Psyllid ID: psy4725

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------
MSLGNTVHHLSGKILCPAIELSLTLTLLGGQSFRWKQLTSDEKKLGNRFQGVFKECVWTLWADPSYLHYQVFSQHKLNANSVETMLKEYFRLDENLPELYAEWSNRDAFFRQTCGDFVGIRMLNQDLTENIFSFLCSSNNNIARISGMIDKMCKEYGTLICTLDSDGNLVGDCEKGRSHAKSCPAVTKFFAFPSIDALARPAVEAKLRQLGFGYRAKFIQKSAEYIIQGGGESWLERLGGKSYEEAREELQRLPGIGAKVGDGVFKEHVWTLWADPSYLHYQVYSQHKLNTNSVETMLKEYFRLDENLPELYAEWSNRDAFFRQTCGDFVADCICLMSLSHLQAVPVDTHVYQIACNHYHFQKSTSKTLTPAVYNQIRAFFADKFGKYAGWAHSILFCADLKKFQAKPGEEKVGKRESGTITETPGAVIEKSGKVIEAKPKIDEDKRKSEIILQSKN
ccccccccccccEEEcccccccHHHHHHccccccEEEccccccccccEEEEEEccEEEEEEEcccEEEEEEEccccccHHHHHHHHHHHHHccccHHHHHHHHHcccHHHHHHHccccccccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccHHHHccccHHHHHHHcccccHHHHHHHHHHHHHHcccccHHHHHccccHHHHHHHHHccccccHHHHHHHHHHccccccccccccHHHHHHHHHccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccccccHHcccccccccccccHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccc
cccccHHHHHHHHccccHHHcccHHEEccccEEEEEEccccccccccEEEEEEccEEEEEEEcccEEEEEEEcccccccccHHHHHHHHccccccHHHHHHHHHHHcHHHHHHHHHccccccccccHHHHHHHHHccccccHHHHHHHHHHHHHHHccEEEEEcccccccccccccccccccccccEEEEccccHHHHHcccHHHHHHHHcccccHHHHHHHHHHHHccccHHHHHHHccccHHHHHHHHcccccccHHHHHHHHHHHccccccccccHHHHHHHHHHccccccHHHHHHHHHHHHHHHccHHHHHHHHHHHcccccHHHHHHHHHHcccccccccccHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHccccccccEEcccEEccccEEEEEEEEEEEEcccccHcccccEEEEEccc
mslgntvhhlsgkilcPAIELSLTLTLLGGQSFRWKQLTSDEKKLGNRFQGVFKECVWtlwadpsylhYQVFSQHKLNANSVETMLKEYFRLDENLPELYAewsnrdaffrqtcGDFVGIRMLNQDLTENIFSFLCSSNNNIARISGMIDKMCKEYGTLICtldsdgnlvgdcekgrshakscpavtkffafpsidalARPAVEAKLRQLGFGYRAKFIQKSAEYIIQGGGeswlerlggksYEEAREELQRlpgigakvgdgvFKEHVwtlwadpsylhyQVYSQHKLNTNSVETMLKEYFRLDENLPELYAEWSNRDAFFRQTCGDFVADCICLMSlshlqavpvdtHVYQIACNHyhfqkstsktltpAVYNQIRAFFADKFGKYAGWAHSILFCADLKkfqakpgeekvgkresgtitetpgavieksgkvieakpkidedkrKSEIILQSKN
MSLGNTVHHLSGKILCPAIELSLTLTLLGGQSFRWKQLTSDEKKLGNRFQGVFKECVWTLWADPSYLHYQVFSQHKLNANSVETMLKEYFRLDENLPELYAEWSNRDAFFRQTCGDFVGIRMLNQDLTENIFSFLCSSNNNIARISGMIDKMCKEYGTLICTLDSDGNLVGDCEKGRSHAKSCPAVTKFFAFPSIDALARPAVEAKLRQLGFGYRAKFIQKSAEYIIQGGGESWLERLGGKSYEEAREELQRLPGIGAKVGDGVFKEHVWTLWADPSYLHYQVYSQHKLNTNSVETMLKEYFRLDENLPELYAEWSNRDAFFRQTCGDFVADCICLMSLSHLQAVPVDTHVYQIACNHYHFQKSTSKTLTPAVYNQIRAFFADKFGKYAGWAHSILFCADLKKFQAKpgeekvgkresgtitetpgavieksgkvieakpkidedkrkseiilqskn
MSLGNTVHHLSGKILCPAIElsltltllggqsFRWKQLTSDEKKLGNRFQGVFKECVWTLWADPSYLHYQVFSQHKLNANSVETMLKEYFRLDENLPELYAEWSNRDAFFRQTCGDFVGIRMLNQDLTENIFSFLCSSNNNIARISGMIDKMCKEYGTLICTLDSDGNLVGDCEKGRSHAKSCPAVTKFFAFPSIDALARPAVEAKLRQLGFGYRAKFIQKSAEYIIQGGGESWLERLGGKSYEEAREELQRLPGIGAKVGDGVFKEHVWTLWADPSYLHYQVYSQHKLNTNSVETMLKEYFRLDENLPELYAEWSNRDAFFRQTCGDFVADCICLMSLSHLQAVPVDTHVYQIACNHYHFQKSTSKTLTPAVYNQIRAFFADKFGKYAGWAHSILFCADLKKFQAKPGEEKVGKRESGTITETPGAVIEKSGKVIEAKPKIDEDKRKSEIILQSKN
******VHHLSGKILCPAIELSLTLTLLGGQSFRWKQLTSDEKKLGNRFQGVFKECVWTLWADPSYLHYQVFSQHKLNANSVETMLKEYFRLDENLPELYAEWSNRDAFFRQTCGDFVGIRMLNQDLTENIFSFLCSSNNNIARISGMIDKMCKEYGTLICTLDSDGNLVGDCEKGRSHAKSCPAVTKFFAFPSIDALARPAVEAKLRQLGFGYRAKFIQKSAEYIIQGGGESWLERLGGKSYEEAREELQRLPGIGAKVGDGVFKEHVWTLWADPSYLHYQVYSQHKLNTNSVETMLKEYFRLDENLPELYAEWSNRDAFFRQTCGDFVADCICLMSLSHLQAVPVDTHVYQIACNHYHFQKSTSKTLTPAVYNQIRAFFADKFGKYAGWAHSILFCADLKKF*****************************************************
*******HHLSGKILCPAIELSLTLTLLGGQSFRWKQLTSDEKKLGNRFQGVFKECVWTLWADPSYLHYQVFSQHKLNANSVETMLKEYFRLDENLPELYAEWSNRDAFFRQTCGDFVGIRMLNQDLTENIFSFLCSSNNNIARISGMIDKMCKEYGTLICTLDSDGNLVGDCEKGRSHAKSCPAVTKFFAFPSIDALARPAVEAKLRQLGFGYRAKFIQKSAEYIIQGGGESWLERLGGKSYEEAREELQRLPGIGAKVGDGVFKEHVWTLWADPSYLHYQVYSQHKLNTNSVETMLKEYFRLDENLPELYAEWSNRDAFFRQTCGDFVADCICLMSLSHLQAVPVDTHVYQIACNHYHFQ*****TLTPAVYNQIRAFFADKFGKYAGWAHSILFC***********************************************************
********HLSGKILCPAIELSLTLTLLGGQSFRWKQLTSDEKKLGNRFQGVFKECVWTLWADPSYLHYQVFSQHKLNANSVETMLKEYFRLDENLPELYAEWSNRDAFFRQTCGDFVGIRMLNQDLTENIFSFLCSSNNNIARISGMIDKMCKEYGTLICTLDSDGNLVGDCEKGRSHAKSCPAVTKFFAFPSIDALARPAVEAKLRQLGFGYRAKFIQKSAEYIIQGGGESWLERLGGKSYEEAREELQRLPGIGAKVGDGVFKEHVWTLWADPSYLHYQVYSQHKLNTNSVETMLKEYFRLDENLPELYAEWSNRDAFFRQTCGDFVADCICLMSLSHLQAVPVDTHVYQIACNHYHFQKSTSKTLTPAVYNQIRAFFADKFGKYAGWAHSILFCADLKKFQ**************TITETPGAVIEKSGKVIEAKPKIDEDKRKSEIILQSKN
****NTVHHLSGKILCPAIELSLTLTLLGGQSFRWKQLTSDEKKLGNRFQGVFKECVWTLWADPSYLHYQVFSQHKLNANSVETMLKEYFRLDENLPELYAEWSNRDAFFRQTCGDFVGIRMLNQDLTENIFSFLCSSNNNIARISGMIDKMCKEYGTLICTLDSDGNLVG************PAVTKFFAFPSIDALARPAVEAKLRQLGFGYRAKFIQKSAEYIIQGGGESWLERLGGKSYEEAREELQRLPGIGAKVGDGVFKEHVWTLWADPSYLHYQVYSQHKLNTNSVETMLKEYFRLDENLPELYAEWSNRDAFFRQTCGDFVADCICLMSLSHLQAVPVDTHVYQIACNHYHFQKSTSKTLTPAVYNQIRAFFADKFGKYAGWAHSILFCADLKKFQAKPGEEKVGKRESGTITETPGAVIEKSGKVIEAKPKID***RKS**IL****
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MSLGNTVHHLSGKILCPAIELSLTLTLLGGQSFRWKQLTSDEKKLGNRFQGVFKECVWTLWADPSYLHYQVFSQHKLNANSVETMLKEYFRLDENLPELYAEWSNRDAFFRQTCGDFVGIRMLNQDLTENIFSFLCSSNNNIARISGMIDKMCKEYGTLICTLDSDGNLVGDCEKGRSHAKSCPAVTKFFAFPSIDALARPAVEAKLRQLGFGYRAKFIQKSAEYIIQGGGESWLERLGGKSYEEAREELQRLPGIGAKVGDGVFKEHVWTLWADPSYLHYQVYSQHKLNTNSVETMLKEYFRLDENLPELYAEWSNRDAFFRQTCGDFVADCICLMSLSHLQAVPVDTHVYQIACNHYHFQKSTSKTLTPAVYNQIRAFFADKFGKYAGWAHSILFCADLKKFQAKPGEEKVGKRESGTITETPGAVIEKSGKVIEAKPKIDEDKRKSEIILQSKN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query457 2.2.26 [Sep-21-2011]
O15527345 N-glycosylase/DNA lyase O no N/A 0.614 0.814 0.352 7e-46
O08760345 N-glycosylase/DNA lyase O yes N/A 0.614 0.814 0.352 1e-45
O70249345 N-glycosylase/DNA lyase O yes N/A 0.614 0.814 0.355 8e-45
Q9V3I8343 N-glycosylase/DNA lyase O yes N/A 0.606 0.807 0.331 2e-34
P53397376 N-glycosylase/DNA lyase O yes N/A 0.726 0.882 0.272 5e-29
Q9FNY7365 N-glycosylase/DNA lyase O yes N/A 0.466 0.583 0.327 1e-23
O27397312 Probable N-glycosylase/DN yes N/A 0.288 0.423 0.262 0.0007
>sp|O15527|OGG1_HUMAN N-glycosylase/DNA lyase OS=Homo sapiens GN=OGG1 PE=1 SV=2 Back     alignment and function desciption
 Score =  185 bits (469), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 116/329 (35%), Positives = 165/329 (50%), Gaps = 48/329 (14%)

Query: 10  LSGKILCPAIELSLTLTLLGGQSFRWKQLTSDEKKLGNRFQGVFKECVWTLWADPSYLHY 69
           L   I CP  EL L L L  GQSFRW++ +         + GV  + VWTL      LH 
Sbjct: 22  LWASIPCPRSELRLDLVLPSGQSFRWREQSPAH------WSGVLADQVWTLTQTEEQLHC 75

Query: 70  QVFSQHKLNANSVET----MLKEYFRLDENLPELYAEWSNRDAFFRQTCGDFVGIRMLNQ 125
            V+   K  A+         +++YF+LD  L +LY  W + D+ F++    F G+R+L Q
Sbjct: 76  TVYRGDKSQASRPTPDELEAVRKYFQLDVTLAQLYHHWGSVDSHFQEVAQKFQGVRLLRQ 135

Query: 126 DLTENIFSFLCSSNNNIARISGMIDKMCKEYGTLICTLDSDGNLVGDCEKGRSHAKSCPA 185
           D  E +FSF+CSSNNNIARI+GM++++C+ +G  +  LD                     
Sbjct: 136 DPIECLFSFICSSNNNIARITGMVERLCQAFGPRLIQLDD-------------------- 175

Query: 186 VTKFFAFPSIDALARPAVEAKLRQLGFGYRAKFIQKSAEYII-QGGGESWLERLGGKSYE 244
              +  FPS+ ALA P VEA LR+LG GYRA+++  SA  I+ + GG +WL++L   SYE
Sbjct: 176 -VTYHGFPSLQALAGPEVEAHLRKLGLGYRARYVSASARAILEEQGGLAWLQQLRESSYE 234

Query: 245 EAREELQRLPGIGAKVGDGV------------FKEHVWTLWADPSYLHYQVYSQHKLNTN 292
           EA + L  LPG+G KV D +               H+W + A   Y  +   SQ K  + 
Sbjct: 235 EAHKALCILPGVGTKVADCICLMALDKPQAVPVDVHMWHI-AQRDYSWHPTTSQAKGPSP 293

Query: 293 SVETMLKEYFRLDENLPELYAEWSNRDAF 321
                L  +FR   +L   YA W+    F
Sbjct: 294 QTNKELGNFFR---SLWGPYAGWAQAVLF 319
DNA repair enzyme that incises DNA at 8-oxoG residues. Excises 7,8-dihydro-8-oxoguanine and 2,6-diamino-4-hydroxy-5-N-methylformamidopyrimidine (FAPY) from damaged DNA. Has a beta-lyase activity that nicks DNA 3' to the lesion.
Homo sapiens (taxid: 9606)
EC: 4EC: .EC: 2EC: .EC: 9EC: 9EC: .EC: 1EC: 8
>sp|O08760|OGG1_MOUSE N-glycosylase/DNA lyase OS=Mus musculus GN=Ogg1 PE=2 SV=2 Back     alignment and function description
>sp|O70249|OGG1_RAT N-glycosylase/DNA lyase OS=Rattus norvegicus GN=Ogg1 PE=2 SV=1 Back     alignment and function description
>sp|Q9V3I8|OGG1_DROME N-glycosylase/DNA lyase OS=Drosophila melanogaster GN=Ogg1 PE=2 SV=2 Back     alignment and function description
>sp|P53397|OGG1_YEAST N-glycosylase/DNA lyase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=OGG1 PE=1 SV=1 Back     alignment and function description
>sp|Q9FNY7|OGG1_ARATH N-glycosylase/DNA lyase OGG1 OS=Arabidopsis thaliana GN=OGG1 PE=1 SV=1 Back     alignment and function description
>sp|O27397|OGG1_METTH Probable N-glycosylase/DNA lyase OS=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) GN=MTH_1342 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query457
407929465416 hypothetical protein MPH_00361 [Macropho 0.768 0.843 0.342 2e-52
302414572412 N-glycosylase/DNA lyase [Verticillium al 0.754 0.837 0.329 2e-52
320031289403 DNA N-glycosylase [Coccidioides posadasi 0.691 0.784 0.35 4e-51
119189251403 hypothetical protein CIMG_04673 [Coccidi 0.689 0.781 0.349 7e-51
67541024414 hypothetical protein AN6682.2 [Aspergill 0.770 0.850 0.341 1e-50
346979375414 N-glycosylase/DNA lyase [Verticillium da 0.759 0.838 0.330 2e-50
303323231403 HhH-GPD family base excision DNA repair 0.691 0.784 0.35 2e-50
380096158457 unnamed protein product [Sordaria macros 0.737 0.737 0.339 2e-50
451849635407 hypothetical protein COCSADRAFT_37822 [C 0.698 0.783 0.338 2e-50
242803785410 DNA N-glycosylase, putative [Talaromyces 0.678 0.756 0.334 2e-50
>gi|407929465|gb|EKG22294.1| hypothetical protein MPH_00361 [Macrophomina phaseolina MS6] Back     alignment and taxonomy information
 Score =  213 bits (542), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 155/453 (34%), Positives = 208/453 (45%), Gaps = 102/453 (22%)

Query: 20  ELSLTLTLLGGQSFRWKQLTSDEKKLGNRFQGVFKECVWTLWADPSYLHYQVF------- 72
           EL +  TL  GQSFRW++   DE      +       + +L  DP YLHY+V        
Sbjct: 18  ELCINTTLRCGQSFRWRKSADDE------WSCALHGRILSLRQDPEYLHYRVIYPSTSRI 71

Query: 73  --------------SQHKLNANSVETMLKEYFRLDENLPELYAEWSNRDAFFRQTCGDFV 118
                         S    + ++VE +++ YF L  NL +LY +W+  DA F++    F 
Sbjct: 72  LPTPPPSTAPSTTESPAPDDDDTVE-LIEHYFNLKPNLGQLYEDWAAADANFKKKAPKFT 130

Query: 119 GIRMLNQDLTENIFSFLCSSNNNIARISGMIDKMCKEYGTLICTLDSDGNLVGDCEKGRS 178
           G+R+L QD  E +  F+CSSNNNIARIS M++K+C  YG LI  + S             
Sbjct: 131 GVRILKQDAWEALVGFICSSNNNIARISQMVEKLCINYGPLIGHVGSQA----------- 179

Query: 179 HAKSCPAVTKFFAFPSIDALARPAVEAKLRQLGFGYRAKFIQKSAEYIIQGGGESWLERL 238
                     F  FPS  AL  P VE +LRQLGFGYRAK++ ++A  +I    E WL+ L
Sbjct: 180 ----------FHDFPSASALTDPKVEQQLRQLGFGYRAKYLHQTA-VMIAEKEEGWLDSL 228

Query: 239 GGKSYEEAREELQRLPGIGAKVGDGVFKEHVWTLWADPSYLHYQVYSQHKLNTNSVETML 298
                   R     + G+ A+   G F                            VE+  
Sbjct: 229 --------RNPESPVLGVDARPA-GEF----------------------------VESGR 251

Query: 299 KEYFRLDENLPELYAEWSNRDAFFRQTCGDFVADCICLMSLSHLQAVPVDTHVYQIACNH 358
           + Y    E L  L            +  G  VADC+CLM L   +AVPVDTHV+QIA   
Sbjct: 252 EGYRSAHEQLLAL------------KGVGPKVADCVCLMGLGWGEAVPVDTHVWQIAQRD 299

Query: 359 YHFQKSTSKTLTPAVYNQIRAFFADKFGKYAGWAHSILFCADLKKFQAKPGEEKVGKRES 418
           Y F K    +LT A Y+ +   F   +GK AGWAHS+LF ADL+ F  +   +   K+E 
Sbjct: 300 YRFGKGKHSSLTKATYDAVANKFRSLWGKEAGWAHSVLFTADLRAFSERLVAKVETKKEE 359

Query: 419 GTITETP-GAVIEKSGKVIEAKPKIDEDKRKSE 450
            TI   P G  IEK  K +E K      KR+ E
Sbjct: 360 ETIKHDPDGVTIEK--KTVEEKAVSKRVKREPE 390

Source: Macrophomina phaseolina MS6

Species: Macrophomina phaseolina

Genus: Macrophomina

Family: Botryosphaeriaceae

Order: Botryosphaeriales

Class: Dothideomycetes

Phylum: Ascomycota

Superkingdom: Eukaryota
>gi|302414572|ref|XP_003005118.1| N-glycosylase/DNA lyase [Verticillium albo-atrum VaMs.102] gi|261356187|gb|EEY18615.1| N-glycosylase/DNA lyase [Verticillium albo-atrum VaMs.102] Back     alignment and taxonomy information
>gi|320031289|gb|EFW13262.1| DNA N-glycosylase [Coccidioides posadasii str. Silveira] Back     alignment and taxonomy information
>gi|119189251|ref|XP_001245232.1| hypothetical protein CIMG_04673 [Coccidioides immitis RS] gi|392868135|gb|EAS33878.2| 8-oxoguanine DNA-glycosylase (ogg) [Coccidioides immitis RS] Back     alignment and taxonomy information
>gi|67541024|ref|XP_664286.1| hypothetical protein AN6682.2 [Aspergillus nidulans FGSC A4] gi|40738435|gb|EAA57625.1| hypothetical protein AN6682.2 [Aspergillus nidulans FGSC A4] gi|259480266|tpe|CBF71239.1| TPA: mitochondrial glycosylase/lyase (Eurofung) [Aspergillus nidulans FGSC A4] Back     alignment and taxonomy information
>gi|346979375|gb|EGY22827.1| N-glycosylase/DNA lyase [Verticillium dahliae VdLs.17] Back     alignment and taxonomy information
>gi|303323231|ref|XP_003071607.1| HhH-GPD family base excision DNA repair protein [Coccidioides posadasii C735 delta SOWgp] gi|240111309|gb|EER29462.1| HhH-GPD family base excision DNA repair protein [Coccidioides posadasii C735 delta SOWgp] Back     alignment and taxonomy information
>gi|380096158|emb|CCC06205.1| unnamed protein product [Sordaria macrospora k-hell] Back     alignment and taxonomy information
>gi|451849635|gb|EMD62938.1| hypothetical protein COCSADRAFT_37822 [Cochliobolus sativus ND90Pr] Back     alignment and taxonomy information
>gi|242803785|ref|XP_002484244.1| DNA N-glycosylase, putative [Talaromyces stipitatus ATCC 10500] gi|218717589|gb|EED17010.1| DNA N-glycosylase, putative [Talaromyces stipitatus ATCC 10500] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query457
UNIPROTKB|F1P1Z7303 OGG1 "Uncharacterized protein" 0.310 0.468 0.355 4.6e-52
RGD|621168345 Ogg1 "8-oxoguanine DNA glycosy 0.326 0.431 0.352 1.2e-43
UNIPROTKB|O70249345 Ogg1 "N-glycosylase/DNA lyase" 0.326 0.431 0.352 1.2e-43
MGI|MGI:1097693345 Ogg1 "8-oxoguanine DNA-glycosy 0.326 0.431 0.352 5.3e-43
ASPGD|ASPL0000004747414 AN6682 [Emericella nidulans (t 0.490 0.541 0.334 2.8e-42
UNIPROTKB|F1SQF9345 OGG1 "Uncharacterized protein" 0.334 0.443 0.343 1.4e-40
ZFIN|ZDB-GENE-070112-932391 ogg1 "8-oxoguanine DNA glycosy 0.177 0.207 0.614 1.7e-40
UNIPROTKB|O15527345 OGG1 "N-glycosylase/DNA lyase" 0.326 0.431 0.345 2.6e-38
UNIPROTKB|F1MPV2347 OGG1 "Uncharacterized protein" 0.326 0.429 0.339 8.2e-38
UNIPROTKB|F1PYD9344 OGG1 "Uncharacterized protein" 0.326 0.433 0.345 1.4e-37
UNIPROTKB|F1P1Z7 OGG1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
 Score = 248 (92.4 bits), Expect = 4.6e-52, Sum P(3) = 4.6e-52
 Identities = 53/149 (35%), Positives = 80/149 (53%)

Query:    16 CPAIEXXXXXXXXXXXXFRWKQLTSDEKKLGNRFQGVFKECVWTLWADPSYLHYQVFSQH 75
             CP  E            FRW+     E   G  + GV  + VWTL  +   L Y V+ + 
Sbjct:    27 CPPAELRLDLVLASGQAFRWR-----ESSPG-AWTGVLGDRVWTLRQERDRLWYTVYGRE 80

Query:    76 KLNANSVETMLKEYFRLDENLPELYAEWSNRDAFFRQTCGDFVGIRMLNQDLTENIFSFL 135
                  + + +L++YF+LD  L  LY  W   D  F QT   F G+R+L QD  E + SF+
Sbjct:    81 TPGPET-DRILRDYFQLDVGLAALYRTWGAADPLFCQTATAFPGVRVLRQDPVECLLSFI 139

Query:   136 CSSNNNIARISGMIDKMCKEYGTLICTLD 164
             C+SNN++ARI+ MI+++C+ +G  +C+LD
Sbjct:   140 CTSNNHVARITTMIERLCQAFGQHLCSLD 168
GO:0003684 "damaged DNA binding" evidence=IEA
GO:0006289 "nucleotide-excision repair" evidence=IEA
GO:0005739 "mitochondrion" evidence=IEA
GO:0006284 "base-excision repair" evidence=IEA
GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA
GO:0006979 "response to oxidative stress" evidence=IEA
GO:0008017 "microtubule binding" evidence=IEA
GO:0009314 "response to radiation" evidence=IEA
GO:0016363 "nuclear matrix" evidence=IEA
GO:0016607 "nuclear speck" evidence=IEA
GO:0033158 "regulation of protein import into nucleus, translocation" evidence=IEA
GO:0034039 "8-oxo-7,8-dihydroguanine DNA N-glycosylase activity" evidence=IEA
RGD|621168 Ogg1 "8-oxoguanine DNA glycosylase" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|O70249 Ogg1 "N-glycosylase/DNA lyase" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:1097693 Ogg1 "8-oxoguanine DNA-glycosylase 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
ASPGD|ASPL0000004747 AN6682 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
UNIPROTKB|F1SQF9 OGG1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-070112-932 ogg1 "8-oxoguanine DNA glycosylase" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|O15527 OGG1 "N-glycosylase/DNA lyase" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1MPV2 OGG1 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1PYD9 OGG1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9V3I8OGG1_DROME4, ., 2, ., 9, 9, ., 1, 80.33110.60610.8075yesN/A
O70249OGG1_RAT4, ., 2, ., 9, 9, ., 1, 80.35560.61480.8144yesN/A
O08760OGG1_MOUSE4, ., 2, ., 9, 9, ., 1, 80.35250.61480.8144yesN/A

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer4.2.990.766
4th Layer4.2.99.180.824
3rd Layer3.2.20.766

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query457
TIGR00588310 TIGR00588, ogg, 8-oxoguanine DNA-glycosylase (ogg) 4e-56
pfam07934113 pfam07934, OGG_N, 8-oxoguanine DNA glycosylase, N- 8e-28
COG0122285 COG0122, AlkA, 3-methyladenine DNA glycosylase/8-o 2e-18
TIGR00588310 TIGR00588, ogg, 8-oxoguanine DNA-glycosylase (ogg) 4e-14
pfam07934113 pfam07934, OGG_N, 8-oxoguanine DNA glycosylase, N- 8e-11
cd00056158 cd00056, ENDO3c, endonuclease III; includes endonu 1e-10
smart00478149 smart00478, ENDO3c, endonuclease III 8e-08
pfam00730144 pfam00730, HhH-GPD, HhH-GPD superfamily base excis 1e-05
COG0122285 COG0122, AlkA, 3-methyladenine DNA glycosylase/8-o 2e-04
COG0177211 COG0177, Nth, Predicted EndoIII-related endonuclea 6e-04
>gnl|CDD|211589 TIGR00588, ogg, 8-oxoguanine DNA-glycosylase (ogg) Back     alignment and domain information 
 Score =  188 bits (478), Expect = 4e-56
 Identities = 109/324 (33%), Positives = 157/324 (48%), Gaps = 48/324 (14%)

Query: 9   HLSGKILCPAIELSLTLTLLGGQSFRWKQLTSDEKKLGNRFQGVFK---ECVWTLWADPS 65
           H    I  P  EL L L L  GQSFRW+    +E      + G+     + VWTL     
Sbjct: 3   HRWASIPIPRSELRLDLVLRSGQSFRWRW---EESP--AHWSGLLVIADQPVWTLTQTEE 57

Query: 66  YLHYQVFSQHKLNANSVETMLKEYFRLDENLPELYAEWSNRDAFFRQTCGDFVGIRMLNQ 125
            L   V+   K   + +ET L++YF+LD +L +LY  W + D  F+     F G+R+L Q
Sbjct: 58  QLLCTVYRGDKPTQDELETKLEKYFQLDVSLAQLYTHWGSVDKHFQYVAQKFQGVRLLRQ 117

Query: 126 DLTENIFSFLCSSNNNIARISGMIDKMCKEYGTLICTLDSDGNLVGDCEKGRSHAKSCPA 185
           D  E + SF+CSSNNNIARI+ M++++C+ +G  + TLD                     
Sbjct: 118 DPFECLISFICSSNNNIARITRMVERLCQAFGPRLITLDG-------------------- 157

Query: 186 VTKFFAFPSIDALARPAVEAKLRQLGFGYRAKFIQKSAEYIIQG-GGESWLERLGGKSYE 244
           VT +  FPS+ AL  P  EA LR+LG GYRA++I+++A  +++  GG +WL+++ G SYE
Sbjct: 158 VT-YHGFPSLHALTGPEAEAHLRKLGLGYRARYIRETARALLEEQGGRAWLQQIRGASYE 216

Query: 245 EAREELQRLPGIGAKVGD----------GVFKEHVWTLWADPSYLHYQVYSQHKLNT--- 291
           +ARE L  LPG+G KV D                V         +  + Y  H   +   
Sbjct: 217 DAREALCELPGVGPKVADCICLMGLDKPQAVPVDVHV-----WRIANRDYPWHPKTSRAK 271

Query: 292 NSVETMLKEYFRLDENLPELYAEW 315
                  KE      +L   YA W
Sbjct: 272 GPSPFARKELGNFFRSLWGPYAGW 295

All proteins in this family for which functions are known are 8-oxo-guanaine DNA glycosylases that function in base excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is distantly realted to the Nth-MutY superfamily [DNA metabolism, DNA replication, recombination, and repair]. Length = 310
>gnl|CDD|219650 pfam07934, OGG_N, 8-oxoguanine DNA glycosylase, N-terminal domain Back     alignment and domain information
>gnl|CDD|223200 COG0122, AlkA, 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|211589 TIGR00588, ogg, 8-oxoguanine DNA-glycosylase (ogg) Back     alignment and domain information
>gnl|CDD|219650 pfam07934, OGG_N, 8-oxoguanine DNA glycosylase, N-terminal domain Back     alignment and domain information
>gnl|CDD|238013 cd00056, ENDO3c, endonuclease III; includes endonuclease III (DNA-(apurinic or apyrimidinic site) lyase), alkylbase DNA glycosidases (Alka-family) and other DNA glycosidases Back     alignment and domain information
>gnl|CDD|214684 smart00478, ENDO3c, endonuclease III Back     alignment and domain information
>gnl|CDD|216088 pfam00730, HhH-GPD, HhH-GPD superfamily base excision DNA repair protein Back     alignment and domain information
>gnl|CDD|223200 COG0122, AlkA, 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|223255 COG0177, Nth, Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 457
KOG2875|consensus323 100.0
TIGR00588310 ogg 8-oxoguanine DNA-glycosylase (ogg). All protei 100.0
COG0122285 AlkA 3-methyladenine DNA glycosylase/8-oxoguanine 100.0
PRK10308283 3-methyl-adenine DNA glycosylase II; Provisional 100.0
PF07934117 OGG_N: 8-oxoguanine DNA glycosylase, N-terminal do 99.96
cd00056158 ENDO3c endonuclease III; includes endonuclease III 99.93
TIGR01083191 nth endonuclease III. This equivalog model identif 99.91
PRK10702211 endonuclease III; Provisional 99.9
KOG1918|consensus254 99.87
COG0177211 Nth Predicted EndoIII-related endonuclease [DNA re 99.87
smart00478149 ENDO3c endonuclease III. includes endonuclease III 99.87
PRK13913218 3-methyladenine DNA glycosylase; Provisional 99.85
TIGR01084275 mutY A/G-specific adenine glycosylase. This equiva 99.84
PRK10880 350 adenine DNA glycosylase; Provisional 99.8
PRK01229208 N-glycosylase/DNA lyase; Provisional 99.74
PRK13910289 DNA glycosylase MutY; Provisional 99.62
PF00730108 HhH-GPD: HhH-GPD superfamily base excision DNA rep 99.48
TIGR03252177 uncharacterized HhH-GPD family protein. This model 99.47
COG1194342 MutY A/G-specific DNA glycosylase [DNA replication 99.32
COG2231215 Uncharacterized protein related to Endonuclease II 99.27
KOG1921|consensus286 99.25
KOG2457|consensus 555 98.2
PF06029116 AlkA_N: AlkA N-terminal domain; InterPro: IPR01031 97.83
COG1059210 Thermostable 8-oxoguanine DNA glycosylase [DNA rep 97.68
PF0063330 HHH: Helix-hairpin-helix motif; InterPro: IPR00044 95.89
PF07934117 OGG_N: 8-oxoguanine DNA glycosylase, N-terminal do 86.51
PRK13901196 ruvA Holliday junction DNA helicase RuvA; Provisio 86.5
smart00483334 POLXc DNA polymerase X family. includes vertebrate 86.47
PRK14600186 ruvA Holliday junction DNA helicase RuvA; Provisio 84.85
PRK14601183 ruvA Holliday junction DNA helicase RuvA; Provisio 82.24
smart0027826 HhH1 Helix-hairpin-helix DNA-binding motif class 1 81.95
PRK14606188 ruvA Holliday junction DNA helicase RuvA; Provisio 81.32
PRK14606188 ruvA Holliday junction DNA helicase RuvA; Provisio 80.46
PRK14601183 ruvA Holliday junction DNA helicase RuvA; Provisio 80.35
PRK14605194 ruvA Holliday junction DNA helicase RuvA; Provisio 80.28
>KOG2875|consensus Back     alignment and domain information 
Probab=100.00  E-value=2.2e-78  Score=591.64  Aligned_cols=308  Identities=43%  Similarity=0.768  Sum_probs=279.0

Q ss_pred             ccccccccccCCcccccccccccccccceeecCCCCcccCCeEEEEECCeEEEEEEcCCe-EEEEEEeCCCCCHHHHHHH
Q psy4725           7 VHHLSGKILCPAIELSLTLTLLGGQSFRWKQLTSDEKKLGNRFQGVFKECVWTLWADPSY-LHYQVFSQHKLNANSVETM   85 (457)
Q Consensus         7 ~~~~~~~l~~~~~~l~L~~tL~~GQ~FrW~~~~~~~~~~~~~~~gv~~~~v~~l~q~~~~-L~y~~~~~~~~~~~~~~~~   85 (457)
                      .+..|..|+|+..|++|+.||.+||+|||++.+      ...|.||+|++||.++|++.. +.|++....+.+..+..+.
T Consensus         4 t~~~w~~i~~~~sEl~L~~tL~sGQsFRWr~~~------~~~ysG~lg~~v~~L~Q~ee~~~~y~~~~s~~~p~~del~~   77 (323)
T KOG2875|consen    4 TPALWASIPCSRSELDLELTLPSGQSFRWREQS------PAHYSGVLGDQVWTLTQTEEQCTVYRGDKSASRPTPDELEA   77 (323)
T ss_pred             ccccceeccCCHHHcchhhhccCCceeeeecCC------cccccceeccEEEEEEecCCceEEEEeecCCCCCChHHHHH
Confidence            456799999999999999999999999999765      689999999999999999976 6677755533344455568


Q ss_pred             HHHhhcCCCCHHHHHHHHhccChhHHHhhhhhCCccccCCCHHHHHHHHHHhccccHHHHHHHHHHHHHHhCCcccccCC
Q psy4725          86 LKEYFRLDENLPELYAEWSNRDAFFRQTCGDFVGIRMLNQDLTENIFSFLCSSNNNIARISGMIDKMCKEYGTLICTLDS  165 (457)
Q Consensus        86 lr~YFdLD~DL~~l~~~~~~~Dp~L~~li~~~~GLRILrqDPfE~LIsfIcSQNnnI~rI~~mi~rL~~~yGe~l~~~~g  165 (457)
                      |+.||+||++|..+|.+|...|+.|..+..  .|+|+|||||||||||||||+||||+||++|+++||..||..|..++|
T Consensus        78 i~~yf~ldv~L~~l~~~W~~~D~~F~~la~--qgvRlLrQdP~E~lfSFiCSSNNNIaRIT~Mve~fc~~fG~~i~~~dg  155 (323)
T KOG2875|consen   78 ISKYFQLDVTLAQLYHHWGSVDDHFQELAQ--QGVRLLRQDPIECLFSFICSSNNNIARITGMVERFCQAFGPRIIQLDG  155 (323)
T ss_pred             HHHHHhheeeHHHHHHHhCcCChHHHHHHH--hhhHHHhcCcHHHHHHHHhcCCCcHHHHHHHHHHHHHhhCcceEeecC
Confidence            999999999999999999999999999988  699999999999999999999999999999999999999999998888


Q ss_pred             CCCCcCcccCCCCCCCCCCcccccccCCcHHHHcCCChHHHHHhcCCchhHHHHHHHHHHHHHcCCC-CcchhhcCCCHH
Q psy4725         166 DGNLVGDCEKGRSHAKSCPAVTKFFAFPSIDALARPAVEAKLRQLGFGYRAKFIQKSAEYIIQGGGE-SWLERLGGKSYE  244 (457)
Q Consensus       166 ~~~~~~~~~~~r~~~~~~p~~~~~ysFPTpe~LA~~~~Ee~LR~~g~gYRAkyI~~~A~~~~e~~G~-~~l~~l~~~~~~  244 (457)
                                           ..||.|||.++|+....|+.||++|||||||||.++|++|.+.+|. .||++|++++||
T Consensus       156 ---------------------~~~h~FPsl~~L~g~~~Ea~LR~~gfGYRAkYI~~ta~~l~~~~g~~~wLqsl~~~~ye  214 (323)
T KOG2875|consen  156 ---------------------VDYHGFPSLQALAGPEVEAELRKLGFGYRAKYISATARALQEKQGGLAWLQSLRKSSYE  214 (323)
T ss_pred             ---------------------cccccCccHHHhcCcHhHHHHHHcCcchhHHHHHHHHHHHHHhcccchHHHHHhcccHH
Confidence                                 7899999999999767899999999999999999999999996555 899999999999


Q ss_pred             HHHHHhhcCCCccccCCCcccccccccccCCCccchhhhhhccccccchHHHHHHHHhhhhcCchhhHhhhhchhhhhhc
Q psy4725         245 EAREELQRLPGIGAKVGDGVFKEHVWTLWADPSYLHYQVYSQHKLNTNSVETMLKEYFRLDENLPELYAEWSNRDAFFRQ  324 (457)
Q Consensus       245 eare~L~~LpGVGpK~a~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (457)
                      ||+++|+.+||||+|                                                                 
T Consensus       215 ear~~L~~lpGVG~K-----------------------------------------------------------------  229 (323)
T KOG2875|consen  215 EAREALCSLPGVGPK-----------------------------------------------------------------  229 (323)
T ss_pred             HHHHHHhcCCCCcch-----------------------------------------------------------------
Confidence            999999999999999                                                                 


Q ss_pred             cCChHHHHHHHHHhcCCCCccccchhHHHHHHhhcccCCCCCCCCCHHHHHHHHHHHHhhhcCcHHHHHHHHHhcccccc
Q psy4725         325 TCGDFVADCICLMSLSHLQAVPVDTHVYQIACNHYHFQKSTSKTLTPAVYNQIRAFFADKFGKYAGWAHSILFCADLKKF  404 (457)
Q Consensus       325 ~~~~~vAdci~l~~l~~~~~~PvD~~v~~~a~~~y~~~~~~~~~lt~~~y~~i~~~~~~~fg~~ag~A~~~lf~~~l~~~  404 (457)
                           ||||||||||+++++||||+||+|||.+.+++.....|.++|+.|.++..+|.++||+||||||.+||.+...-+
T Consensus       230 -----VADCI~Lm~l~~~~~VPVDvHi~ria~~y~l~~~~g~k~l~~ki~~ev~~~f~~~~G~YAGwAQ~~lfsa~~~m~  304 (323)
T KOG2875|consen  230 -----VADCICLMSLDKLSAVPVDVHIWRIAQDYILPGLSGAKELTPKINGEVSNFFRSLWGEYAGWAQAVLFSAQKSMV  304 (323)
T ss_pred             -----HhhhhhhhhcCCCCcccchhhHHHHhhcccCCCccccccCCcchhHHHHHHHHHHhcccccchhheeeccchhhh
Confidence                 999999999999999999999999999777777777778999999999999999999999999999997665555


Q ss_pred             ccCCCcccc
Q psy4725         405 QAKPGEEKV  413 (457)
Q Consensus       405 ~~~~~~~~~  413 (457)
                      +..+...++
T Consensus       305 ~~~s~~~~k  313 (323)
T KOG2875|consen  305 QSTSAPATK  313 (323)
T ss_pred             cccccccch
Confidence            554444433

>TIGR00588 ogg 8-oxoguanine DNA-glycosylase (ogg) Back     alignment and domain information
>COG0122 AlkA 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK10308 3-methyl-adenine DNA glycosylase II; Provisional Back     alignment and domain information
>PF07934 OGG_N: 8-oxoguanine DNA glycosylase, N-terminal domain; InterPro: IPR012904 The presence of 8-oxoguanine residues in DNA can give rise to G-C to T-A transversion mutations Back     alignment and domain information
>cd00056 ENDO3c endonuclease III; includes endonuclease III (DNA-(apurinic or apyrimidinic site) lyase), alkylbase DNA glycosidases (Alka-family) and other DNA glycosidases Back     alignment and domain information
>TIGR01083 nth endonuclease III Back     alignment and domain information
>PRK10702 endonuclease III; Provisional Back     alignment and domain information
>KOG1918|consensus Back     alignment and domain information
>COG0177 Nth Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair] Back     alignment and domain information
>smart00478 ENDO3c endonuclease III Back     alignment and domain information
>PRK13913 3-methyladenine DNA glycosylase; Provisional Back     alignment and domain information
>TIGR01084 mutY A/G-specific adenine glycosylase Back     alignment and domain information
>PRK10880 adenine DNA glycosylase; Provisional Back     alignment and domain information
>PRK01229 N-glycosylase/DNA lyase; Provisional Back     alignment and domain information
>PRK13910 DNA glycosylase MutY; Provisional Back     alignment and domain information
>PF00730 HhH-GPD: HhH-GPD superfamily base excision DNA repair protein This entry corresponds to Endonuclease III This entry corresponds to Alkylbase DNA glycosidase; InterPro: IPR003265 Endonuclease III (4 Back     alignment and domain information
>TIGR03252 uncharacterized HhH-GPD family protein Back     alignment and domain information
>COG1194 MutY A/G-specific DNA glycosylase [DNA replication, recombination, and repair] Back     alignment and domain information
>COG2231 Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG1921|consensus Back     alignment and domain information
>KOG2457|consensus Back     alignment and domain information
>PF06029 AlkA_N: AlkA N-terminal domain; InterPro: IPR010316 This domain is found at the N terminus of bacterial AlkA 3 Back     alignment and domain information
>COG1059 Thermostable 8-oxoguanine DNA glycosylase [DNA replication, recombination, and repair] Back     alignment and domain information
>PF00633 HHH: Helix-hairpin-helix motif; InterPro: IPR000445 The HhH motif is an around 20 amino acids domain present in prokaryotic and eukaryotic non-sequence-specific DNA binding proteins [, , ] Back     alignment and domain information
>PF07934 OGG_N: 8-oxoguanine DNA glycosylase, N-terminal domain; InterPro: IPR012904 The presence of 8-oxoguanine residues in DNA can give rise to G-C to T-A transversion mutations Back     alignment and domain information
>PRK13901 ruvA Holliday junction DNA helicase RuvA; Provisional Back     alignment and domain information
>smart00483 POLXc DNA polymerase X family Back     alignment and domain information
>PRK14600 ruvA Holliday junction DNA helicase RuvA; Provisional Back     alignment and domain information
>PRK14601 ruvA Holliday junction DNA helicase RuvA; Provisional Back     alignment and domain information
>smart00278 HhH1 Helix-hairpin-helix DNA-binding motif class 1 Back     alignment and domain information
>PRK14606 ruvA Holliday junction DNA helicase RuvA; Provisional Back     alignment and domain information
>PRK14606 ruvA Holliday junction DNA helicase RuvA; Provisional Back     alignment and domain information
>PRK14601 ruvA Holliday junction DNA helicase RuvA; Provisional Back     alignment and domain information
>PRK14605 ruvA Holliday junction DNA helicase RuvA; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query457
1n3a_A317 Structural And Biochemical Exploration Of A Critica 2e-42
1n3a_A317 Structural And Biochemical Exploration Of A Critica 1e-13
1n39_A317 Structural And Biochemical Exploration Of A Critica 2e-42
1n39_A317 Structural And Biochemical Exploration Of A Critica 7e-14
1ko9_A345 Native Structure Of The Human 8-Oxoguanine Dna Glyc 2e-42
1ko9_A345 Native Structure Of The Human 8-Oxoguanine Dna Glyc 5e-16
1n3c_A317 Structural And Biochemical Exploration Of A Critica 2e-42
1n3c_A317 Structural And Biochemical Exploration Of A Critica 8e-14
1hu0_A324 Crystal Structure Of An Hogg1-Dna Borohydride Trapp 2e-42
1hu0_A324 Crystal Structure Of An Hogg1-Dna Borohydride Trapp 2e-14
1fn7_A317 Coupling Of Damage Recognition And Catalysis By A H 2e-42
1fn7_A317 Coupling Of Damage Recognition And Catalysis By A H 2e-14
2noe_A325 Structure Of Catalytically Inactive G42a Human 8-Ox 4e-42
2noe_A325 Structure Of Catalytically Inactive G42a Human 8-Ox 2e-14
1ebm_A317 Crystal Structure Of The Human 8-Oxoguanine Glycosy 6e-42
1ebm_A317 Crystal Structure Of The Human 8-Oxoguanine Glycosy 2e-14
2noz_A325 Structure Of Q315f Human 8-Oxoguanine Glycosylase D 7e-42
2noz_A325 Structure Of Q315f Human 8-Oxoguanine Glycosylase D 9e-14
2noh_A325 Structure Of Catalytically Inactive Q315a Human 8- 7e-42
2noh_A325 Structure Of Catalytically Inactive Q315a Human 8- 4e-14
2xhi_A360 Separation-Of-Function Mutants Unravel The Dual Rea 1e-41
2xhi_A360 Separation-Of-Function Mutants Unravel The Dual Rea 3e-14
2nol_A325 Structure Of Catalytically Inactive Human 8-Oxoguan 1e-41
2nol_A325 Structure Of Catalytically Inactive Human 8-Oxoguan 5e-14
3ih7_A316 Crystal Structure Of Catalytically Active Human 8-O 1e-41
3ih7_A316 Crystal Structure Of Catalytically Active Human 8-O 6e-14
2i5w_A315 Structure Of Hogg1 Crosslinked To Dna Sampling A No 3e-41
2i5w_A315 Structure Of Hogg1 Crosslinked To Dna Sampling A No 8e-14
1yqk_A319 Human 8-Oxoguanine Glycosylase Crosslinked With Gua 3e-41
1yqk_A319 Human 8-Oxoguanine Glycosylase Crosslinked With Gua 3e-14
3ktu_A317 Structure Of Human 8-Oxoguanine Glycosylase 1 Bound 3e-41
3ktu_A317 Structure Of Human 8-Oxoguanine Glycosylase 1 Bound 3e-14
2nof_A325 Structure Of Q315f Human 8-oxoguanine Glycosylase P 3e-41
2nof_A325 Structure Of Q315f Human 8-oxoguanine Glycosylase P 5e-14
2noi_A325 Structure Of G42a Human 8-Oxoguanine Glycosylase Cr 4e-41
2noi_A325 Structure Of G42a Human 8-Oxoguanine Glycosylase Cr 3e-14
1yql_A319 Catalytically Inactive Hogg1 Crosslinked With 7-Dea 6e-41
1yql_A319 Catalytically Inactive Hogg1 Crosslinked With 7-Dea 3e-14
2nob_A325 Structure Of Catalytically Inactive H270a Human 8- 3e-40
2nob_A325 Structure Of Catalytically Inactive H270a Human 8- 3e-13
3f0z_A292 Crystal Structure Of Clostridium Acetobutylicum 8-O 2e-11
3f10_A292 Crystal Structure Of Clostridium Acetobutylicum 8-O 5e-11
3i0x_A291 Crystal Structure Of Clostridium Acetobutylicum 8-O 5e-11
3i0w_A290 Crystal Structure Of Clostridium Acetobutylicum 8-O 5e-11
>pdb|1N3A|A Chain A, Structural And Biochemical Exploration Of A Critical Amino Acid In Human 8-Oxoguanine Glycosylase Length = 317 Back     alignment and structure 
Iteration: 1

 Score =  170 bits (430), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 109/329 (33%), Positives = 159/329 (48%), Gaps = 48/329 (14%)
Query: 10  LSGKILCPAIEXXXXXXXXXXXXFRWKQLTSDEKKLGNRFQGVFKECVWTLWADPSYLHY 69
           L   I CP  E            FRW++ +         + GV  + VWTL      LH 
Sbjct: 14  LWASIPCPRSELRLDLVLPSGQSFRWREQSP------AHWSGVLADQVWTLTQTEEQLHC 67
Query: 70  QVFSQHKLNANSVET----MLKEYFRLDENLPELYAEWSNRDAFFRQTCGDFVGIRMLNQ 125
            V+   K  A+         +++YF+LD  L +LY  W + D+ F++    F G+R+L Q
Sbjct: 68  TVYRGDKSQASRPTPDELEAVRKYFQLDVTLAQLYHHWGSVDSHFQEVAQKFQGVRLLRQ 127
Query: 126 DLTENIFSFLCSSNNNIARISGMIDKMCKEYGTLICTLDSDGNLVGDCEKGRSHAKSCPA 185
           D  E +FSF+CSSNNNIARI+GM++++C+ +G  +  LD                     
Sbjct: 128 DPIECLFSFICSSNNNIARITGMVERLCQAFGPRLIQLDD-------------------- 167
Query: 186 VTKFFAFPSIDALARPAVEAKLRQLGFGYRAKFIQKSAEYII-QGGGESWLERLGGKSYE 244
              +  FPS+ ALA P VEA LR+LG GYRA+++  SA  I+ + GG +WL++L   SYE
Sbjct: 168 -VTYHGFPSLQALAGPEVEAHLRKLGLGYRARYVSASARAILEEQGGLAWLQQLRESSYE 226
Query: 245 EAREELQRLPGIGAKVGDGV------------FKEHVWTLWADPSYLHYQVYSQHKLNTN 292
           EA + L  LPG+G KV D +             + H+W + A   Y  +   SQ K  + 
Sbjct: 227 EAHKALCILPGVGTKVADCICLMALDKPQAVPVQVHMWHI-AQRDYSWHPTTSQAKGPSP 285
Query: 293 SVETMLKEYFRLDENLPELYAEWSNRDAF 321
                L  +FR   +L   YA W+    F
Sbjct: 286 QTNKELGNFFR---SLWGPYAGWAQAVLF 311
>pdb|1N3A|A Chain A, Structural And Biochemical Exploration Of A Critical Amino Acid In Human 8-Oxoguanine Glycosylase Length = 317 Back     alignment and structure
>pdb|1N39|A Chain A, Structural And Biochemical Exploration Of A Critical Amino Acid In Human 8-Oxoguanine Glycosylase Length = 317 Back     alignment and structure
>pdb|1N39|A Chain A, Structural And Biochemical Exploration Of A Critical Amino Acid In Human 8-Oxoguanine Glycosylase Length = 317 Back     alignment and structure
>pdb|1KO9|A Chain A, Native Structure Of The Human 8-Oxoguanine Dna Glycosylase Hogg1 Length = 345 Back     alignment and structure
>pdb|1KO9|A Chain A, Native Structure Of The Human 8-Oxoguanine Dna Glycosylase Hogg1 Length = 345 Back     alignment and structure
>pdb|1N3C|A Chain A, Structural And Biochemical Exploration Of A Critical Amino Acid In Human 8-oxoguanine Glycosylase Length = 317 Back     alignment and structure
>pdb|1N3C|A Chain A, Structural And Biochemical Exploration Of A Critical Amino Acid In Human 8-oxoguanine Glycosylase Length = 317 Back     alignment and structure
>pdb|1HU0|A Chain A, Crystal Structure Of An Hogg1-Dna Borohydride Trapped Intermediate Complex Length = 324 Back     alignment and structure
>pdb|1HU0|A Chain A, Crystal Structure Of An Hogg1-Dna Borohydride Trapped Intermediate Complex Length = 324 Back     alignment and structure
>pdb|1FN7|A Chain A, Coupling Of Damage Recognition And Catalysis By A Human Base-Excision Dna Repair Protein Length = 317 Back     alignment and structure
>pdb|1FN7|A Chain A, Coupling Of Damage Recognition And Catalysis By A Human Base-Excision Dna Repair Protein Length = 317 Back     alignment and structure
>pdb|2NOE|A Chain A, Structure Of Catalytically Inactive G42a Human 8-Oxoguanine Glycosylase Complexed To 8-Oxoguanine Dna Length = 325 Back     alignment and structure
>pdb|2NOE|A Chain A, Structure Of Catalytically Inactive G42a Human 8-Oxoguanine Glycosylase Complexed To 8-Oxoguanine Dna Length = 325 Back     alignment and structure
>pdb|1EBM|A Chain A, Crystal Structure Of The Human 8-Oxoguanine Glycosylase (Hogg1) Bound To A Substrate Oligonucleotide Length = 317 Back     alignment and structure
>pdb|1EBM|A Chain A, Crystal Structure Of The Human 8-Oxoguanine Glycosylase (Hogg1) Bound To A Substrate Oligonucleotide Length = 317 Back     alignment and structure
>pdb|2NOZ|A Chain A, Structure Of Q315f Human 8-Oxoguanine Glycosylase Distal Crosslink To 8-Oxoguanine Dna Length = 325 Back     alignment and structure
>pdb|2NOZ|A Chain A, Structure Of Q315f Human 8-Oxoguanine Glycosylase Distal Crosslink To 8-Oxoguanine Dna Length = 325 Back     alignment and structure
>pdb|2NOH|A Chain A, Structure Of Catalytically Inactive Q315a Human 8- Oxoguanine Glycosylase Complexed To 8-oxoguanine Dna Length = 325 Back     alignment and structure
>pdb|2NOH|A Chain A, Structure Of Catalytically Inactive Q315a Human 8- Oxoguanine Glycosylase Complexed To 8-oxoguanine Dna Length = 325 Back     alignment and structure
>pdb|2XHI|A Chain A, Separation-Of-Function Mutants Unravel The Dual Reaction Mode Of Human 8-Oxoguanine Dna Glycosylase Length = 360 Back     alignment and structure
>pdb|2XHI|A Chain A, Separation-Of-Function Mutants Unravel The Dual Reaction Mode Of Human 8-Oxoguanine Dna Glycosylase Length = 360 Back     alignment and structure
>pdb|2NOL|A Chain A, Structure Of Catalytically Inactive Human 8-Oxoguanine Glycosylase Distal Crosslink To Oxog Dna Length = 325 Back     alignment and structure
>pdb|2NOL|A Chain A, Structure Of Catalytically Inactive Human 8-Oxoguanine Glycosylase Distal Crosslink To Oxog Dna Length = 325 Back     alignment and structure
>pdb|3IH7|A Chain A, Crystal Structure Of Catalytically Active Human 8-Oxoguanine Glycosylase Distally Crosslinked To Guanine-Containing Dna Length = 316 Back     alignment and structure
>pdb|3IH7|A Chain A, Crystal Structure Of Catalytically Active Human 8-Oxoguanine Glycosylase Distally Crosslinked To Guanine-Containing Dna Length = 316 Back     alignment and structure
>pdb|2I5W|A Chain A, Structure Of Hogg1 Crosslinked To Dna Sampling A Normal G Adjacent To An Oxog Length = 315 Back     alignment and structure
>pdb|2I5W|A Chain A, Structure Of Hogg1 Crosslinked To Dna Sampling A Normal G Adjacent To An Oxog Length = 315 Back     alignment and structure
>pdb|1YQK|A Chain A, Human 8-Oxoguanine Glycosylase Crosslinked With Guanine Containing Dna Length = 319 Back     alignment and structure
>pdb|1YQK|A Chain A, Human 8-Oxoguanine Glycosylase Crosslinked With Guanine Containing Dna Length = 319 Back     alignment and structure
>pdb|3KTU|A Chain A, Structure Of Human 8-Oxoguanine Glycosylase 1 Bound To Fluorninated Oxog-Containing Dna Length = 317 Back     alignment and structure
>pdb|3KTU|A Chain A, Structure Of Human 8-Oxoguanine Glycosylase 1 Bound To Fluorninated Oxog-Containing Dna Length = 317 Back     alignment and structure
>pdb|2NOF|A Chain A, Structure Of Q315f Human 8-oxoguanine Glycosylase Proximal Crosslink To 8-oxoguanine Dna Length = 325 Back     alignment and structure
>pdb|2NOF|A Chain A, Structure Of Q315f Human 8-oxoguanine Glycosylase Proximal Crosslink To 8-oxoguanine Dna Length = 325 Back     alignment and structure
>pdb|2NOI|A Chain A, Structure Of G42a Human 8-Oxoguanine Glycosylase Crosslinked To Undamaged G-Containing Dna Length = 325 Back     alignment and structure
>pdb|2NOI|A Chain A, Structure Of G42a Human 8-Oxoguanine Glycosylase Crosslinked To Undamaged G-Containing Dna Length = 325 Back     alignment and structure
>pdb|1YQL|A Chain A, Catalytically Inactive Hogg1 Crosslinked With 7-Deaza-8- Azaguanine Containing Dna Length = 319 Back     alignment and structure
>pdb|1YQL|A Chain A, Catalytically Inactive Hogg1 Crosslinked With 7-Deaza-8- Azaguanine Containing Dna Length = 319 Back     alignment and structure
>pdb|2NOB|A Chain A, Structure Of Catalytically Inactive H270a Human 8- Oxoguanine Glycosylase Crosslinked To 8-Oxoguanine Dna Length = 325 Back     alignment and structure
>pdb|2NOB|A Chain A, Structure Of Catalytically Inactive H270a Human 8- Oxoguanine Glycosylase Crosslinked To 8-Oxoguanine Dna Length = 325 Back     alignment and structure
>pdb|3F0Z|A Chain A, Crystal Structure Of Clostridium Acetobutylicum 8-Oxoguanine GlycosylaseLYASE IN ITS APO-Form Length = 292 Back     alignment and structure
>pdb|3F10|A Chain A, Crystal Structure Of Clostridium Acetobutylicum 8-Oxoguanine Dna Glycosylase In Complex With 8-Oxoguanosine Length = 292 Back     alignment and structure
>pdb|3I0X|A Chain A, Crystal Structure Of Clostridium Acetobutylicum 8-Oxoguanine GlycosylaseLYASE IN COMPLEX WITH DSDNA CONTAINING ADENINE Opposite To 8-Oxog Length = 291 Back     alignment and structure
>pdb|3I0W|A Chain A, Crystal Structure Of Clostridium Acetobutylicum 8-Oxoguanine GlycosylaseLYASE IN COMPLEX WITH DSDNA CONTAINING CYTOSINE Opposite To 8-Oxog Length = 290 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query457
2xhi_A360 N-glycosylase/DNA lyase; lyase-DNA complex, lyase/ 4e-57
2xhi_A360 N-glycosylase/DNA lyase; lyase-DNA complex, lyase/ 1e-24
2xhi_A360 N-glycosylase/DNA lyase; lyase-DNA complex, lyase/ 2e-06
3i0w_A290 8-oxoguanine-DNA-glycosylase; OGG, cacogg, DNA, 8- 4e-51
3i0w_A290 8-oxoguanine-DNA-glycosylase; OGG, cacogg, DNA, 8- 1e-15
3i0w_A290 8-oxoguanine-DNA-glycosylase; OGG, cacogg, DNA, 8- 9e-05
2jhn_A295 ALKA, 3-methyladenine DNA-glycosylase; DNA repair, 1e-13
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-08
3fhg_A207 Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; hel 3e-05
3fhg_A207 Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; hel 7e-04
1mpg_A282 ALKA, 3-methyladenine DNA glycosylase II; DNA repa 4e-05
1kea_A221 Possible G-T mismatches repair enzyme; DNA repair, 3e-04
2yg9_A225 DNA-3-methyladenine glycosidase II, putative; hydr 4e-04
1kg2_A225 A/G-specific adenine glycosylase; DNA repair, hydr 4e-04
4e9f_A161 Methyl-CPG-binding domain protein 4; HHH DNA glyco 4e-04
>2xhi_A N-glycosylase/DNA lyase; lyase-DNA complex, lyase/DNA complex, separation-OF-function helix-hairpin-helix, DNA repair; HET: 8OG; 1.55A {Homo sapiens} PDB: 1ko9_A 1lwy_A* 1hu0_A* 1lwv_A* 1lww_A* 2noe_A* 2noh_A* 2nol_A* 1n3c_A* 1fn7_A* 2noz_A* 1yqk_A 1yqr_A* 1yql_A* 1yqm_A* 2noi_A 1ebm_A* 1m3q_A* 1m3h_A* 1n39_A* ... Length = 360 Back     alignment and structure
 Score =  191 bits (487), Expect = 4e-57
 Identities = 99/258 (38%), Positives = 141/258 (54%), Gaps = 32/258 (12%)

Query: 12  GKILCPAIELSLTLTLLGGQSFRWKQLTSDEKKLGNRFQGVFKECVWTLWADPSYLHYQV 71
             I CP  EL L L L  GQSFRW++ +         + GV  + VWTL      LH  V
Sbjct: 39  ASIPCPRSELRLDLVLPSGQSFRWREQS------PAHWSGVLADQVWTLTQTEEQLHCTV 92

Query: 72  FSQHKLNANSVET----MLKEYFRLDENLPELYAEWSNRDAFFRQTCGDFVGIRMLNQDL 127
           +   K  A+         +++YF+LD  L +LY  W + D+ F++    F G+R+L QD 
Sbjct: 93  YRGDKSQASRPTPDELEAVRKYFQLDVTLAQLYHHWGSVDSHFQEVAQKFQGVRLLRQDP 152

Query: 128 TENIFSFLCSSNNNIARISGMIDKMCKEYGTLICTLDSDGNLVGDCEKGRSHAKSCPAVT 187
            E +FSF+CSSNNNIARI+GM++++C+ +G  +  LD                       
Sbjct: 153 IECLFSFICSSNNNIARITGMVERLCQAFGPRLIQLDDV--------------------- 191

Query: 188 KFFAFPSIDALARPAVEAKLRQLGFGYRAKFIQKSAEYIIQG-GGESWLERLGGKSYEEA 246
            +  FPS+ ALA P VEA LR+LG GYRA+++  SA  I++  GG +WL++L   SYEEA
Sbjct: 192 TYHGFPSLQALAGPEVEAHLRKLGLGYRARYVSASARAILEEQGGLAWLQQLRESSYEEA 251

Query: 247 REELQRLPGIGAKVGDGV 264
            + L  LPG+G  V D +
Sbjct: 252 HKALCILPGVGTCVADKI 269
>2xhi_A N-glycosylase/DNA lyase; lyase-DNA complex, lyase/DNA complex, separation-OF-function helix-hairpin-helix, DNA repair; HET: 8OG; 1.55A {Homo sapiens} PDB: 1ko9_A 1lwy_A* 1hu0_A* 1lwv_A* 1lww_A* 2noe_A* 2noh_A* 2nol_A* 1n3c_A* 1fn7_A* 2noz_A* 1yqk_A 1yqr_A* 1yql_A* 1yqm_A* 2noi_A 1ebm_A* 1m3q_A* 1m3h_A* 1n39_A* ... Length = 360 Back     alignment and structure
>2xhi_A N-glycosylase/DNA lyase; lyase-DNA complex, lyase/DNA complex, separation-OF-function helix-hairpin-helix, DNA repair; HET: 8OG; 1.55A {Homo sapiens} PDB: 1ko9_A 1lwy_A* 1hu0_A* 1lwv_A* 1lww_A* 2noe_A* 2noh_A* 2nol_A* 1n3c_A* 1fn7_A* 2noz_A* 1yqk_A 1yqr_A* 1yql_A* 1yqm_A* 2noi_A 1ebm_A* 1m3q_A* 1m3h_A* 1n39_A* ... Length = 360 Back     alignment and structure
>3i0w_A 8-oxoguanine-DNA-glycosylase; OGG, cacogg, DNA, 8-OXOG, 8OXOG, glycosylase, cytosine, hydrolase,lyase/DNA complex; HET: 8OG; 1.73A {Clostridium acetobutylicum} PDB: 3i0x_A* 3f10_A* 3f0z_A Length = 290 Back     alignment and structure
>3i0w_A 8-oxoguanine-DNA-glycosylase; OGG, cacogg, DNA, 8-OXOG, 8OXOG, glycosylase, cytosine, hydrolase,lyase/DNA complex; HET: 8OG; 1.73A {Clostridium acetobutylicum} PDB: 3i0x_A* 3f10_A* 3f0z_A Length = 290 Back     alignment and structure
>3i0w_A 8-oxoguanine-DNA-glycosylase; OGG, cacogg, DNA, 8-OXOG, 8OXOG, glycosylase, cytosine, hydrolase,lyase/DNA complex; HET: 8OG; 1.73A {Clostridium acetobutylicum} PDB: 3i0x_A* 3f10_A* 3f0z_A Length = 290 Back     alignment and structure
>2jhn_A ALKA, 3-methyladenine DNA-glycosylase; DNA repair, N1-methyladenine, N3-methylcytosine, hyperthermophiles, hydrolase; HET: MBO MES; 1.8A {Archaeoglobus fulgidus} PDB: 2jhj_A Length = 295 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3fhg_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase, hydrolase; 1.90A {Sulfolobus solfataricus} Length = 207 Back     alignment and structure
>3fhg_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase, hydrolase; 1.90A {Sulfolobus solfataricus} Length = 207 Back     alignment and structure
>1mpg_A ALKA, 3-methyladenine DNA glycosylase II; DNA repair, base excision, methylation, ALK hydrolase; 1.80A {Escherichia coli} SCOP: a.96.1.3 d.129.1.2 PDB: 1diz_A 1pvs_A* 3cvs_A* 3cvt_A* 3cw7_A* 3cwa_A* 3cws_A* 3cwt_A* 3cwu_A* 3d4v_A* 3ogd_A* 3oh9_A* 3oh6_A* Length = 282 Back     alignment and structure
>1kea_A Possible G-T mismatches repair enzyme; DNA repair, DNA glycosylase, DNA mismatch, methylation; 2.00A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.96.1.2 Length = 221 Back     alignment and structure
>2yg9_A DNA-3-methyladenine glycosidase II, putative; hydrolase, DNA repair; 1.95A {Deinococcus radiodurans} PDB: 2yg8_A Length = 225 Back     alignment and structure
>1kg2_A A/G-specific adenine glycosylase; DNA repair, hydrolase; 1.20A {Escherichia coli} SCOP: a.96.1.2 PDB: 1kg3_A 1muy_A 1kg6_A 1kg5_A 1mun_A 1mud_A 1kg4_A 1weg_A 1wei_A* 1wef_A* 1kg7_A 1kqj_A Length = 225 Back     alignment and structure
>4e9f_A Methyl-CPG-binding domain protein 4; HHH DNA glycosylase family, hydrolase-DNA complex; HET: DNA 3DR; 1.79A {Homo sapiens} PDB: 4e9e_A* 4e9g_A* 4e9h_A* 4ea5_A* 4dk9_A* 1ngn_A 4ea4_A* 4ew4_A* 4evv_A* 4ew0_A* 3iho_A Length = 161 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query457
2xhi_A360 N-glycosylase/DNA lyase; lyase-DNA complex, lyase/ 100.0
3i0w_A290 8-oxoguanine-DNA-glycosylase; OGG, cacogg, DNA, 8- 100.0
2jhn_A295 ALKA, 3-methyladenine DNA-glycosylase; DNA repair, 100.0
4b21_A232 Probable DNA-3-methyladenine glycosylase 2; hydrol 100.0
1mpg_A282 ALKA, 3-methyladenine DNA glycosylase II; DNA repa 100.0
3s6i_A228 DNA-3-methyladenine glycosylase 1; DNA glycosylase 100.0
2yg9_A225 DNA-3-methyladenine glycosidase II, putative; hydr 100.0
2h56_A233 DNA-3-methyladenine glycosidase; 10174367, EC 3.2. 100.0
3fhg_A207 Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; hel 99.93
1orn_A226 Endonuclease III; DNA repair, DNA glycosylase, [4F 99.92
2abk_A211 Endonuclease III; DNA-repair, DNA glycosylase; 1.8 99.92
1pu6_A218 3-methyladenine DNA glycosylase; helix-hairpin-hel 99.91
1kg2_A225 A/G-specific adenine glycosylase; DNA repair, hydr 99.91
3n0u_A219 Probable N-glycosylase/DNA lyase; structural genom 99.89
1kea_A221 Possible G-T mismatches repair enzyme; DNA repair, 99.87
3fhf_A214 Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; hel 99.87
3fsp_A 369 A/G-specific adenine glycosylase; protein-DNA comp 99.86
3n5n_X287 A/G-specific adenine DNA glycosylase; alpha-helice 99.85
4e9f_A161 Methyl-CPG-binding domain protein 4; HHH DNA glyco 99.67
>2xhi_A N-glycosylase/DNA lyase; lyase-DNA complex, lyase/DNA complex, separation-OF-function helix-hairpin-helix, DNA repair; HET: 8OG; 1.55A {Homo sapiens} PDB: 1ko9_A 1lwy_A* 1hu0_A* 1lwv_A* 1lww_A* 2noe_A* 2noh_A* 2nol_A* 1n3c_A* 1fn7_A* 2noz_A* 1yqk_A 1yqr_A* 1yql_A* 1yqm_A* 2noi_A 1ebm_A* 1m3q_A* 1m3h_A* 1n39_A* ... Back     alignment and structure
Probab=100.00  E-value=4.4e-66  Score=525.12  Aligned_cols=318  Identities=42%  Similarity=0.780  Sum_probs=276.7

Q ss_pred             CCcccccccccccCCcccccccccccccccceeecCCCCcccCCeEEEEECCeEEEEEEcCCeEEEEEEeCCCC----CH
Q psy4725           4 GNTVHHLSGKILCPAIELSLTLTLLGGQSFRWKQLTSDEKKLGNRFQGVFKECVWTLWADPSYLHYQVFSQHKL----NA   79 (457)
Q Consensus         4 ~~~~~~~~~~l~~~~~~l~L~~tL~~GQ~FrW~~~~~~~~~~~~~~~gv~~~~v~~l~q~~~~L~y~~~~~~~~----~~   79 (457)
                      .++....|++|+|++.+|||.+||.|||||||++.+      ++.|.||++++|+.|+|+++.+.|+++++...    +.
T Consensus        31 ~~~~~~~w~~l~~~~~~~~L~~tl~~GQ~Frw~~~~------d~~w~~v~~~~v~~l~q~~~~v~~~~~~~~~~~~~~~~  104 (360)
T 2xhi_A           31 LASTPALWASIPCPRSELRLDLVLPSGQSFRWREQS------PAHWSGVLADQVWTLTQTEEQLHCTVYRGDKSQASRPT  104 (360)
T ss_dssp             TTTCGGGCEEEECCTTTCCHHHHTTTTSCSCCEEEE------TTEEEEEETTEEEEEEECSSEEEEEEECCSSSCCCCCC
T ss_pred             ccCCcCCceEecCCccccCHHHHcCCCCccceeecC------CCeEEEEECCEEEEEEEcCCEEEEEEecCcccccccch
Confidence            466678999999999999999999999999999986      57999999999999999999999998876432    33


Q ss_pred             HHHHHHHHHhhcCCCCHHHHHHHHhccChhHHHhhhhhCCccccCCCHHHHHHHHHHhccccHHHHHHHHHHHHHHhCCc
Q psy4725          80 NSVETMLKEYFRLDENLPELYAEWSNRDAFFRQTCGDFVGIRMLNQDLTENIFSFLCSSNNNIARISGMIDKMCKEYGTL  159 (457)
Q Consensus        80 ~~~~~~lr~YFdLD~DL~~l~~~~~~~Dp~L~~li~~~~GLRILrqDPfE~LIsfIcSQNnnI~rI~~mi~rL~~~yGe~  159 (457)
                      .++.+.+++||+||.|++.+++.|...||.|+++++.++|+|++++||||+||++|||||+|++++.+++++|+++||++
T Consensus       105 ~~~~~~~r~~fdLd~d~~~~~~~l~~~Dp~l~~l~~~~~glR~~~~dpfE~LV~~ILsQq~s~~~a~~~~~rL~~~~G~~  184 (360)
T 2xhi_A          105 PDELEAVRKYFQLDVTLAQLYHHWGSVDSHFQEVAQKFQGVRLLRQDPIECLFSFICSSNNNIARITGMVERLCQAFGPR  184 (360)
T ss_dssp             HHHHHHHHHHTTTTSCHHHHHHHHHHHCHHHHHHHHHSTTCCCCCCCHHHHHHHHHTTTTSCHHHHHHHHHHHHHHHSCE
T ss_pred             HHHHHHHHHhcccCCCHHHHHHHHHhhCHHHHHHHHHcCCCCCCCCCHHHHHHHHHHhCcCcHHHHHHHHHHHHHHhCCC
Confidence            47789999999999999999999988999999999999999999999999999999999999999999999999999998


Q ss_pred             ccccCCCCCCcCcccCCCCCCCCCCcccccccCCcHHHHcCCChHHHHHhcCCchhHHHHHHHHHHHHHc-CCCCcchhh
Q psy4725         160 ICTLDSDGNLVGDCEKGRSHAKSCPAVTKFFAFPSIDALARPAVEAKLRQLGFGYRAKFIQKSAEYIIQG-GGESWLERL  238 (457)
Q Consensus       160 l~~~~g~~~~~~~~~~~r~~~~~~p~~~~~ysFPTpe~LA~~~~Ee~LR~~g~gYRAkyI~~~A~~~~e~-~G~~~l~~l  238 (457)
                      +++.+|                     ..+|.||||++|++++.++.||.+||||||+||+++|+++.++ +|+.+|+.|
T Consensus       185 ~~~~~g---------------------~~~~~fPtpe~La~~~~ee~Lr~~Gl~~RA~~I~~~A~~i~~~~~G~~~L~~l  243 (360)
T 2xhi_A          185 LIQLDD---------------------VTYHGFPSLQALAGPEVEAHLRKLGLGYRARYVSASARAILEEQGGLAWLQQL  243 (360)
T ss_dssp             EEEETT---------------------EEEECCCCHHHHTSTTHHHHHHHTTCTTHHHHHHHHHHHHHHTTCTHHHHHGG
T ss_pred             cccCCC---------------------cccccCCCHHHHHcCCHHHHHHHcCCcHHHHHHHHHHHHHHhccCCccCHHHH
Confidence            866655                     6789999999999987667899999999999999999999985 456789999


Q ss_pred             cCCCHHHHHHHhhcCCCccccCCCcccccccccccCCCccchhhhhhccccccchHHHHHHHHhhhhcCchhhHhhhhch
Q psy4725         239 GGKSYEEAREELQRLPGIGAKVGDGVFKEHVWTLWADPSYLHYQVYSQHKLNTNSVETMLKEYFRLDENLPELYAEWSNR  318 (457)
Q Consensus       239 ~~~~~~eare~L~~LpGVGpK~a~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (457)
                      ..++++++++.|++|||||||                                                           
T Consensus       244 ~~~~~~~~~~~L~~LpGIGp~-----------------------------------------------------------  264 (360)
T 2xhi_A          244 RESSYEEAHKALCILPGVGTC-----------------------------------------------------------  264 (360)
T ss_dssp             GTSCHHHHHHHHTTSTTCCHH-----------------------------------------------------------
T ss_pred             hcCCHHHHHHHHHhCCCCCHH-----------------------------------------------------------
Confidence            999999999999999999999                                                           


Q ss_pred             hhhhhccCChHHHHHHHHHhcCCCCccccchhHHHHHHhhcccCC--CCCCCCCHHHHHHHHHHHHhhhcCcHHHHHHHH
Q psy4725         319 DAFFRQTCGDFVADCICLMSLSHLQAVPVDTHVYQIACNHYHFQK--STSKTLTPAVYNQIRAFFADKFGKYAGWAHSIL  396 (457)
Q Consensus       319 ~~~~~~~~~~~vAdci~l~~l~~~~~~PvD~~v~~~a~~~y~~~~--~~~~~lt~~~y~~i~~~~~~~fg~~ag~A~~~l  396 (457)
                                 |||||++|+++++++|||||||.|++.+.|....  ...++++++.|.++++++.+.||||+||||+||
T Consensus       265 -----------TA~~ill~alg~pd~fpvDthV~Ri~~r~~gl~~~~~~~k~~~~~~~~~l~~~~~e~w~p~~~~a~~yL  333 (360)
T 2xhi_A          265 -----------VADKICLMALDKPQAVPVNVHMWHIAQRDYSWHPTTSQAKGPSPQTNKELGNFFRSLWGPYAGWAQAVL  333 (360)
T ss_dssp             -----------HHHHHHHHHSCCTTCCCCSHHHHHHHHHHHCCCCSSCSCSSCCHHHHHHHHHHHHHHHCTTHHHHHHHH
T ss_pred             -----------HHHHHHHHhCCCCCEEEecHHHHHHHHHHhCcccccccccCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                       9999999999999999999999999999875322  122567899999999999999999999999999


Q ss_pred             HhccccccccCCCcccccccccC
Q psy4725         397 FCADLKKFQAKPGEEKVGKRESG  419 (457)
Q Consensus       397 f~~~l~~~~~~~~~~~~~~~~~~  419 (457)
                      |+++++++..+. +.+.|||+.+
T Consensus       334 w~~~~~~~~~~~-~~~~~~~~~~  355 (360)
T 2xhi_A          334 FSADLRQSRHAQ-EPPAKRRKGS  355 (360)
T ss_dssp             HHHHHCC----------------
T ss_pred             HHhhcccCCccc-Ccchhhhhcc
Confidence            999998877654 5555555444
>3i0w_A 8-oxoguanine-DNA-glycosylase; OGG, cacogg, DNA, 8-OXOG, 8OXOG, glycosylase, cytosine, hydrolase,lyase/DNA complex; HET: 8OG; 1.73A {Clostridium acetobutylicum} PDB: 3i0x_A* 3f10_A* 3f0z_A Back     alignment and structure
>2jhn_A ALKA, 3-methyladenine DNA-glycosylase; DNA repair, N1-methyladenine, N3-methylcytosine, hyperthermophiles, hydrolase; HET: MBO MES; 1.8A {Archaeoglobus fulgidus} PDB: 2jhj_A Back     alignment and structure
>4b21_A Probable DNA-3-methyladenine glycosylase 2; hydrolase-DNA complex, helix-hairpin-helix; HET: BGC 3DR; 1.45A {Schizosaccharomyces pombe} PDB: 4b22_A* 4b23_A* 4b24_A* Back     alignment and structure
>1mpg_A ALKA, 3-methyladenine DNA glycosylase II; DNA repair, base excision, methylation, ALK hydrolase; 1.80A {Escherichia coli} SCOP: a.96.1.3 d.129.1.2 PDB: 1diz_A 1pvs_A* 3cvs_A* 3cvt_A* 3cw7_A* 3cwa_A* 3cws_A* 3cwt_A* 3cwu_A* 3d4v_A* 3ogd_A* 3oh9_A* 3oh6_A* Back     alignment and structure
>3s6i_A DNA-3-methyladenine glycosylase 1; DNA glycosylase, DNA repair, helix-hairpin-helix (HHH), ABAS tetrahydrofuran (THF); HET: 3DR; 2.28A {Schizosaccharomyces pombe} Back     alignment and structure
>2yg9_A DNA-3-methyladenine glycosidase II, putative; hydrolase, DNA repair; 1.95A {Deinococcus radiodurans} PDB: 2yg8_A Back     alignment and structure
>2h56_A DNA-3-methyladenine glycosidase; 10174367, EC 3.2.2.-, struc genomics, PSI-2, protein structure initiative, joint center structural genomics; 2.55A {Bacillus halodurans} Back     alignment and structure
>3fhg_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase, hydrolase; 1.90A {Sulfolobus solfataricus} Back     alignment and structure
>1orn_A Endonuclease III; DNA repair, DNA glycosylase, [4Fe-4S] cluster, iron-sulfur cluster, hydrolase/DNA complex; HET: PED; 1.70A {Geobacillus stearothermophilus} SCOP: a.96.1.1 PDB: 1orp_A* 1p59_A* Back     alignment and structure
>2abk_A Endonuclease III; DNA-repair, DNA glycosylase; 1.85A {Escherichia coli} SCOP: a.96.1.1 Back     alignment and structure
>1pu6_A 3-methyladenine DNA glycosylase; helix-hairpin-helix, base excision repair, hydrolase; HET: KCX; 1.64A {Helicobacter pylori} SCOP: a.96.1.5 PDB: 1pu7_A* 1pu8_A* Back     alignment and structure
>1kg2_A A/G-specific adenine glycosylase; DNA repair, hydrolase; 1.20A {Escherichia coli} SCOP: a.96.1.2 PDB: 1kg3_A 1muy_A 1kg6_A 1kg5_A 1mun_A 1mud_A 1kg4_A 1weg_A 1wei_A* 1wef_A* 1kg7_A 1kqj_A Back     alignment and structure
>3n0u_A Probable N-glycosylase/DNA lyase; structural genomics, ISFI, DNA repair, 8-oxoguanine, base EX repair, PSI-2, protein structure initiative; 1.50A {Thermotoga maritima} Back     alignment and structure
>1kea_A Possible G-T mismatches repair enzyme; DNA repair, DNA glycosylase, DNA mismatch, methylation; 2.00A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.96.1.2 Back     alignment and structure
>3fhf_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase; 2.00A {Methanocaldococcus jannaschii} PDB: 3knt_A* Back     alignment and structure
>3fsp_A A/G-specific adenine glycosylase; protein-DNA complex, DNA glycosylase, transition state analog, DNA repair; HET: NRI; 2.20A {Geobacillus stearothermophilus} PDB: 3fsq_A* 1rrs_A* 1vrl_A* 1rrq_A* 3g0q_A* Back     alignment and structure
>3n5n_X A/G-specific adenine DNA glycosylase; alpha-helices, helix-hairpin-helix motif, iron-sulfur cluste hydrolase; 2.30A {Homo sapiens} Back     alignment and structure
>4e9f_A Methyl-CPG-binding domain protein 4; HHH DNA glycosylase family, hydrolase-DNA complex; HET: DNA 3DR; 1.79A {Homo sapiens} PDB: 4e9e_A* 4e9g_A* 4e9h_A* 4ea5_A* 4dk9_A* 1ngn_A 4ea4_A* 4ew4_A* 4evv_A* 4ew0_A* 3iho_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 457
d2noha2124 d.129.1.2 (A:12-135) 8-oxoguanine glycosylase {Hum 2e-24
d2noha2124 d.129.1.2 (A:12-135) 8-oxoguanine glycosylase {Hum 2e-09
d2noha1190 a.96.1.3 (A:136-325) 8-oxoguanine glycosylase {Hum 2e-19
d2noha1190 a.96.1.3 (A:136-325) 8-oxoguanine glycosylase {Hum 3e-16
>d2noha2 d.129.1.2 (A:12-135) 8-oxoguanine glycosylase {Human (Homo sapiens) [TaxId: 9606]} Length = 124 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: TATA-box binding protein-like
family: DNA repair glycosylase, N-terminal domain
domain: 8-oxoguanine glycosylase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 95.8 bits (238), Expect = 2e-24
 Identities = 40/117 (34%), Positives = 58/117 (49%), Gaps = 10/117 (8%)

Query: 13  KILCPAIELSLTLTLLGGQSFRWKQLTSDEKKLGNRFQGVFKECVWTLWADPSYLHYQVF 72
            I CP  EL L L L  GQSFRW++ +         + GV  + VWTL      LH  V+
Sbjct: 14  SIPCPRSELRLDLVLPSGQSFRWREQSP------AHWSGVLADQVWTLTQTEEQLHCTVY 67

Query: 73  SQHKLNANS----VETMLKEYFRLDENLPELYAEWSNRDAFFRQTCGDFVGIRMLNQ 125
              K  A+         +++YF+LD  L +LY  W + D+ F++    F G+R+L Q
Sbjct: 68  RGDKSQASRPTPDELEAVRKYFQLDVTLAQLYHHWGSVDSHFQEVAQKFQGVRLLRQ 124
>d2noha2 d.129.1.2 (A:12-135) 8-oxoguanine glycosylase {Human (Homo sapiens) [TaxId: 9606]} Length = 124 Back     information, alignment and structure
>d2noha1 a.96.1.3 (A:136-325) 8-oxoguanine glycosylase {Human (Homo sapiens) [TaxId: 9606]} Length = 190 Back     information, alignment and structure
>d2noha1 a.96.1.3 (A:136-325) 8-oxoguanine glycosylase {Human (Homo sapiens) [TaxId: 9606]} Length = 190 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query457
d2noha1190 8-oxoguanine glycosylase {Human (Homo sapiens) [Ta 100.0
d1mpga1183 3-Methyladenine DNA glycosylase II (gene alkA or a 100.0
d2noha2124 8-oxoguanine glycosylase {Human (Homo sapiens) [Ta 99.94
d1pu6a_217 3-Methyladenine DNA glycosylase III (MagIII) {Heli 99.9
d1orna_214 Endonuclease III {Escherichia coli [TaxId: 562]} 99.79
d1keaa_217 Thymine-DNA glycosylase {Archaeon Methanobacterium 99.79
d2abka_211 Endonuclease III {Escherichia coli [TaxId: 562]} 99.78
d1kg2a_224 Catalytic domain of MutY {Escherichia coli [TaxId: 99.77
d1rrqa1221 Catalytic domain of MutY {Bacillus stearothermophi 99.76
d1ngna_144 Mismatch-specific thymine glycosylase domain of th 99.68
d1mpga299 3-Methyladenine DNA glycosylase II (gene alkA or a 94.31
d1cuka278 DNA helicase RuvA subunit, middle domain {Escheric 90.02
d1ixra173 DNA helicase RuvA subunit, middle domain {Thermus 86.88
d1cuka278 DNA helicase RuvA subunit, middle domain {Escheric 85.16
d1bvsa271 DNA helicase RuvA subunit, middle domain {Mycobact 82.38
>d2noha1 a.96.1.3 (A:136-325) 8-oxoguanine glycosylase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: DNA-glycosylase
superfamily: DNA-glycosylase
family: DNA repair glycosylase, 2 C-terminal domains
domain: 8-oxoguanine glycosylase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-45  Score=340.66  Aligned_cols=187  Identities=49%  Similarity=0.932  Sum_probs=170.8

Q ss_pred             CHHHHHHHHHHhccccHHHHHHHHHHHHHHhCCcccccCCCCCCcCcccCCCCCCCCCCcccccccCCcHHHHcCCChHH
Q psy4725         126 DLTENIFSFLCSSNNNIARISGMIDKMCKEYGTLICTLDSDGNLVGDCEKGRSHAKSCPAVTKFFAFPSIDALARPAVEA  205 (457)
Q Consensus       126 DPfE~LIsfIcSQNnnI~rI~~mi~rL~~~yGe~l~~~~g~~~~~~~~~~~r~~~~~~p~~~~~ysFPTpe~LA~~~~Ee  205 (457)
                      |||||||++|||||+|+++|++++++|+++||+++...++                     ..+|.||||++|+.++.++
T Consensus         1 DPfe~lv~~IisQq~s~~~~~~~~~~L~~~~G~~~~~~~~---------------------~~~~~FP~~~~la~~~~e~   59 (190)
T d2noha1           1 DPIECLFSFICSSNNNIARITGMVERLCQAFGPRLIQLDD---------------------VTYHGFPSLQALAGPEVEA   59 (190)
T ss_dssp             CHHHHHHHHHTTTTSCHHHHHHHHHHHHHHHSCEEEEETT---------------------EEEECCCCHHHHHSTTHHH
T ss_pred             ChHHHHHHHHHHcccCHHHHHHHHHHHHHHHCCCccccCc---------------------chhhccCCHHHHHHcchHH
Confidence            8999999999999999999999999999999999866655                     6789999999999987777


Q ss_pred             HHHhcCCchhHHHHHHHHHHHHHcC-CCCcchhhcCCCHHHHHHHhhcCCCccccCCCcccccccccccCCCccchhhhh
Q psy4725         206 KLRQLGFGYRAKFIQKSAEYIIQGG-GESWLERLGGKSYEEAREELQRLPGIGAKVGDGVFKEHVWTLWADPSYLHYQVY  284 (457)
Q Consensus       206 ~LR~~g~gYRAkyI~~~A~~~~e~~-G~~~l~~l~~~~~~eare~L~~LpGVGpK~a~~vl~~~~~~~~~~~~~~~~~~~  284 (457)
                      .++.+|+||||+||+++|+++.++. |..+++.|..++++++++.|++|||||||                         
T Consensus        60 ~l~~~~~~~ra~~i~~~a~~i~~~~~~~~~l~~l~~~~~~~~~~~L~~l~GIG~w-------------------------  114 (190)
T d2noha1          60 HLRKLGLGYRARYVSASARAILEEQGGLAWLQQLRESSYEEAHKALCILPGVGTQ-------------------------  114 (190)
T ss_dssp             HHHHTTCTTHHHHHHHHHHHHHHTSCSHHHHHHTTTSCHHHHHHHHTTSTTCCHH-------------------------
T ss_pred             HHHhcchHHHHHHHHHHHHHHHHhcccccCHHHhcCCCcHHHHHHHHHcCCchHH-------------------------
Confidence            7899999999999999999999842 34578889999999999999999999999                         


Q ss_pred             hccccccchHHHHHHHHhhhhcCchhhHhhhhchhhhhhccCChHHHHHHHHHhcCCCCccccchhHHHHHHhhcccC--
Q psy4725         285 SQHKLNTNSVETMLKEYFRLDENLPELYAEWSNRDAFFRQTCGDFVADCICLMSLSHLQAVPVDTHVYQIACNHYHFQ--  362 (457)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vAdci~l~~l~~~~~~PvD~~v~~~a~~~y~~~--  362 (457)
                                                                   ||+||++|+++++++||||+||+|+++++|...  
T Consensus       115 ---------------------------------------------TA~~il~~~~~~~d~fpvD~~v~R~~~r~~~~~~~  149 (190)
T d2noha1         115 ---------------------------------------------VADCICLMALDKPQAVPVDVHMWHIAQRDYSWHPT  149 (190)
T ss_dssp             ---------------------------------------------HHHHHHHHHSCCTTCCCCCHHHHHHHHHHHCCCCS
T ss_pred             ---------------------------------------------HHHHHHHHHcCCCCeEeecHHHHHHHHHHhcccCc
Confidence                                                         999999999999999999999999999998633  


Q ss_pred             CCCCCCCCHHHHHHHHHHHHhhhcCcHHHHHHHHHhccccc
Q psy4725         363 KSTSKTLTPAVYNQIRAFFADKFGKYAGWAHSILFCADLKK  403 (457)
Q Consensus       363 ~~~~~~lt~~~y~~i~~~~~~~fg~~ag~A~~~lf~~~l~~  403 (457)
                      ....+++++..|.++.++++++||+|+||||+|||..+|++
T Consensus       150 ~~~~k~~~~~~~~~~~~~~~~~~g~y~g~a~~~Lf~~~~~~  190 (190)
T d2noha1         150 TSQAKGPSPQTNKELGNFFRSLWGPYAGWAAAVLFSADLRQ  190 (190)
T ss_dssp             SSSCSSSCHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHTC
T ss_pred             chhhccccHHHHHHHHHHHHHHhcchhhHHHHHHhHHHhcC
Confidence            33457789999999999999999999999999999998875
>d1mpga1 a.96.1.3 (A:100-282) 3-Methyladenine DNA glycosylase II (gene alkA or aidA) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2noha2 d.129.1.2 (A:12-135) 8-oxoguanine glycosylase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1pu6a_ a.96.1.5 (A:) 3-Methyladenine DNA glycosylase III (MagIII) {Helicobacter pylori [TaxId: 210]} Back     information, alignment and structure
>d1orna_ a.96.1.1 (A:) Endonuclease III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1keaa_ a.96.1.2 (A:) Thymine-DNA glycosylase {Archaeon Methanobacterium thermoformicicum [TaxId: 145262]} Back     information, alignment and structure
>d2abka_ a.96.1.1 (A:) Endonuclease III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1kg2a_ a.96.1.2 (A:) Catalytic domain of MutY {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1rrqa1 a.96.1.2 (A:9-229) Catalytic domain of MutY {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1ngna_ a.96.1.2 (A:) Mismatch-specific thymine glycosylase domain of the methyl-GpG binding protein mbd4 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1mpga2 d.129.1.2 (A:1-99) 3-Methyladenine DNA glycosylase II (gene alkA or aidA) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1cuka2 a.60.2.1 (A:65-142) DNA helicase RuvA subunit, middle domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ixra1 a.60.2.1 (A:63-135) DNA helicase RuvA subunit, middle domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1cuka2 a.60.2.1 (A:65-142) DNA helicase RuvA subunit, middle domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1bvsa2 a.60.2.1 (A:64-134) DNA helicase RuvA subunit, middle domain {Mycobacterium leprae [TaxId: 1769]} Back     information, alignment and structure