Psyllid ID: psy4724

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------1200------1210------1220------1230------1240------1250------1260------1270------1280------1290------1300------1310------1320------1330------1340------1350------1360------1370------1380------1390------1400------1410------1420------1430------1440------1450------1460------1470------1480------1490------1500------1510------1520------1530------1540------1550------1560------1570------1580------1590------1600------1610------1620------1630------1640------1650

MKMWKNKKTERKERDLNASPLVYDEIDNLDLLTEKINQYIVDYNTQNSNKPIDIVTFLYIIQHISRLCRILQQPKGHAMLITIGGSGAAEVTKLATFMNEYVLFEIEILKTYGLTDWRDDLCRLMKKSGGKDAKPMTFLFSDTQIQNEVFVEHINMLLNTARKRYNMDLTKSYGVCPSMSIVHHLEDLNASPLVYDEIDNLDLLTEKINQYIVDYNTQNSNKPIDIVTFLYIIQHISRLCRILQQPKGHAMLITIGTYRVERKIALGRVHIIRTEKEIDDARMMYIPVSKHSSVLFFCCAELSNIDPMYQYSLNWFINLYVQSIEGSEKTDQLDKRLKILMNHFTYSIYKNICRSLFEDHKLVFSFVLCTGQGEIAKSYIDEGLKKGLWIVLQNCHVAKSWMKELERICAEVIVPANTHQEFRLWLTSYPSTTFPVSVLENGIKMIIEPPKGIKNNLLRSYTNDPINSDDFYNDSKNVAAWHKLLFSLCLFHAVVQERKQYGPLGWNIPYEFNLSDLNISMKQLQMFLNDYTTIPFDALIYLTVDYKYTSQMRQKNPFTLTISRTTQIIEDFMLCIKKGLWIVLQNCHVAKSWMKELERICAEVIVPANTHQEFRLWLTSYPSTTFPVSVLENGIKMIIEPPKGIKNNLFRSYTNDPINSDDFYNDSKNVAAWHKLLFSLCLFHAVVQERKQYGPLGWNIPYEFNLSDLNISMKQLQMFLNDYTTIPFDALIYLTASIPFQVLAMEVYDRVIKIVGPKKAKLAEAEADYAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQKLERAEKLIGGLGGEKTRWSEASANLSKALVNCIGDILICAGIITYLGAFTVDFRNDLIEQWKSLSSQEQMPFTLSFSMITTLGDAVKIRSWNINGLPVDNFSIENGIILFNSNKWPLLIDPQGQANKWLKNVEKGNLSVVKLTDATLLRTLERAIRTGTAVLLENIQETIDSSLEPVLLKSYYKIQNQLIMTLNNKEIEYNIKFRLYITTRLKNPHYIPEILTKITLINFMITPQGLQNQLLGIVVAKEKPDLETKKNELIIESANNKKILKETEDKILEVLSSSQGNILEDESAVQILTSSKVLSAEITAKQEISSRTEKEIDDARMMYIPVSKHSSVLFFCCAELSNIDPMYQYSLNWFINLYVQSIEGSEKTDQLDKRLKILMNHFTYSIYKNICRSLFEDHKLVFSFVLCTGIQRSNETLDETLFKYFLTGSIDLTMDSPNPSPSWLSNKTWTDIIQISKLPQLGDLKASVKTKNSEWKSYYDSKTPEKERVSYVQDKSDICVLNILKIIRPDKVIQGIQIYVSKNLGEQYIVSPPFSLKQSYDDSNCCTPLIFILSAGSDPMDLLLKFNSDMNAAKPLTVSLGQGIQSYIQSLPLNNTPEIFGLHENADLTKNFNETRLVLGNILLCAQQGSTPGAQPGDAEAKNVRIIDELLGKFPEQFDEEAAGRKYPILYNQSMNTVLKQELIRYNRLTVIIKKSLQEVRQAVKGLIVMSKELEEINTSIMFGKIPQAWASKSYPSLKPLGSYIVDLLARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREGGGGGEKELVQKN

ccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcccccccccEEcHHHHHHHHHHHHHHHccccccEEEEEcccccHHHHHHHHHHHccccEEEEEEccccccccHHHHHHHHHHHHHccccccEEEEEccccccccHHHHHHHHHcccccccccccccccccccccccHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccEEEcHHHHHHHHHHHHHHcccccHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHccccccccHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHccHHHHcccccccccHHHHHHHHHHHHccccccHHHHHHHHHHcccccccccccHHHHHHcccccHHHHHHHHccccccccccccccccccccccccHHHHHHHHccccccccEEEccccccccccccccccccccccccEEEccccccHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHcccEEEEEcccHHHHHHHHHHHHHHHHcccccccccccEEEEccccccccHHHHHHHHHHccccccccccccccccccccccccccccccccccccHHHHHHHccccHHHHHHHHccccccccccccccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHcccccccccccccccHHHHccccccccccccHHHHHHHHHHHcccccEEEEcccHHHHHHHHHHHHcccEEEEEcccccccccccccHHHHHHHcccEEEEEEcccccccccccEEEEcccccccccccccHHHEEEEEccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHccccHHHHHcccccccHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHccccccccccccccccccHHcHHHHHHccccccccccHHHHHHcHHHHHHHHcccccccccccccccccHHHHHHHHHcccccHHHHHHHHHHHHcccccccccccccHHHHHHcccccccEEEEccccccHHHHHHHHHHHccccccEEccccccHHHHHHccccccccccEEEEcccccccHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHccccccHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHccHHHHHHHHHHHcccccccHHHccccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccc

ccccccccccccccccccccccEcccccHHHHHHHHHHHHHHHHcccccccccEHHHHHHHHHHHHHHHHHHcccccEEEEEccccHHHHHHHHHHHHHcccEEEEEEEcccccHHHHHHHHHHHHHHcccccccEEEEEEccccccHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHccEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHcccEEEccccccccHHHHHHHHHHHHHHHccccccccHHHHHHccccccccHHHHHccHHHHcccHHHHHHHHcccccccccccHHHHHHcccHHHHHHHHHHHHHcccccccccccccccccccccHcHccccccccccEEEEEcccccHHHHHHHHHHHccccccccccccEEEEcccccHHHHHHHHHHHcccEEEEEcHHHHHHHHHHHHHHHHHHccccccccccEEEEEccccccccEEEEEcccEEcccccccHHHHHHHHHHccccccHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHccccEEEccHcHHHHHHcHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHcccccEHHHHHHccccccccccccEEEEEcccccccEEccHHHHHHHHHHHcccccEEEEEcccHHHHHHHHHHHccccEEEEcccccccHHHHHHHHHHHHHccccEEEEEcccEEEEcccEEEEEEEccccccccccEEEEEEEEEEEEccccHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHcccccccccccccccHccHHHHHHHHHHHccHHHcccHHHHHHcHHHHHHHHccccccccccccHHcHHHHHHHHHHHHccccHHHHHHHHHHHHHccccEcccccccHHHHHccccccccEEEEEcccccHHHHHHHHHHHcccccEEEEEcccccHHHHHHccccccccEccccccccHHHcccccHHHHHHHHEccccccccccccccHHHHHHHHHHHHHHHccccccHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccEEEEcHHHHHHHHHHHcccccHHHHHHcccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHccc

mkmwknkkterkerdlnasplvydeidnlDLLTEKINQYIVDYntqnsnkpidIVTFLYIIQHISRLCRILQQPKGHAMLITIGGSGAAEVTKLATFMNEYVLFEIEILKTYGLTDWRDDLCRLMKksggkdakpmtflfsdtqiQNEVFVEHINMLLNTARKRYNMdltksygvcpsmsivhhledlnasplvydeidnlDLLTEKINQYIVDYntqnsnkpidIVTFLYIIQHISRLCRILQQPKGHAMLITIGTYRVERKIALGRVHIIRTEKEiddarmmyipvskhsSVLFFCCaelsnidpmyqySLNWFINLYVQSIEGSEKTDQLDKRLKILMNHFTYSIYKNICRSLFEDHKLVFSFVLCTGQGEIAKSYIDEGLKKGLWIVLQNCHVAKSWMKELERICAEVIVPANTHQEFRLWltsypsttfpvsvLENGIkmiieppkgiknnllrsytndpinsddfyndskNVAAWHKLLFSLCLFHAVVQERkqygplgwnipyefnlsDLNISMKQLQMFLNdyttipfdALIYLTVDYKytsqmrqknpftltISRTTQIIEDFMLCIKKGLWIVLQNCHVAKSWMKELERICAEVIVPANTHQEFRLWltsypsttfpvsvLENGIkmiieppkgiknnlfrsytndpinsddfyndskNVAAWHKLLFSLCLFHAVVQERkqygplgwnipyefnlsDLNISMKQLQMFLNDYTTIPFDALIYLTASIPFQVLAMEVYDRVIKIVGPKKAKLAEAEADYAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQKLERAEKLIGglggektrWSEASANLSKALVNCIGDILICAGIITYLGAFTVDFRNDLIEQWKslssqeqmpftlSFSMITTLGDAVKIRswninglpvdnfsiengiilfnsnkwpllidpqgqaNKWLKNVEKGNLSVVKLTDATLLRTLERAIRTGTAVLLENIQETidsslepvLLKSYYKIQNQLIMTLNNKEIEYNIKFRLYITTrlknphyipeILTKITLInfmitpqglqnQLLGIVVakekpdletkkNELIIESANNKKILKETEDKILEVLSSsqgniledESAVQILTSSKVLSAEITAKQEISSRTEKEIDdarmmyipvskhsSVLFFCCaelsnidpmyqySLNWFINLYVQSIEGSEKTDQLDKRLKILMNHFTYSIYKNICRSLFEDHKLVFSFVLCTGIQRSNETLDETLFKYFLTgsidltmdspnpspswlsnktwtdiiqisklpqlgdlkasvktknsewksyydsktpekervsyvqdksdicVLNIlkiirpdkviQGIQIYVSknlgeqyivsppfslkqsyddsncctpLIFILSAGSDPMDLLLKFNsdmnaakpltVSLGQGIQSYIqslplnntpeifglhenadltknFNETRLVLGNILLcaqqgstpgaqpgdaeakNVRIIDELLgkfpeqfdeeaagrkypilynqSMNTVLKQELIRYNRLTVIIKKSLQEVRQAVKGLIVMSKELEEINTSImfgkipqawasksypslkplgSYIVDLLARregrgekkKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKkkkysregggggekeLVQKN

mkmwknkkterkerdlnasplvydEIDNLDLLTEKINQYIVDYntqnsnkpIDIVTFLYIIQHISRLCRILQQPKGHAMLITIGGSGAAEVTKLATFMNEYVLFEIEILKtygltdwrDDLCRLMKKSGGKDAKPMTFLFSDTQIQNEVFVEHINMLLNTARKRYNMDLTKSYGVCPSMSIVHHLEDLNASPLVYDEIDNLDLLTEKINQYIVDYntqnsnkpIDIVTFLYIIQHISRLCRILQQPKGHAMLITIGTYrverkialgrvhiirtekeiddARMMYIPVSKHSSVLFFCCAELSNIDPMYQYSLNWFINLYVQSIEGSEKTDQLDKRLKILMNHFTYSIYKNICRSLFEDHKLVFSFVLCTGQGEIAKSYIDEGLKKGLWIVLQNCHVAKSWMKELERICAEVIVPANTHQEFRLWLTSYPSTTFPVSVLENGIKMIIEPPKGIKNNLLRSYTNDPINSDDFYNDSKNVAAWHKLLFSLCLFHAVVQERKQYGPLGWNIPYEFNLSDLNISMKQLQMFLNDYTTIPFDALIYLTVDYKYTSQmrqknpftltiSRTTQIIEDFMLCIKKGLWIVLQNCHVAKSWMKELERICAEVIVPANTHQEFRLWLTSYPSTTFPVSVLENGIKMIIEPPKGIKNNLFRSYTNDPINSDDFYNDSKNVAAWHKLLFSLCLFHAVVQERKQYGPLGWNIPYEFNLSDLNISMKQLQMFLNDYTTIPFDALIYLTASIPFQVLAMEVYDRVIKIVGPKKAKLAEAEADYAVQMEKLNSKRAQLATVLGKLQALRDELAqkskdkkelEDQIELCKQKLERAEKLIGGLGGEKTRWSEASANLSKALVNCIGDILICAGIITYLGAFTVDFRNDLIEQWKSLSSQEQMPFTLSFSMITTLGDAVKIRSWNINGLPVDNFSIENGIILFNSNKWPLLIDPQGQANKWLKnvekgnlsvvkltdatlLRTLERAIRTGTAVLLENIQETIDSSLEPVLLKSYYKIQNQLIMTLNNKEIEYNIKFRLYITTRLKNPHYIPEILTKITLINFMITPQGLQNQLLGIVVAKekpdletkkneliiesannkkilKETEDKILEVLSssqgniledESAVQILTsskvlsaeitakqeissrtekeiDDARMMYIPVSKHSSVLFFCCAELSNIDPMYQYSLNWFINLYVQSIEGSEKTDQLDKRLKILMNHFTYSIYKNICRSLFEDHKLVFSFVLCTGIQRSNETLDETLFKYFLTGSIDLTMDSPNPSPSWLSNKTWTDIIQIsklpqlgdlkasvktknsewksyydsktpekervsyvqdksdiCVLNIlkiirpdkvIQGIQIYVSKNLGEQYIVSPPFSLKQSYDDSNCCTPLIFILSAGSDPMDLLLKFNSDMNAAKPLTVSLGQGIQSYIQSLPLNNTPEIFGLHENADLTKNFNETRLVLGNILLCAQQGSTPGAQPGDAEAKNVRIIDELLGKFPEQFDEEAAGRKYPILYNQSMNTVLKQELIRYNRLTVIIKKSLQEVRQAVKGLIVMSKELEEINTSIMFGKIPQAWASKSYPSLKPLGSYIVDLlarregrgekkkkkkkkkkkkkkkkkkkkkkkkkykkkkkkkkkkkkkkkkkkkkkkkkkkysregggggekelvqkn

MKMWKNKKTERKERDLNASPLVYDEIDNLDLLTEKINQYIVDYNTQNSNKPIDIVTFLYIIQHISRLCRILQQPKGHAMLITIGGSGAAEVTKLATFMNEYVLFEIEILKTYGLTDWRDDLCRLMKKSGGKDAKPMTFLFSDTQIQNEVFVEHINMLLNTARKRYNMDLTKSYGVCPSMSIVHHLEDLNASPLVYDEIDNLDLLTEKINQYIVDYNTQNSNKPIDIVTFLYIIQHISRLCRILQQPKGHAMLITIGTYRVERKIALGRVHIIRTEKEIDDARMMYIPVSKHSSVLFFCCAELSNIDPMYQYSLNWFINLYVQSIEGSEKTDQLDKRLKILMNHFTYSIYKNICRSLFEDHKLVFSFVLCTGQGEIAKSYIDEGLKKGLWIVLQNCHVAKSWMKELERICAEVIVPANTHQEFRLWLTSYPSTTFPVSVLENGIKMIIEPPKGIKNNLLRSYTNDPINSDDFYNDSKNVAAWHKLLFSLCLFHAVVQERKQYGPLGWNIPYEFNLSDLNISMKQLQMFLNDYTTIPFDALIYLTVDYKYTSQMRQKNPFTLTISRTTQIIEDFMLCIKKGLWIVLQNCHVAKSWMKELERICAEVIVPANTHQEFRLWLTSYPSTTFPVSVLENGIKMIIEPPKGIKNNLFRSYTNDPINSDDFYNDSKNVAAWHKLLFSLCLFHAVVQERKQYGPLGWNIPYEFNLSDLNISMKQLQMFLNDYTTIPFDALIYLTASIPFQVLAMEVYDRVIKIVGPKKAKLAEAEADYAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQKLERAEKLIGGLGGEKTRWSEASANLSKALVNCIGDILICAGIITYLGAFTVDFRNDLIEQWKSLSSQEQMPFTLSFSMITTLGDAVKIRSWNINGLPVDNFSIENGIILFNSNKWPLLIDPQGQANKWLKNVEKGNLSVVKLTDATLLRTLERAIRTGTAVLLENIQETIDSSLEPVLLKSYYKIQNQLIMTLNNKEIEYNIKFRLYITTRLKNPHYIPEILTKITLINFMITPQGLQNQLLGIVVAKEKPDLETKKNELIIESANNKKILKETEDKILEVLSSSQGNILEDESAVQILTSSKVLSAEITAKQEISSRTEKEIDDARMMYIPVSKHSSVLFFCCAELSNIDPMYQYSLNWFINLYVQSIEGSEKTDQLDKRLKILMNHFTYSIYKNICRSLFEDHKLVFSFVLCTGIQRSNETLDETLFKYFLTGSIDLTMDSPNPSPSWLSNKTWTDIIQISKLPQLGDLKASVKTKNSEWKSYYDSKTPEKERVSYVQDKSDICVLNILKIIRPDKVIQGIQIYVSKNLGEQYIVSPPFSLKQSYDDSNCCTPLIFILSAGSDPMDLLLKFNSDMNAAKPLTVSLGQGIQSYIQSLPLNNTPEIFGLHENADLTKNFNETRLVLGNILLCAQQGSTPGAQPGDAEAKNVRIIDELLGKFPEQFDEEAAGRKYPILYNQSMNTVLKQELIRYNRLTVIIKKSLQEVRQAVKGLIVMSKELEEINTSIMFGKIPQAWASKSYPSLKPLGSYIVDLLARREGRGEkkkkkkkkkkkkkkkkkkkkkkkkkykkkkkkkkkkkkkkkkkkkkkkkkkkYSREGGGGGEKELVQKN

*******************PLVYDEIDNLDLLTEKINQYIVDYNTQNSNKPIDIVTFLYIIQHISRLCRILQQPKGHAMLITIGGSGAAEVTKLATFMNEYVLFEIEILKTYGLTDWRDDLCRL************TFLFSDTQIQNEVFVEHINMLLNTARKRYNMDLTKSYGVCPSMSIVHHLEDLNASPLVYDEIDNLDLLTEKINQYIVDYNTQNSNKPIDIVTFLYIIQHISRLCRILQQPKGHAMLITIGTYRVERKIALGRVHIIRTEKEIDDARMMYIPVSKHSSVLFFCCAELSNIDPMYQYSLNWFINLYVQSIEGSEKTDQLDKRLKILMNHFTYSIYKNICRSLFEDHKLVFSFVLCTGQGEIAKSYIDEGLKKGLWIVLQNCHVAKSWMKELERICAEVIVPANTHQEFRLWLTSYPSTTFPVSVLENGIKMIIEPPKGIKNNLLRSYTNDPINSDDFYNDSKNVAAWHKLLFSLCLFHAVVQERKQYGPLGWNIPYEFNLSDLNISMKQLQMFLNDYTTIPFDALIYLTVDYKYTSQMRQKNPFTLTISRTTQIIEDFMLCIKKGLWIVLQNCHVAKSWMKELERICAEVIVPANTHQEFRLWLTSYPSTTFPVSVLENGIKMIIEPPKGIKNNLFRSYTNDPINSDDFYNDSKNVAAWHKLLFSLCLFHAVVQERKQYGPLGWNIPYEFNLSDLNISMKQLQMFLNDYTTIPFDALIYLTASIPFQVLAMEVYDRVIKIVGPKKAKLAEAEADYAVQ**********LATVLGKL******************************AEKLIGGLGGEKTRWSEASANLSKALVNCIGDILICAGIITYLGAFTVDFRNDLIEQWKSLSSQEQMPFTLSFSMITTLGDAVKIRSWNINGLPVDNFSIENGIILFNSNKWPLLIDPQGQANKWLKNVEKGNLSVVKLTDATLLRTLERAIRTGTAVLLENIQETIDSSLEPVLLKSYYKIQNQLIMTLNNKEIEYNIKFRLYITTRLKNPHYIPEILTKITLINFMITPQGLQNQLLGIVVAKE**********LII***************************************************************ARMMYIPVSKHSSVLFFCCAELSNIDPMYQYSLNWFINLYVQSIEGSEKTDQLDKRLKILMNHFTYSIYKNICRSLFEDHKLVFSFVLCTGIQRSNETLDETLFKYFLTGSIDLTM********WLSNKTWTDIIQISKLPQLGDLK***********************VSYVQDKSDICVLNILKIIRPDKVIQGIQIYVSKNLGEQYIVSPPFSLKQSYDDSNCCTPLIFILSAGSDPMDLLLKFNSDMNAAKPLTVSLGQGIQSYIQSLPLNNTPEIFGLHENADLTKNFNETRLVLGNILLCAQ***************NVRIIDELLGKFPEQFDEEAAGRKYPILYNQSMNTVLKQELIRYNRLTVIIKKSLQEVRQAVKGLIVMSKELEEINTSIMFGKIPQAWASKSYPSLKPLGSYIVDLLA****************************************************************************

*********E*****LNASPLVYDEIDNLDLLTEKINQYIVDYNTQNSNKPIDIVTFLYIIQHISRLCRILQQPKGHAMLITIGGSGAAEVTKLATFMNEYVLFEIEILKTYGLTDWRDDLCRLMKKSGGKDAKPMTFLFSDTQIQNEVFVEHINMLLNTARKRYNMDLTKSYGVCPSMSIVHHLEDLNASPLVYDEIDNLDLLTEKINQYIVDYNTQNSNKPIDIVTFLYIIQHISRLCRILQQPKGHAMLITIGTYRV***********IRTEKEIDDARMMYIPVSKHSSVLFFCCAELSNIDPMYQYSLNWFINLYVQSIE********DKRLKILMNHFTYSIYKNICRSLFEDHKLVFSFVLCTGQGEIAKSYIDEGLKKGLWIVLQNCHVAKSWMKELERICAEVIVPANTHQEFRLWLTSYPSTTFPVSVLENGIKMIIEPPKGIKNNLLRSYTNDPINSDDFYNDSKNVAAWHKLLFSLCLFHAVVQERKQYGPLGWNIPYEFNLSDLNISMKQLQMFLNDYTTIPFDALIYLTVDYK********************IIEDFMLCIKKGLWIVLQNCHVAKSWMKELERICAEVIVPANTHQEFRLWLTSYPSTTFPVSVLENGIKMIIEPPKGIKNNLFRSYTNDPINSD**YNDSKNVAAWHKLLFSLCLFHAVVQERKQYGPLGWNIPYEFNLSDLNISMKQLQMFLNDYTTIPFDALIYLTASIPFQVLAMEVYDRVIKIVGPKKAKLAEAEADYAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKD*KELEDQIELCKQKLERAEKLIGGLGGEKTRWSEASANLSKALVNCIGDILICAGIITYLGAFTVDFRNDLIEQWKSLSSQEQMPFTLSFSMITTLGDAVKIRSWNINGLPVDNFSIENGIILFNSNKWPLLIDPQGQANKWLKNVEKGNLSVVKLTDATLLRTLERAIRTGTAVLLENIQETIDSSLEPVLLKSYYKIQNQLIMTLNNKEIEYNIKFRLYITTRLKNPHYIPEILTKITLINFMITPQGLQNQLLGIVVAKEKPDLETKKNELIIESANNKKILKETEDKILEVLSSSQGNILEDESAVQILTSSKVLSAEITAKQEISSRTEKEIDDARMMYIPVSKHSSVLFFCCAELSNIDPMYQYSLNWFINLYVQSIEGS****QLDKRLKILMNHFTYSIYKNICRSLFEDHKLVFSFVLCTGIQRSNETLDETLFKYFLTGSIDLTMDSPNPSPSWLSNKTWTDIIQISKLPQLGDLKASVKTKNSEWKSYYDSKTPEKERVSYVQDKSDICVLNILKIIRPDKVIQGIQIYVSKNLGEQYIVSPPFSLKQSYDDSNCCTPLIFILSAGSDPMDLLLKFNSDMNAAKPL*******IQSYIQSLPLNNTPEIFGLHENADLTKNFNETRLVLGN***********************RIIDELLGKFPEQFDEEAAGRKYPILYNQSMNTVLKQELIRYNRLTVIIKKSLQEVRQAVKGLIVMSKELEEINTSIMFGKIPQAWASKSYPSLKPLGSYIVDLLARREGRGEK********************************************************************

*************RDLNASPLVYDEIDNLDLLTEKINQYIVDYNTQNSNKPIDIVTFLYIIQHISRLCRILQQPKGHAMLITIGGSGAAEVTKLATFMNEYVLFEIEILKTYGLTDWRDDLCRLMKKSGGKDAKPMTFLFSDTQIQNEVFVEHINMLLNTARKRYNMDLTKSYGVCPSMSIVHHLEDLNASPLVYDEIDNLDLLTEKINQYIVDYNTQNSNKPIDIVTFLYIIQHISRLCRILQQPKGHAMLITIGTYRVERKIALGRVHIIRTEKEIDDARMMYIPVSKHSSVLFFCCAELSNIDPMYQYSLNWFINLYVQSIEGSEKTDQLDKRLKILMNHFTYSIYKNICRSLFEDHKLVFSFVLCTGQGEIAKSYIDEGLKKGLWIVLQNCHVAKSWMKELERICAEVIVPANTHQEFRLWLTSYPSTTFPVSVLENGIKMIIEPPKGIKNNLLRSYTNDPINSDDFYNDSKNVAAWHKLLFSLCLFHAVVQERKQYGPLGWNIPYEFNLSDLNISMKQLQMFLNDYTTIPFDALIYLTVDYKYTSQMRQKNPFTLTISRTTQIIEDFMLCIKKGLWIVLQNCHVAKSWMKELERICAEVIVPANTHQEFRLWLTSYPSTTFPVSVLENGIKMIIEPPKGIKNNLFRSYTNDPINSDDFYNDSKNVAAWHKLLFSLCLFHAVVQERKQYGPLGWNIPYEFNLSDLNISMKQLQMFLNDYTTIPFDALIYLTASIPFQVLAMEVYDRVIKIVGPKKAKLAEAEADYAVQMEKLNSKRAQLATVLGKLQALRDELA**********DQIELCKQKLERAEKLIGGLGGEKTRWSEASANLSKALVNCIGDILICAGIITYLGAFTVDFRNDLIEQWKSLSSQEQMPFTLSFSMITTLGDAVKIRSWNINGLPVDNFSIENGIILFNSNKWPLLIDPQGQANKWLKNVEKGNLSVVKLTDATLLRTLERAIRTGTAVLLENIQETIDSSLEPVLLKSYYKIQNQLIMTLNNKEIEYNIKFRLYITTRLKNPHYIPEILTKITLINFMITPQGLQNQLLGIVVAKEKPDLETKKNELIIESANNKKILKETEDKILEVLSSSQGNILEDESAVQILTSSKVLSAEITAKQEISSRTEKEIDDARMMYIPVSKHSSVLFFCCAELSNIDPMYQYSLNWFINLYVQSIEGSEKTDQLDKRLKILMNHFTYSIYKNICRSLFEDHKLVFSFVLCTGIQRSNETLDETLFKYFLTGSIDLTMDSPNPSPSWLSNKTWTDIIQISKLPQLGDLKASVKTKNSEWKSYYDSKTPEKERVSYVQDKSDICVLNILKIIRPDKVIQGIQIYVSKNLGEQYIVSPPFSLKQSYDDSNCCTPLIFILSAGSDPMDLLLKFNSDMNAAKPLTVSLGQGIQSYIQSLPLNNTPEIFGLHENADLTKNFNETRLVLGNILLCAQQG**********EAKNVRIIDELLGKFPEQFDEEAAGRKYPILYNQSMNTVLKQELIRYNRLTVIIKKSLQEVRQAVKGLIVMSKELEEINTSIMFGKIPQAWASKSYPSLKPLGSYIVDLLARRE*************************************************************************

*****NKKTERKERDLNASPLVYDEIDNLDLLTEKINQYIVDYNTQNSNKPIDIVTFLYIIQHISRLCRILQQPKGHAMLITIGGSGAAEVTKLATFMNEYVLFEIEILKTYGLTDWRDDLCRLMKKSGGKDAKPMTFLFSDTQIQNEVFVEHINMLLNTARKRYNMDLTKSYGVCPSMSIVHHLEDLNASPLVYDEIDNLDLLTEKINQYIVDYNTQNSNKPIDIVTFLYIIQHISRLCRILQQPKGHAMLITIGTYRVERKIALGRVHIIRTEKEIDDARMMYIPVSKHSSVLFFCCAELSNIDPMYQYSLNWFINLYVQSIEGSEKTDQLDKRLKILMNHFTYSIYKNICRSLFEDHKLVFSFVLCTGQGEIAKSYIDEGLKKGLWIVLQNCHVAKSWMKELERICAEVIVPANTHQEFRLWLTSYPSTTFPVSVLENGIKMIIEPPKGIKNNLLRSYTNDPINSDDFYNDSKNVAAWHKLLFSLCLFHAVVQERKQYGPLGWNIPYEFNLSDLNISMKQLQMFLNDYTTIPFDALIYLTVDYKYTSQMRQKNPFTLTISRTTQIIEDFMLCIKKGLWIVLQNCHVAKSWMKELERICAEVIVPANTHQEFRLWLTSYPSTTFPVSVLENGIKMIIEPPKGIKNNLFRSYTNDPINSDDFYNDSKNVAAWHKLLFSLCLFHAVVQERKQYGPLGWNIPYEFNLSDLNISMKQLQMFLNDYTTIPFDALIYLTASIPFQVLAMEVYDRVIKIVGPKKAKLAEAEADYAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQKLERAEKLIGGLGGEKTRWSEASANLSKALVNCIGDILICAGIITYLGAFTVDFRNDLIEQWKSLSSQEQMPFTLSFSMITTLGDAVKIRSWNINGLPVDNFSIENGIILFNSNKWPLLIDPQGQANKWLKNVEKGNLSVVKLTDATLLRTLERAIRTGTAVLLENIQETIDSSLEPVLLKSYYKIQNQLIMTLNNKEIEYNIKFRLYITTRLKNPHYIPEILTKITLINFMITPQGLQNQLLGIVVAKEKPDLETKKNELIIESANNKKILKETEDKILEVLSSSQGNILEDESAVQILTSSKVLSAEITAKQEISSRTEKEIDDARMMYIPVSKHSSVLFFCCAELSNIDPMYQYSLNWFINLYVQSIEGSEKTDQLDKRLKILMNHFTYSIYKNICRSLFEDHKLVFSFVLCTGIQRSNETLDETLFKYFLTGSIDLTMDSPNPSPSWLSNKTWTDIIQISKLPQLGDLKASVKTKNSEWKSYYDSKTPEKERVSYVQDKSDICVLNILKIIRPDKVIQGIQIYVSKNLGEQYIVSPPFSLKQSYDDSNCCTPLIFILSAGSDPMDLLLKFNSDMNAAKPLTVSLGQGIQSYIQSLPLNNTPEIFGLHENADLTKNFNETRLVLGNILLCAQ************EAKNVRIIDELLGKFPEQFDEEAAGRKYPILYNQSMNTVLKQELIRYNRLTVIIKKSLQEVRQAVKGLIVMSKELEEINTSIMFGKIPQAWASKSYPSLKPLGSYIVDLLARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKK**********************

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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MKMWKNKKTERKERDLNASPLVYDEIDNLDLLTEKINQYIVDYNTQNSNKPIDIVTFLYIIQHISRLCRILQQPKGHAMLITIGGSGAAEVTKLATFMNEYVLFEIEILKTYGLTDWRDDLCRLMKKSGGKDAKPMTFLFSDTQIQNEVFVEHINMLLNTARKRYNMDLTKSYGVCPSMSIVHHLEDLNASPLVYDEIDNLDLLTEKINQYIVDYNTQNSNKPIDIVTFLYIIQHISRLCRILQQPKGHAMLITIGTYRVERKIALGRVHIIRTEKEIDDARMMYIPVSKHSSVLFFCCAELSNIDPMYQYSLNWFINLYVQSIEGSEKTDQLDKRLKILMNHFTYSIYKNICRSLFEDHKLVFSFVLCTGQGEIAKSYIDEGLKKGLWIVLQNCHVAKSWMKELERICAEVIVPANTHQEFRLWLTSYPSTTFPVSVLENGIKMIIEPPKGIKNNLLRSYTNDPINSDDFYNDSKNVAAWHKLLFSLCLFHAVVQERKQYGPLGWNIPYEFNLSDLNISMKQLQMFLNDYTTIPFDALIYLTVDYKYTSQMRQKNPFTLTISRTTQIIEDFMLCIKKGLWIVLQNCHVAKSWMKELERICAEVIVPANTHQEFRLWLTSYPSTTFPVSVLENGIKMIIEPPKGIKNNLFRSYTNDPINSDDFYNDSKNVAAWHKLLFSLCLFHAVVQERKQYGPLGWNIPYEFNLSDLNISMKQLQMFLNDYTTIPFDALIYLTASIPFQVLAMEVYDRVIKIVGPKKAKxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxIGGLGGEKTRWSEASANLSKALVNCIGDILICAGIITYLGAFTVDFRNDLIEQWKSLSSQEQMPFTLSFSMITTLGDAVKIRSWNINGLPVDNFSIENGIILFNSNKWPLLIDPQGQANKWLKNVEKGNLSVVKLTDATLLRTLERAIRTGTAVLLENIQETIDSSLEPVLLKSYYKIQNQLIMTLNNKEIEYNIKFRLYITTRLKNPHYIPEILTKITLINFMITPQGLQNQLLGIVVAKEKPDLETKKNELIIESANNKKILKETEDKILEVLSSSQGNILEDESAVQILTSSKVLSAEITAKQEISSRTEKEIDDARMMYIPVSKHSSVLFFCCAELSNIDPMYQYSLNWFINLYVQSIEGSEKTDQLDKRLKILMNHFTYSIYKNICRSLFEDHKLVFSFVLCTGIQRSNETLDETLFKYFLTGSIDLTMDSPNPSPSWLSNKTWTDIIQISKLPQLGDLKASVKTKNSEWKSYYDSKTPEKERVSYVQDKSDICVLNILKIIRPDKVIQGIQIYVSKNLGEQYIVSPPFSLKQSYDDSNCCTPLIFILSAGSDPMDLLLKFNSDMNAAKPLTVSLGQGIQSYIQSLPLNNTPEIFGLHENADLTKNFNETRLVLGNILLCAQQGSTPGAQPGDAEAKNVRIIDELLGKFPEQFDEEAAGRKYPILYNQSMNTVLKQELIRYNRLTVIIKKSLQEVRQAVKGLIVMSKELEEINTSIMFGKIPQAWASKSYPSLKPLGSYIVDLLARREGRGExxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGGGGGEKELVQKN

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		1650	2.2.26 [Sep-21-2011]
Q8TD57		4116	Dynein heavy chain 3, axo	yes	N/A	0.410	0.164	0.525	0.0
Q8BW94		4083	Dynein heavy chain 3, axo	no	N/A	0.401	0.162	0.534	0.0
Q63170		4057	Dynein heavy chain 7, axo	no	N/A	0.402	0.163	0.511	0.0
Q8WXX0		4024	Dynein heavy chain 7, axo	no	N/A	0.402	0.165	0.505	0.0
Q63164		4516	Dynein heavy chain 1, axo	no	N/A	0.403	0.147	0.431	1e-158
Q9P2D7		4330	Dynein heavy chain 1, axo	no	N/A	0.353	0.134	0.460	1e-151
Q9C0G6		4158	Dynein heavy chain 6, axo	no	N/A	0.42	0.166	0.382	1e-142
Q9MBF8		4513	Dynein-1-beta heavy chain	N/A	N/A	0.403	0.147	0.388	1e-141
Q9P225		4427	Dynein heavy chain 2, axo	no	N/A	0.406	0.151	0.389	1e-140
P0C6F1		4456	Dynein heavy chain 2, axo	no	N/A	0.406	0.150	0.391	1e-140

>sp\|Q8TD57\|DYH3_HUMAN Dynein heavy chain 3, axonemal OS=Homo sapiens GN=DNAH3 PE=2 SV=1	Back alignment and function desciption

 Score =  712 bits (1838), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/683 (52%), Positives = 490/683 (71%), Gaps = 5/683 (0%)

Query: 742  VLAMEVYDRVIKIVGPKKAKLAEAEADYAVQMEKLNSKRAQLATVLGKLQALRDELAQKS 801
            V AMEVYDRV K+V PK+ +L EAE   A QM+KLN KRA+L  V+ +LQAL D+  + +
Sbjct: 2888 VRAMEVYDRVAKVVAPKRERLREAEGKLAAQMQKLNQKRAELKLVVDRLQALNDDFEEMN 2947

Query: 802  KDKKELEDQIELCKQKLERAEKLIGGLGGEKTRWSEASANLSKALVNCIGDILICAGIIT 861
              KK+LE+ IE+C QKL RAEKLI GLGGEK RW+EA+  L     N  GD+L+ +G + 
Sbjct: 2948 TKKKDLEENIEICSQKLVRAEKLISGLGGEKDRWTEAARQLGIRYTNLTGDVLLSSGTVA 3007

Query: 862  YLGAFTVDFRNDLIEQWKSLSSQEQMPFTLSFSMITTLGDAVKIRSWNINGLPVDNFSIE 921
            YLGAFTVD+R     QW +    + +P    FS+  TLGD +KIR+W I GLPVD+FSI+
Sbjct: 3008 YLGAFTVDYRVQCQNQWLAECKDKVIPGFSDFSLSHTLGDPIKIRAWQIAGLPVDSFSID 3067

Query: 922  NGIILFNSNKWPLLIDPQGQANKWLKNVEKGN-LSVVKLTDATLLRTLERAIRTGTAVLL 980
            NGII+ NS +W L+IDP GQANKW+KN+EK N L+V+K +D+  +R LE A++ GT VL+
Sbjct: 3068 NGIIVSNSRRWALMIDPHGQANKWIKNMEKANKLAVIKFSDSNYMRMLENALQLGTPVLI 3127

Query: 981  ENIQETIDSSLEPVLLKSYYKIQNQLIMTLNNKEIEYNIKFRLYITTRLKNPHYIPEILT 1040
            ENI E +D+S+EP+LLK+ +K Q    M L    IEY+  F+LYITTRL+NPHY+PE+  
Sbjct: 3128 ENIGEELDASIEPILLKATFKQQGVEYMRLGENIIEYSRDFKLYITTRLRNPHYLPEVAV 3187

Query: 1041 KITLINFMITPQGLQNQLLGIVVAKEKPDLETKKNELIIESANNKKILKETEDKILEVLS 1100
            K+ L+NFMITP GLQ+QLLGIV AKEKP+LE KKN+LI+ESA NKK LKE EDKILEVLS
Sbjct: 3188 KVCLLNFMITPLGLQDQLLGIVAAKEKPELEEKKNQLIVESAKNKKHLKEIEDKILEVLS 3247

Query: 1101 SSQGNILEDESAVQILTSSKVLSAEITAKQEISSRTEKEIDDARMMYIPVSKHSSVLFFC 1160
             S+GNILEDE+A+++L+SSKVLS EI+ KQ+++S TE +ID+ RM Y PV+ HS+ +FFC
Sbjct: 3248 MSKGNILEDETAIKVLSSSKVLSEEISEKQKVASMTETQIDETRMGYKPVAVHSATIFFC 3307

Query: 1161 CAELSNIDPMYQYSLNWFINLYVQSIEGSEKTDQLDKRLKILMNHFTYSIYKNICRSLFE 1220
             ++L+NI+PMYQYSL WFINLY+ S+  S K+++L+ R+K +++HFT SIY N+CRSLFE
Sbjct: 3308 ISDLANIEPMYQYSLTWFINLYMHSLTHSTKSEELNLRIKYIIDHFTLSIYNNVCRSLFE 3367

Query: 1221 DHKLVFSFVLCTGIQRSNETLDETLFKYFLTGSIDLTMDSPNPSPSWLSNKTWTDIIQIS 1280
              KL+FS +L  GI +  + + E ++ + LTG I L    PNP+P WLS K W +I++ S
Sbjct: 3368 KDKLLFSLLLTIGIMKQKKEITEEVWYFLLTGGIALDNPYPNPAPQWLSEKAWAEIVRAS 3427

Query: 1281 KLPQLGDLKASVKTKNSEWKSYYDSKTPEKERVSYVQDKSD-ICVLNILKIIRPDKVIQG 1339
             LP+L  L   ++    EWK  YDS  P +E++      S  +  + IL+ +RPDK++  
Sbjct: 3428 ALPKLHGLMEHLEQNLGEWKLIYDSAWPHEEQLPGSWKFSQGLEKMVILRCLRPDKMVPA 3487

Query: 1340 IQIYVSKNLGEQYIVSPPFSLKQSYDDSNCCTPLIFILSAGSDPMDLLLKFNSD--MNAA 1397
            ++ ++++++G+ YI +P F L+ SY+DS+CC PLIF+LS  +DPM  LLKF  D  M   
Sbjct: 3488 VREFIAEHMGKLYIEAPTFDLQGSYNDSSCCAPLIFVLSPSADPMAGLLKFADDLGMGGT 3547

Query: 1398 KPLTVSLGQGIQSYIQSLPLNNT 1420
            +  T+SLGQG Q  I +  +NN 
Sbjct: 3548 RTQTISLGQG-QGPIAAKMINNA 3569

Force generating protein of respiratory cilia. Produces force towards the minus ends of microtubules. Dynein has ATPase activity; the force-producing power stroke is thought to occur on release of ADP. Involved in sperm motility; implicated in sperm flagellar assembly.
Homo sapiens (taxid: 9606)

>sp\|Q8BW94\|DYH3_MOUSE Dynein heavy chain 3, axonemal OS=Mus musculus GN=Dnah3 PE=1 SV=2	Back alignment and function description

>sp\|Q63170\|DYH7_RAT Dynein heavy chain 7, axonemal OS=Rattus norvegicus GN=Dnah7 PE=2 SV=2	Back alignment and function description

>sp\|Q8WXX0\|DYH7_HUMAN Dynein heavy chain 7, axonemal OS=Homo sapiens GN=DNAH7 PE=1 SV=2	Back alignment and function description

>sp\|Q63164\|DYH1_RAT Dynein heavy chain 1, axonemal OS=Rattus norvegicus GN=Dnah1 PE=2 SV=2	Back alignment and function description

>sp\|Q9P2D7\|DYH1_HUMAN Dynein heavy chain 1, axonemal OS=Homo sapiens GN=DNAH1 PE=2 SV=4	Back alignment and function description

>sp\|Q9C0G6\|DYH6_HUMAN Dynein heavy chain 6, axonemal OS=Homo sapiens GN=DNAH6 PE=1 SV=3	Back alignment and function description

>sp\|Q9MBF8\|DYH1B_CHLRE Dynein-1-beta heavy chain, flagellar inner arm I1 complex OS=Chlamydomonas reinhardtii GN=DHC10 PE=1 SV=1	Back alignment and function description

>sp\|Q9P225\|DYH2_HUMAN Dynein heavy chain 2, axonemal OS=Homo sapiens GN=DNAH2 PE=2 SV=3	Back alignment and function description

>sp\|P0C6F1\|DYH2_MOUSE Dynein heavy chain 2, axonemal OS=Mus musculus GN=Dnah2 PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1650
301604760		3815	PREDICTED: LOW QUALITY PROTEIN: dynein h	0.503	0.217	0.513	0.0
340385138		1055	PREDICTED: dynein heavy chain 3, axonema	0.498	0.779	0.514	0.0
328716380		4071	PREDICTED: dynein heavy chain 3, axonema	0.403	0.163	0.571	0.0
270011462		4101	hypothetical protein TcasGA2_TC005485 [T	0.403	0.162	0.573	0.0
91089257		4068	PREDICTED: similar to predicted protein	0.403	0.163	0.573	0.0
307211150		4021	Dynein heavy chain 3, axonemal [Harpegna	0.403	0.165	0.563	0.0
242009351		4089	dynein beta chain, ciliary, putative [Pe	0.403	0.162	0.581	0.0
322801678		4044	hypothetical protein SINV_08591 [Solenop	0.403	0.164	0.563	0.0
256052216		3853	dynein heavy chain [Schistosoma mansoni]	0.421	0.180	0.535	0.0
350644276		3851	dynein heavy chain, putative [Schistosom	0.421	0.180	0.535	0.0

>gi\|301604760\|ref\|XP_002932028.1\| PREDICTED: LOW QUALITY PROTEIN: dynein heavy chain 3, axonemal-like [Xenopus (Silurana) tropicalis]	Back alignment and taxonomy information

 Score =  864 bits (2233), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 446/869 (51%), Positives = 609/869 (70%), Gaps = 39/869 (4%)

Query: 742  VLAMEVYDRVIKIVGPKKAKLAEAEADYAVQMEKLNSKRAQLATVLGKLQALRDELAQKS 801
            V AMEVYDRV K+V PK+ +L EAE    +QM++LN+KRA+L  V  +LQAL DEL+  +
Sbjct: 2783 VRAMEVYDRVAKVVAPKRERLKEAEGKLFIQMQQLNTKRAELKAVEDRLQALNDELSDMN 2842

Query: 802  KDKKELEDQIELCKQKLERAEKLIGGLGGEKTRWSEASANLSKALVNCIGDILICAGIIT 861
              K ELE+ IELC QKL RAEKLI GLGGEK RW+EA+  L     N  GD+L+ +G + 
Sbjct: 2843 NKKMELENNIELCSQKLVRAEKLISGLGGEKDRWTEAARLLGIRYNNLTGDVLLSSGTVA 2902

Query: 862  YLGAFTVDFRNDLIEQWKSLSSQEQMPFTLSFSMITTLGDAVKIRSWNINGLPVDNFSIE 921
            YLGAFTVD+R++   QW+ L  ++++P +  FS+ +TLGD VK+R+W I GLPVD+FS++
Sbjct: 2903 YLGAFTVDYRHECQNQWQILCKEKKIPCSDDFSLSSTLGDPVKVRAWQIAGLPVDSFSVD 2962

Query: 922  NGIILFNSNKWPLLIDPQGQANKWLKNVEKGN-LSVVKLTDATLLRTLERAIRTGTAVLL 980
            NGII+ NS ++PL+IDPQGQANKW+KN+EK N L V+KL+DA+  RTLE AI+ G  VLL
Sbjct: 2963 NGIIVSNSRRFPLMIDPQGQANKWIKNMEKANKLFVIKLSDASYTRTLENAIQFGNPVLL 3022

Query: 981  ENIQETIDSSLEPVLLKSYYKIQNQLIMTLNNKEIEYNIKFRLYITTRLKNPHYIPEILT 1040
            EN+ E ID+ LEP+LLK  +K Q    + L    IEY+  FRLY+TTRL+NPHY+PE+  
Sbjct: 3023 ENLGEEIDAVLEPLLLKQTFKQQGVEYIRLGENIIEYSKDFRLYMTTRLRNPHYLPEVAV 3082

Query: 1041 KITLINFMITPQGLQNQLLGIVVAKEKPDLETKKNELIIESANNKKILKETEDKILEVLS 1100
            K+ L+NFMITP GLQ+QLLGIV AKEKP+LE KKN+LI+ESA NKK LKE EDKILEVLS
Sbjct: 3083 KVCLLNFMITPLGLQDQLLGIVAAKEKPELEEKKNQLIVESAANKKQLKEIEDKILEVLS 3142

Query: 1101 SSQGNILEDESAVQILTSSKVLSAEITAKQEISSRTEKEIDDARMMYIPVSKHSSVLFFC 1160
            SSQGNILEDE+A+++L+SSK+LS EI+ KQ+I+S TEKEID  RM Y PV+ HSS++FFC
Sbjct: 3143 SSQGNILEDETAIKVLSSSKLLSEEISEKQQIASATEKEIDSTRMGYKPVAVHSSIIFFC 3202

Query: 1161 CAELSNIDPMYQYSLNWFINLYVQSIEGSEKTDQLDKRLKILMNHFTYSIYKNICRSLFE 1220
             ++L+NI+PMYQYSL WFINLY+ S+  SEK++ L +R++ ++ HFT SIY N+CRSLFE
Sbjct: 3203 ISDLANIEPMYQYSLTWFINLYIHSLAHSEKSENLHERIENIIGHFTISIYNNVCRSLFE 3262

Query: 1221 DHKLVFSFVLCTGIQRSNETLDETLFKYFLTGSIDLTMDSPNPSPSWLSNKTWTDIIQIS 1280
              KL+FS +L  GI +  + +++ ++++ LTG + L    PNP+  WLS+K+W +I++ S
Sbjct: 3263 KDKLLFSLLLTIGIMKGEDKINDDVWRFLLTGGVALDNPYPNPASLWLSDKSWAEIVRAS 3322

Query: 1281 KLPQLGDLKASVKTKNSEWKSYYDSKTPEKERV-SYVQDKSDICVLNILKIIRPDKVIQG 1339
             L  L      VK   S+WK+ YDS  P+ E++    Q+ + I  L +L+ +RPDK++  
Sbjct: 3323 NLEPLSGFMNHVKDNISKWKTIYDSLKPQDEKLPDKWQELNGINRLVVLRCLRPDKMVPA 3382

Query: 1340 IQIYVSKNLGEQYIVSPPFSLKQSYDDSNCCTPLIFILSAGSDPMD-------------- 1385
            +Q ++S+N+G+++I  P F L  SY+DSNCC PLIF+LS G+DPM               
Sbjct: 3383 VQEFISENMGKKFIEPPTFDLAGSYNDSNCCAPLIFVLSPGADPMAGECNYGGRVTDDKD 3442

Query: 1386 -------LLLKFNSDMNAAKPLTVSLG-----------QGIQSYIQSLPLNNTPEIFGLH 1427
                   L + +N D+   K   +S G           Q    YI+SLPL   PE+FGLH
Sbjct: 3443 RRLLLCLLSIVYNKDIQQDK-YRLSTGDTYCVPSYGTYQSCVDYIRSLPLITHPEVFGLH 3501

Query: 1428 ENADLTKNFNET-RLVLGNILLCAQQGSTPGAQPGDAEAKNVRIIDELLGKFPEQFDEEA 1486
            ENAD+TK+  ET +L  G +L   +Q S  G  P +       +  ++L K P+ F+ E 
Sbjct: 3502 ENADITKDNQETNQLFSGVLLTLPRQTSGSGRSPQEIVED---LAKDILNKLPKDFNLEK 3558

Query: 1487 AGRKYPILYNQSMNTVLKQELIRYNRLTVIIKKSLQEVRQAVKGLIVMSKELEEINTSIM 1546
               KYP++Y +SMNTVL+QELIR+NRLT +++ SL  + +A+KG ++MS ELE +  S++
Sbjct: 3559 VMEKYPVVYEESMNTVLRQELIRFNRLTAVVRSSLINLGKAIKGQVLMSAELENVFNSML 3618

Query: 1547 FGKIPQAWASKSYPSLKPLGSYIVDLLAR 1575
             GK+P  WASKSYPSLKPLGSY+ DLL+R
Sbjct: 3619 VGKVPSMWASKSYPSLKPLGSYVADLLSR 3647

Source: Xenopus (Silurana) tropicalis

Species: Xenopus (Silurana) tropicalis

Genus: Xenopus

Family: Pipidae

Order: Anura

Class: Amphibia

Phylum: Chordata

Superkingdom: Eukaryota

>gi\|340385138\|ref\|XP_003391067.1\| PREDICTED: dynein heavy chain 3, axonemal-like, partial [Amphimedon queenslandica]	Back alignment and taxonomy information

>gi\|328716380\|ref\|XP_001944438.2\| PREDICTED: dynein heavy chain 3, axonemal-like [Acyrthosiphon pisum]	Back alignment and taxonomy information

>gi\|270011462\|gb\|EFA07910.1\| hypothetical protein TcasGA2_TC005485 [Tribolium castaneum]	Back alignment and taxonomy information

>gi\|91089257\|ref\|XP_969422.1\| PREDICTED: similar to predicted protein [Tribolium castaneum]	Back alignment and taxonomy information

>gi\|307211150\|gb\|EFN87368.1\| Dynein heavy chain 3, axonemal [Harpegnathos saltator]	Back alignment and taxonomy information

>gi\|242009351\|ref\|XP_002425451.1\| dynein beta chain, ciliary, putative [Pediculus humanus corporis] gi\|212509287\|gb\|EEB12713.1\| dynein beta chain, ciliary, putative [Pediculus humanus corporis]	Back alignment and taxonomy information

>gi\|322801678\|gb\|EFZ22301.1\| hypothetical protein SINV_08591 [Solenopsis invicta]	Back alignment and taxonomy information

>gi\|256052216\|ref\|XP_002569671.1\| dynein heavy chain [Schistosoma mansoni]	Back alignment and taxonomy information

>gi\|350644276\|emb\|CCD60974.1\| dynein heavy chain, putative [Schistosoma mansoni]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1650
UNIPROTKB\|J9NT00		4071	DNAH3 "Uncharacterized protein	0.409	0.165	0.533	1.3e-265
UNIPROTKB\|F1PBB5		4075	DNAH3 "Uncharacterized protein	0.409	0.165	0.533	1.3e-265
UNIPROTKB\|J9NWH9		4081	DNAH3 "Uncharacterized protein	0.409	0.165	0.533	1.3e-265
UNIPROTKB\|F1NNT1		3863	DNAH3 "Uncharacterized protein	0.403	0.172	0.540	4e-265
UNIPROTKB\|F1NZ92		4073	DNAH3 "Uncharacterized protein	0.403	0.163	0.540	6.1e-265
MGI\|MGI:2683040		4083	Dnahc3 "dynein, axonemal, heav	0.401	0.162	0.534	1.7e-264
UNIPROTKB\|Q8TD57		4116	DNAH3 "Dynein heavy chain 3, a	0.410	0.164	0.526	1.6e-263
UNIPROTKB\|F1MRU4		4079	DNAH3 "Uncharacterized protein	0.410	0.165	0.533	2.4e-263
ZFIN\|ZDB-GENE-091112-7		3868	si:dkey-161j23.4 "si:dkey-161j	0.395	0.168	0.525	2.7e-257
ZFIN\|ZDB-GENE-090311-9		3841	dnah12 "dynein, axonemal, heav	0.422	0.181	0.508	2.6e-254

UNIPROTKB\|J9NT00 DNAH3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

 Score = 1882 (667.6 bits), Expect = 1.3e-265, Sum P(3) = 1.3e-265
 Identities = 364/682 (53%), Positives = 494/682 (72%)

Query:   742 VLAMEVYDRVIKIVGPKKAKLAEAEADYAVQMEKLNSKRAQLATVLGKLQALRDELAQKS 801
             V AMEVYDRV K+V PK+ +L EAE    +QM+KLN KRA+L  V  +LQAL D+  + +
Sbjct:  2843 VRAMEVYDRVAKVVAPKRERLREAEGKLDIQMQKLNQKRAELKLVEDRLQALNDDFEEMN 2902

Query:   802 KDKKELEDQIELCKQKLERAEKLIGGLGGEKTRWSEASANLSKALVNCIGDILICAGIIT 861
               KK LE+ IE+C QKL RAEKLI GLGGEK RW+EA+  L     N  GD+L+ +G + 
Sbjct:  2903 TKKKTLEENIEICSQKLIRAEKLISGLGGEKDRWTEAARQLGIRYTNLTGDVLLSSGTVA 2962

Query:   862 YLGAFTVDFRNDLIEQWKSLSSQEQMPFTLSFSMITTLGDAVKIRSWNINGLPVDNFSIE 921
             YLGAFTVD+R    +QW +    + +P +  FS+  TLGD VKIR+W I GLP+D+FSI+
Sbjct:  2963 YLGAFTVDYRARCQKQWLAQCKDKVIPSSSDFSLSNTLGDPVKIRAWQIAGLPIDSFSID 3022

Query:   922 NGIILFNSNKWPLLIDPQGQANKWLKNVEKGN-LSVVKLTDATLLRTLERAIRTGTAVLL 980
             NGII+ NS +W L+IDPQGQANKW+KN+EK N LS++K +DA  +RTLE A++ GT VLL
Sbjct:  3023 NGIIVTNSRRWALMIDPQGQANKWIKNMEKANKLSIIKFSDANYVRTLENALQFGTPVLL 3082

Query:   981 ENIQETIDSSLEPVLLKSYYKIQNQLIMTLNNKEIEYNIKFRLYITTRLKNPHYIPEILT 1040
             EN+ E +D+ +EP+LLKS ++ Q    M L    IEY+  F+LYITTRL+NPHY+PE+  
Sbjct:  3083 ENVGEELDAFIEPILLKSTFRQQGVEYMRLGENIIEYSRDFKLYITTRLRNPHYLPEVAV 3142

Query:  1041 KITLINFMITPQGLQNQLLGIVVAKEKPDLETKKNELIIESANNKKILKETEDKILEVLS 1100
             K+ L+NFMITP GLQ+QLLGIV AKEKP+LE KKNELI+ESA NKK LKE EDKILEVLS
Sbjct:  3143 KVCLLNFMITPFGLQDQLLGIVAAKEKPELEEKKNELIVESARNKKQLKEIEDKILEVLS 3202

Query:  1101 SSQGNILEDESAVQILTSSKVLSAEITAKQEISSRTEKEIDDARMMYIPVSKHSSVLFFC 1160
              S+GNILEDE+A+++L+SSK+LS EI+ KQEI+S TE +ID+ RM Y PV+ HS+ +FFC
Sbjct:  3203 LSEGNILEDETAIKVLSSSKILSEEISEKQEIASVTETQIDETRMGYKPVAVHSATIFFC 3262

Query:  1161 CAELSNIDPMYQYSLNWFINLYVQSIEGSEKTDQLDKRLKILMNHFTYSIYKNICRSLFE 1220
              ++L+NI+PMYQYSL WFINLYV S+  S K+++LD R++ ++ HFT SIY N+CRSLFE
Sbjct:  3263 ISDLANIEPMYQYSLTWFINLYVHSLAHSSKSEELDLRIEYIIEHFTLSIYNNVCRSLFE 3322

Query:  1221 DHKLVFSFVLCTGIQRSNETLDETLFKYFLTGSIDLTMDSPNPSPSWLSNKTWTDIIQIS 1280
               KL+FS +L  GI +  + ++E ++ + LTG + L    PNP+P WLS K W ++++ S
Sbjct:  3323 KDKLLFSLLLTIGIMKEKKQINEEVWYFLLTGGVALDNPFPNPAPEWLSEKAWAEVVRAS 3382

Query:  1281 KLPQLGDLKASVKTKNSEWKSYYDSKTPEKERV--SYVQDKSDICVLNILKIIRPDKVIQ 1338
              LP+L  L   ++  + EWK  YDS  P +E+   S+   K  +  + +L+ +RPDK+I 
Sbjct:  3383 ALPKLKGLMEHLEQNSEEWKLIYDSTWPHEEKFPGSWKFLKG-LERMVVLRCLRPDKIIP 3441

Query:  1339 GIQIYVSKNLGEQYIVSPPFSLKQSYDDSNCCTPLIFILSAGSDPMDLLLKFNSD--MNA 1396
              I+ ++++++G+ +I +P F L+ SY+DS+CC PLIF+LS G+DPM  LLKF  D  M  
Sbjct:  3442 AIRDFIAEHMGDVFIEAPTFDLQGSYNDSSCCVPLIFVLSPGADPMAGLLKFADDLGMGG 3501

Query:  1397 AKPLTVSLGQGIQSYIQSLPLN 1418
             AK  T+SLGQG Q  I +  +N
Sbjct:  3502 AKTQTISLGQG-QGSIAAKMIN 3522

GO:0005524 "ATP binding" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0005858 "axonemal dynein complex" evidence=IEA

GO:0003777 "microtubule motor activity" evidence=IEA

GO:0001539 "ciliary or flagellar motility" evidence=IEA

UNIPROTKB\|F1PBB5 DNAH3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|J9NWH9 DNAH3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|F1NNT1 DNAH3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|F1NZ92 DNAH3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

MGI\|MGI:2683040 Dnahc3 "dynein, axonemal, heavy chain 3" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|Q8TD57 DNAH3 "Dynein heavy chain 3, axonemal" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|F1MRU4 DNAH3 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-091112-7 si:dkey-161j23.4 "si:dkey-161j23.4" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-090311-9 dnah12 "dynein, axonemal, heavy chain 12" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8TD57	DYH3_HUMAN	No assigned EC number	0.5256	0.4109	0.1647	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Alignment Graph	Length	Definition	E-value
Query		1650
pfam03028		706	pfam03028, Dynein_heavy, Dynein heavy chain and re	2e-62
pfam03028		706	pfam03028, Dynein_heavy, Dynein heavy chain and re	2e-57
pfam12781		228	pfam12781, AAA_9, ATP-binding dynein motor region	4e-57
pfam03028		706	pfam03028, Dynein_heavy, Dynein heavy chain and re	2e-34
pfam03028		706	pfam03028, Dynein_heavy, Dynein heavy chain and re	7e-29
COG5245		3164	COG5245, DYN1, Dynein, heavy chain [Cytoskeleton]	2e-17
pfam12780		268	pfam12780, AAA_8, P-loop containing dynein motor r	2e-17
pfam12777		344	pfam12777, MT, Microtubule-binding stalk of dynein	1e-14
PRK11192		434	PRK11192, PRK11192, ATP-dependent RNA helicase Srm	2e-13
pfam08208		193	pfam08208, RNA_polI_A34, DNA-directed RNA polymera	7e-13
pfam08208		193	pfam08208, RNA_polI_A34, DNA-directed RNA polymera	1e-10
pfam09428		130	pfam09428, DUF2011, Fungal protein of unknown func	2e-10
pfam04935		206	pfam04935, SURF6, Surfeit locus protein 6	5e-10
pfam09428		130	pfam09428, DUF2011, Fungal protein of unknown func	7e-10
pfam09428		130	pfam09428, DUF2011, Fungal protein of unknown func	2e-09
pfam09428		130	pfam09428, DUF2011, Fungal protein of unknown func	3e-09
PRK14552		414	PRK14552, PRK14552, C/D box methylation guide ribo	3e-09
pfam09428		130	pfam09428, DUF2011, Fungal protein of unknown func	4e-09
pfam10243		506	pfam10243, MIP-T3, Microtubule-binding protein MIP	6e-09
pfam05764		238	pfam05764, YL1, YL1 nuclear protein	7e-09
pfam08432		182	pfam08432, DUF1742, Fungal protein of unknown func	9e-09
PRK04195		482	PRK04195, PRK04195, replication factor C large sub	1e-08
PRK04195		482	PRK04195, PRK04195, replication factor C large sub	1e-08
pfam08432		182	pfam08432, DUF1742, Fungal protein of unknown func	2e-08
PRK04195		482	PRK04195, PRK04195, replication factor C large sub	2e-08
pfam06658		142	pfam06658, DUF1168, Protein of unknown function (D	2e-08
pfam08208		193	pfam08208, RNA_polI_A34, DNA-directed RNA polymera	3e-08
pfam06658		142	pfam06658, DUF1168, Protein of unknown function (D	3e-08
pfam10243		506	pfam10243, MIP-T3, Microtubule-binding protein MIP	5e-08
pfam10243		506	pfam10243, MIP-T3, Microtubule-binding protein MIP	5e-08
pfam05764		238	pfam05764, YL1, YL1 nuclear protein	5e-08
PRK04195		482	PRK04195, PRK04195, replication factor C large sub	5e-08
PRK04195		482	PRK04195, PRK04195, replication factor C large sub	5e-08
pfam06658		142	pfam06658, DUF1168, Protein of unknown function (D	5e-08
pfam05764		238	pfam05764, YL1, YL1 nuclear protein	6e-08
pfam08432		182	pfam08432, DUF1742, Fungal protein of unknown func	7e-08
pfam10243		506	pfam10243, MIP-T3, Microtubule-binding protein MIP	8e-08
pfam04935		206	pfam04935, SURF6, Surfeit locus protein 6	9e-08
PRK11192		434	PRK11192, PRK11192, ATP-dependent RNA helicase Srm	1e-07
pfam08208		193	pfam08208, RNA_polI_A34, DNA-directed RNA polymera	1e-07
PRK14552		414	PRK14552, PRK14552, C/D box methylation guide ribo	1e-07
pfam10243		506	pfam10243, MIP-T3, Microtubule-binding protein MIP	1e-07
PRK13808		333	PRK13808, PRK13808, adenylate kinase; Provisional	1e-07
COG5245		3164	COG5245, DYN1, Dynein, heavy chain [Cytoskeleton]	2e-07
pfam10243		506	pfam10243, MIP-T3, Microtubule-binding protein MIP	2e-07
pfam10243		506	pfam10243, MIP-T3, Microtubule-binding protein MIP	2e-07
pfam10243		506	pfam10243, MIP-T3, Microtubule-binding protein MIP	2e-07
pfam08432		182	pfam08432, DUF1742, Fungal protein of unknown func	2e-07
pfam06658		142	pfam06658, DUF1168, Protein of unknown function (D	2e-07
PRK12280		158	PRK12280, rplW, 50S ribosomal protein L23; Reviewe	2e-07
PTZ00074		135	PTZ00074, PTZ00074, 60S ribosomal protein L34; Pro	2e-07
pfam05764		238	pfam05764, YL1, YL1 nuclear protein	3e-07
pfam05764		238	pfam05764, YL1, YL1 nuclear protein	3e-07
pfam05764		238	pfam05764, YL1, YL1 nuclear protein	3e-07
PRK13808		333	PRK13808, PRK13808, adenylate kinase; Provisional	3e-07
PRK11192		434	PRK11192, PRK11192, ATP-dependent RNA helicase Srm	4e-07
pfam05764		238	pfam05764, YL1, YL1 nuclear protein	4e-07
PTZ00121		2084	PTZ00121, PTZ00121, MAEBL; Provisional	4e-07
pfam06658		142	pfam06658, DUF1168, Protein of unknown function (D	5e-07
PTZ00074		135	PTZ00074, PTZ00074, 60S ribosomal protein L34; Pro	5e-07
PTZ00074		135	PTZ00074, PTZ00074, 60S ribosomal protein L34; Pro	5e-07
PTZ00121		2084	PTZ00121, PTZ00121, MAEBL; Provisional	5e-07
pfam08208		193	pfam08208, RNA_polI_A34, DNA-directed RNA polymera	6e-07
PRK04195		482	PRK04195, PRK04195, replication factor C large sub	6e-07
PRK04195		482	PRK04195, PRK04195, replication factor C large sub	6e-07
PTZ00121		2084	PTZ00121, PTZ00121, MAEBL; Provisional	6e-07
pfam05764		238	pfam05764, YL1, YL1 nuclear protein	7e-07
pfam06658		142	pfam06658, DUF1168, Protein of unknown function (D	7e-07
PRK13808		333	PRK13808, PRK13808, adenylate kinase; Provisional	7e-07
PTZ00121		2084	PTZ00121, PTZ00121, MAEBL; Provisional	7e-07
pfam12569		516	pfam12569, NARP1, NMDA receptor-regulated protein	7e-07
PRK04950		213	PRK04950, PRK04950, ProP expression regulator; Pro	7e-07
PRK04195		482	PRK04195, PRK04195, replication factor C large sub	8e-07
PTZ00074		135	PTZ00074, PTZ00074, 60S ribosomal protein L34; Pro	8e-07
PTZ00121		2084	PTZ00121, PTZ00121, MAEBL; Provisional	8e-07
PRK04950		213	PRK04950, PRK04950, ProP expression regulator; Pro	8e-07
pfam14265		125	pfam14265, DUF4355, Domain of unknown function (DU	8e-07
pfam05764		238	pfam05764, YL1, YL1 nuclear protein	9e-07
PRK13808		333	PRK13808, PRK13808, adenylate kinase; Provisional	9e-07
PRK12280		158	PRK12280, rplW, 50S ribosomal protein L23; Reviewe	9e-07
PTZ00074		135	PTZ00074, PTZ00074, 60S ribosomal protein L34; Pro	9e-07
PTZ00074		135	PTZ00074, PTZ00074, 60S ribosomal protein L34; Pro	9e-07
PTZ00121		2084	PTZ00121, PTZ00121, MAEBL; Provisional	9e-07
pfam08208		193	pfam08208, RNA_polI_A34, DNA-directed RNA polymera	1e-06
pfam10243		506	pfam10243, MIP-T3, Microtubule-binding protein MIP	1e-06
PRK04195		482	PRK04195, PRK04195, replication factor C large sub	1e-06
PRK13808		333	PRK13808, PRK13808, adenylate kinase; Provisional	1e-06
PRK13808		333	PRK13808, PRK13808, adenylate kinase; Provisional	1e-06
PRK13808		333	PRK13808, PRK13808, adenylate kinase; Provisional	1e-06
PTZ00074		135	PTZ00074, PTZ00074, 60S ribosomal protein L34; Pro	1e-06
PTZ00074		135	PTZ00074, PTZ00074, 60S ribosomal protein L34; Pro	1e-06
PTZ00074		135	PTZ00074, PTZ00074, 60S ribosomal protein L34; Pro	1e-06
PTZ00074		135	PTZ00074, PTZ00074, 60S ribosomal protein L34; Pro	1e-06
PTZ00074		135	PTZ00074, PTZ00074, 60S ribosomal protein L34; Pro	1e-06
PTZ00121		2084	PTZ00121, PTZ00121, MAEBL; Provisional	1e-06
PTZ00121		2084	PTZ00121, PTZ00121, MAEBL; Provisional	1e-06
pfam10278		178	pfam10278, Med19, Mediator of RNA pol II transcrip	1e-06
PRK05306		746	PRK05306, infB, translation initiation factor IF-2	1e-06
PRK07561		859	PRK07561, PRK07561, DNA topoisomerase I subunit om	1e-06
pfam08208		193	pfam08208, RNA_polI_A34, DNA-directed RNA polymera	2e-06
pfam04935		206	pfam04935, SURF6, Surfeit locus protein 6	2e-06
pfam10243		506	pfam10243, MIP-T3, Microtubule-binding protein MIP	2e-06
pfam08432		182	pfam08432, DUF1742, Fungal protein of unknown func	2e-06
PRK04195		482	PRK04195, PRK04195, replication factor C large sub	2e-06
PRK13808		333	PRK13808, PRK13808, adenylate kinase; Provisional	2e-06
PRK13808		333	PRK13808, PRK13808, adenylate kinase; Provisional	2e-06
PRK13808		333	PRK13808, PRK13808, adenylate kinase; Provisional	2e-06
PRK13808		333	PRK13808, PRK13808, adenylate kinase; Provisional	2e-06
PRK12280		158	PRK12280, rplW, 50S ribosomal protein L23; Reviewe	2e-06
PTZ00074		135	PTZ00074, PTZ00074, 60S ribosomal protein L34; Pro	2e-06
PTZ00074		135	PTZ00074, PTZ00074, 60S ribosomal protein L34; Pro	2e-06
PTZ00074		135	PTZ00074, PTZ00074, 60S ribosomal protein L34; Pro	2e-06
PTZ00074		135	PTZ00074, PTZ00074, 60S ribosomal protein L34; Pro	2e-06
PRK07561		859	PRK07561, PRK07561, DNA topoisomerase I subunit om	2e-06
pfam08079		71	pfam08079, Ribosomal_L30_N, Ribosomal L30 N-termin	2e-06
TIGR02794		346	TIGR02794, tolA_full, TolA protein	2e-06
pfam06102		168	pfam06102, DUF947, Domain of unknown function (DUF	2e-06
COG5245		3164	COG5245, DYN1, Dynein, heavy chain [Cytoskeleton]	3e-06
pfam08432		182	pfam08432, DUF1742, Fungal protein of unknown func	3e-06
PTZ00121		2084	PTZ00121, PTZ00121, MAEBL; Provisional	3e-06
PTZ00121		2084	PTZ00121, PTZ00121, MAEBL; Provisional	3e-06
PTZ00121		2084	PTZ00121, PTZ00121, MAEBL; Provisional	3e-06
PRK04950		213	PRK04950, PRK04950, ProP expression regulator; Pro	3e-06
TIGR02794		346	TIGR02794, tolA_full, TolA protein	3e-06
pfam10243		506	pfam10243, MIP-T3, Microtubule-binding protein MIP	4e-06
pfam10243		506	pfam10243, MIP-T3, Microtubule-binding protein MIP	4e-06
PRK13808		333	PRK13808, PRK13808, adenylate kinase; Provisional	4e-06
PTZ00121		2084	PTZ00121, PTZ00121, MAEBL; Provisional	4e-06
pfam12569		516	pfam12569, NARP1, NMDA receptor-regulated protein	4e-06
pfam03998		239	pfam03998, Utp11, Utp11 protein	4e-06
pfam11208		132	pfam11208, DUF2992, Protein of unknown function (D	4e-06
pfam10243		506	pfam10243, MIP-T3, Microtubule-binding protein MIP	5e-06
PTZ00121		2084	PTZ00121, PTZ00121, MAEBL; Provisional	5e-06
PRK04950		213	PRK04950, PRK04950, ProP expression regulator; Pro	5e-06
PRK04950		213	PRK04950, PRK04950, ProP expression regulator; Pro	5e-06
PRK07561		859	PRK07561, PRK07561, DNA topoisomerase I subunit om	5e-06
PTZ00121		2084	PTZ00121, PTZ00121, MAEBL; Provisional	6e-06
PTZ00121		2084	PTZ00121, PTZ00121, MAEBL; Provisional	6e-06
pfam08597		242	pfam08597, eIF3_subunit, Translation initiation fa	6e-06
PTZ00372		413	PTZ00372, PTZ00372, endonuclease 4-like protein; P	6e-06
PRK12280		158	PRK12280, rplW, 50S ribosomal protein L23; Reviewe	7e-06
PRK04950		213	PRK04950, PRK04950, ProP expression regulator; Pro	7e-06
PRK07561		859	PRK07561, PRK07561, DNA topoisomerase I subunit om	7e-06
pfam06102		168	pfam06102, DUF947, Domain of unknown function (DUF	7e-06
pfam04641		254	pfam04641, Rtf2, Replication termination factor 2	7e-06
pfam08432		182	pfam08432, DUF1742, Fungal protein of unknown func	8e-06
PTZ00121		2084	PTZ00121, PTZ00121, MAEBL; Provisional	8e-06
pfam12569		516	pfam12569, NARP1, NMDA receptor-regulated protein	8e-06
pfam10278		178	pfam10278, Med19, Mediator of RNA pol II transcrip	8e-06
pfam06102		168	pfam06102, DUF947, Domain of unknown function (DUF	8e-06
PRK04950		213	PRK04950, PRK04950, ProP expression regulator; Pro	9e-06
pfam14265		125	pfam14265, DUF4355, Domain of unknown function (DU	9e-06
pfam14265		125	pfam14265, DUF4355, Domain of unknown function (DU	9e-06
PRK07561		859	PRK07561, PRK07561, DNA topoisomerase I subunit om	9e-06
pfam10243		506	pfam10243, MIP-T3, Microtubule-binding protein MIP	1e-05
PRK13808		333	PRK13808, PRK13808, adenylate kinase; Provisional	1e-05
pfam12569		516	pfam12569, NARP1, NMDA receptor-regulated protein	1e-05
PRK04950		213	PRK04950, PRK04950, ProP expression regulator; Pro	1e-05
PRK04950		213	PRK04950, PRK04950, ProP expression regulator; Pro	1e-05
PRK07561		859	PRK07561, PRK07561, DNA topoisomerase I subunit om	1e-05
PRK07561		859	PRK07561, PRK07561, DNA topoisomerase I subunit om	1e-05
TIGR02794		346	TIGR02794, tolA_full, TolA protein	1e-05
PTZ00372		413	PTZ00372, PTZ00372, endonuclease 4-like protein; P	1e-05
pfam04641		254	pfam04641, Rtf2, Replication termination factor 2	1e-05
pfam10243		506	pfam10243, MIP-T3, Microtubule-binding protein MIP	2e-05
PTZ00121		2084	PTZ00121, PTZ00121, MAEBL; Provisional	2e-05
PTZ00121		2084	PTZ00121, PTZ00121, MAEBL; Provisional	2e-05
pfam14265		125	pfam14265, DUF4355, Domain of unknown function (DU	2e-05
PRK07561		859	PRK07561, PRK07561, DNA topoisomerase I subunit om	2e-05
PRK07561		859	PRK07561, PRK07561, DNA topoisomerase I subunit om	2e-05
TIGR02794		346	TIGR02794, tolA_full, TolA protein	2e-05
TIGR02794		346	TIGR02794, tolA_full, TolA protein	2e-05
TIGR02794		346	TIGR02794, tolA_full, TolA protein	2e-05
PTZ00372		413	PTZ00372, PTZ00372, endonuclease 4-like protein; P	2e-05
PTZ00372		413	PTZ00372, PTZ00372, endonuclease 4-like protein; P	2e-05
pfam08555		90	pfam08555, DUF1754, Eukaryotic family of unknown f	2e-05
pfam08555		90	pfam08555, DUF1754, Eukaryotic family of unknown f	2e-05
COG0810		244	COG0810, TonB, Periplasmic protein TonB, links inn	2e-05
COG1498		395	COG1498, SIK1, Protein implicated in ribosomal bio	2e-05
pfam14265		125	pfam14265, DUF4355, Domain of unknown function (DU	3e-05
PRK07561		859	PRK07561, PRK07561, DNA topoisomerase I subunit om	3e-05
PRK07561		859	PRK07561, PRK07561, DNA topoisomerase I subunit om	3e-05
PTZ00372		413	PTZ00372, PTZ00372, endonuclease 4-like protein; P	3e-05
pfam04641		254	pfam04641, Rtf2, Replication termination factor 2	3e-05
pfam04641		254	pfam04641, Rtf2, Replication termination factor 2	3e-05
pfam08555		90	pfam08555, DUF1754, Eukaryotic family of unknown f	3e-05
pfam08555		90	pfam08555, DUF1754, Eukaryotic family of unknown f	3e-05
COG0810		244	COG0810, TonB, Periplasmic protein TonB, links inn	3e-05
PRK11642		813	PRK11642, PRK11642, exoribonuclease R; Provisional	3e-05
PRK05901		509	PRK05901, PRK05901, RNA polymerase sigma factor; P	3e-05
PRK05901		509	PRK05901, PRK05901, RNA polymerase sigma factor; P	3e-05
COG5245		3164	COG5245, DYN1, Dynein, heavy chain [Cytoskeleton]	4e-05
PTZ00121		2084	PTZ00121, PTZ00121, MAEBL; Provisional	4e-05
PTZ00121		2084	PTZ00121, PTZ00121, MAEBL; Provisional	4e-05
PTZ00121		2084	PTZ00121, PTZ00121, MAEBL; Provisional	4e-05
pfam14265		125	pfam14265, DUF4355, Domain of unknown function (DU	4e-05
PRK07561		859	PRK07561, PRK07561, DNA topoisomerase I subunit om	4e-05
pfam08079		71	pfam08079, Ribosomal_L30_N, Ribosomal L30 N-termin	4e-05
PTZ00372		413	PTZ00372, PTZ00372, endonuclease 4-like protein; P	4e-05
COG0810		244	COG0810, TonB, Periplasmic protein TonB, links inn	4e-05
COG0810		244	COG0810, TonB, Periplasmic protein TonB, links inn	4e-05
pfam14303		147	pfam14303, NAM-associated, No apical meristem-asso	4e-05
PTZ00069		300	PTZ00069, PTZ00069, 60S ribosomal protein L5; Prov	4e-05
pfam04935		206	pfam04935, SURF6, Surfeit locus protein 6	5e-05
PRK04950		213	PRK04950, PRK04950, ProP expression regulator; Pro	5e-05
PRK04950		213	PRK04950, PRK04950, ProP expression regulator; Pro	5e-05
TIGR02794		346	TIGR02794, tolA_full, TolA protein	5e-05
PTZ00372		413	PTZ00372, PTZ00372, endonuclease 4-like protein; P	5e-05
COG0810		244	COG0810, TonB, Periplasmic protein TonB, links inn	5e-05
PRK05901		509	PRK05901, PRK05901, RNA polymerase sigma factor; P	5e-05
PRK04195		482	PRK04195, PRK04195, replication factor C large sub	6e-05
PRK13808		333	PRK13808, PRK13808, adenylate kinase; Provisional	6e-05
pfam14265		125	pfam14265, DUF4355, Domain of unknown function (DU	6e-05
PTZ00372		413	PTZ00372, PTZ00372, endonuclease 4-like protein; P	6e-05
PRK11642		813	PRK11642, PRK11642, exoribonuclease R; Provisional	6e-05
PTZ00069		300	PTZ00069, PTZ00069, 60S ribosomal protein L5; Prov	6e-05
pfam05285		317	pfam05285, SDA1, SDA1	6e-05
PTZ00121		2084	PTZ00121, PTZ00121, MAEBL; Provisional	7e-05
pfam10278		178	pfam10278, Med19, Mediator of RNA pol II transcrip	7e-05
PTZ00372		413	PTZ00372, PTZ00372, endonuclease 4-like protein; P	7e-05
pfam08555		90	pfam08555, DUF1754, Eukaryotic family of unknown f	7e-05
PTZ00069		300	PTZ00069, PTZ00069, 60S ribosomal protein L5; Prov	7e-05
PRK14907		295	PRK14907, rplD, 50S ribosomal protein L4; Provisio	7e-05
pfam09468		287	pfam09468, RNase_H2-Ydr279, Ydr279p protein family	7e-05
pfam08597		242	pfam08597, eIF3_subunit, Translation initiation fa	8e-05
COG0810		244	COG0810, TonB, Periplasmic protein TonB, links inn	8e-05
PTZ00069		300	PTZ00069, PTZ00069, 60S ribosomal protein L5; Prov	8e-05
pfam07432		123	pfam07432, Hc1, Histone H1-like protein Hc1	8e-05
smart00435		391	smart00435, TOPEUc, DNA Topoisomerase I (eukaryota	8e-05
pfam14265		125	pfam14265, DUF4355, Domain of unknown function (DU	9e-05
COG1498		395	COG1498, SIK1, Protein implicated in ribosomal bio	9e-05
PRK05901		509	PRK05901, PRK05901, RNA polymerase sigma factor; P	9e-05
PTZ00069		300	PTZ00069, PTZ00069, 60S ribosomal protein L5; Prov	9e-05
PTZ00069		300	PTZ00069, PTZ00069, 60S ribosomal protein L5; Prov	9e-05
PTZ00121		2084	PTZ00121, PTZ00121, MAEBL; Provisional	1e-04
pfam14265		125	pfam14265, DUF4355, Domain of unknown function (DU	1e-04
pfam14265		125	pfam14265, DUF4355, Domain of unknown function (DU	1e-04
pfam14265		125	pfam14265, DUF4355, Domain of unknown function (DU	1e-04
pfam14265		125	pfam14265, DUF4355, Domain of unknown function (DU	1e-04
pfam10278		178	pfam10278, Med19, Mediator of RNA pol II transcrip	1e-04
pfam08079		71	pfam08079, Ribosomal_L30_N, Ribosomal L30 N-termin	1e-04
TIGR02794		346	TIGR02794, tolA_full, TolA protein	1e-04
TIGR02794		346	TIGR02794, tolA_full, TolA protein	1e-04
TIGR02794		346	TIGR02794, tolA_full, TolA protein	1e-04
pfam08555		90	pfam08555, DUF1754, Eukaryotic family of unknown f	1e-04
PRK11642		813	PRK11642, PRK11642, exoribonuclease R; Provisional	1e-04
PRK05901		509	PRK05901, PRK05901, RNA polymerase sigma factor; P	1e-04
pfam09468		287	pfam09468, RNase_H2-Ydr279, Ydr279p protein family	1e-04
PLN02381		1066	PLN02381, PLN02381, valyl-tRNA synthetase	1e-04
PRK09510		387	PRK09510, tolA, cell envelope integrity inner memb	1e-04
PRK09510		387	PRK09510, tolA, cell envelope integrity inner memb	1e-04
pfam07780		212	pfam07780, Spb1_C, Spb1 C-terminal domain	1e-04
pfam08496		154	pfam08496, Peptidase_S49_N, Peptidase family S49 N	1e-04
pfam08496		154	pfam08496, Peptidase_S49_N, Peptidase family S49 N	1e-04
COG1754		298	COG1754, COG1754, Uncharacterized C-terminal domai	1e-04
pfam08701		80	pfam08701, GN3L_Grn1, GNL3L/Grn1 putative GTPase	1e-04
pfam03343		603	pfam03343, SART-1, SART-1 family	1e-04
pfam04935		206	pfam04935, SURF6, Surfeit locus protein 6	2e-04
pfam10243		506	pfam10243, MIP-T3, Microtubule-binding protein MIP	2e-04
PRK13808		333	PRK13808, PRK13808, adenylate kinase; Provisional	2e-04
PTZ00121		2084	PTZ00121, PTZ00121, MAEBL; Provisional	2e-04
PTZ00121		2084	PTZ00121, PTZ00121, MAEBL; Provisional	2e-04
PTZ00121		2084	PTZ00121, PTZ00121, MAEBL; Provisional	2e-04
PTZ00121		2084	PTZ00121, PTZ00121, MAEBL; Provisional	2e-04
PTZ00121		2084	PTZ00121, PTZ00121, MAEBL; Provisional	2e-04
PTZ00121		2084	PTZ00121, PTZ00121, MAEBL; Provisional	2e-04
PTZ00121		2084	PTZ00121, PTZ00121, MAEBL; Provisional	2e-04
PTZ00121		2084	PTZ00121, PTZ00121, MAEBL; Provisional	2e-04
PTZ00121		2084	PTZ00121, PTZ00121, MAEBL; Provisional	2e-04
PTZ00121		2084	PTZ00121, PTZ00121, MAEBL; Provisional	2e-04
PTZ00121		2084	PTZ00121, PTZ00121, MAEBL; Provisional	2e-04
PTZ00121		2084	PTZ00121, PTZ00121, MAEBL; Provisional	2e-04
PRK04950		213	PRK04950, PRK04950, ProP expression regulator; Pro	2e-04
PRK04950		213	PRK04950, PRK04950, ProP expression regulator; Pro	2e-04
pfam08079		71	pfam08079, Ribosomal_L30_N, Ribosomal L30 N-termin	2e-04
TIGR02794		346	TIGR02794, tolA_full, TolA protein	2e-04
TIGR02794		346	TIGR02794, tolA_full, TolA protein	2e-04
TIGR02794		346	TIGR02794, tolA_full, TolA protein	2e-04
pfam04641		254	pfam04641, Rtf2, Replication termination factor 2	2e-04
pfam08555		90	pfam08555, DUF1754, Eukaryotic family of unknown f	2e-04
COG0810		244	COG0810, TonB, Periplasmic protein TonB, links inn	2e-04
COG0810		244	COG0810, TonB, Periplasmic protein TonB, links inn	2e-04
COG1498		395	COG1498, SIK1, Protein implicated in ribosomal bio	2e-04
PRK11642		813	PRK11642, PRK11642, exoribonuclease R; Provisional	2e-04
PRK11642		813	PRK11642, PRK11642, exoribonuclease R; Provisional	2e-04
PRK11642		813	PRK11642, PRK11642, exoribonuclease R; Provisional	2e-04
PRK14907		295	PRK14907, rplD, 50S ribosomal protein L4; Provisio	2e-04
PRK14907		295	PRK14907, rplD, 50S ribosomal protein L4; Provisio	2e-04
PRK09510		387	PRK09510, tolA, cell envelope integrity inner memb	2e-04
PRK09510		387	PRK09510, tolA, cell envelope integrity inner memb	2e-04
pfam07767		387	pfam07767, Nop53, Nop53 (60S ribosomal biogenesis)	2e-04
pfam08576		98	pfam08576, DUF1764, Eukaryotic protein of unknown	2e-04
COG3064		387	COG3064, TolA, Membrane protein involved in colici	2e-04
pfam10243		506	pfam10243, MIP-T3, Microtubule-binding protein MIP	3e-04
PTZ00121		2084	PTZ00121, PTZ00121, MAEBL; Provisional	3e-04
PTZ00121		2084	PTZ00121, PTZ00121, MAEBL; Provisional	3e-04
PTZ00121		2084	PTZ00121, PTZ00121, MAEBL; Provisional	3e-04
pfam14265		125	pfam14265, DUF4355, Domain of unknown function (DU	3e-04
pfam08079		71	pfam08079, Ribosomal_L30_N, Ribosomal L30 N-termin	3e-04
pfam03998		239	pfam03998, Utp11, Utp11 protein	3e-04
PTZ00372		413	PTZ00372, PTZ00372, endonuclease 4-like protein; P	3e-04
COG0810		244	COG0810, TonB, Periplasmic protein TonB, links inn	3e-04
PRK05901		509	PRK05901, PRK05901, RNA polymerase sigma factor; P	3e-04
PRK14907		295	PRK14907, rplD, 50S ribosomal protein L4; Provisio	3e-04
PRK14907		295	PRK14907, rplD, 50S ribosomal protein L4; Provisio	3e-04
COG3064		387	COG3064, TolA, Membrane protein involved in colici	3e-04
pfam09745		128	pfam09745, DUF2040, Coiled-coil domain-containing	3e-04
pfam07946		322	pfam07946, DUF1682, Protein of unknown function (D	3e-04
pfam05501		122	pfam05501, DUF755, Domain of unknown function (DUF	3e-04
pfam12589		85	pfam12589, WBS_methylT, Methyltransferase involved	3e-04
pfam13904		261	pfam13904, DUF4207, Domain of unknown function (DU	3e-04
PTZ00191		145	PTZ00191, PTZ00191, 60S ribosomal protein L23a; Pr	3e-04
pfam10659		98	pfam10659, Trypan_glycop_C, Trypanosome variant su	3e-04
pfam05890		270	pfam05890, Ebp2, Eukaryotic rRNA processing protei	3e-04
PTZ00053		470	PTZ00053, PTZ00053, methionine aminopeptidase 2; P	3e-04
pfam14181		155	pfam14181, YqfQ, YqfQ-like protein	3e-04
PTZ00121		2084	PTZ00121, PTZ00121, MAEBL; Provisional	4e-04
PTZ00121		2084	PTZ00121, PTZ00121, MAEBL; Provisional	4e-04
PTZ00121		2084	PTZ00121, PTZ00121, MAEBL; Provisional	4e-04
PTZ00121		2084	PTZ00121, PTZ00121, MAEBL; Provisional	4e-04
TIGR02794		346	TIGR02794, tolA_full, TolA protein	4e-04
TIGR02794		346	TIGR02794, tolA_full, TolA protein	4e-04
TIGR02794		346	TIGR02794, tolA_full, TolA protein	4e-04
PTZ00069		300	PTZ00069, PTZ00069, 60S ribosomal protein L5; Prov	4e-04
pfam08496		154	pfam08496, Peptidase_S49_N, Peptidase family S49 N	4e-04
pfam08496		154	pfam08496, Peptidase_S49_N, Peptidase family S49 N	4e-04
pfam08496		154	pfam08496, Peptidase_S49_N, Peptidase family S49 N	4e-04
pfam08701		80	pfam08701, GN3L_Grn1, GNL3L/Grn1 putative GTPase	4e-04
PRK06319		860	PRK06319, PRK06319, DNA topoisomerase I/SWI domain	4e-04
pfam09831		177	pfam09831, DUF2058, Uncharacterized protein conser	4e-04
pfam12687		137	pfam12687, DUF3801, Protein of unknown function (D	4e-04
pfam10243		506	pfam10243, MIP-T3, Microtubule-binding protein MIP	5e-04
pfam05764		238	pfam05764, YL1, YL1 nuclear protein	5e-04
PTZ00121		2084	PTZ00121, PTZ00121, MAEBL; Provisional	5e-04
PTZ00121		2084	PTZ00121, PTZ00121, MAEBL; Provisional	5e-04
PTZ00121		2084	PTZ00121, PTZ00121, MAEBL; Provisional	5e-04
pfam10278		178	pfam10278, Med19, Mediator of RNA pol II transcrip	5e-04
pfam08079		71	pfam08079, Ribosomal_L30_N, Ribosomal L30 N-termin	5e-04
TIGR02794		346	TIGR02794, tolA_full, TolA protein	5e-04
TIGR02794		346	TIGR02794, tolA_full, TolA protein	5e-04
PTZ00372		413	PTZ00372, PTZ00372, endonuclease 4-like protein; P	5e-04
pfam09507		427	pfam09507, CDC27, DNA polymerase subunit Cdc27	5e-04
PTZ00121		2084	PTZ00121, PTZ00121, MAEBL; Provisional	6e-04
PTZ00121		2084	PTZ00121, PTZ00121, MAEBL; Provisional	6e-04
PTZ00121		2084	PTZ00121, PTZ00121, MAEBL; Provisional	6e-04
PTZ00121		2084	PTZ00121, PTZ00121, MAEBL; Provisional	6e-04
pfam09468		287	pfam09468, RNase_H2-Ydr279, Ydr279p protein family	6e-04
pfam09468		287	pfam09468, RNase_H2-Ydr279, Ydr279p protein family	6e-04
pfam08496		154	pfam08496, Peptidase_S49_N, Peptidase family S49 N	6e-04
COG3064		387	COG3064, TolA, Membrane protein involved in colici	6e-04
PTZ00191		145	PTZ00191, PTZ00191, 60S ribosomal protein L23a; Pr	6e-04
pfam10659		98	pfam10659, Trypan_glycop_C, Trypanosome variant su	6e-04
PTZ00108		1388	PTZ00108, PTZ00108, DNA topoisomerase 2-like prote	6e-04
pfam09736		141	pfam09736, Bud13, Pre-mRNA-splicing factor of RES	6e-04
pfam12923		131	pfam12923, RRP7, Ribosomal RNA-processing protein	6e-04
PRK11778		330	PRK11778, PRK11778, putative inner membrane peptid	6e-04
pfam10243		506	pfam10243, MIP-T3, Microtubule-binding protein MIP	7e-04
PTZ00121		2084	PTZ00121, PTZ00121, MAEBL; Provisional	7e-04
PTZ00121		2084	PTZ00121, PTZ00121, MAEBL; Provisional	7e-04
PTZ00121		2084	PTZ00121, PTZ00121, MAEBL; Provisional	7e-04
PTZ00372		413	PTZ00372, PTZ00372, endonuclease 4-like protein; P	7e-04
PTZ00069		300	PTZ00069, PTZ00069, 60S ribosomal protein L5; Prov	7e-04
PRK14907		295	PRK14907, rplD, 50S ribosomal protein L4; Provisio	7e-04
PLN02381		1066	PLN02381, PLN02381, valyl-tRNA synthetase	7e-04
pfam08576		98	pfam08576, DUF1764, Eukaryotic protein of unknown	7e-04
pfam10659		98	pfam10659, Trypan_glycop_C, Trypanosome variant su	7e-04
PTZ00121		2084	PTZ00121, PTZ00121, MAEBL; Provisional	8e-04
PTZ00121		2084	PTZ00121, PTZ00121, MAEBL; Provisional	8e-04
PRK07561		859	PRK07561, PRK07561, DNA topoisomerase I subunit om	8e-04
TIGR02794		346	TIGR02794, tolA_full, TolA protein	8e-04
COG0810		244	COG0810, TonB, Periplasmic protein TonB, links inn	8e-04
PRK05901		509	PRK05901, PRK05901, RNA polymerase sigma factor; P	8e-04
PTZ00069		300	PTZ00069, PTZ00069, 60S ribosomal protein L5; Prov	8e-04
pfam07432		123	pfam07432, Hc1, Histone H1-like protein Hc1	8e-04
pfam08576		98	pfam08576, DUF1764, Eukaryotic protein of unknown	8e-04
COG3064		387	COG3064, TolA, Membrane protein involved in colici	8e-04
PRK06319		860	PRK06319, PRK06319, DNA topoisomerase I/SWI domain	8e-04
pfam12569		516	pfam12569, NARP1, NMDA receptor-regulated protein	9e-04
pfam14181		155	pfam14181, YqfQ, YqfQ-like protein	9e-04
PRK06319		860	PRK06319, PRK06319, DNA topoisomerase I/SWI domain	9e-04
pfam04615		728	pfam04615, Utp14, Utp14 protein	9e-04
PRK14552		414	PRK14552, PRK14552, C/D box methylation guide ribo	0.001
PTZ00074		135	PTZ00074, PTZ00074, 60S ribosomal protein L34; Pro	0.001
pfam14265		125	pfam14265, DUF4355, Domain of unknown function (DU	0.001
TIGR02794		346	TIGR02794, tolA_full, TolA protein	0.001
TIGR02794		346	TIGR02794, tolA_full, TolA protein	0.001
TIGR02794		346	TIGR02794, tolA_full, TolA protein	0.001
TIGR02794		346	TIGR02794, tolA_full, TolA protein	0.001
PTZ00372		413	PTZ00372, PTZ00372, endonuclease 4-like protein; P	0.001
COG0810		244	COG0810, TonB, Periplasmic protein TonB, links inn	0.001
COG0810		244	COG0810, TonB, Periplasmic protein TonB, links inn	0.001
COG0810		244	COG0810, TonB, Periplasmic protein TonB, links inn	0.001
PTZ00069		300	PTZ00069, PTZ00069, 60S ribosomal protein L5; Prov	0.001
pfam09468		287	pfam09468, RNase_H2-Ydr279, Ydr279p protein family	0.001
pfam09468		287	pfam09468, RNase_H2-Ydr279, Ydr279p protein family	0.001
smart00435		391	smart00435, TOPEUc, DNA Topoisomerase I (eukaryota	0.001
PLN02381		1066	PLN02381, PLN02381, valyl-tRNA synthetase	0.001
pfam08496		154	pfam08496, Peptidase_S49_N, Peptidase family S49 N	0.001
pfam05890		270	pfam05890, Ebp2, Eukaryotic rRNA processing protei	0.001
PRK06319		860	PRK06319, PRK06319, DNA topoisomerase I/SWI domain	0.001
pfam04615		728	pfam04615, Utp14, Utp14 protein	0.001
PTZ00217		393	PTZ00217, PTZ00217, flap endonuclease-1; Provision	0.001
PTZ00217		393	PTZ00217, PTZ00217, flap endonuclease-1; Provision	0.001
PRK07219		822	PRK07219, PRK07219, DNA topoisomerase I; Validated	0.001
PRK07219		822	PRK07219, PRK07219, DNA topoisomerase I; Validated	0.001
PRK14900		1052	PRK14900, valS, valyl-tRNA synthetase; Provisional	0.001
PRK05244		177	PRK05244, PRK05244, Der GTPase activator; Provisio	0.001
cd12951		129	cd12951, RRP7_Rrp7A, RRP7 domain ribosomal RNA-pro	0.001
TIGR02168		1179	TIGR02168, SMC_prok_B, chromosome segregation prot	0.001
pfam08524		150	pfam08524, rRNA_processing, rRNA processing	0.001
pfam11861		154	pfam11861, DUF3381, Domain of unknown function (DU	0.001
cd09270		211	cd09270, RNase_H2-B, Ribonuclease H2-B is a subuni	0.001
pfam02349		81	pfam02349, MSG, Major surface glycoprotein	0.001
pfam02349		81	pfam02349, MSG, Major surface glycoprotein	0.001
pfam09368		76	pfam09368, Sas10_Utp3_C, Sas10 C-terminal domain	0.001
pfam10595		349	pfam10595, UPF0564, Uncharacterized protein family	0.001
pfam09135		112	pfam09135, Alb1, Alb1	0.001
pfam09495		82	pfam09495, DUF2462, Protein of unknown function (D	0.001
pfam04086		272	pfam04086, SRP-alpha_N, Signal recognition particl	0.001
pfam04935		206	pfam04935, SURF6, Surfeit locus protein 6	0.002
pfam06658		142	pfam06658, DUF1168, Protein of unknown function (D	0.002
PTZ00074		135	PTZ00074, PTZ00074, 60S ribosomal protein L34; Pro	0.002
PTZ00121		2084	PTZ00121, PTZ00121, MAEBL; Provisional	0.002
PTZ00121		2084	PTZ00121, PTZ00121, MAEBL; Provisional	0.002
PTZ00121		2084	PTZ00121, PTZ00121, MAEBL; Provisional	0.002
PTZ00121		2084	PTZ00121, PTZ00121, MAEBL; Provisional	0.002
PTZ00121		2084	PTZ00121, PTZ00121, MAEBL; Provisional	0.002
pfam12569		516	pfam12569, NARP1, NMDA receptor-regulated protein	0.002
pfam12569		516	pfam12569, NARP1, NMDA receptor-regulated protein	0.002
TIGR02794		346	TIGR02794, tolA_full, TolA protein	0.002
TIGR02794		346	TIGR02794, tolA_full, TolA protein	0.002
TIGR02794		346	TIGR02794, tolA_full, TolA protein	0.002
pfam03998		239	pfam03998, Utp11, Utp11 protein	0.002
PTZ00372		413	PTZ00372, PTZ00372, endonuclease 4-like protein; P	0.002
PRK05901		509	PRK05901, PRK05901, RNA polymerase sigma factor; P	0.002
PTZ00069		300	PTZ00069, PTZ00069, 60S ribosomal protein L5; Prov	0.002
PTZ00069		300	PTZ00069, PTZ00069, 60S ribosomal protein L5; Prov	0.002
pfam09468		287	pfam09468, RNase_H2-Ydr279, Ydr279p protein family	0.002
PLN02381		1066	PLN02381, PLN02381, valyl-tRNA synthetase	0.002
PRK09510		387	PRK09510, tolA, cell envelope integrity inner memb	0.002
pfam07767		387	pfam07767, Nop53, Nop53 (60S ribosomal biogenesis)	0.002
pfam07767		387	pfam07767, Nop53, Nop53 (60S ribosomal biogenesis)	0.002
pfam08576		98	pfam08576, DUF1764, Eukaryotic protein of unknown	0.002
COG3064		387	COG3064, TolA, Membrane protein involved in colici	0.002
COG3064		387	COG3064, TolA, Membrane protein involved in colici	0.002
COG3064		387	COG3064, TolA, Membrane protein involved in colici	0.002
pfam12589		85	pfam12589, WBS_methylT, Methyltransferase involved	0.002
pfam05890		270	pfam05890, Ebp2, Eukaryotic rRNA processing protei	0.002
PRK06319		860	PRK06319, PRK06319, DNA topoisomerase I/SWI domain	0.002
PRK06319		860	PRK06319, PRK06319, DNA topoisomerase I/SWI domain	0.002
PTZ00108		1388	PTZ00108, PTZ00108, DNA topoisomerase 2-like prote	0.002
PTZ00108		1388	PTZ00108, PTZ00108, DNA topoisomerase 2-like prote	0.002
PTZ00108		1388	PTZ00108, PTZ00108, DNA topoisomerase 2-like prote	0.002
PTZ00108		1388	PTZ00108, PTZ00108, DNA topoisomerase 2-like prote	0.002
pfam09736		141	pfam09736, Bud13, Pre-mRNA-splicing factor of RES	0.002
PTZ00217		393	PTZ00217, PTZ00217, flap endonuclease-1; Provision	0.002
pfam03839		217	pfam03839, Sec62, Translocation protein Sec62	0.002
pfam06375		561	pfam06375, BLVR, Bovine leukaemia virus receptor (	0.002
pfam06375		561	pfam06375, BLVR, Bovine leukaemia virus receptor (	0.002
PRK03577		102	PRK03577, PRK03577, acid shock protein precursor;	0.002
pfam06217		301	pfam06217, GAGA_bind, GAGA binding protein-like fa	0.002
PTZ00121		2084	PTZ00121, PTZ00121, MAEBL; Provisional	0.003
PTZ00121		2084	PTZ00121, PTZ00121, MAEBL; Provisional	0.003
PTZ00121		2084	PTZ00121, PTZ00121, MAEBL; Provisional	0.003
PTZ00121		2084	PTZ00121, PTZ00121, MAEBL; Provisional	0.003
PTZ00121		2084	PTZ00121, PTZ00121, MAEBL; Provisional	0.003
TIGR02794		346	TIGR02794, tolA_full, TolA protein	0.003
TIGR02794		346	TIGR02794, tolA_full, TolA protein	0.003
PRK05901		509	PRK05901, PRK05901, RNA polymerase sigma factor; P	0.003
PRK05901		509	PRK05901, PRK05901, RNA polymerase sigma factor; P	0.003
PTZ00069		300	PTZ00069, PTZ00069, 60S ribosomal protein L5; Prov	0.003
PLN02381		1066	PLN02381, PLN02381, valyl-tRNA synthetase	0.003
pfam07780		212	pfam07780, Spb1_C, Spb1 C-terminal domain	0.003
pfam07780		212	pfam07780, Spb1_C, Spb1 C-terminal domain	0.003
pfam08496		154	pfam08496, Peptidase_S49_N, Peptidase family S49 N	0.003
pfam08576		98	pfam08576, DUF1764, Eukaryotic protein of unknown	0.003
COG3064		387	COG3064, TolA, Membrane protein involved in colici	0.003
COG3064		387	COG3064, TolA, Membrane protein involved in colici	0.003
pfam05501		122	pfam05501, DUF755, Domain of unknown function (DUF	0.003
pfam05501		122	pfam05501, DUF755, Domain of unknown function (DUF	0.003
pfam10659		98	pfam10659, Trypan_glycop_C, Trypanosome variant su	0.003
pfam14181		155	pfam14181, YqfQ, YqfQ-like protein	0.003
pfam09507		427	pfam09507, CDC27, DNA polymerase subunit Cdc27	0.003
PTZ00108		1388	PTZ00108, PTZ00108, DNA topoisomerase 2-like prote	0.003
PTZ00108		1388	PTZ00108, PTZ00108, DNA topoisomerase 2-like prote	0.003
PRK11778		330	PRK11778, PRK11778, putative inner membrane peptid	0.003
pfam04615		728	pfam04615, Utp14, Utp14 protein	0.003
pfam11861		154	pfam11861, DUF3381, Domain of unknown function (DU	0.003
pfam07890		132	pfam07890, Rrp15p, Rrp15p	0.003
pfam10169		124	pfam10169, Laps, Learning-associated protein	0.003
PLN02967		581	PLN02967, PLN02967, kinase	0.003
pfam04935		206	pfam04935, SURF6, Surfeit locus protein 6	0.004
pfam10243		506	pfam10243, MIP-T3, Microtubule-binding protein MIP	0.004
PTZ00121		2084	PTZ00121, PTZ00121, MAEBL; Provisional	0.004
PTZ00121		2084	PTZ00121, PTZ00121, MAEBL; Provisional	0.004
PTZ00121		2084	PTZ00121, PTZ00121, MAEBL; Provisional	0.004
PRK07561		859	PRK07561, PRK07561, DNA topoisomerase I subunit om	0.004
pfam04641		254	pfam04641, Rtf2, Replication termination factor 2	0.004
PRK05901		509	PRK05901, PRK05901, RNA polymerase sigma factor; P	0.004
smart00435		391	smart00435, TOPEUc, DNA Topoisomerase I (eukaryota	0.004
smart00435		391	smart00435, TOPEUc, DNA Topoisomerase I (eukaryota	0.004
pfam08576		98	pfam08576, DUF1764, Eukaryotic protein of unknown	0.004
pfam08576		98	pfam08576, DUF1764, Eukaryotic protein of unknown	0.004
pfam05501		122	pfam05501, DUF755, Domain of unknown function (DUF	0.004
pfam05890		270	pfam05890, Ebp2, Eukaryotic rRNA processing protei	0.004
pfam09831		177	pfam09831, DUF2058, Uncharacterized protein conser	0.004
pfam12687		137	pfam12687, DUF3801, Protein of unknown function (D	0.004
PTZ00108		1388	PTZ00108, PTZ00108, DNA topoisomerase 2-like prote	0.004
pfam03839		217	pfam03839, Sec62, Translocation protein Sec62	0.004
pfam13166		713	pfam13166, AAA_13, AAA domain	0.004
pfam11223		49	pfam11223, DUF3020, Protein of unknown function (D	0.004
pfam11223		49	pfam11223, DUF3020, Protein of unknown function (D	0.004
cd12950		128	cd12950, RRP7_Rrp7p, RRP7 domain ribosomal RNA-pro	0.004
pfam09805		134	pfam09805, Nop25, Nucleolar protein 12 (25kDa)	0.004

>gnl\|CDD\|217325 pfam03028, Dynein_heavy, Dynein heavy chain and region D6 of dynein motor	Back alignment and domain information

 Score =  227 bits (580), Expect = 2e-62
 Identities = 77/182 (42%), Positives = 112/182 (61%), Gaps = 7/182 (3%)

Query: 364 FSFVLCTGQGEIAKSYIDEGLKKGLWIVLQNCHVAKSWMKELERICAEVIVPANTHQEFR 423
            S  L  GQG IA+  I+   K G W++LQN H+A SW+  LE+   E + P  +H +FR
Sbjct: 148 HSVSLGQGQGPIAEKAIETAAKSGHWVMLQNIHLAPSWLPTLEKKL-ESLTP-GSHPDFR 205

Query: 424 LWLTSYPSTTFPVSVLENGIKMIIEPPKGIKNNLLRSYTNDPINSDDFYNDSKNVAAWHK 483
           L+LT+ P+ + P+ +L+N IK+  EPP G+K NLLR+ ++      +     K  A + +
Sbjct: 206 LFLTAEPAPSIPIGLLQNSIKITNEPPTGLKANLLRALSSFTQ---ETLEMCKKPAEFKR 262

Query: 484 LLFSLCLFHAVVQERKQYGPLGWNIPYEFNLSDLNISMKQLQMFLNDY--TTIPFDALIY 541
           +LF LC FHAVVQER+++GPLGWN  YEFN  DL IS+  L  +L+      +P++ L Y
Sbjct: 263 ILFLLCFFHAVVQERRKFGPLGWNKSYEFNEGDLRISLDVLDNYLDANAPDKVPWEDLRY 322

Query: 542 LT 543
           L 
Sbjct: 323 LF 324

This family represents the C-terminal region of dynein heavy chain. The chain also contains ATPase activity and microtubule binding ability and acts as a motor for the movement of organelles and vesicles along microtubules. Dynein is also involved in cilia and flagella movement. The dynein subunit consists of at least two heavy chains and a number of intermediate and light chains. The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four correspond to the ATP binding sites with P-loop signatures described previously, and two are modules in which the P loop has been lost in evolution. This C-terminal domain carries the D6 region of the dynein motor where the P-loop has been lost in evolution but the general structure of a potential ATP binding site appears to be retained. Length = 706

>gnl\|CDD\|217325 pfam03028, Dynein_heavy, Dynein heavy chain and region D6 of dynein motor	Back alignment and domain information

>gnl\|CDD\|193257 pfam12781, AAA_9, ATP-binding dynein motor region D5	Back alignment and domain information

>gnl\|CDD\|217325 pfam03028, Dynein_heavy, Dynein heavy chain and region D6 of dynein motor	Back alignment and domain information

>gnl\|CDD\|217325 pfam03028, Dynein_heavy, Dynein heavy chain and region D6 of dynein motor	Back alignment and domain information

>gnl\|CDD\|227570 COG5245, DYN1, Dynein, heavy chain [Cytoskeleton]	Back alignment and domain information

>gnl\|CDD\|193256 pfam12780, AAA_8, P-loop containing dynein motor region D4	Back alignment and domain information

>gnl\|CDD\|193253 pfam12777, MT, Microtubule-binding stalk of dynein motor	Back alignment and domain information

>gnl\|CDD\|236877 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional	Back alignment and domain information

>gnl\|CDD\|219746 pfam08208, RNA_polI_A34, DNA-directed RNA polymerase I subunit RPA34	Back alignment and domain information

>gnl\|CDD\|219746 pfam08208, RNA_polI_A34, DNA-directed RNA polymerase I subunit RPA34	Back alignment and domain information

>gnl\|CDD\|220237 pfam09428, DUF2011, Fungal protein of unknown function (DUF2011)	Back alignment and domain information

>gnl\|CDD\|218336 pfam04935, SURF6, Surfeit locus protein 6	Back alignment and domain information

>gnl\|CDD\|220237 pfam09428, DUF2011, Fungal protein of unknown function (DUF2011)	Back alignment and domain information

>gnl\|CDD\|220237 pfam09428, DUF2011, Fungal protein of unknown function (DUF2011)	Back alignment and domain information

>gnl\|CDD\|220237 pfam09428, DUF2011, Fungal protein of unknown function (DUF2011)	Back alignment and domain information

>gnl\|CDD\|237753 PRK14552, PRK14552, C/D box methylation guide ribonucleoprotein complex aNOP56 subunit; Provisional	Back alignment and domain information

>gnl\|CDD\|220237 pfam09428, DUF2011, Fungal protein of unknown function (DUF2011)	Back alignment and domain information

>gnl\|CDD\|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3	Back alignment and domain information

>gnl\|CDD\|218737 pfam05764, YL1, YL1 nuclear protein	Back alignment and domain information

>gnl\|CDD\|219838 pfam08432, DUF1742, Fungal protein of unknown function (DUF1742)	Back alignment and domain information

>gnl\|CDD\|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional	Back alignment and domain information

>gnl\|CDD\|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional	Back alignment and domain information

>gnl\|CDD\|219838 pfam08432, DUF1742, Fungal protein of unknown function (DUF1742)	Back alignment and domain information

>gnl\|CDD\|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional	Back alignment and domain information

>gnl\|CDD\|219124 pfam06658, DUF1168, Protein of unknown function (DUF1168)	Back alignment and domain information

>gnl\|CDD\|219746 pfam08208, RNA_polI_A34, DNA-directed RNA polymerase I subunit RPA34	Back alignment and domain information

>gnl\|CDD\|219124 pfam06658, DUF1168, Protein of unknown function (DUF1168)	Back alignment and domain information

>gnl\|CDD\|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3	Back alignment and domain information

>gnl\|CDD\|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3	Back alignment and domain information

>gnl\|CDD\|218737 pfam05764, YL1, YL1 nuclear protein	Back alignment and domain information

>gnl\|CDD\|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional	Back alignment and domain information

>gnl\|CDD\|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional	Back alignment and domain information

>gnl\|CDD\|219124 pfam06658, DUF1168, Protein of unknown function (DUF1168)	Back alignment and domain information

>gnl\|CDD\|218737 pfam05764, YL1, YL1 nuclear protein	Back alignment and domain information

>gnl\|CDD\|219838 pfam08432, DUF1742, Fungal protein of unknown function (DUF1742)	Back alignment and domain information

>gnl\|CDD\|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3	Back alignment and domain information

>gnl\|CDD\|218336 pfam04935, SURF6, Surfeit locus protein 6	Back alignment and domain information

>gnl\|CDD\|236877 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional	Back alignment and domain information

>gnl\|CDD\|219746 pfam08208, RNA_polI_A34, DNA-directed RNA polymerase I subunit RPA34	Back alignment and domain information

>gnl\|CDD\|237753 PRK14552, PRK14552, C/D box methylation guide ribonucleoprotein complex aNOP56 subunit; Provisional	Back alignment and domain information

>gnl\|CDD\|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3	Back alignment and domain information

>gnl\|CDD\|172341 PRK13808, PRK13808, adenylate kinase; Provisional	Back alignment and domain information

>gnl\|CDD\|227570 COG5245, DYN1, Dynein, heavy chain [Cytoskeleton]	Back alignment and domain information

>gnl\|CDD\|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3	Back alignment and domain information

>gnl\|CDD\|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3	Back alignment and domain information

>gnl\|CDD\|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3	Back alignment and domain information

>gnl\|CDD\|219838 pfam08432, DUF1742, Fungal protein of unknown function (DUF1742)	Back alignment and domain information

>gnl\|CDD\|219124 pfam06658, DUF1168, Protein of unknown function (DUF1168)	Back alignment and domain information

>gnl\|CDD\|237035 PRK12280, rplW, 50S ribosomal protein L23; Reviewed	Back alignment and domain information

>gnl\|CDD\|185429 PTZ00074, PTZ00074, 60S ribosomal protein L34; Provisional	Back alignment and domain information

>gnl\|CDD\|218737 pfam05764, YL1, YL1 nuclear protein	Back alignment and domain information

>gnl\|CDD\|218737 pfam05764, YL1, YL1 nuclear protein	Back alignment and domain information

>gnl\|CDD\|218737 pfam05764, YL1, YL1 nuclear protein	Back alignment and domain information

>gnl\|CDD\|172341 PRK13808, PRK13808, adenylate kinase; Provisional	Back alignment and domain information

>gnl\|CDD\|236877 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional	Back alignment and domain information

>gnl\|CDD\|218737 pfam05764, YL1, YL1 nuclear protein	Back alignment and domain information

>gnl\|CDD\|173412 PTZ00121, PTZ00121, MAEBL; Provisional	Back alignment and domain information

>gnl\|CDD\|219124 pfam06658, DUF1168, Protein of unknown function (DUF1168)	Back alignment and domain information

>gnl\|CDD\|185429 PTZ00074, PTZ00074, 60S ribosomal protein L34; Provisional	Back alignment and domain information

>gnl\|CDD\|185429 PTZ00074, PTZ00074, 60S ribosomal protein L34; Provisional	Back alignment and domain information

>gnl\|CDD\|173412 PTZ00121, PTZ00121, MAEBL; Provisional	Back alignment and domain information

>gnl\|CDD\|219746 pfam08208, RNA_polI_A34, DNA-directed RNA polymerase I subunit RPA34	Back alignment and domain information

>gnl\|CDD\|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional	Back alignment and domain information

>gnl\|CDD\|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional	Back alignment and domain information

>gnl\|CDD\|173412 PTZ00121, PTZ00121, MAEBL; Provisional	Back alignment and domain information

>gnl\|CDD\|218737 pfam05764, YL1, YL1 nuclear protein	Back alignment and domain information

>gnl\|CDD\|219124 pfam06658, DUF1168, Protein of unknown function (DUF1168)	Back alignment and domain information

>gnl\|CDD\|172341 PRK13808, PRK13808, adenylate kinase; Provisional	Back alignment and domain information

>gnl\|CDD\|173412 PTZ00121, PTZ00121, MAEBL; Provisional	Back alignment and domain information

>gnl\|CDD\|221641 pfam12569, NARP1, NMDA receptor-regulated protein 1	Back alignment and domain information

>gnl\|CDD\|235322 PRK04950, PRK04950, ProP expression regulator; Provisional	Back alignment and domain information

>gnl\|CDD\|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional	Back alignment and domain information

>gnl\|CDD\|185429 PTZ00074, PTZ00074, 60S ribosomal protein L34; Provisional	Back alignment and domain information

>gnl\|CDD\|173412 PTZ00121, PTZ00121, MAEBL; Provisional	Back alignment and domain information

>gnl\|CDD\|235322 PRK04950, PRK04950, ProP expression regulator; Provisional	Back alignment and domain information

>gnl\|CDD\|222636 pfam14265, DUF4355, Domain of unknown function (DUF4355)	Back alignment and domain information

>gnl\|CDD\|218737 pfam05764, YL1, YL1 nuclear protein	Back alignment and domain information

>gnl\|CDD\|172341 PRK13808, PRK13808, adenylate kinase; Provisional	Back alignment and domain information

>gnl\|CDD\|237035 PRK12280, rplW, 50S ribosomal protein L23; Reviewed	Back alignment and domain information

>gnl\|CDD\|185429 PTZ00074, PTZ00074, 60S ribosomal protein L34; Provisional	Back alignment and domain information

>gnl\|CDD\|185429 PTZ00074, PTZ00074, 60S ribosomal protein L34; Provisional	Back alignment and domain information

>gnl\|CDD\|173412 PTZ00121, PTZ00121, MAEBL; Provisional	Back alignment and domain information

>gnl\|CDD\|219746 pfam08208, RNA_polI_A34, DNA-directed RNA polymerase I subunit RPA34	Back alignment and domain information

>gnl\|CDD\|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3	Back alignment and domain information

>gnl\|CDD\|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional	Back alignment and domain information

>gnl\|CDD\|172341 PRK13808, PRK13808, adenylate kinase; Provisional	Back alignment and domain information

>gnl\|CDD\|172341 PRK13808, PRK13808, adenylate kinase; Provisional	Back alignment and domain information

>gnl\|CDD\|172341 PRK13808, PRK13808, adenylate kinase; Provisional	Back alignment and domain information

>gnl\|CDD\|185429 PTZ00074, PTZ00074, 60S ribosomal protein L34; Provisional	Back alignment and domain information

>gnl\|CDD\|185429 PTZ00074, PTZ00074, 60S ribosomal protein L34; Provisional	Back alignment and domain information

>gnl\|CDD\|185429 PTZ00074, PTZ00074, 60S ribosomal protein L34; Provisional	Back alignment and domain information

>gnl\|CDD\|185429 PTZ00074, PTZ00074, 60S ribosomal protein L34; Provisional	Back alignment and domain information

>gnl\|CDD\|185429 PTZ00074, PTZ00074, 60S ribosomal protein L34; Provisional	Back alignment and domain information

>gnl\|CDD\|173412 PTZ00121, PTZ00121, MAEBL; Provisional	Back alignment and domain information

>gnl\|CDD\|173412 PTZ00121, PTZ00121, MAEBL; Provisional	Back alignment and domain information

>gnl\|CDD\|150884 pfam10278, Med19, Mediator of RNA pol II transcription subunit 19	Back alignment and domain information

>gnl\|CDD\|235401 PRK05306, infB, translation initiation factor IF-2; Validated	Back alignment and domain information

>gnl\|CDD\|236048 PRK07561, PRK07561, DNA topoisomerase I subunit omega; Validated	Back alignment and domain information

>gnl\|CDD\|219746 pfam08208, RNA_polI_A34, DNA-directed RNA polymerase I subunit RPA34	Back alignment and domain information

>gnl\|CDD\|218336 pfam04935, SURF6, Surfeit locus protein 6	Back alignment and domain information

>gnl\|CDD\|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3	Back alignment and domain information

>gnl\|CDD\|219838 pfam08432, DUF1742, Fungal protein of unknown function (DUF1742)	Back alignment and domain information

>gnl\|CDD\|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional	Back alignment and domain information

>gnl\|CDD\|172341 PRK13808, PRK13808, adenylate kinase; Provisional	Back alignment and domain information

>gnl\|CDD\|172341 PRK13808, PRK13808, adenylate kinase; Provisional	Back alignment and domain information

>gnl\|CDD\|172341 PRK13808, PRK13808, adenylate kinase; Provisional	Back alignment and domain information

>gnl\|CDD\|172341 PRK13808, PRK13808, adenylate kinase; Provisional	Back alignment and domain information

>gnl\|CDD\|237035 PRK12280, rplW, 50S ribosomal protein L23; Reviewed	Back alignment and domain information

>gnl\|CDD\|185429 PTZ00074, PTZ00074, 60S ribosomal protein L34; Provisional	Back alignment and domain information

>gnl\|CDD\|185429 PTZ00074, PTZ00074, 60S ribosomal protein L34; Provisional	Back alignment and domain information

>gnl\|CDD\|185429 PTZ00074, PTZ00074, 60S ribosomal protein L34; Provisional	Back alignment and domain information

>gnl\|CDD\|185429 PTZ00074, PTZ00074, 60S ribosomal protein L34; Provisional	Back alignment and domain information

>gnl\|CDD\|236048 PRK07561, PRK07561, DNA topoisomerase I subunit omega; Validated	Back alignment and domain information

>gnl\|CDD\|203848 pfam08079, Ribosomal_L30_N, Ribosomal L30 N-terminal domain	Back alignment and domain information

>gnl\|CDD\|234017 TIGR02794, tolA_full, TolA protein	Back alignment and domain information

>gnl\|CDD\|218899 pfam06102, DUF947, Domain of unknown function (DUF947)	Back alignment and domain information

>gnl\|CDD\|227570 COG5245, DYN1, Dynein, heavy chain [Cytoskeleton]	Back alignment and domain information

>gnl\|CDD\|219838 pfam08432, DUF1742, Fungal protein of unknown function (DUF1742)	Back alignment and domain information

>gnl\|CDD\|173412 PTZ00121, PTZ00121, MAEBL; Provisional	Back alignment and domain information

>gnl\|CDD\|173412 PTZ00121, PTZ00121, MAEBL; Provisional	Back alignment and domain information

>gnl\|CDD\|173412 PTZ00121, PTZ00121, MAEBL; Provisional	Back alignment and domain information

>gnl\|CDD\|235322 PRK04950, PRK04950, ProP expression regulator; Provisional	Back alignment and domain information

>gnl\|CDD\|234017 TIGR02794, tolA_full, TolA protein	Back alignment and domain information

>gnl\|CDD\|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3	Back alignment and domain information

>gnl\|CDD\|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3	Back alignment and domain information

>gnl\|CDD\|172341 PRK13808, PRK13808, adenylate kinase; Provisional	Back alignment and domain information

>gnl\|CDD\|173412 PTZ00121, PTZ00121, MAEBL; Provisional	Back alignment and domain information

>gnl\|CDD\|221641 pfam12569, NARP1, NMDA receptor-regulated protein 1	Back alignment and domain information

>gnl\|CDD\|217834 pfam03998, Utp11, Utp11 protein	Back alignment and domain information

>gnl\|CDD\|221028 pfam11208, DUF2992, Protein of unknown function (DUF2992)	Back alignment and domain information

>gnl\|CDD\|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3	Back alignment and domain information

>gnl\|CDD\|173412 PTZ00121, PTZ00121, MAEBL; Provisional	Back alignment and domain information

>gnl\|CDD\|235322 PRK04950, PRK04950, ProP expression regulator; Provisional	Back alignment and domain information

>gnl\|CDD\|235322 PRK04950, PRK04950, ProP expression regulator; Provisional	Back alignment and domain information

>gnl\|CDD\|236048 PRK07561, PRK07561, DNA topoisomerase I subunit omega; Validated	Back alignment and domain information

>gnl\|CDD\|173412 PTZ00121, PTZ00121, MAEBL; Provisional	Back alignment and domain information

>gnl\|CDD\|173412 PTZ00121, PTZ00121, MAEBL; Provisional	Back alignment and domain information

>gnl\|CDD\|219924 pfam08597, eIF3_subunit, Translation initiation factor eIF3 subunit	Back alignment and domain information

>gnl\|CDD\|240388 PTZ00372, PTZ00372, endonuclease 4-like protein; Provisional	Back alignment and domain information

>gnl\|CDD\|237035 PRK12280, rplW, 50S ribosomal protein L23; Reviewed	Back alignment and domain information

>gnl\|CDD\|235322 PRK04950, PRK04950, ProP expression regulator; Provisional	Back alignment and domain information

>gnl\|CDD\|236048 PRK07561, PRK07561, DNA topoisomerase I subunit omega; Validated	Back alignment and domain information

>gnl\|CDD\|218899 pfam06102, DUF947, Domain of unknown function (DUF947)	Back alignment and domain information

>gnl\|CDD\|218188 pfam04641, Rtf2, Replication termination factor 2	Back alignment and domain information

>gnl\|CDD\|219838 pfam08432, DUF1742, Fungal protein of unknown function (DUF1742)	Back alignment and domain information

>gnl\|CDD\|173412 PTZ00121, PTZ00121, MAEBL; Provisional	Back alignment and domain information

>gnl\|CDD\|221641 pfam12569, NARP1, NMDA receptor-regulated protein 1	Back alignment and domain information

>gnl\|CDD\|150884 pfam10278, Med19, Mediator of RNA pol II transcription subunit 19	Back alignment and domain information

>gnl\|CDD\|218899 pfam06102, DUF947, Domain of unknown function (DUF947)	Back alignment and domain information

>gnl\|CDD\|235322 PRK04950, PRK04950, ProP expression regulator; Provisional	Back alignment and domain information

>gnl\|CDD\|222636 pfam14265, DUF4355, Domain of unknown function (DUF4355)	Back alignment and domain information

>gnl\|CDD\|222636 pfam14265, DUF4355, Domain of unknown function (DUF4355)	Back alignment and domain information

>gnl\|CDD\|236048 PRK07561, PRK07561, DNA topoisomerase I subunit omega; Validated	Back alignment and domain information

>gnl\|CDD\|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3	Back alignment and domain information

>gnl\|CDD\|172341 PRK13808, PRK13808, adenylate kinase; Provisional	Back alignment and domain information

>gnl\|CDD\|221641 pfam12569, NARP1, NMDA receptor-regulated protein 1	Back alignment and domain information

>gnl\|CDD\|235322 PRK04950, PRK04950, ProP expression regulator; Provisional	Back alignment and domain information

>gnl\|CDD\|235322 PRK04950, PRK04950, ProP expression regulator; Provisional	Back alignment and domain information

>gnl\|CDD\|236048 PRK07561, PRK07561, DNA topoisomerase I subunit omega; Validated	Back alignment and domain information

>gnl\|CDD\|236048 PRK07561, PRK07561, DNA topoisomerase I subunit omega; Validated	Back alignment and domain information

>gnl\|CDD\|234017 TIGR02794, tolA_full, TolA protein	Back alignment and domain information

>gnl\|CDD\|240388 PTZ00372, PTZ00372, endonuclease 4-like protein; Provisional	Back alignment and domain information

>gnl\|CDD\|218188 pfam04641, Rtf2, Replication termination factor 2	Back alignment and domain information

>gnl\|CDD\|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3	Back alignment and domain information

>gnl\|CDD\|173412 PTZ00121, PTZ00121, MAEBL; Provisional	Back alignment and domain information

>gnl\|CDD\|173412 PTZ00121, PTZ00121, MAEBL; Provisional	Back alignment and domain information

>gnl\|CDD\|222636 pfam14265, DUF4355, Domain of unknown function (DUF4355)	Back alignment and domain information

>gnl\|CDD\|236048 PRK07561, PRK07561, DNA topoisomerase I subunit omega; Validated	Back alignment and domain information

>gnl\|CDD\|236048 PRK07561, PRK07561, DNA topoisomerase I subunit omega; Validated	Back alignment and domain information

>gnl\|CDD\|234017 TIGR02794, tolA_full, TolA protein	Back alignment and domain information

>gnl\|CDD\|234017 TIGR02794, tolA_full, TolA protein	Back alignment and domain information

>gnl\|CDD\|234017 TIGR02794, tolA_full, TolA protein	Back alignment and domain information

>gnl\|CDD\|240388 PTZ00372, PTZ00372, endonuclease 4-like protein; Provisional	Back alignment and domain information

>gnl\|CDD\|240388 PTZ00372, PTZ00372, endonuclease 4-like protein; Provisional	Back alignment and domain information

>gnl\|CDD\|219901 pfam08555, DUF1754, Eukaryotic family of unknown function (DUF1754)	Back alignment and domain information

>gnl\|CDD\|219901 pfam08555, DUF1754, Eukaryotic family of unknown function (DUF1754)	Back alignment and domain information

>gnl\|CDD\|223880 COG0810, TonB, Periplasmic protein TonB, links inner and outer membranes [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>gnl\|CDD\|224415 COG1498, SIK1, Protein implicated in ribosomal biogenesis, Nop56p homolog [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>gnl\|CDD\|222636 pfam14265, DUF4355, Domain of unknown function (DUF4355)	Back alignment and domain information

>gnl\|CDD\|236048 PRK07561, PRK07561, DNA topoisomerase I subunit omega; Validated	Back alignment and domain information

>gnl\|CDD\|236048 PRK07561, PRK07561, DNA topoisomerase I subunit omega; Validated	Back alignment and domain information

>gnl\|CDD\|240388 PTZ00372, PTZ00372, endonuclease 4-like protein; Provisional	Back alignment and domain information

>gnl\|CDD\|218188 pfam04641, Rtf2, Replication termination factor 2	Back alignment and domain information

>gnl\|CDD\|218188 pfam04641, Rtf2, Replication termination factor 2	Back alignment and domain information

>gnl\|CDD\|219901 pfam08555, DUF1754, Eukaryotic family of unknown function (DUF1754)	Back alignment and domain information

>gnl\|CDD\|219901 pfam08555, DUF1754, Eukaryotic family of unknown function (DUF1754)	Back alignment and domain information

>gnl\|CDD\|223880 COG0810, TonB, Periplasmic protein TonB, links inner and outer membranes [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>gnl\|CDD\|236944 PRK11642, PRK11642, exoribonuclease R; Provisional	Back alignment and domain information

>gnl\|CDD\|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional	Back alignment and domain information

>gnl\|CDD\|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional	Back alignment and domain information

>gnl\|CDD\|227570 COG5245, DYN1, Dynein, heavy chain [Cytoskeleton]	Back alignment and domain information

>gnl\|CDD\|173412 PTZ00121, PTZ00121, MAEBL; Provisional	Back alignment and domain information

>gnl\|CDD\|173412 PTZ00121, PTZ00121, MAEBL; Provisional	Back alignment and domain information

>gnl\|CDD\|173412 PTZ00121, PTZ00121, MAEBL; Provisional	Back alignment and domain information

>gnl\|CDD\|222636 pfam14265, DUF4355, Domain of unknown function (DUF4355)	Back alignment and domain information

>gnl\|CDD\|236048 PRK07561, PRK07561, DNA topoisomerase I subunit omega; Validated	Back alignment and domain information

>gnl\|CDD\|203848 pfam08079, Ribosomal_L30_N, Ribosomal L30 N-terminal domain	Back alignment and domain information

>gnl\|CDD\|240388 PTZ00372, PTZ00372, endonuclease 4-like protein; Provisional	Back alignment and domain information

>gnl\|CDD\|223880 COG0810, TonB, Periplasmic protein TonB, links inner and outer membranes [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>gnl\|CDD\|223880 COG0810, TonB, Periplasmic protein TonB, links inner and outer membranes [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>gnl\|CDD\|222665 pfam14303, NAM-associated, No apical meristem-associated C-terminal domain	Back alignment and domain information

>gnl\|CDD\|240254 PTZ00069, PTZ00069, 60S ribosomal protein L5; Provisional	Back alignment and domain information

>gnl\|CDD\|218336 pfam04935, SURF6, Surfeit locus protein 6	Back alignment and domain information

>gnl\|CDD\|235322 PRK04950, PRK04950, ProP expression regulator; Provisional	Back alignment and domain information

>gnl\|CDD\|235322 PRK04950, PRK04950, ProP expression regulator; Provisional	Back alignment and domain information

>gnl\|CDD\|234017 TIGR02794, tolA_full, TolA protein	Back alignment and domain information

>gnl\|CDD\|240388 PTZ00372, PTZ00372, endonuclease 4-like protein; Provisional	Back alignment and domain information

>gnl\|CDD\|223880 COG0810, TonB, Periplasmic protein TonB, links inner and outer membranes [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>gnl\|CDD\|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional	Back alignment and domain information

>gnl\|CDD\|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional	Back alignment and domain information

>gnl\|CDD\|172341 PRK13808, PRK13808, adenylate kinase; Provisional	Back alignment and domain information

>gnl\|CDD\|222636 pfam14265, DUF4355, Domain of unknown function (DUF4355)	Back alignment and domain information

>gnl\|CDD\|240388 PTZ00372, PTZ00372, endonuclease 4-like protein; Provisional	Back alignment and domain information

>gnl\|CDD\|236944 PRK11642, PRK11642, exoribonuclease R; Provisional	Back alignment and domain information

>gnl\|CDD\|240254 PTZ00069, PTZ00069, 60S ribosomal protein L5; Provisional	Back alignment and domain information

>gnl\|CDD\|218538 pfam05285, SDA1, SDA1	Back alignment and domain information

>gnl\|CDD\|173412 PTZ00121, PTZ00121, MAEBL; Provisional	Back alignment and domain information

>gnl\|CDD\|150884 pfam10278, Med19, Mediator of RNA pol II transcription subunit 19	Back alignment and domain information

>gnl\|CDD\|240388 PTZ00372, PTZ00372, endonuclease 4-like protein; Provisional	Back alignment and domain information

>gnl\|CDD\|219901 pfam08555, DUF1754, Eukaryotic family of unknown function (DUF1754)	Back alignment and domain information

>gnl\|CDD\|240254 PTZ00069, PTZ00069, 60S ribosomal protein L5; Provisional	Back alignment and domain information

>gnl\|CDD\|184900 PRK14907, rplD, 50S ribosomal protein L4; Provisional	Back alignment and domain information

>gnl\|CDD\|220252 pfam09468, RNase_H2-Ydr279, Ydr279p protein family (RNase H2 complex component)	Back alignment and domain information

>gnl\|CDD\|219924 pfam08597, eIF3_subunit, Translation initiation factor eIF3 subunit	Back alignment and domain information

>gnl\|CDD\|223880 COG0810, TonB, Periplasmic protein TonB, links inner and outer membranes [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>gnl\|CDD\|240254 PTZ00069, PTZ00069, 60S ribosomal protein L5; Provisional	Back alignment and domain information

>gnl\|CDD\|148820 pfam07432, Hc1, Histone H1-like protein Hc1	Back alignment and domain information

>gnl\|CDD\|214661 smart00435, TOPEUc, DNA Topoisomerase I (eukaryota)	Back alignment and domain information

>gnl\|CDD\|222636 pfam14265, DUF4355, Domain of unknown function (DUF4355)	Back alignment and domain information

>gnl\|CDD\|224415 COG1498, SIK1, Protein implicated in ribosomal biogenesis, Nop56p homolog [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>gnl\|CDD\|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional	Back alignment and domain information

>gnl\|CDD\|240254 PTZ00069, PTZ00069, 60S ribosomal protein L5; Provisional	Back alignment and domain information

>gnl\|CDD\|240254 PTZ00069, PTZ00069, 60S ribosomal protein L5; Provisional	Back alignment and domain information

>gnl\|CDD\|173412 PTZ00121, PTZ00121, MAEBL; Provisional	Back alignment and domain information

>gnl\|CDD\|222636 pfam14265, DUF4355, Domain of unknown function (DUF4355)	Back alignment and domain information

>gnl\|CDD\|222636 pfam14265, DUF4355, Domain of unknown function (DUF4355)	Back alignment and domain information

>gnl\|CDD\|222636 pfam14265, DUF4355, Domain of unknown function (DUF4355)	Back alignment and domain information

>gnl\|CDD\|222636 pfam14265, DUF4355, Domain of unknown function (DUF4355)	Back alignment and domain information

>gnl\|CDD\|150884 pfam10278, Med19, Mediator of RNA pol II transcription subunit 19	Back alignment and domain information

>gnl\|CDD\|203848 pfam08079, Ribosomal_L30_N, Ribosomal L30 N-terminal domain	Back alignment and domain information

>gnl\|CDD\|234017 TIGR02794, tolA_full, TolA protein	Back alignment and domain information

>gnl\|CDD\|234017 TIGR02794, tolA_full, TolA protein	Back alignment and domain information

>gnl\|CDD\|234017 TIGR02794, tolA_full, TolA protein	Back alignment and domain information

>gnl\|CDD\|219901 pfam08555, DUF1754, Eukaryotic family of unknown function (DUF1754)	Back alignment and domain information

>gnl\|CDD\|236944 PRK11642, PRK11642, exoribonuclease R; Provisional	Back alignment and domain information

>gnl\|CDD\|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional	Back alignment and domain information

>gnl\|CDD\|220252 pfam09468, RNase_H2-Ydr279, Ydr279p protein family (RNase H2 complex component)	Back alignment and domain information

>gnl\|CDD\|215214 PLN02381, PLN02381, valyl-tRNA synthetase	Back alignment and domain information

>gnl\|CDD\|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional	Back alignment and domain information

>gnl\|CDD\|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional	Back alignment and domain information

>gnl\|CDD\|219572 pfam07780, Spb1_C, Spb1 C-terminal domain	Back alignment and domain information

>gnl\|CDD\|219868 pfam08496, Peptidase_S49_N, Peptidase family S49 N-terminal	Back alignment and domain information

>gnl\|CDD\|219868 pfam08496, Peptidase_S49_N, Peptidase family S49 N-terminal	Back alignment and domain information

>gnl\|CDD\|224668 COG1754, COG1754, Uncharacterized C-terminal domain of topoisomerase IA [General function prediction only]	Back alignment and domain information

>gnl\|CDD\|219978 pfam08701, GN3L_Grn1, GNL3L/Grn1 putative GTPase	Back alignment and domain information

>gnl\|CDD\|217502 pfam03343, SART-1, SART-1 family	Back alignment and domain information

>gnl\|CDD\|218336 pfam04935, SURF6, Surfeit locus protein 6	Back alignment and domain information

>gnl\|CDD\|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3	Back alignment and domain information

>gnl\|CDD\|172341 PRK13808, PRK13808, adenylate kinase; Provisional	Back alignment and domain information

>gnl\|CDD\|173412 PTZ00121, PTZ00121, MAEBL; Provisional	Back alignment and domain information

>gnl\|CDD\|173412 PTZ00121, PTZ00121, MAEBL; Provisional	Back alignment and domain information

>gnl\|CDD\|173412 PTZ00121, PTZ00121, MAEBL; Provisional	Back alignment and domain information

>gnl\|CDD\|173412 PTZ00121, PTZ00121, MAEBL; Provisional	Back alignment and domain information

>gnl\|CDD\|173412 PTZ00121, PTZ00121, MAEBL; Provisional	Back alignment and domain information

>gnl\|CDD\|173412 PTZ00121, PTZ00121, MAEBL; Provisional	Back alignment and domain information

>gnl\|CDD\|173412 PTZ00121, PTZ00121, MAEBL; Provisional	Back alignment and domain information

>gnl\|CDD\|173412 PTZ00121, PTZ00121, MAEBL; Provisional	Back alignment and domain information

>gnl\|CDD\|173412 PTZ00121, PTZ00121, MAEBL; Provisional	Back alignment and domain information

>gnl\|CDD\|173412 PTZ00121, PTZ00121, MAEBL; Provisional	Back alignment and domain information

>gnl\|CDD\|173412 PTZ00121, PTZ00121, MAEBL; Provisional	Back alignment and domain information

>gnl\|CDD\|173412 PTZ00121, PTZ00121, MAEBL; Provisional	Back alignment and domain information

>gnl\|CDD\|235322 PRK04950, PRK04950, ProP expression regulator; Provisional	Back alignment and domain information

>gnl\|CDD\|235322 PRK04950, PRK04950, ProP expression regulator; Provisional	Back alignment and domain information

>gnl\|CDD\|203848 pfam08079, Ribosomal_L30_N, Ribosomal L30 N-terminal domain	Back alignment and domain information

>gnl\|CDD\|234017 TIGR02794, tolA_full, TolA protein	Back alignment and domain information

>gnl\|CDD\|234017 TIGR02794, tolA_full, TolA protein	Back alignment and domain information

>gnl\|CDD\|234017 TIGR02794, tolA_full, TolA protein	Back alignment and domain information

>gnl\|CDD\|218188 pfam04641, Rtf2, Replication termination factor 2	Back alignment and domain information

>gnl\|CDD\|219901 pfam08555, DUF1754, Eukaryotic family of unknown function (DUF1754)	Back alignment and domain information

>gnl\|CDD\|223880 COG0810, TonB, Periplasmic protein TonB, links inner and outer membranes [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>gnl\|CDD\|223880 COG0810, TonB, Periplasmic protein TonB, links inner and outer membranes [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>gnl\|CDD\|224415 COG1498, SIK1, Protein implicated in ribosomal biogenesis, Nop56p homolog [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>gnl\|CDD\|236944 PRK11642, PRK11642, exoribonuclease R; Provisional	Back alignment and domain information

>gnl\|CDD\|236944 PRK11642, PRK11642, exoribonuclease R; Provisional	Back alignment and domain information

>gnl\|CDD\|236944 PRK11642, PRK11642, exoribonuclease R; Provisional	Back alignment and domain information

>gnl\|CDD\|184900 PRK14907, rplD, 50S ribosomal protein L4; Provisional	Back alignment and domain information

>gnl\|CDD\|184900 PRK14907, rplD, 50S ribosomal protein L4; Provisional	Back alignment and domain information

>gnl\|CDD\|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional	Back alignment and domain information

>gnl\|CDD\|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional	Back alignment and domain information

>gnl\|CDD\|219563 pfam07767, Nop53, Nop53 (60S ribosomal biogenesis)	Back alignment and domain information

>gnl\|CDD\|219913 pfam08576, DUF1764, Eukaryotic protein of unknown function (DUF1764)	Back alignment and domain information

>gnl\|CDD\|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>gnl\|CDD\|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3	Back alignment and domain information

>gnl\|CDD\|173412 PTZ00121, PTZ00121, MAEBL; Provisional	Back alignment and domain information

>gnl\|CDD\|173412 PTZ00121, PTZ00121, MAEBL; Provisional	Back alignment and domain information

>gnl\|CDD\|173412 PTZ00121, PTZ00121, MAEBL; Provisional	Back alignment and domain information

>gnl\|CDD\|222636 pfam14265, DUF4355, Domain of unknown function (DUF4355)	Back alignment and domain information

>gnl\|CDD\|203848 pfam08079, Ribosomal_L30_N, Ribosomal L30 N-terminal domain	Back alignment and domain information

>gnl\|CDD\|217834 pfam03998, Utp11, Utp11 protein	Back alignment and domain information

>gnl\|CDD\|240388 PTZ00372, PTZ00372, endonuclease 4-like protein; Provisional	Back alignment and domain information

>gnl\|CDD\|223880 COG0810, TonB, Periplasmic protein TonB, links inner and outer membranes [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>gnl\|CDD\|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional	Back alignment and domain information

>gnl\|CDD\|184900 PRK14907, rplD, 50S ribosomal protein L4; Provisional	Back alignment and domain information

>gnl\|CDD\|184900 PRK14907, rplD, 50S ribosomal protein L4; Provisional	Back alignment and domain information

>gnl\|CDD\|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>gnl\|CDD\|220376 pfam09745, DUF2040, Coiled-coil domain-containing protein 55 (DUF2040)	Back alignment and domain information

>gnl\|CDD\|219655 pfam07946, DUF1682, Protein of unknown function (DUF1682)	Back alignment and domain information

>gnl\|CDD\|218612 pfam05501, DUF755, Domain of unknown function (DUF755)	Back alignment and domain information

>gnl\|CDD\|221654 pfam12589, WBS_methylT, Methyltransferase involved in Williams-Beuren syndrome	Back alignment and domain information

>gnl\|CDD\|222447 pfam13904, DUF4207, Domain of unknown function (DUF4207)	Back alignment and domain information

>gnl\|CDD\|185507 PTZ00191, PTZ00191, 60S ribosomal protein L23a; Provisional	Back alignment and domain information

>gnl\|CDD\|220838 pfam10659, Trypan_glycop_C, Trypanosome variant surface glycoprotein C-terminal domain	Back alignment and domain information

>gnl\|CDD\|218797 pfam05890, Ebp2, Eukaryotic rRNA processing protein EBP2	Back alignment and domain information

>gnl\|CDD\|240246 PTZ00053, PTZ00053, methionine aminopeptidase 2; Provisional	Back alignment and domain information

>gnl\|CDD\|222581 pfam14181, YqfQ, YqfQ-like protein	Back alignment and domain information

>gnl\|CDD\|173412 PTZ00121, PTZ00121, MAEBL; Provisional	Back alignment and domain information

>gnl\|CDD\|173412 PTZ00121, PTZ00121, MAEBL; Provisional	Back alignment and domain information

>gnl\|CDD\|173412 PTZ00121, PTZ00121, MAEBL; Provisional	Back alignment and domain information

>gnl\|CDD\|173412 PTZ00121, PTZ00121, MAEBL; Provisional	Back alignment and domain information

>gnl\|CDD\|234017 TIGR02794, tolA_full, TolA protein	Back alignment and domain information

>gnl\|CDD\|234017 TIGR02794, tolA_full, TolA protein	Back alignment and domain information

>gnl\|CDD\|234017 TIGR02794, tolA_full, TolA protein	Back alignment and domain information

>gnl\|CDD\|240254 PTZ00069, PTZ00069, 60S ribosomal protein L5; Provisional	Back alignment and domain information

>gnl\|CDD\|219868 pfam08496, Peptidase_S49_N, Peptidase family S49 N-terminal	Back alignment and domain information

>gnl\|CDD\|219868 pfam08496, Peptidase_S49_N, Peptidase family S49 N-terminal	Back alignment and domain information

>gnl\|CDD\|219868 pfam08496, Peptidase_S49_N, Peptidase family S49 N-terminal	Back alignment and domain information

>gnl\|CDD\|219978 pfam08701, GN3L_Grn1, GNL3L/Grn1 putative GTPase	Back alignment and domain information

>gnl\|CDD\|235778 PRK06319, PRK06319, DNA topoisomerase I/SWI domain fusion protein; Validated	Back alignment and domain information

>gnl\|CDD\|220431 pfam09831, DUF2058, Uncharacterized protein conserved in bacteria (DUF2058)	Back alignment and domain information

>gnl\|CDD\|221712 pfam12687, DUF3801, Protein of unknown function (DUF3801)	Back alignment and domain information

>gnl\|CDD\|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3	Back alignment and domain information

>gnl\|CDD\|218737 pfam05764, YL1, YL1 nuclear protein	Back alignment and domain information

>gnl\|CDD\|173412 PTZ00121, PTZ00121, MAEBL; Provisional	Back alignment and domain information

>gnl\|CDD\|173412 PTZ00121, PTZ00121, MAEBL; Provisional	Back alignment and domain information

>gnl\|CDD\|173412 PTZ00121, PTZ00121, MAEBL; Provisional	Back alignment and domain information

>gnl\|CDD\|150884 pfam10278, Med19, Mediator of RNA pol II transcription subunit 19	Back alignment and domain information

>gnl\|CDD\|203848 pfam08079, Ribosomal_L30_N, Ribosomal L30 N-terminal domain	Back alignment and domain information

>gnl\|CDD\|234017 TIGR02794, tolA_full, TolA protein	Back alignment and domain information

>gnl\|CDD\|234017 TIGR02794, tolA_full, TolA protein	Back alignment and domain information

>gnl\|CDD\|240388 PTZ00372, PTZ00372, endonuclease 4-like protein; Provisional	Back alignment and domain information

>gnl\|CDD\|220271 pfam09507, CDC27, DNA polymerase subunit Cdc27	Back alignment and domain information

>gnl\|CDD\|173412 PTZ00121, PTZ00121, MAEBL; Provisional	Back alignment and domain information

>gnl\|CDD\|173412 PTZ00121, PTZ00121, MAEBL; Provisional	Back alignment and domain information

>gnl\|CDD\|173412 PTZ00121, PTZ00121, MAEBL; Provisional	Back alignment and domain information

>gnl\|CDD\|173412 PTZ00121, PTZ00121, MAEBL; Provisional	Back alignment and domain information

>gnl\|CDD\|220252 pfam09468, RNase_H2-Ydr279, Ydr279p protein family (RNase H2 complex component)	Back alignment and domain information

>gnl\|CDD\|220252 pfam09468, RNase_H2-Ydr279, Ydr279p protein family (RNase H2 complex component)	Back alignment and domain information

>gnl\|CDD\|219868 pfam08496, Peptidase_S49_N, Peptidase family S49 N-terminal	Back alignment and domain information

>gnl\|CDD\|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>gnl\|CDD\|185507 PTZ00191, PTZ00191, 60S ribosomal protein L23a; Provisional	Back alignment and domain information

>gnl\|CDD\|220838 pfam10659, Trypan_glycop_C, Trypanosome variant surface glycoprotein C-terminal domain	Back alignment and domain information

>gnl\|CDD\|240271 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional	Back alignment and domain information

>gnl\|CDD\|220371 pfam09736, Bud13, Pre-mRNA-splicing factor of RES complex	Back alignment and domain information

>gnl\|CDD\|221857 pfam12923, RRP7, Ribosomal RNA-processing protein 7 (RRP7)	Back alignment and domain information

>gnl\|CDD\|236978 PRK11778, PRK11778, putative inner membrane peptidase; Provisional	Back alignment and domain information

>gnl\|CDD\|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3	Back alignment and domain information

>gnl\|CDD\|173412 PTZ00121, PTZ00121, MAEBL; Provisional	Back alignment and domain information

>gnl\|CDD\|173412 PTZ00121, PTZ00121, MAEBL; Provisional	Back alignment and domain information

>gnl\|CDD\|173412 PTZ00121, PTZ00121, MAEBL; Provisional	Back alignment and domain information

>gnl\|CDD\|240388 PTZ00372, PTZ00372, endonuclease 4-like protein; Provisional	Back alignment and domain information

>gnl\|CDD\|240254 PTZ00069, PTZ00069, 60S ribosomal protein L5; Provisional	Back alignment and domain information

>gnl\|CDD\|184900 PRK14907, rplD, 50S ribosomal protein L4; Provisional	Back alignment and domain information

>gnl\|CDD\|215214 PLN02381, PLN02381, valyl-tRNA synthetase	Back alignment and domain information

>gnl\|CDD\|219913 pfam08576, DUF1764, Eukaryotic protein of unknown function (DUF1764)	Back alignment and domain information

>gnl\|CDD\|220838 pfam10659, Trypan_glycop_C, Trypanosome variant surface glycoprotein C-terminal domain	Back alignment and domain information

>gnl\|CDD\|173412 PTZ00121, PTZ00121, MAEBL; Provisional	Back alignment and domain information

>gnl\|CDD\|173412 PTZ00121, PTZ00121, MAEBL; Provisional	Back alignment and domain information

>gnl\|CDD\|236048 PRK07561, PRK07561, DNA topoisomerase I subunit omega; Validated	Back alignment and domain information

>gnl\|CDD\|234017 TIGR02794, tolA_full, TolA protein	Back alignment and domain information

>gnl\|CDD\|223880 COG0810, TonB, Periplasmic protein TonB, links inner and outer membranes [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>gnl\|CDD\|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional	Back alignment and domain information

>gnl\|CDD\|240254 PTZ00069, PTZ00069, 60S ribosomal protein L5; Provisional	Back alignment and domain information

>gnl\|CDD\|148820 pfam07432, Hc1, Histone H1-like protein Hc1	Back alignment and domain information

>gnl\|CDD\|219913 pfam08576, DUF1764, Eukaryotic protein of unknown function (DUF1764)	Back alignment and domain information

>gnl\|CDD\|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>gnl\|CDD\|235778 PRK06319, PRK06319, DNA topoisomerase I/SWI domain fusion protein; Validated	Back alignment and domain information

>gnl\|CDD\|221641 pfam12569, NARP1, NMDA receptor-regulated protein 1	Back alignment and domain information

>gnl\|CDD\|222581 pfam14181, YqfQ, YqfQ-like protein	Back alignment and domain information

>gnl\|CDD\|235778 PRK06319, PRK06319, DNA topoisomerase I/SWI domain fusion protein; Validated	Back alignment and domain information

>gnl\|CDD\|218177 pfam04615, Utp14, Utp14 protein	Back alignment and domain information

>gnl\|CDD\|237753 PRK14552, PRK14552, C/D box methylation guide ribonucleoprotein complex aNOP56 subunit; Provisional	Back alignment and domain information

>gnl\|CDD\|185429 PTZ00074, PTZ00074, 60S ribosomal protein L34; Provisional	Back alignment and domain information

>gnl\|CDD\|222636 pfam14265, DUF4355, Domain of unknown function (DUF4355)	Back alignment and domain information

>gnl\|CDD\|234017 TIGR02794, tolA_full, TolA protein	Back alignment and domain information

>gnl\|CDD\|234017 TIGR02794, tolA_full, TolA protein	Back alignment and domain information

>gnl\|CDD\|234017 TIGR02794, tolA_full, TolA protein	Back alignment and domain information

>gnl\|CDD\|234017 TIGR02794, tolA_full, TolA protein	Back alignment and domain information

>gnl\|CDD\|240388 PTZ00372, PTZ00372, endonuclease 4-like protein; Provisional	Back alignment and domain information

>gnl\|CDD\|223880 COG0810, TonB, Periplasmic protein TonB, links inner and outer membranes [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>gnl\|CDD\|223880 COG0810, TonB, Periplasmic protein TonB, links inner and outer membranes [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>gnl\|CDD\|223880 COG0810, TonB, Periplasmic protein TonB, links inner and outer membranes [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>gnl\|CDD\|240254 PTZ00069, PTZ00069, 60S ribosomal protein L5; Provisional	Back alignment and domain information

>gnl\|CDD\|220252 pfam09468, RNase_H2-Ydr279, Ydr279p protein family (RNase H2 complex component)	Back alignment and domain information

>gnl\|CDD\|220252 pfam09468, RNase_H2-Ydr279, Ydr279p protein family (RNase H2 complex component)	Back alignment and domain information

>gnl\|CDD\|214661 smart00435, TOPEUc, DNA Topoisomerase I (eukaryota)	Back alignment and domain information

>gnl\|CDD\|215214 PLN02381, PLN02381, valyl-tRNA synthetase	Back alignment and domain information

>gnl\|CDD\|219868 pfam08496, Peptidase_S49_N, Peptidase family S49 N-terminal	Back alignment and domain information

>gnl\|CDD\|218797 pfam05890, Ebp2, Eukaryotic rRNA processing protein EBP2	Back alignment and domain information

>gnl\|CDD\|235778 PRK06319, PRK06319, DNA topoisomerase I/SWI domain fusion protein; Validated	Back alignment and domain information

>gnl\|CDD\|218177 pfam04615, Utp14, Utp14 protein	Back alignment and domain information

>gnl\|CDD\|240317 PTZ00217, PTZ00217, flap endonuclease-1; Provisional	Back alignment and domain information

>gnl\|CDD\|240317 PTZ00217, PTZ00217, flap endonuclease-1; Provisional	Back alignment and domain information

>gnl\|CDD\|235971 PRK07219, PRK07219, DNA topoisomerase I; Validated	Back alignment and domain information

>gnl\|CDD\|235971 PRK07219, PRK07219, DNA topoisomerase I; Validated	Back alignment and domain information

>gnl\|CDD\|237855 PRK14900, valS, valyl-tRNA synthetase; Provisional	Back alignment and domain information

>gnl\|CDD\|235370 PRK05244, PRK05244, Der GTPase activator; Provisional	Back alignment and domain information

>gnl\|CDD\|240578 cd12951, RRP7_Rrp7A, RRP7 domain ribosomal RNA-processing protein 7 homolog A (Rrp7A) and similar proteins	Back alignment and domain information

>gnl\|CDD\|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>gnl\|CDD\|219882 pfam08524, rRNA_processing, rRNA processing	Back alignment and domain information

>gnl\|CDD\|221275 pfam11861, DUF3381, Domain of unknown function (DUF3381)	Back alignment and domain information

>gnl\|CDD\|187751 cd09270, RNase_H2-B, Ribonuclease H2-B is a subunit of the eukaryotic RNase H complex which cleaves RNA-DNA hybrids	Back alignment and domain information

>gnl\|CDD\|216985 pfam02349, MSG, Major surface glycoprotein	Back alignment and domain information

>gnl\|CDD\|216985 pfam02349, MSG, Major surface glycoprotein	Back alignment and domain information

>gnl\|CDD\|220207 pfam09368, Sas10_Utp3_C, Sas10 C-terminal domain	Back alignment and domain information

>gnl\|CDD\|220818 pfam10595, UPF0564, Uncharacterized protein family UPF0564	Back alignment and domain information

>gnl\|CDD\|220121 pfam09135, Alb1, Alb1	Back alignment and domain information

>gnl\|CDD\|150240 pfam09495, DUF2462, Protein of unknown function (DUF2462)	Back alignment and domain information

>gnl\|CDD\|217884 pfam04086, SRP-alpha_N, Signal recognition particle, alpha subunit, N-terminal	Back alignment and domain information

>gnl\|CDD\|218336 pfam04935, SURF6, Surfeit locus protein 6	Back alignment and domain information

>gnl\|CDD\|219124 pfam06658, DUF1168, Protein of unknown function (DUF1168)	Back alignment and domain information

>gnl\|CDD\|185429 PTZ00074, PTZ00074, 60S ribosomal protein L34; Provisional	Back alignment and domain information

>gnl\|CDD\|173412 PTZ00121, PTZ00121, MAEBL; Provisional	Back alignment and domain information

>gnl\|CDD\|173412 PTZ00121, PTZ00121, MAEBL; Provisional	Back alignment and domain information

>gnl\|CDD\|173412 PTZ00121, PTZ00121, MAEBL; Provisional	Back alignment and domain information

>gnl\|CDD\|173412 PTZ00121, PTZ00121, MAEBL; Provisional	Back alignment and domain information

>gnl\|CDD\|173412 PTZ00121, PTZ00121, MAEBL; Provisional	Back alignment and domain information

>gnl\|CDD\|221641 pfam12569, NARP1, NMDA receptor-regulated protein 1	Back alignment and domain information

>gnl\|CDD\|221641 pfam12569, NARP1, NMDA receptor-regulated protein 1	Back alignment and domain information

>gnl\|CDD\|234017 TIGR02794, tolA_full, TolA protein	Back alignment and domain information

>gnl\|CDD\|234017 TIGR02794, tolA_full, TolA protein	Back alignment and domain information

>gnl\|CDD\|234017 TIGR02794, tolA_full, TolA protein	Back alignment and domain information

>gnl\|CDD\|217834 pfam03998, Utp11, Utp11 protein	Back alignment and domain information

>gnl\|CDD\|240388 PTZ00372, PTZ00372, endonuclease 4-like protein; Provisional	Back alignment and domain information

>gnl\|CDD\|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional	Back alignment and domain information

>gnl\|CDD\|240254 PTZ00069, PTZ00069, 60S ribosomal protein L5; Provisional	Back alignment and domain information

>gnl\|CDD\|240254 PTZ00069, PTZ00069, 60S ribosomal protein L5; Provisional	Back alignment and domain information

>gnl\|CDD\|220252 pfam09468, RNase_H2-Ydr279, Ydr279p protein family (RNase H2 complex component)	Back alignment and domain information

>gnl\|CDD\|215214 PLN02381, PLN02381, valyl-tRNA synthetase	Back alignment and domain information

>gnl\|CDD\|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional	Back alignment and domain information

>gnl\|CDD\|219563 pfam07767, Nop53, Nop53 (60S ribosomal biogenesis)	Back alignment and domain information

>gnl\|CDD\|219563 pfam07767, Nop53, Nop53 (60S ribosomal biogenesis)	Back alignment and domain information

>gnl\|CDD\|219913 pfam08576, DUF1764, Eukaryotic protein of unknown function (DUF1764)	Back alignment and domain information

>gnl\|CDD\|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>gnl\|CDD\|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>gnl\|CDD\|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>gnl\|CDD\|221654 pfam12589, WBS_methylT, Methyltransferase involved in Williams-Beuren syndrome	Back alignment and domain information

>gnl\|CDD\|218797 pfam05890, Ebp2, Eukaryotic rRNA processing protein EBP2	Back alignment and domain information

>gnl\|CDD\|235778 PRK06319, PRK06319, DNA topoisomerase I/SWI domain fusion protein; Validated	Back alignment and domain information

>gnl\|CDD\|235778 PRK06319, PRK06319, DNA topoisomerase I/SWI domain fusion protein; Validated	Back alignment and domain information

>gnl\|CDD\|240271 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional	Back alignment and domain information

>gnl\|CDD\|240271 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional	Back alignment and domain information

>gnl\|CDD\|240271 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional	Back alignment and domain information

>gnl\|CDD\|240271 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional	Back alignment and domain information

>gnl\|CDD\|220371 pfam09736, Bud13, Pre-mRNA-splicing factor of RES complex	Back alignment and domain information

>gnl\|CDD\|240317 PTZ00217, PTZ00217, flap endonuclease-1; Provisional	Back alignment and domain information

>gnl\|CDD\|217756 pfam03839, Sec62, Translocation protein Sec62	Back alignment and domain information

>gnl\|CDD\|115057 pfam06375, BLVR, Bovine leukaemia virus receptor (BLVR)	Back alignment and domain information

>gnl\|CDD\|115057 pfam06375, BLVR, Bovine leukaemia virus receptor (BLVR)	Back alignment and domain information

>gnl\|CDD\|235132 PRK03577, PRK03577, acid shock protein precursor; Provisional	Back alignment and domain information

>gnl\|CDD\|218941 pfam06217, GAGA_bind, GAGA binding protein-like family	Back alignment and domain information

>gnl\|CDD\|173412 PTZ00121, PTZ00121, MAEBL; Provisional	Back alignment and domain information

>gnl\|CDD\|173412 PTZ00121, PTZ00121, MAEBL; Provisional	Back alignment and domain information

>gnl\|CDD\|173412 PTZ00121, PTZ00121, MAEBL; Provisional	Back alignment and domain information

>gnl\|CDD\|173412 PTZ00121, PTZ00121, MAEBL; Provisional	Back alignment and domain information

>gnl\|CDD\|173412 PTZ00121, PTZ00121, MAEBL; Provisional	Back alignment and domain information

>gnl\|CDD\|234017 TIGR02794, tolA_full, TolA protein	Back alignment and domain information

>gnl\|CDD\|234017 TIGR02794, tolA_full, TolA protein	Back alignment and domain information

>gnl\|CDD\|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional	Back alignment and domain information

>gnl\|CDD\|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional	Back alignment and domain information

>gnl\|CDD\|240254 PTZ00069, PTZ00069, 60S ribosomal protein L5; Provisional	Back alignment and domain information

>gnl\|CDD\|215214 PLN02381, PLN02381, valyl-tRNA synthetase	Back alignment and domain information

>gnl\|CDD\|219572 pfam07780, Spb1_C, Spb1 C-terminal domain	Back alignment and domain information

>gnl\|CDD\|219572 pfam07780, Spb1_C, Spb1 C-terminal domain	Back alignment and domain information

>gnl\|CDD\|219868 pfam08496, Peptidase_S49_N, Peptidase family S49 N-terminal	Back alignment and domain information

>gnl\|CDD\|219913 pfam08576, DUF1764, Eukaryotic protein of unknown function (DUF1764)	Back alignment and domain information

>gnl\|CDD\|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>gnl\|CDD\|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>gnl\|CDD\|218612 pfam05501, DUF755, Domain of unknown function (DUF755)	Back alignment and domain information

>gnl\|CDD\|218612 pfam05501, DUF755, Domain of unknown function (DUF755)	Back alignment and domain information

>gnl\|CDD\|220838 pfam10659, Trypan_glycop_C, Trypanosome variant surface glycoprotein C-terminal domain	Back alignment and domain information

>gnl\|CDD\|222581 pfam14181, YqfQ, YqfQ-like protein	Back alignment and domain information

>gnl\|CDD\|220271 pfam09507, CDC27, DNA polymerase subunit Cdc27	Back alignment and domain information

>gnl\|CDD\|240271 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional	Back alignment and domain information

>gnl\|CDD\|240271 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional	Back alignment and domain information

>gnl\|CDD\|236978 PRK11778, PRK11778, putative inner membrane peptidase; Provisional	Back alignment and domain information

>gnl\|CDD\|218177 pfam04615, Utp14, Utp14 protein	Back alignment and domain information

>gnl\|CDD\|221275 pfam11861, DUF3381, Domain of unknown function (DUF3381)	Back alignment and domain information

>gnl\|CDD\|219621 pfam07890, Rrp15p, Rrp15p	Back alignment and domain information

>gnl\|CDD\|220611 pfam10169, Laps, Learning-associated protein	Back alignment and domain information

>gnl\|CDD\|215521 PLN02967, PLN02967, kinase	Back alignment and domain information

>gnl\|CDD\|218336 pfam04935, SURF6, Surfeit locus protein 6	Back alignment and domain information

>gnl\|CDD\|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3	Back alignment and domain information

>gnl\|CDD\|173412 PTZ00121, PTZ00121, MAEBL; Provisional	Back alignment and domain information

>gnl\|CDD\|173412 PTZ00121, PTZ00121, MAEBL; Provisional	Back alignment and domain information

>gnl\|CDD\|173412 PTZ00121, PTZ00121, MAEBL; Provisional	Back alignment and domain information

>gnl\|CDD\|236048 PRK07561, PRK07561, DNA topoisomerase I subunit omega; Validated	Back alignment and domain information

>gnl\|CDD\|218188 pfam04641, Rtf2, Replication termination factor 2	Back alignment and domain information

>gnl\|CDD\|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional	Back alignment and domain information

>gnl\|CDD\|214661 smart00435, TOPEUc, DNA Topoisomerase I (eukaryota)	Back alignment and domain information

>gnl\|CDD\|214661 smart00435, TOPEUc, DNA Topoisomerase I (eukaryota)	Back alignment and domain information

>gnl\|CDD\|219913 pfam08576, DUF1764, Eukaryotic protein of unknown function (DUF1764)	Back alignment and domain information

>gnl\|CDD\|219913 pfam08576, DUF1764, Eukaryotic protein of unknown function (DUF1764)	Back alignment and domain information

>gnl\|CDD\|218612 pfam05501, DUF755, Domain of unknown function (DUF755)	Back alignment and domain information

>gnl\|CDD\|218797 pfam05890, Ebp2, Eukaryotic rRNA processing protein EBP2	Back alignment and domain information

>gnl\|CDD\|220431 pfam09831, DUF2058, Uncharacterized protein conserved in bacteria (DUF2058)	Back alignment and domain information

>gnl\|CDD\|221712 pfam12687, DUF3801, Protein of unknown function (DUF3801)	Back alignment and domain information

>gnl\|CDD\|240271 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional	Back alignment and domain information

>gnl\|CDD\|217756 pfam03839, Sec62, Translocation protein Sec62	Back alignment and domain information

>gnl\|CDD\|221952 pfam13166, AAA_13, AAA domain	Back alignment and domain information

>gnl\|CDD\|151665 pfam11223, DUF3020, Protein of unknown function (DUF3020)	Back alignment and domain information

>gnl\|CDD\|151665 pfam11223, DUF3020, Protein of unknown function (DUF3020)	Back alignment and domain information

>gnl\|CDD\|240577 cd12950, RRP7_Rrp7p, RRP7 domain ribosomal RNA-processing protein 7 (Rrp7p) and similar proteins	Back alignment and domain information

>gnl\|CDD\|220413 pfam09805, Nop25, Nucleolar protein 12 (25kDa)	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		1650
KOG3595\|consensus		1395		100.0
COG5245		3164	DYN1 Dynein, heavy chain [Cytoskeleton]	100.0
PF12781		228	AAA_9: ATP-binding dynein motor region D5; PDB: 3V	100.0
PF03028		707	Dynein_heavy: Dynein heavy chain and region D6 of	100.0
PF12780		268	AAA_8: P-loop containing dynein motor region D4; I	100.0
PF12777		344	MT: Microtubule-binding stalk of dynein motor; Int	100.0
PF03028		707	Dynein_heavy: Dynein heavy chain and region D6 of	99.88
KOG3595\|consensus		1395		99.13
COG5245		3164	DYN1 Dynein, heavy chain [Cytoskeleton]	97.78
KOG0250\|consensus		1074		97.46
PF00004		132	AAA: ATPase family associated with various cellula	95.0
PRK14956		484	DNA polymerase III subunits gamma and tau; Provisi	94.61
cd00009		151	AAA The AAA+ (ATPases Associated with a wide varie	94.1
PRK14949		944	DNA polymerase III subunits gamma and tau; Provisi	93.86
PRK12323		700	DNA polymerase III subunits gamma and tau; Provisi	93.85
PF07728		139	AAA_5: AAA domain (dynein-related subfamily); Inte	93.67
PRK14951		618	DNA polymerase III subunits gamma and tau; Provisi	93.56
PRK14961		363	DNA polymerase III subunits gamma and tau; Provisi	92.5
TIGR03015		269	pepcterm_ATPase putative secretion ATPase, PEP-CTE	92.47
PRK07003		830	DNA polymerase III subunits gamma and tau; Validat	92.01
PRK07994		647	DNA polymerase III subunits gamma and tau; Validat	91.79
TIGR00635		305	ruvB Holliday junction DNA helicase, RuvB subunit.	91.64
PF12718		143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	91.54
TIGR02640		262	gas_vesic_GvpN gas vesicle protein GvpN. Members o	91.18
PRK04195		482	replication factor C large subunit; Provisional	91.1
PRK10865		857	protein disaggregation chaperone; Provisional	91.03
PRK14960		702	DNA polymerase III subunits gamma and tau; Provisi	90.99
PRK10884		206	SH3 domain-containing protein; Provisional	90.99
PRK13342		413	recombination factor protein RarA; Reviewed	90.73
PRK11034		758	clpA ATP-dependent Clp protease ATP-binding subuni	90.71
KOG1003\|consensus		205		90.7
PRK11331		459	5-methylcytosine-specific restriction enzyme subun	90.69
PF00931		287	NB-ARC: NB-ARC domain; InterPro: IPR002182 This is	90.6
PRK11637		428	AmiB activator; Provisional	90.59
COG1579		239	Zn-ribbon protein, possibly nucleic acid-binding [	90.54
PRK07764		824	DNA polymerase III subunits gamma and tau; Validat	90.53
KOG1969\|consensus		877		90.37
PRK14952		584	DNA polymerase III subunits gamma and tau; Provisi	90.21
PF00261		237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	90.14
PRK14962		472	DNA polymerase III subunits gamma and tau; Provisi	90.14
TIGR02639		731	ClpA ATP-dependent Clp protease ATP-binding subuni	89.91
COG2256		436	MGS1 ATPase related to the helicase subunit of the	89.86
PRK07940		394	DNA polymerase III subunit delta'; Validated	89.83
PF13401		131	AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S	89.77
TIGR03345		852	VI_ClpV1 type VI secretion ATPase, ClpV1 family. M	89.77
TIGR01241		495	FtsH_fam ATP-dependent metalloprotease FtsH. HflB(	89.76
PHA02544		316	44 clamp loader, small subunit; Provisional	89.59
PRK14957		546	DNA polymerase III subunits gamma and tau; Provisi	89.51
PRK07133		725	DNA polymerase III subunits gamma and tau; Validat	89.39
COG4942		420	Membrane-bound metallopeptidase [Cell division and	89.1
TIGR01650		327	PD_CobS cobaltochelatase, CobS subunit. This model	88.9
KOG0743\|consensus		457		88.9
CHL00176		638	ftsH cell division protein; Validated	88.81
TIGR02639		731	ClpA ATP-dependent Clp protease ATP-binding subuni	88.72
PLN00020		413	ribulose bisphosphate carboxylase/oxygenase activa	88.62
PRK14969		527	DNA polymerase III subunits gamma and tau; Provisi	88.4
PRK08691		709	DNA polymerase III subunits gamma and tau; Validat	88.25
COG3074		79	Uncharacterized protein conserved in bacteria [Fun	88.1
PRK14963		504	DNA polymerase III subunits gamma and tau; Provisi	88.1
PRK13341		725	recombination factor protein RarA/unknown domain f	88.08
PRK14959		624	DNA polymerase III subunits gamma and tau; Provisi	87.82
PRK05564		313	DNA polymerase III subunit delta'; Validated	87.72
PRK05342		412	clpX ATP-dependent protease ATP-binding subunit Cl	87.66
PRK00080		328	ruvB Holliday junction DNA helicase RuvB; Reviewed	87.59
TIGR03346		852	chaperone_ClpB ATP-dependent chaperone ClpB. Membe	87.16
PRK06645		507	DNA polymerase III subunits gamma and tau; Validat	86.97
PLN03025		319	replication factor C subunit; Provisional	86.35
CHL00195		489	ycf46 Ycf46; Provisional	86.14
PF15030		277	DUF4527: Protein of unknown function (DUF4527)	86.08
CHL00095		821	clpC Clp protease ATP binding subunit	86.01
PRK14958		509	DNA polymerase III subunits gamma and tau; Provisi	85.82
smart00382		148	AAA ATPases associated with a variety of cellular	85.49
TIGR01243		733	CDC48 AAA family ATPase, CDC48 subfamily. This sub	85.41
PRK05896		605	DNA polymerase III subunits gamma and tau; Validat	85.28
cd01129		264	PulE-GspE PulE/GspE The type II secretory pathway	85.2
PF05496		233	RuvB_N: Holliday junction DNA helicase ruvB N-term	85.07
PRK14948		620	DNA polymerase III subunits gamma and tau; Provisi	84.87
PRK10733		644	hflB ATP-dependent metalloprotease; Reviewed	84.84
PF05278		269	PEARLI-4: Arabidopsis phospholipase-like protein (	84.3
PRK03992		389	proteasome-activating nucleotidase; Provisional	84.07
PRK13948		182	shikimate kinase; Provisional	83.97
PRK12402		337	replication factor C small subunit 2; Reviewed	83.47
KOG2572\|consensus		498		83.36
cd07666		243	BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of S	83.11
COG1196		1163	Smc Chromosome segregation ATPases [Cell division	83.07
PRK11637		428	AmiB activator; Provisional	82.87
PF10473		140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	82.82
PRK05563		559	DNA polymerase III subunits gamma and tau; Validat	82.76
PRK14964		491	DNA polymerase III subunits gamma and tau; Provisi	82.75
COG2607		287	Predicted ATPase (AAA+ superfamily) [General funct	82.64
PHA02244		383	ATPase-like protein	82.48
KOG0731\|consensus		774		82.22
PRK00440		319	rfc replication factor C small subunit; Reviewed	81.97
COG1122		235	CbiO ABC-type cobalt transport system, ATPase comp	81.72
COG1579		239	Zn-ribbon protein, possibly nucleic acid-binding [	81.72
PRK08451		535	DNA polymerase III subunits gamma and tau; Validat	81.64
PTZ00454		398	26S protease regulatory subunit 6B-like protein; P	81.62
KOG0804\|consensus		493		81.38
PF01637		234	Arch_ATPase: Archaeal ATPase; InterPro: IPR011579	81.35
TIGR01242		364	26Sp45 26S proteasome subunit P45 family. Many pro	81.3
KOG2572\|consensus		498		81.29
COG3973		747	Superfamily I DNA and RNA helicases [General funct	81.19
PRK13949		169	shikimate kinase; Provisional	81.07
PRK10884		206	SH3 domain-containing protein; Provisional	81.01
PF08317		325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	80.93
COG0714		329	MoxR-like ATPases [General function prediction onl	80.83
PRK14954		620	DNA polymerase III subunits gamma and tau; Provisi	80.82
PF07726		131	AAA_3: ATPase family associated with various cellu	80.76
PRK05057		172	aroK shikimate kinase I; Reviewed	80.33
PRK05707		328	DNA polymerase III subunit delta'; Validated	80.09

>KOG3595\|consensus	Back alignment and domain information

Probab=100.00  E-value=4.7e-114  Score=1178.45  Aligned_cols=974  Identities=36%  Similarity=0.594  Sum_probs=819.7

Q ss_pred             CCccccCCHHHHHHHHHHHHHHHhccCCCCCcceeehHHHHHHHHHHHHHhcCCCCceEEEecCCchhhhHHHHHHHhcC
Q psy4724          21 LVYDEIDNLDLLTEKINQYIVDYNTQNSNKPIDIVTFLYIIQHISRLCRILQQPKGHAMLITIGGSGAAEVTKLATFMNE  100 (1650)
Q Consensus        21 ~~Y~~~~~~~~l~~~l~~~l~~yN~~~~~~~m~lVlF~~ai~Hv~rI~Ril~~p~G~alLvGvgGSGrqSLtrLAafi~~  100 (1650)
                      +.|+++.+++.++.++..++..|| ......|++|||.+|++|++||+|||++|+||++|||+||||||||+|+++|+++
T Consensus       412 ~~y~~~~~~~~l~~~~~~~l~~~~-~~~~~~~~lvlf~~~~~h~~ri~ril~~~~g~~llvgv~g~gkqsl~r~~~~~~~  490 (1395)
T KOG3595|consen  412 KIYEEVLSVELLRGVLEAYLKQFN-IEEIRPMHLVLFRDAIEHVLRIDRILRQPRGHALLVGVGGSGKQSLTRLAAFING  490 (1395)
T ss_pred             cccCchHhHHHHHHHHHHHHHHHh-hhccCCCceeeeHHHhhhhhhhHHHhcCCCccEEEeecCCCCcccHHHHHHhhcc
Confidence            799999999999999999999999 3467889999999999999999999999999999999999999999999999999


Q ss_pred             CceEEEEEcccCCcchhHHHHHHHHHHhccCCCCCEEEEEecCCcCchhhHHHHHHHHhhhhhccccccccccCCCCCcc
Q psy4724         101 YVLFEIEILKTYGLTDWRDDLCRLMKKSGGKDAKPMTFLFSDTQIQNEVFVEHINMLLNTARKRYNMDLTKSYGVCPSMS  180 (1650)
Q Consensus       101 ~~~fqIeitk~Yg~~~f~eDLk~l~~~~g~~~~k~~vFl~tD~qI~~E~fLedIN~lL~tge~~~~~~vp~l~~~v~~l~  180 (1650)
                      |.+|||+++++|+..+|++||+.++++|| .+|+.+||+++|+||.+|+|||++|++|++||      +||+|+.     
T Consensus       491 ~~~fq~~~~~~y~~~~~~~dl~~~~r~~g-~~~~~~~f~~~~~~i~~e~fle~ln~ll~~ge------vp~lf~~-----  558 (1395)
T KOG3595|consen  491 LSVFQIEITRSYNIEDFREDLKAILRKAG-LKNKETVFILTDSQIKDESFLEDLNNLLASGE------VPNLFTG-----  558 (1395)
T ss_pred             ccceeeeccccCcHHHHHHHHHHHHHHhc-cCCCceEEeechHHHHHHHHHHHHHHHHhCCC------CCCccch-----
Confidence            99999999999999999999999999999 89999999999999999999999999999999      9999999     


Q ss_pred             chhhhhhhhcCcchHHhhhchhHHHHHHHHHHHhhhhccCCCCccchhHhHHHHHHHHHHHHhcCCccchhhHHHhhHHH
Q psy4724         181 IVHHLEDLNASPLVYDEIDNLDLLTEKINQYIVDYNTQNSNKPIDIVTFLYIIQHISRLCRILQQPKGHAMLITIGTYRV  260 (1650)
Q Consensus       181 ~~~~Le~~~~~~~v~~E~~~~~~l~e~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~f~  260 (1650)
                                     +|.   +.+........    +....... + +..                       +.+.||+
T Consensus       559 ---------------de~---~~~~~~~~~~~----~~~~~~~~-~-s~e-----------------------~~~~~f~  591 (1395)
T KOG3595|consen  559 ---------------DEL---DEIKMELAGEM----GEEAKLIL-D-SRE-----------------------NLYLFFI  591 (1395)
T ss_pred             ---------------HHH---HHHHHHHHHHh----hhhccccC-c-cHH-----------------------HHHHHHH
Confidence                           777   33222111111    01100111 1 222                       6788999


Q ss_pred             HHHhhhccchhhhcccchhhh---hhcccccccccceeEeeeccccCCCchhHHHHHHHHHHHHHhhcCCCCcHHHHHHH
Q psy4724         261 ERKIALGRVHIIRTEKEIDDA---RMMYIPVSKHSSVLFFCCAELSNIDPMYQYSLNWFINLYVQSIEGSEKTDQLDKRL  337 (1650)
Q Consensus       261 ~~~~~l~~lhivlt~s~I~~~---R~~y~PvA~r~S~Ly~~~~~Ls~id~mYqfSl~~F~~lf~~~l~~s~~~~~l~~Rl  337 (1650)
                      .+++  .++|+++++++++++   |.+-+|      ++++||+            ++||.     .    |+.+++..  
T Consensus       592 ~~~~--~~l~~vl~~~~~g~~~~~r~~~~p------al~~~~~------------i~w~~-----~----w~~~al~~--  640 (1395)
T KOG3595|consen  592 FRVR--RNLHVVLSVSPVGDAFRLRARKFP------ALVNRCT------------IDWFD-----S----WPTEALLS--  640 (1395)
T ss_pred             HHHH--HhcceeEEeCchhhHHHHHHHhCh------hhhccch------------hhhcc-----c----CCHHHHHH--
Confidence            9999  999999999999998   777888      9999999            99997     3    99999887  


Q ss_pred             HHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhhhchhhhhHhhHHHHhhhcchhhhhhchhhhHHHHHHHHHhhhhcCCCC
Q psy4724         338 KILMNHFTYSIYKNICRSLFEDHKLVFSFVLCTGQGEIAKSYIDEGLKKGLWIVLQNCHVAKSWMKELERICAEVIVPAN  417 (1650)
Q Consensus       338 ~~l~~~lt~~vy~~v~r~Lfe~~kllfs~lL~~~~~~~a~~~i~~~~~~~~w~~l~~~~~~~~~~~~l~~~~~~~~~~~~  417 (1650)
                        +.+.+....            .+.+                 ...+.+.   +..+..  .++..+.          .
T Consensus       641 --v~~~~l~~~------------~~~~-----------------~~~~~~~---i~~~~~--~~~~~~~----------~  674 (1395)
T KOG3595|consen  641 --VAEEFLASQ------------DILS-----------------PSEKRGA---ISLTMI--LFHETVL----------E  674 (1395)
T ss_pred             --HHHHHHhhh------------cCCC-----------------cccccch---hhhhhh--hhhhhHH----------H
Confidence              555542110            0000                 0000000   111110  0111111          1


Q ss_pred             chHHHHHHhccCCCCCCCchhhccchhhhccCchhhHHHHhhhhcCCCCCCccccccccchhHHHHHHHHHhhHHHHHHH
Q psy4724         418 THQEFRLWLTSYPSTTFPVSVLENGIKMIIEPPKGIKNNLLRSYTNDPINSDDFYNDSKNVAAWHKLLFSLCLFHAVVQE  497 (1650)
Q Consensus       418 ~~~~f~~~l~~~~~~~~p~~~le~~lk~l~e~~~~~k~~ll~~~~~d~~~~~~~~~~~~~~~~f~kLL~~l~~~~~~~~~  497 (1650)
                      ....+.....++.+ .+|.++++.     +   ..|+ .++..++                             ..+...
T Consensus       675 ~~~~~~~~~~r~~~-~tp~~~l~~-----i---~~f~-~ll~~k~-----------------------------~~~~~~  715 (1395)
T KOG3595|consen  675 SFASYFDRLSRHNY-VTPTSYLEF-----I---GTFK-KLLKEKR-----------------------------SEVRLR  715 (1395)
T ss_pred             HhHHHHHhcCceee-cCchhHHHH-----H---HHHH-HHHHHHH-----------------------------HHHHHH
Confidence            22333444555666 777777776     3   4455 4444332                             122222


Q ss_pred             HHHhCCCCCCCCcccccchhHHHHHHHHHHHhccCCCChhhhhhhhhhHHHhhhhccCCccccccccchHHHHHHHHHHH
Q psy4724         498 RKQYGPLGWNIPYEFNLSDLNISMKQLQMFLNDYTTIPFDALIYLTVDYKYTSQMRQKNPFTLTISRTTQIIEDFMLCIK  577 (1650)
Q Consensus       498 r~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~ip~~~l~~l~~~l~~~~~~~~~~~~~~~i~~g~~~~e~l~~~i~  577 (1650)
                      +.         ++..|++++..+..++..+..++.        .+.+.+..+...+..  ....+..+..+.+.....+.
T Consensus       716 ~~---------r~~~gl~kl~~a~~~v~~l~~~l~--------~~~~el~~~~~~a~~--~l~~i~~~~~~~e~~k~~v~  776 (1395)
T KOG3595|consen  716 KL---------RLELGLDKLKEAGEQVAGLQKELA--------ALQPELQVKSKEAND--VLAKILKETQAAEAQKEAVL  776 (1395)
T ss_pred             HH---------HHHhhhHHhhHHHHHHHHHHHHHH--------HhhHHHHHHhHHHHH--HHHHHHhhHHHHHHHHHHHH
Confidence            22         556678888888888877766654        445554444331110  01111111111111111111


Q ss_pred             hcceehhccchhhHHHHHHHHHHHHHhcCCCCcchHHHhhhhcCCCCCcccccc---cchhhhhhcCCcccccccccccc
Q psy4724         578 KGLWIVLQNCHVAKSWMKELERICAEVIVPANTHQEFRLWLTSYPSTTFPVSVL---ENGIKMIIEPPKGIKNNLFRSYT  654 (1650)
Q Consensus       578 ~g~wvllqn~~la~~~~~e~e~~l~~~~~p~~~~a~~~Lw~t~~~~~~~pi~~l---~~~vk~v~E~~~glk~~l~~~~~  654 (1650)
                      ...-........+.+.+.+++++++++. |+++.|..++ .|+++.++.+++++   |.+|+.+||..+-+...    + 
T Consensus       777 ~~e~~~~~~~~~~~~~k~~v~~~l~~a~-P~leeA~aal-~ti~k~~l~~lks~~~PP~~Vk~~meavciLlg~----~-  849 (1395)
T KOG3595|consen  777 EDEKKAQEKAGLIQAQKAEVEEDLEEAE-PALEEASAAL-STIKKADLSELKSMKNPPHAVKLVMEAVCILLGR----L-  849 (1395)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhh-HHHHHHHHHH-hcCChhhHHHHHhcCCCcHHHHHHHHHHHHHhcc----c-
Confidence            1000111122356778889999999998 9999999999 99999999999999   88999999954433221    0 


Q ss_pred             CCCCCCcchHhhhhhhhhhHHHHHHHhhhhHHHHHHHhhCCCCCCCCccCCcccHHHHHHHHH-hhhcCCCCCchh--hH
Q psy4724         655 NDPINSDDFYNDSKNVAAWHKLLFSLCLFHAVVQERKQYGPLGWNIPYEFNLSDLNISMKQLQ-MFLNDYTTIPFD--AL  731 (1650)
Q Consensus       655 ~~~~~~~~~w~~~k~~l~~~~~l~~L~~fHavv~ER~kf~~lG~ni~y~Fn~sDl~~~~~~l~-~~l~~~~~~p~~--~l  731 (1650)
                          ...++|...+.++....|+..+..          |++  .+++..        +.+.+. .|+.+++|.|..  ..
T Consensus       850 ----~~~~w~~~~~~~~~~~~fl~~l~~----------~~~--~~i~~~--------~~k~i~~~~~~~p~f~~~~v~~~  905 (1395)
T KOG3595|consen  850 ----SSTDWKNISKLLLSDDFFLIILRE----------FDK--DEIPEE--------IMKLIKKFYFQNPDFVPEKVNRA  905 (1395)
T ss_pred             ----cCCChHHHHHHhhcccHHHHHhhc----------Ccc--ccChHH--------HHHHHHHhhcCCccCCHHHHHhh
Confidence                123456666666666668888888          888  888888        999995 799999999972  22


Q ss_pred             hHhhcCccchhhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4724         732 IYLTASIPFQVLAMEVYDRVIKIVGPKKAKLAEAEADYAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQI  811 (1650)
Q Consensus       732 ~~~~~s~a~Wv~A~~~Y~~v~~~v~P~~~~l~~~e~~l~~~~~~L~~~~~~l~~~~~~l~~l~~~~~~~~~e~~~l~~~~  811 (1650)
                      +.+.++.+.||.|+..|+++++.|+|++..++.++..+..+++.+++++.++++++++++.++++|+....+++.++.++
T Consensus       906 s~a~~~l~~wv~a~~~~~kv~~~v~p~~~~~~~~e~~~~~~~~~l~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~  985 (1395)
T KOG3595|consen  906 SLACEGLCLWVIAIDKYSKVLKVVEPKRQELARLEAELKAAMKELEEKSAELQDLEEKLQRLKDEYEQLIAEKQELEEDM  985 (1395)
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            22334444999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhhchhhccHHHHHHHHHHHHhhchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhhhcCCCCCC
Q psy4724         812 ELCKQKLERAEKLIGGLGGEKTRWSEASANLSKALVNCIGDILICAGIITYLGAFTVDFRNDLIEQWKSLSSQEQMPFTL  891 (1650)
Q Consensus       812 ~~~~~rl~ra~~Li~~L~~E~~rW~~~~~~~~~~~~~l~Gd~ll~aa~i~Y~G~f~~~~R~~l~~~w~~~~~~~~i~~~~  891 (1650)
                      ..|+.++.||.+|+.+|++|+.||...++.+..+...++||+|++|++++|+|+|+..+|..++..|...+....+ +.+
T Consensus       986 ~~~~~k~~~a~~Li~~Ls~e~~rW~~~~~~~~~~~~~l~gd~ll~~~~~~y~g~~~~~~r~~~~~~~~~~~~~~~~-~~~ 1064 (1395)
T KOG3595|consen  986 DACELKLLRAEELIQGLSGEKERWSETSEQFSKQYSRLVGDVLLSSAFVAYLGAFDQLYRQSLLRLWESLCTQLKI-VLS 1064 (1395)
T ss_pred             HHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhhhhHHHHhhhhhhhhccccCHHHHHHHHHHhHHhcCcccc-ccc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999999 999


Q ss_pred             CCccccccCCHHHHHHHHhCCCCCCchhhhhhHHhhcCCCcccccCchhHHHHHHHHhccCC-cEEEecCChhHHHHHHH
Q psy4724         892 SFSMITTLGDAVKIRSWNINGLPVDNFSIENGIILFNSNKWPLLIDPQGQANKWLKNVEKGN-LSVVKLTDATLLRTLER  970 (1650)
Q Consensus       892 ~~~~~~~l~~~~~~~~w~~~gLP~D~~s~enaii~~~~~r~PLlIDPq~qa~~wik~~~~~~-l~v~~~~~~~~~~~le~  970 (1650)
                      ++++..+++++.++..|...|+|.|.+|+|||++++++.|||++||||+|++.||+++++.+ +.++++++..|++.+|+
T Consensus      1065 ~~~~~~~l~~~~~~~~w~~~~lp~~~~s~en~~i~~~~~~~~l~id~q~q~~~~i~~~~~~~~~~~i~~~~~~~l~~le~ 1144 (1395)
T KOG3595|consen 1065 NFSLISMLVDPTEILNWNIRGLPADDLSIENGIIITNSNRWPLIIDPQGQANEWIKNKESENKLQVISFNEKEFLRQLEN 1144 (1395)
T ss_pred             ccchHhhcCchHhhcchhhccCcccccchhHHHHHhccCCCceeecchhhhhHhHhhhhhhcccceeeccchhHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999866 99999999999999999


Q ss_pred             HHHcCCeEEEecccccccccchHHHhHHHHhhcCeEEEEecCeeeeecCCeeEEEEeCCCCCCCCcccccceEEEEeeeC
Q psy4724         971 AIRTGTAVLLENIQETIDSSLEPVLLKSYYKIQNQLIMTLNNKEIEYNIKFRLYITTRLKNPHYIPEILTKITLINFMIT 1050 (1650)
Q Consensus       971 ai~~G~~vlie~v~e~~dp~l~p~L~~~~~~~~~~~~i~ig~~~i~~~~~FrL~l~Tk~~np~~~pe~~~~~tvinf~vt 1050 (1650)
                      |+++|.|++++|+.|.+||.++|++.+.+++.||...+++||++++++++|++|++|+++||||.|++++++++|||++|
T Consensus      1145 a~~~g~~il~~~~~e~~d~~l~~ll~~~~~~~g~~~~~~~gd~~~~~~~~f~~~~~t~~~~~~~~p~~~~~~~~v~f~~t 1224 (1395)
T KOG3595|consen 1145 ALRFGEPVLIEDVNEELDPALEPLLLKETFKQGGRVLIKLGDKEIDLNPDFRLYITTKLRNPHYLPELSARVTLVNFTVT 1224 (1395)
T ss_pred             HhccCCceeccchhhhhchhhhhhcccceeeccCeEeeecCceeeecCCCeeEEEeecccCcccChhhhhceeEEEeEec
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhHHHHHHHHHHH
Q psy4724        1051 PQGLQNQLLGIVVAKEKPDLETKKNELIIESANNKKILKETEDKILEVLSSSQGNILEDESAVQILTSSKVLSAEITAKQ 1130 (1650)
Q Consensus      1051 ~~gLe~qlL~~vv~~e~peLe~~~~~l~~~~~~~k~~L~~lEd~lL~~L~~s~g~iLdd~~li~~L~~sK~~~~~i~~~l 1130 (1650)
                      ..|+++|+|+.++..|+|+++.++..++...++.+.+++++|+.+|..|+.|+|++++|++++.+|+.+|.++. |++++
T Consensus      1225 ~~~l~~qll~~v~~~e~~~~~~~~~~l~~~~~~~~~~lk~le~~lL~~l~~s~~~~l~~~~~~~~l~~~K~~~~-i~~k~ 1303 (1395)
T KOG3595|consen 1225 PSGLEDQLLGSVVAIERPDLEEERSDLIKLQAEIKRQLKELEDRLLERLSSSEGNILEDDELIVTLESSKVEAA-IKEKL 1303 (1395)
T ss_pred             hhHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccccHHHHHHHHHHHHHHH-HHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999 99999


Q ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhcCCcccccCHHHHHHHHHHhhhcccCcccHHHHHHHHHHHHHHHH
Q psy4724        1131 EISSRTEKEIDDARMMYIPVSKHSSVLFFCCAELSNIDPMYQYSLNWFINLYVQSIEGSEKTDQLDKRLKILMNHFTYSI 1210 (1650)
Q Consensus      1131 ~~~~~~~~~i~~~r~~y~pvA~~~s~lyf~l~~L~~i~~mYq~Sl~~f~~lf~~~i~~~~~~~~~~~r~~~l~~~~t~~~ 1210 (1650)
                      .+++.++.+|+++|+.|+|+|.|++.+||++++|+.++|||||||.||+.+|..++..   +++..+|+.+|++++|+.+
T Consensus      1304 ~e~~~~e~~i~~~r~~y~p~a~~~~~l~~~~~~l~~i~~myq~sl~~f~~~f~~~~~~---~~~~~~r~~~l~~~~~~~v 1380 (1395)
T KOG3595|consen 1304 EEAEETEKEIDAAREQYRPLAIHSSILYFSISDLANIHPMYQYSLKWFLNLFHVVIER---SESLSKRLANLIDSLTYSV 1380 (1395)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHhHhhhheehhhccccChHHHHHHHHHHHHHHHHHhc---cccHHHHHHHHHHHhHHHH
Confidence            9999999999999999999999999999999999999999999999999999999998   6789999999999999999


Q ss_pred             HHHHhhhccccCcch
Q psy4724        1211 YKNICRSLFEDHKLV 1225 (1650)
Q Consensus      1211 y~~v~r~Lfe~~kll 1225 (1650)
                      |.|+|||||++||++
T Consensus      1381 ~~~~~r~l~e~dkl~ 1395 (1395)
T KOG3595|consen 1381 YCNVSRGLFEKDKLL 1395 (1395)
T ss_pred             HHHHHHHhhhhcccC
Confidence            999999999999985

>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]	Back alignment and domain information

>PF12781 AAA_9: ATP-binding dynein motor region D5; PDB: 3VKG_A 3VKH_C 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A	Back alignment and domain information

>PF03028 Dynein_heavy: Dynein heavy chain and region D6 of dynein motor; InterPro: IPR004273 Dynein is a multisubunit microtubule-dependent motor enzyme that acts as the force generating protein of eukaryotic cilia and flagella	Back alignment and domain information

>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases	Back alignment and domain information

>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases	Back alignment and domain information

>PF03028 Dynein_heavy: Dynein heavy chain and region D6 of dynein motor; InterPro: IPR004273 Dynein is a multisubunit microtubule-dependent motor enzyme that acts as the force generating protein of eukaryotic cilia and flagella	Back alignment and domain information

>KOG3595\|consensus	Back alignment and domain information

>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]	Back alignment and domain information

>KOG0250\|consensus	Back alignment and domain information

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport	Back alignment and domain information

>PRK14956 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold	Back alignment and domain information

>PRK14949 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>PRK12323 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []	Back alignment and domain information

>PRK14951 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>PRK14961 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily	Back alignment and domain information

>PRK07003 DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>PRK07994 DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit	Back alignment and domain information

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells	Back alignment and domain information

>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN	Back alignment and domain information

>PRK04195 replication factor C large subunit; Provisional	Back alignment and domain information

>PRK10865 protein disaggregation chaperone; Provisional	Back alignment and domain information

>PRK14960 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>PRK10884 SH3 domain-containing protein; Provisional	Back alignment and domain information

>PRK13342 recombination factor protein RarA; Reviewed	Back alignment and domain information

>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional	Back alignment and domain information

>KOG1003\|consensus	Back alignment and domain information

>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional	Back alignment and domain information

>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []	Back alignment and domain information

>PRK11637 AmiB activator; Provisional	Back alignment and domain information

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]	Back alignment and domain information

>PRK07764 DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>KOG1969\|consensus	Back alignment and domain information

>PRK14952 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells	Back alignment and domain information

>PRK14962 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA	Back alignment and domain information

>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]	Back alignment and domain information

>PRK07940 DNA polymerase III subunit delta'; Validated	Back alignment and domain information

>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B	Back alignment and domain information

>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family	Back alignment and domain information

>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH	Back alignment and domain information

>PHA02544 44 clamp loader, small subunit; Provisional	Back alignment and domain information

>PRK14957 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>PRK07133 DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]	Back alignment and domain information

>TIGR01650 PD_CobS cobaltochelatase, CobS subunit	Back alignment and domain information

>KOG0743\|consensus	Back alignment and domain information

>CHL00176 ftsH cell division protein; Validated	Back alignment and domain information

>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA	Back alignment and domain information

>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional	Back alignment and domain information

>PRK14969 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>PRK08691 DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]	Back alignment and domain information

>PRK14963 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed	Back alignment and domain information

>PRK14959 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>PRK05564 DNA polymerase III subunit delta'; Validated	Back alignment and domain information

>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional	Back alignment and domain information

>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed	Back alignment and domain information

>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB	Back alignment and domain information

>PRK06645 DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>PLN03025 replication factor C subunit; Provisional	Back alignment and domain information

>CHL00195 ycf46 Ycf46; Provisional	Back alignment and domain information

>PF15030 DUF4527: Protein of unknown function (DUF4527)	Back alignment and domain information

>CHL00095 clpC Clp protease ATP binding subunit	Back alignment and domain information

>PRK14958 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>smart00382 AAA ATPases associated with a variety of cellular activities	Back alignment and domain information

>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily	Back alignment and domain information

>PRK05896 DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP)	Back alignment and domain information

>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair	Back alignment and domain information

>PRK14948 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>PRK10733 hflB ATP-dependent metalloprotease; Reviewed	Back alignment and domain information

>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4	Back alignment and domain information

>PRK03992 proteasome-activating nucleotidase; Provisional	Back alignment and domain information

>PRK13948 shikimate kinase; Provisional	Back alignment and domain information

>PRK12402 replication factor C small subunit 2; Reviewed	Back alignment and domain information

>KOG2572\|consensus	Back alignment and domain information

>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7	Back alignment and domain information

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>PRK11637 AmiB activator; Provisional	Back alignment and domain information

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]	Back alignment and domain information

>PRK05563 DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>PRK14964 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]	Back alignment and domain information

>PHA02244 ATPase-like protein	Back alignment and domain information

>KOG0731\|consensus	Back alignment and domain information

>PRK00440 rfc replication factor C small subunit; Reviewed	Back alignment and domain information

>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]	Back alignment and domain information

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]	Back alignment and domain information

>PRK08451 DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional	Back alignment and domain information

>KOG0804\|consensus	Back alignment and domain information

>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP	Back alignment and domain information

>TIGR01242 26Sp45 26S proteasome subunit P45 family	Back alignment and domain information

>KOG2572\|consensus	Back alignment and domain information

>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]	Back alignment and domain information

>PRK13949 shikimate kinase; Provisional	Back alignment and domain information

>PRK10884 SH3 domain-containing protein; Provisional	Back alignment and domain information

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []	Back alignment and domain information

>COG0714 MoxR-like ATPases [General function prediction only]	Back alignment and domain information

>PRK14954 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model	Back alignment and domain information

>PRK05057 aroK shikimate kinase I; Reviewed	Back alignment and domain information

>PRK05707 DNA polymerase III subunit delta'; Validated	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		1650
3vkh_A		3367	X-Ray Structure Of A Functional Full-Length Dynein		1e-61
3vkg_A		3245	X-Ray Structure Of An Mtbd Truncation Mutant Of Dyn		2e-61
3qmz_A		2486	Crystal Structure Of The Cytoplasmic Dynein Heavy C		2e-23
4ai6_A		2695	Dynein Motor Domain - Adp Complex Length = 2695		5e-23

>pdb|3VKH|A Chain A, X-Ray Structure Of A Functional Full-Length Dynein Motor Domain Length = 3367

Back alignment and structure

Iteration: 1

Score = 235 bits (600), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 188/756 (24%), Positives = 350/756 (46%), Gaps = 75/756 (9%) Query: 746 EVYDRVIKIVGPKKAKLAEAEADYAVQMEKLNSKRA---QLATVLGKLQALRDELA---- 798 E +R K GP K A A+ Y+ ++++ R QL +L+ +DE+ Sbjct: 2102 ETVNRASKACGPL-VKWATAQTYYSEILDRIKPLREEVEQLENAANELKLKQDEIVATIT 2160 Query: 799 --QKS------------KDKKELEDQIELCKQKLERAEKLIGGLGGEKTRWSEASANLSK 844 +KS ++ ++++ + K K++R+ L+ L E+ RW + S N + Sbjct: 2161 ALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQSENFNT 2220 Query: 845 ALVNCIGDILICAGIITYLGAFTVDFRNDLIEQWKSLSSQEQMPFTLSFSMITTLGDAVK 904 + +GD+++ + + Y+G F +FR DL+ +W + F S+ + L + Sbjct: 2221 QMSTVVGDVVLASAFLAYIGFFDQNFRTDLMRKWMIRLDSVGIKFKSDLSVPSFLSKPEE 2280 Query: 905 IRSWNINGLPVDNFSIENGIILFNSNKWPLLIDPQGQANKWLKN-VEKGNLSVVKLTDAT 963 +W+ N LP D IEN I+L N++PL+IDP GQA ++L N ++ D++ Sbjct: 2281 RLNWHANSLPSDELCIENAIMLKRFNRYPLVIDPSGQAMEFLMNQYADKKITKTSFLDSS 2340 Query: 964 LLRTLERAIRTGTAVLLENIQETIDSSLEPVLLKSYYKIQNQLIMTLNNKEIEYNIKFRL 1023 ++ LE A+R G +L++++ E ID L PVL K K ++++ L +++++++ F + Sbjct: 2341 FMKNLESALRFGCPLLVQDV-ENIDPVLNPVLNKEIRKKGGRILIRLGDQDVDFSPSFMI 2399 Query: 1024 YITTRLKNPHYIPEILTKITLINFMITPQGLQNQLLGIVVAKEKPDLETKKNELIIESAN 1083 ++ TR H+ P++ +++T +NF +TP LQ+Q L + E+PD K+++L+ Sbjct: 2400 FLFTRDPTAHFTPDLCSRVTFVNFTVTPSSLQSQCLHEALKTERPDTHKKRSDLLKIQGE 2459 Query: 1084 NKKILKETEDKILEVLSSSQGNILEDESAVQILTSSKVLSAEITAKQEISSRTEKEIDDA 1143 + L+ E +L LS + GNIL+D+S + L + K + EI K E + +EI + Sbjct: 2460 FQVKLRILEKSLLNALSQASGNILDDDSVISTLETLKKETTEIALKVEETETVMQEISEV 2519 Query: 1144 RMMYIPVSKHSSVLFFCCAELSNIDPMYQYSLNWFINL-YVQSIEGSEKTDQLD--KRLK 1200 +Y P++ S ++F ELS +YQ+SL F+++ Y D+ D +RL Sbjct: 2520 SALYNPMALSCSRVYFAMEELSQFH-LYQFSLRAFLDIFYNLLNNNPNLVDKKDPNERLV 2578 Query: 1201 ILMNHFTYSIYKNICRSLFEDHKLVFSFVLC-TGIQRSNETLDETLFKYFLTGSIDLT-- 1257 L + + R+L D KL F+ L ++ ++ ++E+ + + L G +LT Sbjct: 2579 YLSKDIFSMTFNRVTRTLLNDDKLTFALQLTIISVKGTSNEIEESEWDFLLKGGDNLTSI 2638 Query: 1258 ------MDS--PNPSPSWLSNKTWTDIIQISKLPQLGDLKASVKTKNSEWKSYYDSKT-- 1307 +DS WL I ++P L ++ +S+WK ++ Sbjct: 2639 KETIPQLDSLLSTTQQKWL-------ICLRQQVPSFSKLVDHIQQNSSDWKQFFGKDQVG 2691 Query: 1308 ----PEKERVSYVQ--DKSDICVLNILKII-----RPDKVIQGIQIYVSKNLGEQYIVSP 1356 PE V+ Q ++ V N KI+ D+V+Q +V GE ++ + Sbjct: 2692 EPIIPESWIVAQAQLSNQQSTIVSNFRKILLMKAFHSDRVLQYSHSFVCSVFGEDFLNTQ 2751 Query: 1357 PFSLKQSYD-DSNCCTPLIFILSAGSDPMDLLLKFNSDMNAAKPLTVSLGQGIQSYIQSL 1415 + + + +PL+ G D + L + L + +S+ Sbjct: 2752 ELDMANIVEKEVKSSSPLLLCSVPGYDA----------SSKVDDLALQLHKQYKSFAI-- 2799 Query: 1416 PLNNTPEIFGLHENADLTKNFNETRLVLGNILLCAQ 1451 +PE F L E + + T ++L NI L Q Sbjct: 2800 ---GSPEGFELAEKSIYAAAKSGTWVLLKNIHLAPQ 2832

PyMOL of 3vkh

>pdb|3VKG|A Chain A, X-Ray Structure Of An Mtbd Truncation Mutant Of Dynein Motor Domain Length = 3245

Back alignment and structure

>pdb|3QMZ|A Chain A, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain Motor Domain Length = 2486

Back alignment and structure

>pdb|4AI6|A Chain A, Dynein Motor Domain - Adp Complex Length = 2695

Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		1650
3vkg_A		3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	100.0
4akg_A		2695	Glutathione S-transferase class-MU 26 kDa isozyme	100.0
3vkg_A		3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	100.0
4akg_A		2695	Glutathione S-transferase class-MU 26 kDa isozyme	100.0
2rr7_A		155	Dynein heavy chain 9; microtubule-binding, stalk h	99.49
3err_A		536	Fusion protein of microtubule binding domain from	99.37
1d2n_A		272	N-ethylmaleimide-sensitive fusion protein; hexamer	95.78
1jbk_A		195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	95.26
2chg_A		226	Replication factor C small subunit; DNA-binding pr	95.09
2p65_A		187	Hypothetical protein PF08_0063; CLPB, malaria, str	95.06
2qz4_A		262	Paraplegin; AAA+, SPG7, protease, ADP, structural	94.55
3h4m_A		285	Proteasome-activating nucleotidase; ATPase, PAN, A	93.86
1r6b_X		758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	93.03
1lv7_A		257	FTSH; alpha/beta domain, four helix bundle, hydrol	92.88
2eqb_B		97	RAB guanine nucleotide exchange factor SEC2; coile	92.77
3vfd_A		389	Spastin; ATPase, microtubule severing, hydrolase;	92.2
3b9p_A		297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	92.09
2x8a_A		274	Nuclear valosin-containing protein-like; nuclear p	91.95
3d8b_A		357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	91.89
1ic2_A		81	Tropomyosin alpha chain, skeletal muscle; alpha-he	91.55
3syl_A		309	Protein CBBX; photosynthesis, rubisco activase, AA	91.4
2v1u_A		387	Cell division control protein 6 homolog; DNA repli	91.39
3pfi_A		338	Holliday junction ATP-dependent DNA helicase RUVB;	91.31
3pxg_A		468	Negative regulator of genetic competence CLPC/MEC;	91.2
3eie_A		322	Vacuolar protein sorting-associated protein 4; AAA	91.19
1qvr_A		854	CLPB protein; coiled coil, AAA ATPase, chaperone;	91.13
1xwi_A		322	SKD1 protein; VPS4B, AAA ATPase, protein transport	91.05
3uk6_A		368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	90.82
3pxi_A		758	Negative regulator of genetic competence CLPC/MEC;	90.68
1ixz_A		254	ATP-dependent metalloprotease FTSH; AAA domain fol	90.65
2dhr_A		499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	90.44
2ce7_A		476	Cell division protein FTSH; metalloprotease; HET:	90.32
4b4t_I		437	26S protease regulatory subunit 4 homolog; hydrola	90.29
4gkw_A		167	Spindle assembly abnormal protein 6; double helix,	90.23
2qp9_X		355	Vacuolar protein sorting-associated protein 4; ATP	90.12
3n70_A		145	Transport activator; sigma-54, ntpase, PSI, MCSG,	90.11
4fcw_A		311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	90.02
3u61_B		324	DNA polymerase accessory protein 44; AAA+, ATP hyd	89.89
3u1c_A		101	Tropomyosin alpha-1 chain; anti-parallel coiled co	89.87
1iy2_A		278	ATP-dependent metalloprotease FTSH; AAA domain fol	89.85
3ec2_A		180	DNA replication protein DNAC; helicase loader, rep	89.81
3pvs_A		447	Replication-associated recombination protein A; ma	89.37
2efr_A		155	General control protein GCN4 and tropomyosin 1 Al;	88.9
1njg_A		250	DNA polymerase III subunit gamma; rossman-like fol	88.84
1sxj_B		323	Activator 1 37 kDa subunit; clamp loader, processi	88.71
3cf0_A		301	Transitional endoplasmic reticulum ATPase; AAA, P9	88.61
4b4t_M		434	26S protease regulatory subunit 6A; hydrolase, AAA	88.55
4b4t_H		467	26S protease regulatory subunit 7 homolog; hydrola	88.4
2chq_A		319	Replication factor C small subunit; DNA-binding pr	88.33
1hqc_A		324	RUVB; extended AAA-ATPase domain, complex with nuc	88.32
1fnn_A		389	CDC6P, cell division control protein 6; ORC1, AAA	88.24
4b4t_K		428	26S protease regulatory subunit 6B homolog; hydrol	88.0
1iqp_A		327	RFCS; clamp loader, extended AAA-ATPase domain, co	87.99
1sxj_A		516	Activator 1 95 kDa subunit; clamp loader, processi	87.79
4b4t_L		437	26S protease subunit RPT4; hydrolase, AAA-atpases,	87.63
2c9o_A		456	RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-	87.49
1ic2_A		81	Tropomyosin alpha chain, skeletal muscle; alpha-he	87.32
3u59_A		101	Tropomyosin beta chain; muscle contraction, actin,	87.01
1um8_A		376	ATP-dependent CLP protease ATP-binding subunit CL;	86.89
1l8q_A		324	Chromosomal replication initiator protein DNAA; AA	86.86
2qby_A		386	CDC6 homolog 1, cell division control protein 6 ho	86.83
4b4t_J		405	26S protease regulatory subunit 8 homolog; hydrola	86.66
3u1c_A		101	Tropomyosin alpha-1 chain; anti-parallel coiled co	86.52
1sxj_C		340	Activator 1 40 kDa subunit; clamp loader, processi	86.45
1c1g_A		284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	86.13
1c1g_A		284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	86.11
1ofh_A		310	ATP-dependent HSL protease ATP-binding subunit HSL	85.87
3cf2_A		806	TER ATPase, transitional endoplasmic reticulum ATP	85.67
3bas_A		89	Myosin heavy chain, striated muscle/general contro	85.52
3bos_A		242	Putative DNA replication factor; P-loop containing	85.52
2fxo_A		129	Myosin heavy chain, cardiac muscle beta isoform; c	85.36
3co5_A		143	Putative two-component system transcriptional RES	85.3
2fxo_A		129	Myosin heavy chain, cardiac muscle beta isoform; c	85.29
3hu3_A		489	Transitional endoplasmic reticulum ATPase; VCP, tr	85.29
1r6b_X		758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	84.96
2z4s_A		440	Chromosomal replication initiator protein DNAA; AA	84.91
2v4h_A		110	NF-kappa-B essential modulator; transcription, met	84.84
2bjv_A		265	PSP operon transcriptional activator; AAA, transcr	84.72
3u59_A		101	Tropomyosin beta chain; muscle contraction, actin,	84.39
2jee_A		81	YIIU; FTSZ, septum, coiled-coil, cell division, ce	84.33
2jee_A		81	YIIU; FTSZ, septum, coiled-coil, cell division, ce	84.32
3hws_A		363	ATP-dependent CLP protease ATP-binding subunit CL;	83.82
1sxj_D		353	Activator 1 41 kDa subunit; clamp loader, processi	83.73
3pxi_A		758	Negative regulator of genetic competence CLPC/MEC;	83.62
2zan_A		444	Vacuolar protein sorting-associating protein 4B; S	83.51
1jr3_A		373	DNA polymerase III subunit gamma; processivity, pr	83.2
3t15_A		293	Ribulose bisphosphate carboxylase/oxygenase activ	82.96
3mq7_A		121	Bone marrow stromal antigen 2; HIV, antiviral prot	82.43
1a5t_A		334	Delta prime, HOLB; zinc finger, DNA replication; 2	82.08
3vaa_A		199	Shikimate kinase, SK; structural genomics, center	81.39
3hnw_A		138	Uncharacterized protein; coiled-coil, structural g	81.03
3hnw_A		138	Uncharacterized protein; coiled-coil, structural g	80.77

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*	Back alignment and structure

Probab=100.00  E-value=8.4e-228  Score=2382.87  Aligned_cols=1229  Identities=22%  Similarity=0.381  Sum_probs=963.3

Q ss_pred             CCCccccCCHHHHHHHHHHHHHHHhccCCCCCcceeehHHHHHHHHHHHHHhcCCCCceEEEecCCchhhhHHHHHHHhc
Q psy4724          20 PLVYDEIDNLDLLTEKINQYIVDYNTQNSNKPIDIVTFLYIIQHISRLCRILQQPKGHAMLITIGGSGAAEVTKLATFMN   99 (1650)
Q Consensus        20 ~~~Y~~~~~~~~l~~~l~~~l~~yN~~~~~~~m~lVlF~~ai~Hv~rI~Ril~~p~G~alLvGvgGSGrqSLtrLAafi~   99 (1650)
                      ++.|+++ +.+.|+++++++|++||+.  ..+||||||+|||+|||||+|||+||||||||||||||||||||||||||+
T Consensus      1594 ~~~Y~~v-~~~~l~~~l~~~L~~yn~~--~~~m~LVlF~daleHv~RI~RIL~qp~GhaLLVGvgGSGkqSLtrLAa~i~ 1670 (3245)
T 3vkg_A         1594 TKDYQPV-NRSDLREYVKARLKVFYEE--ELDVPLVLFNEVLDHILRIDRVFRQPQGHALLIGVSGGGKSVLSRFVAWMN 1670 (3245)
T ss_dssp             C----CC-CHHHHHHHHHHHHHTTC--------CCCCCHHHHHHHHHHHHHHTSTTCCEEEEESTTSSHHHHHHHHHHHT
T ss_pred             cccCccC-CHHHHHHHHHHHHHHHHhc--ccCceEEeHHHHHHHHHHHHHHHccCCCCeEEecCCCCcHHHHHHHHHHHh
Confidence            4579999 7899999999999999973  567999999999999999999999999999999999999999999999999


Q ss_pred             CCceEEEEEcccCCcchhHHHHHHHHHHhccCCCCCEEEEEecCCcCchhhHHHHHHHHhhhhhccccccccccCCCCCc
Q psy4724         100 EYVLFEIEILKTYGLTDWRDDLCRLMKKSGGKDAKPMTFLFSDTQIQNEVFVEHINMLLNTARKRYNMDLTKSYGVCPSM  179 (1650)
Q Consensus       100 ~~~~fqIeitk~Yg~~~f~eDLk~l~~~~g~~~~k~~vFl~tD~qI~~E~fLedIN~lL~tge~~~~~~vp~l~~~v~~l  179 (1650)
                      ||++|||+++|+||.++|+||||++|++|| ++|+++||||+|+||++|+|||||||||||||      |||||+.    
T Consensus      1671 ~~~vfqi~i~k~Y~~~~f~eDLk~l~~~aG-~~~~~~vFL~tD~qi~~e~FLE~IN~lL~sGE------VP~LF~~---- 1739 (3245)
T 3vkg_A         1671 GLSIYTIKVNNNYKSSDFDDDLRMLLKRAG-CKEEKICFIFDESNVLESSFLERMNTLLAGGE------VPGLFEG---- 1739 (3245)
T ss_dssp             TCEEECCC----CCHHHHHHHHHHHHHHHH-TSCCCEEEEEEGGGCSSTHHHHHHHHHHHHSC------CTTSSCT----
T ss_pred             CCeeEEEeeeCCCCHHHHHHHHHHHHHHHh-cCCCCEEEEEeccccccHHHHHHHHHHhccCC------ccccCCH----
Confidence            999999999999999999999999999999 89999999999999999999999999999999      9999999    


Q ss_pred             cchhhhhhhhcCcchHHhhhchhHHHHHHHHHHHhhhhccCCCCccchhHhHHHHHHHHHHHHhcCCccchhhHHHhhHH
Q psy4724         180 SIVHHLEDLNASPLVYDEIDNLDLLTEKINQYIVDYNTQNSNKPIDIVTFLYIIQHISRLCRILQQPKGHAMLITIGTYR  259 (1650)
Q Consensus       180 ~~~~~Le~~~~~~~v~~E~~~~~~l~e~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~f  259 (1650)
                                      ||.   +.+.+.++..+     ...|...+  +..                       ++|.||
T Consensus      1740 ----------------dE~---~~i~~~~r~~a-----~~~g~~~d--t~~-----------------------~l~~~F 1770 (3245)
T 3vkg_A         1740 ----------------EEF---TALMHACKETA-----QRNGLILD--SEE-----------------------ELYKYF 1770 (3245)
T ss_dssp             ----------------TTH---HHHHHHHHHHH-----HHTTCCCC--CHH-----------------------HHHHHH
T ss_pred             ----------------HHH---HHHHHHHHHHH-----HhcCCCCC--CHH-----------------------HHHHHH
Confidence                            999   88899998887     44443221  333                       799999


Q ss_pred             HHHHhhhccchhhhcccchhhh---hhcccccccccceeEeeeccccCCCchhHHHHHHHHHHHHHhhcCCCCcHHHHHH
Q psy4724         260 VERKIALGRVHIIRTEKEIDDA---RMMYIPVSKHSSVLFFCCAELSNIDPMYQYSLNWFINLYVQSIEGSEKTDQLDKR  336 (1650)
Q Consensus       260 ~~~~~~l~~lhivlt~s~I~~~---R~~y~PvA~r~S~Ly~~~~~Ls~id~mYqfSl~~F~~lf~~~l~~s~~~~~l~~R  336 (1650)
                      ++||+  .|||+|+||+|+|++   |++.||      +|++||+            ||||.     .    ||.++|.+ 
T Consensus      1771 i~rvr--~NLHvVL~mSPvg~~fR~R~r~fP------aLvncct------------IDWf~-----~----Wp~eAL~~- 1820 (3245)
T 3vkg_A         1771 TSQVR--RNLHVVFTMNPASPDFHNRSATSP------ALFNRCV------------LDWFG-----E----WSPEALFQ- 1820 (3245)
T ss_dssp             HHHHT--TTCCEEEEECTTSTTTTC----CT------HHHHHSE------------EEEEE-----S----CCHHHHHH-
T ss_pred             HHHHH--HcCEEEEEECCCCHHHHHHHHHCh------HHhhCce------------eeecC-----C----CCHHHHHH-
Confidence            99999  999999999999998   889999      9999999            99996     3    99999988 


Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhhhhH----HHHHHhhhchhhhhHhhHHHHhhhcchhhhhhchhhhHHHHHHHHHhhhh
Q psy4724         337 LKILMNHFTYSIYKNICRSLFEDHKL----VFSFVLCTGQGEIAKSYIDEGLKKGLWIVLQNCHVAKSWMKELERICAEV  412 (1650)
Q Consensus       337 l~~l~~~lt~~vy~~v~r~Lfe~~kl----lfs~lL~~~~~~~a~~~i~~~~~~~~w~~l~~~~~~~~~~~~l~~~~~~~  412 (1650)
                         |+.++...+-       +.....    .+.. .+...... .-......+..+   +..|.   .+|.++.      
T Consensus      1821 ---Va~~fl~~~~-------l~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~---~~~~~---~iH~sv~------ 1876 (3245)
T 3vkg_A         1821 ---VGSEFTRNLD-------LENPQYIAPPVFIQ-EAEIMGNN-LMAIPPSHRDAV---VSSLV---YIHQTIG------ 1876 (3245)
T ss_dssp             ---HHHHHTTTSC-------CCCTTCCCCHHHHH-HHHC-----CCCSSCCHHHHH---HHHHH---HHHHHHH------
T ss_pred             ---HHHHHHhhcc-------cccccccccccccc-hhcccccc-ccccchhHHHHH---HHHHH---HHHHHHH------
Confidence               8877733211       000000    0000 00000000 000000011111   23333   5566665      


Q ss_pred             cCCCCchHHHHHHhccCCCCCCCchhhccchhhhccCchhhHHHHhhhhcCCCCCCccccccccchhHHHHHHHHHhhHH
Q psy4724         413 IVPANTHQEFRLWLTSYPSTTFPVSVLENGIKMIIEPPKGIKNNLLRSYTNDPINSDDFYNDSKNVAAWHKLLFSLCLFH  492 (1650)
Q Consensus       413 ~~~~~~~~~f~~~l~~~~~~~~p~~~le~~lk~l~e~~~~~k~~ll~~~~~d~~~~~~~~~~~~~~~~f~kLL~~l~~~~  492 (1650)
                          ..+.+|...+.|++| +||.+|+++     +   ..|+ .++..++                             .
T Consensus      1877 ----~~s~~~~~~~~R~~y-vTP~syLel-----i---~~y~-~ll~~K~-----------------------------~ 1913 (3245)
T 3vkg_A         1877 ----EANIRLLKRQGRQNY-VTPRHYLDF-----I---NQVV-LLINEKR-----------------------------D 1913 (3245)
T ss_dssp             ----HHHHHHHHSSSCCCC-CCHHHHHHH-----H---HHHH-HHHHHHH-----------------------------H
T ss_pred             ----HHHHHHHHHhCCccc-CCHHHHHHH-----H---HHHH-HHHHHHH-----------------------------H
Confidence                345567777888999 999999998     5   6666 5555443                             2


Q ss_pred             HHHHHHHHhCCCCCCCCcccccchhHHHHHHHHHHHhccCCCChhhhhhhhhhHHHhhhhccCCccccccccchHHHHHH
Q psy4724         493 AVVQERKQYGPLGWNIPYEFNLSDLNISMKQLQMFLNDYTTIPFDALIYLTVDYKYTSQMRQKNPFTLTISRTTQIIEDF  572 (1650)
Q Consensus       493 ~~~~~r~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~ip~~~l~~l~~~l~~~~~~~~~~~~~~~i~~g~~~~e~l  572 (1650)
                      ++...+.         ++..|++++.++..+|+.|+.++.        .+.|.++.+.+                +++++
T Consensus      1914 el~~~~~---------rl~~GL~KL~et~~~V~~l~~~L~--------~~~~~L~~k~~----------------ea~~~ 1960 (3245)
T 3vkg_A         1914 QLEEEQL---------HLNIGLKKLRDTEAQVKDLQVSLA--------QKNRELDVKNE----------------QANQK 1960 (3245)
T ss_dssp             HHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHH----------------HHHHH
T ss_pred             HHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHH----------------HHHHH
Confidence            3444444         677899999999999999998876        77888777765                55555


Q ss_pred             HHHHHhcceehhccchhhHHHHHHHHHHHHHhcCCCCcchHHHhhhhcCCCCCcccccccchhhhhhcCCcccccccccc
Q psy4724         573 MLCIKKGLWIVLQNCHVAKSWMKELERICAEVIVPANTHQEFRLWLTSYPSTTFPVSVLENGIKMIIEPPKGIKNNLFRS  652 (1650)
Q Consensus       573 ~~~i~~g~wvllqn~~la~~~~~e~e~~l~~~~~p~~~~a~~~Lw~t~~~~~~~pi~~l~~~vk~v~E~~~glk~~l~~~  652 (1650)
                      ++.+....-.+.+..    ....+.++.+.+..                                               
T Consensus      1961 l~~i~~~~~~ae~~k----~~v~~~~~~~~~~~----------------------------------------------- 1989 (3245)
T 3vkg_A         1961 LKQMVQDQQAAEIKQ----KDARELQVQLDVRN----------------------------------------------- 1989 (3245)
T ss_dssp             HHHHHHHHHHHHHHH----HHHHHHHHHHHHHH-----------------------------------------------
T ss_pred             HHHHHHHHHHHHHHH----HHHHHHHHHHHHHH-----------------------------------------------
Confidence            555443221111000    00011111110000                                               


Q ss_pred             ccCCCCCCcchHhhhhhhhhhHHHHHHHhhhhHHHHHHHhhCCCCCCCCccCCcccHHHHHHHHHhhhcCCCCCchhhHh
Q psy4724         653 YTNDPINSDDFYNDSKNVAAWHKLLFSLCLFHAVVQERKQYGPLGWNIPYEFNLSDLNISMKQLQMFLNDYTTIPFDALI  732 (1650)
Q Consensus       653 ~~~~~~~~~~~w~~~k~~l~~~~~l~~L~~fHavv~ER~kf~~lG~ni~y~Fn~sDl~~~~~~l~~~l~~~~~~p~~~l~  732 (1650)
                                                      +.+.+|+.          +        +-..    +            
T Consensus      1990 --------------------------------~ei~~~k~----------~--------~e~d----L------------ 2003 (3245)
T 3vkg_A         1990 --------------------------------KEIAVQKV----------K--------AYAD----L------------ 2003 (3245)
T ss_dssp             --------------------------------HHHHHHHH----------H--------HHHC----C------------
T ss_pred             --------------------------------HHHHHHHH----------H--------HHHH----H------------
Confidence                                            00000000          0        0000    0            


Q ss_pred             HhhcCccchhhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4724         733 YLTASIPFQVLAMEVYDRVIKIVGPKKAKLAEAEADYAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIE  812 (1650)
Q Consensus       733 ~~~~s~a~Wv~A~~~Y~~v~~~v~P~~~~l~~~e~~l~~~~~~L~~~~~~l~~~~~~l~~l~~~~~~~~~e~~~l~~~~~  812 (1650)
                       ..+..|                +|||+++++|++++++++++|++++++|++++++|++|+++|+++++|+++|+.+++
T Consensus      2004 -~~A~Pa----------------~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~ 2066 (3245)
T 3vkg_A         2004 -EKAEPT----------------GPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESS 2066 (3245)
T ss_dssp             ------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -hhcCCC----------------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             000011                999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhchhhccHHHHHHHHHHHHhhchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhhhcCCCCCCC
Q psy4724         813 LCKQKLERAEKLIGGLGGEKTRWSEASANLSKALVNCIGDILICAGIITYLGAFTVDFRNDLIEQWKSLSSQEQMPFTLS  892 (1650)
Q Consensus       813 ~~~~rl~ra~~Li~~L~~E~~rW~~~~~~~~~~~~~l~Gd~ll~aa~i~Y~G~f~~~~R~~l~~~w~~~~~~~~i~~~~~  892 (1650)
                      .|+.||+||++||+||++|+.||++++++++.+..+|+||||||||||+|+|||+.+||+.+++.|...|++.+||++++
T Consensus      2067 ~~~~kl~rA~~Li~gL~~Ek~RW~~~~~~l~~~~~~L~GD~LLaaafisY~G~f~~~~R~~l~~~W~~~l~~~~Ip~s~~ 2146 (3245)
T 3vkg_A         2067 KVKNKVDRSIALLDNLNSERGRWEQQSENFNTQMSTVVGDVVLASAFLAYIGFFDQNFRTDLMRKWMIRLDSVGIKFKSD 2146 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHHHHHTCCCCTT
T ss_pred             HHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHhccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhcCCCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccccccCCHHHHHHHHhCCCCCCchhhhhhHHhhcCCCcccccCchhHHHHHHHHhccCC-cEEEecCChhHHHHHHHH
Q psy4724         893 FSMITTLGDAVKIRSWNINGLPVDNFSIENGIILFNSNKWPLLIDPQGQANKWLKNVEKGN-LSVVKLTDATLLRTLERA  971 (1650)
Q Consensus       893 ~~~~~~l~~~~~~~~w~~~gLP~D~~s~enaii~~~~~r~PLlIDPq~qa~~wik~~~~~~-l~v~~~~~~~~~~~le~a  971 (1650)
                      |++.++|+|+.++++|+.+|||+|++|+|||||++++.||||||||||||++|||++++++ +.|++++|++|+++||+|
T Consensus      2147 ~~l~~~L~~~~~i~~W~~~GLP~D~lSiENaiiv~~~~R~PLlIDPq~Qa~~WIk~~~~~~~l~v~~~~d~~f~~~LE~a 2226 (3245)
T 3vkg_A         2147 LSVPSFLSKPEERLNWHANSLPSDELCIENAIMLKRFNRYPLVIDPSGQAMEFLMNQYADKKITKTSFLDSSFMKNLESA 2226 (3245)
T ss_dssp             CCHHHHTSCHHHHHHHHHTTCCSSHHHHHHHHHTTSCSSCEEEECTTSHHHHHHHHHTGGGCCCCCCC-----HHHHHHH
T ss_pred             CCHHHHcCCHHHHHHHHhCCCCCCchhhhHHHHHhcCCCceEEEChHHHHHHHHHHHhccCCceEeecCchhHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999865 999999999999999999


Q ss_pred             HHcCCeEEEecccccccccchHHHhHHHHhhcCeEEEEecCeeeeecCCeeEEEEeCCCCCCCCcccccceEEEEeeeCh
Q psy4724         972 IRTGTAVLLENIQETIDSSLEPVLLKSYYKIQNQLIMTLNNKEIEYNIKFRLYITTRLKNPHYIPEILTKITLINFMITP 1051 (1650)
Q Consensus       972 i~~G~~vlie~v~e~~dp~l~p~L~~~~~~~~~~~~i~ig~~~i~~~~~FrL~l~Tk~~np~~~pe~~~~~tvinf~vt~ 1051 (1650)
                      |++|+||||||| |++||+|+|||.|+++++||+.+|++||++|||||+||||||||++||||+||++++||+||||||+
T Consensus      2227 i~fG~pvLienv-E~lDP~L~pvL~k~~~k~gg~~~I~lGdk~idy~~~FrlyltTkl~np~y~Pev~~kvtlINFtvT~ 2305 (3245)
T 3vkg_A         2227 LRFGCPLLVQDV-ENIDPVLNPVLNKEIRKKGGRILIRLGDQDVDFSPSFMIFLFTRDPTAHFTPDLCSRVTFVNFTVTP 2305 (3245)
T ss_dssp             HHHTCCEECCCC-C----------------------------------CCCEEEEECCTTCCCCHHHHHTSEEEECCCCH
T ss_pred             HHcCCeEEEccc-cccchhHHHHHHHHHHhcCceEEEEECCeeEecCCCceEEEEecCCCCCCCHHHHhheEEEEEEecH
Confidence            999999999999 9999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhHHHHHHHHHHHH
Q psy4724        1052 QGLQNQLLGIVVAKEKPDLETKKNELIIESANNKKILKETEDKILEVLSSSQGNILEDESAVQILTSSKVLSAEITAKQE 1131 (1650)
Q Consensus      1052 ~gLe~qlL~~vv~~e~peLe~~~~~l~~~~~~~k~~L~~lEd~lL~~L~~s~g~iLdd~~li~~L~~sK~~~~~i~~~l~ 1131 (1650)
                      +|||+|||+.||++|+||||++|++|+++.+++|++|++|||+||+.|++|+||||||++||++|+++|.+|.+|+++++
T Consensus      2306 ~GLedQLL~~vv~~ErPeLE~~r~~Li~~~~~~k~~L~~LEd~lL~~Ls~s~GniLdd~~LI~~L~~sK~~s~eI~~kl~ 2385 (3245)
T 3vkg_A         2306 SSLQSQCLHEALKTERPDTHKKRSDLLKIQGEFQVKLRILEKSLLNALSQASGNILDDDSVISTLETLKKETTEIALKVE 2385 (3245)
T ss_dssp             HHHHHHHHHHHHHHHCHHHHHHHHHHHHTTHHHHHHHHTTTHHHHHHHHTTSSCGGGCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhcCCcccccCHHHHHHHHHHhhhcccCc---ccHHHHHHHHHHHHHH
Q psy4724        1132 ISSRTEKEIDDARMMYIPVSKHSSVLFFCCAELSNIDPMYQYSLNWFINLYVQSIEGSEKT---DQLDKRLKILMNHFTY 1208 (1650)
Q Consensus      1132 ~~~~~~~~i~~~r~~y~pvA~~~s~lyf~l~~L~~i~~mYq~Sl~~f~~lf~~~i~~~~~~---~~~~~r~~~l~~~~t~ 1208 (1650)
                      ++++|+++|+++|+.|||||.|||+|||++++|+.|| ||||||.||+++|..+|.+++++   +++++|+.+|++++|+
T Consensus      2386 ~a~~te~~I~~~R~~YrpvA~r~s~LyF~i~dL~~i~-mYQfSL~~F~~lF~~si~~s~~~~~~~~~~~Rl~~l~~~lt~ 2464 (3245)
T 3vkg_A         2386 ETETVMQEISEVSALYNPMALSCSRVYFAMEELSQFH-LYQFSLRAFLDIFYNLLNNNPNLVDKKDPNERLVYLSKDIFS 2464 (3245)
T ss_dssp             HHHHHHHHHHHHHHHSHHHHHHHHHHHHHHTGGGGST-TCCCCHHHHHHHHHHHHSSCGGGSSCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCC-eeeCCHHHHHHHHHHHHHhCccccccccHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999 99999999999999999998776   7899999999999999


Q ss_pred             HHHHHHhhhccccCcchHHHHHH-HHHhhcCCCCCHHHHHHHhhcCccCCCCCC--CCCCCCCCHHhHHHHHHhc-CCCC
Q psy4724        1209 SIYKNICRSLFEDHKLVFSFVLC-TGIQRSNETLDETLFKYFLTGSIDLTMDSP--NPSPSWLSNKTWTDIIQIS-KLPQ 1284 (1650)
Q Consensus      1209 ~~y~~v~r~Lfe~~kllf~~~l~-~~i~~~~~~~~~~e~~~~l~g~~~~~~~~~--~~~~~wl~~~~w~~i~~L~-~~~~ 1284 (1650)
                      .+|.|||||||++|||+|+|+|| ++|+...|.++++||+|||+|+.......+  +|.++||++..|.+|+.|+ .+|.
T Consensus      2465 ~vy~~v~RgLFekdKLlFs~~l~~~~i~~~~~~i~~~E~~flL~g~~~~~~~~~~~~~~~~wl~~~~w~~i~~L~~~l~~ 2544 (3245)
T 3vkg_A         2465 MTFNRVTRTLLNDDKLTFALQLTIISVKGTSNEIEESEWDFLLKGGDNLTSIKETIPQLDSLLSTTQQKWLICLRQQVPS 2544 (3245)
T ss_dssp             HHHHHHTTTSCGGGTTHHHHHHHHHHTTTSTTCCCHHHHHHHHHTTTTGGGCCCCCGGGTTTCCHHHHHHHHHHHHHCGG
T ss_pred             HHHHHHHHHhhhhhHHHHHHHHHHHHHHhccCCCCHHHHHHHhcCCccccccccccCCccccCCHHHHHHHHHHHhhChh
Confidence            99999999999999999999999 588888999999999999999876654332  5668899999999999998 8999


Q ss_pred             ccchHHHHhhChhhhHhhhcCCCCccccCC--Cccc-----------cchhHHHHHHHhhcCCchHHHHHHHHHhhcCCC
Q psy4724        1285 LGDLKASVKTKNSEWKSYYDSKTPEKERVS--YVQD-----------KSDICVLNILKIIRPDKVIQGIQIYVSKNLGEQ 1351 (1650)
Q Consensus      1285 f~~l~~~~~~~~~~W~~~~~~~~p~~~~~p--~~~~-----------l~~fq~lll~r~lrpdr~~~~~~~fi~~~lG~~ 1351 (1650)
                      |++|.+++..+.+.|++||+++.||...+|  |...           +++||||||+||+||||++.|+++||.+.||.+
T Consensus      2545 F~~l~~~~~~~~~~W~~~~~s~~pe~~~pp~~w~~~~~~~~~~~~~~l~~fqkLlllr~lRpDr~~~a~~~fV~~~lG~~ 2624 (3245)
T 3vkg_A         2545 FSKLVDHIQQNSSDWKQFFGKDQVGEPIIPESWIVAQAQLSNQQSTIVSNFRKILLMKAFHSDRVLQYSHSFVCSVFGED 2624 (3245)
T ss_dssp             GTTHHHHHHHTHHHHHHHTCSSCSSCCCCCTTHHHHHHHHSSCCCHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHSCTT
T ss_pred             hhhHHHHHHhCHHHHHHHhcccCcccccCccccccccccccccccchhhHHHHHHHHHHhCccHHHHHHHHHHHHHcCCc
Confidence            999999999999999999999999986555  6433           789999999999999999999999999999999


Q ss_pred             cccCcccChhhhhh-cCCCCcceEEEcCCCcChHHHHHHHHHhcccCCCeeeccCcch----------------------
Q psy4724        1352 YIVSPPFSLKQSYD-DSNCCTPLIFILSAGSDPMDLLLKFNSDMNAAKPLTVSLGQGI---------------------- 1408 (1650)
Q Consensus      1352 ~~~~~~~~l~~~~~-~s~~~~P~ifils~g~DP~~~l~~~a~~~~~~~~~~islGqgq---------------------- 1408 (1650)
                      |++||++||+.+|+ ||+|+||+|||||||+||+..|.+||++++. ++++|||||||                      
T Consensus      2625 fv~~~~~dl~~~~~~es~~~tPlifilSpG~DP~~~l~~lA~~~~~-~~~~iSLGqgQg~~~A~~~i~~a~~~G~WV~Lq 2703 (3245)
T 3vkg_A         2625 FLNTQELDMANIVEKEVKSSSPLLLCSVPGYDASSKVDDLALQLHK-QYKSFAIGSPEGFELAEKSIYAAAKSGTWVLLK 2703 (3245)
T ss_dssp             TTCC--CCHHHHHHHSSCTTSCEECEECTTCCCHHHHHHHHHHHTC-CCCCCBTTSHHHHHHHHHHHHHHHHHTCEEECB
T ss_pred             cCCCCCCCHHHHHhccCCCCccEEEEeCCCCChHHHHHHHHHHhCC-CcEEEECCCCccHHHHHHHHHHHHHcCCEEEEe
Confidence            99999999999999 9999999999999999999999999999864 79999999997                      


Q ss_pred             --------------------------------------------------------------------------------
Q psy4724        1409 -------------------------------------------------------------------------------- 1408 (1650)
Q Consensus      1409 -------------------------------------------------------------------------------- 1408 (1650)
                                                                                                      
T Consensus      2704 NcHL~~sWl~~LEk~le~~~~h~~FRLwLTsep~~~fP~~iLq~siKit~EpP~GlkaNl~rs~~~~~~~~~~~~~~~~~ 2783 (3245)
T 3vkg_A         2704 NIHLAPQWLVQLEKKLHSLSPHPSFRLFMTSEIHPALPANLLRMSNVFSYENPPGVKANLLHTFIGIPATRMDKQPAERS 2783 (3245)
T ss_dssp             CGGGCTTTHHHHHHHHHTCCCCTTCEEECCEESCTTSCHHHHHTSEECCBCCCSSHHHHHHHHHTTSCHHHHTSSSTHHH
T ss_pred             chhhhHhHHHHHHHHHHccCCCCCeeEEEEecCCCCCCHHHHHhhhHheeCCChhHHHHHHHHHHhCCHHHhccCcHHHH
Confidence                                                                                            


Q ss_pred             --------------------------------------------------------------------------------
Q psy4724        1409 -------------------------------------------------------------------------------- 1408 (1650)
Q Consensus      1409 -------------------------------------------------------------------------------- 1408 (1650)
                                                                                                      
T Consensus      2784 ~llf~L~fFHAvvqERrkfgplGWn~~YeFn~sDl~~s~~~l~~~l~~~~~~~~n~~~~~iPw~~L~yl~gei~YGGrVt 2863 (3245)
T 3vkg_A         2784 RIYFLLAWFHAIIQERLRYIPLGWTKFFEFNDADLRGALDSIDYWVDLYSKGRSNIDPDKIPWIAVRTILGSTIYGGRID 2863 (3245)
T ss_dssp             HHHHHHHHHHHHHHHGGGGTTTSCSSCCCCCHHHHHHHHHHHHHHHHHHSTTCSCCCTTTSCHHHHHHCCCCCCCSTTCC
T ss_pred             HHHHHHHHHHHHHHHHHHhCccccCcccccchHHHHHHHHHHHHHHHHhcccccccCCCCCCHHHHHHHHhhcccCCccC
Confidence                                                                                            


Q ss_pred             --------------------------------------------HHHhhcCCCCCCCcccccccchhhhhhhhhHHHHHH
Q psy4724        1409 --------------------------------------------QSYIQSLPLNNTPEIFGLHENADLTKNFNETRLVLG 1444 (1650)
Q Consensus      1409 --------------------------------------------~~~i~~lp~~~~p~~fglh~na~i~~~~~~~~~~~~ 1444 (1650)
                                                                  .+||++||..|+|++||||+||+|++++++|+.+++
T Consensus      2864 Dd~DrrlL~t~l~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~y~~~I~~LP~~~~P~~fGLh~NA~i~~~~~~s~~l~~ 2943 (3245)
T 3vkg_A         2864 NEFDMRLLYSFLEQLFTPSAFNPDFPLVPSIGLSVPEGTTRAHFMKWIEALPEISTPIWLGLPENAESLLLSNKARKMIN 2943 (3245)
T ss_dssp             SSSHHHHHHHHHHHHSSGGGGSSSCEEEGGGTEECCCCSSHHHHHHHHTTSCSCCCGGGGTSCTTHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHcCHhhcCCcccCCCCCCCCCCCCCCHHHHHHHHHhCCCCCCccccCCChhHHHHHHHHHHHHHHH
Confidence                                                        078999999999999999999999999999999999


Q ss_pred             HHHhhccCCCCCC-------C--------CCCChhhHHHHHHHHHHhhCCCCCCHHHHhcccCCccccchhHHHHHHHHH
Q psy4724        1445 NILLCAQQGSTPG-------A--------QPGDAEAKNVRIIDELLGKFPEQFDEEAAGRKYPILYNQSMNTVLKQELIR 1509 (1650)
Q Consensus      1445 ~~~~~~~~~~~~~-------~--------~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~vl~qE~~r 1509 (1650)
                      +++.+||+.++++       +        ++.++++.|.+++++|+++||+.||..   .+++..+.+||++||.|||+|
T Consensus      2944 ~ll~lq~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~lP~~~~~~---~~~~~~~~~pl~~vl~QE~~r 3020 (3245)
T 3vkg_A         2944 DLQKMQSSEEDGEDDQVSGSSKKESSSSSSEDKGKAKLRATITEWTKLLPKPLKQL---KRTTQNIKDPLFRCFEREIST 3020 (3245)
T ss_dssp             HHHHHHHTTTC---------------CHHHHHHHHHC-------------------------------CCHHHHHHHHHH
T ss_pred             HHHHhCCcccccccccccccccccccccccCCCcHHHHHHHHHHHHHhCccccchh---hccccccCChHHHHHHHHHHH
Confidence            9999999865432       0        112456668999999999999999842   345566789999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCcccCCHhHHHHHHhHhcCCCcccchhccCCCCCCchhhHHHHHHhhcccch
Q psy4724        1510 YNRLTVIIKKSLQEVRQAVKGLIVMSKELEEINTSIMFGKIPQAWASKSYPSLKPLGSYIVDLLARREGRGE 1581 (1650)
Q Consensus      1510 ~n~ll~~i~~sL~~l~~a~~G~~~ms~~le~~~~~l~~~~vP~~W~~~~~ps~k~L~~w~~dl~~r~e~~~~ 1581 (1650)
                      ||+||..||+||.+|++||+|+++||++||++++||++|+||+.|.+.+|||.+||++|+.||+.|+++-..
T Consensus      3021 ~n~Ll~~ir~sL~~L~~aikG~i~mS~~le~l~~sl~~~~VP~~W~~~syps~k~L~~W~~dL~~R~~~l~~ 3092 (3245)
T 3vkg_A         3021 GGKLVKKITNDLANLLELISGNIKSTNYLRSLTTSISKGIVPKEWKWYSVPETISLSVWISDFSKRMQQLSE 3092 (3245)
T ss_dssp             HHHHHHHHHHHHHHHC-----------------------------CCSCCCSSCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhHHHHHHHhCCCCcCCHHHHHHHHHHHcCCCchhhhcccCCCCCCHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999877543

PyMOL of 3vkg

>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A	Back alignment and structure

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*	Back alignment and structure

>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A	Back alignment and structure

>2rr7_A Dynein heavy chain 9; microtubule-binding, stalk head, MTBD, antiparallel coil, motor protein, DSH; NMR {Chlamydomonas reinhardtii}	Back alignment and structure

>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} PDB: 3j1t_A 3j1u_A	Back alignment and structure

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*	Back alignment and structure

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20	Back alignment and structure

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}	Back alignment and structure

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}	Back alignment and structure

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}	Back alignment and structure

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}	Back alignment and structure

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*	Back alignment and structure

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20	Back alignment and structure

>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1	Back alignment and structure

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}	Back alignment and structure

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}	Back alignment and structure

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}	Back alignment and structure

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}	Back alignment and structure

>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1	Back alignment and structure

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*	Back alignment and structure

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}	Back alignment and structure

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}	Back alignment and structure

>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}	Back alignment and structure

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C	Back alignment and structure

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20	Back alignment and structure

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}	Back alignment and structure

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*	Back alignment and structure

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}	Back alignment and structure

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*	Back alignment and structure

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}	Back alignment and structure

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*	Back alignment and structure

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}	Back alignment and structure

>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}	Back alignment and structure

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*	Back alignment and structure

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}	Back alignment and structure

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*	Back alignment and structure

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*	Back alignment and structure

>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A	Back alignment and structure

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20	Back alignment and structure

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*	Back alignment and structure

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}	Back alignment and structure

>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A	Back alignment and structure

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*	Back alignment and structure

>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20	Back alignment and structure

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}	Back alignment and structure

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}	Back alignment and structure

>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}	Back alignment and structure

>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A	Back alignment and structure

>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*	Back alignment and structure

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20	Back alignment and structure

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}	Back alignment and structure

>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20	Back alignment and structure

>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20	Back alignment and structure

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}	Back alignment and structure

>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*	Back alignment and structure

>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1	Back alignment and structure

>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}	Back alignment and structure

>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20	Back alignment and structure

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*	Back alignment and structure

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}	Back alignment and structure

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}	Back alignment and structure

>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A	Back alignment and structure

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20	Back alignment and structure

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A	Back alignment and structure

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A	Back alignment and structure

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*	Back alignment and structure

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*	Back alignment and structure

>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A	Back alignment and structure

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A	Back alignment and structure

>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A	Back alignment and structure

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}	Back alignment and structure

>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A	Back alignment and structure

>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*	Back alignment and structure

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*	Back alignment and structure

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*	Back alignment and structure

>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}	Back alignment and structure

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*	Back alignment and structure

>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}	Back alignment and structure

>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}	Back alignment and structure

>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}	Back alignment and structure

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A	Back alignment and structure

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20	Back alignment and structure

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}	Back alignment and structure

>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A	Back alignment and structure

>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*	Back alignment and structure

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A	Back alignment and structure

>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A	Back alignment and structure

>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*	Back alignment and structure

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}	Back alignment and structure

>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}	Back alignment and structure

>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		1650
d1v63a_		101	a.21.1.1 (A:) Nucleolar transcription factor 1 (Up	7e-05
d1v63a_		101	a.21.1.1 (A:) Nucleolar transcription factor 1 (Up	5e-04
d1v63a_		101	a.21.1.1 (A:) Nucleolar transcription factor 1 (Up	8e-04
d1v63a_		101	a.21.1.1 (A:) Nucleolar transcription factor 1 (Up	0.001
d1zroa1		275	a.264.1.1 (A:8-282) Erythrocyte binding antigen re	2e-04
d1zroa1		275	a.264.1.1 (A:8-282) Erythrocyte binding antigen re	3e-04
d1zroa1		275	a.264.1.1 (A:8-282) Erythrocyte binding antigen re	3e-04
d1zroa1		275	a.264.1.1 (A:8-282) Erythrocyte binding antigen re	4e-04
d1zroa1		275	a.264.1.1 (A:8-282) Erythrocyte binding antigen re	7e-04
d1zroa1		275	a.264.1.1 (A:8-282) Erythrocyte binding antigen re	0.003
d1zroa1		275	a.264.1.1 (A:8-282) Erythrocyte binding antigen re	0.003
d1v64a_		108	a.21.1.1 (A:) Nucleolar transcription factor 1 (Up	4e-04
d1v64a_		108	a.21.1.1 (A:) Nucleolar transcription factor 1 (Up	4e-04
d2lefa_		86	a.21.1.1 (A:) Lymphoid enhancer-binding factor, LE	4e-04
d2lefa_		86	a.21.1.1 (A:) Lymphoid enhancer-binding factor, LE	0.002
d2lefa_		86	a.21.1.1 (A:) Lymphoid enhancer-binding factor, LE	0.002
d1zroa2		314	a.264.1.1 (A:283-596) Erythrocyte binding antigen	6e-04
d1zroa2		314	a.264.1.1 (A:283-596) Erythrocyte binding antigen	0.004
d1zroa2		314	a.264.1.1 (A:283-596) Erythrocyte binding antigen	0.004
d1zroa2		314	a.264.1.1 (A:283-596) Erythrocyte binding antigen	0.004
d1zroa2		314	a.264.1.1 (A:283-596) Erythrocyte binding antigen	0.004
d1zroa2		314	a.264.1.1 (A:283-596) Erythrocyte binding antigen	0.004
d2c6ja1		294	a.264.1.1 (A:15-308) Duffy receptor, alpha form {P	8e-04
d2c6ja1		294	a.264.1.1 (A:15-308) Duffy receptor, alpha form {P	0.001
d2c6ja1		294	a.264.1.1 (A:15-308) Duffy receptor, alpha form {P	0.002
d1vqob1		337	b.43.3.2 (B:1-337) Ribosomal protein L3 {Archaeon	0.004

>d1v63a_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId: 10090]} Length = 101	Back information, alignment and structure


class: All alpha proteins
fold: HMG-box
superfamily: HMG-box
family: HMG-box
domain: Nucleolar transcription factor 1 (Upstream binding factor 1, UBF-1)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.4 bits (97), Expect = 7e-05
 Identities = 8/47 (17%), Positives = 21/47 (44%)

Query: 1584 KKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKK 1630
             +K+  KK  ++++++ K     + K    + +   K+    K+K  
Sbjct: 51   SQKEHYKKLAEEQQRQYKVHLDLWVKSLSPQDRAAYKEYISNKRKSG 97

PyMOL of d1v63a_

>d1v63a_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId: 10090]} Length = 101	Back information, alignment and structure

>d1v63a_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId: 10090]} Length = 101	Back information, alignment and structure

>d1v63a_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId: 10090]} Length = 101	Back information, alignment and structure

>d1v64a_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId: 10090]} Length = 108	Back information, alignment and structure

>d1v64a_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId: 10090]} Length = 108	Back information, alignment and structure

>d2lefa_ a.21.1.1 (A:) Lymphoid enhancer-binding factor, LEF1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 86	Back information, alignment and structure

>d2lefa_ a.21.1.1 (A:) Lymphoid enhancer-binding factor, LEF1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 86	Back information, alignment and structure

>d2lefa_ a.21.1.1 (A:) Lymphoid enhancer-binding factor, LEF1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 86	Back information, alignment and structure

>d1vqob1 b.43.3.2 (B:1-337) Ribosomal protein L3 {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 337	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		1650
d1d2na_		246	Hexamerization domain of N-ethylmalemide-sensitive	96.52
d1ixza_		247	AAA domain of cell division protein FtsH {Thermus	95.31
d1e32a2		258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	94.62
d1jbka_		195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	93.84
d1iqpa2		231	Replication factor C {Archaeon Pyrococcus furiosus	93.41
d1in4a2		238	Holliday junction helicase RuvB {Thermotoga mariti	92.74
d1ixsb2		239	Holliday junction helicase RuvB {Thermus thermophi	92.63
d1lv7a_		256	AAA domain of cell division protein FtsH {Escheric	92.46
d1r7ra3		265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	92.32
d1r6bx2		268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	92.13
d1sxjc2		227	Replication factor C3 {Baker's yeast (Saccharomyce	91.55
d1qvra2		387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	91.07
d1sxja2		253	Replication factor C1 {Baker's yeast (Saccharomyce	90.84
d2gnoa2		198	gamma subunit of DNA polymerase III, N-domain {The	89.93
d1ofha_		309	HslU {Haemophilus influenzae [TaxId: 727]}	89.76
d2a5yb3		277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	89.11
d1um8a_		364	ClpX {Helicobacter pylori [TaxId: 210]}	88.62
d1r6bx3		315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	88.51
d1qvra3		315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	87.55
d1sxjb2		224	Replication factor C4 {Baker's yeast (Saccharomyce	87.28
d1w44a_		321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	86.26
d1fnna2		276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	84.84
d1viaa_		161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	84.45
d1gvnb_		273	Plasmid maintenance system epsilon/zeta, toxin zet	84.27
d1a5ta2		207	delta prime subunit of DNA polymerase III, N-domai	84.17
d1e6ca_		170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	83.85
d2iyva1		165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	81.94
d1njfa_		239	delta prime subunit of DNA polymerase III, N-domai	80.76

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.52  E-value=0.0017  Score=70.64  Aligned_cols=88  Identities=10%  Similarity=0.081  Sum_probs=66.7

Q ss_pred             eeehHHHHHHHHHHHHHhc--------CCCCceEEEecCCchhhhHHHHHHHhcCCceEEEEEc---ccCCcchhHHHHH
Q psy4724          54 IVTFLYIIQHISRLCRILQ--------QPKGHAMLITIGGSGAAEVTKLATFMNEYVLFEIEIL---KTYGLTDWRDDLC  122 (1650)
Q Consensus        54 lVlF~~ai~Hv~rI~Ril~--------~p~G~alLvGvgGSGrqSLtrLAafi~~~~~fqIeit---k~Yg~~~f~eDLk  122 (1650)
                      +|-+.|.++||...+.++.        .|.++.||.|+.|+||.+|+|--|.-.++.++.|..+   .+|....-...++
T Consensus        11 ~i~~~~~i~~i~~~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~g~~~~~~~~~i~   90 (246)
T d1d2na_          11 IIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAKCQAMK   90 (246)
T ss_dssp             CCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCCHHHHHHHHH
T ss_pred             CcCcCHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECcCCCCHHHHHHHHhhcccccccccccccccccccccchhhhhh
Confidence            7777888888887776543        4667899999999999999998888889999999754   2344433345687


Q ss_pred             HHHHHhccCCCCCEEEEEecC
Q psy4724         123 RLMKKSGGKDAKPMTFLFSDT  143 (1650)
Q Consensus       123 ~l~~~~g~~~~k~~vFl~tD~  143 (1650)
                      .++..|-  +..|+|++|.|-
T Consensus        91 ~if~~A~--~~~p~il~iDEi  109 (246)
T d1d2na_          91 KIFDDAY--KSQLSCVVVDDI  109 (246)
T ss_dssp             HHHHHHH--TSSEEEEEECCH
T ss_pred             hhhhhhh--hcccceeehhhh
Confidence            8888775  567888776664

PyMOL of d1d2na_

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}	Back information, alignment and structure

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}	Back information, alignment and structure

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}	Back information, alignment and structure

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}	Back information, alignment and structure

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	Back information, alignment and structure

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}	Back information, alignment and structure

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}	Back information, alignment and structure

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}	Back information, alignment and structure

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}	Back information, alignment and structure

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}	Back information, alignment and structure

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure