Psyllid ID: psy471

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-
Protein Sequence
MSKLLTIVSLEDVKLRQNQPCQATDNNIGYLARSFEGPEWDYGHVRLRKSFSPRCCHHSPRLFQLLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVKLPKMLEPLLVLTLRKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE
Secondary Structure (PSIPRED)
cccEEEEEEEccHHHHcccccccccccEEEEEEcccccccEEEEEccccEEcccccccccccHHHHHHHHHHHHHHHccccccEEEEccccccHHHHHHHHcccHHcccEEEEEccHHHHHHHHHHcccccccccEEEEEEccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHcccHHHccccccccccccHHHHHHHHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
ccccccEEEHHHHHccccHHHHHHcccccEEEEcccccEEEEEEcccEEEEccccccccHHHHHHHHHHHHHHHHHHcccccEEEEEEcccccHHHHHHHHHHHHHcccEEEEEEEHHHHHHHHcccccccccEEEEEEEEcccccEEEEEEEEccccccEEEEEEEccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MSKLLTivsledvklrqnqpcqatdnnigylarsfegpewdyghvrlrksfsprcchhsprLFQLLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLdknlkgernvklpkmlEPLLVLTLRKKKKKKKKKKKEEEEeeeeeeeggeeeeeggggeeegggeeeeeeeeeeeeeeeeeeee
Flexible Loop (DISEMBL)
MSKLLTIVSledvklrqnqpcqatdnniGYLARSFEGPEWDYGHVRLRKsfsprcchHSPRLFQLLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDknlkgernvklpkmlepllvltlrkkkkkkkkkkkeeeeeeeeeeeggeeeeeggggeeegggeeeeeeeeeeeeeeeeeeee
Low Complexity Region (SEG)
MSKLLTIVSLEDVKLRQNQPCQATDNNIGYLARSFEGPEWDYGHVRLRKSFSPRCCHHSPRLFQLLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVKLPKMLEPLLVLTLRkkkkkkkkkkkeeeeeeeeeeeggeeeeeggggeeegggeeeeeeeeeeeeeeeeeeee
Disordered region (IsUnstruct)
****LTIVSLEDVKLRQNQPCQATDNNIGYLARSFEGPEWDYGHVRLRKSFSPRCCHHSPRLFQLLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVKLPKMLEPLLVL**************************************************************
Disordered Region (DISOPRED)
**KLLTIVSLEDVKLRQNQPCQATDNNIGYLARSFEGPEWDYGHVRLRKSFSPRCCHHSPRLFQLLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVKLPKMLEPLLVLTL************************************************************
Disordered Region (DISEMBL)
MSKLLTIVSLEDVKLRQNQPCQATDNNIGYLARSFEGPEWDYGHVRLRKSFSPRCCHHSPRLFQLLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVKLPKMLEPLLVLTLR***********************************************************
Disordered Region (DISPRO)
**KLLTIVSLEDVKLRQNQPCQATDNNIGYLARSFEGPEWDYGHVRLRKSFSPRCCHHSPRLFQLLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVKLPKMLEPLLVLTLRKKKKKKKKKKKEEEEEE******************************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSKLLTIVSLEDVKLRQNQPCQATDNNIGYLARSFEGPEWDYGHVRLRKSFSPRCCHHSPRLFQLLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVKLPKMLEPxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGGGGEEExxxxxxxxxxxxxxxxxxxxxxx
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	211	2.2.26 [Sep-21-2011]
P41827	640	Heat shock protein 70 B2	N/A	N/A	0.412	0.135	0.771	2e-34
P41826	640	Heat shock protein 70 A2	N/A	N/A	0.412	0.135	0.771	2e-34
P41825	640	Heat shock protein 70 A1	N/A	N/A	0.412	0.135	0.771	2e-34
O97125	635	Heat shock protein 68 OS=	yes	N/A	0.407	0.135	0.758	3e-33
Q9BIR7	641	Major heat shock 70 kDa p	no	N/A	0.355	0.117	0.866	1e-32
Q9BIS2	641	Major heat shock 70 kDa p	no	N/A	0.355	0.117	0.866	1e-32
Q8INI8	641	Major heat shock 70 kDa p	no	N/A	0.355	0.117	0.866	1e-32
P02825	642	Major heat shock 70 kDa p	no	N/A	0.355	0.116	0.866	2e-32
P82910	642	Major heat shock 70 kDa p	no	N/A	0.355	0.116	0.866	2e-32
Q9GSU7	644	Major heat shock 70 kDa p	N/A	N/A	0.355	0.116	0.853	5e-32

>sp|P41827|HSP74_ANOAL Heat shock protein 70 B2 OS=Anopheles albimanus GN=HSP70B2 PE=3 SV=1

 Score =  145 bits (367), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 71/92 (77%), Positives = 79/92 (85%), Gaps = 5/92 (5%)

Query: 48  RKSFSPRCCHHSPRLFQLLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIA 107
           RK+F+P           +LTKMKETAEAYLG SV++AVITVPAYFND+QRQATKDAGAIA
Sbjct: 109 RKTFAPEEISS-----MVLTKMKETAEAYLGQSVKNAVITVPAYFNDSQRQATKDAGAIA 163

Query: 108 GLNVMRIVNEPTAAALAYGLDKNLKGERNVKL 139
           GLNVMRI+NEPTAAALAYGLDKNLKGERNV +
Sbjct: 164 GLNVMRIINEPTAAALAYGLDKNLKGERNVLI 195

Anopheles albimanus (taxid: 7167)

>sp|P41826|HSP72_ANOAL Heat shock protein 70 A2 OS=Anopheles albimanus GN=HSP70A2 PE=3 SV=1

 Score =  145 bits (366), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 71/92 (77%), Positives = 79/92 (85%), Gaps = 5/92 (5%)

Query: 48  RKSFSPRCCHHSPRLFQLLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIA 107
           RK+F+P           +LTKMKETAEAYLG SV++AVITVPAYFND+QRQATKDAGAIA
Sbjct: 109 RKTFAPEEISS-----MVLTKMKETAEAYLGQSVKNAVITVPAYFNDSQRQATKDAGAIA 163

Query: 108 GLNVMRIVNEPTAAALAYGLDKNLKGERNVKL 139
           GLNVMRI+NEPTAAALAYGLDKNLKGERNV +
Sbjct: 164 GLNVMRIINEPTAAALAYGLDKNLKGERNVLI 195

Anopheles albimanus (taxid: 7167)

>sp|P41825|HSP71_ANOAL Heat shock protein 70 A1 OS=Anopheles albimanus GN=HSP70A1 PE=3 SV=1

 Score =  145 bits (366), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 71/92 (77%), Positives = 79/92 (85%), Gaps = 5/92 (5%)

Query: 48  RKSFSPRCCHHSPRLFQLLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIA 107
           RK+F+P           +LTKMKETAEAYLG SV++AVITVPAYFND+QRQATKDAGAIA
Sbjct: 109 RKTFAPEEISS-----MVLTKMKETAEAYLGQSVKNAVITVPAYFNDSQRQATKDAGAIA 163

Query: 108 GLNVMRIVNEPTAAALAYGLDKNLKGERNVKL 139
           GLNVMRI+NEPTAAALAYGLDKNLKGERNV +
Sbjct: 164 GLNVMRIINEPTAAALAYGLDKNLKGERNVLI 195

Anopheles albimanus (taxid: 7167)

>sp|O97125|HSP68_DROME Heat shock protein 68 OS=Drosophila melanogaster GN=Hsp68 PE=1 SV=1

 Score =  141 bits (356), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 69/91 (75%), Positives = 77/91 (84%), Gaps = 5/91 (5%)

Query: 49  KSFSPRCCHHSPRLFQLLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAG 108
           K FSP           +LTKMKETAEAYLG +V+DAVITVPAYFND+QRQATKDAGAIAG
Sbjct: 109 KCFSPEEISS-----MVLTKMKETAEAYLGTTVKDAVITVPAYFNDSQRQATKDAGAIAG 163

Query: 109 LNVMRIVNEPTAAALAYGLDKNLKGERNVKL 139
           +NV+RI+NEPTAAALAYGLDKNLKGERNV +
Sbjct: 164 INVLRIINEPTAAALAYGLDKNLKGERNVLI 194

Drosophila melanogaster (taxid: 7227)

>sp|Q9BIR7|HSP75_DROME Major heat shock 70 kDa protein Bc OS=Drosophila melanogaster GN=Hsp70Bc PE=2 SV=2

 Score =  139 bits (350), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 65/75 (86%), Positives = 71/75 (94%)

Query: 65  LLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALA 124
           +LTKMKETAEAYLG S+ DAVITVPAYFND+QRQATKDAG IAGLNV+RI+NEPTAAALA
Sbjct: 120 VLTKMKETAEAYLGESITDAVITVPAYFNDSQRQATKDAGHIAGLNVLRIINEPTAAALA 179

Query: 125 YGLDKNLKGERNVKL 139
           YGLDKNLKGERNV +
Sbjct: 180 YGLDKNLKGERNVLI 194

Drosophila melanogaster (taxid: 7227)

>sp|Q9BIS2|HSP73_DROME Major heat shock 70 kDa protein Bb OS=Drosophila melanogaster GN=Hsp70Bb PE=2 SV=2

 Score =  139 bits (350), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 65/75 (86%), Positives = 71/75 (94%)

Query: 65  LLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALA 124
           +LTKMKETAEAYLG S+ DAVITVPAYFND+QRQATKDAG IAGLNV+RI+NEPTAAALA
Sbjct: 120 VLTKMKETAEAYLGESITDAVITVPAYFNDSQRQATKDAGHIAGLNVLRIINEPTAAALA 179

Query: 125 YGLDKNLKGERNVKL 139
           YGLDKNLKGERNV +
Sbjct: 180 YGLDKNLKGERNVLI 194

Drosophila melanogaster (taxid: 7227)

>sp|Q8INI8|HSP72_DROME Major heat shock 70 kDa protein Ba OS=Drosophila melanogaster GN=Hsp70Ba PE=2 SV=2

 Score =  139 bits (350), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 65/75 (86%), Positives = 71/75 (94%)

Query: 65  LLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALA 124
           +LTKMKETAEAYLG S+ DAVITVPAYFND+QRQATKDAG IAGLNV+RI+NEPTAAALA
Sbjct: 120 VLTKMKETAEAYLGESITDAVITVPAYFNDSQRQATKDAGHIAGLNVLRIINEPTAAALA 179

Query: 125 YGLDKNLKGERNVKL 139
           YGLDKNLKGERNV +
Sbjct: 180 YGLDKNLKGERNVLI 194

Drosophila melanogaster (taxid: 7227)

>sp|P02825|HSP71_DROME Major heat shock 70 kDa protein Ab OS=Drosophila melanogaster GN=Hsp70Ab PE=2 SV=3

 Score =  139 bits (349), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 65/75 (86%), Positives = 71/75 (94%)

Query: 65  LLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALA 124
           +LTKMKETAEAYLG S+ DAVITVPAYFND+QRQATKDAG IAGLNV+RI+NEPTAAALA
Sbjct: 120 VLTKMKETAEAYLGESITDAVITVPAYFNDSQRQATKDAGHIAGLNVLRIINEPTAAALA 179

Query: 125 YGLDKNLKGERNVKL 139
           YGLDKNLKGERNV +
Sbjct: 180 YGLDKNLKGERNVLI 194

Drosophila melanogaster (taxid: 7227)

>sp|P82910|HSP70_DROME Major heat shock 70 kDa protein Aa OS=Drosophila melanogaster GN=Hsp70Aa PE=2 SV=2

 Score =  139 bits (349), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 65/75 (86%), Positives = 71/75 (94%)

Query: 65  LLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALA 124
           +LTKMKETAEAYLG S+ DAVITVPAYFND+QRQATKDAG IAGLNV+RI+NEPTAAALA
Sbjct: 120 VLTKMKETAEAYLGESITDAVITVPAYFNDSQRQATKDAGHIAGLNVLRIINEPTAAALA 179

Query: 125 YGLDKNLKGERNVKL 139
           YGLDKNLKGERNV +
Sbjct: 180 YGLDKNLKGERNVLI 194

Drosophila melanogaster (taxid: 7227)

>sp|Q9GSU7|HSP71_DROSI Major heat shock 70 kDa protein Ab OS=Drosophila simulans GN=Hsp70Ab PE=2 SV=2

 Score =  137 bits (345), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 64/75 (85%), Positives = 70/75 (93%)

Query: 65  LLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALA 124
           +L KMKETAEAYLG S+ DAVITVPAYFND+QRQATKDAG IAGLNV+RI+NEPTAAALA
Sbjct: 120 VLVKMKETAEAYLGESITDAVITVPAYFNDSQRQATKDAGHIAGLNVLRIINEPTAAALA 179

Query: 125 YGLDKNLKGERNVKL 139
           YGLDKNLKGERNV +
Sbjct: 180 YGLDKNLKGERNVLI 194

Drosophila simulans (taxid: 7240)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	211
11993663	554	inducible heat shock 70 kDa protein, par	0.412	0.157	0.782	1e-33
347972202	420	AGAP004583-PA [Anopheles gambiae str. PE	0.412	0.207	0.782	1e-33
289741399	639	heat shock protein 70 [Glossina morsitan	0.355	0.117	0.88	8e-33
159592	502	heat shock protein 70, hsp70A2, partial	0.412	0.173	0.771	9e-33
1170377	640	RecName: Full=Heat shock protein 70 B2 g	0.412	0.135	0.771	9e-33
113208385	638	heat shock protein 70 [Mamestra brassica	0.355	0.117	0.906	9e-33
312379539	640	hypothetical protein AND_08586 [Anophele	0.412	0.135	0.771	1e-32
171879766	254	heat shock protein 70, partial [Plodia i	0.360	0.299	0.894	1e-32
312376960	631	hypothetical protein AND_11878 [Anophele	0.412	0.137	0.771	1e-32
312375481	640	hypothetical protein AND_14112 [Anophele	0.412	0.135	0.771	1e-32

>gi|11993663|gb|AAG42838.1|AF322911_1 inducible heat shock 70 kDa protein, partial [Leptinotarsa decemlineata]

 Score =  148 bits (374), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 72/92 (78%), Positives = 79/92 (85%), Gaps = 5/92 (5%)

Query: 48  RKSFSPRCCHHSPRLFQLLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIA 107
           RK+FSP           +LTKMKETAEAYLG S+RDAVITVPAYFND+QRQATKDAGAIA
Sbjct: 13  RKTFSPEEISS-----MVLTKMKETAEAYLGSSIRDAVITVPAYFNDSQRQATKDAGAIA 67

Query: 108 GLNVMRIVNEPTAAALAYGLDKNLKGERNVKL 139
           GLNV+RI+NEPTAAALAYGLDKNLKGERNV +
Sbjct: 68  GLNVLRIINEPTAAALAYGLDKNLKGERNVLI 99

Source: Leptinotarsa decemlineata

Species: Leptinotarsa decemlineata

Genus: Leptinotarsa

Family: Chrysomelidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|347972202|ref|XP_001688624.2| AGAP004583-PA [Anopheles gambiae str. PEST] gi|333469360|gb|EDO63976.2| AGAP004583-PA [Anopheles gambiae str. PEST]

 Score =  148 bits (374), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 72/92 (78%), Positives = 80/92 (86%), Gaps = 5/92 (5%)

Query: 48  RKSFSPRCCHHSPRLFQLLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIA 107
           RK+F+P           +LTKMKETAEAYLGHSV++AVITVPAYFND+QRQATKDAGAIA
Sbjct: 109 RKTFAPEEVSS-----MVLTKMKETAEAYLGHSVKNAVITVPAYFNDSQRQATKDAGAIA 163

Query: 108 GLNVMRIVNEPTAAALAYGLDKNLKGERNVKL 139
           GLNVMRI+NEPTAAALAYGLDKNLKGERNV +
Sbjct: 164 GLNVMRIINEPTAAALAYGLDKNLKGERNVLI 195

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|289741399|gb|ADD19447.1| heat shock protein 70 [Glossina morsitans morsitans]

 Score =  145 bits (367), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 66/75 (88%), Positives = 74/75 (98%)

Query: 65  LLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALA 124
           +LTKMKETAEAYLGH+V+DAV+TVPAYFND+QRQATKDAGAIAGLNV+RI+NEPTAAALA
Sbjct: 120 VLTKMKETAEAYLGHTVKDAVVTVPAYFNDSQRQATKDAGAIAGLNVLRIINEPTAAALA 179

Query: 125 YGLDKNLKGERNVKL 139
           YGLDKNLKGERNV +
Sbjct: 180 YGLDKNLKGERNVLI 194

Source: Glossina morsitans morsitans

Species: Glossina morsitans

Genus: Glossina

Family: Glossinidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|159592|gb|AAC41542.1| heat shock protein 70, hsp70A2, partial [Anopheles albimanus]

 Score =  145 bits (367), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 71/92 (77%), Positives = 79/92 (85%), Gaps = 5/92 (5%)

Query: 48  RKSFSPRCCHHSPRLFQLLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIA 107
           RK+F+P           +LTKMKETAEAYLG SV++AVITVPAYFND+QRQATKDAGAIA
Sbjct: 109 RKTFAPEEISS-----MVLTKMKETAEAYLGQSVKNAVITVPAYFNDSQRQATKDAGAIA 163

Query: 108 GLNVMRIVNEPTAAALAYGLDKNLKGERNVKL 139
           GLNVMRI+NEPTAAALAYGLDKNLKGERNV +
Sbjct: 164 GLNVMRIINEPTAAALAYGLDKNLKGERNVLI 195

Source: Anopheles albimanus

Species: Anopheles albimanus

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|1170377|sp|P41827.1|HSP74_ANOAL RecName: Full=Heat shock protein 70 B2 gi|159593|gb|AAC41543.1| heat shock protein 70, hsp70A2 [Anopheles albimanus]

 Score =  145 bits (367), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 71/92 (77%), Positives = 79/92 (85%), Gaps = 5/92 (5%)

Query: 48  RKSFSPRCCHHSPRLFQLLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIA 107
           RK+F+P           +LTKMKETAEAYLG SV++AVITVPAYFND+QRQATKDAGAIA
Sbjct: 109 RKTFAPEEISS-----MVLTKMKETAEAYLGQSVKNAVITVPAYFNDSQRQATKDAGAIA 163

Query: 108 GLNVMRIVNEPTAAALAYGLDKNLKGERNVKL 139
           GLNVMRI+NEPTAAALAYGLDKNLKGERNV +
Sbjct: 164 GLNVMRIINEPTAAALAYGLDKNLKGERNVLI 195

Source: Anopheles albimanus

Species: Anopheles albimanus

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|113208385|dbj|BAF03555.1| heat shock protein 70 [Mamestra brassicae]

 Score =  145 bits (366), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 68/75 (90%), Positives = 73/75 (97%)

Query: 65  LLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALA 124
           +LTKMKETAEAYLG SVRDAVITVPAYFND+QRQATKDAGAIAGLNV+RI+NEPTAAALA
Sbjct: 120 VLTKMKETAEAYLGSSVRDAVITVPAYFNDSQRQATKDAGAIAGLNVLRIINEPTAAALA 179

Query: 125 YGLDKNLKGERNVKL 139
           YGLDKNLKGERNV +
Sbjct: 180 YGLDKNLKGERNVLI 194

Source: Mamestra brassicae

Species: Mamestra brassicae

Genus: Mamestra

Family: Noctuidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312379539|gb|EFR25780.1| hypothetical protein AND_08586 [Anopheles darlingi]

 Score =  145 bits (366), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 71/92 (77%), Positives = 79/92 (85%), Gaps = 5/92 (5%)

Query: 48  RKSFSPRCCHHSPRLFQLLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIA 107
           RK+F+P           +LTKMKETAEAYLG SV++AVITVPAYFND+QRQATKDAGAIA
Sbjct: 109 RKTFAPEEISS-----MVLTKMKETAEAYLGQSVKNAVITVPAYFNDSQRQATKDAGAIA 163

Query: 108 GLNVMRIVNEPTAAALAYGLDKNLKGERNVKL 139
           GLNVMRI+NEPTAAALAYGLDKNLKGERNV +
Sbjct: 164 GLNVMRIINEPTAAALAYGLDKNLKGERNVLI 195

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|171879766|gb|ACB55606.1| heat shock protein 70, partial [Plodia interpunctella]

 Score =  145 bits (366), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 68/76 (89%), Positives = 73/76 (96%)

Query: 64  QLLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAAL 123
            +LTKMKETAEAYLG SVRDAVITVPAYFND+QRQATKDAGAIAGLNV+RI+NEPTAAAL
Sbjct: 82  MVLTKMKETAEAYLGTSVRDAVITVPAYFNDSQRQATKDAGAIAGLNVLRIINEPTAAAL 141

Query: 124 AYGLDKNLKGERNVKL 139
           AYGLDKNLKGERNV +
Sbjct: 142 AYGLDKNLKGERNVLI 157

Source: Plodia interpunctella

Species: Plodia interpunctella

Genus: Plodia

Family: Pyralidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312376960|gb|EFR23904.1| hypothetical protein AND_11878 [Anopheles darlingi]

 Score =  145 bits (366), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 71/92 (77%), Positives = 79/92 (85%), Gaps = 5/92 (5%)

Query: 48  RKSFSPRCCHHSPRLFQLLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIA 107
           RK+F+P           +LTKMKETAEAYLG SV++AVITVPAYFND+QRQATKDAGAIA
Sbjct: 109 RKTFAPEEISS-----MVLTKMKETAEAYLGQSVKNAVITVPAYFNDSQRQATKDAGAIA 163

Query: 108 GLNVMRIVNEPTAAALAYGLDKNLKGERNVKL 139
           GLNVMRI+NEPTAAALAYGLDKNLKGERNV +
Sbjct: 164 GLNVMRIINEPTAAALAYGLDKNLKGERNVLI 195

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312375481|gb|EFR22847.1| hypothetical protein AND_14112 [Anopheles darlingi]

 Score =  145 bits (366), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 71/92 (77%), Positives = 79/92 (85%), Gaps = 5/92 (5%)

Query: 48  RKSFSPRCCHHSPRLFQLLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIA 107
           RK+F+P           +LTKMKETAEAYLG SV++AVITVPAYFND+QRQATKDAGAIA
Sbjct: 109 RKTFAPEEISS-----MVLTKMKETAEAYLGQSVKNAVITVPAYFNDSQRQATKDAGAIA 163

Query: 108 GLNVMRIVNEPTAAALAYGLDKNLKGERNVKL 139
           GLNVMRI+NEPTAAALAYGLDKNLKGERNV +
Sbjct: 164 GLNVMRIINEPTAAALAYGLDKNLKGERNVLI 195

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	211
FB|FBgn0001230	635	Hsp68 "Heat shock protein 68"	0.345	0.114	0.890	1.3e-29
FB|FBgn0013277	641	Hsp70Ba "Heat-shock-protein-70	0.345	0.113	0.890	2.8e-29
FB|FBgn0013278	641	Hsp70Bb "Heat-shock-protein-70	0.345	0.113	0.890	2.8e-29
FB|FBgn0013279	641	Hsp70Bc "Heat-shock-protein-70	0.345	0.113	0.890	2.8e-29
FB|FBgn0013275	642	Hsp70Aa "Heat-shock-protein-70	0.345	0.113	0.890	2.8e-29
FB|FBgn0013276	642	Hsp70Ab "Heat-shock-protein-70	0.345	0.113	0.890	2.8e-29
UNIPROTKB|Q9GSU4	643	Hsp70Ba "Major heat shock 70 k	0.345	0.113	0.876	9.8e-29
UNIPROTKB|Q9GSU7	644	Hsp70Ab "Major heat shock 70 k	0.345	0.113	0.876	9.9e-29
FB|FBgn0051354	641	Hsp70Bbb "Hsp70Bbb" [Drosophil	0.345	0.113	0.876	1.6e-28
FB|FBgn0001217	633	Hsc70-2 "Heat shock protein co	0.345	0.115	0.835	7e-28

FB|FBgn0001230 Hsp68 "Heat shock protein 68" [Drosophila melanogaster (taxid:7227)]

 Score = 335 (123.0 bits), Expect = 1.3e-29, P = 1.3e-29
 Identities = 65/73 (89%), Positives = 72/73 (98%)

Query:    65 LLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALA 124
             +LTKMKETAEAYLG +V+DAVITVPAYFND+QRQATKDAGAIAG+NV+RI+NEPTAAALA
Sbjct:   120 VLTKMKETAEAYLGTTVKDAVITVPAYFNDSQRQATKDAGAIAGINVLRIINEPTAAALA 179

Query:   125 YGLDKNLKGERNV 137
             YGLDKNLKGERNV
Sbjct:   180 YGLDKNLKGERNV 192

GO:0009408 "response to heat" evidence=ISS;NAS

GO:0005739 "mitochondrion" evidence=ISS

GO:0006457 "protein folding" evidence=ISS

GO:0051082 "unfolded protein binding" evidence=ISS

GO:0008340 "determination of adult lifespan" evidence=IMP

GO:0005811 "lipid particle" evidence=IDA

GO:0005875 "microtubule associated complex" evidence=IDA

GO:0042594 "response to starvation" evidence=IMP

GO:0031427 "response to methotrexate" evidence=IEP

GO:0022008 "neurogenesis" evidence=IMP

FB|FBgn0013277 Hsp70Ba "Heat-shock-protein-70Ba" [Drosophila melanogaster (taxid:7227)]

 Score = 332 (121.9 bits), Expect = 2.8e-29, P = 2.8e-29
 Identities = 65/73 (89%), Positives = 70/73 (95%)

Query:    65 LLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALA 124
             +LTKMKETAEAYLG S+ DAVITVPAYFND+QRQATKDAG IAGLNV+RI+NEPTAAALA
Sbjct:   120 VLTKMKETAEAYLGESITDAVITVPAYFNDSQRQATKDAGHIAGLNVLRIINEPTAAALA 179

Query:   125 YGLDKNLKGERNV 137
             YGLDKNLKGERNV
Sbjct:   180 YGLDKNLKGERNV 192

GO:0009408 "response to heat" evidence=IMP;NAS

GO:0035080 "heat shock-mediated polytene chromosome puffing" evidence=IMP

GO:0005875 "microtubule associated complex" evidence=IDA

GO:0001666 "response to hypoxia" evidence=IEP;IMP

FB|FBgn0013278 Hsp70Bb "Heat-shock-protein-70Bb" [Drosophila melanogaster (taxid:7227)]

 Score = 332 (121.9 bits), Expect = 2.8e-29, P = 2.8e-29
 Identities = 65/73 (89%), Positives = 70/73 (95%)

Query:    65 LLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALA 124
             +LTKMKETAEAYLG S+ DAVITVPAYFND+QRQATKDAG IAGLNV+RI+NEPTAAALA
Sbjct:   120 VLTKMKETAEAYLGESITDAVITVPAYFNDSQRQATKDAGHIAGLNVLRIINEPTAAALA 179

Query:   125 YGLDKNLKGERNV 137
             YGLDKNLKGERNV
Sbjct:   180 YGLDKNLKGERNV 192

GO:0009408 "response to heat" evidence=IMP;NAS

GO:0035080 "heat shock-mediated polytene chromosome puffing" evidence=IMP

GO:0005875 "microtubule associated complex" evidence=IDA

GO:0001666 "response to hypoxia" evidence=IEP;IMP

FB|FBgn0013279 Hsp70Bc "Heat-shock-protein-70Bc" [Drosophila melanogaster (taxid:7227)]

 Score = 332 (121.9 bits), Expect = 2.8e-29, P = 2.8e-29
 Identities = 65/73 (89%), Positives = 70/73 (95%)

Query:    65 LLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALA 124
             +LTKMKETAEAYLG S+ DAVITVPAYFND+QRQATKDAG IAGLNV+RI+NEPTAAALA
Sbjct:   120 VLTKMKETAEAYLGESITDAVITVPAYFNDSQRQATKDAGHIAGLNVLRIINEPTAAALA 179

Query:   125 YGLDKNLKGERNV 137
             YGLDKNLKGERNV
Sbjct:   180 YGLDKNLKGERNV 192

GO:0009408 "response to heat" evidence=IMP;NAS

GO:0035080 "heat shock-mediated polytene chromosome puffing" evidence=IMP

GO:0005875 "microtubule associated complex" evidence=IDA

GO:0001666 "response to hypoxia" evidence=IEP;IMP

GO:0031427 "response to methotrexate" evidence=IEP

FB|FBgn0013275 Hsp70Aa "Heat-shock-protein-70Aa" [Drosophila melanogaster (taxid:7227)]

 Score = 332 (121.9 bits), Expect = 2.8e-29, P = 2.8e-29
 Identities = 65/73 (89%), Positives = 70/73 (95%)

Query:    65 LLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALA 124
             +LTKMKETAEAYLG S+ DAVITVPAYFND+QRQATKDAG IAGLNV+RI+NEPTAAALA
Sbjct:   120 VLTKMKETAEAYLGESITDAVITVPAYFNDSQRQATKDAGHIAGLNVLRIINEPTAAALA 179

Query:   125 YGLDKNLKGERNV 137
             YGLDKNLKGERNV
Sbjct:   180 YGLDKNLKGERNV 192

GO:0009408 "response to heat" evidence=IMP;NAS

GO:0035080 "heat shock-mediated polytene chromosome puffing" evidence=IMP

GO:0005875 "microtubule associated complex" evidence=IDA

GO:0001666 "response to hypoxia" evidence=IEP;IMP

FB|FBgn0013276 Hsp70Ab "Heat-shock-protein-70Ab" [Drosophila melanogaster (taxid:7227)]

 Score = 332 (121.9 bits), Expect = 2.8e-29, P = 2.8e-29
 Identities = 65/73 (89%), Positives = 70/73 (95%)

Query:    65 LLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALA 124
             +LTKMKETAEAYLG S+ DAVITVPAYFND+QRQATKDAG IAGLNV+RI+NEPTAAALA
Sbjct:   120 VLTKMKETAEAYLGESITDAVITVPAYFNDSQRQATKDAGHIAGLNVLRIINEPTAAALA 179

Query:   125 YGLDKNLKGERNV 137
             YGLDKNLKGERNV
Sbjct:   180 YGLDKNLKGERNV 192

GO:0009408 "response to heat" evidence=ISS;IMP;NAS

GO:0035080 "heat shock-mediated polytene chromosome puffing" evidence=IMP

GO:0005875 "microtubule associated complex" evidence=IDA

GO:0001666 "response to hypoxia" evidence=IEP;IMP

UNIPROTKB|Q9GSU4 Hsp70Ba "Major heat shock 70 kDa protein Ba" [Drosophila simulans (taxid:7240)]

 Score = 327 (120.2 bits), Expect = 9.8e-29, P = 9.8e-29
 Identities = 64/73 (87%), Positives = 69/73 (94%)

Query:    65 LLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALA 124
             +L KMKETAEAYLG S+ DAVITVPAYFND+QRQATKDAG IAGLNV+RI+NEPTAAALA
Sbjct:   120 VLAKMKETAEAYLGESITDAVITVPAYFNDSQRQATKDAGHIAGLNVLRIINEPTAAALA 179

Query:   125 YGLDKNLKGERNV 137
             YGLDKNLKGERNV
Sbjct:   180 YGLDKNLKGERNV 192

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|Q9GSU7 Hsp70Ab "Major heat shock 70 kDa protein Ab" [Drosophila simulans (taxid:7240)]

 Score = 327 (120.2 bits), Expect = 9.9e-29, P = 9.9e-29
 Identities = 64/73 (87%), Positives = 69/73 (94%)

Query:    65 LLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALA 124
             +L KMKETAEAYLG S+ DAVITVPAYFND+QRQATKDAG IAGLNV+RI+NEPTAAALA
Sbjct:   120 VLVKMKETAEAYLGESITDAVITVPAYFNDSQRQATKDAGHIAGLNVLRIINEPTAAALA 179

Query:   125 YGLDKNLKGERNV 137
             YGLDKNLKGERNV
Sbjct:   180 YGLDKNLKGERNV 192

GO:0005575 "cellular_component" evidence=ND

GO:0009408 "response to heat" evidence=ISS

FB|FBgn0051354 Hsp70Bbb "Hsp70Bbb" [Drosophila melanogaster (taxid:7227)]

 Score = 325 (119.5 bits), Expect = 1.6e-28, P = 1.6e-28
 Identities = 64/73 (87%), Positives = 69/73 (94%)

Query:    65 LLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALA 124
             +LTKMKETAEAYLG S+ DAVITVPAYFND+QRQATKDAG IAGLNV+RI+NEPTAAALA
Sbjct:   120 VLTKMKETAEAYLGESITDAVITVPAYFNDSQRQATKDAGHIAGLNVLRIINEPTAAALA 179

Query:   125 YGLDKNLKGERNV 137
             YGLDKNLK ERNV
Sbjct:   180 YGLDKNLKDERNV 192

GO:0009408 "response to heat" evidence=ISS;IMP

GO:0035080 "heat shock-mediated polytene chromosome puffing" evidence=IMP

GO:0005811 "lipid particle" evidence=IDA

GO:0005875 "microtubule associated complex" evidence=IDA

GO:0001666 "response to hypoxia" evidence=IEP;IMP

FB|FBgn0001217 Hsc70-2 "Heat shock protein cognate 2" [Drosophila melanogaster (taxid:7227)]

 Score = 319 (117.4 bits), Expect = 7.0e-28, P = 7.0e-28
 Identities = 61/73 (83%), Positives = 69/73 (94%)

Query:    65 LLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALA 124
             +LTKM+E AE YLG  V+DAV+TVPAYFND+QRQATKDAG+IAGLNV+RI+NEPTAAALA
Sbjct:   123 VLTKMREIAEVYLGGKVKDAVVTVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALA 182

Query:   125 YGLDKNLKGERNV 137
             YGLDKNLKGERNV
Sbjct:   183 YGLDKNLKGERNV 195

GO:0006457 "protein folding" evidence=ISS

GO:0009408 "response to heat" evidence=NAS

GO:0005739 "mitochondrion" evidence=ISS

GO:0051082 "unfolded protein binding" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O97125	HSP68_DROME	No assigned EC number	0.7582	0.4075	0.1354	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	211
cd10233	376	cd10233, HSPA1-2_6-8-like_NBD, Nucleotide-binding	6e-47
PRK00290	627	PRK00290, dnaK, molecular chaperone DnaK; Provisio	4e-43
pfam00012	598	pfam00012, HSP70, Hsp70 protein	4e-41
cd10241	374	cd10241, HSPA5-like_NBD, Nucleotide-binding domain	5e-41
cd11733	377	cd11733, HSPA9-like_NBD, Nucleotide-binding domain	4e-40
cd10234	376	cd10234, HSPA9-Ssq1-like_NBD, Nucleotide-binding d	2e-39
PTZ00009	653	PTZ00009, PTZ00009, heat shock 70 kDa protein; Pro	3e-38
TIGR02350	595	TIGR02350, prok_dnaK, chaperone protein DnaK	5e-37
cd10170	369	cd10170, HSP70_NBD, Nucleotide-binding domain of t	2e-35
cd10236	355	cd10236, HscA_like_NBD, Nucleotide-binding domain	6e-35
cd10235	339	cd10235, HscC_like_NBD, Nucleotide-binding domain	2e-34
cd11734	373	cd11734, Ssq1_like_NBD, Nucleotide-binding domain	1e-33
PTZ00400	663	PTZ00400, PTZ00400, DnaK-type molecular chaperone;	2e-33
PRK13411	653	PRK13411, PRK13411, molecular chaperone DnaK; Prov	3e-32
COG0443	579	COG0443, DnaK, Molecular chaperone [Posttranslatio	3e-32
PRK05183	616	PRK05183, hscA, chaperone protein HscA; Provisiona	4e-31
PRK13410	668	PRK13410, PRK13410, molecular chaperone DnaK; Prov	7e-31
TIGR01991	599	TIGR01991, HscA, Fe-S protein assembly chaperone H	2e-29
CHL00094	621	CHL00094, dnaK, heat shock protein 70	2e-29
cd10228	381	cd10228, HSPA4_like_NDB, Nucleotide-binding domain	1e-28
PTZ00186	657	PTZ00186, PTZ00186, heat shock 70 kDa precursor pr	2e-27
PLN03184	673	PLN03184, PLN03184, chloroplast Hsp70; Provisional	3e-25
cd10230	388	cd10230, HYOU1-like_NBD, Nucleotide-binding domain	5e-20
cd10237	417	cd10237, HSPA13-like_NBD, Nucleotide-binding domai	6e-20
cd10238	375	cd10238, HSPA14-like_NBD, Nucleotide-binding domai	3e-19
PRK01433	595	PRK01433, hscA, chaperone protein HscA; Provisiona	2e-18
cd11737	383	cd11737, HSPA4_NBD, Nucleotide-binding domain of H	1e-16
cd11739	383	cd11739, HSPH1_NBD, Nucleotide-binding domain of H	3e-16
cd10232	386	cd10232, ScSsz1p_like_NBD, Nucleotide-binding doma	4e-16
cd11738	383	cd11738, HSPA4L_NBD, Nucleotide-binding domain of	2e-14
cd11732	377	cd11732, HSP105-110_like_NBD, Nucleotide-binding d	1e-12
TIGR00927	1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	1e-10
TIGR00927	1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	2e-09
PRK04195	482	PRK04195, PRK04195, replication factor C large sub	7e-09
TIGR00927	1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	4e-08
TIGR00927	1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	5e-06
pfam04147	809	pfam04147, Nop14, Nop14-like family	9e-06
pfam04147	809	pfam04147, Nop14, Nop14-like family	1e-05
pfam04147	809	pfam04147, Nop14, Nop14-like family	1e-05
pfam05758	832	pfam05758, Ycf1, Ycf1	1e-05
cd10231	415	cd10231, YegD_like, Escherichia coli YegD, a putat	2e-05
pfam03985	431	pfam03985, Paf1, Paf1	2e-05
pfam10446	449	pfam10446, DUF2457, Protein of unknown function (D	2e-05
pfam04147	809	pfam04147, Nop14, Nop14-like family	4e-05
pfam05758	832	pfam05758, Ycf1, Ycf1	4e-05
PTZ00248	319	PTZ00248, PTZ00248, eukaryotic translation initiat	4e-05
pfam11705	221	pfam11705, RNA_pol_3_Rpc31, DNA-directed RNA polym	4e-05
pfam04147	809	pfam04147, Nop14, Nop14-like family	6e-05
pfam04147	809	pfam04147, Nop14, Nop14-like family	6e-05
pfam05758	832	pfam05758, Ycf1, Ycf1	7e-05
pfam11705	221	pfam11705, RNA_pol_3_Rpc31, DNA-directed RNA polym	7e-05
pfam03344	715	pfam03344, Daxx, Daxx Family	8e-05
pfam04931	784	pfam04931, DNA_pol_phi, DNA polymerase phi	9e-05
pfam07423	214	pfam07423, DUF1510, Protein of unknown function (D	1e-04
pfam07423	214	pfam07423, DUF1510, Protein of unknown function (D	1e-04
PRK15080	267	PRK15080, PRK15080, ethanolamine utilization prote	1e-04
cd10229	404	cd10229, HSPA12_like_NBD, Nucleotide-binding domai	1e-04
pfam04147	809	pfam04147, Nop14, Nop14-like family	2e-04
pfam04147	809	pfam04147, Nop14, Nop14-like family	2e-04
pfam03344	715	pfam03344, Daxx, Daxx Family	2e-04
pfam06213	282	pfam06213, CobT, Cobalamin biosynthesis protein Co	2e-04
cd00012	185	cd00012, NBD_sugar-kinase_HSP70_actin, Nucleotide-	2e-04
pfam09073	424	pfam09073, BUD22, BUD22	2e-04
pfam11705	221	pfam11705, RNA_pol_3_Rpc31, DNA-directed RNA polym	3e-04
PTZ00415	2849	PTZ00415, PTZ00415, transmission-blocking target a	3e-04
pfam05285	317	pfam05285, SDA1, SDA1	3e-04
pfam04147	809	pfam04147, Nop14, Nop14-like family	4e-04
pfam11705	221	pfam11705, RNA_pol_3_Rpc31, DNA-directed RNA polym	4e-04
PRK12329	449	PRK12329, nusA, transcription elongation factor Nu	4e-04
PRK12329	449	PRK12329, nusA, transcription elongation factor Nu	6e-04
COG4547	620	COG4547, CobT, Cobalamin biosynthesis protein CobT	6e-04
COG4499	434	COG4499, COG4499, Predicted membrane protein [Func	6e-04
PTZ00415	2849	PTZ00415, PTZ00415, transmission-blocking target a	7e-04
pfam05285	317	pfam05285, SDA1, SDA1	7e-04
TIGR00927	1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	8e-04
TIGR00927	1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	8e-04
pfam03344	715	pfam03344, Daxx, Daxx Family	8e-04
TIGR01651	600	TIGR01651, CobT, cobaltochelatase, CobT subunit	8e-04
PHA03169	413	PHA03169, PHA03169, hypothetical protein; Provisio	9e-04
TIGR00927	1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	0.001
TIGR00927	1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	0.001
TIGR00927	1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	0.001
pfam03344	715	pfam03344, Daxx, Daxx Family	0.001
PRK12329	449	PRK12329, nusA, transcription elongation factor Nu	0.001
pfam14153	185	pfam14153, Spore_coat_CotO, Spore coat protein Cot	0.001
pfam11081	172	pfam11081, DUF2890, Protein of unknown function (D	0.001
pfam11081	172	pfam11081, DUF2890, Protein of unknown function (D	0.001
pfam08553	794	pfam08553, VID27, VID27 cytoplasmic protein	0.001
COG1269	660	COG1269, NtpI, Archaeal/vacuolar-type H+-ATPase su	0.001
pfam01698	382	pfam01698, FLO_LFY, Floricaula / Leafy protein	0.001
pfam02459	548	pfam02459, Adeno_terminal, Adenoviral DNA terminal	0.001
pfam02459	548	pfam02459, Adeno_terminal, Adenoviral DNA terminal	0.001
pfam03286	198	pfam03286, Pox_Ag35, Pox virus Ag35 surface protei	0.001
TIGR00927	1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	0.002
TIGR00927	1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	0.002
pfam04147	809	pfam04147, Nop14, Nop14-like family	0.002
pfam05758	832	pfam05758, Ycf1, Ycf1	0.002
pfam03985	431	pfam03985, Paf1, Paf1	0.002
pfam06213	282	pfam06213, CobT, Cobalamin biosynthesis protein Co	0.002
COG4547	620	COG4547, CobT, Cobalamin biosynthesis protein CobT	0.002
PHA03169	413	PHA03169, PHA03169, hypothetical protein; Provisio	0.002
pfam11081	172	pfam11081, DUF2890, Protein of unknown function (D	0.002
PRK04019	330	PRK04019, rplP0, acidic ribosomal protein P0; Vali	0.002
TIGR00927	1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	0.003
pfam03985	431	pfam03985, Paf1, Paf1	0.003
pfam03344	715	pfam03344, Daxx, Daxx Family	0.003
pfam06213	282	pfam06213, CobT, Cobalamin biosynthesis protein Co	0.003
COG4547	620	COG4547, CobT, Cobalamin biosynthesis protein CobT	0.003
COG4547	620	COG4547, CobT, Cobalamin biosynthesis protein CobT	0.003
pfam02459	548	pfam02459, Adeno_terminal, Adenoviral DNA terminal	0.003
PLN03142	1033	PLN03142, PLN03142, Probable chromatin-remodeling	0.003
pfam12569	516	pfam12569, NARP1, NMDA receptor-regulated protein	0.003
PTZ00415	2849	PTZ00415, PTZ00415, transmission-blocking target a	0.004
PTZ00415	2849	PTZ00415, PTZ00415, transmission-blocking target a	0.004
PRK12329	449	PRK12329, nusA, transcription elongation factor Nu	0.004
PHA03169	413	PHA03169, PHA03169, hypothetical protein; Provisio	0.004
pfam08553	794	pfam08553, VID27, VID27 cytoplasmic protein	0.004
pfam02459	548	pfam02459, Adeno_terminal, Adenoviral DNA terminal	0.004
pfam09747	178	pfam09747, DUF2052, Coiled-coil domain containing	0.004
pfam06658	142	pfam06658, DUF1168, Protein of unknown function (D	0.004
PTZ00438	374	PTZ00438, PTZ00438, gamete antigen 27/25-like prot	0.004
pfam09184	285	pfam09184, PPP4R2, PPP4R2	0.004

>gnl|CDD|212675 cd10233, HSPA1-2_6-8-like_NBD, Nucleotide-binding domain of HSPA1-A, -B, -L, HSPA-2, -6, -7, -8, and similar proteins

 Score =  158 bits (401), Expect = 6e-47
 Identities = 59/72 (81%), Positives = 65/72 (90%)

Query: 66  LTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAY 125
           LTKMKE AEAYLG +V +AVITVPAYFND+QRQATKDAG IAGLNV+RI+NEPTAAA+AY
Sbjct: 119 LTKMKEIAEAYLGKTVTNAVITVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAY 178

Query: 126 GLDKNLKGERNV 137
           GLDK   GERNV
Sbjct: 179 GLDKKGGGERNV 190

This subfamily includes human HSPA1A (70-kDa heat shock protein 1A, also known as HSP72; HSPA1; HSP70I; HSPA1B; HSP70-1; HSP70-1A), HSPA1B (70-kDa heat shock protein 1B, also known as HSPA1A; HSP70-2; HSP70-1B), and HSPA1L (70-kDa heat shock protein 1-like, also known as HSP70T; hum70t; HSP70-1L; HSP70-HOM). The genes for these three HSPA1 proteins map in close proximity on the major histocompatibility complex (MHC) class III region on chromosome 6, 6p21.3. This subfamily also includes human HSPA8 (heat shock 70kDa protein 8, also known as LAP1; HSC54; HSC70; HSC71; HSP71; HSP73; NIP71; HSPA10; the HSPA8 gene maps to 11q24.1), human HSPA2 (70-kDa heat shock protein 2, also known as HSP70-2; HSP70-3, the HSPA2 gene maps to 14q24.1), human HSPA6 (also known as heat shock 70kDa protein 6 (HSP70B') gi 94717614, the HSPA6 gene maps to 1q23.3), human HSPA7 (heat shock 70kDa protein 7 , also known as HSP70B; the HSPA7 gene maps to 1q23.3) and Saccharmoyces cerevisiae Stress-Seventy subfamily B/Ssb1p. This subfamily belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Associations of polymorphisms within the MHC-III HSP70 gene locus with longevity, systemic lupus erythematosus, Meniere's disease, noise-induced hearing loss, high-altitude pulmonary edema, and coronary heart disease, have been found. HSPA2 is involved in cancer cell survival, is required for maturation of male gametophytes, and is linked to male infertility. The induction of HSPA6 is a biomarker of cellular stress. HSPA8 participates in the folding and trafficking of client proteins to different subcellular compartments, and in the signal transduction and apoptosis process; it has been shown to protect cardiomyocytes against oxidative stress partly through an interaction with alpha-enolase. S. cerevisiae Ssb1p, is part of the ribosome-associated complex (RAC), it acts as a chaperone for nascent polypeptides, and is important for translation fidelity; Ssb1p is also a [PSI+] prion-curing factor. Length = 376

>gnl|CDD|234715 PRK00290, dnaK, molecular chaperone DnaK; Provisional

 Score =  152 bits (386), Expect = 4e-43
 Identities = 53/74 (71%), Positives = 61/74 (82%), Gaps = 2/74 (2%)

Query: 64  QLLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAAL 123
            +L K+K+ AE YLG  V +AVITVPAYFNDAQRQATKDAG IAGL V+RI+NEPTAAAL
Sbjct: 116 MILQKLKKDAEDYLGEKVTEAVITVPAYFNDAQRQATKDAGKIAGLEVLRIINEPTAAAL 175

Query: 124 AYGLDKNLKGERNV 137
           AYGLDK  KG+  +
Sbjct: 176 AYGLDK--KGDEKI 187

Length = 627

>gnl|CDD|215656 pfam00012, HSP70, Hsp70 protein

 Score =  146 bits (371), Expect = 4e-41
 Identities = 60/74 (81%), Positives = 64/74 (86%), Gaps = 1/74 (1%)

Query: 64  QLLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAAL 123
            +L K+KETAEAYLG  V DAVITVPAYFNDAQRQATKDAG IAGLNV+RI+NEPTAAAL
Sbjct: 116 MVLQKLKETAEAYLGEPVTDAVITVPAYFNDAQRQATKDAGRIAGLNVLRIINEPTAAAL 175

Query: 124 AYGLDKNLKGERNV 137
           AYGLDK    ERNV
Sbjct: 176 AYGLDKK-DKERNV 188

Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region. Length = 598

>gnl|CDD|212681 cd10241, HSPA5-like_NBD, Nucleotide-binding domain of human HSPA5 and similar proteins

 Score =  142 bits (361), Expect = 5e-41
 Identities = 57/72 (79%), Positives = 64/72 (88%), Gaps = 1/72 (1%)

Query: 66  LTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAY 125
           LTKMKE AEAYLG  V+ AV+TVPAYFNDAQRQATKDAG IAGLNV+RI+NEPTAAA+AY
Sbjct: 121 LTKMKEIAEAYLGKKVKHAVVTVPAYFNDAQRQATKDAGTIAGLNVVRIINEPTAAAIAY 180

Query: 126 GLDKNLKGERNV 137
           GLDK   GE+N+
Sbjct: 181 GLDKK-GGEKNI 191

This subfamily includes human HSPA5 (also known as 70-kDa heat shock protein 5, glucose-regulated protein 78/GRP78, and immunoglobulin heavy chain-binding protein/BIP, MIF2; the gene encoding HSPA5 maps to 9q33.3.), Sacchaormyces cerevisiae Kar2p (also known as Grp78p), and related proteins. This subfamily belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. HSPA5 and Kar2p are chaperones of the endoplasmic reticulum (ER). Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Multiple ER DNAJ domain proteins have been identified and may exist in distinct complexes with HSPA5 in various locations in the ER, for example DNAJC3-p58IPK in the lumen. HSPA5-NEFs include SIL1 and an atypical HSP70 family protein HYOU1/ORP150. The ATPase activity of Kar2p is stimulated by the NEFs: Sil1p and Lhs1p. Length = 374

>gnl|CDD|212683 cd11733, HSPA9-like_NBD, Nucleotide-binding domain of human HSPA9, Escherichia coli DnaK, and similar proteins

 Score =  140 bits (354), Expect = 4e-40
 Identities = 54/64 (84%), Positives = 60/64 (93%)

Query: 66  LTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAY 125
           L KMKETAEAYLG  V++AVITVPAYFND+QRQATKDAG IAGLNV+R++NEPTAAALAY
Sbjct: 120 LMKMKETAEAYLGKPVKNAVITVPAYFNDSQRQATKDAGQIAGLNVLRVINEPTAAALAY 179

Query: 126 GLDK 129
           GLDK
Sbjct: 180 GLDK 183

This subgroup includes human mitochondrial HSPA9 (also known as 70-kDa heat shock protein 9, CSA; MOT; MOT2; GRP75; PBP74; GRP-75; HSPA9B; MTHSP75; the gene encoding HSPA9 maps to 5q31.1), Escherichia coli DnaK, and Saccharomyces cerevisiae Stress-Seventy subfamily C/Ssc1p (also called mtHSP70, Endonuclease SceI 75 kDa subunit). It belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs); for Escherichia coli DnaK, these are the DnaJ and GrpE, respectively. HSPA9 is involved in multiple processses including mitochondrial import, antigen processing, control of cellular proliferation and differentiation, and regulation of glucose responses. During glucose deprivation-induced cellular stress, HSPA9 plays an important role in the suppression of apoptosis by inhibiting a conformational change in Bax that allow the release of cytochrome c. DnaK modulates the heat shock response in Escherichia coli. It protects E. coli from protein carbonylation, an irreversible oxidative modification that increases during organism aging and bacterial growth arrest. Under severe thermal stress, it functions as part of a bi-chaperone system: the DnaK system and the ring-forming AAA+ chaperone ClpB (Hsp104) system, to promote cell survival. DnaK has also been shown to cooperate with GroEL and the ribosome-associated Escherichia coli Trigger Factor in the proper folding of cytosolic proteins. S. cerevisiae Ssc1p is the major HSP70 chaperone of the mitochondrial matrix, promoting translocation of proteins from the cytosol, across the inner membrane, to the matrix, and their subsequent folding. Ssc1p interacts with Tim44, a peripheral inner membrane protein associated with the TIM23 protein translocase. It is also a subunit of the endoSceI site-specific endoDNase and is required for full endoSceI activity. Ssc1p plays roles in the import of Yfh1p, a nucleus-encoded mitochondrial protein involved in iron homeostasis (and a homolog of human frataxin, implicated in the neurodegenerative disease, Friedreich's ataxia). Ssc1 also participates in translational regulation of cytochrome c oxidase (COX) biogenesis by interacting with Mss51 and Mss51-containing complexes. Length = 377

>gnl|CDD|212676 cd10234, HSPA9-Ssq1-like_NBD, Nucleotide-binding domain of human HSPA9 and similar proteins

 Score =  138 bits (350), Expect = 2e-39
 Identities = 52/66 (78%), Positives = 58/66 (87%)

Query: 64  QLLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAAL 123
            +L K+KE AEAYLG  V +AVITVPAYFND+QRQATKDAG IAGL V+RI+NEPTAAAL
Sbjct: 117 MILQKLKEDAEAYLGEKVTEAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAAL 176

Query: 124 AYGLDK 129
           AYGLDK
Sbjct: 177 AYGLDK 182

This subfamily includes human mitochondrial HSPA9 (also known as 70-kDa heat shock protein 9, CSA; MOT; MOT2; GRP75; PBP74; GRP-75; HSPA9B; MTHSP75; the gene encoding HSPA9 maps to 5q31.1), Escherichia coli DnaK, Saccharomyces cerevisiae Stress-seventy subfamily Q protein 1/Ssq1p (also called Ssc2p, Ssh1p, mtHSP70 homolog), and S. cerevisiae Stress-Seventy subfamily C/Ssc1p (also called mtHSP70, Endonuclease SceI 75 kDa subunit). It belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs); for Escherichia coli DnaK, these are the DnaJ and GrpE, respectively. Length = 376

>gnl|CDD|240227 PTZ00009, PTZ00009, heat shock 70 kDa protein; Provisional

 Score =  139 bits (351), Expect = 3e-38
 Identities = 57/73 (78%), Positives = 65/73 (89%)

Query: 65  LLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALA 124
           +L KMKE AEAYLG  V+DAV+TVPAYFND+QRQATKDAG IAGLNV+RI+NEPTAAA+A
Sbjct: 124 VLQKMKEIAEAYLGKQVKDAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIA 183

Query: 125 YGLDKNLKGERNV 137
           YGLDK   GE+NV
Sbjct: 184 YGLDKKGDGEKNV 196

Length = 653

>gnl|CDD|233830 TIGR02350, prok_dnaK, chaperone protein DnaK

 Score =  135 bits (341), Expect = 5e-37
 Identities = 54/72 (75%), Positives = 62/72 (86%)

Query: 64  QLLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAAL 123
            +L K+K+ AEAYLG  V +AVITVPAYFNDAQRQATKDAG IAGL V+RI+NEPTAAAL
Sbjct: 113 MILQKLKKDAEAYLGEKVTEAVITVPAYFNDAQRQATKDAGKIAGLEVLRIINEPTAAAL 172

Query: 124 AYGLDKNLKGER 135
           AYGLDK+ K E+
Sbjct: 173 AYGLDKSKKDEK 184

Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved [Protein fate, Protein folding and stabilization]. Length = 595

>gnl|CDD|212667 cd10170, HSP70_NBD, Nucleotide-binding domain of the HSP70 family

 Score =  127 bits (322), Expect = 2e-35
 Identities = 51/73 (69%), Positives = 61/73 (83%)

Query: 65  LLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALA 124
           +L K+KE AEAYLG  V +AVITVPAYFNDAQR+ATK+A  IAGLNV+R++NEPTAAALA
Sbjct: 115 ILKKLKEDAEAYLGEPVTEAVITVPAYFNDAQREATKEAAEIAGLNVVRLINEPTAAALA 174

Query: 125 YGLDKNLKGERNV 137
           YGLDK  +  R +
Sbjct: 175 YGLDKKDEKGRTI 187

HSP70 (70-kDa heat shock protein) family chaperones assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Some HSP70 family members are not chaperones but instead, function as NEFs to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle, some may function as both chaperones and NEFs. Length = 369

>gnl|CDD|212678 cd10236, HscA_like_NBD, Nucleotide-binding domain of HscA and similar proteins

 Score =  126 bits (318), Expect = 6e-35
 Identities = 47/69 (68%), Positives = 57/69 (82%)

Query: 65  LLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALA 124
           +L  +KE AE  LG  ++ AVITVPAYF+DAQRQATKDA  +AGLNV+R++NEPTAAALA
Sbjct: 113 ILKALKERAEKSLGGEIKGAVITVPAYFDDAQRQATKDAARLAGLNVLRLLNEPTAAALA 172

Query: 125 YGLDKNLKG 133
           YGLDK  +G
Sbjct: 173 YGLDKKKEG 181

Escherichia coli HscA (heat shock cognate protein A, also called Hsc66), belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). HscA's partner J-domain protein is HscB; it does not appear to require a NEF, and has been shown to be induced by cold-shock. The HscA-HscB chaperone/co-chaperone pair is involved in [Fe-S] cluster assembly. Length = 355

>gnl|CDD|212677 cd10235, HscC_like_NBD, Nucleotide-binding domain of Escherichia coli HscC and similar proteins

 Score =  124 bits (315), Expect = 2e-34
 Identities = 44/66 (66%), Positives = 52/66 (78%)

Query: 65  LLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALA 124
           +L  +KE AEAYLG  V +AVI+VPAYFND QR+ATK AG +AGL V R++NEPTAAALA
Sbjct: 91  VLRSLKEDAEAYLGEPVTEAVISVPAYFNDEQRKATKRAGELAGLKVERLINEPTAAALA 150

Query: 125 YGLDKN 130
           YGL   
Sbjct: 151 YGLHDK 156

This subfamily includes Escherichia coli HscC (also called heat shock cognate protein C, Hsc62, or YbeW) and the the putative DnaK-like protein Escherichia coli ECs0689. It belongs to the heat shock protein 70 (Hsp70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, Hsp70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Two genes in the vicinity of the HscC gene code for potential cochaperones: J-domain containing proteins, DjlB/YbeS and DjlC/YbeV. HscC and its co-chaperone partners may play a role in the SOS DNA damage response. HscC does not appear to require a NEF. Length = 339

>gnl|CDD|212684 cd11734, Ssq1_like_NBD, Nucleotide-binding domain of Saccharomyces cerevisiae Ssq1 and similar proteins

 Score =  123 bits (310), Expect = 1e-33
 Identities = 50/66 (75%), Positives = 59/66 (89%)

Query: 65  LLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALA 124
           +L K+K+TAEAYLG  V +AVITVPAYFND+QRQATKDAG +AGL V+RI+NEPTAAALA
Sbjct: 118 VLKKLKKTAEAYLGKRVDEAVITVPAYFNDSQRQATKDAGTLAGLKVLRIINEPTAAALA 177

Query: 125 YGLDKN 130
           YG+DK 
Sbjct: 178 YGIDKR 183

Ssq1p (also called Stress-seventy subfamily Q protein 1, Ssc2p, Ssh1p, mtHSP70 homolog) belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). S. cerevisiae Ssq1p is a mitochondrial chaperone that is involved in iron-sulfur (Fe/S) center biogenesis. Ssq1p plays a role in the maturation of Yfh1p, a nucleus-encoded mitochondrial protein involved in iron homeostasis (and a homolog of human frataxin, implicated in the neurodegenerative disease, Friedreich's ataxia). Length = 373

>gnl|CDD|240403 PTZ00400, PTZ00400, DnaK-type molecular chaperone; Provisional

 Score =  125 bits (316), Expect = 2e-33
 Identities = 52/66 (78%), Positives = 61/66 (92%)

Query: 65  LLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALA 124
           +L KMKETAE+YLG  V+ AVITVPAYFND+QRQATKDAG IAGL+V+RI+NEPTAAALA
Sbjct: 158 VLEKMKETAESYLGRKVKQAVITVPAYFNDSQRQATKDAGKIAGLDVLRIINEPTAAALA 217

Query: 125 YGLDKN 130
           +G+DKN
Sbjct: 218 FGMDKN 223

Length = 663

>gnl|CDD|184039 PRK13411, PRK13411, molecular chaperone DnaK; Provisional

 Score =  122 bits (308), Expect = 3e-32
 Identities = 51/65 (78%), Positives = 56/65 (86%)

Query: 65  LLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALA 124
           +L K+K+ AEAYLG  V  AVITVPAYF DAQRQATKDAG IAGL V+RI+NEPTAAALA
Sbjct: 117 ILQKLKQDAEAYLGEPVTQAVITVPAYFTDAQRQATKDAGTIAGLEVLRIINEPTAAALA 176

Query: 125 YGLDK 129
           YGLDK
Sbjct: 177 YGLDK 181

Length = 653

>gnl|CDD|223520 COG0443, DnaK, Molecular chaperone [Posttranslational modification, protein turnover, chaperones]

 Score =  121 bits (306), Expect = 3e-32
 Identities = 56/72 (77%), Positives = 61/72 (84%), Gaps = 2/72 (2%)

Query: 66  LTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAY 125
           LTK+KE AEAYLG  V DAVITVPAYFNDAQRQATKDA  IAGLNV+R++NEPTAAALAY
Sbjct: 105 LTKLKEDAEAYLGEKVTDAVITVPAYFNDAQRQATKDAARIAGLNVLRLINEPTAAALAY 164

Query: 126 GLDKNLKGERNV 137
           GLDK    E+ V
Sbjct: 165 GLDK--GKEKTV 174

Length = 579

>gnl|CDD|235360 PRK05183, hscA, chaperone protein HscA; Provisional

 Score =  119 bits (300), Expect = 4e-31
 Identities = 43/68 (63%), Positives = 54/68 (79%)

Query: 66  LTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAY 125
           L  +++ AE  LG  +  AVITVPAYF+DAQRQATKDA  +AGLNV+R++NEPTAAA+AY
Sbjct: 134 LKALRQRAEETLGGELDGAVITVPAYFDDAQRQATKDAARLAGLNVLRLLNEPTAAAIAY 193

Query: 126 GLDKNLKG 133
           GLD   +G
Sbjct: 194 GLDSGQEG 201

Length = 616

>gnl|CDD|184038 PRK13410, PRK13410, molecular chaperone DnaK; Provisional

 Score =  118 bits (298), Expect = 7e-31
 Identities = 46/65 (70%), Positives = 53/65 (81%)

Query: 65  LLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALA 124
           +L K+ + A  YLG  V  AVITVPAYFND+QRQAT+DAG IAGL V RI+NEPTAAALA
Sbjct: 119 ILRKLADDASRYLGEPVTGAVITVPAYFNDSQRQATRDAGRIAGLEVERILNEPTAAALA 178

Query: 125 YGLDK 129
           YGLD+
Sbjct: 179 YGLDR 183

Length = 668

>gnl|CDD|233673 TIGR01991, HscA, Fe-S protein assembly chaperone HscA

 Score =  113 bits (286), Expect = 2e-29
 Identities = 46/70 (65%), Positives = 58/70 (82%)

Query: 64  QLLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAAL 123
           ++L K+K+ AE  LG  +  AVITVPAYF+DAQRQATKDA  +AGLNV+R++NEPTAAA+
Sbjct: 112 EILKKLKQRAEESLGGDLVGAVITVPAYFDDAQRQATKDAARLAGLNVLRLLNEPTAAAV 171

Query: 124 AYGLDKNLKG 133
           AYGLDK  +G
Sbjct: 172 AYGLDKASEG 181

The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK [Protein fate, Protein folding and stabilization]. Length = 599

>gnl|CDD|214360 CHL00094, dnaK, heat shock protein 70

 Score =  114 bits (286), Expect = 2e-29
 Identities = 49/66 (74%), Positives = 56/66 (84%)

Query: 64  QLLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAAL 123
           Q+L K+ E A  YLG +V  AVITVPAYFND+QRQATKDAG IAGL V+RI+NEPTAA+L
Sbjct: 118 QVLRKLVEDASKYLGETVTQAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAASL 177

Query: 124 AYGLDK 129
           AYGLDK
Sbjct: 178 AYGLDK 183

Length = 621

>gnl|CDD|212670 cd10228, HSPA4_like_NDB, Nucleotide-binding domain of 105/110 kDa heat shock proteins including HSPA4 and similar proteins

 Score =  109 bits (276), Expect = 1e-28
 Identities = 44/84 (52%), Positives = 54/84 (64%), Gaps = 7/84 (8%)

Query: 65  LLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALA 124
           LLTK+KE AE  L   V D VI+VP+YF DAQR+A  DA  IAGLN +R++NE TA ALA
Sbjct: 120 LLTKLKEIAEKALKGKVTDCVISVPSYFTDAQRRALLDAAQIAGLNCLRLMNETTATALA 179

Query: 125 YGLDKNLKGERNVKLPKMLEPLLV 148
           YG+ K         LP+  +P  V
Sbjct: 180 YGIYKT-------DLPEEEKPRNV 196

This subgroup includes the human proteins, HSPA4 (also known as 70-kDa heat shock protein 4, APG-2, HS24/P52, hsp70 RY, and HSPH2; the human HSPA4 gene maps to 5q31.1), HSPA4L (also known as 70-kDa heat shock protein 4-like, APG-1, HSPH3, and OSP94; the human HSPA4L gene maps to 4q28), and HSPH1 (also known as heat shock 105kDa/110kDa protein 1, HSP105; HSP105A; HSP105B; NY-CO-25; the human HSPH1 gene maps to 13q12.3), Saccharomyces cerevisiae Sse1p and Sse2p, and a sea urchin sperm receptor. It belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family, and includes proteins believed to function generally as co-chaperones of HSP70 chaperones, acting as nucleotide exchange factors (NEFs), to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is also regulated by J-domain proteins. Length = 381

>gnl|CDD|140213 PTZ00186, PTZ00186, heat shock 70 kDa precursor protein; Provisional

 Score =  108 bits (271), Expect = 2e-27
 Identities = 52/65 (80%), Positives = 59/65 (90%)

Query: 65  LLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALA 124
           +L KMKETAE +LGH V +AV+T PAYFNDAQRQATKDAG IAGLNV+R+VNEPTAAALA
Sbjct: 144 VLEKMKETAENFLGHKVSNAVVTCPAYFNDAQRQATKDAGTIAGLNVIRVVNEPTAAALA 203

Query: 125 YGLDK 129
           YG+DK
Sbjct: 204 YGMDK 208

Length = 657

>gnl|CDD|215618 PLN03184, PLN03184, chloroplast Hsp70; Provisional

 Score =  102 bits (256), Expect = 3e-25
 Identities = 43/66 (65%), Positives = 52/66 (78%)

Query: 64  QLLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAAL 123
           Q+L K+ + A  +L   V  AVITVPAYFND+QR ATKDAG IAGL V+RI+NEPTAA+L
Sbjct: 155 QVLRKLVDDASKFLNDKVTKAVITVPAYFNDSQRTATKDAGRIAGLEVLRIINEPTAASL 214

Query: 124 AYGLDK 129
           AYG +K
Sbjct: 215 AYGFEK 220

Length = 673

>gnl|CDD|212672 cd10230, HYOU1-like_NBD, Nucleotide-binding domain of human HYOU1 and similar proteins

 Score = 86.5 bits (215), Expect = 5e-20
 Identities = 35/74 (47%), Positives = 45/74 (60%), Gaps = 1/74 (1%)

Query: 66  LTKMKETAEAYLG-HSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALA 124
           L   K+ AE +     V+D VITVP YF  AQRQA  DA  +AGLNV+ +VN+ TAAAL 
Sbjct: 119 LNYAKKLAEEHAKEAPVKDVVITVPPYFTQAQRQALLDAAELAGLNVLALVNDGTAAALN 178

Query: 125 YGLDKNLKGERNVK 138
           Y LD+  +  +   
Sbjct: 179 YALDRRFENNKPQY 192

This subgroup includes human HYOU1 (also known as human hypoxia up-regulated 1, GRP170; HSP12A; ORP150; GRP-170; ORP-150; the human HYOU1 gene maps to11q23.1-q23.3) and Saccharomyces cerevisiae Lhs1p (also known as Cer1p, SsI1). Mammalian HYOU1 functions as a nucleotide exchange factor (NEF) for HSPA5 (alos known as BiP, Grp78 or HspA5) and may also function as a HSPA5-independent chaperone. S. cerevisiae Lhs1p, does not have a detectable endogenous ATPase activity like canonical HSP70s, but functions as a NEF for Kar2p; it's interaction with Kar2p is stimulated by nucleotide-binding. In addition, Lhs1p has a nucleotide-independent holdase activity that prevents heat-induced aggregation of proteins in vitro. This subgroup belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family. HSP105/110s are believed to function generally as co-chaperones of HSP70 chaperones, acting as NEFs, to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is also regulated by J-domain proteins. Length = 388

>gnl|CDD|212679 cd10237, HSPA13-like_NBD, Nucleotide-binding domain of human HSPA13 and similar proteins

 Score = 86.4 bits (214), Expect = 6e-20
 Identities = 38/66 (57%), Positives = 50/66 (75%)

Query: 64  QLLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAAL 123
           +L+ K+++ AE YLG  V  AVI+VPA F++ QR AT  A  +AGL V+R++NEPTAAAL
Sbjct: 141 RLILKLRKMAEKYLGTPVGKAVISVPAEFDEKQRNATVKAANLAGLEVLRVINEPTAAAL 200

Query: 124 AYGLDK 129
           AYGL K
Sbjct: 201 AYGLHK 206

Human HSPA13 (also called 70-kDa heat shock protein 13, STCH, "stress 70 protein chaperone, microsome-associated, 60kD", "stress 70 protein chaperone, microsome-associated, 60kDa"; the gene encoding HSPA13 maps to 21q11.1) belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). STCH contains an NBD but lacks an SBD. STCH may function to regulate cell proliferation and survival, and modulate the TRAIL-mediated cell death pathway. The HSPA13 gene is a candidate stomach cancer susceptibility gene; a mutation in the NBD coding region of HSPA13 has been identified in stomach cancer cells. The NBD of HSPA13 interacts with the ubiquitin-like proteins Chap1 and Chap2, implicating HSPA13 in regulating cell cycle and cell death events. HSPA13 is induced by the Ca2+ ionophore A23187. Length = 417

>gnl|CDD|212680 cd10238, HSPA14-like_NBD, Nucleotide-binding domain of human HSPA14 and similar proteins

 Score = 84.4 bits (209), Expect = 3e-19
 Identities = 34/75 (45%), Positives = 52/75 (69%)

Query: 65  LLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALA 124
           +  KMKE A++ LG   +D VITVP YF++ Q+ A ++A   AG NV+RI++EP+AAALA
Sbjct: 119 IFKKMKEIAQSALGSDSKDVVITVPVYFSEKQKLALREAAEEAGFNVLRIIHEPSAAALA 178

Query: 125 YGLDKNLKGERNVKL 139
           YG+ ++    ++  L
Sbjct: 179 YGIGQDSPTGKSYVL 193

Human HSPA14 (also known as 70-kDa heat shock protein 14, HSP70L1, HSP70-4; the gene encoding HSPA14 maps to 10p13), is ribosome-associated and belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). HSPA14 interacts with the J-protein MPP11 to form the mammalian ribosome-associated complex (mRAC). HSPA14 participates in a pathway along with Nijmegen breakage syndrome 1 (NBS1, also known as p85 or nibrin), heat shock transcription factor 4b (HSF4b), and HSPA4 (belonging to a different subfamily), that induces tumor migration, invasion, and transformation. HSPA14 is a potent T helper cell (Th1) polarizing adjuvant that contributes to antitumor immune responses. Length = 375

>gnl|CDD|234955 PRK01433, hscA, chaperone protein HscA; Provisional

 Score = 82.6 bits (204), Expect = 2e-18
 Identities = 36/70 (51%), Positives = 46/70 (65%)

Query: 64  QLLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAAL 123
           ++   +K  AE  L  ++  AVITVPA+FNDA R     A  IAG  V+R++ EPTAAA 
Sbjct: 124 EIFIYLKNQAEEQLKTNITKAVITVPAHFNDAARGEVMLAAKIAGFEVLRLIAEPTAAAY 183

Query: 124 AYGLDKNLKG 133
           AYGL+KN KG
Sbjct: 184 AYGLNKNQKG 193

Length = 595

>gnl|CDD|212687 cd11737, HSPA4_NBD, Nucleotide-binding domain of HSPA4

 Score = 76.6 bits (188), Expect = 1e-16
 Identities = 36/65 (55%), Positives = 49/65 (75%)

Query: 65  LLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALA 124
           LLTK+KETAE+ L   V D V++VP ++ DA+R++  DA  IAGLN +R++NE TA ALA
Sbjct: 120 LLTKLKETAESALKKPVVDCVVSVPCFYTDAERRSVMDATQIAGLNCLRLMNETTAVALA 179

Query: 125 YGLDK 129
           YG+ K
Sbjct: 180 YGIYK 184

Human HSPA4 (also known as 70-kDa heat shock protein 4, APG-2, HS24/P52, hsp70 RY, and HSPH2; the human HSPA4 gene maps to 5q31.1) responds to acidic pH stress, is involved in the radioadaptive response, is required for normal spermatogenesis and is overexpressed in hepatocellular carcinoma. It participates in a pathway along with NBS1 (Nijmegen breakage syndrome 1, also known as p85 or nibrin), heat shock transcription factor 4b (HDF4b), and HSPA14 (belonging to a different HSP70 subfamily) that induces tumor migration, invasion, and transformation. HSPA4 expression in sperm was increased in men with oligozoospermia, especially in those with varicocele. HSPA4 belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family. HSP105/110s are believed to function generally as co-chaperones of HSP70 chaperones, acting as nucleotide exchange factors (NEFs), to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is also regulated by J-domain proteins. Length = 383

>gnl|CDD|212689 cd11739, HSPH1_NBD, Nucleotide-binding domain of HSPH1

 Score = 75.8 bits (186), Expect = 3e-16
 Identities = 35/65 (53%), Positives = 47/65 (72%)

Query: 65  LLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALA 124
           LLTK+KETAE  L   V D VI+VP++F DA+R++  DA  I GLN +R++N+ TA AL 
Sbjct: 120 LLTKLKETAENNLKKPVTDCVISVPSFFTDAERRSVLDAAQIVGLNCLRLMNDMTAVALN 179

Query: 125 YGLDK 129
           YG+ K
Sbjct: 180 YGIYK 184

Human HSPH1 (also known as heat shock 105kDa/110kDa protein 1, HSP105; HSP105A; HSP105B; NY-CO-25; the human HSPH1 gene maps to 13q12.3) suppresses the aggregation of denatured proteins caused by heat shock in vitro, and may substitute for HSP70 family proteins to suppress the aggregation of denatured proteins in cells under severe stress. It reduces the protein aggregation and cytotoxicity associated with Polyglutamine (PolyQ) diseases, including Huntington's disease, which are a group of inherited neurodegenerative disorders sharing the characteristic feature of having insoluble protein aggregates in neurons. The expression of HSPH1 is elevated in various malignant tumors, including malignant melanoma, and there is a direct correlation between HSPH1 expression and B-cell non-Hodgkin lymphomas (B-NHLs) aggressiveness and proliferation. HSPH1 belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family. HSP105/110s are believed to function generally as co-chaperones of HSP70 chaperones, acting as nucleotide exchange factors (NEFs), to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is also regulated by J-domain proteins. Length = 383

>gnl|CDD|212674 cd10232, ScSsz1p_like_NBD, Nucleotide-binding domain of Saccharmomyces cerevisiae Ssz1pp and similar proteins

 Score = 75.5 bits (186), Expect = 4e-16
 Identities = 28/66 (42%), Positives = 41/66 (62%)

Query: 65  LLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALA 124
            L ++KE AE +LG  V  AV++VP +F+D Q +A   A   AGL V++++ EP AA LA
Sbjct: 121 FLRRLKEAAEDFLGKKVAGAVLSVPTWFSDEQTEALVKAAEAAGLPVLQLIPEPAAALLA 180

Query: 125 YGLDKN 130
           Y   + 
Sbjct: 181 YDAGEP 186

Saccharomyces cerevisiae Ssz1p (also known as /Pdr13p/YHR064C) belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Some family members are not chaperones but rather, function as NEFs for their Hsp70 partners, while other family members function as both chaperones and NEFs. Ssz1 does not function as a chaperone; it facilitates the interaction between the HSP70 Ssb protein and its partner J-domain protein Zuo1 (also known as zuotin) on the ribosome. Ssz1 is found in a stable heterodimer (called RAC, ribosome associated complex) with Zuo1. Zuo1 can only stimulate the ATPase activity of Ssb, when it is in complex with Ssz1. Ssz1 binds ATP but neither nucleotide-binding, hydrolysis, or its SBD, is needed for its in vivo function. Length = 386

>gnl|CDD|212688 cd11738, HSPA4L_NBD, Nucleotide-binding domain of HSPA4L

 Score = 70.4 bits (172), Expect = 2e-14
 Identities = 33/65 (50%), Positives = 47/65 (72%)

Query: 65  LLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALA 124
           LL K+KET+E  L   V D VI++P++F DA+R++   A  +AGLN +R++NE TA ALA
Sbjct: 120 LLAKLKETSENALKKPVADCVISIPSFFTDAERRSVMAAAQVAGLNCLRLMNETTAVALA 179

Query: 125 YGLDK 129
           YG+ K
Sbjct: 180 YGIYK 184

Human HSPA4L (also known as 70-kDa heat shock protein 4-like, APG-1, HSPH3, and OSP94; the human HSPA4L gene maps to 4q28) is expressed ubiquitously and predominantly in the testis. It is required for normal spermatogenesis and plays a role in osmotolerance. HSPA4L belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family. HSP105/110s are believed to function generally as co-chaperones of HSP70 chaperones, acting as nucleotide exchange factors (NEFs), to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is also regulated by J-domain proteins. Length = 383

>gnl|CDD|212682 cd11732, HSP105-110_like_NBD, Nucleotide-binding domain of 105/110 kDa heat shock proteins including HSPA4, HYOU1, and similar proteins

 Score = 65.4 bits (159), Expect = 1e-12
 Identities = 28/74 (37%), Positives = 42/74 (56%)

Query: 65  LLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALA 124
            + K+K+T +     ++ D  I VP ++ + QR    DA  IAGLN +RIVN+ TAA ++
Sbjct: 118 FIDKVKDTVKQDTKANITDVCIAVPPWYTEEQRYNIADAARIAGLNPVRIVNDVTAAGVS 177

Query: 125 YGLDKNLKGERNVK 138
           YG+ K    E   K
Sbjct: 178 YGIFKTDLPEGEEK 191

This subfamily include the human proteins, HSPA4 (also known as 70-kDa heat shock protein 4, APG-2, HS24/P52, hsp70 RY, and HSPH2; the human HSPA4 gene maps to 5q31.1), HSPA4L (also known as 70-kDa heat shock protein 4-like, APG-1, HSPH3, and OSP94; the human HSPA4L gene maps to 4q28), and HSPH1 (also known as heat shock 105kDa/110kDa protein 1, HSP105; HSP105A; HSP105B; NY-CO-25; the human HSPH1 gene maps to 13q12.3), HYOU1 (also known as human hypoxia up-regulated 1, GRP170; HSP12A; ORP150; GRP-170; ORP-150; the human HYOU1 gene maps to11q23.1-q23.3), Saccharomyces cerevisiae Sse1p, Sse2p, and Lhs1p, and a sea urchin sperm receptor. It belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family, and includes proteins believed to function generally as co-chaperones of HSP70 chaperones, acting as nucleotide exchange factors (NEFs), to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is also regulated by J-domain proteins. Length = 377

>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger

 Score = 60.0 bits (145), Expect = 1e-10
 Identities = 27/48 (56%), Positives = 34/48 (70%)

Query: 164 EEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
           E + E +++E+G +      GG+ E   EEEEEEEEEEEEEEEEEEEE
Sbjct: 840 ENQGEAKQDEKGVDGGGGSDGGDSEEEEEEEEEEEEEEEEEEEEEEEE 887

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 1096

>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger

 Score = 56.5 bits (136), Expect = 2e-09
 Identities = 33/54 (61%), Positives = 38/54 (70%), Gaps = 4/54 (7%)

Query: 162 KKEEEEEEEEEEEGGE--EEEEG--GGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
           K E  E+E   E  GE  ++E+G  GGG  +GG  EEEEEEEEEEEEEEEEEEE
Sbjct: 829 KDETGEQELNAENQGEAKQDEKGVDGGGGSDGGDSEEEEEEEEEEEEEEEEEEE 882

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 1096

>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional

 Score = 54.5 bits (132), Expect = 7e-09
 Identities = 48/158 (30%), Positives = 82/158 (51%), Gaps = 19/158 (12%)

Query: 58  HSPRLFQLLTKMKETAEAYLGHSVRDAVIT-VPAYFNDAQRQATKDAGAIAGLNVMRIV- 115
             P  ++LL+K KE  E       RD++   +    + ++R+  ++      L  + I+ 
Sbjct: 330 QPPSYWRLLSKTKEKRE------TRDSIAKKIAEKLHTSKRKVRREV-----LPFLSIIF 378

Query: 116 --NEPTAAALAYGLDKNLKGERNVKLPKMLEPLLVLTLRKKKKKKKKKKKEEEEEEEEEE 173
             N   AA LA  L+   +    +   K     +   + K +KK++++KKE++++    +
Sbjct: 379 KHNPELAARLAAFLELTEEEIEFLTGSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGK 438

Query: 174 EGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
           +  EEEEE    E+E   EE+EEEEEE EEE+EEEEE+
Sbjct: 439 KKEEEEEE----EKEKKEEEKEEEEEEAEEEKEEEEEK 472

Length = 482

>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger

 Score = 52.3 bits (125), Expect = 4e-08
 Identities = 30/72 (41%), Positives = 39/72 (54%), Gaps = 17/72 (23%)

Query: 157 KKKKKKKEEEEEEEEEEEGGEEEEE-----------------GGGGEEEGGGEEEEEEEE 199
           K + + + E + ++ E +    E+E                 GGGG + G  EEEEEEEE
Sbjct: 812 KDEHEGQSETQADDTEVKDETGEQELNAENQGEAKQDEKGVDGGGGSDGGDSEEEEEEEE 871

Query: 200 EEEEEEEEEEEE 211
           EEEEEEEEEEEE
Sbjct: 872 EEEEEEEEEEEE 883

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 1096

>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger

 Score = 46.1 bits (109), Expect = 5e-06
 Identities = 28/43 (65%), Positives = 29/43 (67%), Gaps = 12/43 (27%)

Query: 164 EEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEE 206
           + EEEEEEEEE  EEEEE          EEEEEEEEEEEE EE
Sbjct: 862 DSEEEEEEEEE--EEEEE----------EEEEEEEEEEEENEE 892

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 1096

>gnl|CDD|217927 pfam04147, Nop14, Nop14-like family

 Score = 45.4 bits (108), Expect = 9e-06
 Identities = 19/48 (39%), Positives = 32/48 (66%)

Query: 164 EEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
           EE+EEEEE+    E+EE+     EE   + +  +EEE+EE+E+ ++E+
Sbjct: 320 EEDEEEEEDGVDDEDEEDDDDDLEEEEEDVDLSDEEEDEEDEDSDDED 367

Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production. Length = 809

>gnl|CDD|217927 pfam04147, Nop14, Nop14-like family

 Score = 45.4 bits (108), Expect = 1e-05
 Identities = 18/49 (36%), Positives = 35/49 (71%)

Query: 163 KEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
           +EE+  ++E+EE  +++ E    + +   EEE+EE+E+ ++E++EEEEE
Sbjct: 325 EEEDGVDDEDEEDDDDDLEEEEEDVDLSDEEEDEEDEDSDDEDDEEEEE 373

Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production. Length = 809

>gnl|CDD|217927 pfam04147, Nop14, Nop14-like family

 Score = 45.4 bits (108), Expect = 1e-05
 Identities = 18/48 (37%), Positives = 33/48 (68%)

Query: 164 EEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
           E+  ++E+EE+  ++ EE     +    EE+EE+E+ ++E++EEEEEE
Sbjct: 327 EDGVDDEDEEDDDDDLEEEEEDVDLSDEEEDEEDEDSDDEDDEEEEEE 374

Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production. Length = 809

>gnl|CDD|218734 pfam05758, Ycf1, Ycf1

 Score = 44.6 bits (106), Expect = 1e-05
 Identities = 20/55 (36%), Positives = 29/55 (52%)

Query: 157 KKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
           KK K+  E EE EEE +   E   E  G ++E  G  EE+     EE+E+ ++ E
Sbjct: 224 KKLKETSETEEREEETDVEIETTSETKGTKQEQEGSTEEDPSLFSEEKEDPDKTE 278

The chloroplast genomes of most higher plants contain two giant open reading frames designated ycf1 and ycf2. Although the function of Ycf1 is unknown, it is known to be an essential gene. Length = 832

>gnl|CDD|212673 cd10231, YegD_like, Escherichia coli YegD, a putative chaperone protein, and related proteins

 Score = 44.4 bits (106), Expect = 2e-05
 Identities = 23/67 (34%), Positives = 29/67 (43%), Gaps = 7/67 (10%)

Query: 66  LTKMKETAEAYLGHSVRDAVITVPAYFNDAQ----RQATKDAGAI---AGLNVMRIVNEP 118
           L ++K+ AEA LG  +   VI  P +F         QA     A    AG   +    EP
Sbjct: 101 LAELKQRAEAALGAEIDRVVIGRPVHFVGDDEAADAQAEARLRAAARAAGFKDVEFQYEP 160

Query: 119 TAAALAY 125
            AAAL Y
Sbjct: 161 IAAALDY 167

This bacterial subfamily includes the uncharacterized Escherichia coli YegD. It belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. YegD lacks the SBD. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Some family members are not chaperones but instead, function as NEFs for their Hsp70 partners, other family members function as both chaperones and NEFs. Length = 415

>gnl|CDD|217829 pfam03985, Paf1, Paf1

 Score = 44.3 bits (105), Expect = 2e-05
 Identities = 17/50 (34%), Positives = 26/50 (52%)

Query: 162 KKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
           + +E+E+EEEE+   E EEE G   EE G +  E+   E   +   + E 
Sbjct: 369 EVDEDEDEEEEQRSDEHEEEEGEDSEEEGSQSREDGSSESSSDVGSDSES 418

Members of this family are components of the RNA polymerase II associated Paf1 complex. The Paf1 complex functions during the elongation phase of transcription in conjunction with Spt4-Spt5 and Spt16-Pob3i. Length = 431

>gnl|CDD|220759 pfam10446, DUF2457, Protein of unknown function (DUF2457)

 Score = 44.6 bits (105), Expect = 2e-05
 Identities = 18/65 (27%), Positives = 39/65 (60%)

Query: 145 PLLVLTLRKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEE 204
             L L    KK+   +K  +E EEE  EEE  +EE++    +E+   ++++++E++E+E+
Sbjct: 24  EKLTLNDTMKKENAIRKLGKEAEEEAMEEEDDDEEDDDDDDDEDEDDDDDDDDEDDEDED 83

Query: 205 EEEEE 209
           +++  
Sbjct: 84  DDDST 88

This is a family of uncharacterized proteins. Length = 449

>gnl|CDD|217927 pfam04147, Nop14, Nop14-like family

 Score = 43.4 bits (103), Expect = 4e-05
 Identities = 18/48 (37%), Positives = 33/48 (68%)

Query: 164 EEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
           E+EEEEE+  +  +EE++    EEE    +  +EEE+EE+E+ ++E++
Sbjct: 321 EDEEEEEDGVDDEDEEDDDDDLEEEEEDVDLSDEEEDEEDEDSDDEDD 368

Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production. Length = 809

>gnl|CDD|218734 pfam05758, Ycf1, Ycf1

 Score = 43.5 bits (103), Expect = 4e-05
 Identities = 19/56 (33%), Positives = 30/56 (53%)

Query: 156 KKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
           KK K+  + EE EEE + E     E  G  +E+ G  EE+     EE+E+ ++ E+
Sbjct: 224 KKLKETSETEEREEETDVEIETTSETKGTKQEQEGSTEEDPSLFSEEKEDPDKTED 279

The chloroplast genomes of most higher plants contain two giant open reading frames designated ycf1 and ycf2. Although the function of Ycf1 is unknown, it is known to be an essential gene. Length = 832

>gnl|CDD|240329 PTZ00248, PTZ00248, eukaryotic translation initiation factor 2 subunit 1; Provisional

 Score = 42.7 bits (101), Expect = 4e-05
 Identities = 21/46 (45%), Positives = 31/46 (67%)

Query: 163 KEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEE 208
            +EE+ EE  E+  EEEEE    E E   EE+E+EEEEE+++E ++
Sbjct: 274 GDEEDLEELLEKAEEEEEEDDYSESEDEDEEDEDEEEEEDDDEGDK 319

Length = 319

>gnl|CDD|221175 pfam11705, RNA_pol_3_Rpc31, DNA-directed RNA polymerase III subunit Rpc31

 Score = 42.4 bits (100), Expect = 4e-05
 Identities = 24/64 (37%), Positives = 39/64 (60%), Gaps = 5/64 (7%)

Query: 153 KKKKKKKKKKKEEEEEEEE-----EEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEE 207
            K K+K     EEEE+ +E     E++  E E E    E+E   EEEEEEEEE+E+ +++
Sbjct: 133 SKFKRKVGLFTEEEEDIDEKLSMLEKKLKELEAEDVDEEDEKDEEEEEEEEEEDEDFDDD 192

Query: 208 EEEE 211
           ++++
Sbjct: 193 DDDD 196

RNA polymerase III contains seventeen subunits in yeasts and in human cells. Twelve of these are akin to RNA polymerase I or II and the other five are RNA pol III-specific, and form the functionally distinct groups (i) Rpc31-Rpc34-Rpc82, and (ii) Rpc37-Rpc53. Rpc31, Rpc34 and Rpc82 form a cluster of enzyme-specific subunits that contribute to transcription initiation in S.cerevisiae and H.sapiens. There is evidence that these subunits are anchored at or near the N-terminal Zn-fold of Rpc1, itself prolonged by a highly conserved but RNA polymerase III-specific domain. Length = 221

>gnl|CDD|217927 pfam04147, Nop14, Nop14-like family

 Score = 43.1 bits (102), Expect = 6e-05
 Identities = 21/48 (43%), Positives = 36/48 (75%)

Query: 164 EEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
            ++E+EE++++  EEEEE     +E   EE+E+ ++E++EEEEEEE+E
Sbjct: 330 VDDEDEEDDDDDLEEEEEDVDLSDEEEDEEDEDSDDEDDEEEEEEEKE 377

Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production. Length = 809

>gnl|CDD|217927 pfam04147, Nop14, Nop14-like family

 Score = 43.1 bits (102), Expect = 6e-05
 Identities = 19/49 (38%), Positives = 33/49 (67%)

Query: 163 KEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
           + EE+EEEEE+   +E+EE    + E   E+ +  +EEE+EE+E+ ++E
Sbjct: 318 QGEEDEEEEEDGVDDEDEEDDDDDLEEEEEDVDLSDEEEDEEDEDSDDE 366

Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production. Length = 809

>gnl|CDD|218734 pfam05758, Ycf1, Ycf1

 Score = 42.7 bits (101), Expect = 7e-05
 Identities = 20/57 (35%), Positives = 31/57 (54%)

Query: 155 KKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
           KK K+  + EE EEE + E     E +G   E+EG  EE+     EE+E+ ++ E+ 
Sbjct: 224 KKLKETSETEEREEETDVEIETTSETKGTKQEQEGSTEEDPSLFSEEKEDPDKTEDL 280

The chloroplast genomes of most higher plants contain two giant open reading frames designated ycf1 and ycf2. Although the function of Ycf1 is unknown, it is known to be an essential gene. Length = 832

>gnl|CDD|221175 pfam11705, RNA_pol_3_Rpc31, DNA-directed RNA polymerase III subunit Rpc31

 Score = 42.0 bits (99), Expect = 7e-05
 Identities = 22/63 (34%), Positives = 39/63 (61%)

Query: 149 LTLRKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEE 208
           L L K K+K     +EEE+ +E+     ++ +E    + +   E++EEEEEEEEEE+E+ 
Sbjct: 130 LALSKFKRKVGLFTEEEEDIDEKLSMLEKKLKELEAEDVDEEDEKDEEEEEEEEEEDEDF 189

Query: 209 EEE 211
           +++
Sbjct: 190 DDD 192

RNA polymerase III contains seventeen subunits in yeasts and in human cells. Twelve of these are akin to RNA polymerase I or II and the other five are RNA pol III-specific, and form the functionally distinct groups (i) Rpc31-Rpc34-Rpc82, and (ii) Rpc37-Rpc53. Rpc31, Rpc34 and Rpc82 form a cluster of enzyme-specific subunits that contribute to transcription initiation in S.cerevisiae and H.sapiens. There is evidence that these subunits are anchored at or near the N-terminal Zn-fold of Rpc1, itself prolonged by a highly conserved but RNA polymerase III-specific domain. Length = 221

>gnl|CDD|217503 pfam03344, Daxx, Daxx Family

 Score = 42.6 bits (100), Expect = 8e-05
 Identities = 29/54 (53%), Positives = 33/54 (61%)

Query: 158 KKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
              ++ EEEE  EEEEE  EEEEE     EE  GE+EEEEEE E +   EEE E
Sbjct: 434 MASQESEEEESVEEEEEEEEEEEEEEQESEEEEGEDEEEEEEVEADNGSEEEME 487

The Daxx protein (also known as the Fas-binding protein) is thought to play a role in apoptosis, but precise role played by Daxx remains to be determined. Daxx forms a complex with Axin. Length = 715

>gnl|CDD|218333 pfam04931, DNA_pol_phi, DNA polymerase phi

 Score = 42.6 bits (100), Expect = 9e-05
 Identities = 21/66 (31%), Positives = 38/66 (57%), Gaps = 4/66 (6%)

Query: 146 LLVLTLRKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEE 205
           L VL   + K + ++  + EEE+E++ EE  ++E+E     E     E E E + E+ EE
Sbjct: 629 LDVLKADENKSRHQQLFEGEEEDEDDLEETDDDEDE----CEAIEDSESESESDGEDGEE 684

Query: 206 EEEEEE 211
           +E+E++
Sbjct: 685 DEQEDD 690

This family includes the fifth essential DNA polymerase in yeast EC:2.7.7.7. Pol5p is localised exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units. Length = 784

>gnl|CDD|219408 pfam07423, DUF1510, Protein of unknown function (DUF1510)

 Score = 41.3 bits (97), Expect = 1e-04
 Identities = 24/58 (41%), Positives = 35/58 (60%)

Query: 154 KKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
           KK   ++  + EE +EEE+E    E++E  G  E+   E EEE EEE+EE  +E E+E
Sbjct: 52  KKSDDQETAEIEEVKEEEKEAANSEDKEDKGDAEKEDEESEEENEEEDEESSDENEKE 109

This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown. Length = 214

>gnl|CDD|219408 pfam07423, DUF1510, Protein of unknown function (DUF1510)

 Score = 41.3 bits (97), Expect = 1e-04
 Identities = 24/59 (40%), Positives = 36/59 (61%)

Query: 153 KKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
           KK   ++  + EE +EEE+E    E++E+ G  E+E    EEE EEE+EE  +E E+E 
Sbjct: 52  KKSDDQETAEIEEVKEEEKEAANSEDKEDKGDAEKEDEESEEENEEEDEESSDENEKET 110

This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown. Length = 214

>gnl|CDD|237904 PRK15080, PRK15080, ethanolamine utilization protein EutJ; Provisional

 Score = 41.4 bits (98), Expect = 1e-04
 Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 16/73 (21%)

Query: 64  QLLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQAT--KDAGAI------AGLNVMRIV 115
            ++ ++K T E  LG  +  A   +P          T   D  AI      AGL V  ++
Sbjct: 71  TIVRRLKATLEEKLGRELTHAATAIPP--------GTSEGDPRAIINVVESAGLEVTHVL 122

Query: 116 NEPTAAALAYGLD 128
           +EPTAAA   G+D
Sbjct: 123 DEPTAAAAVLGID 135

Length = 267

>gnl|CDD|212671 cd10229, HSPA12_like_NBD, Nucleotide-binding domain of HSPA12A, HSPA12B and similar proteins

 Score = 41.5 bits (98), Expect = 1e-04
 Identities = 26/75 (34%), Positives = 35/75 (46%), Gaps = 16/75 (21%)

Query: 66  LTKMKETAEAYLGHSVRDA---------VITVPAYFNDAQRQATKDAGAIAGLNVMR--- 113
           L  + E A   L  +  +          V+TVPA ++DA +QA ++A   AGL   R   
Sbjct: 116 LRYLYEHALEELKKTYGNGEFTALDIEWVLTVPAIWSDAAKQAMREAAIKAGLVSSREGP 175

Query: 114 ----IVNEPTAAALA 124
               IV EP AAAL 
Sbjct: 176 DRLLIVLEPEAAALY 190

Human HSPA12A (also known as 70-kDa heat shock protein-12A) and HSPA12B (also known as 70-kDa heat shock protein-12B, chromosome 20 open reading frame 60/C20orf60, dJ1009E24.2) belong to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). No co-chaperones have yet been identified for HSPA12A or HSPA12B. The gene encoding HSPA12A maps to 10q26.12, a cytogenetic region that might represent a common susceptibility locus for both schizophrenia and bipolar affective disorder; reduced expression of HSPA12A has been shown in the prefrontal cortex of subjects with schizophrenia. HSPA12A is also a candidate gene for forelimb-girdle muscular anomaly, an autosomal recessive disorder of Japanese black cattle. HSPA12A is predominantly expressed in neuronal cells. It may also play a role in the atherosclerotic process. The gene encoding HSPA12B maps to 20p13. HSPA12B is predominantly expressed in endothelial cells, is required for angiogenesis, and may interact with known angiogenesis mediators. It may be important for host defense in microglia-mediated immune response. HSPA12B expression is up-regulated in lipopolysaccharide (LPS)-induced inflammatory response in the spinal cord, and mostly located in active microglia; this induced expression may be regulated by activation of MAPK-p38, ERK1/2 and SAPK/JNK signaling pathways. Overexpression of HSPA12B also protects against LPS-induced cardiac dysfunction and involves the preserved activation of the PI3K/Akt signaling pathway. Length = 404

>gnl|CDD|217927 pfam04147, Nop14, Nop14-like family

 Score = 41.5 bits (98), Expect = 2e-04
 Identities = 18/46 (39%), Positives = 34/46 (73%)

Query: 164 EEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEE 209
           E+EE+++++ E  EE+ +    EE+   E+ ++E++EEEEEEE+E+
Sbjct: 333 EDEEDDDDDLEEEEEDVDLSDEEEDEEDEDSDDEDDEEEEEEEKEK 378

Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production. Length = 809

>gnl|CDD|217927 pfam04147, Nop14, Nop14-like family

 Score = 41.1 bits (97), Expect = 2e-04
 Identities = 16/46 (34%), Positives = 33/46 (71%)

Query: 163 KEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEE 208
           ++EE+++++ EE  E+ +     E+E   + ++E++EEEEEEE+E+
Sbjct: 333 EDEEDDDDDLEEEEEDVDLSDEEEDEEDEDSDDEDDEEEEEEEKEK 378

Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production. Length = 809

>gnl|CDD|217503 pfam03344, Daxx, Daxx Family

 Score = 41.1 bits (96), Expect = 2e-04
 Identities = 29/54 (53%), Positives = 34/54 (62%)

Query: 157 KKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEE 210
              ++ +EEE  EEEEEE  EEEEE    EEE G +EEEEEE E +   EEE E
Sbjct: 434 MASQESEEEESVEEEEEEEEEEEEEEQESEEEEGEDEEEEEEVEADNGSEEEME 487

The Daxx protein (also known as the Fas-binding protein) is thought to play a role in apoptosis, but precise role played by Daxx remains to be determined. Daxx forms a complex with Axin. Length = 715

>gnl|CDD|148051 pfam06213, CobT, Cobalamin biosynthesis protein CobT

 Score = 41.0 bits (96), Expect = 2e-04
 Identities = 14/48 (29%), Positives = 26/48 (54%)

Query: 164 EEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
           + E+ E+E++   +E+++ G  EE G  +   E+ +   EE E  E E
Sbjct: 220 DSEDNEDEDDPKEDEDDDQGEEEESGSSDSLSEDSDASSEEMESGEME 267

This family consists of several bacterial cobalamin biosynthesis (CobT) proteins. CobT is involved in the transformation of precorrin-3 into cobyrinic acid. Length = 282

>gnl|CDD|212657 cd00012, NBD_sugar-kinase_HSP70_actin, Nucleotide-Binding Domain of the sugar kinase/HSP70/actin superfamily

 Score = 40.3 bits (94), Expect = 2e-04
 Identities = 22/91 (24%), Positives = 31/91 (34%), Gaps = 12/91 (13%)

Query: 57  HHSPRLFQLLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQAT----------KDAGAI 106
                L + L ++ + A   L   +    IT P       R+              A   
Sbjct: 38  TDLDELEEALRELLKEALRQLKSEIDAVGITEPGGVPKENREVIILPNLLLIPLALALED 97

Query: 107 AGLNVMRIVNEPTAAALAYGLDKNLKGERNV 137
            G   + +VN+  AAALA GL    K E  V
Sbjct: 98  LGGVPVAVVNDAVAAALAEGLF--GKEEDTV 126

This superfamily includes the actin family, the HSP70 family of molecular chaperones and nucleotide exchange factors, the ROK (repressor, ORF, kinase) family, the hexokinase family, the FGGY family (which includes glycerol kinase and similar carbohydrate kinases such as rhamnulokinase and xylulokinase), the exopolyphosphatase/guanosine pentaphosphate phosphohydrolase/nucleoside triphosphate diphosphohydrolase family, propionate kinase/acetate kinase family, glycerol dehydratase reactivase, 2-hydroxyglutaryl-CoA dehydratase component A, N-acetylglucosamine kinase, butyrate kinase 2, Escherichia coli YeaZ and similar glycoproteases, the cell shape-determining protein MreB, the plasmid DNA segregation factor ParM, cell cycle proteins FtsA, Pili assembly protein PilM, ethanolamine utilization protein EutJ, and similar proteins. The nucleotide-binding site residues are conserved; the nucleotide sits in a deep cleft formed between the two lobes of the nucleotide-binding domain (NBD). Substrate binding to superfamily members is associated with closure of this catalytic site cleft. The functional activities of several members of the superfamily, including hexokinases, actin, and HSP70s, are modulated by allosteric effectors, which may act on the cleft closure. Length = 185

>gnl|CDD|220102 pfam09073, BUD22, BUD22

 Score = 41.0 bits (96), Expect = 2e-04
 Identities = 22/62 (35%), Positives = 37/62 (59%), Gaps = 4/62 (6%)

Query: 150 TLRKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEE 209
             + K KKK KK K++E +E  +++  EE E     E+E   EE  E++ ++EEEE+ + 
Sbjct: 146 AKKGKAKKKTKKSKKKEAKESSDKDDEEESE----SEDESKSEESAEDDSDDEEEEDSDS 201

Query: 210 EE 211
           E+
Sbjct: 202 ED 203

BUD22 has been shown in yeast to be a nuclear protein involved in bud-site selection. It plays a role in positioning the proximal bud pole signal. More recently it has been shown to be involved in ribosome biogenesis. Length = 424

>gnl|CDD|221175 pfam11705, RNA_pol_3_Rpc31, DNA-directed RNA polymerase III subunit Rpc31

 Score = 40.1 bits (94), Expect = 3e-04
 Identities = 20/56 (35%), Positives = 35/56 (62%), Gaps = 10/56 (17%)

Query: 154 KKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEE 209
           K    +KK KE E E+ +EE+  +EEEE          EEEEEE+E+ ++++++++
Sbjct: 152 KLSMLEKKLKELEAEDVDEEDEKDEEEE----------EEEEEEDEDFDDDDDDDD 197

RNA polymerase III contains seventeen subunits in yeasts and in human cells. Twelve of these are akin to RNA polymerase I or II and the other five are RNA pol III-specific, and form the functionally distinct groups (i) Rpc31-Rpc34-Rpc82, and (ii) Rpc37-Rpc53. Rpc31, Rpc34 and Rpc82 form a cluster of enzyme-specific subunits that contribute to transcription initiation in S.cerevisiae and H.sapiens. There is evidence that these subunits are anchored at or near the N-terminal Zn-fold of Rpc1, itself prolonged by a highly conserved but RNA polymerase III-specific domain. Length = 221

>gnl|CDD|185603 PTZ00415, PTZ00415, transmission-blocking target antigen s230; Provisional

 Score = 40.8 bits (95), Expect = 3e-04
 Identities = 17/47 (36%), Positives = 32/47 (68%)

Query: 165 EEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
           ++E+E+E+++  E++EE    EEE  G ++E+EE+E  E+   E+ E
Sbjct: 156 DDEDEDEDDDDEEDDEEEEEEEEEIKGFDDEDEEDEGGEDFTYEKSE 202

Length = 2849

>gnl|CDD|218538 pfam05285, SDA1, SDA1

 Score = 40.4 bits (95), Expect = 3e-04
 Identities = 18/56 (32%), Positives = 35/56 (62%)

Query: 156 KKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
           +KKK+ ++  E +++++EE   E EE    ++EG   + E ++E E  + E+EEE+
Sbjct: 83  RKKKEAEQGLESDDDDDEEEEWEVEEDEDSDDEGEWIDVESDKEIESSDSEDEEEK 138

This family consists of several SDA1 protein homologues. SDA1 is a Saccharomyces cerevisiae protein which is involved in the control of the actin cytoskeleton. The protein is essential for cell viability and is localised in the nucleus. Length = 317

>gnl|CDD|217927 pfam04147, Nop14, Nop14-like family

 Score = 40.4 bits (95), Expect = 4e-04
 Identities = 19/47 (40%), Positives = 35/47 (74%)

Query: 164 EEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEE 210
           +E+EE+++++   EEE+     EEE   +E+ ++E++EEEEEEE+E+
Sbjct: 332 DEDEEDDDDDLEEEEEDVDLSDEEEDEEDEDSDDEDDEEEEEEEKEK 378

Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production. Length = 809

>gnl|CDD|221175 pfam11705, RNA_pol_3_Rpc31, DNA-directed RNA polymerase III subunit Rpc31

 Score = 39.7 bits (93), Expect = 4e-04
 Identities = 20/56 (35%), Positives = 35/56 (62%), Gaps = 10/56 (17%)

Query: 153 KKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEE 208
           K    +KK K+ E E+ +EE+E  EEEEE          EEEEE+E+ ++++++++
Sbjct: 152 KLSMLEKKLKELEAEDVDEEDEKDEEEEE----------EEEEEDEDFDDDDDDDD 197

RNA polymerase III contains seventeen subunits in yeasts and in human cells. Twelve of these are akin to RNA polymerase I or II and the other five are RNA pol III-specific, and form the functionally distinct groups (i) Rpc31-Rpc34-Rpc82, and (ii) Rpc37-Rpc53. Rpc31, Rpc34 and Rpc82 form a cluster of enzyme-specific subunits that contribute to transcription initiation in S.cerevisiae and H.sapiens. There is evidence that these subunits are anchored at or near the N-terminal Zn-fold of Rpc1, itself prolonged by a highly conserved but RNA polymerase III-specific domain. Length = 221

>gnl|CDD|237063 PRK12329, nusA, transcription elongation factor NusA; Provisional

 Score = 40.2 bits (94), Expect = 4e-04
 Identities = 18/50 (36%), Positives = 26/50 (52%)

Query: 162 KKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
           ++EEEE  + E E   E E+    EE+    E     E+E E+E+E EE 
Sbjct: 391 QREEEEALQREAEERLEAEQAERAEEDARLRELYPLPEDEFEDEDELEEA 440

Length = 449

>gnl|CDD|237063 PRK12329, nusA, transcription elongation factor NusA; Provisional

 Score = 39.8 bits (93), Expect = 6e-04
 Identities = 20/48 (41%), Positives = 26/48 (54%)

Query: 164 EEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
            E EE  E E+    EE+    E     E+E E+E+E EE + EEEEE
Sbjct: 400 REAEERLEAEQAERAEEDARLRELYPLPEDEFEDEDELEEAQPEEEEE 447

Length = 449

>gnl|CDD|226920 COG4547, CobT, Cobalamin biosynthesis protein CobT (nicotinate-mononucleotide:5, 6-dimethylbenzimidazole phosphoribosyltransferase) [Coenzyme metabolism]

 Score = 39.8 bits (93), Expect = 6e-04
 Identities = 17/48 (35%), Positives = 27/48 (56%)

Query: 164 EEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
            +EE+ ++++    E+ E G  E EG  E EE+E E  + E EE E +
Sbjct: 231 ADEEDGDDDQPDNNEDSEAGREESEGSDESEEDEAEATDGEGEEGEMD 278

Length = 620

>gnl|CDD|226894 COG4499, COG4499, Predicted membrane protein [Function unknown]

 Score = 39.8 bits (93), Expect = 6e-04
 Identities = 23/110 (20%), Positives = 52/110 (47%), Gaps = 17/110 (15%)

Query: 109 LNVMRIVNEPTAAALAYG-------LDKNLKGERNVKLPKMLEPLLVLTLRKKKKKKKKK 161
           +N+ R +++     LA          + +L G++  +L K     L    +K  + K + 
Sbjct: 333 INIARNLDDNDLTLLALTKLYEEVKSNTDLSGDKRQELLKEYNKKLQDYTKKLGEVKDET 392

Query: 162 KKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
              EE E + +EE  ++EE           E++++E+ +E++E+ +++E 
Sbjct: 393 DASEEAEAKAKEEKLKQEEN----------EKKQKEQADEDKEKRQKDER 432

Length = 434

>gnl|CDD|185603 PTZ00415, PTZ00415, transmission-blocking target antigen s230; Provisional

 Score = 40.0 bits (93), Expect = 7e-04
 Identities = 15/39 (38%), Positives = 25/39 (64%)

Query: 171 EEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEE 209
            EE+    +      ++E   E++++EE++EEEEEEEEE
Sbjct: 141 AEEDMSPRDNFVIDDDDEDEDEDDDDEEDDEEEEEEEEE 179

Length = 2849

>gnl|CDD|218538 pfam05285, SDA1, SDA1

 Score = 39.3 bits (92), Expect = 7e-04
 Identities = 18/63 (28%), Positives = 37/63 (58%)

Query: 149 LTLRKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEE 208
           L  + K++++KKK+ E+  E +++++  EE E     + +  GE  + E ++E E  + E
Sbjct: 74  LLEKWKEEERKKKEAEQGLESDDDDDEEEEWEVEEDEDSDDEGEWIDVESDKEIESSDSE 133

Query: 209 EEE 211
           +EE
Sbjct: 134 DEE 136

This family consists of several SDA1 protein homologues. SDA1 is a Saccharomyces cerevisiae protein which is involved in the control of the actin cytoskeleton. The protein is essential for cell viability and is localised in the nucleus. Length = 317

>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger

 Score = 39.6 bits (92), Expect = 8e-04
 Identities = 23/59 (38%), Positives = 31/59 (52%), Gaps = 5/59 (8%)

Query: 157 KKKKKKKEEEEEEEEEEEGGEEEEEG-----GGGEEEGGGEEEEEEEEEEEEEEEEEEE 210
           +  ++   E E+E E E  GE E EG       GE+EG GE E +E + + E E EE E
Sbjct: 658 ENGEESGGEAEQEGETETKGENESEGEIPAERKGEQEGEGEIEAKEADHKGETEAEEVE 716

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 1096

>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger

 Score = 39.6 bits (92), Expect = 8e-04
 Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 4/59 (6%)

Query: 156 KKKKKKKKEEEEEEEEEEEGGEEEEEG----GGGEEEGGGEEEEEEEEEEEEEEEEEEE 210
           ++K +++ E E E +E +  GE E E     G  E EG  +E E E  EE EE E+E E
Sbjct: 688 ERKGEQEGEGEIEAKEADHKGETEAEEVEHEGETEAEGTEDEGEIETGEEGEEVEDEGE 746

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 1096

>gnl|CDD|217503 pfam03344, Daxx, Daxx Family

 Score = 39.5 bits (92), Expect = 8e-04
 Identities = 21/56 (37%), Positives = 32/56 (57%)

Query: 155 KKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEE 210
           ++ ++++ ++EEEEEE E + G EEE  G  E +G GEE EE+ E    E      
Sbjct: 460 QESEEEEGEDEEEEEEVEADNGSEEEMEGSSEGDGDGEEPEEDAERRNSEMAGISR 515

The Daxx protein (also known as the Fas-binding protein) is thought to play a role in apoptosis, but precise role played by Daxx remains to be determined. Daxx forms a complex with Axin. Length = 715

>gnl|CDD|130712 TIGR01651, CobT, cobaltochelatase, CobT subunit

 Score = 39.5 bits (92), Expect = 8e-04
 Identities = 18/48 (37%), Positives = 27/48 (56%)

Query: 164 EEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
           E+EE+ ++++    E+EE G GE EG      +E E  + E E  EEE
Sbjct: 210 EDEEDGDDDQPTENEQEEQGEGEGEGQEGSAPQESEATDRESESGEEE 257

This model describes Pseudomonas denitrificans CobT gene product, which is a cobalt chelatase subunit that functions in cobalamin biosynthesis. Cobalamin (vitamin B12) can be synthesized via several pathways, including an aerobic pathway (found in Pseudomonas denitrificans) and an anaerobic pathway (found in P. shermanii and Salmonella typhimurium). These pathways differ in the point of cobalt insertion during corrin ring formation. There are apparently a number of variations on these two pathways, where the major differences seem to be concerned with the process of ring contraction. Confusion regarding the functions of enzymes found in the aerobic vs. anaerobic pathways has arisen because nonhomologous genes in these different pathways were given the same gene symbols. Thus, cobT in the aerobic pathway (P. denitrificans) is not a homolog of cobT in the anaerobic pathway (S. typhimurium). It should be noted that E. coli synthesizes cobalamin only when it is supplied with the precursor cobinamide, which is a complex intermediate. Additionally, all E. coli cobalamin synthesis genes (cobU, cobS and cobT) were named after their Salmonella typhimurium homologs which function in the anaerobic cobalamin synthesis pathway. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobT gene product, which is a cobalt chelatase subunit, with a MW ~70 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobS (TIGR01650) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobT gene product, the P. denitrificans gene symbol is not used in the name of this model [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]. Length = 600

>gnl|CDD|223003 PHA03169, PHA03169, hypothetical protein; Provisional

 Score = 39.2 bits (91), Expect = 9e-04
 Identities = 15/51 (29%), Positives = 19/51 (37%)

Query: 161 KKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
           ++ E + E  EE   GE+EE G GG    G E             EE    
Sbjct: 67  RQTESDTETAEESRHGEKEERGQGGPSGSGSESVGSPTPSPSGSAEELASG 117

Length = 413

>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger

 Score = 39.2 bits (91), Expect = 0.001
 Identities = 27/88 (30%), Positives = 34/88 (38%), Gaps = 29/88 (32%)

Query: 153 KKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEE----------------- 195
           K  +  + K + E E E  E++  E + E    + E   E  E                 
Sbjct: 792 KGDEGAEGKVEHEGETEAGEKDEHEGQSETQADDTEVKDETGEQELNAENQGEAKQDEKG 851

Query: 196 ------------EEEEEEEEEEEEEEEE 211
                       EEEEEEEEEEEEEEEE
Sbjct: 852 VDGGGGSDGGDSEEEEEEEEEEEEEEEE 879

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 1096

>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger

 Score = 38.8 bits (90), Expect = 0.001
 Identities = 24/57 (42%), Positives = 28/57 (49%), Gaps = 2/57 (3%)

Query: 157 KKKKKKKEEEEEEEEEEEGGEEE--EEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
           K+   K E E EE E E   E E  E+ G  E    GEE E+E E E E + E E E
Sbjct: 702 KEADHKGETEAEEVEHEGETEAEGTEDEGEIETGEEGEEVEDEGEGEAEGKHEVETE 758

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 1096

>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger

 Score = 38.8 bits (90), Expect = 0.001
 Identities = 23/48 (47%), Positives = 27/48 (56%)

Query: 164 EEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
            E+E E E  E GEE E+ G GE EG  E E E + +E E E E E E
Sbjct: 726 TEDEGEIETGEEGEEVEDEGEGEAEGKHEVETEGDRKETEHEGETEAE 773

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 1096

>gnl|CDD|217503 pfam03344, Daxx, Daxx Family

 Score = 39.1 bits (91), Expect = 0.001
 Identities = 21/54 (38%), Positives = 32/54 (59%)

Query: 158 KKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
           ++++++ EEEE E+EEE  E E + G  EE  G  E + + EE EE+ E    E
Sbjct: 456 EEEEQESEEEEGEDEEEEEEVEADNGSEEEMEGSSEGDGDGEEPEEDAERRNSE 509

The Daxx protein (also known as the Fas-binding protein) is thought to play a role in apoptosis, but precise role played by Daxx remains to be determined. Daxx forms a complex with Axin. Length = 715

>gnl|CDD|237063 PRK12329, nusA, transcription elongation factor NusA; Provisional

 Score = 38.6 bits (90), Expect = 0.001
 Identities = 20/48 (41%), Positives = 25/48 (52%)

Query: 164 EEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
           + E EE  E E  E  EE     E     E+E E+E+E EE + EEEE
Sbjct: 399 QREAEERLEAEQAERAEEDARLRELYPLPEDEFEDEDELEEAQPEEEE 446

Length = 449

>gnl|CDD|222571 pfam14153, Spore_coat_CotO, Spore coat protein CotO

 Score = 38.3 bits (89), Expect = 0.001
 Identities = 28/70 (40%), Positives = 43/70 (61%), Gaps = 8/70 (11%)

Query: 150 TLRKKKKKKKKKKKE--------EEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEE 201
           T   KK  +K+++KE        +EEE++ E E  E+E+E G  E E   E++E+EE  +
Sbjct: 30  TFIIKKADEKEEEKENSDEHVKSKEEEQKIEYEEAEKEKEAGEPEREDIAEQQEKEEIAQ 89

Query: 202 EEEEEEEEEE 211
           EEE+EEE E+
Sbjct: 90  EEEKEEEAED 99

Bacillus spores are protected by a protein shell consisting of over 50 different polypeptides, known as the coat. This family of proteins has an important morphogenetic role in coat assembly, it is involved in the assembly of at least 5 different coat proteins including CotB, CotG, CotS, CotSA and CotW. It is likely to act at a late stage of coat assembly. Length = 185

>gnl|CDD|220972 pfam11081, DUF2890, Protein of unknown function (DUF2890)

 Score = 38.4 bits (89), Expect = 0.001
 Identities = 20/56 (35%), Positives = 29/56 (51%)

Query: 152 RKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEE 207
           +   KK K +    ++EEE+ +   EE EE     E+     +EE+EE EE EEE 
Sbjct: 4   KGNAKKLKVRPPPTKDEEEDWDSQAEEVEEDEEEMEDWEDSLDEEDEEAEEVEEET 59

This family is conserved in dsDNA adenoviruses of vertebrates. The function is not known. Length = 172

>gnl|CDD|220972 pfam11081, DUF2890, Protein of unknown function (DUF2890)

 Score = 37.6 bits (87), Expect = 0.001
 Identities = 22/58 (37%), Positives = 29/58 (50%)

Query: 153 KKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEE 210
             K   KK K      ++EEE+   + EE    EEE    E+  +EE+EE EE EEE 
Sbjct: 2   PPKGNAKKLKVRPPPTKDEEEDWDSQAEEVEEDEEEMEDWEDSLDEEDEEAEEVEEET 59

This family is conserved in dsDNA adenoviruses of vertebrates. The function is not known. Length = 172

>gnl|CDD|219900 pfam08553, VID27, VID27 cytoplasmic protein

 Score = 39.0 bits (91), Expect = 0.001
 Identities = 19/55 (34%), Positives = 30/55 (54%)

Query: 156 KKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEE 210
           K+K  K KE E++   +     E E+     ++   E+EEEEEEE+E+E   +E 
Sbjct: 358 KQKWTKAKETEQDYILDAFSALEIEDANTERDDEEEEDEEEEEEEDEDEGPSKEH 412

This is a family of fungal and plant proteins and contains many hypothetical proteins. VID27 is a cytoplasmic protein that plays a potential role in vacuolar protein degradation. Length = 794

>gnl|CDD|224188 COG1269, NtpI, Archaeal/vacuolar-type H+-ATPase subunit I [Energy production and conversion]

 Score = 38.9 bits (91), Expect = 0.001
 Identities = 26/102 (25%), Positives = 43/102 (42%), Gaps = 2/102 (1%)

Query: 108 GLNVMRIVNEPTAAALAYGLDKNLKGERNVKLPKM--LEPLLVLTLRKKKKKKKKKKKEE 165
           G   ++ + +   A +A     +L  E    L  +  LE  L +   + +K + + K  E
Sbjct: 39  GEKGLKELEKLKVAEVAQISLSSLLSEVLDYLRSVKGLEGRLFILPEEVEKLEAELKSLE 98

Query: 166 EEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEE 207
           E  +  E+   E EE     EE     +EE E+ E+  EE E
Sbjct: 99  EVIKPAEKFSSEVEELTRKLEERLSELDEELEDLEDLLEELE 140

Length = 660

>gnl|CDD|216652 pfam01698, FLO_LFY, Floricaula / Leafy protein

 Score = 38.8 bits (91), Expect = 0.001
 Identities = 16/45 (35%), Positives = 33/45 (73%), Gaps = 2/45 (4%)

Query: 152 RKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEE 196
           +KK++KK+++K+ +E  E+++++  E+++  GGG  EGG E + E
Sbjct: 183 KKKQRKKQRRKRSKELREDDDDDEDEDDDGEGGG--EGGEERQRE 225

This family consists of various plant development proteins which are homologues of floricaula (FLO) and Leafy (LFY) proteins which are floral meristem identity proteins. Mutations in the sequences of these proteins affect flower and leaf development. Length = 382

>gnl|CDD|217049 pfam02459, Adeno_terminal, Adenoviral DNA terminal protein

 Score = 38.9 bits (91), Expect = 0.001
 Identities = 22/44 (50%), Positives = 22/44 (50%), Gaps = 10/44 (22%)

Query: 166 EEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEE 209
               E EEE  EEEE            EEEEEEEEEEE   EEE
Sbjct: 300 PSPPEPEEEEEEEEEV----------PEEEEEEEEEEERTFEEE 333

This protein is covalently attached to the terminii of replicating DNA in vivo. Length = 548

>gnl|CDD|217049 pfam02459, Adeno_terminal, Adenoviral DNA terminal protein

 Score = 38.5 bits (90), Expect = 0.001
 Identities = 22/44 (50%), Positives = 22/44 (50%), Gaps = 10/44 (22%)

Query: 165 EEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEE 208
               E EEEE  EEE            EEEEEEEEEEE   EEE
Sbjct: 300 PSPPEPEEEEEEEEEVP----------EEEEEEEEEEERTFEEE 333

This protein is covalently attached to the terminii of replicating DNA in vivo. Length = 548

>gnl|CDD|217476 pfam03286, Pox_Ag35, Pox virus Ag35 surface protein

 Score = 37.8 bits (88), Expect = 0.001
 Identities = 18/58 (31%), Positives = 29/58 (50%)

Query: 153 KKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEE 210
           KK KKK K+K  EEE++ E ++   EE E      E  G+ +E        + + E++
Sbjct: 66  KKSKKKDKEKLTEEEKKPESDDDKTEENENDPDNNEESGDSQESASANSLSDIDNEDD 123

Length = 198

>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger

 Score = 38.8 bits (90), Expect = 0.002
 Identities = 23/46 (50%), Positives = 28/46 (60%), Gaps = 17/46 (36%)

Query: 159 KKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEE 204
           +++++EEEEEEEEEEE                 EEEEEEEEEE EE
Sbjct: 864 EEEEEEEEEEEEEEEE-----------------EEEEEEEEEENEE 892

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 1096

>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger

 Score = 38.4 bits (89), Expect = 0.002
 Identities = 20/53 (37%), Positives = 26/53 (49%)

Query: 159 KKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
             ++  EE E   E EG   EE GG  E+EG  E + E E E E   E + E+
Sbjct: 641 TGERTGEEGERPTEAEGENGEESGGEAEQEGETETKGENESEGEIPAERKGEQ 693

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 1096

>gnl|CDD|217927 pfam04147, Nop14, Nop14-like family

 Score = 38.1 bits (89), Expect = 0.002
 Identities = 20/71 (28%), Positives = 44/71 (61%), Gaps = 10/71 (14%)

Query: 151 LRKKKKKKKKKKKEEEEEEEEEEE----------GGEEEEEGGGGEEEGGGEEEEEEEEE 200
           L+K + ++ ++ + EEE++EEEE+            E +++   G  +G  +EEEEE+  
Sbjct: 271 LKKLEAERLRRMRGEEEDDEEEEDSKESADDLDDEFEPDDDDNFGLGQGEEDEEEEEDGV 330

Query: 201 EEEEEEEEEEE 211
           ++E+EE+++++
Sbjct: 331 DDEDEEDDDDD 341

Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production. Length = 809

>gnl|CDD|218734 pfam05758, Ycf1, Ycf1

 Score = 38.1 bits (89), Expect = 0.002
 Identities = 16/72 (22%), Positives = 37/72 (51%)

Query: 139 LPKMLEPLLVLTLRKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEE 198
             K L+       R+++   + +   E +  ++E+EG  EE+     EE+   ++ E+ +
Sbjct: 222 FTKKLKETSETEEREEETDVEIETTSETKGTKQEQEGSTEEDPSLFSEEKEDPDKTEDLD 281

Query: 199 EEEEEEEEEEEE 210
           + E  +E+++EE
Sbjct: 282 KLEILKEKKDEE 293

The chloroplast genomes of most higher plants contain two giant open reading frames designated ycf1 and ycf2. Although the function of Ycf1 is unknown, it is known to be an essential gene. Length = 832

>gnl|CDD|217829 pfam03985, Paf1, Paf1

 Score = 37.8 bits (88), Expect = 0.002
 Identities = 14/53 (26%), Positives = 24/53 (45%)

Query: 159 KKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
           +  + E+EEEE+  +E  EEE E    E     E+   E   +   + E + +
Sbjct: 369 EVDEDEDEEEEQRSDEHEEEEGEDSEEEGSQSREDGSSESSSDVGSDSESKAD 421

Members of this family are components of the RNA polymerase II associated Paf1 complex. The Paf1 complex functions during the elongation phase of transcription in conjunction with Spt4-Spt5 and Spt16-Pob3i. Length = 431

>gnl|CDD|148051 pfam06213, CobT, Cobalamin biosynthesis protein CobT

 Score = 37.9 bits (88), Expect = 0.002
 Identities = 15/52 (28%), Positives = 28/52 (53%)

Query: 160 KKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
           + +  + E+ E+E++  E+E++  G EEE G  +   E+ +   EE E  E 
Sbjct: 215 EPESADSEDNEDEDDPKEDEDDDQGEEEESGSSDSLSEDSDASSEEMESGEM 266

This family consists of several bacterial cobalamin biosynthesis (CobT) proteins. CobT is involved in the transformation of precorrin-3 into cobyrinic acid. Length = 282

>gnl|CDD|226920 COG4547, CobT, Cobalamin biosynthesis protein CobT (nicotinate-mononucleotide:5, 6-dimethylbenzimidazole phosphoribosyltransferase) [Coenzyme metabolism]

 Score = 38.3 bits (89), Expect = 0.002
 Identities = 16/48 (33%), Positives = 28/48 (58%)

Query: 164 EEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
           ++  EE+ +EE G++++     + E G EE E  +E EE+E E  + E
Sbjct: 224 DDGIEEDADEEDGDDDQPDNNEDSEAGREESEGSDESEEDEAEATDGE 271

Length = 620

>gnl|CDD|223003 PHA03169, PHA03169, hypothetical protein; Provisional

 Score = 38.4 bits (89), Expect = 0.002
 Identities = 7/48 (14%), Positives = 7/48 (14%)

Query: 164 EEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
            E          G  EE   G   E       E               
Sbjct: 97  SESVGSPTPSPSGSAEELASGLSPENTSGSSPESPASHSPPPSPPSHP 144

Length = 413

>gnl|CDD|220972 pfam11081, DUF2890, Protein of unknown function (DUF2890)

 Score = 37.2 bits (86), Expect = 0.002
 Identities = 20/58 (34%), Positives = 29/58 (50%)

Query: 154 KKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
             K   KK K      ++EEE  + + E    +EE   + E+  +EE+EE EE EEE 
Sbjct: 2   PPKGNAKKLKVRPPPTKDEEEDWDSQAEEVEEDEEEMEDWEDSLDEEDEEAEEVEEET 59

This family is conserved in dsDNA adenoviruses of vertebrates. The function is not known. Length = 172

>gnl|CDD|179712 PRK04019, rplP0, acidic ribosomal protein P0; Validated

 Score = 37.5 bits (88), Expect = 0.002
 Identities = 20/41 (48%), Positives = 26/41 (63%)

Query: 171 EEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
           +++   EE +E    + +    EEEEEEEEEEEEEE  EEE
Sbjct: 280 DKDALDEELKEVLSAQAQAAAAEEEEEEEEEEEEEEPSEEE 320

Length = 330

>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger

 Score = 37.7 bits (87), Expect = 0.003
 Identities = 18/54 (33%), Positives = 26/54 (48%)

Query: 158 KKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
           +  ++   E E+E E E   E E  G    E  GE+E E E E +E + + E E
Sbjct: 658 ENGEESGGEAEQEGETETKGENESEGEIPAERKGEQEGEGEIEAKEADHKGETE 711

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 1096

>gnl|CDD|217829 pfam03985, Paf1, Paf1

 Score = 37.8 bits (88), Expect = 0.003
 Identities = 16/48 (33%), Positives = 25/48 (52%)

Query: 164 EEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
           E+  +E EEEEG + EEEG    E+G  E   +   + E + ++E   
Sbjct: 379 EQRSDEHEEEEGEDSEEEGSQSREDGSSESSSDVGSDSESKADKESAS 426

Members of this family are components of the RNA polymerase II associated Paf1 complex. The Paf1 complex functions during the elongation phase of transcription in conjunction with Spt4-Spt5 and Spt16-Pob3i. Length = 431

>gnl|CDD|217503 pfam03344, Daxx, Daxx Family

 Score = 38.0 bits (88), Expect = 0.003
 Identities = 24/60 (40%), Positives = 29/60 (48%)

Query: 152 RKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
           +    +     K      E      +E EE    EEE   EEEEEEEE+E EEEE E+EE
Sbjct: 412 QGTSSRSSDPSKASSTSGESPSMASQESEEEESVEEEEEEEEEEEEEEQESEEEEGEDEE 471

The Daxx protein (also known as the Fas-binding protein) is thought to play a role in apoptosis, but precise role played by Daxx remains to be determined. Daxx forms a complex with Axin. Length = 715

>gnl|CDD|148051 pfam06213, CobT, Cobalamin biosynthesis protein CobT

 Score = 37.5 bits (87), Expect = 0.003
 Identities = 11/47 (23%), Positives = 23/47 (48%)

Query: 165 EEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
           +E E  + E+  +E++     +++ G EEE    +   E+ +   EE
Sbjct: 214 DEPESADSEDNEDEDDPKEDEDDDQGEEEESGSSDSLSEDSDASSEE 260

This family consists of several bacterial cobalamin biosynthesis (CobT) proteins. CobT is involved in the transformation of precorrin-3 into cobyrinic acid. Length = 282

>gnl|CDD|226920 COG4547, CobT, Cobalamin biosynthesis protein CobT (nicotinate-mononucleotide:5, 6-dimethylbenzimidazole phosphoribosyltransferase) [Coenzyme metabolism]

 Score = 37.5 bits (87), Expect = 0.003
 Identities = 15/48 (31%), Positives = 26/48 (54%)

Query: 164 EEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
           +  EE+ +EE+G +++ +     E G  E E  +E EE+E E  + E 
Sbjct: 225 DGIEEDADEEDGDDDQPDNNEDSEAGREESEGSDESEEDEAEATDGEG 272

Length = 620

>gnl|CDD|226920 COG4547, CobT, Cobalamin biosynthesis protein CobT (nicotinate-mononucleotide:5, 6-dimethylbenzimidazole phosphoribosyltransferase) [Coenzyme metabolism]

 Score = 37.5 bits (87), Expect = 0.003
 Identities = 17/49 (34%), Positives = 29/49 (59%)

Query: 163 KEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
           +E+ +EE+ +++  +  E+   G EE  G +E EE+E E  + E EE E
Sbjct: 228 EEDADEEDGDDDQPDNNEDSEAGREESEGSDESEEDEAEATDGEGEEGE 276

Length = 620

>gnl|CDD|217049 pfam02459, Adeno_terminal, Adenoviral DNA terminal protein

 Score = 37.7 bits (88), Expect = 0.003
 Identities = 22/44 (50%), Positives = 22/44 (50%), Gaps = 10/44 (22%)

Query: 164 EEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEE 207
               E EEEEE  EE  E          EEEEEEEEEE   EEE
Sbjct: 300 PSPPEPEEEEEEEEEVPE----------EEEEEEEEEERTFEEE 333

This protein is covalently attached to the terminii of replicating DNA in vivo. Length = 548

>gnl|CDD|215601 PLN03142, PLN03142, Probable chromatin-remodeling complex ATPase chain; Provisional

 Score = 37.9 bits (88), Expect = 0.003
 Identities = 16/48 (33%), Positives = 26/48 (54%)

Query: 164 EEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
           EE+   +  EE  EEE E          +++E   E+E+E+EE++EE 
Sbjct: 2   EEQVNTQANEEEDEEELEAVARSAGSDSDDDEVPAEDEDEDEEDDEEA 49

Length = 1033

>gnl|CDD|221641 pfam12569, NARP1, NMDA receptor-regulated protein 1

 Score = 37.6 bits (88), Expect = 0.003
 Identities = 12/50 (24%), Positives = 30/50 (60%)

Query: 153 KKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEE 202
           ++KK +KK++K E++ E+EE E    +++     ++  G + E ++ + +
Sbjct: 410 ERKKLRKKQRKAEKKAEKEEAEKAAAKKKAEAAAKKAKGPDGETKKVDPD 459

This domain family is found in eukaryotes, and is approximately 40 amino acids in length. The family is found in association with pfam07719, pfam00515. There is a single completely conserved residue L that may be functionally important. NARP1 is the mammalian homologue of a yeast N-terminal acetyltransferase that regulates entry into the G(0) phase of the cell cycle. Length = 516

>gnl|CDD|185603 PTZ00415, PTZ00415, transmission-blocking target antigen s230; Provisional

 Score = 37.7 bits (87), Expect = 0.004
 Identities = 12/35 (34%), Positives = 23/35 (65%)

Query: 177 EEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
            EE+           ++E+E+E++++EE++EEEEE
Sbjct: 141 AEEDMSPRDNFVIDDDDEDEDEDDDDEEDDEEEEE 175

Length = 2849

>gnl|CDD|185603 PTZ00415, PTZ00415, transmission-blocking target antigen s230; Provisional

 Score = 37.3 bits (86), Expect = 0.004
 Identities = 14/39 (35%), Positives = 24/39 (61%)

Query: 170 EEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEE 208
            EE+    +       +E+   ++++EE++EEEEEEEEE
Sbjct: 141 AEEDMSPRDNFVIDDDDEDEDEDDDDEEDDEEEEEEEEE 179

Length = 2849

>gnl|CDD|237063 PRK12329, nusA, transcription elongation factor NusA; Provisional

 Score = 37.1 bits (86), Expect = 0.004
 Identities = 21/69 (30%), Positives = 35/69 (50%)

Query: 143 LEPLLVLTLRKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEE 202
            E   V  L  ++++++  ++E EE  E E+    EE+           +E E+E+E EE
Sbjct: 380 AEDAKVAELISQREEEEALQREAEERLEAEQAERAEEDARLRELYPLPEDEFEDEDELEE 439

Query: 203 EEEEEEEEE 211
            + EEEEE 
Sbjct: 440 AQPEEEEEA 448

Length = 449

>gnl|CDD|223003 PHA03169, PHA03169, hypothetical protein; Provisional

 Score = 37.3 bits (86), Expect = 0.004
 Identities = 8/48 (16%), Positives = 8/48 (16%)

Query: 164 EEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
                 EE   G   E   G   E                  E    E
Sbjct: 106 SPSGSAEELASGLSPENTSGSSPESPASHSPPPSPPSHPGPHEPAPPE 153

Length = 413

>gnl|CDD|219900 pfam08553, VID27, VID27 cytoplasmic protein

 Score = 37.4 bits (87), Expect = 0.004
 Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 3/60 (5%)

Query: 152 RKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
              K+K  K K+ E++   +     E E+     ++E   EEE+EEEEEEE+E+E   +E
Sbjct: 355 TLNKQKWTKAKETEQDYILDAFSALEIEDANTERDDE---EEEDEEEEEEEDEDEGPSKE 411

This is a family of fungal and plant proteins and contains many hypothetical proteins. VID27 is a cytoplasmic protein that plays a potential role in vacuolar protein degradation. Length = 794

>gnl|CDD|217049 pfam02459, Adeno_terminal, Adenoviral DNA terminal protein

 Score = 37.3 bits (87), Expect = 0.004
 Identities = 26/56 (46%), Positives = 32/56 (57%), Gaps = 10/56 (17%)

Query: 149 LTLRKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEE 204
           L LR++++++      E EEEEEEEE   EEEE          EEEEEEE   EEE
Sbjct: 288 LPLRRRRRRRPPPSPPEPEEEEEEEEEVPEEEE----------EEEEEEERTFEEE 333

This protein is covalently attached to the terminii of replicating DNA in vivo. Length = 548

>gnl|CDD|220377 pfam09747, DUF2052, Coiled-coil domain containing protein (DUF2052)

 Score = 36.6 bits (85), Expect = 0.004
 Identities = 24/69 (34%), Positives = 37/69 (53%)

Query: 143 LEPLLVLTLRKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEE 202
           L  +L  +L +++ + +  +++EEEE  EEEE   EEE     EE   G   EEEEE+ +
Sbjct: 56  LSGVLESSLDREEARLELLEQQEEEESAEEEEEDPEEENEEEEEEYQRGPFGEEEEEDGD 115

Query: 203 EEEEEEEEE 211
             +E    E
Sbjct: 116 SYDELPTPE 124

This entry is of sequences of two conserved domains separated by a region of low complexity, spanning some 200 residues. The function is unknown. Length = 178

>gnl|CDD|219124 pfam06658, DUF1168, Protein of unknown function (DUF1168)

 Score = 35.8 bits (83), Expect = 0.004
 Identities = 23/53 (43%), Positives = 36/53 (67%)

Query: 152 RKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEE 204
           R+KKK+KKKKKK+ ++  ++EE+ G +  E    EEE G E+++EE  E  E+
Sbjct: 90  RQKKKQKKKKKKKAKKGNKKEEKEGSKSSEESSDEEEEGEEDKQEEPVEIMEK 142

This family consists of several hypothetical eukaryotic proteins of unknown function. Length = 142

>gnl|CDD|185618 PTZ00438, PTZ00438, gamete antigen 27/25-like protein; Provisional

 Score = 37.0 bits (85), Expect = 0.004
 Identities = 22/61 (36%), Positives = 38/61 (62%)

Query: 151 LRKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEE 210
           L    K ++++  ++EEEE+E+ E  EE EE    EEE   +E+ E+++E+E + E +E 
Sbjct: 93  LNIIVKNEEERGTQKEEEEDEDVEEIEEVEEVEVVEEEYDDDEDSEKDDEKESDAEGDEN 152

Query: 211 E 211
           E
Sbjct: 153 E 153

Length = 374

>gnl|CDD|220135 pfam09184, PPP4R2, PPP4R2

 Score = 37.1 bits (86), Expect = 0.004
 Identities = 23/53 (43%), Positives = 36/53 (67%), Gaps = 10/53 (18%)

Query: 159 KKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
           K KK ++EE+++++ +  EE+E           +E+EEEEE EEEEEEE+E+E
Sbjct: 243 KNKKSDDEEDDDQDGDYVEEKE----------LKEDEEEEETEEEEEEEDEDE 285

PPP4R2 (protein phosphatase 4 core regulatory subunit R2) is the regulatory subunit of the histone H2A phosphatase complex. It has been shown to confer resistance to the anticancer drug cisplatin in yeast, and may confer resistance in higher eukaryotes. Length = 285

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	211
KOG0100|consensus	663		99.96
COG0443	579	DnaK Molecular chaperone [Posttranslational modifi	99.95
PRK13411	653	molecular chaperone DnaK; Provisional	99.94
PRK13410	668	molecular chaperone DnaK; Provisional	99.94
PTZ00186	657	heat shock 70 kDa precursor protein; Provisional	99.94
PTZ00400	663	DnaK-type molecular chaperone; Provisional	99.93
PRK00290	627	dnaK molecular chaperone DnaK; Provisional	99.93
PTZ00009	653	heat shock 70 kDa protein; Provisional	99.93
TIGR02350	595	prok_dnaK chaperone protein DnaK. Members of this	99.93
TIGR01991	599	HscA Fe-S protein assembly chaperone HscA. The Hea	99.93
PLN03184	673	chloroplast Hsp70; Provisional	99.93
PRK01433	595	hscA chaperone protein HscA; Provisional	99.93
PRK05183	616	hscA chaperone protein HscA; Provisional	99.93
CHL00094	621	dnaK heat shock protein 70	99.92
PF00012	602	HSP70: Hsp70 protein; InterPro: IPR013126 Heat sho	99.91
KOG0102|consensus	640		99.89
PRK11678	450	putative chaperone; Provisional	99.89
KOG0101|consensus	620		99.87
KOG0104|consensus	902		99.83
KOG0103|consensus	727		99.83
TIGR02529	239	EutJ ethanolamine utilization protein EutJ family	99.67
PRK13929	335	rod-share determining protein MreBH; Provisional	99.65
PRK13928	336	rod shape-determining protein Mbl; Provisional	99.63
TIGR00904	333	mreB cell shape determining protein, MreB/Mrl fami	99.55
PRK13927	334	rod shape-determining protein MreB; Provisional	99.54
PRK13930	335	rod shape-determining protein MreB; Provisional	99.5
PF06723	326	MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Ba	99.46
PRK15080	267	ethanolamine utilization protein EutJ; Provisional	99.37
COG1077	342	MreB Actin-like ATPase involved in cell morphogene	99.34
COG4820	277	EutJ Ethanolamine utilization protein, possible ch	98.76
PRK09472	420	ftsA cell division protein FtsA; Reviewed	98.43
TIGR01174	371	ftsA cell division protein FtsA. This bacterial ce	98.41
cd00012	371	ACTIN Actin; An ubiquitous protein involved in the	97.94
TIGR03739	320	PRTRC_D PRTRC system protein D. A novel genetic sy	97.86
smart00268	373	ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarki	97.85
COG0849	418	ftsA Cell division ATPase FtsA [Cell division and	97.83
PRK13917	344	plasmid segregation protein ParM; Provisional	97.44
PF00022	393	Actin: Actin; InterPro: IPR004000 Actin [, ] is a	97.09
PF07520	1002	SrfB: Virulence factor SrfB; InterPro: IPR009216 T	96.64
TIGR01175	348	pilM type IV pilus assembly protein PilM. This pro	96.6
PF06406	318	StbA: StbA protein; InterPro: IPR009440 This entry	96.59
PTZ00280	414	Actin-related protein 3; Provisional	96.54
PRK10719	475	eutA reactivating factor for ethanolamine ammonia	96.43
KOG0679|consensus	426		96.32
PF02541	285	Ppx-GppA: Ppx/GppA phosphatase family; InterPro: I	95.99
PTZ00004	378	actin-2; Provisional	95.93
PRK10854	513	exopolyphosphatase; Provisional	95.73
PTZ00452	375	actin; Provisional	95.61
PTZ00281	376	actin; Provisional	95.54
PTZ00466	380	actin-like protein; Provisional	95.49
PRK11031	496	guanosine pentaphosphate phosphohydrolase; Provisi	95.25
COG4457	1014	SrfB Uncharacterized protein conserved in bacteria	95.05
COG0145	674	HyuA N-methylhydantoinase A/acetone carboxylase, b	95.04
PF08841	332	DDR: Diol dehydratase reactivase ATPase-like domai	94.89
TIGR03706	300	exo_poly_only exopolyphosphatase. It appears that	94.8
COG0248	492	GppA Exopolyphosphatase [Nucleotide transport and	94.64
PF01968	290	Hydantoinase_A: Hydantoinase/oxoprolinase; InterPr	94.3
KOG0797|consensus	618		93.89
PLN02666	1275	5-oxoprolinase	90.05
PF11104	340	PilM_2: Type IV pilus assembly protein PilM;; PDB:	88.52
COG5277	444	Actin and related proteins [Cytoskeleton]	87.77
TIGR03123	318	one_C_unchar_1 probable H4MPT-linked C1 transfer p	84.15
TIGR00744	318	ROK_glcA_fam ROK family protein (putative glucokin	82.69
COG2069	403	CdhD CO dehydrogenase/acetyl-CoA synthase delta su	82.65
cd06007	59	R3H_DEXH_helicase R3H domain of a group of protein	80.61
PF08735	254	DUF1786: Putative pyruvate format-lyase activating	80.54

>KOG0100|consensus

Probab=99.96  E-value=6.9e-30  Score=230.43  Aligned_cols=136  Identities=51%  Similarity=0.687  Sum_probs=120.2

Q ss_pred             HhhhcccCcccchhhHhhhhhcCCCCC------------ccccee--------------cceeeccccCCCchHHHHHHH
Q psy471           14 KLRQNQPCQATDNNIGYLARSFEGPEW------------DYGHVR--------------LRKSFSPRCCHHSPRLFQLLT   67 (211)
Q Consensus        14 ~~a~~~~~~~p~n~~~~l~r~~~g~~~------------~~~~~~--------------~~k~~speel~~~~~~a~iL~   67 (211)
                      ..++++...+|.|.++-.+|.+ |+.|            +|..+.              ..|.|+|++|     ++|+|.
T Consensus        85 dAAKNQ~~~NPenTiFD~KRLI-Gr~~~d~~vq~Dik~~Pfkvv~k~~kp~i~v~v~~g~~K~FtPeEi-----SaMiL~  158 (663)
T KOG0100|consen   85 DAAKNQLTSNPENTIFDAKRLI-GRKFNDKSVQKDIKFLPFKVVNKDGKPYIQVKVGGGETKVFTPEEI-----SAMILT  158 (663)
T ss_pred             hHhhcccccCcccceechHHHh-CcccCChhhhhhhhcCceEEEcCCCCccEEEEccCCcccccCHHHH-----HHHHHH
Confidence            5677888889999887776666 5543            232221              2689999999     999999


Q ss_pred             HHHHHHHHhhccccceeeEccCCCccHHHHHHHHHHHHHhCCceeEEeechhHHHHHcccccCCCCCceEEEeecCCCce
Q psy471           68 KMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVKLPKMLEPLL  147 (211)
Q Consensus        68 ~L~~~a~~~~g~~~~~vVItVPa~f~~~qR~al~~Aa~~aGl~~~~lv~EP~AAAl~y~~~~~~~~~~~vLV~D~GggT~  147 (211)
                      +++++|+.++|..+.++|+||||||+++||+++++|..+||++++||||+|+|||++||+++. ...++|||||+|||||
T Consensus       159 KMKe~AEayLGkkv~~AVvTvPAYFNDAQrQATKDAGtIAgLnV~RIiNePTaAAIAYGLDKk-~gEknilVfDLGGGTF  237 (663)
T KOG0100|consen  159 KMKETAEAYLGKKVTHAVVTVPAYFNDAQRQATKDAGTIAGLNVVRIINEPTAAAIAYGLDKK-DGEKNILVFDLGGGTF  237 (663)
T ss_pred             HHHHHHHHHhCCcccceEEecchhcchHHHhhhcccceeccceEEEeecCccHHHHHhccccc-CCcceEEEEEcCCceE
Confidence            999999999999999999999999999999999999999999999999999999999999987 5688999999999999


Q ss_pred             EEEEEeccc
Q psy471          148 VLTLRKKKK  156 (211)
Q Consensus       148 Dvsv~~~~~  156 (211)
                      |+|++.++-
T Consensus       238 DVSlLtIdn  246 (663)
T KOG0100|consen  238 DVSLLTIDN  246 (663)
T ss_pred             EEEEEEEcC
Confidence            999998764

>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=7.4e-28  Score=229.41  Aligned_cols=135  Identities=47%  Similarity=0.583  Sum_probs=119.9

Q ss_pred             HhhhcccCcccchhhHhhhhhcCCCC-Cc-ccceecceeeccccCCCchHHHHHHHHHHHHHHHhhccccceeeEccCCC
Q psy471           14 KLRQNQPCQATDNNIGYLARSFEGPE-WD-YGHVRLRKSFSPRCCHHSPRLFQLLTKMKETAEAYLGHSVRDAVITVPAY   91 (211)
Q Consensus        14 ~~a~~~~~~~p~n~~~~l~r~~~g~~-~~-~~~~~~~k~~speel~~~~~~a~iL~~L~~~a~~~~g~~~~~vVItVPa~   91 (211)
                      ..+.++...+|.|.++.++|.++-.. .. ......++.|+|++|     ++++|++|++.|+.+++..+..+|||||+|
T Consensus        56 ~~A~~q~~~~p~~t~~~~kr~~G~~~~~~~~~~~~~~~~~~~eei-----sa~~L~~lk~~ae~~lg~~v~~~VItVPay  130 (579)
T COG0443          56 QAAKRQAVDNPENTIFSIKRKIGRGSNGLKISVEVDGKKYTPEEI-----SAMILTKLKEDAEAYLGEKVTDAVITVPAY  130 (579)
T ss_pred             HHHHHHhhhCCcceEEEEehhcCCCCCCCcceeeeCCeeeCHHHH-----HHHHHHHHHHHHHHhhCCCcceEEEEeCCC
Confidence            45666777888888888888876332 11 233344589999999     999999999999999999999999999999


Q ss_pred             ccHHHHHHHHHHHHHhCCceeEEeechhHHHHHcccccCCCCCceEEEeecCCCceEEEEEecc
Q psy471           92 FNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVKLPKMLEPLLVLTLRKKK  155 (211)
Q Consensus        92 f~~~qR~al~~Aa~~aGl~~~~lv~EP~AAAl~y~~~~~~~~~~~vLV~D~GggT~Dvsv~~~~  155 (211)
                      |++.||+++++||.+||+++++|+|||+|||++|++.+.  .+.+||||||||||||+||+++.
T Consensus       131 F~d~qR~at~~A~~iaGl~vlrlinEPtAAAlayg~~~~--~~~~vlV~DlGGGTfDvSll~~~  192 (579)
T COG0443         131 FNDAQRQATKDAARIAGLNVLRLINEPTAAALAYGLDKG--KEKTVLVYDLGGGTFDVSLLEIG  192 (579)
T ss_pred             CCHHHHHHHHHHHHHcCCCeEEEecchHHHHHHhHhccC--CCcEEEEEEcCCCCEEEEEEEEc
Confidence            999999999999999999999999999999999999988  88999999999999999999987

>PRK13411 molecular chaperone DnaK; Provisional

Probab=99.94  E-value=1.3e-26  Score=223.73  Aligned_cols=146  Identities=41%  Similarity=0.560  Sum_probs=121.0

Q ss_pred             cceehhhh------HHhhhcccCcccchhhHhhhhhcCCCC---------Ccc----------cceecceeeccccCCCc
Q psy471            5 LTIVSLED------VKLRQNQPCQATDNNIGYLARSFEGPE---------WDY----------GHVRLRKSFSPRCCHHS   59 (211)
Q Consensus         5 ~~~~s~~~------~~~a~~~~~~~p~n~~~~l~r~~~g~~---------~~~----------~~~~~~k~~speel~~~   59 (211)
                      .|+++|..      ...|.++...+|.|.++.++|.++.+.         +++          .....++.|+|++|   
T Consensus        37 PS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~peei---  113 (653)
T PRK13411         37 PSIVGFGKSGDRLVGQLAKRQAVTNAENTVYSIKRFIGRRWDDTEEERSRVPYTCVKGRDDTVNVQIRGRNYTPQEI---  113 (653)
T ss_pred             ceEEEEeCCCCEEEcHHHHHhhhhCcccchHHHHHHhCCCccchhHHhhcCCceEEecCCCceEEEECCEEECHHHH---
Confidence            45666632      334556666788888887877775331         111          12334678999999   


Q ss_pred             hHHHHHHHHHHHHHHHhhccccceeeEccCCCccHHHHHHHHHHHHHhCCceeEEeechhHHHHHcccccCCCCCceEEE
Q psy471           60 PRLFQLLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVKL  139 (211)
Q Consensus        60 ~~~a~iL~~L~~~a~~~~g~~~~~vVItVPa~f~~~qR~al~~Aa~~aGl~~~~lv~EP~AAAl~y~~~~~~~~~~~vLV  139 (211)
                        ++++|++|++.|..++|.++.++|||||++|++.||+++++||.+||+++++||+||+|||++|++.+. ...+++||
T Consensus       114 --~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~Aa~~AGl~v~~li~EPtAAAl~y~~~~~-~~~~~vlV  190 (653)
T PRK13411        114 --SAMILQKLKQDAEAYLGEPVTQAVITVPAYFTDAQRQATKDAGTIAGLEVLRIINEPTAAALAYGLDKQ-DQEQLILV  190 (653)
T ss_pred             --HHHHHHHHHHHHHHHhCCCcceEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEecchHHHHHHhccccc-CCCCEEEE
Confidence              999999999999999999999999999999999999999999999999999999999999999998764 34688999


Q ss_pred             eecCCCceEEEEEeccc
Q psy471          140 PKMLEPLLVLTLRKKKK  156 (211)
Q Consensus       140 ~D~GggT~Dvsv~~~~~  156 (211)
                      |||||||||+||+++.+
T Consensus       191 ~DlGgGT~dvsi~~~~~  207 (653)
T PRK13411        191 FDLGGGTFDVSILQLGD  207 (653)
T ss_pred             EEcCCCeEEEEEEEEeC
Confidence            99999999999999864

>PRK13410 molecular chaperone DnaK; Provisional

Probab=99.94  E-value=1.2e-26  Score=224.34  Aligned_cols=146  Identities=40%  Similarity=0.542  Sum_probs=121.2

Q ss_pred             ccceehhhh------HHhhhcccCcccchhhHhhhhhcCCCC---------Ccccce------------ecceeeccccC
Q psy471            4 LLTIVSLED------VKLRQNQPCQATDNNIGYLARSFEGPE---------WDYGHV------------RLRKSFSPRCC   56 (211)
Q Consensus         4 ~~~~~s~~~------~~~a~~~~~~~p~n~~~~l~r~~~g~~---------~~~~~~------------~~~k~~speel   56 (211)
                      +.|+++|..      ...|.++...+|.|.++.++|.++.+.         +++...            ..++.|+|++|
T Consensus        36 tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KRliG~~~~~~~~~~~~~~~~v~~~~~g~~~i~~~~~~~~~speel  115 (668)
T PRK13410         36 TPSVVGFTKDGELLVGQLARRQLVLNPQNTFYNLKRFIGRRYDELDPESKRVPYTIRRNEQGNVRIKCPRLEREFAPEEL  115 (668)
T ss_pred             CceEEEEeCCCCEEECHHHHHhhHhCccceehHHhhhhCCCchhhHHhhccCCeEEEECCCCcEEEEEecCCeEEcHHHH
Confidence            345666642      334555566778888887888775431         122221            13578999999


Q ss_pred             CCchHHHHHHHHHHHHHHHhhccccceeeEccCCCccHHHHHHHHHHHHHhCCceeEEeechhHHHHHcccccCCCCCce
Q psy471           57 HHSPRLFQLLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERN  136 (211)
Q Consensus        57 ~~~~~~a~iL~~L~~~a~~~~g~~~~~vVItVPa~f~~~qR~al~~Aa~~aGl~~~~lv~EP~AAAl~y~~~~~~~~~~~  136 (211)
                           ++++|++|++.|..++|.++.++|||||++|++.||+++++||++||+++++||+||+|||++|++.+.  .+++
T Consensus       116 -----~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~Aa~~AGl~v~~li~EPtAAAlayg~~~~--~~~~  188 (668)
T PRK13410        116 -----SAMILRKLADDASRYLGEPVTGAVITVPAYFNDSQRQATRDAGRIAGLEVERILNEPTAAALAYGLDRS--SSQT  188 (668)
T ss_pred             -----HHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHHHHHcCCCeEEEecchHHHHHHhccccC--CCCE
Confidence                 999999999999999999999999999999999999999999999999999999999999999998765  6789


Q ss_pred             EEEeecCCCceEEEEEeccc
Q psy471          137 VKLPKMLEPLLVLTLRKKKK  156 (211)
Q Consensus       137 vLV~D~GggT~Dvsv~~~~~  156 (211)
                      +|||||||||||+||+++.+
T Consensus       189 vlV~DlGgGT~Dvsv~~~~~  208 (668)
T PRK13410        189 VLVFDLGGGTFDVSLLEVGN  208 (668)
T ss_pred             EEEEECCCCeEEEEEEEEcC
Confidence            99999999999999999864

>PTZ00186 heat shock 70 kDa precursor protein; Provisional

Probab=99.94  E-value=2e-26  Score=222.37  Aligned_cols=145  Identities=41%  Similarity=0.534  Sum_probs=121.1

Q ss_pred             cceehhhh-----HHhhhcccCcccchhhHhhhhhcCCCC-----------Ccccce-----------ecceeeccccCC
Q psy471            5 LTIVSLED-----VKLRQNQPCQATDNNIGYLARSFEGPE-----------WDYGHV-----------RLRKSFSPRCCH   57 (211)
Q Consensus         5 ~~~~s~~~-----~~~a~~~~~~~p~n~~~~l~r~~~g~~-----------~~~~~~-----------~~~k~~speel~   57 (211)
                      .|+++|.+     ...|.++...+|.+.++.++|.++.+.           |++...           ..++.|+|++| 
T Consensus        62 PS~V~f~~~~~lvG~~Ak~~~~~~p~~ti~~~KRliG~~~~d~~v~~~~~~~p~~vv~~~~~~~~i~~~~~~~~speei-  140 (657)
T PTZ00186         62 PSVVAFKGSEKLVGLAAKRQAITNPQSTFYAVKRLIGRRFEDEHIQKDIKNVPYKIVRAGNGDAWVQDGNGKQYSPSQI-  140 (657)
T ss_pred             ceEEEECCCCEEEcHHHHHhhhhCchhHHHHHHHHhccccccHHHHHhhccCcEEEEEcCCCceEEEeCCCeEEcHHHH-
Confidence            35555542     334555666788888888888885331           233221           14688999999 


Q ss_pred             CchHHHHHHHHHHHHHHHhhccccceeeEccCCCccHHHHHHHHHHHHHhCCceeEEeechhHHHHHcccccCCCCCceE
Q psy471           58 HSPRLFQLLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNV  137 (211)
Q Consensus        58 ~~~~~a~iL~~L~~~a~~~~g~~~~~vVItVPa~f~~~qR~al~~Aa~~aGl~~~~lv~EP~AAAl~y~~~~~~~~~~~v  137 (211)
                          ++++|++|+..|+.++|.++..+|||||+||++.||+++++||.+||+++++||+||+|||++|++.+.  ..+++
T Consensus       141 ----sa~iL~~Lk~~Ae~~lg~~v~~aVITVPayF~~~qR~at~~Aa~~AGl~v~rlInEPtAAAlayg~~~~--~~~~v  214 (657)
T PTZ00186        141 ----GAFVLEKMKETAENFLGHKVSNAVVTCPAYFNDAQRQATKDAGTIAGLNVIRVVNEPTAAALAYGMDKT--KDSLI  214 (657)
T ss_pred             ----HHHHHHHHHHHHHHHhCCccceEEEEECCCCChHHHHHHHHHHHHcCCCeEEEEcChHHHHHHHhccCC--CCCEE
Confidence                999999999999999999999999999999999999999999999999999999999999999998765  57899


Q ss_pred             EEeecCCCceEEEEEeccc
Q psy471          138 KLPKMLEPLLVLTLRKKKK  156 (211)
Q Consensus       138 LV~D~GggT~Dvsv~~~~~  156 (211)
                      |||||||||||+||+++.+
T Consensus       215 lV~DlGGGT~DvSil~~~~  233 (657)
T PTZ00186        215 AVYDLGGGTFDISVLEIAG  233 (657)
T ss_pred             EEEECCCCeEEEEEEEEeC
Confidence            9999999999999999864

>PTZ00400 DnaK-type molecular chaperone; Provisional

Probab=99.93  E-value=2.8e-26  Score=221.67  Aligned_cols=146  Identities=41%  Similarity=0.557  Sum_probs=120.8

Q ss_pred             ccceehhhh------HHhhhcccCcccchhhHhhhhhcCCCC-----------Cccc----------ceecceeeccccC
Q psy471            4 LLTIVSLED------VKLRQNQPCQATDNNIGYLARSFEGPE-----------WDYG----------HVRLRKSFSPRCC   56 (211)
Q Consensus         4 ~~~~~s~~~------~~~a~~~~~~~p~n~~~~l~r~~~g~~-----------~~~~----------~~~~~k~~speel   56 (211)
                      +.++++|..      ...|.++...+|.|.++.++|.++.+.           +++.          ....++.|+|++|
T Consensus        75 tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~speel  154 (663)
T PTZ00400         75 TPSVVAFTEDGQRLVGIVAKRQAVTNPENTVFATKRLIGRRYDEDATKKEQKILPYKIVRASNGDAWIEAQGKKYSPSQI  154 (663)
T ss_pred             cCeEEEEeCCCCEEECHHHHHhHHhCCcceehhhhhhcCCCcCcHHHHhhhccCCeEEEecCCCceEEEECCEEECHHHH
Confidence            345666632      334555566778888777777775331           1221          1234678999999


Q ss_pred             CCchHHHHHHHHHHHHHHHhhccccceeeEccCCCccHHHHHHHHHHHHHhCCceeEEeechhHHHHHcccccCCCCCce
Q psy471           57 HHSPRLFQLLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERN  136 (211)
Q Consensus        57 ~~~~~~a~iL~~L~~~a~~~~g~~~~~vVItVPa~f~~~qR~al~~Aa~~aGl~~~~lv~EP~AAAl~y~~~~~~~~~~~  136 (211)
                           ++++|++|++.|..++|.++..+|||||++|++.||+++++||.+||+++++||+||+|||++|++.+.  .+++
T Consensus       155 -----~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAAlay~~~~~--~~~~  227 (663)
T PTZ00400        155 -----GAFVLEKMKETAESYLGRKVKQAVITVPAYFNDSQRQATKDAGKIAGLDVLRIINEPTAAALAFGMDKN--DGKT  227 (663)
T ss_pred             -----HHHHHHHHHHHHHHHhCCCCceEEEEECCCCCHHHHHHHHHHHHHcCCceEEEeCchHHHHHHhccccC--CCcE
Confidence                 999999999999999999999999999999999999999999999999999999999999999998765  6789


Q ss_pred             EEEeecCCCceEEEEEeccc
Q psy471          137 VKLPKMLEPLLVLTLRKKKK  156 (211)
Q Consensus       137 vLV~D~GggT~Dvsv~~~~~  156 (211)
                      +|||||||||||+||+++.+
T Consensus       228 vlV~DlGgGT~DvSv~~~~~  247 (663)
T PTZ00400        228 IAVYDLGGGTFDISILEILG  247 (663)
T ss_pred             EEEEeCCCCeEEEEEEEecC
Confidence            99999999999999999864

>PRK00290 dnaK molecular chaperone DnaK; Provisional

Probab=99.93  E-value=7e-26  Score=217.53  Aligned_cols=145  Identities=42%  Similarity=0.585  Sum_probs=121.7

Q ss_pred             cceehhh-h-----HHhhhcccCcccchhhHhhhhhcCCCC---------Ccc----------cceecceeeccccCCCc
Q psy471            5 LTIVSLE-D-----VKLRQNQPCQATDNNIGYLARSFEGPE---------WDY----------GHVRLRKSFSPRCCHHS   59 (211)
Q Consensus         5 ~~~~s~~-~-----~~~a~~~~~~~p~n~~~~l~r~~~g~~---------~~~----------~~~~~~k~~speel~~~   59 (211)
                      .|+++|. +     ...|.++...+|.+.++.++|.++.+.         +++          .....++.|+|++|   
T Consensus        37 PS~V~f~~~~~~~vG~~A~~~~~~~p~~~i~~~Kr~iG~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~peel---  113 (627)
T PRK00290         37 PSVVAFTKDGERLVGQPAKRQAVTNPENTIFSIKRLMGRRDEEVQKDIKLVPYKIVKADNGDAWVEIDGKKYTPQEI---  113 (627)
T ss_pred             ceEEEEeCCCCEEEcHHHHHhhhhCchhhHHHHHHHhCCCchHHHHHhhcCCeEEEEcCCCceEEEECCEEEcHHHH---
Confidence            3566664 2     334555666788888888888886441         111          12335678999999   


Q ss_pred             hHHHHHHHHHHHHHHHhhccccceeeEccCCCccHHHHHHHHHHHHHhCCceeEEeechhHHHHHcccccCCCCCceEEE
Q psy471           60 PRLFQLLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVKL  139 (211)
Q Consensus        60 ~~~a~iL~~L~~~a~~~~g~~~~~vVItVPa~f~~~qR~al~~Aa~~aGl~~~~lv~EP~AAAl~y~~~~~~~~~~~vLV  139 (211)
                        ++++|++|+..|.+++|.++..+|||||++|++.||+++++||.+||+++++||+||+|||++|++.+.  .++++||
T Consensus       114 --~a~iL~~lk~~ae~~~g~~v~~~VItVPa~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAAl~y~~~~~--~~~~vlV  189 (627)
T PRK00290        114 --SAMILQKLKKDAEDYLGEKVTEAVITVPAYFNDAQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKK--GDEKILV  189 (627)
T ss_pred             --HHHHHHHHHHHHHHHhCCCCceEEEEECCCCCHHHHHHHHHHHHHcCCceEEEecchHHHHHHhhhccC--CCCEEEE
Confidence              999999999999999999999999999999999999999999999999999999999999999998764  5789999


Q ss_pred             eecCCCceEEEEEeccc
Q psy471          140 PKMLEPLLVLTLRKKKK  156 (211)
Q Consensus       140 ~D~GggT~Dvsv~~~~~  156 (211)
                      |||||||||+||+++.+
T Consensus       190 ~D~GggT~dvsv~~~~~  206 (627)
T PRK00290        190 YDLGGGTFDVSILEIGD  206 (627)
T ss_pred             EECCCCeEEEEEEEEeC
Confidence            99999999999999853

>PTZ00009 heat shock 70 kDa protein; Provisional

Probab=99.93  E-value=3.8e-26  Score=220.36  Aligned_cols=147  Identities=46%  Similarity=0.640  Sum_probs=119.3

Q ss_pred             cceehhhh-----HHhhhcccCcccchhhHhhhhhcCCCC-----------Ccccce--------------ecceeeccc
Q psy471            5 LTIVSLED-----VKLRQNQPCQATDNNIGYLARSFEGPE-----------WDYGHV--------------RLRKSFSPR   54 (211)
Q Consensus         5 ~~~~s~~~-----~~~a~~~~~~~p~n~~~~l~r~~~g~~-----------~~~~~~--------------~~~k~~spe   54 (211)
                      .|+++|.+     ...|.++...+|.|.++.++|.++-+.           |++...              ...+.|+|+
T Consensus        39 PS~V~f~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~pe  118 (653)
T PTZ00009         39 PSYVAFTDTERLIGDAAKNQVARNPENTVFDAKRLIGRKFDDSVVQSDMKHWPFKVTTGGDDKPMIEVTYQGEKKTFHPE  118 (653)
T ss_pred             CcEEEECCCCEEEcHHHHHhhhhCcccEEhhhHHHhCCCCCchhHhhhhhcCceEEEEcCCCceEEEEEeCCceEEECHH
Confidence            35555542     233444555677787777777774321           222211              124789999


Q ss_pred             cCCCchHHHHHHHHHHHHHHHhhccccceeeEccCCCccHHHHHHHHHHHHHhCCceeEEeechhHHHHHcccccCCCCC
Q psy471           55 CCHHSPRLFQLLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGE  134 (211)
Q Consensus        55 el~~~~~~a~iL~~L~~~a~~~~g~~~~~vVItVPa~f~~~qR~al~~Aa~~aGl~~~~lv~EP~AAAl~y~~~~~~~~~  134 (211)
                      +|     ++++|++|++.|++++|.++.++|||||++|++.||+++++||++||+++++||+||+|||++|++.+....+
T Consensus       119 el-----~a~iL~~lk~~ae~~~g~~v~~~VItVPa~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAAl~y~~~~~~~~~  193 (653)
T PTZ00009        119 EI-----SSMVLQKMKEIAEAYLGKQVKDAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYGLDKKGDGE  193 (653)
T ss_pred             HH-----HHHHHHHHHHHHHHHhCCCcceeEEEeCCCCCHHHHHHHHHHHHHcCCceeEEecchHHHHHHHhhhccCCCC
Confidence            99     9999999999999999999999999999999999999999999999999999999999999999987654457


Q ss_pred             ceEEEeecCCCceEEEEEeccc
Q psy471          135 RNVKLPKMLEPLLVLTLRKKKK  156 (211)
Q Consensus       135 ~~vLV~D~GggT~Dvsv~~~~~  156 (211)
                      +++|||||||||||+||+++.+
T Consensus       194 ~~vlv~D~GggT~dvsv~~~~~  215 (653)
T PTZ00009        194 KNVLIFDLGGGTFDVSLLTIED  215 (653)
T ss_pred             CEEEEEECCCCeEEEEEEEEeC
Confidence            8999999999999999999854

>TIGR02350 prok_dnaK chaperone protein DnaK

Probab=99.93  E-value=6.7e-26  Score=216.28  Aligned_cols=146  Identities=42%  Similarity=0.564  Sum_probs=121.5

Q ss_pred             cceehhh-h-----HHhhhcccCcccchhhHhhhhhcCCCC---------Ccc---------cceecceeeccccCCCch
Q psy471            5 LTIVSLE-D-----VKLRQNQPCQATDNNIGYLARSFEGPE---------WDY---------GHVRLRKSFSPRCCHHSP   60 (211)
Q Consensus         5 ~~~~s~~-~-----~~~a~~~~~~~p~n~~~~l~r~~~g~~---------~~~---------~~~~~~k~~speel~~~~   60 (211)
                      .|+++|. +     ...|.++...+|.+.++.++|.++.+.         +++         .....++.|+|++|    
T Consensus        35 PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~Kr~iG~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~peel----  110 (595)
T TIGR02350        35 PSVVAFTKNGERLVGQPAKRQAVTNPENTIYSIKRFMGRRFDEVTEEAKRVPYKVVGDGGDVRVKVDGKEYTPQEI----  110 (595)
T ss_pred             CeEEEEeCCCCEEECHHHHHhhhhCchhhhHHHHHHhCCCchHHHHHhhcCCeeEEcCCCceEEEECCEEecHHHH----
Confidence            4566664 2     334555566788888888888775431         111         22345788999999    


Q ss_pred             HHHHHHHHHHHHHHHhhccccceeeEccCCCccHHHHHHHHHHHHHhCCceeEEeechhHHHHHcccccCCCCCceEEEe
Q psy471           61 RLFQLLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVKLP  140 (211)
Q Consensus        61 ~~a~iL~~L~~~a~~~~g~~~~~vVItVPa~f~~~qR~al~~Aa~~aGl~~~~lv~EP~AAAl~y~~~~~~~~~~~vLV~  140 (211)
                       ++++|++|+..|..++|.++..+|||||++|++.||+++++||.+||+++++||+||+|||++|++.+. ..++++|||
T Consensus       111 -~a~~L~~l~~~a~~~~~~~v~~~VItVPa~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAAl~y~~~~~-~~~~~vlV~  188 (595)
T TIGR02350       111 -SAMILQKLKKDAEAYLGEKVTEAVITVPAYFNDAQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKS-KKDEKILVF  188 (595)
T ss_pred             -HHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHHHHcCCceEEEecchHHHHHHHhhccc-CCCcEEEEE
Confidence             999999999999999999999999999999999999999999999999999999999999999998763 367899999


Q ss_pred             ecCCCceEEEEEeccc
Q psy471          141 KMLEPLLVLTLRKKKK  156 (211)
Q Consensus       141 D~GggT~Dvsv~~~~~  156 (211)
                      ||||||||+||+++.+
T Consensus       189 D~Gggt~dvsv~~~~~  204 (595)
T TIGR02350       189 DLGGGTFDVSILEIGD  204 (595)
T ss_pred             ECCCCeEEEEEEEecC
Confidence            9999999999999863

Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.

>TIGR01991 HscA Fe-S protein assembly chaperone HscA

Probab=99.93  E-value=7.9e-26  Score=216.32  Aligned_cols=145  Identities=39%  Similarity=0.513  Sum_probs=120.4

Q ss_pred             cceehhh-h-----HHhhhcccCcccchhhHhhhhhcCCCC--------Ccccce----------ecceeeccccCCCch
Q psy471            5 LTIVSLE-D-----VKLRQNQPCQATDNNIGYLARSFEGPE--------WDYGHV----------RLRKSFSPRCCHHSP   60 (211)
Q Consensus         5 ~~~~s~~-~-----~~~a~~~~~~~p~n~~~~l~r~~~g~~--------~~~~~~----------~~~k~~speel~~~~   60 (211)
                      .|+++|. +     ...|.++...+|.+.+..++|.++.+.        +++...          ..++.|+|++|    
T Consensus        34 PS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~Kr~iG~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ei----  109 (599)
T TIGR01991        34 PSVVRYLKDGGVEVGKEALAAAAEDPKNTISSVKRLMGRSIEDIKTFSILPYRFVDGPGEMVRLRTVQGTVTPVEV----  109 (599)
T ss_pred             CeEEEEeCCCCEEecHHHHHhhhhChhhhHHHHHHHhCCCccchhhcccCCEEEEEcCCCceEEEeCCCEEcHHHH----
Confidence            3566553 2     344555566678888888888885432        133221          12457999999    


Q ss_pred             HHHHHHHHHHHHHHHhhccccceeeEccCCCccHHHHHHHHHHHHHhCCceeEEeechhHHHHHcccccCCCCCceEEEe
Q psy471           61 RLFQLLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVKLP  140 (211)
Q Consensus        61 ~~a~iL~~L~~~a~~~~g~~~~~vVItVPa~f~~~qR~al~~Aa~~aGl~~~~lv~EP~AAAl~y~~~~~~~~~~~vLV~  140 (211)
                       ++++|++|++.|..++|.++..+|||||++|++.||+++++||.+||+++++||+||+|||++|++.+.  .++++|||
T Consensus       110 -~a~iL~~lk~~a~~~lg~~v~~~VItVPa~f~~~qR~a~~~Aa~~AGl~v~~li~EPtAAAlay~~~~~--~~~~vlV~  186 (599)
T TIGR01991       110 -SAEILKKLKQRAEESLGGDLVGAVITVPAYFDDAQRQATKDAARLAGLNVLRLLNEPTAAAVAYGLDKA--SEGIYAVY  186 (599)
T ss_pred             -HHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHHHHHcCCCceEEecCHHHHHHHHhhccC--CCCEEEEE
Confidence             999999999999999999999999999999999999999999999999999999999999999998775  67899999


Q ss_pred             ecCCCceEEEEEeccc
Q psy471          141 KMLEPLLVLTLRKKKK  156 (211)
Q Consensus       141 D~GggT~Dvsv~~~~~  156 (211)
                      ||||||||+||+++.+
T Consensus       187 DlGgGT~DvSi~~~~~  202 (599)
T TIGR01991       187 DLGGGTFDVSILKLTK  202 (599)
T ss_pred             EcCCCeEEEEEEEEcC
Confidence            9999999999999864

The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.

>PLN03184 chloroplast Hsp70; Provisional

Probab=99.93  E-value=8.7e-26  Score=218.54  Aligned_cols=146  Identities=35%  Similarity=0.497  Sum_probs=122.5

Q ss_pred             ccceehhhh------HHhhhcccCcccchhhHhhhhhcCCCC---------Ccccce------------ecceeeccccC
Q psy471            4 LLTIVSLED------VKLRQNQPCQATDNNIGYLARSFEGPE---------WDYGHV------------RLRKSFSPRCC   56 (211)
Q Consensus         4 ~~~~~s~~~------~~~a~~~~~~~p~n~~~~l~r~~~g~~---------~~~~~~------------~~~k~~speel   56 (211)
                      +.|+++|..      ...|.++...+|.|.+..++|+++.+.         +++...            ..++.|+|++|
T Consensus        73 tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~speei  152 (673)
T PLN03184         73 TPSVVAYTKNGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMSEVDEESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEI  152 (673)
T ss_pred             cceEEEEcCCCCEEECHHHHHhhhhCchhhhHHHHHhhCCCcchhhhhhhcCCeEEEecCCCcEEEEEecCCeEEcHHHH
Confidence            346776642      345666677789998888888885332         122221            23678999999


Q ss_pred             CCchHHHHHHHHHHHHHHHhhccccceeeEccCCCccHHHHHHHHHHHHHhCCceeEEeechhHHHHHcccccCCCCCce
Q psy471           57 HHSPRLFQLLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERN  136 (211)
Q Consensus        57 ~~~~~~a~iL~~L~~~a~~~~g~~~~~vVItVPa~f~~~qR~al~~Aa~~aGl~~~~lv~EP~AAAl~y~~~~~~~~~~~  136 (211)
                           ++++|++|+..|.++++.++..+|||||++|++.||+++++||.+||+++++||+||+|||++|++.+.  .+++
T Consensus       153 -----~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~Aa~~AGl~v~~li~EPtAAAlayg~~~~--~~~~  225 (673)
T PLN03184        153 -----SAQVLRKLVDDASKFLNDKVTKAVITVPAYFNDSQRTATKDAGRIAGLEVLRIINEPTAASLAYGFEKK--SNET  225 (673)
T ss_pred             -----HHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHHHHCCCCeEEEeCcHHHHHHHhhcccC--CCCE
Confidence                 999999999999999999999999999999999999999999999999999999999999999998765  5789


Q ss_pred             EEEeecCCCceEEEEEeccc
Q psy471          137 VKLPKMLEPLLVLTLRKKKK  156 (211)
Q Consensus       137 vLV~D~GggT~Dvsv~~~~~  156 (211)
                      +|||||||||||+||+++.+
T Consensus       226 vlV~DlGgGT~DvSi~~~~~  245 (673)
T PLN03184        226 ILVFDLGGGTFDVSVLEVGD  245 (673)
T ss_pred             EEEEECCCCeEEEEEEEecC
Confidence            99999999999999999853

>PRK01433 hscA chaperone protein HscA; Provisional

Probab=99.93  E-value=8.1e-26  Score=216.10  Aligned_cols=104  Identities=34%  Similarity=0.417  Sum_probs=97.6

Q ss_pred             ecceeeccccCCCchHHHHHHHHHHHHHHHhhccccceeeEccCCCccHHHHHHHHHHHHHhCCceeEEeechhHHHHHc
Q psy471           46 RLRKSFSPRCCHHSPRLFQLLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAY  125 (211)
Q Consensus        46 ~~~k~~speel~~~~~~a~iL~~L~~~a~~~~g~~~~~vVItVPa~f~~~qR~al~~Aa~~aGl~~~~lv~EP~AAAl~y  125 (211)
                      ..++.|+|++|     ++++|++|+..|..++|.++.++|||||++|++.||+++++||.+||+++++||+||+|||++|
T Consensus       111 ~~~~~~speei-----~a~iL~~lk~~ae~~lg~~v~~aVITVPa~f~~~qR~a~~~Aa~~AGl~v~~li~EPtAAAlay  185 (595)
T PRK01433        111 FANKQLRIPEI-----AAEIFIYLKNQAEEQLKTNITKAVITVPAHFNDAARGEVMLAAKIAGFEVLRLIAEPTAAAYAY  185 (595)
T ss_pred             ECCEEEcHHHH-----HHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecCcHHHHHHH
Confidence            34688999999     9999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCCCCCceEEEeecCCCceEEEEEeccc
Q psy471          126 GLDKNLKGERNVKLPKMLEPLLVLTLRKKKK  156 (211)
Q Consensus       126 ~~~~~~~~~~~vLV~D~GggT~Dvsv~~~~~  156 (211)
                      ++.+.  ..+++|||||||||||+||+++.+
T Consensus       186 ~~~~~--~~~~vlV~DlGGGT~DvSi~~~~~  214 (595)
T PRK01433        186 GLNKN--QKGCYLVYDLGGGTFDVSILNIQE  214 (595)
T ss_pred             hcccC--CCCEEEEEECCCCcEEEEEEEEeC
Confidence            98764  567899999999999999999864

>PRK05183 hscA chaperone protein HscA; Provisional

Probab=99.93  E-value=2.3e-25  Score=213.74  Aligned_cols=135  Identities=39%  Similarity=0.519  Sum_probs=113.6

Q ss_pred             hhhcccCcccchhhHhhhhhcCCCC---------Cccccee----------cceeeccccCCCchHHHHHHHHHHHHHHH
Q psy471           15 LRQNQPCQATDNNIGYLARSFEGPE---------WDYGHVR----------LRKSFSPRCCHHSPRLFQLLTKMKETAEA   75 (211)
Q Consensus        15 ~a~~~~~~~p~n~~~~l~r~~~g~~---------~~~~~~~----------~~k~~speel~~~~~~a~iL~~L~~~a~~   75 (211)
                      .|.++...+|.+.+..++|.++.+.         +++....          .+..|+|++|     ++++|++|++.|..
T Consensus        69 ~A~~~~~~~p~~ti~~~KrliG~~~~d~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~ei-----~a~iL~~lk~~ae~  143 (616)
T PRK05183         69 EARANAAQDPKNTISSVKRFMGRSLADIQQRYPHLPYQFVASENGMPLIRTAQGLKSPVEV-----SAEILKALRQRAEE  143 (616)
T ss_pred             HHHHhhHhCchhhHHHHHHHhCCCchhhhhhhhcCCeEEEecCCCceEEEecCCeEcHHHH-----HHHHHHHHHHHHHH
Confidence            3444555678888777887775331         1222211          2347899999     99999999999999


Q ss_pred             hhccccceeeEccCCCccHHHHHHHHHHHHHhCCceeEEeechhHHHHHcccccCCCCCceEEEeecCCCceEEEEEecc
Q psy471           76 YLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVKLPKMLEPLLVLTLRKKK  155 (211)
Q Consensus        76 ~~g~~~~~vVItVPa~f~~~qR~al~~Aa~~aGl~~~~lv~EP~AAAl~y~~~~~~~~~~~vLV~D~GggT~Dvsv~~~~  155 (211)
                      ++|.++..+|||||++|++.||+++++||++||+++++||+||+|||++|++.+.  ..+++|||||||||||+||+++.
T Consensus       144 ~lg~~v~~~VITVPa~f~~~qR~a~~~Aa~~AGl~v~~li~EPtAAAlay~~~~~--~~~~vlV~DlGGGT~DvSv~~~~  221 (616)
T PRK05183        144 TLGGELDGAVITVPAYFDDAQRQATKDAARLAGLNVLRLLNEPTAAAIAYGLDSG--QEGVIAVYDLGGGTFDISILRLS  221 (616)
T ss_pred             HhCCCcceEEEEECCCCCHHHHHHHHHHHHHcCCCeEEEecchHHHHHHhhcccC--CCCEEEEEECCCCeEEEEEEEee
Confidence            9999999999999999999999999999999999999999999999999998765  57899999999999999999986


Q ss_pred             c
Q psy471          156 K  156 (211)
Q Consensus       156 ~  156 (211)
                      +
T Consensus       222 ~  222 (616)
T PRK05183        222 K  222 (616)
T ss_pred             C
Confidence            4

>CHL00094 dnaK heat shock protein 70

Probab=99.92  E-value=3.8e-25  Score=212.30  Aligned_cols=144  Identities=42%  Similarity=0.564  Sum_probs=120.7

Q ss_pred             cceehhhh------HHhhhcccCcccchhhHhhhhhcCCCC---------Ccccce------------ecceeeccccCC
Q psy471            5 LTIVSLED------VKLRQNQPCQATDNNIGYLARSFEGPE---------WDYGHV------------RLRKSFSPRCCH   57 (211)
Q Consensus         5 ~~~~s~~~------~~~a~~~~~~~p~n~~~~l~r~~~g~~---------~~~~~~------------~~~k~~speel~   57 (211)
                      .++++|..      ...|.++...+|.|.+..++|.++.+.         +++...            ..++.|+|++| 
T Consensus        37 PS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~~~~~~~~~~~~~v~~~~~g~i~~~~~~~~~~~s~eei-  115 (621)
T CHL00094         37 PSIVAYTKKGDLLVGQIAKRQAVINPENTFYSVKRFIGRKFSEISEEAKQVSYKVKTDSNGNIKIECPALNKDFSPEEI-  115 (621)
T ss_pred             ceEEEEcCCCCEEECHHHHHhHHhCccceehhhHHhcCCChHHHHhhhhcCCeEEEECCCCCEEEEEecCCeEEcHHHH-
Confidence            35666642      234666666788888888888885442         233221            13678999999 


Q ss_pred             CchHHHHHHHHHHHHHHHhhccccceeeEccCCCccHHHHHHHHHHHHHhCCceeEEeechhHHHHHcccccCCCCCceE
Q psy471           58 HSPRLFQLLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNV  137 (211)
Q Consensus        58 ~~~~~a~iL~~L~~~a~~~~g~~~~~vVItVPa~f~~~qR~al~~Aa~~aGl~~~~lv~EP~AAAl~y~~~~~~~~~~~v  137 (211)
                          ++++|++|+..|+.++|.++..+|||||++|++.||+++++||++||+++++||+||+|||++|++...  .+.++
T Consensus       116 ----~a~iL~~l~~~ae~~lg~~v~~~VItVPa~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAAlay~~~~~--~~~~v  189 (621)
T CHL00094        116 ----SAQVLRKLVEDASKYLGETVTQAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAASLAYGLDKK--NNETI  189 (621)
T ss_pred             ----HHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHHHHcCCceEEEeccHHHHHHHhccccC--CCCEE
Confidence                999999999999999999999999999999999999999999999999999999999999999998765  56789


Q ss_pred             EEeecCCCceEEEEEecc
Q psy471          138 KLPKMLEPLLVLTLRKKK  155 (211)
Q Consensus       138 LV~D~GggT~Dvsv~~~~  155 (211)
                      |||||||||||+||+++.
T Consensus       190 lV~DlGgGT~DvSv~~~~  207 (621)
T CHL00094        190 LVFDLGGGTFDVSILEVG  207 (621)
T ss_pred             EEEEcCCCeEEEEEEEEc
Confidence            999999999999999875

>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins

Probab=99.91  E-value=3.5e-24  Score=203.08  Aligned_cols=102  Identities=46%  Similarity=0.677  Sum_probs=93.3

Q ss_pred             eeeccccCCCchHHHHHHHHHHHHHHHhhccccceeeEccCCCccHHHHHHHHHHHHHhCCceeEEeechhHHHHHcccc
Q psy471           49 KSFSPRCCHHSPRLFQLLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLD  128 (211)
Q Consensus        49 k~~speel~~~~~~a~iL~~L~~~a~~~~g~~~~~vVItVPa~f~~~qR~al~~Aa~~aGl~~~~lv~EP~AAAl~y~~~  128 (211)
                      +.|+|++|     ++++|++|+..|..+++.++.++|||||++|+..||++++.||..||+++++||+||+|||++|++.
T Consensus       108 ~~~~~~~~-----~~~~l~~l~~~a~~~~~~~~~~~vitVPa~~~~~qr~~~~~Aa~~agl~~~~li~Ep~Aaa~~y~~~  182 (602)
T PF00012_consen  108 KTYSPEEL-----SAMILKYLKEMAEKYLGEKVTDVVITVPAYFTDEQRQALRDAAELAGLNVLRLINEPTAAALAYGLE  182 (602)
T ss_dssp             EEEEHHHH-----HHHHHHHHHHHHHHHHTSBEEEEEEEE-TT--HHHHHHHHHHHHHTT-EEEEEEEHHHHHHHHTTTT
T ss_pred             eeeeeecc-----cccchhhhcccchhhcccccccceeeechhhhhhhhhcccccccccccccceeeccccccccccccc
Confidence            48999999     9999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             cCCCCCceEEEeecCCCceEEEEEeccc
Q psy471          129 KNLKGERNVKLPKMLEPLLVLTLRKKKK  156 (211)
Q Consensus       129 ~~~~~~~~vLV~D~GggT~Dvsv~~~~~  156 (211)
                      +.. .++++|||||||||+|+|++++..
T Consensus       183 ~~~-~~~~vlv~D~Gggt~dvs~~~~~~  209 (602)
T PF00012_consen  183 RSD-KGKTVLVVDFGGGTFDVSVVEFSN  209 (602)
T ss_dssp             SSS-SEEEEEEEEEESSEEEEEEEEEET
T ss_pred             ccc-cccceeccccccceEeeeehhccc
Confidence            774 689999999999999999999864

Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....

>KOG0102|consensus

Probab=99.89  E-value=8.6e-24  Score=195.80  Aligned_cols=137  Identities=46%  Similarity=0.586  Sum_probs=117.2

Q ss_pred             HHhhhcccCcccchhhHhhhhhc----CCCC-----------------CcccceecceeeccccCCCchHHHHHHHHHHH
Q psy471           13 VKLRQNQPCQATDNNIGYLARSF----EGPE-----------------WDYGHVRLRKSFSPRCCHHSPRLFQLLTKMKE   71 (211)
Q Consensus        13 ~~~a~~~~~~~p~n~~~~l~r~~----~g~~-----------------~~~~~~~~~k~~speel~~~~~~a~iL~~L~~   71 (211)
                      +..+.|++..+|.|.+++-+|.+    .++.                 |++-+...+++|+|.++     .+++|.+++.
T Consensus        76 g~~akrqav~n~~ntffatKrligRrf~d~evq~~~k~vpyKiVk~~ngdaw~e~~G~~~spsqi-----g~~vl~kmk~  150 (640)
T KOG0102|consen   76 GMPAKRQAVTNPENTFFATKRLIGRRFDDPEVQKDIKQVPYKIVKASNGDAWVEARGKQYSPSQI-----GAFVLMKMKE  150 (640)
T ss_pred             cchhhhhhccCCCceEEEehhhhhhhccCHHHHHHHHhCCcceEEccCCcEEEEeCCeEecHHHH-----HHHHHHHHHH
Confidence            34677888888888765544444    3221                 12222235999999999     9999999999


Q ss_pred             HHHHhhccccceeeEccCCCccHHHHHHHHHHHHHhCCceeEEeechhHHHHHcccccCCCCCceEEEeecCCCceEEEE
Q psy471           72 TAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVKLPKMLEPLLVLTL  151 (211)
Q Consensus        72 ~a~~~~g~~~~~vVItVPa~f~~~qR~al~~Aa~~aGl~~~~lv~EP~AAAl~y~~~~~~~~~~~vLV~D~GggT~Dvsv  151 (211)
                      +|..+++..+...|+|||+||++.||+++++|.+++|++++|++|+|+|||++|+++++  .+..++|||+||||||++|
T Consensus       151 tae~yl~~~v~~avvtvpAyfndsqRqaTkdag~iagl~vlrvineptaaalaygld~k--~~g~iaV~dLgggtfdisi  228 (640)
T KOG0102|consen  151 TAEAYLGKKVKNAVITVPAYFNDSQRQATKDAGQIAGLNVLRVINEPTAAALAYGLDKK--EDGVIAVFDLGGGTFDISI  228 (640)
T ss_pred             HHHHHcCchhhheeeccHHHHhHHHHHHhHhhhhhccceeeccCCccchhHHhhccccc--CCCceEEEEcCCceeeeee
Confidence            99999999999999999999999999999999999999999999999999999999988  4899999999999999999


Q ss_pred             Eeccc
Q psy471          152 RKKKK  156 (211)
Q Consensus       152 ~~~~~  156 (211)
                      +.+.+
T Consensus       229 lei~~  233 (640)
T KOG0102|consen  229 LEIED  233 (640)
T ss_pred             ehhcc
Confidence            87654

>PRK11678 putative chaperone; Provisional

Probab=99.89  E-value=5.1e-23  Score=191.16  Aligned_cols=131  Identities=19%  Similarity=0.160  Sum_probs=107.8

Q ss_pred             HhhhcccCcccchh--hHhhhhhcCCCCCcccceecceeeccccCCCchHHHHHHHHHHHHHHHhhccccceeeEccCCC
Q psy471           14 KLRQNQPCQATDNN--IGYLARSFEGPEWDYGHVRLRKSFSPRCCHHSPRLFQLLTKMKETAEAYLGHSVRDAVITVPAY   91 (211)
Q Consensus        14 ~~a~~~~~~~p~n~--~~~l~r~~~g~~~~~~~~~~~k~~speel~~~~~~a~iL~~L~~~a~~~~g~~~~~vVItVPa~   91 (211)
                      ..+......+|.+.  +..+||.++.+.+..     .....+++|     ++++|++|++.|+.++|.++.++|||||++
T Consensus        90 ~~A~~~~~~~p~~~r~i~s~Kr~lg~~~~~~-----~~~~~~e~l-----~a~iL~~lk~~ae~~~g~~v~~~VItvPa~  159 (450)
T PRK11678         90 LAALAQYLEDPEEVYFVKSPKSFLGASGLKP-----QQVALFEDL-----VCAMMLHIKQQAEAQLQAAITQAVIGRPVN  159 (450)
T ss_pred             HHHHHhhccCCCCceEEecchhhhccCCCCc-----cceeCHHHH-----HHHHHHHHHHHHHHHhCCCCCcEEEEECCc
Confidence            33444555566665  456777776443321     233458899     999999999999999999999999999999


Q ss_pred             cc-----HHHHHH---HHHHHHHhCCceeEEeechhHHHHHcccccCCCCCceEEEeecCCCceEEEEEeccc
Q psy471           92 FN-----DAQRQA---TKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVKLPKMLEPLLVLTLRKKKK  156 (211)
Q Consensus        92 f~-----~~qR~a---l~~Aa~~aGl~~~~lv~EP~AAAl~y~~~~~~~~~~~vLV~D~GggT~Dvsv~~~~~  156 (211)
                      |+     ..||++   +++||..||+++++|++||+|||++|+....  .++++|||||||||+|+||+++.+
T Consensus       160 F~~~~~~~~qr~a~~~l~~Aa~~AG~~~v~li~EPtAAAl~y~~~~~--~~~~vlV~D~GGGT~D~Svv~~~~  230 (450)
T PRK11678        160 FQGLGGEEANRQAEGILERAAKRAGFKDVEFQFEPVAAGLDFEATLT--EEKRVLVVDIGGGTTDCSMLLMGP  230 (450)
T ss_pred             cccCCcchhHHHHHHHHHHHHHHcCCCEEEEEcCHHHHHHHhccccC--CCCeEEEEEeCCCeEEEEEEEecC
Confidence            98     778765   7999999999999999999999999997644  688999999999999999999865

>KOG0101|consensus

Probab=99.87  E-value=2e-22  Score=191.04  Aligned_cols=138  Identities=49%  Similarity=0.688  Sum_probs=117.1

Q ss_pred             HhhhcccCcccchhhHhhhhhcC----CC-------CCccccee--------------cceeeccccCCCchHHHHHHHH
Q psy471           14 KLRQNQPCQATDNNIGYLARSFE----GP-------EWDYGHVR--------------LRKSFSPRCCHHSPRLFQLLTK   68 (211)
Q Consensus        14 ~~a~~~~~~~p~n~~~~l~r~~~----g~-------~~~~~~~~--------------~~k~~speel~~~~~~a~iL~~   68 (211)
                      ..+..+...+|.|.++-.+|.++    ++       .|++....              ..+.|+|+++     .+++|.+
T Consensus        56 ~~a~~qv~~np~ntv~~~krliGr~f~d~~v~~~~k~~pf~V~~~~~~~~~i~~~~~~~~~~f~peei-----ss~~L~k  130 (620)
T KOG0101|consen   56 DAAKNQVARNPDNTVFDAKRLIGRFFDDPEVQSDMKLWPFKVISDQGGKPKIQVTYKGETKSFNPEEI-----SSMVLTK  130 (620)
T ss_pred             hhhhhhhhcCCcceeeehhhhcCccccchhhHhHhhcCCcccccccCCcceEEecccccceeeeeeee-----eehhccc
Confidence            44555666777776544444442    22       24433331              2588999999     9999999


Q ss_pred             HHHHHHHhhccccceeeEccCCCccHHHHHHHHHHHHHhCCceeEEeechhHHHHHcccccCCCCCceEEEeecCCCceE
Q psy471           69 MKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVKLPKMLEPLLV  148 (211)
Q Consensus        69 L~~~a~~~~g~~~~~vVItVPa~f~~~qR~al~~Aa~~aGl~~~~lv~EP~AAAl~y~~~~~~~~~~~vLV~D~GggT~D  148 (211)
                      ++..|..++|..+.++|+|||++|+..||+++..|+.+||++++|+|+||+||||+|++.+......+|||+|+||||||
T Consensus       131 lke~Ae~~Lg~~v~~aviTVPa~F~~~Qr~at~~A~~iaGl~vlrii~EPtAaalAygl~k~~~~~~~VlI~DlGggtfd  210 (620)
T KOG0101|consen  131 LKETAEAYLGKTVKKAVVTVPAYFNDSQRAATKDAALIAGLNVLRIINEPTAAALAYGLDKKVLGERNVLIFDLGGGTFD  210 (620)
T ss_pred             cHHHHHHHhcCceeeEEEEecCCcCHHHHHHHHHHHHhcCCceeeeecchHHHHHHhhccccccceeeEEEEEcCCCcee
Confidence            99999999999999999999999999999999999999999999999999999999999988778999999999999999


Q ss_pred             EEEEeccc
Q psy471          149 LTLRKKKK  156 (211)
Q Consensus       149 vsv~~~~~  156 (211)
                      +|++.+.+
T Consensus       211 vs~l~i~g  218 (620)
T KOG0101|consen  211 VSVLSLEG  218 (620)
T ss_pred             eeeEEecc
Confidence            99999876

>KOG0104|consensus

Probab=99.83  E-value=9.2e-21  Score=180.64  Aligned_cols=108  Identities=33%  Similarity=0.447  Sum_probs=101.2

Q ss_pred             eeeccccCCCchHHHHHHHHHHHHHHHhhccccceeeEccCCCccHHHHHHHHHHHHHhCCceeEEeechhHHHHHcccc
Q psy471           49 KSFSPRCCHHSPRLFQLLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLD  128 (211)
Q Consensus        49 k~~speel~~~~~~a~iL~~L~~~a~~~~g~~~~~vVItVPa~f~~~qR~al~~Aa~~aGl~~~~lv~EP~AAAl~y~~~  128 (211)
                      ..|++++|     ++|+|.+.+..|+.+..+++..+|||||.||++++|+++.+||++||++++.|||+-+|||+.|++.
T Consensus       131 ~~ysvEel-----lAMil~~a~~~ae~~a~~~Ikd~ViTVP~~F~qaeR~all~Aa~iagl~vLqLind~~a~Al~ygv~  205 (902)
T KOG0104|consen  131 EEYSVEEL-----LAMILQYAKSLAEEYAKQPIKDMVITVPPFFNQAERRALLQAAQIAGLNVLQLINDGTAVALNYGVF  205 (902)
T ss_pred             cccCHHHH-----HHHHHHHHHHHHHHHHhcchhheEEeCCcccCHHHHHHHHHHHHhcCchhhhhhccchHHHhhhhhh
Confidence            78999999     9999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCC---CCCceEEEeecCCCceEEEEEeccchhhhh
Q psy471          129 KNL---KGERNVKLPKMLEPLLVLTLRKKKKKKKKK  161 (211)
Q Consensus       129 ~~~---~~~~~vLV~D~GggT~Dvsv~~~~~~~eee  161 (211)
                      ++.   ..+++++|||||+|++.++|+++.--+.++
T Consensus       206 rRk~i~~~~q~~i~YDMGs~sT~Ativsy~~v~~k~  241 (902)
T KOG0104|consen  206 RRKEINETPQHYIFYDMGSGSTSATIVSYQLVKTKE  241 (902)
T ss_pred             ccccCCCCceEEEEEecCCCceeEEEEEEEeecccc
Confidence            753   389999999999999999999987755443

>KOG0103|consensus

Probab=99.83  E-value=1.2e-20  Score=178.87  Aligned_cols=107  Identities=43%  Similarity=0.582  Sum_probs=101.0

Q ss_pred             cceeeccccCCCchHHHHHHHHHHHHHHHhhccccceeeEccCCCccHHHHHHHHHHHHHhCCceeEEeechhHHHHHcc
Q psy471           47 LRKSFSPRCCHHSPRLFQLLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYG  126 (211)
Q Consensus        47 ~~k~~speel~~~~~~a~iL~~L~~~a~~~~g~~~~~vVItVPa~f~~~qR~al~~Aa~~aGl~~~~lv~EP~AAAl~y~  126 (211)
                      ..+.|+|+||     ++|+|.+|+.+|++.+..++..|||+||+||+..||+++.+||.+||++++||+++.+|+|++||
T Consensus       108 e~~~ft~~Qv-----~Am~l~klk~~ae~~l~~~v~DcvIavP~~FTd~qRravldAA~iagLn~lrLmnd~TA~Al~yg  182 (727)
T KOG0103|consen  108 EKHPFTPEQV-----LAMLLTKLKATAEKNLKSPVSDCVIAVPSYFTDSQRRAVLDAARIAGLNPLRLMNDTTATALAYG  182 (727)
T ss_pred             CCCCCChHHH-----HHHHHHHHHHHHHHhcCCCCCCeeEeccccccHHHHHHHHhHHhhcCccceeeeecchHhHhhcc
Confidence            4788999999     99999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCCC-----CCceEEEeecCCCceEEEEEeccchh
Q psy471          127 LDKNLK-----GERNVKLPKMLEPLLVLTLRKKKKKK  158 (211)
Q Consensus       127 ~~~~~~-----~~~~vLV~D~GggT~Dvsv~~~~~~~  158 (211)
                      +.+..-     ++++|+++|||+.++.+|++.+++-+
T Consensus       183 iyKtDLP~~~ekpr~v~fvD~GHS~~q~si~aF~kG~  219 (727)
T KOG0103|consen  183 IYKTDLPENEEKPRNVVFVDIGHSSYQVSIAAFTKGK  219 (727)
T ss_pred             cccccCCCcccCcceEEEEecccccceeeeeeeccCc
Confidence            998742     68999999999999999999988744

>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein

Probab=99.67  E-value=2.5e-16  Score=135.21  Aligned_cols=95  Identities=20%  Similarity=0.249  Sum_probs=85.5

Q ss_pred             ceeeccccCCCchHHHHHHHHHHHHHHHhhccccceeeEccCCCccHHHHHHHHHHHHHhCCceeEEeechhHHHHHccc
Q psy471           48 RKSFSPRCCHHSPRLFQLLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGL  127 (211)
Q Consensus        48 ~k~~speel~~~~~~a~iL~~L~~~a~~~~g~~~~~vVItVPa~f~~~qR~al~~Aa~~aGl~~~~lv~EP~AAAl~y~~  127 (211)
                      +..+.-.+.     ++++|++|++.++.++|.++.++|||||++|++.||+++.+|++.+|++++.++++|.|||++|++
T Consensus        33 ~g~I~d~~~-----~~~~l~~l~~~a~~~~g~~~~~vvisVP~~~~~~~r~a~~~a~~~aGl~~~~li~ep~Aaa~~~~~  107 (239)
T TIGR02529        33 DGIVVDFLG-----AVEIVRRLKDTLEQKLGIELTHAATAIPPGTIEGDPKVIVNVIESAGIEVLHVLDEPTAAAAVLQI  107 (239)
T ss_pred             CCeEEEhHH-----HHHHHHHHHHHHHHHhCCCcCcEEEEECCCCCcccHHHHHHHHHHcCCceEEEeehHHHHHHHhcC
Confidence            344555566     899999999999988998899999999999999999999999999999999999999999999875


Q ss_pred             ccCCCCCceEEEeecCCCceEEEEEec
Q psy471          128 DKNLKGERNVKLPKMLEPLLVLTLRKK  154 (211)
Q Consensus       128 ~~~~~~~~~vLV~D~GggT~Dvsv~~~  154 (211)
                      .       ..+|+||||||||+++++.
T Consensus       108 ~-------~~~vvDiGggtt~i~i~~~  127 (239)
T TIGR02529       108 K-------NGAVVDVGGGTTGISILKK  127 (239)
T ss_pred             C-------CcEEEEeCCCcEEEEEEEC
Confidence            3       2599999999999999864

>PRK13929 rod-share determining protein MreBH; Provisional

Probab=99.65  E-value=7.5e-16  Score=137.94  Aligned_cols=92  Identities=20%  Similarity=0.234  Sum_probs=83.5

Q ss_pred             HHHHHHHHHHHHHHhhccccc--eeeEccCCCccHHHHHHHHHHHHHhCCceeEEeechhHHHHHcccccCCCCCceEEE
Q psy471           62 LFQLLTKMKETAEAYLGHSVR--DAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVKL  139 (211)
Q Consensus        62 ~a~iL~~L~~~a~~~~g~~~~--~vVItVPa~f~~~qR~al~~Aa~~aGl~~~~lv~EP~AAAl~y~~~~~~~~~~~vLV  139 (211)
                      ++++|++++..+...++..+.  .+|||||++|+..||+++.+|+..+|+++++++++|+|||++|++...  .+..+||
T Consensus        77 ~~~~l~~~~~~~~~~l~~~~~~~~vvitvP~~~~~~~R~~l~~a~~~ag~~~~~li~ep~Aaa~~~g~~~~--~~~~~lv  154 (335)
T PRK13929         77 TTDLLKQIMKKAGKNIGMTFRKPNVVVCTPSGSTAVERRAISDAVKNCGAKNVHLIEEPVAAAIGADLPVD--EPVANVV  154 (335)
T ss_pred             HHHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCHHHHHHHHHHHHHcCCCeeEeecCHHHHHHhcCCCcC--CCceEEE
Confidence            999999999998877776553  799999999999999999999999999999999999999999988654  5678999


Q ss_pred             eecCCCceEEEEEecc
Q psy471          140 PKMLEPLLVLTLRKKK  155 (211)
Q Consensus       140 ~D~GggT~Dvsv~~~~  155 (211)
                      +|+|+||+|+++++..
T Consensus       155 vDiG~gtt~v~vi~~~  170 (335)
T PRK13929        155 VDIGGGTTEVAIISFG  170 (335)
T ss_pred             EEeCCCeEEEEEEEeC
Confidence            9999999999999654

>PRK13928 rod shape-determining protein Mbl; Provisional

Probab=99.63  E-value=1.7e-15  Score=135.28  Aligned_cols=99  Identities=17%  Similarity=0.159  Sum_probs=82.3

Q ss_pred             eeccccCCCchHHHHHHHHHHHHHHHhhccccceeeEccCCCccHHHHHHHHHHHHHhCCceeEEeechhHHHHHccccc
Q psy471           50 SFSPRCCHHSPRLFQLLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDK  129 (211)
Q Consensus        50 ~~speel~~~~~~a~iL~~L~~~a~~~~g~~~~~vVItVPa~f~~~qR~al~~Aa~~aGl~~~~lv~EP~AAAl~y~~~~  129 (211)
                      .+...++     +..+|+++...+....+.....+|||||++|+..||+++++|++.+|++.+.++++|+|||++|++..
T Consensus        69 ~i~d~~~-----~~~~l~~~~~~~~~~~~~~~p~~vitvP~~~~~~~r~~~~~a~~~ag~~~~~li~ep~Aaa~~~g~~~  143 (336)
T PRK13928         69 VIADYDV-----TEKMLKYFINKACGKRFFSKPRIMICIPTGITSVEKRAVREAAEQAGAKKVYLIEEPLAAAIGAGLDI  143 (336)
T ss_pred             eEecHHH-----HHHHHHHHHHHHhccCCCCCCeEEEEeCCCCCHHHHHHHHHHHHHcCCCceEecccHHHHHHHcCCcc
Confidence            4455566     78888888865542222233479999999999999999999999999999999999999999999865


Q ss_pred             CCCCCceEEEeecCCCceEEEEEecc
Q psy471          130 NLKGERNVKLPKMLEPLLVLTLRKKK  155 (211)
Q Consensus       130 ~~~~~~~vLV~D~GggT~Dvsv~~~~  155 (211)
                      .  .+..++||||||||||+++++..
T Consensus       144 ~--~~~~~lVvDiGggttdvsvv~~g  167 (336)
T PRK13928        144 S--QPSGNMVVDIGGGTTDIAVLSLG  167 (336)
T ss_pred             c--CCCeEEEEEeCCCeEEEEEEEeC
Confidence            4  56779999999999999999865

>TIGR00904 mreB cell shape determining protein, MreB/Mrl family

Probab=99.55  E-value=3.6e-14  Score=126.54  Aligned_cols=93  Identities=17%  Similarity=0.179  Sum_probs=76.4

Q ss_pred             HHHHHHHHHHHHHHhhccccceeeEccCCCccHHHHHHHHHHHHHhCCceeEEeechhHHHHHcccccCCCCCceEEEee
Q psy471           62 LFQLLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVKLPK  141 (211)
Q Consensus        62 ~a~iL~~L~~~a~~~~g~~~~~vVItVPa~f~~~qR~al~~Aa~~aGl~~~~lv~EP~AAAl~y~~~~~~~~~~~vLV~D  141 (211)
                      +..+++++........+.....+|+|||++|+..||++++.|+..+|++.+.++++|+|||++|++...  .+..++|+|
T Consensus        79 ~~~~~~~~l~~~~~~~~~~~~~~vitvP~~~~~~~r~~~~~~~~~ag~~~~~li~ep~aaa~~~g~~~~--~~~~~lVvD  156 (333)
T TIGR00904        79 TEKMIKYFIKQVHSRKSFFKPRIVICVPSGITPVERRAVKESALSAGAREVYLIEEPMAAAIGAGLPVE--EPTGSMVVD  156 (333)
T ss_pred             HHHHHHHHHHHHhcccccCCCcEEEEeCCCCCHHHHHHHHHHHHHcCCCeEEEecCHHHHHHhcCCccc--CCceEEEEE
Confidence            555666666554432222223799999999999999999999999999999999999999999987654  567899999


Q ss_pred             cCCCceEEEEEeccc
Q psy471          142 MLEPLLVLTLRKKKK  156 (211)
Q Consensus       142 ~GggT~Dvsv~~~~~  156 (211)
                      |||||||+++++..+
T Consensus       157 iG~gttdvs~v~~~~  171 (333)
T TIGR00904       157 IGGGTTEVAVISLGG  171 (333)
T ss_pred             cCCCeEEEEEEEeCC
Confidence            999999999997543

A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.

>PRK13927 rod shape-determining protein MreB; Provisional

Probab=99.54  E-value=4.1e-14  Score=125.88  Aligned_cols=91  Identities=18%  Similarity=0.215  Sum_probs=75.6

Q ss_pred             HHHHHHHHHHHHHHhhccccceeeEccCCCccHHHHHHHHHHHHHhCCceeEEeechhHHHHHcccccCCCCCceEEEee
Q psy471           62 LFQLLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVKLPK  141 (211)
Q Consensus        62 ~a~iL~~L~~~a~~~~g~~~~~vVItVPa~f~~~qR~al~~Aa~~aGl~~~~lv~EP~AAAl~y~~~~~~~~~~~vLV~D  141 (211)
                      +..+++++......... ....+|+|+|++|+..||++++.|+..+|++.+.++++|+|||++|++...  ....++|+|
T Consensus        78 ~~~ll~~~~~~~~~~~~-~~~~~vi~vP~~~~~~~r~~~~~a~~~ag~~~~~li~ep~aaa~~~g~~~~--~~~~~lvvD  154 (334)
T PRK13927         78 TEKMLKYFIKKVHKNFR-PSPRVVICVPSGITEVERRAVRESALGAGAREVYLIEEPMAAAIGAGLPVT--EPTGSMVVD  154 (334)
T ss_pred             HHHHHHHHHHHHhhccC-CCCcEEEEeCCCCCHHHHHHHHHHHHHcCCCeeccCCChHHHHHHcCCccc--CCCeEEEEE
Confidence            55666666655443321 224799999999999999999999999999999999999999999988654  566789999


Q ss_pred             cCCCceEEEEEecc
Q psy471          142 MLEPLLVLTLRKKK  155 (211)
Q Consensus       142 ~GggT~Dvsv~~~~  155 (211)
                      +||||||+++++..
T Consensus       155 iGggttdvs~v~~~  168 (334)
T PRK13927        155 IGGGTTEVAVISLG  168 (334)
T ss_pred             eCCCeEEEEEEecC
Confidence            99999999999654

>PRK13930 rod shape-determining protein MreB; Provisional

Probab=99.50  E-value=1.5e-13  Score=122.12  Aligned_cols=92  Identities=20%  Similarity=0.183  Sum_probs=78.7

Q ss_pred             HHHHHHHHHHHHHHhhccccceeeEccCCCccHHHHHHHHHHHHHhCCceeEEeechhHHHHHcccccCCCCCceEEEee
Q psy471           62 LFQLLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVKLPK  141 (211)
Q Consensus        62 ~a~iL~~L~~~a~~~~g~~~~~vVItVPa~f~~~qR~al~~Aa~~aGl~~~~lv~EP~AAAl~y~~~~~~~~~~~vLV~D  141 (211)
                      +..+++++........+.....+|+|+|++|+..+|+++..|+..+|++.+.++++|+|||++|++...  ....+||+|
T Consensus        81 ~e~ll~~~~~~~~~~~~~~~~~vvit~P~~~~~~~r~~~~~~~e~~g~~~~~lv~ep~AAa~a~g~~~~--~~~~~lVvD  158 (335)
T PRK13930         81 TEAMLRYFIKKARGRRFFRKPRIVICVPSGITEVERRAVREAAEHAGAREVYLIEEPMAAAIGAGLPVT--EPVGNMVVD  158 (335)
T ss_pred             HHHHHHHHHHHHhhcccCCCCcEEEEECCCCCHHHHHHHHHHHHHcCCCeEEecccHHHHHHhcCCCcC--CCCceEEEE
Confidence            777888888665544344467899999999999999999999999999999999999999999987654  455689999


Q ss_pred             cCCCceEEEEEecc
Q psy471          142 MLEPLLVLTLRKKK  155 (211)
Q Consensus       142 ~GggT~Dvsv~~~~  155 (211)
                      +||||||++++...
T Consensus       159 iG~gttdvs~v~~g  172 (335)
T PRK13930        159 IGGGTTEVAVISLG  172 (335)
T ss_pred             eCCCeEEEEEEEeC
Confidence            99999999998743

>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes

Probab=99.46  E-value=2e-13  Score=122.41  Aligned_cols=102  Identities=21%  Similarity=0.172  Sum_probs=78.0

Q ss_pred             ceeeccccCCCchHHHHHHHHHHHHHHHhhccccceeeEccCCCccHHHHHHHHHHHHHhCCceeEEeechhHHHHHccc
Q psy471           48 RKSFSPRCCHHSPRLFQLLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGL  127 (211)
Q Consensus        48 ~k~~speel~~~~~~a~iL~~L~~~a~~~~g~~~~~vVItVPa~f~~~qR~al~~Aa~~aGl~~~~lv~EP~AAAl~y~~  127 (211)
                      +..+.-.++     +..+|+++.+.+.......-..++|+||+..+..+|+++.+|+..+|.+.+.|+++|.|||+..++
T Consensus        65 ~GvI~D~~~-----~~~~l~~~l~k~~~~~~~~~p~vvi~vP~~~T~verrA~~~a~~~aGa~~V~li~ep~AaAiGaGl  139 (326)
T PF06723_consen   65 DGVIADYEA-----AEEMLRYFLKKALGRRSFFRPRVVICVPSGITEVERRALIDAARQAGARKVYLIEEPIAAAIGAGL  139 (326)
T ss_dssp             TTEESSHHH-----HHHHHHHHHHHHHTSS-SS--EEEEEE-SS--HHHHHHHHHHHHHTT-SEEEEEEHHHHHHHHTT-
T ss_pred             CCcccCHHH-----HHHHHHHHHHHhccCCCCCCCeEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEecchHHHHhcCCC
Confidence            444444556     888999999988764333456899999999999999999999999999999999999999999998


Q ss_pred             ccCCCCCceEEEeecCCCceEEEEEeccc
Q psy471          128 DKNLKGERNVKLPKMLEPLLVLTLRKKKK  156 (211)
Q Consensus       128 ~~~~~~~~~vLV~D~GggT~Dvsv~~~~~  156 (211)
                      ...  .+...||+|+||||||++++++.+
T Consensus       140 ~i~--~~~g~miVDIG~GtTdiavislgg  166 (326)
T PF06723_consen  140 DIF--EPRGSMIVDIGGGTTDIAVISLGG  166 (326)
T ss_dssp             -TT--SSS-EEEEEE-SS-EEEEEEETTE
T ss_pred             CCC--CCCceEEEEECCCeEEEEEEECCC
Confidence            876  789999999999999999998754

In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.

>PRK15080 ethanolamine utilization protein EutJ; Provisional

Probab=99.37  E-value=3.5e-12  Score=111.17  Aligned_cols=86  Identities=26%  Similarity=0.371  Sum_probs=79.2

Q ss_pred             HHHHHHHHHHHHHHhhccccceeeEccCCCccHHHHHHHHHHHHHhCCceeEEeechhHHHHHcccccCCCCCceEEEee
Q psy471           62 LFQLLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVKLPK  141 (211)
Q Consensus        62 ~a~iL~~L~~~a~~~~g~~~~~vVItVPa~f~~~qR~al~~Aa~~aGl~~~~lv~EP~AAAl~y~~~~~~~~~~~vLV~D  141 (211)
                      +...|+++++.++.++|.++..++++||++|+..+|.++.+|++.+|+++..++++|.|++.+|.+.       ..+|+|
T Consensus        69 a~~~i~~~~~~ae~~~g~~i~~v~~~vp~~~~~~~~~~~~~~~~~aGl~~~~ii~e~~A~a~~~~~~-------~~~vvD  141 (267)
T PRK15080         69 AVTIVRRLKATLEEKLGRELTHAATAIPPGTSEGDPRAIINVVESAGLEVTHVLDEPTAAAAVLGID-------NGAVVD  141 (267)
T ss_pred             HHHHHHHHHHHHHHHhCCCcCeEEEEeCCCCCchhHHHHHHHHHHcCCceEEEechHHHHHHHhCCC-------CcEEEE
Confidence            8889999999999998988999999999999999999999999999999999999999999988653       258999


Q ss_pred             cCCCceEEEEEec
Q psy471          142 MLEPLLVLTLRKK  154 (211)
Q Consensus       142 ~GggT~Dvsv~~~  154 (211)
                      ||||||++++++-
T Consensus       142 IGggtt~i~v~~~  154 (267)
T PRK15080        142 IGGGTTGISILKD  154 (267)
T ss_pred             eCCCcEEEEEEEC
Confidence            9999999999863

>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning]

Probab=99.34  E-value=2.6e-12  Score=113.97  Aligned_cols=122  Identities=18%  Similarity=0.117  Sum_probs=95.3

Q ss_pred             hHhhhhhcCCCCCcc---cceecceeeccccCCCchHHHHHHHHHHHHHHHhhc-cccceeeEccCCCccHHHHHHHHHH
Q psy471           28 IGYLARSFEGPEWDY---GHVRLRKSFSPRCCHHSPRLFQLLTKMKETAEAYLG-HSVRDAVITVPAYFNDAQRQATKDA  103 (211)
Q Consensus        28 ~~~l~r~~~g~~~~~---~~~~~~k~~speel~~~~~~a~iL~~L~~~a~~~~g-~~~~~vVItVPa~f~~~qR~al~~A  103 (211)
                      +..-.|.|.|+....   -....+..+.-.++     +..+|+++.+.+....+ .+...++++||...++..|+++++|
T Consensus        49 VG~eAK~MlGrTP~ni~aiRPmkdGVIAd~~~-----te~ml~~fik~~~~~~~~~~~prI~i~vP~g~T~VErrAi~ea  123 (342)
T COG1077          49 VGEEAKQMLGRTPGNIVAIRPMKDGVIADFEV-----TELMLKYFIKKVHKNGSSFPKPRIVICVPSGITDVERRAIKEA  123 (342)
T ss_pred             ehHHHHHHhccCCCCceEEeecCCcEeecHHH-----HHHHHHHHHHHhccCCCCCCCCcEEEEecCCccHHHHHHHHHH
Confidence            344455555654321   11123444555566     88899999998875444 3445799999999999999999999


Q ss_pred             HHHhCCceeEEeechhHHHHHcccccCCCCCceEEEeecCCCceEEEEEeccc
Q psy471          104 GAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVKLPKMLEPLLVLTLRKKKK  156 (211)
Q Consensus       104 a~~aGl~~~~lv~EP~AAAl~y~~~~~~~~~~~vLV~D~GggT~Dvsv~~~~~  156 (211)
                      +..+|.+.+.++.||.|||+..++...  .+..-||+|+||||+|++++++.+
T Consensus       124 ~~~aGa~~V~lieEp~aAAIGaglpi~--ep~G~mvvDIGgGTTevaVISlgg  174 (342)
T COG1077         124 AESAGAREVYLIEEPMAAAIGAGLPIM--EPTGSMVVDIGGGTTEVAVISLGG  174 (342)
T ss_pred             HHhccCceEEEeccHHHHHhcCCCccc--CCCCCEEEEeCCCceeEEEEEecC
Confidence            999999999999999999999988876  667889999999999999988754

>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]

Probab=98.76  E-value=4.5e-09  Score=88.53  Aligned_cols=87  Identities=24%  Similarity=0.332  Sum_probs=78.1

Q ss_pred             HHHHHHHHHHHHHHhhccccceeeEccCCCccHHHHHHHHHHHHHhCCceeEEeechhHHHHHcccccCCCCCceEEEee
Q psy471           62 LFQLLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVKLPK  141 (211)
Q Consensus        62 ~a~iL~~L~~~a~~~~g~~~~~vVItVPa~f~~~qR~al~~Aa~~aGl~~~~lv~EP~AAAl~y~~~~~~~~~~~vLV~D  141 (211)
                      +..+++++++.+++++|.++.+..-++|+.--+...++..+....||+.++.+++||+|||.-.++...       .|+|
T Consensus        74 aveiVrrlkd~lEk~lGi~~tha~taiPPGt~~~~~ri~iNViESAGlevl~vlDEPTAaa~vL~l~dg-------~VVD  146 (277)
T COG4820          74 AVEIVRRLKDTLEKQLGIRFTHAATAIPPGTEQGDPRISINVIESAGLEVLHVLDEPTAAADVLQLDDG-------GVVD  146 (277)
T ss_pred             HHHHHHHHHHHHHHhhCeEeeeccccCCCCccCCCceEEEEeecccCceeeeecCCchhHHHHhccCCC-------cEEE
Confidence            346899999999999999999999999998877788888899999999999999999999988877665       7899


Q ss_pred             cCCCceEEEEEecc
Q psy471          142 MLEPLLVLTLRKKK  155 (211)
Q Consensus       142 ~GggT~Dvsv~~~~  155 (211)
                      +||||+-+||++..
T Consensus       147 iGGGTTGIsi~kkG  160 (277)
T COG4820         147 IGGGTTGISIVKKG  160 (277)
T ss_pred             eCCCcceeEEEEcC
Confidence            99999999998743

>PRK09472 ftsA cell division protein FtsA; Reviewed

Probab=98.43  E-value=5.1e-07  Score=83.50  Aligned_cols=57  Identities=16%  Similarity=0.117  Sum_probs=47.4

Q ss_pred             HHHHHHHHHHHHHhCCceeEEeechhHHHHHcccccCCCCCceEEEeecCCCceEEEEEe
Q psy471           94 DAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVKLPKMLEPLLVLTLRK  153 (211)
Q Consensus        94 ~~qR~al~~Aa~~aGl~~~~lv~EP~AAAl~y~~~~~~~~~~~vLV~D~GggT~Dvsv~~  153 (211)
                      ..++.. ..|++.||+++..++.+|.|+|+++.....  ....++|+||||||||++|++
T Consensus       166 ~~~~~~-~~a~~~aGl~v~~iv~ep~Aaa~a~l~~~e--~~~gv~vvDiGggtTdisv~~  222 (420)
T PRK09472        166 DMAKNI-VKAVERCGLKVDQLIFAGLASSYAVLTEDE--RELGVCVVDIGGGTMDIAVYT  222 (420)
T ss_pred             HHHHHH-HHHHHHcCCeEeeEEehhhHHHHHhcChhh--hhcCeEEEEeCCCceEEEEEE
Confidence            344444 569999999999999999999998854432  567899999999999999996

>TIGR01174 ftsA cell division protein FtsA

Probab=98.41  E-value=6.4e-07  Score=81.14  Aligned_cols=59  Identities=19%  Similarity=0.054  Sum_probs=49.6

Q ss_pred             HHHHHHHHHHHHHhCCceeEEeechhHHHHHcccccCCCCCceEEEeecCCCceEEEEEec
Q psy471           94 DAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVKLPKMLEPLLVLTLRKK  154 (211)
Q Consensus        94 ~~qR~al~~Aa~~aGl~~~~lv~EP~AAAl~y~~~~~~~~~~~vLV~D~GggT~Dvsv~~~  154 (211)
                      ......+.+|++.||+++..++.+|+|+|++|.....  ....++|+|+|||||++++++.
T Consensus       157 ~~~v~~~~~~~~~aGl~~~~i~~~~~A~a~a~~~~~~--~~~~~~vvDiG~gtt~i~i~~~  215 (371)
T TIGR01174       157 STILRNLVKCVERCGLEVDNIVLSGLASAIAVLTEDE--KELGVCLIDIGGGTTDIAVYTG  215 (371)
T ss_pred             HHHHHHHHHHHHHcCCCeeeEEEhhhhhhhhhcCcch--hcCCEEEEEeCCCcEEEEEEEC
Confidence            4555677889999999999999999999998854332  4678999999999999999864

This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.

>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton

Probab=97.94  E-value=5.7e-05  Score=68.18  Aligned_cols=84  Identities=7%  Similarity=-0.000  Sum_probs=64.4

Q ss_pred             HHHHHHHHHHHHHHhhccccceeeEccCCCccHHHHHHHHHH-HHHhCCceeEEeechhHHHHHcccccCCCCCceEEEe
Q psy471           62 LFQLLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDA-GAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVKLP  140 (211)
Q Consensus        62 ~a~iL~~L~~~a~~~~g~~~~~vVItVPa~f~~~qR~al~~A-a~~aGl~~~~lv~EP~AAAl~y~~~~~~~~~~~vLV~  140 (211)
                      +..+++++....... ...-..++|++|..++..+|+.+.+. ....|++.+.++++|.+|+++++.       .+.+|+
T Consensus        77 ~e~~~~~~~~~~l~~-~~~~~~vvl~~p~~~~~~~r~~~~e~lfe~~~~~~v~~~~~~~~a~~~~g~-------~~~lVV  148 (371)
T cd00012          77 MEKIWDHLFFNELKV-NPEEHPVLLTEPPLNPKSNREKTTEIMFETFNVPALYVAIQAVLSLYASGR-------TTGLVV  148 (371)
T ss_pred             HHHHHHHHHHHhcCC-CCCCCceEEecCCCCCHHHHHHHHHHhhccCCCCEEEEechHHHHHHhcCC-------CeEEEE
Confidence            455555555432111 11245799999999998888877764 677899999999999999999865       578999


Q ss_pred             ecCCCceEEEEEe
Q psy471          141 KMLEPLLVLTLRK  153 (211)
Q Consensus       141 D~GggT~Dvsv~~  153 (211)
                      |+|+++|+++.+.
T Consensus       149 DiG~~~t~i~pv~  161 (371)
T cd00012         149 DSGDGVTHVVPVY  161 (371)
T ss_pred             ECCCCeeEEEEEE
Confidence            9999999998764

Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins.

>TIGR03739 PRTRC_D PRTRC system protein D

Probab=97.86  E-value=4.1e-05  Score=68.28  Aligned_cols=74  Identities=12%  Similarity=0.101  Sum_probs=57.3

Q ss_pred             ccceeeEccCCCccHHHHHHHHHHHHH---------hCCceeEEeechhHHHHHcccccC--CCCCceEEEeecCCCceE
Q psy471           80 SVRDAVITVPAYFNDAQRQATKDAGAI---------AGLNVMRIVNEPTAAALAYGLDKN--LKGERNVKLPKMLEPLLV  148 (211)
Q Consensus        80 ~~~~vVItVPa~f~~~qR~al~~Aa~~---------aGl~~~~lv~EP~AAAl~y~~~~~--~~~~~~vLV~D~GggT~D  148 (211)
                      .+..+|+..|..+...+|..+++....         .-+..+.++++|.+|.+.+.....  ......++|+|+|++|+|
T Consensus       101 ~~~~lv~GLP~~~~~~~k~~l~~~l~g~~~~~~~~~i~I~~V~V~PQ~~Ga~~~~~~~~~~~~~~~~~~lVIDIG~~TtD  180 (320)
T TIGR03739       101 EIDQLVVGLPVATLTTYKSALEKAVTGEHDIGAGKAVTVRKVLAVPQPQGALVHFVAQHGKLLTGKEQSLIIDPGYFTFD  180 (320)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHHHhccceecCCceEEEEEEEEEeCCChHHHHHHHhcCCCcccCcCcEEEEecCCCeee
Confidence            355799999999988899999887643         233557789999999888765322  125567899999999999


Q ss_pred             EEEEe
Q psy471          149 LTLRK  153 (211)
Q Consensus       149 vsv~~  153 (211)
                      +.+++
T Consensus       181 ~~~~~  185 (320)
T TIGR03739       181 WLVAR  185 (320)
T ss_pred             eehcc
Confidence            98864

A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein D. The gray zone, between trusted and noise, includes proteins found in the same genomes as other proteins of the PRTRC systems, but not in the same contiguous gene region.

>smart00268 ACTIN Actin

Probab=97.85  E-value=0.00011  Score=66.17  Aligned_cols=82  Identities=9%  Similarity=-0.014  Sum_probs=65.9

Q ss_pred             HHHHHHHHHHHHHHhhcc--ccceeeEccCCCccHHHHHHHHHHH-HHhCCceeEEeechhHHHHHcccccCCCCCceEE
Q psy471           62 LFQLLTKMKETAEAYLGH--SVRDAVITVPAYFNDAQRQATKDAG-AIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVK  138 (211)
Q Consensus        62 ~a~iL~~L~~~a~~~~g~--~~~~vVItVPa~f~~~qR~al~~Aa-~~aGl~~~~lv~EP~AAAl~y~~~~~~~~~~~vL  138 (211)
                      +..+++++...   .++.  .-..++|+.|...+..+|+.+.+.+ ...|++.+.++++|.+|+++++       ..+.|
T Consensus        77 ~e~i~~~~~~~---~l~~~~~~~~vll~~p~~~~~~~r~~~~e~lfE~~~~~~v~~~~~~~~a~~~~g-------~~~~l  146 (373)
T smart00268       77 MEKIWDYTFFN---ELRVEPEEHPVLLTEPPMNPKSNREKILEIMFETFNFPALYIAIQAVLSLYASG-------RTTGL  146 (373)
T ss_pred             HHHHHHHHHhh---hcCCCCccCeeEEecCCCCCHHHHHHHHHHhhccCCCCeEEEeccHHHHHHhCC-------CCEEE
Confidence            55666666654   2332  2357999999999999999988886 5779999999999999999986       45789


Q ss_pred             EeecCCCceEEEEEe
Q psy471          139 LPKMLEPLLVLTLRK  153 (211)
Q Consensus       139 V~D~GggT~Dvsv~~  153 (211)
                      |+|+|+++++++.+.
T Consensus       147 VVDiG~~~t~v~pv~  161 (373)
T smart00268      147 VIDSGDGVTHVVPVV  161 (373)
T ss_pred             EEecCCCcceEEEEE
Confidence            999999999999864

ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily

>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]

Probab=97.83  E-value=4.3e-05  Score=70.95  Aligned_cols=64  Identities=31%  Similarity=0.251  Sum_probs=51.6

Q ss_pred             eeEccCCCccHHHHHHHHHHHHHhCCceeEEeechhHHHHHcccccCCCCCceEEEeecCCCceEEEEEe
Q psy471           84 AVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVKLPKMLEPLLVLTLRK  153 (211)
Q Consensus        84 vVItVPa~f~~~qR~al~~Aa~~aGl~~~~lv~EP~AAAl~y~~~~~~~~~~~vLV~D~GggT~Dvsv~~  153 (211)
                      .++++|    ..--+-|.+|...+|+++..++-+|.|+|.+..-...  ..-.++++||||||||+++++
T Consensus       158 hvit~~----~~~~~Nl~k~v~r~gl~v~~i~l~plAsa~a~L~~dE--kelGv~lIDiG~GTTdIai~~  221 (418)
T COG0849         158 HVITGP----KNILENLEKCVERAGLKVDNIVLEPLASALAVLTEDE--KELGVALIDIGGGTTDIAIYK  221 (418)
T ss_pred             EEEEcc----hHHHHHHHHHHHHhCCCeeeEEEehhhhhhhccCccc--HhcCeEEEEeCCCcEEEEEEE
Confidence            355555    3445567788999999999999999999976654433  677899999999999999986

>PRK13917 plasmid segregation protein ParM; Provisional

Probab=97.44  E-value=0.00058  Score=61.74  Aligned_cols=71  Identities=13%  Similarity=0.070  Sum_probs=49.2

Q ss_pred             eeeEccCCCccHHHH-HHHHHHHHH------------hCCceeEEeechhHHHHHcccccC------CCCCceEEEeecC
Q psy471           83 DAVITVPAYFNDAQR-QATKDAGAI------------AGLNVMRIVNEPTAAALAYGLDKN------LKGERNVKLPKML  143 (211)
Q Consensus        83 ~vVItVPa~f~~~qR-~al~~Aa~~------------aGl~~~~lv~EP~AAAl~y~~~~~------~~~~~~vLV~D~G  143 (211)
                      .+++..|..+...++ +.+++....            ..+..+.++++|.+|++.+.+...      ......++|+|+|
T Consensus       114 ~l~tGLPv~~~~~~~~~~l~k~l~~~~~v~~~g~~~~I~i~~V~V~pQ~~ga~~~~~~~~~g~~~~~~~~~~~ilvIDIG  193 (344)
T PRK13917        114 VVATGMPSEEIGTDKVAKFEKLLNKSRLIEINGIAVTINVKGVKVVAQPMGTLLDLYLDNDGVVADKAFEEGKVSVIDFG  193 (344)
T ss_pred             EEEEcCCHHHHHHHHHHHHHHHhcCceEEEECCEEEEEEEEEEEEecccHHHHHHHHhcccCcccchhcccCcEEEEEcC
Confidence            345699998755454 566655421            112346688999999988876532      1244578999999


Q ss_pred             CCceEEEEEe
Q psy471          144 EPLLVLTLRK  153 (211)
Q Consensus       144 ggT~Dvsv~~  153 (211)
                      +||+|+++++
T Consensus       194 ~~TtD~~v~~  203 (344)
T PRK13917        194 SGTTDLDTIQ  203 (344)
T ss_pred             CCcEEEEEEe
Confidence            9999999975

>PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton

Probab=97.09  E-value=0.0025  Score=57.62  Aligned_cols=83  Identities=13%  Similarity=0.067  Sum_probs=57.2

Q ss_pred             HHHHHHHHHHHHHHhhccccceeeEccCCCccHHHHHHHHHHH-HHhCCceeEEeechhHHHHHcccccCCCCCceEEEe
Q psy471           62 LFQLLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAG-AIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVKLP  140 (211)
Q Consensus        62 ~a~iL~~L~~~a~~~~g~~~~~vVItVPa~f~~~qR~al~~Aa-~~aGl~~~~lv~EP~AAAl~y~~~~~~~~~~~vLV~  140 (211)
                      +..+++++..... .....-..++|+.|..++...|+.+.+.+ ...|++.+.+++.|.+|+++++..       +-||+
T Consensus        76 ~e~i~~~~~~~~l-~~~~~~~~vll~~~~~~~~~~r~~l~e~lfE~~~~~~v~~~~~~~~a~~~~g~~-------tglVV  147 (393)
T PF00022_consen   76 LEEIWDYIFSNLL-KVDPSDHPVLLTEPPFNPRSQREKLAEILFEKFGVPSVYFIPSPLLALYASGRT-------TGLVV  147 (393)
T ss_dssp             HHHHHHHHHHTTT--SSGGGSEEEEEESTT--HHHHHHHHHHHHHTS--SEEEEEEHHHHHHHHTTBS-------SEEEE
T ss_pred             ccccccccccccc-ccccccceeeeeccccCCchhhhhhhhhhhcccccceeeeeecccccccccccc-------ccccc
Confidence            4445555444321 11123457999999999998888777664 577999999999999999998765       45999


Q ss_pred             ecCCCceEEEEE
Q psy471          141 KMLEPLLVLTLR  152 (211)
Q Consensus       141 D~GggT~Dvsv~  152 (211)
                      |+|.+.+.++-+
T Consensus       148 D~G~~~t~v~pV  159 (393)
T PF00022_consen  148 DIGYSSTSVVPV  159 (393)
T ss_dssp             EESSS-EEEEEE
T ss_pred             ccceeeeeeeee
Confidence            999999988765

These filaments interact with myosin to produce a sliding effect, which is the basis of muscular contraction and many aspects of cell motility, including cytokinesis. Each actin protomer binds one molecule of ATP and has one high affinity site for either calcium or magnesium ions, as well as several low affinity sites. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Actin from many sources forms a tight complex with deoxyribonuclease (DNase I) although the significance of this is still unknown. The formation of this complex results in the inhibition of DNase I activity, and actin loses its ability to polymerise. It has been shown that an ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins [, ]. In vertebrates there are three groups of actin isoforms: alpha, beta and gamma. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins co-exists in most cell types as components of the cytoskeleton and as mediators of internal cell motility. In plants there are many isoforms which are probably involved in a variety of functions such as cytoplasmic streaming, cell shape determination, tip growth, graviperception, cell wall deposition, etc. Recently some divergent actin-like proteins have been identified in several species. These proteins include centractin (actin-RPV) from mammals, fungi yeast ACT5, Neurospora crassa ro-4) and Pneumocystis carinii, which seems to be a component of a multi-subunit centrosomal complex involved in microtubule based vesicle motility (this subfamily is known as ARP1); ARP2 subfamily, which includes chicken ACTL, Saccharomyces cerevisiae ACT2, Drosophila melanogaster 14D and Caenorhabditis elegans actC; ARP3 subfamily, which includes actin 2 from mammals, Drosophila 66B, yeast ACT4 and Schizosaccharomyces pombe act2; and ARP4 subfamily, which includes yeast ACT3 and Drosophila 13E.; PDB: 2OAN_B 1HLU_A 2BTF_A 3UB5_A 3U4L_A 4EFH_A 1YVN_A 1YAG_A 1D4X_A 1MDU_B ....

>PF07520 SrfB: Virulence factor SrfB; InterPro: IPR009216 This entry represents proteins of unknown function

Probab=96.64  E-value=0.0081  Score=60.91  Aligned_cols=50  Identities=16%  Similarity=0.238  Sum_probs=39.1

Q ss_pred             CchHHHHHHHHHHHHHHHhhccc--------------cceeeEccCCCccHHHHHHHHHHHHHh
Q psy471           58 HSPRLFQLLTKMKETAEAYLGHS--------------VRDAVITVPAYFNDAQRQATKDAGAIA  107 (211)
Q Consensus        58 ~~~~~a~iL~~L~~~a~~~~g~~--------------~~~vVItVPa~f~~~qR~al~~Aa~~a  107 (211)
                      +|++.+++|.-+..+|..+++++              ++++++|||+......|.++++++.-|
T Consensus       419 RSSLMtfML~EiL~QAL~QINSpa~R~r~~~~~~PR~LR~IILT~P~AMPk~Er~ifr~r~~~A  482 (1002)
T PF07520_consen  419 RSSLMTFMLSEILAQALMQINSPAQRLRRGHSDAPRRLRRIILTLPPAMPKPEREIFRRRMEEA  482 (1002)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCHHHHhhcccCCCChhhhheeEECCCCCCHHHHHHHHHHHHHH
Confidence            44557888888888877666642              567999999999999999998887533

It has been shown in Salmonella enterica that srfB is one of the genes activated by the global signal transduction/regulatory system SsrA/B []. This activation takes place within eukaryotic cells. The activated genes include pathogenicity island 2 (SPI-2) genes and at least 10 other genes (srfB is one of them) which are believed to be horizontally acquired, and to be involved in virulence/pathogenicity [].

>TIGR01175 pilM type IV pilus assembly protein PilM

Probab=96.60  E-value=0.0089  Score=53.31  Aligned_cols=59  Identities=19%  Similarity=0.077  Sum_probs=46.8

Q ss_pred             HHHHHHHHHHHHHhCCceeEEeechhHHHHHcc-----cccCCCCCc-eEEEeecCCCceEEEEEe
Q psy471           94 DAQRQATKDAGAIAGLNVMRIVNEPTAAALAYG-----LDKNLKGER-NVKLPKMLEPLLVLTLRK  153 (211)
Q Consensus        94 ~~qR~al~~Aa~~aGl~~~~lv~EP~AAAl~y~-----~~~~~~~~~-~vLV~D~GggT~Dvsv~~  153 (211)
                      ....+.+.++++.+|+++..+..+|.|.+-.+.     +... .... +++++|+|++++++++++
T Consensus       142 ~~~v~~~~~~~~~aGl~~~~id~~~~Al~~~~~~~~~~~~~~-~~~~~~~~lvdiG~~~t~l~i~~  206 (348)
T TIGR01175       142 KEVVDSRLHALKLAGLEPKVVDVESFALLRAWRLLGEQLASR-TYRLTDAALVDIGATSSTLNLLH  206 (348)
T ss_pred             HHHHHHHHHHHHHcCCceEEEecHHHHHHHHHHHHHhhCccc-cccCceEEEEEECCCcEEEEEEE
Confidence            566778889999999999999999999876663     2212 2333 499999999999999986

This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.

>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA []

Probab=96.59  E-value=0.0029  Score=56.46  Aligned_cols=43  Identities=7%  Similarity=0.078  Sum_probs=32.8

Q ss_pred             ceeEEeechhHHHHHcccccCCCCCceEEEeecCCCceEEEEEec
Q psy471          110 NVMRIVNEPTAAALAYGLDKNLKGERNVKLPKMLEPLLVLTLRKK  154 (211)
Q Consensus       110 ~~~~lv~EP~AAAl~y~~~~~~~~~~~vLV~D~GggT~Dvsv~~~  154 (211)
                      ..+.++++|.||.+.+.....  ....+||+|+||+|+|+++++-
T Consensus       141 ~~V~V~PQ~~~A~~~~~~~~~--~~~~~lVVDIGG~T~Dv~~v~~  183 (318)
T PF06406_consen  141 KDVEVFPQSVGAVFDALMDLD--EDESVLVVDIGGRTTDVAVVRG  183 (318)
T ss_dssp             EEEEEEESSHHHHHHHHHTS---TTSEEEEEEE-SS-EEEEEEEG
T ss_pred             eeEEEEcccHHHHHHHHHhhc--ccCcEEEEEcCCCeEEeeeecC
Confidence            457789999999998766633  4467999999999999999863

They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A.

>PTZ00280 Actin-related protein 3; Provisional

Probab=96.54  E-value=0.021  Score=52.61  Aligned_cols=71  Identities=14%  Similarity=0.019  Sum_probs=55.7

Q ss_pred             ceeeEccCCCccHHHHHHHHHHH-HHhCCceeEEeechhHHHHHcccccCCC---CCceEEEeecCCCceEEEEE
Q psy471           82 RDAVITVPAYFNDAQRQATKDAG-AIAGLNVMRIVNEPTAAALAYGLDKNLK---GERNVKLPKMLEPLLVLTLR  152 (211)
Q Consensus        82 ~~vVItVPa~f~~~qR~al~~Aa-~~aGl~~~~lv~EP~AAAl~y~~~~~~~---~~~~vLV~D~GggT~Dvsv~  152 (211)
                      ..++||.|..++..+|..+.+.+ ...+++.+.+++.|.+++++++......   ...+-||+|+|.+++.++-+
T Consensus       103 ~~vllte~~~~~~~~Re~l~e~lFE~~~~p~i~~~~~~~lslya~~~~~~~~~~~g~~tglVVDiG~~~T~i~PV  177 (414)
T PTZ00280        103 HYFILTEPPMNPPENREYTAEIMFETFNVKGLYIAVQAVLALRASWTSKKAKELGGTLTGTVIDSGDGVTHVIPV  177 (414)
T ss_pred             CceEEeeCCCCcHHHHHHHHHHHhhccCCCeEEEecCHHHhHhhhcccccccccCCceeEEEEECCCCceEEEEE
Confidence            46899999999999898887764 5669999999999999998874432211   23456999999999999754

>PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional

Probab=96.43  E-value=0.0092  Score=56.23  Aligned_cols=89  Identities=12%  Similarity=0.019  Sum_probs=59.5

Q ss_pred             HHHHHHHHHHHHHHhhcccc-----ceeeEccCCCccHHHHHHHHHHHH--------HhCCceeEEeechhHHHHHcccc
Q psy471           62 LFQLLTKMKETAEAYLGHSV-----RDAVITVPAYFNDAQRQATKDAGA--------IAGLNVMRIVNEPTAAALAYGLD  128 (211)
Q Consensus        62 ~a~iL~~L~~~a~~~~g~~~-----~~vVItVPa~f~~~qR~al~~Aa~--------~aGl~~~~lv~EP~AAAl~y~~~  128 (211)
                      -+.-++.+.....+..|..+     .-.+||.+...-.+-++.+..+..        .||+++-.++. |.|++.+.. .
T Consensus        64 D~~~i~~~V~~ey~~Agi~~~die~~ahIITg~~~~~~Nl~~~v~~~~~~~gdfVVA~AG~~le~iva-~~ASg~avL-s  141 (475)
T PRK10719         64 DEAAIKELIEEEYQKAGIAPESIDSGAVIITGETARKENAREVVMALSGSAGDFVVATAGPDLESIIA-GKGAGAQTL-S  141 (475)
T ss_pred             cHHHHHHHHHHHHHHcCCCHHHccccEEEEEechhHHHHHHHHHHHhcccccceeeeccCccHHHhhh-HHHhhHHHh-h
Confidence            55566666666666666443     346888886555555555554322        26666666666 888776554 2


Q ss_pred             cCCCCCceEEEeecCCCceEEEEEec
Q psy471          129 KNLKGERNVKLPKMLEPLLVLTLRKK  154 (211)
Q Consensus       129 ~~~~~~~~vLV~D~GggT~Dvsv~~~  154 (211)
                      .  .....++++|+||||++++|++-
T Consensus       142 e--Eke~gVa~IDIGgGTT~iaVf~~  165 (475)
T PRK10719        142 E--ERNTRVLNIDIGGGTANYALFDA  165 (475)
T ss_pred             h--hccCceEEEEeCCCceEEEEEEC
Confidence            2  47788999999999999999863

>KOG0679|consensus

Probab=96.32  E-value=0.023  Score=52.25  Aligned_cols=83  Identities=10%  Similarity=0.059  Sum_probs=60.2

Q ss_pred             HHHHHHHHHHHHHHhhccccceeeEccCCCccHHHHHHHHHH-HHHhCCceeEEeechhHHHHHcccccCCCCCceEEEe
Q psy471           62 LFQLLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDA-GAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVKLP  140 (211)
Q Consensus        62 ~a~iL~~L~~~a~~~~g~~~~~vVItVPa~f~~~qR~al~~A-a~~aGl~~~~lv~EP~AAAl~y~~~~~~~~~~~vLV~  140 (211)
                      +.++.++..+...+ ..-...-++||-|++-+..+|..+.+. .....++...|+..|+++|++.|       +.+.||+
T Consensus        88 ~~~~w~~~~~~~Lk-~~p~ehP~litEp~wN~~~~Rek~~ElmFE~~nvPAf~L~k~~v~~AFA~G-------rstalVv  159 (426)
T KOG0679|consen   88 FEMQWRYAYKNQLK-VNPEEHPVLITEPPWNTRANREKLTELMFEKLNVPAFYLAKTAVCTAFANG-------RSTALVV  159 (426)
T ss_pred             HHHHHHHHHhhhhh-cCccccceeeecCCCCcHHHHHHHHHHHHhhcCCceEEEechHHHHHHhcC-------CCceEEE
Confidence            44555555432211 122235689999999888999877766 46778888889999998888764       4567999


Q ss_pred             ecCCCceEEEEE
Q psy471          141 KMLEPLLVLTLR  152 (211)
Q Consensus       141 D~GggT~Dvsv~  152 (211)
                      |+|++++.++=+
T Consensus       160 DiGa~~~svsPV  171 (426)
T KOG0679|consen  160 DIGATHTSVSPV  171 (426)
T ss_pred             EecCCCceeeee
Confidence            999999998854

>PF02541 Ppx-GppA: Ppx/GppA phosphatase family; InterPro: IPR003695 Exopolyphosphate phosphatase (Ppx) 3

Probab=95.99  E-value=0.017  Score=50.46  Aligned_cols=98  Identities=17%  Similarity=0.207  Sum_probs=54.3

Q ss_pred             eeccccCCCchHHHHHHHHHHHHHHHhhccccceee-E-ccCCCccHHHHHHHHHHHHHhCCceeEEeechhHHHHHc-c
Q psy471           50 SFSPRCCHHSPRLFQLLTKMKETAEAYLGHSVRDAV-I-TVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAY-G  126 (211)
Q Consensus        50 ~~speel~~~~~~a~iL~~L~~~a~~~~g~~~~~vV-I-tVPa~f~~~qR~al~~Aa~~aGl~~~~lv~EP~AAAl~y-~  126 (211)
                      .++++-+   .++...|+.+++.+..+   .+.++. + |--..--.++...+.+.-...|+++- +++...=|.+.| +
T Consensus        31 ~i~~e~i---~r~~~~L~~f~~~~~~~---~v~~i~~vATsA~R~A~N~~~~~~~i~~~tGi~i~-iIsgeeEa~l~~~g  103 (285)
T PF02541_consen   31 RISEEAI---ERAIDALKRFKEILKDY---GVEKIRAVATSALREAKNSDEFLDRIKKETGIDIE-IISGEEEARLSFLG  103 (285)
T ss_dssp             SB-HHHH---HHHHHHHHHHHHHHHHT---TGSEEEEEEEHHHHHSTTHHHHHHHHHHHHSS-EE-EE-HHHHHHHHHHH
T ss_pred             CcCHHHH---HHHHHHHHHHHHHHHHC---CCCEEEEEhhHHHHhCcCHHHHHHHHHHHhCCceE-EecHHHHHHHHHHH
Confidence            3555444   23455566666665544   344332 2 11111112333455566677898776 677666655554 3


Q ss_pred             cccCCCCCceEEEeecCCCceEEEEEec
Q psy471          127 LDKNLKGERNVKLPKMLEPLLVLTLRKK  154 (211)
Q Consensus       127 ~~~~~~~~~~vLV~D~GggT~Dvsv~~~  154 (211)
                      ........+..+|+|+|||+|.+++++-
T Consensus       104 v~~~l~~~~~~lviDIGGGStEl~~~~~  131 (285)
T PF02541_consen  104 VLSSLPPDKNGLVIDIGGGSTELILFEN  131 (285)
T ss_dssp             HHHHSTTTSSEEEEEEESSEEEEEEEET
T ss_pred             HHhhccccCCEEEEEECCCceEEEEEEC
Confidence            3222235678999999999999999854

6.1.11 from EC and guanosine pentaphosphate phosphatase (GppA) 3.6.1.40 from EC belong to the sugar kinase/actin/hsp70 superfamily [].; PDB: 3MDQ_A 1U6Z_A 1T6D_B 2J4R_B 1T6C_A 2FLO_B 3CER_B 3HI0_A.

>PTZ00004 actin-2; Provisional

Probab=95.93  E-value=0.026  Score=51.40  Aligned_cols=65  Identities=9%  Similarity=-0.027  Sum_probs=53.6

Q ss_pred             cceeeEccCCCccHHHHHHHHHH-HHHhCCceeEEeechhHHHHHcccccCCCCCceEEEeecCCCceEEEEE
Q psy471           81 VRDAVITVPAYFNDAQRQATKDA-GAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVKLPKMLEPLLVLTLR  152 (211)
Q Consensus        81 ~~~vVItVPa~f~~~qR~al~~A-a~~aGl~~~~lv~EP~AAAl~y~~~~~~~~~~~vLV~D~GggT~Dvsv~  152 (211)
                      -..+++|-|.+++..+|+.+.+. ....|++.+.+++.|.+++++++.       .+-||+|+|.+.+.++-+
T Consensus       101 ~~pvllte~~~~~~~~r~~~~e~lFE~~~~~~~~~~~~~~ls~ya~g~-------~tglVVDiG~~~t~v~pV  166 (378)
T PTZ00004        101 EHPVLLTEAPLNPKANREKMTQIMFETHNVPAMYVAIQAVLSLYASGR-------TTGIVLDSGDGVSHTVPI  166 (378)
T ss_pred             cCcceeecCCCCcHHHHHHHHHHHHhhcCCceEEeeccHHHHHHhcCC-------ceEEEEECCCCcEEEEEE
Confidence            35688999999999988876665 567899999999999999988753       456999999999988764

>PRK10854 exopolyphosphatase; Provisional

Probab=95.73  E-value=0.044  Score=52.20  Aligned_cols=98  Identities=14%  Similarity=0.104  Sum_probs=58.9

Q ss_pred             eeccccCCCchHHHHHHHHHHHHHHHhhccccce--eeEccCCCccHHHHHHHHHHHHHhCCceeEEeechhHHHHHc-c
Q psy471           50 SFSPRCCHHSPRLFQLLTKMKETAEAYLGHSVRD--AVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAY-G  126 (211)
Q Consensus        50 ~~speel~~~~~~a~iL~~L~~~a~~~~g~~~~~--vVItVPa~f~~~qR~al~~Aa~~aGl~~~~lv~EP~AAAl~y-~  126 (211)
                      .++++-+   .++-..|+.+++.+..+   .+..  +|=|--..=-.++..++.++-..+|+++- +|+-..=|-+.| |
T Consensus        56 ~Ls~e~~---~r~~~~L~~F~~~~~~~---~v~~v~~vATsAlReA~N~~~fl~~i~~~tGl~i~-vIsG~EEA~l~~~g  128 (513)
T PRK10854         56 MLSEEAM---ERGLNCLSLFAERLQGF---SPANVCIVGTHTLRQALNATDFLKRAEKVIPYPIE-IISGNEEARLIFMG  128 (513)
T ss_pred             CcCHHHH---HHHHHHHHHHHHHHHhC---CCCeEEEEehHHHHcCcCHHHHHHHHHHHHCCCeE-EeCHHHHHHHHHhh
Confidence            4555555   33555666666666544   3332  22222211122344456666677898775 777776666665 4


Q ss_pred             cccCCCCCceEEEeecCCCceEEEEEec
Q psy471          127 LDKNLKGERNVKLPKMLEPLLVLTLRKK  154 (211)
Q Consensus       127 ~~~~~~~~~~vLV~D~GggT~Dvsv~~~  154 (211)
                      ........+..+|+|+|||++.+++++-
T Consensus       129 v~~~l~~~~~~lvvDIGGGStEl~~~~~  156 (513)
T PRK10854        129 VEHTQPEKGRKLVIDIGGGSTELVIGEN  156 (513)
T ss_pred             hhcccCCCCCeEEEEeCCCeEEEEEecC
Confidence            4444333467899999999999999863

>PTZ00452 actin; Provisional

Probab=95.61  E-value=0.081  Score=48.34  Aligned_cols=65  Identities=11%  Similarity=-0.062  Sum_probs=53.5

Q ss_pred             cceeeEccCCCccHHHHHHHHHH-HHHhCCceeEEeechhHHHHHcccccCCCCCceEEEeecCCCceEEEEE
Q psy471           81 VRDAVITVPAYFNDAQRQATKDA-GAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVKLPKMLEPLLVLTLR  152 (211)
Q Consensus        81 ~~~vVItVPa~f~~~qR~al~~A-a~~aGl~~~~lv~EP~AAAl~y~~~~~~~~~~~vLV~D~GggT~Dvsv~  152 (211)
                      -..+++|-|+..+..+|..+.+. .+..+++.+.+.+.|.+++++++.       .+-||+|+|.+.+.++-+
T Consensus       100 ~~pvlitE~~~~~~~~Re~l~eilFE~~~vp~~~~~~~~~lslya~g~-------~tglVVDiG~~~t~v~PV  165 (375)
T PTZ00452        100 DQPVFMTDAPMNSKFNRERMTQIMFETFNTPCLYISNEAVLSLYTSGK-------TIGLVVDSGEGVTHCVPV  165 (375)
T ss_pred             cCceeeecCCCCCHHHHHHHHHHHhhccCCceEEEechHHHHHHHCCC-------ceeeeecCCCCcceEEEE
Confidence            35789999999999999888766 466788899999999999988753       356999999999988654

>PTZ00281 actin; Provisional

Probab=95.54  E-value=0.092  Score=47.86  Aligned_cols=63  Identities=10%  Similarity=-0.028  Sum_probs=53.1

Q ss_pred             cceeeEccCCCccHHHHHHHHHH-HHHhCCceeEEeechhHHHHHcccccCCCCCceEEEeecCCCceEEE
Q psy471           81 VRDAVITVPAYFNDAQRQATKDA-GAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVKLPKMLEPLLVLT  150 (211)
Q Consensus        81 ~~~vVItVPa~f~~~qR~al~~A-a~~aGl~~~~lv~EP~AAAl~y~~~~~~~~~~~vLV~D~GggT~Dvs  150 (211)
                      -..++||-|.+++..+|..+.+. ....++..+.+++.|.+++++++.       .+-||+|+|.+.+.++
T Consensus       101 ~~pvllte~~~~~~~~re~l~e~lFE~~~vp~~~~~~~~~ls~ya~g~-------~tglVVDiG~~~t~v~  164 (376)
T PTZ00281        101 EHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGR-------TTGIVMDSGDGVSHTV  164 (376)
T ss_pred             cCeEEEecCCCCcHHHHHHHHHHHhcccCCceeEeeccHHHHHHhcCC-------ceEEEEECCCceEEEE
Confidence            35788999999999999888774 577899999999999999988753       3669999999999876

>PTZ00466 actin-like protein; Provisional

Probab=95.49  E-value=0.089  Score=48.18  Aligned_cols=80  Identities=5%  Similarity=-0.024  Sum_probs=59.6

Q ss_pred             HHHHHHHHHHHHHHhhcc--ccceeeEccCCCccHHHHHHHHHH-HHHhCCceeEEeechhHHHHHcccccCCCCCceEE
Q psy471           62 LFQLLTKMKETAEAYLGH--SVRDAVITVPAYFNDAQRQATKDA-GAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVK  138 (211)
Q Consensus        62 ~a~iL~~L~~~a~~~~g~--~~~~vVItVPa~f~~~qR~al~~A-a~~aGl~~~~lv~EP~AAAl~y~~~~~~~~~~~vL  138 (211)
                      ...++.++..    .++.  .-..+++|-|++++..+|..+.+. ....+++.+.+.+.|.+|+++++.       .+-+
T Consensus        89 ~e~iw~~~f~----~l~v~~~~~pvllte~~~~~~~~re~~~e~lFE~~~~p~~~~~~~~~lsl~a~g~-------~tgl  157 (380)
T PTZ00466         89 MENIWIHVYN----SMKINSEEHPVLLTEAPLNPQKNKEKIAEVFFETFNVPALFISIQAILSLYSCGK-------TNGT  157 (380)
T ss_pred             HHHHHHHHHh----hcccCCccCeEEEecCccccHHHHHHHHHHHhccCCCCeEEEecchHHHHHhcCC-------ceEE
Confidence            4455555542    2332  235688899999999999887665 567788999999999999988753       4679


Q ss_pred             EeecCCCceEEEEE
Q psy471          139 LPKMLEPLLVLTLR  152 (211)
Q Consensus       139 V~D~GggT~Dvsv~  152 (211)
                      |+|+|.+.+.++-+
T Consensus       158 VVD~G~~~t~v~PV  171 (380)
T PTZ00466        158 VLDCGDGVCHCVSI  171 (380)
T ss_pred             EEeCCCCceEEEEE
Confidence            99999999988543

>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional

Probab=95.25  E-value=0.078  Score=50.32  Aligned_cols=58  Identities=17%  Similarity=0.180  Sum_probs=41.1

Q ss_pred             HHHHHHHHHHHHhCCceeEEeechhHHHHHc-ccccCCCCCceEEEeecCCCceEEEEEe
Q psy471           95 AQRQATKDAGAIAGLNVMRIVNEPTAAALAY-GLDKNLKGERNVKLPKMLEPLLVLTLRK  153 (211)
Q Consensus        95 ~qR~al~~Aa~~aGl~~~~lv~EP~AAAl~y-~~~~~~~~~~~vLV~D~GggT~Dvsv~~  153 (211)
                      ++..++.++-..+|+++- +|+-..=|-+.| |...........+|+|+|||++.+++++
T Consensus        92 N~~~fl~~i~~~tGl~ie-vIsG~eEA~l~~~gv~~~l~~~~~~lviDIGGGStEl~~~~  150 (496)
T PRK11031         92 NADEFLAKAQEILGCPVQ-VISGEEEARLIYQGVAHTTGGADQRLVVDIGGASTELVTGT  150 (496)
T ss_pred             CHHHHHHHHHHHHCCCeE-EeCHHHHHHHHHHhhhhccCCCCCEEEEEecCCeeeEEEec
Confidence            444566667777898776 777666666665 4444333344689999999999999875

>COG4457 SrfB Uncharacterized protein conserved in bacteria, putative virulence factor [Function unknown]

Probab=95.05  E-value=0.13  Score=50.47  Aligned_cols=54  Identities=20%  Similarity=0.417  Sum_probs=39.5

Q ss_pred             eccccCCCchHHHHHHHHHHHHHHHhhccc--------------cceeeEccCCCccHHHHHHHHHHHH
Q psy471           51 FSPRCCHHSPRLFQLLTKMKETAEAYLGHS--------------VRDAVITVPAYFNDAQRQATKDAGA  105 (211)
Q Consensus        51 ~speel~~~~~~a~iL~~L~~~a~~~~g~~--------------~~~vVItVPa~f~~~qR~al~~Aa~  105 (211)
                      |+| ..-+|++.+++|..+..+|-.+++.+              .+++++|+|+...-..|..+++.+.
T Consensus       420 fsp-~ySRSslmTfML~EilaqAl~qiNsp~tR~kl~~~~aPR~LRsiILTlPsAmPk~EreIfr~r~~  487 (1014)
T COG4457         420 FSP-CYSRSSLMTFMLSEILAQALSQINSPATRLKLRHKDAPRQLRSIILTLPSAMPKQEREIFRQRME  487 (1014)
T ss_pred             ccc-cccHHHHHHHHHHHHHHHHHHhhcCHHHhhhhccCCchHhhhhheeeCCccCCchHHHHHHHHHH
Confidence            443 33456668888888888877666532              4678999999999988888877653

>COG0145 HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]

Probab=95.04  E-value=0.1  Score=51.42  Aligned_cols=87  Identities=21%  Similarity=0.138  Sum_probs=54.5

Q ss_pred             CCchHHHHHHHHHHHHHHHhhccccceeeEccCCCccHHHHHHHHHHHHHhCCceeEEeechhHHHHHcccccCCCCCce
Q psy471           57 HHSPRLFQLLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERN  136 (211)
Q Consensus        57 ~~~~~~a~iL~~L~~~a~~~~g~~~~~vVItVPa~f~~~qR~al~~Aa~~aGl~~~~lv~EP~AAAl~y~~~~~~~~~~~  136 (211)
                      .-+|++..+|+.++...+.. |.+..-.++-.        ---|..+-...+.++..|.+-|.|-.+...+.-....+ +
T Consensus       210 ~L~pi~~~yl~~v~~~l~~~-g~~~~l~~m~s--------dGgl~~~~~a~~~pv~tI~SGPAagvvGAa~ltg~~~g-~  279 (674)
T COG0145         210 YLSPILRRYLEAVKDALKER-GIKARLMVMQS--------DGGLVSAEEAREKPVETILSGPAAGVVGAAYLTGLKAG-N  279 (674)
T ss_pred             eehHHHHHHHHHHHHHHHhc-CCCceeEEEec--------CCccccHHHHhcCCeeeEeeccHHHHHHHHHhcccccC-C
Confidence            33555777887777754422 22211111111        11223455566778888999999988776655222233 6


Q ss_pred             EEEeecCCCceEEEEEe
Q psy471          137 VKLPKMLEPLLVLTLRK  153 (211)
Q Consensus       137 vLV~D~GggT~Dvsv~~  153 (211)
                      ++++||||.|||++++.
T Consensus       280 ~i~~DmGGTStDva~i~  296 (674)
T COG0145         280 AIVFDMGGTSTDVALII  296 (674)
T ss_pred             EEEEEcCCcceeeeeee
Confidence            99999999999999986

>PF08841 DDR: Diol dehydratase reactivase ATPase-like domain; InterPro: IPR009191 Diol dehydratase (propanediol dehydratase) and glycerol dehydratase undergo concomitant, irreversible inactivation by glycerol during catalysis [, ]

Probab=94.89  E-value=0.078  Score=47.19  Aligned_cols=60  Identities=15%  Similarity=-0.003  Sum_probs=39.8

Q ss_pred             HHHHHHHHH-HHHhCCceeEEeechhHHHHHcccccCCCCCceEEEeecCCCceEEEEEeccc
Q psy471           95 AQRQATKDA-GAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVKLPKMLEPLLVLTLRKKKK  156 (211)
Q Consensus        95 ~qR~al~~A-a~~aGl~~~~lv~EP~AAAl~y~~~~~~~~~~~vLV~D~GggT~Dvsv~~~~~  156 (211)
                      .|-+.+.+. ....|.++..-=-|+.+|++...-...  .+..+.|+||||||+|.|++.-++
T Consensus        95 l~M~~iA~~l~~~lgv~V~igGvEAemAi~GALTTPG--t~~PlaIlDmG~GSTDAsii~~~g  155 (332)
T PF08841_consen   95 LQMQMIADELEEELGVPVEIGGVEAEMAILGALTTPG--TDKPLAILDMGGGSTDASIINRDG  155 (332)
T ss_dssp             -TCHHHHHHHHHHHTSEEEEECEHHHHHHHHHTTSTT----SSEEEEEE-SSEEEEEEE-TTS
T ss_pred             ccHHHHHHHHHHHHCCceEEccccHHHHHhcccCCCC--CCCCeEEEecCCCcccHHHhCCCC
Confidence            444444333 346688887777788888876644443  778899999999999999997554

This inactivation is mechanism-based and involves cleavage of the Co-C bond of the cobalamin cofactor, coenzyme B12 (AdoCbl), forming 5 -deoxyadenosine and a modified coenzyme []. Irreversible inactivation of the enzyme results from tight binding to the modified, inactive cobalamin [, ]. The glycerol-inactivated enzyme undergoes rapid reactivation in the presence of free AdoCbl, ATP, and Mg 2+ (or Mn 2+ ) []. Reactivation is mediated by a complex of two proteins: a large subunit (DdrA/PduG) and a small subunit (DdrB/PduH, IPR009192 from INTERPRO) [, ]. The two subunits of the reactivating factor for glycerol dehydratase have been shown to form a tight complex that serves to reactivate the glycerol-inactivated holoenzyme, as well as O2-inactivated holoenzyme in vitro []. It is believed that this reactivating factor replaces an enzyme-bound, adenine-lacking inactive cobalamin with a free, adenine-containing active cobalamin []. PduG and PduH, part of the propanediol utilization pdu operon, are believed to have a similar function in the reactivation of propanediol dehydratase. PduG was also proposed, on the basis of genetic tests, to be a cobalamin adenosyltransferase involved in the conversion of inactive cobalamin (B12) to AdoCbl []. However, this function has since been shown to belong to another protein, PduO (IPR009221 from INTERPRO, IPR012228 from INTERPRO) []. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO for more details on the propanediol utilization pathway and pdu operon, as well as on the glycerol breakdown pathway.; PDB: 1NBW_C 2D0P_C 2D0O_C.

>TIGR03706 exo_poly_only exopolyphosphatase

Probab=94.80  E-value=0.15  Score=45.13  Aligned_cols=98  Identities=19%  Similarity=0.175  Sum_probs=55.7

Q ss_pred             eeccccCCCchHHHHHHHHHHHHHHHhhccccceeeEccCCCccHHHHHHHHHHHHHhCCceeEEeechhHHHHHcc-cc
Q psy471           50 SFSPRCCHHSPRLFQLLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYG-LD  128 (211)
Q Consensus        50 ~~speel~~~~~~a~iL~~L~~~a~~~~g~~~~~vVItVPa~f~~~qR~al~~Aa~~aGl~~~~lv~EP~AAAl~y~-~~  128 (211)
                      .++++-+   .++...|+.+++.+..+ +..--.++-|--..--.++...+...-..+|+++ ++++...-|.+.|. ..
T Consensus        45 ~i~~e~i---~~~~~~l~~f~~~~~~~-~v~~i~~vaTsa~R~A~N~~~~~~~i~~~tgi~i-~visg~eEa~l~~~gv~  119 (300)
T TIGR03706        45 RLSEEAI---ERALEALKRFAELLRGF-PVDEVRAVATAALRDAKNGPEFLREAEAILGLPI-EVISGEEEARLIYLGVA  119 (300)
T ss_pred             CcCHHHH---HHHHHHHHHHHHHHHhC-CCCeEEEEEcHHHHcCCCHHHHHHHHHHHHCCCe-EEeChHHHHHHHHHHHH
Confidence            3555544   22445666666666543 2221123333222222233344445556789876 48888888877763 33


Q ss_pred             cCCCCCceEEEeecCCCceEEEEEe
Q psy471          129 KNLKGERNVKLPKMLEPLLVLTLRK  153 (211)
Q Consensus       129 ~~~~~~~~vLV~D~GggT~Dvsv~~  153 (211)
                      ..... ...+++|+|||++.++++.
T Consensus       120 ~~~~~-~~~~v~DiGGGSte~~~~~  143 (300)
T TIGR03706       120 HTLPI-ADGLVVDIGGGSTELILGK  143 (300)
T ss_pred             hCCCC-CCcEEEEecCCeEEEEEec
Confidence            33222 2359999999999999875

It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response.

>COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]

Probab=94.64  E-value=0.17  Score=48.27  Aligned_cols=90  Identities=14%  Similarity=0.096  Sum_probs=53.8

Q ss_pred             HHHHHHHHHHHHHhhccccceeeE--ccCCCccHHHHHHHHHHHHHhCCceeEEeech-hHHHHHcccccCCCCCceEEE
Q psy471           63 FQLLTKMKETAEAYLGHSVRDAVI--TVPAYFNDAQRQATKDAGAIAGLNVMRIVNEP-TAAALAYGLDKNLKGERNVKL  139 (211)
Q Consensus        63 a~iL~~L~~~a~~~~g~~~~~vVI--tVPa~f~~~qR~al~~Aa~~aGl~~~~lv~EP-~AAAl~y~~~~~~~~~~~vLV  139 (211)
                      ...+..|+..++...+.++..+.+  |--..--.+.-.++..+.+..|+++- +|+-- .|-...+|.....+.....+|
T Consensus        55 ~R~~~aL~~f~e~~~~~~~~~v~~vATsA~R~A~N~~eFl~rv~~~~G~~ie-vIsGeeEArl~~lGv~~~~~~~~~~lv  133 (492)
T COG0248          55 ERALSALKRFAELLDGFGAEEVRVVATSALRDAPNGDEFLARVEKELGLPIE-VISGEEEARLIYLGVASTLPRKGDGLV  133 (492)
T ss_pred             HHHHHHHHHHHHHHhhCCCCEEEEehhHHHHcCCCHHHHHHHHHHHhCCceE-EeccHHHHHHHHHHHHhcCCCCCCEEE
Confidence            444445555544444445555322  11111123445578888888998776 55544 443444455444334788999


Q ss_pred             eecCCCceEEEEEe
Q psy471          140 PKMLEPLLVLTLRK  153 (211)
Q Consensus       140 ~D~GggT~Dvsv~~  153 (211)
                      +|+|||+|.+++..
T Consensus       134 ~DIGGGStEl~~g~  147 (492)
T COG0248         134 IDIGGGSTELVLGD  147 (492)
T ss_pred             EEecCCeEEEEEec
Confidence            99999999999875

>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3

Probab=94.30  E-value=0.031  Score=49.37  Aligned_cols=43  Identities=23%  Similarity=0.227  Sum_probs=28.2

Q ss_pred             CceeEEeechhHHHHHcccccCCCCCceEEEeecCCCceEEEEEe
Q psy471          109 LNVMRIVNEPTAAALAYGLDKNLKGERNVKLPKMLEPLLVLTLRK  153 (211)
Q Consensus       109 l~~~~lv~EP~AAAl~y~~~~~~~~~~~vLV~D~GggT~Dvsv~~  153 (211)
                      .++..+.+-|.|.++....  .....++++++||||.|||++++.
T Consensus        53 ~Pv~ti~SGPaas~~ga~~--~~~g~~~~i~vDmGGTTtDi~~i~   95 (290)
T PF01968_consen   53 RPVETILSGPAASVIGAAA--RLTGLENAIVVDMGGTTTDIALIK   95 (290)
T ss_dssp             SGGCTB--SSHHHHHHHHH----HT-SSEEEEEE-SS-EEEEEEE
T ss_pred             hHHHHhhcCHHHhHhhhhh--hcCCCCCEEEEeCCCCEEEEEEEE
Confidence            3556677888887766555  222567899999999999999996

5.2.9 from EC). Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds [].; GO: 0016787 hydrolase activity; PDB: 3C0B_C 3CET_B.

>KOG0797|consensus

Probab=93.89  E-value=0.28  Score=46.83  Aligned_cols=65  Identities=18%  Similarity=0.167  Sum_probs=53.1

Q ss_pred             ceeeEccCCCccHHHHH-HHHHHHHHhCCceeEEeechhHHHHHcccccCCCCCceEEEeecCCCceEEEEEe
Q psy471           82 RDAVITVPAYFNDAQRQ-ATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVKLPKMLEPLLVLTLRK  153 (211)
Q Consensus        82 ~~vVItVPa~f~~~qR~-al~~Aa~~aGl~~~~lv~EP~AAAl~y~~~~~~~~~~~vLV~D~GggT~Dvsv~~  153 (211)
                      -++|+-||-.|....-+ .+.-..-..||+.+.++.|..||.++.|+.       .-.|+|+|+-+|.++.+.
T Consensus       228 y~aVlVVpD~f~r~hveefl~ilL~eL~F~~~~v~QESlaatfGaGls-------s~CVVdiGAQkTsIaCVE  293 (618)
T KOG0797|consen  228 YHAVLVVPDTFDRRHVEEFLTILLGELGFNSAVVHQESLAATFGAGLS-------SACVVDIGAQKTSIACVE  293 (618)
T ss_pred             eeEEEEecchhhHHHHHHHHHHHHHHhccceEEEEhhhhHHHhcCCcc-------ceeEEEccCcceeEEEee
Confidence            46899999999875544 555556678999999999999999888775       359999999999988763

>PLN02666 5-oxoprolinase

Probab=90.05  E-value=0.25  Score=52.04  Aligned_cols=41  Identities=17%  Similarity=0.148  Sum_probs=30.9

Q ss_pred             eEEeechhHHHHHccccc-CCCCCceEEEeecCCCceEEEEE
Q psy471          112 MRIVNEPTAAALAYGLDK-NLKGERNVKLPKMLEPLLVLTLR  152 (211)
Q Consensus       112 ~~lv~EP~AAAl~y~~~~-~~~~~~~vLV~D~GggT~Dvsv~  152 (211)
                      ..+.+-|.|.++.+...- .....++++++||||.|||++++
T Consensus       290 ~ti~SGPAagv~Gaa~l~~~~~g~~~~I~~DmGGTTtDv~li  331 (1275)
T PLN02666        290 KAILSGPAGGVVGYAQTTFGLETEKPVIGFDMGGTSTDVSRY  331 (1275)
T ss_pred             CeEEECHHHHHHHHHHHhccccCCCCEEEEecCCceeeeEEE
Confidence            348888988887754432 22234689999999999999998

>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A

Probab=88.52  E-value=1.2  Score=39.80  Aligned_cols=60  Identities=15%  Similarity=0.090  Sum_probs=38.0

Q ss_pred             HHHHHHHHHHHHHhCCceeEEeechhHHHHHccccc-CC---CCCceEEEeecCCCceEEEEEe
Q psy471           94 DAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDK-NL---KGERNVKLPKMLEPLLVLTLRK  153 (211)
Q Consensus        94 ~~qR~al~~Aa~~aGl~~~~lv~EP~AAAl~y~~~~-~~---~~~~~vLV~D~GggT~Dvsv~~  153 (211)
                      ...-..+.++++.+|+++..+=-+|.|.+-.|.... ..   .....++++|+|+.++.++++.
T Consensus       135 k~~v~~~~~~~~~aGL~~~~vDv~~~Al~r~~~~~~~~~~~~~~~~~~~lvdiG~~~t~~~i~~  198 (340)
T PF11104_consen  135 KEIVESYVELFEEAGLKPVAVDVEAFALARLFEFLEPQLPDEEDAETVALVDIGASSTTVIIFQ  198 (340)
T ss_dssp             HHHHHHHHHHHHHTT-EEEEEEEHHHHGGGGGHHHHHTST----T-EEEEEEE-SS-EEEEEEE
T ss_pred             HHHHHHHHHHHHHcCCceEEEeehHHHHHHHHHHHHHhCCcccccceEEEEEecCCeEEEEEEE
Confidence            455667788899999999866555555544443321 11   2456799999999999999875

>COG5277 Actin and related proteins [Cytoskeleton]

Probab=87.77  E-value=3.1  Score=39.20  Aligned_cols=85  Identities=8%  Similarity=-0.019  Sum_probs=57.7

Q ss_pred             HHHHHHHHHHHHHHhhcc--ccceeeEccCCCccHHHHHHHHHH-HHHhCCceeEEeechhHHHHHcccccCCCCCceEE
Q psy471           62 LFQLLTKMKETAEAYLGH--SVRDAVITVPAYFNDAQRQATKDA-GAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVK  138 (211)
Q Consensus        62 ~a~iL~~L~~~a~~~~g~--~~~~vVItVPa~f~~~qR~al~~A-a~~aGl~~~~lv~EP~AAAl~y~~~~~~~~~~~vL  138 (211)
                      ..++.+++.... ..+..  .-..+++|-|..++..+|..+.+. .....+..+.+...+.+++++.+...     .+.+
T Consensus        86 ~e~~w~~~~~~~-~~~~~~~~~~pllltep~~n~~~~re~~~e~~fE~~~vp~~~~~~~~~l~~ya~g~~~-----~~g~  159 (444)
T COG5277          86 MEQIWDYTFFNK-GDLLPSPEEHPLLLTEPPLNPPSNREKITELLFETLNVPALYLAIQAVLSLYASGSSD-----ETGL  159 (444)
T ss_pred             HHHHHHHhhcch-hhccCCCcCCceEEeccCCCcHHHHHHHHHHHHHhcCCcceEeeHHHHHHHHhcCCCC-----CceE
Confidence            445555555443 12221  234699999999999888866655 56667777777777777776655431     4789


Q ss_pred             EeecCCCceEEEEE
Q psy471          139 LPKMLEPLLVLTLR  152 (211)
Q Consensus       139 V~D~GggT~Dvsv~  152 (211)
                      |+|+|.+.|+++=+
T Consensus       160 ViD~G~~~t~v~PV  173 (444)
T COG5277         160 VIDSGDSVTHVIPV  173 (444)
T ss_pred             EEEcCCCceeeEee
Confidence            99999999998754

>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein

Probab=84.15  E-value=0.79  Score=41.37  Aligned_cols=20  Identities=5%  Similarity=-0.230  Sum_probs=17.9

Q ss_pred             CceEEEeecCCCceEEEEEe
Q psy471          134 ERNVKLPKMLEPLLVLTLRK  153 (211)
Q Consensus       134 ~~~vLV~D~GggT~Dvsv~~  153 (211)
                      ..+++++||||.|+|+++++
T Consensus       127 ~~~~I~~DmGGTTtDi~~i~  146 (318)
T TIGR03123       127 IPECLFVDMGSTTTDIIPII  146 (318)
T ss_pred             CCCEEEEEcCccceeeEEec
Confidence            45699999999999999986

This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.

>TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase)

Probab=82.69  E-value=4  Score=35.72  Aligned_cols=71  Identities=24%  Similarity=0.183  Sum_probs=43.6

Q ss_pred             ccceeeEccCCCccHHH------------HHHHHHH-HHHhCCceeEEeechhHHHHHcccccCCCCCceEEEeecCCCc
Q psy471           80 SVRDAVITVPAYFNDAQ------------RQATKDA-GAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVKLPKMLEPL  146 (211)
Q Consensus        80 ~~~~vVItVPa~f~~~q------------R~al~~A-a~~aGl~~~~lv~EP~AAAl~y~~~~~~~~~~~vLV~D~GggT  146 (211)
                      ++..+.|++|..++...            ...+.+. .+..|++ +.+.|+..|+|++-.+.......++++++.+|.|-
T Consensus        57 ~i~gIgva~pG~vd~~~g~~~~~~~~~w~~~~l~~~l~~~~~~p-v~v~NDa~~~alaE~~~g~~~~~~~~~~v~igtGi  135 (318)
T TIGR00744        57 EIVAIGIGAPGPVNRQRGTVYFAVNLDWKQEPLKEKVEARVGLP-VVVENDANAAALGEYKKGAGKGARDVICITLGTGL  135 (318)
T ss_pred             ceEEEEEeccccccCCCCEEEecCCCCCCCCCHHHHHHHHHCCC-EEEechHHHHHHHHHHhcccCCCCcEEEEEeCCcc
Confidence            46678888887664321            1112222 2345776 44999999999876554333345778888888765


Q ss_pred             eEEEEE
Q psy471          147 LVLTLR  152 (211)
Q Consensus       147 ~Dvsv~  152 (211)
                       -.+++
T Consensus       136 -G~giv  140 (318)
T TIGR00744       136 -GGGII  140 (318)
T ss_pred             -EEEEE
Confidence             44443

This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution.

>COG2069 CdhD CO dehydrogenase/acetyl-CoA synthase delta subunit (corrinoid Fe-S protein) [Energy production and conversion]

Probab=82.65  E-value=2.4  Score=38.22  Aligned_cols=79  Identities=22%  Similarity=0.219  Sum_probs=47.2

Q ss_pred             HHHHHHHHHHhhccccceeeEccCCCccHHHHHHHHHHHHHhCCceeEEeechhHHHHHcccccCCC----------CCc
Q psy471           66 LTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLK----------GER  135 (211)
Q Consensus        66 L~~L~~~a~~~~g~~~~~vVItVPa~f~~~qR~al~~Aa~~aGl~~~~lv~EP~AAAl~y~~~~~~~----------~~~  135 (211)
                      ++++...|.++     .++|+|--..=-..||..=+... ..|++.-+||-+||.|||.||+.-...          ++.
T Consensus       240 y~~ia~AA~ky-----~H~VLswt~~D~N~qk~LNrkll-k~gl~r~~IVMDPTTcALGYGieyai~~m~RiRlaaLkGD  313 (403)
T COG2069         240 YERIAEAALKY-----DHVVLSWTQMDVNMQKTLNRKLL-KRGLPRDRIVMDPTTCALGYGIEYAITNMERIRLAALKGD  313 (403)
T ss_pred             HHHHHHHHHhc-----CceEEEeeccChHHHHHHHHHHH-HccCChhheeeccchhhhccceeeehhHHHHHHHHhccCc
Confidence            44455555433     34555322111123443333333 356999999999999999999876532          455


Q ss_pred             eEEEeecCCCceEEE
Q psy471          136 NVKLPKMLEPLLVLT  150 (211)
Q Consensus       136 ~vLV~D~GggT~Dvs  150 (211)
                      .-|-+=|-.|||...
T Consensus       314 ~~l~mPmSSGtTNAw  328 (403)
T COG2069         314 EDLQMPMSSGTTNAW  328 (403)
T ss_pred             ccccccccCCCcchh
Confidence            566677777877654

>cd06007 R3H_DEXH_helicase R3H domain of a group of proteins which also contain a DEXH-box helicase domain, and may function as ATP-dependent DNA or RNA helicases

Probab=80.61  E-value=5.2  Score=27.18  Aligned_cols=30  Identities=13%  Similarity=0.204  Sum_probs=27.4

Q ss_pred             eeeEccCCCccHHHHHHHHHHHHHhCCcee
Q psy471           83 DAVITVPAYFNDAQRQATKDAGAIAGLNVM  112 (211)
Q Consensus        83 ~vVItVPa~f~~~qR~al~~Aa~~aGl~~~  112 (211)
                      ...++.|+.++..+|..+-+.|...|+...
T Consensus        16 ~~~l~Fpp~ls~~eR~~vH~~a~~~gL~s~   45 (59)
T cd06007          16 NEEYEFPSSLTNHERAVIHRLCRKLGLKSK   45 (59)
T ss_pred             ccEEEcCCCCCHHHHHHHHHHHHHcCCCce
Confidence            677999999999999999999999998765

The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.

>PF08735 DUF1786: Putative pyruvate format-lyase activating enzyme (DUF1786); InterPro: IPR014846 This family is annotated as pyruvate formate-lyase activating enzyme (1

Probab=80.54  E-value=9  Score=33.57  Aligned_cols=72  Identities=19%  Similarity=0.246  Sum_probs=48.3

Q ss_pred             ccccceeeE--ccCCCccHHHHHHHHHHHHHhCCceeEEeechhHHHHHcc-cccCCCCCceEEEeecCCCceEEEEEe
Q psy471           78 GHSVRDAVI--TVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYG-LDKNLKGERNVKLPKMLEPLLVLTLRK  153 (211)
Q Consensus        78 g~~~~~vVI--tVPa~f~~~qR~al~~Aa~~aGl~~~~lv~EP~AAAl~y~-~~~~~~~~~~vLV~D~GggT~Dvsv~~  153 (211)
                      +..+...+-  .+|.+|+.  -+++++++...|.+.  +|-++-+||+.=+ ........+.++++|+|-|.|=..+++
T Consensus       111 g~~~~~~~y~~~~P~~~TR--m~av~~~~~~~~~~~--~vmDTg~AAvlGal~d~~v~~~~~~~~vniGN~HTlaa~v~  185 (254)
T PF08735_consen  111 GGRPESFVYADDPPPYFTR--MRAVRESLGGAGYDE--VVMDTGPAAVLGALCDPEVSSREGIIVVNIGNGHTLAALVK  185 (254)
T ss_pred             CCCHHHeeecCCCcHHHHH--HHHHHHHhccCCCCc--eEecCHHHHHhhhhcChhhhccCCeEEEEeCCccEEEEEEe
Confidence            445566666  78888553  456777777676666  5555555555433 333334678899999999999888874

97.1.4 from EC) in UniProt. It is not clear where this annotation comes from.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	211
3jxu_A	409	Crystal Structure Of The Human 70kda Heat Shock Pro		2e-29
2e8a_A	391	Crystal Structure Of The Human Hsp70 Atpase Domain		2e-29
2e88_A	391	Crystal Structure Of The Human Hsp70 Atpase Domain		2e-29
3a8y_A	392	Crystal Structure Of The Complex Between The Bag5 B		2e-29
3d2f_B	382	Crystal Structure Of A Complex Of Sse1p And Hsp70 L		2e-29
1s3x_A	382	The Crystal Structure Of The Human Hsp70 Atpase Dom		2e-29
1hjo_A	380	Atpase Domain Of Human Heat Shock 70kda Protein 1 L		2e-29
3fe1_A	403	Crystal Structure Of The Human 70kda Heat Shock Pro		2e-29
1yuw_A	554	Crystal Structure Of Bovine Hsc70(Aa1-554)e213aD214		3e-29
3c7n_B	554	Structure Of The Hsp110:hsc70 Nucleotide Exchange C		3e-29
3gdq_A	408	Crystal Structure Of The Human 70kda Heat Shock Pro		4e-29
1ba1_A	386	Heat-Shock Cognate 70kd Protein 44kd Atpase N-Termi		5e-29
2qw9_B	394	Crystal Structure Of Bovine Hsc70 (1-394aa)in The A		5e-29
1ba0_A	386	Heat-Shock Cognate 70kd Protein 44kd Atpase N-Termi		5e-29
1kax_A	381	70kd Heat Shock Cognate Protein Atpase Domain, K71m		5e-29
1ngg_A	386	Structural Basis Of The 70-Kilodalton Heat Shock Co		5e-29
1ngc_A	386	Structural Basis Of The 70-Kilodalton Heat Shock Co		5e-29
1nge_A	386	Structural Basis Of The 70-Kilodalton Heat Shock Co		5e-29
1bup_A	386	T13s Mutant Of Bovine 70 Kilodalton Heat Shock Prot		5e-29
1hpm_A	386	How Potassium Affects The Activity Of The Molecular		5e-29
1ngd_A	386	Structural Basis Of The 70-kilodalton Heat Shock Co		5e-29
1ngf_A	386	Structural Basis Of The 70-Kilodalton Heat Shock Co		5e-29
1ngh_A	386	Structural Basis Of The 70-Kilodalton Heat Shock Co		5e-29
2bup_A	381	T13g Mutant Of The Atpase Fragment Of Bovine Hsc70		5e-29
3cqx_A	386	Chaperone Complex Length = 386		6e-29
1hx1_A	400	Crystal Structure Of A Bag Domain In Complex With T		6e-29
1ats_A	386	Threonine 204 Of The Chaperone Protein Hsc70 Influe		6e-29
1kaz_A	381	70kd Heat Shock Cognate Protein Atpase Domain, K71e		6e-29
1atr_A	386	Threonine 204 Of The Chaperone Protein Hsc70 Influe		6e-29
2v7z_A	543	Crystal Structure Of The 70-Kda Heat Shock Cognate		6e-29
1kay_A	381	70kd Heat Shock Cognate Protein Atpase Domain, K71a		6e-29
3fzf_A	381	Crystal Structure Of Hsc70BAG1 IN COMPLEX WITH ATP		6e-29
3kvg_A	400	Crystal Structure Of The N-Terminal Domain Of Hsp70		8e-29
3ldl_A	384	Crystal Structure Of Human Grp78 (70kda Heat Shock		8e-29
3iuc_A	408	Crystal Structure Of The Human 70kda Heat Shock Pro		9e-29
1qqn_A	378	D206s Mutant Of Bovine 70 Kilodalton Heat Shock Pro		1e-28
1qqm_A	378	D199s Mutant Of Bovine 70 Kilodalton Heat Shock Pro		1e-28
3d2e_B	382	Crystal Structure Of A Complex Of Sse1p And Hsp70,		1e-28
1ngb_A	386	Structural Basis Of The 70-Kilodalton Heat Shock Co		1e-28
1nga_A	386	Structural Basis Of The 70-Kilodalton Heat Shock Co		2e-28
1qqo_A	378	E175s Mutant Of Bovine 70 Kilodalton Heat Shock Pro		5e-28
2qwn_A	394	Crystal Structure Of Disulfide-Bond-Crosslinked Com		8e-28
3i33_A	404	Crystal Structure Of The Human 70kda Heat Shock Pro		1e-26
4fsv_A	387	Crystal Structure Of A Heat Shock 70kda Protein 2 (		9e-26
3gl1_A	387	Crystal Structure Of Atpase Domain Of Ssb1 Chaperon		3e-25
3qfp_A	390	Crystal Structure Of Yeast Hsp70 (BipKAR2) ATPASE D		4e-25
3qfu_A	394	Crystal Structure Of Yeast Hsp70 (BipKAR2) COMPLEXE		4e-25
2kho_A	605	Nmr-Rdc XRAY STRUCTURE OF E. COLI HSP70 (DNAK) CHAP		6e-25
1dkg_D	383	Crystal Structure Of The Nucleotide Exchange Factor		1e-24
4b9q_A	605	Open Conformation Of Atp-Bound Hsp70 Homolog Dnak L		5e-24
2v7y_A	509	Crystal Structure Of The Molecular Chaperone Dnak F		7e-22
2qxl_A	658	Crystal Structure Analysis Of Sse1, A Yeast Hsp110		6e-08
3c7n_A	668	Structure Of The Hsp110:hsc70 Nucleotide Exchange C		7e-08
3d2e_A	675	Crystal Structure Of A Complex Of Sse1p And Hsp70,		7e-08
3d2f_A	675	Crystal Structure Of A Complex Of Sse1p And Hsp70 L		7e-08
4gni_A	409	Structure Of The Ssz1 Atpase Bound To Atp And Magne		4e-05

>pdb|3JXU|A Chain A, Crystal Structure Of The Human 70kda Heat Shock Protein 1a (Hsp70-1) Atpase Domain In Complex With Adp And Inorganic Phosphate Length = 409

Iteration: 1
 Score =  125 bits (314), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 59/73 (80%), Positives = 67/73 (91%)
Query: 65  LLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALA 124
           +LTKMKE AEAYLG+ V +AVITVPAYFND+QRQATKDAG IAGLNV+RI+NEPTAAA+A
Sbjct: 145 VLTKMKEIAEAYLGYPVTNAVITVPAYFNDSQRQATKDAGVIAGLNVLRIINEPTAAAIA 204
Query: 125 YGLDKNLKGERNV 137
           YGLD+  KGERNV
Sbjct: 205 YGLDRTGKGERNV 217

>pdb|2E8A|A Chain A, Crystal Structure Of The Human Hsp70 Atpase Domain In Complex With Amp-Pnp Length = 391

Iteration: 1
 Score =  125 bits (314), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 59/73 (80%), Positives = 67/73 (91%)
Query: 65  LLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALA 124
           +LTKMKE AEAYLG+ V +AVITVPAYFND+QRQATKDAG IAGLNV+RI+NEPTAAA+A
Sbjct: 126 VLTKMKEIAEAYLGYPVTNAVITVPAYFNDSQRQATKDAGVIAGLNVLRIINEPTAAAIA 185
Query: 125 YGLDKNLKGERNV 137
           YGLD+  KGERNV
Sbjct: 186 YGLDRTGKGERNV 198

>pdb|2E88|A Chain A, Crystal Structure Of The Human Hsp70 Atpase Domain In The Apo Form Length = 391

Iteration: 1
 Score =  125 bits (314), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 59/73 (80%), Positives = 67/73 (91%)
Query: 65  LLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALA 124
           +LTKMKE AEAYLG+ V +AVITVPAYFND+QRQATKDAG IAGLNV+RI+NEPTAAA+A
Sbjct: 126 VLTKMKEIAEAYLGYPVTNAVITVPAYFNDSQRQATKDAGVIAGLNVLRIINEPTAAAIA 185
Query: 125 YGLDKNLKGERNV 137
           YGLD+  KGERNV
Sbjct: 186 YGLDRTGKGERNV 198

>pdb|3A8Y|A Chain A, Crystal Structure Of The Complex Between The Bag5 Bd5 And Hsp70 Nbd Length = 392

Iteration: 1
 Score =  125 bits (314), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 59/73 (80%), Positives = 67/73 (91%)
Query: 65  LLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALA 124
           +LTKMKE AEAYLG+ V +AVITVPAYFND+QRQATKDAG IAGLNV+RI+NEPTAAA+A
Sbjct: 127 VLTKMKEIAEAYLGYPVTNAVITVPAYFNDSQRQATKDAGVIAGLNVLRIINEPTAAAIA 186
Query: 125 YGLDKNLKGERNV 137
           YGLD+  KGERNV
Sbjct: 187 YGLDRTGKGERNV 199

>pdb|3D2F|B Chain B, Crystal Structure Of A Complex Of Sse1p And Hsp70 Length = 382

Iteration: 1
 Score =  125 bits (314), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 59/73 (80%), Positives = 67/73 (91%)
Query: 65  LLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALA 124
           +LTKMKE AEAYLG+ V +AVITVPAYFND+QRQATKDAG IAGLNV+RI+NEPTAAA+A
Sbjct: 123 VLTKMKEIAEAYLGYPVTNAVITVPAYFNDSQRQATKDAGVIAGLNVLRIINEPTAAAIA 182
Query: 125 YGLDKNLKGERNV 137
           YGLD+  KGERNV
Sbjct: 183 YGLDRTGKGERNV 195

>pdb|1S3X|A Chain A, The Crystal Structure Of The Human Hsp70 Atpase Domain Length = 382

Iteration: 1
 Score =  125 bits (313), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 59/73 (80%), Positives = 67/73 (91%)
Query: 65  LLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALA 124
           +LTKMKE AEAYLG+ V +AVITVPAYFND+QRQATKDAG IAGLNV+RI+NEPTAAA+A
Sbjct: 123 VLTKMKEIAEAYLGYPVTNAVITVPAYFNDSQRQATKDAGVIAGLNVLRIINEPTAAAIA 182
Query: 125 YGLDKNLKGERNV 137
           YGLD+  KGERNV
Sbjct: 183 YGLDRTGKGERNV 195

>pdb|1HJO|A Chain A, Atpase Domain Of Human Heat Shock 70kda Protein 1 Length = 380

Iteration: 1
 Score =  125 bits (313), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 59/73 (80%), Positives = 67/73 (91%)
Query: 65  LLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALA 124
           +LTKMKE AEAYLG+ V +AVITVPAYFND+QRQATKDAG IAGLNV+RI+NEPTAAA+A
Sbjct: 121 VLTKMKEIAEAYLGYPVTNAVITVPAYFNDSQRQATKDAGVIAGLNVLRIINEPTAAAIA 180
Query: 125 YGLDKNLKGERNV 137
           YGLD+  KGERNV
Sbjct: 181 YGLDRTGKGERNV 193

>pdb|3FE1|A Chain A, Crystal Structure Of The Human 70kda Heat Shock Protein 6 (Hsp70b') Atpase Domain In Complex With Adp And Inorganic Phosphate Length = 403

Iteration: 1
 Score =  125 bits (313), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 59/73 (80%), Positives = 67/73 (91%)
Query: 65  LLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALA 124
           +L+KMKETAEAYLG  V+ AVITVPAYFND+QRQATKDAGAIAGLNV+RI+NEPTAAA+A
Sbjct: 143 VLSKMKETAEAYLGQPVKHAVITVPAYFNDSQRQATKDAGAIAGLNVLRIINEPTAAAIA 202
Query: 125 YGLDKNLKGERNV 137
           YGLD+   GERNV
Sbjct: 203 YGLDRRGAGERNV 215

>pdb|1YUW|A Chain A, Crystal Structure Of Bovine Hsc70(Aa1-554)e213aD214A MUTANT Length = 554

Iteration: 1
 Score =  124 bits (312), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 61/89 (68%), Positives = 70/89 (78%), Gaps = 5/89 (5%)
Query: 49  KSFSPRCCHHSPRLFQLLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAG 108
           KSF P           +LTKMKE AEAYLG +V +AV+TVPAYFND+QRQATKDAG IAG
Sbjct: 112 KSFYPEEVSS-----MVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAG 166
Query: 109 LNVMRIVNEPTAAALAYGLDKNLKGERNV 137
           LNV+RI+NEPTAAA+AYGLDK +  ERNV
Sbjct: 167 LNVLRIINEPTAAAIAYGLDKKVGAERNV 195

>pdb|3C7N|B Chain B, Structure Of The Hsp110:hsc70 Nucleotide Exchange Complex Length = 554

Iteration: 1
 Score =  124 bits (312), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 61/89 (68%), Positives = 70/89 (78%), Gaps = 5/89 (5%)
Query: 49  KSFSPRCCHHSPRLFQLLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAG 108
           KSF P           +LTKMKE AEAYLG +V +AV+TVPAYFND+QRQATKDAG IAG
Sbjct: 112 KSFYPEEVSS-----MVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAG 166
Query: 109 LNVMRIVNEPTAAALAYGLDKNLKGERNV 137
           LNV+RI+NEPTAAA+AYGLDK +  ERNV
Sbjct: 167 LNVLRIINEPTAAAIAYGLDKKVGAERNV 195

>pdb|3GDQ|A Chain A, Crystal Structure Of The Human 70kda Heat Shock Protein 1-Like Atpase Domain In Complex With Adp And Inorganic Phosphate Length = 408

Iteration: 1
 Score =  124 bits (311), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 58/73 (79%), Positives = 68/73 (93%)
Query: 65  LLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALA 124
           +LTK+KETAEA+LGH V +AVITVPAYFND+QRQATKDAG IAGLNV+RI+NEPTAAA+A
Sbjct: 147 VLTKLKETAEAFLGHPVTNAVITVPAYFNDSQRQATKDAGVIAGLNVLRIINEPTAAAIA 206
Query: 125 YGLDKNLKGERNV 137
           YGLDK  +GER+V
Sbjct: 207 YGLDKGGQGERHV 219

>pdb|1BA1|A Chain A, Heat-Shock Cognate 70kd Protein 44kd Atpase N-Terminal Mutant With Cys 17 Replaced By Lys Length = 386

Iteration: 1
 Score =  124 bits (310), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 61/89 (68%), Positives = 70/89 (78%), Gaps = 5/89 (5%)
Query: 49  KSFSPRCCHHSPRLFQLLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAG 108
           KSF P           +LTKMKE AEAYLG +V +AV+TVPAYFND+QRQATKDAG IAG
Sbjct: 112 KSFYPEEVSS-----MVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAG 166
Query: 109 LNVMRIVNEPTAAALAYGLDKNLKGERNV 137
           LNV+RI+NEPTAAA+AYGLDK +  ERNV
Sbjct: 167 LNVLRIINEPTAAAIAYGLDKKVGAERNV 195

>pdb|2QW9|B Chain B, Crystal Structure Of Bovine Hsc70 (1-394aa)in The Apo State Length = 394

Iteration: 1
 Score =  124 bits (310), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 61/89 (68%), Positives = 70/89 (78%), Gaps = 5/89 (5%)
Query: 49  KSFSPRCCHHSPRLFQLLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAG 108
           KSF P           +LTKMKE AEAYLG +V +AV+TVPAYFND+QRQATKDAG IAG
Sbjct: 112 KSFYPEEVSS-----MVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAG 166
Query: 109 LNVMRIVNEPTAAALAYGLDKNLKGERNV 137
           LNV+RI+NEPTAAA+AYGLDK +  ERNV
Sbjct: 167 LNVLRIINEPTAAAIAYGLDKKVGAERNV 195

>pdb|1BA0|A Chain A, Heat-Shock Cognate 70kd Protein 44kd Atpase N-Terminal 1nge 3 Length = 386

Iteration: 1
 Score =  124 bits (310), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 61/89 (68%), Positives = 70/89 (78%), Gaps = 5/89 (5%)
Query: 49  KSFSPRCCHHSPRLFQLLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAG 108
           KSF P           +LTKMKE AEAYLG +V +AV+TVPAYFND+QRQATKDAG IAG
Sbjct: 112 KSFYPEEVSS-----MVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAG 166
Query: 109 LNVMRIVNEPTAAALAYGLDKNLKGERNV 137
           LNV+RI+NEPTAAA+AYGLDK +  ERNV
Sbjct: 167 LNVLRIINEPTAAAIAYGLDKKVGAERNV 195

>pdb|1KAX|A Chain A, 70kd Heat Shock Cognate Protein Atpase Domain, K71m Mutant Length = 381

Iteration: 1
 Score =  124 bits (310), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 61/89 (68%), Positives = 70/89 (78%), Gaps = 5/89 (5%)
Query: 49  KSFSPRCCHHSPRLFQLLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAG 108
           KSF P           +LTKMKE AEAYLG +V +AV+TVPAYFND+QRQATKDAG IAG
Sbjct: 112 KSFYPEEVSS-----MVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAG 166
Query: 109 LNVMRIVNEPTAAALAYGLDKNLKGERNV 137
           LNV+RI+NEPTAAA+AYGLDK +  ERNV
Sbjct: 167 LNVLRIINEPTAAAIAYGLDKKVGAERNV 195

>pdb|1NGG|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386

Iteration: 1
 Score =  124 bits (310), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 61/89 (68%), Positives = 70/89 (78%), Gaps = 5/89 (5%)
Query: 49  KSFSPRCCHHSPRLFQLLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAG 108
           KSF P           +LTKMKE AEAYLG +V +AV+TVPAYFND+QRQATKDAG IAG
Sbjct: 112 KSFYPEEVSS-----MVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAG 166
Query: 109 LNVMRIVNEPTAAALAYGLDKNLKGERNV 137
           LNV+RI+NEPTAAA+AYGLDK +  ERNV
Sbjct: 167 LNVLRIINEPTAAAIAYGLDKKVGAERNV 195

>pdb|1NGC|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386

Iteration: 1
 Score =  124 bits (310), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 61/89 (68%), Positives = 70/89 (78%), Gaps = 5/89 (5%)
Query: 49  KSFSPRCCHHSPRLFQLLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAG 108
           KSF P           +LTKMKE AEAYLG +V +AV+TVPAYFND+QRQATKDAG IAG
Sbjct: 112 KSFYPEEVSS-----MVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAG 166
Query: 109 LNVMRIVNEPTAAALAYGLDKNLKGERNV 137
           LNV+RI+NEPTAAA+AYGLDK +  ERNV
Sbjct: 167 LNVLRIINEPTAAAIAYGLDKKVGAERNV 195

>pdb|1NGE|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386

Iteration: 1
 Score =  124 bits (310), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 61/89 (68%), Positives = 70/89 (78%), Gaps = 5/89 (5%)
Query: 49  KSFSPRCCHHSPRLFQLLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAG 108
           KSF P           +LTKMKE AEAYLG +V +AV+TVPAYFND+QRQATKDAG IAG
Sbjct: 112 KSFYPEEVSS-----MVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAG 166
Query: 109 LNVMRIVNEPTAAALAYGLDKNLKGERNV 137
           LNV+RI+NEPTAAA+AYGLDK +  ERNV
Sbjct: 167 LNVLRIINEPTAAAIAYGLDKKVGAERNV 195

>pdb|1BUP|A Chain A, T13s Mutant Of Bovine 70 Kilodalton Heat Shock Protein Length = 386

Iteration: 1
 Score =  124 bits (310), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 61/89 (68%), Positives = 70/89 (78%), Gaps = 5/89 (5%)
Query: 49  KSFSPRCCHHSPRLFQLLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAG 108
           KSF P           +LTKMKE AEAYLG +V +AV+TVPAYFND+QRQATKDAG IAG
Sbjct: 112 KSFYPEEVSS-----MVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAG 166
Query: 109 LNVMRIVNEPTAAALAYGLDKNLKGERNV 137
           LNV+RI+NEPTAAA+AYGLDK +  ERNV
Sbjct: 167 LNVLRIINEPTAAAIAYGLDKKVGAERNV 195

>pdb|1HPM|A Chain A, How Potassium Affects The Activity Of The Molecular Chaperone Hsc70. Ii. Potassium Binds Specifically In The Atpase Active Site Length = 386

Iteration: 1
 Score =  124 bits (310), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 61/89 (68%), Positives = 70/89 (78%), Gaps = 5/89 (5%)
Query: 49  KSFSPRCCHHSPRLFQLLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAG 108
           KSF P           +LTKMKE AEAYLG +V +AV+TVPAYFND+QRQATKDAG IAG
Sbjct: 112 KSFYPEEVSS-----MVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAG 166
Query: 109 LNVMRIVNEPTAAALAYGLDKNLKGERNV 137
           LNV+RI+NEPTAAA+AYGLDK +  ERNV
Sbjct: 167 LNVLRIINEPTAAAIAYGLDKKVGAERNV 195

>pdb|1NGD|A Chain A, Structural Basis Of The 70-kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386

Iteration: 1
 Score =  124 bits (310), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 61/89 (68%), Positives = 70/89 (78%), Gaps = 5/89 (5%)
Query: 49  KSFSPRCCHHSPRLFQLLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAG 108
           KSF P           +LTKMKE AEAYLG +V +AV+TVPAYFND+QRQATKDAG IAG
Sbjct: 112 KSFYPEEVSS-----MVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAG 166
Query: 109 LNVMRIVNEPTAAALAYGLDKNLKGERNV 137
           LNV+RI+NEPTAAA+AYGLDK +  ERNV
Sbjct: 167 LNVLRIINEPTAAAIAYGLDKKVGAERNV 195

>pdb|1NGF|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386

Iteration: 1
 Score =  124 bits (310), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 61/89 (68%), Positives = 70/89 (78%), Gaps = 5/89 (5%)
Query: 49  KSFSPRCCHHSPRLFQLLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAG 108
           KSF P           +LTKMKE AEAYLG +V +AV+TVPAYFND+QRQATKDAG IAG
Sbjct: 112 KSFYPEEVSS-----MVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAG 166
Query: 109 LNVMRIVNEPTAAALAYGLDKNLKGERNV 137
           LNV+RI+NEPTAAA+AYGLDK +  ERNV
Sbjct: 167 LNVLRIINEPTAAAIAYGLDKKVGAERNV 195

>pdb|1NGH|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386

Iteration: 1
 Score =  124 bits (310), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 61/89 (68%), Positives = 70/89 (78%), Gaps = 5/89 (5%)
Query: 49  KSFSPRCCHHSPRLFQLLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAG 108
           KSF P           +LTKMKE AEAYLG +V +AV+TVPAYFND+QRQATKDAG IAG
Sbjct: 112 KSFYPEEVSS-----MVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAG 166
Query: 109 LNVMRIVNEPTAAALAYGLDKNLKGERNV 137
           LNV+RI+NEPTAAA+AYGLDK +  ERNV
Sbjct: 167 LNVLRIINEPTAAAIAYGLDKKVGAERNV 195

>pdb|2BUP|A Chain A, T13g Mutant Of The Atpase Fragment Of Bovine Hsc70 Length = 381

Iteration: 1
 Score =  124 bits (310), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 61/89 (68%), Positives = 70/89 (78%), Gaps = 5/89 (5%)
Query: 49  KSFSPRCCHHSPRLFQLLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAG 108
           KSF P           +LTKMKE AEAYLG +V +AV+TVPAYFND+QRQATKDAG IAG
Sbjct: 112 KSFYPEEVSS-----MVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAG 166
Query: 109 LNVMRIVNEPTAAALAYGLDKNLKGERNV 137
           LNV+RI+NEPTAAA+AYGLDK +  ERNV
Sbjct: 167 LNVLRIINEPTAAAIAYGLDKKVGAERNV 195

>pdb|3CQX|A Chain A, Chaperone Complex Length = 386

Iteration: 1
 Score =  124 bits (310), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 61/89 (68%), Positives = 70/89 (78%), Gaps = 5/89 (5%)
Query: 49  KSFSPRCCHHSPRLFQLLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAG 108
           KSF P           +LTKMKE AEAYLG +V +AV+TVPAYFND+QRQATKDAG IAG
Sbjct: 117 KSFYPEEVSS-----MVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAG 171
Query: 109 LNVMRIVNEPTAAALAYGLDKNLKGERNV 137
           LNV+RI+NEPTAAA+AYGLDK +  ERNV
Sbjct: 172 LNVLRIINEPTAAAIAYGLDKKVGAERNV 200

>pdb|1HX1|A Chain A, Crystal Structure Of A Bag Domain In Complex With The Hsc70 Atpase Domain Length = 400

Iteration: 1
 Score =  124 bits (310), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 61/89 (68%), Positives = 70/89 (78%), Gaps = 5/89 (5%)
Query: 49  KSFSPRCCHHSPRLFQLLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAG 108
           KSF P           +LTKMKE AEAYLG +V +AV+TVPAYFND+QRQATKDAG IAG
Sbjct: 131 KSFYPEEVSS-----MVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAG 185
Query: 109 LNVMRIVNEPTAAALAYGLDKNLKGERNV 137
           LNV+RI+NEPTAAA+AYGLDK +  ERNV
Sbjct: 186 LNVLRIINEPTAAAIAYGLDKKVGAERNV 214

>pdb|1ATS|A Chain A, Threonine 204 Of The Chaperone Protein Hsc70 Influences The Structure Of The Active Site But Is Not Essential For Atp Hydrolysis Length = 386

Iteration: 1
 Score =  124 bits (310), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 61/89 (68%), Positives = 70/89 (78%), Gaps = 5/89 (5%)
Query: 49  KSFSPRCCHHSPRLFQLLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAG 108
           KSF P           +LTKMKE AEAYLG +V +AV+TVPAYFND+QRQATKDAG IAG
Sbjct: 112 KSFYPEEVSS-----MVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAG 166
Query: 109 LNVMRIVNEPTAAALAYGLDKNLKGERNV 137
           LNV+RI+NEPTAAA+AYGLDK +  ERNV
Sbjct: 167 LNVLRIINEPTAAAIAYGLDKKVGAERNV 195

>pdb|1KAZ|A Chain A, 70kd Heat Shock Cognate Protein Atpase Domain, K71e Mutant Length = 381

Iteration: 1
 Score =  124 bits (310), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 61/89 (68%), Positives = 70/89 (78%), Gaps = 5/89 (5%)
Query: 49  KSFSPRCCHHSPRLFQLLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAG 108
           KSF P           +LTKMKE AEAYLG +V +AV+TVPAYFND+QRQATKDAG IAG
Sbjct: 112 KSFYPEEVSS-----MVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAG 166
Query: 109 LNVMRIVNEPTAAALAYGLDKNLKGERNV 137
           LNV+RI+NEPTAAA+AYGLDK +  ERNV
Sbjct: 167 LNVLRIINEPTAAAIAYGLDKKVGAERNV 195

>pdb|1ATR|A Chain A, Threonine 204 Of The Chaperone Protein Hsc70 Influences The Structure Of The Active Site But Is Not Essential For Atp Hydrolysis Length = 386

Iteration: 1
 Score =  123 bits (309), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 61/89 (68%), Positives = 70/89 (78%), Gaps = 5/89 (5%)
Query: 49  KSFSPRCCHHSPRLFQLLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAG 108
           KSF P           +LTKMKE AEAYLG +V +AV+TVPAYFND+QRQATKDAG IAG
Sbjct: 112 KSFYPEEVSS-----MVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAG 166
Query: 109 LNVMRIVNEPTAAALAYGLDKNLKGERNV 137
           LNV+RI+NEPTAAA+AYGLDK +  ERNV
Sbjct: 167 LNVLRIINEPTAAAIAYGLDKKVGAERNV 195

>pdb|2V7Z|A Chain A, Crystal Structure Of The 70-Kda Heat Shock Cognate Protein From Rattus Norvegicus In Post-Atp Hydrolysis State Length = 543

Iteration: 1
 Score =  123 bits (309), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 60/89 (67%), Positives = 70/89 (78%), Gaps = 5/89 (5%)
Query: 49  KSFSPRCCHHSPRLFQLLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAG 108
           KSF P           +LTKMKE AEAYLG +V +AV+TVPAYFND+QRQA KDAG IAG
Sbjct: 112 KSFYPEEVSS-----MVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQAAKDAGTIAG 166
Query: 109 LNVMRIVNEPTAAALAYGLDKNLKGERNV 137
           LNV+RI+NEPTAAA+AYGLDK ++ ERNV
Sbjct: 167 LNVLRIINEPTAAAIAYGLDKKVRAERNV 195

>pdb|1KAY|A Chain A, 70kd Heat Shock Cognate Protein Atpase Domain, K71a Mutant Length = 381

Iteration: 1
 Score =  123 bits (309), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 61/89 (68%), Positives = 70/89 (78%), Gaps = 5/89 (5%)
Query: 49  KSFSPRCCHHSPRLFQLLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAG 108
           KSF P           +LTKMKE AEAYLG +V +AV+TVPAYFND+QRQATKDAG IAG
Sbjct: 112 KSFYPEEVSS-----MVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAG 166
Query: 109 LNVMRIVNEPTAAALAYGLDKNLKGERNV 137
           LNV+RI+NEPTAAA+AYGLDK +  ERNV
Sbjct: 167 LNVLRIINEPTAAAIAYGLDKKVGAERNV 195

>pdb|3FZF|A Chain A, Crystal Structure Of Hsc70BAG1 IN COMPLEX WITH ATP Length = 381

Iteration: 1
 Score =  123 bits (309), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 61/89 (68%), Positives = 70/89 (78%), Gaps = 5/89 (5%)
Query: 49  KSFSPRCCHHSPRLFQLLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAG 108
           KSF P           +LTKMKE AEAYLG +V +AV+TVPAYFND+QRQATKDAG IAG
Sbjct: 112 KSFYPEEVSS-----MVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAG 166
Query: 109 LNVMRIVNEPTAAALAYGLDKNLKGERNV 137
           LNV+RI+NEPTAAA+AYGLDK +  ERNV
Sbjct: 167 LNVLRIINEPTAAAIAYGLDKKVGAERNV 195

>pdb|3KVG|A Chain A, Crystal Structure Of The N-Terminal Domain Of Hsp70 (Cgd2_20) From Cryptosporidium Parvum In Complex With Amppnp Length = 400

Iteration: 1
 Score =  123 bits (308), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 57/73 (78%), Positives = 66/73 (90%)
Query: 65  LLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALA 124
           +L KMKE +EAYLG  +++AV+TVPAYFND+QRQATKDAGAIAGLNVMRI+NEPTAAA+A
Sbjct: 139 VLQKMKEISEAYLGRQIKNAVVTVPAYFNDSQRQATKDAGAIAGLNVMRIINEPTAAAIA 198
Query: 125 YGLDKNLKGERNV 137
           YGLDK   GERNV
Sbjct: 199 YGLDKKGTGERNV 211

>pdb|3LDL|A Chain A, Crystal Structure Of Human Grp78 (70kda Heat Shock Protein 5 BIP) Atpase Domain In Complex With Atp Length = 384

Iteration: 1
 Score =  123 bits (308), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 62/89 (69%), Positives = 71/89 (79%), Gaps = 6/89 (6%)
Query: 49  KSFSPRCCHHSPRLFQLLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAG 108
           K+F+P           +LTKMKETAEAYLG  V  AV+TVPAYFNDAQRQATKDAG IAG
Sbjct: 115 KTFAPEEISA-----MVLTKMKETAEAYLGKKVTHAVVTVPAYFNDAQRQATKDAGTIAG 169
Query: 109 LNVMRIVNEPTAAALAYGLDKNLKGERNV 137
           LNVMRI+NEPTAAA+AYGLDK  +GE+N+
Sbjct: 170 LNVMRIINEPTAAAIAYGLDKR-EGEKNI 197

>pdb|3IUC|A Chain A, Crystal Structure Of The Human 70kda Heat Shock Protein 5 (BipGRP78) ATPASE DOMAIN IN COMPLEX WITH ADP Length = 408

Iteration: 1
 Score =  123 bits (308), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 62/89 (69%), Positives = 71/89 (79%), Gaps = 6/89 (6%)
Query: 49  KSFSPRCCHHSPRLFQLLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAG 108
           K+F+P           +LTKMKETAEAYLG  V  AV+TVPAYFNDAQRQATKDAG IAG
Sbjct: 136 KTFAPEEISA-----MVLTKMKETAEAYLGKKVTHAVVTVPAYFNDAQRQATKDAGTIAG 190
Query: 109 LNVMRIVNEPTAAALAYGLDKNLKGERNV 137
           LNVMRI+NEPTAAA+AYGLDK  +GE+N+
Sbjct: 191 LNVMRIINEPTAAAIAYGLDKR-EGEKNI 218

>pdb|1QQN|A Chain A, D206s Mutant Of Bovine 70 Kilodalton Heat Shock Protein Length = 378

Iteration: 1
 Score =  122 bits (307), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 61/89 (68%), Positives = 70/89 (78%), Gaps = 5/89 (5%)
Query: 49  KSFSPRCCHHSPRLFQLLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAG 108
           KSF P           +LTKMKE AEAYLG +V +AV+TVPAYFND+QRQATKDAG IAG
Sbjct: 109 KSFYPEEVSS-----MVLTKMKEIAEAYLGATVTNAVVTVPAYFNDSQRQATKDAGTIAG 163
Query: 109 LNVMRIVNEPTAAALAYGLDKNLKGERNV 137
           LNV+RI+NEPTAAA+AYGLDK +  ERNV
Sbjct: 164 LNVLRIINEPTAAAIAYGLDKAVGAERNV 192

>pdb|1QQM|A Chain A, D199s Mutant Of Bovine 70 Kilodalton Heat Shock Protein Length = 378

Iteration: 1
 Score =  122 bits (307), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 61/89 (68%), Positives = 70/89 (78%), Gaps = 5/89 (5%)
Query: 49  KSFSPRCCHHSPRLFQLLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAG 108
           KSF P           +LTKMKE AEAYLG +V +AV+TVPAYFND+QRQATKDAG IAG
Sbjct: 109 KSFYPEEVSS-----MVLTKMKEIAEAYLGATVTNAVVTVPAYFNDSQRQATKDAGTIAG 163
Query: 109 LNVMRIVNEPTAAALAYGLDKNLKGERNV 137
           LNV+RI+NEPTAAA+AYGLDK +  ERNV
Sbjct: 164 LNVLRIINEPTAAAIAYGLDKAVGAERNV 192

>pdb|3D2E|B Chain B, Crystal Structure Of A Complex Of Sse1p And Hsp70, Selenomethionine- Labeled Crystals Length = 382

Iteration: 1
 Score =  122 bits (306), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 58/73 (79%), Positives = 66/73 (90%)
Query: 65  LLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALA 124
           +LTK KE AEAYLG+ V +AVITVPAYFND+QRQATKDAG IAGLNV+RI+NEPTAAA+A
Sbjct: 123 VLTKXKEIAEAYLGYPVTNAVITVPAYFNDSQRQATKDAGVIAGLNVLRIINEPTAAAIA 182
Query: 125 YGLDKNLKGERNV 137
           YGLD+  KGERNV
Sbjct: 183 YGLDRTGKGERNV 195

>pdb|1NGB|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386

Iteration: 1
 Score =  122 bits (306), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 60/89 (67%), Positives = 70/89 (78%), Gaps = 5/89 (5%)
Query: 49  KSFSPRCCHHSPRLFQLLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAG 108
           KSF P           +LTKMKE AEAYLG +V +AV+TVPAYFND+QRQATKDAG IAG
Sbjct: 112 KSFYPEEVSS-----MVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAG 166
Query: 109 LNVMRIVNEPTAAALAYGLDKNLKGERNV 137
           LNV+RI+N+PTAAA+AYGLDK +  ERNV
Sbjct: 167 LNVLRIINQPTAAAIAYGLDKKVGAERNV 195

>pdb|1NGA|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386

Iteration: 1
 Score =  121 bits (304), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 60/89 (67%), Positives = 69/89 (77%), Gaps = 5/89 (5%)
Query: 49  KSFSPRCCHHSPRLFQLLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAG 108
           KSF P           +LTKMKE AEAYLG +V +AV+TVPAYFND+QRQATKDAG IAG
Sbjct: 112 KSFYPEEVSS-----MVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAG 166
Query: 109 LNVMRIVNEPTAAALAYGLDKNLKGERNV 137
           LNV+RI+N PTAAA+AYGLDK +  ERNV
Sbjct: 167 LNVLRIINSPTAAAIAYGLDKKVGAERNV 195

>pdb|1QQO|A Chain A, E175s Mutant Of Bovine 70 Kilodalton Heat Shock Protein Length = 378

Iteration: 1
 Score =  120 bits (301), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 60/89 (67%), Positives = 69/89 (77%), Gaps = 5/89 (5%)
Query: 49  KSFSPRCCHHSPRLFQLLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAG 108
           KSF P           +LTKMKE AEAYLG +V +AV+TVPAYFND+QRQATKDAG IAG
Sbjct: 109 KSFYPEEVSS-----MVLTKMKEIAEAYLGATVTNAVVTVPAYFNDSQRQATKDAGTIAG 163
Query: 109 LNVMRIVNEPTAAALAYGLDKNLKGERNV 137
           LNV+RI+N PTAAA+AYGLDK +  ERNV
Sbjct: 164 LNVLRIINSPTAAAIAYGLDKAVGAERNV 192

>pdb|2QWN|A Chain A, Crystal Structure Of Disulfide-Bond-Crosslinked Complex Of Bovine Hsc70 (1-386aa)r171c And Bovine Auxilin (810-910aa)d876c In The AdpPi State Length = 394

Iteration: 1
 Score =  120 bits (300), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 60/89 (67%), Positives = 69/89 (77%), Gaps = 5/89 (5%)
Query: 49  KSFSPRCCHHSPRLFQLLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAG 108
           KSF P           +LTKMKE AEAYLG +V +AV+TVPAYFND+QRQATKDAG IAG
Sbjct: 112 KSFYPEEVSS-----MVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAG 166
Query: 109 LNVMRIVNEPTAAALAYGLDKNLKGERNV 137
           LNV+ I+NEPTAAA+AYGLDK +  ERNV
Sbjct: 167 LNVLCIINEPTAAAIAYGLDKKVGAERNV 195

>pdb|3I33|A Chain A, Crystal Structure Of The Human 70kda Heat Shock Protein 2 (Hsp70-2) Atpase Domain In Complex With Adp And Inorganic Phosphate Length = 404

Iteration: 1
 Score =  115 bits (289), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 57/75 (76%), Positives = 63/75 (84%), Gaps = 2/75 (2%)
Query: 65  LLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALA 124
           +LTKMKE AEAYLG  V  AVITVPAYFND+QRQATKDAG I GLNV+RI+NEPTAAA+A
Sbjct: 142 VLTKMKEIAEAYLGGKVHSAVITVPAYFNDSQRQATKDAGTITGLNVLRIINEPTAAAIA 201
Query: 125 YGLDKN--LKGERNV 137
           YGLDK     GE+NV
Sbjct: 202 YGLDKKGCAGGEKNV 216

>pdb|4FSV|A Chain A, Crystal Structure Of A Heat Shock 70kda Protein 2 (Hspa2) From Homo Sapiens At 1.80 A Resolution Length = 387

Iteration: 1
 Score =  113 bits (282), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 56/75 (74%), Positives = 62/75 (82%), Gaps = 2/75 (2%)
Query: 65  LLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALA 124
           +LTK KE AEAYLG  V  AVITVPAYFND+QRQATKDAG I GLNV+RI+NEPTAAA+A
Sbjct: 124 VLTKXKEIAEAYLGGKVHSAVITVPAYFNDSQRQATKDAGTITGLNVLRIINEPTAAAIA 183
Query: 125 YGLDKN--LKGERNV 137
           YGLDK     GE+NV
Sbjct: 184 YGLDKKGCAGGEKNV 198

>pdb|3GL1|A Chain A, Crystal Structure Of Atpase Domain Of Ssb1 Chaperone, A Member Of The Hsp70 Family, From Saccharomyces Cerevisiae Length = 387

Iteration: 1
 Score =  111 bits (277), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 56/90 (62%), Positives = 67/90 (74%), Gaps = 5/90 (5%)
Query: 38  PEWDYGHVRLRKSFSPRCCHHSPRLFQLLTKMKETAEAYLGHSVRDAVITVPAYFNDAQR 97
           P  +  ++   K+FSP+          +LTKMKE AEA +G  V  AVITVPAYFNDAQR
Sbjct: 106 PVIEVQYLEETKTFSPQEISA-----MVLTKMKEIAEAKIGKKVEKAVITVPAYFNDAQR 160
Query: 98  QATKDAGAIAGLNVMRIVNEPTAAALAYGL 127
           QATKDAGAI+GLNV+RI+NEPTAAA+AYGL
Sbjct: 161 QATKDAGAISGLNVLRIINEPTAAAIAYGL 190

>pdb|3QFP|A Chain A, Crystal Structure Of Yeast Hsp70 (BipKAR2) ATPASE DOMAIN Length = 390

Iteration: 1
 Score =  110 bits (276), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 56/85 (65%), Positives = 64/85 (75%), Gaps = 5/85 (5%)
Query: 48  RKSFSPRCCHHSPRLFQLLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIA 107
           +K F+P           +L KMK+ AE YLG  V  AV+TVPAYFNDAQRQATKDAG IA
Sbjct: 121 KKVFTPEEISG-----MILGKMKQIAEDYLGTKVTHAVVTVPAYFNDAQRQATKDAGTIA 175
Query: 108 GLNVMRIVNEPTAAALAYGLDKNLK 132
           GLNV+RIVNEPTAAA+AYGLDK+ K
Sbjct: 176 GLNVLRIVNEPTAAAIAYGLDKSDK 200

>pdb|2KHO|A Chain A, Nmr-Rdc XRAY STRUCTURE OF E. COLI HSP70 (DNAK) CHAPERONE (1-605) Complexed With Adp And Substrate Length = 605

Iteration: 1
 Score =  110 bits (275), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 55/76 (72%), Positives = 62/76 (81%), Gaps = 1/76 (1%)
Query: 64  QLLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAAL 123
           ++L KMK+TAE YLG  V +AVITVPAYFNDAQRQATKDAG IAGL V RI+NEPTAAAL
Sbjct: 118 EVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAAL 177
Query: 124 AYGLDKNLKGERNVKL 139
           AYGLDK   G R + +
Sbjct: 178 AYGLDKGT-GNRTIAV 192

>pdb|1DKG|D Chain D, Crystal Structure Of The Nucleotide Exchange Factor Grpe Bound To The Atpase Domain Of The Molecular Chaperone Dnak Length = 383

Iteration: 1
 Score =  109 bits (273), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 55/76 (72%), Positives = 62/76 (81%), Gaps = 1/76 (1%)
Query: 64  QLLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAAL 123
           ++L KMK+TAE YLG  V +AVITVPAYFNDAQRQATKDAG IAGL V RI+NEPTAAAL
Sbjct: 118 EVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAAL 177
Query: 124 AYGLDKNLKGERNVKL 139
           AYGLDK   G R + +
Sbjct: 178 AYGLDKG-TGNRTIAV 192

>pdb|4B9Q|A Chain A, Open Conformation Of Atp-Bound Hsp70 Homolog Dnak Length = 605

Iteration: 1
 Score =  107 bits (267), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 54/76 (71%), Positives = 61/76 (80%), Gaps = 1/76 (1%)
Query: 64  QLLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAAL 123
           ++L K K+TAE YLG  V +AVITVPAYFNDAQRQATKDAG IAGL V RI+NEPTAAAL
Sbjct: 118 EVLKKXKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAAL 177
Query: 124 AYGLDKNLKGERNVKL 139
           AYGLDK   G R + +
Sbjct: 178 AYGLDKGT-GNRTIAV 192

>pdb|2V7Y|A Chain A, Crystal Structure Of The Molecular Chaperone Dnak From Geobacillus Kaustophilus Hta426 In Post-Atp Hydrolysis State Length = 509

Iteration: 1
 Score =  100 bits (248), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 50/65 (76%), Positives = 53/65 (81%)
Query: 65  LLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALA 124
           +L  +K  AE YLG  V  AVITVPAYFNDAQRQATKDAG IAGL V RI+NEPTAAALA
Sbjct: 93  ILQYLKSYAEDYLGEPVTRAVITVPAYFNDAQRQATKDAGRIAGLEVERIINEPTAAALA 152
Query: 125 YGLDK 129
           YGLDK
Sbjct: 153 YGLDK 157

>pdb|2QXL|A Chain A, Crystal Structure Analysis Of Sse1, A Yeast Hsp110 Length = 658

Iteration: 1
 Score = 53.9 bits (128), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 40/65 (61%)
Query: 65  LLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALA 124
            + K+K+T +     ++ D  I VP ++ + QR    DA  IAGLN +RIVN+ TAA ++
Sbjct: 121 FIDKVKDTVKQDTKANITDVCIAVPPWYTEEQRYNIADAARIAGLNPVRIVNDVTAAGVS 180
Query: 125 YGLDK 129
           YG+ K
Sbjct: 181 YGIFK 185

>pdb|3C7N|A Chain A, Structure Of The Hsp110:hsc70 Nucleotide Exchange Complex Length = 668

Iteration: 1
 Score = 53.9 bits (128), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 40/65 (61%)
Query: 65  LLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALA 124
            + K+K+T +     ++ D  I VP ++ + QR    DA  IAGLN +RIVN+ TAA ++
Sbjct: 124 FIDKVKDTVKQDTKANITDVCIAVPPWYTEEQRYNIADAARIAGLNPVRIVNDVTAAGVS 183
Query: 125 YGLDK 129
           YG+ K
Sbjct: 184 YGIFK 188

>pdb|3D2E|A Chain A, Crystal Structure Of A Complex Of Sse1p And Hsp70, Selenomethionine- Labeled Crystals Length = 675

Iteration: 1
 Score = 53.9 bits (128), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 26/65 (40%), Positives = 40/65 (61%)
Query: 65  LLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALA 124
            + K+K+T +     ++ D  I VP ++ + QR    DA  IAGLN +RIVN+ TAA ++
Sbjct: 122 FIDKVKDTVKQDTKANITDVCIAVPPWYTEEQRYNIADAARIAGLNPVRIVNDVTAAGVS 181
Query: 125 YGLDK 129
           YG+ K
Sbjct: 182 YGIFK 186

>pdb|3D2F|A Chain A, Crystal Structure Of A Complex Of Sse1p And Hsp70 Length = 675

Iteration: 1
 Score = 53.5 bits (127), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 40/65 (61%)
Query: 65  LLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALA 124
            + K+K+T +     ++ D  I VP ++ + QR    DA  IAGLN +RIVN+ TAA ++
Sbjct: 122 FIDKVKDTVKQDTKANITDVCIAVPPWYTEEQRYNIADAARIAGLNPVRIVNDVTAAGVS 181
Query: 125 YGLDK 129
           YG+ K
Sbjct: 182 YGIFK 186

>pdb|4GNI|A Chain A, Structure Of The Ssz1 Atpase Bound To Atp And Magnesium Length = 409

Iteration: 1
 Score = 44.3 bits (103), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 26/60 (43%), Positives = 36/60 (60%)
Query: 66  LTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAY 125
           L ++   A  YLG  V  AVIT+P  F + Q+ A   A A A L V+++++EP AA LAY
Sbjct: 135 LRRLVGAASEYLGKKVTSAVITIPTNFTEKQKAALIAAAAAADLEVLQLISEPAAAVLAY 194

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	211
4b9q_A	605	Chaperone protein DNAK; HET: ATP; 2.40A {Escherich	99.92
1yuw_A	554	Heat shock cognate 71 kDa protein; chaperone; 2.60	99.92
2kho_A	605	Heat shock protein 70; molecular chaperone, HSP70,	99.91
3d2f_A	675	Heat shock protein homolog SSE1; nucleotide exchan	99.9
3i33_A	404	Heat shock-related 70 kDa protein 2; protein-ADP c	99.9
2v7y_A	509	Chaperone protein DNAK; HSP70, heat shock protein,	99.9
4gni_A	409	Putative heat shock protein; HSP70-type ATPase, AT	99.89
3qfu_A	394	78 kDa glucose-regulated protein homolog; HSP70, K	99.89
1dkg_D	383	Molecular chaperone DNAK; HSP70, GRPE, nucleotide	99.86
1jce_A	344	ROD shape-determining protein MREB; MBL, actin, HS	99.67
2fsj_A	346	Hypothetical protein TA0583; actin homologs, archa	99.47
3h1q_A	272	Ethanolamine utilization protein EUTJ; ethanolamin	99.26
1k8k_A	418	ARP3, actin-like protein 3, actin-2; beta-propelle	99.07
2ych_A	377	Competence protein PILM; cell cycle, type IV pilus	99.01
2fxu_A	375	Alpha-actin-1, actin, alpha skeletal muscle; actin	98.98
4a2a_A	419	Cell division protein FTSA, putative; cell cycle,	98.77
2zgy_A	320	Plasmid segregation protein PARM; plasmid partitio	98.56
3js6_A	355	Uncharacterized PARM protein; partition, segregati	98.51
1k8k_B	394	ARP2, actin-like protein 2; beta-propeller, struct	98.33
3dwl_A	427	Actin-related protein 3; propellor, actin-binding,	97.81
3qb0_A	498	Actin-related protein 4; actin fold, ATP binding,	97.65
4am6_A	655	Actin-like protein ARP8; nuclear protein, chromati	97.59
4apw_A	329	ALP12; actin-like protein; 19.70A {Clostridium tet	97.45
4fo0_A	593	Actin-related protein 8; chromatin remodeling, nuc	97.19
4ehu_A	276	Activator of 2-hydroxyisocaproyl-COA dehydratase;	97.11
1t6c_A	315	Exopolyphosphatase; alpha/beta protein, actin-like	96.4
2d0o_A	610	DIOL dehydratase-reactivating factor large subunit	96.37
1nbw_A	607	Glycerol dehydratase reactivase alpha subunit; mol	96.17
3mdq_A	315	Exopolyphosphatase; structural genomics, joint cen	95.77
3cer_A	343	Possible exopolyphosphatase-like protein; NESG, BL	94.99
1u6z_A	513	Exopolyphosphatase; alpha/beta protein, askha (ace	94.46
3hi0_A	508	Putative exopolyphosphatase; 17739545, structural	94.44
3cj1_A	456	Ectonucleoside triphosphate diphosphohydrolase 2;	89.44
3aap_A	353	Ectonucleoside triphosphate diphosphohydrolase I;	86.24
3zx3_A	452	Ectonucleoside triphosphate diphosphohydrolase 1;	86.17
3r8e_A	321	Hypothetical sugar kinase; ribonuclease H-like mot	81.44
2qm1_A	326	Glucokinase; alpha-beta structure, putative helix-	80.4

>4b9q_A Chaperone protein DNAK; HET: ATP; 2.40A {Escherichia coli} PDB: 2kho_A 1dkg_D

Probab=99.92  E-value=1.8e-25  Score=212.36  Aligned_cols=147  Identities=41%  Similarity=0.550  Sum_probs=122.4

Q ss_pred             ccceehhhh------HHhhhcccCcccchhhHhhhhhcCCCC-----------Cccc----------ceecceeeccccC
Q psy471            4 LLTIVSLED------VKLRQNQPCQATDNNIGYLARSFEGPE-----------WDYG----------HVRLRKSFSPRCC   56 (211)
Q Consensus         4 ~~~~~s~~~------~~~a~~~~~~~p~n~~~~l~r~~~g~~-----------~~~~----------~~~~~k~~speel   56 (211)
                      +.|+++|..      ...|.++...+|.|.+..++|.++.+.           +++.          ....++.|+|++|
T Consensus        36 ~PS~V~~~~~~~~~vG~~A~~~~~~~p~~ti~~~KrllG~~~~d~~v~~~~~~~p~~~~~~~~g~~~~~~~~~~~~p~ei  115 (605)
T 4b9q_A           36 TPSIIAYTQDGCTLVGQPAKRQAVTNPQNTLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAADNGDAWVEVKGQKMAPPQI  115 (605)
T ss_dssp             EECCEEECTTSCEEESHHHHHTTTTCGGGEECCGGGTTTCBTTSHHHHHHHTTCSSEEEECTTSBEEEEETTEEECHHHH
T ss_pred             cceEEEEeCCCcEEecHHHHHHHHhCCCcEehhhHHhhCCCCCCHHHHHHhhcCCeEEEEcCCCceEEEECCEEECHHHH
Confidence            445666642      234666677788888877777664331           1211          2235789999999


Q ss_pred             CCchHHHHHHHHHHHHHHHhhccccceeeEccCCCccHHHHHHHHHHHHHhCCceeEEeechhHHHHHcccccCCCCCce
Q psy471           57 HHSPRLFQLLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERN  136 (211)
Q Consensus        57 ~~~~~~a~iL~~L~~~a~~~~g~~~~~vVItVPa~f~~~qR~al~~Aa~~aGl~~~~lv~EP~AAAl~y~~~~~~~~~~~  136 (211)
                           ++++|++|++.|..++|.++..+|||||++|++.||+++++||..||+++++||+||+|||++|++.+. ..+.+
T Consensus       116 -----~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qr~a~~~Aa~~AGl~v~~li~EP~AAAlaygl~~~-~~~~~  189 (605)
T 4b9q_A          116 -----SAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAYGLDKG-TGNRT  189 (605)
T ss_dssp             -----HHHHHHHHHHHHHHHHTSCCCEEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEEEHHHHHHHHHHTTSC-CSSEE
T ss_pred             -----HHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHHHHcCCceEEEeCcHHHHHHHhhhhcc-CCCCE
Confidence                 999999999999999999999999999999999999999999999999999999999999999998875 35789


Q ss_pred             EEEeecCCCceEEEEEeccc
Q psy471          137 VKLPKMLEPLLVLTLRKKKK  156 (211)
Q Consensus       137 vLV~D~GggT~Dvsv~~~~~  156 (211)
                      +|||||||||||+|++++.+
T Consensus       190 vlV~DlGGGT~Dvsi~~~~~  209 (605)
T 4b9q_A          190 IAVYDLGGGAFDISIIEIDE  209 (605)
T ss_dssp             EEEEEECSSCEEEEEEEEEE
T ss_pred             EEEEECCCCeEEEEEEEEec
Confidence            99999999999999999865

>1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus} SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A*

Probab=99.92  E-value=6.5e-25  Score=206.50  Aligned_cols=135  Identities=49%  Similarity=0.639  Sum_probs=114.2

Q ss_pred             hhhcccCcccchhhHhhhhhcCCCCC------------cccce-------------ecceeeccccCCCchHHHHHHHHH
Q psy471           15 LRQNQPCQATDNNIGYLARSFEGPEW------------DYGHV-------------RLRKSFSPRCCHHSPRLFQLLTKM   69 (211)
Q Consensus        15 ~a~~~~~~~p~n~~~~l~r~~~g~~~------------~~~~~-------------~~~k~~speel~~~~~~a~iL~~L   69 (211)
                      .|.++...+|.|.+..++|.++ +.+            ++...             ...+.|+|++|     ++++|++|
T Consensus        54 ~A~~~~~~~p~~ti~~~KrllG-~~~~d~~v~~~~~~~p~~v~~~~g~~~~~v~~~~~~~~~sp~ei-----~a~~L~~l  127 (554)
T 1yuw_A           54 AAKNQVAMNPTNTVFDAKRLIG-RRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEV-----SSMVLTKM  127 (554)
T ss_dssp             HHHTTTTTCGGGEECCGGGTTT-CCSSCSHHHHHHTTCSSEEEEETTEEEEEEEETTEEEEECHHHH-----HHHHHHHH
T ss_pred             HHHHhhhhChhhehHhhHHhcC-CCCCcHHHHHHhhcCCeEEEecCCceEEEEEECCCceEEcHHHH-----HHHHHHHH
Confidence            3455556678888777777664 322            22221             12478999999     99999999


Q ss_pred             HHHHHHhhccccceeeEccCCCccHHHHHHHHHHHHHhCCceeEEeechhHHHHHcccccCCCCCceEEEeecCCCceEE
Q psy471           70 KETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVKLPKMLEPLLVL  149 (211)
Q Consensus        70 ~~~a~~~~g~~~~~vVItVPa~f~~~qR~al~~Aa~~aGl~~~~lv~EP~AAAl~y~~~~~~~~~~~vLV~D~GggT~Dv  149 (211)
                      +..|..++|.++..+|||||++|++.||+++++|+..||+++++|++||+|||++|++.+....+.++||||+||||||+
T Consensus       128 k~~ae~~lg~~v~~~VitVPa~f~~~qr~a~~~A~~~AGl~~~~li~EP~AAAlay~~~~~~~~~~~vlV~D~GgGT~Dv  207 (554)
T 1yuw_A          128 KEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYGLDKKVGAERNVLIFDLGGGTFDV  207 (554)
T ss_dssp             HHHHHHHHSSCCCEEEEEECTTCCHHHHHHHHHHHHTTTCEEEEEEEHHHHHHHHTTCSTTCSSCEEEEEEEECSSCEEE
T ss_pred             HHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHHHHcCCCeEEEeCcHHHHHHHHHhhccCCCCcEEEEEEcCCCeEEE
Confidence            99999999999999999999999999999999999999999999999999999999987754457899999999999999


Q ss_pred             EEEecc
Q psy471          150 TLRKKK  155 (211)
Q Consensus       150 sv~~~~  155 (211)
                      ||+++.
T Consensus       208 sv~~~~  213 (554)
T 1yuw_A          208 SILTIA  213 (554)
T ss_dssp             EEEEEE
T ss_pred             EEEEEc
Confidence            999975

>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli}

Probab=99.91  E-value=1.3e-24  Score=206.36  Aligned_cols=134  Identities=44%  Similarity=0.632  Sum_probs=115.1

Q ss_pred             hhcccCcccchhhHhhhhhcCCCCC------------cccce----------ecceeeccccCCCchHHHHHHHHHHHHH
Q psy471           16 RQNQPCQATDNNIGYLARSFEGPEW------------DYGHV----------RLRKSFSPRCCHHSPRLFQLLTKMKETA   73 (211)
Q Consensus        16 a~~~~~~~p~n~~~~l~r~~~g~~~------------~~~~~----------~~~k~~speel~~~~~~a~iL~~L~~~a   73 (211)
                      |.++...+|.|.+..++|.++ +.+            ++...          ..++.|+|++|     ++++|++|+..|
T Consensus        54 A~~~~~~~p~~t~~~~Kr~iG-~~~~d~~v~~~~~~~p~~~~~~~~g~~~i~~~g~~~~~~ei-----~a~~L~~l~~~a  127 (605)
T 2kho_A           54 AKRQAVTNPQNTLFAIKRLIG-RRFQDEEVQRDVSIMPFKIIAADNGDAWVEVKGQKMAPPQI-----SAEVLKKMKKTA  127 (605)
T ss_dssp             HHTTTTTCGGGEEECGGGTTT-CBSSSTTHHHHHHHCSSCEEECTTSBEEEEETTEEECHHHH-----HHHHHHHHHHHH
T ss_pred             HHHHhhhCCCCEeehhhHhhC-CCCCcHHHHHHhhcCCeEEEECCCCceEEEECCEEEcHHHH-----HHHHHHHHHHHH
Confidence            566667788888777777764 322            22211          14678999999     999999999999


Q ss_pred             HHhhccccceeeEccCCCccHHHHHHHHHHHHHhCCceeEEeechhHHHHHcccccCCCCCceEEEeecCCCceEEEEEe
Q psy471           74 EAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVKLPKMLEPLLVLTLRK  153 (211)
Q Consensus        74 ~~~~g~~~~~vVItVPa~f~~~qR~al~~Aa~~aGl~~~~lv~EP~AAAl~y~~~~~~~~~~~vLV~D~GggT~Dvsv~~  153 (211)
                      +.+++.++..+|||||++|++.||+++++|+..||+++++|++||+|||++|++.+. ..+.++|||||||||||+||++
T Consensus       128 e~~l~~~v~~~VitVPa~f~d~qr~a~~~A~~~AGl~v~~li~EP~AAAlay~l~~~-~~~~~vlV~DlGGGT~Dvsi~~  206 (605)
T 2kho_A          128 EDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAYGLDKG-TGNRTIAVYDLGGGTFDISIIE  206 (605)
T ss_dssp             HHHHCSCCCEEEEEECTTCCHHHHHHHHHHHHTTTCEEEEEEEHHHHHHHHTTTTSS-SSEEEEEEEEECSSCEEEEEEE
T ss_pred             HHHhCCCCcEEEEEECCCCCHHHHHHHHHHHHHcCCceEEEecCHHHHHHHhhhccc-CCCCEEEEEECCCCeEEEEEEE
Confidence            999999999999999999999999999999999999999999999999999998764 2578999999999999999999


Q ss_pred             ccc
Q psy471          154 KKK  156 (211)
Q Consensus       154 ~~~  156 (211)
                      +..
T Consensus       207 ~~~  209 (605)
T 2kho_A          207 IDE  209 (605)
T ss_dssp             EEC
T ss_pred             EEe
Confidence            863

>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, ATP-binding, Ca binding, chaperone, nucleotide-binding, phosphoprotein; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A*

Probab=99.90  E-value=7.5e-24  Score=203.72  Aligned_cols=103  Identities=31%  Similarity=0.416  Sum_probs=95.9

Q ss_pred             eeeccccCCCchHHHHHHHHHHHHHHHhhccccceeeEccCCCccHHHHHHHHHHHHHhCCceeEEeechhHHHHHcccc
Q psy471           49 KSFSPRCCHHSPRLFQLLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLD  128 (211)
Q Consensus        49 k~~speel~~~~~~a~iL~~L~~~a~~~~g~~~~~vVItVPa~f~~~qR~al~~Aa~~aGl~~~~lv~EP~AAAl~y~~~  128 (211)
                      +.|+|++|     ++++|++|+..|..++|.++..+|||||++|++.||+++++|+..||+++++|++||+|||++|++.
T Consensus       111 ~~~speei-----~a~~L~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~Aa~~AGl~~~~li~EP~AAAlaygl~  185 (675)
T 3d2f_A          111 HVFSATQL-----AAMFIDKVKDTVKQDTKANITDVCIAVPPWYTEEQRYNIADAARIAGLNPVRIVNDVTAAGVSYGIF  185 (675)
T ss_dssp             EEEEHHHH-----HHHHHHHHHHHHHHHHCSCCCEEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEEEHHHHHHHHHHHH
T ss_pred             ceEcHHHH-----HHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHHHHHcCCceEEEEcchHHHHHHHhhh
Confidence            67999999     9999999999999999999999999999999999999999999999999999999999999999986


Q ss_pred             cCC-----CCCceEEEeecCCCceEEEEEeccc
Q psy471          129 KNL-----KGERNVKLPKMLEPLLVLTLRKKKK  156 (211)
Q Consensus       129 ~~~-----~~~~~vLV~D~GggT~Dvsv~~~~~  156 (211)
                      +..     ..+.++|||||||||||+||+++.+
T Consensus       186 ~~~~~~~~~~~~~vlV~DlGGGT~Dvsv~~~~~  218 (675)
T 3d2f_A          186 KTDLPEGEEKPRIVAFVDIGHSSYTCSIMAFKK  218 (675)
T ss_dssp             CSCCCCSSSCCEEEEEEEECSSCEEEEEEEEET
T ss_pred             ccccccccCCCcEEEEEEcCCCcEEEEEEEecC
Confidence            531     3578999999999999999999753

>3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex, ATP-binding, chaperone, nucleotide-BIND phosphoprotein, stress response; HET: ADP; 1.30A {Homo sapiens} PDB: 4fsv_A* 1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A* 1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A* 3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* ...

Probab=99.90  E-value=9e-24  Score=189.43  Aligned_cols=103  Identities=58%  Similarity=0.787  Sum_probs=97.1

Q ss_pred             eeeccccCCCchHHHHHHHHHHHHHHHhhccccceeeEccCCCccHHHHHHHHHHHHHhCCceeEEeechhHHHHHcccc
Q psy471           49 KSFSPRCCHHSPRLFQLLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLD  128 (211)
Q Consensus        49 k~~speel~~~~~~a~iL~~L~~~a~~~~g~~~~~vVItVPa~f~~~qR~al~~Aa~~aGl~~~~lv~EP~AAAl~y~~~  128 (211)
                      +.|+|++|     ++++|++|++.+..+++.++..+|||||++|++.||+++++|+..||++++++++||+|||++|++.
T Consensus       131 ~~~~~~ei-----~a~~L~~l~~~a~~~~~~~~~~~vitvPa~~~~~~r~~~~~a~~~AGl~~~~li~Ep~AAa~~~~~~  205 (404)
T 3i33_A          131 KTFFPEEI-----SSMVLTKMKEIAEAYLGGKVHSAVITVPAYFNDSQRQATKDAGTITGLNVLRIINEPTAAAIAYGLD  205 (404)
T ss_dssp             EEECHHHH-----HHHHHHHHHHHHHHHHSSCCCEEEEEECTTCCHHHHHHHHHHHHHHTCEEEEEEEHHHHHHHHTTTT
T ss_pred             eEEcHHHH-----HHHHHHHHHHHHHHHhccCCCcEEEEECCCCCHHHHHHHHHHHHHcCCCeEEEeccHHHHHHHHHhh
Confidence            78999999     9999999999999999999999999999999999999999999999999999999999999999987


Q ss_pred             cCCC--CCceEEEeecCCCceEEEEEeccc
Q psy471          129 KNLK--GERNVKLPKMLEPLLVLTLRKKKK  156 (211)
Q Consensus       129 ~~~~--~~~~vLV~D~GggT~Dvsv~~~~~  156 (211)
                      ....  .+.++||||+||||+|++++++.+
T Consensus       206 ~~~~~~~~~~vlV~D~GgGT~dvsv~~~~~  235 (404)
T 3i33_A          206 KKGCAGGEKNVLIFDLGGGTFDVSILTIED  235 (404)
T ss_dssp             SSCSSSSCCEEEEEEECSSCEEEEEEEEET
T ss_pred             cccccCCCceEEEEECCCCcEEEEEEEEeC
Confidence            7643  678999999999999999998764

>2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus HTA426}

Probab=99.90  E-value=1.4e-23  Score=195.23  Aligned_cols=129  Identities=44%  Similarity=0.607  Sum_probs=111.2

Q ss_pred             hhcccCcccchhhHhhhhhcCCCCCcccceecceeeccccCCCchHHHHHHHHHHHHHHHhhccccceeeEccCCCccHH
Q psy471           16 RQNQPCQATDNNIGYLARSFEGPEWDYGHVRLRKSFSPRCCHHSPRLFQLLTKMKETAEAYLGHSVRDAVITVPAYFNDA   95 (211)
Q Consensus        16 a~~~~~~~p~n~~~~l~r~~~g~~~~~~~~~~~k~~speel~~~~~~a~iL~~L~~~a~~~~g~~~~~vVItVPa~f~~~   95 (211)
                      +.++...+| +.+..++|.+ |+.+.  ....++.|+|++|     ++++|++|+..|+.+++.++..+|||||++|++.
T Consensus        53 A~~~~~~~p-~~~~~~Kr~l-g~p~~--~~~~g~~~~~~ei-----~a~~L~~l~~~ae~~l~~~~~~~VitvPa~~~~~  123 (509)
T 2v7y_A           53 AKRQAITNP-NTIISIKRHM-GTDYK--VEIEGKQYTPQEI-----SAIILQYLKSYAEDYLGEPVTRAVITVPAYFNDA  123 (509)
T ss_dssp             HHTTTTTCS-SEEECGGGTT-TSCCC--EEETTEEECHHHH-----HHHHHHHHHHHHHHHHTSCCCEEEEEECTTCCHH
T ss_pred             HHHhHHhCC-CcHHHHHHhc-CCCcE--EEECCEEEcHHHH-----HHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHH
Confidence            444445567 6666676666 54332  2235678999999     9999999999999999989999999999999999


Q ss_pred             HHHHHHHHHHHhCCceeEEeechhHHHHHcccccCCCCCceEEEeecCCCceEEEEEecc
Q psy471           96 QRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVKLPKMLEPLLVLTLRKKK  155 (211)
Q Consensus        96 qR~al~~Aa~~aGl~~~~lv~EP~AAAl~y~~~~~~~~~~~vLV~D~GggT~Dvsv~~~~  155 (211)
                      ||+++++|+..||++++++++||+|||++|++.+.  .+.++||||+||||||+|++++.
T Consensus       124 qr~a~~~a~~~AGl~~~~li~Ep~AAAlay~~~~~--~~~~vlV~D~GgGT~Dvsv~~~~  181 (509)
T 2v7y_A          124 QRQATKDAGRIAGLEVERIINEPTAAALAYGLDKE--EDQTILVYDLGGGTFDVSILELG  181 (509)
T ss_dssp             HHHHHHHHHHHTTCEEEEEEEHHHHHHHHTTGGGS--CSEEEEEEEECSSCEEEEEEEEE
T ss_pred             HHHHHHHHHHHcCCCeEEEecCHHHHHHHHhhccC--CCCEEEEEECCCCeEEEEEEEEc
Confidence            99999999999999999999999999999998765  67899999999999999999874

>4gni_A Putative heat shock protein; HSP70-type ATPase, ATP binding protein, magnesium binding, C translational chaperone; HET: ATP; 1.80A {Chaetomium thermophilum var}

Probab=99.89  E-value=1.7e-23  Score=188.38  Aligned_cols=104  Identities=26%  Similarity=0.388  Sum_probs=94.6

Q ss_pred             ceeeccccCCCchHHHHHHHHHHHHHHHhhccccceeeEccCCCccHHHHHHHHHHHHHhCCceeEEeechhHHHHHccc
Q psy471           48 RKSFSPRCCHHSPRLFQLLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGL  127 (211)
Q Consensus        48 ~k~~speel~~~~~~a~iL~~L~~~a~~~~g~~~~~vVItVPa~f~~~qR~al~~Aa~~aGl~~~~lv~EP~AAAl~y~~  127 (211)
                      .+.++|++|     ++++|++|++.|..+++.++..+|||||++|++.||+++++|+..||++++++++||+|||++|++
T Consensus       122 ~~~~~~~ev-----~~~~L~~l~~~a~~~~~~~~~~~vitvPa~~~~~~r~~~~~a~~~AGl~~~~li~Ep~AAa~~~~~  196 (409)
T 4gni_A          122 PSTLTVSEI-----ATRYLRRLVGAASEYLGKKVTSAVITIPTNFTEKQKAALIAAAAAADLEVLQLISEPAAAVLAYDA  196 (409)
T ss_dssp             CEEEEHHHH-----HHHHHHHHHHHHHHHHTSCCCEEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEEEHHHHHHHHTTC
T ss_pred             ceEEcHHHH-----HHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHHHHcCCCeEEEEcCHHHHHHHHhc
Confidence            468999999     999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             cc-CCCCCceEEEeecCCCceEEEEEeccc
Q psy471          128 DK-NLKGERNVKLPKMLEPLLVLTLRKKKK  156 (211)
Q Consensus       128 ~~-~~~~~~~vLV~D~GggT~Dvsv~~~~~  156 (211)
                      .. ....+.++|||||||||||+|++++.+
T Consensus       197 ~~~~~~~~~~vlv~D~GgGT~dvsv~~~~~  226 (409)
T 4gni_A          197 RPEATISDKIIVVADLGGSRSDVTVLASRS  226 (409)
T ss_dssp             ------CCEEEEEEEECSSCEEEEEEEEET
T ss_pred             ccccCCCCCEEEEEECCCCceEEEEEEEeC
Confidence            75 234788999999999999999998764

>1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1

Probab=99.86  E-value=6.8e-22  Score=176.01  Aligned_cols=135  Identities=44%  Similarity=0.591  Sum_probs=112.4

Q ss_pred             hhcccCcccchhhHhhhhhcCCCC-----------Ccccc----------eecceeeccccCCCchHHHHHHHHHHHHHH
Q psy471           16 RQNQPCQATDNNIGYLARSFEGPE-----------WDYGH----------VRLRKSFSPRCCHHSPRLFQLLTKMKETAE   74 (211)
Q Consensus        16 a~~~~~~~p~n~~~~l~r~~~g~~-----------~~~~~----------~~~~k~~speel~~~~~~a~iL~~L~~~a~   74 (211)
                      +.+....+|.+.+..++|.++.+.           +++..          ...++.++|++|     ++++|++|++.|+
T Consensus        54 A~~~~~~~~~~~~~~~k~~lg~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~~i-----~~~~L~~l~~~a~  128 (383)
T 1dkg_D           54 AKRQAVTNPQNTLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAADNGDAWVEVKGQKMAPPQI-----SAEVLKKMKKTAE  128 (383)
T ss_dssp             HHTTSTTCGGGEEECGGGTTTCBSCSHHHHHHTTTCSSEEEECSSSBEEEEETTEEECHHHH-----HHHHHHHHHHHHH
T ss_pred             HHHhhhhCccceeehhHHhhCCCCCcHHHHHHhhcCCeEEEEcCCCcEEEEECCEEEcHHHH-----HHHHHHHHHHHHH
Confidence            455566678887777777764221           22221          114568999999     9999999999999


Q ss_pred             HhhccccceeeEccCCCccHHHHHHHHHHHHHhCCceeEEeechhHHHHHcccccCCCCCceEEEeecCCCceEEEEEec
Q psy471           75 AYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVKLPKMLEPLLVLTLRKK  154 (211)
Q Consensus        75 ~~~g~~~~~vVItVPa~f~~~qR~al~~Aa~~aGl~~~~lv~EP~AAAl~y~~~~~~~~~~~vLV~D~GggT~Dvsv~~~  154 (211)
                      .+++.++..+|||||++|++.||+++++|+..||++++++++||+|||++|++... ..+.++||||+||||||++++++
T Consensus       129 ~~~~~~~~~~vitvP~~~~~~~r~~~~~a~~~aGl~~~~li~Ep~Aaa~~~~~~~~-~~~~~~lVvD~Gggttdvsv~~~  207 (383)
T 1dkg_D          129 DYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAYGLDKG-TGNRTIAVYDLGGGTFDISIIEI  207 (383)
T ss_dssp             HHHSSCCCEEEECBCTTCCHHHHHHHHHHHHHTTCEESCCCBHHHHHHHHHTCCC--CCEEEEEEEEECSSCEEEEEEEE
T ss_pred             HHhCCCCCeEEEEECCCCCHHHHHHHHHHHHHcCCceEEEeccHHHHHHHHHhccC-CCCcEEEEEEcCCCeEEEEEEEE
Confidence            99998889999999999999999999999999999999999999999999988653 35679999999999999999997


Q ss_pred             cc
Q psy471          155 KK  156 (211)
Q Consensus       155 ~~  156 (211)
                      ..
T Consensus       208 ~~  209 (383)
T 1dkg_D          208 DE  209 (383)
T ss_dssp             EC
T ss_pred             Ee
Confidence            63

>1jce_A ROD shape-determining protein MREB; MBL, actin, HSP-70, FTSZ, structural protein; 2.10A {Thermotoga maritima} SCOP: c.55.1.1 c.55.1.1 PDB: 1jcf_A 1jcg_A* 2wus_A

Probab=99.67  E-value=3.2e-16  Score=137.61  Aligned_cols=91  Identities=23%  Similarity=0.230  Sum_probs=76.3

Q ss_pred             HHHHHHHHHHHHHH--hhccccceeeEccCCCccHHHHHHHHHHHHHhCCceeEEeechhHHHHHcccccCCCCCceEEE
Q psy471           62 LFQLLTKMKETAEA--YLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVKL  139 (211)
Q Consensus        62 ~a~iL~~L~~~a~~--~~g~~~~~vVItVPa~f~~~qR~al~~Aa~~aGl~~~~lv~EP~AAAl~y~~~~~~~~~~~vLV  139 (211)
                      ...+++++...+..  .++  ...+|||||++|+..||+++++|++.+|+++++++++|+|||++|++...  .+.++||
T Consensus        76 ~~~i~~~~l~~~~~~~~~~--~~~~vitvP~~~~~~~r~~~~~a~~~aG~~~~~li~ep~Aaa~~~~~~~~--~~~~~lV  151 (344)
T 1jce_A           76 ALVMLRYFINKAKGGMNLF--KPRVVIGVPIGITDVERRAILDAGLEAGASKVFLIEEPMAAAIGSNLNVE--EPSGNMV  151 (344)
T ss_dssp             HHHHHHHHHHHHHTSCCSC--CCEEEEEECTTCCHHHHHHHHHHHHHTTCSEEEEEEHHHHHHHHTTCCTT--SSSCEEE
T ss_pred             HHHHHHHHHHHHhhccccC--CCeEEEEECCCCCHHHHHHHHHHHHHcCCCeEeccCCHHHHHHhcCCCCC--CCceEEE
Confidence            45555555555443  233  47899999999999999999999999999999999999999999987654  6788999


Q ss_pred             eecCCCceEEEEEeccc
Q psy471          140 PKMLEPLLVLTLRKKKK  156 (211)
Q Consensus       140 ~D~GggT~Dvsv~~~~~  156 (211)
                      ||+||||||+++++...
T Consensus       152 vDiGggttdvsv~~~~~  168 (344)
T 1jce_A          152 VDIGGGTTEVAVISLGS  168 (344)
T ss_dssp             EEECSSCEEEEEEETTE
T ss_pred             EEeCCCeEEEEEEEcCC
Confidence            99999999999998643

>2fsj_A Hypothetical protein TA0583; actin homologs, archaea, ATPase, MREB, PARM, structural PROT; 1.90A {Thermoplasma acidophilum} SCOP: c.55.1.12 c.55.1.12 PDB: 2fsk_A 2fsn_A*

Probab=99.47  E-value=4.6e-14  Score=125.26  Aligned_cols=102  Identities=14%  Similarity=0.050  Sum_probs=77.1

Q ss_pred             ceeeccccCCCchHHHHHHHHHHHHHHHhhccccceee--EccCCCccHHHHHHHHHHHHHh--------C------Cce
Q psy471           48 RKSFSPRCCHHSPRLFQLLTKMKETAEAYLGHSVRDAV--ITVPAYFNDAQRQATKDAGAIA--------G------LNV  111 (211)
Q Consensus        48 ~k~~speel~~~~~~a~iL~~L~~~a~~~~g~~~~~vV--ItVPa~f~~~qR~al~~Aa~~a--------G------l~~  111 (211)
                      +..+++...     .++++..|++.+....+.+ .++|  |+||++|+..||+++++++..+        |      +..
T Consensus        92 ~~~~~~~~~-----~~ll~~~l~~~~~~~~~~~-~~vvL~i~vP~~~~~~er~a~~~~~~~~~~~v~~~~G~~~~i~v~~  165 (346)
T 2fsj_A           92 DGRLASKEA-----FPLIAAALWESGIHNDGSP-VDLVIGSGTPLGTFDLEVKAAKEALENKVLTVTGPEGEVRQFNITR  165 (346)
T ss_dssp             TTCTTSTTT-----HHHHHHHHHHHCCCC---C-EEEEEEEEECGGGHHHHHHHHHHHHTTEEEEEECGGGCEEEEEEEE
T ss_pred             CCcccChhH-----HHHHHHHHHHhhhccCCCc-eEEEEcccCCHHHHHHHHHHHHHHHcCCCcEEEeCCCceEEEEEEE
Confidence            445677777     8888888877652233333 5699  9999999999999999998765        4      356


Q ss_pred             eEEeechhHHHHHcccccC-C-CCCceEEEeecCCCceEEEEEeccc
Q psy471          112 MRIVNEPTAAALAYGLDKN-L-KGERNVKLPKMLEPLLVLTLRKKKK  156 (211)
Q Consensus       112 ~~lv~EP~AAAl~y~~~~~-~-~~~~~vLV~D~GggT~Dvsv~~~~~  156 (211)
                      +++++||+|||++| +... . ....+++|+|+||||||++|+++.+
T Consensus       166 v~li~Ep~AAa~~~-l~~~~~~~~~~~vlVvDIGgGTtDv~vi~~~~  211 (346)
T 2fsj_A          166 LIMRPQGVGAALYL-LNQGIIEQQPGYGVVIDVGSRTTDVLTINLMD  211 (346)
T ss_dssp             EEEEETTHHHHHHH-HHHTSSCCCSSEEEEEEECSSCEEEEEEETTT
T ss_pred             EEEEccHHHHHHHh-hccccccccCCcEEEEECCCCcEEEEEEEecC
Confidence            88999999999998 3321 1 1347899999999999999999643

>3h1q_A Ethanolamine utilization protein EUTJ; ethanolamine utilization EUTJ, structural genomics, PSI-2; HET: ATP; 2.80A {Carboxydothermus hydrogenoformans z-29organism_taxid}

Probab=99.26  E-value=1.9e-11  Score=103.44  Aligned_cols=86  Identities=24%  Similarity=0.310  Sum_probs=76.3

Q ss_pred             HHHHHHHHHHHHHHhhccccceeeEccCCCccHHHHHHHHHHHHHhCCceeEEeechhHHHHHcccccCCCCCceEEEee
Q psy471           62 LFQLLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVKLPK  141 (211)
Q Consensus        62 ~a~iL~~L~~~a~~~~g~~~~~vVItVPa~f~~~qR~al~~Aa~~aGl~~~~lv~EP~AAAl~y~~~~~~~~~~~vLV~D  141 (211)
                      +..+|++++..+....+.....+++++|++|+..+|++++.++..+|+++..++.+|.|++++|+..       ..+|+|
T Consensus        73 ~~~~l~~~~~~~~~~~~~~~~~~v~tvp~~~~~~~~~~~~~~~~~~g~~~~~i~~e~~A~a~~~~~~-------~~~viD  145 (272)
T 3h1q_A           73 AIQIVRELKAKVERLLGSELFQAATAIPPGTVGRNAEACGHVVAGAGLELVTLVDEPVAAARALGIN-------DGIVVD  145 (272)
T ss_dssp             HHHHHHHHHHHHHHHSSSCCCEEEEECCSCC---CTTHHHHHHHHTTCEEEEEECHHHHHHHHHTCS-------SEEEEE
T ss_pred             HHHHHHHHHHHHHHhcCCccCeEEEEcCCCCCHHHHHHHHHHHHHcCCeeeecccHHHHHHHHHcCC-------CEEEEE
Confidence            7889999999999888888889999999999999999999999999999999999999999998763       259999


Q ss_pred             cCCCceEEEEEec
Q psy471          142 MLEPLLVLTLRKK  154 (211)
Q Consensus       142 ~GggT~Dvsv~~~  154 (211)
                      +||||+++++++.
T Consensus       146 iGggst~~~~~~~  158 (272)
T 3h1q_A          146 IGGGTTGIAVIEK  158 (272)
T ss_dssp             ECSSCEEEEEEET
T ss_pred             ECCCcEEEEEEEC
Confidence            9999999999863

>1k8k_A ARP3, actin-like protein 3, actin-2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 c.55.1.1 PDB: 1tyq_A* 1u2v_A* 2p9i_A* 2p9k_A* 2p9l_A 2p9n_A* 2p9p_A* 2p9s_A* 2p9u_A* 3dxk_A* 3dxm_A* 3rse_A

Probab=99.07  E-value=6.7e-10  Score=99.99  Aligned_cols=73  Identities=10%  Similarity=-0.050  Sum_probs=60.6

Q ss_pred             cceeeEccCCCccHHHHHHHHHHH-HHhCCceeEEeechhHHHHH-cccccCCCCCceEEEeecCCCceEEEEEe
Q psy471           81 VRDAVITVPAYFNDAQRQATKDAG-AIAGLNVMRIVNEPTAAALA-YGLDKNLKGERNVKLPKMLEPLLVLTLRK  153 (211)
Q Consensus        81 ~~~vVItVPa~f~~~qR~al~~Aa-~~aGl~~~~lv~EP~AAAl~-y~~~~~~~~~~~vLV~D~GggT~Dvsv~~  153 (211)
                      ...+|||+|++|+..+|+++.+++ ..+|++.+.++++|+|||++ |..........+.||+|+|+|||+++++.
T Consensus       107 ~~~vvit~p~~~~~~~r~~~~e~~fe~~g~~~~~l~~ep~aa~~a~~~~~~~~~~~~~glVvDiG~gtt~v~~v~  181 (418)
T 1k8k_A          107 DHYFLLTEPPLNTPENREYTAEIMFESFNVPGLYIAVQAVLALAASWTSRQVGERTLTGTVIDSGDGVTHVIPVA  181 (418)
T ss_dssp             GCCEEEEECTTCCHHHHHHHHHHHHHTSCCSEEEEEEHHHHHHHHGGGSTTCCSCCCCEEEEEESSSCEEEEEEE
T ss_pred             CCcEEEEeCCCCCHHHHHHHHHHHHHhcCCCEEEEechHHHHhhhhhcccccCCCCCeEEEEEcCCCceEEEEeE
Confidence            357999999999999999999999 88999999999999999988 52211111222779999999999999985

>2ych_A Competence protein PILM; cell cycle, type IV pilus actin secretion; HET: ATP; 2.20A {Thermus thermophilus}

Probab=99.01  E-value=3.4e-10  Score=100.13  Aligned_cols=83  Identities=16%  Similarity=0.098  Sum_probs=67.2

Q ss_pred             HHHHHHhhccccceeeEccCCCccHHH--------------------HHHHHHHHHHhCCceeEEeechhHHHHHccccc
Q psy471           70 KETAEAYLGHSVRDAVITVPAYFNDAQ--------------------RQATKDAGAIAGLNVMRIVNEPTAAALAYGLDK  129 (211)
Q Consensus        70 ~~~a~~~~g~~~~~vVItVPa~f~~~q--------------------R~al~~Aa~~aGl~~~~lv~EP~AAAl~y~~~~  129 (211)
                      +..+.++++.++..++|.+|.  .+.+                    .+.+++|++.||+++.+++.+|+|||++|++..
T Consensus       108 ~~ea~~~~~~~~~~~vid~~~--~~~~~~~~~~~~~~v~~va~~~~~v~~~~~~~~~aGl~~~~i~~ep~Aaa~~~~~~~  185 (377)
T 2ych_A          108 RWEAERYIPFPIDEVVLDFAP--LTPLSEVQEGEQVQVMVAAARQEAVAGVLEALRGAGLVPVVLDVKPFAGLYPLEARL  185 (377)
T ss_dssp             HHHHGGGCSSCC-CEEEEEEE--SSCGGGSCTTSEEEEEEEEEEHHHHHHHHHHHHHTTCEEEEEEEHHHHTTGGGHHHH
T ss_pred             HHHHhhcCCCChhHceEEEEE--eCCCCCCCCcceeEEEEEEecHHHHHHHHHHHHHCCCceEEEecchHHHHHHHHhhc
Confidence            346777888888999998873  3332                    388999999999999999999999999997654


Q ss_pred             CCCCCceEEEeecCCCceEEEEEec
Q psy471          130 NLKGERNVKLPKMLEPLLVLTLRKK  154 (211)
Q Consensus       130 ~~~~~~~vLV~D~GggT~Dvsv~~~  154 (211)
                      .......++|+|+||||||+++++.
T Consensus       186 ~~~~~~~~~vvDiGggttdi~i~~~  210 (377)
T 2ych_A          186 AEEPDRVFLVLDIGAESTSLVLLRG  210 (377)
T ss_dssp             HTSTTCEEEEEEECSSCEEEEEEET
T ss_pred             ccccCCeEEEEEECCCcEEEEEEEC
Confidence            3335678999999999999999874

>2fxu_A Alpha-actin-1, actin, alpha skeletal muscle; actin complexed to bistramide A, structural protein; HET: HIC ATP BID; 1.35A {Oryctolagus cuniculus} SCOP: c.55.1.1 c.55.1.1 PDB: 1h1v_A* 1kxp_A* 1lot_B* 1m8q_7* 1ma9_B* 1mvw_1* 1nwk_A* 1o18_1* 1o19_1* 1o1a_1* 1o1b_0* 1o1c_0* 1o1d_0* 1o1e_1* 1o1f_0* 1o1g_1* 1j6z_A* 1qz6_A* 1rdw_X* 1rfq_A* ...

Probab=98.98  E-value=2e-09  Score=95.86  Aligned_cols=82  Identities=9%  Similarity=-0.056  Sum_probs=65.6

Q ss_pred             HHHHHHHHHHHHHHhhccc--cceeeEccCCCccHHHHHHHHHH-HHHhCCceeEEeechhHHHHHcccccCCCCCceEE
Q psy471           62 LFQLLTKMKETAEAYLGHS--VRDAVITVPAYFNDAQRQATKDA-GAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVK  138 (211)
Q Consensus        62 ~a~iL~~L~~~a~~~~g~~--~~~vVItVPa~f~~~qR~al~~A-a~~aGl~~~~lv~EP~AAAl~y~~~~~~~~~~~vL  138 (211)
                      ...+++++..   +.++..  ...++||+|++++..+|+++.++ ...+|++.+.++++|+|||++++.       .+.|
T Consensus        82 ~e~i~~~~~~---~~L~~~~~~~~vvit~p~~~~~~~r~~~~e~~fe~~g~~~~~~~~e~~aaa~a~g~-------~~~l  151 (375)
T 2fxu_A           82 MEKIWHHTFY---NELRVAPEEHPTLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGR-------TTGI  151 (375)
T ss_dssp             HHHHHHHHHH---TTSCCCGGGSCEEEEECTTCCHHHHHHHHHHHHHTTCCSEEEEEEHHHHHHHHTTC-------SSEE
T ss_pred             HHHHHHHHHH---HhcCCCCcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCcceEEEccchheeeeecCC-------CeEE
Confidence            4445555542   334433  24699999999999999988876 478899999999999999999985       3689


Q ss_pred             EeecCCCceEEEEEe
Q psy471          139 LPKMLEPLLVLTLRK  153 (211)
Q Consensus       139 V~D~GggT~Dvsv~~  153 (211)
                      |+|+|+|||+++.+.
T Consensus       152 VvDiG~gtt~v~~v~  166 (375)
T 2fxu_A          152 VLDSGDGVTHNVPIY  166 (375)
T ss_dssp             EEEECSSCEEEEEEE
T ss_pred             EEEcCCCceEEeEeE
Confidence            999999999998874

>4a2a_A Cell division protein FTSA, putative; cell cycle, actin, divisome; HET: ATP; 1.80A {Thermotoga maritima} PDB: 1e4g_T* 1e4f_T* 4a2b_A*

Probab=98.77  E-value=1.7e-08  Score=91.89  Aligned_cols=91  Identities=13%  Similarity=0.061  Sum_probs=75.1

Q ss_pred             HHHHHHHHHHHHHHhhccccce-eeEccCCC------------ccH----------------------------------
Q psy471           62 LFQLLTKMKETAEAYLGHSVRD-AVITVPAY------------FND----------------------------------   94 (211)
Q Consensus        62 ~a~iL~~L~~~a~~~~g~~~~~-vVItVPa~------------f~~----------------------------------   94 (211)
                      ++..++++++.|+..+|.++.+ +++++|..            ++.                                  
T Consensus        56 ~~~~I~~av~~ae~~~g~~i~~~v~v~i~g~~~~i~s~~~~~~i~~~~~~i~~~di~~~i~~a~~~~~p~d~~~l~~~p~  135 (419)
T 4a2a_A           56 FKESVNTLLKELEEQLQKSLRSDFVISFSSVSFEREDTVIERDFGEEKRSITLDILSEMQSEALEKLKENGKTPLHIFSK  135 (419)
T ss_dssp             HHHHHHHHHHHHHHHHTSCCCSEEEEEECCTTCEEEEEEEEEECCSSCEECCHHHHHHHHHHHHHHHSCTTEEEEEEEEE
T ss_pred             HHHHHHHHHHHHHHHcCCCcCceEEEEEcCCcCeEEEEEeEEEEeCCCCEECHHHHHHHHHHhhhhcCCCCCEEEEEEee
Confidence            6778888888888889999999 99999988            210                                  


Q ss_pred             --------------------------------HHHHHHHHHHHHhCCceeEEeechhHHHHHcccccCCCCCceEEEeec
Q psy471           95 --------------------------------AQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVKLPKM  142 (211)
Q Consensus        95 --------------------------------~qR~al~~Aa~~aGl~~~~lv~EP~AAAl~y~~~~~~~~~~~vLV~D~  142 (211)
                                                      ...+.+.+|+..||+++.+++.+|+|||++|.....  ....++|+|+
T Consensus       136 ~f~vDg~~~i~~P~Gm~g~~l~~~v~~v~~~~~~v~n~~~~~~~AGL~v~~lv~ep~Aaa~a~l~~~~--~~~gv~vvDi  213 (419)
T 4a2a_A          136 RYLLDDERIVFNPLDMKASKIAIEYTSIVVPLKVYEMFYNFLQDTVKSPFQLKSSLVSTAEGVLTTPE--KDRGVVVVNL  213 (419)
T ss_dssp             EEEETTTEEESCCTTCEESEEEEEEEEEEEEHHHHHHHHHHHHTTSCSCEEEEEHHHHHHHHHCCHHH--HHHCEEEEEE
T ss_pred             EEEECCccCcCCCCCCcccEEEEEEEEEEEeHHHHHHHHHHHHHcCCcEEEEEEHHHHHHHHhhcccc--ccCCEEEEEE
Confidence                                            122468899999999999999999999998864432  4567999999


Q ss_pred             CCCceEEEEEec
Q psy471          143 LEPLLVLTLRKK  154 (211)
Q Consensus       143 GggT~Dvsv~~~  154 (211)
                      ||||||++|++-
T Consensus       214 Gggttdisi~~~  225 (419)
T 4a2a_A          214 GYNFTGLIAYKN  225 (419)
T ss_dssp             CSSSEEEEEEET
T ss_pred             CCCcEEEEEEEC
Confidence            999999999873

>2zgy_A Plasmid segregation protein PARM; plasmid partition, structural protein; HET: GDP; 1.90A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 PDB: 1mwk_A* 2qu4_A 1mwm_A* 2zgz_A* 2zhc_A* 3iku_A 3iky_A

Probab=98.56  E-value=9.5e-09  Score=89.48  Aligned_cols=71  Identities=14%  Similarity=0.137  Sum_probs=51.9

Q ss_pred             ceeeEccCCC-ccHH--HH--HHHHHH------------HHHhCCceeEEeechhHHHHHcccccCCCCCceEEEeecCC
Q psy471           82 RDAVITVPAY-FNDA--QR--QATKDA------------GAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVKLPKMLE  144 (211)
Q Consensus        82 ~~vVItVPa~-f~~~--qR--~al~~A------------a~~aGl~~~~lv~EP~AAAl~y~~~~~~~~~~~vLV~D~Gg  144 (211)
                      ..+|+++|.. |...  ||  .++.+.            ++.+++..+.++++|.||+++|....  .....++|+|+||
T Consensus        96 ~~lv~glP~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~e~~aa~~~~~~~~--~~~~~~~vvDiGg  173 (320)
T 2zgy_A           96 VDIVCTLPLTEYYDRNNQPNTENIERKKANFRKKITLNGGDTFTIKDVKVMPESIPAGYEVLQEL--DELDSLLIIDLGG  173 (320)
T ss_dssp             EEEEEEECHHHHBCTTSSBCHHHHHHHHHHTTSCEEETTBCCCEEEEEEEEESSHHHHHHHHHHS--CTTCEEEEEEECS
T ss_pred             EEEEEcCCHHHHccCCCcccHHHHHHHHHhhcCcEecCCCcEEEEEEEEEecCcHHHHHhhhccc--cCCCCEEEEEcCC
Confidence            3699999987 6541  22  222221            23455678889999999999886432  2567999999999


Q ss_pred             CceEEEEEec
Q psy471          145 PLLVLTLRKK  154 (211)
Q Consensus       145 gT~Dvsv~~~  154 (211)
                      ||+|+++++-
T Consensus       174 gttd~~v~~~  183 (320)
T 2zgy_A          174 TTLDISQVMG  183 (320)
T ss_dssp             SCEEEEEEEG
T ss_pred             CeEEEEEEeC
Confidence            9999999973

>3js6_A Uncharacterized PARM protein; partition, segregation, filament, unknown function; 1.95A {Staphylococcus aureus}

Probab=98.51  E-value=1.4e-07  Score=83.90  Aligned_cols=72  Identities=10%  Similarity=0.083  Sum_probs=58.9

Q ss_pred             ceeeEccCCCccHHHH-HHHHHHHHHhCC------------ceeEEeechhHHHHHcccccCCC----CCceEEEeecCC
Q psy471           82 RDAVITVPAYFNDAQR-QATKDAGAIAGL------------NVMRIVNEPTAAALAYGLDKNLK----GERNVKLPKMLE  144 (211)
Q Consensus        82 ~~vVItVPa~f~~~qR-~al~~Aa~~aGl------------~~~~lv~EP~AAAl~y~~~~~~~----~~~~vLV~D~Gg  144 (211)
                      ..+++++|..+...+| .++++++...+.            ..+.++++|.||++++.+.....    .+..+||+|+||
T Consensus       114 ~~lvvGLP~~~~~~~k~~~l~~~l~~~~~v~~~g~~~~i~I~~V~v~pE~~~a~~~~~~~~~~~~~~~~~~~~~vvDiGg  193 (355)
T 3js6_A          114 VVIATGMPSNEIGTDKQAKFEKLLNKSRLIEIDGIAKTINVKGVKIVAQPMGTLLDLNMENGKVFKAFTEGKYSVLDFGS  193 (355)
T ss_dssp             EEEEEEECGGGTTSHHHHHHHHHHSSCEEEEETTEEEEEEEEEEEEEEHHHHHHHHTTEETTEECHHHHTCEEEEEEECS
T ss_pred             EEEEEeCCHHHHhHHHHHHHHHHhCCCeEEEECCEEEEEEEEEEEEEeCcHHHHHHHHHccCccccccccCcEEEEEeCC
Confidence            4799999999988887 588888875543            46778999999999998765211    478899999999


Q ss_pred             CceEEEEEe
Q psy471          145 PLLVLTLRK  153 (211)
Q Consensus       145 gT~Dvsv~~  153 (211)
                      ||||++++.
T Consensus       194 gTtd~~v~~  202 (355)
T 3js6_A          194 GTTIIDTYQ  202 (355)
T ss_dssp             SCEEEEEEE
T ss_pred             CcEEEEEEc
Confidence            999999984

>1k8k_B ARP2, actin-like protein 2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 PDB: 1tyq_B* 1u2v_B* 2p9i_B* 2p9l_B 2p9n_B* 2p9p_B* 2p9s_B* 2p9u_B* 3dxk_B* 3dxm_B* 3rse_B 2p9k_B*

Probab=98.33  E-value=1.1e-07  Score=85.27  Aligned_cols=65  Identities=9%  Similarity=0.006  Sum_probs=15.1

Q ss_pred             ceeeEccCCCccHHHHHHHHHHH-HHhCCceeEEeechhHHHHHcccccCCCCCceEEEeecCCCceEEEEEe
Q psy471           82 RDAVITVPAYFNDAQRQATKDAG-AIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVKLPKMLEPLLVLTLRK  153 (211)
Q Consensus        82 ~~vVItVPa~f~~~qR~al~~Aa-~~aGl~~~~lv~EP~AAAl~y~~~~~~~~~~~vLV~D~GggT~Dvsv~~  153 (211)
                      ..++||+|++++..+|+++.+++ ..+|++.+.++++|+|||++++.       .+.||+|+|+|+|+++.+.
T Consensus       105 ~~vllt~p~~~~~~~r~~~~e~~fe~~~~~~~~~~~~~~~a~~a~g~-------~~~lVVDiG~g~T~v~pv~  170 (394)
T 1k8k_B          105 CKILLTEPPMNPTKNREKIVEVMFETYQFSGVYVAIQAVLTLYAQGL-------LTGVVVDSGDGVTHICPVY  170 (394)
T ss_dssp             --------------------------------------------------------CCEEEECSSCEEEECEE
T ss_pred             CcEEEEECCCCCHHHHHHHHHHhhhccCCCeEEEEhhHHHHHHhCCC-------ceEEEEEcCCCceEeeeeE
Confidence            45999999999999999888865 77899999999999999999875       3569999999999998764

>3dwl_A Actin-related protein 3; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=97.81  E-value=0.00011  Score=66.76  Aligned_cols=71  Identities=10%  Similarity=-0.034  Sum_probs=60.6

Q ss_pred             ceeeEccCCCccHHHHHHHHHHH-HHhCCceeEEeechhHHHHHcccccCCCC-CceEEEeecCCCceEEEEE
Q psy471           82 RDAVITVPAYFNDAQRQATKDAG-AIAGLNVMRIVNEPTAAALAYGLDKNLKG-ERNVKLPKMLEPLLVLTLR  152 (211)
Q Consensus        82 ~~vVItVPa~f~~~qR~al~~Aa-~~aGl~~~~lv~EP~AAAl~y~~~~~~~~-~~~vLV~D~GggT~Dvsv~  152 (211)
                      ..++||.|+..+..+|+.+.+.+ ...|++.+.++.+|.+|+++.+....... ..+-||+|+|+|+|+++.+
T Consensus       124 ~pvlltep~~~~~~~re~~~ei~FE~~~~p~v~l~~~~vla~~a~G~~~~~~~~~~tglVVDiG~g~T~v~PV  196 (427)
T 3dwl_A          124 HYFLLTEPPLNPPENRENTAEIMFESFNCAGLYIAVQAVLALAASWTSSKVTDRSLTGTVVDSGDGVTHIIPV  196 (427)
T ss_dssp             CEEEEEECTTCCHHHHHHHHHHHTTTTCCSEEEEEEHHHHHHHGGGGSTTTCSCCCCEEEEEESSSCEEEEEE
T ss_pred             CcEEEEcCCCCCHHHHHHHHHHHHHhccCceeeecchHHHHHHhcCCcccccCCCceEEEEECCCCceEEEEE
Confidence            47999999999999999998887 78999999999999999998886432111 4578999999999999986

>3qb0_A Actin-related protein 4; actin fold, ATP binding, nucleus, structural protein; HET: ATP; 3.40A {Saccharomyces cerevisiae}

Probab=97.65  E-value=0.00012  Score=68.21  Aligned_cols=82  Identities=11%  Similarity=0.028  Sum_probs=63.9

Q ss_pred             HHHHHHHHHHHHHHhhccc--cc-eeeEccCCCccHHHHHHHHHHH-HHhCCceeEEeechhHHHHHcccccCCCCCceE
Q psy471           62 LFQLLTKMKETAEAYLGHS--VR-DAVITVPAYFNDAQRQATKDAG-AIAGLNVMRIVNEPTAAALAYGLDKNLKGERNV  137 (211)
Q Consensus        62 ~a~iL~~L~~~a~~~~g~~--~~-~vVItVPa~f~~~qR~al~~Aa-~~aGl~~~~lv~EP~AAAl~y~~~~~~~~~~~v  137 (211)
                      ...+++++...   .++..  -. .++||.|+..+...|+.+.+++ ...|++.+.++.+|.+||+++|..       +-
T Consensus        95 ~E~iw~~~f~~---~L~v~p~~~~pvlltep~~n~~~~Re~~~eilFE~f~vpav~l~~~~vlalya~G~~-------tg  164 (498)
T 3qb0_A           95 AQEQWQWALQN---ELYLNSNSGIPALLTEPVWNSTENRKKSLEVLLEGMQFEACYLAPTSTCVSFAAGRP-------NC  164 (498)
T ss_dssp             HHHHHHHHHHH---TSCCSCCTTCCEEEEECTTCCHHHHHHHHHHHHTTSCCSEEEEEEHHHHHHHHHTCS-------SE
T ss_pred             HHHHHHHHHHh---hhCCCcccCCceEEEeCCCCcHHHHHHHHHHHHhhcCCCeEeecchHHHHHHHcCCC-------eE
Confidence            45555555432   33322  23 6899999999999999888864 789999999999999999988752       34


Q ss_pred             EEeecCCCceEEEEEe
Q psy471          138 KLPKMLEPLLVLTLRK  153 (211)
Q Consensus       138 LV~D~GggT~Dvsv~~  153 (211)
                      ||+|+|+|+|+++.+.
T Consensus       165 lVVDiG~g~T~vvPI~  180 (498)
T 3qb0_A          165 LVVDIGHDTCSVSPIV  180 (498)
T ss_dssp             EEEEECSSCEEEEEEE
T ss_pred             EEEEcCCCcEEEEEEe
Confidence            9999999999999874

>4am6_A Actin-like protein ARP8; nuclear protein, chromatin remodelling complex, ATP-binding nuclear actin-related protein; 2.70A {Saccharomyces cerevisiae} PDB: 4am7_A*

Probab=97.59  E-value=0.00026  Score=67.72  Aligned_cols=66  Identities=11%  Similarity=0.151  Sum_probs=58.1

Q ss_pred             ceeeEccCCCccHHHHHHHHHHH-HHhCCceeEEeechhHHHHHcccccCCCCCceEEEeecCCCceEEEEEe
Q psy471           82 RDAVITVPAYFNDAQRQATKDAG-AIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVKLPKMLEPLLVLTLRK  153 (211)
Q Consensus        82 ~~vVItVPa~f~~~qR~al~~Aa-~~aGl~~~~lv~EP~AAAl~y~~~~~~~~~~~vLV~D~GggT~Dvsv~~  153 (211)
                      ..++||.|+.++...|+.+.+++ ...|++.+.++.+|.+|++++|+      ..+-||+|+|+|+|+++.+.
T Consensus       222 ~pVLLTEPplnp~~~REkm~EIlFE~fgvpavyl~~qavlAlyasGl------~ttGLVVDiG~g~T~VvPV~  288 (655)
T 4am6_A          222 YKVVLVIPDIFKKSHVETFIRVLLTELQFQAVAIIQESLATCYGAGI------STSTCVVNIGAAETRIACVD  288 (655)
T ss_dssp             CEEEEEECTTCCHHHHHHHHHHHHHTSCCSEEEEEEHHHHHHHHSCC------SSCEEEEEECSSCEEEEEEE
T ss_pred             CcEEEEeCCCCCHHHHHHHHHHHHhhcCCCeeeeccHHHHHHHhCCC------CCceEEEcCCCceEEEEEEe
Confidence            46999999999999999988887 57899999999999999998875      24579999999999999874

>4apw_A ALP12; actin-like protein; 19.70A {Clostridium tetani}

Probab=97.45  E-value=0.00011  Score=64.27  Aligned_cols=70  Identities=11%  Similarity=0.057  Sum_probs=52.1

Q ss_pred             ceeeEccCCCccH--HHHHHHHHHHHHh--------C------CceeEEeechhHHHHHcccccCCCCCceEEEeecCCC
Q psy471           82 RDAVITVPAYFND--AQRQATKDAGAIA--------G------LNVMRIVNEPTAAALAYGLDKNLKGERNVKLPKMLEP  145 (211)
Q Consensus        82 ~~vVItVPa~f~~--~qR~al~~Aa~~a--------G------l~~~~lv~EP~AAAl~y~~~~~~~~~~~vLV~D~Ggg  145 (211)
                      -.+++++|..+..  .+|+.+++.....        |      +..+.++++|.+|++.+.   .......++|+|+|||
T Consensus       106 v~lv~gLP~~~~~~~~~k~~~~~~l~~~~~v~~~~~g~~~~i~I~~v~v~pe~~ga~~~~~---~~~~~~~v~vvDiGgg  182 (329)
T 4apw_A          106 VQLVLACPLSVLRNAKAKEEYRDYIKGNGEITVKVDDKEYSFEITDITIKAEGSGVLFLEQ---ENFKNKNVAVIDFGGL  182 (329)
T ss_dssp             EEEEEEECGGGTTSSTTTTHHHHHHSSCEEECSSTTCCCEEEEEEEEEEEEHHHHHHHHSC---CCCTTCEEEEEEECSS
T ss_pred             EEEEEcCCHHHhcchhHHHHHHHHhcCCceEEEEECCEEEEEEEeEEEEEeccHHHHhhcc---hhhccCCEEEEEeCCC
Confidence            4789999998764  3677777776521        2      234678899998887652   1225688999999999


Q ss_pred             ceEEEEEec
Q psy471          146 LLVLTLRKK  154 (211)
Q Consensus       146 T~Dvsv~~~  154 (211)
                      |||+++++.
T Consensus       183 Ttd~~v~~~  191 (329)
T 4apw_A          183 NMGFSLYRN  191 (329)
T ss_dssp             CEEEEEEET
T ss_pred             cEEEEEEEC
Confidence            999999984

>4fo0_A Actin-related protein 8; chromatin remodeling, nucleosomes, NU gene regulation; HET: ATP; 2.60A {Homo sapiens}

Probab=97.19  E-value=0.0013  Score=61.34  Aligned_cols=64  Identities=11%  Similarity=0.167  Sum_probs=55.2

Q ss_pred             ceeeEccCCCccHHHHHHHHHH-HHHhCCceeEEeechhHHHHHcccccCCCCCceEEEeecCCCceEEEEE
Q psy471           82 RDAVITVPAYFNDAQRQATKDA-GAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVKLPKMLEPLLVLTLR  152 (211)
Q Consensus        82 ~~vVItVPa~f~~~qR~al~~A-a~~aGl~~~~lv~EP~AAAl~y~~~~~~~~~~~vLV~D~GggT~Dvsv~  152 (211)
                      ..++||.|..++...|+.+.+. ....|+..+.++.++.+|++++|..       +-||+|+|.+.|.|+-+
T Consensus       199 ~pvlltep~~~~~~~re~~~eilFE~f~~pa~~~~~~~vla~ya~G~~-------tglVVDiG~~~T~v~PV  263 (593)
T 4fo0_A          199 YRCILLIPDIYNKQHVKELVNMILMKMGFSGIVVHQESVCATYGSGLS-------STCIVDVGDQKTSVCCV  263 (593)
T ss_dssp             CEEEEEECSSCCHHHHHHHHHHHHHTTCCSEEEEEEHHHHHHHHHTCS-------EEEEEEECSSCEEEEEE
T ss_pred             CcEEEEeCCCCCHHHHHHHHHHHHHhcCCCeEEeechHHHHHHHCCCC-------ceEEEEeCCCceeeeee
Confidence            3599999999999998877766 4677999999999999999988754       56999999999998865

>4ehu_A Activator of 2-hydroxyisocaproyl-COA dehydratase; actin fold, ATPase, electron transfer, ATP/ADP binding; HET: ANP; 1.60A {Clostridium difficile} PDB: 4eht_A* 4eia_A

Probab=97.11  E-value=9e-05  Score=62.57  Aligned_cols=81  Identities=6%  Similarity=-0.112  Sum_probs=55.2

Q ss_pred             eccccCCCchHHHHHHHHHHHHHHHhhccccceeeEccCCCccHHHHHHHHHHHHHhCCceeEEeechhHHHHHcccccC
Q psy471           51 FSPRCCHHSPRLFQLLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKN  130 (211)
Q Consensus        51 ~speel~~~~~~a~iL~~L~~~a~~~~g~~~~~vVItVPa~f~~~qR~al~~Aa~~aGl~~~~lv~EP~AAAl~y~~~~~  130 (211)
                      ..|.++     ++.+|++++..+..........++-..|               ..++..+.+.|++|+|+++++.+...
T Consensus        33 g~~~e~-----a~~vl~~~~~~a~~~~~~~~~~a~t~~~---------------~~a~~~~~~~Vne~~aha~a~~~~~~   92 (276)
T 4ehu_A           33 GTGTTG-----PSRVLEKLYGKTGLAREDIKKVVVTGYG---------------RMNYSDADKQISELSCHARGVNFIIP   92 (276)
T ss_dssp             CTTSSH-----HHHHHHHHHHHHCCCGGGEEEEEEESTT---------------GGGCCSCSEECCHHHHHHHHHHHHST
T ss_pred             CCCHHH-----HHHHHHHHHHHCCCcchhccccccCchH---------------HHHhhCCCcccchHHHHHHHHHHhCC
Confidence            466778     8889988887764332211111222222               23566788899999999988876544


Q ss_pred             CCCCceEEEeecCCCceEEEEEecc
Q psy471          131 LKGERNVKLPKMLEPLLVLTLRKKK  155 (211)
Q Consensus       131 ~~~~~~vLV~D~GggT~Dvsv~~~~  155 (211)
                          ....|+|+|||+++++++..+
T Consensus        93 ----~~~~vl~lgG~~~~~~~~~~~  113 (276)
T 4ehu_A           93 ----ETRTIIDIGGQDAKVLKLDNN  113 (276)
T ss_dssp             ----TCCEEEEECSSCEEEEEECTT
T ss_pred             ----CCCeEEEEcCCCceEEEEEec
Confidence                345789999999999988543

>1t6c_A Exopolyphosphatase; alpha/beta protein, actin-like fold, hydrolase; 1.53A {Aquifex aeolicus} SCOP: c.55.1.8 c.55.1.8 PDB: 1t6d_A 2j4r_A*

Probab=96.40  E-value=0.006  Score=53.23  Aligned_cols=59  Identities=17%  Similarity=0.032  Sum_probs=38.6

Q ss_pred             HHHHHHHHHHHHhCCceeEEeechhHHHHHcccccCCCCCceEEEeecCCCceEEEEEe
Q psy471           95 AQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVKLPKMLEPLLVLTLRK  153 (211)
Q Consensus        95 ~qR~al~~Aa~~aGl~~~~lv~EP~AAAl~y~~~~~~~~~~~vLV~D~GggT~Dvsv~~  153 (211)
                      ++..++..+-..+|+++--|=.+..|.....+.....+.....+|+|+|||||.+++.+
T Consensus        98 N~~~fl~~v~~~~G~~i~vIsg~eEA~l~~~gv~~~l~~~~~~lvvDIGGGStEl~~~~  156 (315)
T 1t6c_A           98 NAEEFLERVKREVGLVVEVITPEQEGRYAYLAVAYSLKPEGEVCVVDQGGGSTEYVFGK  156 (315)
T ss_dssp             THHHHHHHHHHHTCCCEEECCHHHHHHHHHHHHHHHTCCCSEEEEEEEETTEEEEEEEE
T ss_pred             CHHHHHHHHHHHHCCCEEEcCHHHHHHHHHHHHHhhcccCCCEEEEEeCCCcEEEEEEe
Confidence            34455556666789987644445555444444433322346799999999999999985

>2d0o_A DIOL dehydratase-reactivating factor large subunit; chaperone; HET: ADP; 2.00A {Klebsiella oxytoca} SCOP: c.8.6.1 c.55.1.6 c.55.1.6 PDB: 2d0p_A

Probab=96.37  E-value=0.005  Score=57.95  Aligned_cols=58  Identities=12%  Similarity=-0.017  Sum_probs=46.1

Q ss_pred             HHHHHHHHHHHHHh-CC--ceeEEeechhHHHHHcccccCCCCCceEEEeecCCCceEEEEEecc
Q psy471           94 DAQRQATKDAGAIA-GL--NVMRIVNEPTAAALAYGLDKNLKGERNVKLPKMLEPLLVLTLRKKK  155 (211)
Q Consensus        94 ~~qR~al~~Aa~~a-Gl--~~~~lv~EP~AAAl~y~~~~~~~~~~~vLV~D~GggT~Dvsv~~~~  155 (211)
                      ..+-+-+..|.+.+ |+  .+-.  -+|.||+++..-...  ....++++||||||||+||+.-.
T Consensus       367 ~~~m~NI~~cVer~~gL~veV~g--~ep~AAglaaLTeDE--~eLGvaiIDmGGGTTd~sVf~~G  427 (610)
T 2d0o_A          367 RLQMAMIAREIEQKLNIDVQIGG--AEAEAAILGALTTPG--TTRPLAILDLGAGSTDASIINPK  427 (610)
T ss_dssp             CCCHHHHHHHHHHHHCCEEEEEE--EHHHHHHHHHTTSTT--CCSSEEEEEECSSEEEEEEECTT
T ss_pred             HHHHHHHHHHHHhccCCcceecc--ccHHHhhhhhcCCCC--CcCCeEEEEeCCCcceEEEEcCC
Confidence            45566778888888 99  6666  888888887655444  77889999999999999998643

>1nbw_A Glycerol dehydratase reactivase alpha subunit; molecular chaperone, actin-like ATPase domain, beta/BETA/alpha swiveling domain, hydrolase; 2.40A {Klebsiella pneumoniae} SCOP: c.8.6.1 c.55.1.6 c.55.1.6

Probab=96.17  E-value=0.0046  Score=58.27  Aligned_cols=57  Identities=9%  Similarity=-0.134  Sum_probs=43.7

Q ss_pred             HHHHHHHHHHHHh-CC--ceeEEeechhHHHHHcccccCCCCCceEEEeecCCCceEEEEEecc
Q psy471           95 AQRQATKDAGAIA-GL--NVMRIVNEPTAAALAYGLDKNLKGERNVKLPKMLEPLLVLTLRKKK  155 (211)
Q Consensus        95 ~qR~al~~Aa~~a-Gl--~~~~lv~EP~AAAl~y~~~~~~~~~~~vLV~D~GggT~Dvsv~~~~  155 (211)
                      .+-+-+..|.+.+ |+  .+-.  -+|.||+++..-...  ....++++||||||||+||+.-.
T Consensus       370 ~~m~NI~~~Ver~~gL~veV~g--~ep~AA~laaLTedE--~elGvaiIDmGgGTTd~sVf~~g  429 (607)
T 1nbw_A          370 LQMQVIARELSARLQTEVVVGG--VEANMAIAGALTTPG--CAAPLAILDLGAGSTDAAIVNAE  429 (607)
T ss_dssp             CCSCCHHHHHHHHHTSEEEECS--CHHHHHHHHHTTSTT--CCSSEEEEEECSSEEEEEEECSS
T ss_pred             HHHHHHHHHHHhccCCcceecc--ccHHHhhhhhcCCCC--CcCCeEEEEeCCCcceEEEEcCC
Confidence            3445677777788 88  6665  788888877655444  77889999999999999998643

>3mdq_A Exopolyphosphatase; structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: MSE; 1.50A {Cytophaga hutchinsonii}

Probab=95.77  E-value=0.016  Score=50.34  Aligned_cols=58  Identities=7%  Similarity=0.132  Sum_probs=38.6

Q ss_pred             HHHHHHHHHHHHhCCceeEEeechhHHHHHc-ccccCCC-CCceEEEeecCCCceEEEEEe
Q psy471           95 AQRQATKDAGAIAGLNVMRIVNEPTAAALAY-GLDKNLK-GERNVKLPKMLEPLLVLTLRK  153 (211)
Q Consensus        95 ~qR~al~~Aa~~aGl~~~~lv~EP~AAAl~y-~~~~~~~-~~~~vLV~D~GggT~Dvsv~~  153 (211)
                      ++..++..+-...|+++- +|+-..=|.+.| +.....+ .....||+|+|||+|.+++++
T Consensus        90 N~~~fl~~i~~~tG~~i~-vIsG~eEA~l~~~gv~~~~~~~~~~~lviDIGGGStEl~~~~  149 (315)
T 3mdq_A           90 NKQVLIDRIKKEVNIDVE-VIDGAREAELIFRGVQQAVPMEDHISLAMDIGGGSVEFIIGN  149 (315)
T ss_dssp             THHHHHHHHHHHHCCCEE-ECCHHHHHHHHHHHHHHHSCCTTCCEEEEEECSSCEEEEEEC
T ss_pred             CHHHHHHHHHHHHCCCeE-EeCHHHHHHHHHHHHHhcCCCCCCCEEEEEeCCCceEEEEEE
Confidence            334466666677898765 666555454444 3333222 246799999999999999986

>3cer_A Possible exopolyphosphatase-like protein; NESG, BLR13, Q8G5J2, X-RAY, structure, structural genomics, PSI-2; 2.40A {Bifidobacterium longum NCC2705}

Probab=94.99  E-value=0.057  Score=47.54  Aligned_cols=58  Identities=10%  Similarity=0.114  Sum_probs=39.4

Q ss_pred             HHHHHHHHHHHhCCceeEEeechhHHHHHc-ccccCCC---CCceEEEeecCCCceEEEEEec
Q psy471           96 QRQATKDAGAIAGLNVMRIVNEPTAAALAY-GLDKNLK---GERNVKLPKMLEPLLVLTLRKK  154 (211)
Q Consensus        96 qR~al~~Aa~~aGl~~~~lv~EP~AAAl~y-~~~~~~~---~~~~vLV~D~GggT~Dvsv~~~  154 (211)
                      +..++..+-...|+++- +|+-..=|.+.| +......   ....++|+|+|||||+++++.-
T Consensus       104 ~~~fl~~v~~~tGi~ie-VIsG~eEA~l~~~gv~~~~~~~~~~~~~lviDIGGGStel~~~~~  165 (343)
T 3cer_A          104 REEFEDEIERILGVRPE-VIPGTEEADLSFLGATSVVNRDDLPAPYLVVDLGGGSTELVIGGD  165 (343)
T ss_dssp             HHHHHHHHHHHHSSCCE-ECCHHHHHHHHHHHHHSSCCTTTCCSSEEEEEECSSCEEEEECCC
T ss_pred             HHHHHHHHHHHHCCCEE-EeCHHHHHHHHHHHHHhhCccccccCCEEEEEeCCCceEEEEeec
Confidence            34466666677898755 777666666655 3322221   2356999999999999999853

>1u6z_A Exopolyphosphatase; alpha/beta protein, askha (acetate and sugar kinases, HSC70, superfamily; 1.90A {Escherichia coli} SCOP: a.211.1.5 c.55.1.8 c.55.1.8 PDB: 2flo_A*

Probab=94.46  E-value=0.061  Score=49.81  Aligned_cols=91  Identities=14%  Similarity=0.076  Sum_probs=51.3

Q ss_pred             HHHHHHHHHHHHHHhhccccceeeEccCC--CccHHHHHHHHHHHHHhCCceeEEeechhHHHHHc-ccccCCCCCceEE
Q psy471           62 LFQLLTKMKETAEAYLGHSVRDAVITVPA--YFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAY-GLDKNLKGERNVK  138 (211)
Q Consensus        62 ~a~iL~~L~~~a~~~~g~~~~~vVItVPa--~f~~~qR~al~~Aa~~aGl~~~~lv~EP~AAAl~y-~~~~~~~~~~~vL  138 (211)
                      ....+..|+..+......++..+.+-.-+  .--.+...++..+-...|+++- +|+-..=|.+.| |...........|
T Consensus        62 i~r~~~~L~~f~~~~~~~~v~~v~~vATsA~R~A~N~~~fl~~i~~~tG~~i~-vIsG~eEA~l~~~gv~~~~~~~~~~l  140 (513)
T 1u6z_A           62 MTRGLNCLSLFAERLQGFSPASVCIVGTHTLRQALNATDFLKRAEKVIPYPIE-IISGNEEARLIFMGVEHTQPEKGRKL  140 (513)
T ss_dssp             HHHHHHHHHHHHHHTTTCCGGGEEEEECHHHHHCTTHHHHHHHHTTTCSSCEE-ECCHHHHHHHHHHHHHHHSCCCSCEE
T ss_pred             HHHHHHHHHHHHHHHHhCCCCEEEEEecHHHHcCcCHHHHHHHHHHHHCCCEE-EeCHHHHHHHHHHHHHhhccCCCCEE
Confidence            34455555555544434445433221111  0112333456666667798765 777666666555 3333322223699


Q ss_pred             EeecCCCceEEEEEe
Q psy471          139 LPKMLEPLLVLTLRK  153 (211)
Q Consensus       139 V~D~GggT~Dvsv~~  153 (211)
                      |+|+|||+|.+++.+
T Consensus       141 viDIGGGStEl~~~~  155 (513)
T 1u6z_A          141 VIDIGGGSTELVIGE  155 (513)
T ss_dssp             EEEECSSCEEEEEEE
T ss_pred             EEEECCCcEEEEEEe
Confidence            999999999999874

>3hi0_A Putative exopolyphosphatase; 17739545, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 2.30A {Agrobacterium tumefaciens str}

Probab=94.44  E-value=0.069  Score=49.40  Aligned_cols=57  Identities=16%  Similarity=0.082  Sum_probs=38.4

Q ss_pred             HHHHHHHHHHHHhCCceeEEeechhHHHHHc-ccccCCCCCceEEEeecCCCceEEEEEe
Q psy471           95 AQRQATKDAGAIAGLNVMRIVNEPTAAALAY-GLDKNLKGERNVKLPKMLEPLLVLTLRK  153 (211)
Q Consensus        95 ~qR~al~~Aa~~aGl~~~~lv~EP~AAAl~y-~~~~~~~~~~~vLV~D~GggT~Dvsv~~  153 (211)
                      +...++..+-...|+++- +|+-..=|.+.| |.....+. ...||+|+|||+|.+++.+
T Consensus       101 N~~~fl~~i~~~tG~~ie-vIsG~EEA~l~~~gv~~~~~~-~~~lvvDIGGGStEl~~~~  158 (508)
T 3hi0_A          101 NGPDFIREAEAILGCEIE-VLSGEKEALYSAYGVISGFYQ-PDGIAGDLGGGSLELIDIK  158 (508)
T ss_dssp             THHHHHHHHHHHHTSCEE-ECCHHHHHHHHHHHHHHHSSS-CEEEEEEECSSCEEEEEEE
T ss_pred             CHHHHHHHHHHHHCCCeE-EecHHHHHHHHHHHHHhcCCC-CCeEEEEeCCCceEEEEee
Confidence            344566666677898765 777666555554 33332222 3459999999999999986

>3cj1_A Ectonucleoside triphosphate diphosphohydrolase 2; alpha/beta protein, actin-like fold, alternative splicing, calcium, glycoprotein, magnesium; 1.70A {Rattus norvegicus} PDB: 3cj7_A* 3cj9_A* 3cja_A*

Probab=89.44  E-value=0.55  Score=42.92  Aligned_cols=92  Identities=11%  Similarity=0.016  Sum_probs=50.4

Q ss_pred             HHHHHHHHHHHHHHhhc---cccceeeEccCCCccHH------HHHHHHH-HHHHh---CC--ceeEEeechhHHHHHc-
Q psy471           62 LFQLLTKMKETAEAYLG---HSVRDAVITVPAYFNDA------QRQATKD-AGAIA---GL--NVMRIVNEPTAAALAY-  125 (211)
Q Consensus        62 ~a~iL~~L~~~a~~~~g---~~~~~vVItVPa~f~~~------qR~al~~-Aa~~a---Gl--~~~~lv~EP~AAAl~y-  125 (211)
                      +...|..|++.|.....   .....+.+-.-+..-.+      ++..+.+ +....   |+  ..+++|+-..=|.++| 
T Consensus        87 ~~~~l~~Ll~~a~~~iP~~~~~~t~v~~~ATAgmR~a~~~~~~n~~~~L~~v~~~l~~~~f~~~~v~VIsG~eEa~y~wl  166 (456)
T 3cj1_A           87 AGQSLVRCLEQALRDVPRDRHASTPLYLGATAGMRLLNLTSPEATARVLEAVTQTLTQYPFDFRGARILSGQDEGVFGWV  166 (456)
T ss_dssp             HHHHTHHHHHHHHHHSCHHHHTTCEEEEEECHHHHHHHHHCHHHHHHHHHHHHHHHTTSSSEEEEEEECCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHcCCceEEEEeeHHHhhCccccHHHHHHHHHHHHHHHhhCCCCcCceEEcCchHHhhhhHH
Confidence            44566777777654421   12223333222222111      3334444 44444   44  4678999777766665 


Q ss_pred             ----ccccC----------CCCCceEEEeecCCCceEEEEEe
Q psy471          126 ----GLDKN----------LKGERNVKLPKMLEPLLVLTLRK  153 (211)
Q Consensus       126 ----~~~~~----------~~~~~~vLV~D~GggT~Dvsv~~  153 (211)
                          .+...          .+....++|+|||||++.++...
T Consensus       167 ~vn~~lg~~~~~~~~~~~~~~~~~t~gvlDlGGgStqi~~~~  208 (456)
T 3cj1_A          167 TANYLLENFIKYGWVGRWIRPRKGTLGAMDLGGASTQITFET  208 (456)
T ss_dssp             HHHHHTTTTSCCEETTEECSSCCCCCEEEEECSSEEEEEEEC
T ss_pred             HHHhhhcccccccccccccccCCCceEEEEcCCCceEEEecc
Confidence                23211          01246789999999999999874

>3aap_A Ectonucleoside triphosphate diphosphohydrolase I; adenosine triphosphatase, ntpdase; 1.60A {Legionella pneumophila} PDB: 3aaq_A* 3aar_A*

Probab=86.24  E-value=0.7  Score=40.73  Aligned_cols=57  Identities=11%  Similarity=0.062  Sum_probs=36.2

Q ss_pred             HHHHHHHHHHHh-------CCceeEEeechhHHHHHc-----ccccCC-CCCceEEEeecCCCceEEEEEe
Q psy471           96 QRQATKDAGAIA-------GLNVMRIVNEPTAAALAY-----GLDKNL-KGERNVKLPKMLEPLLVLTLRK  153 (211)
Q Consensus        96 qR~al~~Aa~~a-------Gl~~~~lv~EP~AAAl~y-----~~~~~~-~~~~~vLV~D~GggT~Dvsv~~  153 (211)
                      +...+..+....       |+ .+++|+-..=|.+.|     .+.... ...++++|+|+|||++.+++..
T Consensus        89 ~~~~l~~v~~~~~~~~~~~g~-~v~VIsG~eEa~~~~~gv~~~l~~~~~~~~~t~~v~DiGGGStei~~~~  158 (353)
T 3aap_A           89 QKKYYDELEYWFRQQSQWQLV-EAKTITGNDEALFDWLAVNYKLDTLKSVQNKSVGVMDMGGASVQIVFPM  158 (353)
T ss_dssp             HHHHHHHHHHHHHTCSSEEEE-EEEECCHHHHHHHHHHHHHHHTTCSSSCCSSCEEEEEECSSEEEEEEEC
T ss_pred             HHHHHHHHHHHHhhCCCCCCC-eEEECChHHHHHHHHHHHHHHhhhccccccccEEEEEeCCCceEEEEec
Confidence            444444444455       64 566888766666554     232211 1345799999999999999874

>3zx3_A Ectonucleoside triphosphate diphosphohydrolase 1; domain rotation, purinergic signaling; 1.70A {Rattus norvegicus} PDB: 3zx2_A* 3zx0_A*

Probab=86.17  E-value=1.3  Score=40.53  Aligned_cols=94  Identities=9%  Similarity=0.015  Sum_probs=53.8

Q ss_pred             HHHHHHHHHHHHHHhhc---cccceeeEccCCCccH------HHHHHHHHHH-HHh---CC--ceeEEeechhHHHHHc-
Q psy471           62 LFQLLTKMKETAEAYLG---HSVRDAVITVPAYFND------AQRQATKDAG-AIA---GL--NVMRIVNEPTAAALAY-  125 (211)
Q Consensus        62 ~a~iL~~L~~~a~~~~g---~~~~~vVItVPa~f~~------~qR~al~~Aa-~~a---Gl--~~~~lv~EP~AAAl~y-  125 (211)
                      ++..|+.|.+.|.....   .....+.+-..|..-.      .++..+.+++ ...   ++  ..+++|+-..=|.++| 
T Consensus        87 ~~~~l~~Ll~~a~~~vp~~~~~~tpi~~~ATAgmR~l~~~~~~~~~~il~~v~~~l~~~~f~~~~v~iisG~eEg~y~wi  166 (452)
T 3zx3_A           87 IAAYLAECMKMSTERIPASKQHQTPVYLGATAGMRLLRMESKQSADEVLAAVSRSLKSYPFDFQGAKIITGQEEGAYGWI  166 (452)
T ss_dssp             HHHHHHHHHHHHHHHSCHHHHTTCEEEEEECHHHHHHHHHCHHHHHHHHHHHHHHHHTSSSEEEEEEECCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHcCCccEEEEeeHHHhhccccCHHHHHHHHHHHHHHHhhCCCCCCceEECCchhhhhhhHH
Confidence            45678888888776533   1233444444443321      1334444443 333   44  3578898776666554 


Q ss_pred             ----ccccCCC-CCceEEEeecCCCceEEEEEecc
Q psy471          126 ----GLDKNLK-GERNVKLPKMLEPLLVLTLRKKK  155 (211)
Q Consensus       126 ----~~~~~~~-~~~~vLV~D~GggT~Dvsv~~~~  155 (211)
                          .+..-.. ...++.++|||||++.++...-.
T Consensus       167 ~vnyllg~l~~~~~~t~g~lDlGGgStQi~f~~~~  201 (452)
T 3zx3_A          167 TINYLLGRFKTPGGSTFGALDLGGASTQITFVPLN  201 (452)
T ss_dssp             HHHHHTTTTC---CCCCEEEEECSSEEEEEECCSS
T ss_pred             HHHhhhccccCCCCCceEEEecCCCceEEEeccCC
Confidence                3332111 34678899999999999977533

>3r8e_A Hypothetical sugar kinase; ribonuclease H-like motif, structural genomics, joint center structural genomics, JCSG; HET: MSE; 1.65A {Cytophaga hutchinsonii}

Probab=81.44  E-value=4.4  Score=34.35  Aligned_cols=87  Identities=11%  Similarity=-0.029  Sum_probs=49.3

Q ss_pred             HHHHHHHHHHHHHHhhccccceeeEccCCCccHHH-------------HHHHH-HHHHHh-CCceeEEeechhHHHHHcc
Q psy471           62 LFQLLTKMKETAEAYLGHSVRDAVITVPAYFNDAQ-------------RQATK-DAGAIA-GLNVMRIVNEPTAAALAYG  126 (211)
Q Consensus        62 ~a~iL~~L~~~a~~~~g~~~~~vVItVPa~f~~~q-------------R~al~-~Aa~~a-Gl~~~~lv~EP~AAAl~y~  126 (211)
                      +..+.+.+.+...  ...++..+.|++|...+...             ...++ ...+.. |++ +.+.|+..|||++-.
T Consensus        60 ~~~i~~~i~~~~~--~~~~i~gigi~~pG~vd~~~g~v~~~~~l~~w~~~~l~~~l~~~~~~~p-V~v~NDa~aaalaE~  136 (321)
T 3r8e_A           60 VESMKLEIGNFLK--QYPIVKGVGIGWPGLVSLDRTKVILLPNIPSVVNVPIVEILRSEFPHIH-FKIENDAKCAALGEY  136 (321)
T ss_dssp             HHHHHHHHHHHHH--HCTTCCEEEEEESSEECTTSCCEEEBTTBCCCCSCCHHHHHHHHCTTSE-EEEEEHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh--ccCCeeEEEEEecccEECCCCEEEeCCCCccccCCCHHHHHHHHcCCCC-EEEEchHHHHHHHHH
Confidence            5555444444332  23456667777776543110             01111 122345 765 559999999999865


Q ss_pred             cccCCCCCceEEEeecCCCceEEEEE
Q psy471          127 LDKNLKGERNVKLPKMLEPLLVLTLR  152 (211)
Q Consensus       127 ~~~~~~~~~~vLV~D~GggT~Dvsv~  152 (211)
                      +.......++++++-+|.| .-.+++
T Consensus       137 ~~g~~~~~~~~v~l~~GtG-iG~gii  161 (321)
T 3r8e_A          137 YFGENKRMQTFILLALGTG-VGSGVM  161 (321)
T ss_dssp             HHSTTTTCSSEEEEEESSS-EEEEEE
T ss_pred             HhCCCCCCCcEEEEEECCc-eEEEEE
Confidence            5433345677888888887 455554

>2qm1_A Glucokinase; alpha-beta structure, putative helix-turn-helix, structural PSI-2, protein structure initiative; HET: MSE; 2.02A {Enterococcus faecalis}

Probab=80.40  E-value=5.1  Score=33.54  Aligned_cols=86  Identities=9%  Similarity=0.114  Sum_probs=50.5

Q ss_pred             HHHHHHHHHHHHHHhh--ccccceeeEccCCCccH-----------------HHHHHHHHHHHHhCCceeEEeechhHHH
Q psy471           62 LFQLLTKMKETAEAYL--GHSVRDAVITVPAYFND-----------------AQRQATKDAGAIAGLNVMRIVNEPTAAA  122 (211)
Q Consensus        62 ~a~iL~~L~~~a~~~~--g~~~~~vVItVPa~f~~-----------------~qR~al~~Aa~~aGl~~~~lv~EP~AAA  122 (211)
                      ...+.+.+.+...+.-  ..++..+.|++|...+.                 .-++.+.   +..|++ +.+.|+..|||
T Consensus        47 ~~~l~~~i~~~~~~~~~~~~~i~~igi~~pG~vd~~~g~v~~~~~l~w~~~~~l~~~l~---~~~~~p-v~v~ND~~aaa  122 (326)
T 2qm1_A           47 VPSIIESIRHRIDLYNMKKEDFVGIGMGTPGSVDIEKGTVVGAYNLNWTTVQPVKEQIE---SALGIP-FALDNDANVAA  122 (326)
T ss_dssp             HHHHHHHHHHHHHHTTCCGGGEEEEEEEESSEEETTTTEEECBGGGTBCSCBCHHHHHH---HHHCSC-EEEEEHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCCccceeEEEEecccceeCCCCEEEecCCCCccCCchHHHHHH---HHhCCC-EEEecHHHHHH
Confidence            5555555555443321  13456777888875422                 1123333   335776 56999999999


Q ss_pred             HHcccccCCCCCceEEEeecCCCceEEEEE
Q psy471          123 LAYGLDKNLKGERNVKLPKMLEPLLVLTLR  152 (211)
Q Consensus       123 l~y~~~~~~~~~~~vLV~D~GggT~Dvsv~  152 (211)
                      ++-.+.......++++++-+|.| +-.+++
T Consensus       123 ~~e~~~g~~~~~~~~~~l~~GtG-iG~giv  151 (326)
T 2qm1_A          123 LGERWKGAGENNPDVIFITLGTG-VGGGIV  151 (326)
T ss_dssp             HHHHHHSTTTTCSCEEEEEESSS-EEEEEE
T ss_pred             HHHHHhCCCCCCCcEEEEEECCc-eEEEEE
Confidence            88544333234567888888888 455555

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	211
d1dkgd1	183	c.55.1.1 (D:3-185) Heat shock protein 70kDa, ATPas	8e-35
d1bupa1	185	c.55.1.1 (A:4-188) Heat shock protein 70kDa, ATPas	1e-30
d1jcea1	137	c.55.1.1 (A:4-140) Prokaryotic actin homolog MreB	2e-20

>d1dkgd1 c.55.1.1 (D:3-185) Heat shock protein 70kDa, ATPase fragment {Escherichia coli, gene dnaK [TaxId: 562]} Length = 183

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Heat shock protein 70kDa, ATPase fragment
species: Escherichia coli, gene dnaK [TaxId: 562]

 Score =  119 bits (300), Expect = 8e-35
 Identities = 53/66 (80%), Positives = 57/66 (86%)

Query: 65  LLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALA 124
           +L KMK+TAE YLG  V +AVITVPAYFNDAQRQATKDAG IAGL V RI+NEPTAAALA
Sbjct: 117 VLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALA 176

Query: 125 YGLDKN 130
           YGLDK 
Sbjct: 177 YGLDKG 182

>d1bupa1 c.55.1.1 (A:4-188) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]} Length = 185

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Heat shock protein 70kDa, ATPase fragment
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  109 bits (273), Expect = 1e-30
 Identities = 53/66 (80%), Positives = 61/66 (92%)

Query: 64  QLLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAAL 123
            +LTKMKE AEAYLG +V +AV+TVPAYFND+QRQATKDAG IAGLNV+RI+NEPTAAA+
Sbjct: 119 MVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAI 178

Query: 124 AYGLDK 129
           AYGLDK
Sbjct: 179 AYGLDK 184

>d1jcea1 c.55.1.1 (A:4-140) Prokaryotic actin homolog MreB {Thermotoga maritima [TaxId: 2336]} Length = 137

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Prokaryotic actin homolog MreB
species: Thermotoga maritima [TaxId: 2336]

 Score = 81.0 bits (199), Expect = 2e-20
 Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 2/65 (3%)

Query: 64  QLLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAAL 123
            +L      A+  +       VI VP    D +R+A  DAG  AG + + ++ EP AAA+
Sbjct: 75  VMLRYFINKAKGGMNLFKPRVVIGVPIGITDVERRAILDAGLEAGASKVFLIEEPMAAAI 134

Query: 124 AYGLD 128
             G +
Sbjct: 135 --GSN 137

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	211
d1dkgd1	183	Heat shock protein 70kDa, ATPase fragment {Escheri	99.83
d1bupa1	185	Heat shock protein 70kDa, ATPase fragment {Cow (Bo	99.83
d1jcea1	137	Prokaryotic actin homolog MreB {Thermotoga maritim	99.6
d1jcea2	196	Prokaryotic actin homolog MreB {Thermotoga maritim	97.45
d1bupa2	193	Heat shock protein 70kDa, ATPase fragment {Cow (Bo	97.45
d1dkgd2	198	Heat shock protein 70kDa, ATPase fragment {Escheri	97.42
d2zgya2	163	Plasmid segregation protein ParM {Escherichia coli	96.56
d2fsja1	161	Hypothetical protein Ta0583 {Archaeon Thermoplasma	96.29
d2d0oa3	203	Diol dehydratase-reactivating factor large subunit	91.7
d1t6ca2	180	Exopolyphosphatase Ppx {Aquifex aeolicus [TaxId: 6	91.58
d1nbwa3	202	ATPase domain of the glycerol dehydratase reactiva	91.29
d1u6za3	177	Exopolyphosphatase Ppx {Escherichia coli [TaxId: 5	91.07
d1e4ft2	191	Cell division protein FtsA {Thermotoga maritima [T	88.8
d2fxua1	140	Actin {Cow (Bos taurus) [TaxId: 9913]}	81.38

>d1dkgd1 c.55.1.1 (D:3-185) Heat shock protein 70kDa, ATPase fragment {Escherichia coli, gene dnaK [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Heat shock protein 70kDa, ATPase fragment
species: Escherichia coli, gene dnaK [TaxId: 562]

Probab=99.83  E-value=2.4e-21  Score=155.80  Aligned_cols=109  Identities=53%  Similarity=0.733  Sum_probs=91.1

Q ss_pred             hhcccCcccchhhHhhhhhcCCCCC------------cc----------cceecceeeccccCCCchHHHHHHHHHHHHH
Q psy471           16 RQNQPCQATDNNIGYLARSFEGPEW------------DY----------GHVRLRKSFSPRCCHHSPRLFQLLTKMKETA   73 (211)
Q Consensus        16 a~~~~~~~p~n~~~~l~r~~~g~~~------------~~----------~~~~~~k~~speel~~~~~~a~iL~~L~~~a   73 (211)
                      +..+...+|.+.+..++|.+ |+.+            ++          .....++.|+|++|     ++++|++|++.|
T Consensus        52 A~~~~~~~p~~~i~~~Krll-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l-----~a~~L~~l~~~a  125 (183)
T d1dkgd1          52 AKRQAVTNPQNTLFAIKRLI-GRRFQDEEVQRDVSIMPFKIIAADNGDAWVEVKGQKMAPPQI-----SAEVLKKMKKTA  125 (183)
T ss_dssp             HHTTSTTCGGGEEECGGGTT-TCBSCSHHHHHHTTTCSSEEEECSSSBEEEEETTEEECHHHH-----HHHHHHHHHHHH
T ss_pred             HHHhhhcCCccEEeeeHHHc-CCCCCcHHHHhhhhcCCEEEEEcCCCcEEEEECCEEECHHHH-----HHHHHHHHHHHH
Confidence            44555567777777777766 3321            11          12234788999999     999999999999


Q ss_pred             HHhhccccceeeEccCCCccHHHHHHHHHHHHHhCCceeEEeechhHHHHHcccccC
Q psy471           74 EAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKN  130 (211)
Q Consensus        74 ~~~~g~~~~~vVItVPa~f~~~qR~al~~Aa~~aGl~~~~lv~EP~AAAl~y~~~~~  130 (211)
                      ++++|.++.++|||||++|++.||++|++||+.||+++++||+||+|||++|++.+.
T Consensus       126 ~~~~~~~~~~~VitVPa~f~~~~r~~l~~Aa~~AG~~~~~li~EP~AAAl~Ygl~k~  182 (183)
T d1dkgd1         126 EDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAYGLDKG  182 (183)
T ss_dssp             HHHHSSCCCEEEECBCTTCCHHHHHHHHHHHHHTTCEESCCCBHHHHHHHHHTCCC-
T ss_pred             HHHhCCCCCeEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHhcccCC
Confidence            999999999999999999999999999999999999999999999999999998764

>d1bupa1 c.55.1.1 (A:4-188) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Heat shock protein 70kDa, ATPase fragment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.83  E-value=3e-21  Score=155.47  Aligned_cols=109  Identities=56%  Similarity=0.750  Sum_probs=90.6

Q ss_pred             hhcccCcccchhhHhhhhhcCCCCC------------cccc-------------eecceeeccccCCCchHHHHHHHHHH
Q psy471           16 RQNQPCQATDNNIGYLARSFEGPEW------------DYGH-------------VRLRKSFSPRCCHHSPRLFQLLTKMK   70 (211)
Q Consensus        16 a~~~~~~~p~n~~~~l~r~~~g~~~------------~~~~-------------~~~~k~~speel~~~~~~a~iL~~L~   70 (211)
                      +..+...+|.+.+..++|.++ ..+            ++..             ....+.|+|++|     ++++|++|+
T Consensus        52 a~~~~~~~p~~~i~~~KrllG-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~el-----~a~~l~~l~  125 (185)
T d1bupa1          52 AKNQVAMNPTNTVFDAKRLIG-RRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEV-----SSMVLTKMK  125 (185)
T ss_dssp             HHTTTTTCGGGEECCHHHHTT-CCTTCHHHHHHHTTCSSEEEEETTEEEEEEEETTEEEEECHHHH-----HHHHHHHHH
T ss_pred             hHHHhhcCcccchhHHHHHhC-CCCccHHHHHHhhcCCceEEcCCCCccEEEEEcCCceEEcHHHH-----HHHHHHHHH
Confidence            445556677777777777664 322            1111             113577899999     999999999


Q ss_pred             HHHHHhhccccceeeEccCCCccHHHHHHHHHHHHHhCCceeEEeechhHHHHHcccccC
Q psy471           71 ETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKN  130 (211)
Q Consensus        71 ~~a~~~~g~~~~~vVItVPa~f~~~qR~al~~Aa~~aGl~~~~lv~EP~AAAl~y~~~~~  130 (211)
                      ..++.+++.++.++|||||++|++.||+++++||++||+++++||+||+|||++|+++++
T Consensus       126 ~~a~~~~~~~~~~~VitvPa~f~~~qr~~~~~Aa~~AGl~~~~li~EP~AAAl~Ygldkk  185 (185)
T d1bupa1         126 EIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYGLDKK  185 (185)
T ss_dssp             HHHHHHHTSCCCEEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEEEHHHHHHHHTTTTSC
T ss_pred             HHHHHHhCCCcCcEEEEECCCCCHHHHHHHHHHHHHcCCCeEEEEcCHHHHHHHhcccCC
Confidence            999999999999999999999999999999999999999999999999999999998753

>d1jcea1 c.55.1.1 (A:4-140) Prokaryotic actin homolog MreB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Prokaryotic actin homolog MreB
species: Thermotoga maritima [TaxId: 2336]

Probab=99.60  E-value=6.6e-16  Score=118.01  Aligned_cols=74  Identities=26%  Similarity=0.282  Sum_probs=69.5

Q ss_pred             cceeeccccCCCchHHHHHHHHHHHHHHHhhccccceeeEccCCCccHHHHHHHHHHHHHhCCceeEEeechhHHHHHc
Q psy471           47 LRKSFSPRCCHHSPRLFQLLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAY  125 (211)
Q Consensus        47 ~~k~~speel~~~~~~a~iL~~L~~~a~~~~g~~~~~vVItVPa~f~~~qR~al~~Aa~~aGl~~~~lv~EP~AAAl~y  125 (211)
                      .+..+++.++     ..+++.+++..+....+..+..+|||||++|+..||+++++||.+||+++++||+||+|||+++
T Consensus        63 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~VItVPa~f~~~qR~at~~Aa~~AGl~vv~li~EPtAAAiGa  136 (137)
T d1jcea1          63 RDGVIADYTV-----ALVMLRYFINKAKGGMNLFKPRVVIGVPIGITDVERRAILDAGLEAGASKVFLIEEPMAAAIGS  136 (137)
T ss_dssp             ETTEESSHHH-----HHHHHHHHHHHHHTSCCSCCCEEEEEECTTCCHHHHHHHHHHHHHTTCSEEEEEEHHHHHHHHT
T ss_pred             cCCccCcHHH-----HHHHHHHHHHHHHhhcCccccceEEEeecccCHHHHHHHHHHHHHcCCCEEEEeCCHHHHHhCC
Confidence            3566888888     9999999999999999999999999999999999999999999999999999999999999975

>d1jcea2 c.55.1.1 (A:141-336) Prokaryotic actin homolog MreB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Prokaryotic actin homolog MreB
species: Thermotoga maritima [TaxId: 2336]

Probab=97.45  E-value=3.3e-05  Score=59.23  Aligned_cols=24  Identities=0%  Similarity=-0.179  Sum_probs=21.2

Q ss_pred             CCCceEEEeecCCCceEEEEEecc
Q psy471          132 KGERNVKLPKMLEPLLVLTLRKKK  155 (211)
Q Consensus       132 ~~~~~vLV~D~GggT~Dvsv~~~~  155 (211)
                      ..+..+|||||||||||+||++..
T Consensus         4 ~~~~gvlV~DiGGGT~Dvsi~~~g   27 (196)
T d1jcea2           4 EEPSGNMVVDIGGGTTEVAVISLG   27 (196)
T ss_dssp             TSSSCEEEEEECSSCEEEEEEETT
T ss_pred             CCCCceEEEEcCCCcEEEEEEEcC
Confidence            367899999999999999999754

>d1bupa2 c.55.1.1 (A:189-381) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Heat shock protein 70kDa, ATPase fragment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.45  E-value=3.3e-05  Score=60.38  Aligned_cols=25  Identities=16%  Similarity=0.131  Sum_probs=22.1

Q ss_pred             CCceEEEeecCCCceEEEEEeccch
Q psy471          133 GERNVKLPKMLEPLLVLTLRKKKKK  157 (211)
Q Consensus       133 ~~~~vLV~D~GggT~Dvsv~~~~~~  157 (211)
                      ..++||||||||||+|+||+++.+.
T Consensus         3 ~e~~VlV~D~GggT~Dvsv~~~~~~   27 (193)
T d1bupa2           3 AERNVLIFDLGGGTFDVSILTIEDG   27 (193)
T ss_dssp             SCEEEEEEEECSSCEEEEEEEEETT
T ss_pred             CCcEEEEEEeCCCeEEEEEEEEeCC
Confidence            4678999999999999999998653

>d1dkgd2 c.55.1.1 (D:186-383) Heat shock protein 70kDa, ATPase fragment {Escherichia coli, gene dnaK [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Heat shock protein 70kDa, ATPase fragment
species: Escherichia coli, gene dnaK [TaxId: 562]

Probab=97.42  E-value=2.9e-05  Score=61.30  Aligned_cols=24  Identities=4%  Similarity=0.080  Sum_probs=21.0

Q ss_pred             CceEEEeecCCCceEEEEEeccch
Q psy471          134 ERNVKLPKMLEPLLVLTLRKKKKK  157 (211)
Q Consensus       134 ~~~vLV~D~GggT~Dvsv~~~~~~  157 (211)
                      .++||||||||||||+||+++...
T Consensus         2 ~~~vlV~D~GggT~Dvsv~~~~~~   25 (198)
T d1dkgd2           2 NRTIAVYDLGGGTFDISIIEIDEV   25 (198)
T ss_dssp             EEEEEEEEECSSCEEEEEEEEEC-
T ss_pred             CeEEEEEEcCCCcEEEEEEEEEcc
Confidence            468999999999999999998753

>d2zgya2 c.55.1.1 (A:158-320) Plasmid segregation protein ParM {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Plasmid segregation protein ParM
species: Escherichia coli [TaxId: 562]

Probab=96.56  E-value=0.00074  Score=50.17  Aligned_cols=22  Identities=5%  Similarity=-0.102  Sum_probs=19.7

Q ss_pred             CCceEEEeecCCCceEEEEEec
Q psy471          133 GERNVKLPKMLEPLLVLTLRKK  154 (211)
Q Consensus       133 ~~~~vLV~D~GggT~Dvsv~~~  154 (211)
                      ...++||+|+||||||+++++-
T Consensus         5 e~~~ilViDiGggTtDi~v~~~   26 (163)
T d2zgya2           5 ELDSLLIIDLGGTTLDISQVMG   26 (163)
T ss_dssp             TTCEEEEEEECSSCEEEEEEEG
T ss_pred             CCCCEEEEECCCCcEEEEEEcC
Confidence            5678999999999999999874

>d2fsja1 c.55.1.12 (A:165-325) Hypothetical protein Ta0583 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Ta0583-like
domain: Hypothetical protein Ta0583
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=96.29  E-value=0.0013  Score=49.03  Aligned_cols=22  Identities=0%  Similarity=-0.340  Sum_probs=19.8

Q ss_pred             CCceEEEeecCCCceEEEEEec
Q psy471          133 GERNVKLPKMLEPLLVLTLRKK  154 (211)
Q Consensus       133 ~~~~vLV~D~GggT~Dvsv~~~  154 (211)
                      .+.++||+|+||||||++++..
T Consensus         4 ~~g~~lviDIG~gTtDi~v~~~   25 (161)
T d2fsja1           4 QPGYGVVIDVGSRTTDVLTINL   25 (161)
T ss_dssp             CSSEEEEEEECSSCEEEEEEET
T ss_pred             CCCcEEEEEcCcCeEEEEEEEC
Confidence            5678999999999999999874

>d2d0oa3 c.55.1.6 (A:404-606) Diol dehydratase-reactivating factor large subunit DdrA {Klebsiella oxytoca [TaxId: 571]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: ATPase domain of dehydratase reactivase alpha subunit
domain: Diol dehydratase-reactivating factor large subunit DdrA
species: Klebsiella oxytoca [TaxId: 571]

Probab=91.70  E-value=0.05  Score=42.07  Aligned_cols=23  Identities=9%  Similarity=-0.003  Sum_probs=19.6

Q ss_pred             CceEEEeecCCCceEEEEEeccc
Q psy471          134 ERNVKLPKMLEPLLVLTLRKKKK  156 (211)
Q Consensus       134 ~~~vLV~D~GggT~Dvsv~~~~~  156 (211)
                      ...+.|+||||||+|.|++..++
T Consensus         3 ~~PlAIlDlGaGStDAsii~~~g   25 (203)
T d2d0oa3           3 TRPLAILDLGAGSTDASIINPKG   25 (203)
T ss_dssp             CSSEEEEEECSSEEEEEEECTTC
T ss_pred             CCceEEEEcCCCcccHHHhCCCC
Confidence            45689999999999999987654

>d1t6ca2 c.55.1.8 (A:133-312) Exopolyphosphatase Ppx {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Ppx/GppA phosphatase
domain: Exopolyphosphatase Ppx
species: Aquifex aeolicus [TaxId: 63363]

Probab=91.58  E-value=0.051  Score=41.29  Aligned_cols=21  Identities=14%  Similarity=-0.083  Sum_probs=18.3

Q ss_pred             CceEEEeecCCCceEEEEEec
Q psy471          134 ERNVKLPKMLEPLLVLTLRKK  154 (211)
Q Consensus       134 ~~~vLV~D~GggT~Dvsv~~~  154 (211)
                      .+.+||+|+|||+|.+++++-
T Consensus         2 e~~~lviDIGGGStEli~~~~   22 (180)
T d1t6ca2           2 EGEVCVVDQGGGSTEYVFGKG   22 (180)
T ss_dssp             CSEEEEEEEETTEEEEEEEET
T ss_pred             CCCEEEEEeCCChHhhEEeeC
Confidence            357999999999999999864

>d1nbwa3 c.55.1.6 (A:406-607) ATPase domain of the glycerol dehydratase reactivase alpha subunit {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: ATPase domain of dehydratase reactivase alpha subunit
domain: ATPase domain of the glycerol dehydratase reactivase alpha subunit
species: Klebsiella pneumoniae [TaxId: 573]

Probab=91.29  E-value=0.059  Score=41.72  Aligned_cols=23  Identities=0%  Similarity=-0.112  Sum_probs=19.5

Q ss_pred             CceEEEeecCCCceEEEEEeccc
Q psy471          134 ERNVKLPKMLEPLLVLTLRKKKK  156 (211)
Q Consensus       134 ~~~vLV~D~GggT~Dvsv~~~~~  156 (211)
                      +..+.|+||||||+|.+++..++
T Consensus         3 ~~plaIlDlG~GStDasii~~~g   25 (202)
T d1nbwa3           3 AAPLAILDLGAGSTDAAIVNAEG   25 (202)
T ss_dssp             CSSEEEEEECSSEEEEEEECSSS
T ss_pred             CCceEEEEcCCCccchhhccCCC
Confidence            45689999999999999987554

>d1u6za3 c.55.1.8 (A:136-312) Exopolyphosphatase Ppx {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Ppx/GppA phosphatase
domain: Exopolyphosphatase Ppx
species: Escherichia coli [TaxId: 562]

Probab=91.07  E-value=0.066  Score=40.00  Aligned_cols=19  Identities=5%  Similarity=-0.127  Sum_probs=16.6

Q ss_pred             ceEEEeecCCCceEEEEEe
Q psy471          135 RNVKLPKMLEPLLVLTLRK  153 (211)
Q Consensus       135 ~~vLV~D~GggT~Dvsv~~  153 (211)
                      ...||+|+|||+|.+++++
T Consensus         2 gr~Lv~DIGGGStEl~~~~   20 (177)
T d1u6za3           2 GRKLVIDIGGGSTELVIGE   20 (177)
T ss_dssp             SCEEEEEECSSCEEEEEEE
T ss_pred             CCEEEEEeCCChhheEEEE
Confidence            3579999999999999875

>d1e4ft2 c.55.1.1 (T:200-390) Cell division protein FtsA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Cell division protein FtsA
species: Thermotoga maritima [TaxId: 2336]

Probab=88.80  E-value=0.12  Score=39.37  Aligned_cols=21  Identities=19%  Similarity=0.112  Sum_probs=18.1

Q ss_pred             CceEEEeecCCCceEEEEEec
Q psy471          134 ERNVKLPKMLEPLLVLTLRKK  154 (211)
Q Consensus       134 ~~~vLV~D~GggT~Dvsv~~~  154 (211)
                      ...++|+|||++||++++++-
T Consensus         6 ~~Gv~vvDiG~~tt~i~i~~~   26 (191)
T d1e4ft2           6 DRGVVVVNLGYNFTGLIAYKN   26 (191)
T ss_dssp             HHCEEEEEECSSCEEEEEEET
T ss_pred             hCCEEEEEeCCCcEEEEEEEC
Confidence            356899999999999999863

>d2fxua1 c.55.1.1 (A:7-146) Actin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Actin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=81.38  E-value=2.7  Score=29.44  Aligned_cols=45  Identities=13%  Similarity=0.117  Sum_probs=39.0

Q ss_pred             ceeeEccCCCccHHHHHHHHHH-HHHhCCceeEEeechhHHHHHcc
Q psy471           82 RDAVITVPAYFNDAQRQATKDA-GAIAGLNVMRIVNEPTAAALAYG  126 (211)
Q Consensus        82 ~~vVItVPa~f~~~qR~al~~A-a~~aGl~~~~lv~EP~AAAl~y~  126 (211)
                      ..++||-|...+..+|+.+.+. .+..+++.+.+...|.++++++|
T Consensus        95 ~pvlltE~~~~~~~~r~~~~EilFE~~~vp~~~~~~~~~ls~ys~G  140 (140)
T d2fxua1          95 HPTLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASG  140 (140)
T ss_dssp             SCEEEEECTTCCHHHHHHHHHHHHHTTCCSEEEEEEHHHHHHHHTT
T ss_pred             CcceeeccCCCCHHHHHHHHHHhhccCCCCEEEEEhhHHhHhhcCC
Confidence            4699999999999999988776 46779999999999999998765