sum_probs=21.5

Q ss_pred             EEEecCcCCchhHHHHHHHHHhcc
Q psy4713           8 LLFSGKRKSGKDFLTDYLLERIGS   31 (103)
Q Consensus         8 iL~sGKrksGKDy~a~~l~~~l~~   31 (103)
                      |+++|.+||||-.++..|...++.
T Consensus         1 i~l~G~~GsGKSTla~~l~~~l~~   24 (163)
T TIGR01313         1 FVLMGVAGSGKSTIASALAHRLGA   24 (163)
T ss_pred             CEEECCCCCCHHHHHHHHHHhcCC
Confidence            468899999999999999999863

This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.

>PRK14526 adenylate kinase; Provisional

Probab=91.01  E-value=0.38  Score=36.61  Aligned_cols=54  Identities=19%  Similarity=0.287  Sum_probs=40.5

Q ss_pred             EEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHHH--cCccHHHhcCCCCc
Q psy4713           8 LLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQ--NGLEMDKLLGATKY   64 (103)
Q Consensus         8 iL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~~--~glDl~~LL~d~~Y   64 (103)
                      |+|.|..||||.-.+..|++.++   ...++..+-++++....  .|..+.+++..+.+
T Consensus         3 i~l~G~pGsGKsT~a~~La~~~~---~~~is~G~llr~~~~~~t~~g~~i~~~~~~g~l   58 (211)
T PRK14526          3 LVFLGPPGSGKGTIAKILSNELN---YYHISTGDLFRENILNSTPLGKEIKQIVENGQL   58 (211)
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC---CceeecChHHHHhcccCChhhHHHHHHHHcCcc
Confidence            66899999999999999998874   56677777777766542  35566777666654

>PLN02796 D-glycerate 3-kinase

Probab=91.00  E-value=0.44  Score=39.82  Aligned_cols=38  Identities=21%  Similarity=0.280  Sum_probs=31.4

Q ss_pred             CeEEEEEecCcCCchhHHHHHHHHHhccc--ceEEEecch
Q psy4713           4 PKLILLFSGKRKSGKDFLTDYLLERIGSQ--HCAIIRLSA   41 (103)
Q Consensus         4 pklIiL~sGKrksGKDy~a~~l~~~l~~~--~~~iv~iS~   41 (103)
                      +.+||-|+|.+||||=-++..|...+...  .+.+|++-+
T Consensus        99 ~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDd  138 (347)
T PLN02796         99 PPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDD  138 (347)
T ss_pred             CCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECC
Confidence            66999999999999999999999998753  456666643

>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]

Probab=90.91  E-value=0.33  Score=39.75  Aligned_cols=41  Identities=29%  Similarity=0.436  Sum_probs=35.1

Q ss_pred             eEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHH
Q psy4713           5 KLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKS   45 (103)
Q Consensus         5 klIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~   45 (103)
                      ..|+.+||.-||||=|+...+...+.++...++-|+.|+=.
T Consensus        51 qg~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~s   91 (269)
T COG3267          51 QGILAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTLS   91 (269)
T ss_pred             CceEEEEecCCCchhHHHHHHHHhcCCCceEEEEecCcchh
Confidence            45899999999999999998888888888888888888644

>PRK00698 tmk thymidylate kinase; Validated

Probab=90.90  E-value=0.73  Score=32.83  Aligned_cols=27  Identities=19%  Similarity=0.294  Sum_probs=24.3

Q ss_pred             eEEEEEecCcCCchhHHHHHHHHHhcc
Q psy4713           5 KLILLFSGKRKSGKDFLTDYLLERIGS   31 (103)
Q Consensus         5 klIiL~sGKrksGKDy~a~~l~~~l~~   31 (103)
                      ..+|+|.|-.||||.-+++.|.+.+..
T Consensus         3 ~~~I~ieG~~gsGKsT~~~~L~~~l~~   29 (205)
T PRK00698          3 GMFITIEGIDGAGKSTQIELLKELLEQ   29 (205)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            458889999999999999999999865

>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated

Probab=90.67  E-value=0.46  Score=34.95  Aligned_cols=43  Identities=23%  Similarity=0.415  Sum_probs=32.6

Q ss_pred             EEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHHH
Q psy4713           7 ILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQ   50 (103)
Q Consensus         7 IiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~~   50 (103)
                      ++||+|-.||||--.|+.+...++. .+.-+.-..|...++++.
T Consensus         3 ~ili~G~~~sGKS~~a~~l~~~~~~-~~~~iat~~~~~~e~~~r   45 (170)
T PRK05800          3 LILVTGGARSGKSRFAERLAAQSGL-QVLYIATAQPFDDEMAAR   45 (170)
T ss_pred             EEEEECCCCccHHHHHHHHHHHcCC-CcEeCcCCCCChHHHHHH
Confidence            6899999999999999999998763 333444555776776553

>PRK09302 circadian clock protein KaiC; Reviewed

Probab=90.66  E-value=0.85  Score=38.31  Aligned_cols=57  Identities=18%  Similarity=0.236  Sum_probs=44.7

Q ss_pred             CeEEEEEecCcCCchhHHHHHHHH-Hhcc--cceEEEecchhhHH--HHHHHcCccHHHhcC
Q psy4713           4 PKLILLFSGKRKSGKDFLTDYLLE-RIGS--QHCAIIRLSAPIKS--HWAKQNGLEMDKLLG   60 (103)
Q Consensus         4 pklIiL~sGKrksGKDy~a~~l~~-~l~~--~~~~iv~iS~piK~--~yA~~~glDl~~LL~   60 (103)
                      +--++||+|..|+||--++-.+.. -+..  ..|..|++.+|..+  +++.+.|.|++++..
T Consensus        30 ~Gs~~li~G~pGsGKT~l~~qf~~~~~~~~ge~~lyis~ee~~~~i~~~~~~~g~d~~~~~~   91 (509)
T PRK09302         30 KGRPTLVSGTAGTGKTLFALQFLVNGIKRFDEPGVFVTFEESPEDIIRNVASFGWDLQKLID   91 (509)
T ss_pred             CCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCEEEEEccCCHHHHHHHHHHcCCCHHHHhh
Confidence            356889999999999988876543 3322  67899999999887  566788999999864

>PHA02530 pseT polynucleotide kinase; Provisional

Probab=90.50  E-value=0.31  Score=37.25  Aligned_cols=25  Identities=24%  Similarity=0.198  Sum_probs=22.3

Q ss_pred             EEEEEecCcCCchhHHHHHHHHHhc
Q psy4713           6 LILLFSGKRKSGKDFLTDYLLERIG   30 (103)
Q Consensus         6 lIiL~sGKrksGKDy~a~~l~~~l~   30 (103)
                      .+|+++|..||||-.+|..|++++.
T Consensus         3 ~liil~G~pGSGKSTla~~L~~~~~   27 (300)
T PHA02530          3 KIILTVGVPGSGKSTWAREFAAKNP   27 (300)
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHCC
Confidence            4677799999999999999999983

>TIGR00554 panK_bact pantothenate kinase, bacterial type

Probab=90.44  E-value=0.58  Score=37.75  Aligned_cols=39  Identities=15%  Similarity=0.227  Sum_probs=32.5

Q ss_pred             CCeEEEEEecCcCCchhHHHHHHHHHhcc----cceEEEecch
Q psy4713           3 QPKLILLFSGKRKSGKDFLTDYLLERIGS----QHCAIIRLSA   41 (103)
Q Consensus         3 ~pklIiL~sGKrksGKDy~a~~l~~~l~~----~~~~iv~iS~   41 (103)
                      +.+.||-|+|-+||||--++..|...+..    ..+.+++..+
T Consensus        60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~  102 (290)
T TIGR00554        60 KIPYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDG  102 (290)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEeccc
Confidence            45689999999999999999999888862    4677888776

Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.

>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional

Probab=90.38  E-value=0.49  Score=42.85  Aligned_cols=52  Identities=27%  Similarity=0.501  Sum_probs=38.2

Q ss_pred             CCeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHHHcCccHHHhcCCC
Q psy4713           3 QPKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQNGLEMDKLLGAT   62 (103)
Q Consensus         3 ~pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~~~glDl~~LL~d~   62 (103)
                      .|.-.+||.|.+|+||-++|..++..++   +..+++..   .+|...|  +..+|.+++
T Consensus       486 kp~~~~Lf~GP~GvGKT~lAk~LA~~l~---~~~i~id~---se~~~~~--~~~~LiG~~  537 (758)
T PRK11034        486 KPVGSFLFAGPTGVGKTEVTVQLSKALG---IELLRFDM---SEYMERH--TVSRLIGAP  537 (758)
T ss_pred             CCcceEEEECCCCCCHHHHHHHHHHHhC---CCcEEeec---hhhcccc--cHHHHcCCC
Confidence            3566899999999999999999999985   34555543   2565555  357787754

>PRK09519 recA DNA recombination protein RecA; Reviewed

Probab=90.34  E-value=0.89  Score=41.79  Aligned_cols=65  Identities=18%  Similarity=0.218  Sum_probs=51.4

Q ss_pred             CeEEEEEecCcCCchhHHHHHHHH-Hhcc-cceEEEecchhhHHHHHHHcCccHHHhcCCCCcHHHh
Q psy4713           4 PKLILLFSGKRKSGKDFLTDYLLE-RIGS-QHCAIIRLSAPIKSHWAKQNGLEMDKLLGATKYKEKY   68 (103)
Q Consensus         4 pklIiL~sGKrksGKDy~a~~l~~-~l~~-~~~~iv~iS~piK~~yA~~~glDl~~LL~d~~YKE~~   68 (103)
                      +--|++|.|..+|||=-++-.+.. .... ..|..+..-+++..++|+..|+|+++++-..++-..+
T Consensus        59 ~GsiteI~G~~GsGKTtLal~~~~~a~~~G~~v~yId~E~t~~~~~A~~lGvDl~~llv~~~~~~E~  125 (790)
T PRK09519         59 RGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTGEQ  125 (790)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchhHHHHHHcCCChhHeEEecCCCHHH
Confidence            456889999999999888755433 3222 6788888888888899999999999998877776554

>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional

Probab=90.33  E-value=0.32  Score=41.49  Aligned_cols=23  Identities=35%  Similarity=0.421  Sum_probs=20.6

Q ss_pred             EEEecCcCCchhHHHHHHHHHhc
Q psy4713           8 LLFSGKRKSGKDFLTDYLLERIG   30 (103)
Q Consensus         8 iL~sGKrksGKDy~a~~l~~~l~   30 (103)
                      |||+|++|+||+++|..++....
T Consensus       230 vlI~GE~GtGK~~lA~aiH~~s~  252 (520)
T PRK10820        230 LLITGDTGTGKDLLAYACHLRSP  252 (520)
T ss_pred             EEEECCCCccHHHHHHHHHHhCC
Confidence            88999999999999999987644

>PRK08939 primosomal protein DnaI; Reviewed

Probab=90.32  E-value=0.84  Score=36.72  Aligned_cols=34  Identities=15%  Similarity=0.304  Sum_probs=27.7

Q ss_pred             EEEEecCcCCchhHHHHHHHHHhcc--cceEEEecc
Q psy4713           7 ILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIRLS   40 (103)
Q Consensus         7 IiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~iS   40 (103)
                      =++++|..|+||=|++..+...+..  ..+..+..+
T Consensus       158 gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~  193 (306)
T PRK08939        158 GLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFP  193 (306)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHH
Confidence            4789999999999999999999865  455556654

>smart00763 AAA_PrkA PrkA AAA domain

Probab=90.23  E-value=1.1  Score=37.63  Aligned_cols=29  Identities=28%  Similarity=0.355  Sum_probs=26.8

Q ss_pred             CCeEEEEEecCcCCchhHHHHHHHHHhcc
Q psy4713           3 QPKLILLFSGKRKSGKDFLTDYLLERIGS   31 (103)
Q Consensus         3 ~pklIiL~sGKrksGKDy~a~~l~~~l~~   31 (103)
                      .++-|+++.|..||||--+++.|+..++.
T Consensus        76 ~~r~il~L~GPPGsGKStla~~La~~l~~  104 (361)
T smart00763       76 ERKQILYLLGPVGGGKSSLVECLKRGLEE  104 (361)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            46789999999999999999999999976

This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.

>PRK13946 shikimate kinase; Provisional

Probab=90.14  E-value=0.32  Score=35.34  Aligned_cols=26  Identities=19%  Similarity=0.253  Sum_probs=23.3

Q ss_pred             EEEEEecCcCCchhHHHHHHHHHhcc
Q psy4713           6 LILLFSGKRKSGKDFLTDYLLERIGS   31 (103)
Q Consensus         6 lIiL~sGKrksGKDy~a~~l~~~l~~   31 (103)
                      ..|+|+|-+||||.-++..|+++||-
T Consensus        11 ~~I~l~G~~GsGKsti~~~LA~~Lg~   36 (184)
T PRK13946         11 RTVVLVGLMGAGKSTVGRRLATMLGL   36 (184)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHcCC
Confidence            35889999999999999999999864

>COG3709 Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism]

Probab=90.12  E-value=0.56  Score=36.82  Aligned_cols=32  Identities=22%  Similarity=0.350  Sum_probs=25.6

Q ss_pred             EEEEEecCcCCchhHHHHHHHHHhccc-ceEEE
Q psy4713           6 LILLFSGKRKSGKDFLTDYLLERIGSQ-HCAII   37 (103)
Q Consensus         6 lIiL~sGKrksGKDy~a~~l~~~l~~~-~~~iv   37 (103)
                      ..|++.|.+|||||=+-+....++... .+.++
T Consensus         6 ~lI~vvGPSGAGKDtl~~~ar~~l~~~~r~~fv   38 (192)
T COG3709           6 RLIAVVGPSGAGKDTLLDAARARLAGRPRLHFV   38 (192)
T ss_pred             eEEEEECCCCCChHHHHHHHHHHhccCCceEEE
Confidence            467788999999999999999998763 34443

>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=90.04  E-value=0.45  Score=40.29  Aligned_cols=53  Identities=21%  Similarity=0.345  Sum_probs=40.9

Q ss_pred             CCeEEEEEecCcCCchhHHHHHHHHHhcc-cceEEEecchhhHHHHHHHcCccH
Q psy4713           3 QPKLILLFSGKRKSGKDFLTDYLLERIGS-QHCAIIRLSAPIKSHWAKQNGLEM   55 (103)
Q Consensus         3 ~pklIiL~sGKrksGKDy~a~~l~~~l~~-~~~~iv~iS~piK~~yA~~~glDl   55 (103)
                      .|+=.|||||..||||-=--..+..-+++ ...+|+.|-|||-=-|....-|.-
T Consensus       123 ~~~GLILVTGpTGSGKSTTlAamId~iN~~~~~HIlTIEDPIE~vh~skkslI~  176 (353)
T COG2805         123 SPRGLILVTGPTGSGKSTTLAAMIDYINKHKAKHILTIEDPIEYVHESKKSLIN  176 (353)
T ss_pred             CCCceEEEeCCCCCcHHHHHHHHHHHHhccCCcceEEecCchHhhhcchHhhhh
Confidence            46668999999999998877777777777 678899999999655554433333

>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH)

Probab=89.97  E-value=0.49  Score=32.88  Aligned_cols=31  Identities=19%  Similarity=0.308  Sum_probs=25.0

Q ss_pred             EEEecCcCCchhHHHHHHHHHhcc--cceEEEe
Q psy4713           8 LLFSGKRKSGKDFLTDYLLERIGS--QHCAIIR   38 (103)
Q Consensus         8 iL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~   38 (103)
                      |+|+||.|+||-.++..+...+.+  .++.++.
T Consensus         2 i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~id   34 (116)
T cd02034           2 IAITGKGGVGKTTIAALLARYLAEKGKPVLAID   34 (116)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence            789999999999999999998865  3344444

CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.

>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]

Probab=89.96  E-value=1.4  Score=34.85  Aligned_cols=35  Identities=23%  Similarity=0.357  Sum_probs=29.1

Q ss_pred             CCCeEEEEEecCcCCchhHHHHHHHHHhcccceEE
Q psy4713           2 TQPKLILLFSGKRKSGKDFLTDYLLERIGSQHCAI   36 (103)
Q Consensus         2 ~~pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~i   36 (103)
                      .++..+|-|||-+||||-=+|+.|.+.|-+.-.++
T Consensus        20 ~~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~   54 (197)
T COG0529          20 GQKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHV   54 (197)
T ss_pred             CCCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeE
Confidence            45668999999999999999999999997733333

>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []

Probab=89.84  E-value=1.2  Score=35.34  Aligned_cols=36  Identities=17%  Similarity=0.242  Sum_probs=25.4

Q ss_pred             EEEEecCcCCchhHHHHHHHHHhcccceEEEecchh
Q psy4713           7 ILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAP   42 (103)
Q Consensus         7 IiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~p   42 (103)
                      .|+++|-.+|||=..|..|++.|.+....++-+|+.
T Consensus         3 Liil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~   38 (270)
T PF08433_consen    3 LIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDD   38 (270)
T ss_dssp             EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-TH
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEccc
Confidence            578999999999999999999998754445445543

The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.

>PRK06761 hypothetical protein; Provisional

Probab=89.81  E-value=0.64  Score=37.55  Aligned_cols=27  Identities=15%  Similarity=0.252  Sum_probs=24.4

Q ss_pred             EEEEEecCcCCchhHHHHHHHHHhccc
Q psy4713           6 LILLFSGKRKSGKDFLTDYLLERIGSQ   32 (103)
Q Consensus         6 lIiL~sGKrksGKDy~a~~l~~~l~~~   32 (103)
                      .+|+|+|..||||.=++..|.+.+...
T Consensus         4 ~lIvI~G~~GsGKTTla~~L~~~L~~~   30 (282)
T PRK06761          4 KLIIIEGLPGFGKSTTAKMLNDILSQN   30 (282)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHhcCcC
Confidence            478999999999999999999999763

>PF13189 Cytidylate_kin2: Cytidylate kinase-like family; PDB: 3FDI_A

Probab=89.77  E-value=0.35  Score=35.29  Aligned_cols=49  Identities=22%  Similarity=0.329  Sum_probs=28.6

Q ss_pred             EEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHHHcCccHHHhcC
Q psy4713           7 ILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQNGLEMDKLLG   60 (103)
Q Consensus         7 IiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~~~glDl~~LL~   60 (103)
                      ||-||+..|||+..++..|+++||   ...  ++.-+=.+-|+++|++.+.+-.
T Consensus         1 IITIsr~~Gsgg~~Ia~~LA~~Lg---~~~--~d~~ii~~~a~~~~~~~~~~~~   49 (179)
T PF13189_consen    1 IITISRQYGSGGREIAERLAEKLG---YPY--YDREIIEEAAKESGISEEEFEE   49 (179)
T ss_dssp             EEEEEE-TTSSHHHHHHHHHHHCT-----E--E-HHHHHHCT------------
T ss_pred             CEEECCCCCCChHHHHHHHHHHcC---Ccc--CCHHHHHHHHHHccCCHHHHHH
Confidence            789999999999999999999997   332  4556667778888888777633

>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes

Probab=89.67  E-value=0.54  Score=37.09  Aligned_cols=34  Identities=26%  Similarity=0.351  Sum_probs=29.1

Q ss_pred             EEEEecCcCCchhHHHHHHHHHhcccceEEEecc
Q psy4713           7 ILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLS   40 (103)
Q Consensus         7 IiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS   40 (103)
                      ||.|+|.+||||--++..|...+....+.++..-
T Consensus         1 iigI~G~sGsGKSTl~~~L~~ll~~~~~~vi~~D   34 (273)
T cd02026           1 IIGVAGDSGCGKSTFLRRLTSLFGSDLVTVICLD   34 (273)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhhCCCceEEEECc
Confidence            5789999999999999999999987667677653

This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.

>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []

Probab=89.65  E-value=0.82  Score=33.50  Aligned_cols=71  Identities=23%  Similarity=0.331  Sum_probs=39.6

Q ss_pred             CCeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHHHcCccHHHhcC--CCCcHHHhHHHHHHHHHHH
Q psy4713           3 QPKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQNGLEMDKLLG--ATKYKEKYRAEMITWSEAE   79 (103)
Q Consensus         3 ~pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~~~glDl~~LL~--d~~YKE~~R~~mi~wge~~   79 (103)
                      +.+.++++-|-.||||-.+++.+...++...+.+|. .|-+|+..     -++++|+.  ....-+..+++.-.|.+..
T Consensus        13 ~~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~-~D~~r~~~-----p~~~~~~~~~~~~~~~~~~~~a~~~~~~~   85 (199)
T PF06414_consen   13 EKPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVID-ADEFRQFH-----PDYDELLKADPDEASELTQKEASRLAEKL   85 (199)
T ss_dssp             SS-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE--GGGGGGGS-----TTHHHHHHHHCCCTHHHHHHHHHHHHHHH
T ss_pred             cCCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEe-hHHHHHhc-----cchhhhhhhhhhhhHHHHHHHHHHHHHHH
Confidence            456788899999999999999999998422333332 34343322     12333222  3344455666666666553

It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.

>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT)

Probab=89.63  E-value=0.44  Score=34.07  Aligned_cols=26  Identities=19%  Similarity=0.377  Sum_probs=23.6

Q ss_pred             EEEEEecCcCCchhHHHHHHHHHhcc
Q psy4713           6 LILLFSGKRKSGKDFLTDYLLERIGS   31 (103)
Q Consensus         6 lIiL~sGKrksGKDy~a~~l~~~l~~   31 (103)
                      .||+++|-+||||==++..|++.++.
T Consensus         3 ~~i~l~G~~gsGKst~a~~l~~~~~~   28 (175)
T cd00227           3 RIIILNGGSSAGKSSIARALQSVLAE   28 (175)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhhCC
Confidence            48999999999999999999999754

Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.

>PRK00440 rfc replication factor C small subunit; Reviewed

Probab=89.40  E-value=0.41  Score=36.32  Aligned_cols=24  Identities=29%  Similarity=0.351  Sum_probs=21.6

Q ss_pred             EEEecCcCCchhHHHHHHHHHhcc
Q psy4713           8 LLFSGKRKSGKDFLTDYLLERIGS   31 (103)
Q Consensus         8 iL~sGKrksGKDy~a~~l~~~l~~   31 (103)
                      ++|+|.+|+||..++..+...+..
T Consensus        41 ~ll~G~~G~GKt~~~~~l~~~l~~   64 (319)
T PRK00440         41 LLFAGPPGTGKTTAALALARELYG   64 (319)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHcC
Confidence            599999999999999999988753

>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily

Probab=89.39  E-value=0.62  Score=34.66  Aligned_cols=27  Identities=30%  Similarity=0.485  Sum_probs=23.6

Q ss_pred             eEEEEEecCcCCchhHHHHHHHHHhcc
Q psy4713           5 KLILLFSGKRKSGKDFLTDYLLERIGS   31 (103)
Q Consensus         5 klIiL~sGKrksGKDy~a~~l~~~l~~   31 (103)
                      .-+++|+|++||||=.++..+.+.+..
T Consensus        43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~   69 (269)
T TIGR03015        43 EGFILITGEVGAGKTTLIRNLLKRLDQ   69 (269)
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHhcCC
Confidence            337889999999999999999998864

Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.

>TIGR01420 pilT_fam pilus retraction protein PilT

Probab=89.35  E-value=0.54  Score=37.89  Aligned_cols=42  Identities=26%  Similarity=0.472  Sum_probs=34.9

Q ss_pred             CCeEEEEEecCcCCchhHHHHHHHHHhcc-cceEEEecchhhH
Q psy4713           3 QPKLILLFSGKRKSGKDFLTDYLLERIGS-QHCAIIRLSAPIK   44 (103)
Q Consensus         3 ~pklIiL~sGKrksGKDy~a~~l~~~l~~-~~~~iv~iS~piK   44 (103)
                      .|+-+|||+|..||||--....+...+.+ ...+|+.+.+|+-
T Consensus       120 ~~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E  162 (343)
T TIGR01420       120 RPRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIE  162 (343)
T ss_pred             hcCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChh
Confidence            35678999999999999999988887764 3578999999954

This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.

>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A

Probab=89.31  E-value=1.2  Score=32.96  Aligned_cols=51  Identities=14%  Similarity=0.218  Sum_probs=41.1

Q ss_pred             CCeEEEEEecCcCCchhHHHHHHHHHhcc--cceEEEecchhhHHHHHHHcCc
Q psy4713           3 QPKLILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIRLSAPIKSHWAKQNGL   53 (103)
Q Consensus         3 ~pklIiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~iS~piK~~yA~~~gl   53 (103)
                      ++.-+.+++|..|+||=|+...+.+.+..  ..+.++..++....+.++..|.
T Consensus        16 ~~~~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~~Aa~~L~~~~~~   68 (196)
T PF13604_consen   16 SGDRVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTNKAAKELREKTGI   68 (196)
T ss_dssp             CTCSEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHHTS
T ss_pred             cCCeEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcHHHHHHHHHhhCc
Confidence            34557889999999999999998888765  5788888888888888888664

>PLN03046 D-glycerate 3-kinase; Provisional

Probab=89.19  E-value=0.77  Score=40.05  Aligned_cols=38  Identities=24%  Similarity=0.271  Sum_probs=31.2

Q ss_pred             CeEEEEEecCcCCchhHHHHHHHHHhcc--cceEEEecch
Q psy4713           4 PKLILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIRLSA   41 (103)
Q Consensus         4 pklIiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~iS~   41 (103)
                      +.+||-|+|-+||||=.++..|...+..  ..+.+|+|-+
T Consensus       211 ~PlIIGIsG~qGSGKSTLa~~L~~lL~~~g~~vgvISiDD  250 (460)
T PLN03046        211 PPLVIGFSAPQGCGKTTLVFALDYLFRVTGRKSATLSIDD  250 (460)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHhcccCCceEEEEECC
Confidence            5699999999999999999999888853  3466666654

>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX

Probab=89.17  E-value=0.69  Score=36.42  Aligned_cols=27  Identities=22%  Similarity=0.397  Sum_probs=23.2

Q ss_pred             CeEEEEEecCcCCchhHHHHHHHHHhc
Q psy4713           4 PKLILLFSGKRKSGKDFLTDYLLERIG   30 (103)
Q Consensus         4 pklIiL~sGKrksGKDy~a~~l~~~l~   30 (103)
                      |.+-+||+|.+|+||-.+|..+...+.
T Consensus        57 ~~~~vll~G~pGTGKT~lA~~ia~~l~   83 (284)
T TIGR02880        57 PTLHMSFTGNPGTGKTTVALRMAQILH   83 (284)
T ss_pred             CCceEEEEcCCCCCHHHHHHHHHHHHH
Confidence            667899999999999999987777664

Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.

>PRK12337 2-phosphoglycerate kinase; Provisional

Probab=89.05  E-value=0.88  Score=39.71  Aligned_cols=58  Identities=21%  Similarity=0.255  Sum_probs=42.8

Q ss_pred             CeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHHHcCccHHHhcCCCCc
Q psy4713           4 PKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQNGLEMDKLLGATKY   64 (103)
Q Consensus         4 pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~~~glDl~~LL~d~~Y   64 (103)
                      +..||+|.|-+||||--++..|+.+++-   ..+--+|.+++.+.....-++...|..+.|
T Consensus       254 ~p~vil~~G~~G~GKSt~a~~LA~~lg~---~~ii~tD~iR~~lr~~i~~e~~P~Lh~Sty  311 (475)
T PRK12337        254 RPLHVLIGGVSGVGKSVLASALAYRLGI---TRIVSTDAVREVLRAMVSKDLLPTLHASTF  311 (475)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHcCC---cEEeehhHHHHHHHhhcchhhccchhhchh
Confidence            4689999999999999999999999863   223347888888877666555555443333

>PRK10923 glnG nitrogen regulation protein NR(I); Provisional

Probab=89.03  E-value=0.43  Score=38.86  Aligned_cols=28  Identities=18%  Similarity=0.380  Sum_probs=23.7

Q ss_pred             CeEEEEEecCcCCchhHHHHHHHHHhcc
Q psy4713           4 PKLILLFSGKRKSGKDFLTDYLLERIGS   31 (103)
Q Consensus         4 pklIiL~sGKrksGKDy~a~~l~~~l~~   31 (103)
                      ..+-|+++|++|+||..+|..++.....
T Consensus       160 ~~~~vli~Ge~GtGK~~lA~~ih~~s~~  187 (469)
T PRK10923        160 SSISVLINGESGTGKELVAHALHRHSPR  187 (469)
T ss_pred             cCCeEEEEeCCCCcHHHHHHHHHhcCCC
Confidence            3456899999999999999999987653

>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed

Probab=89.02  E-value=0.65  Score=37.62  Aligned_cols=30  Identities=33%  Similarity=0.547  Sum_probs=25.3

Q ss_pred             CCCCeEEEEEecCcCCchhHHHHHHHHHhcc
Q psy4713           1 MTQPKLILLFSGKRKSGKDFLTDYLLERIGS   31 (103)
Q Consensus         1 ~~~pklIiL~sGKrksGKDy~a~~l~~~l~~   31 (103)
                      |.+|+ ||+|+|..+|||--+|..|++.++.
T Consensus         1 ~~~~~-~i~i~GptgsGKt~la~~la~~~~~   30 (307)
T PRK00091          1 MMKPK-VIVIVGPTASGKTALAIELAKRLNG   30 (307)
T ss_pred             CCCce-EEEEECCCCcCHHHHHHHHHHhCCC
Confidence            44554 7889999999999999999999863

>PHA00729 NTP-binding motif containing protein

Probab=88.95  E-value=1.2  Score=35.15  Aligned_cols=43  Identities=16%  Similarity=0.127  Sum_probs=34.5

Q ss_pred             EEEEEecCcCCchhHHHHHHHHHhcc---------------cceEEEecchhhHHHHH
Q psy4713           6 LILLFSGKRKSGKDFLTDYLLERIGS---------------QHCAIIRLSAPIKSHWA   48 (103)
Q Consensus         6 lIiL~sGKrksGKDy~a~~l~~~l~~---------------~~~~iv~iS~piK~~yA   48 (103)
                      .-|+|+|..|+||=.+|..+..+++.               ..|.++.+++.+.+--+
T Consensus        18 ~nIlItG~pGvGKT~LA~aLa~~l~~~l~~l~~~~~~~d~~~~~~fid~~~Ll~~L~~   75 (226)
T PHA00729         18 VSAVIFGKQGSGKTTYALKVARDVFWKLNNLSTKDDAWQYVQNSYFFELPDALEKIQD   75 (226)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHhhcccccchhhHHhcCCcEEEEEHHHHHHHHHH
Confidence            46899999999999999999998751               35788888877665544

>COG3596 Predicted GTPase [General function prediction only]

Probab=88.95  E-value=0.6  Score=38.72  Aligned_cols=72  Identities=15%  Similarity=0.081  Sum_probs=47.5

Q ss_pred             CCCeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHHHcCccHHHhcCCCCcHHH-------hHHHHHH
Q psy4713           2 TQPKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQNGLEMDKLLGATKYKEK-------YRAEMIT   74 (103)
Q Consensus         2 ~~pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~~~glDl~~LL~d~~YKE~-------~R~~mi~   74 (103)
                      ..++++||++|+.|+||-=+.|.|-.........+-.=++|..+.+..-+| + .-.|||.+==|+       ||+..+.
T Consensus        36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~-~-~l~lwDtPG~gdg~~~D~~~r~~~~d  113 (296)
T COG3596          36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDG-E-NLVLWDTPGLGDGKDKDAEHRQLYRD  113 (296)
T ss_pred             ccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccc-c-ceEEecCCCcccchhhhHHHHHHHHH
Confidence            358999999999999998877777643333333344478899988888766 2 234566543333       5555544


Q ss_pred             H
Q psy4713          75 W   75 (103)
Q Consensus        75 w   75 (103)
                      -
T Consensus       114 ~  114 (296)
T COG3596         114 Y  114 (296)
T ss_pred             H
Confidence            3

>PRK00625 shikimate kinase; Provisional

Probab=88.88  E-value=0.85  Score=33.71  Aligned_cols=37  Identities=16%  Similarity=0.188  Sum_probs=29.6

Q ss_pred             EEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHH
Q psy4713           7 ILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSH   46 (103)
Q Consensus         7 IiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~   46 (103)
                      .|+++|=+||||--++..|+++++   ...+.++.-+.+.
T Consensus         2 ~I~LiG~pGsGKTT~~k~La~~l~---~~~id~D~~I~~~   38 (173)
T PRK00625          2 QIFLCGLPTVGKTSFGKALAKFLS---LPFFDTDDLIVSN   38 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC---CCEEEhhHHHHHH
Confidence            488999999999999999999986   5566666655543

>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif

Probab=88.84  E-value=0.61  Score=34.39  Aligned_cols=40  Identities=18%  Similarity=0.151  Sum_probs=29.6

Q ss_pred             EEEEecCcCCchhHHHHHHHHHhcc--cceEEEecchhhHHH
Q psy4713           7 ILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIRLSAPIKSH   46 (103)
Q Consensus         7 IiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~iS~piK~~   46 (103)
                      =++|+|..|+||=|+|-.+...+-.  ..+..++.++-+.+-
T Consensus        49 ~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l   90 (178)
T PF01695_consen   49 NLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDEL   90 (178)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHH
T ss_pred             EEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccc
Confidence            4789999999999999999876654  566777777655443

They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.

>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional

Probab=88.73  E-value=0.38  Score=41.90  Aligned_cols=22  Identities=18%  Similarity=0.433  Sum_probs=20.5

Q ss_pred             EEEEecCcCCchhHHHHHHHHH
Q psy4713           7 ILLFSGKRKSGKDFLTDYLLER   28 (103)
Q Consensus         7 IiL~sGKrksGKDy~a~~l~~~   28 (103)
                      =|||+|++|+||+++|..++..
T Consensus       244 pVLI~GE~GTGKe~~A~~IH~~  265 (538)
T PRK15424        244 AVLIQGETGTGKELAAQAIHRE  265 (538)
T ss_pred             cEEEECCCCCCHHHHHHHHHHh
Confidence            4899999999999999999986

>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR

Probab=88.54  E-value=0.52  Score=40.81  Aligned_cols=23  Identities=17%  Similarity=0.382  Sum_probs=20.7

Q ss_pred             EEEEecCcCCchhHHHHHHHHHh
Q psy4713           7 ILLFSGKRKSGKDFLTDYLLERI   29 (103)
Q Consensus         7 IiL~sGKrksGKDy~a~~l~~~l   29 (103)
                      =|||+|++|+||..+|..++..-
T Consensus       237 pVLI~GE~GTGKe~lA~~IH~~S  259 (526)
T TIGR02329       237 TVLILGESGTGKELVAQAIHQLS  259 (526)
T ss_pred             cEEEECCCCcCHHHHHHHHHHhc
Confidence            48999999999999999999754

At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.

>TIGR00041 DTMP_kinase thymidylate kinase

Probab=88.54  E-value=0.91  Score=32.37  Aligned_cols=27  Identities=15%  Similarity=0.303  Sum_probs=24.9

Q ss_pred             eEEEEEecCcCCchhHHHHHHHHHhcc
Q psy4713           5 KLILLFSGKRKSGKDFLTDYLLERIGS   31 (103)
Q Consensus         5 klIiL~sGKrksGKDy~a~~l~~~l~~   31 (103)
                      -.+|+|.|--||||--.++.|++.|+.
T Consensus         3 g~~IvieG~~GsGKsT~~~~L~~~l~~   29 (195)
T TIGR00041         3 GMFIVIEGIDGAGKTTQANLLKKLLQE   29 (195)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            468999999999999999999999975

Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.

>CHL00181 cbbX CbbX; Provisional

Probab=88.48  E-value=0.8  Score=36.32  Aligned_cols=27  Identities=22%  Similarity=0.351  Sum_probs=23.6

Q ss_pred             CeEEEEEecCcCCchhHHHHHHHHHhc
Q psy4713           4 PKLILLFSGKRKSGKDFLTDYLLERIG   30 (103)
Q Consensus         4 pklIiL~sGKrksGKDy~a~~l~~~l~   30 (103)
                      |-+.+||+|.+|+||=++|..+...+.
T Consensus        58 ~~~~ill~G~pGtGKT~lAr~la~~~~   84 (287)
T CHL00181         58 PGLHMSFTGSPGTGKTTVALKMADILY   84 (287)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHHH
Confidence            456799999999999999999988764

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=88.33  E-value=0.51  Score=34.15  Aligned_cols=24  Identities=33%  Similarity=0.401  Sum_probs=21.7

Q ss_pred             EEEEecCcCCchhHHHHHHHHHhc
Q psy4713           7 ILLFSGKRKSGKDFLTDYLLERIG   30 (103)
Q Consensus         7 IiL~sGKrksGKDy~a~~l~~~l~   30 (103)
                      +++|+|.+||||.=+...|...++
T Consensus         4 ~i~l~G~sGsGKsTl~~~l~~~~~   27 (186)
T PRK10078          4 LIWLMGPSGSGKDSLLAALRQREQ   27 (186)
T ss_pred             EEEEECCCCCCHHHHHHHHhccCC
Confidence            688899999999999999988765

>PRK08181 transposase; Validated

Probab=88.24  E-value=1.3  Score=35.25  Aligned_cols=35  Identities=20%  Similarity=0.157  Sum_probs=26.7

Q ss_pred             EEEEecCcCCchhHHHHHHHHHhcc--cceEEEecch
Q psy4713           7 ILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIRLSA   41 (103)
Q Consensus         7 IiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~iS~   41 (103)
                      -|+|.|..|+||=+++..|...+-.  ..+..++.++
T Consensus       108 nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~  144 (269)
T PRK08181        108 NLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTD  144 (269)
T ss_pred             eEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHH
Confidence            3899999999999999999877654  3455555544

>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional

Probab=88.12  E-value=2.6  Score=35.01  Aligned_cols=40  Identities=18%  Similarity=0.262  Sum_probs=31.1

Q ss_pred             EEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHH
Q psy4713           6 LILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAK   49 (103)
Q Consensus         6 lIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~   49 (103)
                      .+|.+||.-||||-.+++.|++ +|   +.++.--.-.++.|.+
T Consensus         2 ~~IgltG~igsGKStv~~~L~~-~G---~~vidaD~i~~~l~~~   41 (395)
T PRK03333          2 LRIGLTGGIGAGKSTVAARLAE-LG---AVVVDADVLAREVVEP   41 (395)
T ss_pred             eEEEEECCCCCCHHHHHHHHHH-CC---CeEEehHHHHHHHhcC
Confidence            4699999999999999999987 44   6677766555655554

>PRK06217 hypothetical protein; Validated

Probab=88.12  E-value=0.56  Score=33.85  Aligned_cols=25  Identities=28%  Similarity=0.337  Sum_probs=22.9

Q ss_pred             EEEEecCcCCchhHHHHHHHHHhcc
Q psy4713           7 ILLFSGKRKSGKDFLTDYLLERIGS   31 (103)
Q Consensus         7 IiL~sGKrksGKDy~a~~l~~~l~~   31 (103)
                      .|+|+|-+||||--++..|.+.++-
T Consensus         3 ~I~i~G~~GsGKSTla~~L~~~l~~   27 (183)
T PRK06217          3 RIHITGASGSGTTTLGAALAERLDI   27 (183)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcCC
Confidence            3899999999999999999999863

>KOG2170|consensus

Probab=88.10  E-value=0.61  Score=39.42  Aligned_cols=64  Identities=20%  Similarity=0.380  Sum_probs=41.8

Q ss_pred             CCeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHHHcCccHHHhcCCCCcHHHhHHHHHHHHH
Q psy4713           3 QPKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQNGLEMDKLLGATKYKEKYRAEMITWSE   77 (103)
Q Consensus         3 ~pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~~~glDl~~LL~d~~YKE~~R~~mi~wge   77 (103)
                      ...|++=|-|-+|.||.|+++++++.+-..     .+-.|.=.+|-+.+.      .-+..|=|.||.++-.|-.
T Consensus       108 ~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~-----Gl~S~~V~~fvat~h------FP~~~~ie~Yk~eL~~~v~  171 (344)
T KOG2170|consen  108 RKPLVLSFHGWTGTGKNYVAEIIAENLYRG-----GLRSPFVHHFVATLH------FPHASKIEDYKEELKNRVR  171 (344)
T ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHHhc-----cccchhHHHhhhhcc------CCChHHHHHHHHHHHHHHH
Confidence            467999999999999999999999987431     122233344443222      1234556677777776643

>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional

Probab=88.07  E-value=0.57  Score=40.90  Aligned_cols=25  Identities=20%  Similarity=0.399  Sum_probs=21.8

Q ss_pred             EEEEEecCcCCchhHHHHHHHHHhc
Q psy4713           6 LILLFSGKRKSGKDFLTDYLLERIG   30 (103)
Q Consensus         6 lIiL~sGKrksGKDy~a~~l~~~l~   30 (103)
                      .=|||+|++|+||.++|..+.....
T Consensus       400 ~pVLI~GE~GTGK~~lA~~ih~~s~  424 (686)
T PRK15429        400 STVLILGETGTGKELIARAIHNLSG  424 (686)
T ss_pred             CCEEEECCCCcCHHHHHHHHHHhcC
Confidence            3489999999999999999998654

>PHA02544 44 clamp loader, small subunit; Provisional

Probab=88.03  E-value=0.92  Score=34.93  Aligned_cols=27  Identities=26%  Similarity=0.370  Sum_probs=23.9

Q ss_pred             eEEEEEecCcCCchhHHHHHHHHHhcc
Q psy4713           5 KLILLFSGKRKSGKDFLTDYLLERIGS   31 (103)
Q Consensus         5 klIiL~sGKrksGKDy~a~~l~~~l~~   31 (103)
                      +-++|++|.+|+||-.++..+...++.
T Consensus        43 ~~~lll~G~~G~GKT~la~~l~~~~~~   69 (316)
T PHA02544         43 PNMLLHSPSPGTGKTTVAKALCNEVGA   69 (316)
T ss_pred             CeEEEeeCcCCCCHHHHHHHHHHHhCc
Confidence            458899999999999999999988764

>PF12846 AAA_10: AAA-like domain

Probab=87.93  E-value=0.69  Score=34.01  Aligned_cols=40  Identities=28%  Similarity=0.382  Sum_probs=27.7

Q ss_pred             EEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHH
Q psy4713           8 LLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAK   49 (103)
Q Consensus         8 iL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~   49 (103)
                      ++|.|++||||-+.+..+...+-.....++-| ||- .+|+.
T Consensus         4 ~~i~G~tGsGKT~~~~~l~~~~~~~g~~~~i~-D~~-g~~~~   43 (304)
T PF12846_consen    4 TLILGKTGSGKTTLLKNLLEQLIRRGPRVVIF-DPK-GDYSP   43 (304)
T ss_pred             EEEECCCCCcHHHHHHHHHHHHHHcCCCEEEE-cCC-chHHH
Confidence            47889999999999999987776543444333 443 44444

>cd00984 DnaB_C DnaB helicase C terminal domain

Probab=87.89  E-value=3.8  Score=30.16  Aligned_cols=65  Identities=17%  Similarity=0.304  Sum_probs=45.9

Q ss_pred             CeEEEEEecCcCCchhHHHHHHHHHhc---ccceEEEecchhhH----HHHHHHcCccHHHhcCCCCcHHHh
Q psy4713           4 PKLILLFSGKRKSGKDFLTDYLLERIG---SQHCAIIRLSAPIK----SHWAKQNGLEMDKLLGATKYKEKY   68 (103)
Q Consensus         4 pklIiL~sGKrksGKDy~a~~l~~~l~---~~~~~iv~iS~piK----~~yA~~~glDl~~LL~d~~YKE~~   68 (103)
                      |--+++|+|.+|+||=-++..+...+.   ...+..+++-.|-.    +..|...|.|+.++.......|.+
T Consensus        12 ~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~   83 (242)
T cd00984          12 PGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEMSKEQLLQRLLASESGISLSKLRTGSLSDEDW   83 (242)
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCCCHHHHHHHHHHHhcCCCHHHHhcCCCCHHHH
Confidence            455899999999999887776655543   25777788776655    445577899999877655554433

The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.

>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP)

Probab=87.79  E-value=0.74  Score=36.03  Aligned_cols=41  Identities=27%  Similarity=0.410  Sum_probs=33.5

Q ss_pred             CCeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhh
Q psy4713           3 QPKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPI   43 (103)
Q Consensus         3 ~pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~pi   43 (103)
                      .++=+|+|+|..||||==....+.+.+......|+.|-+|.
T Consensus        78 ~~~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~  118 (264)
T cd01129          78 KPHGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPV  118 (264)
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCc
Confidence            45668999999999999888888777765566788888886

It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.

>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]

Probab=87.76  E-value=0.74  Score=38.26  Aligned_cols=36  Identities=19%  Similarity=0.285  Sum_probs=29.8

Q ss_pred             CeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchh
Q psy4713           4 PKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAP   42 (103)
Q Consensus         4 pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~p   42 (103)
                      |...+||.|..|+||.++|..+...+   ...++++++|
T Consensus       275 ~~~giLl~GpPGtGKT~lAkava~~~---~~~fi~v~~~  310 (494)
T COG0464         275 PPKGVLLYGPPGTGKTLLAKAVALES---RSRFISVKGS  310 (494)
T ss_pred             CCCeeEEECCCCCCHHHHHHHHHhhC---CCeEEEeeCH
Confidence            55589999999999999999999865   4666777666

>PRK10865 protein disaggregation chaperone; Provisional

Probab=87.45  E-value=0.79  Score=41.73  Aligned_cols=37  Identities=27%  Similarity=0.301  Sum_probs=28.0

Q ss_pred             CeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecc
Q psy4713           4 PKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLS   40 (103)
Q Consensus         4 pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS   40 (103)
                      |.-++||.|.+|+||-++|..|++.+....-..+++.
T Consensus       597 p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id  633 (857)
T PRK10865        597 PIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRID  633 (857)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEE
Confidence            4468999999999999999999998754322344443

>TIGR02655 circ_KaiC circadian clock protein KaiC

Probab=87.44  E-value=2  Score=36.29  Aligned_cols=59  Identities=17%  Similarity=0.264  Sum_probs=44.6

Q ss_pred             CeEEEEEecCcCCchhHHHHHHHHHhcc--cceEEEecchhhHHH--HHHHcCccHHHhcCCC
Q psy4713           4 PKLILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIRLSAPIKSH--WAKQNGLEMDKLLGAT   62 (103)
Q Consensus         4 pklIiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~iS~piK~~--yA~~~glDl~~LL~d~   62 (103)
                      |--++||+|.+|+||-=++-......-.  ..|..+++-++.-+.  .|+..|+|++++..++
T Consensus       262 ~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~~~~lg~~~~~~~~~g  324 (484)
T TIGR02655       262 KDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRNAYSWGIDFEEMEQQG  324 (484)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHHHHHcCCChHHHhhCC
Confidence            5568999999999999877766665422  578899998886654  4567789999875554

Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.

>PRK00889 adenylylsulfate kinase; Provisional

Probab=87.40  E-value=1.3  Score=31.33  Aligned_cols=35  Identities=17%  Similarity=0.354  Sum_probs=27.2

Q ss_pred             CeEEEEEecCcCCchhHHHHHHHHHhccc--ceEEEe
Q psy4713           4 PKLILLFSGKRKSGKDFLTDYLLERIGSQ--HCAIIR   38 (103)
Q Consensus         4 pklIiL~sGKrksGKDy~a~~l~~~l~~~--~~~iv~   38 (103)
                      +--||+|+|-+||||--++..|...+...  .+.++.
T Consensus         3 ~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id   39 (175)
T PRK00889          3 RGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLD   39 (175)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEc
Confidence            34488899999999999999999998642  344443

>TIGR00150 HI0065_YjeE ATPase, YjeE family

Probab=87.39  E-value=0.28  Score=35.54  Aligned_cols=58  Identities=16%  Similarity=0.273  Sum_probs=43.9

Q ss_pred             CCeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHH----HcCccHHHhcCC
Q psy4713           3 QPKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAK----QNGLEMDKLLGA   61 (103)
Q Consensus         3 ~pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~----~~glDl~~LL~d   61 (103)
                      .|.-||+++|..||||=-++..+.+.++- ...|-|-+-.+-.+|..    -+-.|+-||-+.
T Consensus        20 ~~~~~i~l~G~lGaGKTtl~~~l~~~lg~-~~~v~SPTf~lv~~Y~~~~~~l~H~DlYRl~~~   81 (133)
T TIGR00150        20 DFGTVVLLKGDLGAGKTTLVQGLLQGLGI-QGNVTSPTFTLVNEYNEGNLMVYHFDLYRLADP   81 (133)
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHHHHcCC-CCcccCCCeeeeeecccCCCcEEEechhhcCCh
Confidence            45678999999999999999999999874 23466667777778862    345688887543

Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.

>TIGR03499 FlhF flagellar biosynthetic protein FlhF

Probab=87.38  E-value=1.8  Score=34.08  Aligned_cols=53  Identities=19%  Similarity=0.208  Sum_probs=37.9

Q ss_pred             eEEEEEecCcCCchhHHHHHHHHHhc----ccceEEEecch----h--hHHHHHHHcCccHHH
Q psy4713           5 KLILLFSGKRKSGKDFLTDYLLERIG----SQHCAIIRLSA----P--IKSHWAKQNGLEMDK   57 (103)
Q Consensus         5 klIiL~sGKrksGKDy~a~~l~~~l~----~~~~~iv~iS~----p--iK~~yA~~~glDl~~   57 (103)
                      .-||+|.|..||||=..+..|...+.    ..++.+|.+-.    +  .-+.|+...|+++..
T Consensus       194 ~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~  256 (282)
T TIGR03499       194 GGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVKV  256 (282)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCceec
Confidence            34788889999999999999988773    35778887642    1  224577777776643

>TIGR00017 cmk cytidylate kinase

Probab=87.35  E-value=0.78  Score=34.99  Aligned_cols=26  Identities=23%  Similarity=0.519  Sum_probs=24.2

Q ss_pred             eEEEEEecCcCCchhHHHHHHHHHhc
Q psy4713           5 KLILLFSGKRKSGKDFLTDYLLERIG   30 (103)
Q Consensus         5 klIiL~sGKrksGKDy~a~~l~~~l~   30 (103)
                      +.+|.|+|.+||||--++..|+..++
T Consensus         2 ~~~i~i~G~~GsGKst~~~~la~~~~   27 (217)
T TIGR00017         2 AMIIAIDGPSGAGKSTVAKAVAEKLG   27 (217)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhC
Confidence            46899999999999999999999987

This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.

>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA

Probab=87.35  E-value=1.9  Score=38.34  Aligned_cols=61  Identities=25%  Similarity=0.391  Sum_probs=45.9

Q ss_pred             EEEecCcCCchhHHHHHHHHHhccc-------ceEEEecchhhHHHHHHHcCccHHHhcCCCCcHHHhHHHHHHHHHHHh
Q psy4713           8 LLFSGKRKSGKDFLTDYLLERIGSQ-------HCAIIRLSAPIKSHWAKQNGLEMDKLLGATKYKEKYRAEMITWSEAER   80 (103)
Q Consensus         8 iL~sGKrksGKDy~a~~l~~~l~~~-------~~~iv~iS~piK~~yA~~~glDl~~LL~d~~YKE~~R~~mi~wge~~R   80 (103)
                      +|+.|++|+||--+++.++.++.+.       .+.++++              |+..|+.-..|..++...+-.++++-+
T Consensus       206 ~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~--------------~~~~l~a~~~~~g~~e~~l~~i~~~~~  271 (731)
T TIGR02639       206 PLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSL--------------DMGSLLAGTKYRGDFEERLKAVVSEIE  271 (731)
T ss_pred             eEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEe--------------cHHHHhhhccccchHHHHHHHHHHHHh
Confidence            4678999999999999999998541       4566665              466777666677777788888887765


Q ss_pred             cc
Q psy4713          81 RK   82 (103)
Q Consensus        81 ~~   82 (103)
                      +.
T Consensus       272 ~~  273 (731)
T TIGR02639       272 KE  273 (731)
T ss_pred             cc
Confidence            43

>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []

Probab=87.31  E-value=1.2  Score=36.70  Aligned_cols=61  Identities=25%  Similarity=0.371  Sum_probs=43.0

Q ss_pred             EEEEecCcCCchhHHHHHHHHHhcc--cceEEEecchhhHHHHHHHcCccHHHhcCCCC-cHHH
Q psy4713           7 ILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIRLSAPIKSHWAKQNGLEMDKLLGATK-YKEK   67 (103)
Q Consensus         7 IiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~iS~piK~~yA~~~glDl~~LL~d~~-YKE~   67 (103)
                      |+-|.|..+|||=-++-.....+..  ..|..|---+.+=..||+..|.|+++|+-.++ +-|+
T Consensus        55 ivEi~G~~ssGKttLaL~~ia~~q~~g~~~a~ID~e~~ld~~~a~~lGvdl~rllv~~P~~~E~  118 (322)
T PF00154_consen   55 IVEIYGPESSGKTTLALHAIAEAQKQGGICAFIDAEHALDPEYAESLGVDLDRLLVVQPDTGEQ  118 (322)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHHHTT-EEEEEESSS---HHHHHHTT--GGGEEEEE-SSHHH
T ss_pred             eEEEeCCCCCchhhhHHHHHHhhhcccceeEEecCcccchhhHHHhcCccccceEEecCCcHHH
Confidence            6778899999998887777666543  56777777778888999999999999998754 4453

In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....

>PRK07952 DNA replication protein DnaC; Validated

Probab=87.30  E-value=0.96  Score=35.48  Aligned_cols=35  Identities=26%  Similarity=0.429  Sum_probs=28.2

Q ss_pred             EEEEecCcCCchhHHHHHHHHHhcc--cceEEEecch
Q psy4713           7 ILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIRLSA   41 (103)
Q Consensus         7 IiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~iS~   41 (103)
                      -++|+|+.|+||=+++-.+...+..  ..+.+++.++
T Consensus       101 ~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~  137 (244)
T PRK07952        101 SFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVAD  137 (244)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHH
Confidence            5799999999999999999998865  4555555544

>PRK14734 coaE dephospho-CoA kinase; Provisional

Probab=87.24  E-value=1.5  Score=32.69  Aligned_cols=39  Identities=23%  Similarity=0.246  Sum_probs=28.3

Q ss_pred             EEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHH
Q psy4713           6 LILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWA   48 (103)
Q Consensus         6 lIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA   48 (103)
                      .+|-+||..||||-.++..|.. +|   +.++.-..-.++.|.
T Consensus         2 ~~igitG~igsGKst~~~~l~~-~g---~~vid~D~i~~~~~~   40 (200)
T PRK14734          2 LRIGLTGGIGSGKSTVADLLSS-EG---FLIVDADQVARDIVE   40 (200)
T ss_pred             eEEEEECCCCCCHHHHHHHHHH-CC---CeEEeCcHHHHHHHh
Confidence            4799999999999999999987 44   455555444444443

>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB

Probab=87.24  E-value=0.6  Score=40.40  Aligned_cols=42  Identities=21%  Similarity=0.360  Sum_probs=33.7

Q ss_pred             CCeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhH
Q psy4713           3 QPKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIK   44 (103)
Q Consensus         3 ~pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK   44 (103)
                      .|+=+|||||..||||==....+.+.+......|+.|-+|+-
T Consensus       314 ~~~Glilv~G~tGSGKTTtl~a~l~~~~~~~~~i~tiEdpvE  355 (564)
T TIGR02538       314 KPQGMVLVTGPTGSGKTVSLYTALNILNTEEVNISTAEDPVE  355 (564)
T ss_pred             hcCCeEEEECCCCCCHHHHHHHHHHhhCCCCceEEEecCCce
Confidence            467799999999999986665566666656678999999983

This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.

>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB

Probab=87.19  E-value=0.99  Score=40.85  Aligned_cols=37  Identities=30%  Similarity=0.353  Sum_probs=28.6

Q ss_pred             CCeEEEEEecCcCCchhHHHHHHHHHhcccceEEEec
Q psy4713           3 QPKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRL   39 (103)
Q Consensus         3 ~pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~i   39 (103)
                      .|.-.+||.|.+|+||-++|..|++.+....-.+++|
T Consensus       593 ~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~  629 (852)
T TIGR03346       593 RPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRI  629 (852)
T ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEE
Confidence            3667899999999999999999999885433333333

Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.

>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot)

Probab=87.11  E-value=1.1  Score=32.99  Aligned_cols=26  Identities=27%  Similarity=0.524  Sum_probs=16.3

Q ss_pred             EEEEEecCcCCchhHHHHH--HHHHhcc
Q psy4713           6 LILLFSGKRKSGKDFLTDY--LLERIGS   31 (103)
Q Consensus         6 lIiL~sGKrksGKDy~a~~--l~~~l~~   31 (103)
                      .|.+++|+.||||-|.|-.  +...+.+
T Consensus         1 mI~~~~G~pGsGKS~~av~~~i~~~l~~   28 (193)
T PF05707_consen    1 MIYLITGKPGSGKSYYAVSYVIIPALKK   28 (193)
T ss_dssp             -EEEEE--TTSSHHHHHHHHHHH-GGGS
T ss_pred             CEEEEEcCCCCcHhHHHHHHHHHHHHhC
Confidence            3899999999999997643  4444443

Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.

>KOG3347|consensus

Probab=87.11  E-value=0.91  Score=35.26  Aligned_cols=35  Identities=31%  Similarity=0.519  Sum_probs=29.3

Q ss_pred             EEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHH
Q psy4713           8 LLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKS   45 (103)
Q Consensus         8 iL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~   45 (103)
                      |||||-.|+||-++++.+++.++   ..=+-||+-.|+
T Consensus        10 ILvtGTPG~GKstl~~~lae~~~---~~~i~isd~vkE   44 (176)
T KOG3347|consen   10 ILVTGTPGTGKSTLAERLAEKTG---LEYIEISDLVKE   44 (176)
T ss_pred             EEEeCCCCCCchhHHHHHHHHhC---CceEehhhHHhh
Confidence            68999999999999999999875   445567887765

>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU)

Probab=87.09  E-value=1.3  Score=32.76  Aligned_cols=42  Identities=24%  Similarity=0.411  Sum_probs=31.7

Q ss_pred             EEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHH
Q psy4713           7 ILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAK   49 (103)
Q Consensus         7 IiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~   49 (103)
                      |+||+|..||||--.|+.+....+ .++..+..+.|.=.++++
T Consensus         1 ~~li~G~~~sGKS~~a~~~~~~~~-~~~~y~at~~~~d~em~~   42 (169)
T cd00544           1 IILVTGGARSGKSRFAERLAAELG-GPVTYIATAEAFDDEMAE   42 (169)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhcC-CCeEEEEccCcCCHHHHH
Confidence            589999999999999999987744 456666666666444444

CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.

>PRK05057 aroK shikimate kinase I; Reviewed

Probab=87.05  E-value=0.93  Score=32.87  Aligned_cols=51  Identities=14%  Similarity=0.310  Sum_probs=35.0

Q ss_pred             CCCCeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHHHcCccHHHhc
Q psy4713           1 MTQPKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQNGLEMDKLL   59 (103)
Q Consensus         1 ~~~pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~~~glDl~~LL   59 (103)
                      |.+++ .|+|.|-+||||--++..|...++   ..++.....+.+.    +|.++.+..
T Consensus         1 ~~~~~-~I~liG~~GaGKStl~~~La~~l~---~~~vd~D~~i~~~----~g~~i~~~~   51 (172)
T PRK05057          1 MAEKR-NIFLVGPMGAGKSTIGRQLAQQLN---MEFYDSDQEIEKR----TGADIGWVF   51 (172)
T ss_pred             CCCCC-EEEEECCCCcCHHHHHHHHHHHcC---CcEEECCchHHHH----hCcCHhHHH
Confidence            44544 477889999999999999999975   4455555544433    355555543

>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional

Probab=87.02  E-value=1  Score=36.73  Aligned_cols=72  Identities=14%  Similarity=0.093  Sum_probs=47.3

Q ss_pred             CCCCeEEEEEecCcCCchhHHHHHHHHHhcc----cceEE-----EecchhhHHHHHH--HcCcc---HHHhcCCCCcHH
Q psy4713           1 MTQPKLILLFSGKRKSGKDFLTDYLLERIGS----QHCAI-----IRLSAPIKSHWAK--QNGLE---MDKLLGATKYKE   66 (103)
Q Consensus         1 ~~~pklIiL~sGKrksGKDy~a~~l~~~l~~----~~~~i-----v~iS~piK~~yA~--~~glD---l~~LL~d~~YKE   66 (103)
                      |..++ ||+|+|..+|||--+|-.|+++.++    +...|     |.-.-|++++-+.  .|.+|   .++=.+.+.|.+
T Consensus         1 ~~~~~-ii~I~GpTasGKS~LAl~LA~~~~eIIsaDS~QvYr~ldIgTaKpt~eE~~~i~Hhlid~~~p~e~~sv~~f~~   79 (300)
T PRK14729          1 MKENK-IVFIFGPTAVGKSNILFHFPKGKAEIINVDSIQVYKEFDIASCKPSKELRKHIKHHLVDFLEPIKEYNLGIFYK   79 (300)
T ss_pred             CCCCc-EEEEECCCccCHHHHHHHHHHhCCcEEeccHHHHHCCCceecCCCCHHHHcCCCeeeeeccCCCCceeHHHHHH
Confidence            66777 7899999999999999999999543    11111     3456677777653  45544   334444556666


Q ss_pred             HhHHHHH
Q psy4713          67 KYRAEMI   73 (103)
Q Consensus        67 ~~R~~mi   73 (103)
                      .-+..+-
T Consensus        80 ~a~~~i~   86 (300)
T PRK14729         80 EALKIIK   86 (300)
T ss_pred             HHHHHHH
Confidence            6655554

>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]

Probab=86.91  E-value=0.56  Score=40.64  Aligned_cols=24  Identities=17%  Similarity=0.383  Sum_probs=21.3

Q ss_pred             EEEEecCcCCchhHHHHHHHHHhc
Q psy4713           7 ILLFSGKRKSGKDFLTDYLLERIG   30 (103)
Q Consensus         7 IiL~sGKrksGKDy~a~~l~~~l~   30 (103)
                      =|||+|++|+||.-+|..++..-.
T Consensus       166 ~VLI~GESGtGKElvAr~IH~~S~  189 (464)
T COG2204         166 SVLITGESGTGKELVARAIHQASP  189 (464)
T ss_pred             CEEEECCCCCcHHHHHHHHHhhCc
Confidence            389999999999999999998754

>TIGR01007 eps_fam capsular exopolysaccharide family

Probab=86.88  E-value=1.2  Score=32.24  Aligned_cols=38  Identities=18%  Similarity=0.177  Sum_probs=31.0

Q ss_pred             CCCCeEEEEEecCcCCchhHHHHHHHHHhcc--cceEEEe
Q psy4713           1 MTQPKLILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIR   38 (103)
Q Consensus         1 ~~~pklIiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~   38 (103)
                      +.++|.|.+.|+|-|+||=.+|-.|+..+..  .++.+|-
T Consensus        14 ~~~~kvI~v~s~kgG~GKTt~a~~LA~~la~~G~rVllID   53 (204)
T TIGR01007        14 GAEIKVLLITSVKPGEGKSTTSANIAVAFAQAGYKTLLID   53 (204)
T ss_pred             cCCCcEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEe
Confidence            3568999999999999999999999998876  3455543

This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.

>CHL00081 chlI Mg-protoporyphyrin IX chelatase

Probab=86.87  E-value=0.67  Score=38.50  Aligned_cols=24  Identities=21%  Similarity=0.387  Sum_probs=21.7

Q ss_pred             EEEecCcCCchhHHHHHHHHHhcc
Q psy4713           8 LLFSGKRKSGKDFLTDYLLERIGS   31 (103)
Q Consensus         8 iL~sGKrksGKDy~a~~l~~~l~~   31 (103)
                      |||+|++|+||-+++..+...+..
T Consensus        41 vli~G~~GtGKs~~ar~~~~~l~~   64 (350)
T CHL00081         41 VMIMGDRGTGKSTTIRALVDLLPE   64 (350)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHHhh
Confidence            779999999999999999888754

>PRK05642 DNA replication initiation factor; Validated

Probab=86.85  E-value=1  Score=34.34  Aligned_cols=36  Identities=17%  Similarity=0.259  Sum_probs=26.6

Q ss_pred             EEEEEecCcCCchhHHHHHHHHHhcc--cceEEEecch
Q psy4713           6 LILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIRLSA   41 (103)
Q Consensus         6 lIiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~iS~   41 (103)
                      .-+++.|++|+||=+++..|...+..  ..|..++..+
T Consensus        46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~   83 (234)
T PRK05642         46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAE   83 (234)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHH
Confidence            45789999999999999999877653  3444454433

>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function

Probab=86.55  E-value=2.2  Score=34.21  Aligned_cols=47  Identities=19%  Similarity=0.334  Sum_probs=38.3

Q ss_pred             eEEEEEecCcCCchhHHHHHHHHHh--cc--cceEEEecchhhHHHHHHHc
Q psy4713           5 KLILLFSGKRKSGKDFLTDYLLERI--GS--QHCAIIRLSAPIKSHWAKQN   51 (103)
Q Consensus         5 klIiL~sGKrksGKDy~a~~l~~~l--~~--~~~~iv~iS~piK~~yA~~~   51 (103)
                      |-|++|+|-.||||=.++-.+...+  ..  ..+..+.-+.|+.....+..
T Consensus         1 K~v~~I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~l~~n~~l~~~l~~~l   51 (352)
T PF09848_consen    1 KQVILITGGAGTGKTVLALNLAKELQNSEEGKKVLYLCGNHPLRNKLREQL   51 (352)
T ss_pred             CeEEEEEecCCcCHHHHHHHHHHHhhccccCCceEEEEecchHHHHHHHHH
Confidence            4689999999999999999999998  32  67778888888877655533

It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].

>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB

Probab=86.49  E-value=1.2  Score=32.30  Aligned_cols=33  Identities=27%  Similarity=0.443  Sum_probs=27.2

Q ss_pred             EEEEecCcCCchhHHHHHHHHHhcc--cceEEEec
Q psy4713           7 ILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIRL   39 (103)
Q Consensus         7 IiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~i   39 (103)
                      ||.|+|.++|||=-++..|...+..  .++.++.-
T Consensus         1 vi~i~G~~gsGKTtl~~~l~~~l~~~G~~V~viK~   35 (155)
T TIGR00176         1 VLQIVGPKNSGKTTLIERLVKALKARGYRVATIKH   35 (155)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEec
Confidence            6889999999999999999998865  46666653

This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.

>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional

Probab=86.45  E-value=0.78  Score=39.51  Aligned_cols=23  Identities=22%  Similarity=0.413  Sum_probs=21.0

Q ss_pred             EEEecCcCCchhHHHHHHHHHhc
Q psy4713           8 LLFSGKRKSGKDFLTDYLLERIG   30 (103)
Q Consensus         8 iL~sGKrksGKDy~a~~l~~~l~   30 (103)
                      |||+|++|+||+.+|..++....
T Consensus       351 vli~Ge~GtGK~~~A~~ih~~s~  373 (638)
T PRK11388        351 VLLCGEEGVGKALLAQAIHNESE  373 (638)
T ss_pred             EEEECCCCcCHHHHHHHHHHhCC
Confidence            79999999999999999998754

>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]

Probab=86.43  E-value=1.3  Score=34.62  Aligned_cols=36  Identities=17%  Similarity=0.151  Sum_probs=29.0

Q ss_pred             EEEecCcCCchhHHHHHHHHHhcc--cceEEEecchhh
Q psy4713           8 LLFSGKRKSGKDFLTDYLLERIGS--QHCAIIRLSAPI   43 (103)
Q Consensus         8 iL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~iS~pi   43 (103)
                      ++|+|+.|+||-|+|-.+...+..  ..+..+.+++=+
T Consensus       108 l~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~  145 (254)
T COG1484         108 LVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLL  145 (254)
T ss_pred             EEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHH
Confidence            689999999999999999999875  456666666543

>PF13521 AAA_28: AAA domain; PDB: 1LW7_A

Probab=86.42  E-value=2.7  Score=29.38  Aligned_cols=38  Identities=18%  Similarity=0.384  Sum_probs=25.1

Q ss_pred             EEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHHHcC
Q psy4713           8 LLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQNG   52 (103)
Q Consensus         8 iL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~~~g   52 (103)
                      |+|||=.++||--+++.|+++    .+.+|  .++.+. |.+.++
T Consensus         2 I~i~G~~stGKTTL~~~L~~~----g~~~v--~E~ar~-~~~~~~   39 (163)
T PF13521_consen    2 IVITGGPSTGKTTLIEALAAR----GYPVV--PEYARE-IIEEGG   39 (163)
T ss_dssp             EEEE--TTSHHHHHHHHHHHH----T-EEE----TTHH-HHHHSS
T ss_pred             EEEECCCCCCHHHHHHHHHHc----CCeEE--eecHHH-HHHHhc
Confidence            789999999999999999998    34444  555554 555454

>TIGR03708 poly_P_AMP_trns polyphosphate:AMP phosphotransferase

Probab=86.31  E-value=1.3  Score=38.59  Aligned_cols=47  Identities=21%  Similarity=0.386  Sum_probs=43.2

Q ss_pred             CCeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHH
Q psy4713           3 QPKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAK   49 (103)
Q Consensus         3 ~pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~   49 (103)
                      +-++||+|-|=-.||||-+...+.+.+...-++|+++..|+-+|-+.
T Consensus       297 ~~~vlivfeG~DaAGKgg~I~rl~~~ldPrg~~v~~~~~Pt~~E~~~  343 (493)
T TIGR03708       297 KRSLVLVFEGWDAAGKGGAIRRVTEALDARQYRVVPIAAPTDEEKAQ  343 (493)
T ss_pred             CCCEEEEEEcccCCCCcHHHHHHHhhcCCCeeEEEeCCCcCHHHHcC
Confidence            45799999999999999999999999999999999999999988654

Members of this protein family contain a domain duplication. The characterized member from Acinetobacter johnsonii is polyphosphate:AMP phosphotransferase (PAP), which can transfer the terminal phosphate from poly(P) to AMP, yielding ADP. In the opposite direction, this enzyme can synthesize poly(P). Each domain of this protein family is homologous to polyphosphate kinase, an enzyme that can run in the forward direction to extend a polyphosphate chain with a new terminal phosphate from ATP, or in reverse to make ATP (or GTP) from ADP (or GDP).

>PRK13948 shikimate kinase; Provisional

Probab=86.09  E-value=1.8  Score=32.32  Aligned_cols=52  Identities=15%  Similarity=0.183  Sum_probs=36.4

Q ss_pred             CCCCeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHHHcCccHHHhc
Q psy4713           1 MTQPKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQNGLEMDKLL   59 (103)
Q Consensus         1 ~~~pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~~~glDl~~LL   59 (103)
                      |+.|+-.|+++|=+||||=-++..|+++++   ..+|..-.-+++.    .|..+.++.
T Consensus         6 ~~~~~~~I~LiG~~GsGKSTvg~~La~~lg---~~~iD~D~~ie~~----~g~si~~if   57 (182)
T PRK13948          6 IERPVTWVALAGFMGTGKSRIGWELSRALM---LHFIDTDRYIERV----TGKSIPEIF   57 (182)
T ss_pred             ccCCCCEEEEECCCCCCHHHHHHHHHHHcC---CCEEECCHHHHHH----HhCCHHHHH
Confidence            456667777899999999999999999986   4455555444443    344555544

>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril

Probab=86.02  E-value=0.75  Score=40.22  Aligned_cols=25  Identities=28%  Similarity=0.444  Sum_probs=22.1

Q ss_pred             EEEEecCcCCchhHHHHHHHHHhcc
Q psy4713           7 ILLFSGKRKSGKDFLTDYLLERIGS   31 (103)
Q Consensus         7 IiL~sGKrksGKDy~a~~l~~~l~~   31 (103)
                      .|+|||++||||-..+..+..-|..
T Consensus        87 ~IiisGeSGsGKTe~~k~il~~L~~  111 (689)
T PF00063_consen   87 SIIISGESGSGKTETSKLILRYLAS  111 (689)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred             ceeeccccccccccchHHHHHHHhh
Confidence            5889999999999999998888754

Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. The globular head is well conserved, some highly-conserved regions possibly relating to functional and structural domains []. The rod-like tail starts with an invariant proline residue, and contains many repeats of a 28 residue region, interrupted at 4 regularly-spaced points known as skip residues. Although the sequence of the tail is not well conserved, the chemical character is, hydrophobic, charged and skip residues occuring in a highly ordered and repeated fashion [].; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 1LKX_A 2V26_A 2BKI_A 3L9I_A 2BKH_A 2X51_A 2VB6_A 2VAS_A 1OE9_A 1W8J_A ....

>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5)

Probab=85.95  E-value=0.71  Score=30.95  Aligned_cols=55  Identities=13%  Similarity=0.067  Sum_probs=36.1

Q ss_pred             EEEecCcCCchhHHHHHHHHHhcc-------cceEEEecchhhHHHHHHHcCccHHHhcCCC
Q psy4713           8 LLFSGKRKSGKDFLTDYLLERIGS-------QHCAIIRLSAPIKSHWAKQNGLEMDKLLGAT   62 (103)
Q Consensus         8 iL~sGKrksGKDy~a~~l~~~l~~-------~~~~iv~iS~piK~~yA~~~glDl~~LL~d~   62 (103)
                      |.|.|.+|+||=.++..|.+.+.+       ..+....-.+..-..|..+.-+-+|++-.+.
T Consensus         1 I~i~G~~G~GKS~l~~~l~~~l~~~~~~~~~~~vy~~~~~~~~w~gY~~q~vvi~DD~~~~~   62 (107)
T PF00910_consen    1 IWIYGPPGIGKSTLAKELAKDLLKHIGEPTKDSVYTRNPGDKFWDGYQGQPVVIIDDFGQDN   62 (107)
T ss_pred             CEEECCCCCCHHHHHHHHHHHHHHHhccCCCCcEEeCCCccchhhccCCCcEEEEeecCccc
Confidence            578999999999999998888764       2222334444555556555555555555554

All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity

>PRK10436 hypothetical protein; Provisional

Probab=85.94  E-value=0.8  Score=39.17  Aligned_cols=42  Identities=24%  Similarity=0.422  Sum_probs=33.8

Q ss_pred             CCeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhH
Q psy4713           3 QPKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIK   44 (103)
Q Consensus         3 ~pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK   44 (103)
                      .|+=+|||||..||||==..-.+.+.+......|+.|-+|+-
T Consensus       216 ~~~GliLvtGpTGSGKTTtL~a~l~~~~~~~~~i~TiEDPvE  257 (462)
T PRK10436        216 QPQGLILVTGPTGSGKTVTLYSALQTLNTAQINICSVEDPVE  257 (462)
T ss_pred             hcCCeEEEECCCCCChHHHHHHHHHhhCCCCCEEEEecCCcc
Confidence            467799999999999987665555666656678999999984

>PRK03992 proteasome-activating nucleotidase; Provisional

Probab=85.88  E-value=1  Score=36.96  Aligned_cols=28  Identities=21%  Similarity=0.344  Sum_probs=23.8

Q ss_pred             CeEEEEEecCcCCchhHHHHHHHHHhcc
Q psy4713           4 PKLILLFSGKRKSGKDFLTDYLLERIGS   31 (103)
Q Consensus         4 pklIiL~sGKrksGKDy~a~~l~~~l~~   31 (103)
                      |..-||+.|.+|+||-.+|..+++.++.
T Consensus       164 ~p~gvLL~GppGtGKT~lAkaia~~~~~  191 (389)
T PRK03992        164 PPKGVLLYGPPGTGKTLLAKAVAHETNA  191 (389)
T ss_pred             CCCceEEECCCCCChHHHHHHHHHHhCC
Confidence            3445788999999999999999998863

>TIGR00362 DnaA chromosomal replication initiator protein DnaA

Probab=85.77  E-value=1.1  Score=36.48  Aligned_cols=36  Identities=19%  Similarity=0.200  Sum_probs=28.0

Q ss_pred             EEEEEecCcCCchhHHHHHHHHHhccc--ceEEEecch
Q psy4713           6 LILLFSGKRKSGKDFLTDYLLERIGSQ--HCAIIRLSA   41 (103)
Q Consensus         6 lIiL~sGKrksGKDy~a~~l~~~l~~~--~~~iv~iS~   41 (103)
                      ..++|+|.+|+||=+++..+...+.+.  ...++-++.
T Consensus       137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~  174 (405)
T TIGR00362       137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSS  174 (405)
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEH
Confidence            357899999999999999999888642  455655554

DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).

>PRK06921 hypothetical protein; Provisional

Probab=85.76  E-value=1.3  Score=34.83  Aligned_cols=26  Identities=19%  Similarity=0.171  Sum_probs=22.9

Q ss_pred             EEEEEecCcCCchhHHHHHHHHHhcc
Q psy4713           6 LILLFSGKRKSGKDFLTDYLLERIGS   31 (103)
Q Consensus         6 lIiL~sGKrksGKDy~a~~l~~~l~~   31 (103)
                      --++|+|..|+||=+++..+...+.+
T Consensus       118 ~~l~l~G~~G~GKThLa~aia~~l~~  143 (266)
T PRK06921        118 NSIALLGQPGSGKTHLLTAAANELMR  143 (266)
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHHhh
Confidence            45789999999999999999998764

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

Probab=85.54  E-value=1.3  Score=31.24  Aligned_cols=34  Identities=15%  Similarity=0.227  Sum_probs=26.6

Q ss_pred             EEEEEecCcCCchhHHHHHHHHHhcc--cceEEEec
Q psy4713           6 LILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIRL   39 (103)
Q Consensus         6 lIiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~i   39 (103)
                      .|++|+|+.||||-=++-.+...+.+  .++.++..
T Consensus         1 ~~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~   36 (173)
T cd03115           1 TVILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAA   36 (173)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEc
Confidence            37899999999999999998888765  34555543

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.

>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA)

Probab=85.41  E-value=1.3  Score=34.13  Aligned_cols=32  Identities=19%  Similarity=0.397  Sum_probs=26.8

Q ss_pred             EEEEecCcCCchhHHHHHHHHHhcc--cceEEEe
Q psy4713           7 ILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIR   38 (103)
Q Consensus         7 IiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~   38 (103)
                      |++|+||-|+||=.++-.+...+.+  .++.+|+
T Consensus         2 ~~~~~gkgG~GKtt~a~~la~~~a~~g~~vLlvd   35 (254)
T cd00550           2 YIFFGGKGGVGKTTISAATAVRLAEQGKKVLLVS   35 (254)
T ss_pred             EEEEECCCCchHHHHHHHHHHHHHHCCCCceEEe
Confidence            7899999999999999999988866  4555554

This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.

>PRK07261 topology modulation protein; Provisional

Probab=85.40  E-value=1  Score=32.69  Aligned_cols=24  Identities=25%  Similarity=0.286  Sum_probs=21.7

Q ss_pred             EEEecCcCCchhHHHHHHHHHhcc
Q psy4713           8 LLFSGKRKSGKDFLTDYLLERIGS   31 (103)
Q Consensus         8 iL~sGKrksGKDy~a~~l~~~l~~   31 (103)
                      |+|.|.+||||--++..|...++-
T Consensus         3 i~i~G~~GsGKSTla~~l~~~~~~   26 (171)
T PRK07261          3 IAIIGYSGSGKSTLARKLSQHYNC   26 (171)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHhCC
Confidence            789999999999999999988753

>PRK08084 DNA replication initiation factor; Provisional

Probab=85.29  E-value=1.3  Score=33.64  Aligned_cols=35  Identities=9%  Similarity=0.219  Sum_probs=26.7

Q ss_pred             EEEEecCcCCchhHHHHHHHHHhcc--cceEEEecch
Q psy4713           7 ILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIRLSA   41 (103)
Q Consensus         7 IiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~iS~   41 (103)
                      .++|+|.+||||=+++..|...+..  ..+..+..++
T Consensus        47 ~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~   83 (235)
T PRK08084         47 YIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDK   83 (235)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHH
Confidence            5789999999999999999987764  2344445443

>cd01394 radB RadB

Probab=84.98  E-value=3.8  Score=29.94  Aligned_cols=39  Identities=15%  Similarity=0.100  Sum_probs=29.2

Q ss_pred             CeEEEEEecCcCCchhHHHHHHHHHhcc--cceEEEecchh
Q psy4713           4 PKLILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIRLSAP   42 (103)
Q Consensus         4 pklIiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~iS~p   42 (103)
                      +--|++|+|.+||||=-++-.+...+..  .++..++..++
T Consensus        18 ~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e~~   58 (218)
T cd01394          18 RGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTEGL   58 (218)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECCCC
Confidence            4578999999999999998888877643  45666655443

The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=84.87  E-value=1.5  Score=28.31  Aligned_cols=25  Identities=28%  Similarity=0.365  Sum_probs=22.5

Q ss_pred             EEEEecCcCCchhHHHHHHHHHhcc
Q psy4713           7 ILLFSGKRKSGKDFLTDYLLERIGS   31 (103)
Q Consensus         7 IiL~sGKrksGKDy~a~~l~~~l~~   31 (103)
                      +.+|+|+++|||-=+-|.++-.|..
T Consensus        25 ~tli~G~nGsGKSTllDAi~~~L~~   49 (62)
T PF13555_consen   25 VTLITGPNGSGKSTLLDAIQTVLYG   49 (62)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHcC
Confidence            7999999999999999999888754

>CHL00095 clpC Clp protease ATP binding subunit

Probab=84.84  E-value=1.6  Score=39.33  Aligned_cols=54  Identities=33%  Similarity=0.460  Sum_probs=37.0

Q ss_pred             CCeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHHHcCccHHHhcCC
Q psy4713           3 QPKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQNGLEMDKLLGA   61 (103)
Q Consensus         3 ~pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~~~glDl~~LL~d   61 (103)
                      .|...+||.|.+|+||=++|..|++.+-......+++.-   .+|...|.  ..+|.++
T Consensus       537 ~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~---s~~~~~~~--~~~l~g~  590 (821)
T CHL00095        537 RPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDM---SEYMEKHT--VSKLIGS  590 (821)
T ss_pred             CCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEc---hhcccccc--HHHhcCC
Confidence            356678999999999999999999987543344555543   24555443  3455544

>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional

Probab=84.78  E-value=2  Score=32.29  Aligned_cols=34  Identities=18%  Similarity=0.223  Sum_probs=27.0

Q ss_pred             EEEEEecCcCCchhHHHHHHHHHhcc--cceEEEec
Q psy4713           6 LILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIRL   39 (103)
Q Consensus         6 lIiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~i   39 (103)
                      .|+.|+|.++|||=-+.+.+...|..  .++.+|..
T Consensus         7 ~ii~ivG~sgsGKTTLi~~li~~l~~~g~~vg~Ik~   42 (173)
T PRK10751          7 PLLAIAAWSGTGKTTLLKKLIPALCARGIRPGLIKH   42 (173)
T ss_pred             eEEEEECCCCChHHHHHHHHHHHHhhcCCeEEEEEE
Confidence            38899999999999999999999875  23445543

>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3

Probab=84.75  E-value=5.7  Score=26.93  Aligned_cols=44  Identities=16%  Similarity=0.307  Sum_probs=33.3

Q ss_pred             eEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHH
Q psy4713           5 KLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAK   49 (103)
Q Consensus         5 klIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~   49 (103)
                      .-.+||.+..||||=+++-.+..++.. ++.++-=+..|-+++..
T Consensus        25 ~~~~ll~~~tGsGKT~~~~~~~~~l~~-~~l~~~p~~~l~~Q~~~   68 (184)
T PF04851_consen   25 ERRVLLNAPTGSGKTIIALALILELAR-KVLIVAPNISLLEQWYD   68 (184)
T ss_dssp             CSEEEEEESTTSSHHHHHHHHHHHHHC-EEEEEESSHHHHHHHHH
T ss_pred             CCCEEEEECCCCCcChhhhhhhhcccc-ceeEecCHHHHHHHHHH
Confidence            456789999999999999987777765 55566555566677766

1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....

>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown

Probab=84.57  E-value=1.3  Score=32.59  Aligned_cols=23  Identities=30%  Similarity=0.336  Sum_probs=21.0

Q ss_pred             EEEecCcCCchhHHHHHHHHHhc
Q psy4713           8 LLFSGKRKSGKDFLTDYLLERIG   30 (103)
Q Consensus         8 iL~sGKrksGKDy~a~~l~~~l~   30 (103)
                      +.|-|.+||||=|.+..|.+.+.
T Consensus        26 ~~I~G~TGsGKS~~~~~ll~~l~   48 (229)
T PF01935_consen   26 IAIFGTTGSGKSNTVKVLLEELL   48 (229)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHH
Confidence            46889999999999999999987

It contains several conserved aspartates and histidines that could be metal ligands.

>PRK04195 replication factor C large subunit; Provisional

Probab=84.31  E-value=1.6  Score=36.56  Aligned_cols=28  Identities=36%  Similarity=0.472  Sum_probs=24.9

Q ss_pred             CCeEEEEEecCcCCchhHHHHHHHHHhc
Q psy4713           3 QPKLILLFSGKRKSGKDFLTDYLLERIG   30 (103)
Q Consensus         3 ~pklIiL~sGKrksGKDy~a~~l~~~l~   30 (103)
                      .|.-.+||+|.+|+||-.++..|.+.++
T Consensus        37 ~~~~~lLL~GppG~GKTtla~ala~el~   64 (482)
T PRK04195         37 KPKKALLLYGPPGVGKTSLAHALANDYG   64 (482)
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence            3456789999999999999999999986

>PRK08118 topology modulation protein; Reviewed

Probab=84.26  E-value=1.2  Score=32.24  Aligned_cols=24  Identities=29%  Similarity=0.426  Sum_probs=22.0

Q ss_pred             EEEecCcCCchhHHHHHHHHHhcc
Q psy4713           8 LLFSGKRKSGKDFLTDYLLERIGS   31 (103)
Q Consensus         8 iL~sGKrksGKDy~a~~l~~~l~~   31 (103)
                      |+|.|-+||||--+|..|.+.++-
T Consensus         4 I~I~G~~GsGKSTlak~L~~~l~~   27 (167)
T PRK08118          4 IILIGSGGSGKSTLARQLGEKLNI   27 (167)
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCC
Confidence            788999999999999999999864

>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]

Probab=84.22  E-value=1.4  Score=33.49  Aligned_cols=43  Identities=30%  Similarity=0.386  Sum_probs=33.6

Q ss_pred             eEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHH
Q psy4713           5 KLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHW   47 (103)
Q Consensus         5 klIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~y   47 (103)
                      +-.|||+|..||||==+...|...+....-+|+.|.+|.--..
T Consensus       127 ~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~~l  169 (270)
T PF00437_consen  127 RGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPELRL  169 (270)
T ss_dssp             TEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S--
T ss_pred             ceEEEEECCCccccchHHHHHhhhccccccceEEeccccceee
Confidence            5689999999999999999998887655578888888764433

These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....

>PRK08727 hypothetical protein; Validated

Probab=84.22  E-value=1.4  Score=33.40  Aligned_cols=37  Identities=27%  Similarity=0.289  Sum_probs=27.7

Q ss_pred             EEEEecCcCCchhHHHHHHHHHhcc--cceEEEecchhh
Q psy4713           7 ILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIRLSAPI   43 (103)
Q Consensus         7 IiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~iS~pi   43 (103)
                      -++|+|++|+||=+++..+...+-+  ..+..++..+..
T Consensus        43 ~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~   81 (233)
T PRK08727         43 WLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAA   81 (233)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhh
Confidence            4899999999999999998776654  345556655544

>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type

Probab=84.19  E-value=4.3  Score=32.78  Aligned_cols=87  Identities=14%  Similarity=0.075  Sum_probs=54.7

Q ss_pred             EEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHHHcCccHHHhcCCCCcHHHhHHHHHHHHHHHhccChhh
Q psy4713           7 ILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQNGLEMDKLLGATKYKEKYRAEMITWSEAERRKDNGC   86 (103)
Q Consensus         7 IiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~~~glDl~~LL~d~~YKE~~R~~mi~wge~~R~~D~g~   86 (103)
                      .|+|+|-++|||--+++.|...++.. +    ..++.++...+. +.+- ..|....|-+.-+-.+..+.+..++.|.=+
T Consensus       164 ~~~~~G~~~~gkstl~~~l~~~~~~~-~----v~E~~R~~~~~~-~~~~-~~l~~~d~~~i~~g~~~~~~~~~~~a~~ii  236 (325)
T TIGR01526       164 TVAILGGESTGKSTLVNKLAAVFNTT-S----AWEYAREYVEEK-LGGD-EALQYSDYAQIALGQQRYIDYAVRHAHKIA  236 (325)
T ss_pred             EEEEECCCCCCHHHHHHHHHHhhCCC-E----EeehhHHHHHHh-cCCC-cccCHHHHHHHHHHHHHHHHHHHhhcCCeE
Confidence            57899999999999999999988642 2    445555444443 2121 233333455566666666666666677778


Q ss_pred             hHHHHHHHHHHHHh
Q psy4713          87 FIRSAIEMAHAMKK  100 (103)
Q Consensus        87 Fcr~~~~~~~~~~~  100 (103)
                      ||..-.-...+|-+
T Consensus       237 f~D~~~~~t~~y~~  250 (325)
T TIGR01526       237 FIDTDFITTQVFAK  250 (325)
T ss_pred             EEcCChHHHHHHHH
Confidence            88754444444443

E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.

>TIGR00678 holB DNA polymerase III, delta' subunit

Probab=84.12  E-value=1.7  Score=31.17  Aligned_cols=26  Identities=27%  Similarity=0.360  Sum_probs=23.0

Q ss_pred             eEEEEEecCcCCchhHHHHHHHHHhc
Q psy4713           5 KLILLFSGKRKSGKDFLTDYLLERIG   30 (103)
Q Consensus         5 klIiL~sGKrksGKDy~a~~l~~~l~   30 (103)
                      .-.+||.|+.|+||.-++..+...+.
T Consensus        14 ~~~~L~~G~~G~gkt~~a~~~~~~l~   39 (188)
T TIGR00678        14 AHAYLFAGPEGVGKELLALALAKALL   39 (188)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHc
Confidence            34789999999999999999998874

At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.

>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring

Probab=84.06  E-value=1.7  Score=35.60  Aligned_cols=30  Identities=27%  Similarity=0.293  Sum_probs=25.6

Q ss_pred             CCCeEEEEEecCcCCchhHHHHHHHHHhcc
Q psy4713           2 TQPKLILLFSGKRKSGKDFLTDYLLERIGS   31 (103)
Q Consensus         2 ~~pklIiL~sGKrksGKDy~a~~l~~~l~~   31 (103)
                      .++.-||.|+||-|+||-.++-.|...+.+
T Consensus        28 ~~~~~ii~v~gkgG~GKSt~a~nLa~~la~   57 (329)
T cd02033          28 TKKTQIIAIYGKGGIGKSFTLANLSYMMAQ   57 (329)
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            355678888999999999999999988866

This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.

>TIGR02533 type_II_gspE general secretory pathway protein E

Probab=84.00  E-value=1  Score=38.55  Aligned_cols=41  Identities=27%  Similarity=0.438  Sum_probs=33.5

Q ss_pred             CCeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhh
Q psy4713           3 QPKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPI   43 (103)
Q Consensus         3 ~pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~pi   43 (103)
                      .|+=+|||||..||||==....+.+.+......|+.|-+|+
T Consensus       240 ~~~GlilitGptGSGKTTtL~a~L~~l~~~~~~iiTiEDpv  280 (486)
T TIGR02533       240 RPHGIILVTGPTGSGKTTTLYAALSRLNTPERNILTVEDPV  280 (486)
T ss_pred             cCCCEEEEEcCCCCCHHHHHHHHHhccCCCCCcEEEEcCCe
Confidence            45668999999999998877766677665567799999987

This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.

>PRK00149 dnaA chromosomal replication initiation protein; Reviewed

Probab=83.85  E-value=1.5  Score=36.28  Aligned_cols=35  Identities=17%  Similarity=0.214  Sum_probs=28.2

Q ss_pred             EEEEecCcCCchhHHHHHHHHHhccc--ceEEEecch
Q psy4713           7 ILLFSGKRKSGKDFLTDYLLERIGSQ--HCAIIRLSA   41 (103)
Q Consensus         7 IiL~sGKrksGKDy~a~~l~~~l~~~--~~~iv~iS~   41 (103)
                      -++|+|.+|+||=+++..+...+.+.  .+.++-++.
T Consensus       150 ~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~  186 (450)
T PRK00149        150 PLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTS  186 (450)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEH
Confidence            47899999999999999999998653  556665554

>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional

Probab=83.81  E-value=1.1  Score=37.61  Aligned_cols=27  Identities=30%  Similarity=0.375  Sum_probs=23.6

Q ss_pred             eEEEEEecCcCCchhHHHHHHHHHhcc
Q psy4713           5 KLILLFSGKRKSGKDFLTDYLLERIGS   31 (103)
Q Consensus         5 klIiL~sGKrksGKDy~a~~l~~~l~~   31 (103)
                      +--|||+|.+|+||-.+|..|+..++.
T Consensus       108 ~~~iLl~Gp~GtGKT~lAr~lA~~l~~  134 (412)
T PRK05342        108 KSNILLIGPTGSGKTLLAQTLARILDV  134 (412)
T ss_pred             CceEEEEcCCCCCHHHHHHHHHHHhCC
Confidence            445899999999999999999998853

>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae

Probab=83.63  E-value=1.3  Score=33.29  Aligned_cols=25  Identities=32%  Similarity=0.549  Sum_probs=22.4

Q ss_pred             EEEEecCcCCchhHHHHHHHHHhcc
Q psy4713           7 ILLFSGKRKSGKDFLTDYLLERIGS   31 (103)
Q Consensus         7 IiL~sGKrksGKDy~a~~l~~~l~~   31 (103)
                      ||++||-+-|||.=+|..|++++..
T Consensus         3 iI~LNG~sSSGKSsia~~Lq~~~~~   27 (174)
T PF07931_consen    3 IIILNGPSSSGKSSIARALQERLPE   27 (174)
T ss_dssp             EEEEEE-TTSSHHHHHHHHHHHSSS
T ss_pred             EEEEeCCCCCCHHHHHHHHHHhCcC
Confidence            8999999999999999999999863

Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.

>KOG0635|consensus

Probab=83.51  E-value=2.6  Score=33.28  Aligned_cols=78  Identities=22%  Similarity=0.206  Sum_probs=54.8

Q ss_pred             CCeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHHHcCccHHHhcCCCCcHHHhHHHHHH-HHHH-Hh
Q psy4713           3 QPKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQNGLEMDKLLGATKYKEKYRAEMIT-WSEA-ER   80 (103)
Q Consensus         3 ~pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~~~glDl~~LL~d~~YKE~~R~~mi~-wge~-~R   80 (103)
                      ++-.+|-+||=++|||--+|=.|...|-+......++-+.-     -.|||+     .|=.+||+.|.+=|+ -||. +-
T Consensus        29 qkGcviWiTGLSgSGKStlACaL~q~L~qrgkl~Y~LDGDN-----vRhGLN-----~DL~F~a~dR~ENIRRigeVaKL   98 (207)
T KOG0635|consen   29 QKGCVIWITGLSGSGKSTLACALSQALLQRGKLTYILDGDN-----VRHGLN-----KDLGFKAEDRNENIRRIGEVAKL   98 (207)
T ss_pred             CCCcEEEEeccCCCCchhHHHHHHHHHHhcCceEEEecCcc-----cccccc-----cccCcchhhhhhhHHHHHHHHHH
Confidence            46678999999999999999999988876444444444432     236655     677899999988775 3443 23


Q ss_pred             ccChhhhHHH
Q psy4713          81 RKDNGCFIRS   90 (103)
Q Consensus        81 ~~D~g~Fcr~   90 (103)
                      =+|.|+-|-.
T Consensus        99 FADag~icia  108 (207)
T KOG0635|consen   99 FADAGVICIA  108 (207)
T ss_pred             Hhccceeeee
Confidence            4677777653

>PF05729 NACHT: NACHT domain

Probab=83.45  E-value=1.7  Score=29.17  Aligned_cols=25  Identities=32%  Similarity=0.474  Sum_probs=21.8

Q ss_pred             EEEEecCcCCchhHHHHHHHHHhcc
Q psy4713           7 ILLFSGKRKSGKDFLTDYLLERIGS   31 (103)
Q Consensus         7 IiL~sGKrksGKDy~a~~l~~~l~~   31 (103)
                      +++|+|+.|+||=-++..|...+..
T Consensus         2 ~l~I~G~~G~GKStll~~~~~~~~~   26 (166)
T PF05729_consen    2 VLWISGEPGSGKSTLLRKLAQQLAE   26 (166)
T ss_pred             EEEEECCCCCChHHHHHHHHHHHHh
Confidence            6899999999999888888877765

>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []

Probab=83.36  E-value=1.4  Score=32.38  Aligned_cols=23  Identities=22%  Similarity=0.426  Sum_probs=19.9

Q ss_pred             EEEecCcCCchhHHHHHHHHHhc
Q psy4713           8 LLFSGKRKSGKDFLTDYLLERIG   30 (103)
Q Consensus         8 iL~sGKrksGKDy~a~~l~~~l~   30 (103)
                      |++||+.|+||=-+...+.+.+.
T Consensus         2 i~iTG~pG~GKTTll~k~i~~l~   24 (168)
T PF03266_consen    2 IFITGPPGVGKTTLLKKVIEELK   24 (168)
T ss_dssp             EEEES-TTSSHHHHHHHHHHHHH
T ss_pred             EEEECcCCCCHHHHHHHHHHHhh
Confidence            68999999999999999888884

It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.

>PLN02772 guanylate kinase

Probab=83.03  E-value=1.4  Score=37.62  Aligned_cols=26  Identities=23%  Similarity=0.374  Sum_probs=23.1

Q ss_pred             CeEEEEEecCcCCchhHHHHHHHHHh
Q psy4713           4 PKLILLFSGKRKSGKDFLTDYLLERI   29 (103)
Q Consensus         4 pklIiL~sGKrksGKDy~a~~l~~~l   29 (103)
                      .+.+|+|+|.+||||+=+.+.|.+.+
T Consensus       134 ~~k~iVlsGPSGvGKsTL~~~L~~~~  159 (398)
T PLN02772        134 AEKPIVISGPSGVGKGTLISMLMKEF  159 (398)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhhhc
Confidence            56789999999999999999998765

>PRK09183 transposase/IS protein; Provisional

Probab=83.02  E-value=1.9  Score=33.54  Aligned_cols=34  Identities=15%  Similarity=0.012  Sum_probs=24.6

Q ss_pred             EEEEEecCcCCchhHHHHHHHHHhcc--cceEEEec
Q psy4713           6 LILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIRL   39 (103)
Q Consensus         6 lIiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~i   39 (103)
                      -.++|.|.+|+||=+++..|......  ..+..++.
T Consensus       103 ~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~  138 (259)
T PRK09183        103 ENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTA  138 (259)
T ss_pred             CeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeH
Confidence            35779999999999999999665433  34444443

>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN

Probab=82.96  E-value=1.9  Score=33.27  Aligned_cols=25  Identities=16%  Similarity=0.177  Sum_probs=22.2

Q ss_pred             EEEEecCcCCchhHHHHHHHHHhcc
Q psy4713           7 ILLFSGKRKSGKDFLTDYLLERIGS   31 (103)
Q Consensus         7 IiL~sGKrksGKDy~a~~l~~~l~~   31 (103)
                      -||++|..|+||--+|..++..++.
T Consensus        23 ~vLL~G~~GtGKT~lA~~la~~lg~   47 (262)
T TIGR02640        23 PVHLRGPAGTGKTTLAMHVARKRDR   47 (262)
T ss_pred             eEEEEcCCCCCHHHHHHHHHHHhCC
Confidence            3678999999999999999998864

Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).

>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell

Probab=82.94  E-value=1.9  Score=32.20  Aligned_cols=32  Identities=19%  Similarity=0.439  Sum_probs=26.4

Q ss_pred             EEEEecCcCCchhHHHHHHHHHhcc--cceEEEe
Q psy4713           7 ILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIR   38 (103)
Q Consensus         7 IiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~   38 (103)
                      |++++||.|+||=.++-.+...+.+  .++.++.
T Consensus         1 ~~~~~g~~g~Gkt~~~~~la~~~a~~g~~~~l~~   34 (217)
T cd02035           1 VIFFTGKGGVGKTTIAAATAVRLAEEGKKVLLVS   34 (217)
T ss_pred             CEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEE
Confidence            6899999999999999999998876  3455553

This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional

Probab=82.78  E-value=3.6  Score=35.57  Aligned_cols=51  Identities=16%  Similarity=0.224  Sum_probs=35.3

Q ss_pred             CeEEEEEecCcCCchhHHHHHHHHHhcc---cceEEEecchh-------hHHHHHHHcCccH
Q psy4713           4 PKLILLFSGKRKSGKDFLTDYLLERIGS---QHCAIIRLSAP-------IKSHWAKQNGLEM   55 (103)
Q Consensus         4 pklIiL~sGKrksGKDy~a~~l~~~l~~---~~~~iv~iS~p-------iK~~yA~~~glDl   55 (103)
                      +..|++|+|..||||--.+..|+..+..   .++.++.. |+       .=+.||...|+++
T Consensus       222 ~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~-Dt~R~aA~eQLk~yAe~lgvp~  282 (432)
T PRK12724        222 QRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTT-DNYRIAAIEQLKRYADTMGMPF  282 (432)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecc-cchhhhHHHHHHHHHHhcCCCe
Confidence            4568999999999999999999976521   34554443 22       2255777777765

>TIGR02655 circ_KaiC circadian clock protein KaiC

Probab=82.72  E-value=5.5  Score=33.66  Aligned_cols=58  Identities=19%  Similarity=0.232  Sum_probs=44.0

Q ss_pred             CeEEEEEecCcCCchhHHHHHHHHH-hc--ccceEEEecchhhHHH--HHHHcCccHHHhcCC
Q psy4713           4 PKLILLFSGKRKSGKDFLTDYLLER-IG--SQHCAIIRLSAPIKSH--WAKQNGLEMDKLLGA   61 (103)
Q Consensus         4 pklIiL~sGKrksGKDy~a~~l~~~-l~--~~~~~iv~iS~piK~~--yA~~~glDl~~LL~d   61 (103)
                      +--++||+|..||||=-++..+.-. +.  ...|..|++.++..+-  .|.++|.|++.+..+
T Consensus        20 ~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~eE~~~~l~~~~~~~G~~~~~~~~~   82 (484)
T TIGR02655        20 IGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFEESPQDIIKNARSFGWDLQKLVDE   82 (484)
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCHHHHHHHHHHcCCCHHHHhhc
Confidence            4568999999999999888876433 22  2688888888777654  466889999988644

Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.

>COG2326 Uncharacterized conserved protein [Function unknown]

Probab=82.63  E-value=1.8  Score=35.54  Aligned_cols=48  Identities=19%  Similarity=0.422  Sum_probs=43.9

Q ss_pred             CCCeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHH
Q psy4713           2 TQPKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAK   49 (103)
Q Consensus         2 ~~pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~   49 (103)
                      +..++||+|-|---+|||=....+.+.|+...|+|+.|-.|+=+|=++
T Consensus        71 ~~~~vvivfEGrDAAGKgG~Ikri~~~lNPR~~rvval~aPt~~E~~q  118 (270)
T COG2326          71 TGQRVVIVFEGRDAAGKGGAIKRITEALNPRGARVVALPAPTDRERGQ  118 (270)
T ss_pred             cCCeEEEEEecccccCCCchhHHHhhhcCCceeEEeecCCCChHhhcc
Confidence            467999999999999999999999999999999999999999887554

>PRK06526 transposase; Provisional

Probab=82.57  E-value=2  Score=33.61  Aligned_cols=35  Identities=20%  Similarity=0.164  Sum_probs=25.3

Q ss_pred             EEEEecCcCCchhHHHHHHHHHhcc--cceEEEecch
Q psy4713           7 ILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIRLSA   41 (103)
Q Consensus         7 IiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~iS~   41 (103)
                      -|+|+|+.|+||=+++..+...+-.  ..+..++.++
T Consensus       100 nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~  136 (254)
T PRK06526        100 NVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQ  136 (254)
T ss_pred             eEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHH
Confidence            4799999999999999988776543  3444444443

>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA

Probab=82.47  E-value=2.1  Score=37.96  Aligned_cols=50  Identities=30%  Similarity=0.525  Sum_probs=35.0

Q ss_pred             CeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHHHcCccHHHhcCC
Q psy4713           4 PKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQNGLEMDKLLGA   61 (103)
Q Consensus         4 pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~~~glDl~~LL~d   61 (103)
                      |.-.+||.|.+|+||=++|..+++.++   +.++++..   .+|...|  ...+|.++
T Consensus       483 p~~~~lf~Gp~GvGKT~lA~~la~~l~---~~~~~~d~---se~~~~~--~~~~lig~  532 (731)
T TIGR02639       483 PVGSFLFTGPTGVGKTELAKQLAEALG---VHLERFDM---SEYMEKH--TVSRLIGA  532 (731)
T ss_pred             CceeEEEECCCCccHHHHHHHHHHHhc---CCeEEEeC---chhhhcc--cHHHHhcC
Confidence            566799999999999999999999985   44555543   2354433  23455544

>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A

Probab=82.47  E-value=2.2  Score=30.44  Aligned_cols=56  Identities=20%  Similarity=0.370  Sum_probs=35.9

Q ss_pred             EEEEecCcCCchhHHHHHHHHHhccc--ceE-EE-------ecchhhHHHHHHHcCccHHHhcCCC
Q psy4713           7 ILLFSGKRKSGKDFLTDYLLERIGSQ--HCA-II-------RLSAPIKSHWAKQNGLEMDKLLGAT   62 (103)
Q Consensus         7 IiL~sGKrksGKDy~a~~l~~~l~~~--~~~-iv-------~iS~piK~~yA~~~glDl~~LL~d~   62 (103)
                      ||.|.|.++|||=-++..|.+.|.+.  ++. +.       .++-|=+.-|.-+.|++.--+..+.
T Consensus         2 vv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~~ik~~~~g~~~~d~pG~Dt~r~~aGA~~~~~~~~~   67 (140)
T PF03205_consen    2 VVQVVGPKNSGKTTLIRKLINELKRRGYRVAVIKHTDHGQFEIDPPGTDTWRFKAGADVVLVSSDE   67 (140)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEE-STTSTTCSTTCHHHHHHHCT-SEEEEECSS
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHhHcCCceEEEEEccCCCcccCCCCcccccccccceEEEEEcCC
Confidence            78999999999999999999999863  333 22       2334445333335566655444444

>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=82.46  E-value=3.1  Score=33.37  Aligned_cols=40  Identities=15%  Similarity=0.233  Sum_probs=29.0

Q ss_pred             CCeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchh
Q psy4713           3 QPKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAP   42 (103)
Q Consensus         3 ~pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~p   42 (103)
                      .|..=++++|++||||=.+-......--.....|+-|..+
T Consensus        21 ~~~~r~vL~G~~GsGKS~~L~q~~~~A~~~~wiVl~vp~a   60 (309)
T PF10236_consen   21 SKNNRYVLTGERGSGKSVLLAQAVHYARENGWIVLYVPSA   60 (309)
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHHHhCCEEEEEcCCH
Confidence            4566788999999999988777666544456666666555

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).

>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes

Probab=82.26  E-value=2.7  Score=30.74  Aligned_cols=56  Identities=23%  Similarity=0.361  Sum_probs=37.0

Q ss_pred             EEEEecCcCCchhHHHHHHHHHhcc--cceEEEecc-------hhhHHHH-HHHcCccHHHhcCCC
Q psy4713           7 ILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIRLS-------APIKSHW-AKQNGLEMDKLLGAT   62 (103)
Q Consensus         7 IiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~iS-------~piK~~y-A~~~glDl~~LL~d~   62 (103)
                      ||.|+|.++|||--+++.|...+..  .++.++...       .|-+.-| -.+.|++..-+.+++
T Consensus         3 vi~i~G~~gsGKTTli~~L~~~l~~~g~~V~~iK~~~~~~~~d~~g~Ds~~~~~aGa~~v~~~~~~   68 (159)
T cd03116           3 VIGFVGYSGSGKTTLLEKLIPALSARGLRVAVIKHDHHDFDIDTPGKDSYRHREAGAEEVLVSSPR   68 (159)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEecCCcccccCccchHHHHHHcCCCEEEEecCC
Confidence            7899999999999999999999875  345555431       2222222 223566665555554

In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.

>PRK09825 idnK D-gluconate kinase; Provisional

Probab=82.20  E-value=1.7  Score=31.78  Aligned_cols=25  Identities=16%  Similarity=0.291  Sum_probs=22.4

Q ss_pred             EEEEecCcCCchhHHHHHHHHHhcc
Q psy4713           7 ILLFSGKRKSGKDFLTDYLLERIGS   31 (103)
Q Consensus         7 IiL~sGKrksGKDy~a~~l~~~l~~   31 (103)
                      +++++|.+||||-.++..+...++.
T Consensus         5 ~i~l~G~sGsGKSTl~~~la~~l~~   29 (176)
T PRK09825          5 SYILMGVSGSGKSLIGSKIAALFSA   29 (176)
T ss_pred             EEEEECCCCCCHHHHHHHHHHhcCC
Confidence            6788999999999999999998764

>CHL00095 clpC Clp protease ATP binding subunit

Probab=82.14  E-value=4.7  Score=36.40  Aligned_cols=64  Identities=22%  Similarity=0.372  Sum_probs=47.1

Q ss_pred             EEEEecCcCCchhHHHHHHHHHhccc-------ceEEEecchhhHHHHHHHcCccHHHhcCCCCcHHHhHHHHHHHHHHH
Q psy4713           7 ILLFSGKRKSGKDFLTDYLLERIGSQ-------HCAIIRLSAPIKSHWAKQNGLEMDKLLGATKYKEKYRAEMITWSEAE   79 (103)
Q Consensus         7 IiL~sGKrksGKDy~a~~l~~~l~~~-------~~~iv~iS~piK~~yA~~~glDl~~LL~d~~YKE~~R~~mi~wge~~   79 (103)
                      =+|+.|++|+||--+++.|+.++...       .+.++++              |+..|+.-..|..++...+-...++-
T Consensus       202 n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l--------------~~~~l~ag~~~~ge~e~rl~~i~~~~  267 (821)
T CHL00095        202 NPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITL--------------DIGLLLAGTKYRGEFEERLKRIFDEI  267 (821)
T ss_pred             CeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEe--------------eHHHHhccCCCccHHHHHHHHHHHHH
Confidence            35789999999999999999998641       3455544              66677777777777777777777776


Q ss_pred             hccCh
Q psy4713          80 RRKDN   84 (103)
Q Consensus        80 R~~D~   84 (103)
                      ++..+
T Consensus       268 ~~~~~  272 (821)
T CHL00095        268 QENNN  272 (821)
T ss_pred             HhcCC
Confidence            55433

>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional

Probab=82.03  E-value=2  Score=35.93  Aligned_cols=35  Identities=23%  Similarity=0.363  Sum_probs=26.5

Q ss_pred             CeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecch
Q psy4713           4 PKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSA   41 (103)
Q Consensus         4 pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~   41 (103)
                      |.--+|+.|.+|+||-.++..++..++   +..+++++
T Consensus       178 ~pkgvLL~GppGTGKT~LAkalA~~l~---~~fi~i~~  212 (398)
T PTZ00454        178 PPRGVLLYGPPGTGKTMLAKAVAHHTT---ATFIRVVG  212 (398)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHhcC---CCEEEEeh
Confidence            344577889999999999999998875   34455543

>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional

Probab=82.00  E-value=4.5  Score=32.88  Aligned_cols=37  Identities=22%  Similarity=0.271  Sum_probs=29.3

Q ss_pred             CCCeEEEEEecCcCCchhHHHHHHHHHhcc-cceEEEe
Q psy4713           2 TQPKLILLFSGKRKSGKDFLTDYLLERIGS-QHCAIIR   38 (103)
Q Consensus         2 ~~pklIiL~sGKrksGKDy~a~~l~~~l~~-~~~~iv~   38 (103)
                      .-...||-|+|.++|||=-+++.|...|.+ .++.++.
T Consensus         2 ~~~~~~i~i~G~~gsGKTTl~~~l~~~l~~~~~V~~ik   39 (369)
T PRK14490          2 LFHPFEIAFCGYSGSGKTTLITALVRRLSERFSVGYYK   39 (369)
T ss_pred             CCCCEEEEEEeCCCCCHHHHHHHHHHHHhhCceEEEEE
Confidence            345679999999999999999999999976 3444443

>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed

Probab=82.00  E-value=1.6  Score=34.42  Aligned_cols=26  Identities=23%  Similarity=0.339  Sum_probs=23.2

Q ss_pred             EEEEEecCcCCchhHHHHHHHHHhcc
Q psy4713           6 LILLFSGKRKSGKDFLTDYLLERIGS   31 (103)
Q Consensus         6 lIiL~sGKrksGKDy~a~~l~~~l~~   31 (103)
                      -.+||+|.+|+||=.++..+++.++.
T Consensus        52 ~~~ll~GppG~GKT~la~~ia~~l~~   77 (328)
T PRK00080         52 DHVLLYGPPGLGKTTLANIIANEMGV   77 (328)
T ss_pred             CcEEEECCCCccHHHHHHHHHHHhCC
Confidence            35789999999999999999999874

>PRK12402 replication factor C small subunit 2; Reviewed

Probab=81.95  E-value=1.6  Score=33.45  Aligned_cols=24  Identities=29%  Similarity=0.295  Sum_probs=21.5

Q ss_pred             EEEecCcCCchhHHHHHHHHHhcc
Q psy4713           8 LLFSGKRKSGKDFLTDYLLERIGS   31 (103)
Q Consensus         8 iL~sGKrksGKDy~a~~l~~~l~~   31 (103)
                      +||+|.+|+||=.++..+...+..
T Consensus        39 lll~Gp~GtGKT~la~~~~~~l~~   62 (337)
T PRK12402         39 LLVQGPPGSGKTAAVRALARELYG   62 (337)
T ss_pred             EEEECCCCCCHHHHHHHHHHHhcC
Confidence            679999999999999999988753

>TIGR00750 lao LAO/AO transport system ATPase

Probab=81.83  E-value=3.1  Score=32.83  Aligned_cols=38  Identities=18%  Similarity=0.179  Sum_probs=29.6

Q ss_pred             CCeEEEEEecCcCCchhHHHHHHHHHhcc--cceEEEecc
Q psy4713           3 QPKLILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIRLS   40 (103)
Q Consensus         3 ~pklIiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~iS   40 (103)
                      .+..+|.|+|..||||=-++..+...+..  .++.++.+-
T Consensus        32 ~~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D   71 (300)
T TIGR00750        32 GNAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVD   71 (300)
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecC
Confidence            35667888899999999999999888765  456666644

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=81.73  E-value=2.2  Score=34.88  Aligned_cols=33  Identities=21%  Similarity=0.411  Sum_probs=26.5

Q ss_pred             EEEEecCcCCchhHHHHHHHHHhcccceEEEec
Q psy4713           7 ILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRL   39 (103)
Q Consensus         7 IiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~i   39 (103)
                      .|+|||-.||||-=.|..|++.|.+..-+++.+
T Consensus         3 LiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l   35 (261)
T COG4088           3 LIILTGYPGSGKTTFAKELAKELRQEIWRVIHL   35 (261)
T ss_pred             eEEEecCCCCCchHHHHHHHHHHHHhhhhcccc
Confidence            578999999999999999999998744444433

>PRK13886 conjugal transfer protein TraL; Provisional

Probab=81.72  E-value=1.9  Score=34.23  Aligned_cols=41  Identities=24%  Similarity=0.437  Sum_probs=30.7

Q ss_pred             CeEEEEEecCcCCchhHHHHHHHHHhcc--cceEEEecchhhHH
Q psy4713           4 PKLILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIRLSAPIKS   45 (103)
Q Consensus         4 pklIiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~iS~piK~   45 (103)
                      ++++++.+||-|+||-.+|-.|+..+..  ..+.++- .||...
T Consensus         2 ~~i~~i~~~KGGvGKSt~a~~la~~l~~~g~~vl~iD-~D~~n~   44 (241)
T PRK13886          2 AKIHMVLQGKGGVGKSFIAATIAQYKASKGQKPLCID-TDPVNA   44 (241)
T ss_pred             CeEEEEecCCCCCcHHHHHHHHHHHHHhCCCCEEEEE-CCCCCc
Confidence            5789999999999999999999988865  3444443 345443

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=81.72  E-value=1.7  Score=32.35  Aligned_cols=23  Identities=30%  Similarity=0.551  Sum_probs=21.1

Q ss_pred             EEEecCcCCchhHHHHHHHHHhc
Q psy4713           8 LLFSGKRKSGKDFLTDYLLERIG   30 (103)
Q Consensus         8 iL~sGKrksGKDy~a~~l~~~l~   30 (103)
                      |+|-|-+||||.-.|..|++.++
T Consensus         3 iiilG~pGaGK~T~A~~La~~~~   25 (178)
T COG0563           3 ILILGPPGAGKSTLAKKLAKKLG   25 (178)
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC
Confidence            67889999999999999999964

>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit

Probab=81.69  E-value=1.7  Score=33.31  Aligned_cols=25  Identities=28%  Similarity=0.410  Sum_probs=22.6

Q ss_pred             EEEEecCcCCchhHHHHHHHHHhcc
Q psy4713           7 ILLFSGKRKSGKDFLTDYLLERIGS   31 (103)
Q Consensus         7 IiL~sGKrksGKDy~a~~l~~~l~~   31 (103)
                      .++|+|.+|+||=.++..+.+.++.
T Consensus        32 ~~ll~Gp~G~GKT~la~~ia~~~~~   56 (305)
T TIGR00635        32 HLLLYGPPGLGKTTLAHIIANEMGV   56 (305)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhCC
Confidence            3688999999999999999999874

RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.

>TIGR01968 minD_bact septum site-determining protein MinD

Probab=81.69  E-value=2.9  Score=30.65  Aligned_cols=35  Identities=26%  Similarity=0.362  Sum_probs=28.6

Q ss_pred             CeEEEEEecCcCCchhHHHHHHHHHhcc--cceEEEe
Q psy4713           4 PKLILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIR   38 (103)
Q Consensus         4 pklIiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~   38 (103)
                      .++|.++|+|-|+||--+|-.|+..+.+  .++.+|-
T Consensus         1 ~~ii~v~s~kGGvGKTt~a~~lA~~la~~g~~vlliD   37 (261)
T TIGR01968         1 ARVIVITSGKGGVGKTTTTANLGTALARLGKKVVLID   37 (261)
T ss_pred             CeEEEEecCCCCccHHHHHHHHHHHHHHcCCeEEEEE
Confidence            4789999999999999999999988865  3455554

This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.

>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria

Probab=81.50  E-value=2.2  Score=31.56  Aligned_cols=22  Identities=32%  Similarity=0.360  Sum_probs=19.4

Q ss_pred             EEEEecCcCCchhHHHHHHHHH
Q psy4713           7 ILLFSGKRKSGKDFLTDYLLER   28 (103)
Q Consensus         7 IiL~sGKrksGKDy~a~~l~~~   28 (103)
                      -|||+|++||||-=+|..|.++
T Consensus        16 gvLi~G~sG~GKStlal~L~~~   37 (149)
T cd01918          16 GVLITGPSGIGKSELALELIKR   37 (149)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHc
Confidence            5899999999999888887776

It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.

>cd00046 DEXDc DEAD-like helicases superfamily

Probab=81.49  E-value=6.9  Score=24.37  Aligned_cols=43  Identities=12%  Similarity=0.142  Sum_probs=32.2

Q ss_pred             EEEEecCcCCchhHHHHHHHHHhcc----cceEEEecchhhHHHHHH
Q psy4713           7 ILLFSGKRKSGKDFLTDYLLERIGS----QHCAIIRLSAPIKSHWAK   49 (103)
Q Consensus         7 IiL~sGKrksGKDy~a~~l~~~l~~----~~~~iv~iS~piK~~yA~   49 (103)
                      .++++|..|+||=+++-.+...+..    ..+.++.-+..+-++...
T Consensus         2 ~~~i~~~~G~GKT~~~~~~~~~~~~~~~~~~~lv~~p~~~l~~~~~~   48 (144)
T cd00046           2 DVLLAAPTGSGKTLAALLPILELLDSLKGGQVLVLAPTRELANQVAE   48 (144)
T ss_pred             CEEEECCCCCchhHHHHHHHHHHHhcccCCCEEEEcCcHHHHHHHHH
Confidence            3689999999999988888777753    566677666666666554

A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.

>PRK09361 radB DNA repair and recombination protein RadB; Provisional

Probab=81.45  E-value=5  Score=29.53  Aligned_cols=37  Identities=19%  Similarity=0.099  Sum_probs=25.8

Q ss_pred             CeEEEEEecCcCCchhHHHHHHHHHhcc--cceEEEecc
Q psy4713           4 PKLILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIRLS   40 (103)
Q Consensus         4 pklIiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~iS   40 (103)
                      +--|++|+|.+|+||=-++-.+...+..  .+|..+..-
T Consensus        22 ~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e   60 (225)
T PRK09361         22 RGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE   60 (225)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence            3568999999999997666666554422  456666665

>PRK06835 DNA replication protein DnaC; Validated

Probab=81.38  E-value=2.3  Score=34.70  Aligned_cols=36  Identities=22%  Similarity=0.350  Sum_probs=27.1

Q ss_pred             EEEEEecCcCCchhHHHHHHHHHhccc--ceEEEecch
Q psy4713           6 LILLFSGKRKSGKDFLTDYLLERIGSQ--HCAIIRLSA   41 (103)
Q Consensus         6 lIiL~sGKrksGKDy~a~~l~~~l~~~--~~~iv~iS~   41 (103)
                      --++|.|..|+||=|++..+...+...  .+..++.++
T Consensus       184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~  221 (329)
T PRK06835        184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADE  221 (329)
T ss_pred             CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHH
Confidence            458999999999999999999988653  344444433

>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional

Probab=81.33  E-value=1.6  Score=38.08  Aligned_cols=27  Identities=22%  Similarity=0.428  Sum_probs=25.1

Q ss_pred             CeEEEEEecCcCCchhHHHHHHHHHhc
Q psy4713           4 PKLILLFSGKRKSGKDFLTDYLLERIG   30 (103)
Q Consensus         4 pklIiL~sGKrksGKDy~a~~l~~~l~   30 (103)
                      +..||.|.|.+||||--++..|++.|+
T Consensus       283 ~~~ii~i~G~sgsGKst~a~~la~~l~  309 (512)
T PRK13477        283 RQPIIAIDGPAGAGKSTVTRAVAKKLG  309 (512)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence            557899999999999999999999996

>PRK06893 DNA replication initiation factor; Validated

Probab=81.33  E-value=2.4  Score=32.02  Aligned_cols=34  Identities=24%  Similarity=0.255  Sum_probs=27.1

Q ss_pred             EEEEecCcCCchhHHHHHHHHHhcc--cceEEEecc
Q psy4713           7 ILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIRLS   40 (103)
Q Consensus         7 IiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~iS   40 (103)
                      .+++.|++|+||=.++..|...+..  ..+..++.+
T Consensus        41 ~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~   76 (229)
T PRK06893         41 FFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLS   76 (229)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHH
Confidence            4789999999999999999988744  455666664

>TIGR02236 recomb_radA DNA repair and recombination protein RadA

Probab=81.25  E-value=7.1  Score=30.48  Aligned_cols=57  Identities=21%  Similarity=0.235  Sum_probs=38.2

Q ss_pred             CeEEEEEecCcCCchhHHHHHHHHHhc--------ccceEEEecch--hhHH--HHHHHcCccHHHhcC
Q psy4713           4 PKLILLFSGKRKSGKDFLTDYLLERIG--------SQHCAIIRLSA--PIKS--HWAKQNGLEMDKLLG   60 (103)
Q Consensus         4 pklIiL~sGKrksGKDy~a~~l~~~l~--------~~~~~iv~iS~--piK~--~yA~~~glDl~~LL~   60 (103)
                      +.-|++|+|.+||||==++-.+.-...        ...|.-|..-+  +.++  +++...|+|.++++.
T Consensus        94 ~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~~~~~~~gl~~~~~~~  162 (310)
T TIGR02236        94 TQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIMQMAEARGLDPDEVLK  162 (310)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHHHHHHHcCCCHHHHhh
Confidence            356889999999999877776654421        13555556555  3443  567788998877543

This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.

>PRK13695 putative NTPase; Provisional

Probab=81.20  E-value=2.2  Score=30.36  Aligned_cols=24  Identities=21%  Similarity=0.169  Sum_probs=21.1

Q ss_pred             EEEEecCcCCchhHHHHHHHHHhc
Q psy4713           7 ILLFSGKRKSGKDFLTDYLLERIG   30 (103)
Q Consensus         7 IiL~sGKrksGKDy~a~~l~~~l~   30 (103)
                      .|+|||..||||.-+...+...+.
T Consensus         2 ~i~ltG~~G~GKTTll~~i~~~l~   25 (174)
T PRK13695          2 KIGITGPPGVGKTTLVLKIAELLK   25 (174)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            588999999999999999877764

>TIGR01613 primase_Cterm phage/plasmid primase, P4 family, C-terminal domain

Probab=81.18  E-value=2  Score=33.74  Aligned_cols=32  Identities=16%  Similarity=0.339  Sum_probs=27.1

Q ss_pred             CeEEEEEecCcCCchhHHHHHHHHHhcccceE
Q psy4713           4 PKLILLFSGKRKSGKDFLTDYLLERIGSQHCA   35 (103)
Q Consensus         4 pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~   35 (103)
                      .+.++++.|..++||.-+.+++...+|+..+.
T Consensus        75 ~~~~~~l~G~g~nGKStl~~~l~~l~G~~~~~  106 (304)
T TIGR01613        75 EQKLFFLYGNGGNGKSTFQNLLSNLLGDYATT  106 (304)
T ss_pred             ceEEEEEECCCCCcHHHHHHHHHHHhChhhcc
Confidence            35567788999999999999999999986643

This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus.

>TIGR02902 spore_lonB ATP-dependent protease LonB

Probab=81.15  E-value=1.5  Score=37.78  Aligned_cols=21  Identities=24%  Similarity=0.368  Sum_probs=18.8

Q ss_pred             EEEecCcCCchhHHHHHHHHH
Q psy4713           8 LLFSGKRKSGKDFLTDYLLER   28 (103)
Q Consensus         8 iL~sGKrksGKDy~a~~l~~~   28 (103)
                      |||+|++|+||..+|..+.+.
T Consensus        89 vLi~Ge~GtGKt~lAr~i~~~  109 (531)
T TIGR02902        89 VIIYGPPGVGKTAAARLVLEE  109 (531)
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            578999999999999999764

Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.

>PRK14529 adenylate kinase; Provisional

Probab=81.13  E-value=1.4  Score=34.30  Aligned_cols=36  Identities=25%  Similarity=0.285  Sum_probs=27.0

Q ss_pred             EEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHH
Q psy4713           8 LLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSH   46 (103)
Q Consensus         8 iL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~   46 (103)
                      |+|.|..||||.-.+..|++.++-   ..++..+-++++
T Consensus         3 I~l~G~PGsGK~T~a~~La~~~~~---~~is~gdllr~~   38 (223)
T PRK14529          3 ILIFGPNGSGKGTQGALVKKKYDL---AHIESGAIFREH   38 (223)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHCC---CCcccchhhhhh
Confidence            677999999999999999999863   334444444443

>TIGR02881 spore_V_K stage V sporulation protein K

Probab=81.03  E-value=1.8  Score=33.07  Aligned_cols=25  Identities=24%  Similarity=0.387  Sum_probs=22.1

Q ss_pred             EEEEEecCcCCchhHHHHHHHHHhc
Q psy4713           6 LILLFSGKRKSGKDFLTDYLLERIG   30 (103)
Q Consensus         6 lIiL~sGKrksGKDy~a~~l~~~l~   30 (103)
                      .-+||.|.+|+||=.+|..+.+.+.
T Consensus        43 ~~vll~GppGtGKTtlA~~ia~~l~   67 (261)
T TIGR02881        43 LHMIFKGNPGTGKTTVARILGKLFK   67 (261)
T ss_pred             ceEEEEcCCCCCHHHHHHHHHHHHH
Confidence            4578999999999999999998764

Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.

>PRK05973 replicative DNA helicase; Provisional

Probab=81.00  E-value=6.3  Score=31.02  Aligned_cols=55  Identities=16%  Similarity=0.195  Sum_probs=39.9

Q ss_pred             CeEEEEEecCcCCchhHHHHHHHHHh-cc-cceEEEecchhhHHHHH--HHcCccHHHh
Q psy4713           4 PKLILLFSGKRKSGKDFLTDYLLERI-GS-QHCAIIRLSAPIKSHWA--KQNGLEMDKL   58 (103)
Q Consensus         4 pklIiL~sGKrksGKDy~a~~l~~~l-~~-~~~~iv~iS~piK~~yA--~~~glDl~~L   58 (103)
                      |--++||+|..|+||=-++-.+.... .. ..+..+++.++-.+...  .+.|.|.+++
T Consensus        63 ~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlEes~~~i~~R~~s~g~d~~~~  121 (237)
T PRK05973         63 PGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLEYTEQDVRDRLRALGADRAQF  121 (237)
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHHHHcCCChHHh
Confidence            55689999999999987776654433 22 56888999887554433  4678988876

>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated

Probab=80.99  E-value=1.9  Score=37.69  Aligned_cols=28  Identities=18%  Similarity=0.401  Sum_probs=25.1

Q ss_pred             CeEEEEEecCcCCchhHHHHHHHHHhcc
Q psy4713           4 PKLILLFSGKRKSGKDFLTDYLLERIGS   31 (103)
Q Consensus         4 pklIiL~sGKrksGKDy~a~~l~~~l~~   31 (103)
                      +..+|+|+|-+||||--++..|..+|+.
T Consensus       391 ~g~~Ivl~Gl~GSGKSTia~~La~~L~~  418 (568)
T PRK05537        391 QGFTVFFTGLSGAGKSTIAKALMVKLME  418 (568)
T ss_pred             CCeEEEEECCCCChHHHHHHHHHHHhhh
Confidence            4567888999999999999999999985

>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional

Probab=80.96  E-value=3.1  Score=33.90  Aligned_cols=32  Identities=22%  Similarity=0.324  Sum_probs=28.0

Q ss_pred             EEEEecCcCCchhHHHHHHHHHhcc--cceEEEe
Q psy4713           7 ILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIR   38 (103)
Q Consensus         7 IiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~   38 (103)
                      ||-|+|.++|||=-+.+.|...|.+  .++.+|.
T Consensus       207 ~~~~~g~~~~GKtt~~~~l~~~l~~~g~~v~~iK  240 (366)
T PRK14489        207 LLGVVGYSGTGKTTLLEKLIPELIARGYRIGLIK  240 (366)
T ss_pred             EEEEecCCCCCHHHHHHHHHHHHHHcCCEEEEEE
Confidence            8999999999999999999999976  4566666

>PRK14953 DNA polymerase III subunits gamma and tau; Provisional

Probab=80.90  E-value=2.2  Score=36.62  Aligned_cols=26  Identities=23%  Similarity=0.445  Sum_probs=23.2

Q ss_pred             eEEEEEecCcCCchhHHHHHHHHHhc
Q psy4713           5 KLILLFSGKRKSGKDFLTDYLLERIG   30 (103)
Q Consensus         5 klIiL~sGKrksGKDy~a~~l~~~l~   30 (103)
                      .-.+||+|.+|+||-.+|.+++..+.
T Consensus        38 ~hayLf~Gp~G~GKTtlAr~lAk~L~   63 (486)
T PRK14953         38 SHAYIFAGPRGTGKTTIARILAKVLN   63 (486)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhc
Confidence            44689999999999999999999885

>PF01591 6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR013079 6-Phosphofructo-2-kinase (2

Probab=80.62  E-value=3  Score=32.53  Aligned_cols=71  Identities=13%  Similarity=0.246  Sum_probs=45.1

Q ss_pred             CCeEEEEEecCcCCchhHHHHHHHHHhcc--cceEEEecchhhHHHHHHHcCccHHHhcCCCCcHHHhH----------H
Q psy4713           3 QPKLILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIRLSAPIKSHWAKQNGLEMDKLLGATKYKEKYR----------A   70 (103)
Q Consensus         3 ~pklIiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~iS~piK~~yA~~~glDl~~LL~d~~YKE~~R----------~   70 (103)
                      ..|+||+.-|=...||-|+|..|..-|.-  .+|.|+..++--++.......    .-..|....|..+          .
T Consensus        10 ~~kl~ivmVGLPArGKs~ia~kl~ryL~w~g~~~~vFn~g~yRR~~~~~~~~----~~ff~p~n~~~~~~R~~~a~~~l~   85 (222)
T PF01591_consen   10 AGKLVIVMVGLPARGKSYIARKLCRYLNWLGVKTKVFNVGDYRRKLSGAPQD----AEFFDPDNEEAKKLREQIAKEALE   85 (222)
T ss_dssp             ---EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHSS-S-----GGGGSTT-HHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCcceeecccceecccccccc----cccCCCCChHHHHHHHHHHHHHHH
Confidence            46899999999999999999999977754  899999988544443333222    2235555554332          4


Q ss_pred             HHHHHHH
Q psy4713          71 EMITWSE   77 (103)
Q Consensus        71 ~mi~wge   77 (103)
                      +|+.|++
T Consensus        86 dl~~~l~   92 (222)
T PF01591_consen   86 DLIEWLQ   92 (222)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            6788887

7.1.105 from EC, 3.1.3.46 from EC) is a bifunctional enzyme that catalyses both the synthesis and the degradation of fructose-2, 6-bisphosphate. The fructose-2,6-bisphosphatase reaction involves a phosphohistidine intermediate. The catalytic pathway is: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate D-fructose 2,6-bisphosphate + H2O = 6-fructose 6-phosphate + Pi The enzyme is important in the regulation of hepatic carbohydrate metabolism and is found in greatest quantities in the liver, kidney and heart. In mammals, several genes often encode different isoforms, each of which differs in its tissue distribution and enzymatic activity []. The family described here bears a resemblance to the ATP-driven phospho-fructokinases, however, they share little sequence similarity, although a few residues seem key to their interaction with fructose 6-phosphate []. This domain forms the N-terminal region of this enzyme, while IPR013078 from INTERPRO forms the C-terminal domain.; GO: 0003873 6-phosphofructo-2-kinase activity, 0005524 ATP binding, 0006000 fructose metabolic process; PDB: 2DWO_A 3QPW_A 3QPV_A 3QPU_A 2I1V_B 2DWP_A 2AXN_A 1K6M_B 3BIF_A 2BIF_A ....

>CHL00175 minD septum-site determining protein; Validated

Probab=80.50  E-value=3.6  Score=31.37  Aligned_cols=35  Identities=31%  Similarity=0.355  Sum_probs=28.5

Q ss_pred             CCeEEEEEecCcCCchhHHHHHHHHHhcc--cceEEE
Q psy4713           3 QPKLILLFSGKRKSGKDFLTDYLLERIGS--QHCAII   37 (103)
Q Consensus         3 ~pklIiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv   37 (103)
                      ..++|.++|||-|+||=.+|-.|...|.+  .++.+|
T Consensus        14 ~~~vi~v~s~KGGvGKTt~a~nLA~~La~~g~~vlli   50 (281)
T CHL00175         14 MSRIIVITSGKGGVGKTTTTANLGMSIARLGYRVALI   50 (281)
T ss_pred             CceEEEEEcCCCCCcHHHHHHHHHHHHHhCCCeEEEE
Confidence            46799999999999999999999988876  344444

>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A

Probab=80.42  E-value=2.4  Score=29.34  Aligned_cols=26  Identities=19%  Similarity=0.270  Sum_probs=23.6

Q ss_pred             EEEEEecCcCCchhHHHHHHHHHhcc
Q psy4713           6 LILLFSGKRKSGKDFLTDYLLERIGS   31 (103)
Q Consensus         6 lIiL~sGKrksGKDy~a~~l~~~l~~   31 (103)
                      =|.+|+|.+++||=-+.+.+.-.|+.
T Consensus        20 g~~vi~G~Ng~GKStil~ai~~~L~~   45 (202)
T PF13476_consen   20 GLNVIYGPNGSGKSTILEAIRYALGG   45 (202)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHHHS
T ss_pred             CcEEEECCCCCCHHHHHHHHHHHHcC
Confidence            47899999999999999999998875

>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]

Probab=80.40  E-value=1.5  Score=37.52  Aligned_cols=22  Identities=18%  Similarity=0.394  Sum_probs=19.6

Q ss_pred             EEEEecCcCCchhHHHHHHHHH
Q psy4713           7 ILLFSGKRKSGKDFLTDYLLER   28 (103)
Q Consensus         7 IiL~sGKrksGKDy~a~~l~~~   28 (103)
                      =|||.|++|.||+++|..++..
T Consensus       103 ~vLi~GetGtGKel~A~~iH~~  124 (403)
T COG1221         103 PVLIIGETGTGKELFARLIHAL  124 (403)
T ss_pred             cEEEecCCCccHHHHHHHHHHh
Confidence            3799999999999999999943

>TIGR01818 ntrC nitrogen regulation protein NR(I)

Probab=80.19  E-value=1.9  Score=34.86  Aligned_cols=28  Identities=18%  Similarity=0.391  Sum_probs=23.5

Q ss_pred             CeEEEEEecCcCCchhHHHHHHHHHhcc
Q psy4713           4 PKLILLFSGKRKSGKDFLTDYLLERIGS   31 (103)
Q Consensus         4 pklIiL~sGKrksGKDy~a~~l~~~l~~   31 (103)
                      ....++++|+.|+||+++|..+......
T Consensus       156 ~~~~vli~Ge~GtGK~~~A~~ih~~~~~  183 (463)
T TIGR01818       156 SDITVLINGESGTGKELVARALHRHSPR  183 (463)
T ss_pred             cCCeEEEECCCCCCHHHHHHHHHHhCCC
Confidence            3456899999999999999999887553

This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.

>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A

Probab=80.11  E-value=2.4  Score=30.61  Aligned_cols=72  Identities=18%  Similarity=0.098  Sum_probs=45.0

Q ss_pred             EEEEecCcCCchhHHHHHHHHHhcccceE-EEecchhhHHHHHHHcCccHHHhcCCCC----cHHHhHHHHHHHHHHH
Q psy4713           7 ILLFSGKRKSGKDFLTDYLLERIGSQHCA-IIRLSAPIKSHWAKQNGLEMDKLLGATK----YKEKYRAEMITWSEAE   79 (103)
Q Consensus         7 IiL~sGKrksGKDy~a~~l~~~l~~~~~~-iv~iS~piK~~yA~~~glDl~~LL~d~~----YKE~~R~~mi~wge~~   79 (103)
                      .+||+|.+|+||.-+|..++..+-..... ..--.-+.-+.......-|+-.+-.++.    -+|+-| +++.|....
T Consensus        21 a~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~~i~i~~ir-~i~~~~~~~   97 (162)
T PF13177_consen   21 ALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKKSIKIDQIR-EIIEFLSLS   97 (162)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSSSBSHHHHH-HHHHHCTSS
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccchhhHHHHH-HHHHHHHHH
Confidence            57899999999999999999988541111 0111223333444444557766655544    578888 888886543

...

>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B

Probab=80.04  E-value=6.1  Score=28.92  Aligned_cols=58  Identities=21%  Similarity=0.191  Sum_probs=37.3

Q ss_pred             CeEEEEEecCcCCchhHHHHHHHHHhcc--------cceEEEecchh--hH--HHHHHHcCccHHHhcCC
Q psy4713           4 PKLILLFSGKRKSGKDFLTDYLLERIGS--------QHCAIIRLSAP--IK--SHWAKQNGLEMDKLLGA   61 (103)
Q Consensus         4 pklIiL~sGKrksGKDy~a~~l~~~l~~--------~~~~iv~iS~p--iK--~~yA~~~glDl~~LL~d   61 (103)
                      +--|+.|+|.+||||=-++..+......        ..+..+...++  .+  .+.++..|.|.+.+++.
T Consensus        18 ~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~~~~~~~~~~~~~~~~   87 (235)
T cd01123          18 TGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQIAERFGLDPEEVLDN   87 (235)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHHHHHHhccChHhHhcC
Confidence            3468899999999999999888744321        34444444442  23  24566777777766544

This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .

>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH

Probab=80.02  E-value=2.2  Score=35.86  Aligned_cols=32  Identities=22%  Similarity=0.377  Sum_probs=25.4

Q ss_pred             EEEEecCcCCchhHHHHHHHHHhcccceEEEecch
Q psy4713           7 ILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSA   41 (103)
Q Consensus         7 IiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~   41 (103)
                      =+|+.|.+|+||-+++..+...++   +.++.+|.
T Consensus        90 giLL~GppGtGKT~la~alA~~~~---~~~~~i~~  121 (495)
T TIGR01241        90 GVLLVGPPGTGKTLLAKAVAGEAG---VPFFSISG  121 (495)
T ss_pred             cEEEECCCCCCHHHHHHHHHHHcC---CCeeeccH
Confidence            378899999999999999998764   44555553

HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	103
3ch4_B	202	The Crystal Structure Of Human Phosphomavelonate Ki		2e-23

>pdb|3CH4|B Chain B, The Crystal Structure Of Human Phosphomavelonate Kinase At 1.8 A Resolution Length = 202

Iteration: 1
 Score =  103 bits (258), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 45/90 (50%), Positives = 65/90 (72%)
Query: 4  PKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQNGLEMDKLLGATK 63
          P+L+LLFSGKRKSGKDF+T+ L  R+G+  CA++RLS P+K  +A+++GL   +LL  + 
Sbjct: 10 PRLVLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSGPLKEQYAQEHGLNFQRLLDTST 69
Query: 64 YKEKYRAEMITWSEAERRKDNGCFIRSAIE 93
          YKE +R +MI W E +R+ D G F R  +E
Sbjct: 70 YKEAFRKDMIRWGEEKRQADPGFFCRKIVE 99

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	103
3ch4_B	202	Pmkase, phosphomevalonate kinase; parallel beta-sh	2e-34

>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens} Length = 202

 Score =  116 bits (291), Expect = 2e-34
 Identities = 45/93 (48%), Positives = 65/93 (69%)

Query: 4   PKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQNGLEMDKLLGATK 63
           P+L+LLFSGKRKSGKDF+T+ L  R+G+  CA++RLS P+K  +A+++GL   +LL  + 
Sbjct: 10  PRLVLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSGPLKEQYAQEHGLNFQRLLDTST 69

Query: 64  YKEKYRAEMITWSEAERRKDNGCFIRSAIEMAH 96
           YKE +R +MI W E +R+ D G F R  +E   
Sbjct: 70  YKEAFRKDMIRWGEEKRQADPGFFCRKIVEGIS 102

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	103
3ch4_B	202	Pmkase, phosphomevalonate kinase; parallel beta-sh	100.0
1dek_A	241	Deoxynucleoside monophosphate kinase; transferase,	99.4
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	97.02
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	96.82
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	96.8
3hdt_A	223	Putative kinase; structura genomics, PSI-2, protei	96.66
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	96.45
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	96.36
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	96.29
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	96.2
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	96.19
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	96.17
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	96.02
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	95.92
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	95.91
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	95.85
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	95.78
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	95.77
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	95.76
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	95.74
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	95.73
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	95.69
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	95.68
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	95.66
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	95.56
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	95.51
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	95.47
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	95.46
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	95.38
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	95.37
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	95.36
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	95.36
3fdi_A	201	Uncharacterized protein; cytidylate kinase like pr	95.27
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	95.27
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	95.26
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	95.25
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	95.18
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	95.18
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	95.17
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	95.16
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	95.12
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	94.92
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	94.92
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	94.91
1u94_A	356	RECA protein, recombinase A; homologous recombinat	94.89
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	94.88
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	94.87
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	94.76
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	94.74
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	94.71
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	94.65
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	94.62
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	94.55
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	94.52
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	94.5
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	94.5
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	94.5
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	94.4
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	94.38
1via_A	175	Shikimate kinase; structural genomics, transferase	94.26
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	94.16
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	94.09
1xp8_A	366	RECA protein, recombinase A; recombination, radior	94.09
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	94.09
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	93.97
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	93.94
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	93.93
3bos_A	242	Putative DNA replication factor; P-loop containing	93.86
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	93.83
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	93.78
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	93.68
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	93.67
2chg_A	226	Replication factor C small subunit; DNA-binding pr	93.66
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	93.65
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	93.58
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	93.57
2axn_A	520	6-phosphofructo-2-kinase/fructose-2,6- biphosphata	93.54
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	93.53
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	93.47
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	93.45
2vli_A	183	Antibiotic resistance protein; transferase, tunica	93.28
3rhf_A	289	Putative polyphosphate kinase 2 family protein; PS	93.14
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	93.11
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	93.04
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	92.92
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	92.7
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	92.65
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	92.6
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	92.59
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	92.41
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	92.33
3tmk_A	216	Thymidylate kinase; phosphotransferase; HET: T5A;	92.33
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	92.25
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	92.15
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	92.06
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	92.02
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	91.97
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	91.86
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	91.85
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	91.84
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	91.84
3io5_A	333	Recombination and repair protein; storage dimer, i	91.81
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	91.7
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	91.68
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	91.67
2qgz_A	308	Helicase loader, putative primosome component; str	91.61
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	91.55
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	91.4
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	91.39
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	91.26
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	91.24
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	91.23
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	91.22
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	91.21
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	91.2
1ojl_A	304	Transcriptional regulatory protein ZRAR; response	91.13
3co5_A	143	Putative two-component system transcriptional RES	91.11
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	91.1
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	91.09
2cvh_A	220	DNA repair and recombination protein RADB; filamen	91.04
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	90.99
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	90.97
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	90.97
2xj4_A	286	MIPZ; replication, cell division, ATPase, WACA; 1.	90.9
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	90.51
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	90.45
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	90.43
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	90.43
2chq_A	319	Replication factor C small subunit; DNA-binding pr	90.42
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	90.38
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	90.33
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	90.16
3czp_A	500	Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2	90.09
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	90.06
3bs4_A	260	Uncharacterized protein PH0321; structural genomic	90.04
2z43_A	324	DNA repair and recombination protein RADA; archaea	89.97
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	89.92
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	89.85
1hqc_A	324	RUVB; extended AAA-ATPase domain, complex with nuc	89.81
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	89.79
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	89.73
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	89.68
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	89.64
1sxj_B	323	Activator 1 37 kDa subunit; clamp loader, processi	89.59
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	89.53
1jr3_A	373	DNA polymerase III subunit gamma; processivity, pr	89.5
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	89.48
1sxj_A	516	Activator 1 95 kDa subunit; clamp loader, processi	89.38
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	89.26
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	89.25
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	89.21
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	89.18
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	89.15
3pxg_A	468	Negative regulator of genetic competence CLPC/MEC;	89.07
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	89.06
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	88.94
1g8p_A	350	Magnesium-chelatase 38 kDa subunit; parallel beta	88.8
1iqp_A	327	RFCS; clamp loader, extended AAA-ATPase domain, co	88.77
2woo_A	329	ATPase GET3; tail-anchored, membrane protein, targ	88.72
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	88.71
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	88.61
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	88.55
2i1q_A	322	DNA repair and recombination protein RADA; ATPase,	88.45
2c9o_A	456	RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-	88.38
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	88.34
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	88.3
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	88.27
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	88.2
1um8_A	376	ATP-dependent CLP protease ATP-binding subunit CL;	88.14
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	88.07
3czq_A	304	Putative polyphosphate kinase 2; structural genomi	88.0
2r2a_A	199	Uncharacterized protein; zonular occludens toxin,	87.99
3czp_A	500	Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2	87.89
2zan_A	444	Vacuolar protein sorting-associating protein 4B; S	87.52
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	87.51
2zts_A	251	Putative uncharacterized protein PH0186; KAIC like	87.48
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	87.42
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	87.3
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	87.19
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	87.1
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	86.91
2woj_A	354	ATPase GET3; tail-anchored, membrane protein, targ	86.83
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	86.82
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	86.73
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	86.67
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	86.66
3ug7_A	349	Arsenical pump-driving ATPase; tail-anchored, memb	86.5
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	86.45
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	86.45
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	86.18
4tmk_A	213	Protein (thymidylate kinase); ATP:DTMP phosphotran	86.08
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	85.93
2fna_A	357	Conserved hypothetical protein; structural genomic	85.87
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	85.85
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	85.82
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	85.79
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	85.68
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	85.44
1g8f_A	511	Sulfate adenylyltransferase; alpha-beta protein, b	85.37
2gks_A	546	Bifunctional SAT/APS kinase; transferase, sulfuryl	85.18
1a5t_A	334	Delta prime, HOLB; zinc finger, DNA replication; 2	85.18
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	85.16
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	85.04
1ihu_A	589	Arsenical pump-driving ATPase; aluminum fluoride,	84.97
3hu3_A	489	Transitional endoplasmic reticulum ATPase; VCP, tr	84.91
3iqw_A	334	Tail-anchored protein targeting factor GET3; ATPas	84.78
4b4t_H	467	26S protease regulatory subunit 7 homolog; hydrola	84.72
2qen_A	350	Walker-type ATPase; unknown function; HET: ADP; 2.	84.67
3ea0_A	245	ATPase, para family; alpha-beta-alpha sandwich, st	84.6
2r8r_A	228	Sensor protein; KDPD, PFAM02702, MCSG, structural	84.56
1g3q_A	237	MIND ATPase, cell division inhibitor; alpha-beta-a	84.25
2r44_A	331	Uncharacterized protein; putative ATPase, structur	84.19
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	84.18
1x6v_B	630	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	84.03
1m8p_A	573	Sulfate adenylyltransferase; rossmann fold, phosph	83.82
2ph1_A	262	Nucleotide-binding protein; alpha-beta protein, st	83.8
1hyq_A	263	MIND, cell division inhibitor (MIND-1); MINC, FTSZ	83.54
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	83.36
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	83.25
3zq6_A	324	Putative arsenical pump-driving ATPase; tail-ancho	83.12
3bh0_A	315	DNAB-like replicative helicase; ATPase, replicatio	83.01
2r6a_A	454	DNAB helicase, replicative helicase; replication,	82.96
3q9l_A	260	Septum site-determining protein MIND; ATPase, bact	82.84
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	82.84
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	82.69
4dzz_A	206	Plasmid partitioning protein PARF; deviant walker	82.67
2p6w_A	213	VP54, putative glycosyltransferase (mannosyltransf	82.48
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	82.4
3k9g_A	267	PF-32 protein; ssgcid, SBRI, decode biostructures,	82.32
3pvs_A	447	Replication-associated recombination protein A; ma	82.3
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	82.09
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	81.92
1ny5_A	387	Transcriptional regulator (NTRC family); AAA+ ATPa	81.8
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	81.6
3la6_A	286	Tyrosine-protein kinase WZC; P-loop protein, nucle	81.54
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	81.53
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	81.22
1w5s_A	412	Origin recognition complex subunit 2 ORC2; replica	81.08
3dzd_A	368	Transcriptional regulator (NTRC family); sigma43 a	81.01
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	80.99
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	80.9
3io3_A	348	DEHA2D07832P; chaperone, membrane traffic, ATPase;	80.68
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	80.3
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	80.21
3fkq_A	373	NTRC-like two-domain protein; RER070207001320, str	80.09

>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}

Probab=100.00  E-value=6.4e-35  Score=221.12  Aligned_cols=94  Identities=48%  Similarity=0.918  Sum_probs=82.5

Q ss_pred             CCCCeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHHHcCccHHHhcCCCCcHHHhHHHHHHHHHHHh
Q psy4713           1 MTQPKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQNGLEMDKLLGATKYKEKYRAEMITWSEAER   80 (103)
Q Consensus         1 ~~~pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~~~glDl~~LL~d~~YKE~~R~~mi~wge~~R   80 (103)
                      |..|++||+||||+||||||||++|.++++...+.+++||+|||++||+++|||+++||+|++|||+||++|+.||++.|
T Consensus         7 ~~~~~~II~itGk~~SGKd~va~~l~~~~g~~~~~vv~msD~iK~~~a~~~gl~~~~~l~~~~ykE~~R~~m~~~g~~~R   86 (202)
T 3ch4_B            7 GGAPRLVLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSGPLKEQYAQEHGLNFQRLLDTSTYKEAFRKDMIRWGEEKR   86 (202)
T ss_dssp             BCCCSEEEEEEECTTSSHHHHHHHHHHHHCTTTEEEECTHHHHHHHHHHTTTCCCC-------CCSSHHHHHHHHHHHHH
T ss_pred             ccCCCEEEEEECCCCCChHHHHHHHHHHcCCCCceEEEccHHHHHHHHHHcCCCchhhcchhhhHHHHHHHHHHHHHHHH
Confidence            45799999999999999999999999999876799999999999999999999999999999999999999999999999


Q ss_pred             ccChhhhHHHHHHH
Q psy4713          81 RKDNGCFIRSAIEM   94 (103)
Q Consensus        81 ~~D~g~Fcr~~~~~   94 (103)
                      ++||++||+.+++.
T Consensus        87 ~~d~~~~~~~~~~~  100 (202)
T 3ch4_B           87 QADPGFFCRKIVEG  100 (202)
T ss_dssp             HHCTTTTHHHHSBT
T ss_pred             hcCchHHHHHHHHh
Confidence            99999999988753

>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*

Probab=99.40  E-value=5.1e-13  Score=101.99  Aligned_cols=87  Identities=21%  Similarity=0.307  Sum_probs=73.8

Q ss_pred             EEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHHHcC----------ccHHHhcC---CC----------
Q psy4713           6 LILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQNG----------LEMDKLLG---AT----------   62 (103)
Q Consensus         6 lIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~~~g----------lDl~~LL~---d~----------   62 (103)
                      .||.+||..+|||+.+++.|.+.+|   +.++++++|+|++.++.+|          |+.+.+.+   |+          
T Consensus         2 ~~i~ltG~~~sGK~tv~~~l~~~~g---~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~g~~~dRe~~~~~~~~~   78 (241)
T 1dek_A            2 KLIFLSGVKRSGKDTTADFIMSNYS---AVKYQLAGPIKDALAYAWGVFAANTDYPCLTRKEFEGIDYDRETNLNLTKLE   78 (241)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHSC---EEECCTTHHHHHHHHHHHHHHSTTSSSCCCCHHHHTTTTSCTTSCCCCCHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhcC---CeEEecChHHHHHHHHHccccccccccccCCHhhhcccccccccccccchhH
Confidence            5899999999999999999999876   6789999999999999999          77655554   22          


Q ss_pred             --------------------Cc-------------------------HH--HhHHHHHHHHHH-Hhc-cChhhhHHHHHH
Q psy4713          63 --------------------KY-------------------------KE--KYRAEMITWSEA-ERR-KDNGCFIRSAIE   93 (103)
Q Consensus        63 --------------------~Y-------------------------KE--~~R~~mi~wge~-~R~-~D~g~Fcr~~~~   93 (103)
                                          +|                         ||  .+|..|+.||++ .|+ .+|++||+.+++
T Consensus        79 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~R~l~~~~G~d~~R~~~~~~~~~~~~~~  158 (241)
T 1dek_A           79 VITIMEQAFCYLNGKSPIKGVFVFDDEGKESVNFVAFNKITDVINNIEDQWSVRRLMQALGTDLIVNNFDRMYWVKLFAL  158 (241)
T ss_dssp             HHHHHHHHHHHHHTTSCCTTCCEEESSSCEEECHHHHHHHHHHHHTCCSCCCHHHHHHHHHTTTHHHHTCTTHHHHHHHH
T ss_pred             HHHHHHHHHHHhhcccccccccccccccccccccchhhhhhhhhhcccCCCCHHHHHHHHHHHHHHHHccchHHHHHHHH
Confidence                                22                         45  899999999995 688 999999998877


Q ss_pred             HH
Q psy4713          94 MA   95 (103)
Q Consensus        94 ~~   95 (103)
                      ..
T Consensus       159 ~i  160 (241)
T 1dek_A          159 DY  160 (241)
T ss_dssp             HH
T ss_pred             HH
Confidence            65

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=97.02  E-value=0.0011  Score=43.39  Aligned_cols=41  Identities=22%  Similarity=0.412  Sum_probs=33.7

Q ss_pred             eEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHH
Q psy4713           5 KLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAK   49 (103)
Q Consensus         5 klIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~   49 (103)
                      +.+|+|+|-+||||.-++..| +.++   ..++++++.+.+.+..
T Consensus         1 k~~I~l~G~~GsGKsT~a~~L-~~~g---~~~i~~~~~~~~~~~~   41 (179)
T 3lw7_A            1 IKVILITGMPGSGKSEFAKLL-KERG---AKVIVMSDVVRKRYSI   41 (179)
T ss_dssp             -CEEEEECCTTSCHHHHHHHH-HHTT---CEEEEHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHH-HHCC---CcEEEHhHHHHHHHHh
Confidence            358899999999999999999 6664   6688888888877665

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=96.82  E-value=0.0027  Score=42.75  Aligned_cols=53  Identities=11%  Similarity=0.276  Sum_probs=39.8

Q ss_pred             EEEEEecCcCCchhHHHHHHHHHhcccc--eEEEecchhhHHHHHHHcCc--cHHHhc
Q psy4713           6 LILLFSGKRKSGKDFLTDYLLERIGSQH--CAIIRLSAPIKSHWAKQNGL--EMDKLL   59 (103)
Q Consensus         6 lIiL~sGKrksGKDy~a~~l~~~l~~~~--~~iv~iS~piK~~yA~~~gl--Dl~~LL   59 (103)
                      .+|+|+|-.||||.-++..|++.++...  ..++++++-+++. +...|.  +.+++.
T Consensus         4 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~~~~~~r~~-~~~~~~~~~~~~~~   60 (192)
T 1kht_A            4 KVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEV-AKEENLVSDRDQMR   60 (192)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHHHHHHHH-HHHTTSCSSGGGGS
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEehHHHHHHH-HhccCCCCCHHHHh
Confidence            5789999999999999999999997533  6778887777665 344554  444443

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=96.80  E-value=0.0011  Score=44.70  Aligned_cols=37  Identities=22%  Similarity=0.262  Sum_probs=28.7

Q ss_pred             EEEEecCcCCchhHHHHHHHHHhcccceEEEecchhh
Q psy4713           7 ILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPI   43 (103)
Q Consensus         7 IiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~pi   43 (103)
                      +|+|+|-.||||--++..|++.+....+.++..-.|.
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d~~~   38 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYREPG   38 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            6899999999999999999999854344555544443

>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}

Probab=96.66  E-value=0.003  Score=46.89  Aligned_cols=54  Identities=17%  Similarity=0.193  Sum_probs=37.2

Q ss_pred             CCCCeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHHHcCccHHHhc
Q psy4713           1 MTQPKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQNGLEMDKLL   59 (103)
Q Consensus         1 ~~~pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~~~glDl~~LL   59 (103)
                      |.+.+.||.|+|..||||.-++..|++++|   +.++.  +.+=++.|+..|++.+.+-
T Consensus        10 m~~~~~iI~i~g~~gsGk~~i~~~la~~lg---~~~~d--~~~~~~~a~~~g~~~~~~~   63 (223)
T 3hdt_A           10 MGNKNLIITIEREYGSGGRIVGKKLAEELG---IHFYD--DDILKLASEKSAVGEQFFR   63 (223)
T ss_dssp             --CCCEEEEEEECTTSCHHHHHHHHHHHHT---CEEEC--HHHHHHHHHCC--------
T ss_pred             cCCCCeEEEEeCCCCCCHHHHHHHHHHHcC---CcEEc--HHHHHHHHHHcCCCHHHHH
Confidence            566688999999999999999999999996   45544  5566678999999876553

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=96.45  E-value=0.0019  Score=43.94  Aligned_cols=41  Identities=17%  Similarity=0.309  Sum_probs=31.8

Q ss_pred             CCeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHH
Q psy4713           3 QPKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSH   46 (103)
Q Consensus         3 ~pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~   46 (103)
                      .+..+|+|+|-.||||--++..|++.++   ..+++..+-+.+.
T Consensus         7 ~~~~~I~l~G~~GsGKsT~~~~La~~l~---~~~i~~d~~~~~~   47 (196)
T 2c95_A            7 KKTNIIFVVGGPGSGKGTQCEKIVQKYG---YTHLSTGDLLRSE   47 (196)
T ss_dssp             TTSCEEEEEECTTSSHHHHHHHHHHHHC---CEEEEHHHHHHHH
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHHHhC---CeEEcHHHHHHHH
Confidence            3456788999999999999999999986   4566666555543

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=96.36  E-value=0.01  Score=40.49  Aligned_cols=48  Identities=21%  Similarity=0.225  Sum_probs=34.3

Q ss_pred             CCCCeEEEEEecCcCCchhHHHHHHHHHhcccceEEEe----cchhhHHHHHHH
Q psy4713           1 MTQPKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIR----LSAPIKSHWAKQ   50 (103)
Q Consensus         1 ~~~pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~----iS~piK~~yA~~   50 (103)
                      |+++ .+|+|+|-.||||.-++..|++.++... .++.    +++.+++.+...
T Consensus         1 mm~~-~~I~i~G~~GsGKsT~~~~L~~~l~~~g-~~~~~~~~~~~~i~~~~~~~   52 (213)
T 2plr_A            1 MKKG-VLIAFEGIDGSGKSSQATLLKDWIELKR-DVYLTEWNSSDWIHDIIKEA   52 (213)
T ss_dssp             -CCC-EEEEEECCTTSSHHHHHHHHHHHHTTTS-CEEEEETTCCCHHHHHHHHH
T ss_pred             CCCC-eEEEEEcCCCCCHHHHHHHHHHHHhhcC-CEEEecCCcHHHHHHHHhcc
Confidence            5444 5788999999999999999999997532 3344    455566666553

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=96.29  E-value=0.004  Score=42.37  Aligned_cols=40  Identities=20%  Similarity=0.297  Sum_probs=32.9

Q ss_pred             eEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHH
Q psy4713           5 KLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHW   47 (103)
Q Consensus         5 klIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~y   47 (103)
                      ..+|+|+|-.||||.-++..|++.++   +.+++..+-+.++.
T Consensus        12 ~~~I~l~G~~GsGKsT~a~~L~~~l~---~~~i~~d~~~~~~~   51 (199)
T 2bwj_A           12 CKIIFIIGGPGSGKGTQCEKLVEKYG---FTHLSTGELLREEL   51 (199)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHHHHT---CEEEEHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhC---CeEEcHHHHHHHHH
Confidence            35788999999999999999999986   66777766666655

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=96.20  E-value=0.011  Score=39.48  Aligned_cols=45  Identities=13%  Similarity=0.302  Sum_probs=32.9

Q ss_pred             EEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHHHcCccHHHh
Q psy4713           7 ILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQNGLEMDKL   58 (103)
Q Consensus         7 IiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~~~glDl~~L   58 (103)
                      +|+|+|-.||||--++..|++.++   +.++.....+++.    .|..+.++
T Consensus         4 ~I~l~G~~GsGKsT~a~~La~~lg---~~~id~d~~~~~~----~g~~~~~~   48 (173)
T 1e6c_A            4 PIFMVGARGCGMTTVGRELARALG---YEFVDTDIFMQHT----SGMTVADV   48 (173)
T ss_dssp             CEEEESCTTSSHHHHHHHHHHHHT---CEEEEHHHHHHHH----HCSCHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhC---CcEEcccHHHHHH----hCCCHHHH
Confidence            688999999999999999999986   4566655444332    45555444

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=96.19  E-value=0.013  Score=39.32  Aligned_cols=39  Identities=13%  Similarity=0.201  Sum_probs=32.0

Q ss_pred             EEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHH
Q psy4713           6 LILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHW   47 (103)
Q Consensus         6 lIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~y   47 (103)
                      .+|+|+|-.||||--++..|++.++   ..+++..+-+.++.
T Consensus         7 ~~I~l~G~~GsGKsT~~~~L~~~l~---~~~i~~d~~~~~~~   45 (194)
T 1qf9_A            7 NVVFVLGGPGSGKGTQCANIVRDFG---WVHLSAGDLLRQEQ   45 (194)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHHC---CEEEEHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhC---CeEeeHHHHHHHHH
Confidence            5789999999999999999999986   56677666666554

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=96.17  E-value=0.007  Score=41.09  Aligned_cols=42  Identities=14%  Similarity=0.104  Sum_probs=29.6

Q ss_pred             CCCCeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHH
Q psy4713           1 MTQPKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKS   45 (103)
Q Consensus         1 ~~~pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~   45 (103)
                      |.++.-+|+++|-+||||--++..|++.++   +.+++....+++
T Consensus         1 m~~~~~~i~l~G~~GsGKst~a~~La~~l~---~~~i~~d~~~~~   42 (185)
T 3trf_A            1 MKKNLTNIYLIGLMGAGKTSVGSQLAKLTK---RILYDSDKEIEK   42 (185)
T ss_dssp             ----CCEEEEECSTTSSHHHHHHHHHHHHC---CCEEEHHHHHHH
T ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHHHHhC---CCEEEChHHHHH
Confidence            554445677899999999999999999986   556665554443

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=96.02  E-value=0.0052  Score=42.31  Aligned_cols=29  Identities=17%  Similarity=0.357  Sum_probs=25.4

Q ss_pred             CeEEEEEecCcCCchhHHHHHHHHHhccc
Q psy4713           4 PKLILLFSGKRKSGKDFLTDYLLERIGSQ   32 (103)
Q Consensus         4 pklIiL~sGKrksGKDy~a~~l~~~l~~~   32 (103)
                      +..+|+|+|-.||||.-++..|++.++..
T Consensus         8 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~   36 (215)
T 1nn5_A            8 RGALIVLEGVDRAGKSTQSRKLVEALCAA   36 (215)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence            34678999999999999999999998753

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=95.92  E-value=0.014  Score=42.63  Aligned_cols=43  Identities=16%  Similarity=0.126  Sum_probs=35.6

Q ss_pred             CCeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHH
Q psy4713           3 QPKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWA   48 (103)
Q Consensus         3 ~pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA   48 (103)
                      ++..+|+|+|-.||||.-++..|.+.++   +.+++.++-+++..+
T Consensus        27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~g---~~~is~~~~~r~~~~   69 (243)
T 3tlx_A           27 KPDGRYIFLGAPGSGKGTQSLNLKKSHC---YCHLSTGDLLREAAE   69 (243)
T ss_dssp             SCCEEEEEECCTTSSHHHHHHHHHHHHC---CEEEEHHHHHHHHTT
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHhC---CeEEecHHHHHHHHh
Confidence            4567889999999999999999999884   677888887777543

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=95.91  E-value=0.017  Score=38.44  Aligned_cols=46  Identities=15%  Similarity=0.270  Sum_probs=36.1

Q ss_pred             EEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHHHcCccHHHhc
Q psy4713           7 ILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQNGLEMDKLL   59 (103)
Q Consensus         7 IiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~~~glDl~~LL   59 (103)
                      +|+|+|-.||||--++..|++.++   +.++...++.++.+    |..+.+++
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~l~---~~~i~~d~~~~~~~----g~~~~~~~   47 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSRSLN---IPFYDVDEEVQKRE----GLSIPQIF   47 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHHHHT---CCEEEHHHHHHHHH----TSCHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhC---CCEEECcHHHHHHc----CCCHHHHH
Confidence            689999999999999999999986   56777777765543    55665554

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=95.85  E-value=0.0088  Score=41.78  Aligned_cols=53  Identities=19%  Similarity=0.285  Sum_probs=39.4

Q ss_pred             EEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHHH--cCccHHHhcCCC
Q psy4713           7 ILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQ--NGLEMDKLLGAT   62 (103)
Q Consensus         7 IiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~~--~glDl~~LL~d~   62 (103)
                      .|+|+|-.||||.-++..|++.++   +.+++.++-+++..+..  .|..+.+++..+
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~~---~~~i~~d~~~r~~~~~~~~~~~~~~~~~~~g   56 (216)
T 3dl0_A            2 NLVLMGLPGAGKGTQGERIVEKYG---IPHISTGDMFRAAMKEETPLGLEAKSYIDKG   56 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHSS---CCEEEHHHHHHHHHHTTCHHHHHHHHHHTTT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC---CcEEeHHHHHHHHHhcCCHHHHHHHHHHHCC
Confidence            578899999999999999999874   67888888888765542  233444555444

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=95.78  E-value=0.0068  Score=46.13  Aligned_cols=39  Identities=13%  Similarity=0.158  Sum_probs=29.4

Q ss_pred             CCCCeEEEEEecCcCCchhHHHHHHHHHhcc--cceEEEec
Q psy4713           1 MTQPKLILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIRL   39 (103)
Q Consensus         1 ~~~pklIiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~i   39 (103)
                      |.+++.||.|||-+||||--++..|++.++.  .++.++..
T Consensus         1 Ms~~~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~   41 (290)
T 1a7j_A            1 MSKKHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEG   41 (290)
T ss_dssp             -CTTSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEG
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeec
Confidence            7778889999999999999999999999874  34666663

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=95.77  E-value=0.0086  Score=41.51  Aligned_cols=40  Identities=20%  Similarity=0.293  Sum_probs=32.4

Q ss_pred             CeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHH
Q psy4713           4 PKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSH   46 (103)
Q Consensus         4 pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~   46 (103)
                      ...+|+|+|-.||||--++..|++.++   ..+++..+-+++.
T Consensus        19 ~~~~I~l~G~~GsGKST~a~~La~~l~---~~~i~~d~~~r~~   58 (201)
T 2cdn_A           19 SHMRVLLLGPPGAGKGTQAVKLAEKLG---IPQISTGELFRRN   58 (201)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHHHHT---CCEEEHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhC---CcEEehhHHHHHH
Confidence            446889999999999999999999986   4567776666553

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=95.76  E-value=0.017  Score=39.22  Aligned_cols=34  Identities=24%  Similarity=0.286  Sum_probs=26.7

Q ss_pred             EEEEEecCcCCchhHHHHHHHHHhcccceEEEecchh
Q psy4713           6 LILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAP   42 (103)
Q Consensus         6 lIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~p   42 (103)
                      .+|+|+|-+||||..++..|.+.++   +..++..+-
T Consensus        12 ~~i~i~G~~GsGKst~~~~l~~~~~---~~~~~~d~~   45 (180)
T 3iij_A           12 PNILLTGTPGVGKTTLGKELASKSG---LKYINVGDL   45 (180)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHHHC---CEEEEHHHH
T ss_pred             CeEEEEeCCCCCHHHHHHHHHHHhC---CeEEEHHHH
Confidence            3567999999999999999999985   445555443

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=95.74  E-value=0.0081  Score=44.65  Aligned_cols=58  Identities=16%  Similarity=0.284  Sum_probs=38.4

Q ss_pred             CCCCeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHHH--cCccHHHhcCCC
Q psy4713           1 MTQPKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQ--NGLEMDKLLGAT   62 (103)
Q Consensus         1 ~~~pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~~--~glDl~~LL~d~   62 (103)
                      |.+||+|+ |.|..||||.=.|..|++.++   ..-||..+-++.+-+..  .|..+...+..+
T Consensus        26 ~~k~kiI~-llGpPGsGKgTqa~~L~~~~g---~~hIstGdllR~~i~~~t~lg~~~~~~~~~G   85 (217)
T 3umf_A           26 LAKAKVIF-VLGGPGSGKGTQCEKLVQKFH---FNHLSSGDLLRAEVQSGSPKGKELKAMMERG   85 (217)
T ss_dssp             TTSCEEEE-EECCTTCCHHHHHHHHHHHHC---CEEECHHHHHHHHHTTCCHHHHHHHHHHHHT
T ss_pred             ccCCcEEE-EECCCCCCHHHHHHHHHHHHC---CceEcHHHHHHHHHHcCCchHHHHHHHHhcC
Confidence            45677554 569999999999999999985   55566666666654432  233444444443

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=95.73  E-value=0.022  Score=38.26  Aligned_cols=46  Identities=22%  Similarity=0.256  Sum_probs=36.4

Q ss_pred             EEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHHHcCccHHHhc
Q psy4713           7 ILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQNGLEMDKLL   59 (103)
Q Consensus         7 IiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~~~glDl~~LL   59 (103)
                      +|+|+|-.||||--++..|++.++   +.++....++.+.+    |..+.+++
T Consensus         9 ~i~l~G~~GsGKSTva~~La~~lg---~~~id~D~~~~~~~----g~~~~~~~   54 (168)
T 1zuh_A            9 HLVLIGFMGSGKSSLAQELGLALK---LEVLDTDMIISERV----GLSVREIF   54 (168)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHHHT---CCEEEHHHHHHHHH----TSCHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhC---CCEEEChHHHHHHh----CCCHHHHH
Confidence            789999999999999999999986   56777777766543    65665554

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=95.69  E-value=0.02  Score=38.35  Aligned_cols=42  Identities=19%  Similarity=0.146  Sum_probs=32.9

Q ss_pred             EEEEEecCcCCchhHHHHHHHHHhccc--ceEEEecchhhHHHH
Q psy4713           6 LILLFSGKRKSGKDFLTDYLLERIGSQ--HCAIIRLSAPIKSHW   47 (103)
Q Consensus         6 lIiL~sGKrksGKDy~a~~l~~~l~~~--~~~iv~iS~piK~~y   47 (103)
                      .+|+|+|-.||||.-++..|++.++..  .+..+..++++.+..
T Consensus         2 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~~~~~~   45 (194)
T 1nks_A            2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATA   45 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECChHHHHHH
Confidence            378999999999999999999999752  355666667765544

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=95.68  E-value=0.061  Score=34.96  Aligned_cols=25  Identities=24%  Similarity=0.272  Sum_probs=22.0

Q ss_pred             EEEEecCcCCchhHHHHHHHHHhcc
Q psy4713           7 ILLFSGKRKSGKDFLTDYLLERIGS   31 (103)
Q Consensus         7 IiL~sGKrksGKDy~a~~l~~~l~~   31 (103)
                      .++|+|.+|+||-.++..+...+..
T Consensus        45 ~~ll~G~~G~GKT~l~~~~~~~~~~   69 (195)
T 1jbk_A           45 NPVLIGEPGVGKTAIVEGLAQRIIN   69 (195)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             ceEEECCCCCCHHHHHHHHHHHHHh
Confidence            4689999999999999999998843

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=95.66  E-value=0.016  Score=40.29  Aligned_cols=40  Identities=13%  Similarity=0.201  Sum_probs=33.3

Q ss_pred             EEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHH
Q psy4713           7 ILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAK   49 (103)
Q Consensus         7 IiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~   49 (103)
                      +|+|+|-.||||.-++..|++.++   +.+++.++-+++....
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~~---~~~i~~d~~~r~~~~~   41 (216)
T 3fb4_A            2 NIVLMGLPGAGKGTQAEQIIEKYE---IPHISTGDMFRAAIKN   41 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHC---CCEEEHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC---CcEeeHHHHHHHHHhc
Confidence            578899999999999999999885   6678888877776543

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=95.56  E-value=0.013  Score=39.41  Aligned_cols=25  Identities=16%  Similarity=0.324  Sum_probs=23.0

Q ss_pred             EEEEEecCcCCchhHHHHHHHHHhc
Q psy4713           6 LILLFSGKRKSGKDFLTDYLLERIG   30 (103)
Q Consensus         6 lIiL~sGKrksGKDy~a~~l~~~l~   30 (103)
                      .+|+|+|-+||||.-++..|+++++
T Consensus         4 ~~i~l~G~~GsGKST~a~~La~~l~   28 (178)
T 1qhx_A            4 RMIILNGGSSAGKSGIVRCLQSVLP   28 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhcC
Confidence            4678999999999999999999986

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=95.51  E-value=0.02  Score=38.94  Aligned_cols=37  Identities=24%  Similarity=0.377  Sum_probs=27.9

Q ss_pred             CCCCeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecch
Q psy4713           1 MTQPKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSA   41 (103)
Q Consensus         1 ~~~pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~   41 (103)
                      |.++..+|.|+|..||||--++..|++. |   +.++...+
T Consensus         4 ~~~~~~~I~i~G~~GsGKST~~~~La~~-g---~~~id~d~   40 (203)
T 1uf9_A            4 EAKHPIIIGITGNIGSGKSTVAALLRSW-G---YPVLDLDA   40 (203)
T ss_dssp             --CCCEEEEEEECTTSCHHHHHHHHHHT-T---CCEEEHHH
T ss_pred             cccCceEEEEECCCCCCHHHHHHHHHHC-C---CEEEcccH
Confidence            3455678999999999999999999997 4   44555433

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=95.47  E-value=0.045  Score=35.87  Aligned_cols=25  Identities=20%  Similarity=0.194  Sum_probs=22.1

Q ss_pred             EEEEecCcCCchhHHHHHHHHHhcc
Q psy4713           7 ILLFSGKRKSGKDFLTDYLLERIGS   31 (103)
Q Consensus         7 IiL~sGKrksGKDy~a~~l~~~l~~   31 (103)
                      -+||+|.+|+||-.++..+...+..
T Consensus        45 ~vll~G~~G~GKT~la~~~~~~~~~   69 (187)
T 2p65_A           45 NPILLGDPGVGKTAIVEGLAIKIVQ   69 (187)
T ss_dssp             EEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred             ceEEECCCCCCHHHHHHHHHHHHHh
Confidence            4589999999999999999998843

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=95.46  E-value=0.015  Score=39.26  Aligned_cols=44  Identities=18%  Similarity=0.343  Sum_probs=32.5

Q ss_pred             CCCCeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHH
Q psy4713           1 MTQPKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAK   49 (103)
Q Consensus         1 ~~~pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~   49 (103)
                      |..| .+|+|+|-+||||--++..|.+.++   ..+++. +.+.+....
T Consensus         2 ~~~~-~~I~l~G~~GsGKST~~~~L~~~l~---~~~i~~-D~~~~~~~~   45 (193)
T 2rhm_A            2 MQTP-ALIIVTGHPATGKTTLSQALATGLR---LPLLSK-DAFKEVMFD   45 (193)
T ss_dssp             CSCC-EEEEEEESTTSSHHHHHHHHHHHHT---CCEEEH-HHHHHHHHH
T ss_pred             CCCC-eEEEEECCCCCCHHHHHHHHHHHcC---CeEecH-HHHHHHHHH
Confidence            4444 5788999999999999999999986   334543 666655554

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=95.38  E-value=0.035  Score=37.14  Aligned_cols=40  Identities=15%  Similarity=0.297  Sum_probs=31.5

Q ss_pred             eEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHH
Q psy4713           5 KLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHW   47 (103)
Q Consensus         5 klIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~y   47 (103)
                      ..+|+|+|-.||||--++..|++.++   ..+++..+-+....
T Consensus         3 ~~~I~l~G~~GsGKsT~a~~L~~~~~---~~~i~~d~~~~~~~   42 (196)
T 1tev_A            3 PLVVFVLGGPGAGKGTQCARIVEKYG---YTHLSAGELLRDER   42 (196)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHC---CEEEEHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhC---CeEEeHHHHHHHHH
Confidence            45788999999999999999999986   45666666555544

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=95.37  E-value=0.013  Score=40.80  Aligned_cols=30  Identities=23%  Similarity=0.325  Sum_probs=24.9

Q ss_pred             CCCCeEEEEEecCcCCchhHHHHHHHHHhc
Q psy4713           1 MTQPKLILLFSGKRKSGKDFLTDYLLERIG   30 (103)
Q Consensus         1 ~~~pklIiL~sGKrksGKDy~a~~l~~~l~   30 (103)
                      |+....+|.|+|.+||||--++..|...++
T Consensus         1 mm~~~~~i~i~G~~GsGKSTl~~~L~~~~g   30 (227)
T 1cke_A            1 MTAIAPVITIDGPSGAGKGTLCKAMAEALQ   30 (227)
T ss_dssp             --CCSCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            555456899999999999999999999886

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=95.36  E-value=0.035  Score=38.19  Aligned_cols=41  Identities=10%  Similarity=0.162  Sum_probs=32.2

Q ss_pred             CeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHH
Q psy4713           4 PKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHW   47 (103)
Q Consensus         4 pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~y   47 (103)
                      ...+|+|+|-.||||--++..|.+.++   +.+++.++-+++++
T Consensus        14 ~~~~I~l~G~~GsGKsT~~~~L~~~~g---~~~i~~d~~~~~~~   54 (203)
T 1ukz_A           14 QVSVIFVLGGPGAGKGTQCEKLVKDYS---FVHLSAGDLLRAEQ   54 (203)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHHHHSS---CEEEEHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHcC---ceEEeHHHHHHHHH
Confidence            345889999999999999999999875   56677666555543

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=95.36  E-value=0.029  Score=40.94  Aligned_cols=55  Identities=18%  Similarity=0.238  Sum_probs=40.6

Q ss_pred             CeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHHHcCccHHHhcCCCC
Q psy4713           4 PKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQNGLEMDKLLGATK   63 (103)
Q Consensus         4 pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~~~glDl~~LL~d~~   63 (103)
                      +..+|+|.|-.||||.-++..|.+.++. ...++....|......+    .+.+++.++.
T Consensus        25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~~~~p~~~~~g~----~i~~~~~~~~   79 (229)
T 4eaq_A           25 MSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMTREPGGVPTGE----EIRKIVLEGN   79 (229)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEECTTTTCHHHH----HHHHHTTC--
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCceeecCCCCCchHH----HHHHHHhCCC
Confidence            4567889999999999999999999986 55666666676555544    5666666655

>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}

Probab=95.27  E-value=0.011  Score=42.42  Aligned_cols=48  Identities=15%  Similarity=0.208  Sum_probs=32.6

Q ss_pred             eEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHHHcCccHHH
Q psy4713           5 KLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQNGLEMDK   57 (103)
Q Consensus         5 klIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~~~glDl~~   57 (103)
                      +.||.|+|..||||.-++..|+++||   ...+-  +.+=++.|+.+|++.+.
T Consensus         6 ~~iI~i~g~~GsGk~ti~~~la~~lg---~~~~D--~~~~~~~a~~~g~~~~~   53 (201)
T 3fdi_A            6 QIIIAIGREFGSGGHLVAKKLAEHYN---IPLYS--KELLDEVAKDGRYSKEV   53 (201)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHHHTT---CCEEC--HHHHHHTTCC-------
T ss_pred             CeEEEEeCCCCCCHHHHHHHHHHHhC---cCEEC--HHHHHHHHHhcCCCHHH
Confidence            56999999999999999999999997   34443  44545567778887543

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=95.27  E-value=0.019  Score=40.41  Aligned_cols=42  Identities=19%  Similarity=0.251  Sum_probs=33.7

Q ss_pred             CCeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHH
Q psy4713           3 QPKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHW   47 (103)
Q Consensus         3 ~pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~y   47 (103)
                      .+..+|+|+|-.||||--++..|++.++   +.+++..+-+++..
T Consensus         2 ~~~~~I~l~G~~GsGKsT~a~~La~~l~---~~~i~~d~~~~~~~   43 (220)
T 1aky_A            2 SESIRMVLIGPPGAGKGTQAPNLQERFH---AAHLATGDMLRSQI   43 (220)
T ss_dssp             -CCCEEEEECCTTSSHHHHHHHHHHHHC---CEEEEHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHcC---ceEEehhHHHHHHH
Confidence            3456789999999999999999999986   56777777776653

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=95.26  E-value=0.027  Score=40.25  Aligned_cols=39  Identities=10%  Similarity=0.103  Sum_probs=32.0

Q ss_pred             EEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHH
Q psy4713           6 LILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHW   47 (103)
Q Consensus         6 lIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~y   47 (103)
                      ..|+|+|-.||||-.++..|++.++   +.+++..+-+.+..
T Consensus        17 ~~I~l~G~~GsGKsT~a~~La~~l~---~~~i~~d~li~~~~   55 (233)
T 1ak2_A           17 VRAVLLGPPGAGKGTQAPKLAKNFC---VCHLATGDMLRAMV   55 (233)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHT---CEEEEHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhC---CceecHHHHHHHHH
Confidence            5688999999999999999999986   56777766666543

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=95.25  E-value=0.013  Score=40.67  Aligned_cols=26  Identities=23%  Similarity=0.272  Sum_probs=23.6

Q ss_pred             eEEEEEecCcCCchhHHHHHHHHHhc
Q psy4713           5 KLILLFSGKRKSGKDFLTDYLLERIG   30 (103)
Q Consensus         5 klIiL~sGKrksGKDy~a~~l~~~l~   30 (103)
                      ..+|+|+|-+||||--++..|...++
T Consensus        18 ~~~I~l~G~~GsGKSTla~~L~~~lg   43 (202)
T 3t61_A           18 PGSIVVMGVSGSGKSSVGEAIAEACG   43 (202)
T ss_dssp             SSCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            34789999999999999999999986

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=95.18  E-value=0.014  Score=41.38  Aligned_cols=30  Identities=23%  Similarity=0.411  Sum_probs=25.8

Q ss_pred             CCCCeEEEEEecCcCCchhHHHHHHHHHhc
Q psy4713           1 MTQPKLILLFSGKRKSGKDFLTDYLLERIG   30 (103)
Q Consensus         1 ~~~pklIiL~sGKrksGKDy~a~~l~~~l~   30 (103)
                      |+++.-+|+|+|.+||||.=++..|...+.
T Consensus         4 m~~~g~~i~l~GpsGsGKsTl~~~L~~~~~   33 (208)
T 3tau_A            4 MTERGLLIVLSGPSGVGKGTVREAVFKDPE   33 (208)
T ss_dssp             -CCCCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred             ccCCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence            666777888999999999999999998874

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=95.18  E-value=0.022  Score=38.36  Aligned_cols=26  Identities=19%  Similarity=0.296  Sum_probs=23.6

Q ss_pred             eEEEEEecCcCCchhHHHHHHHHHhc
Q psy4713           5 KLILLFSGKRKSGKDFLTDYLLERIG   30 (103)
Q Consensus         5 klIiL~sGKrksGKDy~a~~l~~~l~   30 (103)
                      .-+|+++|.+||||--++..|...+|
T Consensus         8 g~~i~l~G~~GsGKSTl~~~l~~~~g   33 (175)
T 1knq_A            8 HHIYVLMGVSGSGKSAVASEVAHQLH   33 (175)
T ss_dssp             SEEEEEECSTTSCHHHHHHHHHHHHT
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHhhC
Confidence            36889999999999999999999886

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=95.17  E-value=0.027  Score=39.52  Aligned_cols=52  Identities=15%  Similarity=0.335  Sum_probs=39.7

Q ss_pred             EEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHH--HcCccHHHhcCC
Q psy4713           7 ILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAK--QNGLEMDKLLGA   61 (103)
Q Consensus         7 IiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~--~~glDl~~LL~d   61 (103)
                      .|+|+|-.||||--++..|++.++   ..+++.++-++++...  ..|..+.+++.+
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~g---~~~i~~d~~~r~~~~~~~~~g~~i~~~~~~   55 (214)
T 1e4v_A            2 RIILLGAPVAGKGTQAQFIMEKYG---IPQISTGDMLRAAVKSGSELGKQAKDIMDA   55 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHC---CCEEEHHHHHHHHHHHTCTTTGGGHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC---CeEEeHHHHHHHHHHcCChHHHHHHHHHHC
Confidence            479999999999999999999985   6678888888776655  234455555543

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=95.16  E-value=0.033  Score=37.76  Aligned_cols=46  Identities=17%  Similarity=0.354  Sum_probs=33.0

Q ss_pred             EEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHHHcCccHHHhc
Q psy4713           7 ILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQNGLEMDKLL   59 (103)
Q Consensus         7 IiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~~~glDl~~LL   59 (103)
                      +|+|+|-.||||--++..|++.++   +.+++..+-+++.    .|..+.+++
T Consensus         4 ~I~l~G~~GsGKsT~a~~La~~lg---~~~id~D~~~~~~----~g~~~~~~~   49 (184)
T 2iyv_A            4 KAVLVGLPGSGKSTIGRRLAKALG---VGLLDTDVAIEQR----TGRSIADIF   49 (184)
T ss_dssp             SEEEECSTTSSHHHHHHHHHHHHT---CCEEEHHHHHHHH----HSSCHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHcC---CCEEeCchHHHHH----cCCCHHHHH
Confidence            588999999999999999999986   4566654443332    355544443

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=95.12  E-value=0.02  Score=37.75  Aligned_cols=24  Identities=13%  Similarity=0.211  Sum_probs=22.7

Q ss_pred             EEEEecCcCCchhHHHHHHHHHhc
Q psy4713           7 ILLFSGKRKSGKDFLTDYLLERIG   30 (103)
Q Consensus         7 IiL~sGKrksGKDy~a~~l~~~l~   30 (103)
                      +|+|+|-+||||--++..|.++++
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~~~l~   26 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSKELK   26 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            789999999999999999999986

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=94.92  E-value=0.044  Score=39.70  Aligned_cols=39  Identities=18%  Similarity=0.313  Sum_probs=30.7

Q ss_pred             CeEEEEEecCcCCchhHHHHHHHHHhccc-------ceEEEecchh
Q psy4713           4 PKLILLFSGKRKSGKDFLTDYLLERIGSQ-------HCAIIRLSAP   42 (103)
Q Consensus         4 pklIiL~sGKrksGKDy~a~~l~~~l~~~-------~~~iv~iS~p   42 (103)
                      ...||.|+|-.||||-.++..|++.++-.       .+.+++..+=
T Consensus        21 ~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~   66 (252)
T 1uj2_A           21 EPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSF   66 (252)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGG
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCcc
Confidence            45789999999999999999999998742       3456665543

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=94.92  E-value=0.018  Score=43.34  Aligned_cols=52  Identities=15%  Similarity=0.287  Sum_probs=35.4

Q ss_pred             CCCCeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHH---HHcCccHH
Q psy4713           1 MTQPKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWA---KQNGLEMD   56 (103)
Q Consensus         1 ~~~pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA---~~~glDl~   56 (103)
                      |++.+++|.|+|.+||||.-++..|.+.++   ...+. ++.+-+..+   ...|.|++
T Consensus         5 m~~~~~~i~i~G~~GsGKsTla~~la~~lg---~~~~d-~g~~~r~~~~~~~~~gi~~~   59 (233)
T 3r20_A            5 MVSGSLVVAVDGPAGTGKSSVSRGLARALG---ARYLD-TGAMYRIATLAVLRAGADLT   59 (233)
T ss_dssp             ----CCEEEEECCTTSSHHHHHHHHHHHHT---CEEEE-HHHHHHHHHHHHHHHTCCTT
T ss_pred             cCCCCeEEEEECCCCCCHHHHHHHHHHHhC---CCccc-CCcHHHHHHHHHHHcCCCch
Confidence            556678999999999999999999999986   33444 344444433   56777643

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=94.91  E-value=0.033  Score=40.43  Aligned_cols=28  Identities=29%  Similarity=0.284  Sum_probs=25.2

Q ss_pred             CeEEEEEecCcCCchhHHHHHHHHHhcc
Q psy4713           4 PKLILLFSGKRKSGKDFLTDYLLERIGS   31 (103)
Q Consensus         4 pklIiL~sGKrksGKDy~a~~l~~~l~~   31 (103)
                      |.-.+||+|.+|+||-.+|..++..+..
T Consensus        46 ~~~~~ll~G~~GtGKt~la~~la~~~~~   73 (311)
T 4fcw_A           46 PIGSFLFLGPTGVGKTELAKTLAATLFD   73 (311)
T ss_dssp             CSEEEEEESCSSSSHHHHHHHHHHHHHS
T ss_pred             CceEEEEECCCCcCHHHHHHHHHHHHcC
Confidence            5568999999999999999999999864

>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A

Probab=94.89  E-value=0.029  Score=44.29  Aligned_cols=56  Identities=27%  Similarity=0.418  Sum_probs=46.4

Q ss_pred             CeEEEEEecCcCCchhHHHHHHHHHhcc--cceEEEecchhhHHHHHHHcCccHHHhc
Q psy4713           4 PKLILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIRLSAPIKSHWAKQNGLEMDKLL   59 (103)
Q Consensus         4 pklIiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~iS~piK~~yA~~~glDl~~LL   59 (103)
                      +.-|++|+|+.+|||--++..+...+..  ..|..++..++....+|...|.|+++|+
T Consensus        62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~  119 (356)
T 1u94_A           62 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLL  119 (356)
T ss_dssp             TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhhee
Confidence            3457899999999999999888766543  5788899988888889999999998875

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=94.88  E-value=0.035  Score=39.34  Aligned_cols=54  Identities=11%  Similarity=0.167  Sum_probs=38.2

Q ss_pred             EEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHHH--cCccHHHhcCCC
Q psy4713           6 LILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQ--NGLEMDKLLGAT   62 (103)
Q Consensus         6 lIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~~--~glDl~~LL~d~   62 (103)
                      .+|+|+|-.||||--++..|++.++   ...++.++-+.......  .|..+.+++.++
T Consensus         8 ~~I~l~G~~GsGKsT~a~~La~~l~---~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g   63 (227)
T 1zd8_A            8 LRAVIMGAPGSGKGTVSSRITTHFE---LKHLSSGDLLRDNMLRGTEIGVLAKAFIDQG   63 (227)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHSS---SEEEEHHHHHHHHHHHTCHHHHHHHHHHTTT
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHcC---CeEEechHHHHHhhhcCChHHHHHHHHHHcC
Confidence            5788999999999999999999885   56777777666654331  133444555443

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=94.87  E-value=0.066  Score=38.49  Aligned_cols=43  Identities=14%  Similarity=0.281  Sum_probs=34.8

Q ss_pred             CeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHH
Q psy4713           4 PKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAK   49 (103)
Q Consensus         4 pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~   49 (103)
                      .+.+|.+||-.||||--++..|++.+|   +.++...+-.++.+.+
T Consensus        11 ~~~iIgltG~~GSGKSTva~~L~~~lg---~~vid~D~~~~~~~~~   53 (192)
T 2grj_A           11 HHMVIGVTGKIGTGKSTVCEILKNKYG---AHVVNVDRIGHEVLEE   53 (192)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHHC---CEEEEHHHHHHHHHHH
T ss_pred             cceEEEEECCCCCCHHHHHHHHHHhcC---CEEEECcHHHHHHHHH
Confidence            578999999999999999999999875   7777765555555543

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=94.76  E-value=0.026  Score=39.75  Aligned_cols=54  Identities=20%  Similarity=0.291  Sum_probs=37.8

Q ss_pred             EEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHH--HcCccHHHhcCCC
Q psy4713           6 LILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAK--QNGLEMDKLLGAT   62 (103)
Q Consensus         6 lIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~--~~glDl~~LL~d~   62 (103)
                      .+|+|+|-.||||.-++..|++.++   ...++.++-+.++...  ..|.++.+++.++
T Consensus         6 ~~I~l~G~~GsGKsT~~~~La~~l~---~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g   61 (222)
T 1zak_A            6 LKVMISGAPASGKGTQCELIKTKYQ---LAHISAGDLLRAEIAAGSENGKRAKEFMEKG   61 (222)
T ss_dssp             CCEEEEESTTSSHHHHHHHHHHHHC---CEECCHHHHHHHHHHHTCHHHHHHHHHHHTT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhC---CceecHHHHHHHHHHcCCchhHHHHHHHHcC
Confidence            4688999999999999999999986   4556666666654332  2344555555444

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=94.74  E-value=0.033  Score=38.04  Aligned_cols=24  Identities=25%  Similarity=0.429  Sum_probs=23.0

Q ss_pred             EEEEecCcCCchhHHHHHHHHHhc
Q psy4713           7 ILLFSGKRKSGKDFLTDYLLERIG   30 (103)
Q Consensus         7 IiL~sGKrksGKDy~a~~l~~~l~   30 (103)
                      +|.|+|..||||--++..|++.++
T Consensus         4 ~i~i~G~~GsGKst~~~~la~~lg   27 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAAALG   27 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHhcC
Confidence            899999999999999999999986

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=94.71  E-value=0.025  Score=38.81  Aligned_cols=27  Identities=26%  Similarity=0.463  Sum_probs=24.6

Q ss_pred             eEEEEEecCcCCchhHHHHHHHHHhcc
Q psy4713           5 KLILLFSGKRKSGKDFLTDYLLERIGS   31 (103)
Q Consensus         5 klIiL~sGKrksGKDy~a~~l~~~l~~   31 (103)
                      ..+|+|+|-.||||--++..|++.++.
T Consensus        10 ~~~I~l~G~~GsGKST~~~~L~~~l~~   36 (212)
T 2wwf_A           10 GKFIVFEGLDRSGKSTQSKLLVEYLKN   36 (212)
T ss_dssp             SCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence            457899999999999999999999876

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=94.65  E-value=0.036  Score=40.68  Aligned_cols=30  Identities=17%  Similarity=0.325  Sum_probs=24.1

Q ss_pred             CCCCeEEEEEecCcCCchhHHHHHHHHHhcc
Q psy4713           1 MTQPKLILLFSGKRKSGKDFLTDYLLERIGS   31 (103)
Q Consensus         1 ~~~pklIiL~sGKrksGKDy~a~~l~~~l~~   31 (103)
                      |..|. +|+|+|-.||||-.++..|.+.|..
T Consensus         1 M~~~~-lIvl~G~pGSGKSTla~~La~~L~~   30 (260)
T 3a4m_A            1 MGDIM-LIILTGLPGVGKSTFSKNLAKILSK   30 (260)
T ss_dssp             --CCE-EEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             CCCCE-EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence            55554 6889999999999999999998654

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=94.62  E-value=0.047  Score=37.26  Aligned_cols=29  Identities=17%  Similarity=0.342  Sum_probs=25.5

Q ss_pred             CCeEEEEEecCcCCchhHHHHHHHHHhcc
Q psy4713           3 QPKLILLFSGKRKSGKDFLTDYLLERIGS   31 (103)
Q Consensus         3 ~pklIiL~sGKrksGKDy~a~~l~~~l~~   31 (103)
                      .+..+|+|+|..||||--++..|...++.
T Consensus        11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~~   39 (186)
T 2yvu_A           11 EKGIVVWLTGLPGSGKTTIATRLADLLQK   39 (186)
T ss_dssp             SCCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence            35578889999999999999999999875

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=94.55  E-value=0.036  Score=38.82  Aligned_cols=34  Identities=24%  Similarity=0.425  Sum_probs=26.0

Q ss_pred             CCCCeEEEEEecCcCCchhHHHHHHHHHhcccceEEEec
Q psy4713           1 MTQPKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRL   39 (103)
Q Consensus         1 ~~~pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~i   39 (103)
                      |.+| .+|.|+|-.||||--++..|.. +|   +.++..
T Consensus         1 M~~~-~~I~i~G~~GSGKST~~~~L~~-lg---~~~id~   34 (218)
T 1vht_A            1 MSLR-YIVALTGGIGSGKSTVANAFAD-LG---INVIDA   34 (218)
T ss_dssp             -CCC-EEEEEECCTTSCHHHHHHHHHH-TT---CEEEEH
T ss_pred             CCCc-eEEEEECCCCCCHHHHHHHHHH-cC---CEEEEc
Confidence            5544 7889999999999999999987 65   344443

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=94.52  E-value=0.021  Score=38.21  Aligned_cols=23  Identities=17%  Similarity=0.144  Sum_probs=21.0

Q ss_pred             EEEecCcCCchhHHHHHHHHHhc
Q psy4713           8 LLFSGKRKSGKDFLTDYLLERIG   30 (103)
Q Consensus         8 iL~sGKrksGKDy~a~~l~~~l~   30 (103)
                      |||+|++|+||..+|..++....
T Consensus        27 vll~G~~GtGKt~lA~~i~~~~~   49 (145)
T 3n70_A           27 VWLYGAPGTGRMTGARYLHQFGR   49 (145)
T ss_dssp             EEEESSTTSSHHHHHHHHHHSST
T ss_pred             EEEECCCCCCHHHHHHHHHHhCC
Confidence            78999999999999999998764

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=94.50  E-value=0.052  Score=39.62  Aligned_cols=54  Identities=26%  Similarity=0.342  Sum_probs=37.7

Q ss_pred             eEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHHHcCccHHHhcCCC
Q psy4713           5 KLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQNGLEMDKLLGAT   62 (103)
Q Consensus         5 klIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~~~glDl~~LL~d~   62 (103)
                      -.+|+|.|-.||||.-+++.|.+.|......++....|--....+    -+.+++.++
T Consensus         6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~~~p~~~~~g~----~i~~~l~~~   59 (213)
T 4edh_A            6 GLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTREPGGTPLAE----RIRELLLAP   59 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEESSCSSHHHH----HHHHHHHSC
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCHHHH----HHHHHHhcC
Confidence            467889999999999999999999987444555555664333322    445555544

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=94.50  E-value=0.037  Score=37.77  Aligned_cols=40  Identities=30%  Similarity=0.434  Sum_probs=29.3

Q ss_pred             CCCCeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhh
Q psy4713           1 MTQPKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPI   43 (103)
Q Consensus         1 ~~~pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~pi   43 (103)
                      |..+ .+|+|+|-.||||-=++..|++.++..  .++.++.|+
T Consensus         1 m~~~-~~I~l~G~~GsGKsT~~~~L~~~l~g~--~~~~~~~~~   40 (204)
T 2v54_A            1 MSRG-ALIVFEGLDKSGKTTQCMNIMESIPAN--TIKYLNFPQ   40 (204)
T ss_dssp             CCCC-CEEEEECCTTSSHHHHHHHHHHTSCGG--GEEEEESSC
T ss_pred             CCCC-cEEEEEcCCCCCHHHHHHHHHHHHCCC--ceEEEecCC
Confidence            5544 567899999999999999999998322  234445554

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=94.50  E-value=0.024  Score=39.64  Aligned_cols=27  Identities=22%  Similarity=0.213  Sum_probs=23.0

Q ss_pred             CeEEEEEecCcCCchhHHHHHHHHHhc
Q psy4713           4 PKLILLFSGKRKSGKDFLTDYLLERIG   30 (103)
Q Consensus         4 pklIiL~sGKrksGKDy~a~~l~~~l~   30 (103)
                      +..+|+|+|.+||||.-+++.|.+.+.
T Consensus        11 ~~~~i~l~G~sGsGKsTl~~~L~~~~~   37 (204)
T 2qor_A           11 RIPPLVVCGPSGVGKGTLIKKVLSEFP   37 (204)
T ss_dssp             CCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence            334677899999999999999999884

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=94.38  E-value=0.069  Score=36.80  Aligned_cols=38  Identities=16%  Similarity=0.336  Sum_probs=30.0

Q ss_pred             eEEEEEecCcCCchhHHHHHHHHH-hcccceEEEecchhhHH
Q psy4713           5 KLILLFSGKRKSGKDFLTDYLLER-IGSQHCAIIRLSAPIKS   45 (103)
Q Consensus         5 klIiL~sGKrksGKDy~a~~l~~~-l~~~~~~iv~iS~piK~   45 (103)
                      ..+|+++|-.||||--++..|++. ++   +.++...+-+.+
T Consensus        10 ~~~I~l~G~~GsGKSTv~~~La~~l~g---~~~id~d~~~~~   48 (184)
T 1y63_A           10 GINILITGTPGTGKTSMAEMIAAELDG---FQHLEVGKLVKE   48 (184)
T ss_dssp             SCEEEEECSTTSSHHHHHHHHHHHSTT---EEEEEHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhcCC---CEEeeHHHHHHH
Confidence            457889999999999999999998 54   666666655444

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=94.26  E-value=0.033  Score=37.70  Aligned_cols=46  Identities=17%  Similarity=0.251  Sum_probs=32.4

Q ss_pred             EEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHHHcCccHHHhc
Q psy4713           7 ILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQNGLEMDKLL   59 (103)
Q Consensus         7 IiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~~~glDl~~LL   59 (103)
                      +|+|+|.+||||--++..|++.++   +..+....-+    .+..|.++..++
T Consensus         6 ~i~i~G~~GsGKsTla~~La~~l~---~~~~d~d~~~----~~~~g~~~~~~~   51 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAKDLD---LVFLDSDFLI----EQKFNQKVSEIF   51 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHHT---CEEEEHHHHH----HHHHTSCHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHcC---CCEEcccHHH----HHHcCCCHHHHH
Confidence            578899999999999999999986   4455533222    233566665544

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=94.16  E-value=0.043  Score=39.51  Aligned_cols=27  Identities=22%  Similarity=0.282  Sum_probs=23.4

Q ss_pred             EEEEEecCcCCchhHHHHHHHHHhccc
Q psy4713           6 LILLFSGKRKSGKDFLTDYLLERIGSQ   32 (103)
Q Consensus         6 lIiL~sGKrksGKDy~a~~l~~~l~~~   32 (103)
                      .-|||+|++|+||-.++..+...+...
T Consensus        30 ~~vll~G~~GtGKt~la~~i~~~~~~~   56 (265)
T 2bjv_A           30 KPVLIIGERGTGKELIASRLHYLSSRW   56 (265)
T ss_dssp             SCEEEECCTTSCHHHHHHHHHHTSTTT
T ss_pred             CCEEEECCCCCcHHHHHHHHHHhcCcc
Confidence            357899999999999999999987643

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=94.09  E-value=0.059  Score=36.33  Aligned_cols=39  Identities=15%  Similarity=0.262  Sum_probs=29.2

Q ss_pred             CeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHH
Q psy4713           4 PKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKS   45 (103)
Q Consensus         4 pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~   45 (103)
                      +..+|+|+|-.||||--++..|++.++   ..+++..+-+.+
T Consensus         3 ~g~~I~l~G~~GsGKST~~~~La~~l~---~~~i~~d~~~~~   41 (186)
T 3cm0_A            3 VGQAVIFLGPPGAGKGTQASRLAQELG---FKKLSTGDILRD   41 (186)
T ss_dssp             CEEEEEEECCTTSCHHHHHHHHHHHHT---CEEECHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhC---CeEecHHHHHHH
Confidence            345788999999999999999999886   445554444433

>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1

Probab=94.09  E-value=0.053  Score=43.04  Aligned_cols=57  Identities=23%  Similarity=0.341  Sum_probs=47.0

Q ss_pred             EEEEEecCcCCchhHHHHHHHHHhcc--cceEEEecchhhHHHHHHHcCccHHHhcCCC
Q psy4713           6 LILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIRLSAPIKSHWAKQNGLEMDKLLGAT   62 (103)
Q Consensus         6 lIiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~iS~piK~~yA~~~glDl~~LL~d~   62 (103)
                      -+++|.|..+|||-.++..+...+..  ..|..++...+....|+...|+|+++|+-..
T Consensus        75 ~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~  133 (366)
T 1xp8_A           75 RITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQ  133 (366)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEEC
T ss_pred             cEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeec
Confidence            36777999999999999887766532  5788999999988999999999999876443

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=94.09  E-value=0.045  Score=39.09  Aligned_cols=54  Identities=17%  Similarity=0.233  Sum_probs=37.2

Q ss_pred             EEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHH--HcCccHHHhcCCCC
Q psy4713           7 ILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAK--QNGLEMDKLLGATK   63 (103)
Q Consensus         7 IiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~--~~glDl~~LL~d~~   63 (103)
                      +|+|+|-.||||--++..|++.++   ..+++..+-+++....  ..|-.+.+++.++.
T Consensus         2 ~I~l~G~~GsGKsT~a~~La~~lg---~~~i~~dd~~r~~~~~~~~~g~~i~~~~~~g~   57 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVKDKYS---LAHIESGGIFREHIGGGTELGKKAKEFIDRGD   57 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHT---CEEEEHHHHHHHHTTTTCHHHHHHHHHHTTTC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC---CeEEchHHHHHHHHHcCCHHHHHHHHHHHcCC
Confidence            689999999999999999999986   4667775555554221  12334555555543

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=93.97  E-value=0.059  Score=42.19  Aligned_cols=57  Identities=21%  Similarity=0.282  Sum_probs=46.5

Q ss_pred             eEEEEEecCcCCchhHHHHHHHHHhcc--cceEEEecchhhHHHHHHHcCccHHHhcCC
Q psy4713           5 KLILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIRLSAPIKSHWAKQNGLEMDKLLGA   61 (103)
Q Consensus         5 klIiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~iS~piK~~yA~~~glDl~~LL~d   61 (103)
                      --|++|.|..||||=-++..+...+..  ..|..++...+....+|+..|.|+++++-.
T Consensus        61 G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~  119 (349)
T 2zr9_A           61 GRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVS  119 (349)
T ss_dssp             TSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEe
Confidence            347899999999999998888765533  578888988888888999999999887633

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=93.94  E-value=0.064  Score=36.86  Aligned_cols=35  Identities=17%  Similarity=0.284  Sum_probs=26.9

Q ss_pred             EEEEEecCcCCchhHHHHHHHHHhccc--ceEEEecc
Q psy4713           6 LILLFSGKRKSGKDFLTDYLLERIGSQ--HCAIIRLS   40 (103)
Q Consensus         6 lIiL~sGKrksGKDy~a~~l~~~l~~~--~~~iv~iS   40 (103)
                      ..++|+|..|+||-+++..+...+...  .+..+..+
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~   91 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVP   91 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhH
Confidence            567899999999999999999988653  33344444

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=93.93  E-value=0.036  Score=40.23  Aligned_cols=23  Identities=26%  Similarity=0.397  Sum_probs=20.4

Q ss_pred             EEEecCcCCchhHHHHHHHHHhc
Q psy4713           8 LLFSGKRKSGKDFLTDYLLERIG   30 (103)
Q Consensus         8 iL~sGKrksGKDy~a~~l~~~l~   30 (103)
                      |+|+|.+|||||=+.+.|.+.+.
T Consensus         4 IVi~GPSG~GK~Tl~~~L~~~~~   26 (186)
T 1ex7_A            4 IVISGPSGTGKSTLLKKLFAEYP   26 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHCT
T ss_pred             EEEECCCCCCHHHHHHHHHHhCC
Confidence            67899999999999999988763

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=93.86  E-value=0.067  Score=36.59  Aligned_cols=37  Identities=22%  Similarity=0.230  Sum_probs=28.7

Q ss_pred             eEEEEEecCcCCchhHHHHHHHHHhcc--cceEEEecch
Q psy4713           5 KLILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIRLSA   41 (103)
Q Consensus         5 klIiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~iS~   41 (103)
                      .-.++|+|.+|+||-.++..+...+..  ..+..+..++
T Consensus        52 ~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~   90 (242)
T 3bos_A           52 VQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGI   90 (242)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHH
Confidence            456889999999999999999998875  3445555544

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=93.83  E-value=0.051  Score=37.82  Aligned_cols=29  Identities=24%  Similarity=0.218  Sum_probs=25.7

Q ss_pred             CCCeEEEEEecCcCCchhHHHHHHHHHhc
Q psy4713           2 TQPKLILLFSGKRKSGKDFLTDYLLERIG   30 (103)
Q Consensus         2 ~~pklIiL~sGKrksGKDy~a~~l~~~l~   30 (103)
                      ..+.-+|.|+|.+||||--++..|...+.
T Consensus        22 ~~~g~~i~l~G~sGsGKSTl~~~La~~l~   50 (200)
T 3uie_A           22 DQKGCVIWVTGLSGSGKSTLACALNQMLY   50 (200)
T ss_dssp             TSCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            35667899999999999999999999985

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=93.78  E-value=0.067  Score=40.09  Aligned_cols=28  Identities=29%  Similarity=0.543  Sum_probs=24.7

Q ss_pred             CCeEEEEEecCcCCchhHHHHHHHHHhc
Q psy4713           3 QPKLILLFSGKRKSGKDFLTDYLLERIG   30 (103)
Q Consensus         3 ~pklIiL~sGKrksGKDy~a~~l~~~l~   30 (103)
                      ++...+||.|.+|+||=+++..+++.++
T Consensus        34 ~~p~~lLl~GppGtGKT~la~aiA~~l~   61 (293)
T 3t15_A           34 KVPLILGIWGGKGQGKSFQCELVFRKMG   61 (293)
T ss_dssp             CCCSEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            3456788899999999999999999986

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=93.68  E-value=0.041  Score=38.30  Aligned_cols=38  Identities=11%  Similarity=0.238  Sum_probs=30.0

Q ss_pred             eEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHH
Q psy4713           5 KLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKS   45 (103)
Q Consensus         5 klIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~   45 (103)
                      +.+|.|+|..||||-.++..|.+.+|   +.++....-++.
T Consensus         3 ~~~i~i~G~~gsGkst~~~~l~~~~g---~~~~~~d~~~~~   40 (219)
T 2h92_A            3 AINIALDGPAAAGKSTIAKRVASELS---MIYVDTGAMYRA   40 (219)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHTT---CEEEEHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhcC---CceecCChHHHH
Confidence            46889999999999999999999986   455665544443

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=93.67  E-value=0.099  Score=39.13  Aligned_cols=35  Identities=26%  Similarity=0.285  Sum_probs=27.7

Q ss_pred             CeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchh
Q psy4713           4 PKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAP   42 (103)
Q Consensus         4 pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~p   42 (103)
                      ...+|.|+|-.||||..++..|+ .+|   +.+++..+-
T Consensus        74 ~~~iI~I~G~~GSGKSTva~~La-~lg---~~~id~D~~  108 (281)
T 2f6r_A           74 GLYVLGLTGISGSGKSSVAQRLK-NLG---AYIIDSDHL  108 (281)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHH-HHT---CEEEEHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHH-HCC---CcEEehhHH
Confidence            35789999999999999999999 454   556665443

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=93.66  E-value=0.066  Score=35.61  Aligned_cols=24  Identities=33%  Similarity=0.340  Sum_probs=21.8

Q ss_pred             EEEecCcCCchhHHHHHHHHHhcc
Q psy4713           8 LLFSGKRKSGKDFLTDYLLERIGS   31 (103)
Q Consensus         8 iL~sGKrksGKDy~a~~l~~~l~~   31 (103)
                      ++|+|.+|+||-.++..+.+.+..
T Consensus        41 ~ll~G~~G~GKT~l~~~l~~~~~~   64 (226)
T 2chg_A           41 LLFSGPPGTGKTATAIALARDLFG   64 (226)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHHG
T ss_pred             EEEECCCCCCHHHHHHHHHHHHhc
Confidence            899999999999999999988743

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=93.65  E-value=0.046  Score=36.45  Aligned_cols=29  Identities=17%  Similarity=0.324  Sum_probs=23.6

Q ss_pred             CCCCeEEEEEecCcCCchhHHHHHHHHHhc
Q psy4713           1 MTQPKLILLFSGKRKSGKDFLTDYLLERIG   30 (103)
Q Consensus         1 ~~~pklIiL~sGKrksGKDy~a~~l~~~l~   30 (103)
                      |.++ .+|+|+|.+||||--++..|...++
T Consensus         1 m~~~-~~i~l~G~~GsGKSTl~~~La~~l~   29 (173)
T 1kag_A            1 MAEK-RNIFLVGPMGAGKSTIGRQLAQQLN   29 (173)
T ss_dssp             --CC-CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred             CCCC-CeEEEECCCCCCHHHHHHHHHHHhC
Confidence            4443 4688999999999999999999986

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=93.58  E-value=0.14  Score=37.30  Aligned_cols=53  Identities=21%  Similarity=0.272  Sum_probs=38.5

Q ss_pred             EEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHHHc--CccHHHhcCCC
Q psy4713           7 ILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQN--GLEMDKLLGAT   62 (103)
Q Consensus         7 IiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~~~--glDl~~LL~d~   62 (103)
                      ||+|-|..||||.-.|..|++.++   ..-||..+-++++-+..+  |...+..+..|
T Consensus         2 ~Iil~GpPGsGKgTqa~~La~~~g---~~~istGdllR~~i~~~t~lg~~~~~~~~~G   56 (206)
T 3sr0_A            2 ILVFLGPPGAGKGTQAKRLAKEKG---FVHISTGDILREAVQKGTPLGKKAKEYMERG   56 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHC---CEEEEHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHC---CeEEcHHHHHHHHHHhcChhhhhHHHHHhcC
Confidence            688889999999999999999985   566777777777665532  33444444433

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=93.57  E-value=0.093  Score=36.72  Aligned_cols=36  Identities=22%  Similarity=0.367  Sum_probs=28.2

Q ss_pred             CCeEEEEEecCcCCchhHHHHHHHHHhcc--cceEEEe
Q psy4713           3 QPKLILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIR   38 (103)
Q Consensus         3 ~pklIiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~   38 (103)
                      .+..||.|+|.+||||--++..|...+..  ..+.+++
T Consensus        20 ~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~   57 (201)
T 1rz3_A           20 AGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFH   57 (201)
T ss_dssp             SSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEec
Confidence            35679999999999999999999998853  3344443

>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*

Probab=93.54  E-value=0.11  Score=42.82  Aligned_cols=40  Identities=13%  Similarity=0.292  Sum_probs=31.2

Q ss_pred             CCCeEEEEEecCcCCchhHHHHHHHHHhcc--cceEEEecch
Q psy4713           2 TQPKLILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIRLSA   41 (103)
Q Consensus         2 ~~pklIiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~iS~   41 (103)
                      +..+.+|++.|-.||||-+++..|+..++-  ..+.+++..+
T Consensus        32 ~~~~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~   73 (520)
T 2axn_A           32 TNSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGE   73 (520)
T ss_dssp             -CCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccH
Confidence            445678899999999999999999999864  3555666544

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=93.53  E-value=0.072  Score=37.64  Aligned_cols=53  Identities=19%  Similarity=0.317  Sum_probs=37.7

Q ss_pred             EEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHH--HcCccHHHhcCC
Q psy4713           6 LILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAK--QNGLEMDKLLGA   61 (103)
Q Consensus         6 lIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~--~~glDl~~LL~d   61 (103)
                      ..|+|+|-.||||--++..|++.++   ..+++..+-+.+....  ..|..+.+++.+
T Consensus         6 ~~I~l~G~~GsGKsT~a~~La~~l~---~~~i~~d~li~~~~~~~t~~g~~i~~~~~~   60 (217)
T 3be4_A            6 HNLILIGAPGSGKGTQCEFIKKEYG---LAHLSTGDMLREAIKNGTKIGLEAKSIIES   60 (217)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHHC---CEEEEHHHHHHHHHHTC--CCHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhC---ceEEehhHHHHHHHHcCCHHHHHHHHHHHC
Confidence            4688899999999999999999985   6677776666554332  134445555543

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=93.47  E-value=0.098  Score=39.44  Aligned_cols=27  Identities=26%  Similarity=0.380  Sum_probs=24.1

Q ss_pred             CeEEEEEecCcCCchhHHHHHHHHHhc
Q psy4713           4 PKLILLFSGKRKSGKDFLTDYLLERIG   30 (103)
Q Consensus         4 pklIiL~sGKrksGKDy~a~~l~~~l~   30 (103)
                      +..+|+|+|-+||||--++..|.+.+.
T Consensus        32 ~~~livl~G~sGsGKSTla~~L~~~~~   58 (287)
T 1gvn_B           32 SPTAFLLGGQPGSGKTSLRSAIFEETQ   58 (287)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHHHHTT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            457889999999999999999999874

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=93.45  E-value=0.065  Score=39.22  Aligned_cols=31  Identities=26%  Similarity=0.301  Sum_probs=26.9

Q ss_pred             CCCCeEEEEEecCcCCchhHHHHHHHHHhcc
Q psy4713           1 MTQPKLILLFSGKRKSGKDFLTDYLLERIGS   31 (103)
Q Consensus         1 ~~~pklIiL~sGKrksGKDy~a~~l~~~l~~   31 (103)
                      |+++..+|.|+|.+||||-=++..|.++||-
T Consensus        23 m~~~g~~I~I~G~~GsGKSTl~k~La~~Lg~   53 (252)
T 4e22_A           23 MTAIAPVITVDGPSGAGKGTLCKALAESLNW   53 (252)
T ss_dssp             CTTTSCEEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred             cCCCCcEEEEECCCCCCHHHHHHHHHHhcCC
Confidence            4456678999999999999999999999873

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=93.28  E-value=0.045  Score=36.72  Aligned_cols=26  Identities=27%  Similarity=0.333  Sum_probs=19.6

Q ss_pred             EEEEEecCcCCchhHHHHHHHHHhcc
Q psy4713           6 LILLFSGKRKSGKDFLTDYLLERIGS   31 (103)
Q Consensus         6 lIiL~sGKrksGKDy~a~~l~~~l~~   31 (103)
                      .+|+|+|-.||||--++..|++.++.
T Consensus         6 ~~I~l~G~~GsGKST~a~~La~~l~~   31 (183)
T 2vli_A            6 PIIWINGPFGVGKTHTAHTLHERLPG   31 (183)
T ss_dssp             CEEEEECCC----CHHHHHHHHHSTT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhcCC
Confidence            47889999999999999999999873

>3rhf_A Putative polyphosphate kinase 2 family protein; PSI-biology, MCSG, structural genomics, midwest center for S genomics; HET: PGE FLC PG4; 2.45A {Arthrobacter aurescens}

Probab=93.14  E-value=0.13  Score=40.81  Aligned_cols=46  Identities=15%  Similarity=0.303  Sum_probs=42.4

Q ss_pred             CCeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHH
Q psy4713           3 QPKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWA   48 (103)
Q Consensus         3 ~pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA   48 (103)
                      ..++||+|-|=-+||||=+.+.+.+.+....++|+.++.|+-+|-+
T Consensus        73 ~~~vlIvfEG~DaAGKgg~Ik~l~~~ldPRg~~V~a~~~Pt~eE~~  118 (289)
T 3rhf_A           73 PKRLLLILQAMDTAGKGGIVSHVVGAMDPQGVQLTAFKAPTDEEKS  118 (289)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHHHSCGGGEEEEECCSCCHHHHT
T ss_pred             CCcEEEEEECCCCCChHHHHHHHHHhcCcCceEEEECCCCChhhhc
Confidence            3689999999999999999999999999999999999999988744

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=93.11  E-value=0.075  Score=35.18  Aligned_cols=36  Identities=19%  Similarity=0.116  Sum_probs=26.8

Q ss_pred             EEEEEecCcCCchhHHHHHHHH-HhcccceEEEecchhhHH
Q psy4713           6 LILLFSGKRKSGKDFLTDYLLE-RIGSQHCAIIRLSAPIKS   45 (103)
Q Consensus         6 lIiL~sGKrksGKDy~a~~l~~-~l~~~~~~iv~iS~piK~   45 (103)
                      .+|+|+|-+||||--++..|.+ .+   ...+++. +.+.+
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~~~~---~~~~i~~-d~~r~   39 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIAKNP---GFYNINR-DDYRQ   39 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHST---TEEEECH-HHHHH
T ss_pred             eEEEEecCCCCCHHHHHHHHHhhcC---CcEEecH-HHHHH
Confidence            5788999999999999999998 33   3455553 44443

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=93.04  E-value=0.12  Score=38.61  Aligned_cols=36  Identities=25%  Similarity=0.442  Sum_probs=28.8

Q ss_pred             CeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchh
Q psy4713           4 PKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAP   42 (103)
Q Consensus         4 pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~p   42 (103)
                      |.-.|||.|.+|+||-.++..++..++   +..+.++.+
T Consensus        48 ~~~~vLL~Gp~GtGKT~la~ala~~~~---~~~i~v~~~   83 (301)
T 3cf0_A           48 PSKGVLFYGPPGCGKTLLAKAIANECQ---ANFISIKGP   83 (301)
T ss_dssp             CCSEEEEECSSSSSHHHHHHHHHHHTT---CEEEEECHH
T ss_pred             CCceEEEECCCCcCHHHHHHHHHHHhC---CCEEEEEhH
Confidence            445689999999999999999999875   455666643

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=92.92  E-value=0.059  Score=37.00  Aligned_cols=25  Identities=20%  Similarity=0.317  Sum_probs=23.3

Q ss_pred             EEEEecCcCCchhHHHHHHHHHhcc
Q psy4713           7 ILLFSGKRKSGKDFLTDYLLERIGS   31 (103)
Q Consensus         7 IiL~sGKrksGKDy~a~~l~~~l~~   31 (103)
                      +|+|+|-+||||--+++.|.+.++.
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~~l~~   26 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSGAFRA   26 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence            7899999999999999999999975

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=92.70  E-value=0.098  Score=34.93  Aligned_cols=25  Identities=32%  Similarity=0.509  Sum_probs=22.7

Q ss_pred             EEEEecCcCCchhHHHHHHHHHhcc
Q psy4713           7 ILLFSGKRKSGKDFLTDYLLERIGS   31 (103)
Q Consensus         7 IiL~sGKrksGKDy~a~~l~~~l~~   31 (103)
                      +++|+|.+|+||-.++..+.+.+..
T Consensus        47 ~~ll~G~~G~GKT~l~~~~~~~~~~   71 (250)
T 1njg_A           47 AYLFSGTRGVGKTSIARLLAKGLNC   71 (250)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhcC
Confidence            7899999999999999999988754

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=92.65  E-value=0.1  Score=35.88  Aligned_cols=32  Identities=16%  Similarity=0.293  Sum_probs=26.2

Q ss_pred             EEEEecCcCCchhHHHHHHHHHhcccceEEEecchh
Q psy4713           7 ILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAP   42 (103)
Q Consensus         7 IiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~p   42 (103)
                      +|.|+|..||||--++..|+. +|   +.++...+-
T Consensus         3 ~i~i~G~~GsGKSTl~~~L~~-~g---~~~i~~d~~   34 (204)
T 2if2_A            3 RIGLTGNIGCGKSTVAQMFRE-LG---AYVLDADKL   34 (204)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH-TT---CEEEEHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHH-CC---CEEEEccHH
Confidence            789999999999999999999 74   556655443

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=92.60  E-value=0.16  Score=40.49  Aligned_cols=30  Identities=23%  Similarity=0.375  Sum_probs=25.8

Q ss_pred             EEEEEecCcCCchhHHHHHHHHHhcccceEEEe
Q psy4713           6 LILLFSGKRKSGKDFLTDYLLERIGSQHCAIIR   38 (103)
Q Consensus         6 lIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~   38 (103)
                      .+|+|+|.++|||--++..|++.++   +.||+
T Consensus         8 ~lI~I~GptgSGKTtla~~La~~l~---~~iis   37 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAKKFN---GEIIS   37 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHTT---EEEEE
T ss_pred             ceEEEECCCcCcHHHHHHHHHHHcC---Cceec
Confidence            5889999999999999999999986   44444

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=92.59  E-value=0.083  Score=36.62  Aligned_cols=36  Identities=28%  Similarity=0.476  Sum_probs=27.7

Q ss_pred             CCeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecc
Q psy4713           3 QPKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLS   40 (103)
Q Consensus         3 ~pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS   40 (103)
                      ++..+|.|+|.+||||--+++.|...+.  .+.++...
T Consensus        19 ~~~~~i~i~G~~GsGKSTl~~~L~~~~~--~~~~i~~D   54 (207)
T 2qt1_A           19 SKTFIIGISGVTNSGKTTLAKNLQKHLP--NCSVISQD   54 (207)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHTTST--TEEEEEGG
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHhcC--CcEEEeCC
Confidence            3567899999999999999999998763  34444433

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=92.41  E-value=0.14  Score=37.13  Aligned_cols=27  Identities=26%  Similarity=0.332  Sum_probs=23.8

Q ss_pred             CeEEEEEecCcCCchhHHHHHHHHHhc
Q psy4713           4 PKLILLFSGKRKSGKDFLTDYLLERIG   30 (103)
Q Consensus         4 pklIiL~sGKrksGKDy~a~~l~~~l~   30 (103)
                      |.--+||+|.+|+||-.++..+...++
T Consensus        53 ~~~~vll~Gp~GtGKT~la~~la~~~~   79 (297)
T 3b9p_A           53 PAKGLLLFGPPGNGKTLLARAVATECS   79 (297)
T ss_dssp             CCSEEEEESSSSSCHHHHHHHHHHHTT
T ss_pred             CCCeEEEECcCCCCHHHHHHHHHHHhC
Confidence            445789999999999999999999875

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=92.33  E-value=0.2  Score=34.71  Aligned_cols=48  Identities=17%  Similarity=0.258  Sum_probs=34.3

Q ss_pred             eEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHHHcCccHHHhc
Q psy4713           5 KLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQNGLEMDKLL   59 (103)
Q Consensus         5 klIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~~~glDl~~LL   59 (103)
                      .-+|+|+|-+||||--++..|+..++   ...+...+.+.+    ..|..+.+++
T Consensus        25 ~~~i~l~G~~GsGKsTl~~~La~~l~---~~~i~~d~~~~~----~~g~~i~~~~   72 (199)
T 3vaa_A           25 MVRIFLTGYMGAGKTTLGKAFARKLN---VPFIDLDWYIEE----RFHKTVGELF   72 (199)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHT---CCEEEHHHHHHH----HHTSCHHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHcC---CCEEcchHHHHH----HhCCcHHHHH
Confidence            34778899999999999999999985   455666555443    2355555543

>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*

Probab=92.33  E-value=0.21  Score=36.88  Aligned_cols=38  Identities=18%  Similarity=0.505  Sum_probs=31.1

Q ss_pred             CCCCeEEEEEecCcCCchhHHHHHHHHHhcccceEEEec
Q psy4713           1 MTQPKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRL   39 (103)
Q Consensus         1 ~~~pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~i   39 (103)
                      |+++-.+|+|.|-.||||.-.++.|.+.++. .+.+++.
T Consensus         1 ~m~~g~~i~~eG~~g~GKst~~~~l~~~l~~-~~~~~~e   38 (216)
T 3tmk_A            1 MMGRGKLILIEGLDRTGKTTQCNILYKKLQP-NCKLLKF   38 (216)
T ss_dssp             CCCCCCEEEEEECSSSSHHHHHHHHHHHHCS-SEEEEES
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHHHhcc-cceEEEe
Confidence            5666678889999999999999999999986 4445553

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=92.25  E-value=0.18  Score=39.94  Aligned_cols=36  Identities=22%  Similarity=0.396  Sum_probs=28.0

Q ss_pred             CCCCeEEEEEecCcCCchhHHHHHHHHHhcccceEEEec
Q psy4713           1 MTQPKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRL   39 (103)
Q Consensus         1 ~~~pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~i   39 (103)
                      |++.+.+|+|+|.+||||--++..|++.++   +.+++.
T Consensus         1 ~~~m~~~i~i~GptGsGKTtla~~La~~l~---~~iis~   36 (323)
T 3crm_A            1 MSSLPPAIFLMGPTAAGKTDLAMALADALP---CELISV   36 (323)
T ss_dssp             --CCCEEEEEECCTTSCHHHHHHHHHHHSC---EEEEEE
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHHHHcC---CcEEec
Confidence            555556889999999999999999999986   455554

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=92.15  E-value=0.15  Score=37.06  Aligned_cols=28  Identities=21%  Similarity=0.350  Sum_probs=24.3

Q ss_pred             CeEEEEEecCcCCchhHHHHHHHHHhcc
Q psy4713           4 PKLILLFSGKRKSGKDFLTDYLLERIGS   31 (103)
Q Consensus         4 pklIiL~sGKrksGKDy~a~~l~~~l~~   31 (103)
                      +..-+||+|.+|+||-.++..+.+.+..
T Consensus        66 ~~~~vll~G~~GtGKT~la~~la~~l~~   93 (309)
T 3syl_A           66 PTLHMSFTGNPGTGKTTVALKMAGLLHR   93 (309)
T ss_dssp             CCCEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHHHh
Confidence            4456899999999999999999988854

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=92.06  E-value=0.11  Score=35.35  Aligned_cols=26  Identities=23%  Similarity=0.400  Sum_probs=23.1

Q ss_pred             CeEEEEEecCcCCchhHHHHHHHHHh
Q psy4713           4 PKLILLFSGKRKSGKDFLTDYLLERI   29 (103)
Q Consensus         4 pklIiL~sGKrksGKDy~a~~l~~~l   29 (103)
                      +.-+|.|+|.+||||.-++..|...+
T Consensus         5 ~g~~i~l~G~~GsGKSTl~~~L~~~~   30 (207)
T 2j41_A            5 KGLLIVLSGPSGVGKGTVRKRIFEDP   30 (207)
T ss_dssp             CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence            34578899999999999999999887

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=92.02  E-value=0.16  Score=40.48  Aligned_cols=60  Identities=22%  Similarity=0.251  Sum_probs=47.6

Q ss_pred             CeEEEEEecCcCCchhHHHHHHHHHhcc--cceEEEecchhhHHHHHHHcCccHHHhcCCCC
Q psy4713           4 PKLILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIRLSAPIKSHWAKQNGLEMDKLLGATK   63 (103)
Q Consensus         4 pklIiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~iS~piK~~yA~~~glDl~~LL~d~~   63 (103)
                      |--|++|.|..||||--++..+...+..  ..|..+...++....+|+..|+|+++++-..+
T Consensus        60 ~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~  121 (356)
T 3hr8_A           60 RGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQP  121 (356)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhc
Confidence            4458999999999999999888877643  45666777777777899999999998765544

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=91.97  E-value=0.19  Score=36.50  Aligned_cols=27  Identities=15%  Similarity=0.314  Sum_probs=24.3

Q ss_pred             CeEEEEEecCcCCchhHHHHHHHHHhc
Q psy4713           4 PKLILLFSGKRKSGKDFLTDYLLERIG   30 (103)
Q Consensus         4 pklIiL~sGKrksGKDy~a~~l~~~l~   30 (103)
                      +..+|+++|-+||||--++..|...++
T Consensus        31 ~~~~i~l~G~~GsGKSTla~~L~~~l~   57 (253)
T 2p5t_B           31 QPIAILLGGQSGAGKTTIHRIKQKEFQ   57 (253)
T ss_dssp             SCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence            346889999999999999999999986

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=91.86  E-value=0.43  Score=32.46  Aligned_cols=54  Identities=15%  Similarity=0.298  Sum_probs=36.7

Q ss_pred             EEEEEecCcCCchhHHHHHHHHHhcc--cceEEEecchhhHH--HHHHHcCccHHHhc
Q psy4713           6 LILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIRLSAPIKS--HWAKQNGLEMDKLL   59 (103)
Q Consensus         6 lIiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~iS~piK~--~yA~~~glDl~~LL   59 (103)
                      -+++|.|.+||||--++..+...+..  ..+.+++...+..+  ......|.+++.+.
T Consensus        24 ~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (235)
T 2w0m_A           24 FFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEESRDSIIRQAKQFNWDFEEYI   81 (235)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSSCHHHHHHHHHHTTCCCGGGB
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcccCHHHHHHHHHHhcchHHHHh
Confidence            47888999999999999888866533  45666665554332  22335677776653

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=91.85  E-value=0.15  Score=37.75  Aligned_cols=35  Identities=17%  Similarity=0.124  Sum_probs=26.6

Q ss_pred             EEEEEecCcCCchhHHHHHHHHHhcccceEEEecc
Q psy4713           6 LILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLS   40 (103)
Q Consensus         6 lIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS   40 (103)
                      ..++|+|.+|+||-.++..+...+......++.++
T Consensus        38 ~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~   72 (324)
T 1l8q_A           38 NPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSS   72 (324)
T ss_dssp             SSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence            45889999999999999999998854333444443

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=91.84  E-value=0.22  Score=35.10  Aligned_cols=26  Identities=19%  Similarity=0.169  Sum_probs=23.0

Q ss_pred             EEEEEecCcCCchhHHHHHHHHHhcc
Q psy4713           6 LILLFSGKRKSGKDFLTDYLLERIGS   31 (103)
Q Consensus         6 lIiL~sGKrksGKDy~a~~l~~~l~~   31 (103)
                      .-|||+|.+|+||-+++..+...++.
T Consensus        40 ~~vll~G~~GtGKT~la~~la~~~~~   65 (262)
T 2qz4_A           40 KGALLLGPPGCGKTLLAKAVATEAQV   65 (262)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHHHHTC
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHhCC
Confidence            45789999999999999999998863

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=91.84  E-value=0.23  Score=36.71  Aligned_cols=34  Identities=15%  Similarity=0.190  Sum_probs=28.2

Q ss_pred             EEEEecCcCCchhHHHHHHHHHhccc-ceEEEecc
Q psy4713           7 ILLFSGKRKSGKDFLTDYLLERIGSQ-HCAIIRLS   40 (103)
Q Consensus         7 IiL~sGKrksGKDy~a~~l~~~l~~~-~~~iv~iS   40 (103)
                      .++|+|.+|+||-.++..+...+... ...++.++
T Consensus        46 ~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~   80 (389)
T 1fnn_A           46 RATLLGRPGTGKTVTLRKLWELYKDKTTARFVYIN   80 (389)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEE
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEe
Confidence            78899999999999999999998654 45666665

>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}

Probab=91.81  E-value=0.24  Score=40.04  Aligned_cols=62  Identities=15%  Similarity=0.226  Sum_probs=46.6

Q ss_pred             EEEEecCcCCchhHHHHHHHHHhcc----cceEEEecchhhHHHHHHHcCccHHHhcCCCCc-HHHh
Q psy4713           7 ILLFSGKRKSGKDFLTDYLLERIGS----QHCAIIRLSAPIKSHWAKQNGLEMDKLLGATKY-KEKY   68 (103)
Q Consensus         7 IiL~sGKrksGKDy~a~~l~~~l~~----~~~~iv~iS~piK~~yA~~~glDl~~LL~d~~Y-KE~~   68 (103)
                      +++|.|..+|||--++-.+......    ..|.-|.--+++-..||+..|+|+++|+-..+. =|+-
T Consensus        30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~   96 (333)
T 3io5_A           30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQL   96 (333)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHH
Confidence            7899999999998887666555432    456667777777778999999999998766543 3443

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=91.70  E-value=0.16  Score=36.27  Aligned_cols=28  Identities=18%  Similarity=0.366  Sum_probs=25.0

Q ss_pred             CCeEEEEEecCcCCchhHHHHHHHHHhc
Q psy4713           3 QPKLILLFSGKRKSGKDFLTDYLLERIG   30 (103)
Q Consensus         3 ~pklIiL~sGKrksGKDy~a~~l~~~l~   30 (103)
                      .+..+|.|+|..||||--++..|...+|
T Consensus        14 ~~~~~i~i~G~~gsGKst~~~~l~~~lg   41 (236)
T 1q3t_A           14 MKTIQIAIDGPASSGKSTVAKIIAKDFG   41 (236)
T ss_dssp             CCCCEEEEECSSCSSHHHHHHHHHHHHC
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence            3556899999999999999999999886

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=91.68  E-value=0.15  Score=36.58  Aligned_cols=28  Identities=21%  Similarity=0.261  Sum_probs=24.3

Q ss_pred             CeEEEEEecCcCCchhHHHHHHHHHhcc
Q psy4713           4 PKLILLFSGKRKSGKDFLTDYLLERIGS   31 (103)
Q Consensus         4 pklIiL~sGKrksGKDy~a~~l~~~l~~   31 (103)
                      +.-+|+|.|.+||||--++..|.+.+|-
T Consensus        26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~   53 (246)
T 2bbw_A           26 KLLRAVILGPPGSGKGTVCQRIAQNFGL   53 (246)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            3457889999999999999999988874

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=91.67  E-value=0.15  Score=35.37  Aligned_cols=28  Identities=21%  Similarity=0.316  Sum_probs=24.5

Q ss_pred             CeEEEEEecCcCCchhHHHHHHHHHhcc
Q psy4713           4 PKLILLFSGKRKSGKDFLTDYLLERIGS   31 (103)
Q Consensus         4 pklIiL~sGKrksGKDy~a~~l~~~l~~   31 (103)
                      +.-+|+|+|.+||||-=++..|...+|.
T Consensus        28 ~g~~i~l~G~~GsGKSTl~~~L~~~~g~   55 (200)
T 4eun_A           28 PTRHVVVMGVSGSGKTTIAHGVADETGL   55 (200)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHHCC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHhhCC
Confidence            4567889999999999999999999863

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=91.61  E-value=0.16  Score=38.63  Aligned_cols=36  Identities=17%  Similarity=0.228  Sum_probs=27.4

Q ss_pred             eEEEEEecCcCCchhHHHHHHHHHhc-ccceEEEecc
Q psy4713           5 KLILLFSGKRKSGKDFLTDYLLERIG-SQHCAIIRLS   40 (103)
Q Consensus         5 klIiL~sGKrksGKDy~a~~l~~~l~-~~~~~iv~iS   40 (103)
                      .--|+|+|..|+||-+++..+...+. .....++-++
T Consensus       152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~  188 (308)
T 2qgz_A          152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLH  188 (308)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEE
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEE
Confidence            45678999999999999999999887 5334443333

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=91.55  E-value=0.21  Score=35.84  Aligned_cols=26  Identities=19%  Similarity=0.195  Sum_probs=23.0

Q ss_pred             EEEEEecCcCCchhHHHHHHHHHhcc
Q psy4713           6 LILLFSGKRKSGKDFLTDYLLERIGS   31 (103)
Q Consensus         6 lIiL~sGKrksGKDy~a~~l~~~l~~   31 (103)
                      .-+||+|.+|+||-.++..+.+.++.
T Consensus        51 ~~vll~G~~GtGKT~la~~la~~l~~   76 (310)
T 1ofh_A           51 KNILMIGPTGVGKTEIARRLAKLANA   76 (310)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHhCC
Confidence            35789999999999999999999853

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=91.40  E-value=0.25  Score=33.42  Aligned_cols=27  Identities=19%  Similarity=0.162  Sum_probs=23.6

Q ss_pred             CeEEEEEecCcCCchhHHHHHHHHHhc
Q psy4713           4 PKLILLFSGKRKSGKDFLTDYLLERIG   30 (103)
Q Consensus         4 pklIiL~sGKrksGKDy~a~~l~~~l~   30 (103)
                      +..+|.|+|-.||||--++..|...+.
T Consensus         4 ~g~~i~l~G~~GsGKST~~~~L~~~l~   30 (179)
T 2pez_A            4 RGCTVWLTGLSGAGKTTVSMALEEYLV   30 (179)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence            445778999999999999999999883

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=91.39  E-value=0.28  Score=37.34  Aligned_cols=40  Identities=20%  Similarity=0.330  Sum_probs=31.0

Q ss_pred             CCeEEEEEecCcCCchhHHHHHHHHHhccc-----ceEEEecchh
Q psy4713           3 QPKLILLFSGKRKSGKDFLTDYLLERIGSQ-----HCAIIRLSAP   42 (103)
Q Consensus         3 ~pklIiL~sGKrksGKDy~a~~l~~~l~~~-----~~~iv~iS~p   42 (103)
                      ++..||.|+|.+||||--++..|...+...     .+.+|+.-+-
T Consensus        29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f   73 (290)
T 1odf_A           29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDF   73 (290)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGG
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccc
Confidence            467899999999999999999999999752     3334366543

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=91.26  E-value=0.28  Score=36.79  Aligned_cols=35  Identities=20%  Similarity=0.381  Sum_probs=27.6

Q ss_pred             CeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecch
Q psy4713           4 PKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSA   41 (103)
Q Consensus         4 pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~   41 (103)
                      |..-|||+|.+|+||-.++..+.+.++   +.++.++.
T Consensus        50 ~~~~vLl~GppGtGKT~la~aia~~~~---~~~~~v~~   84 (322)
T 3eie_A           50 PTSGILLYGPPGTGKSYLAKAVATEAN---STFFSVSS   84 (322)
T ss_dssp             CCCEEEEECSSSSCHHHHHHHHHHHHT---CEEEEEEH
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHHC---CCEEEEch
Confidence            445689999999999999999999875   44555544

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=91.24  E-value=0.35  Score=34.92  Aligned_cols=29  Identities=28%  Similarity=0.375  Sum_probs=25.1

Q ss_pred             CCeEEEEEecCcCCchhHHHHHHHHHhcc
Q psy4713           3 QPKLILLFSGKRKSGKDFLTDYLLERIGS   31 (103)
Q Consensus         3 ~pklIiL~sGKrksGKDy~a~~l~~~l~~   31 (103)
                      .+..-+||+|.+|+||-.+|..++..++.
T Consensus        62 ~~~~~vLl~G~~GtGKT~la~~ia~~~~~   90 (272)
T 1d2n_A           62 TPLVSVLLEGPPHSGKTALAAKIAEESNF   90 (272)
T ss_dssp             CSEEEEEEECSTTSSHHHHHHHHHHHHTC
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHhCC
Confidence            35567899999999999999999998753

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=91.23  E-value=0.16  Score=34.88  Aligned_cols=26  Identities=15%  Similarity=0.362  Sum_probs=22.6

Q ss_pred             eEEEEEecCcCCchhHHHHHHHHHhc
Q psy4713           5 KLILLFSGKRKSGKDFLTDYLLERIG   30 (103)
Q Consensus         5 klIiL~sGKrksGKDy~a~~l~~~l~   30 (103)
                      .-+++|+|.+||||.=+++.|...+.
T Consensus         5 g~~i~i~GpsGsGKSTL~~~L~~~~~   30 (180)
T 1kgd_A            5 RKTLVLLGAHGVGRRHIKNTLITKHP   30 (180)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence            34789999999999999999988764

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=91.22  E-value=0.4  Score=37.53  Aligned_cols=39  Identities=15%  Similarity=0.208  Sum_probs=32.8

Q ss_pred             CCeEEEEEecCcCCchhHHHHHHHHHhcc----cceEEEecch
Q psy4713           3 QPKLILLFSGKRKSGKDFLTDYLLERIGS----QHCAIIRLSA   41 (103)
Q Consensus         3 ~pklIiL~sGKrksGKDy~a~~l~~~l~~----~~~~iv~iS~   41 (103)
                      .+.+||.|+|.+||||--++..|...+..    ..+.++++-+
T Consensus        90 ~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~  132 (321)
T 3tqc_A           90 KVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDG  132 (321)
T ss_dssp             CCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGG
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeecc
Confidence            45689999999999999999999999863    4677888765

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=91.21  E-value=0.26  Score=37.40  Aligned_cols=27  Identities=22%  Similarity=0.343  Sum_probs=23.5

Q ss_pred             CeEEEEEecCcCCchhHHHHHHHHHhc
Q psy4713           4 PKLILLFSGKRKSGKDFLTDYLLERIG   30 (103)
Q Consensus         4 pklIiL~sGKrksGKDy~a~~l~~~l~   30 (103)
                      |.--|||+|.+|+||-.++..++..+.
T Consensus        44 ~~~~iLL~GppGtGKT~la~ala~~~~   70 (322)
T 1xwi_A           44 PWRGILLFGPPGTGKSYLAKAVATEAN   70 (322)
T ss_dssp             CCSEEEEESSSSSCHHHHHHHHHHHTT
T ss_pred             CCceEEEECCCCccHHHHHHHHHHHcC
Confidence            445678899999999999999999983

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=91.20  E-value=0.18  Score=36.96  Aligned_cols=37  Identities=22%  Similarity=0.268  Sum_probs=29.2

Q ss_pred             eEEEEEecCcCCchhHHHHHHHHHhccc------ceEEEecch
Q psy4713           5 KLILLFSGKRKSGKDFLTDYLLERIGSQ------HCAIIRLSA   41 (103)
Q Consensus         5 klIiL~sGKrksGKDy~a~~l~~~l~~~------~~~iv~iS~   41 (103)
                      .-.++|+|.+|+||-.++..+.+.+...      .+.++.++.
T Consensus        44 ~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~   86 (387)
T 2v1u_A           44 PSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNA   86 (387)
T ss_dssp             CCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEET
T ss_pred             CCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEEC
Confidence            3468899999999999999999988432      566666663

>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}

Probab=91.13  E-value=0.12  Score=38.99  Aligned_cols=26  Identities=19%  Similarity=0.321  Sum_probs=22.4

Q ss_pred             EEEEEecCcCCchhHHHHHHHHHhcc
Q psy4713           6 LILLFSGKRKSGKDFLTDYLLERIGS   31 (103)
Q Consensus         6 lIiL~sGKrksGKDy~a~~l~~~l~~   31 (103)
                      .-|||+|++|+||..+|..++.....
T Consensus        26 ~~vLi~Ge~GtGKt~lAr~i~~~~~~   51 (304)
T 1ojl_A           26 ATVLIHGDSGTGKELVARALHACSAR   51 (304)
T ss_dssp             SCEEEESCTTSCHHHHHHHHHHHSSC
T ss_pred             CcEEEECCCCchHHHHHHHHHHhCcc
Confidence            35789999999999999999997643

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=91.11  E-value=0.039  Score=36.89  Aligned_cols=23  Identities=13%  Similarity=0.249  Sum_probs=20.5

Q ss_pred             EEEecCcCCchhHHHHHHHHHhc
Q psy4713           8 LLFSGKRKSGKDFLTDYLLERIG   30 (103)
Q Consensus         8 iL~sGKrksGKDy~a~~l~~~l~   30 (103)
                      |||+|++|+||-++|..+.....
T Consensus        30 vll~G~~GtGKt~lA~~i~~~~~   52 (143)
T 3co5_A           30 VFLTGEAGSPFETVARYFHKNGT   52 (143)
T ss_dssp             EEEEEETTCCHHHHHGGGCCTTS
T ss_pred             EEEECCCCccHHHHHHHHHHhCC
Confidence            78899999999999999887754

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=91.10  E-value=0.26  Score=33.34  Aligned_cols=39  Identities=23%  Similarity=0.120  Sum_probs=29.1

Q ss_pred             eEEEEEecCcCCchhHHHHHHHHHhcc---cceEEEecchhh
Q psy4713           5 KLILLFSGKRKSGKDFLTDYLLERIGS---QHCAIIRLSAPI   43 (103)
Q Consensus         5 klIiL~sGKrksGKDy~a~~l~~~l~~---~~~~iv~iS~pi   43 (103)
                      .-+++|.|.+||||=.++..+...+..   ..+..+..++-+
T Consensus        38 g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~   79 (180)
T 3ec2_A           38 GKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLI   79 (180)
T ss_dssp             CCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHH
Confidence            357889999999999999999988841   344555555443

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=91.09  E-value=0.22  Score=36.79  Aligned_cols=26  Identities=27%  Similarity=0.362  Sum_probs=23.1

Q ss_pred             EEEEEecCcCCchhHHHHHHHHHhcc
Q psy4713           6 LILLFSGKRKSGKDFLTDYLLERIGS   31 (103)
Q Consensus         6 lIiL~sGKrksGKDy~a~~l~~~l~~   31 (103)
                      --|||+|.+|+||-.++..+...++.
T Consensus        56 ~~vll~G~~GtGKT~la~~ia~~~~~   81 (338)
T 3pfi_A           56 DHILFSGPAGLGKTTLANIISYEMSA   81 (338)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred             CeEEEECcCCCCHHHHHHHHHHHhCC
Confidence            35799999999999999999998764

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=91.04  E-value=0.63  Score=31.68  Aligned_cols=55  Identities=20%  Similarity=0.236  Sum_probs=37.0

Q ss_pred             CeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecch--hhHH--HHHHHcCccHHHhc
Q psy4713           4 PKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSA--PIKS--HWAKQNGLEMDKLL   59 (103)
Q Consensus         4 pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~--piK~--~yA~~~glDl~~LL   59 (103)
                      +--+++|.|++||||=-++..+.. .....+..++...  +..+  +.++..|+|.++++
T Consensus        19 ~G~~~~i~G~~GsGKTtl~~~l~~-~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (220)
T 2cvh_A           19 PGVLTQVYGPYASGKTTLALQTGL-LSGKKVAYVDTEGGFSPERLVQMAETRGLNPEEAL   77 (220)
T ss_dssp             TTSEEEEECSTTSSHHHHHHHHHH-HHCSEEEEEESSCCCCHHHHHHHHHTTTCCHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH-HcCCcEEEEECCCCCCHHHHHHHHHhcCCChHHHh
Confidence            345889999999999999998887 2234566666554  3332  33456677766643

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=90.99  E-value=0.47  Score=32.81  Aligned_cols=55  Identities=16%  Similarity=0.143  Sum_probs=38.2

Q ss_pred             eEEEEEecCcCCchhHHHHHHHHHhcc--cceEEEecchhhHHH--HHHHcCccHHHhc
Q psy4713           5 KLILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIRLSAPIKSH--WAKQNGLEMDKLL   59 (103)
Q Consensus         5 klIiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~iS~piK~~--yA~~~glDl~~LL   59 (103)
                      .-+++|.|.+||||--++..+...+..  ..+..++...+..+-  .+...|.+++++.
T Consensus        23 G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~g~~~~~~~   81 (247)
T 2dr3_A           23 RNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEEHPVQVRQNMAQFGWDVKPYE   81 (247)
T ss_dssp             TCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSSCHHHHHHHHHTTTCCCHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccCCHHHHHHHHHHcCCCHHHHh
Confidence            347899999999999997766554432  467777777665432  3456788877653

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=90.97  E-value=0.23  Score=36.78  Aligned_cols=36  Identities=22%  Similarity=0.426  Sum_probs=28.8

Q ss_pred             EEEEEecCcCCchhHHHHHHHHHhccc--------ceEEEecch
Q psy4713           6 LILLFSGKRKSGKDFLTDYLLERIGSQ--------HCAIIRLSA   41 (103)
Q Consensus         6 lIiL~sGKrksGKDy~a~~l~~~l~~~--------~~~iv~iS~   41 (103)
                      -.++|+|.+|+||-.++..+.+.+...        .+.++.++.
T Consensus        46 ~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~   89 (384)
T 2qby_B           46 FSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNC   89 (384)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEH
T ss_pred             CcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEEC
Confidence            478999999999999999999987432        566666663

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=90.97  E-value=0.2  Score=36.62  Aligned_cols=37  Identities=11%  Similarity=0.286  Sum_probs=29.1

Q ss_pred             eEEEEEecCcCCchhHHHHHHHHHhccc---ceEEEecch
Q psy4713           5 KLILLFSGKRKSGKDFLTDYLLERIGSQ---HCAIIRLSA   41 (103)
Q Consensus         5 klIiL~sGKrksGKDy~a~~l~~~l~~~---~~~iv~iS~   41 (103)
                      .-.++|+|.+|+||-.++..+...+...   .+.++.++.
T Consensus        45 ~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~   84 (386)
T 2qby_A           45 PNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINT   84 (386)
T ss_dssp             CCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEC
Confidence            3478899999999999999999887542   556666664

>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A

Probab=90.90  E-value=0.25  Score=36.45  Aligned_cols=39  Identities=23%  Similarity=0.322  Sum_probs=29.9

Q ss_pred             CCCCeEEEEEecCcCCchhHHHHHHHHHhcc--cceEEEec
Q psy4713           1 MTQPKLILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIRL   39 (103)
Q Consensus         1 ~~~pklIiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~i   39 (103)
                      |.++++|.+.|+|-|+||=.+|-.|+..|.+  .++.+|-.
T Consensus         1 M~M~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~   41 (286)
T 2xj4_A            1 MAETRVIVVGNEKGGAGKSTIAVHLVTALLYGGAKVAVIDL   41 (286)
T ss_dssp             ---CEEEEECCSSSCTTHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred             CCCCeEEEEEcCCCCCCHHHHHHHHHHHHHHCCCcEEEEEC
Confidence            6778899999999999999999999998865  35555543

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=90.51  E-value=0.47  Score=33.14  Aligned_cols=39  Identities=18%  Similarity=0.338  Sum_probs=31.2

Q ss_pred             CCeEEEEEecCcCCchhHHHHHHHHHhcc--cceEEEecch
Q psy4713           3 QPKLILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIRLSA   41 (103)
Q Consensus         3 ~pklIiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~iS~   41 (103)
                      ++..+|.|.|.+||||--++..|...+..  ..+.+|++.+
T Consensus        20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~   60 (208)
T 3c8u_A           20 PGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDG   60 (208)
T ss_dssp             CSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGG
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCC
Confidence            46679999999999999999999998863  2466666654

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=90.45  E-value=0.24  Score=34.09  Aligned_cols=24  Identities=25%  Similarity=0.488  Sum_probs=21.8

Q ss_pred             EEEEEecCcCCchhHHHHHHHHHhc
Q psy4713           6 LILLFSGKRKSGKDFLTDYLLERIG   30 (103)
Q Consensus         6 lIiL~sGKrksGKDy~a~~l~~~l~   30 (103)
                      .||.++|..||||--++..|.. +|
T Consensus         3 ~~i~l~G~~GsGKST~~~~La~-lg   26 (206)
T 1jjv_A            3 YIVGLTGGIGSGKTTIANLFTD-LG   26 (206)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT-TT
T ss_pred             cEEEEECCCCCCHHHHHHHHHH-CC
Confidence            6899999999999999999987 65

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=90.43  E-value=0.26  Score=33.21  Aligned_cols=27  Identities=37%  Similarity=0.438  Sum_probs=23.2

Q ss_pred             CeEEEEEecCcCCchhHHHHHHHHHhc
Q psy4713           4 PKLILLFSGKRKSGKDFLTDYLLERIG   30 (103)
Q Consensus         4 pklIiL~sGKrksGKDy~a~~l~~~l~   30 (103)
                      +.-+|+++|.+||||--++..|...++
T Consensus         8 ~g~~i~l~G~~GsGKSTl~~~La~~~~   34 (191)
T 1zp6_A            8 GGNILLLSGHPGSGKSTIAEALANLPG   34 (191)
T ss_dssp             TTEEEEEEECTTSCHHHHHHHHHTCSS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhccC
Confidence            446788999999999999999988754

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=90.43  E-value=0.31  Score=37.32  Aligned_cols=34  Identities=21%  Similarity=0.407  Sum_probs=26.7

Q ss_pred             CeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecc
Q psy4713           4 PKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLS   40 (103)
Q Consensus         4 pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS   40 (103)
                      +..-|||+|.+|+||-.++..++..++   +.++.++
T Consensus       116 ~~~~vLl~GppGtGKT~la~aia~~~~---~~~~~i~  149 (357)
T 3d8b_A          116 PPKGILLFGPPGTGKTLIGKCIASQSG---ATFFSIS  149 (357)
T ss_dssp             CCSEEEEESSTTSSHHHHHHHHHHHTT---CEEEEEE
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHcC---CeEEEEe
Confidence            345688999999999999999999875   3444444

>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A

Probab=90.42  E-value=0.22  Score=35.75  Aligned_cols=23  Identities=35%  Similarity=0.349  Sum_probs=21.3

Q ss_pred             EEEecCcCCchhHHHHHHHHHhc
Q psy4713           8 LLFSGKRKSGKDFLTDYLLERIG   30 (103)
Q Consensus         8 iL~sGKrksGKDy~a~~l~~~l~   30 (103)
                      +||+|.+|+||-.++..+.+.+.
T Consensus        41 ~ll~G~~G~GKt~la~~l~~~l~   63 (319)
T 2chq_A           41 LLFSGPPGTGKTATAIALARDLF   63 (319)
T ss_dssp             EEEESSSSSSHHHHHHHHHHHHH
T ss_pred             EEEECcCCcCHHHHHHHHHHHhc
Confidence            79999999999999999999873

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=90.38  E-value=0.12  Score=38.47  Aligned_cols=39  Identities=15%  Similarity=0.313  Sum_probs=26.5

Q ss_pred             CeEEEEEecCcCCchhHHHHHHHHHhccc----ceEEEecchh
Q psy4713           4 PKLILLFSGKRKSGKDFLTDYLLERIGSQ----HCAIIRLSAP   42 (103)
Q Consensus         4 pklIiL~sGKrksGKDy~a~~l~~~l~~~----~~~iv~iS~p   42 (103)
                      +..+|+|.|-.||||.=+++.|.+.|...    ...|+....|
T Consensus        24 ~g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~rep   66 (227)
T 3v9p_A           24 RGKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVTREP   66 (227)
T ss_dssp             CCCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEEESS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeeecCC
Confidence            45678899999999999999999999653    3334444444

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=90.33  E-value=0.27  Score=33.10  Aligned_cols=25  Identities=16%  Similarity=0.320  Sum_probs=23.2

Q ss_pred             EEEEecCcCCchhHHHHHHHHHhcc
Q psy4713           7 ILLFSGKRKSGKDFLTDYLLERIGS   31 (103)
Q Consensus         7 IiL~sGKrksGKDy~a~~l~~~l~~   31 (103)
                      +|+|.|-.||||--++..|++.++.
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~~l~~   26 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISKKLGY   26 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHCC
T ss_pred             EEEEECCCccCHHHHHHHHHHhcCC
Confidence            6899999999999999999999974

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=90.16  E-value=0.33  Score=34.61  Aligned_cols=24  Identities=21%  Similarity=0.299  Sum_probs=21.9

Q ss_pred             EEEEecCcCCchhHHHHHHHHHhc
Q psy4713           7 ILLFSGKRKSGKDFLTDYLLERIG   30 (103)
Q Consensus         7 IiL~sGKrksGKDy~a~~l~~~l~   30 (103)
                      -+||.|.+|+||-.++..+...++
T Consensus        47 ~vll~G~~GtGKT~la~~la~~~~   70 (257)
T 1lv7_A           47 GVLMVGPPGTGKTLLAKAIAGEAK   70 (257)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             eEEEECcCCCCHHHHHHHHHHHcC
Confidence            378999999999999999999875

>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}

Probab=90.09  E-value=0.4  Score=40.07  Aligned_cols=47  Identities=17%  Similarity=0.253  Sum_probs=42.7

Q ss_pred             CCeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHH
Q psy4713           3 QPKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAK   49 (103)
Q Consensus         3 ~pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~   49 (103)
                      ..+++|+|-|=-+||||=..+.|.+.|....+.|+.++.|+-++-+.
T Consensus        41 ~~~vlIvfEG~D~AGKg~~Ik~l~~~l~prg~~V~a~~~Pt~~E~~~   87 (500)
T 3czp_A           41 RFPVIILINGIEGAGKGETVKLLNEWMDPRLIEVQSFLRPSDEELER   87 (500)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHHSCGGGEEEEECSSCCHHHHTS
T ss_pred             CCCEEEEEeCcCCCCHHHHHHHHHHhcCccCCeEEEeCCCChhhccC
Confidence            45789999999999999999999999999899999999999887553

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=90.06  E-value=0.33  Score=34.88  Aligned_cols=28  Identities=21%  Similarity=0.350  Sum_probs=24.0

Q ss_pred             CeEEEEEecCcCCchhHHHHHHHHHhcc
Q psy4713           4 PKLILLFSGKRKSGKDFLTDYLLERIGS   31 (103)
Q Consensus         4 pklIiL~sGKrksGKDy~a~~l~~~l~~   31 (103)
                      +..-+||+|.+|+||-.++..+...++.
T Consensus        50 ~~~~~ll~G~~GtGKT~la~~la~~~~~   77 (285)
T 3h4m_A           50 PPKGILLYGPPGTGKTLLAKAVATETNA   77 (285)
T ss_dssp             CCSEEEEESSSSSSHHHHHHHHHHHTTC
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHhCC
Confidence            4445899999999999999999999863

>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}

Probab=90.04  E-value=0.65  Score=35.50  Aligned_cols=59  Identities=19%  Similarity=0.219  Sum_probs=43.1

Q ss_pred             CeEEEEEecCcCCchhHH-HHHHHHHhcc-cceEEEecchhhHHH--HHHHcCccHHHhcCCC
Q psy4713           4 PKLILLFSGKRKSGKDFL-TDYLLERIGS-QHCAIIRLSAPIKSH--WAKQNGLEMDKLLGAT   62 (103)
Q Consensus         4 pklIiL~sGKrksGKDy~-a~~l~~~l~~-~~~~iv~iS~piK~~--yA~~~glDl~~LL~d~   62 (103)
                      +--++||+|-.++||--+ ...+.+.+.. ..|.++.+++|..+-  -|+.+|+|+++++.++
T Consensus        20 ~gs~~li~g~p~~~~~~l~~qfl~~g~~~Ge~~~~~~~~e~~~~l~~~~~~~G~dl~~~~~~g   82 (260)
T 3bs4_A           20 HSLILIHEEDASSRGKDILFYILSRKLKSDNLVGMFSISYPLQLIIRILSRFGVDVIKYLENH   82 (260)
T ss_dssp             TCEEEEEECSGGGCHHHHHHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHTTCCHHHHHHTT
T ss_pred             CCcEEEEEeCCCccHHHHHHHHHHHHHHCCCcEEEEEEeCCHHHHHHHHHHcCCCHHHHhhCC
Confidence            456788897777777655 4444555544 789999999998874  4567999999986543

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*

Probab=89.97  E-value=0.55  Score=35.53  Aligned_cols=55  Identities=25%  Similarity=0.349  Sum_probs=39.9

Q ss_pred             eEEEEEecCcCCchhHHHHHHHHHhc--------ccceEEEecchhh--H--HHHHHHcCccHHHhc
Q psy4713           5 KLILLFSGKRKSGKDFLTDYLLERIG--------SQHCAIIRLSAPI--K--SHWAKQNGLEMDKLL   59 (103)
Q Consensus         5 klIiL~sGKrksGKDy~a~~l~~~l~--------~~~~~iv~iS~pi--K--~~yA~~~glDl~~LL   59 (103)
                      .-+++|.|.+||||--++..+.....        ...|..++..++.  .  .++++..|.|.++++
T Consensus       107 G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~~~~~~~  173 (324)
T 2z43_A          107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVM  173 (324)
T ss_dssp             TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHH
T ss_pred             CcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCCCHHHHh
Confidence            34889999999999998888876542        2456677776642  1  247888999997654

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=89.92  E-value=0.34  Score=37.25  Aligned_cols=36  Identities=19%  Similarity=0.374  Sum_probs=27.5

Q ss_pred             CeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchh
Q psy4713           4 PKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAP   42 (103)
Q Consensus         4 pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~p   42 (103)
                      |.--|||+|.+|+||-.+|..++..++   +.++.++.+
T Consensus        83 ~~~~iLL~GppGtGKT~la~ala~~~~---~~~~~v~~~  118 (355)
T 2qp9_X           83 PTSGILLYGPPGTGKSYLAKAVATEAN---STFFSVSSS  118 (355)
T ss_dssp             CCCCEEEECSTTSCHHHHHHHHHHHHT---CEEEEEEHH
T ss_pred             CCceEEEECCCCCcHHHHHHHHHHHhC---CCEEEeeHH
Confidence            334578899999999999999999985   445555443

>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*

Probab=89.81  E-value=0.26  Score=35.83  Aligned_cols=25  Identities=28%  Similarity=0.367  Sum_probs=22.9

Q ss_pred             EEEEEecCcCCchhHHHHHHHHHhc
Q psy4713           6 LILLFSGKRKSGKDFLTDYLLERIG   30 (103)
Q Consensus         6 lIiL~sGKrksGKDy~a~~l~~~l~   30 (103)
                      ..+||+|.+|+||-.++..++..++
T Consensus        39 ~~vll~G~~GtGKT~la~~i~~~~~   63 (324)
T 1hqc_A           39 EHLLLFGPPGLGKTTLAHVIAHELG   63 (324)
T ss_dssp             CCCEEECCTTCCCHHHHHHHHHHHT
T ss_pred             CcEEEECCCCCCHHHHHHHHHHHhC
Confidence            4688999999999999999999886

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=89.79  E-value=0.33  Score=33.41  Aligned_cols=34  Identities=24%  Similarity=0.420  Sum_probs=27.2

Q ss_pred             CeEEEEEecCcCCchhHHHHHHHHHhcccceEEEe
Q psy4713           4 PKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIR   38 (103)
Q Consensus         4 pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~   38 (103)
                      +..+|.++|.+||||--++..|...++. .+.++.
T Consensus         5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~~-~i~~v~   38 (211)
T 3asz_A            5 KPFVIGIAGGTASGKTTLAQALARTLGE-RVALLP   38 (211)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHHHHGG-GEEEEE
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHHhCC-CeEEEe
Confidence            4568999999999999999999998763 344443

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=89.73  E-value=0.35  Score=36.70  Aligned_cols=28  Identities=29%  Similarity=0.367  Sum_probs=24.5

Q ss_pred             CeEEEEEecCcCCchhHHHHHHHHHhcc
Q psy4713           4 PKLILLFSGKRKSGKDFLTDYLLERIGS   31 (103)
Q Consensus         4 pklIiL~sGKrksGKDy~a~~l~~~l~~   31 (103)
                      |..-|||.|.+|+||-++|..+++.++.
T Consensus        50 ~~~~vll~GppGtGKT~la~~ia~~~~~   77 (363)
T 3hws_A           50 GKSNILLIGPTGSGKTLLAETLARLLDV   77 (363)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHcCC
Confidence            4556899999999999999999999853

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=89.68  E-value=0.27  Score=40.41  Aligned_cols=27  Identities=22%  Similarity=0.396  Sum_probs=24.9

Q ss_pred             CeEEEEEecCcCCchhHHHHHHHHHhc
Q psy4713           4 PKLILLFSGKRKSGKDFLTDYLLERIG   30 (103)
Q Consensus         4 pklIiL~sGKrksGKDy~a~~l~~~l~   30 (103)
                      |+.+|+|+|.++|||--++..|++.++
T Consensus         1 ~~~~i~i~GptgsGKttla~~La~~~~   27 (409)
T 3eph_A            1 SKKVIVIAGTTGVGKSQLSIQLAQKFN   27 (409)
T ss_dssp             CCEEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred             CCcEEEEECcchhhHHHHHHHHHHHCC
Confidence            567889999999999999999999986

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=89.64  E-value=0.35  Score=33.81  Aligned_cols=27  Identities=26%  Similarity=0.283  Sum_probs=23.8

Q ss_pred             CeEEEEEecCcCCchhHHHHHHHHHhc
Q psy4713           4 PKLILLFSGKRKSGKDFLTDYLLERIG   30 (103)
Q Consensus         4 pklIiL~sGKrksGKDy~a~~l~~~l~   30 (103)
                      +..+|+|+|-.||||.-++..|...++
T Consensus        24 ~~~~i~~~G~~GsGKsT~~~~l~~~l~   50 (211)
T 1m7g_A           24 RGLTIWLTGLSASGKSTLAVELEHQLV   50 (211)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence            345778899999999999999999987

>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=89.59  E-value=0.28  Score=35.22  Aligned_cols=33  Identities=18%  Similarity=0.244  Sum_probs=25.3

Q ss_pred             EEEecCcCCchhHHHHHHHHHhcc--cceEEEecc
Q psy4713           8 LLFSGKRKSGKDFLTDYLLERIGS--QHCAIIRLS   40 (103)
Q Consensus         8 iL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~iS   40 (103)
                      +||+|.+|+||..++..+.+.+..  ....++.++
T Consensus        45 ~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~   79 (323)
T 1sxj_B           45 MIISGMPGIGKTTSVHCLAHELLGRSYADGVLELN   79 (323)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEEC
T ss_pred             EEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEec
Confidence            899999999999999999998743  223344444

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=89.53  E-value=0.16  Score=36.27  Aligned_cols=24  Identities=21%  Similarity=0.335  Sum_probs=22.0

Q ss_pred             EEEecCcCCchhHHHHHHHHHhcc
Q psy4713           8 LLFSGKRKSGKDFLTDYLLERIGS   31 (103)
Q Consensus         8 iL~sGKrksGKDy~a~~l~~~l~~   31 (103)
                      +||+|.+|+||-+++..+...++.
T Consensus        47 vll~G~~GtGKT~la~~la~~~~~   70 (268)
T 2r62_A           47 VLLVGPPGTGKTLLAKAVAGEAHV   70 (268)
T ss_dssp             CCCBCSSCSSHHHHHHHHHHHHTC
T ss_pred             EEEECCCCCcHHHHHHHHHHHhCC
Confidence            789999999999999999998864

>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*

Probab=89.50  E-value=0.31  Score=36.00  Aligned_cols=25  Identities=32%  Similarity=0.509  Sum_probs=22.7

Q ss_pred             EEEEecCcCCchhHHHHHHHHHhcc
Q psy4713           7 ILLFSGKRKSGKDFLTDYLLERIGS   31 (103)
Q Consensus         7 IiL~sGKrksGKDy~a~~l~~~l~~   31 (103)
                      .+||+|.+|+||-.++..+.+.+..
T Consensus        40 ~~ll~G~~G~GKT~la~~la~~l~~   64 (373)
T 1jr3_A           40 AYLFSGTRGVGKTSIARLLAKGLNC   64 (373)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCC
Confidence            6899999999999999999998853

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=89.48  E-value=0.69  Score=34.82  Aligned_cols=39  Identities=15%  Similarity=0.229  Sum_probs=31.5

Q ss_pred             CCeEEEEEecCcCCchhHHHHHHHHHhc--c--cceEEEecch
Q psy4713           3 QPKLILLFSGKRKSGKDFLTDYLLERIG--S--QHCAIIRLSA   41 (103)
Q Consensus         3 ~pklIiL~sGKrksGKDy~a~~l~~~l~--~--~~~~iv~iS~   41 (103)
                      .+..||.|+|.+||||--++..|...+.  .  ..+.+++..+
T Consensus        78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~  120 (308)
T 1sq5_A           78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDG  120 (308)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGG
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCC
Confidence            4557999999999999999999999876  2  4577766654

>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=89.38  E-value=0.39  Score=38.78  Aligned_cols=34  Identities=15%  Similarity=0.208  Sum_probs=27.2

Q ss_pred             CeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecc
Q psy4713           4 PKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLS   40 (103)
Q Consensus         4 pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS   40 (103)
                      +.-.+||+|.+|+||-.++..+++.++   +.++.++
T Consensus        76 ~~~~lLL~GppGtGKTtla~~la~~l~---~~~i~in  109 (516)
T 1sxj_A           76 VFRAAMLYGPPGIGKTTAAHLVAQELG---YDILEQN  109 (516)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHHHTT---CEEEEEC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHcC---CCEEEEe
Confidence            345789999999999999999999985   4444443

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=89.26  E-value=0.33  Score=35.64  Aligned_cols=30  Identities=23%  Similarity=0.346  Sum_probs=25.3

Q ss_pred             EEEEecCcCCchhHHHHHHHHHhcccceEEEec
Q psy4713           7 ILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRL   39 (103)
Q Consensus         7 IiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~i   39 (103)
                      +|+|+|.+||||--++..|++.++   +.+++.
T Consensus         3 li~I~G~~GSGKSTla~~La~~~~---~~~i~~   32 (253)
T 2ze6_A            3 LHLIYGPTCSGKTDMAIQIAQETG---WPVVAL   32 (253)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHC---CCEEEC
T ss_pred             EEEEECCCCcCHHHHHHHHHhcCC---CeEEec
Confidence            789999999999999999999986   344544

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=89.25  E-value=0.25  Score=39.07  Aligned_cols=69  Identities=16%  Similarity=0.163  Sum_probs=41.3

Q ss_pred             CeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhh------HHHHHH--HcCccHHHhcCCCCcHHHhHHHHHHH
Q psy4713           4 PKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPI------KSHWAK--QNGLEMDKLLGATKYKEKYRAEMITW   75 (103)
Q Consensus         4 pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~pi------K~~yA~--~~glDl~~LL~d~~YKE~~R~~mi~w   75 (103)
                      +..+|+++|-+||||--++..|.+.++   +.+|+. +.+      .+.-..  ..|.+  =+++.......+|..++..
T Consensus       257 ~~~lIil~G~pGSGKSTla~~L~~~~~---~~~i~~-D~~~~~~~~~~~~~~~l~~g~~--vIiD~~~~~~~~r~~~~~~  330 (416)
T 3zvl_A          257 NPEVVVAVGFPGAGKSTFIQEHLVSAG---YVHVNR-DTLGSWQRCVSSCQAALRQGKR--VVIDNTNPDVPSRARYIQC  330 (416)
T ss_dssp             SCCEEEEESCTTSSHHHHHHHHTGGGT---CEECCG-GGSCSHHHHHHHHHHHHHTTCC--EEEESCCCSHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHhcC---cEEEcc-chHHHHHHHHHHHHHHHhcCCc--EEEeCCCCCHHHHHHHHHH
Confidence            346778899999999999999998875   333432 222      111111  11221  2355566677777777665


Q ss_pred             HHH
Q psy4713          76 SEA   78 (103)
Q Consensus        76 ge~   78 (103)
                      ..+
T Consensus       331 ~~~  333 (416)
T 3zvl_A          331 AKD  333 (416)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            543

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=89.21  E-value=0.39  Score=32.73  Aligned_cols=26  Identities=15%  Similarity=0.212  Sum_probs=22.6

Q ss_pred             EEEEEecCcCCchhHHHHHHHHHhcc
Q psy4713           6 LILLFSGKRKSGKDFLTDYLLERIGS   31 (103)
Q Consensus         6 lIiL~sGKrksGKDy~a~~l~~~l~~   31 (103)
                      -+++|.|.+||||-.++..+...+..
T Consensus        37 ~~~~l~G~~G~GKTtL~~~i~~~~~~   62 (149)
T 2kjq_A           37 QFIYVWGEEGAGKSHLLQAWVAQALE   62 (149)
T ss_dssp             SEEEEESSSTTTTCHHHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            36788999999999999999998844

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=89.18  E-value=0.41  Score=34.40  Aligned_cols=28  Identities=25%  Similarity=0.450  Sum_probs=25.4

Q ss_pred             CeEEEEEecCcCCchhHHHHHHHHHhcc
Q psy4713           4 PKLILLFSGKRKSGKDFLTDYLLERIGS   31 (103)
Q Consensus         4 pklIiL~sGKrksGKDy~a~~l~~~l~~   31 (103)
                      +..||.|+|.+||||--++..|...+|.
T Consensus        24 ~g~iigI~G~~GsGKSTl~k~L~~~lG~   51 (245)
T 2jeo_A           24 RPFLIGVSGGTASGKSTVCEKIMELLGQ   51 (245)
T ss_dssp             CSEEEEEECSTTSSHHHHHHHHHHHHTG
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHhch
Confidence            5578999999999999999999998874

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=89.15  E-value=0.42  Score=35.52  Aligned_cols=26  Identities=19%  Similarity=0.372  Sum_probs=23.7

Q ss_pred             EEEEEecCcCCchhHHHHHHHHHhcc
Q psy4713           6 LILLFSGKRKSGKDFLTDYLLERIGS   31 (103)
Q Consensus         6 lIiL~sGKrksGKDy~a~~l~~~l~~   31 (103)
                      -.+||+|.+|+||-.++..+...++.
T Consensus        71 ~~vLl~GppGtGKT~la~~la~~l~~   96 (368)
T 3uk6_A           71 RAVLIAGQPGTGKTAIAMGMAQALGP   96 (368)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHHHCS
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            46899999999999999999999974

>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}

Probab=89.07  E-value=0.3  Score=39.10  Aligned_cols=35  Identities=17%  Similarity=0.255  Sum_probs=26.3

Q ss_pred             EEEecCcCCchhHHHHHHHHHhcc-------cceEEEecchh
Q psy4713           8 LLFSGKRKSGKDFLTDYLLERIGS-------QHCAIIRLSAP   42 (103)
Q Consensus         8 iL~sGKrksGKDy~a~~l~~~l~~-------~~~~iv~iS~p   42 (103)
                      +||.|.+|+||-.++..++..+..       ....++.++..
T Consensus       204 ~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~  245 (468)
T 3pxg_A          204 PVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG  245 (468)
T ss_dssp             EEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC---
T ss_pred             eEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC
Confidence            588999999999999999999843       24566666654

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=89.06  E-value=0.41  Score=38.30  Aligned_cols=66  Identities=9%  Similarity=0.106  Sum_probs=40.8

Q ss_pred             EEEEEecCcCCchhHHHHHHHHHhcccceEEEec-------------chhhHHHHHH--HcC---ccHHHhcCCCCcHHH
Q psy4713           6 LILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRL-------------SAPIKSHWAK--QNG---LEMDKLLGATKYKEK   67 (103)
Q Consensus         6 lIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~i-------------S~piK~~yA~--~~g---lDl~~LL~d~~YKE~   67 (103)
                      .+|+|+|.++|||--++..|++.++   +.||+.             ..|...|-+.  .|-   +|+++-.+.+.|.|.
T Consensus         4 ~~i~i~GptgsGKt~la~~La~~~~---~~iis~Ds~QvYr~~~igTakp~~~E~~gvphhlid~~~~~e~~s~~~F~~~   80 (322)
T 3exa_A            4 KLVAIVGPTAVGKTKTSVMLAKRLN---GEVISGDSMQVYRGMDIGTAKITAEEMDGVPHHLIDIKDPSESFSVADFQDL   80 (322)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHTTT---EEEEECCGGGGBTTCCTTTTCCCHHHHTTCCEESSSCBCTTSCCCHHHHHHH
T ss_pred             cEEEEECCCcCCHHHHHHHHHHhCc---cceeecCcccceeeeeecCCCCCHHHHcCCCEEEeccCChhhhccHHHHHHH
Confidence            3678999999999999999999985   333321             2355554432  122   244455555566666


Q ss_pred             hHHHHHH
Q psy4713          68 YRAEMIT   74 (103)
Q Consensus        68 ~R~~mi~   74 (103)
                      -+..+-.
T Consensus        81 a~~~i~~   87 (322)
T 3exa_A           81 ATPLITE   87 (322)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            5555544

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}

Probab=88.94  E-value=0.32  Score=47.12  Aligned_cols=67  Identities=24%  Similarity=0.331  Sum_probs=53.4

Q ss_pred             CeEEEEEecCcCCchhHHHHHHHHHhcc--cceEEEecchhhHHHHHHHcCccHHHhcC-CCCcHHHhHH
Q psy4713           4 PKLILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIRLSAPIKSHWAKQNGLEMDKLLG-ATKYKEKYRA   70 (103)
Q Consensus         4 pklIiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~iS~piK~~yA~~~glDl~~LL~-d~~YKE~~R~   70 (103)
                      +.-++||.|..||||..++-.+...-.+  ..|.-++++++.-+.||+.+|.|+++|.- +....|+.+.
T Consensus      1080 ~g~~vll~G~~GtGKT~la~~~~~ea~k~Ge~~~Fit~ee~~~~L~a~~~G~dl~~l~~~~pd~~e~~~~ 1149 (2050)
T 3cmu_A         1080 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALE 1149 (2050)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEccccHHHHHHHHcCCChhHheeecCcchHHHHH
Confidence            3457899999999999999887654433  78999999999999999999999998763 3345566654

>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G

Probab=88.80  E-value=0.23  Score=36.41  Aligned_cols=23  Identities=26%  Similarity=0.313  Sum_probs=21.8

Q ss_pred             EEEecCcCCchhHHHHHHHHHhc
Q psy4713           8 LLFSGKRKSGKDFLTDYLLERIG   30 (103)
Q Consensus         8 iL~sGKrksGKDy~a~~l~~~l~   30 (103)
                      |||+|..|+||-.++..+.+.++
T Consensus        48 vLl~G~~GtGKT~la~~la~~~~   70 (350)
T 1g8p_A           48 VLVFGDRGTGKSTAVRALAALLP   70 (350)
T ss_dssp             EEEECCGGGCTTHHHHHHHHHSC
T ss_pred             EEEECCCCccHHHHHHHHHHhCc
Confidence            89999999999999999999886

>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20

Probab=88.77  E-value=0.34  Score=34.89  Aligned_cols=24  Identities=29%  Similarity=0.300  Sum_probs=21.9

Q ss_pred             EEEecCcCCchhHHHHHHHHHhcc
Q psy4713           8 LLFSGKRKSGKDFLTDYLLERIGS   31 (103)
Q Consensus         8 iL~sGKrksGKDy~a~~l~~~l~~   31 (103)
                      +||+|.+|+||-.++..+.+.+..
T Consensus        49 ~ll~G~~G~GKT~la~~l~~~l~~   72 (327)
T 1iqp_A           49 LLFAGPPGVGKTTAALALARELFG   72 (327)
T ss_dssp             EEEESCTTSSHHHHHHHHHHHHHG
T ss_pred             EEEECcCCCCHHHHHHHHHHHhcC
Confidence            899999999999999999998743

>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}

Probab=88.72  E-value=0.62  Score=35.60  Aligned_cols=36  Identities=17%  Similarity=0.179  Sum_probs=29.5

Q ss_pred             CCeEEEEEecCcCCchhHHHHHHHHHhcc--cceEEEe
Q psy4713           3 QPKLILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIR   38 (103)
Q Consensus         3 ~pklIiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~   38 (103)
                      .++.|+++|||-|+||-.+|-.++..+.+  .++.+|.
T Consensus        17 ~~~~i~v~sgkGGvGKTTva~~LA~~lA~~G~rVllvD   54 (329)
T 2woo_A           17 TSLKWIFVGGKGGVGKTTTSCSLAIQMSKVRSSVLLIS   54 (329)
T ss_dssp             TTCCEEEEECSSSSSHHHHHHHHHHHHHTSSSCEEEEE
T ss_pred             CCCEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEE
Confidence            35788999999999999999999998876  4555554

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=88.71  E-value=0.48  Score=38.74  Aligned_cols=36  Identities=22%  Similarity=0.403  Sum_probs=28.6

Q ss_pred             CeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchh
Q psy4713           4 PKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAP   42 (103)
Q Consensus         4 pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~p   42 (103)
                      |+-=||+.|.+|+||=.+|..++..++   +.++++|.|
T Consensus       181 ~prGvLL~GPPGTGKTllAkAiA~e~~---~~f~~v~~s  216 (405)
T 4b4t_J          181 QPKGVILYGPPGTGKTLLARAVAHHTD---CKFIRVSGA  216 (405)
T ss_dssp             CCCCEEEESCSSSSHHHHHHHHHHHHT---CEEEEEEGG
T ss_pred             CCCceEEeCCCCCCHHHHHHHHHHhhC---CCceEEEhH
Confidence            344578999999999999999999975   556666654

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=88.61  E-value=0.53  Score=35.08  Aligned_cols=28  Identities=14%  Similarity=0.299  Sum_probs=24.6

Q ss_pred             eEEEEEecCcCCchhHHHHHHHHHhccc
Q psy4713           5 KLILLFSGKRKSGKDFLTDYLLERIGSQ   32 (103)
Q Consensus         5 klIiL~sGKrksGKDy~a~~l~~~l~~~   32 (103)
                      ..+|+|.|-.||||.-.+..|.+.+...
T Consensus        27 ~~~i~~eG~~GsGKsT~~~~l~~~l~~~   54 (236)
T 3lv8_A           27 AKFIVIEGLEGAGKSTAIQVVVETLQQN   54 (236)
T ss_dssp             CCEEEEEESTTSCHHHHHHHHHHHHHHT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence            3577899999999999999999999763

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=88.55  E-value=0.5  Score=39.73  Aligned_cols=28  Identities=32%  Similarity=0.312  Sum_probs=24.3

Q ss_pred             CeEEEEEecCcCCchhHHHHHHHHHhcc
Q psy4713           4 PKLILLFSGKRKSGKDFLTDYLLERIGS   31 (103)
Q Consensus         4 pklIiL~sGKrksGKDy~a~~l~~~l~~   31 (103)
                      |.-.+||.|.+|+||-.+|..++..+..
T Consensus       520 p~~~~Ll~Gp~GtGKT~lA~ala~~l~~  547 (758)
T 3pxi_A          520 PIGSFIFLGPTGVGKTELARALAESIFG  547 (758)
T ss_dssp             CSEEEEEESCTTSSHHHHHHHHHHHHHS
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence            4446999999999999999999999843

>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*

Probab=88.45  E-value=0.7  Score=34.49  Aligned_cols=56  Identities=18%  Similarity=0.279  Sum_probs=39.7

Q ss_pred             CeEEEEEecCcCCchhHHHHHHHHHh---------------c---ccceEEEecchhh--H--HHHHHHcCccHHHhc
Q psy4713           4 PKLILLFSGKRKSGKDFLTDYLLERI---------------G---SQHCAIIRLSAPI--K--SHWAKQNGLEMDKLL   59 (103)
Q Consensus         4 pklIiL~sGKrksGKDy~a~~l~~~l---------------~---~~~~~iv~iS~pi--K--~~yA~~~glDl~~LL   59 (103)
                      +.-|++|.|..||||--++..+....               |   ...|..++..++.  .  .++++..|+|.++++
T Consensus        97 ~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~~~g~~~~~~~  174 (322)
T 2i1q_A           97 SQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHAGIDGQTVL  174 (322)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHHHHTCCHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHHHcCCCHHHHh
Confidence            44689999999999999888877542               1   1456667776652  1  237888999987654

>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*

Probab=88.38  E-value=0.48  Score=37.57  Aligned_cols=35  Identities=20%  Similarity=0.333  Sum_probs=27.6

Q ss_pred             EEEEEecCcCCchhHHHHHHHHHhcccceEEEecch
Q psy4713           6 LILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSA   41 (103)
Q Consensus         6 lIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~   41 (103)
                      --+||+|.+|+||=.+|..++..++. .+..+.++.
T Consensus        64 ~~iLl~GppGtGKT~la~ala~~l~~-~~~~~~~~~   98 (456)
T 2c9o_A           64 RAVLLAGPPGTGKTALALAIAQELGS-KVPFCPMVG   98 (456)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHCT-TSCEEEEEG
T ss_pred             CeEEEECCCcCCHHHHHHHHHHHhCC-CceEEEEeH
Confidence            34788999999999999999999974 245555554

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=88.34  E-value=1.5  Score=34.86  Aligned_cols=29  Identities=14%  Similarity=0.300  Sum_probs=25.2

Q ss_pred             CCeEEEEEecCcCCchhHHHHHHHHHhcc
Q psy4713           3 QPKLILLFSGKRKSGKDFLTDYLLERIGS   31 (103)
Q Consensus         3 ~pklIiL~sGKrksGKDy~a~~l~~~l~~   31 (103)
                      +.+.+|++.|-.||||-.++..|+..++.
T Consensus        37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~   65 (469)
T 1bif_A           37 NCPTLIVMVGLPARGKTYISKKLTRYLNF   65 (469)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHHhc
Confidence            35678999999999999999999998864

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=88.30  E-value=0.44  Score=40.87  Aligned_cols=36  Identities=31%  Similarity=0.348  Sum_probs=27.5

Q ss_pred             CeEEEEEecCcCCchhHHHHHHHHHhcccceEEEec
Q psy4713           4 PKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRL   39 (103)
Q Consensus         4 pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~i   39 (103)
                      |.-.+||+|.+|+||-.+|..++..+......+++|
T Consensus       587 p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i  622 (854)
T 1qvr_A          587 PIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRI  622 (854)
T ss_dssp             CSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEE
Confidence            446899999999999999999999985433333333

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*

Probab=88.27  E-value=0.39  Score=45.73  Aligned_cols=62  Identities=26%  Similarity=0.407  Sum_probs=50.7

Q ss_pred             EEEEEecCcCCchhHHHHHHHHHhcc--cceEEEecchhhHHHHHHHcCccHHHhcCC-CCcHHH
Q psy4713           6 LILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIRLSAPIKSHWAKQNGLEMDKLLGA-TKYKEK   67 (103)
Q Consensus         6 lIiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~iS~piK~~yA~~~glDl~~LL~d-~~YKE~   67 (103)
                      -++|+.|..+|||=.+|-.+...-..  ..+.-|++.+++-..|++..|.|+++|+.. ++..|+
T Consensus      1083 ~~~l~~G~~g~GKT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~ 1147 (1706)
T 3cmw_A         1083 RIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQ 1147 (1706)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHH
T ss_pred             CEEEEEcCCCCChHHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHH
Confidence            37899999999999999887765433  578889999999999999999999999977 334443

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=88.20  E-value=0.59  Score=37.25  Aligned_cols=30  Identities=23%  Similarity=0.269  Sum_probs=25.1

Q ss_pred             EEEEEecCcCCchhHHHHHHHHHhcccceEEEe
Q psy4713           6 LILLFSGKRKSGKDFLTDYLLERIGSQHCAIIR   38 (103)
Q Consensus         6 lIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~   38 (103)
                      .+|+|+|.++|||--++..|++.++   +.||+
T Consensus        11 ~~i~i~GptgsGKt~la~~La~~~~---~~iis   40 (316)
T 3foz_A           11 KAIFLMGPTASGKTALAIELRKILP---VELIS   40 (316)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHSC---EEEEE
T ss_pred             cEEEEECCCccCHHHHHHHHHHhCC---CcEEe
Confidence            4678999999999999999999985   44444

>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20

Probab=88.14  E-value=0.48  Score=35.97  Aligned_cols=28  Identities=25%  Similarity=0.388  Sum_probs=24.4

Q ss_pred             CeEEEEEecCcCCchhHHHHHHHHHhcc
Q psy4713           4 PKLILLFSGKRKSGKDFLTDYLLERIGS   31 (103)
Q Consensus         4 pklIiL~sGKrksGKDy~a~~l~~~l~~   31 (103)
                      +..-|||+|.+|+||-.+|..+++.++.
T Consensus        71 ~~~~ill~Gp~GtGKT~la~~la~~l~~   98 (376)
T 1um8_A           71 SKSNILLIGPTGSGKTLMAQTLAKHLDI   98 (376)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred             CCCCEEEECCCCCCHHHHHHHHHHHhCC
Confidence            3456899999999999999999999863

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=88.07  E-value=0.42  Score=32.45  Aligned_cols=26  Identities=19%  Similarity=0.312  Sum_probs=22.2

Q ss_pred             CeEEEEEecCcCCchhHHHHHHHHHh
Q psy4713           4 PKLILLFSGKRKSGKDFLTDYLLERI   29 (103)
Q Consensus         4 pklIiL~sGKrksGKDy~a~~l~~~l   29 (103)
                      +--|+.|+|.+||||-=++..|...+
T Consensus         6 ~g~ii~l~Gp~GsGKSTl~~~L~~~~   31 (205)
T 3tr0_A            6 KANLFIISAPSGAGKTSLVRALVKAL   31 (205)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence            34477889999999999999998875

>3czq_A Putative polyphosphate kinase 2; structural genomics, APC6299, PSI-2, structure initiative; HET: MSE GOL; 2.23A {Sinorhizobium meliloti}

Probab=88.00  E-value=0.57  Score=37.09  Aligned_cols=44  Identities=14%  Similarity=0.353  Sum_probs=39.9

Q ss_pred             CeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHH
Q psy4713           4 PKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHW   47 (103)
Q Consensus         4 pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~y   47 (103)
                      .+++|+|-|=-+|||+=..+.|.+.|....+.|+.++.|+-++-
T Consensus        85 ~~vlIvfEG~DgAGKgt~Ik~L~e~Ldprg~~V~~~~~Pt~eE~  128 (304)
T 3czq_A           85 KRVMAVFEGRDAAGKGGAIHATTANMNPRSARVVALTKPTETER  128 (304)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHTTSCTTTEEEEECCSCCHHHH
T ss_pred             CCeEEEEeCCCCCCHHHHHHHHHHHhcccCCeEEEeCCcChHHH
Confidence            47899999999999999999999999988899999999995543

>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}

Probab=87.99  E-value=0.42  Score=34.65  Aligned_cols=23  Identities=26%  Similarity=0.339  Sum_probs=19.1

Q ss_pred             EEEEEecCcCCchhHHHHHHHHH
Q psy4713           6 LILLFSGKRKSGKDFLTDYLLER   28 (103)
Q Consensus         6 lIiL~sGKrksGKDy~a~~l~~~   28 (103)
                      .|.||||..||||-+.+-.+...
T Consensus         6 mi~l~tG~pGsGKT~~a~~~~~~   28 (199)
T 2r2a_A            6 EICLITGTPGSGKTLKMVSMMAN   28 (199)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHH
Confidence            38999999999999998776433

>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}

Probab=87.89  E-value=0.5  Score=39.49  Aligned_cols=47  Identities=21%  Similarity=0.399  Sum_probs=42.7

Q ss_pred             CCeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHH
Q psy4713           3 QPKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAK   49 (103)
Q Consensus         3 ~pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~   49 (103)
                      +.+++|+|-|=-+|||+=..+.|.+.|....+.|+.++.|+-++-+.
T Consensus       298 ~~~vlIvfEG~DaAGKg~~Ik~l~~~ldprg~~V~~~~~Pt~~E~~~  344 (500)
T 3czp_A          298 QHSLVAVFEGNDAAGKGGAIRRVTDALDPRQYHIVPIAAPTEEERAQ  344 (500)
T ss_dssp             GCEEEEEEEESTTSCHHHHHHHHHTTSCGGGCEEEECCSCCHHHHTS
T ss_pred             CCCEEEEEeccCCCCHHHHHHHHHHhcCccCCeEEEeCCCChhhhcc
Confidence            35789999999999999999999999999899999999999887643

>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A

Probab=87.52  E-value=0.58  Score=37.22  Aligned_cols=27  Identities=22%  Similarity=0.343  Sum_probs=23.4

Q ss_pred             CeEEEEEecCcCCchhHHHHHHHHHhc
Q psy4713           4 PKLILLFSGKRKSGKDFLTDYLLERIG   30 (103)
Q Consensus         4 pklIiL~sGKrksGKDy~a~~l~~~l~   30 (103)
                      |.--|||+|.+|+||-.++..++..+.
T Consensus       166 ~~~~vLL~GppGtGKT~lA~aia~~~~  192 (444)
T 2zan_A          166 PWRGILLFGPPGTGKSYLAKAVATEAN  192 (444)
T ss_dssp             CCSEEEEECSTTSSHHHHHHHHHHHCC
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHcC
Confidence            445688999999999999999999983

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}

Probab=87.51  E-value=0.45  Score=46.14  Aligned_cols=61  Identities=25%  Similarity=0.361  Sum_probs=50.1

Q ss_pred             CeEEEEEecCcCCchhHHHHHHHHHhcc--cceEEEecchhhHHHHHHHcCccHHHhcCCCCc
Q psy4713           4 PKLILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIRLSAPIKSHWAKQNGLEMDKLLGATKY   64 (103)
Q Consensus         4 pklIiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~iS~piK~~yA~~~glDl~~LL~d~~Y   64 (103)
                      +.-+++|+|..|+||=.+|-.+......  ..|..++..+++-..||+..|.|+++|+-..++
T Consensus      1426 ~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~ 1488 (2050)
T 3cmu_A         1426 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPD 1488 (2050)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCC
Confidence            4457899999999999999888665443  688999999988888899999999998754443

>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}

Probab=87.48  E-value=1.5  Score=30.12  Aligned_cols=59  Identities=12%  Similarity=0.187  Sum_probs=40.5

Q ss_pred             CeEEEEEecCcCCchhHHHHHHH-HHhc--ccceEEEecchhhHHH--HHHHcCccHHHhcCCC
Q psy4713           4 PKLILLFSGKRKSGKDFLTDYLL-ERIG--SQHCAIIRLSAPIKSH--WAKQNGLEMDKLLGAT   62 (103)
Q Consensus         4 pklIiL~sGKrksGKDy~a~~l~-~~l~--~~~~~iv~iS~piK~~--yA~~~glDl~~LL~d~   62 (103)
                      |--+++|.|..|+||--++-.+. +...  ...+..+++..+..+.  .+...|.|++.++.++
T Consensus        29 ~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E~~~~~~~~~~~~~~~~~~~~~~~~   92 (251)
T 2zts_A           29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERARDLRREMASFGWDFEKYEKEG   92 (251)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTT
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecccCCHHHHHHHHHHcCCChHHHHhcC
Confidence            34578999999999997765543 3222  2578888888776654  3556788887765543

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=87.42  E-value=0.55  Score=34.53  Aligned_cols=34  Identities=18%  Similarity=0.246  Sum_probs=27.0

Q ss_pred             CeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecc
Q psy4713           4 PKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLS   40 (103)
Q Consensus         4 pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS   40 (103)
                      +.-++|++|.+|+||-.++..+.+.++   ..++.++
T Consensus        47 ~~~~~L~~G~~G~GKT~la~~la~~l~---~~~~~i~   80 (324)
T 3u61_B           47 IPHIILHSPSPGTGKTTVAKALCHDVN---ADMMFVN   80 (324)
T ss_dssp             CCSEEEECSSTTSSHHHHHHHHHHHTT---EEEEEEE
T ss_pred             CCeEEEeeCcCCCCHHHHHHHHHHHhC---CCEEEEc
Confidence            345789999999999999999999885   4444444

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=87.30  E-value=0.48  Score=34.71  Aligned_cols=26  Identities=19%  Similarity=0.358  Sum_probs=21.9

Q ss_pred             eEEEEEecCcCCchhHHHHHHHHHhc
Q psy4713           5 KLILLFSGKRKSGKDFLTDYLLERIG   30 (103)
Q Consensus         5 klIiL~sGKrksGKDy~a~~l~~~l~   30 (103)
                      .-+|+|+|.+||||+=+.+.|...+.
T Consensus        19 g~~ivl~GPSGaGKsTL~~~L~~~~~   44 (197)
T 3ney_A           19 RKTLVLIGASGVGRSHIKNALLSQNP   44 (197)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             CCEEEEECcCCCCHHHHHHHHHhhCC
Confidence            34677899999999999999988753

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=87.19  E-value=1.2  Score=34.15  Aligned_cols=57  Identities=18%  Similarity=0.177  Sum_probs=40.8

Q ss_pred             CeEEEEEecCcCCchhHHHHHHHHHhc--------ccceEEEecchhhH----HHHHHHcCccHHHhcC
Q psy4713           4 PKLILLFSGKRKSGKDFLTDYLLERIG--------SQHCAIIRLSAPIK----SHWAKQNGLEMDKLLG   60 (103)
Q Consensus         4 pklIiL~sGKrksGKDy~a~~l~~~l~--------~~~~~iv~iS~piK----~~yA~~~glDl~~LL~   60 (103)
                      +.-|++|.|.+||||=-++..+.....        ...+..++..++..    .+++...|+|.++++.
T Consensus       121 ~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~g~~~~~~l~  189 (343)
T 1v5w_A          121 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLD  189 (343)
T ss_dssp             SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHcCCCHHHHHh
Confidence            456889999999999999988877521        24566677666422    3478889999875543

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=87.10  E-value=0.51  Score=34.34  Aligned_cols=32  Identities=22%  Similarity=0.124  Sum_probs=25.2

Q ss_pred             EEEEEecCcCCchhHHHHHHHHHhcccceEEEec
Q psy4713           6 LILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRL   39 (103)
Q Consensus         6 lIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~i   39 (103)
                      .+|+|+|-+||||--++..|.+.+.  .+.+++.
T Consensus         3 ~~I~l~G~~GsGKST~a~~L~~~~~--~~~~i~~   34 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWAREFIAKNP--GFYNINR   34 (301)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHST--TEEEECH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhCC--CcEEecc
Confidence            5788999999999999999998642  3445544

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=86.91  E-value=0.36  Score=35.86  Aligned_cols=29  Identities=24%  Similarity=0.369  Sum_probs=25.6

Q ss_pred             CCeEEEEEecCcCCchhHHHHHHHHHhcc
Q psy4713           3 QPKLILLFSGKRKSGKDFLTDYLLERIGS   31 (103)
Q Consensus         3 ~pklIiL~sGKrksGKDy~a~~l~~~l~~   31 (103)
                      .+..+|+|.|-.||||--+++.|.+.|..
T Consensus        19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~~   47 (223)
T 3ld9_A           19 PGSMFITFEGIDGSGKTTQSHLLAEYLSE   47 (223)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            34567889999999999999999999875

>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*

Probab=86.83  E-value=0.82  Score=35.59  Aligned_cols=28  Identities=14%  Similarity=0.170  Sum_probs=25.5

Q ss_pred             CCeEEEEEecCcCCchhHHHHHHHHHhc
Q psy4713           3 QPKLILLFSGKRKSGKDFLTDYLLERIG   30 (103)
Q Consensus         3 ~pklIiL~sGKrksGKDy~a~~l~~~l~   30 (103)
                      +++.|+++|||-|.||-.+|-.|+-.+.
T Consensus        16 ~~~~i~v~sgKGGvGKTTvaanLA~~lA   43 (354)
T 2woj_A           16 TTHKWIFVGGKGGVGKTTSSCSIAIQMA   43 (354)
T ss_dssp             SSCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHHH
Confidence            4578999999999999999999998887

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=86.82  E-value=0.69  Score=32.87  Aligned_cols=31  Identities=23%  Similarity=0.288  Sum_probs=24.7

Q ss_pred             EEEecCcCCchhHHHHHHHHHhcccceEEEecch
Q psy4713           8 LLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSA   41 (103)
Q Consensus         8 iL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~   41 (103)
                      ++|.|.+||||-.++..+...++   ...+.+++
T Consensus        52 ~ll~G~~G~GKTtl~~~i~~~~~---~~~i~~~~   82 (254)
T 1ixz_A           52 VLLVGPPGVGKTHLARAVAGEAR---VPFITASG   82 (254)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHTT---CCEEEEEH
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC---CCEEEeeH
Confidence            88999999999999999998875   33444443

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=86.73  E-value=0.54  Score=35.21  Aligned_cols=24  Identities=33%  Similarity=0.315  Sum_probs=21.8

Q ss_pred             EEEecCcCCchhHHHHHHHHHhcc
Q psy4713           8 LLFSGKRKSGKDFLTDYLLERIGS   31 (103)
Q Consensus         8 iL~sGKrksGKDy~a~~l~~~l~~   31 (103)
                      +||+|.+|+||-.++..+...+..
T Consensus        49 ~ll~Gp~G~GKTtla~~la~~l~~   72 (340)
T 1sxj_C           49 LLFYGPPGTGKTSTIVALAREIYG   72 (340)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHHcC
Confidence            789999999999999999998743

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*

Probab=86.67  E-value=0.55  Score=44.74  Aligned_cols=67  Identities=24%  Similarity=0.337  Sum_probs=53.6

Q ss_pred             EEEEEecCcCCchhHHHHHHHHHhcc--cceEEEecchhhHHHHHHHcCccHHHhcCC-CCcHHHhHHHH
Q psy4713           6 LILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIRLSAPIKSHWAKQNGLEMDKLLGA-TKYKEKYRAEM   72 (103)
Q Consensus         6 lIiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~iS~piK~~yA~~~glDl~~LL~d-~~YKE~~R~~m   72 (103)
                      -||+++|..+|||=.+|-.......+  ..|..+..-+++=..||+..|.|+++|+-. +..-|++=..+
T Consensus      1432 ~~iei~g~~~sGkttl~~~~~a~~~~~g~~~~~i~~e~~~~~~~~~~~Gv~~~~l~~~~p~~~e~~l~~~ 1501 (1706)
T 3cmw_A         1432 RIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEIC 1501 (1706)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEecCCCCCHHHHHHcCCCHHHeEEeCCCcHHHHHHHH
Confidence            58999999999999999877754332  788889988888889999999999999865 44557664433

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=86.66  E-value=0.81  Score=37.33  Aligned_cols=36  Identities=25%  Similarity=0.383  Sum_probs=28.5

Q ss_pred             CeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchh
Q psy4713           4 PKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAP   42 (103)
Q Consensus         4 pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~p   42 (103)
                      |+-=||+.|..|+||=.+|..++..++   +.+++++.+
T Consensus       205 ~prGiLL~GPPGtGKT~lakAiA~~~~---~~~~~v~~~  240 (428)
T 4b4t_K          205 PPRGVLLYGPPGTGKTMLVKAVANSTK---AAFIRVNGS  240 (428)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHHHT---CEEEEEEGG
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHhC---CCeEEEecc
Confidence            344588999999999999999999985   555555544

>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*

Probab=86.50  E-value=1  Score=34.76  Aligned_cols=37  Identities=16%  Similarity=0.223  Sum_probs=30.1

Q ss_pred             CCeEEEEEecCcCCchhHHHHHHHHHhcc--cceEEEec
Q psy4713           3 QPKLILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIRL   39 (103)
Q Consensus         3 ~pklIiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~i   39 (103)
                      .++.|+++|||-|+||=-+|-.++..+.+  .++.+|..
T Consensus        24 ~~~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~   62 (349)
T 3ug7_A           24 DGTKYIMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVST   62 (349)
T ss_dssp             CSCEEEEEECSSSTTHHHHHHHHHHHHHHSSCCEEEEEC
T ss_pred             CCCEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEeC
Confidence            46889999999999999999999988865  45555553

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=86.45  E-value=1.1  Score=37.38  Aligned_cols=27  Identities=33%  Similarity=0.433  Sum_probs=24.5

Q ss_pred             CeEEEEEecCcCCchhHHHHHHHHHhc
Q psy4713           4 PKLILLFSGKRKSGKDFLTDYLLERIG   30 (103)
Q Consensus         4 pklIiL~sGKrksGKDy~a~~l~~~l~   30 (103)
                      |.--+||+|.+|+||-.+|..+++.++
T Consensus       487 p~~~~ll~G~~GtGKT~la~~la~~l~  513 (758)
T 1r6b_X          487 PVGSFLFAGPTGVGKTEVTVQLSKALG  513 (758)
T ss_dssp             CSEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             CceEEEEECCCCCcHHHHHHHHHHHhc
Confidence            556799999999999999999999985

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=86.45  E-value=0.51  Score=34.50  Aligned_cols=23  Identities=26%  Similarity=0.283  Sum_probs=21.5

Q ss_pred             EEEecCcCCchhHHHHHHHHHhc
Q psy4713           8 LLFSGKRKSGKDFLTDYLLERIG   30 (103)
Q Consensus         8 iL~sGKrksGKDy~a~~l~~~l~   30 (103)
                      +||+|.+|+||-.++..+...+.
T Consensus        61 ~ll~G~~G~GKT~la~~la~~l~   83 (353)
T 1sxj_D           61 MLFYGPPGTGKTSTILALTKELY   83 (353)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC
Confidence            79999999999999999999875

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=86.18  E-value=0.53  Score=34.26  Aligned_cols=27  Identities=22%  Similarity=0.250  Sum_probs=23.1

Q ss_pred             CeEEEEEecCcCCchhHHHHHHHHHhc
Q psy4713           4 PKLILLFSGKRKSGKDFLTDYLLERIG   30 (103)
Q Consensus         4 pklIiL~sGKrksGKDy~a~~l~~~l~   30 (103)
                      +--++.|+|.+||||+=+.+.|...+.
T Consensus        15 ~G~ii~l~GpsGsGKSTLlk~L~g~~~   41 (219)
T 1s96_A           15 QGTLYIVSAPSGAGKSSLIQALLKTQP   41 (219)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhccCC
Confidence            445788999999999999999988764

>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*

Probab=86.08  E-value=0.53  Score=34.34  Aligned_cols=37  Identities=14%  Similarity=0.258  Sum_probs=28.1

Q ss_pred             EEEEEecCcCCchhHHHHHHHHHhcccce-EEEecchh
Q psy4713           6 LILLFSGKRKSGKDFLTDYLLERIGSQHC-AIIRLSAP   42 (103)
Q Consensus         6 lIiL~sGKrksGKDy~a~~l~~~l~~~~~-~iv~iS~p   42 (103)
                      .+|+|.|-.||||.-.++.|.+.|..... .++-..+|
T Consensus         4 ~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v~~~rep   41 (213)
T 4tmk_A            4 KYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFTREP   41 (213)
T ss_dssp             CEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESS
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHcCCCcceeeeCC
Confidence            57789999999999999999999976332 33434444

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=85.93  E-value=1.9  Score=29.73  Aligned_cols=55  Identities=18%  Similarity=0.147  Sum_probs=36.3

Q ss_pred             eEEEEEecCcCCchhHHHHHHHHH--hc------ccceEEEecchh--h--HHHHHHHcCccHHHhc
Q psy4713           5 KLILLFSGKRKSGKDFLTDYLLER--IG------SQHCAIIRLSAP--I--KSHWAKQNGLEMDKLL   59 (103)
Q Consensus         5 klIiL~sGKrksGKDy~a~~l~~~--l~------~~~~~iv~iS~p--i--K~~yA~~~glDl~~LL   59 (103)
                      --+++|.|.+||||=-++..+...  +.      ...+..+...++  .  -.++++..|.+.++++
T Consensus        24 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~   90 (243)
T 1n0w_A           24 GSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVL   90 (243)
T ss_dssp             TSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHH
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHHHh
Confidence            347899999999999999988874  31      123333444331  1  2356778899986543

>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20

Probab=85.87  E-value=1.3  Score=31.90  Aligned_cols=34  Identities=21%  Similarity=0.307  Sum_probs=27.4

Q ss_pred             EEEEecCcCCchhHHHHHHHHHhcccceEEEecch
Q psy4713           7 ILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSA   41 (103)
Q Consensus         7 IiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~   41 (103)
                      +++|+|.+|+||=-++..+.+.+.. .+..++.+.
T Consensus        32 ~v~i~G~~G~GKT~L~~~~~~~~~~-~~~~~~~~~   65 (357)
T 2fna_A           32 ITLVLGLRRTGKSSIIKIGINELNL-PYIYLDLRK   65 (357)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHTC-CEEEEEGGG
T ss_pred             cEEEECCCCCCHHHHHHHHHHhcCC-CEEEEEchh
Confidence            7899999999999999999988764 355566553

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}

Probab=85.85  E-value=0.77  Score=35.26  Aligned_cols=28  Identities=25%  Similarity=0.330  Sum_probs=24.2

Q ss_pred             CeEEEEEecCcCCchhHHHHHHHHHhcc
Q psy4713           4 PKLILLFSGKRKSGKDFLTDYLLERIGS   31 (103)
Q Consensus         4 pklIiL~sGKrksGKDy~a~~l~~~l~~   31 (103)
                      |..-|||+|.+|+||-.++..+...++.
T Consensus       147 ~~~~vLL~GppGtGKT~la~aia~~~~~  174 (389)
T 3vfd_A          147 PARGLLLFGPPGNGKTMLAKAVAAESNA  174 (389)
T ss_dssp             CCSEEEEESSTTSCHHHHHHHHHHHTTC
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHhhcC
Confidence            3456899999999999999999998763

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=85.82  E-value=0.58  Score=39.34  Aligned_cols=34  Identities=18%  Similarity=0.278  Sum_probs=27.1

Q ss_pred             EEEecCcCCchhHHHHHHHHHhcc-------cceEEEecch
Q psy4713           8 LLFSGKRKSGKDFLTDYLLERIGS-------QHCAIIRLSA   41 (103)
Q Consensus         8 iL~sGKrksGKDy~a~~l~~~l~~-------~~~~iv~iS~   41 (103)
                      +||.|.+|+||-.++..++..+..       ..+.+++++.
T Consensus       204 vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~  244 (758)
T 3pxi_A          204 PVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM  244 (758)
T ss_dssp             EEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC--
T ss_pred             eEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc
Confidence            689999999999999999999843       2567777765

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=85.79  E-value=0.97  Score=37.02  Aligned_cols=36  Identities=28%  Similarity=0.377  Sum_probs=27.9

Q ss_pred             CeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchh
Q psy4713           4 PKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAP   42 (103)
Q Consensus         4 pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~p   42 (103)
                      |+-=||+.|.+|+||=.+|..++..++   +.+++++.+
T Consensus       214 ~prGvLL~GPPGtGKTllAkAiA~e~~---~~~~~v~~s  249 (437)
T 4b4t_L          214 PPKGVLLYGPPGTGKTLLAKAVAATIG---ANFIFSPAS  249 (437)
T ss_dssp             CCCEEEEESCTTSSHHHHHHHHHHHHT---CEEEEEEGG
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHhC---CCEEEEehh
Confidence            444578889999999999999999986   445555543

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=85.68  E-value=0.77  Score=38.34  Aligned_cols=66  Identities=26%  Similarity=0.386  Sum_probs=40.2

Q ss_pred             eEEEEEecCcCCchhHHHHHHHHHhcc-------cceEEEecchhhHHHHHHHcCccHHHhcCCCCcHHHhHHHHHHHHH
Q psy4713           5 KLILLFSGKRKSGKDFLTDYLLERIGS-------QHCAIIRLSAPIKSHWAKQNGLEMDKLLGATKYKEKYRAEMITWSE   77 (103)
Q Consensus         5 klIiL~sGKrksGKDy~a~~l~~~l~~-------~~~~iv~iS~piK~~yA~~~glDl~~LL~d~~YKE~~R~~mi~wge   77 (103)
                      +.-+||+|.+|+||-.++..+...+..       ..+.++.+              |+..++....|.......+-.+++
T Consensus       207 ~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~--------------~~~~l~~~~~~~g~~e~~l~~~~~  272 (758)
T 1r6b_X          207 KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL--------------DIGSLLAGTKYRGDFEKRFKALLK  272 (758)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEEC--------------CCC---CCCCCSSCHHHHHHHHHH
T ss_pred             CCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEE--------------cHHHHhccccccchHHHHHHHHHH
Confidence            344689999999999999999998853       13444443              334444434455555555555555


Q ss_pred             HHhccCh
Q psy4713          78 AERRKDN   84 (103)
Q Consensus        78 ~~R~~D~   84 (103)
                      +-++..+
T Consensus       273 ~~~~~~~  279 (758)
T 1r6b_X          273 QLEQDTN  279 (758)
T ss_dssp             HHSSSSC
T ss_pred             HHHhcCC
Confidence            5555433

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=85.44  E-value=1  Score=36.82  Aligned_cols=36  Identities=22%  Similarity=0.337  Sum_probs=27.8

Q ss_pred             CeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchh
Q psy4713           4 PKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAP   42 (103)
Q Consensus         4 pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~p   42 (103)
                      |+-=||+.|.+|+||=.+|..++..++   +.++++|.+
T Consensus       214 ~prGvLLyGPPGTGKTllAkAiA~e~~---~~f~~v~~s  249 (434)
T 4b4t_M          214 APKGALMYGPPGTGKTLLARACAAQTN---ATFLKLAAP  249 (434)
T ss_dssp             CCCEEEEESCTTSSHHHHHHHHHHHHT---CEEEEEEGG
T ss_pred             CCCeeEEECcCCCCHHHHHHHHHHHhC---CCEEEEehh
Confidence            344578899999999999999999986   455555543

>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*

Probab=85.37  E-value=0.63  Score=38.86  Aligned_cols=27  Identities=11%  Similarity=0.138  Sum_probs=25.0

Q ss_pred             eEEEEEecCcCCchhHHHHHHHHHhcc
Q psy4713           5 KLILLFSGKRKSGKDFLTDYLLERIGS   31 (103)
Q Consensus         5 klIiL~sGKrksGKDy~a~~l~~~l~~   31 (103)
                      -.+|+|+|-+||||--++..|+++|+.
T Consensus       395 ~~~I~l~GlsGsGKSTIa~~La~~L~~  421 (511)
T 1g8f_A          395 GFSIVLGNSLTVSREQLSIALLSTFLQ  421 (511)
T ss_dssp             CEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred             ceEEEecccCCCCHHHHHHHHHHHHHH
Confidence            378999999999999999999999984

>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}

Probab=85.18  E-value=0.81  Score=38.00  Aligned_cols=27  Identities=15%  Similarity=0.294  Sum_probs=24.5

Q ss_pred             eEEEEEecCcCCchhHHHHHHHHHhcc
Q psy4713           5 KLILLFSGKRKSGKDFLTDYLLERIGS   31 (103)
Q Consensus         5 klIiL~sGKrksGKDy~a~~l~~~l~~   31 (103)
                      ..+|+|+|-.||||.-++..|.+.++.
T Consensus       372 ~~~I~l~G~~GsGKSTia~~La~~L~~  398 (546)
T 2gks_A          372 GFCVWLTGLPCAGKSTIAEILATMLQA  398 (546)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             ceEEEccCCCCCCHHHHHHHHHHHhhh
Confidence            467899999999999999999999875

>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*

Probab=85.18  E-value=0.74  Score=34.80  Aligned_cols=26  Identities=23%  Similarity=0.110  Sum_probs=23.3

Q ss_pred             EEEEEecCcCCchhHHHHHHHHHhcc
Q psy4713           6 LILLFSGKRKSGKDFLTDYLLERIGS   31 (103)
Q Consensus         6 lIiL~sGKrksGKDy~a~~l~~~l~~   31 (103)
                      -.+||+|..|+||.-++..+++.+..
T Consensus        25 ~a~L~~G~~G~GKt~~a~~la~~l~~   50 (334)
T 1a5t_A           25 HALLIQALPGMGDDALIYALSRYLLC   50 (334)
T ss_dssp             SEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred             eeEEEECCCCchHHHHHHHHHHHHhC
Confidence            36899999999999999999998863

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=85.16  E-value=0.61  Score=32.68  Aligned_cols=26  Identities=23%  Similarity=0.280  Sum_probs=21.3

Q ss_pred             CeEEEEEecCcCCchhHHHHHHHHHh
Q psy4713           4 PKLILLFSGKRKSGKDFLTDYLLERI   29 (103)
Q Consensus         4 pklIiL~sGKrksGKDy~a~~l~~~l   29 (103)
                      |.-++.|.|.+||||.=+.+.|...+
T Consensus         3 ~g~~i~lvGpsGaGKSTLl~~L~~~~   28 (198)
T 1lvg_A            3 GPRPVVLSGPSGAGKSTLLKKLFQEH   28 (198)
T ss_dssp             --CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            44577899999999999999998765

>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*

Probab=84.97  E-value=0.88  Score=37.07  Aligned_cols=38  Identities=18%  Similarity=0.268  Sum_probs=30.5

Q ss_pred             CCeEEEEEecCcCCchhHHHHHHHHHhcc--cceEEEecc
Q psy4713           3 QPKLILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIRLS   40 (103)
Q Consensus         3 ~pklIiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~iS   40 (103)
                      +++.|+++|||-|+||=.+|-.++..+.+  .++-+|+..
T Consensus         6 ~~~~i~~~sgkGGvGKTT~a~~lA~~lA~~G~rVLlvd~D   45 (589)
T 1ihu_A            6 NIPPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTD   45 (589)
T ss_dssp             SCCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             CCCEEEEEeCCCcCHHHHHHHHHHHHHHHCCCcEEEEECC
Confidence            45678899999999999999999988865  456666554

>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*

Probab=84.91  E-value=0.94  Score=37.03  Aligned_cols=34  Identities=18%  Similarity=0.344  Sum_probs=26.5

Q ss_pred             CeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecc
Q psy4713           4 PKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLS   40 (103)
Q Consensus         4 pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS   40 (103)
                      +..-|||+|.+|+||-.++..+...++   +.++.++
T Consensus       237 ~~~~vLL~GppGtGKT~lAraia~~~~---~~fv~vn  270 (489)
T 3hu3_A          237 PPRGILLYGPPGTGKTLIARAVANETG---AFFFLIN  270 (489)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHHCS---SEEEEEE
T ss_pred             CCCcEEEECcCCCCHHHHHHHHHHHhC---CCEEEEE
Confidence            334588999999999999999998874   4445554

>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*

Probab=84.78  E-value=1.4  Score=34.24  Aligned_cols=37  Identities=14%  Similarity=0.170  Sum_probs=30.1

Q ss_pred             CeEEEEEecCcCCchhHHHHHHHHHhcc--cceEEEecc
Q psy4713           4 PKLILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIRLS   40 (103)
Q Consensus         4 pklIiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~iS   40 (103)
                      .+.|+++|||-|+||=.+|-.++..+.+  .++.+|..-
T Consensus        15 ~~~i~~~sgkGGvGKTt~a~~lA~~la~~g~~vllid~D   53 (334)
T 3iqw_A           15 SLRWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLLSTD   53 (334)
T ss_dssp             TCCEEEEECSTTSSHHHHHHHHHHHHTTSSSCEEEEECC
T ss_pred             CeEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEECC
Confidence            3678899999999999999999998876  456666653

>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=84.72  E-value=0.96  Score=37.83  Aligned_cols=36  Identities=22%  Similarity=0.359  Sum_probs=28.2

Q ss_pred             CeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchh
Q psy4713           4 PKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAP   42 (103)
Q Consensus         4 pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~p   42 (103)
                      |+-=||+.|..|+||=.+|..+++.++   +.++++|.+
T Consensus       242 pprGILLyGPPGTGKTlLAkAiA~e~~---~~fi~vs~s  277 (467)
T 4b4t_H          242 PPKGILLYGPPGTGKTLCARAVANRTD---ATFIRVIGS  277 (467)
T ss_dssp             CCSEEEECSCTTSSHHHHHHHHHHHHT---CEEEEEEGG
T ss_pred             CCCceEeeCCCCCcHHHHHHHHHhccC---CCeEEEEhH
Confidence            444578899999999999999999986   455555543

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}

Probab=84.67  E-value=1.2  Score=32.13  Aligned_cols=32  Identities=25%  Similarity=0.307  Sum_probs=25.5

Q ss_pred             EEEEecCcCCchhHHHHHHHHHhcccceEEEecch
Q psy4713           7 ILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSA   41 (103)
Q Consensus         7 IiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~   41 (103)
                      +++|+|.+|+||=-++..+.+.++   +..++.++
T Consensus        33 ~v~i~G~~G~GKT~Ll~~~~~~~~---~~~~~~~~   64 (350)
T 2qen_A           33 LTLLLGIRRVGKSSLLRAFLNERP---GILIDCRE   64 (350)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHSS---EEEEEHHH
T ss_pred             eEEEECCCcCCHHHHHHHHHHHcC---cEEEEeec
Confidence            688999999999999999988863   44555543

>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}

Probab=84.60  E-value=1.6  Score=30.34  Aligned_cols=38  Identities=11%  Similarity=0.222  Sum_probs=31.0

Q ss_pred             CCCeEEEEEecCcCCchhHHHHHHHHHhccc---ceEEEec
Q psy4713           2 TQPKLILLFSGKRKSGKDFLTDYLLERIGSQ---HCAIIRL   39 (103)
Q Consensus         2 ~~pklIiL~sGKrksGKDy~a~~l~~~l~~~---~~~iv~i   39 (103)
                      .++++|.+.|+|-|+||=.+|-.|+..|.+.   ++.+|-.
T Consensus         2 ~~~~vI~v~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~   42 (245)
T 3ea0_A            2 NAKRVFGFVSAKGGDGGSCIAANFAFALSQEPDIHVLAVDI   42 (245)
T ss_dssp             -CCEEEEEEESSTTSSHHHHHHHHHHHHTTSTTCCEEEEEC
T ss_pred             CCCeEEEEECCCCCcchHHHHHHHHHHHHhCcCCCEEEEEC
Confidence            4678999999999999999999999998753   4555554

>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}

Probab=84.56  E-value=0.9  Score=34.53  Aligned_cols=37  Identities=8%  Similarity=-0.006  Sum_probs=28.3

Q ss_pred             CCeEEEEEecCcCCchhHHHHHHHHHhcc--cceEEEec
Q psy4713           3 QPKLILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIRL   39 (103)
Q Consensus         3 ~pklIiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~i   39 (103)
                      .-++.|+++||.|+||=+++-.+...+.+  ..+.++-+
T Consensus         4 ~g~l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~   42 (228)
T 2r8r_A            4 RGRLKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVV   42 (228)
T ss_dssp             CCCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred             CceEEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEe
Confidence            34789999999999999998888887765  24444443

>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*

Probab=84.25  E-value=1.5  Score=30.33  Aligned_cols=36  Identities=25%  Similarity=0.354  Sum_probs=30.1

Q ss_pred             CeEEEEEecCcCCchhHHHHHHHHHhcc--cceEEEec
Q psy4713           4 PKLILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIRL   39 (103)
Q Consensus         4 pklIiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~i   39 (103)
                      ++.|.++|+|-|+||=.+|-.|+..|.+  .++.+|-.
T Consensus         2 ~~~i~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~   39 (237)
T 1g3q_A            2 GRIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDG   39 (237)
T ss_dssp             CEEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred             ceEEEEecCCCCCCHHHHHHHHHHHHHhcCCeEEEEeC
Confidence            5789999999999999999999998865  45666655

>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}

Probab=84.19  E-value=0.75  Score=33.99  Aligned_cols=24  Identities=17%  Similarity=0.252  Sum_probs=22.0

Q ss_pred             EEEecCcCCchhHHHHHHHHHhcc
Q psy4713           8 LLFSGKRKSGKDFLTDYLLERIGS   31 (103)
Q Consensus         8 iL~sGKrksGKDy~a~~l~~~l~~   31 (103)
                      +||.|..|+||-.++..+...++.
T Consensus        49 vll~G~pGtGKT~la~~la~~~~~   72 (331)
T 2r44_A           49 ILLEGVPGLAKTLSVNTLAKTMDL   72 (331)
T ss_dssp             EEEESCCCHHHHHHHHHHHHHTTC
T ss_pred             EEEECCCCCcHHHHHHHHHHHhCC
Confidence            789999999999999999998864

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=84.18  E-value=0.67  Score=34.18  Aligned_cols=22  Identities=41%  Similarity=0.461  Sum_probs=20.4

Q ss_pred             EEEecCcCCchhHHHHHHHHHh
Q psy4713           8 LLFSGKRKSGKDFLTDYLLERI   29 (103)
Q Consensus         8 iL~sGKrksGKDy~a~~l~~~l   29 (103)
                      ++|+|.+|+||--++..+...+
T Consensus        39 ~ll~Gp~G~GKTtl~~~la~~l   60 (354)
T 1sxj_E           39 LLLYGPNGTGKKTRCMALLESI   60 (354)
T ss_dssp             EEEECSTTSSHHHHHHTHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            8999999999999999999965

>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*

Probab=84.03  E-value=1.1  Score=38.48  Aligned_cols=36  Identities=17%  Similarity=0.133  Sum_probs=27.5

Q ss_pred             CeEEEEEecCcCCchhHHHHHHHHHhcccceEEEec
Q psy4713           4 PKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRL   39 (103)
Q Consensus         4 pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~i   39 (103)
                      +..+|+|+|-+||||--++..|.++|.+....++.+
T Consensus        51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~l   86 (630)
T 1x6v_B           51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTL   86 (630)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEe
Confidence            456889999999999999999999984322333334

>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*

Probab=83.82  E-value=1.4  Score=36.91  Aligned_cols=27  Identities=22%  Similarity=0.386  Sum_probs=24.8

Q ss_pred             eEEEEEecCcCCchhHHHHHHHHHhcc
Q psy4713           5 KLILLFSGKRKSGKDFLTDYLLERIGS   31 (103)
Q Consensus         5 klIiL~sGKrksGKDy~a~~l~~~l~~   31 (103)
                      ..+|+|+|-+||||--++..|.++|+.
T Consensus       396 ~~~I~l~GlsGSGKSTiA~~La~~L~~  422 (573)
T 1m8p_A          396 GFTIFLTGYMNSGKDAIARALQVTLNQ  422 (573)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             ceEEEeecCCCCCHHHHHHHHHHHhcc
Confidence            478999999999999999999999974

>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*

Probab=83.80  E-value=1.5  Score=31.61  Aligned_cols=36  Identities=25%  Similarity=0.305  Sum_probs=29.2

Q ss_pred             CCeEEEEEecCcCCchhHHHHHHHHHhcc--cceEEEe
Q psy4713           3 QPKLILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIR   38 (103)
Q Consensus         3 ~pklIiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~   38 (103)
                      .++.|.++|||-|+||=.+|-.|+..|..  .++.+|-
T Consensus        17 ~~~vI~v~s~kGGvGKTT~a~nLA~~la~~G~~VlliD   54 (262)
T 2ph1_A           17 IKSRIAVMSGKGGVGKSTVTALLAVHYARQGKKVGILD   54 (262)
T ss_dssp             CSCEEEEECSSSCTTHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCeEEEEEcCCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence            46789999999999999999999988865  3455544

>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10

Probab=83.54  E-value=1.7  Score=30.79  Aligned_cols=36  Identities=25%  Similarity=0.305  Sum_probs=29.8

Q ss_pred             CeEEEEEecCcCCchhHHHHHHHHHhcc--cceEEEec
Q psy4713           4 PKLILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIRL   39 (103)
Q Consensus         4 pklIiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~i   39 (103)
                      ++.|.++|+|-|+||=.+|-.|+..|..  .++.+|-.
T Consensus         2 ~~~I~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~   39 (263)
T 1hyq_A            2 VRTITVASGKGGTGKTTITANLGVALAQLGHDVTIVDA   39 (263)
T ss_dssp             CEEEEEEESSSCSCHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred             CeEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEEC
Confidence            5789999999999999999999998865  45666654

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=83.36  E-value=1.5  Score=31.40  Aligned_cols=34  Identities=15%  Similarity=0.163  Sum_probs=27.6

Q ss_pred             EEEEEecCcCCchhHHHHHHHHHhcc--cceEEEec
Q psy4713           6 LILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIRL   39 (103)
Q Consensus         6 lIiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~i   39 (103)
                      .++.|+|.+||||--++..|...|..  .++.++..
T Consensus         5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~   40 (169)
T 1xjc_A            5 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKH   40 (169)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEe
Confidence            47899999999999999999998865  45666663

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=83.25  E-value=1.2  Score=37.04  Aligned_cols=36  Identities=17%  Similarity=0.377  Sum_probs=27.8

Q ss_pred             CeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchh
Q psy4713           4 PKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAP   42 (103)
Q Consensus         4 pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~p   42 (103)
                      |+-=||+.|..|+||=.+|..++..++   +.++++|.+
T Consensus       215 ~prGvLLyGPPGTGKTlLAkAiA~e~~---~~fi~v~~s  250 (437)
T 4b4t_I          215 PPKGVILYGAPGTGKTLLAKAVANQTS---ATFLRIVGS  250 (437)
T ss_dssp             CCSEEEEESSTTTTHHHHHHHHHHHHT---CEEEEEESG
T ss_pred             CCCCCceECCCCchHHHHHHHHHHHhC---CCEEEEEHH
Confidence            334578899999999999999999986   455555543

>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}

Probab=83.12  E-value=1.4  Score=33.29  Aligned_cols=35  Identities=14%  Similarity=0.221  Sum_probs=28.4

Q ss_pred             eEEEEEecCcCCchhHHHHHHHHHhcc--cceEEEec
Q psy4713           5 KLILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIRL   39 (103)
Q Consensus         5 klIiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~i   39 (103)
                      +.|+++|||-|+||=.+|-.++..+.+  .++.+|..
T Consensus        14 ~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~   50 (324)
T 3zq6_A           14 TTFVFIGGKGGVGKTTISAATALWMARSGKKTLVIST   50 (324)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEeC
Confidence            689999999999999999999888765  34555543

>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}

Probab=83.01  E-value=4  Score=30.77  Aligned_cols=56  Identities=11%  Similarity=0.130  Sum_probs=40.9

Q ss_pred             CeEEEEEecCcCCchhHHHHHHHHHhcc--cceEEEecchhhH----HHHHHHcCccHHHhc
Q psy4713           4 PKLILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIRLSAPIK----SHWAKQNGLEMDKLL   59 (103)
Q Consensus         4 pklIiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~iS~piK----~~yA~~~glDl~~LL   59 (103)
                      |--+++|+|.+|+||=-++-.+......  ..+.++++-.|..    |..+...|.++++|.
T Consensus        67 ~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE~s~~~l~~R~~~~~~~i~~~~l~  128 (315)
T 3bh0_A           67 RRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEMGKKENIKRLIVTAGSINAQKIK  128 (315)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESSSCHHHHHHHHHHHHTTCCHHHHH
T ss_pred             CCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECCCCHHHHHHHHHHHHcCCCHHHHh
Confidence            4457899999999999777766654432  4677888877654    444556799999884

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=82.96  E-value=6.4  Score=31.09  Aligned_cols=57  Identities=11%  Similarity=0.239  Sum_probs=41.9

Q ss_pred             CeEEEEEecCcCCchhHHHHHHHHHhcc---cceEEEecchhhHH----HHHHHcCccHHHhcC
Q psy4713           4 PKLILLFSGKRKSGKDFLTDYLLERIGS---QHCAIIRLSAPIKS----HWAKQNGLEMDKLLG   60 (103)
Q Consensus         4 pklIiL~sGKrksGKDy~a~~l~~~l~~---~~~~iv~iS~piK~----~yA~~~glDl~~LL~   60 (103)
                      |.-+++|.|.+|+||=-++..+...+..   ..+.++++..|-.+    -.+...|.++++|..
T Consensus       202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~s~~~l~~r~~~~~~~~~~~~l~~  265 (454)
T 2r6a_A          202 RSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEMSAQQLVMRMLCAEGNINAQNLRT  265 (454)
T ss_dssp             TTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSSCHHHHHHHHHHHHHTCCHHHHHT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHHHcCCCHHHHhc
Confidence            3447899999999999888777766532   36888887766433    335678999999854

>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*

Probab=82.84  E-value=1.8  Score=30.38  Aligned_cols=36  Identities=19%  Similarity=0.363  Sum_probs=29.7

Q ss_pred             CeEEEEEecCcCCchhHHHHHHHHHhcc--cceEEEec
Q psy4713           4 PKLILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIRL   39 (103)
Q Consensus         4 pklIiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~i   39 (103)
                      +++|.+.|+|.|+||=.+|-.|+..|.+  .++.+|-.
T Consensus         2 ~~vi~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~   39 (260)
T 3q9l_A            2 ARIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDF   39 (260)
T ss_dssp             CEEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred             CeEEEEECCCCCCcHHHHHHHHHHHHHhCCCcEEEEEC
Confidence            5789999999999999999999998875  45555544

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=82.84  E-value=0.97  Score=35.95  Aligned_cols=36  Identities=14%  Similarity=0.158  Sum_probs=27.1

Q ss_pred             EEEEEecCcCCchhHHHHHHHHHhccc--ceEEEecch
Q psy4713           6 LILLFSGKRKSGKDFLTDYLLERIGSQ--HCAIIRLSA   41 (103)
Q Consensus         6 lIiL~sGKrksGKDy~a~~l~~~l~~~--~~~iv~iS~   41 (103)
                      --++|+|.+|+||-.++..+...+...  ...++.++.
T Consensus       131 ~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~  168 (440)
T 2z4s_A          131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITS  168 (440)
T ss_dssp             CCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeH
Confidence            357899999999999999999988432  344444443

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=82.69  E-value=2  Score=31.94  Aligned_cols=31  Identities=23%  Similarity=0.423  Sum_probs=25.2

Q ss_pred             EEEecCcCCchhHHHHHHHHHhcccceEEEecch
Q psy4713           8 LLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSA   41 (103)
Q Consensus         8 iL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~   41 (103)
                      +++.|.+||||=.++..+...++.   ..+.+++
T Consensus        47 vlL~Gp~GtGKTtLakala~~~~~---~~i~i~g   77 (274)
T 2x8a_A           47 VLLAGPPGCGKTLLAKAVANESGL---NFISVKG   77 (274)
T ss_dssp             EEEESSTTSCHHHHHHHHHHHTTC---EEEEEET
T ss_pred             EEEECCCCCcHHHHHHHHHHHcCC---CEEEEEc
Confidence            899999999999999999988764   3455543

>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*

Probab=82.67  E-value=1.6  Score=29.46  Aligned_cols=35  Identities=20%  Similarity=0.230  Sum_probs=28.9

Q ss_pred             eEEEEEecCcCCchhHHHHHHHHHhcc--cceEEEec
Q psy4713           5 KLILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIRL   39 (103)
Q Consensus         5 klIiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~i   39 (103)
                      ++|.+.|+|-|+||=.+|-.|+..+..  .++.+|-.
T Consensus         2 ~vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD~   38 (206)
T 4dzz_A            2 KVISFLNPKGGSGKTTAVINIATALSRSGYNIAVVDT   38 (206)
T ss_dssp             EEEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred             eEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEEC
Confidence            678888999999999999999988876  45666654

>2p6w_A VP54, putative glycosyltransferase (mannosyltransferase in glycosylating the PBCV-1 major...; HET: FLC; 1.60A {Paramecium bursaria chlorella virus 1} PDB: 2p72_A* 2p73_A*

Probab=82.48  E-value=0.28  Score=37.95  Aligned_cols=38  Identities=21%  Similarity=0.368  Sum_probs=25.4

Q ss_pred             CCCCeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHHHcCccH
Q psy4713           1 MTQPKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQNGLEM   55 (103)
Q Consensus         1 ~~~pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~~~glDl   55 (103)
                      |+.|+ |+|+||+.-                ..|.+++-|---|..||+.||.++
T Consensus         3 ~~~p~-IllvtGs~p----------------~ew~yl~ksiKNK~DYArrHGYel   40 (213)
T 2p6w_A            3 MTTPC-ITILSGHFP----------------KETIYARKTKELVEEYCSIHGYNF   40 (213)
T ss_dssp             ---CC-EEEEEECSC----------------TTCHHHHHHHHHHHHHHHHHTCEE
T ss_pred             CCCce-EEEEeCCCC----------------CCcHHHHHHHHHHHHHHHHcCCeE
Confidence            55665 677888753                245566666677999999999765

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=82.40  E-value=1.2  Score=30.17  Aligned_cols=24  Identities=17%  Similarity=0.299  Sum_probs=21.2

Q ss_pred             EEEEEecCcCCchhHHHHHHHHHh
Q psy4713           6 LILLFSGKRKSGKDFLTDYLLERI   29 (103)
Q Consensus         6 lIiL~sGKrksGKDy~a~~l~~~l   29 (103)
                      -|++|+|.+||||--++..|...+
T Consensus         3 ~ii~l~G~~GaGKSTl~~~L~~~~   26 (189)
T 2bdt_A            3 KLYIITGPAGVGKSTTCKRLAAQL   26 (189)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             eEEEEECCCCCcHHHHHHHHhccc
Confidence            478899999999999999998754

>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A

Probab=82.32  E-value=1.6  Score=31.19  Aligned_cols=37  Identities=24%  Similarity=0.284  Sum_probs=29.7

Q ss_pred             CCeEEEEEecCcCCchhHHHHHHHHHhcc-cceEEEec
Q psy4713           3 QPKLILLFSGKRKSGKDFLTDYLLERIGS-QHCAIIRL   39 (103)
Q Consensus         3 ~pklIiL~sGKrksGKDy~a~~l~~~l~~-~~~~iv~i   39 (103)
                      ++++|.++|+|-|+||=-+|-.|+..|.. .++.+|-.
T Consensus        26 ~~~vI~v~s~kGGvGKTT~a~~LA~~la~g~~VlliD~   63 (267)
T 3k9g_A           26 KPKIITIASIKGGVGKSTSAIILATLLSKNNKVLLIDM   63 (267)
T ss_dssp             CCEEEEECCSSSSSCHHHHHHHHHHHHTTTSCEEEEEE
T ss_pred             CCeEEEEEeCCCCchHHHHHHHHHHHHHCCCCEEEEEC
Confidence            57899999999999999999999988863 34555543

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}

Probab=82.30  E-value=1.3  Score=35.70  Aligned_cols=25  Identities=16%  Similarity=0.304  Sum_probs=22.7

Q ss_pred             EEEEecCcCCchhHHHHHHHHHhcc
Q psy4713           7 ILLFSGKRKSGKDFLTDYLLERIGS   31 (103)
Q Consensus         7 IiL~sGKrksGKDy~a~~l~~~l~~   31 (103)
                      -+||+|.+|+||-.++..+.+.++.
T Consensus        52 ~vLL~GppGtGKTtlAr~ia~~~~~   76 (447)
T 3pvs_A           52 SMILWGPPGTGKTTLAEVIARYANA   76 (447)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred             EEEEECCCCCcHHHHHHHHHHHhCC
Confidence            5899999999999999999999753

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=82.09  E-value=1.7  Score=37.35  Aligned_cols=61  Identities=20%  Similarity=0.296  Sum_probs=35.3

Q ss_pred             EEEEecCcCCchhHHHHHHHHHhcc-------cceEEEecchhhHHHHHHHcCccHHHhcCCCCcHHHhHHHHHHHHHHH
Q psy4713           7 ILLFSGKRKSGKDFLTDYLLERIGS-------QHCAIIRLSAPIKSHWAKQNGLEMDKLLGATKYKEKYRAEMITWSEAE   79 (103)
Q Consensus         7 IiL~sGKrksGKDy~a~~l~~~l~~-------~~~~iv~iS~piK~~yA~~~glDl~~LL~d~~YKE~~R~~mi~wge~~   79 (103)
                      -+||+|.+|+||-.++..++..+..       ..+.++.++-              ..+.....|.......+-.++++.
T Consensus       193 ~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~--------------~~l~~g~~~~g~~~~~l~~~~~~~  258 (854)
T 1qvr_A          193 NPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQM--------------GSLLAGAKYRGEFEERLKAVIQEV  258 (854)
T ss_dssp             CCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-------------------------CHHHHHHHHHHHH
T ss_pred             ceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeeh--------------HHhhccCccchHHHHHHHHHHHHH
Confidence            4688999999999999999999843       1456666542              233333344444455555555555


Q ss_pred             hc
Q psy4713          80 RR   81 (103)
Q Consensus        80 R~   81 (103)
                      +.
T Consensus       259 ~~  260 (854)
T 1qvr_A          259 VQ  260 (854)
T ss_dssp             HT
T ss_pred             Hh
Confidence            54

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=81.92  E-value=1  Score=33.63  Aligned_cols=26  Identities=19%  Similarity=0.281  Sum_probs=23.3

Q ss_pred             EEEEEecCcCCchhHHHHHHHHHhcc
Q psy4713           6 LILLFSGKRKSGKDFLTDYLLERIGS   31 (103)
Q Consensus         6 lIiL~sGKrksGKDy~a~~l~~~l~~   31 (103)
                      -+|.|+|.+||||--++..|...++-
T Consensus        49 ~~i~l~G~~GsGKSTl~~~La~~lg~   74 (250)
T 3nwj_A           49 RSMYLVGMMGSGKTTVGKIMARSLGY   74 (250)
T ss_dssp             CCEEEECSTTSCHHHHHHHHHHHHTC
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhcCC
Confidence            36889999999999999999999873

>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*

Probab=81.80  E-value=1.3  Score=34.60  Aligned_cols=27  Identities=15%  Similarity=0.293  Sum_probs=22.9

Q ss_pred             eEEEEEecCcCCchhHHHHHHHHHhcc
Q psy4713           5 KLILLFSGKRKSGKDFLTDYLLERIGS   31 (103)
Q Consensus         5 klIiL~sGKrksGKDy~a~~l~~~l~~   31 (103)
                      ..-|+++|++|+||..+|..++.....
T Consensus       160 ~~~vli~Ge~GtGK~~lAr~ih~~s~r  186 (387)
T 1ny5_A          160 ECPVLITGESGVGKEVVARLIHKLSDR  186 (387)
T ss_dssp             CSCEEEECSTTSSHHHHHHHHHHHSTT
T ss_pred             CCCeEEecCCCcCHHHHHHHHHHhcCC
Confidence            345799999999999999999987654

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=81.60  E-value=2.2  Score=30.89  Aligned_cols=23  Identities=22%  Similarity=0.291  Sum_probs=21.4

Q ss_pred             EEEecCcCCchhHHHHHHHHHhc
Q psy4713           8 LLFSGKRKSGKDFLTDYLLERIG   30 (103)
Q Consensus         8 iL~sGKrksGKDy~a~~l~~~l~   30 (103)
                      ++|.|.+||||-.++..+...+.
T Consensus        76 vll~Gp~GtGKTtl~~~i~~~~~   98 (278)
T 1iy2_A           76 VLLVGPPGVGKTHLARAVAGEAR   98 (278)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHTT
T ss_pred             EEEECCCcChHHHHHHHHHHHcC
Confidence            78999999999999999998875

>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}

Probab=81.54  E-value=2.4  Score=31.96  Aligned_cols=36  Identities=17%  Similarity=0.278  Sum_probs=29.7

Q ss_pred             CCeEEEEEecCcCCchhHHHHHHHHHhcc--cceEEEe
Q psy4713           3 QPKLILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIR   38 (103)
Q Consensus         3 ~pklIiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~   38 (103)
                      ++++|.+.|+|.|+||=.+|-.|+..+.+  .++.+|-
T Consensus        91 ~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID  128 (286)
T 3la6_A           91 QNNVLMMTGVSPSIGMTFVCANLAAVISQTNKRVLLID  128 (286)
T ss_dssp             TCCEEEEEESSSSSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred             CCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEe
Confidence            46899999999999999999999999876  3455543

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=81.53  E-value=0.71  Score=33.38  Aligned_cols=30  Identities=13%  Similarity=0.096  Sum_probs=24.4

Q ss_pred             CCCCeEEEEEecCcCCchhHHHHHHHHHhc
Q psy4713           1 MTQPKLILLFSGKRKSGKDFLTDYLLERIG   30 (103)
Q Consensus         1 ~~~pklIiL~sGKrksGKDy~a~~l~~~l~   30 (103)
                      |.++..+|+|.|-.||||--+++.|++.+.
T Consensus        20 ~~~~~~~I~ieG~~GsGKST~~~~L~~~l~   49 (263)
T 1p5z_B           20 EGTRIKKISIEGNIAAGKSTFVNILKQLCE   49 (263)
T ss_dssp             ---CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred             cccCceEEEEECCCCCCHHHHHHHHHHhcC
Confidence            344557889999999999999999999985

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=81.22  E-value=2  Score=30.35  Aligned_cols=34  Identities=21%  Similarity=0.282  Sum_probs=25.5

Q ss_pred             EEEEEecCcCCchhHHHHHHHHHhcc--cceEEEec
Q psy4713           6 LILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIRL   39 (103)
Q Consensus         6 lIiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~i   39 (103)
                      -++.|+|.+||||-=+.+.|...+..  .++.++..
T Consensus         7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~   42 (174)
T 1np6_A            7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKH   42 (174)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEee
Confidence            36789999999999999988887754  23444443

>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*

Probab=81.08  E-value=2  Score=31.95  Aligned_cols=35  Identities=14%  Similarity=0.358  Sum_probs=26.9

Q ss_pred             EEEEE--ecCcCCchhHHHHHHHHHhccc------ceEEEecc
Q psy4713           6 LILLF--SGKRKSGKDFLTDYLLERIGSQ------HCAIIRLS   40 (103)
Q Consensus         6 lIiL~--sGKrksGKDy~a~~l~~~l~~~------~~~iv~iS   40 (103)
                      -.++|  +|.+|+||=.++..+.+.+...      .+.++.++
T Consensus        51 ~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~   93 (412)
T 1w5s_A           51 VNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVN   93 (412)
T ss_dssp             EEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred             CEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEE
Confidence            35666  9999999999999999887532      45666665

>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A

Probab=81.01  E-value=1.7  Score=33.73  Aligned_cols=26  Identities=19%  Similarity=0.414  Sum_probs=22.7

Q ss_pred             EEEEEecCcCCchhHHHHHHHHHhcc
Q psy4713           6 LILLFSGKRKSGKDFLTDYLLERIGS   31 (103)
Q Consensus         6 lIiL~sGKrksGKDy~a~~l~~~l~~   31 (103)
                      .-+|++|++|+||..+|..++...+.
T Consensus       153 ~~vli~GesGtGKe~lAr~ih~~s~r  178 (368)
T 3dzd_A          153 APVLITGESGTGKEIVARLIHRYSGR  178 (368)
T ss_dssp             SCEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred             hhheEEeCCCchHHHHHHHHHHhccc
Confidence            34789999999999999999988765

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=80.99  E-value=1.5  Score=32.68  Aligned_cols=22  Identities=32%  Similarity=0.454  Sum_probs=20.2

Q ss_pred             EEEEecCcCCchhHHHHHHHHH
Q psy4713           7 ILLFSGKRKSGKDFLTDYLLER   28 (103)
Q Consensus         7 IiL~sGKrksGKDy~a~~l~~~   28 (103)
                      -|||+|.+|+||-=+|..|.++
T Consensus        18 gvli~G~SGaGKStlal~L~~r   39 (181)
T 3tqf_A           18 GVLITGEANIGKSELSLALIDR   39 (181)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHc
Confidence            4899999999999999999887

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=80.90  E-value=1.6  Score=32.97  Aligned_cols=25  Identities=20%  Similarity=0.275  Sum_probs=22.6

Q ss_pred             EEEEEecCcCCchhHHHHHHHHHhc
Q psy4713           6 LILLFSGKRKSGKDFLTDYLLERIG   30 (103)
Q Consensus         6 lIiL~sGKrksGKDy~a~~l~~~l~   30 (103)
                      -+++|.|.+|+||=-++..+...++
T Consensus        52 ~~~ll~Gp~G~GKTTLa~~ia~~l~   76 (334)
T 1in4_A           52 DHVLLAGPPGLGKTTLAHIIASELQ   76 (334)
T ss_dssp             CCEEEESSTTSSHHHHHHHHHHHHT
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHhC
Confidence            4588999999999999999999885

>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}

Probab=80.68  E-value=2.2  Score=33.43  Aligned_cols=37  Identities=14%  Similarity=0.211  Sum_probs=30.4

Q ss_pred             CeEEEEEecCcCCchhHHHHHHHHHhc--c--cceEEEecc
Q psy4713           4 PKLILLFSGKRKSGKDFLTDYLLERIG--S--QHCAIIRLS   40 (103)
Q Consensus         4 pklIiL~sGKrksGKDy~a~~l~~~l~--~--~~~~iv~iS   40 (103)
                      ++-|+++|||-|+||=.+|-.++..+.  .  .++.+|..-
T Consensus        17 ~~~i~~~~gkGGvGKTt~a~~lA~~la~~~~g~~vllid~D   57 (348)
T 3io3_A           17 SLKWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLISTD   57 (348)
T ss_dssp             TCSEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEEECC
T ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECC
Confidence            467889999999999999999998887  5  466666654

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=80.30  E-value=1.7  Score=35.74  Aligned_cols=31  Identities=19%  Similarity=0.382  Sum_probs=24.9

Q ss_pred             EEEecCcCCchhHHHHHHHHHhcccceEEEecch
Q psy4713           8 LLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSA   41 (103)
Q Consensus         8 iL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~   41 (103)
                      ||+.|.+|+||-.++..+...++   +..+++|.
T Consensus        52 vLL~GppGtGKT~Laraia~~~~---~~f~~is~   82 (476)
T 2ce7_A           52 ILLVGPPGTGKTLLARAVAGEAN---VPFFHISG   82 (476)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHT---CCEEEEEG
T ss_pred             EEEECCCCCCHHHHHHHHHHHcC---CCeeeCCH
Confidence            78999999999999999999875   34444543

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=80.21  E-value=1.6  Score=34.26  Aligned_cols=40  Identities=25%  Similarity=0.454  Sum_probs=31.4

Q ss_pred             CeEEEEEecCcCCchhHHHHHHHHHhccc-ceEEEecchhh
Q psy4713           4 PKLILLFSGKRKSGKDFLTDYLLERIGSQ-HCAIIRLSAPI   43 (103)
Q Consensus         4 pklIiL~sGKrksGKDy~a~~l~~~l~~~-~~~iv~iS~pi   43 (103)
                      |.=+++|+|.+||||-=+...+...+... ...|+.+-+|+
T Consensus       122 ~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~  162 (356)
T 3jvv_A          122 PRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPI  162 (356)
T ss_dssp             SSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcH
Confidence            55589999999999998888888777653 45677777765

>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}

Probab=80.09  E-value=2.4  Score=32.64  Aligned_cols=38  Identities=5%  Similarity=0.068  Sum_probs=31.3

Q ss_pred             CCeEEEEEecCcCCchhHHHHHHHHHhcc--cceEEEecc
Q psy4713           3 QPKLILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIRLS   40 (103)
Q Consensus         3 ~pklIiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~iS   40 (103)
                      ++++|.++|||-|+||=-+|-.|+..|..  .++.+|-.-
T Consensus       142 ~~kvIav~s~KGGvGKTT~a~nLA~~La~~g~rVlliD~D  181 (373)
T 3fkq_A          142 KSSVVIFTSPCGGVGTSTVAAACAIAHANMGKKVFYLNIE  181 (373)
T ss_dssp             SCEEEEEECSSTTSSHHHHHHHHHHHHHHHTCCEEEEECC
T ss_pred             CceEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEECC
Confidence            57899999999999999999999988865  466666643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	103
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	97.73
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	97.31
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	97.24
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	97.14
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	97.08
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	96.8
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	96.68
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	96.56
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	96.47
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	96.47
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	96.47
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	96.39
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	96.33
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	96.27
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	96.08
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	95.88
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	95.82
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	95.81
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	95.76
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	95.54
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	95.52
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	95.52
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	95.47
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	95.39
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	95.36
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	95.22
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	95.12
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	95.11
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	95.11
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	95.07
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	95.07
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	95.04
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	94.83
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	94.81
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	94.71
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	94.66
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	94.58
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	94.46
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	94.31
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	94.15
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	94.12
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	93.96
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	93.93
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	93.8
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	93.8
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	93.78
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	93.68
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	93.67
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	93.51
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	93.46
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	93.19
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	93.05
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	93.05
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	92.94
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	92.92
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	92.9
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	92.65
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	92.64
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	92.47
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	92.29
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	92.28
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	92.21
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	91.97
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	91.85
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	91.54
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	91.38
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	90.83
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	90.73
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	90.23
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	90.16
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	89.79
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	89.78
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	89.56
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	88.47
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	88.37
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	88.11
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	88.07
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	87.9
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	87.81
d1w7ja2	730	Myosin S1, motor domain {Chicken (Gallus gallus),	86.86
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	86.7
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	86.24
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	85.74
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	85.35
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	85.25
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	85.01
d1hyqa_	232	Cell division regulator MinD {Archaeon Archaeoglob	84.8
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	84.44
d1kk8a2	789	Myosin S1, motor domain {Bay scallop (Aequipecten	83.71
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	83.61
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	83.48
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	83.35
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	82.75
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	82.72
d1d0xa2	712	Myosin S1, motor domain {Dictyostelium discoideum	82.64
d1br2a2	710	Myosin S1, motor domain {Chicken (Gallus gallus),	82.3
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	82.29
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	81.46
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	81.39
d2mysa2	794	Myosin S1, motor domain {Chicken (Gallus gallus),	81.08
d1lkxa_	684	Myosin S1, motor domain {Dictyostelium discoideum,	81.08
d1ls1a2	207	GTPase domain of the signal sequence recognition p	80.62
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	80.08

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.73  E-value=2.6e-05  Score=54.14  Aligned_cols=45  Identities=29%  Similarity=0.541  Sum_probs=38.9

Q ss_pred             EEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHHHcCc
Q psy4713           6 LILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQNGL   53 (103)
Q Consensus         6 lIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~~~gl   53 (103)
                      .||-|||.-|||||-+|+.|++.+|   +.+++++++++++-....+.
T Consensus         2 ~iIgiTG~igSGKsTva~~l~e~~g---~~~i~~aD~i~~~l~~~~~~   46 (241)
T d1deka_           2 KLIFLSGVKRSGKDTTADFIMSNYS---AVKYQLAGPIKDALAYAWGV   46 (241)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHSC---EEECCTTHHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhCC---CeEEcccHHHHHHHHhcCch
Confidence            4799999999999999999988764   88999999999998775443

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=97.31  E-value=0.00014  Score=46.31  Aligned_cols=25  Identities=16%  Similarity=0.356  Sum_probs=23.1

Q ss_pred             EEEEecCcCCchhHHHHHHHHHhcc
Q psy4713           7 ILLFSGKRKSGKDFLTDYLLERIGS   31 (103)
Q Consensus         7 IiL~sGKrksGKDy~a~~l~~~l~~   31 (103)
                      ||+|+|-+||||..+|..|+++|+.
T Consensus         5 iI~l~G~~GsGKsTva~~L~~~l~~   29 (178)
T d1qhxa_           5 MIILNGGSSAGKSGIVRCLQSVLPE   29 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHSSS
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcCC
Confidence            7779999999999999999999973

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.24  E-value=0.00016  Score=47.12  Aligned_cols=38  Identities=24%  Similarity=0.348  Sum_probs=31.4

Q ss_pred             CCeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecc
Q psy4713           3 QPKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLS   40 (103)
Q Consensus         3 ~pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS   40 (103)
                      ..++||-|+|-+||||-.+|+.|.+.++.....++.++
T Consensus        20 ~~~~iIgI~G~~GSGKSTla~~L~~~l~~~~~~~~~~~   57 (198)
T d1rz3a_          20 AGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFH   57 (198)
T ss_dssp             SSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhccccccceecc
Confidence            45789999999999999999999999987544454444

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=97.14  E-value=0.0011  Score=42.08  Aligned_cols=43  Identities=5%  Similarity=0.173  Sum_probs=34.9

Q ss_pred             EEEEecCcCCchhHHHHHHHHHhcc--cceEEEecchhhHHHHHH
Q psy4713           7 ILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIRLSAPIKSHWAK   49 (103)
Q Consensus         7 IiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~iS~piK~~yA~   49 (103)
                      ||+|+|-.||||--++..|+++|+.  ..+.+++..+...++...
T Consensus         3 iI~i~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~   47 (190)
T d1khta_           3 VVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAKE   47 (190)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEecCChhHHHHHH
Confidence            7899999999999999999999987  466677776666555444

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=97.08  E-value=0.00057  Score=45.64  Aligned_cols=46  Identities=15%  Similarity=0.237  Sum_probs=35.5

Q ss_pred             CCCCe-EEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHH
Q psy4713           1 MTQPK-LILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAK   49 (103)
Q Consensus         1 ~~~pk-lIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~   49 (103)
                      |.++| .||+|.|.+||||.-+|..|++.++   ...++..+.++++...
T Consensus         1 ~~~~kp~iI~i~G~pGSGKsT~a~~La~~~g---~~~i~~g~~~r~~~~~   47 (194)
T d1qf9a_           1 MEKSKPNVVFVLGGPGSGKGTQCANIVRDFG---WVHLSAGDLLRQEQQS   47 (194)
T ss_dssp             CCCCCCEEEEEEESTTSSHHHHHHHHHHHHC---CEEEEHHHHHHHHHHT
T ss_pred             CCCCCCcEEEEECCCCCCHHHHHHHHHHHHC---CceEchhhHHHHHhhh
Confidence            44433 5889999999999999999999985   5566777777765543

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.80  E-value=0.00058  Score=45.98  Aligned_cols=59  Identities=12%  Similarity=0.301  Sum_probs=43.6

Q ss_pred             CCCeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHHHc--CccHHHhcCCCCc
Q psy4713           2 TQPKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQN--GLEMDKLLGATKY   64 (103)
Q Consensus         2 ~~pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~~~--glDl~~LL~d~~Y   64 (103)
                      .+|++ |+|.|..||||.=++..|++.+|   ...++.++-++++-...+  |..+.+.+..+..
T Consensus         6 ~~~~i-I~l~G~pGSGKsT~a~~La~~~g---~~~is~g~llr~~~~~~~~~~~~~~~~~~~~~~   66 (194)
T d3adka_           6 KKSKI-IFVVGGPGSGKGTQCEKIVQKYG---YTHLSTGDLLRAEVSSGSARGKMLSEIMEKGQL   66 (194)
T ss_dssp             HTSCE-EEEEECTTSSHHHHHHHHHHHTC---CEEEEHHHHHHHHHHHTCHHHHHHHHHHTTTCC
T ss_pred             cCCcE-EEEECCCCCCHHHHHHHHHHHhC---CeeEeccHHHHHHHHHhHhhhhhhHHHHhhccC
Confidence            35555 55569999999999999999975   667888888887666533  5566666666554

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=96.68  E-value=0.0015  Score=41.49  Aligned_cols=40  Identities=23%  Similarity=0.375  Sum_probs=30.9

Q ss_pred             CCCCeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHH
Q psy4713           1 MTQPKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKS   45 (103)
Q Consensus         1 ~~~pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~   45 (103)
                      |.-|+++  |+|-+||||--++..|+++++   ..++.+.+.+++
T Consensus         2 m~~~~I~--i~G~pGsGKTTia~~La~~l~---~~~i~~~~~~~~   41 (173)
T d1rkba_           2 MLLPNIL--LTGTPGVGKTTLGKELASKSG---LKYINVGDLARE   41 (173)
T ss_dssp             CCCCCEE--EECSTTSSHHHHHHHHHHHHC---CEEEEHHHHHHH
T ss_pred             CCCCEEE--EECCCCCCHHHHHHHHHHHHC---CcEEechHHHHH
Confidence            4545544  789999999999999999986   556777666654

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=96.56  E-value=0.0074  Score=38.33  Aligned_cols=37  Identities=22%  Similarity=0.205  Sum_probs=29.2

Q ss_pred             EEEEecCcCCchhHHHHHHHHHhcccc--eEEEecchhh
Q psy4713           7 ILLFSGKRKSGKDFLTDYLLERIGSQH--CAIIRLSAPI   43 (103)
Q Consensus         7 IiL~sGKrksGKDy~a~~l~~~l~~~~--~~iv~iS~pi   43 (103)
                      ||+|+|-.||||--+++.|+++|+...  +.+++-.+..
T Consensus         3 iivi~G~~GsGKTT~~~~La~~L~~~~~~~~~~~~~d~~   41 (194)
T d1nksa_           3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFM   41 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCcc
Confidence            789999999999999999999998744  4444544433

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=96.47  E-value=0.0018  Score=40.87  Aligned_cols=39  Identities=23%  Similarity=0.140  Sum_probs=28.2

Q ss_pred             CeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHH
Q psy4713           4 PKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKS   45 (103)
Q Consensus         4 pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~   45 (103)
                      ++ ||+|+|-+||||-.+|..|....  ..+.+++..+..+.
T Consensus         2 kk-lIii~G~pGsGKTTla~~L~~~~--~~~~~~~~d~~~~~   40 (152)
T d1ly1a_           2 KK-IILTIGCPGSGKSTWAREFIAKN--PGFYNINRDDYRQS   40 (152)
T ss_dssp             CE-EEEEECCTTSSHHHHHHHHHHHS--TTEEEECHHHHHHH
T ss_pred             CE-EEEEECCCCCCHHHHHHHHHHhC--CCCEEechHHHHHH
Confidence            34 45689999999999999887654  35666666655443

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=96.47  E-value=0.0021  Score=40.96  Aligned_cols=38  Identities=26%  Similarity=0.341  Sum_probs=29.9

Q ss_pred             EEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHH
Q psy4713           7 ILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHW   47 (103)
Q Consensus         7 IiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~y   47 (103)
                      ||+|+|.+||||--++..|+++++   ..++.++...-+.+
T Consensus         6 iI~l~G~~GsGKSTia~~La~~lg---~~~~~~~~d~~~~~   43 (176)
T d1zp6a1           6 ILLLSGHPGSGKSTIAEALANLPG---VPKVHFHSDDLWGY   43 (176)
T ss_dssp             EEEEEECTTSCHHHHHHHHHTCSS---SCEEEECTTHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC---CCEEEecHHHHHHH
Confidence            688999999999999999999875   45566766544443

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=96.47  E-value=0.0012  Score=41.36  Aligned_cols=24  Identities=17%  Similarity=0.329  Sum_probs=22.1

Q ss_pred             EEEEecCcCCchhHHHHHHHHHhc
Q psy4713           7 ILLFSGKRKSGKDFLTDYLLERIG   30 (103)
Q Consensus         7 IiL~sGKrksGKDy~a~~l~~~l~   30 (103)
                      +|+|+|..||||-.+|..|++.++
T Consensus         4 lI~i~G~~GsGKTTva~~L~~~~~   27 (176)
T d2bdta1           4 LYIITGPAGVGKSTTCKRLAAQLD   27 (176)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcC
Confidence            577889999999999999999986

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=96.39  E-value=0.0026  Score=41.88  Aligned_cols=51  Identities=22%  Similarity=0.425  Sum_probs=36.9

Q ss_pred             CCCCeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHHHcCccHHHhcCC
Q psy4713           1 MTQPKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQNGLEMDKLLGA   61 (103)
Q Consensus         1 ~~~pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~~~glDl~~LL~d   61 (103)
                      |++|  || ++|-+||||--++..|+++||   +..+.+-.    ...+.+|..+.+++.+
T Consensus         1 M~~~--Ii-l~G~~GsGKSTia~~LA~~Lg---~~~id~D~----~ie~~~g~~i~ei~~~   51 (170)
T d1e6ca_           1 MTEP--IF-MVGARGCGMTTVGRELARALG---YEFVDTDI----FMQHTSGMTVADVVAA   51 (170)
T ss_dssp             CCCC--EE-EESCTTSSHHHHHHHHHHHHT---CEEEEHHH----HHHHHHCSCHHHHHHH
T ss_pred             CCCC--EE-EECCCCCCHHHHHHHHHHHhC---CCEEehhh----hhhhhhhhhhhhhhcc
Confidence            5655  44 569999999999999999996   44555432    2345678888887654

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=96.33  E-value=0.0029  Score=42.07  Aligned_cols=37  Identities=24%  Similarity=0.343  Sum_probs=28.0

Q ss_pred             CeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhH
Q psy4713           4 PKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIK   44 (103)
Q Consensus         4 pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK   44 (103)
                      .++||-|||-.||||+-+|+.|.+ +|   +.+++...-.+
T Consensus         2 ~p~IIgitG~~gSGKstva~~l~~-~g---~~~~~~D~~~~   38 (191)
T d1uf9a_           2 HPIIIGITGNIGSGKSTVAALLRS-WG---YPVLDLDALAA   38 (191)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHH-TT---CCEEEHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH-CC---CeEEEccHHHH
Confidence            578999999999999999999965 44   55565433333

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.27  E-value=0.0021  Score=41.08  Aligned_cols=28  Identities=18%  Similarity=0.280  Sum_probs=23.4

Q ss_pred             CeEEEEEecCcCCchhHHHHHHHHHhcc
Q psy4713           4 PKLILLFSGKRKSGKDFLTDYLLERIGS   31 (103)
Q Consensus         4 pklIiL~sGKrksGKDy~a~~l~~~l~~   31 (103)
                      .+-|++|+|-+||||.-++..|+++++.
T Consensus         5 ~~~iivl~G~~GsGKsT~a~~La~~l~~   32 (171)
T d1knqa_           5 DHHIYVLMGVSGSGKSAVASEVAHQLHA   32 (171)
T ss_dssp             TSEEEEEECSTTSCHHHHHHHHHHHHTC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            3445557899999999999999999964

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.08  E-value=0.011  Score=38.46  Aligned_cols=35  Identities=11%  Similarity=0.241  Sum_probs=28.5

Q ss_pred             eEEEEEecCcCCchhHHHHHHHHHhcc--cceEEEec
Q psy4713           5 KLILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIRL   39 (103)
Q Consensus         5 klIiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~i   39 (103)
                      +.||++.|-+||||=.+|..|++.++.  .++.+++.
T Consensus         2 p~li~l~GlpgsGKSTla~~L~~~l~~~~~~~~~~~~   38 (213)
T d1bifa1           2 PTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNV   38 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHhcCCCCeEEcc
Confidence            468889999999999999999999876  44555543

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.88  E-value=0.0068  Score=40.82  Aligned_cols=36  Identities=19%  Similarity=0.359  Sum_probs=30.5

Q ss_pred             CeEEEEEecCcCCchhHHHHHHHHHhccc-------ceEEEec
Q psy4713           4 PKLILLFSGKRKSGKDFLTDYLLERIGSQ-------HCAIIRL   39 (103)
Q Consensus         4 pklIiL~sGKrksGKDy~a~~l~~~l~~~-------~~~iv~i   39 (103)
                      +++||-|||-+||||--+|..|.+.|+..       .+.|+..
T Consensus         1 ~P~iIgI~G~~gSGKSTla~~L~~~l~~~~~~~~~~~~~vi~~   43 (213)
T d1uj2a_           1 EPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQ   43 (213)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEG
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHhchhccccCCCceEEEec
Confidence            36899999999999999999999999762       4667665

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.82  E-value=0.0035  Score=42.88  Aligned_cols=29  Identities=10%  Similarity=0.143  Sum_probs=26.3

Q ss_pred             CCeEEEEEecCcCCchhHHHHHHHHHhcc
Q psy4713           3 QPKLILLFSGKRKSGKDFLTDYLLERIGS   31 (103)
Q Consensus         3 ~pklIiL~sGKrksGKDy~a~~l~~~l~~   31 (103)
                      ++-+.|+|||-++||||++|..|++.|.+
T Consensus         4 kqgf~i~~tg~~~~gk~~ia~al~~~l~q   32 (122)
T d1g8fa3           4 KQGFSIVLGNSLTVSREQLSIALLSTFLQ   32 (122)
T ss_dssp             GCCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred             ccceEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            45688999999999999999999999965

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=95.81  E-value=0.0046  Score=38.85  Aligned_cols=28  Identities=21%  Similarity=0.370  Sum_probs=25.6

Q ss_pred             CeEEEEEecCcCCchhHHHHHHHHHhcc
Q psy4713           4 PKLILLFSGKRKSGKDFLTDYLLERIGS   31 (103)
Q Consensus         4 pklIiL~sGKrksGKDy~a~~l~~~l~~   31 (103)
                      +-.||++||-+||||-=+|..|+++|+.
T Consensus         5 ~g~~I~l~G~~GsGKTTia~~La~~L~~   32 (183)
T d1m8pa3           5 QGFTIFLTGYMNSGKDAIARALQVTLNQ   32 (183)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            4479999999999999999999999975

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=95.76  E-value=0.0037  Score=43.79  Aligned_cols=62  Identities=24%  Similarity=0.222  Sum_probs=40.5

Q ss_pred             CCCeEEEEEecCcCCchhHHHHHHHHHhcc-cceEEEecchhhHHHHHHHcCccHHHhcCCCCcHHHhHHHHH
Q psy4713           2 TQPKLILLFSGKRKSGKDFLTDYLLERIGS-QHCAIIRLSAPIKSHWAKQNGLEMDKLLGATKYKEKYRAEMI   73 (103)
Q Consensus         2 ~~pklIiL~sGKrksGKDy~a~~l~~~l~~-~~~~iv~iS~piK~~yA~~~glDl~~LL~d~~YKE~~R~~mi   73 (103)
                      .++..||.|||-+||||--+|..|..++.. ....++.+.+-.=|+          .|..|-.|.+..|..++
T Consensus        21 ~~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD~iR~----------~l~~~l~ys~~~r~~~~   83 (208)
T d1m7ga_          21 NQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIRF----------GLNKDLGFSEADRNENI   83 (208)
T ss_dssp             TSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHTT----------TTTTTCCSSHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCceEEEEcchHHHH----------hhcCCCCCChhHHHHHH
Confidence            346679999999999999999999998854 334444444432111          12234456666665554

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=95.54  E-value=0.0051  Score=39.09  Aligned_cols=27  Identities=15%  Similarity=0.391  Sum_probs=23.9

Q ss_pred             CeEEEEEecCcCCchhHHHHHHHHHhc
Q psy4713           4 PKLILLFSGKRKSGKDFLTDYLLERIG   30 (103)
Q Consensus         4 pklIiL~sGKrksGKDy~a~~l~~~l~   30 (103)
                      +...|+|+|.+||||--+++.|++.++
T Consensus         4 k~~~I~i~G~~GsGKTT~~~~La~~l~   30 (174)
T d1y63a_           4 KGINILITGTPGTGKTSMAEMIAAELD   30 (174)
T ss_dssp             SSCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHHhC
Confidence            445788899999999999999999985

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.52  E-value=0.0078  Score=39.52  Aligned_cols=39  Identities=21%  Similarity=0.284  Sum_probs=32.6

Q ss_pred             EEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHH
Q psy4713           8 LLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAK   49 (103)
Q Consensus         8 iL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~   49 (103)
                      |+|.|.+||||.-+|+.|++.++   +..++.++.+.++...
T Consensus         3 I~i~G~pGsGKsT~a~~La~~~g---~~~i~~~~l~~~~~~~   41 (181)
T d2cdna1           3 VLLLGPPGAGKGTQAVKLAEKLG---IPQISTGELFRRNIEE   41 (181)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHT---CCEEEHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHHC---CceEchHHHHHHHHhh
Confidence            66779999999999999999985   6677888888876544

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=95.52  E-value=0.0062  Score=40.43  Aligned_cols=39  Identities=21%  Similarity=0.267  Sum_probs=30.2

Q ss_pred             EEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHH
Q psy4713           6 LILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHW   47 (103)
Q Consensus         6 lIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~y   47 (103)
                      ++|+|.|.+||||.=+++.|++.++   ...|+.++.+++..
T Consensus         4 m~I~i~GppGsGKsT~a~~La~~~~---~~~is~~~~~~~~~   42 (189)
T d1zaka1           4 LKVMISGAPASGKGTQCELIKTKYQ---LAHISAGDLLRAEI   42 (189)
T ss_dssp             CCEEEEESTTSSHHHHHHHHHHHHC---CEECCHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHC---CcEEehhHHHHHhh
Confidence            3567899999999999999999985   44456666666543

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=95.47  E-value=0.014  Score=39.29  Aligned_cols=59  Identities=15%  Similarity=0.277  Sum_probs=45.4

Q ss_pred             CeEEEEEecCcCCchhHHHHHHHHHhcc--cceEEEecchhhHH--HHHHHcCccHHHhcCCC
Q psy4713           4 PKLILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIRLSAPIKS--HWAKQNGLEMDKLLGAT   62 (103)
Q Consensus         4 pklIiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~iS~piK~--~yA~~~glDl~~LL~d~   62 (103)
                      |.-+++|+|..||||--++..++.....  ..+..++.-.+...  .++...|.|.+++...+
T Consensus        25 ~gsl~li~G~pGsGKT~l~~qia~~~~~~~~~~~~is~e~~~~~~~~~~~~~~~~~~~~~~~~   87 (242)
T d1tf7a2          25 KDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMDFEEMERQN   87 (242)
T ss_dssp             SSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSCHHHHHHHHHTTSCCHHHHHHTT
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHHHHHHhccccceeeccCCHHHHHHHHHHcCCChHHHhhcC
Confidence            5568999999999999999888877644  56777777666665  46777899998865543

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.39  E-value=0.0043  Score=42.29  Aligned_cols=24  Identities=17%  Similarity=0.398  Sum_probs=20.5

Q ss_pred             EEEecCcCCchhHHHHHHHHHhcc
Q psy4713           8 LLFSGKRKSGKDFLTDYLLERIGS   31 (103)
Q Consensus         8 iL~sGKrksGKDy~a~~l~~~l~~   31 (103)
                      |+|+|++|||||=+.+.|.+....
T Consensus         6 ivl~Gpsg~GK~tl~~~L~~~~~~   29 (178)
T d1kgda_           6 LVLLGAHGVGRRHIKNTLITKHPD   29 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHCTT
T ss_pred             EEEECCCCCCHHHHHHHHHHhCCc
Confidence            566999999999999999887643

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.36  E-value=0.0037  Score=40.48  Aligned_cols=26  Identities=19%  Similarity=0.195  Sum_probs=24.1

Q ss_pred             EEEEEecCcCCchhHHHHHHHHHhcc
Q psy4713           6 LILLFSGKRKSGKDFLTDYLLERIGS   31 (103)
Q Consensus         6 lIiL~sGKrksGKDy~a~~l~~~l~~   31 (103)
                      .||++||-+||||--+|..|+++++.
T Consensus        20 ~vI~L~G~pGSGKTTiAk~La~~l~~   45 (195)
T d1x6va3          20 CTVWLTGLSGAGKTTVSMALEEYLVC   45 (195)
T ss_dssp             EEEEEESSCHHHHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            57889999999999999999999976

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.22  E-value=0.0093  Score=39.61  Aligned_cols=40  Identities=10%  Similarity=0.193  Sum_probs=30.1

Q ss_pred             CCeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHH
Q psy4713           3 QPKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKS   45 (103)
Q Consensus         3 ~pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~   45 (103)
                      ++.=||+|.|..||||.-+|..|++.++   ..-++..+-+..
T Consensus         6 ~~~~iI~i~GppGSGKsT~a~~La~~~g---~~~is~gdl~R~   45 (196)
T d1ukza_           6 DQVSVIFVLGGPGAGKGTQCEKLVKDYS---FVHLSAGDLLRA   45 (196)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHHHSS---CEEEEHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHhC---CeEEehhHHHHH
Confidence            3445677779999999999999999985   455665555543

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.12  E-value=0.0071  Score=40.11  Aligned_cols=25  Identities=32%  Similarity=0.505  Sum_probs=22.2

Q ss_pred             EEEEecCcCCchhHHHHHHHHHhcc
Q psy4713           7 ILLFSGKRKSGKDFLTDYLLERIGS   31 (103)
Q Consensus         7 IiL~sGKrksGKDy~a~~l~~~l~~   31 (103)
                      ||+|+|.+|||||=+++.|.+.+..
T Consensus         4 iivl~GpsG~GK~tl~~~L~~~~~~   28 (182)
T d1znwa1           4 VVVLSGPSAVGKSTVVRCLRERIPN   28 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHSTT
T ss_pred             EEEEECCCCCCHHHHHHHHHhhCCC
Confidence            6779999999999999999988753

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=95.11  E-value=0.01  Score=39.02  Aligned_cols=39  Identities=18%  Similarity=0.252  Sum_probs=29.6

Q ss_pred             EEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHH
Q psy4713           7 ILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAK   49 (103)
Q Consensus         7 IiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~   49 (103)
                      ||+|.|..||||.=.|..|+++++   ..-+|- |-+=|+.|+
T Consensus         5 iI~I~GppGSGKgT~ak~La~~~g---l~~iSt-GdLlR~~a~   43 (225)
T d1ckea_           5 VITIDGPSGAGKGTLCKAMAEALQ---WHLLDS-GAIYRVLAL   43 (225)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHT---CEEEEH-HHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC---CcEECH-HHHHHHHHH
Confidence            889999999999999999999996   222332 555555544

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=95.11  E-value=0.012  Score=43.21  Aligned_cols=59  Identities=25%  Similarity=0.402  Sum_probs=47.9

Q ss_pred             eEEEEEecCcCCchhHHHHHHHHHhcc--cceEEEecchhhHHHHHHHcCccHHHhcCCCC
Q psy4713           5 KLILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIRLSAPIKSHWAKQNGLEMDKLLGATK   63 (103)
Q Consensus         5 klIiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~iS~piK~~yA~~~glDl~~LL~d~~   63 (103)
                      --|+.|.|..+|||=.++-.+......  ..|..+.--+..-.+||+..|+|+++++--.+
T Consensus        54 g~itei~G~~gsGKTtl~l~~~~~~q~~g~~~vyidtE~~~~~~~a~~~Gvd~d~v~~~~~  114 (263)
T d1u94a1          54 GRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQP  114 (263)
T ss_dssp             TSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECC
T ss_pred             ceEEEEecCCCcHHHHHHHHHHHHHHcCCCEEEEEccccccCHHHHHHhCCCHHHEEEecC
Confidence            358899999999999988777666544  56677777788888999999999999885544

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.07  E-value=0.0075  Score=40.56  Aligned_cols=24  Identities=25%  Similarity=0.387  Sum_probs=21.4

Q ss_pred             EEEecCcCCchhHHHHHHHHHhcc
Q psy4713           8 LLFSGKRKSGKDFLTDYLLERIGS   31 (103)
Q Consensus         8 iL~sGKrksGKDy~a~~l~~~l~~   31 (103)
                      |+|+|.+|||||=+++.|.+.+..
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~~~~   27 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAEYPD   27 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHCTT
T ss_pred             EEEECCCCCCHHHHHHHHHHhCCc
Confidence            679999999999999999988753

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=95.07  E-value=0.015  Score=37.99  Aligned_cols=53  Identities=15%  Similarity=0.305  Sum_probs=38.7

Q ss_pred             EEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHHH--cCccHHHhcCCC
Q psy4713           7 ILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQ--NGLEMDKLLGAT   62 (103)
Q Consensus         7 IiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~~--~glDl~~LL~d~   62 (103)
                      .|+|.|..||||.=++..|++.++   +..++.++.++++.+..  .|..+.+.+..+
T Consensus         2 ~I~i~G~pGSGKsT~~~~La~~~~---~~~i~~~~llr~~~~~~~~~~~~i~~~~~~g   56 (179)
T d1e4va1           2 RIILLGAPVAGKGTQAQFIMEKYG---IPQISTGDMLRAAVKSGSELGKQAKDIMDAG   56 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHC---CCEEEHHHHHHHHHHHTCTTTGGGHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC---CceechhhHhHHhhccCChHHHHHHHHHHcC
Confidence            467789999999999999999985   66778888887765542  344444444443

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.04  E-value=0.0084  Score=40.66  Aligned_cols=24  Identities=29%  Similarity=0.436  Sum_probs=21.5

Q ss_pred             EEEecCcCCchhHHHHHHHHHhcc
Q psy4713           8 LLFSGKRKSGKDFLTDYLLERIGS   31 (103)
Q Consensus         8 iL~sGKrksGKDy~a~~l~~~l~~   31 (103)
                      |+|+|.+||||+-+++.|.+.+..
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~~~~~   26 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQEHSS   26 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHTT
T ss_pred             EEEECCCCCCHHHHHHHHHHhCCC
Confidence            569999999999999999998753

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.83  E-value=0.024  Score=37.19  Aligned_cols=38  Identities=16%  Similarity=0.322  Sum_probs=29.6

Q ss_pred             eEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHH
Q psy4713           5 KLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKS   45 (103)
Q Consensus         5 klIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~   45 (103)
                      +.||+|.|..||||.=.|..|++.+|   ...|+..+-+++
T Consensus         1 p~iI~i~GppGSGKsT~a~~La~~~g---~~~i~~g~llR~   38 (194)
T d1teva_           1 PLVVFVLGGPGAGKGTQCARIVEKYG---YTHLSAGELLRD   38 (194)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHC---CEEEEHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHhC---CceEcHHHHHHH
Confidence            36889999999999999999999985   444555555543

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=94.81  E-value=0.012  Score=40.13  Aligned_cols=31  Identities=19%  Similarity=0.434  Sum_probs=25.2

Q ss_pred             EEEEEecCcCCchhHHHHHHHHHhcccceEEEecc
Q psy4713           6 LILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLS   40 (103)
Q Consensus         6 lIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS   40 (103)
                      +||-|||..||||..+++.+.+ +|   +.+++.-
T Consensus         3 ~iIgITG~igSGKStv~~~l~~-~G---~~vidaD   33 (205)
T d1jjva_           3 YIVGLTGGIGSGKTTIANLFTD-LG---VPLVDAD   33 (205)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT-TT---CCEEEHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH-CC---CeEEEch
Confidence            7899999999999999998864 44   6666643

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.71  E-value=0.025  Score=36.45  Aligned_cols=40  Identities=15%  Similarity=0.214  Sum_probs=33.2

Q ss_pred             EEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHH
Q psy4713           7 ILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAK   49 (103)
Q Consensus         7 IiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~   49 (103)
                      .|+|.|.+||||.=++..|++.++   ...++..+.++++...
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~~~---~~~i~~~~ll~~~~~~   41 (182)
T d1zina1           2 NLVLMGLPGAGKGTQAEKIVAAYG---IPHISTGDMFRAAMKE   41 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHC---CCEEEHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHC---CceechhHHHHHhhcc
Confidence            377899999999999999999984   6677888888876543

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=94.66  E-value=0.0075  Score=45.55  Aligned_cols=38  Identities=13%  Similarity=0.151  Sum_probs=28.0

Q ss_pred             CeEEEEEecCcCCchhHHHHHHHHHhccc--ceEEEecch
Q psy4713           4 PKLILLFSGKRKSGKDFLTDYLLERIGSQ--HCAIIRLSA   41 (103)
Q Consensus         4 pklIiL~sGKrksGKDy~a~~l~~~l~~~--~~~iv~iS~   41 (103)
                      ++-||-|+|-+||||-.+++.|.+.|+..  ++.+|+..+
T Consensus         3 k~pIIgIaG~SGSGKTTva~~l~~i~~~~~v~~~iI~~Ds   42 (288)
T d1a7ja_           3 KHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDA   42 (288)
T ss_dssp             TSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGG
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHHHHhhcCCCeEEEeCCC
Confidence            34489999999999999999999999874  556666553

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=94.58  E-value=0.015  Score=38.76  Aligned_cols=27  Identities=19%  Similarity=0.391  Sum_probs=24.9

Q ss_pred             CeEEEEEecCcCCchhHHHHHHHHHhc
Q psy4713           4 PKLILLFSGKRKSGKDFLTDYLLERIG   30 (103)
Q Consensus         4 pklIiL~sGKrksGKDy~a~~l~~~l~   30 (103)
                      .+++|.|+|..||||.=+|..|++.|+
T Consensus         2 k~i~IaIdGp~GsGKgT~ak~La~~lg   28 (223)
T d1q3ta_           2 KTIQIAIDGPASSGKSTVAKIIAKDFG   28 (223)
T ss_dssp             CCCEEEEECSSCSSHHHHHHHHHHHHC
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHhC
Confidence            467888999999999999999999996

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.46  E-value=0.0089  Score=40.32  Aligned_cols=71  Identities=15%  Similarity=0.179  Sum_probs=42.2

Q ss_pred             CeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHH-------HcCccHHHhcCCCCcHHHhHHHHHHHH
Q psy4713           4 PKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAK-------QNGLEMDKLLGATKYKEKYRAEMITWS   76 (103)
Q Consensus         4 pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~-------~~glDl~~LL~d~~YKE~~R~~mi~wg   76 (103)
                      ++-+|+++|-.||||-++|..+.+.++   +.+|+.. .++. +++       ......+=++++....-.+|..++.+.
T Consensus        13 ~p~liil~G~pGsGKST~a~~l~~~~~---~~~i~~D-~~~~-~~~~~~~~~~~l~~g~~vIiD~t~~~~~~R~~~~~~a   87 (172)
T d1yj5a2          13 NPEVVVAVGFPGAGKSTFIQEHLVSAG---YVHVNRD-TLGS-WQRCVSSCQAALRQGKRVVIDNTNPDVPSRARYIQCA   87 (172)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHTGGGT---CEEEEHH-HHCS-HHHHHHHHHHHHHTTCCEEEESCCCSHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHhcC---CEEEchH-HHHH-HHHHHHHHHHHHHCCCCceeeCcCCCHHHHHHHHHHH
Confidence            445777899999999999988876653   4444432 2221 111       001111123455666778888888877


Q ss_pred             HHH
Q psy4713          77 EAE   79 (103)
Q Consensus        77 e~~   79 (103)
                      ++.
T Consensus        88 ~~~   90 (172)
T d1yj5a2          88 KDA   90 (172)
T ss_dssp             HHH
T ss_pred             Hhc
Confidence            653

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=94.31  E-value=0.017  Score=35.18  Aligned_cols=23  Identities=17%  Similarity=0.394  Sum_probs=20.6

Q ss_pred             EEEecCcCCchhHHHHHHHHHhc
Q psy4713           8 LLFSGKRKSGKDFLTDYLLERIG   30 (103)
Q Consensus         8 iL~sGKrksGKDy~a~~l~~~l~   30 (103)
                      |+|+|-+||||==+|..|+++|+
T Consensus         5 I~l~G~~GsGKSTvak~La~~L~   27 (169)
T d1kaga_           5 IFLVGPMGAGKSTIGRQLAQQLN   27 (169)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHTT
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC
Confidence            55569999999999999999985

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=94.15  E-value=0.039  Score=41.50  Aligned_cols=43  Identities=14%  Similarity=0.200  Sum_probs=35.7

Q ss_pred             CCCeEEEEEecCcCCchhHHHHHHHHHhcc----cceEEEecchhhH
Q psy4713           2 TQPKLILLFSGKRKSGKDFLTDYLLERIGS----QHCAIIRLSAPIK   44 (103)
Q Consensus         2 ~~pklIiL~sGKrksGKDy~a~~l~~~l~~----~~~~iv~iS~piK   44 (103)
                      .+.++||-|+|-++|||--+|..|+..|..    .++.+|++-+=.+
T Consensus        77 ~k~P~iIGIaG~sgSGKSTla~~L~~lL~~~~~~~~v~~Is~D~F~~  123 (308)
T d1sq5a_          77 QRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFLH  123 (308)
T ss_dssp             CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBC
T ss_pred             CCCCEEEEEeCCCCCCCcHHHHHHHHHHhhhcCCCceEEEeeeeeEC
Confidence            356799999999999999999999999964    5678888766443

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=94.12  E-value=0.03  Score=39.87  Aligned_cols=35  Identities=26%  Similarity=0.444  Sum_probs=27.7

Q ss_pred             CeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecch
Q psy4713           4 PKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSA   41 (103)
Q Consensus         4 pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~   41 (103)
                      |..=||+.|.+||||-+++..+++.++   +.+++++.
T Consensus        39 p~~~vLL~GppGtGKT~la~alA~~~~---~~~~~i~~   73 (246)
T d1d2na_          39 PLVSVLLEGPPHSGKTALAAKIAEESN---FPFIKICS   73 (246)
T ss_dssp             SEEEEEEECSTTSSHHHHHHHHHHHHT---CSEEEEEC
T ss_pred             CCeEEEEECcCCCCHHHHHHHHhhccc---cccccccc
Confidence            445588999999999999999999875   44555543

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=93.96  E-value=0.027  Score=41.77  Aligned_cols=37  Identities=30%  Similarity=0.353  Sum_probs=29.2

Q ss_pred             CCeEEEEEecCcCCchhHHHHHHHHHhcccceEEEec
Q psy4713           3 QPKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRL   39 (103)
Q Consensus         3 ~pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~i   39 (103)
                      +|..++||.|.+|+||-++|..|++.+-......+++
T Consensus        51 kp~~~~lf~Gp~G~GKt~lak~la~~l~~~~~~~~~~   87 (315)
T d1qvra3          51 RPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRI   87 (315)
T ss_dssp             SCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEE
T ss_pred             CCceEEEEECCCcchHHHHHHHHHHHhcCCCcceEEE
Confidence            5777999999999999999999999873333344444

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=93.93  E-value=0.027  Score=41.40  Aligned_cols=58  Identities=22%  Similarity=0.328  Sum_probs=46.8

Q ss_pred             EEEEecCcCCchhHHHHHHHHHhcc--cceEEEecchhhHHHHHHHcCccHHHhcCCCCc
Q psy4713           7 ILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIRLSAPIKSHWAKQNGLEMDKLLGATKY   64 (103)
Q Consensus         7 IiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~iS~piK~~yA~~~glDl~~LL~d~~Y   64 (103)
                      |..|.|..+|||=+++-.+......  ..|.-+---+.+-.+||+..|+|.++++--+++
T Consensus        59 itei~G~~~sGKT~l~l~~~~~aqk~g~~v~yiDtE~~~~~~~a~~~Gvd~d~i~~~~~~  118 (268)
T d1xp8a1          59 ITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPD  118 (268)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCS
T ss_pred             EEEEecCCccchHHHHHHHHHHHHhCCCEEEEEECCccCCHHHHHHhCCCchhEEEEcCC
Confidence            8899999999999999887776654  456666666667678999999999999876554

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=93.80  E-value=0.023  Score=38.83  Aligned_cols=30  Identities=23%  Similarity=0.432  Sum_probs=24.7

Q ss_pred             eEEEEEecCcCCchhHHHHHHHHHhcccceEEEe
Q psy4713           5 KLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIR   38 (103)
Q Consensus         5 klIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~   38 (103)
                      |.||-|||-.||||.-+++.+.+. |   +.++.
T Consensus         3 k~iIgitG~igSGKStv~~~l~~~-G---~~vid   32 (208)
T d1vhta_           3 RYIVALTGGIGSGKSTVANAFADL-G---INVID   32 (208)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHT-T---CEEEE
T ss_pred             CEEEEEECCCcCCHHHHHHHHHHC-C---CcEEE
Confidence            579999999999999999998744 4   55665

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=93.80  E-value=0.049  Score=35.60  Aligned_cols=40  Identities=18%  Similarity=0.280  Sum_probs=32.0

Q ss_pred             EEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHH
Q psy4713           7 ILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAK   49 (103)
Q Consensus         7 IiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~   49 (103)
                      .|+|.|..||||.=+|..|++.++   ...++..+-++++...
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~~g---~~~is~gdllr~~~~~   41 (182)
T d1s3ga1           2 NIVLMGLPGAGKGTQADRIVEKYG---TPHISTGDMFRAAIQE   41 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHC---CCEEEHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHC---CceeeHHHHHHHhhhc
Confidence            467889999999999999999985   5566677777766554

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=93.78  E-value=0.045  Score=35.95  Aligned_cols=50  Identities=14%  Similarity=0.165  Sum_probs=35.9

Q ss_pred             EecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHH--HcCccHHHhcCCC
Q psy4713          10 FSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAK--QNGLEMDKLLGAT   62 (103)
Q Consensus        10 ~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~--~~glDl~~LL~d~   62 (103)
                      |.|..||||.=++..|++.+|   ...|+..+-++++...  ..|..+..++..+
T Consensus         8 l~G~pGSGKsT~a~~La~~~g---~~~i~~gdllr~~~~~~~~~g~~~~~~~~~g   59 (190)
T d1ak2a1           8 LLGPPGAGKGTQAPKLAKNFC---VCHLATGDMLRAMVASGSELGKKLKATMDAG   59 (190)
T ss_dssp             EECCTTSSHHHHHHHHHHHHT---CEEEEHHHHHHHHHHHTCHHHHHHHHHHHTT
T ss_pred             EECCCCCCHHHHHHHHHHHhC---CeEEeHHHHHHHHHhccCcccchhhhhhccC
Confidence            359999999999999999985   6677777778765443  2344555555544

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=93.68  E-value=0.024  Score=39.45  Aligned_cols=25  Identities=24%  Similarity=0.287  Sum_probs=22.3

Q ss_pred             EEEEEecCcCCchhHHHHHHHHHhc
Q psy4713           6 LILLFSGKRKSGKDFLTDYLLERIG   30 (103)
Q Consensus         6 lIiL~sGKrksGKDy~a~~l~~~l~   30 (103)
                      .||+|+|++|||||=+.+.|.+...
T Consensus         3 ~livi~GPSG~GK~tl~~~L~~~~p   27 (205)
T d1s96a_           3 TLYIVSAPSGAGKSSLIQALLKTQP   27 (205)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred             eEEEEECCCCCCHHHHHHHHHhhCC
Confidence            4788999999999999999998864

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=93.67  E-value=0.034  Score=38.24  Aligned_cols=35  Identities=23%  Similarity=0.398  Sum_probs=28.2

Q ss_pred             CeEEEEEecCcCCchhHHHHHHHHHhcc--cceEEEec
Q psy4713           4 PKLILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIRL   39 (103)
Q Consensus         4 pklIiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~i   39 (103)
                      |+ ||+||||=|+||=-+|-.++..|.+  .++-+|..
T Consensus         8 p~-~i~~sGKGGVGKTTvaa~lA~~lA~~G~rVLlvD~   44 (296)
T d1ihua1           8 PP-YLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVST   44 (296)
T ss_dssp             CS-EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred             Ce-EEEEECCCcChHHHHHHHHHHHHHHCCCCEEEEeC
Confidence            55 5578999999999999999999966  45666664

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.51  E-value=0.078  Score=34.25  Aligned_cols=53  Identities=19%  Similarity=0.352  Sum_probs=38.0

Q ss_pred             CeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHHHcCccHHHhcCCCCcH
Q psy4713           4 PKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQNGLEMDKLLGATKYK   65 (103)
Q Consensus         4 pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~~~glDl~~LL~d~~YK   65 (103)
                      |++| | +|-+||||=-++..|+++|+-   ..+-+-    +..++.+|..+.+++......
T Consensus         2 p~Iv-l-iG~~G~GKSTig~~La~~l~~---~fiD~D----~~ie~~~g~~i~~~~~~~g~~   54 (165)
T d2iyva1           2 PKAV-L-VGLPGSGKSTIGRRLAKALGV---GLLDTD----VAIEQRTGRSIADIFATDGEQ   54 (165)
T ss_dssp             CSEE-E-ECSTTSSHHHHHHHHHHHHTC---CEEEHH----HHHHHHHSSCHHHHHHHHCHH
T ss_pred             CcEE-E-ECCCCCCHHHHHHHHHHHhCC---CeEeec----cchhhhhhhhhhhhhhhhhHH
Confidence            6644 3 399999999999999999963   344433    445666799998887654443

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=93.46  E-value=0.059  Score=38.39  Aligned_cols=42  Identities=10%  Similarity=0.253  Sum_probs=29.5

Q ss_pred             EEEecCcCCchhHHHHHHHHHhcc--cceEEEecchhhHHHHHH
Q psy4713           8 LLFSGKRKSGKDFLTDYLLERIGS--QHCAIIRLSAPIKSHWAK   49 (103)
Q Consensus         8 iL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~iS~piK~~yA~   49 (103)
                      |||+|++|+||.++|..++..-..  .....+..+......+..
T Consensus        26 vlI~Ge~GtGK~~~A~~ih~~s~~~~~~~~~~~~~~~~~~~~~~   69 (247)
T d1ny5a2          26 VLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEA   69 (247)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHHhcCCcccccccchhhhhhhcccHH
Confidence            788999999999999999876443  344455555555554443

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=93.19  E-value=0.05  Score=40.03  Aligned_cols=55  Identities=24%  Similarity=0.412  Sum_probs=38.2

Q ss_pred             CCeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHHHcCccHHHhcCCCCcH
Q psy4713           3 QPKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQNGLEMDKLLGATKYK   65 (103)
Q Consensus         3 ~pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~~~glDl~~LL~d~~YK   65 (103)
                      .|.-++||.|.+|+||=++|..|++.++.   ..++++-.   +|...|.  ..+|+++++-.
T Consensus        50 ~p~~~~lf~Gp~GvGKT~lak~la~~l~~---~~i~~d~s---~~~~~~~--~~~l~g~~~gy  104 (315)
T d1r6bx3          50 KPVGSFLFAGPTGVGKTEVTVQLSKALGI---ELLRFDMS---EYMERHT--VSRLIGAPPGY  104 (315)
T ss_dssp             SCSEEEEEECSTTSSHHHHHHHHHHHHTC---EEEEEEGG---GCSSSSC--CSSSCCCCSCS
T ss_pred             CCceEEEEECCCcchhHHHHHHHHhhccC---CeeEeccc---cccchhh--hhhhcccCCCc
Confidence            47779999999999999999999999863   34444433   2333332  34777776533

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=93.05  E-value=0.069  Score=35.94  Aligned_cols=38  Identities=11%  Similarity=0.142  Sum_probs=30.5

Q ss_pred             EEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHH
Q psy4713           8 LLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWA   48 (103)
Q Consensus         8 iL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA   48 (103)
                      |+|.|..||||.-++..|++.++   ..-++..+-++++.+
T Consensus         9 IiliG~PGSGKtT~a~~La~~~g---~~~is~gdllr~~~~   46 (189)
T d2ak3a1           9 AAIMGAPGSGKGTVSSRITKHFE---LKHLSSGDLLRDNML   46 (189)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHBC---CEEEEHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHC---CeEEcHHHHHHHHHH
Confidence            44569999999999999999985   666788787776543

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=93.05  E-value=0.048  Score=34.05  Aligned_cols=25  Identities=24%  Similarity=0.364  Sum_probs=23.2

Q ss_pred             EEEEecCcCCchhHHHHHHHHHhcc
Q psy4713           7 ILLFSGKRKSGKDFLTDYLLERIGS   31 (103)
Q Consensus         7 IiL~sGKrksGKDy~a~~l~~~l~~   31 (103)
                      ||.|||.+||||==+++.|.+.+.+
T Consensus         4 vi~itG~~GSGKTTL~~~L~~~l~~   28 (170)
T d1np6a_           4 LLAFAAWSGTGKTTLLKKLIPALCA   28 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHH
Confidence            7999999999999999999998875

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.94  E-value=0.031  Score=34.70  Aligned_cols=25  Identities=24%  Similarity=0.263  Sum_probs=22.4

Q ss_pred             EEEEecCcCCchhHHHHHHHHHhcc
Q psy4713           7 ILLFSGKRKSGKDFLTDYLLERIGS   31 (103)
Q Consensus         7 IiL~sGKrksGKDy~a~~l~~~l~~   31 (103)
                      .|++||+.||||=.++..+...+..
T Consensus         3 ~v~ItG~~GtGKTtl~~~i~~~l~~   27 (189)
T d2i3ba1           3 HVFLTGPPGVGKTTLIHKASEVLKS   27 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHHHHH
Confidence            3789999999999999999999865

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=92.92  E-value=0.054  Score=39.90  Aligned_cols=59  Identities=20%  Similarity=0.270  Sum_probs=43.8

Q ss_pred             eEEEEEecCcCCchhHHHHHHHHHhcc--cceEEEecchhhHHHHHHHcCccHHHhcCCCC
Q psy4713           5 KLILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIRLSAPIKSHWAKQNGLEMDKLLGATK   63 (103)
Q Consensus         5 klIiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~iS~piK~~yA~~~glDl~~LL~d~~   63 (103)
                      --|..|.|..+|||=+++-.+......  ..|.-|---+.+-.+||+..|+|.++++--.+
T Consensus        60 g~i~e~~G~~~~GKT~l~l~~~~~~q~~g~~~vyIDtE~~~~~e~a~~~GvD~d~il~~~~  120 (269)
T d1mo6a1          60 GRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQP  120 (269)
T ss_dssp             SSEEEEECSSSSSHHHHHHHHHHHHHHTTCEEEEEESSCCCCHHHHHHHTCCGGGCEEECC
T ss_pred             ceeEEEecCCCcHHHHHHHHHHHHHhcCCCEEEEEECCccCCHHHHHHhCCCHHHeEEecC
Confidence            358899999999999998666655433  34444555555667999999999999775543

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.90  E-value=0.089  Score=34.42  Aligned_cols=38  Identities=24%  Similarity=0.296  Sum_probs=30.4

Q ss_pred             EEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHH
Q psy4713           8 LLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWA   48 (103)
Q Consensus         8 iL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA   48 (103)
                      |+|.|-.||||.=++..|++.++   ...++..+.+.++..
T Consensus         5 Ivl~G~pGSGKtT~a~~La~~~g---~~~i~~~d~~~~~~~   42 (180)
T d1akya1           5 MVLIGPPGAGKGTQAPNLQERFH---AAHLATGDMLRSQIA   42 (180)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHC---CEEEEHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC---CceEeccccceeccc
Confidence            44669999999999999999985   667777777776544

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=92.65  E-value=0.099  Score=33.98  Aligned_cols=55  Identities=15%  Similarity=0.208  Sum_probs=37.4

Q ss_pred             EEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHHHcCccHHHhcCCCCcHHHhHH
Q psy4713           7 ILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQNGLEMDKLLGATKYKEKYRA   70 (103)
Q Consensus         7 IiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~~~glDl~~LL~d~~YKE~~R~   70 (103)
                      |+| +|-+||||-=++..|++.|+   +..+.+..-    -++.+|..++++..+... +.+|.
T Consensus         3 I~l-iG~~GsGKsTi~k~La~~l~---~~~~d~d~~----ie~~~g~~i~~~~~~~g~-~~~r~   57 (161)
T d1viaa_           3 IVF-IGFMGSGKSTLARALAKDLD---LVFLDSDFL----IEQKFNQKVSEIFEQKRE-NFFRE   57 (161)
T ss_dssp             EEE-ECCTTSCHHHHHHHHHHHHT---CEEEEHHHH----HHHHHTSCHHHHHHHHCH-HHHHH
T ss_pred             EEE-ECCCCCCHHHHHHHHHHHhC---CCEEecCch----hhhHHhhhhhhHHHhhhh-ccchh
Confidence            444 49999999999999999995   455554433    345668888877555332 34444

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.64  E-value=0.07  Score=38.08  Aligned_cols=33  Identities=21%  Similarity=0.324  Sum_probs=26.9

Q ss_pred             eEEEEEecCcCCchhHHHHHHHHHhcccceEEEecc
Q psy4713           5 KLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLS   40 (103)
Q Consensus         5 klIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS   40 (103)
                      .--||++|.+|+||=+++..+++.++   +.++++|
T Consensus        41 ~~giLL~Gp~GtGKT~l~~ala~~~~---~~~~~~~   73 (265)
T d1r7ra3          41 SKGVLFYGPPGCGKTLLAKAIANECQ---ANFISIK   73 (265)
T ss_dssp             CCEEEEBCCTTSSHHHHHHHHHHHTT---CEEEEEC
T ss_pred             CCeEEEECCCCCcchhHHHHHHHHhC---CcEEEEE
Confidence            34588999999999999999999986   4455555

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=92.47  E-value=0.089  Score=35.27  Aligned_cols=35  Identities=26%  Similarity=0.457  Sum_probs=26.8

Q ss_pred             CCeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecch
Q psy4713           3 QPKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSA   41 (103)
Q Consensus         3 ~pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~   41 (103)
                      .|+. ||+.|..||||=++|..|++.++.   ..+.||.
T Consensus        31 ~P~~-ilL~GpPGtGKT~la~~la~~~~~---~~~~i~~   65 (273)
T d1gvnb_          31 SPTA-FLLGGQPGSGKTSLRSAIFEETQG---NVIVIDN   65 (273)
T ss_dssp             SCEE-EEEECCTTSCTHHHHHHHHHHTTT---CCEEECT
T ss_pred             CCEE-EEEECCCCCCHHHHHHHHHHHhhc---ceEEEec
Confidence            4665 778899999999999999999863   3444544

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.29  E-value=0.12  Score=38.37  Aligned_cols=39  Identities=21%  Similarity=0.370  Sum_probs=31.1

Q ss_pred             CCeEEEEEecCcCCchhHHHHHHHHHhcc-----cceEEEecch
Q psy4713           3 QPKLILLFSGKRKSGKDFLTDYLLERIGS-----QHCAIIRLSA   41 (103)
Q Consensus         3 ~pklIiL~sGKrksGKDy~a~~l~~~l~~-----~~~~iv~iS~   41 (103)
                      +.++||-|+|-.||||-.++..|.+.|.+     ..+.++||-+
T Consensus        25 ~~P~iIGi~G~qGSGKSTl~~~l~~~L~~~~~~~~~v~~iS~Dd   68 (286)
T d1odfa_          25 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDD   68 (286)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGG
T ss_pred             CCCEEEEeECCCCCCHHHHHHHHHHHHHHHhCCCcceEeeccCC
Confidence            34689999999999999999988877744     3566777755

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=92.28  E-value=0.1  Score=34.41  Aligned_cols=28  Identities=18%  Similarity=0.081  Sum_probs=24.4

Q ss_pred             CeEEEEEecCcCCchhHHHHHHHHHhcc
Q psy4713           4 PKLILLFSGKRKSGKDFLTDYLLERIGS   31 (103)
Q Consensus         4 pklIiL~sGKrksGKDy~a~~l~~~l~~   31 (103)
                      +.-.+||+|.+|+||=.++..+.+.+..
T Consensus        42 ~~~~lll~GppGtGKT~l~~~l~~~l~~   69 (276)
T d1fnna2          42 HYPRATLLGRPGTGKTVTLRKLWELYKD   69 (276)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred             CCCceEEECCCCCCHHHHHHHHHHHHhc
Confidence            3457899999999999999999999865

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=92.21  E-value=0.08  Score=38.08  Aligned_cols=56  Identities=16%  Similarity=0.173  Sum_probs=37.5

Q ss_pred             EEEEEecCcCCchhHHHHHHHHHhcccceEEEecch-----------hhHHHHHHHcCc--------cHHHhcCCC
Q psy4713           6 LILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSA-----------PIKSHWAKQNGL--------EMDKLLGAT   62 (103)
Q Consensus         6 lIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~-----------piK~~yA~~~gl--------Dl~~LL~d~   62 (103)
                      --+|++|.+||||=+++..+++.++. .+..++.|+           -+++.++.+...        |++.|+.++
T Consensus        46 ~~iLL~GppGtGKT~la~~iA~~~~~-~~~~i~~~~l~~~~~g~~~~~l~~~f~~A~~~~P~il~iDeiD~l~~~r  120 (256)
T d1lv7a_          46 KGVLMVGPPGTGKTLLAKAIAGEAKV-PFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQR  120 (256)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHTC-CEEEECSCSSTTSCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCC
T ss_pred             CeEEeeCCCCCCccHHHHHHHHHcCC-CEEEEEhHHhhhcchhHHHHHHHHHHHHHHHcCCEEEEEEChhhhCccC
Confidence            35789999999999999999999862 233333332           155656554321        677777654

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=91.97  E-value=0.07  Score=40.46  Aligned_cols=40  Identities=30%  Similarity=0.505  Sum_probs=32.1

Q ss_pred             CeEEEEEecCcCCchhHHHHHHHHHhcc-cceEEEecchhh
Q psy4713           4 PKLILLFSGKRKSGKDFLTDYLLERIGS-QHCAIIRLSAPI   43 (103)
Q Consensus         4 pklIiL~sGKrksGKDy~a~~l~~~l~~-~~~~iv~iS~pi   43 (103)
                      |+-++||.|.+|+||=.+|..|+..++. .+...++.|+.+
T Consensus       122 ~~g~~l~~G~pG~GKT~la~ala~~~~~~~~~~~~~~~~~~  162 (321)
T d1w44a_         122 ASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPL  162 (321)
T ss_dssp             ESEEEEEECSSSSCHHHHHHHHHHHHHTTSCCEEEEBSCSS
T ss_pred             CCceEEEECCCCccHHHHHHHHHHHhcCCCCeEEEEhhHhh
Confidence            7788999999999999999999999975 334456655544

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=91.85  E-value=0.11  Score=32.91  Aligned_cols=24  Identities=29%  Similarity=0.630  Sum_probs=22.2

Q ss_pred             EEEecCcCCchhHHHHHHHHHhcc
Q psy4713           8 LLFSGKRKSGKDFLTDYLLERIGS   31 (103)
Q Consensus         8 iL~sGKrksGKDy~a~~l~~~l~~   31 (103)
                      |+++|.+||||=-++..+...+..
T Consensus         3 i~I~G~~G~GKSTLl~~i~~~l~~   26 (178)
T d1ye8a1           3 IIITGEPGVGKTTLVKKIVERLGK   26 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHGG
T ss_pred             EEEECCCCcHHHHHHHHHHhcCCC
Confidence            789999999999999999998875

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=91.54  E-value=0.11  Score=37.06  Aligned_cols=32  Identities=22%  Similarity=0.205  Sum_probs=25.7

Q ss_pred             EEEEEecCcCCchhHHHHHHHHHhcccceEEEecc
Q psy4713           6 LILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLS   40 (103)
Q Consensus         6 lIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS   40 (103)
                      --|||.|.+|+||=+++..+.+.++   +.++.|+
T Consensus        43 ~giLl~GppGtGKT~la~aia~~~~---~~~~~i~   74 (247)
T d1ixza_          43 KGVLLVGPPGVGKTHLARAVAGEAR---VPFITAS   74 (247)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHHTT---CCEEEEE
T ss_pred             ceEEEecCCCCChhHHHHHHHHHcC---CCEEEEE
Confidence            3579999999999999999999875   4444443

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=91.38  E-value=0.13  Score=34.48  Aligned_cols=24  Identities=21%  Similarity=0.393  Sum_probs=22.3

Q ss_pred             EEEecCcCCchhHHHHHHHHHhcc
Q psy4713           8 LLFSGKRKSGKDFLTDYLLERIGS   31 (103)
Q Consensus         8 iL~sGKrksGKDy~a~~l~~~l~~   31 (103)
                      +||+|.+|+||=-+|.++++.++.
T Consensus        38 ~L~~GPpGtGKT~lA~~la~~~~~   61 (238)
T d1in4a2          38 VLLAGPPGLGKTTLAHIIASELQT   61 (238)
T ss_dssp             EEEESSTTSSHHHHHHHHHHHHTC
T ss_pred             EEEECCCCCcHHHHHHHHHhccCC
Confidence            689999999999999999999874

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=90.83  E-value=0.11  Score=39.30  Aligned_cols=41  Identities=32%  Similarity=0.421  Sum_probs=31.9

Q ss_pred             CeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchh-hHHHH
Q psy4713           4 PKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAP-IKSHW   47 (103)
Q Consensus         4 pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~p-iK~~y   47 (103)
                      ++-++||.|..|+||-++|..+++.++   ..+++++.| .+..|
T Consensus       153 ~~~~~~~~g~~~~gk~~~~~~~~~~~~---~~~i~in~s~~rs~~  194 (362)
T d1svma_         153 KKRYWLFKGPIDSGKTTLAAALLELCG---GKALNVNLPLDRLNF  194 (362)
T ss_dssp             TCCEEEEECSTTSSHHHHHHHHHHHHC---CEEECCSSCTTTHHH
T ss_pred             CcCeEEEECCCCCCHHHHHHHHHHHcC---CCEEEEECcchhhHH
Confidence            345889999999999999999999986   457777543 34444

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=90.73  E-value=0.081  Score=32.67  Aligned_cols=25  Identities=24%  Similarity=0.339  Sum_probs=22.5

Q ss_pred             EEEEecCcCCchhHHHHHHHHHhcc
Q psy4713           7 ILLFSGKRKSGKDFLTDYLLERIGS   31 (103)
Q Consensus         7 IiL~sGKrksGKDy~a~~l~~~l~~   31 (103)
                      .|+|+|-.||||-=++..|++.++.
T Consensus         9 ~I~i~G~~GsGKTTla~~La~~~~~   33 (192)
T d1lw7a2           9 TVAILGGESSGKSVLVNKLAAVFNT   33 (192)
T ss_dssp             EEEEECCTTSHHHHHHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCC
Confidence            3778999999999999999999863

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=90.23  E-value=0.18  Score=36.58  Aligned_cols=28  Identities=18%  Similarity=0.176  Sum_probs=23.8

Q ss_pred             CeEEEEEecCcCCchhHHHHHHHHHhcc
Q psy4713           4 PKLILLFSGKRKSGKDFLTDYLLERIGS   31 (103)
Q Consensus         4 pklIiL~sGKrksGKDy~a~~l~~~l~~   31 (103)
                      |+--+||.|.+|+||=++|..+++.++.
T Consensus        48 ~~~~iLl~GPpG~GKT~lAkalA~~~~~   75 (309)
T d1ofha_          48 TPKNILMIGPTGVGKTEIARRLAKLANA   75 (309)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred             CCceEEEECCCCCCHHHHHHHHhhcccc
Confidence            4456678899999999999999999863

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=90.16  E-value=0.2  Score=32.88  Aligned_cols=26  Identities=23%  Similarity=0.336  Sum_probs=22.8

Q ss_pred             EEEEEecCcCCchhHHHHHHHHHhcc
Q psy4713           6 LILLFSGKRKSGKDFLTDYLLERIGS   31 (103)
Q Consensus         6 lIiL~sGKrksGKDy~a~~l~~~l~~   31 (103)
                      -+|+|+|.+|+||=.++..+.+.++.
T Consensus        30 ~~i~i~G~~G~GKTsLl~~~~~~~~~   55 (283)
T d2fnaa2          30 PITLVLGLRRTGKSSIIKIGINELNL   55 (283)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHHTC
T ss_pred             CEEEEEcCCCCcHHHHHHHHHHHCCC
Confidence            36789999999999999999888865

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=89.79  E-value=0.19  Score=32.20  Aligned_cols=32  Identities=16%  Similarity=0.224  Sum_probs=27.0

Q ss_pred             EEEEecCcCCchhHHHHHHHHHhcc--cceEEEe
Q psy4713           7 ILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIR   38 (103)
Q Consensus         7 IiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~   38 (103)
                      ||-|+|.+||||==+.+.|...|..  .++.++.
T Consensus         3 ii~I~G~~gSGKTTli~~l~~~L~~~g~~v~vik   36 (165)
T d1xjca_           3 VWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVK   36 (165)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence            7889999999999999999999876  3555553

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.78  E-value=0.19  Score=33.66  Aligned_cols=26  Identities=15%  Similarity=0.221  Sum_probs=23.3

Q ss_pred             eEEEEEecCcCCchhHHHHHHHHHhc
Q psy4713           5 KLILLFSGKRKSGKDFLTDYLLERIG   30 (103)
Q Consensus         5 klIiL~sGKrksGKDy~a~~l~~~l~   30 (103)
                      .-.+||+|.+|+||=-++..+++.++
T Consensus        52 ~~~lll~GPpG~GKTt~a~~la~~~~   77 (253)
T d1sxja2          52 FRAAMLYGPPGIGKTTAAHLVAQELG   77 (253)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHHH
Confidence            34788999999999999999999986

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=89.56  E-value=0.11  Score=34.45  Aligned_cols=28  Identities=21%  Similarity=0.348  Sum_probs=24.0

Q ss_pred             CeEEEEEecCcCCchhHHHHHHHHHhcc
Q psy4713           4 PKLILLFSGKRKSGKDFLTDYLLERIGS   31 (103)
Q Consensus         4 pklIiL~sGKrksGKDy~a~~l~~~l~~   31 (103)
                      +-.+++|+|.+|+||=.++..+.+.|.+
T Consensus        45 ~~~~l~l~GppGtGKT~l~~~l~~~l~~   72 (287)
T d1w5sa2          45 VNMIYGSIGRVGIGKTTLAKFTVKRVSE   72 (287)
T ss_dssp             EEEEEECTTCCSSSHHHHHHHHHHHHHH
T ss_pred             cceEEEeECCCCCCHHHHHHHHHHHHHh
Confidence            3456889999999999999999998864

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=88.47  E-value=0.17  Score=33.83  Aligned_cols=24  Identities=29%  Similarity=0.300  Sum_probs=21.5

Q ss_pred             EEEecCcCCchhHHHHHHHHHhcc
Q psy4713           8 LLFSGKRKSGKDFLTDYLLERIGS   31 (103)
Q Consensus         8 iL~sGKrksGKDy~a~~l~~~l~~   31 (103)
                      +||+|.+|+||--++..+++.+..
T Consensus        48 lll~Gp~G~GKTtla~~iak~l~~   71 (231)
T d1iqpa2          48 LLFAGPPGVGKTTAALALARELFG   71 (231)
T ss_dssp             EEEESCTTSSHHHHHHHHHHHHHG
T ss_pred             EEEECCCCCcHHHHHHHHHHHHHh
Confidence            679999999999999999988753

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=88.37  E-value=0.53  Score=30.12  Aligned_cols=58  Identities=17%  Similarity=0.215  Sum_probs=38.4

Q ss_pred             CeEEEEEecCcCCchhHHHHHH-HHHhcc--cceEEEecchhhH--HHHHHHcCccHHHhcCC
Q psy4713           4 PKLILLFSGKRKSGKDFLTDYL-LERIGS--QHCAIIRLSAPIK--SHWAKQNGLEMDKLLGA   61 (103)
Q Consensus         4 pklIiL~sGKrksGKDy~a~~l-~~~l~~--~~~~iv~iS~piK--~~yA~~~glDl~~LL~d   61 (103)
                      |.-+++|.|.+||||--++-.+ .+.+..  ..+..++...|..  +.++...+.+.+.+...
T Consensus        25 ~G~~~~I~G~~G~GKT~la~~~~~~~~~~~~~~~~~~s~e~~~~~~~~~~~~~~~~~~~~~~~   87 (242)
T d1tf7a1          25 IGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFGWDLAKLVDE   87 (242)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHGGGTCCHHHHHHT
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCcccccccCCHHHHHHHHHHcCCChHHHHHh
Confidence            4457899999999999777544 333322  4666677655544  44666777777766644

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=88.11  E-value=0.2  Score=37.91  Aligned_cols=42  Identities=29%  Similarity=0.400  Sum_probs=35.3

Q ss_pred             CCCeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhh
Q psy4713           2 TQPKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPI   43 (103)
Q Consensus         2 ~~pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~pi   43 (103)
                      ..|+=+|||||..||||==....+.+.+....-.|+.|-+|+
T Consensus       155 ~~~~GliLvtGpTGSGKSTTl~~~l~~~~~~~~~i~tiEdPi  196 (401)
T d1p9ra_         155 KRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPI  196 (401)
T ss_dssp             TSSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSC
T ss_pred             hhhhceEEEEcCCCCCccHHHHHHhhhhcCCCceEEEeccCc
Confidence            456778999999999998888888887766556899999998

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=88.07  E-value=0.23  Score=34.29  Aligned_cols=33  Identities=18%  Similarity=0.188  Sum_probs=26.1

Q ss_pred             EEEecCcCCchhHHHHHHHHHhcccceEEEecc
Q psy4713           8 LLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLS   40 (103)
Q Consensus         8 iL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS   40 (103)
                      +++.|++||||=+++..+.+.+......++-++
T Consensus        39 l~l~G~~G~GKTHLl~A~~~~~~~~~~~~~~~~   71 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSS   71 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             EEEECCCCCcHHHHHHHHHHHhccCccceEEec
Confidence            679999999999999999999876444444443

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.90  E-value=0.27  Score=34.58  Aligned_cols=26  Identities=19%  Similarity=0.331  Sum_probs=22.5

Q ss_pred             eEEEEEecCcCCchhHHHHHHHHHhc
Q psy4713           5 KLILLFSGKRKSGKDFLTDYLLERIG   30 (103)
Q Consensus         5 klIiL~sGKrksGKDy~a~~l~~~l~   30 (103)
                      +-=||+.|.+|+||=+++..++..++
T Consensus        38 ~~giLL~GppGtGKT~l~~ala~~~~   63 (258)
T d1e32a2          38 PRGILLYGPPGTGKTLIARAVANETG   63 (258)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             CceeEEecCCCCCchHHHHHHHHHhC
Confidence            33478899999999999999999875

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=87.81  E-value=1.1  Score=31.53  Aligned_cols=63  Identities=17%  Similarity=0.319  Sum_probs=50.7

Q ss_pred             EEEEecCcCCchhHHHHHHHHHhcc-------cceEEEecchhhHHHHHHHcCccHHHhcCCCCcHHHhHHHHHHHHHHH
Q psy4713           7 ILLFSGKRKSGKDFLTDYLLERIGS-------QHCAIIRLSAPIKSHWAKQNGLEMDKLLGATKYKEKYRAEMITWSEAE   79 (103)
Q Consensus         7 IiL~sGKrksGKDy~a~~l~~~l~~-------~~~~iv~iS~piK~~yA~~~glDl~~LL~d~~YKE~~R~~mi~wge~~   79 (103)
                      =+++.|+.|+||==+++.|+.++..       ...+|+++              |+.+|+....|+.++-..|..-.++-
T Consensus        45 n~lLvG~pGVGKTalv~~LA~ri~~~~vp~~L~~~~i~~l--------------d~~~LiAg~~~rG~~E~rl~~il~e~  110 (195)
T d1jbka_          45 NPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLAL--------------DMGALVAGAKYRGEFEERLKGVLNDL  110 (195)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEE--------------CHHHHHTTTCSHHHHHHHHHHHHHHH
T ss_pred             CeEEEecCCcccHHHHHHHHHHHHhCCCCHHHcCceEEEe--------------eHHHHhccCCccHHHHHHHHHHHHHH
Confidence            3578899999999999999999865       24556665              78899999999999988888777776


Q ss_pred             hccC
Q psy4713          80 RRKD   83 (103)
Q Consensus        80 R~~D   83 (103)
                      ...+
T Consensus       111 ~~~~  114 (195)
T d1jbka_         111 AKQE  114 (195)
T ss_dssp             HHST
T ss_pred             hcCC
Confidence            5443

>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), Va isoform [TaxId: 9031]

Probab=86.86  E-value=0.2  Score=40.99  Aligned_cols=24  Identities=21%  Similarity=0.447  Sum_probs=20.9

Q ss_pred             EEEEecCcCCchhHHHHHHHHHhc
Q psy4713           7 ILLFSGKRKSGKDFLTDYLLERIG   30 (103)
Q Consensus         7 IiL~sGKrksGKDy~a~~l~~~l~   30 (103)
                      .|+|||++||||-..+..+..-|.
T Consensus        96 ~IiisGeSGsGKTe~~k~il~~l~  119 (730)
T d1w7ja2          96 SIIVSGESGAGKTVSAKYAMRYFA  119 (730)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHH
Confidence            467999999999999999888774

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=86.70  E-value=0.28  Score=31.95  Aligned_cols=37  Identities=19%  Similarity=0.328  Sum_probs=28.3

Q ss_pred             EEEEEecCcCCchhHHHHHHHHHhcccceEEEecchh
Q psy4713           6 LILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAP   42 (103)
Q Consensus         6 lIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~p   42 (103)
                      ++|.|.|=-||||-=+++.|.+.|.+....|+-+..|
T Consensus         1 mlI~ieG~dGsGKST~~~~L~~~l~~~g~~v~~~~~P   37 (208)
T d1gsia_           1 MLIAIEGVDGAGKRTLVEKLSGAFRAAGRSVATLAFP   37 (208)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEecC
Confidence            4789999999999999999999997633333334443

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=86.24  E-value=0.2  Score=32.52  Aligned_cols=28  Identities=18%  Similarity=0.209  Sum_probs=24.8

Q ss_pred             CeEEEEEecCcCCchhHHHHHHHHHhcc
Q psy4713           4 PKLILLFSGKRKSGKDFLTDYLLERIGS   31 (103)
Q Consensus         4 pklIiL~sGKrksGKDy~a~~l~~~l~~   31 (103)
                      .+++|.|.|--||||--+++.|++.+..
T Consensus         8 kp~~I~ieG~~GsGKTTl~~~L~~~l~~   35 (197)
T d2vp4a1           8 QPFTVLIEGNIGSGKTTYLNHFEKYKND   35 (197)
T ss_dssp             CCEEEEEECSTTSCHHHHHHTTGGGTTT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            4578889999999999999999999853

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.74  E-value=0.29  Score=32.73  Aligned_cols=24  Identities=21%  Similarity=0.252  Sum_probs=21.4

Q ss_pred             EEEecCcCCchhHHHHHHHHHhcc
Q psy4713           8 LLFSGKRKSGKDFLTDYLLERIGS   31 (103)
Q Consensus         8 iL~sGKrksGKDy~a~~l~~~l~~   31 (103)
                      +||+|..|+||--+|..+...++.
T Consensus        39 ~ll~Gp~G~GKTt~a~~la~~l~~   62 (224)
T d1sxjb2          39 MIISGMPGIGKTTSVHCLAHELLG   62 (224)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHHG
T ss_pred             EEEECCCCCCchhhHHHHHHHHhc
Confidence            578999999999999999988764

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=85.35  E-value=1.4  Score=28.72  Aligned_cols=58  Identities=22%  Similarity=0.173  Sum_probs=39.4

Q ss_pred             eEEEEEecCcCCchhHHHHHHHHHhcc--------cceEEEec----chhhHHHHHHHcCccHHHhcCCC
Q psy4713           5 KLILLFSGKRKSGKDFLTDYLLERIGS--------QHCAIIRL----SAPIKSHWAKQNGLEMDKLLGAT   62 (103)
Q Consensus         5 klIiL~sGKrksGKDy~a~~l~~~l~~--------~~~~iv~i----S~piK~~yA~~~glDl~~LL~d~   62 (103)
                      --+++|+|.+||||-.++-.+......        ..+..+..    ....-+......|.|.+......
T Consensus        36 G~~~li~G~pGsGKT~~~lq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (254)
T d1pzna2          36 QAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPDEVLKHI  105 (254)
T ss_dssp             SEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHHHHHHHTTTCCHHHHGGGE
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHHHhhchHHhcCCCceEEEEeccchhHHHHHHHHHHhcCCChHHhhhhh
Confidence            358999999999999998877665421        23444433    23345667777888888776544

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=85.25  E-value=0.6  Score=31.17  Aligned_cols=23  Identities=30%  Similarity=0.470  Sum_probs=21.2

Q ss_pred             EEEecCcCCchhHHHHHHHHHhc
Q psy4713           8 LLFSGKRKSGKDFLTDYLLERIG   30 (103)
Q Consensus         8 iL~sGKrksGKDy~a~~l~~~l~   30 (103)
                      +||+|.+|+||--+|..+.+.++
T Consensus        38 ~Ll~GPpG~GKTtla~~la~~~~   60 (239)
T d1ixsb2          38 LLLFGPPGLGKTTLAHVIAHELG   60 (239)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC
Confidence            57899999999999999999886

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.01  E-value=0.33  Score=33.15  Aligned_cols=37  Identities=19%  Similarity=0.299  Sum_probs=29.1

Q ss_pred             EEEEEecCcCCchhHHHHHHHHHhcccceEEEecchh
Q psy4713           6 LILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAP   42 (103)
Q Consensus         6 lIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~p   42 (103)
                      .+|.|.|--||||--.+..|.+.|.+....++.+..|
T Consensus         4 ~lI~ieG~dGsGKsT~~~~L~~~L~~~g~~v~~~~~p   40 (209)
T d1nn5a_           4 ALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLRFP   40 (209)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeCC
Confidence            4688999999999999999999997644444544444

>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=84.80  E-value=0.65  Score=30.37  Aligned_cols=34  Identities=26%  Similarity=0.352  Sum_probs=28.4

Q ss_pred             eEEEEEecCcCCchhHHHHHHHHHhcc--cceEEEe
Q psy4713           5 KLILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIR   38 (103)
Q Consensus         5 klIiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~   38 (103)
                      |+|.+.|||-|+||-.+|-.|+..|.+  .++.+|-
T Consensus         2 kvIav~s~KGGvGKTtia~nlA~~la~~g~~VlliD   37 (232)
T d1hyqa_           2 RTITVASGKGGTGKTTITANLGVALAQLGHDVTIVD   37 (232)
T ss_dssp             EEEEEEESSSCSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             EEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEe
Confidence            789999999999999999998888876  4555654

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=84.44  E-value=0.48  Score=32.86  Aligned_cols=22  Identities=27%  Similarity=0.302  Sum_probs=19.3

Q ss_pred             EEEEecCcCCchhHHHHHHHHH
Q psy4713           7 ILLFSGKRKSGKDFLTDYLLER   28 (103)
Q Consensus         7 IiL~sGKrksGKDy~a~~l~~~   28 (103)
                      -|||+|++|+||-=+|..|.++
T Consensus        16 gvl~~G~sG~GKStlal~l~~~   37 (176)
T d1kkma_          16 GVLITGDSGVGKSETALELVQR   37 (176)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHT
T ss_pred             EEEEEeCCCCCHHHHHHHHHHc
Confidence            4899999999998888888877

>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

Probab=83.71  E-value=0.34  Score=40.16  Aligned_cols=24  Identities=21%  Similarity=0.261  Sum_probs=20.9

Q ss_pred             EEEEecCcCCchhHHHHHHHHHhc
Q psy4713           7 ILLFSGKRKSGKDFLTDYLLERIG   30 (103)
Q Consensus         7 IiL~sGKrksGKDy~a~~l~~~l~   30 (103)
                      .|+|||++||||-..|..+..-|.
T Consensus       123 ~IiisGESGaGKTe~~K~il~yL~  146 (789)
T d1kk8a2         123 SCLITGESGAGKTENTKKVIMYLA  146 (789)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHH
Confidence            578899999999999888888775

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=83.61  E-value=0.45  Score=31.33  Aligned_cols=23  Identities=26%  Similarity=0.283  Sum_probs=20.3

Q ss_pred             EEEecCcCCchhHHHHHHHHHhc
Q psy4713           8 LLFSGKRKSGKDFLTDYLLERIG   30 (103)
Q Consensus         8 iL~sGKrksGKDy~a~~l~~~l~   30 (103)
                      +||+|.+|+||=-++..+.+.+.
T Consensus        36 lll~Gp~G~GKTtl~~~i~~~l~   58 (237)
T d1sxjd2          36 MLFYGPPGTGKTSTILALTKELY   58 (237)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHH
T ss_pred             EEEECCCCCChHHHHHHHHHHHc
Confidence            68999999999999999888763

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=83.48  E-value=0.81  Score=31.04  Aligned_cols=37  Identities=14%  Similarity=0.233  Sum_probs=28.0

Q ss_pred             CCeEEEEEecCcCCchhHHHHHHHHHhcc--cceEEEec
Q psy4713           3 QPKLILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIRL   39 (103)
Q Consensus         3 ~pklIiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~i   39 (103)
                      +-+-||++|||=|+||==+|-.|+..|.+  .++-+|-.
T Consensus        18 ~~~~iii~sGKGGVGKTT~a~nLA~~lA~~G~rVllvD~   56 (279)
T d1ihua2          18 NEHGLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTS   56 (279)
T ss_dssp             TSCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeC
Confidence            34678899999999999998888888865  34444433

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=83.35  E-value=2.5  Score=25.66  Aligned_cols=47  Identities=13%  Similarity=0.077  Sum_probs=35.7

Q ss_pred             CCCeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHH
Q psy4713           2 TQPKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAK   49 (103)
Q Consensus         2 ~~pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~   49 (103)
                      .+..-+.++++..||||=+++-.+....+ .++.|+-=+..+.+++++
T Consensus         5 ~~~~~~~ll~apTGsGKT~~~~~~~~~~~-~~vli~~P~~~l~~q~~~   51 (136)
T d1a1va1           5 PQSFQVAHLHAPTGSGKSTKVPAAYAAQG-YKVLVLNPSVAATLGFGA   51 (136)
T ss_dssp             CSSCEEEEEECCTTSCTTTHHHHHHHTTT-CCEEEEESCHHHHHHHHH
T ss_pred             ccCCCEEEEEeCCCCCHHHHHHHHHHHcC-CcEEEEcChHHHHHHHHH
Confidence            34556788999999999998866555544 567777777788888887

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=82.75  E-value=0.61  Score=31.99  Aligned_cols=22  Identities=27%  Similarity=0.297  Sum_probs=19.6

Q ss_pred             EEEEecCcCCchhHHHHHHHHH
Q psy4713           7 ILLFSGKRKSGKDFLTDYLLER   28 (103)
Q Consensus         7 IiL~sGKrksGKDy~a~~l~~~   28 (103)
                      =|||+|++|+||-=+|-.|.++
T Consensus        17 gvli~G~sg~GKS~la~~l~~~   38 (169)
T d1ko7a2          17 GVLITGDSGIGKSETALELIKR   38 (169)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHT
T ss_pred             EEEEEeCCCCCHHHHHHHHHHc
Confidence            4899999999998888888877

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=82.72  E-value=0.48  Score=31.35  Aligned_cols=24  Identities=33%  Similarity=0.315  Sum_probs=21.3

Q ss_pred             EEEecCcCCchhHHHHHHHHHhcc
Q psy4713           8 LLFSGKRKSGKDFLTDYLLERIGS   31 (103)
Q Consensus         8 iL~sGKrksGKDy~a~~l~~~l~~   31 (103)
                      +||+|..|+||--++..+.+.+..
T Consensus        38 lLl~Gp~G~GKttl~~~la~~l~~   61 (227)
T d1sxjc2          38 LLFYGPPGTGKTSTIVALAREIYG   61 (227)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHHHT
T ss_pred             EEEECCCCCChhHHHHHHHHHhhc
Confidence            678999999999999999988764

>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=82.64  E-value=0.4  Score=39.38  Aligned_cols=25  Identities=28%  Similarity=0.403  Sum_probs=21.4

Q ss_pred             EEEEecCcCCchhHHHHHHHHHhcc
Q psy4713           7 ILLFSGKRKSGKDFLTDYLLERIGS   31 (103)
Q Consensus         7 IiL~sGKrksGKDy~a~~l~~~l~~   31 (103)
                      .|+|||++||||-..+..+..-|..
T Consensus       127 sIiisGeSGaGKTe~~k~il~yL~~  151 (712)
T d1d0xa2         127 SLLITGESGAGKTENTKKVIQYLAS  151 (712)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             eEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            6889999999999999888777643

>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=82.30  E-value=0.43  Score=38.97  Aligned_cols=25  Identities=20%  Similarity=0.320  Sum_probs=21.8

Q ss_pred             EEEEecCcCCchhHHHHHHHHHhcc
Q psy4713           7 ILLFSGKRKSGKDFLTDYLLERIGS   31 (103)
Q Consensus         7 IiL~sGKrksGKDy~a~~l~~~l~~   31 (103)
                      .|+|||++||||-..+..+..-|..
T Consensus        93 ~IiisGeSGaGKTe~~k~il~yL~~  117 (710)
T d1br2a2          93 SILCTGESGAGKTENTKKVIQYLAV  117 (710)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHHH
Confidence            4889999999999999998888753

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=82.29  E-value=0.48  Score=32.33  Aligned_cols=25  Identities=32%  Similarity=0.509  Sum_probs=22.1

Q ss_pred             EEEEecCcCCchhHHHHHHHHHhcc
Q psy4713           7 ILLFSGKRKSGKDFLTDYLLERIGS   31 (103)
Q Consensus         7 IiL~sGKrksGKDy~a~~l~~~l~~   31 (103)
                      .+||+|++|+||--+|..+...+..
T Consensus        36 ~~Ll~Gp~G~GKtt~a~~~~~~l~~   60 (239)
T d1njfa_          36 AYLFSGTRGVGKTSIARLLAKGLNC   60 (239)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHC
T ss_pred             eEEEECCCCCcHHHHHHHHHHHhcC
Confidence            4689999999999999999888864

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=81.46  E-value=0.97  Score=32.88  Aligned_cols=64  Identities=25%  Similarity=0.393  Sum_probs=47.1

Q ss_pred             EEEEecCcCCchhHHHHHHHHHhccc-------ceEEEecchhhHHHHHHHcCccHHHhcCCCCcHHHhHHHHHHHHHHH
Q psy4713           7 ILLFSGKRKSGKDFLTDYLLERIGSQ-------HCAIIRLSAPIKSHWAKQNGLEMDKLLGATKYKEKYRAEMITWSEAE   79 (103)
Q Consensus         7 IiL~sGKrksGKDy~a~~l~~~l~~~-------~~~iv~iS~piK~~yA~~~glDl~~LL~d~~YKE~~R~~mi~wge~~   79 (103)
                      =+|+.|+.|+||-=+++.++.++...       ..+|+++              |+.+|+.-..|+.++-..+..-.++-
T Consensus        41 n~lLVG~~GvGKTalv~~la~ri~~~~vp~~l~~~~i~~l--------------~~~~liag~~~~g~~e~r~~~i~~~~  106 (268)
T d1r6bx2          41 NPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL--------------DIGSLLAGTKYRGDFEKRFKALLKQL  106 (268)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEEC--------------CCC---CCCCCSSCHHHHHHHHHHHH
T ss_pred             CcEEECCCCCcHHHHHHHHHHHHHhCCcccccccceeEEe--------------eechHhccCccchhHHHHHHHHHHHh
Confidence            35688999999999999999998652       3455554              77799999999998888887777776


Q ss_pred             hccCh
Q psy4713          80 RRKDN   84 (103)
Q Consensus        80 R~~D~   84 (103)
                      +..+.
T Consensus       107 ~~~~~  111 (268)
T d1r6bx2         107 EQDTN  111 (268)
T ss_dssp             SSSSC
T ss_pred             hccCC
Confidence            55543

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=81.39  E-value=1.8  Score=27.62  Aligned_cols=56  Identities=23%  Similarity=0.228  Sum_probs=37.1

Q ss_pred             EEEEEecCcCCchhHHHHHHHHHhc--------ccceEEEec----chhhHHHHHHHcCccHHHhcCC
Q psy4713           6 LILLFSGKRKSGKDFLTDYLLERIG--------SQHCAIIRL----SAPIKSHWAKQNGLEMDKLLGA   61 (103)
Q Consensus         6 lIiL~sGKrksGKDy~a~~l~~~l~--------~~~~~iv~i----S~piK~~yA~~~glDl~~LL~d   61 (103)
                      -+++|+|.+||||=.++-.+.....        ...+..+..    +...........|+|.++.+..
T Consensus        35 ~~~li~G~pGsGKT~l~lq~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (251)
T d1szpa2          35 SITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNN  102 (251)
T ss_dssp             SEEEEEESTTSSHHHHHHHHTTTTTSCTTTTCCSCEEEEEESSSCCCGGGGHHHHHHTCCCHHHHGGG
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhhhhhhhccCCceEEEEeecchHHHHHHHHHHHhcCCchhhhhcc
Confidence            4899999999999998877754321        123333322    3334566667889998876543

>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=81.08  E-value=0.46  Score=39.41  Aligned_cols=24  Identities=21%  Similarity=0.407  Sum_probs=19.1

Q ss_pred             EEEEecCcCCchhHHHHHHHHHhc
Q psy4713           7 ILLFSGKRKSGKDFLTDYLLERIG   30 (103)
Q Consensus         7 IiL~sGKrksGKDy~a~~l~~~l~   30 (103)
                      .|+|||++||||--.+..+..-|.
T Consensus       125 sIiisGeSGaGKTe~~K~il~yL~  148 (794)
T d2mysa2         125 SILITGESGAGKTVNTKRVIQYFA  148 (794)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHH
Confidence            478999999999977776666653

>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]

Probab=81.08  E-value=0.5  Score=38.43  Aligned_cols=24  Identities=17%  Similarity=0.344  Sum_probs=20.7

Q ss_pred             EEEEecCcCCchhHHHHHHHHHhc
Q psy4713           7 ILLFSGKRKSGKDFLTDYLLERIG   30 (103)
Q Consensus         7 IiL~sGKrksGKDy~a~~l~~~l~   30 (103)
                      .|+|||++||||--.+..+.+-|.
T Consensus        88 sIiisGeSGsGKTe~~k~il~yL~  111 (684)
T d1lkxa_          88 CVIISGESGAGKTEASKKIMQFLT  111 (684)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHH
Confidence            488999999999999988877664

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=80.62  E-value=2  Score=29.77  Aligned_cols=53  Identities=13%  Similarity=0.108  Sum_probs=35.5

Q ss_pred             CeEEEEEecCcCCchhHHHHHHHHHhcc--cceEEEecc----hhh--HHHHHHHcCccHH
Q psy4713           4 PKLILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIRLS----API--KSHWAKQNGLEMD   56 (103)
Q Consensus         4 pklIiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~iS----~pi--K~~yA~~~glDl~   56 (103)
                      .+-||+|.|..|+||=-.+-.|+.++..  .++.++..-    ++.  =+.||+..|+++.
T Consensus         9 ~~~vi~lvGp~GvGKTTTiaKLA~~~~~~g~kV~lit~Dt~R~gA~eQL~~~a~~l~v~~~   69 (207)
T d1ls1a2           9 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVL   69 (207)
T ss_dssp             SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEE
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEecccccchHHHHHHHHHHhcCCccc
Confidence            4557788999999999999888888865  344454441    111  2357777776544

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=80.08  E-value=0.68  Score=31.33  Aligned_cols=24  Identities=25%  Similarity=0.144  Sum_probs=21.7

Q ss_pred             EEEEecCcCCchhHHHHHHHHHhc
Q psy4713           7 ILLFSGKRKSGKDFLTDYLLERIG   30 (103)
Q Consensus         7 IiL~sGKrksGKDy~a~~l~~~l~   30 (103)
                      .+||+|.+|+||--+|..+++.+-
T Consensus        26 ~lLl~Gp~G~GKtt~a~~~a~~l~   49 (207)
T d1a5ta2          26 ALLIQALPGMGDDALIYALSRYLL   49 (207)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCcHHHHHHHHHHhcc
Confidence            478999999999999999998874