Psyllid ID: psy4740

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------
Protein Sequence
MHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPASHPYISQREKEYK
Secondary Structure (PSIPRED)
cccHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHcccHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHEEcHHHHHHHHHHHHHHHccccccccccHHHHccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHcccccccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHEHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHcc
Coil and Loop (DISEMBL)
mhipggllaqkfggkhtlgfGILSTAIFTLLTPFAARQSANWLIALRFFeglgegttfpaLNTLlaqwvpptergkigsfvfagnqiGTVFSSFLSGFLlkytdgdwpeIFYLFGILGVLWFVAWCFLcyndpashpyisqrekeyk
Flexible Loop (DISEMBL)
mhipggllAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPashpyisqrekeyk
Low Complexity Region (SEG)
MHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPASHPYISQREKEYK
Disordered region (IsUnstruct)
******LLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDP**************
Disordered Region (DISOPRED)
MHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPASHPYISQR*KEY*
Disordered Region (DISEMBL)
MHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPASHPYI********
Disordered Region (DISPRO)
MHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPASHPYISQRE***K
Transmembrane Helix (TMHMM)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPASHPYISQREKEYK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	147	2.2.26 [Sep-21-2011]
O61369	483	Putative inorganic phosph	N/A	N/A	0.986	0.300	0.482	6e-37
Q9V7S5	529	Putative inorganic phosph	no	N/A	0.986	0.274	0.482	3e-36
Q9NRA2	495	Sialin OS=Homo sapiens GN	yes	N/A	0.972	0.288	0.503	6e-34
Q9MZD1	495	Sialin OS=Ovis aries GN=S	N/A	N/A	0.972	0.288	0.496	7e-34
Q03567	493	Uncharacterized transport	yes	N/A	0.986	0.294	0.452	6e-29
Q8BN82	495	Sialin OS=Mus musculus GN	yes	N/A	0.972	0.288	0.482	8e-29
Q05B21	576	Vesicular glutamate trans	no	N/A	0.972	0.248	0.379	1e-28
Q6INC8	576	Vesicular glutamate trans	N/A	N/A	0.972	0.248	0.372	4e-28
Q1L8X9	590	Vesicular glutamate trans	no	N/A	0.972	0.242	0.358	9e-28
Q62634	560	Vesicular glutamate trans	no	N/A	0.972	0.255	0.372	1e-27

>sp|O61369|PICO_DROAN Putative inorganic phosphate cotransporter OS=Drosophila ananassae GN=Picot PE=3 SV=1

 Score =  152 bits (385), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 71/147 (48%), Positives = 100/147 (68%), Gaps = 2/147 (1%)

Query: 2   HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANW-LIALRFFEGLGEGTTFPA 60
            IP G+LA+K+G    LG+G+L  ++F  L P AAR+   W L A+RF +GLGEG   P 
Sbjct: 77  QIPFGILAKKYGSLRFLGYGMLINSVFAFLVPVAAREGGVWGLCAVRFIQGLGEGPIVPC 136

Query: 61  LNTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLKYT-DGDWPEIFYLFGILGV 119
            + +LA+W+PP ER ++G+ V+AG Q GT+ S  LSG L +Y  DG WP IFY+FGI+G 
Sbjct: 137 THAMLAKWIPPNERSRMGAAVYAGAQFGTIISMPLSGLLAEYGFDGGWPSIFYVFGIVGT 196

Query: 120 LWFVAWCFLCYNDPASHPYISQREKEY 146
           +W +A+    Y DP++HP I +REK+Y
Sbjct: 197 VWSIAFLIFVYEDPSTHPKIDEREKKY 223

May be an inorganic phosphate cotransporter.
Drosophila ananassae (taxid: 7217)

>sp|Q9V7S5|PICO_DROME Putative inorganic phosphate cotransporter OS=Drosophila melanogaster GN=Picot PE=1 SV=1

 Score =  150 bits (378), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 71/147 (48%), Positives = 99/147 (67%), Gaps = 2/147 (1%)

Query: 2   HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANW-LIALRFFEGLGEGTTFPA 60
            IP G+LA+K+G    LG+G+L  ++F  L P AAR    W L A+RF +GLGEG   P 
Sbjct: 123 QIPFGILAKKYGSLRFLGYGMLINSVFAFLVPVAARGGGVWGLCAVRFIQGLGEGPIVPC 182

Query: 61  LNTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLKYT-DGDWPEIFYLFGILGV 119
            + +LA+W+PP ER ++G+ V+AG Q GT+ S  LSG L +Y  DG WP IFY+FGI+G 
Sbjct: 183 THAMLAKWIPPNERSRMGAAVYAGAQFGTIISMPLSGLLAEYGFDGGWPSIFYVFGIVGT 242

Query: 120 LWFVAWCFLCYNDPASHPYISQREKEY 146
           +W +A+    + DP+SHP I +REK+Y
Sbjct: 243 VWSIAFLIFVHEDPSSHPTIDEREKKY 269

May be an inorganic phosphate cotransporter.

Drosophila melanogaster (taxid: 7227)

>sp|Q9NRA2|S17A5_HUMAN Sialin OS=Homo sapiens GN=SLC17A5 PE=1 SV=2

 Score =  142 bits (359), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 73/145 (50%), Positives = 90/145 (62%), Gaps = 2/145 (1%)

Query: 2   HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPAL 61
            IPGG +A K GGK  LGFGIL TA+ TL TP AA      LI LR  EGLGEG TFPA+
Sbjct: 123 QIPGGYVASKIGGKMLLGFGILGTAVLTLFTPIAADLGVGPLIVLRALEGLGEGVTFPAM 182

Query: 62  NTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLW 121
           + + + W PP ER K+ S  +AG Q+GTV S  LSG +  Y   +W  +FY FG +G+ W
Sbjct: 183 HAMWSSWAPPLERSKLLSISYAGAQLGTVISLPLSGIICYYM--NWTYVFYFFGTIGIFW 240

Query: 122 FVAWCFLCYNDPASHPYISQREKEY 146
           F+ W +L  + P  H  IS  EKEY
Sbjct: 241 FLLWIWLVSDTPQKHKRISHYEKEY 265

Primary solute translocator for anionic substances; particularly it is a free sialic acid transporter in the lysosomes.

Homo sapiens (taxid: 9606)

>sp|Q9MZD1|S17A5_SHEEP Sialin OS=Ovis aries GN=SLC17A5 PE=2 SV=1

 Score =  142 bits (358), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 72/145 (49%), Positives = 94/145 (64%), Gaps = 2/145 (1%)

Query: 2   HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPAL 61
            IPGG +A + GGK  LGFGI +TAIFTL TP AA      L+ALR  EGLGEG T+PA+
Sbjct: 123 QIPGGYVASRSGGKLLLGFGIFATAIFTLFTPLAADFGVGALVALRALEGLGEGVTYPAM 182

Query: 62  NTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLW 121
           + + + W PP ER K+ S  +AG Q+GTV S  LSG +  Y   +W  +FY FGI+G++W
Sbjct: 183 HAMWSSWAPPLERSKLLSISYAGAQLGTVVSLPLSGVICYYM--NWTYVFYFFGIVGIIW 240

Query: 122 FVAWCFLCYNDPASHPYISQREKEY 146
           F+ W  L  + P +H  I+  EKEY
Sbjct: 241 FILWICLVSDTPETHKTITPYEKEY 265

Primary solute translocator for anionic substances; particularly it is a free sialic acid transporter in the lysosomes (Probable). Receptor for CM101, a polysaccharide produced by group B Streptococcus with antipathoangiogenic properties.

Ovis aries (taxid: 9940)

>sp|Q03567|YLD2_CAEEL Uncharacterized transporter C38C10.2 OS=Caenorhabditis elegans GN=C38C10.2 PE=1 SV=2

 Score =  125 bits (315), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 66/146 (45%), Positives = 87/146 (59%), Gaps = 1/146 (0%)

Query: 2   HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPAL 61
            I GG LA ++GGK  +   IL +A+ TLL P AAR S   L  LR   G  +G TFPA+
Sbjct: 98  QIIGGHLASRYGGKRVVFVTILGSALLTLLNPVAARTSEYALAILRAAIGFLQGATFPAM 157

Query: 62  NTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLKYT-DGDWPEIFYLFGILGVL 120
           +T+ + W PP E   +    +AG QIG V    LSGFL +Y  DG WP IFY+ G+ GVL
Sbjct: 158 HTMWSVWGPPLELSVLTGVTYAGAQIGNVIVLPLSGFLCEYGFDGGWPSIFYIIGVFGVL 217

Query: 121 WFVAWCFLCYNDPASHPYISQREKEY 146
           W   W ++  + PA+HP I+  EK+Y
Sbjct: 218 WTAVWWYVSSDKPATHPRITPEEKQY 243

Caenorhabditis elegans (taxid: 6239)

>sp|Q8BN82|S17A5_MOUSE Sialin OS=Mus musculus GN=Slc17a5 PE=2 SV=2

 Score =  125 bits (314), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 70/145 (48%), Positives = 94/145 (64%), Gaps = 2/145 (1%)

Query: 2   HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPAL 61
            IPGG +A + GGK  LG GIL T++FTL TP AA      L+ LR  EGLGEG TFPA+
Sbjct: 123 QIPGGYIASRVGGKLLLGLGILGTSVFTLFTPLAADLGVVTLVVLRALEGLGEGVTFPAM 182

Query: 62  NTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLW 121
           + + + W PP ER K+ +  +AG Q+GTV S  LSG +  Y   +W  +FYLFGI+G++W
Sbjct: 183 HAMWSSWAPPLERSKLLTISYAGAQLGTVISLPLSGIICYYM--NWTYVFYLFGIVGIVW 240

Query: 122 FVAWCFLCYNDPASHPYISQREKEY 146
           F+ W ++  + P +H  IS  EKEY
Sbjct: 241 FILWMWIVSDTPETHKTISHYEKEY 265

Primary solute translocator for anionic substances; particularly it is a free sialic acid transporter in the lysosomes.

Mus musculus (taxid: 10090)

>sp|Q05B21|VGLU1_XENTR Vesicular glutamate transporter 1 OS=Xenopus tropicalis GN=slc17a7 PE=2 SV=1

 Score =  124 bits (312), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 55/145 (37%), Positives = 87/145 (60%), Gaps = 2/145 (1%)

Query: 2   HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPAL 61
            IPGG + QKF      GF I++T+   +L P AAR     +I +R  +GL EG T+PA 
Sbjct: 131 QIPGGYICQKFAANRVFGFAIVATSTLNMLIPSAARVHFACVICVRILQGLVEGVTYPAC 190

Query: 62  NTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLW 121
           + + ++W PP ER ++ +  F G+  G V +  L+G L++Y+   W  +FY++G  G++W
Sbjct: 191 HGIWSKWAPPLERSRLATTAFCGSYAGAVVAMPLAGVLVQYS--GWSSVFYVYGSFGIMW 248

Query: 122 FVAWCFLCYNDPASHPYISQREKEY 146
           ++ W  + Y  PA HP IS+ EK+Y
Sbjct: 249 YMFWILVSYESPAIHPTISEEEKKY 273

Mediates the uptake of glutamate into synaptic vesicles at presynaptic nerve terminals of excitatory neural cells.

Xenopus tropicalis (taxid: 8364)

>sp|Q6INC8|VGLU1_XENLA Vesicular glutamate transporter 1 OS=Xenopus laevis GN=slc17a7 PE=2 SV=1

 Score =  123 bits (308), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 54/145 (37%), Positives = 86/145 (59%), Gaps = 2/145 (1%)

Query: 2   HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPAL 61
            IPGG + QKF      GF I++T+   +L P AAR     +I +R  +GL EG T+PA 
Sbjct: 131 QIPGGYICQKFAANRVFGFAIVATSTLNMLIPSAARVHFACVICVRILQGLVEGVTYPAC 190

Query: 62  NTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLW 121
           + + ++W PP ER ++ +  F G+  G V +  L+G L++Y+   W  +FY++G  G+ W
Sbjct: 191 HGIWSKWAPPLERSRLATTAFCGSYAGAVVAMPLAGVLVQYS--GWSSVFYVYGSFGITW 248

Query: 122 FVAWCFLCYNDPASHPYISQREKEY 146
           ++ W  + Y  PA HP IS+ E++Y
Sbjct: 249 YMFWILVSYESPAQHPTISEEERKY 273

Mediates the uptake of glutamate into synaptic vesicles at presynaptic nerve terminals of excitatory neural cells.

Xenopus laevis (taxid: 8355)

>sp|Q1L8X9|VGLU3_DANRE Vesicular glutamate transporter 3 OS=Danio rerio GN=slc17a8 PE=3 SV=2

 Score =  122 bits (305), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 52/145 (35%), Positives = 84/145 (57%), Gaps = 2/145 (1%)

Query: 2   HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPAL 61
            IPGG ++ K       G  I  T++  +  P AAR     ++ +R  +GL EG T+PA 
Sbjct: 144 QIPGGFISNKLAANRVFGAAIFLTSVLNMFIPSAARVHYGCVMFVRILQGLVEGVTYPAC 203

Query: 62  NTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLW 121
           + + ++W PP ER ++ +  F G+  G V +  L+G L++Y    WP +FY++G+ G++W
Sbjct: 204 HGMWSKWAPPLERSRLATTSFCGSYAGAVIAMPLAGILVQYV--GWPSVFYIYGVFGIIW 261

Query: 122 FVAWCFLCYNDPASHPYISQREKEY 146
           ++ W  L YN PA HP IS+ E+ Y
Sbjct: 262 YIFWILLAYNSPAVHPTISEEERNY 286

Mediates the uptake of glutamate into synaptic vesicles at presynaptic nerve terminals of excitatory neural cells.

Danio rerio (taxid: 7955)

>sp|Q62634|VGLU1_RAT Vesicular glutamate transporter 1 OS=Rattus norvegicus GN=Slc17a7 PE=1 SV=1

 Score =  122 bits (305), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 54/145 (37%), Positives = 86/145 (59%), Gaps = 2/145 (1%)

Query: 2   HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPAL 61
            IPGG + QKF      GF I++T+   +L P AAR     +I +R  +GL EG T+PA 
Sbjct: 131 QIPGGFICQKFAANRVFGFAIVATSTLNMLIPSAARVHYGCVIFVRILQGLVEGVTYPAC 190

Query: 62  NTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLW 121
           + + ++W PP ER ++ +  F G+  G V +  L+G L++Y+   W  +FY++G  G+ W
Sbjct: 191 HGIWSKWAPPLERSRLATTAFCGSYAGAVVAMPLAGVLVQYS--GWSSVFYVYGSFGIFW 248

Query: 122 FVAWCFLCYNDPASHPYISQREKEY 146
           ++ W  + Y  PA HP IS+ E++Y
Sbjct: 249 YLFWLLVSYESPALHPSISEEERKY 273

Mediates the uptake of glutamate into synaptic vesicles at presynaptic nerve terminals of excitatory neural cells. May also mediate the transport of inorganic phosphate.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	147
328713763	514	PREDICTED: sialin-like [Acyrthosiphon pi	0.986	0.282	0.648	1e-52
328709879	514	PREDICTED: sialin-like [Acyrthosiphon pi	0.986	0.282	0.627	1e-50
193690601	520	PREDICTED: sialin-like [Acyrthosiphon pi	0.986	0.278	0.613	4e-50
345482563	503	PREDICTED: putative inorganic phosphate	0.986	0.288	0.630	2e-48
357625667	469	hypothetical protein KGM_20517 [Danaus p	0.979	0.307	0.609	3e-47
195160000	508	GL16129 [Drosophila persimilis] gi|19847	0.965	0.279	0.639	6e-45
91089231	486	PREDICTED: similar to sodium-dependent p	0.979	0.296	0.624	7e-45
332374810	502	unknown [Dendroctonus ponderosae]	0.979	0.286	0.594	2e-44
380022078	478	PREDICTED: putative inorganic phosphate	0.972	0.299	0.576	2e-44
322794510	486	hypothetical protein SINV_12524 [Solenop	0.972	0.294	0.595	2e-44

>gi|328713763|ref|XP_001947560.2| PREDICTED: sialin-like [Acyrthosiphon pisum]

 Score =  211 bits (536), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 94/145 (64%), Positives = 115/145 (79%)

Query: 2   HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPAL 61
           H+PGG+L+Q+FGGKHT+G GILSTAIFTL+TP+ A      L  LRF EGLGEGTTFPAL
Sbjct: 108 HLPGGVLSQRFGGKHTMGIGILSTAIFTLMTPYVANMGPRPLTILRFVEGLGEGTTFPAL 167

Query: 62  NTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLW 121
            TLLAQW PP E+G++ + VFAG QIG +FS+FLSGF+++YT G WP +FY FGI  ++W
Sbjct: 168 YTLLAQWAPPEEKGRLSTVVFAGTQIGNIFSNFLSGFIIQYTPGGWPNVFYFFGITSLIW 227

Query: 122 FVAWCFLCYNDPASHPYISQREKEY 146
           FV WC L YNDP SHP+IS  E+EY
Sbjct: 228 FVLWCVLVYNDPKSHPFISDTEREY 252

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328709879|ref|XP_001947589.2| PREDICTED: sialin-like [Acyrthosiphon pisum]

 Score =  204 bits (519), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 91/145 (62%), Positives = 114/145 (78%)

Query: 2   HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPAL 61
           H+PGG+L+Q+FGGK+T+G GILSTAIFTL+TP+ A   +  L  LRF EGLGEGTTFPAL
Sbjct: 108 HLPGGVLSQRFGGKYTMGLGILSTAIFTLMTPYVAYMGSRPLTILRFVEGLGEGTTFPAL 167

Query: 62  NTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLW 121
            TLLAQW PP E+GK+ + VFAG QIG +FS+FLSGF+++Y  G WP +FY FGI  ++W
Sbjct: 168 CTLLAQWAPPEEKGKLSTLVFAGVQIGNIFSNFLSGFIIQYIPGGWPNVFYFFGITSLIW 227

Query: 122 FVAWCFLCYNDPASHPYISQREKEY 146
           FV WC   YNDP SHP+IS  E++Y
Sbjct: 228 FVLWCIFVYNDPNSHPFISDMERDY 252

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193690601|ref|XP_001949739.1| PREDICTED: sialin-like [Acyrthosiphon pisum]

 Score =  202 bits (514), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 89/145 (61%), Positives = 110/145 (75%)

Query: 2   HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPAL 61
           H+PGG+L+QK+GGKHT+G GIL TAIFTL+TPF A   +  L  LRF EGLGEG TFPAL
Sbjct: 119 HVPGGVLSQKYGGKHTMGIGILCTAIFTLMTPFVAHIGSRPLAILRFVEGLGEGMTFPAL 178

Query: 62  NTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLW 121
            TLLAQW PP E+GK  + VFAG QIG + S+FLSGF+++Y  G WP +FY FGI+ ++W
Sbjct: 179 CTLLAQWAPPEEKGKFATLVFAGAQIGNILSNFLSGFIMRYIPGGWPNVFYFFGIVSIIW 238

Query: 122 FVAWCFLCYNDPASHPYISQREKEY 146
           F+ WC   YNDP SHP+IS  E+ Y
Sbjct: 239 FLIWCMFVYNDPNSHPFISDEERAY 263

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345482563|ref|XP_001607837.2| PREDICTED: putative inorganic phosphate cotransporter-like [Nasonia vitripennis]

 Score =  196 bits (499), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 92/146 (63%), Positives = 113/146 (77%), Gaps = 1/146 (0%)

Query: 2   HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAAR-QSANWLIALRFFEGLGEGTTFPA 60
           H+PGG+LA++FGGK++LG GILSTAIFTLLTP A +   A  LI LR   GLGEGTTFPA
Sbjct: 106 HLPGGMLAERFGGKYSLGLGILSTAIFTLLTPVAVKWGDATALIVLRVLMGLGEGTTFPA 165

Query: 61  LNTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVL 120
           LN +LAQW PP ER KIGS VFAG Q+GTVF++ LSGF+L ++   WP +FY+FG +GVL
Sbjct: 166 LNAMLAQWTPPEERSKIGSLVFAGAQLGTVFATTLSGFILHHSTMGWPAVFYVFGSVGVL 225

Query: 121 WFVAWCFLCYNDPASHPYISQREKEY 146
           WF+ W  LCYN+P  HP+IS  E +Y
Sbjct: 226 WFIVWVVLCYNNPREHPFISDAEAKY 251

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357625667|gb|EHJ76037.1| hypothetical protein KGM_20517 [Danaus plexippus]

 Score =  193 bits (490), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 89/146 (60%), Positives = 115/146 (78%), Gaps = 2/146 (1%)

Query: 2   HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAAR-QSANWLIALRFFEGLGEGTTFPA 60
           H+PGG+LA++FGGK++LGFG+LSTA+FTLLTP+A     A  LI LR  EGLGEGTTFPA
Sbjct: 80  HLPGGMLAERFGGKYSLGFGVLSTAVFTLLTPWAVNLGGATGLIILRVLEGLGEGTTFPA 139

Query: 61  LNTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVL 120
           LN +LA+W P +ERG++GS VF G QIG +  ++ SG ++K T G+W  +FYLFG +G+L
Sbjct: 140 LNAMLARWSPVSERGRMGSLVFGGAQIGNIAGTYFSGLVIKET-GEWQSVFYLFGSIGIL 198

Query: 121 WFVAWCFLCYNDPASHPYISQREKEY 146
           WF+ W  LCYNDP SHPYIS +EK+Y
Sbjct: 199 WFILWALLCYNDPESHPYISDKEKKY 224

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195160000|ref|XP_002020864.1| GL16129 [Drosophila persimilis] gi|198475788|ref|XP_001357160.2| GA18795 [Drosophila pseudoobscura pseudoobscura] gi|194117814|gb|EDW39857.1| GL16129 [Drosophila persimilis] gi|198137960|gb|EAL34227.2| GA18795 [Drosophila pseudoobscura pseudoobscura]

 Score =  185 bits (469), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 94/147 (63%), Positives = 110/147 (74%), Gaps = 5/147 (3%)

Query: 2   HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQS-ANWLIALRFFEGLGEGTTFPA 60
           HIPGGLLA+KFGGK TLG GILSTA FT+LTP A +Q  ++WLI  R   GLGEGTTFPA
Sbjct: 101 HIPGGLLAEKFGGKWTLGLGILSTAAFTMLTPLAIQQGGSDWLIVSRVLMGLGEGTTFPA 160

Query: 61  LNTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSG-FLLKYTDGDWPEIFYLFGILGV 119
           L+ LLA WVP  ERGK+G+ V  G Q+GT+  + LSG FL  Y   DWP +FY FG LGV
Sbjct: 161 LSVLLAAWVPANERGKLGALVLGGGQVGTIMGNMLSGVFLDSY---DWPFVFYFFGGLGV 217

Query: 120 LWFVAWCFLCYNDPASHPYISQREKEY 146
           +WFV + FLCY+DPASHP+I   EKEY
Sbjct: 218 VWFVIFVFLCYSDPASHPFIKPSEKEY 244

Source: Drosophila persimilis

Species: Drosophila persimilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91089231|ref|XP_968382.1| PREDICTED: similar to sodium-dependent phosphate transporter [Tribolium castaneum] gi|270012477|gb|EFA08925.1| hypothetical protein TcasGA2_TC006632 [Tribolium castaneum]

 Score =  184 bits (468), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 93/149 (62%), Positives = 114/149 (76%), Gaps = 5/149 (3%)

Query: 2   HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSA-NW--LIALRFFEGLGEGTTF 58
           H+PGG+LA+KFGG++TLG GILSTA FTL+TP     S  NW  L+ LR  EGLGEGTT+
Sbjct: 103 HLPGGILAEKFGGRYTLGLGILSTAFFTLITPLVIHASGGNWVALVVLRLVEGLGEGTTY 162

Query: 59  PALNTLLAQW-VPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGIL 117
           PALNTLLA+W VP  ER K+GS V+AG QIGT+ S+F+SG L+K T+ DW  +FYLFG L
Sbjct: 163 PALNTLLAKWWVPLHERAKMGSLVYAGGQIGTIISNFISGSLIKATE-DWSSVFYLFGGL 221

Query: 118 GVLWFVAWCFLCYNDPASHPYISQREKEY 146
           GVLW V W  LCY+DP SHP+I + E +Y
Sbjct: 222 GVLWVVLWFLLCYSDPQSHPFIKESELKY 250

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332374810|gb|AEE62546.1| unknown [Dendroctonus ponderosae]

 Score =  183 bits (464), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 88/148 (59%), Positives = 113/148 (76%), Gaps = 4/148 (2%)

Query: 2   HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSA---NWLIALRFFEGLGEGTTF 58
           H+PGG+LA KFGGK+TLG GILST IFT+LTP+    +     W++ALR  EGLGEGTT+
Sbjct: 104 HLPGGILAAKFGGKYTLGLGILSTGIFTILTPWIVIMTHGNWKWIVALRVVEGLGEGTTY 163

Query: 59  PALNTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILG 118
           PALNT+LAQWVP  ER KIGS V+AG QIGT+  + +SG L+  T+ DW  +FYLFG LG
Sbjct: 164 PALNTMLAQWVPVGERSKIGSLVYAGGQIGTIVCNLISGQLITATE-DWASVFYLFGGLG 222

Query: 119 VLWFVAWCFLCYNDPASHPYISQREKEY 146
           ++WF+ +  LCY++P  HP+IS REK+Y
Sbjct: 223 IVWFIFFQLLCYSEPKHHPFISDREKQY 250

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380022078|ref|XP_003694882.1| PREDICTED: putative inorganic phosphate cotransporter-like [Apis florea]

 Score =  183 bits (464), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 83/144 (57%), Positives = 110/144 (76%), Gaps = 1/144 (0%)

Query: 2   HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAAR-QSANWLIALRFFEGLGEGTTFPA 60
           H+PGG+L++KFGGK++LG GIL+T IFTL+TP       A  LI +R   GL EGTTFPA
Sbjct: 82  HLPGGMLSEKFGGKYSLGLGILATGIFTLITPITVEIGEATGLIIVRLLMGLCEGTTFPA 141

Query: 61  LNTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVL 120
           LN +LAQW PP ER  IGS VFAG Q+GTVF++ LSG +L+Y+   WP +FY+FG +G+L
Sbjct: 142 LNAMLAQWTPPEERSMIGSLVFAGAQLGTVFANSLSGVILRYSIIGWPAVFYVFGSIGIL 201

Query: 121 WFVAWCFLCYNDPASHPYISQREK 144
           WF+ W  +CYN+P +HP+IS+RE+
Sbjct: 202 WFLLWLVICYNNPDTHPFISERER 225

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322794510|gb|EFZ17563.1| hypothetical protein SINV_12524 [Solenopsis invicta]

 Score =  183 bits (464), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 87/146 (59%), Positives = 109/146 (74%), Gaps = 3/146 (2%)

Query: 2   HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAAR-QSANWLIALRFFEGLGEGTTFPA 60
           H+PGG+LA+KFGGK+TL  GILSTA+FTLLTP       A  LI LR   GLGEGTTFPA
Sbjct: 103 HLPGGILAEKFGGKYTLSLGILSTAVFTLLTPLVVDWGQATGLIVLRILMGLGEGTTFPA 162

Query: 61  LNTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVL 120
           LN +LAQW PP ER  IGS VFAG Q+GTVF++ +SG +L     DWP +FY+FG +GV+
Sbjct: 163 LNAMLAQWTPPEERSVIGSLVFAGAQLGTVFANAISGLILH--SYDWPAVFYVFGSIGVV 220

Query: 121 WFVAWCFLCYNDPASHPYISQREKEY 146
           WF+ +  +CYN+P  HP+IS REK++
Sbjct: 221 WFIVFVLICYNNPDEHPFISDREKKF 246

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	147
FB|FBgn0010497	496	dmGlut "Dietary and metabolic	0.965	0.286	0.598	8.1e-44
FB|FBgn0030452	559	MFS10 "Major Facilitator Super	0.979	0.257	0.496	1.1e-39
FB|FBgn0028513	481	CG9254 [Drosophila melanogaste	0.972	0.297	0.506	1.5e-37
UNIPROTKB|E2R8R4	495	SLC17A5 "Uncharacterized prote	0.965	0.286	0.534	3e-37
UNIPROTKB|O61369	483	Picot "Putative inorganic phos	0.979	0.298	0.486	6.3e-37
FB|FBgn0024315	529	Picot "Picot" [Drosophila mela	0.979	0.272	0.486	2.7e-36
UNIPROTKB|Q5ZL94	484	SLC17A5 "Uncharacterized prote	0.965	0.293	0.527	3.5e-36
UNIPROTKB|F1RQG9	497	SLC17A5 "Uncharacterized prote	0.965	0.285	0.513	1.1e-34
ZFIN|ZDB-GENE-060929-1158	489	slc17a5 "solute carrier family	0.959	0.288	0.503	1.1e-34
UNIPROTKB|Q9NRA2	495	SLC17A5 "Sialin" [Homo sapiens	0.965	0.286	0.506	1.3e-34

FB|FBgn0010497 dmGlut "Dietary and metabolic glutamate transporter" [Drosophila melanogaster (taxid:7227)]

 Score = 462 (167.7 bits), Expect = 8.1e-44, P = 8.1e-44
 Identities = 88/147 (59%), Positives = 107/147 (72%)

Query:     2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQS-ANWLIALRFFEGLGEGTTFPA 60
             HIPGGLLA+KFGGK TLG GILSTA+FT+LTP A  +  ++WLI  R   GLGEGTTFPA
Sbjct:   100 HIPGGLLAEKFGGKWTLGLGILSTAVFTMLTPLAINKGDSDWLIVTRVLMGLGEGTTFPA 159

Query:    61 LNTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSG-FLLKYTDGDWPEIFYLFGILGV 119
             L+ LLA WVP  ERGK+G+ V  G Q+GT+  + LSG F+  Y  G W  +FY FG LGV
Sbjct:   160 LSVLLAAWVPANERGKLGALVLGGGQVGTIMGNLLSGVFIDAY--G-WEFVFYFFGGLGV 216

Query:   120 LWFVAWCFLCYNDPASHPYISQREKEY 146
             +WF  + FLCY+DP SHP+I   E+EY
Sbjct:   217 VWFAIFMFLCYSDPTSHPFIKPSEREY 243

GO:0005316 "high affinity inorganic phosphate:sodium symporter activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0007005 "mitochondrion organization" evidence=IGI;IMP

GO:0006541 "glutamine metabolic process" evidence=IGI;IMP

GO:0015319 "sodium:inorganic phosphate symporter activity" evidence=IDA

GO:0044341 "sodium-dependent phosphate transport" evidence=IMP;IDA

GO:0051938 "L-glutamate import" evidence=IDA

GO:0005314 "high-affinity glutamate transmembrane transporter activity" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0015321 "sodium-dependent phosphate transmembrane transporter activity" evidence=IMP

FB|FBgn0030452 MFS10 "Major Facilitator Superfamily Transporter 10" [Drosophila melanogaster (taxid:7227)]

 Score = 423 (154.0 bits), Expect = 1.1e-39, P = 1.1e-39
 Identities = 72/145 (49%), Positives = 102/145 (70%)

Query:     3 IPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALN 62
             +PGG +A+ +GGK   G+G+L TA+FTL+TP AA      L+ +R  EG+GEG T+PA++
Sbjct:   158 VPGGRMAELYGGKKIYGYGVLITAVFTLITPLAAHWDLPLLVLVRILEGMGEGVTYPAMH 217

Query:    63 TLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLKYTD-GDWPEIFYLFGILGVLW 121
              +LA W+PP ER K  + V+AG+ IGTV S  L+G+L      G WP  FY+FG+LG+LW
Sbjct:   218 AMLAHWIPPLERNKFAAIVYAGSNIGTVISMPLAGWLCSLDFLGGWPSAFYIFGLLGILW 277

Query:   122 FVAWCFLCYNDPASHPYISQREKEY 146
             F+AW +L Y+ P+ HP IS+ E+EY
Sbjct:   278 FIAWMYLVYDKPSDHPRISESEREY 302

GO:0005316 "high affinity inorganic phosphate:sodium symporter activity" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

FB|FBgn0028513 CG9254 [Drosophila melanogaster (taxid:7227)]

 Score = 403 (146.9 bits), Expect = 1.5e-37, P = 1.5e-37
 Identities = 74/146 (50%), Positives = 100/146 (68%)

Query:     2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFA-ARQSANWLIALRFFEGLGEGTTFPA 60
             H+PGG+LA KFGGK TL  GI  TAIFTLLTP       A+ LI LR   GLGEGTTFPA
Sbjct:   105 HLPGGILADKFGGKWTLSLGIFFTAIFTLLTPVCIVYGGADALIVLRVLMGLGEGTTFPA 164

Query:    61 LNTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVL 120
             L+ LLA WVP  ERG +G+ V  G Q+G++  + +SG++L  +  DWP +FY+F I+ ++
Sbjct:   165 LSVLLASWVPANERGMLGALVLGGGQMGSIAGNIISGYVL--SSMDWPWVFYVFAIIALV 222

Query:   121 WFVAWCFLCYNDPASHPYISQREKEY 146
             WFV +  +C++ P +HPYI   E+ +
Sbjct:   223 WFVVFTLVCFSSPFTHPYIKPEERAF 248

GO:0005436 "sodium:phosphate symporter activity" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|E2R8R4 SLC17A5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 400 (145.9 bits), Expect = 3.0e-37, P = 3.0e-37
 Identities = 77/144 (53%), Positives = 96/144 (66%)

Query:     3 IPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALN 62
             IPGG +A K GGK  LGFGIL TA+FTL TP AA      LI LR  EGLGEG TFPA++
Sbjct:   124 IPGGYIASKVGGKLLLGFGILGTAVFTLFTPIAADFGVGALIVLRALEGLGEGVTFPAMH 183

Query:    63 TLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWF 122
              + + W PP ER K+ S  +AG Q+GTV S  LSG +  Y +  W  +FYLFGI+G++WF
Sbjct:   184 AMWSSWAPPLERSKLLSISYAGAQLGTVISLPLSGIICFYMN--WTYVFYLFGIVGIIWF 241

Query:   123 VAWCFLCYNDPASHPYISQREKEY 146
             + W FL    P +H  IS++EKEY
Sbjct:   242 ILWIFLVSETPETHKTISRQEKEY 265

GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=IEA

GO:0015739 "sialic acid transport" evidence=IEA

GO:0015136 "sialic acid transmembrane transporter activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005765 "lysosomal membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|O61369 Picot "Putative inorganic phosphate cotransporter" [Drosophila ananassae (taxid:7217)]

 Score = 397 (144.8 bits), Expect = 6.3e-37, P = 6.3e-37
 Identities = 71/146 (48%), Positives = 100/146 (68%)

Query:     3 IPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANW-LIALRFFEGLGEGTTFPAL 61
             IP G+LA+K+G    LG+G+L  ++F  L P AAR+   W L A+RF +GLGEG   P  
Sbjct:    78 IPFGILAKKYGSLRFLGYGMLINSVFAFLVPVAAREGGVWGLCAVRFIQGLGEGPIVPCT 137

Query:    62 NTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLKYT-DGDWPEIFYLFGILGVL 120
             + +LA+W+PP ER ++G+ V+AG Q GT+ S  LSG L +Y  DG WP IFY+FGI+G +
Sbjct:   138 HAMLAKWIPPNERSRMGAAVYAGAQFGTIISMPLSGLLAEYGFDGGWPSIFYVFGIVGTV 197

Query:   121 WFVAWCFLCYNDPASHPYISQREKEY 146
             W +A+    Y DP++HP I +REK+Y
Sbjct:   198 WSIAFLIFVYEDPSTHPKIDEREKKY 223

GO:0005315 "inorganic phosphate transmembrane transporter activity" evidence=NAS

GO:0006817 "phosphate ion transport" evidence=NAS

GO:0016021 "integral to membrane" evidence=NAS

FB|FBgn0024315 Picot "Picot" [Drosophila melanogaster (taxid:7227)]

 Score = 391 (142.7 bits), Expect = 2.7e-36, P = 2.7e-36
 Identities = 71/146 (48%), Positives = 99/146 (67%)

Query:     3 IPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANW-LIALRFFEGLGEGTTFPAL 61
             IP G+LA+K+G    LG+G+L  ++F  L P AAR    W L A+RF +GLGEG   P  
Sbjct:   124 IPFGILAKKYGSLRFLGYGMLINSVFAFLVPVAARGGGVWGLCAVRFIQGLGEGPIVPCT 183

Query:    62 NTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLKYT-DGDWPEIFYLFGILGVL 120
             + +LA+W+PP ER ++G+ V+AG Q GT+ S  LSG L +Y  DG WP IFY+FGI+G +
Sbjct:   184 HAMLAKWIPPNERSRMGAAVYAGAQFGTIISMPLSGLLAEYGFDGGWPSIFYVFGIVGTV 243

Query:   121 WFVAWCFLCYNDPASHPYISQREKEY 146
             W +A+    + DP+SHP I +REK+Y
Sbjct:   244 WSIAFLIFVHEDPSSHPTIDEREKKY 269

GO:0005316 "high affinity inorganic phosphate:sodium symporter activity" evidence=NAS

GO:0006817 "phosphate ion transport" evidence=NAS

GO:0016021 "integral to membrane" evidence=IEA;NAS

GO:0015114 "phosphate ion transmembrane transporter activity" evidence=IEA

GO:0035435 "phosphate ion transmembrane transport" evidence=IEA

UNIPROTKB|Q5ZL94 SLC17A5 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 390 (142.3 bits), Expect = 3.5e-36, P = 3.5e-36
 Identities = 76/144 (52%), Positives = 97/144 (67%)

Query:     3 IPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALN 62
             IPGG LA K GGK  LGFGI  T++FTLLTP AA     +LIA+R  EGLGEG TFPA++
Sbjct:   113 IPGGYLASKIGGKLLLGFGIFGTSVFTLLTPLAADLGVGYLIAVRALEGLGEGVTFPAMH 172

Query:    63 TLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWF 122
             ++ + W PP ER K+ S  +AG Q+GTV S  LSG +  Y +  W  +FY+FG LGVLWF
Sbjct:   173 SMWSSWAPPLERSKLLSISYAGAQLGTVVSLPLSGLICYYMN--WVYVFYIFGALGVLWF 230

Query:   123 VAWCFLCYNDPASHPYISQREKEY 146
               W +L  + P +H  IS+ E+EY
Sbjct:   231 FFWMWLVSDKPETHKSISRIEREY 254

GO:0016021 "integral to membrane" evidence=IEA

GO:0005765 "lysosomal membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0015136 "sialic acid transmembrane transporter activity" evidence=IEA

GO:0015739 "sialic acid transport" evidence=IEA

GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=IEA

UNIPROTKB|F1RQG9 SLC17A5 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 376 (137.4 bits), Expect = 1.1e-34, P = 1.1e-34
 Identities = 75/146 (51%), Positives = 97/146 (66%)

Query:     3 IPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALN 62
             IPGG +A + GGK  LGFGIL T++FTLLTP AA      LIALR  EGLGEG TFPA++
Sbjct:   124 IPGGYIASRSGGKLLLGFGILGTSVFTLLTPLAADFGVGALIALRALEGLGEGVTFPAMH 183

Query:    63 TLLAQWVPPTERGKIGSFVFA--GNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVL 120
              + + W PP ER K+ S  +A  G Q+GTV S  LSG +  Y +  W  +FYLFG++G++
Sbjct:   184 AMWSSWAPPLERSKLLSISYAVLGAQLGTVVSLPLSGIICFYLN--WTYVFYLFGLVGII 241

Query:   121 WFVAWCFLCYNDPASHPYISQREKEY 146
             WF+ W +L  + P +H  IS  EKEY
Sbjct:   242 WFILWTWLVSDTPDTHRTISPYEKEY 267

GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=IEA

GO:0015739 "sialic acid transport" evidence=IEA

GO:0015136 "sialic acid transmembrane transporter activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005765 "lysosomal membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

ZFIN|ZDB-GENE-060929-1158 slc17a5 "solute carrier family 17 (anion/sugar transporter), member 5" [Danio rerio (taxid:7955)]

 Score = 376 (137.4 bits), Expect = 1.1e-34, P = 1.1e-34
 Identities = 73/145 (50%), Positives = 97/145 (66%)

Query:     3 IPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALN 62
             IPGG LA+K+G K  LG GIL T IFTLLTP AA   A +LIA+R  EG+GEG T+PA++
Sbjct:   119 IPGGYLARKYGAKWLLGLGILCTVIFTLLTPLAADLGAGYLIAVRVLEGIGEGVTYPAMH 178

Query:    63 TLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWF 122
              + A W PP ER ++ +  + G Q+GTV +  LSG +  Y D  W  +FY+FG +G+LWF
Sbjct:   179 AMWASWAPPLERSRLLTISYTGAQLGTVVALPLSGQICFYLD--WTYVFYIFGAVGLLWF 236

Query:   123 VAW-CFLCYNDPASHPYISQREKEY 146
               W CF+  N P+SH  I++ EK Y
Sbjct:   237 FLWICFVS-NSPSSHKRITEAEKTY 260

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

UNIPROTKB|Q9NRA2 SLC17A5 "Sialin" [Homo sapiens (taxid:9606)]

 Score = 375 (137.1 bits), Expect = 1.3e-34, P = 1.3e-34
 Identities = 73/144 (50%), Positives = 90/144 (62%)

Query:     3 IPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALN 62
             IPGG +A K GGK  LGFGIL TA+ TL TP AA      LI LR  EGLGEG TFPA++
Sbjct:   124 IPGGYVASKIGGKMLLGFGILGTAVLTLFTPIAADLGVGPLIVLRALEGLGEGVTFPAMH 183

Query:    63 TLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWF 122
              + + W PP ER K+ S  +AG Q+GTV S  LSG +  Y +  W  +FY FG +G+ WF
Sbjct:   184 AMWSSWAPPLERSKLLSISYAGAQLGTVISLPLSGIICYYMN--WTYVFYFFGTIGIFWF 241

Query:   123 VAWCFLCYNDPASHPYISQREKEY 146
             + W +L  + P  H  IS  EKEY
Sbjct:   242 LLWIWLVSDTPQKHKRISHYEKEY 265

GO:0006865 "amino acid transport" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0030672 "synaptic vesicle membrane" evidence=IEA

GO:0016020 "membrane" evidence=TAS

GO:0005351 "sugar:hydrogen symporter activity" evidence=TAS

GO:0005765 "lysosomal membrane" evidence=IDA;TAS

GO:0015136 "sialic acid transmembrane transporter activity" evidence=IDA

GO:0015739 "sialic acid transport" evidence=IDA

GO:0005887 "integral to plasma membrane" evidence=TAS

GO:0006820 "anion transport" evidence=TAS

GO:0006811 "ion transport" evidence=TAS

GO:0055085 "transmembrane transport" evidence=TAS

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9NRA2	S17A5_HUMAN	No assigned EC number	0.5034	0.9727	0.2888	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	147
TIGR00894	465	TIGR00894, 2A0114euk, Na(+)-dependent inorganic ph	7e-33
TIGR00893	399	TIGR00893, 2A0114, D-galactonate transporter	7e-19
pfam07690	346	pfam07690, MFS_1, Major Facilitator Superfamily	3e-18
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	1e-16
TIGR00895	398	TIGR00895, 2A0115, benzoate transport	6e-14
TIGR00881	379	TIGR00881, 2A0104, phosphoglycerate transporter fa	2e-12
PRK11551	406	PRK11551, PRK11551, putative 3-hydroxyphenylpropio	6e-10
TIGR00880	141	TIGR00880, 2_A_01_02, Multidrug resistance protein	5e-07
pfam00083	449	pfam00083, Sugar_tr, Sugar (and other) transporter	9e-07
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	2e-06
TIGR00898	505	TIGR00898, 2A0119, cation transport protein	2e-06
COG2271	448	COG2271, UhpC, Sugar phosphate permease [Carbohydr	4e-06
TIGR00886	366	TIGR00886, 2A0108, nitrite extrusion protein (nitr	2e-05
pfam07690	346	pfam07690, MFS_1, Major Facilitator Superfamily	1e-04
TIGR00883	394	TIGR00883, 2A0106, metabolite-proton symporter	2e-04
COG2223	417	COG2223, NarK, Nitrate/nitrite transporter [Inorga	2e-04
TIGR00711	485	TIGR00711, efflux_EmrB, drug resistance transporte	5e-04
TIGR02332	412	TIGR02332, HpaX, 4-hydroxyphenylacetate permease	0.002
PRK10473	392	PRK10473, PRK10473, multidrug efflux system protei	0.004

>gnl|CDD|129972 TIGR00894, 2A0114euk, Na(+)-dependent inorganic phosphate cotransporter

 Score =  119 bits (301), Expect = 7e-33
 Identities = 51/146 (34%), Positives = 86/146 (58%), Gaps = 1/146 (0%)

Query: 1   MHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPA 60
           + IP G LA K+  K ++G G+  +++ +++ P+AA      ++  R  +GL +G+  PA
Sbjct: 92  IQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPA 151

Query: 61  LNTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVL 120
            + ++ +W PP ER ++     +G Q+GT     +SG+L +   G WP IFY+FGI+G  
Sbjct: 152 THKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCES-WGGWPMIFYVFGIVGCA 210

Query: 121 WFVAWCFLCYNDPASHPYISQREKEY 146
           W + W     +DP+ HP IS+ EK+Y
Sbjct: 211 WSLLWFVFPADDPSIHPCISKFEKKY 236

[Transport and binding proteins, Anions]. Length = 465

>gnl|CDD|233174 TIGR00893, 2A0114, D-galactonate transporter

 Score = 81.2 bits (201), Expect = 7e-19
 Identities = 43/147 (29%), Positives = 63/147 (42%), Gaps = 5/147 (3%)

Query: 1   MHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPA 60
              PGG L  +FG + TL   I+   +FT L  FA    +  L  LR   G  E   FP 
Sbjct: 45  GQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAYVS--LYILRVLLGAAEAPFFPG 102

Query: 61  LNTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVL 120
           +  ++A W P +ER    S   +   +G +    L G++L      W   F + G+LG++
Sbjct: 103 IILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWIL--IHFSWQWAFIIEGVLGII 160

Query: 121 WFVAWCFLCYNDPASHPYISQREKEYK 147
           W V W      DP         E++Y 
Sbjct: 161 WGVLW-LKFIPDPPQKAKWLTEEEKYI 186

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 399

>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily

 Score = 79.0 bits (195), Expect = 3e-18
 Identities = 46/143 (32%), Positives = 61/143 (42%), Gaps = 4/143 (2%)

Query: 3   IPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALN 62
              G L+ +FG +  L  G+L  A+  LL  FA+  S   L+ LR  +GLG G  FPA  
Sbjct: 50  PLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFAS--SLWLLLVLRVLQGLGGGALFPAAA 107

Query: 63  TLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWF 122
            L+A W PP ERG+    + AG  +G      L G L       W   F +  IL +L  
Sbjct: 108 ALIADWFPPEERGRALGLLSAGFGLGAALGPLLGGLLASL--FGWRAAFLILAILALLAA 165

Query: 123 VAWCFLCYNDPASHPYISQREKE 145
           V    L    P         E+ 
Sbjct: 166 VLAALLLPRPPPESKRPKPAEEA 188

Length = 346

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 74.7 bits (184), Expect = 1e-16
 Identities = 44/126 (34%), Positives = 63/126 (50%), Gaps = 4/126 (3%)

Query: 3   IPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALN 62
           +  G L+ +FG +  L  G+L  A+ +LL  FA   S   L+  RF  GLG G  +PA  
Sbjct: 52  LLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFA--SSLWLLLVGRFLLGLGGGALYPAAA 109

Query: 63  TLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWF 122
            L+A+W PP ERG+      AG  +G +    L G L +     W  +F +  ILG+L  
Sbjct: 110 ALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAES--LGWRWLFLILAILGLLLA 167

Query: 123 VAWCFL 128
           +   FL
Sbjct: 168 LLLLFL 173

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport

 Score = 67.0 bits (164), Expect = 6e-14
 Identities = 42/122 (34%), Positives = 61/122 (50%), Gaps = 6/122 (4%)

Query: 5   GGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTL 64
            G LA + G +  L + IL  ++FTLL   A   +   L+ LRF  GLG G   P LN L
Sbjct: 72  FGPLADRIGRRRVLLWSILLFSVFTLLCALA--TNVTQLLILRFLAGLGLGGLMPNLNAL 129

Query: 65  LAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGI--LGVLWF 122
           ++++ P   RG     +F G  IG     FL+G+L+      W  +FY+ GI  L +L  
Sbjct: 130 VSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLI--PVFGWRSLFYVGGIAPLLLLLL 187

Query: 123 VA 124
           + 
Sbjct: 188 LM 189

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398

>gnl|CDD|233167 TIGR00881, 2A0104, phosphoglycerate transporter family protein

 Score = 63.2 bits (154), Expect = 2e-12
 Identities = 29/133 (21%), Positives = 52/133 (39%), Gaps = 3/133 (2%)

Query: 3   IPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALN 62
              G ++ +   +  L  G++  AI  L   F    S   + AL    G+ +G  +P   
Sbjct: 48  FVMGSVSDRSNPRVFLPIGLILCAIVNLF--FGFSTSLWVMAALWALNGIFQGMGWPPCG 105

Query: 63  TLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWF 122
             + +W   +ERG   SF    + +G      L  F +      W  +F + GI+ ++  
Sbjct: 106 RTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAEL-YSWHWVFIVPGIIAIIVS 164

Query: 123 VAWCFLCYNDPAS 135
           +    L  + P S
Sbjct: 165 LICFLLLRDSPQS 177

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 379

>gnl|CDD|236927 PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

 Score = 55.7 bits (135), Expect = 6e-10
 Identities = 34/112 (30%), Positives = 50/112 (44%), Gaps = 4/112 (3%)

Query: 5   GGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTL 64
           GG LA + G K  L   +    +F+L T  A    +  L+  R   G+G G   P L  L
Sbjct: 70  GGRLADRIGRKRILIVSVALFGLFSLATAQAWDFPS--LLVARLLTGVGLGGALPNLIAL 127

Query: 65  LAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGI 116
            ++ V P  RG   S ++ G   G   +S +   +L   D  W  IFY+ G+
Sbjct: 128 TSEAVGPRLRGTAVSLMYCGVPFGGALASVIG--VLAAGDAAWRHIFYVGGV 177

Length = 406

>gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein

 Score = 45.7 bits (109), Expect = 5e-07
 Identities = 40/127 (31%), Positives = 53/127 (41%), Gaps = 6/127 (4%)

Query: 3   IPGGLLAQKFGGKHTLGFGILSTAIFTLLT-PFAARQSANWLIALRFFEGLGEGTTFPAL 61
              GLL  +FG K  L   ++   IF L T  FA   +   LI  RF +G G      A 
Sbjct: 16  PLSGLLTDRFGRKPVL---LVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAG 72

Query: 62  NTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLW 121
             L+A   PP ERG     + AG  +G +    L G L ++    W   F    IL +  
Sbjct: 73  AALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFL--GWRAPFLFLAILALAA 130

Query: 122 FVAWCFL 128
           F+   FL
Sbjct: 131 FILLAFL 137

Length = 141

>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter

 Score = 46.5 bits (111), Expect = 9e-07
 Identities = 34/126 (26%), Positives = 49/126 (38%), Gaps = 3/126 (2%)

Query: 5   GGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTL 64
            G L  +FG K +L  G +   I  LL  FA  +S   LI  R   GLG G     +   
Sbjct: 66  AGKLGDRFGRKKSLLIGNVLFVIGALLQGFAKGKSFYMLIVGRVIVGLGVGGISVLVPMY 125

Query: 65  LAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGD--WPEIFYLFGILGVLWF 122
           +++  P   RG +GS    G   G +  + + G  L        W     L  +  +L  
Sbjct: 126 ISEIAPKKLRGALGSLYQLGITFGILV-AAIIGLGLNKYSNSDGWRIPLGLQFVPAILLL 184

Query: 123 VAWCFL 128
           +   FL
Sbjct: 185 IGLLFL 190

Length = 449

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 45.4 bits (108), Expect = 2e-06
 Identities = 36/127 (28%), Positives = 52/127 (40%), Gaps = 5/127 (3%)

Query: 3   IPGGLLAQKFGGK-HTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPAL 61
           + GGLL+ + G +   L  G+L  A+  LL   A   S   L+      G G G  FPAL
Sbjct: 229 LLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAP--SLALLLVALLLLGFGLGFAFPAL 286

Query: 62  NTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLW 121
            TL ++  PP  RG           +G      L+G L     G +  +F +   L +L 
Sbjct: 287 LTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLL--LDTGGYGGVFLILAALALLA 344

Query: 122 FVAWCFL 128
            +    L
Sbjct: 345 ALLLLLL 351

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein

 Score = 45.8 bits (109), Expect = 2e-06
 Identities = 28/124 (22%), Positives = 53/124 (42%), Gaps = 7/124 (5%)

Query: 6   GLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLL 65
           G L+ +FG K  L    L TA+  +LT F+   +    +  R   G+G G  +     L 
Sbjct: 148 GYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYT--VFLVFRLLVGMGIGGIWVQAVVLN 205

Query: 66  AQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAW 125
            +++P  +R  +G+ +     +G V    ++ F+      DW  +     +   L+F+  
Sbjct: 206 TEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIP-----DWRWLQLAVSLPTFLFFLLS 260

Query: 126 CFLC 129
            F+ 
Sbjct: 261 WFVP 264

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 505

>gnl|CDD|225180 COG2271, UhpC, Sugar phosphate permease [Carbohydrate transport and metabolism]

 Score = 44.6 bits (106), Expect = 4e-06
 Identities = 30/130 (23%), Positives = 52/130 (40%), Gaps = 2/130 (1%)

Query: 6   GLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLL 65
           G+L+ +   ++ + FG++ +AI  +L  F    S      L    G  +G  +P     +
Sbjct: 85  GVLSDRSNPRYFMAFGLILSAIVNIL--FGFSPSLFLFAVLWVLNGWFQGMGWPPCARTI 142

Query: 66  AQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAW 125
             W    ERG   S     + IG   +  ++        G W   FY  GI+ ++  +  
Sbjct: 143 THWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVALIL 202

Query: 126 CFLCYNDPAS 135
            FL  + P S
Sbjct: 203 LFLLRDRPQS 212

Length = 448

>gnl|CDD|233170 TIGR00886, 2A0108, nitrite extrusion protein (nitrite facilitator)

 Score = 43.1 bits (102), Expect = 2e-05
 Identities = 35/147 (23%), Positives = 55/147 (37%), Gaps = 15/147 (10%)

Query: 1   MHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPA 60
           + I  G L  KFG ++T    +L  AI  L     A QS + L+ LR F G+  G +F +
Sbjct: 53  LRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGL-AVQSYSVLLLLRLFIGIA-GGSFAS 110

Query: 61  LNTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSF----LSGFLLK------YTDGDWPEI 110
               ++ + P   +G           +G   + F    + G L+       +    W  +
Sbjct: 111 CMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFV 170

Query: 111 FYLFGIL---GVLWFVAWCFLCYNDPA 134
               GIL    +L F          PA
Sbjct: 171 IVPAGILLLPALLIFFVGADTPPGKPA 197

[Transport and binding proteins, Anions]. Length = 366

>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily

 Score = 40.1 bits (94), Expect = 1e-04
 Identities = 24/94 (25%), Positives = 37/94 (39%), Gaps = 1/94 (1%)

Query: 1   MHIPGGLLAQKFGGKHTLGFGILSTAIFTL-LTPFAARQSANWLIALRFFEGLGEGTTFP 59
             +  G L+ + G +  L   +L   +  L L   +  +S+ WL+      G G G  FP
Sbjct: 253 GRLLLGRLSDRLGRRRRLLLALLLLILAALGLALLSLTESSLWLLVALLLLGFGAGLVFP 312

Query: 60  ALNTLLAQWVPPTERGKIGSFVFAGNQIGTVFSS 93
           ALN L++   P  ERG           +G     
Sbjct: 313 ALNALVSDLAPKEERGTASGLYNTAGSLGGALGP 346

Length = 346

>gnl|CDD|233168 TIGR00883, 2A0106, metabolite-proton symporter

 Score = 39.6 bits (93), Expect = 2e-04
 Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 1/64 (1%)

Query: 43  LIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLKY 102
           L+  R  +G   G  +      LA++ PP +RG  GSF   G  +G + ++ L+  LL Y
Sbjct: 99  LLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAA-LTVLLLSY 157

Query: 103 TDGD 106
             GD
Sbjct: 158 LLGD 161

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc [Transport and binding proteins, Unknown substrate]. Length = 394

>gnl|CDD|225133 COG2223, NarK, Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

 Score = 39.6 bits (93), Expect = 2e-04
 Identities = 26/137 (18%), Positives = 50/137 (36%), Gaps = 4/137 (2%)

Query: 3   IPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANW-LIALRFFEGLGEGTTFPAL 61
           +P G L  +FGG+      +L   I  L   FA    + W L+ +    GL  G +F   
Sbjct: 67  LPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYPSTWQLLVIGLLLGLA-GASFAVG 125

Query: 62  NTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLK-YTDGDWPEIFYLFGILGVL 120
               + + P  ++G       AGN +G   +  ++  +   +    W  +  ++ +   +
Sbjct: 126 MPNASFFFPKEKQGLALGIAGAGN-LGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAI 184

Query: 121 WFVAWCFLCYNDPASHP 137
             V       + P    
Sbjct: 185 AAVLAWLGMNDVPEHRA 201

Length = 417

>gnl|CDD|129794 TIGR00711, efflux_EmrB, drug resistance transporter, EmrB/QacA subfamily

 Score = 38.5 bits (90), Expect = 5e-04
 Identities = 32/133 (24%), Positives = 57/133 (42%), Gaps = 7/133 (5%)

Query: 6   GLLAQKFGGKHTLGFGILSTAIFTLLTPFAAR-QSANWLIALRFFEGLGEGTTFPALNTL 64
           G LA++FG +      ++ST  FTL +       +   +I  R  +G G G   P   + 
Sbjct: 58  GWLAKRFGTRRLF---LISTFAFTLGSLLCGVAPNLELMIIFRVIQGFGGGPLIPLSFST 114

Query: 65  LAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFV- 123
           L    PP +RG+  +       +       L G++++     W  IF +   +G++  V 
Sbjct: 115 LLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENY--HWRWIFLINVPIGIIVVVV 172

Query: 124 AWCFLCYNDPASH 136
           A+  L  + PA+ 
Sbjct: 173 AFFILPRDKPAAS 185

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other]. Length = 485

>gnl|CDD|131385 TIGR02332, HpaX, 4-hydroxyphenylacetate permease

 Score = 36.9 bits (85), Expect = 0.002
 Identities = 32/148 (21%), Positives = 54/148 (36%), Gaps = 8/148 (5%)

Query: 3   IPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALN 62
           IP  ++    G +  +   ++   I +  T FA       L  LR   G+ E    P + 
Sbjct: 61  IPSNIMLAIIGARRWIAGIMVLWGIASTATMFAT--GPESLYLLRILVGIAEAGFLPGIL 118

Query: 63  TLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLKYTDG-----DWPEIFYLFGIL 117
             L  W P   R +  +       +       LSG++L   DG      W  +F L G  
Sbjct: 119 LYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILAL-DGLMALKGWQWLFLLEGFP 177

Query: 118 GVLWFVAWCFLCYNDPASHPYISQREKE 145
            V+  V   F   + P    ++ + +K+
Sbjct: 178 SVILGVMTWFWLDDSPDKAKWLDEEDKK 205

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PMID:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. Length = 412

>gnl|CDD|182486 PRK10473, PRK10473, multidrug efflux system protein MdtL; Provisional

 Score = 35.8 bits (83), Expect = 0.004
 Identities = 30/123 (24%), Positives = 51/123 (41%), Gaps = 12/123 (9%)

Query: 5   GGLLAQKFGGKHTLGFGILSTAIFTLLTPFAAR--QSANWLIALRFFEGLGEGTTFPALN 62
            G +A + G K     G    A+F + +   +    S+ +L   RF +G+G G  +    
Sbjct: 58  AGKIADRSGRKPVAIPG---AALFIIASLLCSLAETSSLFLAG-RFLQGIGAGCCYVVAF 113

Query: 63  TLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFL--LKYTDGDWPEIFYLFGILGVL 120
            +L   +    R K+ S +     I  V +  L G L  LK+    W  +FY    +G+L
Sbjct: 114 AILRDTLDDRRRAKVLSLLNGITCIIPVLAPVL-GHLIMLKF---PWQSLFYTMAAMGIL 169

Query: 121 WFV 123
             +
Sbjct: 170 VLL 172

Length = 392

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	147
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.87
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.84
PRK03545	390	putative arabinose transporter; Provisional	99.84
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.84
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.84
TIGR00893	399	2A0114 d-galactonate transporter.	99.84
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.84
PRK10642	490	proline/glycine betaine transporter; Provisional	99.84
KOG2532|consensus	466		99.83
KOG1330|consensus	493		99.83
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.83
PRK11663	434	regulatory protein UhpC; Provisional	99.82
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.82
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.82
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.82
PRK09952	438	shikimate transporter; Provisional	99.82
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.82
TIGR00900	365	2A0121 H+ Antiporter protein.	99.81
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.81
TIGR00891	405	2A0112 putative sialic acid transporter.	99.81
PRK10091	382	MFS transport protein AraJ; Provisional	99.81
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.81
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.8
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.8
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.8
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.79
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.79
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.79
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.79
PRK09705	393	cynX putative cyanate transporter; Provisional	99.78
TIGR00898	505	2A0119 cation transport protein.	99.78
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.78
PRK12307	426	putative sialic acid transporter; Provisional	99.77
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.77
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.77
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	99.77
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.77
PRK15075	434	citrate-proton symporter; Provisional	99.76
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.76
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.76
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.76
PRK03699	394	putative transporter; Provisional	99.76
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.76
KOG0255|consensus	521		99.75
PRK10504	471	putative transporter; Provisional	99.75
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.75
KOG2533|consensus	495		99.75
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.75
PRK10054	395	putative transporter; Provisional	99.75
PRK09874	408	drug efflux system protein MdtG; Provisional	99.75
TIGR00895	398	2A0115 benzoate transport.	99.75
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.75
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.75
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.75
PLN00028	476	nitrate transmembrane transporter; Provisional	99.74
PRK05122	399	major facilitator superfamily transporter; Provisi	99.73
KOG0254|consensus	513		99.73
PRK11043	401	putative transporter; Provisional	99.73
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.73
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.73
PRK03893	496	putative sialic acid transporter; Provisional	99.72
KOG3764|consensus	464		99.72
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.72
PRK12382	392	putative transporter; Provisional	99.71
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.69
KOG2615|consensus	451		99.69
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.68
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.68
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.66
KOG0569|consensus	485		99.66
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.66
TIGR00805	633	oat sodium-independent organic anion transporter.	99.66
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.66
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.66
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.65
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.65
PRK10489	417	enterobactin exporter EntS; Provisional	99.65
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.65
PRK05122	399	major facilitator superfamily transporter; Provisi	99.65
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	99.64
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	99.64
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.64
TIGR00901	356	2A0125 AmpG-related permease.	99.63
PRK03633	381	putative MFS family transporter protein; Provision	99.63
PTZ00207	591	hypothetical protein; Provisional	99.62
PRK10133	438	L-fucose transporter; Provisional	99.62
PRK11010	491	ampG muropeptide transporter; Validated	99.62
PRK15011	393	sugar efflux transporter B; Provisional	99.61
PRK12382	392	putative transporter; Provisional	99.59
KOG0252|consensus	538		99.58
PRK09874	408	drug efflux system protein MdtG; Provisional	99.58
PRK09528	420	lacY galactoside permease; Reviewed	99.58
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.58
PRK10642	490	proline/glycine betaine transporter; Provisional	99.58
PRK11902	402	ampG muropeptide transporter; Reviewed	99.56
PRK10489	417	enterobactin exporter EntS; Provisional	99.53
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.52
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.5
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.49
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.48
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.48
PRK15011	393	sugar efflux transporter B; Provisional	99.48
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.48
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.47
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.47
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.44
PRK03893	496	putative sialic acid transporter; Provisional	99.44
KOG2504|consensus	509		99.44
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.44
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.43
PRK03545	390	putative arabinose transporter; Provisional	99.43
PRK09952	438	shikimate transporter; Provisional	99.42
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	99.42
TIGR00898	505	2A0119 cation transport protein.	99.4
KOG0253|consensus	528		99.4
PRK09528	420	lacY galactoside permease; Reviewed	99.39
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.39
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.39
PRK12307	426	putative sialic acid transporter; Provisional	99.38
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.38
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	99.37
PRK03633	381	putative MFS family transporter protein; Provision	99.36
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	99.36
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.35
PRK09705	393	cynX putative cyanate transporter; Provisional	99.34
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.33
KOG0253|consensus	528		99.3
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.3
PRK11663	434	regulatory protein UhpC; Provisional	99.29
PRK03699	394	putative transporter; Provisional	99.29
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.27
PRK10054	395	putative transporter; Provisional	99.26
PRK11010	491	ampG muropeptide transporter; Validated	99.26
TIGR00893	399	2A0114 d-galactonate transporter.	99.25
TIGR00891	405	2A0112 putative sialic acid transporter.	99.25
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.25
PRK10504	471	putative transporter; Provisional	99.24
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.23
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.22
PRK15075	434	citrate-proton symporter; Provisional	99.2
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.19
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.18
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.17
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.17
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.16
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.14
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.14
TIGR00900	365	2A0121 H+ Antiporter protein.	99.13
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.12
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.12
PRK09669	444	putative symporter YagG; Provisional	99.11
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.11
PLN00028	476	nitrate transmembrane transporter; Provisional	99.08
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.08
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	99.08
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.07
KOG0569|consensus	485		99.07
PRK09848	448	glucuronide transporter; Provisional	99.06
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.04
PRK11902	402	ampG muropeptide transporter; Reviewed	99.04
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.03
PRK10429	473	melibiose:sodium symporter; Provisional	99.02
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.02
KOG2816|consensus	463		99.01
TIGR00788	468	fbt folate/biopterin transporter. The only functio	99.0
TIGR00895	398	2A0115 benzoate transport.	99.0
PRK10091	382	MFS transport protein AraJ; Provisional	98.99
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	98.97
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	98.97
PRK09669	444	putative symporter YagG; Provisional	98.96
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	98.96
PF13347	428	MFS_2: MFS/sugar transport protein	98.96
KOG3762|consensus	618		98.93
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	98.92
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	98.91
PRK10473	392	multidrug efflux system protein MdtL; Provisional	98.91
PRK14995	495	methyl viologen resistance protein SmvA; Provision	98.91
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	98.91
PRK11462	460	putative transporter; Provisional	98.9
PRK11195	393	lysophospholipid transporter LplT; Provisional	98.89
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	98.89
PRK10213	394	nepI ribonucleoside transporter; Reviewed	98.88
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	98.88
KOG2325|consensus	488		98.87
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	98.86
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	98.86
KOG2563|consensus	480		98.85
TIGR00788	468	fbt folate/biopterin transporter. The only functio	98.85
COG0477	338	ProP Permeases of the major facilitator superfamil	98.81
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	98.8
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	98.79
PRK10429	473	melibiose:sodium symporter; Provisional	98.79
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	98.79
KOG2504|consensus	509		98.78
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	98.78
PF13347	428	MFS_2: MFS/sugar transport protein	98.78
PRK09584	500	tppB putative tripeptide transporter permease; Rev	98.76
PRK11043	401	putative transporter; Provisional	98.75
TIGR00896	355	CynX cyanate transporter. This family of proteins	98.75
KOG4686|consensus	459		98.75
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	98.72
TIGR00901	356	2A0125 AmpG-related permease.	98.71
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	98.71
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	98.7
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	98.7
PRK10133	438	L-fucose transporter; Provisional	98.69
KOG0252|consensus	538		98.68
PRK10207	489	dipeptide/tripeptide permease B; Provisional	98.65
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	98.64
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	98.63
COG2211	467	MelB Na+/melibiose symporter and related transport	98.63
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	98.61
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	98.61
KOG0254|consensus	513		98.59
KOG0255|consensus	521		98.55
COG2211	467	MelB Na+/melibiose symporter and related transport	98.54
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	98.54
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	98.52
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	98.49
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	98.48
PRK11462	460	putative transporter; Provisional	98.43
PRK09848	448	glucuronide transporter; Provisional	98.38
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	98.36
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	98.35
PRK11652	394	emrD multidrug resistance protein D; Provisional	98.28
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	98.26
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	98.22
KOG3764|consensus	464		98.22
KOG2532|consensus	466		98.15
PRK15403	413	multidrug efflux system protein MdtM; Provisional	98.06
KOG4686|consensus	459		98.01
KOG3626|consensus	735		97.92
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	97.84
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	97.76
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	97.74
COG2270	438	Permeases of the major facilitator superfamily [Ge	97.68
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	97.6
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	97.54
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	97.51
PRK15462	493	dipeptide/tripeptide permease D; Provisional	97.42
KOG2816|consensus	463		97.41
KOG2615|consensus	451		97.29
KOG3098|consensus	461		97.22
PTZ00207	591	hypothetical protein; Provisional	97.2
KOG1237|consensus	571		97.08
KOG0637|consensus	498		96.98
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	96.97
KOG4332|consensus	454		96.85
KOG2533|consensus	495		96.45
KOG3098|consensus	461		96.02
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	95.96
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	95.88
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	95.85
KOG2325|consensus	488		94.96
KOG2563|consensus	480		94.73
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	94.7
PF12832	77	MFS_1_like: MFS_1 like family	94.51
PRK03612	521	spermidine synthase; Provisional	93.76
KOG3810|consensus	433		93.19
KOG3880|consensus	409		93.03
KOG3574|consensus	510		92.74
KOG1330|consensus	493		91.69
COG3202	509	ATP/ADP translocase [Energy production and convers	91.43
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	90.86
KOG3880|consensus	409		89.8
KOG4332|consensus	454		88.73
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	88.42
KOG0637|consensus	498		85.16
KOG1237|consensus	571		82.51
KOG3626|consensus	735		81.35

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.87  E-value=2.1e-21  Score=138.99  Aligned_cols=133  Identities=22%  Similarity=0.350  Sum_probs=117.8

Q ss_pred             CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHH
Q psy4740           2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFV   81 (147)
Q Consensus         2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~   81 (147)
                      +++.|+++||+|||+++..+.++..+++..+++.  ++++.+++.|++.|++.+...+....++.|++|+++|++.++++
T Consensus        60 ~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~  137 (412)
T TIGR02332        60 GIPSNIMLAIIGARRWIAGIMVLWGIASTATMFA--TGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALF  137 (412)
T ss_pred             HhhHHHHHHHhChHHHHHHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence            5788999999999999999999999999999888  88999999999999999999998889999999999999999999


Q ss_pred             HhhhhhHHHHHHHHHHHHHhh----cCCChhHHHHHHHHHHHHHHHHHHhhccCCCCCC
Q psy4740          82 FAGNQIGTVFSSFLSGFLLKY----TDGDWPEIFYLFGILGVLWFVAWCFLCYNDPASH  136 (147)
Q Consensus        82 ~~~~~~g~~~~~~~~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (147)
                      +....+|..+++.+++.+.+.    +..+||+.|++.++..++..+..+++.||+|++.
T Consensus       138 ~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~~~  196 (412)
T TIGR02332       138 MIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSPDKA  196 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhccCCCcccC
Confidence            999999999999999988652    1258999999988888776666677778877543

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.84  E-value=3.6e-20  Score=135.42  Aligned_cols=129  Identities=21%  Similarity=0.257  Sum_probs=114.3

Q ss_pred             CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhc-CCcchhHHHHH
Q psy4740           2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWV-PPTERGKIGSF   80 (147)
Q Consensus         2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~-~~~~r~~~~~~   80 (147)
                      ++++|+++||+|||+++..+.++..++++.++..  ++++.+++.|++.|++.+...+.....+.+.+ |+++|++++++
T Consensus        58 ~~~~G~l~D~~Grk~~l~~~~~~~~~~~~~~~~a--~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~  135 (495)
T PRK14995         58 VLPMGALGDRIGFKRLLMLGGTLFGLASLAAAFS--PTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGV  135 (495)
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            4678999999999999999999999999999998  89999999999999999988887777776765 67999999999


Q ss_pred             HHhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhccCCCC
Q psy4740          81 VFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPA  134 (147)
Q Consensus        81 ~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (147)
                      ......+|..++|.+++.+.++  .+||+.|++...+.++..+......|++++
T Consensus       136 ~~~~~~~g~~~gp~lgg~l~~~--~gwr~~f~i~~~~~~~~~~l~~~~l~~~~~  187 (495)
T PRK14995        136 WAAVGSGGAAFGPLVGGILLEH--FYWGSVFLINVPIVLVVMGLTARYVPRQAG  187 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcc--CChHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence            9999999999999999999988  799999999888877766666666666543

>PRK03545 putative arabinose transporter; Provisional

Probab=99.84  E-value=3.8e-20  Score=131.50  Aligned_cols=128  Identities=16%  Similarity=0.140  Sum_probs=114.4

Q ss_pred             CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHH
Q psy4740           2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFV   81 (147)
Q Consensus         2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~   81 (147)
                      +++.|.+.||+|||+++..+.++.++++..+.+.  ++++.+++.|++.|++.+...+...+++.|++|+++|++++++.
T Consensus        61 ~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~  138 (390)
T PRK03545         61 SLPLMLLTSNVERRKLLIGLFVLFIASHVLSALA--WNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLL  138 (390)
T ss_pred             HHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHH
Confidence            5678999999999999999999999999999888  89999999999999999888888999999999999999999999


Q ss_pred             HhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhccCCC
Q psy4740          82 FAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDP  133 (147)
Q Consensus        82 ~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (147)
                      ....++|..++|.+++.+.+.  .+||+.|++.+++.++..+......|+.+
T Consensus       139 ~~~~~~g~~ig~~l~~~l~~~--~gw~~~f~~~~~~~~l~~~~~~~~~~~~~  188 (390)
T PRK03545        139 ATGTALAMVLGLPLGRVIGQY--LGWRTTFLAIGGGALITLLLLIKLLPLLP  188 (390)
T ss_pred             HHHHHHHHHHHhhHHHHHHHH--hcHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            999999999999999998887  79999999998887766555555555543

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.84  E-value=7.2e-20  Score=129.37  Aligned_cols=130  Identities=15%  Similarity=0.072  Sum_probs=105.4

Q ss_pred             CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHH
Q psy4740           2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFV   81 (147)
Q Consensus         2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~   81 (147)
                      +++.|+++||+|||+++.........+.......  +++..+++.|++.|++++. .......++|++|+++|++++++.
T Consensus        43 ~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~R~l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~  119 (368)
T TIGR00903        43 TIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDP--FNYEWLLACQLLAALGQPF-LLNAFAPAASQIREERRDLVISLL  119 (368)
T ss_pred             HHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHH
Confidence            5678999999999987765554444433322233  5889999999999999985 455666679999999999999999


Q ss_pred             HhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhccCCCCCC
Q psy4740          82 FAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPASH  136 (147)
Q Consensus        82 ~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (147)
                      +....+|..+++.++..+.+.  .+||+.|++.+++.++..+..++..||+|+++
T Consensus       120 ~~~~~lG~~l~~~~~~~l~~~--~gWr~~f~~~~~l~~~~~~~~~~~lp~~p~~~  172 (368)
T TIGR00903       120 SFAMYLGIIFALAAGLKIYTA--GGLQLLIIPIAAVAAAGIILVLAALPALPFQA  172 (368)
T ss_pred             HHHHHHHHHHHHHHHHHHHHc--cchHHHHHHHHHHHHHHHHHHHHHcCCCCCCC
Confidence            999999999999999999887  79999999988888777777777788876543

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.84  E-value=4.3e-20  Score=133.96  Aligned_cols=133  Identities=33%  Similarity=0.710  Sum_probs=115.4

Q ss_pred             CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHH
Q psy4740           2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFV   81 (147)
Q Consensus         2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~   81 (147)
                      +++.|+++||+|||+++..+.++..+..+++......++..+++.|++.|++.+...+....+++|++|+++|++.+++.
T Consensus        93 ~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  172 (465)
T TIGR00894        93 QIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMS  172 (465)
T ss_pred             HcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHHHHHHHH
Confidence            67899999999999999999998888887765442245778899999999999999999999999999999999999999


Q ss_pred             HhhhhhHHHHHHHHHHHHHhhcCC-ChhHHHHHHHHHHHHHHHHHHhhccCCCCCC
Q psy4740          82 FAGNQIGTVFSSFLSGFLLKYTDG-DWPEIFYLFGILGVLWFVAWCFLCYNDPASH  136 (147)
Q Consensus        82 ~~~~~~g~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (147)
                      ....++|..+++.+.+.+.+.  . +||+.|++.++..++..+..+...+|+|+.+
T Consensus       173 ~~~~~~g~~i~~~l~~~l~~~--~~gw~~~f~i~~~~~~~~~~~~~~~~~~~p~~~  226 (465)
T TIGR00894       173 TSGFQLGTFIFLPISGWLCES--WGGWPMIFYVFGIVGCAWSLLWFVFPADDPSIH  226 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHHhc--cCCCCeehhhhhHHHHHHHHHHHHHhcCCcccC
Confidence            999999999999999988876  4 8999999999888777676666666666543

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.84  E-value=3.5e-20  Score=130.57  Aligned_cols=129  Identities=31%  Similarity=0.571  Sum_probs=115.5

Q ss_pred             CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHH
Q psy4740           2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFV   81 (147)
Q Consensus         2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~   81 (147)
                      +++.|+++||+|||+++..+.++.+++...+...  ++++.+++.|++.|++.+...+....++.|++|+++|++.+++.
T Consensus        46 ~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  123 (399)
T TIGR00893        46 QFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFA--GAYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIF  123 (399)
T ss_pred             HHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHH--cCHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHH
Confidence            4678999999999999999999999999988888  79999999999999999999999999999999999999999999


Q ss_pred             HhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhccCCCC
Q psy4740          82 FAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPA  134 (147)
Q Consensus        82 ~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (147)
                      ....++|..+++.+.+.+.+.  .+|++.|++.++..++..+...+..+|+++
T Consensus       124 ~~~~~~g~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (399)
T TIGR00893       124 NSAQGLGGIIGGPLVGWILIH--FSWQWAFIIEGVLGIIWGVLWLKFIPDPPQ  174 (399)
T ss_pred             HHhchHHHHHHHHHHHHHHHh--CCchHHHHHHHHHHHHHHHHhhheecCCCC
Confidence            999999999999999988887  689999999888877766666656666544

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.84  E-value=7.2e-20  Score=131.15  Aligned_cols=128  Identities=16%  Similarity=0.214  Sum_probs=112.3

Q ss_pred             CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHH
Q psy4740           2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFV   81 (147)
Q Consensus         2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~   81 (147)
                      ++++|.++||+|||+++..+.++..++...+...  ++++.+++.|++.|++.+...+.....+.|.+|+++|++.+++.
T Consensus        68 ~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a--~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (413)
T PRK15403         68 QWLLGPLSDRIGRRPVLITGALIFTLACAATLFT--TSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAII  145 (413)
T ss_pred             HHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            5789999999999999999999999999988888  89999999999999988766666677889999999999999999


Q ss_pred             HhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhccCCC
Q psy4740          82 FAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDP  133 (147)
Q Consensus        82 ~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (147)
                      .....++..++|.+++.+.++  .+||+.|++.++..++..+...+..||++
T Consensus       146 ~~~~~~~~~~g~~lg~~l~~~--~gw~~~f~~~~~~~~i~~~~~~~~lp~~~  195 (413)
T PRK15403        146 TSIVLVAPIIGPLSGAALMHF--VHWKVLFAIIAVMGLIAFVGLLLAMPETV  195 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence            999999999999999998887  79999999988887776655555566654

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.84  E-value=2.8e-20  Score=135.80  Aligned_cols=130  Identities=22%  Similarity=0.356  Sum_probs=105.8

Q ss_pred             CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHH--------HHHHHHHHHhhccccCcccHHHHhhhhcCCcc
Q psy4740           2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSAN--------WLIALRFFEGLGEGTTFPALNTLLAQWVPPTE   73 (147)
Q Consensus         2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~   73 (147)
                      +++.|+++||+|||+++.++.++.++++++++++  +++.        .+++.|++.|++.|..++....+++|++|+++
T Consensus        74 ~~~~G~l~Dr~Grr~~l~~~~~l~~i~~~~~a~~--~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~  151 (490)
T PRK10642         74 GLFFGMLGDKYGRQKILAITIVIMSISTFCIGLI--PSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRK  151 (490)
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhc--ccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCC
Confidence            5788999999999999999999999999999998  7765        37899999999999999999999999999999


Q ss_pred             hhHHHHHHHhhhhhHHHHHHHHHHHHHh------hcCCChhHHHHHHHHHHHHHHHHHHhhccCCCC
Q psy4740          74 RGKIGSFVFAGNQIGTVFSSFLSGFLLK------YTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPA  134 (147)
Q Consensus        74 r~~~~~~~~~~~~~g~~~~~~~~~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (147)
                      |++..++......+|..+++.+...+..      ....+||+.|++.+++.++ .+......||+|+
T Consensus       152 Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~-~~~~~~~~~esp~  217 (490)
T PRK10642        152 RGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGII-GLYLRHALEETPA  217 (490)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHHH-HHHHHHcCCCChh
Confidence            9999999888888888887766554432      1126999999997765554 3333445566543

>KOG2532|consensus

Probab=99.83  E-value=3.1e-20  Score=134.03  Aligned_cols=141  Identities=43%  Similarity=0.891  Sum_probs=128.4

Q ss_pred             CCcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHH
Q psy4740           1 MHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSF   80 (147)
Q Consensus         1 ~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~   80 (147)
                      ++++.|+++||+|.|+++.++.++.++.+++.+.+...+++.+++.|+++|++++..+|....+.++|.|+++|++..++
T Consensus        89 ~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~~~pa~~~i~~~W~P~~Ers~~~ai  168 (466)
T KOG2532|consen   89 GQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGVLFPAIGSILAKWAPPNERSTFIAI  168 (466)
T ss_pred             HHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhHHHhhhhceeeeECCHHHHHHHHHH
Confidence            36789999999999999999999999999999888666777889999999999999999999999999999999999999


Q ss_pred             HHhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCChh
Q psy4740          81 VFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPASHPYISQR  142 (147)
Q Consensus        81 ~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (147)
                      ..++.++|.+++-.+++.+.+. ..||+..|++.+.+.++..+++.++..|+|++++...++
T Consensus       169 l~~g~q~g~v~~mp~sg~lc~s-~~GW~sifY~~g~~g~i~~~~w~~~~~d~P~~h~~is~~  229 (466)
T KOG2532|consen  169 LTAGSQLGTIITMPVSGLLCES-SLGWPSIFYVFGIVGLIWFILWFLFYSDSPSKHPNISEK  229 (466)
T ss_pred             HHHHHHHHHHHHHHhHHHHhcc-CCCCchHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCHH
Confidence            9999999999999999999887 369999999999999999999999999988876554433

>KOG1330|consensus

Probab=99.83  E-value=2.8e-22  Score=141.11  Aligned_cols=130  Identities=18%  Similarity=0.263  Sum_probs=120.9

Q ss_pred             CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHH
Q psy4740           2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFV   81 (147)
Q Consensus         2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~   81 (147)
                      +|+.|+++||+.||+++.+|..++.++.+..++.  ..++++.++|.+.|+|++...+..+++++|.+|.++|++.+++.
T Consensus        85 sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~fs--~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~if  162 (493)
T KOG1330|consen   85 SPLFGYLADRYNRKRVIAVGIFIWTLAVFASGFS--NHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIF  162 (493)
T ss_pred             HHHHHHHHhhcCcceEEeeHHHHHHHHHHHHHHH--HHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHh
Confidence            5789999999999999999999999999999999  88999999999999999999999999999999999999999999


Q ss_pred             HhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhccCCCC
Q psy4740          82 FAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPA  134 (147)
Q Consensus        82 ~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (147)
                      +.+..+|.++|..++..+.+.+. .||+.|+..+++.++..++.+++.+|.++
T Consensus       163 y~~ipvGsglG~vvgs~va~~~~-~Wr~af~~~avl~vi~~~L~~~f~~eP~r  214 (493)
T KOG1330|consen  163 YFAIPVGSGLGYVVGSVVASLTF-WWRWAFRGSAVLGVIVGLLVFLFVREPER  214 (493)
T ss_pred             hhhcccccceeEEeeeeeccCcc-ceEEEEEeehHHHHHHHHHHHhhccCccc
Confidence            99999999999999998888753 49999999999999988888888777543

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.83  E-value=1.1e-19  Score=129.58  Aligned_cols=128  Identities=23%  Similarity=0.218  Sum_probs=112.5

Q ss_pred             CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHH
Q psy4740           2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFV   81 (147)
Q Consensus         2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~   81 (147)
                      +++.|+++||+|||+++..+.++.+++...+...  ++++.+++.|++.|++.+...+....++.|++|+++|+++.++.
T Consensus        72 ~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~  149 (394)
T PRK10213         72 SLFITQTIQATDRRYVVILFAVLLTLSCLLVSFA--NSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVI  149 (394)
T ss_pred             HHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHH--ChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHH
Confidence            5678999999999999999999999999888887  89999999999999999999999999999999999999999999


Q ss_pred             HhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhccCCC
Q psy4740          82 FAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDP  133 (147)
Q Consensus        82 ~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (147)
                      ....++|..++|.+++.+.+.  .+||+.|++.+++.++..+......||.+
T Consensus       150 ~~~~~~g~~ig~~l~~~l~~~--~gw~~~f~~~~~l~~~~~l~~~~~~p~~~  199 (394)
T PRK10213        150 FGAVSIALVIAAPLGSFLGEL--IGWRNVFNAAAVMGVLCIFWIIKSLPSLP  199 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHhh--cCHHHHHHHHHHHHHHHHHHHHHHCCCCC
Confidence            999999999999999999988  79999999987766654444333345543

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.82  E-value=2e-19  Score=129.52  Aligned_cols=128  Identities=20%  Similarity=0.377  Sum_probs=113.1

Q ss_pred             CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHH
Q psy4740           2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFV   81 (147)
Q Consensus         2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~   81 (147)
                      +++.|++.||+|||+++.++.++..++.+++...  ++++.+++.|++.|++.+..++....++.|++|+++|++.+++.
T Consensus        75 ~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~  152 (434)
T PRK11663         75 KFVSGIVSDRSNARYFMGIGLIATGIINILFGFS--SSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIW  152 (434)
T ss_pred             HhhhhHHHhhcCCchhHHHHHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHH
Confidence            5789999999999999999999999999988887  88999999999999999998999999999999999999999999


Q ss_pred             HhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhccCCC
Q psy4740          82 FAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDP  133 (147)
Q Consensus        82 ~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (147)
                      +...++|..++|.+.+.+.+.  .+||+.|++.+++.++..+...+..+|+|
T Consensus       153 ~~~~~~g~~~~~~~~~~l~~~--~gw~~~f~~~~i~~~~~~~~~~~~~~~~p  202 (434)
T PRK11663        153 NTAHNVGGALIPLVVGAIALH--YGWRYGMMIAGIIAIVVGLFLCWRLRDKP  202 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHc--ccHHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence            999999999999999999887  79999999988776655554444555544

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.82  E-value=1.5e-19  Score=130.20  Aligned_cols=118  Identities=19%  Similarity=0.254  Sum_probs=99.5

Q ss_pred             CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccH--------HHHHHHHHHHhhccccCcccHHHHhhhhcCCcc
Q psy4740           2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSA--------NWLIALRFFEGLGEGTTFPALNTLLAQWVPPTE   73 (147)
Q Consensus         2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~   73 (147)
                      ++++|+++||+|||+++..+.++.++++..+++.  +++        ..+++.|++.|++.|..++...++++|++|+++
T Consensus        80 ~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~  157 (432)
T PRK10406         80 GWLFGRIADKHGRKKSMLISVCMMCFGSLVIACL--PGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGR  157 (432)
T ss_pred             HHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhhc--CCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCc
Confidence            5678999999999999999999999999998887  544        368899999999999999999999999999999


Q ss_pred             hhHHHHHHHhhhhhHHHHHHHHHHHHHhh------cCCChhHHHHHHHHHHHHH
Q psy4740          74 RGKIGSFVFAGNQIGTVFSSFLSGFLLKY------TDGDWPEIFYLFGILGVLW  121 (147)
Q Consensus        74 r~~~~~~~~~~~~~g~~~~~~~~~~l~~~------~~~~~~~~~~~~~~~~~~~  121 (147)
                      |++..+..+.....|..+++.+...+...      ...+||.+|++.+++.++.
T Consensus       158 rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~  211 (432)
T PRK10406        158 KGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVA  211 (432)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHH
Confidence            99999998888888888877765544321      1269999999887776553

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.82  E-value=3.2e-20  Score=129.75  Aligned_cols=131  Identities=24%  Similarity=0.462  Sum_probs=123.3

Q ss_pred             CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHH
Q psy4740           2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFV   81 (147)
Q Consensus         2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~   81 (147)
                      .++.|.++||.++|..+..++++.++.++++++.  ++...+.++.+++|..||..+|.+...+..++|+++||+..++.
T Consensus        81 Kf~~G~~sDr~npr~fm~~gLilsai~nil~Gfs--~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siW  158 (448)
T COG2271          81 KFVMGVLSDRSNPRYFMAFGLILSAIVNILFGFS--PSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIW  158 (448)
T ss_pred             HHHhhhhcccCCCceeehHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEe
Confidence            4678999999999999999999999999999999  89999999999999999999999999999999999999999999


Q ss_pred             HhhhhhHHHHHHHHH--HHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhccCCCCCC
Q psy4740          82 FAGNQIGTVFSSFLS--GFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPASH  136 (147)
Q Consensus        82 ~~~~~~g~~~~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (147)
                      +...|+|+.+.|.+.  +.+..+  .+||..|++.+++.++..+..++..+|+|++.
T Consensus       159 n~shNiGGal~~~~~~la~~~~~--~~w~~~f~~pgiiaiival~~~~~~rd~Pqs~  213 (448)
T COG2271         159 NTSHNIGGALAPLVALLAFFAFH--GGWRAAFYFPGIIAIIVALILLFLLRDRPQSE  213 (448)
T ss_pred             hhhhhcccchHHHHHHHHHHHhc--cchhHHHHHHHHHHHHHHHHHHHHhCCCcccc
Confidence            999999999999999  777777  69999999999999999999999999988754

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.82  E-value=1.8e-19  Score=126.40  Aligned_cols=125  Identities=26%  Similarity=0.319  Sum_probs=119.8

Q ss_pred             CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHH
Q psy4740           2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFV   81 (147)
Q Consensus         2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~   81 (147)
                      .++...+.||+.||++++....++.+++++++++  +|+..+++.|++.|+..|..++.......+..|+++|++++++.
T Consensus        65 ap~l~~lt~r~~Rr~lLl~~l~lFi~~n~l~alA--p~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv  142 (394)
T COG2814          65 APLLALLTGRLERRRLLLGLLALFIVSNLLSALA--PSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALV  142 (394)
T ss_pred             HHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHH
Confidence            4677889999999999999999999999999999  99999999999999999999999999999999999999999999


Q ss_pred             HhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhcc
Q psy4740          82 FAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCY  130 (147)
Q Consensus        82 ~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (147)
                      ..+..++..+|..++.++-+.  .|||..|+..+.+.++..+..+...|
T Consensus       143 ~~G~tlA~v~GvPLGt~ig~~--~GWR~~F~~ia~l~ll~~~~~~~~lP  189 (394)
T COG2814         143 FTGLTLATVLGVPLGTFLGQL--FGWRATFLAIAVLALLALLLLWKLLP  189 (394)
T ss_pred             HHHHHHHHHHhccHHHHHHHH--hhHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            999999999999999999999  89999999999999998888888888

>PRK09952 shikimate transporter; Provisional

Probab=99.82  E-value=2.1e-19  Score=129.64  Aligned_cols=117  Identities=21%  Similarity=0.268  Sum_probs=100.4

Q ss_pred             CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHH--------HHHHHHHHHhhccccCcccHHHHhhhhcCCcc
Q psy4740           2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSAN--------WLIALRFFEGLGEGTTFPALNTLLAQWVPPTE   73 (147)
Q Consensus         2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~   73 (147)
                      +++.|+++||+|||+++..+.++.++++.++++.  +++.        .+++.|++.|++.+..++....+++|++|+++
T Consensus        81 ~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~  158 (438)
T PRK09952         81 GVVFGHFGDRLGRKRMLMLTVWMMGIATALIGLL--PSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNK  158 (438)
T ss_pred             HHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhcC--CcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCC
Confidence            3567999999999999999999999999999988  7765        58889999999999999999999999999999


Q ss_pred             hhHHHHHHHhhhhhHHHHHHHHHHHHHhh------cCCChhHHHHHHHHHHHH
Q psy4740          74 RGKIGSFVFAGNQIGTVFSSFLSGFLLKY------TDGDWPEIFYLFGILGVL  120 (147)
Q Consensus        74 r~~~~~~~~~~~~~g~~~~~~~~~~l~~~------~~~~~~~~~~~~~~~~~~  120 (147)
                      |++..+..+....+|..++..+...+...      ...+||..|++.+++.++
T Consensus       159 rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~  211 (438)
T PRK09952        159 KAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLI  211 (438)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHH
Confidence            99999999988889988887776665432      126999999988776544

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.82  E-value=9.2e-20  Score=127.16  Aligned_cols=126  Identities=33%  Similarity=0.588  Sum_probs=109.2

Q ss_pred             CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHH
Q psy4740           2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFV   81 (147)
Q Consensus         2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~   81 (147)
                      +++.|+++||+|||+++..+.++.+++.....+.  ++.+.+++.|++.|++.+...+....++.|++|+++|++.++..
T Consensus        49 ~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  126 (352)
T PF07690_consen   49 SPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFA--SNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGIL  126 (352)
T ss_dssp             HHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHH
T ss_pred             HHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhh--hhHHHHhhhccccccccccccccccccccccchhhhhhhccccc
Confidence            4678999999999999999999999986666655  66778999999999999999999999999999999999999999


Q ss_pred             HhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhccC
Q psy4740          82 FAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYN  131 (147)
Q Consensus        82 ~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (147)
                      +...++|..++|.+++.+.+.  .+||+.|++.+++.++..++...+.++
T Consensus       127 ~~~~~~g~~~g~~l~~~l~~~--~~~~~~~~~~~~~~~~~~il~~~~~~~  174 (352)
T PF07690_consen  127 SAGFSLGSILGPLLGGFLISY--FGWRWAFLISAILSLIAAILFILFLPE  174 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHCCCH--CHHCCHHHHHHHHHHHHHHHHHCCC--
T ss_pred             cchhhhhhhcccchhhhhhhc--cccccccccccchhhhhhhhHhhhhhh
Confidence            999999999999999999877  689999999999988876654444444

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.81  E-value=2e-19  Score=125.89  Aligned_cols=125  Identities=14%  Similarity=0.102  Sum_probs=107.5

Q ss_pred             CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcc---cccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHH
Q psy4740           2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAA---RQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIG   78 (147)
Q Consensus         2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~   78 (147)
                      +++.|+++||+|||+++..+.++..++........   ..+++.+++.|++.|++.+...+...+++.|++|+++|++..
T Consensus        51 ~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (365)
T TIGR00900        51 SPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQAN  130 (365)
T ss_pred             HHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence            57889999999999999999888888777776651   118899999999999999999999999999999999999999


Q ss_pred             HHHHhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhh
Q psy4740          79 SFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFL  128 (147)
Q Consensus        79 ~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (147)
                      ++.+...++|..++|.+++.+.+.  .+|++.|++.++..++..+.....
T Consensus       131 ~~~~~~~~~g~~~g~~l~~~l~~~--~g~~~~~~~~~~~~~~~~~~~~~~  178 (365)
T TIGR00900       131 SLSQAVRSLFYIVGPGIGGLMYAT--LGIKWAIWVDAVGFAISALLIVSV  178 (365)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHHHHhc
Confidence            999999999999999999999888  799999998877666544444333

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.81  E-value=5.5e-19  Score=124.82  Aligned_cols=129  Identities=20%  Similarity=0.373  Sum_probs=114.5

Q ss_pred             CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHH
Q psy4740           2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFV   81 (147)
Q Consensus         2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~   81 (147)
                      +++.|+++||+|||+.+..+.++..++...+...  ++++.+++.|++.|++.+...+....++.|.+|+++|++..++.
T Consensus        57 ~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (385)
T TIGR00710        57 QLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALS--NNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSIL  134 (385)
T ss_pred             HHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHH--ccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence            5688999999999999999999999999888887  88899999999999999999999999999999999999999999


Q ss_pred             HhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhccCCCC
Q psy4740          82 FAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPA  134 (147)
Q Consensus        82 ~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (147)
                      +....+|..++|.+++.+.+.  .+|+..|++.+...++..+...+..||+++
T Consensus       135 ~~~~~~g~~~g~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (385)
T TIGR00710       135 MPVLALAPAVAPLLGGYILVW--LSWHAIFAFLSLAGILLSALIFFILPETLP  185 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH--cCHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence            999999999999999998887  799999998888777666665555665443

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.81  E-value=5.2e-19  Score=125.53  Aligned_cols=128  Identities=16%  Similarity=0.230  Sum_probs=109.8

Q ss_pred             CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHH
Q psy4740           2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFV   81 (147)
Q Consensus         2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~   81 (147)
                      +++.|+++||+|||+++.++.++.+++...+.+.  ++++.+++.|++.|++.+..++....++.|++|+++|+++.++.
T Consensus        64 ~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  141 (405)
T TIGR00891        64 ALMFGLWGDRYGRRLPMVTSIVLFSAGTLACGFA--PGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLL  141 (405)
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHH
Confidence            5789999999999999999999999999888887  88999999999999999999999999999999999999999999


Q ss_pred             HhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhccCC
Q psy4740          82 FAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYND  132 (147)
Q Consensus        82 ~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (147)
                      +....+|..+++.+.+.+.+..+.+||+.|++.++..++. +......||+
T Consensus       142 ~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~~~~~~~~~~-~~~~~~~~~~  191 (405)
T TIGR00891       142 ISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFA-LWLRKNIPEA  191 (405)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHH-HHHHHhCCCC
Confidence            9999999999999999888773335999998866555443 3333344554

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.81  E-value=4.2e-19  Score=125.95  Aligned_cols=128  Identities=16%  Similarity=0.198  Sum_probs=113.4

Q ss_pred             CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHH
Q psy4740           2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFV   81 (147)
Q Consensus         2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~   81 (147)
                      +++.|+++||+|||+++..+..+.+++.+++...  ++++.+++.|++.|++.+...+.....+.|++|+++|++.++..
T Consensus        55 ~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~~--~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (382)
T PRK10091         55 APIIALFSSRYSLKHILLFLVALCVIGNAMFTLS--SSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGM  132 (382)
T ss_pred             HHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHh--CcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHH
Confidence            5789999999999999999999999999999888  89999999999999999988888888999999999999999999


Q ss_pred             HhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhccCCC
Q psy4740          82 FAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDP  133 (147)
Q Consensus        82 ~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (147)
                      .....++..++|.+++.+.+.  .+||+.|++.++..++..+......||.+
T Consensus       133 ~~~~~~g~~~g~~l~~~l~~~--~gwr~~f~~~~~~~~~~~~~~~~~lp~~~  182 (382)
T PRK10091        133 VSGMTVANLLGIPLGTYLSQE--FSWRYTFLLIAVFNIAVLASIYFWVPDIR  182 (382)
T ss_pred             HHHHHHHHHHhccHHHHHhhh--ccHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            999999999999999998887  79999999988877665555555566643

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.81  E-value=2.7e-19  Score=125.74  Aligned_cols=129  Identities=20%  Similarity=0.330  Sum_probs=112.4

Q ss_pred             CCcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHH
Q psy4740           1 MHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSF   80 (147)
Q Consensus         1 ~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~   80 (147)
                      ++++.|+++||+|||+.+..+.++..++.+++...  ++++.+++.|++.|++.+...+....++.|++|+++|++..++
T Consensus        46 ~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  123 (379)
T TIGR00881        46 SKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFS--TSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSF  123 (379)
T ss_pred             hhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHh--hhHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEee
Confidence            36789999999999999999999999999998888  8899999999999999999999999999999999999999999


Q ss_pred             HHhhhhhHHHHHH-HHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhccCCC
Q psy4740          81 VFAGNQIGTVFSS-FLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDP  133 (147)
Q Consensus        81 ~~~~~~~g~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (147)
                      .+....+|..++| .++..+.+.  .+|++.|++.+.+.++..+...+..+|++
T Consensus       124 ~~~~~~~g~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (379)
T TIGR00881       124 WNCSHNVGGGLLPPLVLFGIAEL--YSWHWVFIVPGIIAIIVSLICFLLLRDSP  175 (379)
T ss_pred             hhccchhHHHHHHHHHHHHHHhc--CCchhHHHHHHHHHHHHHHHHheeeCCCc
Confidence            9999999999999 466666666  68999999888777666566565665544

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.80  E-value=4e-19  Score=130.11  Aligned_cols=132  Identities=20%  Similarity=0.300  Sum_probs=109.2

Q ss_pred             CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccc----cHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHH
Q psy4740           2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQ----SANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKI   77 (147)
Q Consensus         2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~   77 (147)
                      ++++|+++||+|||+++.++.++..++..++......    ++..+++.|++.|++.+...+....+++|++|+++|++.
T Consensus        73 ~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~  152 (502)
T TIGR00887        73 QLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAM  152 (502)
T ss_pred             HHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHH
Confidence            5678999999999999999999999988887766211    267899999999999999999999999999999999999


Q ss_pred             HHHHHhhhhhHHHHHHHHHHHHHhh---------------------cCCChhHHHHHHHHHHHHHHHHHHhhccCCCC
Q psy4740          78 GSFVFAGNQIGTVFSSFLSGFLLKY---------------------TDGDWPEIFYLFGILGVLWFVAWCFLCYNDPA  134 (147)
Q Consensus        78 ~~~~~~~~~~g~~~~~~~~~~l~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (147)
                      +++.+....+|..+++.+...+...                     .+++||+++.+.+++.++. .+..++.||+|+
T Consensus       153 ~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~-~~~~~~lpESpr  229 (502)
T TIGR00887       153 MAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLA-LYFRLTIPETPR  229 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHH-HHHHHhCCCCHH
Confidence            9999999999999999888765431                     1247999998887777654 444566788765

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.80  E-value=3.3e-19  Score=129.63  Aligned_cols=128  Identities=22%  Similarity=0.362  Sum_probs=115.1

Q ss_pred             CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHH
Q psy4740           2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFV   81 (147)
Q Consensus         2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~   81 (147)
                      .++.|+++||+|||+.+..+.++..++..++...  +++..+++.|++.|++.+...+....++.|.+|+++|+++.++.
T Consensus        54 ~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~  131 (485)
T TIGR00711        54 IPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGVA--PNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIW  131 (485)
T ss_pred             HHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHhCc--CCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHH
Confidence            4678999999999999999999999999999888  89999999999999999999999999999999999999999999


Q ss_pred             HhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhccCCC
Q psy4740          82 FAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDP  133 (147)
Q Consensus        82 ~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (147)
                      .....+|..++|.+++.+.++  .+||+.|++.+.+.++..+...+..|+++
T Consensus       132 ~~~~~~g~~~g~~~~~~l~~~--~~w~~~f~~~~~~~~~~~~~~~~~~~~~~  181 (485)
T TIGR00711       132 GLTVLVAPALGPTLGGWIIEN--YHWRWIFLINVPIGIIVVVVAFFILPRDK  181 (485)
T ss_pred             HHHHHHHhhhhhccHhHhccC--cCceehhhhhhHHHHHHHHHHHHHcCCcc
Confidence            999999999999999999887  79999999988877766666555555543

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.80  E-value=5.1e-19  Score=126.16  Aligned_cols=128  Identities=26%  Similarity=0.378  Sum_probs=111.8

Q ss_pred             CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHH
Q psy4740           2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFV   81 (147)
Q Consensus         2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~   81 (147)
                      +++.|+++||+|||+++..+.++..+..+.+...  ++++.+++.|++.|++.+...+....++.|++|+++|++.+++.
T Consensus        67 ~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  144 (406)
T PRK11551         67 ALLGGRLADRIGRKRILIVSVALFGLFSLATAQA--WDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLM  144 (406)
T ss_pred             HHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence            5688999999999999999998888888888777  88999999999999999999999999999999999999999999


Q ss_pred             HhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhccCCC
Q psy4740          82 FAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDP  133 (147)
Q Consensus        82 ~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (147)
                      +....+|..+++.++..+.+.  .+|+..|++.++..++..+......||++
T Consensus       145 ~~~~~~g~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  194 (406)
T PRK11551        145 YCGVPFGGALASVIGVLAAGD--AAWRHIFYVGGVGPLLLVPLLMRWLPESR  194 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHccc--cCHHHHHHHHHHHHHHHHHHHHHhCCCCh
Confidence            999999999999998877766  68999999887766665555555566654

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.79  E-value=1.9e-18  Score=122.84  Aligned_cols=128  Identities=22%  Similarity=0.342  Sum_probs=112.1

Q ss_pred             CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHH
Q psy4740           2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFV   81 (147)
Q Consensus         2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~   81 (147)
                      +++.|+++||+|||+.+..+.+...++...+...  ++.+.+++.|++.|++.+...+....++.|.+|+++|++..+..
T Consensus        55 ~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~--~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~  132 (392)
T PRK10473         55 MLFAGKIADRSGRKPVAIPGAALFIIASLLCSLA--ETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLL  132 (392)
T ss_pred             HHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHh--CcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence            5789999999999999999999999998888777  78888899999999999988888999999999999999999999


Q ss_pred             HhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhccCCC
Q psy4740          82 FAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDP  133 (147)
Q Consensus        82 ~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (147)
                      +....++..++|.+++.+.+.  .+|++.|++.+...++..+......||++
T Consensus       133 ~~~~~i~~~~~~~i~~~l~~~--~g~~~~~~~~~~~~~i~~~~~~~~~~~~~  182 (392)
T PRK10473        133 NGITCIIPVLAPVLGHLIMLK--FPWQSLFYTMAAMGILVLLLSLFILKETR  182 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHHhC--cChHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence            999999999999999888776  69999999988877766666555556543

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.79  E-value=1.6e-18  Score=122.49  Aligned_cols=128  Identities=25%  Similarity=0.404  Sum_probs=113.6

Q ss_pred             CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHH
Q psy4740           2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFV   81 (147)
Q Consensus         2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~   81 (147)
                      +++.|+++||+|||+++..+.++.+++...+...  ++++.+++.|++.|++.+...+....++.|.+|+++|++.+++.
T Consensus        43 ~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (377)
T PRK11102         43 QLFYGPMADSFGRKPVILGGTLVFALAAVACALA--QTIDQLIYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFV  120 (377)
T ss_pred             HHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHH--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            5688999999999999999999999999988887  88899999999999999988888999999999999999999999


Q ss_pred             HhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhccCCC
Q psy4740          82 FAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDP  133 (147)
Q Consensus        82 ~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (147)
                      +....+|..++|.+++.+.+.  .+|++.|++.+.+.++..+...+..||++
T Consensus       121 ~~~~~~g~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (377)
T PRK11102        121 TLVMTIAPLLAPIIGGWLLVW--FSWHAIFWVLALAAILAAALVFFFIPETL  170 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH--cChHHHHHHHHHHHHHHHHHHHHhCCccC
Confidence            999999999999999999887  79999999888877766555555566543

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.79  E-value=1.8e-18  Score=121.52  Aligned_cols=126  Identities=24%  Similarity=0.305  Sum_probs=107.7

Q ss_pred             CCcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHH
Q psy4740           1 MHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSF   80 (147)
Q Consensus         1 ~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~   80 (147)
                      ++++.|+++||+|||+++..+.++.+++...+...  ++++.+++.|++.|++.+..++.....+.|++| ++|+++.+.
T Consensus        54 ~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  130 (377)
T TIGR00890        54 SMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIA--DSLAALYLTYGLASAGVGIAYGIALNTAVKWFP-DKRGLASGI  130 (377)
T ss_pred             HhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHH--HHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcC-cccHHHHHH
Confidence            36889999999999999999999999999998888  899999999999999999888888888888887 679999999


Q ss_pred             HHhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhccC
Q psy4740          81 VFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYN  131 (147)
Q Consensus        81 ~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (147)
                      .....++|..+++.+.+.+.+.  .+||+.|++.+++.++..+...+..++
T Consensus       131 ~~~~~~~g~~~~~~~~~~~~~~--~~~~~~f~~~~~~~~~~~~~~~~~~~~  179 (377)
T TIGR00890       131 IIGGYGLGSFILSPLITSVINL--EGVPAAFIYMGIIFLLVIVLGAFLIGY  179 (377)
T ss_pred             HHHhcchhHhHHHHHHHHHHhc--ccHHHHHHHHHHHHHHHHHHHHHheec
Confidence            9999999988777777666665  689999999888877766665555544

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.79  E-value=8.6e-19  Score=127.38  Aligned_cols=133  Identities=20%  Similarity=0.313  Sum_probs=106.8

Q ss_pred             CCcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcc----------cccHHHHHHHHHHHhhccccCcccHHHHhhhhcC
Q psy4740           1 MHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAA----------RQSANWLIALRFFEGLGEGTTFPALNTLLAQWVP   70 (147)
Q Consensus         1 ~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~   70 (147)
                      +++++|+++||+|||+++..+.++..++...++...          ...+..+++.|++.|++.+...+....+++|++|
T Consensus        71 ~~~~~G~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~  150 (479)
T PRK10077         71 GGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAP  150 (479)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCC
Confidence            357899999999999999999999888877665420          1224567899999999999999999999999999


Q ss_pred             CcchhHHHHHHHhhhhhHHHHHHHHHHHHHhh------cCCChhHHHHHHHHHHHHHHHHHHhhccCCCC
Q psy4740          71 PTERGKIGSFVFAGNQIGTVFSSFLSGFLLKY------TDGDWPEIFYLFGILGVLWFVAWCFLCYNDPA  134 (147)
Q Consensus        71 ~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (147)
                      +++|++++++.+....+|..+++.++..+...      ...+||+.|++.+++.++..+. .++.||+|+
T Consensus       151 ~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~-~~~l~~s~~  219 (479)
T PRK10077        151 AHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLML-LYFVPETPR  219 (479)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHH-HHcCCCCcH
Confidence            99999999999999999999988776655421      1258999999988777765443 556677653

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.78  E-value=5.9e-18  Score=120.58  Aligned_cols=117  Identities=13%  Similarity=0.254  Sum_probs=103.5

Q ss_pred             CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHH
Q psy4740           2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFV   81 (147)
Q Consensus         2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~   81 (147)
                      +++.|+++||+|||+++..+..+.+++...++++  ++++.+++.|++.|++.+...+.....+.|++| ++|++.++.+
T Consensus        61 ~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a--~~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~  137 (393)
T PRK09705         61 ALAGSWLHQHVSERRSVAISLLLIAVGALMRELY--PQSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLW  137 (393)
T ss_pred             hhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHC--cchHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHH
Confidence            6789999999999999999999999999999998  899999999999999999999999999999997 7899999999


Q ss_pred             HhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHH
Q psy4740          82 FAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWF  122 (147)
Q Consensus        82 ~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  122 (147)
                      ......|..+++.+++.+.++. .+||..+...++..++..
T Consensus       138 ~~~~~~g~~~g~~~~~~l~~~~-~~w~~~~~~~~~~~~~~~  177 (393)
T PRK09705        138 SAALMGGGGLGAAITPWLVQHS-ETWYQTLAWWALPAVVAL  177 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHH
Confidence            9999999999999999887762 279988776655554433

>TIGR00898 2A0119 cation transport protein

Probab=99.78  E-value=1.6e-18  Score=126.86  Aligned_cols=126  Identities=22%  Similarity=0.415  Sum_probs=110.4

Q ss_pred             CCcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHH
Q psy4740           1 MHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSF   80 (147)
Q Consensus         1 ~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~   80 (147)
                      ++++.|+++||+|||+++.++.++..++.+...+.  ++++.+++.|++.|++.+...+....++.|++|+++|++..++
T Consensus       143 g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~  220 (505)
T TIGR00898       143 GSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFS--PNYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTL  220 (505)
T ss_pred             HHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHc--ccHHHHHHHHHHHHhhccchHHHHHHHhheecChhhhHHHHHH
Confidence            35789999999999999999999999999988888  8999999999999999999999999999999999999999999


Q ss_pred             HHhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhccCCCC
Q psy4740          81 VFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPA  134 (147)
Q Consensus        81 ~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (147)
                      ......+|..+++.++..+     .+||+.+++.+++.++..+.. ++.||+|+
T Consensus       221 ~~~~~~~g~~~~~~~~~~~-----~~wr~~~~~~~i~~~~~~~~~-~~~~esp~  268 (505)
T TIGR00898       221 IQVFFSLGLVLLPLVAYFI-----PDWRWLQLAVSLPTFLFFLLS-WFVPESPR  268 (505)
T ss_pred             HHHHHHHHHHHHHHHHHHh-----hHHHHHHHHHHHHHHHHHHHH-HhcCCChH
Confidence            9999999999998887665     249999999888877655554 56676653

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.78  E-value=7.8e-19  Score=127.55  Aligned_cols=134  Identities=20%  Similarity=0.208  Sum_probs=109.8

Q ss_pred             CCcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhc---ccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHH
Q psy4740           1 MHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFA---ARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKI   77 (147)
Q Consensus         1 ~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~   77 (147)
                      ++++.|+++||+|||+++..+.++.++..+..+..   ..++++.+++.|++.|++++...+....+++|++|+++|+++
T Consensus        80 ~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a  159 (467)
T PRK09556         80 GKTLVGYYADGKNTKQFLPFLLILSAICMLGFGASLGSGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRF  159 (467)
T ss_pred             HHhhhhhHhhccCccchHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeee
Confidence            36789999999999999988888777776655442   127889999999999999999999999999999999999999


Q ss_pred             HHHHHhhhhhHHHHHHHHHHHHHhhc-CCChhHHHHHHHHHHHHHHHHHHhhccCCCC
Q psy4740          78 GSFVFAGNQIGTVFSSFLSGFLLKYT-DGDWPEIFYLFGILGVLWFVAWCFLCYNDPA  134 (147)
Q Consensus        78 ~~~~~~~~~~g~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (147)
                      +++.....++|..+++.+...+.+.. ..+|+..|.+.+++.++..+..+++.+++|+
T Consensus       160 ~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~f~~~g~~~~~~~i~~~~~~~~~p~  217 (467)
T PRK09556        160 LGFWNISHNLGGAGAGGVALWGANYFFDGHVIGMFIFPSIIALIIGFIGLRYGSDSPE  217 (467)
T ss_pred             EEeeecccchhhhHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHHHHHHHhCCCChh
Confidence            99999999999999999887766642 2369998888887777666666666565554

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.77  E-value=2e-18  Score=123.80  Aligned_cols=113  Identities=23%  Similarity=0.339  Sum_probs=103.1

Q ss_pred             CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHH
Q psy4740           2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFV   81 (147)
Q Consensus         2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~   81 (147)
                      +++.|+++||+|||+++.++.+..+++.......  ++++.+++.|++.|++.+..++....++.|.+|+++|+++.++.
T Consensus        70 ~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~--~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~  147 (426)
T PRK12307         70 GALFGLLADKFGRKPLMMWSIVAYSVGTGLSGLA--SGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFL  147 (426)
T ss_pred             HHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHH
Confidence            5688999999999999999999999999988888  88999999999999999999999999999999999999999999


Q ss_pred             HhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHH
Q psy4740          82 FAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILG  118 (147)
Q Consensus        82 ~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  118 (147)
                      .....+|..+++.+.+.+.+.  .+||+.|++.....
T Consensus       148 ~~~~~lg~~~~~~l~~~l~~~--~~w~~~f~i~~~~~  182 (426)
T PRK12307        148 VSGFGIGNIIAAYFMPSFAEA--YGWRAAFFVGLLPV  182 (426)
T ss_pred             HHHHhHHHHHHHHHHHHHccc--CCHHHHHHHHHHHH
Confidence            999999999999988888776  69999998755443

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.77  E-value=1.3e-18  Score=131.42  Aligned_cols=130  Identities=18%  Similarity=0.318  Sum_probs=111.8

Q ss_pred             CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHH
Q psy4740           2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFV   81 (147)
Q Consensus         2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~   81 (147)
                      ++++|+++||+|||+.++++.++.+++.+++++.  ++++.+++.|++.|++.+...+....+++|++|+++|++.+++.
T Consensus       219 ~li~G~LsDR~GRR~~lii~lil~~i~~ll~afa--~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~  296 (742)
T TIGR01299       219 AFFWGGLADKLGRKQCLLICLSVNGFFAFFSSFV--QGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWL  296 (742)
T ss_pred             HHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
Confidence            5789999999999999999999999999888888  88999999999999999999999999999999999999999999


Q ss_pred             HhhhhhHHHHHHHHHHHHHhhcC-----------CChhHHHHHHHHHHHHHHHHHHhhccCCCC
Q psy4740          82 FAGNQIGTVFSSFLSGFLLKYTD-----------GDWPEIFYLFGILGVLWFVAWCFLCYNDPA  134 (147)
Q Consensus        82 ~~~~~~g~~~~~~~~~~l~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (147)
                      .....+|.++++.++..+....+           .+||+.+++.+++.++. ++..++.||+|+
T Consensus       297 ~~~~~iG~ila~~la~~il~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~-ll~~~~lPESPr  359 (742)
T TIGR01299       297 CMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFA-IGALTFMPESPR  359 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccchhccccccccccHHHHHHHHHHHHHHH-HHHHHHcCCCHH
Confidence            99999999999988776654311           36999988887776654 455566788764

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.77  E-value=6.8e-18  Score=120.55  Aligned_cols=128  Identities=18%  Similarity=0.222  Sum_probs=111.1

Q ss_pred             CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHH
Q psy4740           2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFV   81 (147)
Q Consensus         2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~   81 (147)
                      +++.|.++||+|||+++..+.....++.......  ++++.+++.|++.|++.+...+.....+.|.+|+++|.+..++.
T Consensus        65 ~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~--~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  142 (406)
T PRK15402         65 QWLLGPLSDRIGRRPVMLAGVAFFILTCLAILLA--QSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALM  142 (406)
T ss_pred             HHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHH--ccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHH
Confidence            4678999999999999999999999988888777  78889999999999999888888889999999999999999998


Q ss_pred             HhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhccCCC
Q psy4740          82 FAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDP  133 (147)
Q Consensus        82 ~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (147)
                      .....++..++|.+++.+.+.  .+||+.|++.++..++..+......||++
T Consensus       143 ~~~~~~~~~~g~~i~~~l~~~--~~w~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (406)
T PRK15402        143 ANVALLAPLLGPLVGAALIHV--LPWRGMFVLFAALAALSFFGLWRAMPETA  192 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHc--cCccHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            888888999999999998887  68999999888887766555555556554

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=99.77  E-value=1.1e-17  Score=102.27  Aligned_cols=125  Identities=29%  Similarity=0.482  Sum_probs=109.3

Q ss_pred             CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHH
Q psy4740           2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFV   81 (147)
Q Consensus         2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~   81 (147)
                      +++.|++.||+|||+.+..+.....++.+.....  ++++.+.+.+++.|++.+...+....++.|.+|+++|++..+..
T Consensus        15 ~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (141)
T TIGR00880        15 SPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALS--SNITVLIIARFLQGFGAAFALVAGAALIADIYPPEERGVALGLM   92 (141)
T ss_pred             HhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChhhhhHHHHHH
Confidence            5678999999999999999988888888877776  78888889999999999988899999999999999999999999


Q ss_pred             HhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhcc
Q psy4740          82 FAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCY  130 (147)
Q Consensus        82 ~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (147)
                      +....+|..++|.+.+.+.+.  .+|++.+++.+...++..+...+..|
T Consensus        93 ~~~~~~g~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (141)
T TIGR00880        93 SAGIALGPLLGPPLGGVLAQF--LGWRAPFLFLAILALAAFILLAFLLP  139 (141)
T ss_pred             HHhHHHHHHHhHHhHHHHhcc--cchHHHHHHHHHHHHHHHHHHhhcCC
Confidence            999999999999999999877  68999999888777766555555543

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.77  E-value=1.2e-17  Score=119.27  Aligned_cols=125  Identities=25%  Similarity=0.294  Sum_probs=109.5

Q ss_pred             CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHH
Q psy4740           2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFV   81 (147)
Q Consensus         2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~   81 (147)
                      +++.|+++||+|||+++..+.++.+++.+.+...  ++++.+++.|++.|++.+...+...+.+.|.+|+++|++++++.
T Consensus        63 ~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~--~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~  140 (400)
T PRK11646         63 GIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIA--HEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLL  140 (400)
T ss_pred             HhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            4678999999999999999999999999988877  78888999999999998888888899999999999999999999


Q ss_pred             HhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhccC
Q psy4740          82 FAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYN  131 (147)
Q Consensus        82 ~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (147)
                      +...++|..++|.+++.+. .  .+|++.|++.+...++..+...+..||
T Consensus       141 ~~~~~~g~~ig~~l~g~l~-~--~g~~~~f~~~~~~~~~~~i~~~~~~~~  187 (400)
T PRK11646        141 MMQDSAGAVIGALLGSWLL-Q--YDFRLVCATGAVLFVLAAAFNAWLLPA  187 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHH-H--hhHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence            9999999999999999998 4  489999998887766655444444554

>PRK15075 citrate-proton symporter; Provisional

Probab=99.76  E-value=7.5e-18  Score=121.42  Aligned_cols=114  Identities=22%  Similarity=0.341  Sum_probs=97.3

Q ss_pred             CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHH--------HHHHHHHHHhhccccCcccHHHHhhhhcCCcc
Q psy4740           2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSAN--------WLIALRFFEGLGEGTTFPALNTLLAQWVPPTE   73 (147)
Q Consensus         2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~   73 (147)
                      +++.|+++||+|||+.+..+..+..+++..+++.  +++.        .+++.|++.|++.+...+....+++|++|+++
T Consensus        73 ~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~  150 (434)
T PRK15075         73 AIVLGAYIDRVGRRKGLIVTLSIMASGTLLIAFV--PGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGR  150 (434)
T ss_pred             HHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhC--CcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCccc
Confidence            4577999999999999999999999999999888  6655        46889999999999999989999999999999


Q ss_pred             hhHHHHHHHhhhhhHHHHHHHHHHHHHhh------cCCChhHHHHHHHHH
Q psy4740          74 RGKIGSFVFAGNQIGTVFSSFLSGFLLKY------TDGDWPEIFYLFGIL  117 (147)
Q Consensus        74 r~~~~~~~~~~~~~g~~~~~~~~~~l~~~------~~~~~~~~~~~~~~~  117 (147)
                      |++.+++.....++|..+++.+++.+...      ...+||+.|++....
T Consensus       151 rg~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~~  200 (434)
T PRK15075        151 KGFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIGCLI  200 (434)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHH
Confidence            99999999988888888888887765321      126999999875443

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.76  E-value=1.7e-17  Score=120.11  Aligned_cols=132  Identities=18%  Similarity=0.270  Sum_probs=105.3

Q ss_pred             CCcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcc--cccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHH
Q psy4740           1 MHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAA--RQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIG   78 (147)
Q Consensus         1 ~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~   78 (147)
                      ++++.|+++||+|||+++..+.++.++..+.+.+..  ..++..+++.|++.|++.+..++.....+.|++|+++|++++
T Consensus        79 ~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~  158 (452)
T PRK11273         79 SKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIV  158 (452)
T ss_pred             HHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHH
Confidence            367899999999999999999999888888776642  136778889999999999988888888899999999999999


Q ss_pred             HHHHhhhhhHHH-HHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhccCCCC
Q psy4740          79 SFVFAGNQIGTV-FSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPA  134 (147)
Q Consensus        79 ~~~~~~~~~g~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (147)
                      ++.+...++|.. .+|+....+...  .+||+.|++.+.+.++..+...++.||+|+
T Consensus       159 ~~~~~~~~~g~~~~~~l~~~~~~~~--~gw~~~f~i~~~~~~~~~~l~~~~~~~~~~  213 (452)
T PRK11273        159 SVWNCAHNVGGGLPPLLFLLGMAWF--NDWHAALYMPAFAAILVALFAFAMMRDTPQ  213 (452)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHHHHHHccCCHh
Confidence            999999888874 455544444333  489999999888777665666666666543

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.76  E-value=2.5e-17  Score=120.25  Aligned_cols=115  Identities=18%  Similarity=0.232  Sum_probs=99.8

Q ss_pred             Ccchhhhhhh-hcchHHHHHHHHHHHHHHHHhhhccccc-HHHHHHHHHHHhhccccCcccHHHHhhhhcCCc--chhHH
Q psy4740           2 HIPGGLLAQK-FGGKHTLGFGILSTAIFTLLTPFAARQS-ANWLIALRFFEGLGEGTTFPALNTLLAQWVPPT--ERGKI   77 (147)
Q Consensus         2 ~~~~g~l~d~-~gr~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~--~r~~~   77 (147)
                      .+++|+++|| +|||+++.++.++..++.+.+...  .+ ...+++.+++.|++.|...+...+++.|.+|++  +|+.+
T Consensus        67 ~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~--~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~  144 (489)
T PRK10207         67 ISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMS--LLKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGA  144 (489)
T ss_pred             HhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHh--ccchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcc
Confidence            3578999999 999999999999999999998876  43 334557899999999999999999999999887  45778


Q ss_pred             HHHHHhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHH
Q psy4740          78 GSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVL  120 (147)
Q Consensus        78 ~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  120 (147)
                      +++.+...++|..++|.+++.+.++  .||++.|++.++...+
T Consensus       145 ~~~~~~~~nig~~~g~~l~g~l~~~--~gw~~~F~i~~i~~~~  185 (489)
T PRK10207        145 FTLFYMSINIGSLISLSLAPVIADK--FGYSVTYNLCGAGLII  185 (489)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHh--hChHHHHHHHHHHHHH
Confidence            9999999999999999999999988  7999999986554433

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.76  E-value=1.3e-17  Score=118.71  Aligned_cols=129  Identities=20%  Similarity=0.248  Sum_probs=110.4

Q ss_pred             CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHH
Q psy4740           2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFV   81 (147)
Q Consensus         2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~   81 (147)
                      +++.|+++||+|||+.+..+.....++.+.+...  ++++.+++.|++.|++.+...+....+..|.+++++|++..+..
T Consensus        60 ~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (394)
T PRK11652         60 QLFYGPLSDRVGRRPVILVGMSIFILGTLVALFA--HSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLL  137 (394)
T ss_pred             HHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHH--ccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            5688999999999999999999999988888777  88999999999999988877777778889999999999999999


Q ss_pred             HhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhccCCCC
Q psy4740          82 FAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPA  134 (147)
Q Consensus        82 ~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (147)
                      +....++..++|.+++.+.+.  .+||+.|++.++..++..+...+..||+++
T Consensus       138 ~~~~~~~~~~g~~i~~~l~~~--~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~  188 (394)
T PRK11652        138 NMGILVSPLLAPLIGGLLTTL--FGWRACYLFLLLLGAGVTFSMARWMPETRP  188 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHhc--cChHHHHHHHHHHHHHHHHHHHHhCCccCc
Confidence            999999999999999998887  689999999877766555555555566443

>PRK03699 putative transporter; Provisional

Probab=99.76  E-value=2.7e-17  Score=117.21  Aligned_cols=121  Identities=17%  Similarity=0.178  Sum_probs=104.9

Q ss_pred             CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHH
Q psy4740           2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFV   81 (147)
Q Consensus         2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~   81 (147)
                      +++.|++.||+|||+++..+.++.+++..++...  ++++.+++.|++.|++.+...+.....+.|.+|+++|+..++..
T Consensus        59 ~~~~g~l~dr~g~r~~~~~~~~~~~i~~~l~~~~--~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~  136 (394)
T PRK03699         59 IFLNAWLMEIIPLKRQLIFGFALMILAVAGLMFS--HSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFT  136 (394)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc--chHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHH
Confidence            4678999999999999999999999999888887  88889999999999999988888999999999999999999998


Q ss_pred             HhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHH
Q psy4740          82 FAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAW  125 (147)
Q Consensus        82 ~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (147)
                      +....++..++|.+.+.+.+.. .+||+.|.+.+.+.++..+..
T Consensus       137 ~~~~~~g~~~~~~~~~~l~~~~-~gw~~~f~~~~~~~~~~~~~~  179 (394)
T PRK03699        137 DSFFSMAGMIFPIIAAYLLARS-IEWYWVYACIGLVYVAIFILT  179 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHHHHHH
Confidence            8888899999999888776531 589999998887766544433

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.76  E-value=3.1e-18  Score=123.53  Aligned_cols=129  Identities=24%  Similarity=0.230  Sum_probs=106.4

Q ss_pred             CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcc-cccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHH
Q psy4740           2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAA-RQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSF   80 (147)
Q Consensus         2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~   80 (147)
                      ++++|+++||+|||+++..+.++..++..++.... ..+++.+++.|++.|++.+...+....++.|++|+++|++.+++
T Consensus        88 ~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~  167 (481)
T TIGR00879        88 ALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSL  167 (481)
T ss_pred             HHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhH
Confidence            57899999999999999999999998888875542 23456889999999999999999999999999999999999999


Q ss_pred             HHhhhhhHHHHHHHHH---HHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhccCCC
Q psy4740          81 VFAGNQIGTVFSSFLS---GFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDP  133 (147)
Q Consensus        81 ~~~~~~~g~~~~~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (147)
                      .+....+|..+++.++   ....+.  .+||+.|++.+...++. +...++.||+|
T Consensus       168 ~~~~~~~G~~~~~~~~~~~~~~~~~--~~w~~~f~~~~~~~~~~-~~~~~~l~~~~  220 (481)
T TIGR00879       168 YQLAITFGILVAYGFGSGKVSLNNT--LGWRIPLGLQLIPAGLL-FLGLFFLPESP  220 (481)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCCCC--ccHHHHHHHHHHHHHHH-HHHHhcCCCCh
Confidence            9999999999999998   444344  69999999966655543 34445556654

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>KOG0255|consensus

Probab=99.75  E-value=7.1e-18  Score=124.02  Aligned_cols=126  Identities=25%  Similarity=0.371  Sum_probs=111.0

Q ss_pred             CCcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHH
Q psy4740           1 MHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSF   80 (147)
Q Consensus         1 ~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~   80 (147)
                      |++++|.++||+|||++++++.++..++....+++  +|+..+++.|++.|++.++.......++.|+.++++|+.+..+
T Consensus       134 G~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a--~~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~R~~~~~~  211 (521)
T KOG0255|consen  134 GSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFA--PNYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQRGLALTL  211 (521)
T ss_pred             HHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHh--CcHHHHHHHHHHHHhhccchhHHhHhhheeecCcchhhHHHHH
Confidence            45788999999999999999999999999999999  9999999999999999999999999999999999999999999


Q ss_pred             HHhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhccCCCC
Q psy4740          81 VFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPA  134 (147)
Q Consensus        81 ~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (147)
                       ......++.+++...+.+..    +||+.+++..++..+.++. +++.+|+|+
T Consensus       212 -~~~~~~~~~~~~~~~a~~~~----~Wr~~~~~~~~~~~~~~~~-~~l~~Es~r  259 (521)
T KOG0255|consen  212 -GGFFFVGGLMLPAGAAYITR----DWRWLFWIISIPSGLFLLL-WFLPPESPR  259 (521)
T ss_pred             -HHHHHHHHHHHHHHHHHHHh----hHHHHHHHHHHHHHHHHHH-HHccCcChH
Confidence             77777777778777777754    7999999999998876555 555557664

>PRK10504 putative transporter; Provisional

Probab=99.75  E-value=1.9e-17  Score=120.26  Aligned_cols=127  Identities=23%  Similarity=0.335  Sum_probs=111.5

Q ss_pred             CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHH
Q psy4740           2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFV   81 (147)
Q Consensus         2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~   81 (147)
                      ++++|+++||+|||+++..+..+.+++...+...  ++++.+++.|++.|++.+...+.....+.|.+|+++|++..+..
T Consensus        62 ~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (471)
T PRK10504         62 LPASGWLADRVGVRNIFFTAIVLFTLGSLFCALS--GTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFV  139 (471)
T ss_pred             HHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence            4678999999999999999988888888887777  78889999999999999999999999999999999999999999


Q ss_pred             HhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhccCC
Q psy4740          82 FAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYND  132 (147)
Q Consensus        82 ~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (147)
                      ....++|..++|.+++.+.+.  .+||+.|++......+..+......|+.
T Consensus       140 ~~~~~~g~~~g~~~~g~l~~~--~gw~~~f~~~~~~~~l~~~~~~~~~~~~  188 (471)
T PRK10504        140 TLPGQVGPLLGPALGGLLVEY--ASWHWIFLINIPVGIIGAIATLMLMPNY  188 (471)
T ss_pred             HHHHHHHHHhhhHHHHHHHhh--ccHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence            999999999999999999888  7999999998877766555555555543

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.75  E-value=2.5e-17  Score=118.86  Aligned_cols=133  Identities=20%  Similarity=0.335  Sum_probs=108.6

Q ss_pred             CCcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcc--cccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHH
Q psy4740           1 MHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAA--RQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIG   78 (147)
Q Consensus         1 ~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~   78 (147)
                      ++++.|+++||+|||+.+..+.++.+++.+.+...+  ..++..+.+.|++.|++.+..++.....+.|++|+++|++++
T Consensus        77 ~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~  156 (438)
T TIGR00712        77 SKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIV  156 (438)
T ss_pred             hhhccchhhhccCCceehHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHH
Confidence            367899999999999999999888888887765542  135667788899999999999888899999999999999999


Q ss_pred             HHHHhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhccCCCC
Q psy4740          79 SFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPA  134 (147)
Q Consensus        79 ~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (147)
                      ++.+...++|..+++.+.+...+.. .+||..|++.+++.++..+...+..||+|+
T Consensus       157 ~~~~~~~~~g~~~~~~l~~~~~~~~-~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~  211 (438)
T TIGR00712       157 SIWNCAHNIGGGIPPLLVLLGMAWF-NDWHAALYFPAICAIIVALFAFAMMRDTPQ  211 (438)
T ss_pred             HHHHHHHHhHhHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHHHHhccCCHH
Confidence            9999999999999988776544421 589999999888877766666666666543

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>KOG2533|consensus

Probab=99.75  E-value=7.5e-18  Score=122.27  Aligned_cols=140  Identities=24%  Similarity=0.439  Sum_probs=122.4

Q ss_pred             CCcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHH
Q psy4740           1 MHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSF   80 (147)
Q Consensus         1 ~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~   80 (147)
                      ++++++.+.||++..+.+....+.+.+..++....  +|++.+++.|+++|+.++..+|....+++.++.+++|+..+++
T Consensus        97 ~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~--~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~  174 (495)
T KOG2533|consen   97 GQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAV--HSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGI  174 (495)
T ss_pred             HHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHH
Confidence            46889999999998888887777777777666666  8999999999999999999999999999999999999999999


Q ss_pred             HHhhhhhHHHHHHHHHHHHHhhc----CCChhHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCChh
Q psy4740          81 VFAGNQIGTVFSSFLSGFLLKYT----DGDWPEIFYLFGILGVLWFVAWCFLCYNDPASHPYISQR  142 (147)
Q Consensus        81 ~~~~~~~g~~~~~~~~~~l~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (147)
                      +++..++|++++.+++..+.+..    ..||||.|++.+++.++..+..++.+|+.|++.+...++
T Consensus       175 ~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~~~~fl~~~  240 (495)
T KOG2533|consen  175 WYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPDNPSKAWFLTDE  240 (495)
T ss_pred             HHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEecCChhhccccchH
Confidence            99999999999999998865421    258999999999999999999999999988865444433

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.75  E-value=2.6e-17  Score=115.77  Aligned_cols=129  Identities=22%  Similarity=0.292  Sum_probs=101.2

Q ss_pred             CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccc-cHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHH
Q psy4740           2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQ-SANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSF   80 (147)
Q Consensus         2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~   80 (147)
                      +++.|+++||+|||+.+..+.++..++...+...  + +++.+++.|++.|++.+. .+....+++|++|+++|++..++
T Consensus        54 ~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~r~~~~~~  130 (366)
T TIGR00886        54 RIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLA--VQSYSVLLLLRLFIGIAGGS-FASCMPWISFFFPKKIQGTALGL  130 (366)
T ss_pred             HHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHhchh-hHhHHHHHHHhcCHhhhhHHHHH
Confidence            5789999999999999999999999999988888  7 899999999999998654 56678899999999999999999


Q ss_pred             HHhhhhhHHHHHHHHHHHHHhhc--------CCChhHHHH-HHHHHHHHHHHHHHhhccCCC
Q psy4740          81 VFAGNQIGTVFSSFLSGFLLKYT--------DGDWPEIFY-LFGILGVLWFVAWCFLCYNDP  133 (147)
Q Consensus        81 ~~~~~~~g~~~~~~~~~~l~~~~--------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  133 (147)
                      .....++|..+++.+++.+....        ..+||+.|+ ..++...+..+......+|+|
T Consensus       131 ~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (366)
T TIGR00886       131 AAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVIVPAGILLLPALLIFFVGADTP  192 (366)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHhcccCC
Confidence            99888888888887776655421        147999984 434444444444444445544

>PRK10054 putative transporter; Provisional

Probab=99.75  E-value=1.6e-17  Score=118.46  Aligned_cols=125  Identities=18%  Similarity=0.152  Sum_probs=105.6

Q ss_pred             CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHH
Q psy4740           2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFV   81 (147)
Q Consensus         2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~   81 (147)
                      +++.|+++||+|||+++.++.+...++.....+.  ++++.+++.+.+.|.+.+...+....+..|..|+++|++.+++.
T Consensus        60 ~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  137 (395)
T PRK10054         60 SLGFGILADKFDKKRYMLLAITAFASGFIAIPLV--NNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLN  137 (395)
T ss_pred             HHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHH
Confidence            5789999999999999999998888888887777  77888888888888877777788889999999999999999999


Q ss_pred             HhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhccC
Q psy4740          82 FAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYN  131 (147)
Q Consensus        82 ~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (147)
                      +...++|..++|.+++.+.+.   +|+..|++.++..++..+...+..++
T Consensus       138 ~~~~~lg~~igp~l~~~l~~~---g~~~~f~~~~~~~~i~~i~~~~~~~~  184 (395)
T PRK10054        138 YTMLNIGWTVGPPLGTLLVMQ---SINLPFWLAAICSAFPLVFIQIWVQR  184 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHHh---ccCcHHHHHHHHHHHHHHHHHHHHhc
Confidence            999999999999999988754   89999998887776655544444444

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.75  E-value=4e-17  Score=116.37  Aligned_cols=126  Identities=25%  Similarity=0.271  Sum_probs=107.9

Q ss_pred             CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHH
Q psy4740           2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFV   81 (147)
Q Consensus         2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~   81 (147)
                      +++.|+++||+|||+.+..+.+..+++...+...  ++++.+++.|++.|++.+ ..+.....+.|.+|+++|++..++.
T Consensus        71 ~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  147 (408)
T PRK09874         71 SPFWGGLADRKGRKIMLLRSALGMGIVMVLMGLA--QNIWQFLILRALLGLLGG-FVPNANALIATQVPRNKSGWALGTL  147 (408)
T ss_pred             HHHHHHHhhhhCcHHHHHHHHHHHHHHHHHHHHH--hhHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhhhhHHHHHH
Confidence            5678999999999999999998888888887776  788999999999998755 4567778889999999999999999


Q ss_pred             HhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhccCC
Q psy4740          82 FAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYND  132 (147)
Q Consensus        82 ~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (147)
                      +....+|..++|.+++.+.+.  .+|++.|++.++..++..+...+..+|.
T Consensus       148 ~~~~~~g~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (408)
T PRK09874        148 STGGVSGALLGPLAGGLLADS--YGLRPVFFITASVLFLCFLVTLFCIREN  196 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH--hCHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            999999999999999999887  6899999998887776666555555554

>TIGR00895 2A0115 benzoate transport

Probab=99.75  E-value=8.5e-18  Score=118.94  Aligned_cols=128  Identities=33%  Similarity=0.568  Sum_probs=111.6

Q ss_pred             CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHH
Q psy4740           2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFV   81 (147)
Q Consensus         2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~   81 (147)
                      +++.|+++||+|||+.+..+.++..++..++...  ++++.+++.+++.|++.+...+....++.|.+|+++|++.+++.
T Consensus        69 ~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  146 (398)
T TIGR00895        69 ALFFGPLADRIGRKRVLLWSILLFSVFTLLCALA--TNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLM  146 (398)
T ss_pred             HHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHc--cchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhH
Confidence            4678999999999999999999888888888777  78888999999999999999999999999999999999999999


Q ss_pred             HhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhccCCC
Q psy4740          82 FAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDP  133 (147)
Q Consensus        82 ~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (147)
                      .....+|..+++.+.+.+.+.  .+|+..|++.++...+..+......|+++
T Consensus       147 ~~~~~~g~~~~~~~~~~l~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (398)
T TIGR00895       147 FCGYPIGAAVGGFLAGWLIPV--FGWRSLFYVGGIAPLLLLLLLMRFLPESI  196 (398)
T ss_pred             hhHHHHHHHHHHHHHHHHhhc--ccceeehhhhhhHHHHHHHHHHHhCCCCC
Confidence            999999999999999999887  78999999886665555555555555543

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.75  E-value=2.8e-17  Score=116.04  Aligned_cols=118  Identities=26%  Similarity=0.392  Sum_probs=100.5

Q ss_pred             CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHH--------HHHHHHHHHhhccccCcccHHHHhhhhcCCcc
Q psy4740           2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSAN--------WLIALRFFEGLGEGTTFPALNTLLAQWVPPTE   73 (147)
Q Consensus         2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~   73 (147)
                      +++.|+++||+|||+++..+.++..++..++...  +++.        .+++.|++.|++.+...+....++.|.+|+++
T Consensus        52 ~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~  129 (394)
T TIGR00883        52 AIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLL--PSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGK  129 (394)
T ss_pred             HHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhC--CChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCccc
Confidence            5788999999999999999999999999988887  5543        57889999999999999999999999999999


Q ss_pred             hhHHHHHHHhhhhhHHHHHHHHHHHHHhh------cCCChhHHHHHHHHHHHHH
Q psy4740          74 RGKIGSFVFAGNQIGTVFSSFLSGFLLKY------TDGDWPEIFYLFGILGVLW  121 (147)
Q Consensus        74 r~~~~~~~~~~~~~g~~~~~~~~~~l~~~------~~~~~~~~~~~~~~~~~~~  121 (147)
                      |++..+..+....+|..+++.+...+...      ...+||+.|++.+++.++.
T Consensus       130 r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~  183 (394)
T TIGR00883       130 RGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWRIPFLVSAVLVLIG  183 (394)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhccchHHHHHHHHHHHHHH
Confidence            99999999999999999998887665431      1258999998877665543

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.75  E-value=1.6e-17  Score=118.35  Aligned_cols=123  Identities=14%  Similarity=0.098  Sum_probs=102.2

Q ss_pred             CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHH
Q psy4740           2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFV   81 (147)
Q Consensus         2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~   81 (147)
                      +++.|+++||+|||+++.++.++..++++.+...  .+.   ++.|++.|++.+...|...+++.|++|+++|+++.++.
T Consensus        55 ~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~--~~~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~  129 (393)
T PRK11195         55 APFVGAFADSFPKGRVMFIANGIKLLGCLLMLFG--IHP---LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWM  129 (393)
T ss_pred             HhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHH--HHH---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence            5789999999999999999999988888776665  443   67899999999999999999999999999999999999


Q ss_pred             HhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhccCCC
Q psy4740          82 FAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDP  133 (147)
Q Consensus        82 ~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (147)
                      +...+++..++|.+++.+.+.   .|+..+.+.+...++.. ...+..||.+
T Consensus       130 ~~~~~~~~~~Gp~lgG~l~~~---~~~~~~~i~~~~~~~~~-~~~~~l~~~~  177 (393)
T PRK11195        130 EGSTIAAILLGTVLGGALADP---HAEAALAVCALIYLLAA-LFNLFIPRLG  177 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH-HHHhcCCCCc
Confidence            999999999999999999887   47777776665544333 3334455543

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.75  E-value=5.4e-17  Score=118.25  Aligned_cols=120  Identities=13%  Similarity=0.171  Sum_probs=104.9

Q ss_pred             Ccchhhhhhh-hcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcc---hhHH
Q psy4740           2 HIPGGLLAQK-FGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTE---RGKI   77 (147)
Q Consensus         2 ~~~~g~l~d~-~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~---r~~~   77 (147)
                      ++++|+++|| +|||+++.++.++.+++.+..+..  +++..+++.+.+.|++.+...+...++++|++|+++   |+++
T Consensus        65 ~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~--~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~  142 (475)
T TIGR00924        65 TSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMS--IYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGG  142 (475)
T ss_pred             HhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhc--ccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccce
Confidence            5688999999 899999999999999999888877  677788889999999999999999999999998764   8889


Q ss_pred             HHHHHhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHH
Q psy4740          78 GSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAW  125 (147)
Q Consensus        78 ~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (147)
                      .++.+...++|..++|.+++.+.+.  .+|++.|++.++..++..+..
T Consensus       143 ~~~~~~~~niG~~ig~~l~g~l~~~--~g~~~~f~~~~~~~~~~~l~~  188 (475)
T TIGR00924       143 FTLFYMSINIGSFISPLLAGVIAEN--YGYHVGFNLAAVGMVIGLLTF  188 (475)
T ss_pred             ehhHHHHHHHHHHHHHHHHHHHHHh--cChHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999887  689999998876555443333

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.74  E-value=4.7e-17  Score=118.61  Aligned_cols=130  Identities=18%  Similarity=0.244  Sum_probs=103.2

Q ss_pred             CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHH
Q psy4740           2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFV   81 (147)
Q Consensus         2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~   81 (147)
                      +++.|+++||+|||+++..+.++.+++..+++..  +++..+++.|++.|++.+... ....+++|++|+++|++++++.
T Consensus        88 ~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~--~s~~~l~~~r~l~G~~~~~~~-~~~~~i~~~~~~~~rg~a~g~~  164 (476)
T PLN00028         88 RLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLV--SSATGFIAVRFFIGFSLATFV-SCQYWMSTMFNGKIVGTANGIA  164 (476)
T ss_pred             HHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHhhH-HHHHHHHHhcChhheeHHHHHH
Confidence            5788999999999999999999988888888877  788888999999999887643 4566789999999999999999


Q ss_pred             HhhhhhHHHHHHHHHHHHHh----h---cCCChhHHHHHHHHHHHHHHHHHHhhccCCCC
Q psy4740          82 FAGNQIGTVFSSFLSGFLLK----Y---TDGDWPEIFYLFGILGVLWFVAWCFLCYNDPA  134 (147)
Q Consensus        82 ~~~~~~g~~~~~~~~~~l~~----~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (147)
                      +...++|..+++.+...+..    .   ...+||+.|++.+++.++..+...++.++.|+
T Consensus       165 ~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~~~~~~p~  224 (476)
T PLN00028        165 AGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLTLGQDLPD  224 (476)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHcCcCCC
Confidence            88778888777766654432    1   01389999999988887766666655555443

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.73  E-value=6.3e-17  Score=115.26  Aligned_cols=118  Identities=21%  Similarity=0.194  Sum_probs=99.4

Q ss_pred             CCcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcc------cccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcch
Q psy4740           1 MHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAA------RQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTER   74 (147)
Q Consensus         1 ~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r   74 (147)
                      ++++.|+++||+|||+++..+.++.+++...+....      ..++..+++.|++.|++.+...+....++.|..|+++|
T Consensus        67 ~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r  146 (399)
T PRK05122         67 SRPHAGRYADTLGPKKAVVFGLCGCALSGLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHT  146 (399)
T ss_pred             hchhhHhHHhccCCcchHHHHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhh
Confidence            368999999999999999999888777665544321      02466788999999999999999999999999999999


Q ss_pred             hHHHHHHHhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHH
Q psy4740          75 GKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVL  120 (147)
Q Consensus        75 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  120 (147)
                      ++..++.......|..+++.+++.+.+.  .+|+..+++..+..++
T Consensus       147 ~~~~~~~~~~~~~g~~~g~~l~~~l~~~--~g~~~~~~~~~~~~~~  190 (399)
T PRK05122        147 GRVISWNGIATYGALAIGAPLGVLLYHW--GGLAGLGLLIMLLALL  190 (399)
T ss_pred             ccchhhhhhhhhHHHHHHHHHHHHHHHc--ccHHHHHHHHHHHHHH
Confidence            9999999999999999999999999887  7899988776665443

>KOG0254|consensus

Probab=99.73  E-value=1.7e-17  Score=121.85  Aligned_cols=130  Identities=21%  Similarity=0.212  Sum_probs=113.4

Q ss_pred             CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHH
Q psy4740           2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFV   81 (147)
Q Consensus         2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~   81 (147)
                      +++.|+++|++|||+.++++.+.+.++.++++.+  ++..+++++|++.|++.|......+.+++|..|++.||...+..
T Consensus       106 ~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a--~~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~  183 (513)
T KOG0254|consen  106 SLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALA--PSWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLY  183 (513)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHH
Confidence            5688999999999999999999999999999999  89999999999999999999999999999999999999999999


Q ss_pred             HhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhccCCCCC
Q psy4740          82 FAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPAS  135 (147)
Q Consensus        82 ~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (147)
                      +....+|..++..++... ++...+||..+.+..++.++..+. .++.||+|+.
T Consensus       184 ~l~~~~Gi~~~~~~~~~~-~~~~~~Wr~~~~~~~i~~~~~~~~-~~~~pesp~~  235 (513)
T KOG0254|consen  184 QLFITIGILLGYCINYGT-SKVYAGWRIPLGLALIPAVILALG-MLFLPESPRW  235 (513)
T ss_pred             HHHHHHHHHHHHHHhhhh-ccCCccHHHHHHHHHHHHHHHHHH-HHhCCCChHH
Confidence            999998888884444433 331138999999999998887777 7778877753

>PRK11043 putative transporter; Provisional

Probab=99.73  E-value=7.1e-17  Score=115.13  Aligned_cols=125  Identities=20%  Similarity=0.274  Sum_probs=108.1

Q ss_pred             CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHH
Q psy4740           2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFV   81 (147)
Q Consensus         2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~   81 (147)
                      ++++|+++||+|||+.+..+..+..++...+...  ++++.+++.|++.|++.+...+.....+.|.+|++++++..+..
T Consensus        58 ~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (401)
T PRK11043         58 QLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWV--ESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATI  135 (401)
T ss_pred             HHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence            5789999999999999999999988888888777  88999999999999988877777788899999999999999998


Q ss_pred             HhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhcc
Q psy4740          82 FAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCY  130 (147)
Q Consensus        82 ~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (147)
                      .....++..++|.+++.+.+.  .+|++.|++.+...++..+......+
T Consensus       136 ~~~~~~~~~~g~~i~~~l~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~  182 (401)
T PRK11043        136 MPLVALSPALAPLLGAWLLNH--FGWQAIFATLFAITLLLILPTLRLKP  182 (401)
T ss_pred             HHHHHHHHHHHHHHHHHHHhc--CChHHHHHHHHHHHHHHHHHHHHcCC
Confidence            888899999999999999887  79999999888877766555444433

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.73  E-value=9.8e-17  Score=116.34  Aligned_cols=124  Identities=20%  Similarity=0.258  Sum_probs=104.6

Q ss_pred             CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHH-HHHHHhhccccCcccHHHHhhhhcCCcchhHHHHH
Q psy4740           2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIA-LRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSF   80 (147)
Q Consensus         2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~   80 (147)
                      .++.|+++||+|||++++.+.++..++++.+++.  ++++.+++ .|++.|++.+...+.....+.++++ ++|+++.++
T Consensus        71 ~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~  147 (455)
T TIGR00892        71 GPISSILVNRFGCRPVVIAGGLLASLGMILASFS--SNVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGL  147 (455)
T ss_pred             hHHHHHHHHHcCchHHHHhhHHHHHHHHHHHHHh--hhHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHH
Confidence            4688999999999999999999999998888887  77777654 4688999998777777788889986 789999999


Q ss_pred             HHhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhcc
Q psy4740          81 VFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCY  130 (147)
Q Consensus        81 ~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (147)
                      .+....+|..++|.+.+.+.+.  .+||+.|++.+++.++..+..++..+
T Consensus       148 ~~~~~~~g~~~~~~l~~~l~~~--~gwr~~f~~~~~~~~~~~v~~~~~~~  195 (455)
T TIGR00892       148 AMAGSPVFLSTLAPLNQYLFES--FGWRGSFLILGGLLLHCCVCGALMRP  195 (455)
T ss_pred             HHhcccHHHHHHHHHHHHHHHH--hChHHHHHHHHHHHHHHHHHHHHhCC
Confidence            9999999999999999998887  69999999998887765554444443

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.73  E-value=1.2e-16  Score=112.69  Aligned_cols=129  Identities=19%  Similarity=0.080  Sum_probs=102.0

Q ss_pred             CcchhhhhhhhcchHHHHH-HHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHH--H
Q psy4740           2 HIPGGLLAQKFGGKHTLGF-GILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKI--G   78 (147)
Q Consensus         2 ~~~~g~l~d~~gr~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~--~   78 (147)
                      +++.|+++||+|||+.++. +.....+....+...  ++++.+++.|++.|...+...|....+..|..|+++|.+.  .
T Consensus        50 ~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~  127 (375)
T TIGR00899        50 SQLLATRSDYQGDRKGLILFCCLLAALACLLFAWN--RNYFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFS  127 (375)
T ss_pred             HHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHH
Confidence            4678999999999887654 555556666677776  7888888889888887777778788888898887777654  5


Q ss_pred             HHHHhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhccCCCC
Q psy4740          79 SFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPA  134 (147)
Q Consensus        79 ~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (147)
                      +......++|..++|.+++.+.+.  .+||+.|++.+...++..+..++..||.|+
T Consensus       128 ~~~~~~~~~g~~ig~~~~~~l~~~--~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~  181 (375)
T TIGR00899       128 SVMRAQISLAWVIGPPLAFWLALG--FGFTVMFLTAALAFVLCGVLVWLFLPSYPR  181 (375)
T ss_pred             HHHHHHHhHHHHHhhhHHHHHHHh--cccHHHHHHHHHHHHHHHHHHHHhCCCccc
Confidence            777778889999999999999887  799999999988877666666665666544

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.72  E-value=4.4e-17  Score=118.99  Aligned_cols=113  Identities=19%  Similarity=0.310  Sum_probs=103.0

Q ss_pred             CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHH
Q psy4740           2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFV   81 (147)
Q Consensus         2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~   81 (147)
                      +++.|+++||+|||+.+..+.++.+++...+...  ++++.+++.|++.|++.+..++....++.|.+|+++|++.+++.
T Consensus        72 ~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  149 (496)
T PRK03893         72 GLLLGAMGDRYGRRLAMVISIVLFSVGTLACGFA--PGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFL  149 (496)
T ss_pred             HHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence            4678999999999999999999999999888887  88999999999999999999999999999999999999999999


Q ss_pred             HhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHH
Q psy4740          82 FAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILG  118 (147)
Q Consensus        82 ~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  118 (147)
                      ....++|..++|.+.+.+.+.  .+||+.|++.....
T Consensus       150 ~~~~~~g~~~~~~~~~~l~~~--~~w~~~f~~~~~~~  184 (496)
T PRK03893        150 ISGFSIGAVVAAQVYSLVVPV--WGWRALFFIGILPI  184 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHhcc--CCHHHHHHHHHHHH
Confidence            999999999999999998887  79999988754443

>KOG3764|consensus

Probab=99.72  E-value=2.6e-17  Score=114.55  Aligned_cols=131  Identities=18%  Similarity=0.213  Sum_probs=121.5

Q ss_pred             CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcc-hhHHHHH
Q psy4740           2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTE-RGKIGSF   80 (147)
Q Consensus         2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~-r~~~~~~   80 (147)
                      +++.|.+.||+|+|..++.|.++....++++++.  .+++++++.|.++|++.++......+.++|.+|+++ |++++|+
T Consensus       123 np~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg--~sy~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~er~~vmGi  200 (464)
T KOG3764|consen  123 NPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFG--NSYPMLFVARSLQGVGSAFADTSGLAMLADVFPEDNERGSVMGI  200 (464)
T ss_pred             cccchhhHHHhccccHHHHHHHHHHHHHHHHHHc--chhHHHHHHHHHhhhhHHHHHhhhHHHHHHHcccchhhhHHHHH
Confidence            6789999999999999999999999999999999  999999999999999999999999999999998865 7999999


Q ss_pred             HHhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhccCCCCCC
Q psy4740          81 VFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPASH  136 (147)
Q Consensus        81 ~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (147)
                      .-.+.++|-+++|.++|.+++.  .|.+.+|.+.+++.++...+.++..++++.++
T Consensus       201 algfislG~lvgPpfGGilYe~--~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~~~~  254 (464)
T KOG3764|consen  201 ALGFISLGVLVGPPFGGILYEF--AGKSAPFLVLAIVLLLDGALQLLVIEPTEMDP  254 (464)
T ss_pred             HHHHHhccceecCCcccchHhh--cCCcCcHHHHHHHHHHHHHHHHheeCccccCc
Confidence            9999999999999999999999  89999999999999998888888777655444

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.72  E-value=1.6e-16  Score=110.45  Aligned_cols=120  Identities=35%  Similarity=0.649  Sum_probs=109.5

Q ss_pred             CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHH
Q psy4740           2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFV   81 (147)
Q Consensus         2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~   81 (147)
                      +++.|+++||+|||+.+..+.+...++.......  ++++.+++.|++.|++.+...+....++.|.+|+|+|++.++..
T Consensus        51 ~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (352)
T cd06174          51 SLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFA--SSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLF  128 (352)
T ss_pred             HHhHHHHHHHhCCchhhHHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHH
Confidence            5789999999999999999999999999988887  88999999999999999999999999999999999999999999


Q ss_pred             HhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHH
Q psy4740          82 FAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAW  125 (147)
Q Consensus        82 ~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (147)
                      +...++|..++|.+++.+.+.  .+|++.+++.+...++..+..
T Consensus       129 ~~~~~~g~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~  170 (352)
T cd06174         129 SAGFGLGALLGPLLGGLLAES--LGWRWLFLILAILGLLLALLL  170 (352)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999888  679999998887776654443

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK12382 putative transporter; Provisional

Probab=99.71  E-value=2e-16  Score=112.49  Aligned_cols=116  Identities=20%  Similarity=0.139  Sum_probs=95.3

Q ss_pred             CCcchhhhhhhhcchHHHHHHHHHHHHHHHHh---hhc---ccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcch
Q psy4740           1 MHIPGGLLAQKFGGKHTLGFGILSTAIFTLLT---PFA---ARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTER   74 (147)
Q Consensus         1 ~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~---~~~---~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r   74 (147)
                      +++++|+++||+|||+.+..+.+...++....   ...   ...+++.+++.|++.|++.+...+...+++.|.+|+++|
T Consensus        67 ~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r  146 (392)
T PRK12382         67 TRGYAGRLADQYGAKRSALQGMLACGLAGLAYLLAAILPVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHS  146 (392)
T ss_pred             HhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccc
Confidence            36889999999999999998877766554322   111   124678899999999999998888888899999999999


Q ss_pred             hHHHHHHHhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHH
Q psy4740          75 GKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILG  118 (147)
Q Consensus        75 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  118 (147)
                      +++++..+...+.|..++|.+++.+.+.  .+|+..+.+..+..
T Consensus       147 ~~a~~~~~~~~~~g~~~g~~~~~~l~~~--~g~~~~~~~~~~~~  188 (392)
T PRK12382        147 GKVMSWNGMAMYGALAAGAPLGLLLHSH--FGFAALALTTMVLP  188 (392)
T ss_pred             chhhhHHHHHHHHHHHHHHHHHHHHHhc--cChHHHHHHHHHHH
Confidence            9999999999999999999999998887  68998776654443

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.69  E-value=2.7e-16  Score=119.06  Aligned_cols=127  Identities=17%  Similarity=0.123  Sum_probs=105.5

Q ss_pred             CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHH
Q psy4740           2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFV   81 (147)
Q Consensus         2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~   81 (147)
                      +++.|+++||+|||+++..+.++.++++++.++.  ++...+++.+++.+++.+..++....+++|++|++.|++++|+.
T Consensus       612 ~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~--~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~Pt~~Rgta~Gi~  689 (742)
T TIGR01299       612 NIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFG--NSESAMIALLCLFGGLSIAAWNALDVLTVELYPSDKRATAFGFL  689 (742)
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence            4678999999999999999999999998888777  66667777788888887788888999999999999999999999


Q ss_pred             HhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhccCCCC
Q psy4740          82 FAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPA  134 (147)
Q Consensus        82 ~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (147)
                      ++...+|.+++|.+++.+.+.   +...+|++.+++.++..++.. +.||+..
T Consensus       690 ~~~~rlGaiigp~i~g~L~~~---~~~~pf~i~a~~lll~~ll~~-~LPET~~  738 (742)
T TIGR01299       690 NALCKAAAVLGILIFGSFVGI---TKAAPILFASAALACGGLLAL-KLPDTRG  738 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHh---hhHHHHHHHHHHHHHHHHHHH-hCCCCcc
Confidence            999999999999999988776   456677777777666555544 4466543

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>KOG2615|consensus

Probab=99.69  E-value=1.4e-16  Score=110.40  Aligned_cols=97  Identities=20%  Similarity=0.310  Sum_probs=88.9

Q ss_pred             CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHH
Q psy4740           2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFV   81 (147)
Q Consensus         2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~   81 (147)
                      ++.+|.++||+|||++++.+.+..++...+.+.+  .|+..++..|++.|+.-+ +....-++++|..++++|+.+++.+
T Consensus        85 S~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S--~~F~afv~aR~l~Gi~kg-nl~v~rAiisdV~sek~r~l~ms~v  161 (451)
T KOG2615|consen   85 SPLWGCLSDRYGRKPVLLACLIGVALSYLLWALS--RNFAAFVLARFLGGIFKG-NLSVIRAIISDVVSEKYRPLGMSLV  161 (451)
T ss_pred             hhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhhhhccC-chHHHHHHHHhhcChhhccceeeee
Confidence            5789999999999999999999999999998888  898677777999999876 4566899999999999999999999


Q ss_pred             HhhhhhHHHHHHHHHHHHHh
Q psy4740          82 FAGNQIGTVFSSFLSGFLLK  101 (147)
Q Consensus        82 ~~~~~~g~~~~~~~~~~l~~  101 (147)
                      ....++|-++||++++.+..
T Consensus       162 ~~a~~lGfilGPmIGgyla~  181 (451)
T KOG2615|consen  162 GTAFGLGFILGPMIGGYLAQ  181 (451)
T ss_pred             ehhhhcchhhcchhhhHHHh
Confidence            99999999999999999887

>TIGR00889 2A0110 nucleoside transporter

Probab=99.68  E-value=8e-16  Score=110.55  Aligned_cols=132  Identities=14%  Similarity=0.158  Sum_probs=108.1

Q ss_pred             CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccc--cHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHH
Q psy4740           2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQ--SANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGS   79 (147)
Q Consensus         2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~   79 (147)
                      +++.|+++||+|+|+++..+.++..+...........  +...+++.+++.|++.+...+....++.|.+|+++|+++++
T Consensus       268 ~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g  347 (418)
T TIGR00889       268 ILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQG  347 (418)
T ss_pred             HHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Confidence            4578899999999999999998888876665553111  24556778899999988888888899999999999999999


Q ss_pred             HHH-hhhhhHHHHHHHHHHHHHhhcC----CChhHHHHHHHHHHHHHHHHHHhhccCCC
Q psy4740          80 FVF-AGNQIGTVFSSFLSGFLLKYTD----GDWPEIFYLFGILGVLWFVAWCFLCYNDP  133 (147)
Q Consensus        80 ~~~-~~~~~g~~~~~~~~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (147)
                      +.+ ...++|..++|.+++.+.++.+    .+|+.+|.+.+++.++..+...++.+|+.
T Consensus       348 ~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~  406 (418)
T TIGR00889       348 LFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYSH  406 (418)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence            997 5788999999999999998753    36999999988888887777777776653

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.68  E-value=6.7e-16  Score=110.76  Aligned_cols=122  Identities=18%  Similarity=0.194  Sum_probs=103.6

Q ss_pred             CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHH
Q psy4740           2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFV   81 (147)
Q Consensus         2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~   81 (147)
                      +++.|+++||+|.|+++.++.+.+.+.+.+.++.  ++...+.+.|++.|++++..+ ....++.+++|+++|+++.++.
T Consensus        79 qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa--~Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~  155 (511)
T TIGR00806        79 LVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLG--TSVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYS  155 (511)
T ss_pred             HHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHH
Confidence            5789999999999999999999999999999998  889999999999999999999 9999999999999999999999


Q ss_pred             HhhhhhHHHHHHHHHHHHHhhcCCChhHH---HHHHHHHHHHHHHHHHhhcc
Q psy4740          82 FAGNQIGTVFSSFLSGFLLKYTDGDWPEI---FYLFGILGVLWFVAWCFLCY  130 (147)
Q Consensus        82 ~~~~~~g~~~~~~~~~~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~  130 (147)
                      .++..+|..+++++++.+. .  .+|+.-   .++......+..+. .+++|
T Consensus       156 ~sg~~vG~~Ia~~L~qll~-s--~gWr~y~~Ln~Isl~s~~~a~~~-a~~LP  203 (511)
T TIGR00806       156 RAAVLLGVFLSSVLGQLLV-T--LGWISYSTLNIISLVFMTFSVFL-ALFLK  203 (511)
T ss_pred             HHHHHHHHHHHHHHHHHHH-h--cCchhHHHHHHHHHHHHHHHHHH-HHhCC
Confidence            9999999999999999944 4  477653   34444444443333 34444

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.66  E-value=1.8e-15  Score=108.53  Aligned_cols=123  Identities=15%  Similarity=0.123  Sum_probs=103.9

Q ss_pred             CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhc-ccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHH
Q psy4740           2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFA-ARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSF   80 (147)
Q Consensus         2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~   80 (147)
                      +++.|++.||+|||+++..+.++.+++..++... ..++++.+++.+++.|++.+...+..+.++.+..|+++|++.+++
T Consensus        55 ~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~  134 (410)
T TIGR00885        55 AIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNL  134 (410)
T ss_pred             HHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHH
Confidence            4678999999999999999999999998876433 125788999999999999999999999999999999999999999


Q ss_pred             HHhhhhhHHHHHHHHHHHHHhhc------------------------CCChhHHHHHHHHHHHHHHHH
Q psy4740          81 VFAGNQIGTVFSSFLSGFLLKYT------------------------DGDWPEIFYLFGILGVLWFVA  124 (147)
Q Consensus        81 ~~~~~~~g~~~~~~~~~~l~~~~------------------------~~~~~~~~~~~~~~~~~~~~~  124 (147)
                      .+...++|..++|.+++.+....                        ..+||++|.+.+.+.++..+.
T Consensus       135 ~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~  202 (410)
T TIGR00885       135 AQSFNPFGSIIGMVVAQQLILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALL  202 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999998775331                        025999998888776654433

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>KOG0569|consensus

Probab=99.66  E-value=4e-16  Score=112.54  Aligned_cols=134  Identities=26%  Similarity=0.323  Sum_probs=111.3

Q ss_pred             CCcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcc-cccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHH
Q psy4740           1 MHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAA-RQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGS   79 (147)
Q Consensus         1 ~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~   79 (147)
                      |++..++++||+|||..+.+..++..++..++..+. .+++.+++++|++.|+..+........++.|..|++.||..-.
T Consensus        76 Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~  155 (485)
T KOG0569|consen   76 GSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYLTEISPKNLRGALGT  155 (485)
T ss_pred             HHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhhccHHHH
Confidence            356789999999999999999888888887776652 3678999999999999999999999999999999999999999


Q ss_pred             HHHhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhccCCCCC
Q psy4740          80 FVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPAS  135 (147)
Q Consensus        80 ~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (147)
                      +...+..+|..++..++..-.-.+...|++.+....++.++. ++...+.||+|+.
T Consensus       156 ~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~-l~~l~~~PESPk~  210 (485)
T KOG0569|consen  156 LLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQ-LALLPFLPESPKY  210 (485)
T ss_pred             HHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHH-HHHHhcCCCCcch
Confidence            999999999999977775544333357999999988888774 5555677887753

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.66  E-value=2.3e-15  Score=109.58  Aligned_cols=120  Identities=23%  Similarity=0.278  Sum_probs=94.2

Q ss_pred             Ccchhhhhhhh-cchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCc--chhHHH
Q psy4740           2 HIPGGLLAQKF-GGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPT--ERGKIG   78 (147)
Q Consensus         2 ~~~~g~l~d~~-gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~--~r~~~~   78 (147)
                      ++++|+++||+ |||+++.++.++..++.+.+.... .+...+.+...+..++.+...+...++++|.+|++  +|..++
T Consensus        62 ~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~-~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf  140 (493)
T PRK15462         62 PILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASE-IHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGF  140 (493)
T ss_pred             HHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhh-cchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCcccccee
Confidence            45789999999 999999999999998887665431 22233444444555667777788889999999876  799999


Q ss_pred             HHHHhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHH
Q psy4740          79 SFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVA  124 (147)
Q Consensus        79 ~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  124 (147)
                      ++.+...++|..++|.+.+.+.+.  .+|++.|.+.++..++..+.
T Consensus       141 ~i~Y~~~nlG~~iap~l~g~L~~~--~Gw~~~F~iaaigm~l~li~  184 (493)
T PRK15462        141 SLMYAAGNVGSIIAPIACGYAQEE--YSWAMGFGLAAVGMIAGLVI  184 (493)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhh--hChHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999887  69999999876655443333

>TIGR00805 oat sodium-independent organic anion transporter

Probab=99.66  E-value=3.6e-16  Score=117.24  Aligned_cols=130  Identities=15%  Similarity=0.221  Sum_probs=106.3

Q ss_pred             CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcc---------------------------------------------
Q psy4740           2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAA---------------------------------------------   36 (147)
Q Consensus         2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~---------------------------------------------   36 (147)
                      +++.+++.||+|||+.+.++.++.++++++++..+                                             
T Consensus        85 ~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~  164 (633)
T TIGR00805        85 IIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQK  164 (633)
T ss_pred             HHHHHHhhcccCcceEEEecHHHHHHHHHHHhChHHhcCCccccccccccccccccccccccCCCCCCcccccccccccc
Confidence            46789999999999999999999999999886542                                             


Q ss_pred             ----cccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHHHhhhhhHHHHHHHHHHHHHhhc-CC------
Q psy4740          37 ----RQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLKYT-DG------  105 (147)
Q Consensus        37 ----~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-~~------  105 (147)
                          ...+..++++|++.|++.+..++...+++.|++|+++|+.++++.+....+|..+++++++.+.+.. ++      
T Consensus       165 ~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~  244 (633)
T TIGR00805       165 QHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTE  244 (633)
T ss_pred             ccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCC
Confidence                0024567789999999999999999999999999999999999999999999999999999887642 10      


Q ss_pred             -------------ChhHHHHHHHHHHHHHHHHHHhhccC
Q psy4740         106 -------------DWPEIFYLFGILGVLWFVAWCFLCYN  131 (147)
Q Consensus       106 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (147)
                                   .|+..|++.+++.++..+..+++.++
T Consensus       245 ~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l~~~p~~  283 (633)
T TIGR00805       245 DVILTPTDPRWIGAWWIGFLICGGVALLTSIPFFFFPKA  283 (633)
T ss_pred             CCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhCccc
Confidence                         26777888887777655554444333

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.66  E-value=1.6e-15  Score=120.29  Aligned_cols=126  Identities=17%  Similarity=0.181  Sum_probs=97.8

Q ss_pred             CcchhhhhhhhcchHHHHH---HHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHH
Q psy4740           2 HIPGGLLAQKFGGKHTLGF---GILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIG   78 (147)
Q Consensus         2 ~~~~g~l~d~~gr~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~   78 (147)
                      ++++|+++||+|||+++..   ..+..++........  ++++.+++.|+++|++.+...|...+++.|++|+++|++++
T Consensus        69 ~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~--~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~  146 (1140)
T PRK06814         69 SALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHL--NSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDELLGAN  146 (1140)
T ss_pred             hhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccccchhh
Confidence            5788999999999997533   222222222222233  68899999999999999999999999999999999999999


Q ss_pred             HHHHhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhccCC
Q psy4740          79 SFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYND  132 (147)
Q Consensus        79 ~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (147)
                      ++.++..++|..++|.+++.+.+.  .+|++.|....+..++. +...+..++.
T Consensus       147 ~~~~~~~~ig~~igp~l~g~l~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~  197 (1140)
T PRK06814        147 ALVEAGTFIAILLGTIIGGLATIS--GNFVILVALLMGIAVLG-WLASLFIPKT  197 (1140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHH-HHHHhhCCCC
Confidence            999999999999999999999988  78999885544444443 3333444443

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.66  E-value=4.6e-15  Score=108.82  Aligned_cols=116  Identities=20%  Similarity=0.230  Sum_probs=97.3

Q ss_pred             cchhhhhhh-hcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcc--hhHHHH
Q psy4740           3 IPGGLLAQK-FGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTE--RGKIGS   79 (147)
Q Consensus         3 ~~~g~l~d~-~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~--r~~~~~   79 (147)
                      +++|+++|| +|||+.+..+.++.+++..++.... ++...+++.+++.|++.+...+...+++.|++|+++  |..+++
T Consensus        75 ~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~-~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~  153 (500)
T PRK09584         75 AIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSG-HDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFT  153 (500)
T ss_pred             HHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcch
Confidence            468999999 5999999999999999888877651 345566788899999999999999999999998654  456788


Q ss_pred             HHHhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHH
Q psy4740          80 FVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLW  121 (147)
Q Consensus        80 ~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  121 (147)
                      +.+...++|..++|.+++.+.++  .+|++.|++.++...+.
T Consensus       154 ~~~~~~~iG~~~gp~i~g~l~~~--~g~~~~F~i~~i~~~i~  193 (500)
T PRK09584        154 MYYMSINIGSFFSMLATPWLAAK--YGWSVAFALSVVGMLIT  193 (500)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHh--hCHHHHHHHHHHHHHHH
Confidence            88999999999999999999887  79999999877654443

>TIGR00897 2A0118 polyol permease family

Probab=99.65  E-value=2.3e-15  Score=107.63  Aligned_cols=128  Identities=14%  Similarity=0.058  Sum_probs=96.1

Q ss_pred             CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhh-cc-cccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHH
Q psy4740           2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPF-AA-RQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGS   79 (147)
Q Consensus         2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~   79 (147)
                      +++.|++.||+|||+++..+.++..++...+.. .. ..+++.+++.|++.|++.+...+.....+.|.+|+++|++++|
T Consensus        65 ~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g  144 (402)
T TIGR00897        65 AWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGLGHANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVG  144 (402)
T ss_pred             HHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHH
Confidence            578899999999999999999888887765421 11 1467788899999999888777777788889999999999999


Q ss_pred             HHHhhhhhHH-HHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhccC
Q psy4740          80 FVFAGNQIGT-VFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYN  131 (147)
Q Consensus        80 ~~~~~~~~g~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (147)
                      +.+...++|. .++|.+++.+.+.  .+|+..++.......+..+...+..++
T Consensus       145 ~~~~~~~~g~~~~g~~~~~~l~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~  195 (402)
T TIGR00897       145 WFWAVYSIGIGVFGSYYSSYAIPA--FGEMNTLWSALAFVLTGGVIALFSNKD  195 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccc--cchHHHHHHHHHHHHHHHHHHHhccCC
Confidence            9999999996 5889988888776  576655554443333333333333343

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>TIGR00896 CynX cyanate transporter

Probab=99.65  E-value=4.7e-15  Score=104.23  Aligned_cols=115  Identities=19%  Similarity=0.245  Sum_probs=96.1

Q ss_pred             CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHH
Q psy4740           2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFV   81 (147)
Q Consensus         2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~   81 (147)
                      +++.|+++||+|||+++..+.+...++...+ ..  ++.+.+++.|++.|++.+...+.....+.|.+| ++|++..+..
T Consensus        52 ~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~--~~~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~  127 (355)
T TIGR00896        52 APLAPWLARRFGEERSVAAGLLLIAAGILIR-SA--PGTALLFAGTALIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLY  127 (355)
T ss_pred             HHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-Hh--ccHHHHHHHHHHHHHHHHHHhccchHHHHHhCc-chhhHHHHHH
Confidence            5788999999999999999988887777766 55  678888899999999998888878888889886 6899999999


Q ss_pred             HhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHH
Q psy4740          82 FAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVL  120 (147)
Q Consensus        82 ~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  120 (147)
                      +...++|..+++.+.+.+.+..+.+||..|...++..++
T Consensus       128 ~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~~  166 (355)
T TIGR00896       128 SMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPALL  166 (355)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence            999999999999999888776333499988877655443

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.65  E-value=5.8e-16  Score=111.04  Aligned_cols=128  Identities=16%  Similarity=0.141  Sum_probs=103.0

Q ss_pred             CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhh---cccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHH
Q psy4740           2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPF---AARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIG   78 (147)
Q Consensus         2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~   78 (147)
                      +++.|+++||+|||+++..+..+.+++......   ...++++.+++.|++.|++.+...+.....+.|..|+++|++..
T Consensus        69 ~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (417)
T PRK10489         69 LMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFLPEPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAG  148 (417)
T ss_pred             HHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHH
Confidence            578899999999999998887776666554432   11256788889999999988888888888999999999999999


Q ss_pred             HHHHhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhccCC
Q psy4740          79 SFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYND  132 (147)
Q Consensus        79 ~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (147)
                      ++.+...++|..++|.+++.+.+.  .+|++.|++.++..++..+.. +..|+.
T Consensus       149 ~~~~~~~~~g~~~g~~l~g~l~~~--~~~~~~~~~~~~~~~~~~~~~-~~l~~~  199 (417)
T PRK10489        149 AITMLTVRLGSVISPALGGLLIAA--GGVAWNYGLAAAGTFITLLPL-LRLPAL  199 (417)
T ss_pred             HHHHHHHhHHHHhHHHHHHHHHHH--HhhHHHHHHHHHHHHHHHHHH-HhCCCC
Confidence            999999999999999999999887  689999988777666544443 344543

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.65  E-value=2.8e-15  Score=108.15  Aligned_cols=131  Identities=12%  Similarity=0.163  Sum_probs=101.8

Q ss_pred             CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcc---cccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHH
Q psy4740           2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAA---RQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIG   78 (147)
Q Consensus         2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~   78 (147)
                      +++.|++.||+|+|+++.++.++..+.+...++..   .+++..+++.|++.|++ +..++.....+++++|+++||+++
T Consensus        87 rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~  165 (462)
T PRK15034         87 RVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAVQNPNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSAL  165 (462)
T ss_pred             HHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHH
Confidence            35779999999999999999999998888887642   26899999999999997 778888999999999999999999


Q ss_pred             HHHHhhhhhHHHHHHHHHHHHH-----hhc-----------CCChhHHHHHHHHHHHHHHHHHHhhccCCC
Q psy4740          79 SFVFAGNQIGTVFSSFLSGFLL-----KYT-----------DGDWPEIFYLFGILGVLWFVAWCFLCYNDP  133 (147)
Q Consensus        79 ~~~~~~~~~g~~~~~~~~~~l~-----~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (147)
                      ++.....++|..+++.+...+.     ...           ..+|+.+.++..++.++..+..++..++.+
T Consensus       166 Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~~  236 (462)
T PRK15034        166 GINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMNDIA  236 (462)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence            9997767777766655554332     210           134788888888877776666666655544

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.65  E-value=4.2e-15  Score=105.96  Aligned_cols=126  Identities=21%  Similarity=0.241  Sum_probs=105.3

Q ss_pred             CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHH
Q psy4740           2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFV   81 (147)
Q Consensus         2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~   81 (147)
                      +++.|++.||+|+|+.+..+..+..++.......  ++.+..++..++.|++.+..++.......|..|+++|++..+++
T Consensus       266 ~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~  343 (399)
T PRK05122        266 RLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLA--PSPWMALIGAALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAY  343 (399)
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            3568999999999999888888777777766665  67777778889999998888887778888999999999999999


Q ss_pred             HhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhccC
Q psy4740          82 FAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYN  131 (147)
Q Consensus        82 ~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (147)
                      +....+|..+++.+.+.+.+.  .+|+..+++.+...++..+....+.++
T Consensus       344 ~~~~~~g~~~~~~~~g~l~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~  391 (399)
T PRK05122        344 SVFLDLSLGITGPLAGLVASW--FGYPSIFLAAALAALLGLALTWLLYRR  391 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH--cCHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            999999999999999999888  789999998888877766555555443

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=99.64  E-value=1.6e-15  Score=111.90  Aligned_cols=123  Identities=24%  Similarity=0.250  Sum_probs=101.1

Q ss_pred             CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHH
Q psy4740           2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFV   81 (147)
Q Consensus         2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~   81 (147)
                      +++.|+++|.+|||..++.+.++..++.++++.+  +|...++.+..+.|++.|.... ....++|..|.|.|+...++.
T Consensus        95 ~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA--~~~~~~iag~~l~GvgaG~~~~-~~~~isEl~p~k~R~~~~~~~  171 (599)
T PF06609_consen   95 FPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATA--QNMNTFIAGMVLYGVGAGVQEL-AALAISELVPNKWRGLGLAIA  171 (599)
T ss_pred             HHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcC--CcHHHHHHHHHHHHHhhHHHHH-HHHHHHHhcccchhhhHhHHH
Confidence            4788999999999999999999999999999999  9999999999999998776654 456689999999998888777


Q ss_pred             HhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhc
Q psy4740          82 FAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLC  129 (147)
Q Consensus        82 ~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (147)
                      ....-+....++.++..+..+  .+|||.|++..+...+..+...++.
T Consensus       172 ~~~~i~~~~~~~~ia~~~~~~--~~WRw~~~~~~i~~~i~~vl~~~fY  217 (599)
T PF06609_consen  172 SIPFIITTWISPLIAQLFAAH--SGWRWIFYIFIIWSGIALVLIFFFY  217 (599)
T ss_pred             HHHHHhhhcccHHHHHHhccC--CCcchHHHHHHHHHHHHHHHHHHHh
Confidence            665555555677777766555  6999999999888777655544443

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=99.64  E-value=6.1e-19  Score=127.35  Aligned_cols=131  Identities=24%  Similarity=0.366  Sum_probs=112.3

Q ss_pred             CCcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccc---cHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHH
Q psy4740           1 MHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQ---SANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKI   77 (147)
Q Consensus         1 ~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~   77 (147)
                      |+++.|.++||+|||+.+..+.++..++.++..++  +   +++.+.++|++.|++.|...+....++.|..|+++|+..
T Consensus        62 G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~R~~~  139 (451)
T PF00083_consen   62 GALIFGFLADRYGRKPALIISALLMIIGSILIAFA--PSYNNFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKHRGFL  139 (451)
T ss_pred             ccccccccccccccccccccccccccccccccccc--ccccccccccccccccccccccccccccccccccccccccccc
Confidence            56789999999999999999999999999999888  6   899999999999999999999999999999999999999


Q ss_pred             HHHHHhhhhhHHHHHHHHHHHHHhhcC-CChhHHHHHHHHHHHHHHHHHHhhccCCCC
Q psy4740          78 GSFVFAGNQIGTVFSSFLSGFLLKYTD-GDWPEIFYLFGILGVLWFVAWCFLCYNDPA  134 (147)
Q Consensus        78 ~~~~~~~~~~g~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (147)
                      .++.+....+|..++..++.......+ ..||..+.+..++.++..+ ...+.||+|+
T Consensus       140 ~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~~-~~~~~pESP~  196 (451)
T PF00083_consen  140 SSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLVLL-LRFFLPESPR  196 (451)
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccc
Confidence            999999999998888777655533321 4699999988888876444 4467788764

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.64  E-value=3.9e-15  Score=117.98  Aligned_cols=101  Identities=21%  Similarity=0.209  Sum_probs=87.6

Q ss_pred             CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhc-ccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHH
Q psy4740           2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFA-ARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSF   80 (147)
Q Consensus         2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~   80 (147)
                      ++++|+++||+|||++++++.++..+..++.... ...+++.+++.|++.|++.+...+...++++|++|+++|++++++
T Consensus        64 ~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~  143 (1146)
T PRK08633         64 SSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGL  143 (1146)
T ss_pred             hhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCcccchhhhhH
Confidence            5789999999999999998877665555544322 115788999999999999999999999999999999999999999


Q ss_pred             HHhhhhhHHHHHHHHHHHHHhh
Q psy4740          81 VFAGNQIGTVFSSFLSGFLLKY  102 (147)
Q Consensus        81 ~~~~~~~g~~~~~~~~~~l~~~  102 (147)
                      .....++|.++++.+++.+.+.
T Consensus       144 ~~~~~~ig~~lg~~l~~~l~~~  165 (1146)
T PRK08633        144 LEAFTIVAILAGTALFSFLFES  165 (1146)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999988765

>TIGR00901 2A0125 AmpG-related permease

Probab=99.63  E-value=6.5e-15  Score=103.54  Aligned_cols=129  Identities=18%  Similarity=0.175  Sum_probs=99.9

Q ss_pred             Ccchhhhhhhh-----cchHHH-HHHHHHHHHHHHHhhhccc-ccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcch
Q psy4740           2 HIPGGLLAQKF-----GGKHTL-GFGILSTAIFTLLTPFAAR-QSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTER   74 (147)
Q Consensus         2 ~~~~g~l~d~~-----gr~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r   74 (147)
                      ++++|.+.||+     ||||.+ +.+.+..++.....++..+ .+.+.+....++.+.+.+...+...+++.|++|+++|
T Consensus        38 ~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r  117 (356)
T TIGR00901        38 KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPSTDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEEL  117 (356)
T ss_pred             HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhh
Confidence            46789999998     888874 5566666666555555421 3445566666777887777788889999999999999


Q ss_pred             hHHHHHHHhhhhhHHHHHHHHHHHHHhhcCCC--------hhHHHHHHHHHHHHHHHHHHhhccCC
Q psy4740          75 GKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGD--------WPEIFYLFGILGVLWFVAWCFLCYND  132 (147)
Q Consensus        75 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (147)
                      +++.++.....++|..+++.+++.+.+.  .+        ||..|++.++..++..+..++..||.
T Consensus       118 ~~~~~~~~~~~~~G~~~~~~l~~~l~~~--~g~~~~~~~~wr~~f~i~ai~~l~~~~~~~~~~~e~  181 (356)
T TIGR00901       118 GYGSTIYIVGYRAGMLLSGSLALVLASP--EFANTGLITLWGYIFFWTALLILPGLLVTLFLAKEP  181 (356)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHhhh--cccccccccccHHHHHHHHHHHHHHHHHHHHhccCC
Confidence            9999999999999999999999988877  45        99999998887776555544445553

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.63  E-value=4.1e-15  Score=105.59  Aligned_cols=99  Identities=16%  Similarity=0.146  Sum_probs=90.7

Q ss_pred             CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHH
Q psy4740           2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFV   81 (147)
Q Consensus         2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~   81 (147)
                      +++.|+++||+|||+.+..+.++..+++..+...  ++++.+++.|++.|++.+...+.....+.+..++++|++.++.+
T Consensus        58 ~~~~g~l~dr~g~k~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (381)
T PRK03633         58 TLLAGYVIKRIGFNRSYYLASLIFAAGCAGLGLM--VGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAY  135 (381)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            5789999999999999999999999999888887  88999999999999999988888888888889999999999999


Q ss_pred             HhhhhhHHHHHHHHHHHHHhh
Q psy4740          82 FAGNQIGTVFSSFLSGFLLKY  102 (147)
Q Consensus        82 ~~~~~~g~~~~~~~~~~l~~~  102 (147)
                      ....++|..++|.+++.+.+.
T Consensus       136 ~~~~~~g~~~g~~~~~~l~~~  156 (381)
T PRK03633        136 MMVYYLGTVLGQLLVSKVSTE  156 (381)
T ss_pred             HHHHHHHHHHHHHHHhccccc
Confidence            999999999999999988665

>PTZ00207 hypothetical protein; Provisional

Probab=99.62  E-value=5.7e-15  Score=109.28  Aligned_cols=128  Identities=12%  Similarity=0.087  Sum_probs=105.1

Q ss_pred             CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhccc----ccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHH
Q psy4740           2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAAR----QSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKI   77 (147)
Q Consensus         2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~   77 (147)
                      +++.|+++||+|||+++.++.++..++.++++++.+    .+++.+.+.|++.|++.+...+.....+.+++| ++||++
T Consensus        78 ~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a  156 (591)
T PTZ00207         78 LLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAV  156 (591)
T ss_pred             HHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHH
Confidence            457899999999999999999999999998887521    478889999999999999888888889999996 789999


Q ss_pred             HHHHHhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhccCCC
Q psy4740          78 GSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDP  133 (147)
Q Consensus        78 ~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (147)
                      .++.....++|..+.+.+...+...   +|+..|++.+++.++..+....+.++.|
T Consensus       157 ~Gi~~~~~gLGsaI~~~l~~~l~~~---~~~~~fl~l~vl~~vv~ll~~~~vr~p~  209 (591)
T PTZ00207        157 VAIMKTFTGLGSAILGSIQLAFFSD---NTSAYFFFLMSFALVVGILAIVFMRLPP  209 (591)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHHhheeCCc
Confidence            9999999999997655555444444   6888888888888877777666665543

>PRK10133 L-fucose transporter; Provisional

Probab=99.62  E-value=1e-14  Score=105.40  Aligned_cols=97  Identities=19%  Similarity=0.161  Sum_probs=86.3

Q ss_pred             CcchhhhhhhhcchHHHHHHHHHHHHHHHHhh---hcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHH
Q psy4740           2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTP---FAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIG   78 (147)
Q Consensus         2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~   78 (147)
                      +++.|++.||+|||+++..+..+.+++++++.   ..  ++++.+++.|++.|++.+...+..+.++.|..|+++|...+
T Consensus        78 ~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~~~~a--~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~  155 (438)
T PRK10133         78 PIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEI--MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRL  155 (438)
T ss_pred             HHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHH
Confidence            57889999999999999999999999998753   34  78999999999999999999999999999987777777789


Q ss_pred             HHHHhhhhhHHHHHHHHHHHHH
Q psy4740          79 SFVFAGNQIGTVFSSFLSGFLL  100 (147)
Q Consensus        79 ~~~~~~~~~g~~~~~~~~~~l~  100 (147)
                      +..+....+|..+++.+++.+.
T Consensus       156 s~~~~~~~~G~~~g~~~g~~l~  177 (438)
T PRK10133        156 NLAQTFNSFGAIIAVVFGQSLI  177 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999987654

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.62  E-value=1.1e-14  Score=106.57  Aligned_cols=128  Identities=18%  Similarity=0.253  Sum_probs=103.5

Q ss_pred             Ccchhhhhhhh-----cchHH-HHHHHHHHHHHHHHhhhcc-cccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcch
Q psy4740           2 HIPGGLLAQKF-----GGKHT-LGFGILSTAIFTLLTPFAA-RQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTER   74 (147)
Q Consensus         2 ~~~~g~l~d~~-----gr~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r   74 (147)
                      ++++|.++||+     |||+. +..+.+..+++...+++.. .++++.+.+.+++.+++.+...+...++..|++|+++|
T Consensus        62 ~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~r  141 (491)
T PRK11010         62 KFLWSPLMDRYTPPFLGRRRGWLLATQLLLLVAIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEER  141 (491)
T ss_pred             HHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhh
Confidence            46899999999     99886 5566666666666665542 24677888899999998888888899999999999999


Q ss_pred             hHHHHHHHhhhhhHHHHHHHHHHHHHh-hcCCChhHHHHHHHHHHHHHHHHHHhhccCC
Q psy4740          75 GKIGSFVFAGNQIGTVFSSFLSGFLLK-YTDGDWPEIFYLFGILGVLWFVAWCFLCYND  132 (147)
Q Consensus        75 ~~~~~~~~~~~~~g~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (147)
                      +++.++......+|..+++.+...+.+ .  .+||..|++.++..++..+..+ ..||+
T Consensus       142 g~~~~i~~~g~~lG~llg~~l~~~l~~~~--~GWr~~f~i~a~l~ll~~l~~~-~~~e~  197 (491)
T PRK11010        142 GAGAAISVLGYRLAMLVSGGLALWLADRY--LGWQGMYWLMAALLIPCIIATL-LAPEP  197 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcc--cCHHHHHHHHHHHHHHHHHHHH-hcCCC
Confidence            999999999999999999999998887 4  5999999998887766544444 35554

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.61  E-value=2.2e-14  Score=102.33  Aligned_cols=127  Identities=16%  Similarity=0.043  Sum_probs=92.5

Q ss_pred             chhhhhhhhcchHHHH-HHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchh--HHHHH
Q psy4740           4 PGGLLAQKFGGKHTLG-FGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERG--KIGSF   80 (147)
Q Consensus         4 ~~g~l~d~~gr~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~--~~~~~   80 (147)
                      +.+.++||+|||+.++ .+.+..++...+..+.  ++++.+++.+.+.+...+...+....+..|..+++.|.  ...+.
T Consensus        70 ~~~~~~dr~g~r~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (393)
T PRK15011         70 FLAGRSDKRGDRKSLIVFCCLLGVLACTLFAWN--RNYFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSF  147 (393)
T ss_pred             HHHHHHhcccchhHHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHH
Confidence            4444599999998754 4555555666666666  77777666665555545566777778888877766553  34467


Q ss_pred             HHhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhccCCCC
Q psy4740          81 VFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPA  134 (147)
Q Consensus        81 ~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (147)
                      .+...++|..++|.+++.+.++  .|||..|++.++..++..+......||.++
T Consensus       148 ~~~~~~lg~~~g~~i~~~l~~~--~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~  199 (393)
T PRK15011        148 LRAQVSLAWVIGPPLAYALAMG--FSFTVMYLSAAVAFIVCGVMVWLFLPSMRK  199 (393)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHh--cChHHHHHHHHHHHHHHHHHHHhhcCccCC
Confidence            8888999999999999999887  799999999888777766666666676543

>PRK12382 putative transporter; Provisional

Probab=99.59  E-value=1.7e-14  Score=102.62  Aligned_cols=123  Identities=25%  Similarity=0.248  Sum_probs=105.8

Q ss_pred             CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHH
Q psy4740           2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFV   81 (147)
Q Consensus         2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~   81 (147)
                      +++.|++.||+|+|+.+..+..+..++.......  ++....++..++.|++.+...+.....+.|.+|+++|++..++.
T Consensus       266 ~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~  343 (392)
T PRK12382        266 RVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLA--PTAWVALAGAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGY  343 (392)
T ss_pred             HHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHc--ccHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            4678999999999999998888888877776665  67777778889999988888888888899999999999999999


Q ss_pred             HhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhh
Q psy4740          82 FAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFL  128 (147)
Q Consensus        82 ~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (147)
                      +....+|..++|.+.+.+.++  .+|+..|.+.+...++..+..+..
T Consensus       344 ~~~~~~g~~ig~~~~g~l~~~--~g~~~~~~~~~~~~~~~~~~~~~~  388 (392)
T PRK12382        344 AAFQDIAYGVSGPLAGMLATS--FGYPSVFLAGAISAVLGIIVTILS  388 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH--hCchHHHHHHHHHHHHHHHHHHhh
Confidence            999999999999999999998  689999999888877766655544

>KOG0252|consensus

Probab=99.58  E-value=2.5e-15  Score=106.51  Aligned_cols=134  Identities=22%  Similarity=0.311  Sum_probs=104.4

Q ss_pred             CCcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccc-----cHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchh
Q psy4740           1 MHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQ-----SANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERG   75 (147)
Q Consensus         1 ~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~   75 (147)
                      ||++.|+++||+|||+++...+++..++++++++...+     -..++...|+++|+|.|+.+|.+.+..+|...++.||
T Consensus       100 GQl~FG~lgD~~GRK~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RG  179 (538)
T KOG0252|consen  100 GQLFFGWLGDKFGRKKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRG  179 (538)
T ss_pred             HHHHHHHHHhhhcchhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhcccc
Confidence            58899999999999999999999999999877665211     2457778999999999999999999999999999999


Q ss_pred             HHHHHHHhhhhhHHHHHHHHHHHHHhhc-------------CCChhHHHHHHHHHHHHHHHHHHhhccCCCCC
Q psy4740          76 KIGSFVFAGNQIGTVFSSFLSGFLLKYT-------------DGDWPEIFYLFGILGVLWFVAWCFLCYNDPAS  135 (147)
Q Consensus        76 ~~~~~~~~~~~~g~~~~~~~~~~l~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (147)
                      ...+.+.+..+.|...|..+.-.+..-+             +.-||..+.+..++.+. .+...+..||+++.
T Consensus       180 a~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~-~ly~Rl~M~Et~~Y  251 (538)
T KOG0252|consen  180 AFIAAVFAMQGFGILAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALL-VLYFRLKMPETARY  251 (538)
T ss_pred             ceeEEEEEecchhHhhccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHH-HHHhhhcCCcchhH
Confidence            9999877777777666655554443211             12589888887777765 45556667776543

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.58  E-value=2.2e-14  Score=102.32  Aligned_cols=123  Identities=20%  Similarity=0.222  Sum_probs=104.6

Q ss_pred             cchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHHH
Q psy4740           3 IPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVF   82 (147)
Q Consensus         3 ~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~   82 (147)
                      +..|+++||+|||+.+..+.....+........  ++.+.+++.+++.|++.+...+.....+.+..|+++|++.++..+
T Consensus       276 ~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  353 (408)
T PRK09874        276 PRLGKLGDRIGPEKILITALIFSVLLLIPMSFV--QTPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQ  353 (408)
T ss_pred             HHHHHHHhccccchhHHHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHH
Confidence            457899999999999998888777766666555  667777888899999999988888889999999999999999999


Q ss_pred             hhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhc
Q psy4740          83 AGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLC  129 (147)
Q Consensus        83 ~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (147)
                      ....+|..++|.+++.+.+.  .+|+..|++.+++.++..+......
T Consensus       354 ~~~~~g~~~gp~~~G~l~~~--~g~~~~f~~~~~~~l~~~~~~~~~~  398 (408)
T PRK09874        354 SFRDIGNVTGPLMGAAISAN--YGFRAVFLVTAGVVLFNAVYSWNSL  398 (408)
T ss_pred             HHHHHHHHhhHHHHHHHHhh--cchhHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999888  7899999999888777666555443

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.58  E-value=8.7e-15  Score=105.12  Aligned_cols=129  Identities=16%  Similarity=0.149  Sum_probs=106.1

Q ss_pred             CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHH-
Q psy4740           2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSF-   80 (147)
Q Consensus         2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-   80 (147)
                      ++++|++.||+|+|+.+..+.++..+...+.++.  ++.+.+++.+++.|++.+...+....++.|.+|++.|+...+. 
T Consensus       279 ~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~--~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~  356 (420)
T PRK09528        279 MFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFA--TGPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVG  356 (420)
T ss_pred             HHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhc--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccceeeeeeeh
Confidence            4678999999999999998888888887777776  7788888889999888777777777889999999999887665 


Q ss_pred             HHhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhccCCCC
Q psy4740          81 VFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPA  134 (147)
Q Consensus        81 ~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (147)
                      ++...++|..++|.+.+.+.+.  .||+..|.+.+++.++..+......+++++
T Consensus       357 ~~~~~~lg~~ig~~~~G~l~~~--~G~~~~f~~~~~~~~i~~~~~~~~~~~~~~  408 (420)
T PRK09528        357 FQFAKQLGAVFLSTLAGNLYDS--IGFQGTYLILGGIVLLFTLISVFTLSGDRE  408 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHh--hCchHHHHHHHHHHHHHHHHHHHHhcCCch
Confidence            5677889999999999999998  689999998888877666665555555443

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.58  E-value=1.8e-14  Score=101.04  Aligned_cols=129  Identities=18%  Similarity=0.256  Sum_probs=111.6

Q ss_pred             cchhhhhhhhcchHHHHHHHHHHHHHHHHhhhccc-ccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHH
Q psy4740           3 IPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAAR-QSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFV   81 (147)
Q Consensus         3 ~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~   81 (147)
                      ++.|.+.||+|.|++..++.++..+.++....+.+ ++++.+++++.+.|++ |..+......+++++|++++|.++|+.
T Consensus        67 l~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~~~~~~~ll~~gll~G~~-GasFav~m~~~s~~fP~~~qG~AlGI~  145 (417)
T COG2223          67 LPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYPSTWQLLVIGLLLGLA-GASFAVGMPNASFFFPKEKQGLALGIA  145 (417)
T ss_pred             HHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHhcc-cceehcccccccccCChhhhhHHHHHh
Confidence            56789999999999999999999999998888732 3556999999999996 456777899999999999999999999


Q ss_pred             HhhhhhHHHHHHHHHHHHHhhcCCC---hhHHHHHHHHHHHHHHHHHHhhccCCCCC
Q psy4740          82 FAGNQIGTVFSSFLSGFLLKYTDGD---WPEIFYLFGILGVLWFVAWCFLCYNDPAS  135 (147)
Q Consensus        82 ~~~~~~g~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (147)
                      . ..|+|..+...++..+...  .+   |+....+..+..++..+..++...|.|+.
T Consensus       146 g-~GN~G~av~q~~~P~v~~~--~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~  199 (417)
T COG2223         146 G-AGNLGVAVAQLVAPLVAVA--FGFLAWRNVAGIYVVALAIAAVLAWLGMNDVPEH  199 (417)
T ss_pred             c-cccccHHHHHHHHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHHHHHHhCCChhh
Confidence            9 8999999998888888877  56   99999999888888888888888887763

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.58  E-value=6.2e-14  Score=102.66  Aligned_cols=132  Identities=12%  Similarity=0.112  Sum_probs=92.0

Q ss_pred             CcchhhhhhhhcchHHHHHHHHHHHHHHHH-hhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHH
Q psy4740           2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLL-TPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSF   80 (147)
Q Consensus         2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~   80 (147)
                      ++..|+++||+|||+.+..+.+...+.... ......++...+++.+++.|++.+...+....++.|.+|++.|+++++.
T Consensus       303 ~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~  382 (490)
T PRK10642        303 QPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAA  382 (490)
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHH
Confidence            356899999999999988776654433322 2112124566677788888877666666778888999999999999998


Q ss_pred             HHhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhccCCCCC
Q psy4740          81 VFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPAS  135 (147)
Q Consensus        81 ~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (147)
                      .+....+++.++|.+.+.+.+.. .+|+..++...++.++..+.. ++.||+|+.
T Consensus       383 ~~~~~~~~g~~~p~i~g~l~~~~-~~~~~~~~~~~~~~~i~~~~~-~~~pes~~~  435 (490)
T PRK10642        383 AFNISVLVAGLTPTLAAWLVEST-QNLMMPAYYLMVVAVIGLITG-VTMKETANR  435 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHh-CCchHHHHHHHHHHHHHHHHH-HHhccccCC
Confidence            65556677788999999887753 256766666555555544443 455777654

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.56  E-value=8.2e-14  Score=99.61  Aligned_cols=129  Identities=14%  Similarity=0.128  Sum_probs=100.8

Q ss_pred             Ccchhhhhhhh-----cchH-HHHHHHHHHHHHHHHhhhccc-ccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcch
Q psy4740           2 HIPGGLLAQKF-----GGKH-TLGFGILSTAIFTLLTPFAAR-QSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTER   74 (147)
Q Consensus         2 ~~~~g~l~d~~-----gr~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r   74 (147)
                      ++++|+++||+     |||| .+.++.+..++......+..+ .+.+.+.+..++.+...+...+...+++.|++|+++|
T Consensus        49 ~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r  128 (402)
T PRK11902         49 KFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAMAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEER  128 (402)
T ss_pred             HHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhh
Confidence            57899999999     7765 677777777776666665522 3466677777777888888888999999999999999


Q ss_pred             hHHHHHHHhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhccCC
Q psy4740          75 GKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYND  132 (147)
Q Consensus        75 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (147)
                      +++.++.....++|..+++.+...+.+.. .+||..|++.++..++..+. .+..||+
T Consensus       129 ~~~~~~~~~g~~~g~i~g~~l~~~l~~~~-~gw~~~f~i~a~~~l~~~l~-~~~~~e~  184 (402)
T PRK11902        129 GAGAAVKVLGYRLAMLVSGGLALWLADRV-LGWGNTYLLMAGLMLAGALT-TLWAPEP  184 (402)
T ss_pred             hHHHHHHHHHHHHHHHHHhHHHHHHHhcc-cCHHHHHHHHHHHHHHHHHH-HHhcCCC
Confidence            99999999999999999999998887741 48999999988876654443 3344443

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.53  E-value=1.1e-13  Score=99.40  Aligned_cols=134  Identities=15%  Similarity=-0.038  Sum_probs=105.5

Q ss_pred             CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHH
Q psy4740           2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFV   81 (147)
Q Consensus         2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~   81 (147)
                      .++.+++.||.++++.+..+.+...++.......  ++.....+..++.|++.+...+...+++.|..|++.|++..+++
T Consensus       276 ~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~  353 (417)
T PRK10489        276 ALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLM--PMWILAVLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLW  353 (417)
T ss_pred             HHHHHHhhhccCcchHHHHHHHHHHHHHHHHHcc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHH
Confidence            3567889999888888887777777776666555  66666677788888887776677778899999999999999999


Q ss_pred             HhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhccCCCCCCCCC
Q psy4740          82 FAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPASHPYI  139 (147)
Q Consensus        82 ~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (147)
                      +....+|..++|.+.+.+.+.  .+++..+...++..++..+......++.++.++++
T Consensus       354 ~~~~~~g~~~g~~l~G~l~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  409 (417)
T PRK10489        354 TAQNVTGDAIGAALLGGLGAM--MTPVASASASGFGLLIIGVLLLLVLGELRRFRQTP  409 (417)
T ss_pred             HHHHhhhHhHHHHHHHHHHHH--hchhhHHHHHHHHHHHHHHHHHHhccccccccccc
Confidence            999999999999999999988  68888888777777666666666666655544433

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.52  E-value=1.2e-13  Score=97.11  Aligned_cols=117  Identities=15%  Similarity=0.186  Sum_probs=96.2

Q ss_pred             CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHH
Q psy4740           2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFV   81 (147)
Q Consensus         2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~   81 (147)
                      +++.|++.||+|||+.+..+.....++.......+..+...++...++.+++.+...+....++.|.+|+++|++..++.
T Consensus       257 ~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~  336 (377)
T TIGR00890       257 RPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVALVFFTWGGTISLFPSLVSDIFGPANSAANYGFL  336 (377)
T ss_pred             HHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhccchhccHHHHHHHhhhhhhhhHhHHH
Confidence            46789999999999999988888888877766552222233445567778888877777888999999999999999999


Q ss_pred             HhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHH
Q psy4740          82 FAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVL  120 (147)
Q Consensus        82 ~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  120 (147)
                      +....+|..++|.+.+.+.+.  .+|+..|.+.+++.++
T Consensus       337 ~~~~~~g~~~~~~~~g~l~~~--~g~~~~f~~~~~~~~~  373 (377)
T TIGR00890       337 YTAKAVAGIFGGLIASHALTE--IGFEYTFIVTGAFALT  373 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHhh--hchhhHHHHHHHHHHH
Confidence            999999999999999999888  7899999888776654

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.50  E-value=3e-13  Score=94.09  Aligned_cols=120  Identities=30%  Similarity=0.522  Sum_probs=107.5

Q ss_pred             CcchhhhhhhhcchH-HHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHH
Q psy4740           2 HIPGGLLAQKFGGKH-TLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSF   80 (147)
Q Consensus         2 ~~~~g~l~d~~gr~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~   80 (147)
                      +++.+++.||+|||+ .+..+..+..++.......  ++.+...+..++.|++.+...+....++.|..|+++|++.++.
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (352)
T cd06174         228 ALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALA--PSLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGL  305 (352)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHH
Confidence            456789999999999 9999999988888888777  6778888999999999999999999999999999999999999


Q ss_pred             HHhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHH
Q psy4740          81 VFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAW  125 (147)
Q Consensus        81 ~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (147)
                      .+...+++..+++.+.+.+.+.  .+|+..+++.+++.++..+..
T Consensus       306 ~~~~~~~~~~i~~~i~g~l~~~--~~~~~~~~~~~~~~~i~~i~~  348 (352)
T cd06174         306 FNTFGSLGGALGPLLAGLLLDT--GGYGGVFLILAALALLAALLL  348 (352)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcc--cCcchHHHHHHHHHHHHHHHh
Confidence            9999999999999999999887  689999999888887755544

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.49  E-value=5.2e-13  Score=95.37  Aligned_cols=124  Identities=16%  Similarity=0.054  Sum_probs=95.6

Q ss_pred             CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHH
Q psy4740           2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFV   81 (147)
Q Consensus         2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~   81 (147)
                      +++.|++.||+|||+.+....+...++.......  ++...+.+..++.|++.+...+....++.|.+|+++|++..++.
T Consensus       272 ~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~  349 (406)
T PRK11551        272 SLLIGALMDRLRPRRVVLLIYAGILASLAALAAA--PSFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAA  349 (406)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhc--CcHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHH
Confidence            4578999999999999887666666655555544  56666666777788877777788888999999999999999999


Q ss_pred             HhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhh
Q psy4740          82 FAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFL  128 (147)
Q Consensus        82 ~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (147)
                      +....+|..++|.+.+.+.+.. .+|...++......++..+..+..
T Consensus       350 ~~~~~~g~~~g~~~~g~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  395 (406)
T PRK11551        350 VAVGRLGSMAGPLLAGQLLALG-RSTVGVIGASIPVILVAALAALLL  395 (406)
T ss_pred             HHhhhHHHHHHhhhHhhhhccC-CchHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999998763 356666666666655544444433

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.48  E-value=4.8e-13  Score=96.61  Aligned_cols=130  Identities=19%  Similarity=0.178  Sum_probs=94.9

Q ss_pred             CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhh---cccc------cHHHHHHHHHHHhhccccCcccHHHHhhhhcCCc
Q psy4740           2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPF---AARQ------SANWLIALRFFEGLGEGTTFPALNTLLAQWVPPT   72 (147)
Q Consensus         2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~---~~~~------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~   72 (147)
                      +++.|+++||+|||+.+..+.++.+++......   ...+      +...+....++.+.......+....++.|.+|++
T Consensus       336 ~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~  415 (481)
T TIGR00879       336 TFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLS  415 (481)
T ss_pred             HHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChH
Confidence            456799999999999998887777777666542   1111      2222223333333322333466677789999999


Q ss_pred             chhHHHHHHHhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhccCCC
Q psy4740          73 ERGKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDP  133 (147)
Q Consensus        73 ~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (147)
                      +|++++++.+...++|..++|.+.+.+.++  .+|++.|++.+++.++..+...++.||++
T Consensus       416 ~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~--~~~~~~f~~~~~~~~~~~i~~~~~~~~~~  474 (481)
T TIGR00879       416 LRPKGISIAVAANWLANFIVGFLFPTMLES--IGVGGVFIFFGGLNVLGLIFVYFFLPETK  474 (481)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCccceehhHHHHHHHHHHHHheecccCC
Confidence            999999999999999999999999999888  68999999888887776666666666544

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.48  E-value=2.7e-13  Score=98.76  Aligned_cols=127  Identities=17%  Similarity=0.135  Sum_probs=86.9

Q ss_pred             CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHH
Q psy4740           2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFV   81 (147)
Q Consensus         2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~   81 (147)
                      ++.+|+++||+|||+.+........+..........++.....+..++.|+..............|.+|++.|+++.|+.
T Consensus       311 ~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~  390 (467)
T PRK09556        311 SLLWGWLSDLANGRRALVACIALALIIFTLGVYQHATSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIK  390 (467)
T ss_pred             HHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHH
Confidence            46789999999999877655444333322222221245555667777777643332223345677999999999999999


Q ss_pred             Hhhhhh-HHHHHHHHHHHHHhh----------cCCChhHHHHHHHHHHHHHHHHHHhh
Q psy4740          82 FAGNQI-GTVFSSFLSGFLLKY----------TDGDWPEIFYLFGILGVLWFVAWCFL  128 (147)
Q Consensus        82 ~~~~~~-g~~~~~~~~~~l~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (147)
                      +...++ |..++|.+.|.+.+.          ...+|+..|++..+..++..+...++
T Consensus       391 ~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~  448 (467)
T PRK09556        391 GTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMAIV  448 (467)
T ss_pred             HHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHHHHHHHH
Confidence            998886 779999999999981          01579999988877776655554433

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.48  E-value=7.1e-13  Score=94.57  Aligned_cols=121  Identities=12%  Similarity=0.219  Sum_probs=93.2

Q ss_pred             CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHH
Q psy4740           2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFV   81 (147)
Q Consensus         2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~   81 (147)
                      .++.|+++||+|||+.+..+.....+........  ++++..++.+++.++..+...+....+..|.+|+ +|+++.+++
T Consensus       269 ~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~l~~~~~g~~~~~~~~~~~~~~p~-~~g~~~~~~  345 (393)
T PRK15011        269 MLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMA--HSPAILLGLQLLNAIYIGILGGIGMLYFQDLMPG-QAGSATTLY  345 (393)
T ss_pred             HHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CcchHHHHH
Confidence            3578999999999998877665555544444334  5666677777777776666666667778898875 599999999


Q ss_pred             HhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHh
Q psy4740          82 FAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCF  127 (147)
Q Consensus        82 ~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (147)
                      +...++|..++|.+++.+.+.  .+|+..|++..+..++..+..+.
T Consensus       346 ~~~~~lg~~~g~~l~G~i~~~--~g~~~~~~~~~~~~~~~~~~~~~  389 (393)
T PRK15011        346 TNTSRVGWIIAGSLAGIVAEI--WNYHAVFWFALVMIIATLFCLLR  389 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHh
Confidence            998999999999999999998  68999998887777665555443

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.48  E-value=1e-12  Score=93.47  Aligned_cols=112  Identities=17%  Similarity=-0.002  Sum_probs=83.9

Q ss_pred             Ccchhhhhhhhcch----HHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHH
Q psy4740           2 HIPGGLLAQKFGGK----HTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKI   77 (147)
Q Consensus         2 ~~~~g~l~d~~gr~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~   77 (147)
                      ++++|.+.||+||+    +.+........  .......  ++++.+++.|++.|++.+...+...+...++  +++|++.
T Consensus        56 ~~~~g~l~dr~g~~~~~~~~~~~~~~~~~--~~~~~~~--~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a  129 (382)
T PRK11128         56 SLLIAPRVKDPSQLIPALRLLALLTLLFA--VAFWFGA--HSFWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQIGLD  129 (382)
T ss_pred             hHHHHHHHhhhcchHHHHHHHHHHHHHHH--HHHHHhc--ccHHHHHHHHHHHHHHHcccccHHHHHHHHH--HhhccCC
Confidence            57789999999984    33322222211  1122223  6788888999999999888888888777776  4567888


Q ss_pred             HHHHHhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHH
Q psy4740          78 GSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLW  121 (147)
Q Consensus        78 ~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  121 (147)
                      .+......++|..++|.+++.+.++  .+||..|++.++..++.
T Consensus       130 ~~~~~~~~~lg~~igp~lgg~l~~~--~g~~~~f~~~~~~~~~~  171 (382)
T PRK11128        130 YGKVRLWGSIAFVIGSALTGKLVSW--FGEQAILWILTAGVASM  171 (382)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHH--cChhHHHHHHHHHHHHH
Confidence            8888888899999999999999998  79999998877655443

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.47  E-value=4.1e-13  Score=98.76  Aligned_cols=125  Identities=20%  Similarity=0.273  Sum_probs=103.4

Q ss_pred             CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhc---ccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHH
Q psy4740           2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFA---ARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIG   78 (147)
Q Consensus         2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~   78 (147)
                      .+++|.++||++||++++.+-++.++........   ...+.+.+++..++.|++.+...|...+.+.|..|+++...+.
T Consensus        62 sl~aG~laDr~drrrili~~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~  141 (524)
T PF05977_consen   62 SLFAGALADRFDRRRILILSQLLRALVALLLAVLAFFGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAAN  141 (524)
T ss_pred             HHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHH
Confidence            4689999999999999999877766554443322   2246788888999999999999999999999999999999999


Q ss_pred             HHHHhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhh
Q psy4740          79 SFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFL  128 (147)
Q Consensus        79 ~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (147)
                      ++.....++...+||.++|.+...  .|-.+.|.+.++..++........
T Consensus       142 al~s~~~niar~iGPalgG~Lva~--~G~~~~f~inalsfl~~i~~l~~~  189 (524)
T PF05977_consen  142 ALNSISFNIARIIGPALGGILVAF--FGAAAAFLINALSFLISILALLRW  189 (524)
T ss_pred             HHHHHHHHHHHhccchHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHc
Confidence            999999999999999999999887  677888888877766654444433

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.47  E-value=5.1e-13  Score=95.30  Aligned_cols=126  Identities=14%  Similarity=0.076  Sum_probs=88.3

Q ss_pred             CcchhhhhhhhcchHHHHHHHHHHHHHHHHhh---hcc---cccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchh
Q psy4740           2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTP---FAA---RQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERG   75 (147)
Q Consensus         2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~---~~~---~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~   75 (147)
                      +++.|+++||+|||+.+..+....++......   ...   ........+.+++.|++.+...+....+..|..+  +++
T Consensus        55 ~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~  132 (396)
T TIGR00882        55 QPLFGLISDKLGLKKHLLWIISGLLVLFAPFFIYVFGPLLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSR--NSN  132 (396)
T ss_pred             HHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhh--hcc
Confidence            57899999999999999877666554433221   110   0122334566788888888888888777777533  334


Q ss_pred             HHHHHHHhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhccCC
Q psy4740          76 KIGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYND  132 (147)
Q Consensus        76 ~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (147)
                      ..++......++|..++|.+++.+.+.   +|+..|++.+...++..+..+...+++
T Consensus       133 ~~~g~~~~~~~~g~~~g~~~~g~l~~~---~~~~~f~~~~~~~~~~~~~~~~~~~~~  186 (396)
T TIGR00882       133 FEYGKARMFGCVGWALCASIAGILFSI---DPQIVFWLGSGFALILMLLLMFAKPKA  186 (396)
T ss_pred             cccchhhhhcccHHHHHHHHHhhhhcc---CchHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            566777778889999999999987654   899999998888777655554444443

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.44  E-value=2e-12  Score=92.00  Aligned_cols=111  Identities=17%  Similarity=-0.019  Sum_probs=83.7

Q ss_pred             CcchhhhhhhhcchHHHHHHHHH-HHHHHH-HhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHH
Q psy4740           2 HIPGGLLAQKFGGKHTLGFGILS-TAIFTL-LTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGS   79 (147)
Q Consensus         2 ~~~~g~l~d~~gr~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~   79 (147)
                      ++++|.++||+||+......... ..+... .....  ++++.+++.|.+.+.+.+...|...++..|.  +++|++.++
T Consensus        56 ~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~~~~~~g  131 (382)
T TIGR00902        56 GLFFAPLIKDANHIIIALRLLALASAIFAAAFSAGA--HNAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQFGLDYG  131 (382)
T ss_pred             HHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHHcCCCcc
Confidence            56789999999985433222111 111111 22234  7788899999999998888888888887665  477899999


Q ss_pred             HHHhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHH
Q psy4740          80 FVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILG  118 (147)
Q Consensus        80 ~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  118 (147)
                      ......++|..++|.+++.+.++  .+||..|++.....
T Consensus       132 ~~~~~~slG~~~g~~l~g~l~~~--~g~~~~f~~~~~~~  168 (382)
T TIGR00902       132 KVRLIGSAAFIIGSALFGGLIGM--FDEQNILAILTAGL  168 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH--cChhHHHHHHHHHH
Confidence            99999999999999999999998  79999988876553

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.44  E-value=1.4e-12  Score=95.47  Aligned_cols=115  Identities=14%  Similarity=0.163  Sum_probs=83.2

Q ss_pred             CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHH
Q psy4740           2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFV   81 (147)
Q Consensus         2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~   81 (147)
                      +++.|+++||+|||+.+..+..+..+..+........+.+......++.+.......+....++.|.+|+++|++.+++.
T Consensus       328 ~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  407 (496)
T PRK03893        328 CCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGANVWVLGLLLFFQQMLGQGISGLLPKLIGGYFDTEQRAAGLGFT  407 (496)
T ss_pred             HHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhcccchhhHHHHHhhCCHHHhhcccchh
Confidence            46789999999999998877766665554433332233333434444444333334556777899999999999999999


Q ss_pred             HhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHH
Q psy4740          82 FAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILG  118 (147)
Q Consensus        82 ~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  118 (147)
                      +....+|..++|.+.+.+.+.  .+|+..+...+...
T Consensus       408 ~~~~~~g~~lgp~l~g~l~~~--~g~~~~~~~~~~~~  442 (496)
T PRK03893        408 YNVGALGGALAPILGALIAQR--LDLGTALASLSFSL  442 (496)
T ss_pred             hhhhhHHHHHHHHHHHHHhcc--CChHHHHHHHHHHH
Confidence            999999999999999999988  68887776554443

>KOG2504|consensus

Probab=99.44  E-value=1.7e-12  Score=95.17  Aligned_cols=128  Identities=25%  Similarity=0.308  Sum_probs=113.0

Q ss_pred             CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHH-HHHhhccccCcccHHHHhhhhcCCcchhHHHHH
Q psy4740           2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALR-FFEGLGEGTTFPALNTLLAQWVPPTERGKIGSF   80 (147)
Q Consensus         2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~   80 (147)
                      .|+.+.+.||+|.|.+.+.|.++..++.++..++  ++.+.+++.. ++.|+|.+..+......+..+| +++|+.+.|+
T Consensus        98 gpl~s~l~~rfg~R~v~i~G~~v~~~g~~lssF~--~~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF-~kkR~lA~Gi  174 (509)
T KOG2504|consen   98 GPLVSALCNRFGCRTVMIAGGLVAALGLLLSSFA--TSLWQLYLTFGVIGGLGLGLIYLPAVVILGTYF-EKKRALATGI  174 (509)
T ss_pred             ccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHH--hhHHHHHHHHHHHhhccchhhhcchhhhhhhHh-HHHHHHHHhh
Confidence            5788999999999999999999999999999999  8887777666 8899999999999999999877 5899999999


Q ss_pred             HHhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhccCCCC
Q psy4740          81 VFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPA  134 (147)
Q Consensus        81 ~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (147)
                      ...+..+|..+-|.+...+.+.  .|||+.+++.+.+.+-.+.......|..++
T Consensus       175 a~~GsG~G~~~~~~l~~~l~~~--~G~r~~~l~~~~~~l~~~~~~~~~rp~~~~  226 (509)
T KOG2504|consen  175 AVSGTGVGTVVFPPLLKYLLSK--YGWRGALLIFGGISLNVLVAGALLRPLSPP  226 (509)
T ss_pred             hhccCCcceeeHHHHHHHHHHH--hCcHHHHHHHHHHHHHHHHHHHHcCCCCcC
Confidence            9999999999999999999988  899999999988887767777766664433

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.44  E-value=8.2e-13  Score=96.22  Aligned_cols=132  Identities=19%  Similarity=0.125  Sum_probs=93.1

Q ss_pred             CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhccccc--HHHHHHHHHHHhhccccC-cccHHHHhhhhcCCcchhHHH
Q psy4740           2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQS--ANWLIALRFFEGLGEGTT-FPALNTLLAQWVPPTERGKIG   78 (147)
Q Consensus         2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~~~~~~r~~~~   78 (147)
                      .++.++++||+|||+.+..+.++.+++.+.+.....++  ........++.+.+.+.. .+....+++|.+|+++|+.++
T Consensus       323 ~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~  402 (479)
T PRK10077        323 TVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKAL  402 (479)
T ss_pred             HHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhccccchhHHHhHhhCChhHHHHHH
Confidence            35678999999999999999888888777664331111  112223334444444332 366789999999999999999


Q ss_pred             HHHHhhhhhHHHHHHHHHHHHH------hhcCCChhHHHHHHHHHHHHHHHHHHhhccCCCCC
Q psy4740          79 SFVFAGNQIGTVFSSFLSGFLL------KYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPAS  135 (147)
Q Consensus        79 ~~~~~~~~~g~~~~~~~~~~l~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (147)
                      ++.+....++..+++.+...+.      +.  .+|+..|++.+...++..+..+++.||++++
T Consensus       403 g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~  463 (479)
T PRK10077        403 AIAVAAQWIANYFVSWTFPMMDKNSWLVAH--FHNGFSYWIYGCMGVLAALFMWKFVPETKGK  463 (479)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHhccchhhh--ccCccHHHHHHHHHHHHHHHHHhccccCCCC
Confidence            9999999999988876665443      33  5788888888877776666666666665543

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.43  E-value=1.9e-12  Score=91.29  Aligned_cols=119  Identities=13%  Similarity=0.206  Sum_probs=94.3

Q ss_pred             cchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHHH
Q psy4740           3 IPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVF   82 (147)
Q Consensus         3 ~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~   82 (147)
                      ++.|++.||+|||+.+.++.+...+........  ++.+..++.+++.|++.+...+....++.|..|+ ++++..++++
T Consensus       253 ~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~  329 (375)
T TIGR00899       253 LLAGYLIKRFGKRRLMLLAALAGVAFYTGLAAD--NSLWALLMLQLLNAIFIGILAGIGMLYFQDLMPG-RAGAATTLYT  329 (375)
T ss_pred             HhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc-hhhHHHHHHH
Confidence            567899999999999887766655554444444  5666677778888888887777778888998875 5679999999


Q ss_pred             hhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHH
Q psy4740          83 AGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWC  126 (147)
Q Consensus        83 ~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (147)
                      ...++|..++|.+.+.+.+.  .+|+..|++.++..++..+...
T Consensus       330 ~~~~~g~~~g~~~~g~~~~~--~g~~~~~~~~~~~~~~~~~~~~  371 (375)
T TIGR00899       330 NTGRVGWIIAGSVGGILAER--WSYHAVYWFAIVMLIVALFCLL  371 (375)
T ss_pred             HHHHHHHHHHHHHHHHHHHh--ccchhHHHHHHHHHHHHHHHHh
Confidence            99999999999999999888  6899999988887766555543

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK03545 putative arabinose transporter; Provisional

Probab=99.43  E-value=5e-12  Score=90.05  Aligned_cols=123  Identities=17%  Similarity=0.058  Sum_probs=93.7

Q ss_pred             CcchhhhhhhhcchHHHHHHHHHHHHHHHHh-hhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHH
Q psy4740           2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLT-PFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSF   80 (147)
Q Consensus         2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~   80 (147)
                      +++.|+++||++||+.+. +..+..+..... ...  ++.+.+++..++.|++.....+.....+.|..| ++|+++++.
T Consensus       258 ~~~~g~l~dr~~~~~~~~-~~~~~~~~~~~l~~~~--~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~  333 (390)
T PRK03545        258 SVLFSRLGNRHPSGFLLI-AIALLLVCLLLLLPAA--NSEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAP-DATDVAMAL  333 (390)
T ss_pred             HHHHHHHhhccchhHHHH-HHHHHHHHHHHHHHHh--chHHHHHHHHHHHHHHHhcchHHHHHHHHHhCC-CcHHHHHHH
Confidence            467899999999886543 444333333322 333  566777778888888877766767778888766 688999999


Q ss_pred             HHhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhcc
Q psy4740          81 VFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCY  130 (147)
Q Consensus        81 ~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (147)
                      ++....+|..+||.+++.+.++  .+++..|++.+.+.++..+......+
T Consensus       334 ~~~~~~~g~~~G~~~~G~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~  381 (390)
T PRK03545        334 FSGIFNIGIGAGALLGNQVSLH--LGLSSIGYVGAALALAALVWSILIFR  381 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhc--cChhHHHHHHHHHHHHHHHHHHHHcc
Confidence            9999999999999999999998  79999999998888776666655544

>PRK09952 shikimate transporter; Provisional

Probab=99.42  E-value=4.2e-12  Score=91.89  Aligned_cols=125  Identities=13%  Similarity=0.147  Sum_probs=89.3

Q ss_pred             cchhhhhhhhcchHHHHHHHHHHHHHHHHhhhc--ccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHH
Q psy4740           3 IPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFA--ARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSF   80 (147)
Q Consensus         3 ~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~   80 (147)
                      +..|+++||+|||+.+..+.++..+........  ..++....++..++.+++.+...+....++.|.+|++.|+.+.++
T Consensus       304 ~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~  383 (438)
T PRK09952        304 PCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASYRYSGAGV  383 (438)
T ss_pred             HHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcchhHHHHhH
Confidence            467999999999999888766655544333221  112333444455666777777777788999999999999999998


Q ss_pred             HHh-hhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHh
Q psy4740          81 VFA-GNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCF  127 (147)
Q Consensus        81 ~~~-~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (147)
                      .+. ...+++.++|.+.+.+.+.++.+|...+...+...++..+..+.
T Consensus       384 ~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~  431 (438)
T PRK09952        384 GYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALL  431 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHH
Confidence            554 45589999999999998864346888777777776665555443

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=99.42  E-value=1.7e-12  Score=93.13  Aligned_cols=126  Identities=22%  Similarity=0.303  Sum_probs=108.0

Q ss_pred             Ccchhhhhhhh-cchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCc--chhHHH
Q psy4740           2 HIPGGLLAQKF-GGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPT--ERGKIG   78 (147)
Q Consensus         2 ~~~~g~l~d~~-gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~--~r~~~~   78 (147)
                      ..++||++||+ |+|+++..+.++.+++.+..+.....+...++++..+.++|.|..-+...+++.|.+|++  +|...+
T Consensus        78 ~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gF  157 (498)
T COG3104          78 PIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGF  157 (498)
T ss_pred             HHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCc
Confidence            35789999995 999999999999999999887762125677888888899999999999999999999764  578888


Q ss_pred             HHHHhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhc
Q psy4740          79 SFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLC  129 (147)
Q Consensus        79 ~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (147)
                      ++.++..++|+.++|.+.+.+.+.  .+|...|...++-.....+..+...
T Consensus       158 t~fY~~iNiGsl~~p~i~~~~~~~--~g~~~gF~~aavGm~~gl~~f~~~~  206 (498)
T COG3104         158 TLFYMGINIGSLIAPIITGLLAIN--YGWHVGFGLAAVGMIIGLVIFLLGR  206 (498)
T ss_pred             cEEEEEeehHHHHHHHHHHHHHHh--hCHHHHHHHHHHHHHHHHHHHHHcc
Confidence            999999999999999999999998  7999999998888877655555443

>TIGR00898 2A0119 cation transport protein

Probab=99.40  E-value=3.2e-12  Score=93.80  Aligned_cols=127  Identities=20%  Similarity=0.151  Sum_probs=95.0

Q ss_pred             cchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHHH
Q psy4740           3 IPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVF   82 (147)
Q Consensus         3 ~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~   82 (147)
                      +..+++.||+|||+.+..+.++.+++.+........+.....+..++.+.+.+..++....+.+|.+|++.|+.++++.+
T Consensus       373 ~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~  452 (505)
T TIGR00898       373 LITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAELYPTVVRNLGVGVCS  452 (505)
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHhhhHhHHH
Confidence            45788999999999999988888888777666532222444445556666666677788899999999999999999999


Q ss_pred             hhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhccCCCC
Q psy4740          83 AGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPA  134 (147)
Q Consensus        83 ~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (147)
                      ....+|.+++|.+.+ +.+.   ++...+.+.+...++..+... +.||++.
T Consensus       453 ~~~~ig~~i~p~i~~-~~~~---~~~~~~~~~~~~~~~~~~~~~-~lpet~~  499 (505)
T TIGR00898       453 TMARVGSIISPFLVY-LGEK---WLFLPLVLFGGLALLAGILTL-FLPETKG  499 (505)
T ss_pred             HHHHHHHHHHhHHHH-HHHH---HHhhHHHHHHHHHHHHHHHHH-cCcCCCC
Confidence            999999999999998 4443   566677777766666545444 4565543

>KOG0253|consensus

Probab=99.40  E-value=3.3e-12  Score=89.07  Aligned_cols=126  Identities=18%  Similarity=0.289  Sum_probs=107.6

Q ss_pred             CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHH
Q psy4740           2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFV   81 (147)
Q Consensus         2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~   81 (147)
                      +..+|.++|++|||+...+......+...+.+.+  +|+..+.+.|.+.|+|.|+ .|...++-.|..|..+|..-+-+.
T Consensus       130 a~~w~l~~d~~grr~~f~~T~l~t~v~~~is~~s--pnf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~r~~~~V~~  206 (528)
T KOG0253|consen  130 AMVWGLSADTIGRRKGFNLTFLVTGVFGVISGAS--PNFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSHRWLLTVMS  206 (528)
T ss_pred             hhhhheehhhhhcchhhhhhHHHHHHHHHhhcCC--CCeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcCCCcchhHH
Confidence            4678999999999999999999999988888888  9999999999999999999 888899999999999998777666


Q ss_pred             HhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhccCCCC
Q psy4740          82 FAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPA  134 (147)
Q Consensus        82 ~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (147)
                       ..+.+|..+...+.-..+.+  .||||.......+..+..... +..+|+|+
T Consensus       207 -~~waig~v~ea~law~vm~~--~gwr~~l~~~~~pl~~~a~f~-~w~~ESpR  255 (528)
T KOG0253|consen  207 -FFWAIGQVFEALLAWGVMSN--FGWRYLLFTSSTPLMFAARFL-VWVYESPR  255 (528)
T ss_pred             -HHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHhHHHHHHHHH-hhcccCcc
Confidence             88999999999999888888  799998888887766654444 45566654

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.39  E-value=3.6e-12  Score=91.68  Aligned_cols=126  Identities=16%  Similarity=0.087  Sum_probs=77.7

Q ss_pred             CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhh-cccc-----cHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchh
Q psy4740           2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPF-AARQ-----SANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERG   75 (147)
Q Consensus         2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~-~~~~-----~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~   75 (147)
                      ++++|+++||+|||+++.++..+.++....... ....     ......+..+..|.+.....+....+..+.  .++++
T Consensus        63 ~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g  140 (420)
T PRK09528         63 QPLYGLISDKLGLKKHLLWIISGLLVLFGPFFIYVFAPLLQYNILLGAIVGGIYLGFGFLAGAGAIEAYIERV--SRRSG  140 (420)
T ss_pred             HHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhhhhHHHHH--Hhhcc
Confidence            678999999999999988765555444322111 1000     111122233334433333333333333322  24567


Q ss_pred             HHHHHHHhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhccCC
Q psy4740          76 KIGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYND  132 (147)
Q Consensus        76 ~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (147)
                      ..++......++|..++|.+++.+.+.   +|+..|++.++..++..+..+...+++
T Consensus       141 ~~~g~~~~~~~~g~~i~~~~~g~l~~~---~~~~~f~~~~~~~~~~~~~~~~~~~~~  194 (420)
T PRK09528        141 FEYGRARMWGSLGWALCAFIAGILFNI---NPQINFWLGSGSALILLVLLFFAKPDA  194 (420)
T ss_pred             ccchhhHHhhhHHHHHHHHHHHHHHhc---CchHhHHHHHHHHHHHHHHHhcccccc
Confidence            778888888899999999999988765   899999988877776555555554443

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.39  E-value=4.4e-12  Score=93.21  Aligned_cols=132  Identities=12%  Similarity=0.090  Sum_probs=87.5

Q ss_pred             cchhhhhhhhcchHHHHHHHHHHHHHHHHhhhccc--ccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHH
Q psy4740           3 IPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAAR--QSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSF   80 (147)
Q Consensus         3 ~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~   80 (147)
                      +..+++.||+|||+.++.+.++..+...+......  .+........+...+......+....+.+|.+|++.|+++.++
T Consensus       353 ~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~  432 (502)
T TIGR00887       353 WVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHLSTHGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGI  432 (502)
T ss_pred             HHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHH
Confidence            35678999999999998887776666655543310  1111111111111222223345667778999999999999999


Q ss_pred             HHhhhhhHHHHHHHHHHHHHhhc--------CCChhHHHHHHHHHHHHHHHHHHhhccCCCCC
Q psy4740          81 VFAGNQIGTVFSSFLSGFLLKYT--------DGDWPEIFYLFGILGVLWFVAWCFLCYNDPAS  135 (147)
Q Consensus        81 ~~~~~~~g~~~~~~~~~~l~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (147)
                      .+....++..++|.+.+.+.+.+        +.++...|++.++..++..+.. ++.||++.+
T Consensus       433 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~-~~lpEt~~~  494 (502)
T TIGR00887       433 SAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILFT-LLIPETKGK  494 (502)
T ss_pred             HHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHHHh-eEeccCCCC
Confidence            99999999999999999887742        1244567777777666654443 566776553

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.39  E-value=6.8e-12  Score=90.42  Aligned_cols=133  Identities=16%  Similarity=0.173  Sum_probs=96.7

Q ss_pred             CCcchhhhhhh----hcch-HHHHHHHHHHHHHHHHhhhcccc----cHHHHHHHHHHHhhccccCcccHHHHhhhhc-C
Q psy4740           1 MHIPGGLLAQK----FGGK-HTLGFGILSTAIFTLLTPFAARQ----SANWLIALRFFEGLGEGTTFPALNTLLAQWV-P   70 (147)
Q Consensus         1 ~~~~~g~l~d~----~gr~-~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~-~   70 (147)
                      .+|+.|+++||    +||| +.++.+....++..+++...+..    ....+++.+++.+++.+.......++..|.. +
T Consensus        51 ~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~  130 (437)
T TIGR00792        51 TDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGKLVYAYITYILLGLFYSFVNIPYWSLVPAITLD  130 (437)
T ss_pred             ccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHhhcccHhhCcccccCC
Confidence            36889999998    6764 46667777777777766554211    1445666778888888887777888888887 5


Q ss_pred             CcchhHHHHHHHhhhhhHHHHHHHHHHHHHhh-----cCCChhHHHHHHHHHHHHHHHHHHhhccCCC
Q psy4740          71 PTERGKIGSFVFAGNQIGTVFSSFLSGFLLKY-----TDGDWPEIFYLFGILGVLWFVAWCFLCYNDP  133 (147)
Q Consensus        71 ~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (147)
                      +++|++..+.......+|..+++.+.+.+...     ...+|+..+.+.+++..+..+......+|++
T Consensus       131 ~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~e~~  198 (437)
T TIGR00792       131 PRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALIGVVSLIICFFGTKERY  198 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHHHHHHHHHHHcCCEecC
Confidence            68999999998888888888777766655532     1258999999888887776666556666654

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.38  E-value=8.2e-12  Score=89.78  Aligned_cols=109  Identities=18%  Similarity=0.125  Sum_probs=75.6

Q ss_pred             CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHH
Q psy4740           2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFV   81 (147)
Q Consensus         2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~   81 (147)
                      +++.|++.||+|||+.+..+.++..+..........++........+..+....+..+....++.|.+|+++|++++|+.
T Consensus       283 ~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~  362 (426)
T PRK12307        283 NIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQDNYLLLGACLFGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLI  362 (426)
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHH
Confidence            45789999999999998888777666555443332122222222222222222333445667889999999999999999


Q ss_pred             HhhhhhHHHHHHHHHHHHHhhcCCChhHHHH
Q psy4740          82 FAGNQIGTVFSSFLSGFLLKYTDGDWPEIFY  112 (147)
Q Consensus        82 ~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~  112 (147)
                      +....+++.++|.+.+.+.+.  .++....+
T Consensus       363 ~~~~~~~~~~gp~~~g~l~~~--~g~~~~~~  391 (426)
T PRK12307        363 YNLAATSGTFNSMAATWLGIT--MGLGAALT  391 (426)
T ss_pred             HHHHhHHHHHHHHHHHHHHHc--ccHHHHHH
Confidence            999999999999999999888  56554333

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.38  E-value=1.2e-11  Score=90.23  Aligned_cols=124  Identities=19%  Similarity=0.221  Sum_probs=102.0

Q ss_pred             Ccchhhhhhhhcch--HHHHHHHHHHHHHHHHhhh------cccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcc
Q psy4740           2 HIPGGLLAQKFGGK--HTLGFGILSTAIFTLLTPF------AARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTE   73 (147)
Q Consensus         2 ~~~~g~l~d~~gr~--~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~   73 (147)
                      .+.+|++.||+|.|  +++....++..+.++...+      ...++.+.+++..++.|+.+|..++.+-++.+|+.|+++
T Consensus       334 a~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~  413 (477)
T PF11700_consen  334 ALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGR  413 (477)
T ss_pred             HHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCch
Confidence            46789999999999  8888877777555544433      012677788899999999999999999999999999999


Q ss_pred             hhHHHHHHHhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHH
Q psy4740          74 RGKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWC  126 (147)
Q Consensus        74 r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (147)
                      .+..+|++.........+||++.+.+.+.++ +.|..+....++.++..++..
T Consensus       414 e~efFgly~i~gk~ss~lGPll~g~i~~~tg-~~r~g~~~l~~lf~~gl~ll~  465 (477)
T PF11700_consen  414 EAEFFGLYAITGKASSWLGPLLFGLITDATG-SQRYGFLFLLVLFLIGLILLF  465 (477)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CchhHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999864 578887777777666555543

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=99.37  E-value=6.1e-12  Score=91.55  Aligned_cols=130  Identities=15%  Similarity=0.086  Sum_probs=93.3

Q ss_pred             Ccchhhhhh----hhcchHHHHHH-HHHHHHHHHHhhhcccccH-----------------HHHHHHHHHHhhccccCcc
Q psy4740           2 HIPGGLLAQ----KFGGKHTLGFG-ILSTAIFTLLTPFAARQSA-----------------NWLIALRFFEGLGEGTTFP   59 (147)
Q Consensus         2 ~~~~g~l~d----~~gr~~~~~~~-~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~l~g~~~~~~~~   59 (147)
                      +|+.|+++|    |+|||+.++++ ....++...+++++  ++.                 ...++...+..++.....+
T Consensus        56 ~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~--~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~  133 (477)
T TIGR01301        56 QPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFA--ADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQG  133 (477)
T ss_pred             HhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhC--chhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence            688999999    59999998875 55555555555554  221                 1222333334445666667


Q ss_pred             cHHHHhhhhcCCcch--hHHHHHHHhhhhhHHHHHHHHHHHHH--hhc-----------CCChhHHHHHHHHHHHHHHHH
Q psy4740          60 ALNTLLAQWVPPTER--GKIGSFVFAGNQIGTVFSSFLSGFLL--KYT-----------DGDWPEIFYLFGILGVLWFVA  124 (147)
Q Consensus        60 ~~~~~~~~~~~~~~r--~~~~~~~~~~~~~g~~~~~~~~~~l~--~~~-----------~~~~~~~~~~~~~~~~~~~~~  124 (147)
                      ...++++|..|+++|  +.+.++.+...++|..+++.+++...  +..           ..+.+..|++.++..++..+.
T Consensus       134 p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~  213 (477)
T TIGR01301       134 PCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYI  213 (477)
T ss_pred             HHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHH
Confidence            788999999998865  57888899999999999999998752  211           026789999998888887778


Q ss_pred             HHhhccCCC
Q psy4740         125 WCFLCYNDP  133 (147)
Q Consensus       125 ~~~~~~~~~  133 (147)
                      ..+..+|.+
T Consensus       214 t~~~v~E~~  222 (477)
T TIGR01301       214 ALSAVKENP  222 (477)
T ss_pred             HeeeeeccC
Confidence            777777754

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.36  E-value=1.9e-11  Score=86.88  Aligned_cols=114  Identities=14%  Similarity=0.219  Sum_probs=89.5

Q ss_pred             CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHH
Q psy4740           2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFV   81 (147)
Q Consensus         2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~   81 (147)
                      +++.|++.||+|+|+.+..+..+..++.....    . .........+.|.+.....|.....+.|..|+++++...+..
T Consensus       252 ~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~----~-~~~~~~~~~l~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~  326 (381)
T PRK03633        252 QWPIGRLADRFGRLLVLRVQVFVVILGSIAML----S-QAAMAPALFILGAAGFTLYPVAMAWACEKVEHHELVAMNQAL  326 (381)
T ss_pred             HhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh----h-hHHHHHHHHHHHHHHHhHHHHHHHHHHccCCHHHHHHHHHHH
Confidence            56789999999999998887777666554432    1 122334566677766677888888899999988888888888


Q ss_pred             HhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHH
Q psy4740          82 FAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWF  122 (147)
Q Consensus        82 ~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  122 (147)
                      +...++|..++|.+++.+.++  .++++.|.+.+.+.++..
T Consensus       327 ~~~~~lG~~igp~~~G~l~~~--~g~~~~f~~~~~~~l~~~  365 (381)
T PRK03633        327 LLSYTVGSLLGPSFTAMLMQN--YSDNLLFIMIASVSFIYL  365 (381)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH--hCccHHHHHHHHHHHHHH
Confidence            888999999999999999998  689999988877776543

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=99.36  E-value=2.3e-11  Score=85.39  Aligned_cols=127  Identities=22%  Similarity=0.205  Sum_probs=107.1

Q ss_pred             CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhc-ccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHH
Q psy4740           2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFA-ARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSF   80 (147)
Q Consensus         2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~   80 (147)
                      .++.+++.+|+|+|+.++++..+.++++.+..-+ ..+++..++..-++.|.|.+......+.++....++++..+.+++
T Consensus        65 ~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl  144 (422)
T COG0738          65 SLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNL  144 (422)
T ss_pred             hccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHH
Confidence            4688999999999999999999999999988533 336888889999999999999999999999999999999999999


Q ss_pred             HHhhhhhHHHHHHHHHHHHHhhc-----------------CCChhHHHHHHHHHHHHHHHHHHhh
Q psy4740          81 VFAGNQIGTVFSSFLSGFLLKYT-----------------DGDWPEIFYLFGILGVLWFVAWCFL  128 (147)
Q Consensus        81 ~~~~~~~g~~~~~~~~~~l~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~  128 (147)
                      .+..+.+|.+++|.+++.+..+.                 -..++.+|...+...++..+.....
T Consensus       145 ~q~fn~lGa~~gp~~g~~lils~~~~~~~~~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~~  209 (422)
T COG0738         145 AQAFNGLGAILGPLLGSSLILSGVALTMSAAQILAIKGADASSVQFPYLILAGLLVLLAVLILLS  209 (422)
T ss_pred             HHHhhhhHHHHHHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999999887730                 0257778887777666554444433

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.35  E-value=3.9e-12  Score=92.51  Aligned_cols=119  Identities=22%  Similarity=0.182  Sum_probs=90.7

Q ss_pred             Ccchhhhhhhh--cchHHHHHH--HHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHH
Q psy4740           2 HIPGGLLAQKF--GGKHTLGFG--ILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKI   77 (147)
Q Consensus         2 ~~~~g~l~d~~--gr~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~   77 (147)
                      +++.|+++||.  ++|+...+.  .+...+..+.+...  ++++.+++.+++.|++.+...+...+.+.|.+|++++++.
T Consensus       293 ~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~--~~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~  370 (455)
T TIGR00892       293 RPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALA--GDYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSA  370 (455)
T ss_pred             HHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHh--chHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhH
Confidence            45678999973  344433333  33333333444444  6777888889999999998888889999999999999999


Q ss_pred             HHHHHhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHH
Q psy4740          78 GSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFV  123 (147)
Q Consensus        78 ~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  123 (147)
                      +++++...++|..++|.+++.+.+..+ +|+..|++.++..++..+
T Consensus       371 ~g~~~~~~~lg~~igp~i~G~l~~~~g-~~~~~f~~~~~~~li~~~  415 (455)
T TIGR00892       371 VGLVTIVECCAVLIGPPLAGRLVDATK-NYKYIFYASGSIVVSAGL  415 (455)
T ss_pred             HhHHHHHHHHHHHccccceeeeehhcC-CcchHHHHhhHHHHHHHH
Confidence            999999999999999999999988732 699998888776655433

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.34  E-value=3e-11  Score=86.33  Aligned_cols=129  Identities=15%  Similarity=0.094  Sum_probs=95.6

Q ss_pred             CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcC-CcchhHHHHH
Q psy4740           2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVP-PTERGKIGSF   80 (147)
Q Consensus         2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~   80 (147)
                      ++..+++.||+|||+.+..+..+..++........ .+....  ..++.|++.+...+.......|..+ +++|++..+.
T Consensus       257 ~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~--~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~  333 (393)
T PRK09705        257 ALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLP-LQLPVL--WAMVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAF  333 (393)
T ss_pred             HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHcc-chHHHH--HHHHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHH
Confidence            45789999999999998888777777666544332 222222  2345677777777777767777775 5789999999


Q ss_pred             HHhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhccCCCC
Q psy4740          81 VFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPA  134 (147)
Q Consensus        81 ~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (147)
                      .+....++..++|.+.+.+.+..+ +|...|++.....++.......+.||++.
T Consensus       334 ~~~~~~~~~~~gp~~~G~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (393)
T PRK09705        334 MQGIGFIIAGLAPWFSGVLRSISG-NYLMDWAFHALCVVGLMIITLRFAPARFP  386 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhC-CchHHHHHHHHHHHHHHHHHHHhcccccc
Confidence            999999999999999999999843 58888888777777766666666666544

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.33  E-value=1.1e-11  Score=90.09  Aligned_cols=126  Identities=13%  Similarity=0.128  Sum_probs=79.9

Q ss_pred             Ccchhhhhhhh--cchHHH-HHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHH
Q psy4740           2 HIPGGLLAQKF--GGKHTL-GFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIG   78 (147)
Q Consensus         2 ~~~~g~l~d~~--gr~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~   78 (147)
                      .++.|+++||+  +||+.. .....+..++..........+....++..++.|............+..|.+|++.|+++.
T Consensus       306 ~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~  385 (452)
T PRK11273        306 TLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLNPAGNPTVDMACMIVIGFLIYGPVMLIGLHALELAPKKAAGTAA  385 (452)
T ss_pred             HHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcChhhhhhHH
Confidence            45789999999  555432 222233333322222221134444444444445433222223345678999999999999


Q ss_pred             HHHHhhhhhHHHH-HHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhc
Q psy4740          79 SFVFAGNQIGTVF-SSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLC  129 (147)
Q Consensus        79 ~~~~~~~~~g~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (147)
                      |+.+....+|+.+ +|.+.+.+.+.  .+|+..|++.++..++.++......
T Consensus       386 g~~~~~~~~g~~~~g~~v~g~l~~~--~g~~~~f~~~~~~~~~~~~~~~~~~  435 (452)
T PRK11273        386 GFTGLFGYLGGSVAASAIVGYTVDF--FGWDGGFMVMIGGSILAVILLIVVM  435 (452)
T ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHH--hcchHHHHHHHHHHHHHHHHHHHHh
Confidence            9999888887654 79999999998  6899999988887776655555443

>KOG0253|consensus

Probab=99.30  E-value=9.9e-12  Score=86.73  Aligned_cols=124  Identities=19%  Similarity=0.278  Sum_probs=89.5

Q ss_pred             CCcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccH--HHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHH
Q psy4740           1 MHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSA--NWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIG   78 (147)
Q Consensus         1 ~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~   78 (147)
                      |.++.+++.||+|||+.+....++.++..+.......+|.  .++...|++    .++.+...+.|..|.+|+..|+.+.
T Consensus       397 GlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~araf----isg~fqvaYvYtPEVyPTavRatgv  472 (528)
T KOG0253|consen  397 GLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAF----ISGAFQVAYVYTPEVYPTAVRATGV  472 (528)
T ss_pred             chhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHH----HhchheEEEEecCcccchhhhhcch
Confidence            3467899999999999999999999998888776633332  233345544    3445566788999999999999999


Q ss_pred             HHHHhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhccCC
Q psy4740          79 SFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYND  132 (147)
Q Consensus        79 ~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (147)
                      |.......+|+++.|.++  +...  .+-..+..+.+.+.++..+...++.-|+
T Consensus       473 GtcSsmaRIggI~~p~iA--~~~e--~s~sl~i~vy~~~~ilagIavcffPiEt  522 (528)
T KOG0253|consen  473 GTCSSMARIGGIFSPVIA--MRAE--LSTSLPIFVYGALFILAGIAVCFFPIET  522 (528)
T ss_pred             hhhhhHHhhhhhhhhHHH--HHhc--cceeehHHHHHHHHHHHHHHheeeeecc
Confidence            999999999999999999  2222  2333445555555555555555443343

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.30  E-value=5.5e-11  Score=84.62  Aligned_cols=113  Identities=12%  Similarity=0.018  Sum_probs=98.4

Q ss_pred             cchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHHH
Q psy4740           3 IPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVF   82 (147)
Q Consensus         3 ~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~   82 (147)
                      ++.+++.||+|+|+.+.++.+...+......+.  ++.+.++..+++.|+..+...+....++++. |+++|++..++++
T Consensus       258 ~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~  334 (382)
T TIGR00902       258 AFSNKLFQNCSARDLLLISAIACVGRWAIIGAI--EAFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYN  334 (382)
T ss_pred             HHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhH--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHH
Confidence            467899999999999999999999998888777  8888899999999999999999999999998 9999999999986


Q ss_pred             -hhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHH
Q psy4740          83 -AGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLW  121 (147)
Q Consensus        83 -~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  121 (147)
                       ...++|..+++.++|.+.++  .++ ..|...+.+.++.
T Consensus       335 ~~~~g~g~~~g~~~~G~l~~~--~g~-~~~~~~~~~~~~~  371 (382)
T TIGR00902       335 ALAMGGLIAIFTAFAGFIYPT--LGA-GTFVFMAIIAAAA  371 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHh--ccH-HHHHHHHHHHHHH
Confidence             46789999999999999999  565 5677777766654

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.29  E-value=5.4e-11  Score=86.03  Aligned_cols=128  Identities=13%  Similarity=-0.002  Sum_probs=79.7

Q ss_pred             Ccchhhhhhhh--cc-hHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHH
Q psy4740           2 HIPGGLLAQKF--GG-KHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIG   78 (147)
Q Consensus         2 ~~~~g~l~d~~--gr-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~   78 (147)
                      ++..|+++||+  ++ +.......+...+...........+........+..|+..............|.+|+++|++..
T Consensus       296 ~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~  375 (434)
T PRK11663        296 ALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSLWLMPFASYVMQAACFFTIGFFVFGPQMLIGMAAAECSHKEAAGAAT  375 (434)
T ss_pred             HHHHhhhHHHhccCCccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhhHHhHH
Confidence            46789999998  33 3322221111111111111111123333333334444432221222345678999999999999


Q ss_pred             HHHHhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhccC
Q psy4740          79 SFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYN  131 (147)
Q Consensus        79 ~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (147)
                      ++.+....+|..++|.+.+.+.+.  .+|+..|+..+++.++..+..+...++
T Consensus       376 g~~~~~~~~g~~~~p~~~g~l~~~--~g~~~~f~~~~~~~~~~~~~~~~~~~~  426 (434)
T PRK11663        376 GFVGLFAYLGAALSGYPLAKVLEI--WHWTGFFVVISIAAGISALLLLPFLNA  426 (434)
T ss_pred             HHHHHHHHHHHHHhcccHHHHHHh--cccHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            999999999999999999999998  689999998888877766655544444

>PRK03699 putative transporter; Provisional

Probab=99.29  E-value=2.9e-11  Score=86.35  Aligned_cols=122  Identities=14%  Similarity=0.082  Sum_probs=93.6

Q ss_pred             CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHH
Q psy4740           2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFV   81 (147)
Q Consensus         2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~   81 (147)
                      .+..|+++||++||+.+.....+..+...+....  ++.....+..++.|++.+..++...++..|..| ++++...+..
T Consensus       258 ~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~  334 (394)
T PRK03699        258 MWIFSFIVRFFDLQRILTVLAGLALVLMYLFVNT--DDPSHLLYAILGLGFFSSAIYTTIITLGSQQTK-VASPKLVNFI  334 (394)
T ss_pred             HHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHc--CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-CCCHHHHHHH
Confidence            4568999999999999887776666655555444  565566666778888777777777778888775 4467788888


Q ss_pred             HhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhh
Q psy4740          82 FAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFL  128 (147)
Q Consensus        82 ~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (147)
                      .....+|..++|.+.+.+.+.  .+++..++..+++.++..+.....
T Consensus       335 ~~~~~~g~~i~p~~~G~l~~~--~g~~~~~~~~~~~~~~~~~~~~~~  379 (394)
T PRK03699        335 LTCGTIGTMLTFVVTSPIVAH--FGLQAALLTANGLYAVVFVMCILL  379 (394)
T ss_pred             HHhhhHHHHHHHHHHHHHHHH--hCchhhhhhhHHHHHHHHHHHHHH
Confidence            888899999999999999998  689999888887777665544433

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.27  E-value=2e-11  Score=86.35  Aligned_cols=115  Identities=19%  Similarity=0.219  Sum_probs=84.3

Q ss_pred             CcchhhhhhhhcchHHHHHHHHHHHHHH--HHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHH
Q psy4740           2 HIPGGLLAQKFGGKHTLGFGILSTAIFT--LLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGS   79 (147)
Q Consensus         2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~   79 (147)
                      +++.|+++||+|||+.+.....+..+..  ........++.+......++.|.+.+...+.....+.|.+|+++|+++.+
T Consensus       272 ~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~  351 (394)
T TIGR00883       272 IPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGAS  351 (394)
T ss_pred             HHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEee
Confidence            3578999999999998775544443332  12222222455666677788888888888889999999999999999999


Q ss_pred             HH-HhhhhhHHHHHHHHHHHHHhhcCCC-hhHHHHHHHHHH
Q psy4740          80 FV-FAGNQIGTVFSSFLSGFLLKYTDGD-WPEIFYLFGILG  118 (147)
Q Consensus        80 ~~-~~~~~~g~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~  118 (147)
                      +. +....+|..++|.+++.+.++  .+ |+..++......
T Consensus       352 ~~~~~~~~~g~~~~p~~~g~l~~~--~g~~~~~~~~~~~~~  390 (394)
T TIGR00883       352 LAYNLAGAIFGGFAPYIAAALVAM--TGDWYAIGYYLAALA  390 (394)
T ss_pred             ehhHhHHHHHhhHHHHHHHHHHHH--cCcchhHHHHHHHHH
Confidence            84 455678888999999999988  45 777666655443

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PRK10054 putative transporter; Provisional

Probab=99.26  E-value=1.6e-10  Score=82.76  Aligned_cols=121  Identities=16%  Similarity=0.048  Sum_probs=95.0

Q ss_pred             CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHH
Q psy4740           2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFV   81 (147)
Q Consensus         2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~   81 (147)
                      +++.|++.||+++|+.+..+..+..++....... .++.+.+.+..++.|++.+...|.....+.+..|++.|+++.+..
T Consensus       261 ~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~~~~~~~~~  339 (395)
T PRK10054        261 QYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFS-GNSLLLWGMSAAVFTVGEIIYAPGEYMLIDHIAPPGMKASYFSAQ  339 (395)
T ss_pred             hhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHc-chHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCcccceehHhHH
Confidence            4567899999999999988887777777666543 145556667788899998887888888999999999999998865


Q ss_pred             HhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHH
Q psy4740          82 FAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWC  126 (147)
Q Consensus        82 ~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (147)
                      + ...+|..++|.+++.+.++  .+....|++.+....+..+...
T Consensus       340 ~-~~~~G~~~Gp~~~G~l~~~--~g~~~~~~~~~~~~~~~~~~~~  381 (395)
T PRK10054        340 S-LGWLGAAINPLVSGVILTT--LPPWSLFVILALAIVAAWLLML  381 (395)
T ss_pred             H-HHHHHHHHHHHHHHHHHHH--cChhhHHHHHHHHHHHHHHHHH
Confidence            4 5668999999999999999  6777778776666555444443

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.26  E-value=1.6e-10  Score=84.94  Aligned_cols=126  Identities=17%  Similarity=0.172  Sum_probs=91.1

Q ss_pred             CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhh-c-ccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHH
Q psy4740           2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPF-A-ARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGS   79 (147)
Q Consensus         2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~   79 (147)
                      .++.|+++||+|+|+.+..+.++.++....... . ..++...+....++..+..+...+...++..+..+++.+++..+
T Consensus       276 ~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~g  355 (491)
T PRK11010        276 ALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMGAAVFFENLCGGMGTAAFVALLMTLCNKSFSATQFA  355 (491)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHH
Confidence            457899999999998877666554544433211 1 11344444444455444444455666888899999999999999


Q ss_pred             HHHhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhc
Q psy4740          80 FVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLC  129 (147)
Q Consensus        80 ~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (147)
                      +.++..++|..+++.+.|.+.+.  .||+..|.+.++..++..+......
T Consensus       356 l~~s~~~lg~~~~~~~~G~l~~~--~G~~~~f~~~~~~~l~~l~~~~~~~  403 (491)
T PRK11010        356 LLSALSAVGRVYVGPVAGWFVEA--HGWPTFYLFSVAAAVPGLLLLLVCR  403 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH--hChHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999998  6899999988888877665555543

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.25  E-value=9.3e-11  Score=82.73  Aligned_cols=122  Identities=16%  Similarity=0.164  Sum_probs=80.7

Q ss_pred             CcchhhhhhhhcchHHHH-HHHHHHHH----HHHHhhhc-ccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchh
Q psy4740           2 HIPGGLLAQKFGGKHTLG-FGILSTAI----FTLLTPFA-ARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERG   75 (147)
Q Consensus         2 ~~~~g~l~d~~gr~~~~~-~~~~~~~~----~~~~~~~~-~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~   75 (147)
                      +++.|+++||++||+... .......+    ........ ..++....+....+.+.+.+ ..+....+++|.+|+++|+
T Consensus       268 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g  346 (399)
T TIGR00893       268 MILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFATNYVNIPYAALALVALGFFGLG-AGAIGWALISDNAPGNIAG  346 (399)
T ss_pred             HHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhchh-hhhHHHHHHHhhcChhHHH
Confidence            457899999999986111 11111111    11111111 11233333333333333433 6788899999999999999


Q ss_pred             HHHHHHHhhhhhHHHHHHHHHHHHHhhcCCC-hhHHHHHHHHHHHHHHHHHH
Q psy4740          76 KIGSFVFAGNQIGTVFSSFLSGFLLKYTDGD-WPEIFYLFGILGVLWFVAWC  126 (147)
Q Consensus        76 ~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~  126 (147)
                      +..++.+...++|..++|.+.+.+.+.  .+ |+..+++.+...++..+...
T Consensus       347 ~~~~~~~~~~~~g~~~~~~i~g~l~~~--~g~~~~~~~~~~~~~~~~~~~~~  396 (399)
T TIGR00893       347 LTGGLINSLGNLGGIVGPIVIGAIAAT--TGSFAGALMVVAALALIGALSYL  396 (399)
T ss_pred             HHHHHHHHHHHHhhhhhhHHhhhhccC--CCchhHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999887  56 99888888777766544443

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.25  E-value=5.6e-11  Score=84.53  Aligned_cols=108  Identities=14%  Similarity=0.205  Sum_probs=83.1

Q ss_pred             CcchhhhhhhhcchHHHHHHHHHHHHHHHH-hhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHH
Q psy4740           2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLL-TPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSF   80 (147)
Q Consensus         2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~   80 (147)
                      .++.|++.||+|||+.+..+.....+.... ....  ++...+.+..++.+...+...+....++.|.+|+++|++.+|+
T Consensus       291 ~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  368 (405)
T TIGR00891       291 GCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIG--ANVAVLGLGLFFQQMLVQGIWGILPKHLGEYFPTDQRAAGLGF  368 (405)
T ss_pred             HHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHhC--CchHHHHHHHHHHHHHHccchhhHHHHHhhhCCcchhHHHhhH
Confidence            456789999999999988776655333322 2222  4555556666677776666777788899999999999999999


Q ss_pred             HHhhhhhHHHHHHHHHHHHHhhcCCC-hhHHHHH
Q psy4740          81 VFAGNQIGTVFSSFLSGFLLKYTDGD-WPEIFYL  113 (147)
Q Consensus        81 ~~~~~~~g~~~~~~~~~~l~~~~~~~-~~~~~~~  113 (147)
                      .+...++|..++|.+.+.+.+.  .| |+..+..
T Consensus       369 ~~~~~~~g~~~g~~~~g~l~~~--~g~~~~~~~~  400 (405)
T TIGR00891       369 TYQLGNLGGALAPIIGALLAQR--LDEYGTALAS  400 (405)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHh--ccccchhHHh
Confidence            9999999999999999999998  45 7665544

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.25  E-value=5.1e-11  Score=85.91  Aligned_cols=100  Identities=24%  Similarity=0.285  Sum_probs=82.1

Q ss_pred             CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcC-------Ccch
Q psy4740           2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVP-------PTER   74 (147)
Q Consensus         2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-------~~~r   74 (147)
                      .+++++++||+|+|+.+..+..+.+++........ ++....++..++.|++.+...+...+.++|..+       ++.+
T Consensus       274 ~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (437)
T TIGR00792       274 VLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAG-SNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAE  352 (437)
T ss_pred             HHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccch
Confidence            35789999999999999998888877776665542 355566677788888888888888888888765       4568


Q ss_pred             hHHHHHHHhhhhhHHHHHHHHHHHHHhh
Q psy4740          75 GKIGSFVFAGNQIGTVFSSFLSGFLLKY  102 (147)
Q Consensus        75 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~  102 (147)
                      |...++.+....+|..+++.+.+.+.+.
T Consensus       353 G~~~~~~~~~~~~g~~lg~~i~g~ll~~  380 (437)
T TIGR00792       353 GLVYSVRTFVRKLGQALAGFLVGLILGI  380 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999998876

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PRK10504 putative transporter; Provisional

Probab=99.24  E-value=1.5e-10  Score=84.38  Aligned_cols=100  Identities=22%  Similarity=0.212  Sum_probs=81.0

Q ss_pred             cchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcc-cccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHH
Q psy4740           3 IPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAA-RQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFV   81 (147)
Q Consensus         3 ~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~   81 (147)
                      ++.+++.||+|||+++..+....++...+..... .++.....+..++.|++.+...+..+..+.+..|++.++.+.++.
T Consensus       315 ~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  394 (471)
T PRK10504        315 RIVVQVVNRFGYRRVLVATTLGLALVSLLFMLVALLGWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLL  394 (471)
T ss_pred             HHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHhccchHHHH
Confidence            5689999999999999988887777766555432 123333445567778888888888889999999999999999999


Q ss_pred             HhhhhhHHHHHHHHHHHHHhh
Q psy4740          82 FAGNQIGTVFSSFLSGFLLKY  102 (147)
Q Consensus        82 ~~~~~~g~~~~~~~~~~l~~~  102 (147)
                      +....+|..+++.+.+.+.+.
T Consensus       395 ~~~~~~g~~ig~~i~g~ll~~  415 (471)
T PRK10504        395 SMIMQLSMSIGVTIAGLLLGL  415 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999988776

>TIGR00897 2A0118 polyol permease family

Probab=99.23  E-value=2.1e-10  Score=82.18  Aligned_cols=122  Identities=17%  Similarity=0.250  Sum_probs=86.4

Q ss_pred             CcchhhhhhhhcchHHHH-HHHHHHHHHHHHhhhc---ccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHH
Q psy4740           2 HIPGGLLAQKFGGKHTLG-FGILSTAIFTLLTPFA---ARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKI   77 (147)
Q Consensus         2 ~~~~g~l~d~~gr~~~~~-~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~   77 (147)
                      .+..|+++||+|||+.+. .+.+...+........   ..++.+..++..++.|++.+...+ ....+.|.. +++|+++
T Consensus       274 ~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~-~~~~g~~  351 (402)
T TIGR00897       274 NVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQHFGHSFAVALIIAIALGIFLAGYVP-LAAVFPTLA-PKHKGAA  351 (402)
T ss_pred             HHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHH-HHHHHHhhC-cchhHHH
Confidence            457899999999888764 2333333332222211   114556666777888887766544 445666765 5689999


Q ss_pred             HHHHHhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHh
Q psy4740          78 GSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCF  127 (147)
Q Consensus        78 ~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (147)
                      .++.+...+++..++|.+.+.+.+.  .+|...+++.+++.++..+...+
T Consensus       352 ~g~~~~~~~lg~~~gp~i~g~l~~~--~g~~~~~~~~a~~~~i~~~~~~~  399 (402)
T TIGR00897       352 MSVLNLSAGLSAFLAPAIAVLFIGF--FGAIGVVWIFAALYVVSAFLTAF  399 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhh--cchHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999998  68999999888877665555444

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.22  E-value=1e-10  Score=83.49  Aligned_cols=120  Identities=13%  Similarity=0.156  Sum_probs=96.3

Q ss_pred             cchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHH-H
Q psy4740           3 IPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSF-V   81 (147)
Q Consensus         3 ~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~   81 (147)
                      +..+++.||+|+|+.+.++.++.++........  ++.+.+++.+++.|++..........+..+..+++.+++..+. .
T Consensus       272 ~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~--~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~at~~~~~~  349 (396)
T TIGR00882       272 FCAPLIINRIGAKNALLIAGTIMSVRIIGSSFA--TTALEVVILKMLHAFEVPFLLVGCFKYITSQFDVRLSATIYLIGF  349 (396)
T ss_pred             HHHHHHHHHhccchhHHHHHHHHHHHHHHHHhc--CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceEEEeehHHH
Confidence            567899999999999998888888777665555  6777788888888887655545555667777888888887766 5


Q ss_pred             HhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHH
Q psy4740          82 FAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWC  126 (147)
Q Consensus        82 ~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (147)
                      +....+|..+++.+.|.+.+.  .||+.+|.+.+++.++..+...
T Consensus       350 ~~~~~lg~~~~~~l~G~l~~~--~G~~~~f~~~~~~~~i~~~~~~  392 (396)
T TIGR00882       350 QFAKQLAMIFLSTLAGNMYDS--IGFQGAYLVLGCIVLLFTLISV  392 (396)
T ss_pred             HHHHHHHHHHHHHhHHHHHHh--cccHHHHHHHHHHHHHHHHHHH
Confidence            678999999999999999998  6899999998888777655543

>PRK15075 citrate-proton symporter; Provisional

Probab=99.20  E-value=2.7e-10  Score=82.40  Aligned_cols=107  Identities=18%  Similarity=0.139  Sum_probs=70.7

Q ss_pred             CcchhhhhhhhcchHHHHHHHHHHHHHHHH-h-hhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHH
Q psy4740           2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLL-T-PFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGS   79 (147)
Q Consensus         2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~   79 (147)
                      .+..|+++||+|||+.+..+.++..+.... . .....++........++.+++.+...+....+..|.+|+++|+++.+
T Consensus       291 ~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g  370 (434)
T PRK15075        291 LPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAAPSFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFS  370 (434)
T ss_pred             HHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCccchhee
Confidence            356899999999999887765443322211 1 11111333334444455566666666666788999999999999999


Q ss_pred             HHHhhhh-hHHHHHHHHHHHHHhhcCCChh
Q psy4740          80 FVFAGNQ-IGTVFSSFLSGFLLKYTDGDWP  108 (147)
Q Consensus        80 ~~~~~~~-~g~~~~~~~~~~l~~~~~~~~~  108 (147)
                      +.+.... +++.++|.+.+.+.+..+.+|.
T Consensus       371 ~~~~~~~~~~g~~~p~~~g~i~~~~g~~~~  400 (434)
T PRK15075        371 LAYSLATAIFGGFTPAISTWLIHVTGDKAA  400 (434)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHhcCCchH
Confidence            8655444 4577899999999988433333

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.19  E-value=7.2e-10  Score=79.14  Aligned_cols=127  Identities=16%  Similarity=0.174  Sum_probs=107.8

Q ss_pred             chhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHH-HH
Q psy4740           4 PGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSF-VF   82 (147)
Q Consensus         4 ~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~   82 (147)
                      +..++.+|+|.|+.++++.++.++=..++++.  ++.+.+.+.+.+-++-.+........++.+.+|++..++...+ .+
T Consensus       278 ~~p~li~rig~k~~Lllag~i~~iRi~~~~~~--~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~  355 (412)
T PF01306_consen  278 FSPWLINRIGAKNLLLLAGVIMAIRIIGSGFA--TNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQ  355 (412)
T ss_dssp             HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT----SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHT
T ss_pred             HHHHHHHhcChHhHHHHHHHHHHHHHHHHhhh--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHH
Confidence            56788999999999999999999999999888  9999999999999999999999999999999999998888888 46


Q ss_pred             hhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhccCCCC
Q psy4740          83 AGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPA  134 (147)
Q Consensus        83 ~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (147)
                      ...++|..+.+.++|.++|+  .|.+..|++.+.+.+...+...+..+++++
T Consensus       356 ~~~~~~~~i~s~~~G~lyd~--~G~~~tylimg~iv~~~~li~~f~l~~~~~  405 (412)
T PF01306_consen  356 FAKQIGIIILSPLAGYLYDR--IGFQHTYLIMGLIVLPFTLISAFTLKKDKK  405 (412)
T ss_dssp             TTHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHS--SSS
T ss_pred             HHHHHHHHHHhhhHHhhHhh--cCcHHHHHHHHHHHHHHHHHheeeecCCCc
Confidence            79999999999999999999  789999999888887777777777665444

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.18  E-value=8.7e-10  Score=80.07  Aligned_cols=128  Identities=20%  Similarity=0.146  Sum_probs=91.1

Q ss_pred             CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhccc----ccHHHHHHHHHHHhhccccCcccHHHHhhhhcCC------
Q psy4740           2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAAR----QSANWLIALRFFEGLGEGTTFPALNTLLAQWVPP------   71 (147)
Q Consensus         2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~------   71 (147)
                      ++++|+++||+|+|+++.++.+...+.........+    .++..+.+..+...++.|........++.+.+|+      
T Consensus       303 rplgG~LADRiG~~~vl~~~~i~~~i~~~~~~l~lp~~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~  382 (462)
T PRK15034        303 RSVGGAISDKFGGVRVTLINFIFMAIFSALLFLTLPGTGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRV  382 (462)
T ss_pred             HHhhHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhcc
Confidence            478999999999999999888777666643322211    2445555554444455555556667777777764      


Q ss_pred             ---------------cchhHHHHHHHhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhcc
Q psy4740          72 ---------------TERGKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCY  130 (147)
Q Consensus        72 ---------------~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (147)
                                     ++-|...|+......+|+.+.|.+.+...+.++ ++...|+...+..++...+.++..-
T Consensus       383 ~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g-~~~~~~~~~~~~~~~~~~~~w~~y~  455 (462)
T PRK15034        383 KMKGGSDEQAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTG-SPVGAMKVFLIFYIVCVLLTWLVYG  455 (462)
T ss_pred             cccccchhHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcC-CcHHHHHHHHHHHHHHHHHHHHHhc
Confidence                           156678888889999999999988888877754 6888888888888877666655543

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.17  E-value=1.9e-10  Score=81.42  Aligned_cols=121  Identities=19%  Similarity=0.246  Sum_probs=102.1

Q ss_pred             CCcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHH
Q psy4740           1 MHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSF   80 (147)
Q Consensus         1 ~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~   80 (147)
                      +++++|++.||+|.|+++..+.++..+.++...+.  .....+.+.-.+.|...|+.++.+-++..+..|+++-++.+|+
T Consensus       304 g~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~--~~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFgl  381 (438)
T COG2270         304 GAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFL--EGELDFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGL  381 (438)
T ss_pred             HHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHc--cccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeeh
Confidence            35678999999999999999999998888877666  5566777888899999999999999999999999999999999


Q ss_pred             HHhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHH
Q psy4740          81 VFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVA  124 (147)
Q Consensus        81 ~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  124 (147)
                      ++.....+..++|.+.+.+.+.++ +-|..+....++..+..+.
T Consensus       382 yaltgra~S~~gp~lv~v~t~iTg-~~r~g~~~i~vll~iGl~~  424 (438)
T COG2270         382 YALTGRAASFLGPFLVAVITQITG-SSRAGVLSIIVLLLIGLLL  424 (438)
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHhc-chhhHHHHHHHHHHhhHhh
Confidence            999999999999999999998865 4666665555555443333

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.17  E-value=6.2e-10  Score=80.50  Aligned_cols=124  Identities=16%  Similarity=0.067  Sum_probs=71.6

Q ss_pred             CcchhhhhhhhcchHHHHHHHHHHHHHHHHhh--hcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHH
Q psy4740           2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTP--FAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGS   79 (147)
Q Consensus         2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~   79 (147)
                      +++.|+++||+|||+.+....++.++......  ....++....+....+.....+...+....+.+|.+|++.|++++|
T Consensus       296 ~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g  375 (432)
T PRK10406        296 QPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNVSSPYAAFGLVMCALLIVSFYTSISGILKAEMFPAQVRALGVG  375 (432)
T ss_pred             HHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCccchhhh
Confidence            35679999999999988776554433322111  1111233222222222222223333456678899999999999999


Q ss_pred             HHHhhhhh-HHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHh
Q psy4740          80 FVFAGNQI-GTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCF  127 (147)
Q Consensus        80 ~~~~~~~~-g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (147)
                      +.+...+. .+...|.+.+.+.+.  ..|...++..+...++..+..++
T Consensus       376 ~~~~~g~~~~g~~~p~~~~~l~~~--g~~~~~~~~~~~~~~i~~~~~~~  422 (432)
T PRK10406        376 LSYAVANALFGGSAEYVALSLKSI--GMETAFFWYVTLMAVVAFLVSLM  422 (432)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHH
Confidence            98775553 344577777755433  24555566555555554444443

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.16  E-value=8.5e-10  Score=79.04  Aligned_cols=126  Identities=15%  Similarity=0.097  Sum_probs=88.4

Q ss_pred             CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcc---cccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHH
Q psy4740           2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAA---RQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIG   78 (147)
Q Consensus         2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~   78 (147)
                      .+..++++||+++|+.+..+.++..++........   ..+..++.+..++.|++.+...+........ .++++|++..
T Consensus       268 ~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~-~~~~~~g~~~  346 (406)
T PRK15402        268 NLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVISSHAYLWLTAGLSLYAFGIGLANAGLYRLTLF-SSDVSKGTVS  346 (406)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHhhhHHHHHhh-hccccccHHH
Confidence            35678999999999998888777766666554431   2345666777788888888777666555543 3458999999


Q ss_pred             HHHHhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhcc
Q psy4740          79 SFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCY  130 (147)
Q Consensus        79 ~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (147)
                      +..+.....+..+++.+.+.+.+.  .++....+......++..+....+.+
T Consensus       347 ~~~~~~~~~~~~~g~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  396 (406)
T PRK15402        347 AAMGMLSMLIFTVGIELSKHAYLG--GGNGLFNLFNLANGLLWLLLVRIFLK  396 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccC--CchHHHHHHHHHHHHHHHHHHHHHhc
Confidence            999999999999999999998877  45554444444444443334333333

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.14  E-value=7.2e-10  Score=81.87  Aligned_cols=119  Identities=21%  Similarity=0.119  Sum_probs=100.2

Q ss_pred             cchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHHH
Q psy4740           3 IPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVF   82 (147)
Q Consensus         3 ~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~   82 (147)
                      +..+++.+|+++++.+..+.+..++..+..++.  ++.+...+..++.|.+........++.+.+..|++.||+.++++.
T Consensus       272 l~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~--~~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~  349 (524)
T PF05977_consen  272 LLLPRLRRRLSSRRLVLLASLLFALALLLLALS--PSFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQ  349 (524)
T ss_pred             HHHHHhhcccCcchhhHHHHHHHHHHHHHHhcc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHH
Confidence            345677788888888888888888888888887  888888888899999888888888889999999999999999999


Q ss_pred             hhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHH
Q psy4740          83 AGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAW  125 (147)
Q Consensus        83 ~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (147)
                      +....+..+|..+.|.+.+.  .|.+..+.+.++..++..+..
T Consensus       350 ~~~~g~~~lGsll~G~la~~--~g~~~al~~a~~~lll~~~~~  390 (524)
T PF05977_consen  350 MVFFGGMPLGSLLWGFLADH--FGVRTALLIAGAALLLSALIA  390 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHH--hCHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999998  788888887776655544443

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.14  E-value=9e-10  Score=78.57  Aligned_cols=117  Identities=21%  Similarity=0.175  Sum_probs=84.9

Q ss_pred             cchhhhhhhhcchHHHHHHHHHHHHHHHHhhh-cc---cccHHHHHHHHHHHhhccccCcccHHHHhhhhcCC-cchhHH
Q psy4740           3 IPGGLLAQKFGGKHTLGFGILSTAIFTLLTPF-AA---RQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPP-TERGKI   77 (147)
Q Consensus         3 ~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-~~r~~~   77 (147)
                      ++.|++.||+|+|+.+..+..+.++....... ..   ..+....+....+.++..+...+.....+.+..++ +++++.
T Consensus       262 ~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~  341 (390)
T TIGR02718       262 GGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQAGTD  341 (390)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccchHHH
Confidence            46799999999999988776655333222211 10   12333334444555566666667777787777766 889999


Q ss_pred             HHHHHhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHH
Q psy4740          78 GSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLW  121 (147)
Q Consensus        78 ~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  121 (147)
                      ++..++..++|..++|.+++.+.+.  .|++..|...+++.++.
T Consensus       342 ~~~~~~~~~lg~~~g~~~~G~l~~~--~G~~~~f~~~~~~~l~a  383 (390)
T TIGR02718       342 VTAVQSTRDLGELIASSIAGYLTDR--FGYAGGFLSGTVLAVLA  383 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH--HccHHHHHHHHHHHHHH
Confidence            9999999999999999999999998  68988888877766554

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.13  E-value=2.8e-10  Score=79.76  Aligned_cols=99  Identities=21%  Similarity=0.235  Sum_probs=85.9

Q ss_pred             CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccc-cHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHH
Q psy4740           2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQ-SANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSF   80 (147)
Q Consensus         2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~   80 (147)
                      .++.+++.||++||+.+..+..+.++........  + +.+..++..++.|++.+...+....++.|..|+++|++..++
T Consensus       264 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  341 (365)
T TIGR00900       264 ALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLT--PPNFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGA  341 (365)
T ss_pred             HHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhh--chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            3567899999999999888877777777666665  4 467778888999999998889999999999999999999999


Q ss_pred             HHhhhhhHHHHHHHHHHHHHhh
Q psy4740          81 VFAGNQIGTVFSSFLSGFLLKY  102 (147)
Q Consensus        81 ~~~~~~~g~~~~~~~~~~l~~~  102 (147)
                      .+...+++..++|.+.+.+.+.
T Consensus       342 ~~~~~~~~~~~g~~~~g~l~~~  363 (365)
T TIGR00900       342 QFSLSHAAWPLGLILAGPLADH  363 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999876

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.12  E-value=9.9e-10  Score=78.20  Aligned_cols=112  Identities=14%  Similarity=0.165  Sum_probs=89.2

Q ss_pred             cchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHHH
Q psy4740           3 IPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVF   82 (147)
Q Consensus         3 ~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~   82 (147)
                      ++.+++.||+|+|+.+..+.+..++........  ++.+.+++..++.|++.+...+....+..+. +++++++..+..+
T Consensus       258 ~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  334 (382)
T PRK11128        258 AFSNRLFRRWSARDLLLLSAICGVVRWGLMGST--TALPWLIVIQILHCGTFTVCHLAAMRYIAAR-PGSEVIRLQALYS  334 (382)
T ss_pred             HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHhhhHHHHHHHH
Confidence            567899999999999998888888877766666  7788888889999999888888888888886 5666788888876


Q ss_pred             -hhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHH
Q psy4740          83 -AGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVL  120 (147)
Q Consensus        83 -~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  120 (147)
                       ....+|..++|.++|.+.+.  .++ ..++..+.+.++
T Consensus       335 ~~~~~~g~~ig~~i~G~l~~~--~g~-~~~~~~~~~~~~  370 (382)
T PRK11128        335 ALAMGGSIAIMTVLSGFLYQH--LGA-GVFWVMALVALP  370 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHh--ccH-HHHHHHHHHHHH
Confidence             45677889999999999998  566 456665555443

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.12  E-value=1.1e-09  Score=78.16  Aligned_cols=127  Identities=14%  Similarity=0.059  Sum_probs=83.2

Q ss_pred             cch-hhhhhhhcchHHHHHHHHHH-HHHHHHhh-hccccc-HHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHH
Q psy4740           3 IPG-GLLAQKFGGKHTLGFGILST-AIFTLLTP-FAARQS-ANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIG   78 (147)
Q Consensus         3 ~~~-g~l~d~~gr~~~~~~~~~~~-~~~~~~~~-~~~~~~-~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~   78 (147)
                      |++ ++..||+||||..++...+. +....... .....+ ..+.+....+..+..+...+....+..|..++++++...
T Consensus        56 p~~~~~~~~~~g~r~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~  135 (390)
T TIGR02718        56 PLVDNWWSWRLGRRRSWVLPMQCLVSACLASLALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGN  135 (390)
T ss_pred             HHHhccccccCCcchhHHHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHH
Confidence            344 44678889888865554332 21122222 111122 333344444455556666666777888888888888888


Q ss_pred             HHHHhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhccC
Q psy4740          79 SFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYN  131 (147)
Q Consensus        79 ~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (147)
                      +.......+|..+++...+.+.+.  .+||..|++.++..++..+..++..|+
T Consensus       136 ~~~~~g~~lG~~~g~~~~~~l~~~--~gw~~~f~~~a~l~~~~~~~~~~~~~~  186 (390)
T TIGR02718       136 AVQIAGVMIGFFGGGAGTLVLFGK--FGQRPAFLLVACVPLASLVCVLWLKDR  186 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH--hCHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            888888888999998888888888  799999999998877655555544444

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PRK09669 putative symporter YagG; Provisional

Probab=99.11  E-value=1.8e-09  Score=78.41  Aligned_cols=131  Identities=18%  Similarity=0.218  Sum_probs=87.6

Q ss_pred             Ccchhhhhhh----hcc-hHHHHHHHHHHHHHHHHhhhccc----ccHHHHHHHHHHHhhccccCcccHHHHhhhhc-CC
Q psy4740           2 HIPGGLLAQK----FGG-KHTLGFGILSTAIFTLLTPFAAR----QSANWLIALRFFEGLGEGTTFPALNTLLAQWV-PP   71 (147)
Q Consensus         2 ~~~~g~l~d~----~gr-~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~-~~   71 (147)
                      .|+.|+++||    +|| |+.++++.+..++...+....+.    ......++..++.+.+......+..++.+|+. ++
T Consensus        62 dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~  141 (444)
T PRK09669         62 DPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKIIYACVTYILLSLVYTAINVPYCAMPGAITNDP  141 (444)
T ss_pred             cceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCH
Confidence            5789999998    776 45566676666666655443321    12345555666667766677777888999987 55


Q ss_pred             cchhHHHHHHHhhhhhHHHHHHHHHHHHHhhc-----CCChhHHHHHHHHHHHHHHHHHHhhccCC
Q psy4740          72 TERGKIGSFVFAGNQIGTVFSSFLSGFLLKYT-----DGDWPEIFYLFGILGVLWFVAWCFLCYND  132 (147)
Q Consensus        72 ~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (147)
                      ++|.+..+......++|..+++.+...+....     ..+|+..+.+.+++.++..+..++..+|+
T Consensus       142 ~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~v~~~~~~~~~~e~  207 (444)
T PRK09669        142 RERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLGVVLFFCCFFMTKER  207 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHhCCeEEe
Confidence            88998888888888888887776655444321     14688888877777766555555554543

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.11  E-value=6e-10  Score=80.71  Aligned_cols=130  Identities=12%  Similarity=0.085  Sum_probs=80.7

Q ss_pred             CcchhhhhhhhcchHHHHHHHHHHH---HHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHH
Q psy4740           2 HIPGGLLAQKFGGKHTLGFGILSTA---IFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIG   78 (147)
Q Consensus         2 ~~~~g~l~d~~gr~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~   78 (147)
                      ++..|+++||+++++....+.....   ++..........+.+......++.|.+.............|.+|+++|+++.
T Consensus       304 ~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~  383 (438)
T TIGR00712       304 TLLCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYWMNPAGNPLVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAA  383 (438)
T ss_pred             HHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHccHHHHHHHHHHHhcChhheeeeh
Confidence            4578999999965432222222211   1112111211123333333344445432221122234577999999999999


Q ss_pred             HHHHhhhhhHH-HHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhccCCC
Q psy4740          79 SFVFAGNQIGT-VFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDP  133 (147)
Q Consensus        79 ~~~~~~~~~g~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (147)
                      |+.+.....++ .++|.+.+.+.++  .+|...+++.....++..+..++..+|++
T Consensus       384 g~~~~~~~~gg~~~gp~l~G~l~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  437 (438)
T TIGR00712       384 GFTGLFGYLGGSVAASAIVGYTVDF--FGWDGGFMVMIGGSILAVILLIVVMIGEK  437 (438)
T ss_pred             hhhchHHHhhhhhhcchhHHHHHHh--ccchHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            99988877764 6899999999998  68999998888777777777777766643

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.08  E-value=6.5e-10  Score=81.41  Aligned_cols=121  Identities=16%  Similarity=0.101  Sum_probs=72.3

Q ss_pred             Ccchhhhhhhhcch-------HHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcch
Q psy4740           2 HIPGGLLAQKFGGK-------HTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTER   74 (147)
Q Consensus         2 ~~~~g~l~d~~gr~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r   74 (147)
                      +++.|+++||++||       ........+..+........  ++....++..++.+++.+...+...++..+.. +++|
T Consensus       305 ~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~  381 (476)
T PLN00028        305 RPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGRA--NSLGAAIVVMILFSIFVQAACGATFGIVPFVS-RRSL  381 (476)
T ss_pred             HhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhccc--chHHHHHHHHHHHHHHHHHhhhhhcccCcccC-hhhc
Confidence            46789999999865       22223333333333333333  44444444455555544444444445555654 5789


Q ss_pred             hHHHHHHHhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhh
Q psy4740          75 GKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFL  128 (147)
Q Consensus        75 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (147)
                      +...++.+...++|+.+++.+.+ ..+.  .+|+..|++.+++.++..++.++.
T Consensus       382 g~~~g~~~~~g~lg~~i~~~l~~-~~~~--~~y~~~f~~~~~~~~i~~~~~~~~  432 (476)
T PLN00028        382 GVISGLTGAGGNVGAVLTQLLFF-TGSS--YSTETGISLMGVMIIACTLPVAFI  432 (476)
T ss_pred             hhhhhhhhccccHHHHHHHHHHH-hcCC--ccHhhHHHHHHHHHHHHHHHHHhe
Confidence            99999988877777777776543 1111  369999998887777765555444

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.08  E-value=8.9e-10  Score=79.00  Aligned_cols=117  Identities=21%  Similarity=0.260  Sum_probs=86.6

Q ss_pred             hhhhh-hhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHHHhh
Q psy4740           6 GLLAQ-KFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVFAG   84 (147)
Q Consensus         6 g~l~d-~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~   84 (147)
                      +++.| |++.++.+..+.++.+++.......  ++++...+...+.+.+.+...+...+.+.|..|+++|++.+++.+..
T Consensus       264 ~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~  341 (400)
T PRK11646        264 ARWSEKRFRLEHRLMAGLLIMSLSMFPIGMV--SNLQQLFTLICLFYIGSIIAEPARETLSASLADARARGSYMGFSRLG  341 (400)
T ss_pred             HHHHHHhcchhHHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHHHHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHH
Confidence            45555 4666666777777777777666666  66666666777788888877888899999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHHHhhcC-CC-hhHHHHHHHHHHHHHHHH
Q psy4740          85 NQIGTVFSSFLSGFLLKYTD-GD-WPEIFYLFGILGVLWFVA  124 (147)
Q Consensus        85 ~~~g~~~~~~~~~~l~~~~~-~~-~~~~~~~~~~~~~~~~~~  124 (147)
                      ..+|..++|.+++.+.+..+ .+ ....++..+...++..+.
T Consensus       342 ~~~g~~ig~~l~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (400)
T PRK11646        342 LALGGAIGYIGGGWLFDLGKALNQPELPWMMLGIIGLITLLA  383 (400)
T ss_pred             HHHHHHhcccchHHHHHHHhhcCCcchHHHHHHHHHHHHHHH
Confidence            99999999999999998742 12 244555545554444333

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=99.08  E-value=3.9e-09  Score=73.55  Aligned_cols=129  Identities=15%  Similarity=0.068  Sum_probs=91.8

Q ss_pred             cchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHH-hhhh----cCCcchhHH
Q psy4740           3 IPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTL-LAQW----VPPTERGKI   77 (147)
Q Consensus         3 ~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~-~~~~----~~~~~r~~~   77 (147)
                      ++.|.++||+|||+.-+.-+++..+.++.. ..  +++..++++|++.|++.+..+..-.++ +.|.    +|++..+..
T Consensus        87 ~~~G~laD~~Grk~~cl~~cily~~scl~k-~~--~~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~t  163 (354)
T PF05631_consen   87 TFVGSLADRYGRKKACLLFCILYSLSCLTK-HS--SNYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDT  163 (354)
T ss_pred             HHHHHHHHhcCchHHHHHHHHHHHHHHHHH-hc--cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHH
Confidence            568999999999999988888888888643 23  789999999999999999888877775 4554    344444455


Q ss_pred             HHHHH-hhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhccCCCC
Q psy4740          78 GSFVF-AGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPA  134 (147)
Q Consensus        78 ~~~~~-~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (147)
                      ++... ..+++-.+.+..++..+.+..+.+-..+|.....+.++..+......+|+..
T Consensus       164 F~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~~~I~~~W~ENyg  221 (354)
T PF05631_consen  164 FSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAAVLILKTWPENYG  221 (354)
T ss_pred             HHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHhcccccCC
Confidence            55444 3344445556666667776644455778888888877766666655666543

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.07  E-value=4.4e-09  Score=75.50  Aligned_cols=126  Identities=21%  Similarity=0.368  Sum_probs=95.4

Q ss_pred             chhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHH----HHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHH
Q psy4740           4 PGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWL----IALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGS   79 (147)
Q Consensus         4 ~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~   79 (147)
                      ..+++..|+|.|+++.++.+..++=..+.+... ++.+..    .....+.|+..+..+.....++.+..|++.|+++.+
T Consensus       262 ~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~-~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~  340 (400)
T PF03825_consen  262 FSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFS-DPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQG  340 (400)
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhc-CCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHH
Confidence            568889999999999999999888887776652 222222    233456899999999999999999999999999999


Q ss_pred             HHHh-hhhhHHHHHHHHHHHHHhhcC----CChhHHHHHHHHHHHHHHHHHHhhcc
Q psy4740          80 FVFA-GNQIGTVFSSFLSGFLLKYTD----GDWPEIFYLFGILGVLWFVAWCFLCY  130 (147)
Q Consensus        80 ~~~~-~~~~g~~~~~~~~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (147)
                      +++. ..++|..++..++|.+.++.+    ..|...+.+.+...++..+...++.+
T Consensus       341 l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~~fk  396 (400)
T PF03825_consen  341 LYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVILFK  396 (400)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            9877 578999999999999999742    23445555666655555444444433

>KOG0569|consensus

Probab=99.07  E-value=4.8e-09  Score=76.37  Aligned_cols=131  Identities=18%  Similarity=0.090  Sum_probs=94.7

Q ss_pred             cchhhhhhhhcchHHHHHHHHHHHHHHHHhhhccc-cc-H--H---HHHHHHHHHhhcccc-CcccHHHHhhhhcCCcch
Q psy4740           3 IPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAAR-QS-A--N---WLIALRFFEGLGEGT-TFPALNTLLAQWVPPTER   74 (147)
Q Consensus         3 ~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~-~~-~--~---~~~~~~~l~g~~~~~-~~~~~~~~~~~~~~~~~r   74 (147)
                      +++.++.||.|||+.++.+..+..+...++..... .+ .  +   ..+++.++..+..+. .-|...-+.+|++|++.|
T Consensus       323 ~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R  402 (485)
T KOG0569|consen  323 LVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSAR  402 (485)
T ss_pred             HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccch
Confidence            46788999999999999998888888877754411 11 1  1   122333333333222 356778889999999999


Q ss_pred             hHHHHHHHhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhccCCCCCC
Q psy4740          75 GKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPASH  136 (147)
Q Consensus        75 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (147)
                      ..+++.......+...+.....-.+.+.  .|- ..|.+..++.++..+..+...||++.+.
T Consensus       403 ~aa~s~~~~~~w~~~fiv~~~fp~l~~~--~g~-~~filF~i~~~~~~i~~~~~lPETkgr~  461 (485)
T KOG0569|consen  403 SAAQSVATAVNWLSNFIVGFAFPPLQNV--IGP-YVFILFVIPLAIFLIYLYRYLPETKGRT  461 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH--hcc-hhhHHHHHHHHHHHHHHHHhCcccCCCC
Confidence            9999998888888887777777767666  343 6777888888888888888999987654

>PRK09848 glucuronide transporter; Provisional

Probab=99.06  E-value=7.2e-10  Score=80.47  Aligned_cols=101  Identities=19%  Similarity=0.129  Sum_probs=82.2

Q ss_pred             CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCc-------ch
Q psy4740           2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPT-------ER   74 (147)
Q Consensus         2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~-------~r   74 (147)
                      +++++++.||+|+|+.+.++.++..++.....+....+.+.+.+..++.|++.+...+...+..+|..|.+       ++
T Consensus       281 ~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~  360 (448)
T PRK09848        281 APLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIE  360 (448)
T ss_pred             HHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccch
Confidence            35678999999999999999888888777666543245666667778889999988888888888887654       45


Q ss_pred             hHHHHHHHhhhhhHHHHHHHHHHHHHhh
Q psy4740          75 GKIGSFVFAGNQIGTVFSSFLSGFLLKY  102 (147)
Q Consensus        75 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~  102 (147)
                      |...+..+....+|..+++.+.+.+.+.
T Consensus       361 G~~~~~~~~~~klg~aig~~i~g~~l~~  388 (448)
T PRK09848        361 GLTYSLFSFTRKCGQAIGGSIPAFILGL  388 (448)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8889999999999999999999887765

>TIGR00889 2A0110 nucleoside transporter

Probab=99.04  E-value=3.6e-09  Score=76.34  Aligned_cols=120  Identities=13%  Similarity=0.081  Sum_probs=77.6

Q ss_pred             Ccchhhhhhhhcc-hHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhh--------hhcCCc
Q psy4740           2 HIPGGLLAQKFGG-KHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLA--------QWVPPT   72 (147)
Q Consensus         2 ~~~~g~l~d~~gr-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~--------~~~~~~   72 (147)
                      ++++|+++||+|+ |+++..+.+...+......+.  ++++.+.+.+++.|++.+...+...+...        |.....
T Consensus        55 ~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~  132 (418)
T TIGR00889        55 PILVGIIADKWLSAQKVYAVCHFAGALLLFFAAQV--TTPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDF  132 (418)
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcC
Confidence            6789999999965 778888888777777777766  78888888999888877766655544432        222223


Q ss_pred             chhHHHHHHHhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhccCCC
Q psy4740          73 ERGKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDP  133 (147)
Q Consensus        73 ~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (147)
                      .|.+..|      .+|..++|.+++.+...  ..|. +|++.++..++..+. .+..||.|
T Consensus       133 ~~~r~~G------~lG~~ig~~l~g~l~~~--~~~~-~f~~~~~~~~~~~~~-~~~~~e~~  183 (418)
T TIGR00889       133 PPIRVMG------TIGFIAAMWAVSLLDIE--LSNI-QLYITAGSSALLGVF-ALTLPDIP  183 (418)
T ss_pred             CCeeeeh------hHHHHHHHHHHHHhccc--chhH-HHHHHHHHHHHHHHH-HhcCCCCC
Confidence            3444444      36788888888877222  2344 455555555554443 34556654

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.04  E-value=7e-09  Score=74.35  Aligned_cols=118  Identities=17%  Similarity=0.200  Sum_probs=76.9

Q ss_pred             CcchhhhhhhhcchHHHHHHHHHHHHHHHHh---hhcccccHHHHHHHHH----HHhhccccCcccHHHHhhhhcCCcch
Q psy4740           2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLT---PFAARQSANWLIALRF----FEGLGEGTTFPALNTLLAQWVPPTER   74 (147)
Q Consensus         2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~----l~g~~~~~~~~~~~~~~~~~~~~~~r   74 (147)
                      .++.|++.||+|+|+.+..+.....+.....   ... .++.+.+++..+    ..|++.+...+....++.+.+|.+. 
T Consensus       263 ~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-  340 (402)
T PRK11902        263 ALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVT-PKHLWTMALAIGIENLCGGMGTAAFVALLMALCNRSFSATQ-  340 (402)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhc-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHH-
Confidence            3567999999999998877666655554333   222 134444444443    3444455445555556666666444 


Q ss_pred             hHHHHHHHhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHH
Q psy4740          75 GKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWC  126 (147)
Q Consensus        75 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (147)
                         .+..+...+++...+..+++.+.+.  .||+..|.+.+++.++..+..+
T Consensus       341 ---~~~~~~~~~l~~~~~~~~~G~l~~~--~G~~~~f~~~~~~~~~~~~~~~  387 (402)
T PRK11902        341 ---YALLSALASVGRVYVGPTSGYLVEA--YGWPGFYLMTVVIALPGLALLW  387 (402)
T ss_pred             ---HHHHHHHHHHHHHHHHHHHHHHHHH--hChHHHHHHHHHHHHHHHHHHH
Confidence               4555555667777677789999998  7999999998888877555443

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.03  E-value=1.3e-08  Score=72.29  Aligned_cols=125  Identities=23%  Similarity=0.292  Sum_probs=95.7

Q ss_pred             CCcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHH
Q psy4740           1 MHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSF   80 (147)
Q Consensus         1 ~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~   80 (147)
                      |++..|+++|| +.|+.+.....+.++......+.. ++.+...+..++.|+.............++ ..+|.+..+.++
T Consensus       263 Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~~~~-~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~-~~p~~~~~a~sl  339 (394)
T COG2814         263 GNLLGGRLADR-GPRRALIAALLLLALALLALTFTG-ASPALALALLFLWGFAFSPALQGLQTRLAR-LAPDAADLAGSL  339 (394)
T ss_pred             HHHHHhhhccc-cchhHHHHHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHHHhhhhhhHHHHHhcc-cCCCchHHHHHH
Confidence            35688999999 888888888777766666655442 444555666666777766555555555555 446899999999


Q ss_pred             HHhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhcc
Q psy4740          81 VFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCY  130 (147)
Q Consensus        81 ~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (147)
                      +....|+|..+|..+++.+.++  .++....++.++..+......+...+
T Consensus       340 ~~aa~nlgia~GA~lGG~v~~~--~g~~~~~~~~a~l~~~a~~~~~~~~~  387 (394)
T COG2814         340 NVAAFNLGIALGAALGGLVLDA--LGYAATGWVGAALLLLALLLALLSAR  387 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHh--hchHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999  89999999999888876666555433

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.02  E-value=7.1e-09  Score=75.94  Aligned_cols=131  Identities=9%  Similarity=0.012  Sum_probs=85.3

Q ss_pred             Ccchhhhhh----hhcc-hHHHHHHHHHHHHHHHHhhhccc--c--cHHHHHHHHHHHhhccccCcccHHHHhhhhc-CC
Q psy4740           2 HIPGGLLAQ----KFGG-KHTLGFGILSTAIFTLLTPFAAR--Q--SANWLIALRFFEGLGEGTTFPALNTLLAQWV-PP   71 (147)
Q Consensus         2 ~~~~g~l~d----~~gr-~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~-~~   71 (147)
                      .|+.|+++|    |+|| |+.++++.+..++...++...+.  .  .+..+.+..++.+++.........++..|.. ++
T Consensus        59 dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~  138 (473)
T PRK10429         59 DPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSAHLFEGTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDK  138 (473)
T ss_pred             hchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCH
Confidence            578999999    6698 56666777777776655543210  1  1334455556677788888888899999998 68


Q ss_pred             cchhHHHHHHHhhhhhHHHHHHHHHHHHHhhc-----CCChhHHHHHHHHHHHHHHHHHHhhccCC
Q psy4740          72 TERGKIGSFVFAGNQIGTVFSSFLSGFLLKYT-----DGDWPEIFYLFGILGVLWFVAWCFLCYND  132 (147)
Q Consensus        72 ~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (147)
                      ++|.+..+......++|..+.+.+...+.+..     ..+|+....+.+++.++..+...+..+|+
T Consensus       139 ~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~e~  204 (473)
T PRK10429        139 REREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIAFFIVSTIITLRNVHEV  204 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHcCceec
Confidence            89999888877777777666655544332221     12566666666666655455555445554

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.02  E-value=2.4e-09  Score=85.49  Aligned_cols=115  Identities=22%  Similarity=0.268  Sum_probs=91.2

Q ss_pred             CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHH
Q psy4740           2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFV   81 (147)
Q Consensus         2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~   81 (147)
                      +++.|+++||+++++.+.++.++.+++.+.....  .+.+.+++..++.|++.+...+...+++.+..|++.|++++++.
T Consensus       286 ~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~  363 (1146)
T PRK08633        286 SLLAGRLSGRHIELGLVPLGALGLALSLFLLPTA--PSLASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKELGKVLAAN  363 (1146)
T ss_pred             HHHHHHHhCCceEccchhHHHHHHHHHHHHHHHh--hhHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccchhhhhHHH
Confidence            4578899999999988888888777777776666  67777778889999999888888899999999999999999999


Q ss_pred             HhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHH
Q psy4740          82 FAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGV  119 (147)
Q Consensus        82 ~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  119 (147)
                      +....+|..+++.+++.+... ..++...+++.+.+.+
T Consensus       364 ~~~~~lg~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~  400 (1146)
T PRK08633        364 NFLQNVGMLLFLALTTLFSGL-GLSPAGLFYLIALVTL  400 (1146)
T ss_pred             HHHHHHHHHHHHHHHHHHHHh-ccCHHHHHHHHHHHHH
Confidence            999999998888777766543 2355556665554443

>KOG2816|consensus

Probab=99.01  E-value=4.9e-09  Score=76.29  Aligned_cols=124  Identities=19%  Similarity=0.226  Sum_probs=101.9

Q ss_pred             CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhh--ccccCcccHHHHhhhhcCCcchhHHHH
Q psy4740           2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGL--GEGTTFPALNTLLAQWVPPTERGKIGS   79 (147)
Q Consensus         2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~--~~~~~~~~~~~~~~~~~~~~~r~~~~~   79 (147)
                      .+..|.++||+|||..+.+..+...+..+...+.  . ++ +.+   +.+.  +.+.......++++|....++|....+
T Consensus        79 s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~--~-~~-~~~---~~~l~g~~~~~~s~~~a~vadis~~~~R~~~~g  151 (463)
T KOG2816|consen   79 SPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQ--G-YW-FFL---LLGLSGGFSAIFSVGFAYVADISSEEERSSSIG  151 (463)
T ss_pred             HhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHH--H-HH-Hhh---hcccccchhhhhhhhhhheeeccchhHHHHHHH
Confidence            4678999999999999999888888877776654  2 22 322   3443  344556778889999999999999999


Q ss_pred             HHHhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhccCCCC
Q psy4740          80 FVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPA  134 (147)
Q Consensus        80 ~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (147)
                      +.+.....+..++|.+++.+.+.  .+.-..|.+..+...+..+...+..||+..
T Consensus       152 ll~~~~~~~~~~~p~~~~~~~~~--~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~  204 (463)
T KOG2816|consen  152 LLSGTFGAGLVIGPALGGYLVKF--LGIALVFLIAAASGILSLLYMLLFLPESLQ  204 (463)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHh--cCchHHHHHHHHHHHHHHHHHhhccccccC
Confidence            99999999999999999999988  788899999999999888888888888544

>TIGR00788 fbt folate/biopterin transporter

Probab=99.00  E-value=3.5e-09  Score=77.48  Aligned_cols=124  Identities=20%  Similarity=0.176  Sum_probs=87.4

Q ss_pred             cchhhhhhhhc-----chHHHHHHHHHHH-HHHHHhhhccccc-HHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchh
Q psy4740           3 IPGGLLAQKFG-----GKHTLGFGILSTA-IFTLLTPFAARQS-ANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERG   75 (147)
Q Consensus         3 ~~~g~l~d~~g-----r~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~   75 (147)
                      +++|.++||++     ||+.+.++.++.. +........  ++ .....+..++.+++.+...+...++..|..+ +++.
T Consensus        78 ~l~g~l~D~~~i~G~rRr~~l~~~~~l~~~~~~~~l~~~--~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~  154 (468)
T TIGR00788        78 PFAGVMSDTFPLFGYTKRWYLVLSGLLGSAILYGLLPGK--VSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPS  154 (468)
T ss_pred             HHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHhcccc--cchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCC
Confidence            56999999997     7777777766653 332222222  33 3344447788888888888899999999988 5444


Q ss_pred             HH---HHHHHhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhccCC
Q psy4740          76 KI---GSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYND  132 (147)
Q Consensus        76 ~~---~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (147)
                      ..   .+..+...++|..+++.+++.+.+.  .+|+..|++.+++.++. .....+.+|+
T Consensus       155 ~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~--~~~~~~f~~~a~l~ll~-~~~~~~~~E~  211 (468)
T TIGR00788       155 AGPSLVSWMWGASATGGLISSLLGGPLLDK--TLTRILFLITAALLLLQ-LFVSNLSKER  211 (468)
T ss_pred             cCCCeeeHHHHHHHHHHHHHHHHHHHHHHh--cCcchHHHHHHHHHHHH-HHHHHhcccc
Confidence            33   3344444568999999999999888  79999999988887765 3334455554

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>TIGR00895 2A0115 benzoate transport

Probab=99.00  E-value=1.1e-09  Score=77.67  Aligned_cols=95  Identities=23%  Similarity=0.311  Sum_probs=74.7

Q ss_pred             CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhh-cccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHH
Q psy4740           2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPF-AARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSF   80 (147)
Q Consensus         2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~   80 (147)
                      .++.+++.||+|||+.+.... +..+....... .  ++....++..++.|++.+...+....++.|.+|+++|++..++
T Consensus       302 ~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~  378 (398)
T TIGR00895       302 SIIFGWLADRLGPRVTALLLL-LGAVFAVLVGSTL--FSPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAIRATGVGW  378 (398)
T ss_pred             HHHHHHHHhhcchHHHHHHHH-HHHHHHHHHHHHh--hCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHH
Confidence            457899999999995544333 33333333322 3  5566677788889999888889999999999999999999999


Q ss_pred             HHhhhhhHHHHHHHHHHHH
Q psy4740          81 VFAGNQIGTVFSSFLSGFL   99 (147)
Q Consensus        81 ~~~~~~~g~~~~~~~~~~l   99 (147)
                      .+....+|..++|.+.|.+
T Consensus       379 ~~~~~~~g~~~g~~~~G~l  397 (398)
T TIGR00895       379 AIGIGRLGAIIGPILAGYL  397 (398)
T ss_pred             HHHHHHHHHHHHHHhHHhc
Confidence            9999999999999998865

>PRK10091 MFS transport protein AraJ; Provisional

Probab=98.99  E-value=1.1e-08  Score=72.98  Aligned_cols=123  Identities=11%  Similarity=0.075  Sum_probs=80.5

Q ss_pred             CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHH-HhhhhcCCcchhHHHHH
Q psy4740           2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNT-LLAQWVPPTERGKIGSF   80 (147)
Q Consensus         2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~-~~~~~~~~~~r~~~~~~   80 (147)
                      +++.+++.||+|+|+.+..+..+.+++.+...... ++.+...+..++.+.+.....+.... ...+..+++.++..  .
T Consensus       252 ~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~  328 (382)
T PRK10091        252 NLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFFG-GMKTASLIFAFICCAGLFALSAPLQILLLQNAKGGELLGAA--G  328 (382)
T ss_pred             hHHHheeccccCchhHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcchHHHHH--H
Confidence            56789999999999998888777777665543321 34444555555666655444443333 34444444555544  3


Q ss_pred             HHhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhh
Q psy4740          81 VFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFL  128 (147)
Q Consensus        81 ~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (147)
                      .+....+|..++|.+++.+.+.. .+|+..+.+.+...+.........
T Consensus       329 ~~~~~~~g~~~Gp~~~G~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  375 (382)
T PRK10091        329 GQIAFNLGSAIGAYCGGMMLTLG-LAYNYVALPAALLSFAAMSSLLLY  375 (382)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHcc-cCcchHHHHHHHHHHHHHHHHHHH
Confidence            45677899999999999998853 478988888776666544444433

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=98.97  E-value=2.1e-08  Score=67.47  Aligned_cols=100  Identities=16%  Similarity=0.065  Sum_probs=74.5

Q ss_pred             CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhccc-----ccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhH
Q psy4740           2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAAR-----QSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGK   76 (147)
Q Consensus         2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~   76 (147)
                      .++.|.+.|++|++.++.++.+...++..+.....+     .+++.+.+..++.|.+.+...........+.|| ++||.
T Consensus        53 G~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~  131 (250)
T PF06813_consen   53 GILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGT  131 (250)
T ss_pred             cHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCc-cccCc
Confidence            357899999999999999999999999988765521     245555555566666655544555555556787 58999


Q ss_pred             HHHHHHhhhhhHHHHHHHHHHHHHhh
Q psy4740          77 IGSFVFAGNQIGTVFSSFLSGFLLKY  102 (147)
Q Consensus        77 ~~~~~~~~~~~g~~~~~~~~~~l~~~  102 (147)
                      +.++.-....+++.+-..+...+.+.
T Consensus       132 vvgilk~~~GLSaai~t~i~~~~f~~  157 (250)
T PF06813_consen  132 VVGILKGFFGLSAAIFTQIYSAFFGD  157 (250)
T ss_pred             eehhhhHHHHhHHHHHHHHHHHHcCC
Confidence            99999988888888777777666555

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=98.97  E-value=1.1e-08  Score=72.36  Aligned_cols=128  Identities=19%  Similarity=0.175  Sum_probs=91.0

Q ss_pred             CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhccc-----ccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhH
Q psy4740           2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAAR-----QSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGK   76 (147)
Q Consensus         2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~   76 (147)
                      .+.+|+++||+|.+|++.......+++........+     .+....+...+..++..+.........+...+|+ +-|.
T Consensus       271 Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~-~~G~  349 (417)
T COG2223         271 RPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFLTGFGHGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPK-ETGA  349 (417)
T ss_pred             HhccchhhhhccchhHHHHHHHHHHHHHHHHHccccccccCcchHHHHHHHHHHHHHhccCcchheeechHHHHh-hhhH
Confidence            467899999999999999888888887777655421     2233333333333333333334455556666653 7789


Q ss_pred             HHHHHHhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhccC
Q psy4740          77 IGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYN  131 (147)
Q Consensus        77 ~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (147)
                      ..|+.....++|+.+-|...+...+.++ .+...|++.....++..+..+....+
T Consensus       350 v~G~vga~G~lGGf~lp~~~g~~~~~tg-~~~~~f~~~~~~~~~a~v~~~~~y~r  403 (417)
T COG2223         350 VTGIVGAIGGLGGFFLPLAFGVSLDLTG-SYTGAFMLLLAFYLVALVLTWALYAR  403 (417)
T ss_pred             HHHHHHHhccccccchhHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999865 69999999888888766655554433

>PRK09669 putative symporter YagG; Provisional

Probab=98.96  E-value=1.2e-08  Score=74.18  Aligned_cols=101  Identities=17%  Similarity=0.217  Sum_probs=77.9

Q ss_pred             cchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCC-------cchh
Q psy4740           3 IPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPP-------TERG   75 (147)
Q Consensus         3 ~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-------~~r~   75 (147)
                      +++++++||+|+|+.+.++.+..++..........++.+.+++..++.|++.+...+...+.++|..+.       +..|
T Consensus       282 ~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g  361 (444)
T PRK09669        282 LLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDG  361 (444)
T ss_pred             HHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcch
Confidence            467899999999999988877665544333333235666677778889999999999999999998752       3345


Q ss_pred             HHHHHHHhhhhhHHHHHHHHHHHHHhhc
Q psy4740          76 KIGSFVFAGNQIGTVFSSFLSGFLLKYT  103 (147)
Q Consensus        76 ~~~~~~~~~~~~g~~~~~~~~~~l~~~~  103 (147)
                      ...+..+....+|..+++.+.+.+.+..
T Consensus       362 ~~~s~~~~~~klg~alg~~i~g~ll~~~  389 (444)
T PRK09669        362 LVFSTNLFAIKLGLAIGGAVVGWILAWV  389 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            6778888899999999999999988763

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=98.96  E-value=2.1e-09  Score=77.35  Aligned_cols=114  Identities=17%  Similarity=0.119  Sum_probs=71.6

Q ss_pred             CcchhhhhhhhcchHH-HHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHH
Q psy4740           2 HIPGGLLAQKFGGKHT-LGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSF   80 (147)
Q Consensus         2 ~~~~g~l~d~~gr~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~   80 (147)
                      .+..|+++||+++|+. +........+...+....  ++....+....+.+.+.....+.......|.+|+++|+++.++
T Consensus       296 ~l~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~a~g~  373 (412)
T TIGR02332       296 MIWWSRHSDRLKERKHHTALPYLFAAAGWLLASAT--DHNLIQLLGIIMASMGSFSAMAIFWTTPDQSISLQARAIAIAV  373 (412)
T ss_pred             HHHHHHHhcccCccHHHHHHHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHHhhhhhhHHHhhcccccchHHHHHHHHH
Confidence            3568999999997764 333333333332222122  2222222222222333222233334455678999999999999


Q ss_pred             HHhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHH
Q psy4740          81 VFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILG  118 (147)
Q Consensus        81 ~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  118 (147)
                      .+...++|..++|.+.+.+.+..+ +|++.+++.++..
T Consensus       374 ~~~~~~~g~~~~p~~~g~i~~~~g-~~~~~~~~~~~~~  410 (412)
T TIGR02332       374 INATGNIGSALSPFLIGILKDATG-SFNSGLWFVAALL  410 (412)
T ss_pred             HHHhhhhhhhhhhhhcccccccCC-CCchhHHHHHHHH
Confidence            999999999999999999988732 5898888766543

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PF13347 MFS_2: MFS/sugar transport protein

Probab=98.96  E-value=2.7e-09  Score=77.14  Aligned_cols=130  Identities=19%  Similarity=0.364  Sum_probs=97.2

Q ss_pred             Ccchhhhhh----hhcchHH-HHHHHHHHHHHHHHhhhccc--c----cHHHHHHHHHHHhhccccCcccHHHHhhhhcC
Q psy4740           2 HIPGGLLAQ----KFGGKHT-LGFGILSTAIFTLLTPFAAR--Q----SANWLIALRFFEGLGEGTTFPALNTLLAQWVP   70 (147)
Q Consensus         2 ~~~~g~l~d----~~gr~~~-~~~~~~~~~~~~~~~~~~~~--~----~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~   70 (147)
                      .|+.|.++|    |+||||. ++.+.+..+++..++....+  .    ...++.+..++..++......+..++..|..+
T Consensus        54 dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~  133 (428)
T PF13347_consen   54 DPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAKLVWLFVFYILFDIAYTFVQIPYNALIPELTP  133 (428)
T ss_pred             CCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhHHHHHHHHHHHHHHhhhhccCchhhcCccccc
Confidence            578999999    8996655 45677887777777665411  1    22344666677788888889999999999987


Q ss_pred             -CcchhHHHHHHHhhhhhHHHHHHHHHHHHHhhcC-----CChhHHHHHHHHHHHHHHHHHHhhccC
Q psy4740          71 -PTERGKIGSFVFAGNQIGTVFSSFLSGFLLKYTD-----GDWPEIFYLFGILGVLWFVAWCFLCYN  131 (147)
Q Consensus        71 -~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (147)
                       +++|.+..+.......+|..+...+...+.+..+     .+|++...+.+++.++..+...+..+|
T Consensus       134 ~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~v~~~i~~~~~ke  200 (428)
T PF13347_consen  134 DPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGLVFFLITFFFVKE  200 (428)
T ss_pred             cHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHHHHhhhhhheeee
Confidence             4789999999888888888766677666654332     169999888888888877777777776

>KOG3762|consensus

Probab=98.93  E-value=2.5e-09  Score=77.81  Aligned_cols=118  Identities=16%  Similarity=0.266  Sum_probs=103.6

Q ss_pred             cchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHHH
Q psy4740           3 IPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVF   82 (147)
Q Consensus         3 ~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~   82 (147)
                      ++.+++.+|+|+-+++.+++....+=.......  +|+|+.+-..++.|+..+..+.+..+|++...||+.|.++.++..
T Consensus       424 ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L--~n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~  501 (618)
T KOG3762|consen  424 FFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYL--QNPWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQ  501 (618)
T ss_pred             HHHHHHHHHhcccceeeehhhHHHHHHHHHHHh--cCchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHH
Confidence            467899999999999999988888888877788  999999999999999999999999999999999999999999965


Q ss_pred             h-hhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHH
Q psy4740          83 A-GNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVA  124 (147)
Q Consensus        83 ~-~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  124 (147)
                      . ...+|..+|.++++.+.++  .+-+..|...++.+++.++.
T Consensus       502 g~f~GlG~g~GslIGG~~v~~--fg~~ttf~~~giAcl~~l~~  542 (618)
T KOG3762|consen  502 GIFHGLGKGLGSLIGGFVVER--FGARTTFRIFGIACLVTLAL  542 (618)
T ss_pred             HHhcccCcchhhhhhhhhhee--ehhHHHHHHHHHHHHHHHHH
Confidence            5 7889999999999999988  67788888777776664444

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=98.92  E-value=5.1e-09  Score=76.46  Aligned_cols=101  Identities=19%  Similarity=0.251  Sum_probs=83.8

Q ss_pred             CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhc--ccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHH
Q psy4740           2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFA--ARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGS   79 (147)
Q Consensus         2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~   79 (147)
                      +++.|++.||+|||+.+..+..+.+++...+...  ...++.......++.|++.+...+.......+..|+++|+++.+
T Consensus       308 ~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~  387 (485)
T TIGR00711       308 SPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTFTPDTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSS  387 (485)
T ss_pred             HHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHH
Confidence            4678999999999999998888888877766522  22355666677888999988887777777888899999999999


Q ss_pred             HHHhhhhhHHHHHHHHHHHHHhh
Q psy4740          80 FVFAGNQIGTVFSSFLSGFLLKY  102 (147)
Q Consensus        80 ~~~~~~~~g~~~~~~~~~~l~~~  102 (147)
                      +.+...++|..+++.+.+.+.++
T Consensus       388 ~~~~~~~~g~~ig~~i~g~~~~~  410 (485)
T TIGR00711       388 LSNFTRQLGGSIGTALITTILTN  410 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999988775

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=98.91  E-value=5.4e-08  Score=68.02  Aligned_cols=122  Identities=19%  Similarity=0.281  Sum_probs=105.1

Q ss_pred             CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHH
Q psy4740           2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFV   81 (147)
Q Consensus         2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~   81 (147)
                      +++..+++.|+|.++.+..++++.+++..+=...   +...++.+-.+.|.+.+......++.+.+.|| ++-+..+++|
T Consensus        64 ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~~~---~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fp-k~~~~mtglY  139 (395)
T COG2807          64 APAAPRLARRFGEERSLFLALLLIAAGILIRSLG---GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFP-KRVGLMTGLY  139 (395)
T ss_pred             HhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc---cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcc-cchhhHHhHH
Confidence            4678899999999999999999999998875443   45677888889999999889999999999997 5668999999


Q ss_pred             HhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhh
Q psy4740          82 FAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFL  128 (147)
Q Consensus        82 ~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (147)
                      ....+++..+++.+.-.+.++. .+||....+.+.+.++..+.++..
T Consensus       140 s~sl~~~aaLaa~lavpla~~~-~gW~~aL~~WAl~allAl~~WlPq  185 (395)
T COG2807         140 STSLGAGAALAAALAVPLAQHS-GGWRGALGFWALLALLALLIWLPQ  185 (395)
T ss_pred             HHHHHHHHHHHhhhhhHHHHhh-ccHHHHHHHHHHHHHHHHHHHhhh
Confidence            9999999999999999998884 489999999999998877666554

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=98.91  E-value=2.2e-08  Score=71.43  Aligned_cols=106  Identities=13%  Similarity=-0.019  Sum_probs=64.0

Q ss_pred             CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHH
Q psy4740           2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFV   81 (147)
Q Consensus         2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~   81 (147)
                      +++.+++.||+|||+.+..+..+..++.......  ++....+....+.+.+.+...+.  ....+..|.++|+   +..
T Consensus       256 ~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~g~~~~~~~--~~~~~~~~~~~~~---g~~  328 (392)
T PRK10473        256 SFSTPFALGIFKPRTLMLTSQVLFLAAGITLALS--PSHAVSLFGITLICAGFSVGFGV--AMSQALGPFSLRA---GVA  328 (392)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhHH--HHHHHhccCcccc---cHH
Confidence            3567899999999999998888887777766655  33333333333433333333322  3334455655554   444


Q ss_pred             HhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHH
Q psy4740          82 FAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGI  116 (147)
Q Consensus        82 ~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~  116 (147)
                      .....++..+++.+++.+.+.  .++.......+.
T Consensus       329 ~~~~~~~~~~g~~~~~~l~~~--~g~~~~~~~~~~  361 (392)
T PRK10473        329 SSTLGIAQVCGSSLWIWLAAV--LGISAWNMLIGI  361 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH--hccchhHHHHHH
Confidence            445567777788888888776  455543333333

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=98.91  E-value=7.7e-09  Score=76.16  Aligned_cols=101  Identities=15%  Similarity=0.168  Sum_probs=83.1

Q ss_pred             CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhc-ccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHH
Q psy4740           2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFA-ARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSF   80 (147)
Q Consensus         2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~   80 (147)
                      .++.|++.||+|+|+.+..+.++.+++....... ..++.+......++.|++.+...+.....+.+..|+++++.+.++
T Consensus       312 ~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~  391 (495)
T PRK14995        312 GPIAGILVSRLGLRLVATGGMALSALSFYGLAMTDFSTQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEKAAAAGAI  391 (495)
T ss_pred             HHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHH
Confidence            4678999999999999888888877776655433 123455566778889999998888888888999999999999999


Q ss_pred             HHhhhhhHHHHHHHHHHHHHhh
Q psy4740          81 VFAGNQIGTVFSSFLSGFLLKY  102 (147)
Q Consensus        81 ~~~~~~~g~~~~~~~~~~l~~~  102 (147)
                      .+...++|..+|+.+.+.+.+.
T Consensus       392 ~~~~~~lG~~~G~ai~g~i~~~  413 (495)
T PRK14995        392 ETMAYELGAGLGIAIFGLLLSR  413 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999998887653

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=98.91  E-value=2.9e-08  Score=70.59  Aligned_cols=116  Identities=14%  Similarity=0.096  Sum_probs=77.7

Q ss_pred             hhhhhhhhcch---HHHHH-HHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHH
Q psy4740           5 GGLLAQKFGGK---HTLGF-GILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSF   80 (147)
Q Consensus         5 ~g~l~d~~gr~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~   80 (147)
                      .++++||.+||   +.... ...+.++........  .+....++...+.+++....++....+.+|.+|++.|+++.|+
T Consensus       243 ~~~~~d~~~r~~~r~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~  320 (368)
T TIGR00903       243 VAVIPDRVARAGLRSIYIRAAALLIAAFFLALAFE--LNRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGA  320 (368)
T ss_pred             HHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHc--cccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhhcCcccch
Confidence            46778887654   33222 333333333333333  3333344455556666666667788899999999999999999


Q ss_pred             HHhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHH
Q psy4740          81 VFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWC  126 (147)
Q Consensus        81 ~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (147)
                      .+...++++..+|.+.+.+..    +.+..|.+.+...++..+...
T Consensus       321 ~~~~g~~~~~~~~~~~~~~~~----~~~~~f~~~~~~~~i~~~~~~  362 (368)
T TIGR00903       321 IGFTSRAISVALALAAMLFIS----SAEAYFTFLAILITIAFAIAL  362 (368)
T ss_pred             hhHHHHHHHHHHHHHHHHHhc----CHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999998887762    566677777777666555543

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK11462 putative transporter; Provisional

Probab=98.90  E-value=4.8e-08  Score=71.43  Aligned_cols=131  Identities=17%  Similarity=0.122  Sum_probs=88.6

Q ss_pred             Ccchhhhhhh----hcchH-HHHHHHHHHHHHHHHhhhccc--cc--HHHHHHHHHHHhhccccCcccHHHHhhhhcC-C
Q psy4740           2 HIPGGLLAQK----FGGKH-TLGFGILSTAIFTLLTPFAAR--QS--ANWLIALRFFEGLGEGTTFPALNTLLAQWVP-P   71 (147)
Q Consensus         2 ~~~~g~l~d~----~gr~~-~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~   71 (147)
                      .|+.|.++||    +|||| .++++.+..++...++...+.  .+  ...+.+..++..++......+..++.+|..+ +
T Consensus        62 Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~  141 (460)
T PRK11462         62 DPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDP  141 (460)
T ss_pred             hhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCH
Confidence            3678999996    68764 455676777777666554421  11  3345555566777888888888999999876 6


Q ss_pred             cchhHHHHHHHhhhhhHHHHHHHHHHHHHhhcC-----CChhHHHHHHHHHHHHHHHHHHhhccCC
Q psy4740          72 TERGKIGSFVFAGNQIGTVFSSFLSGFLLKYTD-----GDWPEIFYLFGILGVLWFVAWCFLCYND  132 (147)
Q Consensus        72 ~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (147)
                      ++|.+..+......++|..+++.+...+.+..+     .+|+....+.+++.++.....+...+|.
T Consensus       142 ~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~i~~~i~~~~~kE~  207 (460)
T PRK11462        142 TQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFMMLAFCFFTTKER  207 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHhcceec
Confidence            899999999998888888888777655554321     3577766666666655544444444443

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=98.89  E-value=2.9e-08  Score=71.08  Aligned_cols=112  Identities=18%  Similarity=0.091  Sum_probs=78.5

Q ss_pred             cchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcc-hhHHHHHH
Q psy4740           3 IPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTE-RGKIGSFV   81 (147)
Q Consensus         3 ~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~-r~~~~~~~   81 (147)
                      +..+++.||+++|+.+..+... ++........  ++++...+..++.|++.+...+...+.+.|..|++. +|+..++.
T Consensus       259 ~~~~~l~~~~~~~~~~~~g~~~-~~~~~~~~~~--~~~~~~~~~~~~~G~~~g~~~~~~~~~~q~~~~~~~~~g~~~a~~  335 (393)
T PRK11195        259 GAAARLVTLETVLRVLPAGILM-GLVVLLMALQ--HSLLPAYPLLILIGALGGFFVVPMNALLQHRGHVLVGAGHSIAVQ  335 (393)
T ss_pred             HHHHHHhcCCcccchHHHHHHH-HHHHHHHHHH--hHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhCcccccchhHHHHH
Confidence            4567788888888877776433 3333333333  556666677778899888877778888888766654 79999999


Q ss_pred             HhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHH
Q psy4740          82 FAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVL  120 (147)
Q Consensus        82 ~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  120 (147)
                      +...+++..++..+.+.+...   +-+..+++.+...+.
T Consensus       336 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~  371 (393)
T PRK11195        336 NFNENLAMLLMLGLYSLLVKL---GVPVVAVIVGFGLLV  371 (393)
T ss_pred             hHHHHHHHHHHHHHHHHHHHc---CCCHHHHHHHHHHHH
Confidence            999999999999998866433   555555554433333

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=98.89  E-value=3.4e-09  Score=75.16  Aligned_cols=129  Identities=18%  Similarity=0.180  Sum_probs=93.7

Q ss_pred             CCcchhhhhhhh--cchHHHHH-HHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHH
Q psy4740           1 MHIPGGLLAQKF--GGKHTLGF-GILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKI   77 (147)
Q Consensus         1 ~~~~~g~l~d~~--gr~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~   77 (147)
                      |.+++||++||.  |||....+ .++...++.......+.+|+.+..++.++.|+..-+-.-.......|..|++.-|++
T Consensus       304 G~Ll~GwlSDklfkgrR~p~~~i~~~~i~~~~~~~w~~~~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA  383 (448)
T COG2271         304 GTLLAGWLSDKLFKGRRGPMALIFMLLITASLVLYWLAPNGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTA  383 (448)
T ss_pred             HHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhhccch
Confidence            357899999995  67755443 444444444444455445677888888888887665555666778999999999999


Q ss_pred             HHHHHhhhhh-HHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhccC
Q psy4740          78 GSFVFAGNQI-GTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYN  131 (147)
Q Consensus        78 ~~~~~~~~~~-g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (147)
                      .|....+.-+ |...+....+.+.+.  .||...|++..+.+++..+....+...
T Consensus       384 ~Gf~Glf~Yl~Ga~~a~~~~g~i~d~--~gW~g~Fi~~~~~a~l~~lll~~~~~~  436 (448)
T COG2271         384 TGFVGLFAYLIGAALAGLPLGYIADT--WGWDGGFIVLSIAALLAILLLLPVWNA  436 (448)
T ss_pred             hchhhhHHHHhhHHhcCCcceeeEec--CCCcchHHHHHHHHHHHHHHHHHHHhh
Confidence            9998887777 777777777777777  799999998877777766655555443

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=98.88  E-value=5.2e-08  Score=69.84  Aligned_cols=113  Identities=17%  Similarity=0.112  Sum_probs=81.3

Q ss_pred             cchhhhhhhhcchHHHHHHHHH-HHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHH
Q psy4740           3 IPGGLLAQKFGGKHTLGFGILS-TAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFV   81 (147)
Q Consensus         3 ~~~g~l~d~~gr~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~   81 (147)
                      ++.+++.||.+ |+.+..+..+ ......+....  ++.+.+....++.|++.+...+.....+.+..| +++++..+..
T Consensus       270 ~~~~~l~~r~~-~~~l~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  345 (394)
T PRK10213        270 SLSSFILKRSV-KLALAGAPLVLAVSALVLTLWG--SDKIVATGVAIIWGLTFALVPVGWSTWITRSLA-DQAEKAGSIQ  345 (394)
T ss_pred             HHHHHHHhccc-hhHHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHCc-ccHHHHHHHH
Confidence            46778888854 4444433333 33333433333  556667778888999888888888888888886 5567777888


Q ss_pred             HhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHH
Q psy4740          82 FAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLW  121 (147)
Q Consensus        82 ~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  121 (147)
                      ....++|..+|+.++|.+.+.  .|++..++..++..++.
T Consensus       346 ~~~~~lg~~~G~~l~G~l~~~--~g~~~~~~~~~~~~~~~  383 (394)
T PRK10213        346 VAVIQLANTCGAAIGGYALDN--IGLTSPLMLSGTLMLLT  383 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHhc--cChhhHHHHHHHHHHHH
Confidence            888899999999999999998  68888887776655443

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=98.88  E-value=3.8e-08  Score=72.26  Aligned_cols=122  Identities=18%  Similarity=0.226  Sum_probs=92.5

Q ss_pred             hhhhh-hcchHHH--HHHHHHHHHHHHHhhhc-------ccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhH
Q psy4740           7 LLAQK-FGGKHTL--GFGILSTAIFTLLTPFA-------ARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGK   76 (147)
Q Consensus         7 ~l~d~-~gr~~~~--~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~   76 (147)
                      ++.|| .+++...  .+|.++.+++.......       ...++++++...++.++++....|...+++.|..|++.||+
T Consensus       338 ~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~~g~  417 (475)
T TIGR00924       338 RLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRLMGQ  417 (475)
T ss_pred             HHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHH
Confidence            44444 3334433  66777777776665531       12578889999999999999999999999999999999999


Q ss_pred             HHHHHHhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhcc
Q psy4740          77 IGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCY  130 (147)
Q Consensus        77 ~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (147)
                      ++++......+|..+++.+.......  .+|...|...+...++..+..++..|
T Consensus       418 ~~g~~~l~~~~g~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  469 (475)
T TIGR00924       418 MLGMWFLAQAMGSLLGGYLATFGAVP--QGVTGVFGKIGLVTLLVGVVMALMVP  469 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcc--cchhhHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999998888876555  57887777777766665555544433

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>KOG2325|consensus

Probab=98.87  E-value=2.5e-08  Score=72.50  Aligned_cols=133  Identities=18%  Similarity=0.235  Sum_probs=99.0

Q ss_pred             CCcchhhhhhhhcc-hHHHHHHHHHHHHHHHHhhhc-c-cc-cHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhH
Q psy4740           1 MHIPGGLLAQKFGG-KHTLGFGILSTAIFTLLTPFA-A-RQ-SANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGK   76 (147)
Q Consensus         1 ~~~~~g~l~d~~gr-~~~~~~~~~~~~~~~~~~~~~-~-~~-~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~   76 (147)
                      +++..|+++.|.+. |+-++.+.++.++++++.... . ++ ..+.++++|++.|+|.+. ....-.++++....++|.+
T Consensus        87 ~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~n-~a~lR~Y~a~~s~~~dR~r  165 (488)
T KOG2325|consen   87 FSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVGN-FAVLRAYIADASTVEDRPR  165 (488)
T ss_pred             cchhhcccccccCCcccCHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCccc-HHHHHHHHHhccCccchHH
Confidence            35778899999885 777888999999999988333 2 12 568899999999998764 4456788888888889999


Q ss_pred             HHHHHHhhhhhHHHHHHHHHHHHHhhcC-----------CChhHHHHHHHHHHHHHHHHHHhhccCCCC
Q psy4740          77 IGSFVFAGNQIGTVFSSFLSGFLLKYTD-----------GDWPEIFYLFGILGVLWFVAWCFLCYNDPA  134 (147)
Q Consensus        77 ~~~~~~~~~~~g~~~~~~~~~~l~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (147)
                      +++....+..+|.++||.++..+..-..           .-+..+-|+.+...++.++...+..+|.++
T Consensus       166 A~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~  234 (488)
T KOG2325|consen  166 AFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYR  234 (488)
T ss_pred             HHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeeccc
Confidence            9999888888888888888766544211           124456677777777777777777776543

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=98.86  E-value=2.4e-07  Score=70.35  Aligned_cols=126  Identities=17%  Similarity=0.197  Sum_probs=97.9

Q ss_pred             cchhhhhhh-hcchHHHHHHHHHHHHHHHHhhhcccc------cHHHHHHHHHHHhhccccCcccHHHHhhhhcCCc---
Q psy4740           3 IPGGLLAQK-FGGKHTLGFGILSTAIFTLLTPFAARQ------SANWLIALRFFEGLGEGTTFPALNTLLAQWVPPT---   72 (147)
Q Consensus         3 ~~~g~l~d~-~gr~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~---   72 (147)
                      .++|+++|+ +|+++.+.++.++..++..+......+      .....+++-.+..+|.|+.-+...+...|.++++   
T Consensus        41 ilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~  120 (654)
T TIGR00926        41 LIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQLS  120 (654)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHHHHHhhccccccCchhhhHhhcCccchh
Confidence            568999996 699999999999999988877654211      1233556777888899999999999999998754   


Q ss_pred             chhHHHHHHHhhhhhHHHHHHHHHHHHHhhc-----CCChhHHHHHHHHHHHHHHHHHHhh
Q psy4740          73 ERGKIGSFVFAGNQIGTVFSSFLSGFLLKYT-----DGDWPEIFYLFGILGVLWFVAWCFL  128 (147)
Q Consensus        73 ~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~  128 (147)
                      +|...+.+++...++|+.+++.+...+.+..     ..+|...|.+.++..++..+.....
T Consensus       121 ~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lvf~~g  181 (654)
T TIGR00926       121 LRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMILALIVFMAG  181 (654)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHHHHHh
Confidence            3677888899999999999999988886441     1369999999888888766555443

>TIGR01272 gluP glucose/galactose transporter

Probab=98.86  E-value=3.6e-08  Score=68.58  Aligned_cols=87  Identities=14%  Similarity=0.075  Sum_probs=74.2

Q ss_pred             ccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHHHhhhhhHHHHHHHHHHHHHhhc--------------
Q psy4740          38 QSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLKYT--------------  103 (147)
Q Consensus        38 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~--------------  103 (147)
                      .++..+++.-++.|.|.+...+..+.++++..|+|++.+.+++.+..+++|..++|.+++.+....              
T Consensus         8 ~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~~~~   87 (310)
T TIGR01272         8 RYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATANAE   87 (310)
T ss_pred             hHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhhhHH
Confidence            678899999999999999999999999999999999999999999999999999999999877431              


Q ss_pred             CCChhHHHHHHHHHHHHHHHH
Q psy4740         104 DGDWPEIFYLFGILGVLWFVA  124 (147)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~  124 (147)
                      ...|+++|++.+.+..+..+.
T Consensus        88 ~~~~~~~yl~ia~~~~~~~i~  108 (310)
T TIGR01272        88 AAKVHTPYLLLAGALAVLAII  108 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            036899988666665544443

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>KOG2563|consensus

Probab=98.85  E-value=3e-08  Score=70.94  Aligned_cols=136  Identities=18%  Similarity=0.270  Sum_probs=101.9

Q ss_pred             cchhhhhhhhcchHHHHHHHHHHHHHHHHhhhccc----ccHH--HHHHHHHHHhhccccCcccHHHHhhhhcCCcchhH
Q psy4740           3 IPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAAR----QSAN--WLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGK   76 (147)
Q Consensus         3 ~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~----~~~~--~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~   76 (147)
                      +.+.|+.||+|-|..++++....++++.+-..+..    +.++  ....++.+.+.++-...........-||++++|..
T Consensus        97 f~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~  176 (480)
T KOG2563|consen   97 FAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAI  176 (480)
T ss_pred             hHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhh
Confidence            46789999999999999999999999988766532    2344  66788899999888777766777888999999999


Q ss_pred             HHHHHHhhhhhHHHHHHHHHHHHHhhc----CCChhH--HHHHHHHHHHHHHHHHHhhccCCCCCCCC
Q psy4740          77 IGSFVFAGNQIGTVFSSFLSGFLLKYT----DGDWPE--IFYLFGILGVLWFVAWCFLCYNDPASHPY  138 (147)
Q Consensus        77 ~~~~~~~~~~~g~~~~~~~~~~l~~~~----~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (147)
                      +..+..+...+|..++.++...+..+.    +..|..  .|+....+.++.+....+..+++|+.++.
T Consensus       177 A~~~~v~~n~LGvavg~llppilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~P~tPps  244 (480)
T KOG2563|consen  177 ATVLGVMGNPLGVAVGFLLPPILVPSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVFTKKPPTPPS  244 (480)
T ss_pred             hhhHHHhcchHHHHHHhhccceecCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCc
Confidence            999999999999999888888777654    234543  45545555554445555555565555443

>TIGR00788 fbt folate/biopterin transporter

Probab=98.85  E-value=2.4e-08  Score=73.14  Aligned_cols=129  Identities=14%  Similarity=0.101  Sum_probs=92.1

Q ss_pred             cchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcc--------cccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcch
Q psy4740           3 IPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAA--------RQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTER   74 (147)
Q Consensus         3 ~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r   74 (147)
                      ...+++.+|++.|+++.++.++.+++........        .++.+......++.+++.+..+.....++++..|++.+
T Consensus       306 ~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~e  385 (468)
T TIGR00788       306 GGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGCE  385 (468)
T ss_pred             HHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHHHHHHHHHHHccHHHHHHHhCCCCce
Confidence            4566777899999999999988888775543210        02223444556777888888888899999999999999


Q ss_pred             hHHHHHHHhhhhhHHHHHHHHHHHHHhhcC-----CChhHHHHHHHHHHHHHHHHHHhhccC
Q psy4740          75 GKIGSFVFAGNQIGTVFSSFLSGFLLKYTD-----GDWPEIFYLFGILGVLWFVAWCFLCYN  131 (147)
Q Consensus        75 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (147)
                      ++..++..+..++|..+++.+++.+.++.+     .+..+...+......+..+....+.|+
T Consensus       386 gt~~al~~s~~~lg~~v~~~~gg~l~~~~g~~~~~~~~~~~~i~i~~~~~l~~l~~~~llP~  447 (468)
T TIGR00788       386 SSVFALLASILHLGSSVSGFLGVLLMETIGITCDNSNNLWLLILGHSLAPLLPLPLLHLLPR  447 (468)
T ss_pred             ehHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHHHHHHhCCC
Confidence            999999999999999999999999988743     233333333333333333444447775

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=98.81  E-value=1.2e-07  Score=64.25  Aligned_cols=118  Identities=32%  Similarity=0.580  Sum_probs=89.8

Q ss_pred             cchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCC-cchhHHHHHH
Q psy4740           3 IPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPP-TERGKIGSFV   81 (147)
Q Consensus         3 ~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-~~r~~~~~~~   81 (147)
                      ++.|.++||+|||+.+..+......+..........+...+++.|...|++.+...+....++.|..|+ ++|+...+..
T Consensus        57 ~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (338)
T COG0477          57 LLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGLALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLV  136 (338)
T ss_pred             hhhhhccccccchHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHH
Confidence            578999999999988887776555555555555112478888999989999998899999999999988 7888888887


Q ss_pred             Hh-hhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHH
Q psy4740          82 FA-GNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVL  120 (147)
Q Consensus        82 ~~-~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  120 (147)
                      .. ...++..+++.+++.+......+|+..|.........
T Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (338)
T COG0477         137 TLGAGALGLALGPLLAGLLLGALLWGWRAAFLLAALLGLL  176 (338)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence            77 5778888888777666544235788876666655543

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=98.80  E-value=3e-08  Score=69.78  Aligned_cols=108  Identities=15%  Similarity=0.137  Sum_probs=71.8

Q ss_pred             Ccchhhhhhhhc-chHHHH-HHH-HHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHH
Q psy4740           2 HIPGGLLAQKFG-GKHTLG-FGI-LSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIG   78 (147)
Q Consensus         2 ~~~~g~l~d~~g-r~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~   78 (147)
                      +++.|++.||.. +|+... ... ....+...........+.....+..++.|.......+....+..|.+|+++|+++.
T Consensus       269 ~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~  348 (379)
T TIGR00881       269 TLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWLNPAANPLMDLICLFALGFLVYGPQMLIGVIASELAPKKAAGTAA  348 (379)
T ss_pred             HHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcchhHHHH
Confidence            457889999864 333222 211 11122222222211134445555666677655555555677889999999999999


Q ss_pred             HHHHhhhhhHHHHHHHHHHHHHhhcCCChhHHH
Q psy4740          79 SFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIF  111 (147)
Q Consensus        79 ~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~  111 (147)
                      ++.+...++|..++|.+.+.+.+.  .||++.|
T Consensus       349 g~~~~~~~~g~~~~~~~~g~l~~~--~g~~~~f  379 (379)
T TIGR00881       349 GFVGFFAYLGGILAGLPLGYLADG--FGWAGAF  379 (379)
T ss_pred             HHHHHhhhhhhhhhhhhHHHHHHh--hcccccC
Confidence            999999999999999999999998  6787643

>TIGR01272 gluP glucose/galactose transporter

Probab=98.79  E-value=5.6e-08  Score=67.63  Aligned_cols=109  Identities=13%  Similarity=0.118  Sum_probs=80.6

Q ss_pred             CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHH
Q psy4740           2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFV   81 (147)
Q Consensus         2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~   81 (147)
                      .+..+++.||+|+|+.+.++..+.++...+....  ++.. ....-++.|++.+..+|...+...+..|++ .+++.++.
T Consensus       195 r~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~--~~~~-~~~~~~l~g~~~s~i~P~~~s~a~~~~~~~-~~~asai~  270 (310)
T TIGR01272       195 RFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALT--HGYV-AMWFVLALGLFNSIMFPTIFSLALNALGRH-TSQGSGIL  270 (310)
T ss_pred             HHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHc--CCHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-hhhhHHHH
Confidence            4567899999999999888877777766555444  3322 233555789999999999999998887754 44555664


Q ss_pred             HhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHH
Q psy4740          82 FAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGIL  117 (147)
Q Consensus        82 ~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  117 (147)
                       ....+|..+.|.+.|.+.+.  .+.+..|++..+.
T Consensus       271 -~~~~~Gg~i~P~l~G~lad~--~g~~~a~~v~~~~  303 (310)
T TIGR01272       271 -CLAIVGGAIVPLLQGSLADC--LGIQLAFALPVPC  303 (310)
T ss_pred             -HHHHhcchHHHHHHHHHHHh--ccchHHHHHHHHH
Confidence             56678999999999999987  5778777754433

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PRK10429 melibiose:sodium symporter; Provisional

Probab=98.79  E-value=2.7e-08  Score=72.90  Aligned_cols=101  Identities=14%  Similarity=0.059  Sum_probs=77.5

Q ss_pred             CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhh---cccccHHHHHHHHHHHhhccccCcccHHHHhhhhcC-------C
Q psy4740           2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPF---AARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVP-------P   71 (147)
Q Consensus         2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-------~   71 (147)
                      .+++++++||+|+|+.+.++..+.+++......   ....+.+.+++..++.|++.+...+...++++|..+       .
T Consensus       283 ~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~  362 (473)
T PRK10429        283 LILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGI  362 (473)
T ss_pred             HHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCc
Confidence            357899999999999998887776655554432   222455666677788888888888888889999865       3


Q ss_pred             cchhHHHHHHHhhhhhHHHHHHHHHHHHHhh
Q psy4740          72 TERGKIGSFVFAGNQIGTVFSSFLSGFLLKY  102 (147)
Q Consensus        72 ~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~  102 (147)
                      ++.|..++.......++..+++.+.+.+.+.
T Consensus       363 R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~  393 (473)
T PRK10429        363 RCESIAYSVQTMVVKGGSAFAAFFIGVVLGL  393 (473)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455678888889999999999999988765

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=98.79  E-value=4e-11  Score=86.88  Aligned_cols=133  Identities=19%  Similarity=0.152  Sum_probs=89.7

Q ss_pred             cchhhhhhhhcchHHHHHHHHHHHHHHHHhh--hc-cccc----HHHHHHHHHHHhhccc-cCcccHHHHhhhhcCCcch
Q psy4740           3 IPGGLLAQKFGGKHTLGFGILSTAIFTLLTP--FA-ARQS----ANWLIALRFFEGLGEG-TTFPALNTLLAQWVPPTER   74 (147)
Q Consensus         3 ~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~--~~-~~~~----~~~~~~~~~l~g~~~~-~~~~~~~~~~~~~~~~~~r   74 (147)
                      +....+.||+|||+.++.+....++....++  .. ..++    ....++.-.+.....+ +..+....+.+|.+|++.|
T Consensus       304 ~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R  383 (451)
T PF00083_consen  304 LLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVR  383 (451)
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccceeeeecccccccccccccccccccccccccc
Confidence            4556889999999999998888877777664  11 1111    1112222222222222 3345566888999999999


Q ss_pred             hHHHHHHHhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhccCCCCCCC
Q psy4740          75 GKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPASHP  137 (147)
Q Consensus        75 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (147)
                      .++.++......++..+++.+...+.+.  .+-...+.+.+.+.++..+..+++.||++.++.
T Consensus       384 ~~~~~~~~~~~~i~~~i~~~~~~~~~~~--~~~~~~~~i~~~~~~i~~i~~~~~lpET~g~~l  444 (451)
T PF00083_consen  384 STGIGLSYAVGRIGGFIIPFLFPYLFNN--LGGWGVFLIFAGVCLIAIIFVYFFLPETKGKTL  444 (451)
T ss_pred             cccccccccccccccccccccccccccc--ccccccchhhHHHHHHHHhheeEEEeeCCCCCH
Confidence            9999999998889998888887777665  332345566666666666777788888876543

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>KOG2504|consensus

Probab=98.78  E-value=9.1e-09  Score=75.87  Aligned_cols=126  Identities=23%  Similarity=0.276  Sum_probs=105.5

Q ss_pred             CCcchhhhhhhhc--chHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHH
Q psy4740           1 MHIPGGLLAQKFG--GKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIG   78 (147)
Q Consensus         1 ~~~~~g~l~d~~g--r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~   78 (147)
                      +.+..|+++|+..  ++.+..++.+...+....+++.  +++..++..-++.|+..|.........+.|..+.++-..+.
T Consensus       349 gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~--~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~  426 (509)
T KOG2504|consen  349 GRIILGLLADKPGIRALVLFLLTLLIAGLARLFLPFA--TTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAY  426 (509)
T ss_pred             hhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHH
Confidence            3578899999988  4445556677777777777777  88988999999999999998888888999999999999999


Q ss_pred             HHHHhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhc
Q psy4740          79 SFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLC  129 (147)
Q Consensus        79 ~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (147)
                      |+......++..++|.+.+.+.+.++ +|...|+..++..++....+....
T Consensus       427 Gl~l~~~gi~~l~gpPiag~~~d~tg-~Y~~~f~~~g~~~~~s~~~~~~~~  476 (509)
T KOG2504|consen  427 GLLLLFQGIGALVGPPIAGLLYDITG-NYDHAFYFCGLCFLLSAVLLLILR  476 (509)
T ss_pred             HHHHHHhHHHHHcCcccceeeeeccC-CeeeehhhcChHHHHHHHHHHHhH
Confidence            99999999999999999999888854 599999999888887665554443

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=98.78  E-value=6.4e-08  Score=70.65  Aligned_cols=89  Identities=15%  Similarity=0.202  Sum_probs=60.6

Q ss_pred             cHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHHHhhhhhHHHHHHHHHHHHHhhcC-CChhHHHHHHHHH
Q psy4740          39 SANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLKYTD-GDWPEIFYLFGIL  117 (147)
Q Consensus        39 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~  117 (147)
                      +....++...+.+.+.+...+.......|..| +.+|...++.+....+++.++|.+.+.+.+.+. .+|+..|.+.+..
T Consensus       360 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~  438 (465)
T TIGR00894       360 AFYLTIIILTLANAVSSGPLAGVLINSLDLAP-RFLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFV  438 (465)
T ss_pred             chHHHHHHHHHHHHHhhhhhhhhhhchhhcCh-hHHHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHH
Confidence            33334444444455444444544455556665 489999999999999999999999998876532 2488889888877


Q ss_pred             HHHHHHHHHhh
Q psy4740         118 GVLWFVAWCFL  128 (147)
Q Consensus       118 ~~~~~~~~~~~  128 (147)
                      .++..+.....
T Consensus       439 ~~i~~i~~~~~  449 (465)
T TIGR00894       439 NILCVIFYLIF  449 (465)
T ss_pred             HHHHHHHeeee
Confidence            77765554443

>PF13347 MFS_2: MFS/sugar transport protein

Probab=98.78  E-value=1.2e-07  Score=68.71  Aligned_cols=101  Identities=26%  Similarity=0.263  Sum_probs=88.0

Q ss_pred             CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCC-------cch
Q psy4740           2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPP-------TER   74 (147)
Q Consensus         2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-------~~r   74 (147)
                      .+++++++||+|+|+.+..+..+.+++..+..+...++.+.+++..++.|++.+.......+.++|..+.       ++.
T Consensus       277 ~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~  356 (428)
T PF13347_consen  277 SPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGPGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRRE  356 (428)
T ss_pred             HHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCch
Confidence            3678999999999999999999999999888777435888899999999999999999999999998863       446


Q ss_pred             hHHHHHHHhhhhhHHHHHHHHHHHHHhh
Q psy4740          75 GKIGSFVFAGNQIGTVFSSFLSGFLLKY  102 (147)
Q Consensus        75 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~  102 (147)
                      |...+.......++..+++.+.+.+.+.
T Consensus       357 g~~~s~~~~~~k~~~~la~~i~g~~l~~  384 (428)
T PF13347_consen  357 GMYFSVNSFFIKIGQGLAGAIVGLLLAL  384 (428)
T ss_pred             HHHHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence            8888889999999999999998887765

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=98.76  E-value=5.9e-08  Score=71.67  Aligned_cols=121  Identities=20%  Similarity=0.244  Sum_probs=84.7

Q ss_pred             hhhhhhhcchHHHHHHHHHHHHHHHHhhhccc-------ccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHH
Q psy4740           6 GLLAQKFGGKHTLGFGILSTAIFTLLTPFAAR-------QSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIG   78 (147)
Q Consensus         6 g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~   78 (147)
                      +++.||+++.+.+.++.++.+++.........       -+.++++...++.|+++....|...+++.+..|++.||+.+
T Consensus       341 ~~l~~r~~~~~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~rg~~~  420 (500)
T PRK09584        341 NKMGDRLPMPHKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRLMGFIM  420 (500)
T ss_pred             HHhCcCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHHHHHHH
Confidence            55566666667788888888888877655411       12557888999999999999999999999999999999999


Q ss_pred             HHHHhhhhhHHHHHHHHHHHHHhhc--------CCChhHHHHHHHHHHHHHHHHHH
Q psy4740          79 SFVFAGNQIGTVFSSFLSGFLLKYT--------DGDWPEIFYLFGILGVLWFVAWC  126 (147)
Q Consensus        79 ~~~~~~~~~g~~~~~~~~~~l~~~~--------~~~~~~~~~~~~~~~~~~~~~~~  126 (147)
                      |.+.....+|..++..+.+......        ..++.+.|...++..++..+..+
T Consensus       421 g~~~l~~a~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~~~~  476 (500)
T PRK09584        421 GSWFLTTAGAALIAGYVANLMAVPDNVTDPLMSLEVYGRVFLQIGIATAVIAVLML  476 (500)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            9887766666666555554221100        01356777766666554333333

>PRK11043 putative transporter; Provisional

Probab=98.75  E-value=2.1e-07  Score=66.66  Aligned_cols=99  Identities=16%  Similarity=0.124  Sum_probs=69.2

Q ss_pred             cchhhhhhhhcchHHHHHHHHHHHHHHHHhh---hcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHH
Q psy4740           3 IPGGLLAQKFGGKHTLGFGILSTAIFTLLTP---FAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGS   79 (147)
Q Consensus         3 ~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~   79 (147)
                      +..+++.||+++|+.+........+......   ....++....++...+.|.+.+..++.......|..| ++|+++.+
T Consensus       256 ~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g  334 (401)
T PRK11043        256 YGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLLSHPSLVPLLIPFCVMAAANGAIYPIVVAQALRPFP-QATGKAAA  334 (401)
T ss_pred             HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCc-ccChHHHH
Confidence            3467888999999876555444444333221   1112345555566677788888888887777777765 68999999


Q ss_pred             HHHhhhhhHHHHHHHHHHHHHhh
Q psy4740          80 FVFAGNQIGTVFSSFLSGFLLKY  102 (147)
Q Consensus        80 ~~~~~~~~g~~~~~~~~~~l~~~  102 (147)
                      +.+.....+...++.+.+.+.+.
T Consensus       335 ~~~~~~~~~~~~~~~~~g~l~~~  357 (401)
T PRK11043        335 LQNTLQLGLCFLASLLVSALIST  357 (401)
T ss_pred             HHHHHHHHHHHHHHHHHHHccCC
Confidence            99998888888888888888664

>TIGR00896 CynX cyanate transporter

Probab=98.75  E-value=4.4e-08  Score=69.02  Aligned_cols=99  Identities=15%  Similarity=0.160  Sum_probs=73.2

Q ss_pred             Ccchhhhhhhh-cchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcC-CcchhHHHH
Q psy4740           2 HIPGGLLAQKF-GGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVP-PTERGKIGS   79 (147)
Q Consensus         2 ~~~~g~l~d~~-gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~r~~~~~   79 (147)
                      ++..|++.||+ +||+.+..+.++.+++...+...  .+.... ...++.|++.+...+.....+.+..+ +++++...+
T Consensus       249 ~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~  325 (355)
T TIGR00896       249 ALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFA--PMHGLW-AWALVLGLGQGGAFPLALTLIGLRSRQAAQAAALSA  325 (355)
T ss_pred             HHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHh--hhhHHH-HHHHHHHHhhhhHhHHHHHHHHHhccCHHHHHHHHH
Confidence            46789999999 56667777777777766655554  222222 23467899988888877777765554 567788899


Q ss_pred             HHHhhhhhHHHHHHHHHHHHHhhc
Q psy4740          80 FVFAGNQIGTVFSSFLSGFLLKYT  103 (147)
Q Consensus        80 ~~~~~~~~g~~~~~~~~~~l~~~~  103 (147)
                      +.+....++..++|.+.+.+.++.
T Consensus       326 ~~~~~~~~~~~~gp~~~G~l~~~~  349 (355)
T TIGR00896       326 MAQSIGYLLAALGPLFVGVLHDIS  349 (355)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh
Confidence            988888899999999999999874

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>KOG4686|consensus

Probab=98.75  E-value=8.1e-08  Score=65.59  Aligned_cols=112  Identities=21%  Similarity=0.122  Sum_probs=78.1

Q ss_pred             CcchhhhhhhhcchHHHHHHHH-HHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHH
Q psy4740           2 HIPGGLLAQKFGGKHTLGFGIL-STAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSF   80 (147)
Q Consensus         2 ~~~~g~l~d~~gr~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~   80 (147)
                      +++.|.++||+|++.......+ ...++-....+    +.+.-++...+.|...+.........++...|+++-|++.+.
T Consensus       317 spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~F----t~lsPy~~m~~lGLsysllAcslWP~va~~vpE~qLGTaygf  392 (459)
T KOG4686|consen  317 SPVFGAISDKYGFNLWWVASACILTLLGHSGLFF----TFLSPYTSMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGF  392 (459)
T ss_pred             hhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHh----hhccHHHHHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHH
Confidence            5788999999999976655433 33333333222    233345566677776665555566677778888999999999


Q ss_pred             HHhhhhhHHHHHHHHHHHHHhhcC-CChhHHHHHHHHH
Q psy4740          81 VFAGNQIGTVFSSFLSGFLLKYTD-GDWPEIFYLFGIL  117 (147)
Q Consensus        81 ~~~~~~~g~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~  117 (147)
                      .++..++|-.+.|.+.+.+.+.++ ..|--.|.+....
T Consensus       393 ~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~  430 (459)
T KOG4686|consen  393 IQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGL  430 (459)
T ss_pred             HHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHHH
Confidence            999999999999999999998854 2344445443333

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=98.72  E-value=3.5e-08  Score=68.92  Aligned_cols=91  Identities=29%  Similarity=0.465  Sum_probs=75.8

Q ss_pred             cchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcc-cccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHH
Q psy4740           3 IPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAA-RQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFV   81 (147)
Q Consensus         3 ~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~   81 (147)
                      ++.|++.||+++|+..........+......... .++....+...++.|++.+...+....++.|..|+++|++..++.
T Consensus       261 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~  340 (352)
T PF07690_consen  261 LLAGRLSDRFGRRRRLLIAILLLILGALGLLLLPFSSSPVWLIIALFLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLF  340 (352)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHH
T ss_pred             HHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            5689999999998888777777666666655442 235567777888899999999999999999999999999999999


Q ss_pred             HhhhhhHHHHHH
Q psy4740          82 FAGNQIGTVFSS   93 (147)
Q Consensus        82 ~~~~~~g~~~~~   93 (147)
                      +...+++..++|
T Consensus       341 ~~~~~~~~~igP  352 (352)
T PF07690_consen  341 NSIGSLGGIIGP  352 (352)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCC
Confidence            999999999887

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>TIGR00901 2A0125 AmpG-related permease

Probab=98.71  E-value=3.2e-08  Score=69.72  Aligned_cols=85  Identities=13%  Similarity=0.029  Sum_probs=66.9

Q ss_pred             CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhc--cc-------ccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCc
Q psy4740           2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFA--AR-------QSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPT   72 (147)
Q Consensus         2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~--~~-------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~   72 (147)
                      .+++|++.||+|||+.+..+.++.++........  ..       ++.+.+....++.+++.+...+...+++.|.+|++
T Consensus       262 ~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~  341 (356)
T TIGR00901       262 GLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASNGHHDGITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPK  341 (356)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCC
Confidence            3567899999999999888887777666544332  11       23455667778889999999999999999999999


Q ss_pred             chhHHHHHHHhhhh
Q psy4740          73 ERGKIGSFVFAGNQ   86 (147)
Q Consensus        73 ~r~~~~~~~~~~~~   86 (147)
                      +||+.+++.++..+
T Consensus       342 ~~g~~~g~~~~~~~  355 (356)
T TIGR00901       342 FGATQMALLSSLSA  355 (356)
T ss_pred             ccHHHHHHHHHHHh
Confidence            99999999877554

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=98.71  E-value=7.1e-07  Score=65.58  Aligned_cols=132  Identities=16%  Similarity=0.154  Sum_probs=95.2

Q ss_pred             cchhhhhhhhcchHHHHH-HHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcch-------
Q psy4740           3 IPGGLLAQKFGGKHTLGF-GILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTER-------   74 (147)
Q Consensus         3 ~~~g~l~d~~gr~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r-------   74 (147)
                      |+.|-++|+-++||.++. ...+..+.+..+.+..+++++...+..++.-++.+......++++.|..+++.+       
T Consensus        88 P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyna~LP~la~~~~~~~~~~~~  167 (477)
T PF11700_consen   88 PFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYNAYLPDLARPEPRVRAAREP  167 (477)
T ss_pred             HHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChhhhhhhhh
Confidence            678999999886666554 455555566666665445665556666666677777888889999999999888       


Q ss_pred             -------------------hHHHHHHHhhhhhHHHHHHHHHHHHHhhcC------CChhHHHHHHHHHHHHHHHHHHhhc
Q psy4740          75 -------------------GKIGSFVFAGNQIGTVFSSFLSGFLLKYTD------GDWPEIFYLFGILGVLWFVAWCFLC  129 (147)
Q Consensus        75 -------------------~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~  129 (147)
                                         ++..+.......+|+++.-.+.-.+....+      .+.|..+.+.++--++..+..++..
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~~~~~a~ww~vfsiP~~~~~  247 (477)
T PF11700_consen  168 SANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRVAFLIVALWWLVFSIPLFLWL  247 (477)
T ss_pred             hccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHHHHHHHHHHHHHHHHHHHhC
Confidence                               888888888888888887766655443321      2357788888877777777777777


Q ss_pred             cCCCC
Q psy4740         130 YNDPA  134 (147)
Q Consensus       130 ~~~~~  134 (147)
                      |+.|+
T Consensus       248 ~~~~~  252 (477)
T PF11700_consen  248 PDRPG  252 (477)
T ss_pred             CCCCC
Confidence            77655

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=98.70  E-value=2.3e-07  Score=65.78  Aligned_cols=94  Identities=19%  Similarity=0.270  Sum_probs=66.4

Q ss_pred             CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcc--c-ccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHH
Q psy4740           2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAA--R-QSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIG   78 (147)
Q Consensus         2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~   78 (147)
                      +++.|++.||+|+|+.+..+..+..++...+....  . .+....+...++.|++.+...+.......|..| ++|+++.
T Consensus       259 ~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~g~~~  337 (385)
T TIGR00710       259 GFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAILGLGSWAMIIGPMMFVGIGNSMISSIAMAYALEDFP-HVAGTAS  337 (385)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-ccchHHH
Confidence            45788999999999998888777666665554331  1 223344556677888888888888888888876 6899999


Q ss_pred             HHHHhhhhh-HHHHHHHHH
Q psy4740          79 SFVFAGNQI-GTVFSSFLS   96 (147)
Q Consensus        79 ~~~~~~~~~-g~~~~~~~~   96 (147)
                      ++.+..... |...++.++
T Consensus       338 ~~~~~~~~~~g~i~~~~~~  356 (385)
T TIGR00710       338 ALFGTLRLVLGAIVGYLVS  356 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            998776654 445555444

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=98.70  E-value=7.9e-08  Score=77.11  Aligned_cols=118  Identities=16%  Similarity=0.151  Sum_probs=86.2

Q ss_pred             CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhc------------------ccccHHHHHHHHHHHhhccccCcccHHH
Q psy4740           2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFA------------------ARQSANWLIALRFFEGLGEGTTFPALNT   63 (147)
Q Consensus         2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~l~g~~~~~~~~~~~~   63 (147)
                      ++..|+++|+.++++.+..+.++.++..+.....                  ...+.+.+++..++.|++.+...+...+
T Consensus       278 ~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  357 (1140)
T PRK06814        278 SFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKRHGWRILIDLFGLAAAGGLYIVPLFA  357 (1140)
T ss_pred             HHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccchhhhhcccccHHHHHHHHHHHHHHHHhHHHHHH
Confidence            4567888888777666655555554444333221                  1134566677788889999988888999


Q ss_pred             HhhhhcCCcchhHHHHHHHhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHH
Q psy4740          64 LLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVL  120 (147)
Q Consensus        64 ~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  120 (147)
                      ++.+.+|++.||+++|..+....++..+++.+.+.+.+.. .++...+++.+...++
T Consensus       358 ~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~~-~~~~~~~~~~~~~~~~  413 (1140)
T PRK06814        358 ALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQALG-FSIPWIILFIALANLI  413 (1140)
T ss_pred             HHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHhc-cCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999998887542 3666666655554333

>PRK10133 L-fucose transporter; Provisional

Probab=98.69  E-value=2.1e-07  Score=67.72  Aligned_cols=115  Identities=16%  Similarity=0.166  Sum_probs=83.5

Q ss_pred             CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHH
Q psy4740           2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFV   81 (147)
Q Consensus         2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~   81 (147)
                      +++.+++.||+|+|+++..+..+.++...+....  .+. ..+..-.+.|++.+..+|...+...|..|+ +.+.+.++.
T Consensus       312 ~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~--~~~-~~~~~~~l~glg~~~i~P~~~s~a~~~~~~-~~~~as~l~  387 (438)
T PRK10133        312 RFTGTWLISRFAPHKVLAAYALIAMALCLISAFA--GGH-VGLIALTLCSAFMSIQYPTIFSLGIKNLGQ-DTKYGSSFI  387 (438)
T ss_pred             HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHc--CCh-HHHHHHHHHHHHHHHHHHHHHHHHHcccch-hhccchhHH
Confidence            4578999999999999888877766665555444  332 234556778999999999999999998765 356666666


Q ss_pred             HhhhhhHHHHHHHHHHHHHhhcCCC-hhHHHHHHHHHHHHHHH
Q psy4740          82 FAGNQIGTVFSSFLSGFLLKYTDGD-WPEIFYLFGILGVLWFV  123 (147)
Q Consensus        82 ~~~~~~g~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~  123 (147)
                      .. ..+|..++|.+.+.+.+.  .| -+..|++..+..+....
T Consensus       388 ~~-~~~g~~~~~~i~G~l~~~--~g~~~~~~~v~~~~~~~~~~  427 (438)
T PRK10133        388 VM-TIIGGGIVTPVMGFVSDA--AGNIPTAELIPALCFAVIFI  427 (438)
T ss_pred             hH-HhccchHHHHHHHHHHHh--ccchHHHHHHHHHHHHHHHH
Confidence            54 446788888888988877  55 67888766555544333

>KOG0252|consensus

Probab=98.68  E-value=2.4e-08  Score=71.73  Aligned_cols=133  Identities=13%  Similarity=0.063  Sum_probs=93.2

Q ss_pred             cchhhhhhhhcchHHHHHHHHHHHHHHHHhhhccc--ccHHHHHHHHHHHhh-ccccCcccHHHHhhhhcCCcchhHHHH
Q psy4740           3 IPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAAR--QSANWLIALRFFEGL-GEGTTFPALNTLLAQWVPPTERGKIGS   79 (147)
Q Consensus         3 ~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~g~-~~~~~~~~~~~~~~~~~~~~~r~~~~~   79 (147)
                      ++...+.|+.|||+..+.+.++..+..+..+....  .+-..+.+...+..+ +.-+-......+-+|.+|.+.|+++.+
T Consensus       366 w~tv~~id~iGRk~iq~~GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hG  445 (538)
T KOG0252|consen  366 WFTVYFIDIIGRKYIQLMGFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHG  445 (538)
T ss_pred             eEEEEEeehhhhHHHHHhhHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCCCceeEEeehhhchHHHhhhhhh
Confidence            35567899999999999999999988888766521  111112222222211 122222344556799999999999999


Q ss_pred             HHHhhhhhHHHHHHHHHHHHHhhc---CCChhHHHHHHHHHHHHHHHHHHhhccCCCCCC
Q psy4740          80 FVFAGNQIGTVFSSFLSGFLLKYT---DGDWPEIFYLFGILGVLWFVAWCFLCYNDPASH  136 (147)
Q Consensus        80 ~~~~~~~~g~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (147)
                      +.....-.|++++......+.++.   ..+.+..+++.+.+..+..+..+ +.||++.+.
T Consensus       446 IsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~-l~pEtk~~~  504 (538)
T KOG0252|consen  446 ISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFTL-LIPETKGKS  504 (538)
T ss_pred             HHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHheeE-EeecccccC
Confidence            999999999999999888888721   26789999999998887655554 455665443

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=98.65  E-value=1.6e-07  Score=69.24  Aligned_cols=125  Identities=17%  Similarity=0.189  Sum_probs=88.9

Q ss_pred             cchhhhhhhhcchHH-------HHHHHHHHHHHHHHhh-----hcc---cccHHHHHHHHHHHhhccccCcccHHHHhhh
Q psy4740           3 IPGGLLAQKFGGKHT-------LGFGILSTAIFTLLTP-----FAA---RQSANWLIALRFFEGLGEGTTFPALNTLLAQ   67 (147)
Q Consensus         3 ~~~g~l~d~~gr~~~-------~~~~~~~~~~~~~~~~-----~~~---~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~   67 (147)
                      ++.+++.||.++|+.       +.+|.++.+++.+...     ...   ..+.++++...++.|++++...+.....+.+
T Consensus       327 pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~  406 (489)
T PRK10207        327 PILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQSLGELFISALGLAMIAA  406 (489)
T ss_pred             HHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            567899999998863       5666666665543221     111   1356777778899999999999999999999


Q ss_pred             hcCCcchhHHHHHHHhhhhhHHHHHHHHHHHHHhhc--------CCChhHHHHHHHHHHHHHHHHHHh
Q psy4740          68 WVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLKYT--------DGDWPEIFYLFGILGVLWFVAWCF  127 (147)
Q Consensus        68 ~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~  127 (147)
                      ..|++.++.+++++....++|..++..++.......        ...+.+.|...+...++..+..+.
T Consensus       407 ~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~v~~~~  474 (489)
T PRK10207        407 LVPQHLMGFILGMWFLTQAAAFLLGGYVATFTAVPDNITDPLETLPVYTNVFGKIGLVTLGVAVVMAL  474 (489)
T ss_pred             hChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999888776553210        012456666666555544444443

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=98.64  E-value=3.8e-07  Score=66.30  Aligned_cols=128  Identities=27%  Similarity=0.349  Sum_probs=95.1

Q ss_pred             Ccchhhhhhhhc-----chHHHHHHHHHHHHHHHHhhhccc--ccHHHHHHHHHHHhhccccCcccHHHHhhhhc--CCc
Q psy4740           2 HIPGGLLAQKFG-----GKHTLGFGILSTAIFTLLTPFAAR--QSANWLIALRFFEGLGEGTTFPALNTLLAQWV--PPT   72 (147)
Q Consensus         2 ~~~~g~l~d~~g-----r~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~--~~~   72 (147)
                      .++.|.++|-+.     ||+-++++.++..+....++....  .+.....+..++..++........-+.+.|..  .++
T Consensus        41 Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~  120 (433)
T PF03092_consen   41 KPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAIAVVLLFLASFGYAFADVAADALVVELARREPE  120 (433)
T ss_pred             hhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCc
Confidence            367899999873     555566677776555555544421  34555566667777888888888888888876  233


Q ss_pred             chhHHHHHHHhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhccC
Q psy4740          73 ERGKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYN  131 (147)
Q Consensus        73 ~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (147)
                      .|+...+.......+|.+++..++|.+.+.  .+++..|.+.+.+..+..+...+..+|
T Consensus       121 ~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~--~~~~~~f~i~~~~~~l~~~~~~~~~~e  177 (433)
T PF03092_consen  121 SRGDLQSFVWGVRSVGSLVGSLLSGPLLDS--FGPQGVFLISAALPLLMLIVALFLLEE  177 (433)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHhhhhhhhc--CCCeEEehHHHHHHHHHHHHHHHhhhh
Confidence            488999999999999999999999999888  688888988887777766666666665

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=98.63  E-value=8.4e-07  Score=63.12  Aligned_cols=101  Identities=22%  Similarity=0.178  Sum_probs=76.0

Q ss_pred             Ccchhhhhhhhc-----chHHHH-HHHHHHHHHHHHhhhc----cc-------ccHH---HHHHHHHHHhhccccCcccH
Q psy4740           2 HIPGGLLAQKFG-----GKHTLG-FGILSTAIFTLLTPFA----AR-------QSAN---WLIALRFFEGLGEGTTFPAL   61 (147)
Q Consensus         2 ~~~~g~l~d~~g-----r~~~~~-~~~~~~~~~~~~~~~~----~~-------~~~~---~~~~~~~l~g~~~~~~~~~~   61 (147)
                      ++.+|+.||+.+     ||.-++ .+..+.+.+..++...    ..       +.+.   ...+.-.+.|++.+......
T Consensus        31 R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~~~~g~~~a~l~F~l~G~G~~~s~T~~  110 (403)
T PF03209_consen   31 RVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGPFWLGLALAALAFLLYGLGVHASGTSF  110 (403)
T ss_pred             HHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHhhHhHhHHHH
Confidence            357899999998     776555 4566666655554432    11       1221   22344567788888888889


Q ss_pred             HHHhhhhcCCcchhHHHHHHHhhhhhHHHHHHHHHHHHHhh
Q psy4740          62 NTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLKY  102 (147)
Q Consensus        62 ~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~  102 (147)
                      .+++.|..|+|+|++..++.....-+|.+++..+.+.+.+.
T Consensus       111 lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~  151 (403)
T PF03209_consen  111 LALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDP  151 (403)
T ss_pred             HHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccc
Confidence            99999999999999999999999999999999999887766

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=98.63  E-value=1.3e-06  Score=63.49  Aligned_cols=133  Identities=17%  Similarity=0.230  Sum_probs=100.4

Q ss_pred             Ccchhhhhhh----hcch-HHHHHHHHHHHHHHHHhhhccc----ccHHHHHHHHHHHhhccccCcccHHHHhhhhcC-C
Q psy4740           2 HIPGGLLAQK----FGGK-HTLGFGILSTAIFTLLTPFAAR----QSANWLIALRFFEGLGEGTTFPALNTLLAQWVP-P   71 (147)
Q Consensus         2 ~~~~g~l~d~----~gr~-~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~   71 (147)
                      -|+.|.+.||    +||+ +.++++.+-.++.+.++...++    .+....++...+.+++......+..++.+|+.+ +
T Consensus        65 DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~  144 (467)
T COG2211          65 DPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSMTGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDP  144 (467)
T ss_pred             cchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCcccCcchHHHHHHHHHHHHHHHheeCchhhcchhhcCCH
Confidence            3678888885    6754 5667788888888888776642    345566677788899999998888999999864 5


Q ss_pred             cchhHHHHHHHhhhhhHHHHHHHHHHHHHhhc-----CCChhHHHHHHHHHHHHHHHHHHhhccCCCC
Q psy4740          72 TERGKIGSFVFAGNQIGTVFSSFLSGFLLKYT-----DGDWPEIFYLFGILGVLWFVAWCFLCYNDPA  134 (147)
Q Consensus        72 ~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (147)
                      ++|.+..+.-....++|..+...+...+....     ..+|+...++.+++.++..+.+++..+|+..
T Consensus       145 ~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~i~~l~~~~~v~ER~~  212 (467)
T COG2211         145 QERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGVILLLFCFFNVKERVV  212 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcccC
Confidence            89999999988888888777777666655432     2478888888888888777777777776543

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=98.61  E-value=9.9e-07  Score=64.73  Aligned_cols=131  Identities=14%  Similarity=0.019  Sum_probs=101.3

Q ss_pred             chhhhhhhhcc-hHHHHHHHHHHHHHHHHhhhccc--cc-----------------HHHHHHHHHHHhhccccCcccHHH
Q psy4740           4 PGGLLAQKFGG-KHTLGFGILSTAIFTLLTPFAAR--QS-----------------ANWLIALRFFEGLGEGTTFPALNT   63 (147)
Q Consensus         4 ~~g~l~d~~gr-~~~~~~~~~~~~~~~~~~~~~~~--~~-----------------~~~~~~~~~l~g~~~~~~~~~~~~   63 (147)
                      ..-++.+|+|+ |++...+.++.+++.....+.+.  +|                 .+..++...+.|+..+.....-++
T Consensus       324 ~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~siPfa  403 (477)
T TIGR01301       324 GMEKLCRGWGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAITYSIPFA  403 (477)
T ss_pred             HHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHHHHHHHHhHH
Confidence            34567889984 67767787777777666654411  00                 256667778899999999999999


Q ss_pred             HhhhhcCC--cchhHHHHHHHhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhccCCCC
Q psy4740          64 LLAQWVPP--TERGKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPA  134 (147)
Q Consensus        64 ~~~~~~~~--~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (147)
                      ++++..++  ++.|..+|+.+.+..+..++..+..+.+.+..+.+-..++.+.++..++..+..++..|+.+.
T Consensus       404 l~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~~~~~~~~  476 (477)
T TIGR01301       404 LASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALILLPRPRV  476 (477)
T ss_pred             HHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence            99999885  556999999999999999999988888666655567788889999998888888888877543

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=98.61  E-value=3.3e-07  Score=66.16  Aligned_cols=114  Identities=15%  Similarity=0.079  Sum_probs=83.8

Q ss_pred             CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHH
Q psy4740           2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFV   81 (147)
Q Consensus         2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~   81 (147)
                      .+..+++.||+++|+++.+.....++.+++....  ++.. ....-++.|.+.+..+|...+...+..+++.+.....+.
T Consensus       286 R~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~~--~~~~-~~~~l~~~glf~s~~fp~i~sl~~~~~g~~~~~~s~~l~  362 (410)
T TIGR00885       286 RFIGTWLISYLAAHKVLMAYAIIGMALCLGSIFA--GGHV-GLYCLTLCSAFMSLMFPTIYGIALKGLGQDTKYGAAGLV  362 (410)
T ss_pred             HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHc--CChH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHH
Confidence            4568899999999999888888877777777665  4433 356667788888889999999999999877654444443


Q ss_pred             HhhhhhHHHHHHHHHHHHHhhc---CC-ChhHHHHHHHHHHHH
Q psy4740          82 FAGNQIGTVFSSFLSGFLLKYT---DG-DWPEIFYLFGILGVL  120 (147)
Q Consensus        82 ~~~~~~g~~~~~~~~~~l~~~~---~~-~~~~~~~~~~~~~~~  120 (147)
                      ..  .+|+.+.|.+.|.+.|..   .. +.+..|++.....+.
T Consensus       363 ~~--~~Gga~~p~l~G~~~d~~~~~~~~~~~~~~~~~~~~~~~  403 (410)
T TIGR00885       363 MA--IIGGGIVPPLQGFIIDMKEIAAAPAVNTSFILPLLCFAV  403 (410)
T ss_pred             HH--HhccchHHHHHHHHHHHhcccccCccchHHHHHHHHHHH
Confidence            33  389999999999999852   11 467777775554443

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>KOG0254|consensus

Probab=98.59  E-value=7.6e-07  Score=66.02  Aligned_cols=132  Identities=18%  Similarity=0.128  Sum_probs=82.7

Q ss_pred             chhhhhhhhcchHHHHHHHHHHHHHHHHhhhccc--c-------c--HHHHHHHHHHHhhccccCcccHHHHhhhhcCCc
Q psy4740           4 PGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAAR--Q-------S--ANWLIALRFFEGLGEGTTFPALNTLLAQWVPPT   72 (147)
Q Consensus         4 ~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~--~-------~--~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~   72 (147)
                      +...+.||+|||+.++.+.....++..+++....  .       .  ...+....+..........+....+.+|.+|.+
T Consensus       348 ~~~~lvd~~gRr~lll~s~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~  427 (513)
T KOG0254|consen  348 VATYLVDRFGRRKLLLFGAAGMSICLVILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLR  427 (513)
T ss_pred             HHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHh
Confidence            4568999999999999999999888887764410  0       1  111122222222333334455567889999999


Q ss_pred             chhHHHHHHHhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHH-HHHhhccCCCCCCC
Q psy4740          73 ERGKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFV-AWCFLCYNDPASHP  137 (147)
Q Consensus        73 ~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  137 (147)
                      .|+.+.++..........+-......+.+.  .++...|........+... ...+..||++....
T Consensus       428 ~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~--~~~~~~f~~f~~~~~~~~~~fv~~~~pETkg~sl  491 (513)
T KOG0254|consen  428 LRSKGASLAVAVNWLWNFLISFFFPFITEA--LGIGGTFGYFGGICLLSLIIFVFFFVPETKGLTL  491 (513)
T ss_pred             HHhhhHHHHHHHHHHHHHHHHHHHHHHHHh--ccccchHHHHHHHHHHHHHHHheEEcccCCCCcH
Confidence            999999997776665555443333333333  2234556655555555555 67777888766543

>KOG0255|consensus

Probab=98.55  E-value=2.2e-06  Score=63.61  Aligned_cols=129  Identities=19%  Similarity=0.214  Sum_probs=91.0

Q ss_pred             hhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccH-HHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHHHhh
Q psy4740           6 GLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSA-NWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVFAG   84 (147)
Q Consensus         6 g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~   84 (147)
                      +...|++|||.....+..+..++++..+....... ....+...+...+.+..+.....+.+|.+|+..|..+.+.....
T Consensus       371 ~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~pt~~r~~~~~~~~~~  450 (521)
T KOG0255|consen  371 GLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDDLGGWLHWILPLLGKFFIGSAFNLIFLYSAELIPTVVRNTAVGAISAA  450 (521)
T ss_pred             HHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence            56789999999999999999999988877743332 13444444444555556666788999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhccCCCCCCC
Q psy4740          85 NQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPASHP  137 (147)
Q Consensus        85 ~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (147)
                      ..++.+++|.+........ ......  +.+....+.......+.||+...+.
T Consensus       451 ~~~~~i~ap~~~~~~~~~~-~~~~~~--~~~~~~~l~~~~~~~~lpet~~~~l  500 (521)
T KOG0255|consen  451 ARLGSILAPLFPLLLRQMF-PLLGLI--LFGWLALLLGLLSLLLLPETKGKPL  500 (521)
T ss_pred             HHHHHHHHHHHHHHHhhhc-ccchHH--HHHHHHHHHHHHHHhcCcccCCCCC
Confidence            9999999998886554431 122222  2344444445555567787665544

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=98.54  E-value=9.4e-07  Score=64.25  Aligned_cols=100  Identities=25%  Similarity=0.314  Sum_probs=83.4

Q ss_pred             cchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcC-------Ccchh
Q psy4740           3 IPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVP-------PTERG   75 (147)
Q Consensus         3 ~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-------~~~r~   75 (147)
                      +++.++.+|+|+|+++.++.++.+++..+..+...++..+.++..++.+++.+...+...+.++|..+       .+.-|
T Consensus       290 ~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eG  369 (467)
T COG2211         290 ILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREG  369 (467)
T ss_pred             HhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchh
Confidence            56788999999999999999999999999988855677888888899999999999999998887763       34455


Q ss_pred             HHHHHHHhhhhhHHHHHHHHHHHHHhh
Q psy4740          76 KIGSFVFAGNQIGTVFSSFLSGFLLKY  102 (147)
Q Consensus        76 ~~~~~~~~~~~~g~~~~~~~~~~l~~~  102 (147)
                      ...+......-+|..++..+.++....
T Consensus       370 i~~s~~tF~~K~g~ala~~~~g~~L~~  396 (467)
T COG2211         370 IVYSGMTFFRKLGLALAGFIPGWILGA  396 (467)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666777778888888888888887765

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=98.54  E-value=1.8e-06  Score=61.19  Aligned_cols=95  Identities=15%  Similarity=0.056  Sum_probs=56.9

Q ss_pred             CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhc--ccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHH
Q psy4740           2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFA--ARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGS   79 (147)
Q Consensus         2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~   79 (147)
                      +++.|++.||+|||+.+..+..+..+........  ...+.+...+...+.+.+.+.........+.|..| +++++..+
T Consensus       247 ~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~  325 (377)
T PRK11102        247 TIINSRFVRRVGALNMLRFGLWIQFIMGIWLVVSALLDLGFWALVVGVAAFVGCVSMISSNAMAVILDEFP-HMAGTASS  325 (377)
T ss_pred             HHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHhcccc-ccchHHHH
Confidence            3568999999999999888776544433222111  11234444444444444444445555566777665 78999998


Q ss_pred             HHHhh-hhhHHHHHHHHHH
Q psy4740          80 FVFAG-NQIGTVFSSFLSG   97 (147)
Q Consensus        80 ~~~~~-~~~g~~~~~~~~~   97 (147)
                      ..+.. ..+|..+++.++.
T Consensus       326 ~~~~~~~~~g~~~g~~~~~  344 (377)
T PRK11102        326 LAGTLRFGIGAIVGALLSL  344 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHh
Confidence            86653 4466666665544

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=98.52  E-value=8.8e-07  Score=63.11  Aligned_cols=111  Identities=17%  Similarity=0.186  Sum_probs=87.2

Q ss_pred             HHHHHHHHHHHHHHHHhhhcc-cc------cHHHHHHHHHHHhhccccCcccHHHHhhhhcCCc---chhHHHHHHHhhh
Q psy4740          16 HTLGFGILSTAIFTLLTPFAA-RQ------SANWLIALRFFEGLGEGTTFPALNTLLAQWVPPT---ERGKIGSFVFAGN   85 (147)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~-~~------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~---~r~~~~~~~~~~~   85 (147)
                      |+++++.++..++..+...+. ..      +...++++..+.++|.|+.-++..++..|.++++   +|.+.+++++...
T Consensus         2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i   81 (372)
T PF00854_consen    2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI   81 (372)
T ss_dssp             HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred             HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence            567888888888888854431 11      2357888888999999999999999999998765   5677888899999


Q ss_pred             hhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhh
Q psy4740          86 QIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFL  128 (147)
Q Consensus        86 ~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (147)
                      ++|..+++...+.+.++  .+|...|.+..+..++..+..+.-
T Consensus        82 n~G~~~~~~~~~~i~~~--~~~~~~f~i~~~~~~~~~~~f~~~  122 (372)
T PF00854_consen   82 NIGSLFSPTLVPYIQQN--YGWFLGFGIPAIGMLLALIVFLSG  122 (372)
T ss_dssp             HHHHHHHHHCCCHHHHC--S-HHHHHHHHHHHHHHHHHHHHCC
T ss_pred             hhhhHhhcccchhhccc--cchhhhhhHHHHHHHHHHHHHHhC
Confidence            99999999999999887  799999999988887755554433

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=98.49  E-value=5.3e-07  Score=64.70  Aligned_cols=127  Identities=17%  Similarity=0.131  Sum_probs=67.4

Q ss_pred             CCcchhhhhhhhcchHHHHHHHHHH--HHHHHHh-hhc--ccccHH-HHHHHHHHHhhccccCcccHHHHhhhhcCCcch
Q psy4740           1 MHIPGGLLAQKFGGKHTLGFGILST--AIFTLLT-PFA--ARQSAN-WLIALRFFEGLGEGTTFPALNTLLAQWVPPTER   74 (147)
Q Consensus         1 ~~~~~g~l~d~~gr~~~~~~~~~~~--~~~~~~~-~~~--~~~~~~-~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r   74 (147)
                      .||+.|.++||.|.||-+++.....  ..+.+.. .+.  .+.|.+ ..+++-+..++......|..-+++.+..  ++.
T Consensus        59 ~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~pff~~v~~pll~~n~~lg~iig~i~l~~~f~~~~~~~Ea~~er~s--r~~  136 (412)
T PF01306_consen   59 AQPVYGFISDKLGLKKHLLWFIAILLLLFGPFFIYVFGPLLQSNFWLGAIIGGIYLGLVFNAGVPLSEAYAERVS--RRN  136 (412)
T ss_dssp             THHHHHHHHHHCTTCSHHHHHHHHHHHTCHHHHHHTHHHHHHTT-HHHHHHTTTTTTTTTTTHHHHHHHHHHHHH--HHH
T ss_pred             HHHhHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHH--HHh
Confidence            3678899999999666554432222  2222221 111  012321 1222222333333333344444444332  334


Q ss_pred             hHHHHHHHhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhccCC
Q psy4740          75 GKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYND  132 (147)
Q Consensus        75 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (147)
                      +.-.|-.-...++|..++..++|.+.+.   +-...||+.....++..++.....|+.
T Consensus       137 ~feYG~~R~wGSig~ai~s~~~G~L~~i---~p~~~fwi~s~~~~il~lll~~~~~~~  191 (412)
T PF01306_consen  137 GFEYGRARMWGSIGFAIASLLAGILFNI---NPNIIFWIASAAAIILLLLLLLLKPDV  191 (412)
T ss_dssp             SS-HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHSS---S
T ss_pred             cCCcchHHHHhhHHHHHHHHHhheeeee---CccHHHHHHHHHHHHHHHHHHHcCCcC
Confidence            4455567778889999999999999876   556778877766666555555555443

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=98.48  E-value=1.6e-06  Score=54.36  Aligned_cols=96  Identities=19%  Similarity=0.240  Sum_probs=79.9

Q ss_pred             cchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHHH
Q psy4740           3 IPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVF   82 (147)
Q Consensus         3 ~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~   82 (147)
                      ++.+.+.+++|+|+.+.++.+...+...... -  ++.+.++..-++.|++.+..+.....++.+..++++|++..++.-
T Consensus        55 l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~~-~--~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~~~~~~~ifw  131 (156)
T PF05978_consen   55 LFAPSIVNKLGPKWSMILGSLGYAIYIASFF-Y--PNSYTLYPASALLGFGAALLWTAQGTYLTSYSTEETIGRNTGIFW  131 (156)
T ss_pred             HhHHHHHHHHhhHHHHHHHHHHHHHHHHHHH-h--hhHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHHHHhhHHHHHH
Confidence            4567788999999999999999887665543 3  567788899999999999999999999999999999999999988


Q ss_pred             hhhhhHHHHHHHHHHHHHh
Q psy4740          83 AGNQIGTVFSSFLSGFLLK  101 (147)
Q Consensus        83 ~~~~~g~~~~~~~~~~l~~  101 (147)
                      ...+.+.++|..+.-.+.+
T Consensus       132 ~i~~~s~i~G~~~~~~~~~  150 (156)
T PF05978_consen  132 AIFQSSLIFGNLFLFFIFQ  150 (156)
T ss_pred             HHHHHHHHHHHHHHHHHHh
Confidence            8888787777766655543

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>PRK11462 putative transporter; Provisional

Probab=98.43  E-value=1.7e-06  Score=63.37  Aligned_cols=100  Identities=16%  Similarity=0.108  Sum_probs=64.1

Q ss_pred             cchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcC-------Ccchh
Q psy4740           3 IPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVP-------PTERG   75 (147)
Q Consensus         3 ~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-------~~~r~   75 (147)
                      +++++++||+|+|+.+..+.....+...+..+....+...+++..++.|++.+...+...+.++|..+       .+.-|
T Consensus       281 ~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g  360 (460)
T PRK11462        281 ALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVPMQASITMFVFIFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTG  360 (460)
T ss_pred             HHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHhcCCCchH
Confidence            46899999999998877655544443333333221233334444566677666666666667777665       22334


Q ss_pred             HHHHHHHhhhhhHHHHHHHHHHHHHhh
Q psy4740          76 KIGSFVFAGNQIGTVFSSFLSGFLLKY  102 (147)
Q Consensus        76 ~~~~~~~~~~~~g~~~~~~~~~~l~~~  102 (147)
                      ...+.......+|..+++.+.+.+.+.
T Consensus       361 ~~~a~~~f~~Klg~alg~~i~g~iL~~  387 (460)
T PRK11462        361 ISFAGTLFVLKLGLAFGGALIGWMLAY  387 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445666678889999999999887765

>PRK09848 glucuronide transporter; Provisional

Probab=98.38  E-value=5.3e-06  Score=60.45  Aligned_cols=96  Identities=13%  Similarity=0.157  Sum_probs=55.7

Q ss_pred             Ccchhhhhhhh----cchHHH-HHHHHHHHHHHHHhhhcc---cc--cHHHHHHHHHHHhhccccCcccHHHHhhhhcCC
Q psy4740           2 HIPGGLLAQKF----GGKHTL-GFGILSTAIFTLLTPFAA---RQ--SANWLIALRFFEGLGEGTTFPALNTLLAQWVPP   71 (147)
Q Consensus         2 ~~~~g~l~d~~----gr~~~~-~~~~~~~~~~~~~~~~~~---~~--~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~   71 (147)
                      .++.|+++||.    |||+.. .++.+...+...+....+   ..  ..........+.+++.+...+...+...|..++
T Consensus        61 ~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~  140 (448)
T PRK09848         61 DVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPTDWSHSSKVVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQ  140 (448)
T ss_pred             hhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCcCCCCcchHHHHHHHHHHHHHHHHHHhcccHhhhhhhhcCC
Confidence            57899999996    666644 555554444443332111   01  122334445667777887887778887777644


Q ss_pred             -cchhHHHHHHHhhhh-----hHHHHHHHHHH
Q psy4740          72 -TERGKIGSFVFAGNQ-----IGTVFSSFLSG   97 (147)
Q Consensus        72 -~~r~~~~~~~~~~~~-----~g~~~~~~~~~   97 (147)
                       ++|.+..+......+     ++..++|.+..
T Consensus       141 ~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~  172 (448)
T PRK09848        141 PQSRARLGAARGIAASLTFVCLAFLIGPSIKN  172 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             678877665543323     44455555544

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=98.36  E-value=6e-06  Score=59.53  Aligned_cols=127  Identities=24%  Similarity=0.326  Sum_probs=74.4

Q ss_pred             Ccchhhhhhhhc-chHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHH
Q psy4740           2 HIPGGLLAQKFG-GKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSF   80 (147)
Q Consensus         2 ~~~~g~l~d~~g-r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~   80 (147)
                      ++++|.++||.+ +|+.+.+..++.++........  ++++.+....++..+......|...++..+...+  ++.-.+-
T Consensus        54 ~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~~--~~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~~--~~~~YG~  129 (400)
T PF03825_consen   54 PPFWGAIADRFGSAKRILALLSLLSALALLLLAFS--SSFWWLFVIMLLFSFFFSPTMPLSDSIALSYLGD--RGKDYGR  129 (400)
T ss_pred             HHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHccHHHHHHHHHHHHccc--ccCCCCc
Confidence            578999999986 6677767666666655555555  6777777777777877777788888888777642  3333444


Q ss_pred             HHhhhhhHHHHHHHH-HHHHHhhcC-CChhHHHHHHHHHHHHHHHHHHhhccCCC
Q psy4740          81 VFAGNQIGTVFSSFL-SGFLLKYTD-GDWPEIFYLFGILGVLWFVAWCFLCYNDP  133 (147)
Q Consensus        81 ~~~~~~~g~~~~~~~-~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (147)
                      .....++|-+++... ...+....+ .+....+++.+...++.... .+..|+.|
T Consensus       130 iRlwGSiGf~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ll~~~-~l~lp~~~  183 (400)
T PF03825_consen  130 IRLWGSIGFIVAALAFGGLLGGYLGISGTSLIFYIAAILSLLLAGF-ALFLPKTP  183 (400)
T ss_pred             chhhhhHHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHH-HHhCCCCc
Confidence            444555555555433 222322211 12234555555544433322 33445544

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=98.35  E-value=2.2e-05  Score=56.44  Aligned_cols=123  Identities=24%  Similarity=0.235  Sum_probs=99.7

Q ss_pred             cchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHHH
Q psy4740           3 IPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVF   82 (147)
Q Consensus         3 ~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~   82 (147)
                      ++...+.|..+.|++++++.+...+...+..+.  ++...+-+..+.-|++.+. .....+++-...|+++-.++.+...
T Consensus        59 ~~vflltd~l~Ykpviil~~~~~i~t~~lll~~--~sv~~mq~~q~~yg~~~a~-evay~sYiys~v~~~~yq~vts~~r  135 (412)
T PF01770_consen   59 LPVFLLTDYLRYKPVIILQALSYIITWLLLLFG--TSVLAMQLMQFFYGLATAA-EVAYYSYIYSVVDKEHYQKVTSYTR  135 (412)
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHHH-HHHHHHHheeecCHHHHHHHHHHHH
Confidence            456788999999999999999999888888888  8999999999999998775 4556777777778888889999999


Q ss_pred             hhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhh
Q psy4740          83 AGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFL  128 (147)
Q Consensus        83 ~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (147)
                      ...-+|..++..++-.+....+.+++...++......+..+..+++
T Consensus       136 aa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~~~~~fL  181 (412)
T PF01770_consen  136 AATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLALLIALFL  181 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHc
Confidence            9999999999999988888655677888777766665544444443

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=98.28  E-value=2.1e-05  Score=56.24  Aligned_cols=63  Identities=21%  Similarity=0.230  Sum_probs=52.9

Q ss_pred             cHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHHHhhhhhHHHHHHHHHHHHHhh
Q psy4740          39 SANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLKY  102 (147)
Q Consensus        39 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~  102 (147)
                      +.+......++.+.+.+...+....+..|.+| ++++...++.+....+|..+++.+.+.+.+.
T Consensus       298 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~~~~~~~  360 (394)
T PRK11652        298 NVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLSAMLPQT  360 (394)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence            45566777788889888888989998989886 5789999999999999999999998887554

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=98.26  E-value=1.8e-05  Score=55.73  Aligned_cols=123  Identities=19%  Similarity=0.203  Sum_probs=90.9

Q ss_pred             chhhhhhh-hcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCC-cchhHHHHHH
Q psy4740           4 PGGLLAQK-FGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPP-TERGKIGSFV   81 (147)
Q Consensus         4 ~~g~l~d~-~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-~~r~~~~~~~   81 (147)
                      ....+.+| .++|+.......+..++.+.+.+.+..++...   .++.|++.|..++....++.+..++ ++-++..++.
T Consensus       262 l~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~P~~~~~lw---~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgma  338 (395)
T COG2807         262 LIPLLARRSKNQRPLVVLALLLMLVGLVGLLLAPGQLPILW---ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMA  338 (395)
T ss_pred             HHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhhHHHHH---HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHh
Confidence            34566775 56888888888888888888877633333222   4899999999999999998887655 4445555667


Q ss_pred             HhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhcc
Q psy4740          82 FAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCY  130 (147)
Q Consensus        82 ~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (147)
                      +...-+=..++|.+.|.+-|.++ +|+.+........++..+..+..-|
T Consensus       339 Qg~GYllAa~GP~l~G~lhDa~g-sw~~~~~~l~~~~i~m~i~Gl~a~r  386 (395)
T COG2807         339 QGVGYLLAAFGPWLFGFLHDATG-SWSAPLVLLALATLLMLIFGLRAGR  386 (395)
T ss_pred             hhhhHHHHhhhhhhHhHHHHhcC-ChHHHHHHHHHHHHHHHHHHhhcch
Confidence            77767777889999999998864 8998888877777766666555433

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=98.22  E-value=3.5e-06  Score=59.42  Aligned_cols=86  Identities=20%  Similarity=0.216  Sum_probs=58.7

Q ss_pred             CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccc--cHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHH
Q psy4740           2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQ--SANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGS   79 (147)
Q Consensus         2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~   79 (147)
                      +++.|+++||+|+|+.+..+......+..........  +.....+...+.++..+...+.....+.|..| +++|+..|
T Consensus       278 ~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~g~~~g  356 (366)
T TIGR00886       278 RPLGGAISDRLGGARKLLMSFLGVAMGAFLVVLGLVSPLSLAVFIVLFVALFFFSGAGNGSTFALVPHIFR-RATGAVSG  356 (366)
T ss_pred             hhccchHHHhhccchhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhccccchhhhcchhhch-hhcccHHH
Confidence            4678999999999988877766666555544433212  44444444455555555556666777788876 69999999


Q ss_pred             HHHhhhhhH
Q psy4740          80 FVFAGNQIG   88 (147)
Q Consensus        80 ~~~~~~~~g   88 (147)
                      +.+...++|
T Consensus       357 ~~~~~~~~g  365 (366)
T TIGR00886       357 LVGAIGNLG  365 (366)
T ss_pred             HHHHhccCC
Confidence            988877665

>KOG3764|consensus

Probab=98.22  E-value=1.1e-05  Score=57.56  Aligned_cols=124  Identities=20%  Similarity=0.164  Sum_probs=89.1

Q ss_pred             CCcchhhhhhhhc--chHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcC---Cc---
Q psy4740           1 MHIPGGLLAQKFG--GKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVP---PT---   72 (147)
Q Consensus         1 ~~~~~g~l~d~~g--r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~---~~---   72 (147)
                      +..+.|.++||++  |-.....+.+...+.+....++  +++..+++-++..+++.+...........+..+   .+   
T Consensus       322 g~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~--~~~~~L~vp~~~l~~~i~~~dasl~P~l~~lvd~rh~s~~~  399 (464)
T KOG3764|consen  322 GTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPFA--TSIAQLWVPNFGLGFGIGLADASLIPTLGYLVDPRHVSGFN  399 (464)
T ss_pred             cCchHHHHHHhcCchhHHHHHHHHHHHHHHhchhHhh--hhHHHHhhhhHHHHHHHHHHHHHHhhhhHHhcchhhccccc
Confidence            3567899999999  4333344555555555555666  788888888777777666655444444444333   23   


Q ss_pred             chhHHHHHHHhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhh
Q psy4740          73 ERGKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFL  128 (147)
Q Consensus        73 ~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (147)
                      .-|...++.....++|..+||.+++.+.+.  .|++|...+.+....+...+...+
T Consensus       400 vYGsVyaIad~a~sla~a~GP~~gg~iv~~--iGF~wl~~iig~~n~iyapvl~ll  453 (464)
T KOG3764|consen  400 VYGSVYAIADAAFSLAYAIGPTFGGSLVEA--IGFEWLMTIIGILNLIYAPVLLLL  453 (464)
T ss_pred             eeeeHHHHHHHHHHHhhhccccccchheee--hhHHHHHHHHHHHHHHHHHHHHHH
Confidence            557888889999999999999999999988  799998888888877766555544

>KOG2532|consensus

Probab=98.15  E-value=1.3e-05  Score=58.84  Aligned_cols=130  Identities=13%  Similarity=0.200  Sum_probs=77.2

Q ss_pred             cchhhhhhhhcch---------HHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcc
Q psy4740           3 IPGGLLAQKFGGK---------HTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTE   73 (147)
Q Consensus         3 ~~~g~l~d~~gr~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~   73 (147)
                      +.+|.++||.-+|         -.-.++....++.....++....+.+..+++..+.-...|...+....-..+. .+++
T Consensus       312 ~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~~~~~~~~a~~~l~~~~~~~g~~~~Gf~~~~~~~-apq~  390 (466)
T KOG2532|consen  312 FVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFTSDEHRLLAVILLTIAIGLSGFNISGFYKNHQDI-APQH  390 (466)
T ss_pred             HHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeeecCCCcchHHHHHHHHHHHHcccchhhhHhhhhhc-cchH
Confidence            4678999987552         22223444444444444554322221222222111111222222222223332 5678


Q ss_pred             hhHHHHHHHhhhhhHHHHHHHHHHHHHhh-cCCChhHHHHHHHHHHHHHHHHHHhhccCCC
Q psy4740          74 RGKIGSFVFAGNQIGTVFSSFLSGFLLKY-TDGDWPEIFYLFGILGVLWFVAWCFLCYNDP  133 (147)
Q Consensus        74 r~~~~~~~~~~~~~g~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (147)
                      -+..+++.+....+..+++|.+.+.+.+. +...|+..|++.+++.++..+...++-..++
T Consensus       391 a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~i~~~~~i~f~~f~s~e~  451 (466)
T KOG2532|consen  391 AGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIAAGILIVGNIIFLFFGSGEP  451 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHHHHHHHHhchheeEeecCcc
Confidence            89999999999999999999999998852 2258999999999998887666555544433

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=98.06  E-value=6.7e-05  Score=54.31  Aligned_cols=80  Identities=14%  Similarity=0.102  Sum_probs=53.4

Q ss_pred             ccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHHHhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHH
Q psy4740          38 QSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGIL  117 (147)
Q Consensus        38 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  117 (147)
                      +++...++..++.+++.+...+.......+ -.+..+|++.++.+.....+...++...+.+.++   +-...|....++
T Consensus       310 ~~~~~~~~~~~l~~~G~~~~~p~~~~~al~-~~~~~~G~a~a~~~~~~~~~~~~~~~~~g~~~~~---~~~~~~~~~~~~  385 (413)
T PRK15403        310 HVWLWSVLGTSLYAFGIGLIFPTLFRFTLF-SNNLPKGTVSASLNMVILMVMAVSVEIGRWLWFN---GGRLPFHLLAVV  385 (413)
T ss_pred             ccHHHHHHHHHHHHHHHHHHhHHHHHHHhc-cCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHc---CCchHHHHHHHH
Confidence            344445667778888888777766643322 2233579999998888888888888888888776   445556555555


Q ss_pred             HHHH
Q psy4740         118 GVLW  121 (147)
Q Consensus       118 ~~~~  121 (147)
                      ..+.
T Consensus       386 ~~~~  389 (413)
T PRK15403        386 AGVI  389 (413)
T ss_pred             HHHH
Confidence            4443

>KOG4686|consensus

Probab=98.01  E-value=2.2e-06  Score=58.74  Aligned_cols=101  Identities=19%  Similarity=0.215  Sum_probs=83.2

Q ss_pred             Ccchhhhhhh-hcchHHHHHHHHHHHHHHHHhhhc-ccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHH
Q psy4740           2 HIPGGLLAQK-FGGKHTLGFGILSTAIFTLLTPFA-ARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGS   79 (147)
Q Consensus         2 ~~~~g~l~d~-~gr~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~   79 (147)
                      +++.|++.|| +|-|..-.+-++...++-++++.. ..+.++.+..+|++.|+|.-......+.++..++..|+-...+|
T Consensus        96 cffgGflidr~fgir~gtii~~~fv~~GqliFa~Ggi~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKELn~vfG  175 (459)
T KOG4686|consen   96 CFFGGFLIDRRFGIRLGTIILCIFVFLGQLIFAAGGISHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKELNFVFG  175 (459)
T ss_pred             eeecceeehhhhhhhHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhheeeccCchhhhhhhcceeEEEecCccccchhh
Confidence            4678999996 788777666667777777766544 23679999999999999888888888999999999999999999


Q ss_pred             HHHhhhhhHHHHHHHHHHHHHhh
Q psy4740          80 FVFAGNQIGTVFSSFLSGFLLKY  102 (147)
Q Consensus        80 ~~~~~~~~g~~~~~~~~~~l~~~  102 (147)
                      +..+...+|+.+--.+.+++++.
T Consensus       176 lqlSvAR~GstvNf~lm~~ly~~  198 (459)
T KOG4686|consen  176 LQLSVARLGSTVNFLLMPFLYDT  198 (459)
T ss_pred             HHHHHHHhhceeeeeecHHHHHH
Confidence            99999999988877777777765

>KOG3626|consensus

Probab=97.92  E-value=0.0001  Score=56.42  Aligned_cols=132  Identities=17%  Similarity=0.226  Sum_probs=99.0

Q ss_pred             cchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcc-------------------c--------------------------
Q psy4740           3 IPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAA-------------------R--------------------------   37 (147)
Q Consensus         3 ~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~-------------------~--------------------------   37 (147)
                      .+..+...|..|-+.+-++.++.+++++++++-+                   .                          
T Consensus       150 ~fVsYfG~r~HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~  229 (735)
T KOG3626|consen  150 IFVSYFGSRGHRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKRE  229 (735)
T ss_pred             HhHHHhccccCccceeeechhHHHHHHHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCccccc
Confidence            3456667777777888888888888887765321                   0                          


Q ss_pred             --cc--H-HHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHHHhhhhhHHHHHHHHHHHHHhhc---------
Q psy4740          38 --QS--A-NWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLKYT---------  103 (147)
Q Consensus        38 --~~--~-~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~---------  103 (147)
                        .+  + ..+.+++++.|+|....++...+|+-|...+++-...+|+.+....+|.++|.++++.+....         
T Consensus       230 ~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~  309 (735)
T KOG3626|consen  230 KESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIG  309 (735)
T ss_pred             ccCCchhHHHHHHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCC
Confidence              00  2 255678899999999999999999999999999999999999999999999999999877532         


Q ss_pred             ----C----CChhHHHHHHHHHHHHHHHHHHhhccCCCC
Q psy4740         104 ----D----GDWPEIFYLFGILGVLWFVAWCFLCYNDPA  134 (147)
Q Consensus       104 ----~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (147)
                          |    ..|..-|++.+.+.++..+..+++.++.|+
T Consensus       310 it~~DPrWIGAWWlGFLi~g~~~~~~a~p~f~fPk~lp~  348 (735)
T KOG3626|consen  310 ITPTDPRWIGAWWLGFLICGALLLFSAVPLFFFPKELPK  348 (735)
T ss_pred             CCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhCcccCcc
Confidence                0    135555667777777766666665544443

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=97.84  E-value=0.00071  Score=48.60  Aligned_cols=120  Identities=23%  Similarity=0.233  Sum_probs=92.3

Q ss_pred             hhhhhh-hhcchHHHHHHHHHHHHHHHHhhhc-ccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHHH
Q psy4740           5 GGLLAQ-KFGGKHTLGFGILSTAIFTLLTPFA-ARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVF   82 (147)
Q Consensus         5 ~g~l~d-~~gr~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~   82 (147)
                      .|++.. |.++++...+++...+++......+ ...+.+.+....++.|++.|.......+.+.+..++++.|..+|.+.
T Consensus       264 ~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WG  343 (403)
T PF03209_consen  264 AGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWG  343 (403)
T ss_pred             HHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHH
Confidence            344444 6788888888888777776655443 23567788888999999999999999999999999999999999999


Q ss_pred             hhhhhHHHHHHHHHHHHHhhc--------CCChhHHHHHHHHHHHHHHHH
Q psy4740          83 AGNQIGTVFSSFLSGFLLKYT--------DGDWPEIFYLFGILGVLWFVA  124 (147)
Q Consensus        83 ~~~~~g~~~~~~~~~~l~~~~--------~~~~~~~~~~~~~~~~~~~~~  124 (147)
                      ..+.++..++..+++.+.|..        ..+|...|.+.++..++...+
T Consensus       344 aaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a~~l  393 (403)
T PF03209_consen  344 AAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLAALVL  393 (403)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHH
Confidence            999999999999998877632        134666677666665554333

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=97.76  E-value=0.00017  Score=51.65  Aligned_cols=110  Identities=19%  Similarity=0.224  Sum_probs=81.0

Q ss_pred             chhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHHHh
Q psy4740           4 PGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVFA   83 (147)
Q Consensus         4 ~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~   83 (147)
                      ...++..|+.+.|.+.+..+...+.++...+.  ++ ..-+...++.|...+..+|+..+...+..|  +.....|..-.
T Consensus       291 ig~~lm~~~~~~k~Laf~a~~~ill~~~~~l~--~g-~v~~~~l~~ig~F~simfPTIfslal~~l~--~~ts~~s~~l~  365 (422)
T COG0738         291 IGSALMSRIKPEKYLAFYALIAILLLLAVALI--GG-VVALYALFLIGLFNSIMFPTIFSLALKNLG--EHTSVGSGLLV  365 (422)
T ss_pred             HHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHh--cC-hHHHHHHHHHHHHhHHHHHHHHHHHHhccC--ccccccceeee
Confidence            44566678988898888887777777777766  55 344556678899999999999999999988  33344455555


Q ss_pred             hhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHH
Q psy4740          84 GNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVL  120 (147)
Q Consensus        84 ~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  120 (147)
                      ...+|+.+.|.+.|++.|.  .+-...+.....++.+
T Consensus       366 maivGGAiiP~l~G~i~d~--~g~~~~~~~~pllc~l  400 (422)
T COG0738         366 MAIVGGAIIPPLQGVIADM--FGIQLTFLIVPLLCYL  400 (422)
T ss_pred             eheecchHHHHHHHHHHHh--hhhHHHHHHHHHHHHH
Confidence            6678999999999999998  5666555544444433

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=97.74  E-value=0.001  Score=49.15  Aligned_cols=99  Identities=12%  Similarity=0.018  Sum_probs=68.5

Q ss_pred             cchhhhhhhhcchHHHHHHHHHHHHHHHHhhhccc---cc--------------------------HHHHHHHHHHHhhc
Q psy4740           3 IPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAAR---QS--------------------------ANWLIALRFFEGLG   53 (147)
Q Consensus         3 ~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~---~~--------------------------~~~~~~~~~l~g~~   53 (147)
                      ++.+++++|++|++++-+....+.....++++..-   +.                          .|...+..+...+.
T Consensus        62 ~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw  141 (472)
T TIGR00769        62 LIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAELW  141 (472)
T ss_pred             HHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHH
Confidence            46789999999999987766666665555443310   00                          11122222333333


Q ss_pred             cccCcc-cHHHHhhhhcCCcchhHHHHHHHhhhhhHHHHHHHHHHHHHh
Q psy4740          54 EGTTFP-ALNTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLK  101 (147)
Q Consensus        54 ~~~~~~-~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~  101 (147)
                      .....+ .-..+++|.++.++-.|..++...+.++|.++++.+...+.+
T Consensus       142 ~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~~  190 (472)
T TIGR00769       142 GSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFSK  190 (472)
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444 567889999999999999999999999999999998888763

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=97.68  E-value=0.00093  Score=48.22  Aligned_cols=133  Identities=14%  Similarity=0.082  Sum_probs=87.7

Q ss_pred             CcchhhhhhhhcchHHHH-HHHHHHHHHHHHhhhccc-ccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHH
Q psy4740           2 HIPGGLLAQKFGGKHTLG-FGILSTAIFTLLTPFAAR-QSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGS   79 (147)
Q Consensus         2 ~~~~g~l~d~~gr~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~   79 (147)
                      .|..|.++|+.|+||-.+ +...+..+..+...+..+ .+++..++...+..++..+.....++++.+..++++-++.-+
T Consensus        75 apiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vfyds~L~~~~~k~~~~riS~  154 (438)
T COG2270          75 APILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVFYDSMLPRLTTKDNMGRISG  154 (438)
T ss_pred             HHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhheehhhHhhhhcCccccCcccc
Confidence            367899999999665544 555555566666666643 344455566677888888888889999999999988888777


Q ss_pred             HHHhhhhhHHHHHHHHHHH-HHhh---------------cCCChhHHHHHHHHHHHHHHHHHHhhccCCCC
Q psy4740          80 FVFAGNQIGTVFSSFLSGF-LLKY---------------TDGDWPEIFYLFGILGVLWFVAWCFLCYNDPA  134 (147)
Q Consensus        80 ~~~~~~~~g~~~~~~~~~~-l~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (147)
                      .......+|+.+.-...-. +...               ++..-|..+.+.++--++..+..+...++.++
T Consensus       155 lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li~~iPm~~~v~~~~~  225 (438)
T COG2270         155 LGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGEDVRITGLLAALWWLLFALPMILNVHDAEK  225 (438)
T ss_pred             cccccccccchHHHHHHHHHHhcccccceeEEeeccCccccccchhHHHHHHHHHHHHHhHHHhccccccc
Confidence            7666666666554333211 1111               12456777777777777767776666666543

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=97.60  E-value=0.00067  Score=51.34  Aligned_cols=96  Identities=20%  Similarity=0.174  Sum_probs=68.6

Q ss_pred             cchhhhhhhhcch-HHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHH
Q psy4740           3 IPGGLLAQKFGGK-HTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFV   81 (147)
Q Consensus         3 ~~~g~l~d~~gr~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~   81 (147)
                      .+.|.+..+++|- +.++.+.++..+++-.++...++|....+...++.|++.|.........+.-..|++.-+.+.++.
T Consensus       367 ~i~g~l~~~ir~~Kw~li~~~~~~ta~~Gama~~~~~n~~~~i~~~~l~g~giG~~~~~~~~~~ql~~p~~~ig~a~gL~  446 (599)
T PF06609_consen  367 VILGLLFSKIRHIKWQLIFGSVLMTAFCGAMAAVRPDNKNAAIAFLVLAGFGIGGILVPAIVIAQLIVPDEDIGTATGLT  446 (599)
T ss_pred             HHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHccCCCcchHHHHHHHHHHhHHHHHHHHHHeeEeeeCchHHHHHHHHH
Confidence            3456677766644 444566666665555555554466666677778888888877766666666678999999999999


Q ss_pred             HhhhhhHHHHHHHHHHH
Q psy4740          82 FAGNQIGTVFSSFLSGF   98 (147)
Q Consensus        82 ~~~~~~g~~~~~~~~~~   98 (147)
                      .+...+|+.++..+...
T Consensus       447 ~s~R~~GGsIg~aIy~~  463 (599)
T PF06609_consen  447 GSIRSIGGSIGYAIYNA  463 (599)
T ss_pred             HHHHHHhhHHHHHHHHH
Confidence            99999988888877543

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=97.54  E-value=1.7e-05  Score=59.25  Aligned_cols=99  Identities=15%  Similarity=0.170  Sum_probs=3.0

Q ss_pred             cchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcc-----------c----------------------------------
Q psy4740           3 IPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAA-----------R----------------------------------   37 (147)
Q Consensus         3 ~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~-----------~----------------------------------   37 (147)
                      ++..++.+|..|-+.+-.+.++.++++++++.-+           .                                  
T Consensus        56 ~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~  135 (539)
T PF03137_consen   56 LFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSS  135 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhcCCCccccccccccccccccccccccccccccCccccccccccc
Confidence            4566777787777888888888888887764211           0                                  


Q ss_pred             ---ccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHHHhhhhhHHHHHHHHHHHHHh
Q psy4740          38 ---QSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLK  101 (147)
Q Consensus        38 ---~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~  101 (147)
                         ..+..+++++++.|+|....++...+|+-|..++++-+.++|+.+....+|..+|..+++.+.+
T Consensus       136 ~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~  202 (539)
T PF03137_consen  136 SLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGILYAMSILGPALGFLLGSFCLR  202 (539)
T ss_dssp             ----------------SSS------------------------------------------------
T ss_pred             cchHHHHHHHHHHHHHhccccCCccceeeeeccccccccCccchhhhhHHhhccHHHHHHHHHHHHh
Confidence               0135677899999999999999999999999999999999999999999999999999887664

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=97.51  E-value=0.0023  Score=46.21  Aligned_cols=118  Identities=12%  Similarity=0.023  Sum_probs=79.0

Q ss_pred             hhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHHHhh
Q psy4740           5 GGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVFAG   84 (147)
Q Consensus         5 ~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~   84 (147)
                      +.++.+|..-+.=+....++..++.++.++.  ++.+.-+++.++.+++.|........+.+ .+++    ...+-+.++
T Consensus        79 aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~--~~v~~~l~Gv~las~ssg~GE~tfL~lt~-~y~~----~~l~~wssG  151 (402)
T PF02487_consen   79 APFFIHRVPYWIRILICVALSAAGMLLVAFS--PSVWVRLLGVVLASLSSGLGEVTFLSLTH-FYGK----SSLSAWSSG  151 (402)
T ss_pred             hHhhhhhccchHHHHHHHHHHHHHHhheeec--cchhHHHHHHHHHhhhhhhhHHHHHHHHH-hcCc----cccccccCC
Confidence            4455666653333444556667777777777  78888888889999988888777766644 4543    346667777


Q ss_pred             hhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhcc
Q psy4740          85 NQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCY  130 (147)
Q Consensus        85 ~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (147)
                      .+.++.+|+..-..+.+ .+.+.|..+.....+.++..+..++..+
T Consensus       152 TG~aGl~Ga~~y~~lT~-~g~s~~~tll~~~~lp~~~~~~~f~~L~  196 (402)
T PF02487_consen  152 TGGAGLVGALYYLGLTT-LGLSPRTTLLIMLVLPAIFLLSYFFLLP  196 (402)
T ss_pred             cChhhHHHHHHHHHHHH-hCcCHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            77788888777665655 3456677777777666555555555544

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=97.42  E-value=0.0032  Score=46.87  Aligned_cols=104  Identities=11%  Similarity=0.071  Sum_probs=71.9

Q ss_pred             HHHHHHHHHHHHHHhhhcc-------cccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHHHhh-hhhHH
Q psy4740          18 LGFGILSTAIFTLLTPFAA-------RQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVFAG-NQIGT   89 (147)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~-~~~g~   89 (147)
                      +.++.++.+++...+....       ..+.++++...++.++|+-+..|...+.+++..|++.|++.+|.+... ..+|.
T Consensus       348 fa~g~~~~g~~f~~l~~~~~~~~~~~~~s~~wl~~~~~~~t~gEl~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~~  427 (493)
T PRK15462        348 FALGLGLMSAGFCILTLSARWSAMYGHSSLPLMVLGLAVMGFAELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIAN  427 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHHHHHHChHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH
Confidence            4566777777765553321       136778888899999999999999999999999999999999998663 35666


Q ss_pred             HHHHHHHHHHHhhc--C--------CChhHHHHHHHHHHHHH
Q psy4740          90 VFSSFLSGFLLKYT--D--------GDWPEIFYLFGILGVLW  121 (147)
Q Consensus        90 ~~~~~~~~~l~~~~--~--------~~~~~~~~~~~~~~~~~  121 (147)
                      .++..+.+......  +        ..+...|...+...++.
T Consensus       428 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~  469 (493)
T PRK15462        428 YLAGVIADQTSQASFDASGAINYSINAYIEVFDQITWGALAC  469 (493)
T ss_pred             HHHHHHHHHhccccCCccccccchhhhHHHHHHHHHHHHHHH
Confidence            66666555442110  0        13455666666555443

>KOG2816|consensus

Probab=97.41  E-value=0.0045  Score=45.72  Aligned_cols=95  Identities=28%  Similarity=0.414  Sum_probs=80.4

Q ss_pred             hhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHHHhhh
Q psy4740           6 GLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVFAGN   85 (147)
Q Consensus         6 g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~   85 (147)
                      ..+...+|-|+.+..|+....+.....+++  ++.++++...++.++ .....+...++++.+.+++++|+.+++.....
T Consensus       299 ~~l~~~l~~~~~i~lGl~~~~~~~~~~af~--~~~w~~~~~~v~~~~-~~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~  375 (463)
T KOG2816|consen  299 PLLSSILGEKRLISLGLLSEFLQLLLFAFA--TETWMMFAAGVVVAL-AGIVFPAIRAFASILVSPEEQGKVFGIISGIE  375 (463)
T ss_pred             HHHHHHHhhhhHhhHHHHHHHHHHHHHHHh--ccchhhhHHHHHHHh-hcchhHHHHhHHHhhcccccccchhhHHHHHH
Confidence            366778888888999999999999999988  777777777666555 45677888999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHhhc
Q psy4740          86 QIGTVFSSFLSGFLLKYT  103 (147)
Q Consensus        86 ~~g~~~~~~~~~~l~~~~  103 (147)
                      .+...++|.+-+.+...+
T Consensus       376 ~l~~~~~~~~~~~i~~~t  393 (463)
T KOG2816|consen  376 GLSGVVSPALYGNIFALT  393 (463)
T ss_pred             HHhhhhhHHHHHHHHHHH
Confidence            999999999988876654

>KOG2615|consensus

Probab=97.29  E-value=0.001  Score=47.56  Aligned_cols=85  Identities=16%  Similarity=0.315  Sum_probs=64.2

Q ss_pred             HHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHHHhhhhhHHHHHHHHH
Q psy4740          17 TLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLS   96 (147)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~   96 (147)
                      .+.....+..-..++....  +....++....+..+..+...+....++....|.++||...|+..+...++..+||+++
T Consensus       331 ~l~~~l~~~vP~~llls~~--~~~~~l~~~s~l~sf~~A~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~  408 (451)
T KOG2615|consen  331 VLLFSLLLIVPAFLLLSLA--RTPVVLYLGSTLKSFSTASVVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVS  408 (451)
T ss_pred             HHHHHHHHHHHHHHHHhcc--ccchhhhHHHHHHHHHHHHhhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhh
Confidence            3334444433333444444  55566777777777777777788888999999999999999999999999999999999


Q ss_pred             HHHHhhc
Q psy4740          97 GFLLKYT  103 (147)
Q Consensus        97 ~~l~~~~  103 (147)
                      |.+..+.
T Consensus       409 g~i~~Ws  415 (451)
T KOG2615|consen  409 GVIFSWS  415 (451)
T ss_pred             heeEEEe
Confidence            8886653

>KOG3098|consensus

Probab=97.22  E-value=0.0011  Score=48.75  Aligned_cols=92  Identities=16%  Similarity=0.141  Sum_probs=77.8

Q ss_pred             CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHH
Q psy4740           2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFV   81 (147)
Q Consensus         2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~   81 (147)
                      +++.+.+.|+.|+|+.+.++...+.........   .|-+.+++...+.|+|.+..+.....+++|..+++.+.+..++.
T Consensus        67 ~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~---~N~y~~yfssallG~Gaallw~GqG~ylt~~st~~tie~Nisi~  143 (461)
T KOG3098|consen   67 CLFAPSIVNFLGPKWALVIGATCYAAFPLGFLF---PNSYYLYFSSALLGFGAALLWTGQGGYLTSNSTRETIERNISIF  143 (461)
T ss_pred             HHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHh---cchHHHHHHHHHhhhhHHheecccceehhhcCChhhHHHHHHHH
Confidence            356788999999999999999998888777655   46678899999999999999999999999999999999999987


Q ss_pred             HhhhhhHHHHHHHHH
Q psy4740          82 FAGNQIGTVFSSFLS   96 (147)
Q Consensus        82 ~~~~~~g~~~~~~~~   96 (147)
                      -.....+.++|..+.
T Consensus       144 Wai~~~~li~Ggi~l  158 (461)
T KOG3098|consen  144 WAIGQSSLIIGGIIL  158 (461)
T ss_pred             HHHHHHHHHhhhHhh
Confidence            777777766665443

>PTZ00207 hypothetical protein; Provisional

Probab=97.20  E-value=0.0043  Score=47.16  Aligned_cols=105  Identities=14%  Similarity=0.121  Sum_probs=77.1

Q ss_pred             HHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHHHhhhhhHHHHH-HHHHHH
Q psy4740          20 FGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVFAGNQIGTVFS-SFLSGF   98 (147)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~-~~~~~~   98 (147)
                      +..+ ..++.++++...  ....+++.-++.|++.|..++.....++|+|. |+-|+..+......-+|..+- -.+.|.
T Consensus       435 ~~~~-~~~~~lll~~~~--p~~~L~~~~~lvg~~~G~~~~~~~~i~selFg-k~~g~~yN~~~~a~pigs~~~n~~l~G~  510 (591)
T PTZ00207        435 IPSV-CIITMLTLFLTL--PKAALPLPYFIAAFANGFMAATIALVTRTIFA-KDPAKHYNFCFLGSVLSAIFLNRLLYGE  510 (591)
T ss_pred             HHHH-HHHHHHHHHHHC--CccHhHHHHHHHHHHhhHhHHHHHHHHHHHhc-cchHHHhhHHhHHHHHHHHHHHHHHHHH
Confidence            3344 555555555542  22578899999999999999999999999999 999999998888888888665 556777


Q ss_pred             HHhhcC-----------CChhHHHHHHHHHHHHHHHHHHhh
Q psy4740          99 LLKYTD-----------GDWPEIFYLFGILGVLWFVAWCFL  128 (147)
Q Consensus        99 l~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~  128 (147)
                      +++...           .=++..|.+.+.+.+...+....+
T Consensus       511 ~Yd~ea~k~~~~~C~G~~C~~~~~~v~~~~~~~g~~~s~~l  551 (591)
T PTZ00207        511 WYTQQADKLGQDVCTERVCVVMPLAFLLGLSFLAFITSTYV  551 (591)
T ss_pred             HHHHHHhhCCCCeeCCceeeHhHHHHHHHHHHHHHHHHhhe
Confidence            776531           015778888888877766654443

>KOG1237|consensus

Probab=97.08  E-value=0.0057  Score=46.35  Aligned_cols=123  Identities=17%  Similarity=0.219  Sum_probs=89.4

Q ss_pred             cchhhhhhh-hcchHHHHHHHHHHHHHHHHhhhc---c---c-------c-------c---HHHHHHHHHHHhhccccCc
Q psy4740           3 IPGGLLAQK-FGGKHTLGFGILSTAIFTLLTPFA---A---R-------Q-------S---ANWLIALRFFEGLGEGTTF   58 (147)
Q Consensus         3 ~~~g~l~d~-~gr~~~~~~~~~~~~~~~~~~~~~---~---~-------~-------~---~~~~~~~~~l~g~~~~~~~   58 (147)
                      +..++++|. +||-+++.++.++..++..+....   .   +       .       +   ...++...-+..+|.|+.-
T Consensus        91 l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r  170 (571)
T KOG1237|consen   91 LLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIR  170 (571)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCC
Confidence            467899996 489999999888887775544322   0   0       0       1   2345556667778999999


Q ss_pred             ccHHHHhhhhcC---C-cc--hhHHHHHHHhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHh
Q psy4740          59 PALNTLLAQWVP---P-TE--RGKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCF  127 (147)
Q Consensus        59 ~~~~~~~~~~~~---~-~~--r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (147)
                      +....+-+|.++   + +.  +...++.++...+.|..++..+..+..+.  .+|...|.+..+...+.++..+.
T Consensus       171 ~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq~~--~~w~lgf~i~~~~~~lai~iF~~  243 (571)
T KOG1237|consen  171 PCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQDN--VGWKLGFGIPTVLNALAILIFLP  243 (571)
T ss_pred             CcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhhhhc--ccceeeccHHHHHHHHHHHHHHc
Confidence            999999999988   2 22  23677788888999999988888877766  78999888888877765554443

>KOG0637|consensus

Probab=96.98  E-value=0.0007  Score=49.33  Aligned_cols=98  Identities=18%  Similarity=0.188  Sum_probs=66.1

Q ss_pred             Ccchhhhhhh----hcchHHHH-HHHHHHHHHHHHhhhccc------c---------cHHHHHHHHHHHhhccccCcccH
Q psy4740           2 HIPGGLLAQK----FGGKHTLG-FGILSTAIFTLLTPFAAR------Q---------SANWLIALRFFEGLGEGTTFPAL   61 (147)
Q Consensus         2 ~~~~g~l~d~----~gr~~~~~-~~~~~~~~~~~~~~~~~~------~---------~~~~~~~~~~l~g~~~~~~~~~~   61 (147)
                      ||..|..+||    |||||-++ .+....+++.++.++++.      +         .....++..-+.=++.-......
T Consensus        84 QP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~  163 (498)
T KOG0637|consen   84 QPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPC  163 (498)
T ss_pred             cccccccccccccccccccchHHHhhHHHHHHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhH
Confidence            6788888885    78776655 456666666666655420      1         12233333333344454566778


Q ss_pred             HHHhhhhcCCcchhH-HHHHHHhhhhhHHHHHHHHHHHH
Q psy4740          62 NTLLAQWVPPTERGK-IGSFVFAGNQIGTVFSSFLSGFL   99 (147)
Q Consensus        62 ~~~~~~~~~~~~r~~-~~~~~~~~~~~g~~~~~~~~~~l   99 (147)
                      -+++.|....++|-+ +.+.+.....+|+.+|...++..
T Consensus       164 ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~y~  202 (498)
T KOG0637|consen  164 RALLADLARGDAKKTRANSVFSFFMAVGNVLGYALGSYL  202 (498)
T ss_pred             HHHHHHhccChhhhhccchhHHHHHHhcceeeeeccccc
Confidence            899999987776666 89999999999999998888743

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=96.97  E-value=0.0024  Score=46.79  Aligned_cols=83  Identities=18%  Similarity=0.241  Sum_probs=56.9

Q ss_pred             HHHhhccccCcccHHHHhhhhcCCcchhHHHHHHHhhhhhHHHHHHHHHHHHHhhcC------CChhHHHHHHHHHHHHH
Q psy4740          48 FFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLKYTD------GDWPEIFYLFGILGVLW  121 (147)
Q Consensus        48 ~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~------~~~~~~~~~~~~~~~~~  121 (147)
                      ++..+.....+-.....++|..|+..-|+.+++..+..|+|..++..++..+.+..+      .+-.+..++.....++ 
T Consensus       326 ~l~~~~~~i~~mP~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~vt~~~f~~l~~lili~~~~~ll-  404 (433)
T PF03092_consen  326 ILEEVIGMIAFMPSLVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFGVTRDDFSNLWLLILICSVIQLL-  404 (433)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHH-
Confidence            444444444556677889999999999999999999999999999999998887642      1123344444555533 


Q ss_pred             HHHHHhhccC
Q psy4740         122 FVAWCFLCYN  131 (147)
Q Consensus       122 ~~~~~~~~~~  131 (147)
                      .+....+.|+
T Consensus       405 ~l~ll~lLp~  414 (433)
T PF03092_consen  405 PLPLLFLLPP  414 (433)
T ss_pred             HHHHHHHcCC
Confidence            3333434454

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>KOG4332|consensus

Probab=96.85  E-value=0.0015  Score=45.00  Aligned_cols=113  Identities=19%  Similarity=0.140  Sum_probs=67.6

Q ss_pred             chhhhhhhhcchHHHHHHHHHHHHHHHHhhhc-ccccHHHHHHHHHHHhhccccCcccHHHH-hhhhcCCc-----chhH
Q psy4740           4 PGGLLAQKFGGKHTLGFGILSTAIFTLLTPFA-ARQSANWLIALRFFEGLGEGTTFPALNTL-LAQWVPPT-----ERGK   76 (147)
Q Consensus         4 ~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~g~~~~~~~~~~~~~-~~~~~~~~-----~r~~   76 (147)
                      +.|-++|+.|||+.-..    +++...++... +.+.+..++++|++-|+..+..++.-.++ +.|.-.++     .-..
T Consensus        91 ivgSLaDkqGRKracvt----ycitYiLsCiTKhSpqYkVLmVGR~LGGiaTsLLFSaFEsWliaEHnekr~FeqqWls~  166 (454)
T KOG4332|consen   91 IVGSLADKQGRKRACVT----YCITYILSCITKHSPQYKVLMVGRVLGGIATSLLFSAFESWLIAEHNEKRGFEQQWLSV  166 (454)
T ss_pred             HHHHHHhhhccccceee----ehHHHHHHHHhhcCCceEEEeehhhhhhHHHHHHHHHHHHHHHHHhhhccCChHhhhhH
Confidence            46789999999996443    44444444333 33678889999999999988888777664 56654221     1111


Q ss_pred             HHHH-HHhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHH
Q psy4740          77 IGSF-VFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVL  120 (147)
Q Consensus        77 ~~~~-~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  120 (147)
                      .++- ......+-.+++.+.+..+.+..+.|--.+|-..+.+..+
T Consensus       167 TFskA~ffgNglvAiiaGlfgn~lvd~~slGPVAPFdAAacfLai  211 (454)
T KOG4332|consen  167 TFSKAVFFGNGLVAIIAGLFGNLLVDTFSLGPVAPFDAAACFLAI  211 (454)
T ss_pred             HHHHHHHhhccHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHH
Confidence            2221 1233444455555666677776555555566555444443

>KOG2533|consensus

Probab=96.45  E-value=0.0054  Score=45.70  Aligned_cols=106  Identities=15%  Similarity=0.076  Sum_probs=50.2

Q ss_pred             cchhhhhhh----hcchHHHHHHHHHHHHHH-HHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchh-H
Q psy4740           3 IPGGLLAQK----FGGKHTLGFGILSTAIFT-LLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERG-K   76 (147)
Q Consensus         3 ~~~g~l~d~----~gr~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~-~   76 (147)
                      +..|.++||    ..+|........+..... ......  .+.......-+....+.....+......++....+.|. .
T Consensus       327 i~ag~lsdr~~~~~~~~~~~~~~~~~~~~~g~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~w~s~~~~g~~k~~~  404 (495)
T KOG2533|consen  327 ILAGYLSDRLKTIFARRLLFIVFLCLYAIIGAISLLAA--AVLPGAYGAFLIGPYGLIATAIIALSWTSANLAGNTKALT  404 (495)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhh--ccchHHhHHHHhcchhhHHHHHHHHhhccccccchHHhHH
Confidence            568999999    667766666555554444 333222  22222222222222233334445555566665554443 3


Q ss_pred             HHHHHHhhhhhHHHHHHHHHH-HHHhhcCCChhHHHH
Q psy4740          77 IGSFVFAGNQIGTVFSSFLSG-FLLKYTDGDWPEIFY  112 (147)
Q Consensus        77 ~~~~~~~~~~~g~~~~~~~~~-~l~~~~~~~~~~~~~  112 (147)
                      ..+......+.++.++|.+-. .....  ..|...|+
T Consensus       405 ~~~~~i~~~~s~~~~~~~~~~~~~ap~--y~~~~~f~  439 (495)
T KOG2533|consen  405 TVSAIIDGTGSAGAISGQLFRSLDAPR--YGWGAVFY  439 (495)
T ss_pred             HHhhhhcchhHHHHhhhhhcccccCcc--hhhhhHHH
Confidence            333444444444444443332 22222  35666663

>KOG3098|consensus

Probab=96.02  E-value=0.087  Score=39.03  Aligned_cols=84  Identities=20%  Similarity=0.233  Sum_probs=63.3

Q ss_pred             hhhhcchHHHHHHHHHHHHHHHHhhhccc----------------ccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCc
Q psy4740           9 AQKFGGKHTLGFGILSTAIFTLLTPFAAR----------------QSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPT   72 (147)
Q Consensus         9 ~d~~gr~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~   72 (147)
                      .+++||++.+..+..+..+.+++.-...+                +++....+.-++.|++.++.......++.+.. ++
T Consensus       306 ir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~~D~~~~t~~~~ii~~~~-~~  384 (461)
T KOG3098|consen  306 IRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGFGDACFNTQRYVIIALLY-PD  384 (461)
T ss_pred             hhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHHHHhhHHHHHHHHHHHHHHHHh-cC
Confidence            45689999999998888888877644311                23556777888999999988888888999888 67


Q ss_pred             chhHHHHHHHhhhhhHHHHHH
Q psy4740          73 ERGKIGSFVFAGNQIGTVFSS   93 (147)
Q Consensus        73 ~r~~~~~~~~~~~~~g~~~~~   93 (147)
                      +|..+.++.-.-..++..++-
T Consensus       385 ~~~~~fsi~kfyq~~~s~v~~  405 (461)
T KOG3098|consen  385 DRAQAFSLFKFYQSVASCVAF  405 (461)
T ss_pred             chHHHHHHHHHHHHHHHHHHh
Confidence            888888887666666655443

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=95.96  E-value=0.063  Score=39.49  Aligned_cols=53  Identities=6%  Similarity=0.093  Sum_probs=37.3

Q ss_pred             CCcchhHHHHHHHhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHH
Q psy4740          70 PPTERGKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVA  124 (147)
Q Consensus        70 ~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  124 (147)
                      +++...+..+...-.-.+..+++|++.|.+.+.  .+.+....+.+...++....
T Consensus       143 ~~~~La~~NA~mRRIDL~ckllaPl~vG~l~t~--~s~~~~~~~i~~~N~~S~~v  195 (432)
T PF06963_consen  143 DPGALARMNATMRRIDLFCKLLAPLFVGLLMTF--ASPVIAAIFIAGWNLASVFV  195 (432)
T ss_pred             ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--cCHHHHHHHHHHHHHHHHHH
Confidence            344555566666667778899999999999987  57777766666665554443

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=95.88  E-value=0.076  Score=38.63  Aligned_cols=62  Identities=24%  Similarity=0.321  Sum_probs=53.7

Q ss_pred             ccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHHHhhhhhHHHHHHHHHHHH
Q psy4740          38 QSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFL   99 (147)
Q Consensus        38 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l   99 (147)
                      ++.+...+..+..|+..|..+......+.|-.|+++|-..++.....-+.|..++..++-.+
T Consensus       333 psi~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~l  394 (402)
T PF02487_consen  333 PSIWIVFVLIFYEGLLGGASYVNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPL  394 (402)
T ss_pred             hHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            56777777888999999999999999999999999999999999998888888877766555

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=95.85  E-value=0.078  Score=39.43  Aligned_cols=91  Identities=16%  Similarity=0.227  Sum_probs=69.0

Q ss_pred             ccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHHHhhhhhHHHHHHHHHHH------HHhhcCCChhHHH
Q psy4740          38 QSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGF------LLKYTDGDWPEIF  111 (147)
Q Consensus        38 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~------l~~~~~~~~~~~~  111 (147)
                      .+.++++...+++++++=+..|...+.+....|+.-.+..++++......|..++..+.+.      ..+.  ......|
T Consensus       392 ~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~~~~~~~~~~~~--~~~~~~F  469 (498)
T COG3104         392 VSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAGLTAVTDPAYTA--FIEGRVF  469 (498)
T ss_pred             cCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceecccccccchhhhh--hhhhhhH
Confidence            3577888889999999999999999999999999999999999888888888777766663      1122  2445567


Q ss_pred             HHHHHHHHHHHHHHHhhcc
Q psy4740         112 YLFGILGVLWFVAWCFLCY  130 (147)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~  130 (147)
                      +..+....+.........|
T Consensus       470 ~~~g~v~i~~~~~~~~~~~  488 (498)
T COG3104         470 GTIGVVAIVIGILLLLLSP  488 (498)
T ss_pred             HHHHHHHHHHHHHHHHhhH
Confidence            7777776665555444433

>KOG2325|consensus

Probab=94.96  E-value=0.023  Score=42.23  Aligned_cols=86  Identities=14%  Similarity=0.198  Sum_probs=64.7

Q ss_pred             HHHHHH-HHHhhccccCcccHHHHhhhhcCCcchhHHHHHHHhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHH
Q psy4740          42 WLIALR-FFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVL  120 (147)
Q Consensus        42 ~~~~~~-~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  120 (147)
                      .+++.. ++.|.+.-.......++-+|...+++++...+.+......+..++|.+.......  .|.|+.+.+.....++
T Consensus       389 ~~l~~~i~~~g~~~P~~~~~~~tlySkiLgp~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~~--~g~~~v~~~~~~~~l~  466 (488)
T KOG2325|consen  389 LYLISFIVVFGIAFPFISTALDTLYSKILGPRDQGTMQGVFSISGSIARVVGPIFSTAIFTL--SGPRPVWIILLCLLLV  466 (488)
T ss_pred             hheeehhheeccccccccchHHHHHHHHhCCccccceeEEEEeccchhhhhhHHHHhhhHHh--cCccHHHHHHHHHHHH
Confidence            334443 4566666666667888999999999999999999999999999999999999888  6777776666666555


Q ss_pred             HHHHHHhhc
Q psy4740         121 WFVAWCFLC  129 (147)
Q Consensus       121 ~~~~~~~~~  129 (147)
                      ....+..+.
T Consensus       467 ~~~l~~~~~  475 (488)
T KOG2325|consen  467 VAALWIVFL  475 (488)
T ss_pred             HHHHHHHHH
Confidence            444444333

>KOG2563|consensus

Probab=94.73  E-value=0.035  Score=40.77  Aligned_cols=101  Identities=19%  Similarity=0.075  Sum_probs=63.0

Q ss_pred             Ccchhhhhhhhc-chHHHHHHHHHHHHHHHHhhhc--ccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHH
Q psy4740           2 HIPGGLLAQKFG-GKHTLGFGILSTAIFTLLTPFA--ARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIG   78 (147)
Q Consensus         2 ~~~~g~l~d~~g-r~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~   78 (147)
                      +...|.+.||.. -|.++........++.......  .....+.+...-.+.|.+....+|...-+-.|..-|..-+...
T Consensus       318 a~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~~~t~~~~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E~tSs  397 (480)
T KOG2563|consen  318 ALASGIIADKTKKFKLTTLVLYLFALVGTLMLLTCTLFLGDSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVAEGTSS  397 (480)
T ss_pred             HHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCCceEehhhhHHHHHHhhcCCCCcceeeeeeeccccCCcccc
Confidence            356789999986 4444444444444442222111  1122344556667788888888998888888875555555777


Q ss_pred             HHHHhhhhhHHHHHHHHHHHHHhh
Q psy4740          79 SFVFAGNQIGTVFSSFLSGFLLKY  102 (147)
Q Consensus        79 ~~~~~~~~~g~~~~~~~~~~l~~~  102 (147)
                      |+.+...++-+++-..+.+...+.
T Consensus       398 Gll~~~gq~f~~~~~~~~~~~~~~  421 (480)
T KOG2563|consen  398 GLLNLSGQIFGVILVFIMGILAED  421 (480)
T ss_pred             eeEEeehhHHHHHHHHHHHHHhhc
Confidence            777777776666666666666554

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=94.70  E-value=1  Score=33.94  Aligned_cols=41  Identities=17%  Similarity=0.254  Sum_probs=36.7

Q ss_pred             HHHHhhhhcCCcchhHHHHHHHhhhhhHHHHHHHHHHHHHh
Q psy4740          61 LNTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLK  101 (147)
Q Consensus        61 ~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~  101 (147)
                      -..+++|.++.++-.+..++...+.++|.+++..+...+.+
T Consensus       165 FW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~  205 (491)
T PF03219_consen  165 FWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS  205 (491)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46788999999999999999999999999999888887777

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>PF12832 MFS_1_like: MFS_1 like family

Probab=94.51  E-value=0.024  Score=31.20  Aligned_cols=23  Identities=35%  Similarity=0.455  Sum_probs=18.5

Q ss_pred             CcchhhhhhhhcchHHHHHHHHH
Q psy4740           2 HIPGGLLAQKFGGKHTLGFGILS   24 (147)
Q Consensus         2 ~~~~g~l~d~~gr~~~~~~~~~~   24 (147)
                      ++++|.++||+++++.++....+
T Consensus        52 ~pl~g~laDk~~~~~~~l~~~~~   74 (77)
T PF12832_consen   52 PPLWGFLADKFGKRKVILLGSLF   74 (77)
T ss_pred             HHHHHHHHHHHCccHHHHHHHHH
Confidence            57899999999998887765544

>PRK03612 spermidine synthase; Provisional

Probab=93.76  E-value=2  Score=32.71  Aligned_cols=55  Identities=25%  Similarity=0.330  Sum_probs=36.8

Q ss_pred             HHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHHHhhhhhHHHHHHHHHHHHHh
Q psy4740          46 LRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLK  101 (147)
Q Consensus        46 ~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~  101 (147)
                      ..++.++..|...|....+..+.. .++-++..|-.+....+|+++|.++.+.+.-
T Consensus       116 ~~~~~~~l~G~~~Pl~~~~~~~~~-~~~~g~~~g~ly~~ntlGa~~G~l~~~~vLl  170 (521)
T PRK03612        116 LVLLIGLLIGMEIPLLMRILQRIR-DQHLGHNVATVLAADYLGALVGGLAFPFLLL  170 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcc-ccchhhhhhhhHhHHhHHHHHHHHHHHHHHH
Confidence            334566677777776666555432 2234567788888888999999988876554

>KOG3810|consensus

Probab=93.19  E-value=0.086  Score=37.77  Aligned_cols=118  Identities=18%  Similarity=0.179  Sum_probs=75.9

Q ss_pred             hhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHHHhhhhh
Q psy4740           8 LAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVFAGNQI   87 (147)
Q Consensus         8 l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~   87 (147)
                      +.|-..-|+++++-.+.......+..+.  ++.+.+=+.-+..|...+. ..+..+++-+..+++++.+..+......-.
T Consensus        65 LTD~lrYKPvivlq~ls~v~~w~~lv~g--~sV~~mQvlE~FyG~~tAa-EIAYysYIYs~Vd~~~Yqrvt~y~RaA~L~  141 (433)
T KOG3810|consen   65 LTDYLRYKPVVVLQALSGVPVWIMLVFG--PSVKAMQVLEFFYGPATAA-EIAYYSYIYSKVDPEMYKRVTGYCRAAFLV  141 (433)
T ss_pred             HhhhhhcceeeeeeccchhHHHHHHHhc--CCchheeeehhhcChHHHH-HHhhhheeeeecCHHHHHHHHHHhHHHHHH
Confidence            4566666666666555555555555555  5555555555666665443 334567777778899999999998888888


Q ss_pred             HHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhh
Q psy4740          88 GTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFL  128 (147)
Q Consensus        88 g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (147)
                      |...+..++..+......++...-++......+......++
T Consensus       142 g~~~g~vlaQlLvs~~~~sy~~LN~ISL~~~~ia~~~A~fL  182 (433)
T KOG3810|consen  142 GKFVGSVLAQLLVSLETLSYTTLNYISLAEVTIAVLLALFL  182 (433)
T ss_pred             HhHHHhHHHHHHhhhcccchhhhchhhHHHHHHHHHHHhhC
Confidence            88888888888777644556655555555555544444433

>KOG3880|consensus

Probab=93.03  E-value=0.56  Score=33.33  Aligned_cols=119  Identities=14%  Similarity=0.160  Sum_probs=68.1

Q ss_pred             hhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHHHhhh
Q psy4740           6 GLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVFAGN   85 (147)
Q Consensus         6 g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~   85 (147)
                      ...-||+.-..=+.+..++.+.+.++.++.  ++.++-+.+..+..++.|.....-..+.+..-     ....+-+.++.
T Consensus        83 Pff~~rfpf~~Ri~~~v~~sa~s~~lVafs--~s~~~sL~GV~~aSissGlGEiTFL~lss~Y~-----~~~i~~WSSGT  155 (409)
T KOG3880|consen   83 PFFIHRFPFGFRIALVVLLSALSFFLVAFS--NSVPMSLLGVVFASISSGLGEITFLALSSRYP-----SIVIAGWSSGT  155 (409)
T ss_pred             hhhhhhcccchHHHHHHHHHhcceEEEEec--cchhHHHhhhhhhhhcCCcceeehhhhhccCC-----CceeccccCCC
Confidence            344555432222333455556666666666  77777888888888887777665555444322     12233344444


Q ss_pred             hhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhccC
Q psy4740          86 QIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYN  131 (147)
Q Consensus        86 ~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (147)
                      +-++.+|..--..+.+..+.+-|-...+...+.++.....++..++
T Consensus       156 GgAGliGa~SYa~lT~~~~~spk~Tlli~l~lP~lfa~~yf~lL~~  201 (409)
T KOG3880|consen  156 GGAGLIGASSYAFLTSWANLSPKSTLLIMLFLPALFAFAYFFLLKS  201 (409)
T ss_pred             CcchhhhhhHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHheeCC
Confidence            4455666555555555444567777777776666655555555543

>KOG3574|consensus

Probab=92.74  E-value=0.65  Score=34.02  Aligned_cols=92  Identities=12%  Similarity=0.099  Sum_probs=44.6

Q ss_pred             cchhhhhh-----hhcchHHHHH------HHHHHHHHHHHhhhcc----cccHHHHHHHHHHHhhccccCcccHHHHhhh
Q psy4740           3 IPGGLLAQ-----KFGGKHTLGF------GILSTAIFTLLTPFAA----RQSANWLIALRFFEGLGEGTTFPALNTLLAQ   67 (147)
Q Consensus         3 ~~~g~l~d-----~~gr~~~~~~------~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~   67 (147)
                      +.|..+.|     |+||||.-++      +.++..++...--...    .++.......-++.-+..+.=-.+.-.+.-.
T Consensus        81 llWaPiVDs~y~k~~GrrksWvvp~q~llG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALt  160 (510)
T KOG3574|consen   81 LLWAPIVDSVYSKRFGRRKSWVVPCQYLLGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALT  160 (510)
T ss_pred             HHHHhhhHHHHHHhhccccceeeehHHHHHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHH
Confidence            35677788     9999986432      2222222221110000    0122222222233334344344455566666


Q ss_pred             hcCCcchhHHHHHHHhhhhhHHHHHHH
Q psy4740          68 WVPPTERGKIGSFVFAGNQIGTVFSSF   94 (147)
Q Consensus        68 ~~~~~~r~~~~~~~~~~~~~g~~~~~~   94 (147)
                      +..+++-|.+......+.+.|..++..
T Consensus       161 mLs~e~lgyaST~q~Vg~~~GyfL~~~  187 (510)
T KOG3574|consen  161 MLSRENLGYASTCQSVGQTAGYFLGNV  187 (510)
T ss_pred             hcCHhhcCchhHHHHHHHhhhHHhhcc
Confidence            777777776666555555555555433

>KOG1330|consensus

Probab=91.69  E-value=0.36  Score=35.89  Aligned_cols=57  Identities=19%  Similarity=0.257  Sum_probs=38.2

Q ss_pred             HHHHHhh-ccccCcccHHHHhhhhcCCcchhHHHHHHHhhh-hhHHHHHHHHHHHHHhh
Q psy4740          46 LRFFEGL-GEGTTFPALNTLLAQWVPPTERGKIGSFVFAGN-QIGTVFSSFLSGFLLKY  102 (147)
Q Consensus        46 ~~~l~g~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~-~~g~~~~~~~~~~l~~~  102 (147)
                      ..++.|. ..-..+........|..|+++|..+.++-.... ..|..-+|.+.|.+.++
T Consensus       354 il~~~g~~~~~~~~a~n~~i~l~vV~p~~Rt~a~a~~~~~~h~fgd~~~p~ivGilsd~  412 (493)
T KOG1330|consen  354 ILFLVGETISWFNWATNNPIFLEVVPPSRRTTAYALDTVFEHIFGDAASPYIVGILSDK  412 (493)
T ss_pred             HHHHHHHHHHhcccccccceeeEecCcccccHHHHHHHHHHHHhccCCCcceehhHHHH
Confidence            3344444 334445666778899999999999999966544 44445556577777665

>COG3202 ATP/ADP translocase [Energy production and conversion]

Probab=91.43  E-value=4.7  Score=30.48  Aligned_cols=99  Identities=11%  Similarity=-0.008  Sum_probs=63.3

Q ss_pred             chhhhhhhhcchHHHHHHHHHHHHHHHHhhhcc-------ccc-----------------------HHHHHHHHHHHhhc
Q psy4740           4 PGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAA-------RQS-----------------------ANWLIALRFFEGLG   53 (147)
Q Consensus         4 ~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~-------~~~-----------------------~~~~~~~~~l~g~~   53 (147)
                      +..++.++..+.+++-.....+....+++++..       +++                       .|...+..++.-+.
T Consensus        81 iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~~~ili~~~Ws~s~~Yi~aELW  160 (509)
T COG3202          81 IYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFLKWFILIVGEWSYSLFYIMAELW  160 (509)
T ss_pred             HHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccceeeeEeecchHHHHHHHHHHHH
Confidence            456788888888887766666666555555431       111                       01111222222222


Q ss_pred             cccCcc-cHHHHhhhhcCCcchhHHHHHHHhhhhhHHHHHHHHHHHHHhh
Q psy4740          54 EGTTFP-ALNTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLKY  102 (147)
Q Consensus        54 ~~~~~~-~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~  102 (147)
                      .+.... .-..+++|.+..++-.|..++.+...+++..++..+...+..+
T Consensus       161 gslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k~  210 (509)
T COG3202         161 GSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSKH  210 (509)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            222222 3456789999999999999999999999998888888777664

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=90.86  E-value=1.3  Score=32.75  Aligned_cols=97  Identities=16%  Similarity=0.096  Sum_probs=61.7

Q ss_pred             cchhhhhhhhcchHHHHHHHHHHHHHHHHhhh---ccc-c----cHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcch
Q psy4740           3 IPGGLLAQKFGGKHTLGFGILSTAIFTLLTPF---AAR-Q----SANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTER   74 (147)
Q Consensus         3 ~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~---~~~-~----~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r   74 (147)
                      +...++.+|+|..+.=.++.........++..   .+. +    +...++.+-++.-+|.=+..-....++.|..|+++|
T Consensus       311 ~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~R  390 (432)
T PF06963_consen  311 WVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFSSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESER  390 (432)
T ss_pred             HHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHh
Confidence            45667889999888777665544433332211   111 1    223334444444444444556677888999999999


Q ss_pred             hHHHHHHHhhhhhHHHHHHHHHHHH
Q psy4740          75 GKIGSFVFAGNQIGTVFSSFLSGFL   99 (147)
Q Consensus        75 ~~~~~~~~~~~~~g~~~~~~~~~~l   99 (147)
                      |...+.-++..++-..+...+.-..
T Consensus       391 g~v~gvq~sl~~lf~ll~~~~~ii~  415 (432)
T PF06963_consen  391 GAVSGVQNSLQSLFELLSFVLTIIF  415 (432)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            9999998888888777765554443

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>KOG3880|consensus

Probab=89.80  E-value=2.7  Score=30.03  Aligned_cols=61  Identities=25%  Similarity=0.222  Sum_probs=49.0

Q ss_pred             ccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHHHhhhhhHHHHHHHHHHH
Q psy4740          38 QSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGF   98 (147)
Q Consensus        38 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~   98 (147)
                      ++++...+.-+.-|+-.|..+....--+.+-.++++|-.+++.....-++|..++..++-.
T Consensus       340 psi~ivf~lI~~EGLlGGasYVNTf~~i~~e~~pd~rEfamsavs~sDS~Gi~lA~~lalp  400 (409)
T KOG3880|consen  340 PSIWIVFALILFEGLLGGASYVNTFHNIHKETEPDVREFAMSAVSISDSIGIFLAGLLALP  400 (409)
T ss_pred             cHHHHHHHHHHHHhhcCchHHHHHHHHHhhcCCchHHHHhHhhheecchhhHHHHHHHhcc
Confidence            6777777777888998888888888778888899999999999888777777766655443

>KOG4332|consensus

Probab=88.73  E-value=4  Score=28.79  Aligned_cols=83  Identities=11%  Similarity=0.083  Sum_probs=53.0

Q ss_pred             HHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHHHhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHH
Q psy4740          40 ANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGV  119 (147)
Q Consensus        40 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  119 (147)
                      +..-+++..+.-.+.|..+|.....-++..|++.|...+.......++-.-++-+  ..-.+....+-|.+|.++.+...
T Consensus       344 ~~~s~i~F~~~E~cvGlfwPSimkmRsqyIPEearstimNfFRvPLnifvClvLy--nlh~~~~p~~tr~mf~icS~~~~  421 (454)
T KOG4332|consen  344 PSESLIGFCLFEACVGLFWPSIMKMRSQYIPEEARSTIMNFFRVPLNIFVCLVLY--NLHVDAFPTTTRNMFGICSAFLF  421 (454)
T ss_pred             chHHHHHHHHHHHHHhhcchHHHHHHHhhCCHHHHhhhhhheechhhHhhhhhhe--ecccccCccccchhhhhhHHHHH
Confidence            3344555566667788899999999999999999999998876654433222210  00011112355678888887776


Q ss_pred             HHHHH
Q psy4740         120 LWFVA  124 (147)
Q Consensus       120 ~~~~~  124 (147)
                      +..+.
T Consensus       422 ~a~i~  426 (454)
T KOG4332|consen  422 VASIL  426 (454)
T ss_pred             HHHHH
Confidence            65444

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=88.42  E-value=9.5  Score=29.13  Aligned_cols=41  Identities=17%  Similarity=0.126  Sum_probs=24.6

Q ss_pred             ccHHHHhhhhcCCcchhHHHHHHHhhhhhHHHHHHHHHHHH
Q psy4740          59 PALNTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFL   99 (147)
Q Consensus        59 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l   99 (147)
                      .++-.+.-.+.++++++.+-.-...+.+.|..++..+.-.+
T Consensus       137 IAVDGWALT~Ls~~n~~~ASTcqtvG~~~Gyfls~tvFlal  177 (544)
T PF13000_consen  137 IAVDGWALTMLSPENVGYASTCQTVGQTAGYFLSFTVFLAL  177 (544)
T ss_pred             ceeehhhhhhcChhhcchHHHHHHhHhhhhHHHHHHHHHhh
Confidence            34445555666778887776666666666666655444333

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

>KOG0637|consensus

Probab=85.16  E-value=0.49  Score=35.18  Aligned_cols=99  Identities=15%  Similarity=0.046  Sum_probs=53.3

Q ss_pred             chhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHH-------------------
Q psy4740           4 PGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTL-------------------   64 (147)
Q Consensus         4 ~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~-------------------   64 (147)
                      ..-++.||+|-|+.+..+...+.++..+.+..  .+......-+...|+-.+.........                   
T Consensus       351 ~~~~l~~~~g~r~~y~~~~~~f~~~~~~~gl~--~~~~~~~~~~~~~G~~~~~~~~~p~~l~~~y~~~g~~~a~t~~~pf  428 (498)
T KOG0637|consen  351 LVEKLSRKFGTRKRYWGGVNAFGLATGLAGLV--LNTYVVLSHRSTAGILSSPLLTVPYGALALYAILGIPLAITFSIPF  428 (498)
T ss_pred             HHHHHHHhcCcceEEeehhHHHHHHHHHHhhh--hhHHHHHHHHhhcceeecchhcccHHHHHHHHHhCCcccccccccc
Confidence            44678899996666665555455555555544  444444444445554333332222222                   


Q ss_pred             --hhhhcCCcc--hhHHHHHHHhhhhhHHHHHHHHHHHHHhhcC
Q psy4740          65 --LAQWVPPTE--RGKIGSFVFAGNQIGTVFSSFLSGFLLKYTD  104 (147)
Q Consensus        65 --~~~~~~~~~--r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~  104 (147)
                        .+....+..  +|...++.+....+..++.....|.+.+..+
T Consensus       429 ~~~s~~~~~sg~g~G~~~gvln~~I~ipQvivs~~~Gp~~~~~G  472 (498)
T KOG0637|consen  429 ALASIEIGNSGLGQGLDLGVLNCAIVIPQVLVSLGLGPLDQLFG  472 (498)
T ss_pred             ccccccccCccCCCCceeeeeeeeeeehhheeeccccchhhhcC
Confidence              221122222  3455556777777777777766777777654

>KOG1237|consensus

Probab=82.51  E-value=8.1  Score=29.88  Aligned_cols=65  Identities=20%  Similarity=0.176  Sum_probs=54.5

Q ss_pred             cHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHHHhhhhhHHHHHHHHHHHHHhhc
Q psy4740          39 SANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLKYT  103 (147)
Q Consensus        39 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~  103 (147)
                      +..|.+==.++.|++.........-+.-+-+|++-|..+.++......+|..+...+.......+
T Consensus       457 Si~W~iPQyvLig~~Evf~~vg~lEFfY~qaP~sMkS~~~al~l~t~a~G~~lss~Lv~~v~~~t  521 (571)
T KOG1237|consen  457 SILWQIPQYVLLGAGEVFTSVGGLEFFYSQAPESMKSVATALWLLTVAVGNYLSSVLVSLVQFST  521 (571)
T ss_pred             eHHHHHHHHHHHHHHHHHHhhhhHHHhHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            34445555588999999999988889999999999999999999999999999988887766654

>KOG3626|consensus

Probab=81.35  E-value=5.1  Score=31.85  Aligned_cols=64  Identities=17%  Similarity=0.137  Sum_probs=44.7

Q ss_pred             HHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHHHh-hhhhHHHHHHHHHHHHHhhc
Q psy4740          40 ANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVFA-GNQIGTVFSSFLSGFLLKYT  103 (147)
Q Consensus        40 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~-~~~~g~~~~~~~~~~l~~~~  103 (147)
                      +..+++..++..+..+...+....++-...++++|..++|+..+ ..-+|.+=+|.+.|+++|.+
T Consensus       586 ~~~Fl~~~~~~sf~~~~~~~p~~~i~LR~V~~e~ks~AlG~~~~~irllg~IPsPIifG~~ID~t  650 (735)
T KOG3626|consen  586 FLIFLALFAIGSFIGALGAVPGMLIVLRCVPPEEKSFALGFQWMLIRLLGFIPSPIIFGAVIDTT  650 (735)
T ss_pred             hHHHHHHHHHHHHHHHhccCcceEEEEEccCchhchhhhHHHHHHHHHHhcCCchHhhhhhHhhH
Confidence            33444444444444444445566667778899999999999665 66678888999999998853

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	147
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	6e-26
2cfq_A	417	Lactose permease; transport, transport mechanism,	9e-05
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	1e-04

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Length = 451

 Score =  100 bits (251), Expect = 6e-26
 Identities = 27/146 (18%), Positives = 48/146 (32%), Gaps = 3/146 (2%)

Query: 3   IPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFA--ARQSANWLIALRFFEGLGEGTTFPA 60
              G ++ +   +  L  G++  A   L   F   A  S   +  L F  G  +G  +P 
Sbjct: 80  FIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPP 139

Query: 61  LNTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVL 120
               +  W    ERG I S     + +G      L    + + +  W    Y+     +L
Sbjct: 140 CGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFND-WHAALYMPAFCAIL 198

Query: 121 WFVAWCFLCYNDPASHPYISQREKEY 146
             +    +  + P S       E + 
Sbjct: 199 VALFAFAMMRDTPQSCGLPPIEEYKN 224

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* Length = 417

 Score = 40.3 bits (94), Expect = 9e-05
 Identities = 20/128 (15%), Positives = 43/128 (33%), Gaps = 5/128 (3%)

Query: 6   GLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLL 65
            L+  + GGK+ L       ++  + + FA   SA  ++ L+                 +
Sbjct: 280 PLIINRIGGKNALLLAGTIMSVRIIGSSFAT--SALEVVILKTLHMFEVPFLLVGCFKYI 337

Query: 66  AQWVPPTERGKIGSFVFA-GNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVA 124
                      I    F    Q+  +F S L+G +  Y    +   + + G++ + + + 
Sbjct: 338 TSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNM--YESIGFQGAYLVLGLVALGFTLI 395

Query: 125 WCFLCYND 132
             F     
Sbjct: 396 SVFTLSGP 403

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} Length = 375

 Score = 39.5 bits (93), Expect = 1e-04
 Identities = 22/124 (17%), Positives = 43/124 (34%), Gaps = 5/124 (4%)

Query: 6   GLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLL 65
           G ++ + G +  +  G+    + TL+       S   LIA    +G+G G       TL 
Sbjct: 56  GPISDRVGRRPVILVGMSIFMLATLVAVTT--SSLTVLIAASAMQGMGTGVGGVMARTLP 113

Query: 66  AQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVL-WFVA 124
                 T+     S +  G  +  + +  + G L      +W   +    +L     F  
Sbjct: 114 RDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMW--NWRACYLFLLVLCAGVTFSM 171

Query: 125 WCFL 128
             ++
Sbjct: 172 ARWM 175

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	147
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.86
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.83
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.82
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.81
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.79
2xut_A	524	Proton/peptide symporter family protein; transport	99.76
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.6
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.53
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.45
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.44
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.29
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.29
2xut_A	524	Proton/peptide symporter family protein; transport	99.19
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	98.65

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.86  E-value=1.2e-21  Score=139.55  Aligned_cols=130  Identities=19%  Similarity=0.300  Sum_probs=117.5

Q ss_pred             CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhh----cccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHH
Q psy4740           2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPF----AARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKI   77 (147)
Q Consensus         2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~   77 (147)
                      ++++|+++||+|||+++.++.++.+++.+++++    .  ++++.+++.|++.|++.+...+...+++.|++|+++|++.
T Consensus        79 ~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~  156 (451)
T 1pw4_A           79 KFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWAT--SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGI  156 (451)
T ss_dssp             HHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHH--SSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHH
T ss_pred             HHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcc--ccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHH
Confidence            468899999999999999999999999999988    7  8889999999999999999999999999999999999999


Q ss_pred             HHHHHhhhhhHHHHHHHHHHHHHhhcCCC-hhHHHHHHHHHHHHHHHHHHhhccCCCCC
Q psy4740          78 GSFVFAGNQIGTVFSSFLSGFLLKYTDGD-WPEIFYLFGILGVLWFVAWCFLCYNDPAS  135 (147)
Q Consensus        78 ~~~~~~~~~~g~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (147)
                      +++.+...++|..++|.+++.+.+.  .+ ||+.|++.+++.++..+...+..||+|++
T Consensus       157 ~~~~~~~~~~g~~~g~~~~~~l~~~--~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~  213 (451)
T 1pw4_A          157 VSVWNCAHNVGGGIPPLLFLLGMAW--FNDWHAALYMPAFCAILVALFAFAMMRDTPQS  213 (451)
T ss_dssp             HHHHHHHHHHHHTSHHHHHHHHHHH--TCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH--hccHHHHHHHHHHHHHHHHHHHHhhccCCHhh
Confidence            9999999999999999999998877  67 99999999888877666666677765543

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.83  E-value=6.2e-20  Score=130.33  Aligned_cols=125  Identities=15%  Similarity=0.124  Sum_probs=108.5

Q ss_pred             CCcchhhhhhhhcchHHHHHHHHHHHHHHHHh---hhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHH
Q psy4740           1 MHIPGGLLAQKFGGKHTLGFGILSTAIFTLLT---PFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKI   77 (147)
Q Consensus         1 ~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~   77 (147)
                      +++++|+++||+|||+++.++.++.+++.+++   ...  ++++.+++.|++.|++.+...+....+++|++|+++|++.
T Consensus        77 ~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~  154 (438)
T 3o7q_A           77 IPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEI--MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFR  154 (438)
T ss_dssp             THHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHH
T ss_pred             HHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhcccc--ccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHH
Confidence            35789999999999999999999999999988   666  8999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhhhHHHHHHHHHHHHHhhcCCC------------------------hhHHHHHHHHHHHHHHHHHHh
Q psy4740          78 GSFVFAGNQIGTVFSSFLSGFLLKYTDGD------------------------WPEIFYLFGILGVLWFVAWCF  127 (147)
Q Consensus        78 ~~~~~~~~~~g~~~~~~~~~~l~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~  127 (147)
                      +++.+...++|..++|.+++.+.......                        ||+.|++.+....+..+...+
T Consensus       155 ~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~  228 (438)
T 3o7q_A          155 LNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIML  228 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999988332222                        999998877776655444433

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.82  E-value=6.5e-21  Score=133.23  Aligned_cols=129  Identities=16%  Similarity=0.203  Sum_probs=115.7

Q ss_pred             CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHH
Q psy4740           2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFV   81 (147)
Q Consensus         2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~   81 (147)
                      +++.|+++||+|||+++..+.++..++.......  ++++.+++.|++.|++.+...+....++.|.+|+++|++.++..
T Consensus        52 ~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (375)
T 2gfp_A           52 QLFYGPISDRVGRRPVILVGMSIFMLATLVAVTT--SSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLL  129 (375)
T ss_dssp             HTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHH
T ss_pred             HHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHH
Confidence            5789999999999999999999999999998888  88999999999999999999999999999999999999999999


Q ss_pred             HhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhccCCCC
Q psy4740          82 FAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPA  134 (147)
Q Consensus        82 ~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (147)
                      +....+|..++|.+++.+.+.  .+||+.|++.++..++..+...+..||+++
T Consensus       130 ~~~~~~g~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (375)
T 2gfp_A          130 NMGILVSPLLAPLIGGLLDTM--WNWRACYLFLLVLCAGVTFSMARWMPETRP  180 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHSSCH--HHHHHHHHHHHHHHHHHHCCCCCSSCCCST
T ss_pred             HHHHHHHHHhhHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHHHHHHCcccCC
Confidence            999999999999999999877  689999998888877665545555666543

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.81  E-value=1.2e-19  Score=130.73  Aligned_cols=126  Identities=17%  Similarity=0.217  Sum_probs=111.4

Q ss_pred             Ccchhhhhhh-hcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcc--hhHHH
Q psy4740           2 HIPGGLLAQK-FGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTE--RGKIG   78 (147)
Q Consensus         2 ~~~~g~l~d~-~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~--r~~~~   78 (147)
                      +++.|+++|| +|||+++..+.++.+++.+++...  ++++.+++.|++.|++.+...+....+++|++|+++  |+.++
T Consensus        71 ~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  148 (491)
T 4aps_A           71 GTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALP--FGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGF  148 (491)
T ss_dssp             HHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSC--CSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHH
T ss_pred             HHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeee
Confidence            5688999999 899999999999999999998888  889999999999999999999999999999999988  77788


Q ss_pred             HHHHhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhccC
Q psy4740          79 SFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYN  131 (147)
Q Consensus        79 ~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (147)
                      +.++...++|..++|.+++.+.+.  .+|++.|++.++..++..+...+..++
T Consensus       149 ~~~~~~~~~g~~~~~~~~~~l~~~--~g~~~~f~~~~~~~~~~~~~~~~~~~~  199 (491)
T 4aps_A          149 SIFVFGINLGAFIAPLIVGAAQEA--AGYHVAFSLAAIGMFIGLLVYYFGGKK  199 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH--SCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence            889999999999999999999988  799999999877776655555444443

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.79  E-value=1e-19  Score=131.03  Aligned_cols=132  Identities=20%  Similarity=0.300  Sum_probs=108.7

Q ss_pred             CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcc----------------cccHHHHHHHHHHHhhccccCcccHHHHh
Q psy4740           2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAA----------------RQSANWLIALRFFEGLGEGTTFPALNTLL   65 (147)
Q Consensus         2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~   65 (147)
                      ++++|+++||+|||+++.++.++..++.+++++..                .+++..+++.|++.|++.|...+....++
T Consensus        72 ~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i  151 (491)
T 4gc0_A           72 GALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYI  151 (491)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56789999999999999999999999999887421                27899999999999999999999999999


Q ss_pred             hhhcCCcchhHHHHHHHhhhhhHHHHHHHHHHHHHhhcC------CChhHHHHHHHHHHHHHHHHHHhhccCCCC
Q psy4740          66 AQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLKYTD------GDWPEIFYLFGILGVLWFVAWCFLCYNDPA  134 (147)
Q Consensus        66 ~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (147)
                      +|..|+++|++..+..+.....|..+++.++.......+      ..||..+.+..+..++ .+...+..||+|+
T Consensus       152 ~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~peSp~  225 (491)
T 4gc0_A          152 AELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALL-FLMLLYTVPESPR  225 (491)
T ss_dssp             HTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHH-HHHHGGGSCCCHH
T ss_pred             HhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhh-hhhhhhcCCCChH
Confidence            999999999999999999999999999888877655321      3577777766666655 3444556677653

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.76  E-value=5.4e-18  Score=123.07  Aligned_cols=122  Identities=19%  Similarity=0.237  Sum_probs=107.9

Q ss_pred             Ccchhhhhhhh-cchHHHHHHHHHHHHHHHHhhhcccc-cHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHH
Q psy4740           2 HIPGGLLAQKF-GGKHTLGFGILSTAIFTLLTPFAARQ-SANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGS   79 (147)
Q Consensus         2 ~~~~g~l~d~~-gr~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~   79 (147)
                      +++.|+++||+ |||+++..+.++.+++.+++...  + +++.+++.|++.|++.+...+...+++.|.+|+++|++..+
T Consensus        71 ~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~  148 (524)
T 2xut_A           71 PLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIF--EHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQK  148 (524)
T ss_dssp             HHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHT--SSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHH
T ss_pred             HHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHh--cccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHH
Confidence            56889999999 99999999999999999988887  7 89999999999999999999999999999999999987666


Q ss_pred             H---HHhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHh
Q psy4740          80 F---VFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCF  127 (147)
Q Consensus        80 ~---~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (147)
                      .   .+...++|..++|.+++.+.+.  .+|++.|++.++..++..+...+
T Consensus       149 ~~~~~~~~~~~g~~~g~~~~~~l~~~--~g~~~~f~~~~~~~~~~~~~~~~  197 (524)
T 2xut_A          149 AFDMFYFTINFGSFFASLSMPLLLKN--FGAAVAFGIPGVLMFVATVFFWL  197 (524)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSTHHHHT--SCHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcc--ccHHHHHHHHHHHHHHHHHHHHH
Confidence            6   8889999999999999999887  69999999988877665554443

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.60  E-value=2.5e-15  Score=106.67  Aligned_cols=128  Identities=14%  Similarity=0.137  Sum_probs=101.1

Q ss_pred             cchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHH-H
Q psy4740           3 IPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSF-V   81 (147)
Q Consensus         3 ~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~   81 (147)
                      ++.|+++||+|||+.+..+..+.++........  ++.+.+++..++.+++.+...+....+++|.+|++.|+++.+. +
T Consensus       277 ~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~  354 (417)
T 2cfq_A          277 FFAPLIINRIGGKNALLLAGTIMSVRIIGSSFA--TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCF  354 (417)
T ss_dssp             HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTC--CSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
Confidence            567899999999999988888877776666555  5666666666667766655556667899999999999999999 5


Q ss_pred             HhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhccCCCC
Q psy4740          82 FAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPA  134 (147)
Q Consensus        82 ~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (147)
                      +....+|..++|.+.+.+.+.  .++...|.+.+++.++..+..+...+|+++
T Consensus       355 ~~~~~lg~~~gp~l~G~l~~~--~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~  405 (417)
T 2cfq_A          355 CFFKQLAMIFMSVLAGNMYES--IGFQGAYLVLGLVALGFTLISVFTLSGPGP  405 (417)
T ss_dssp             TTTHHHHHHHHTHHHHTHHHH--SHHHHHHHHHHHHHHHHHHHHTTSSCCSCT
T ss_pred             HHHHhHHHHHhhhhHHHHHHh--cCcHHHHHHHHHHHHHHHHHHHhhhcCCCc
Confidence            888889999999999999887  678888888888777766665555555433

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.53  E-value=1.5e-14  Score=102.90  Aligned_cols=126  Identities=13%  Similarity=0.150  Sum_probs=103.4

Q ss_pred             Ccchhhhhhhh--cchHHHHHHHHHHH-HHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHH
Q psy4740           2 HIPGGLLAQKF--GGKHTLGFGILSTA-IFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIG   78 (147)
Q Consensus         2 ~~~~g~l~d~~--gr~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~   78 (147)
                      .++.|++.||+  |||+.+..+..+.. ++..........+.+...+..++.|++.+...+....++.|.+|+++|+++.
T Consensus       305 ~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~  384 (451)
T 1pw4_A          305 TLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAA  384 (451)
T ss_dssp             HHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHH
T ss_pred             HHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHH
Confidence            35689999999  99999888777766 5555555543236677777888889888888888889999999999999999


Q ss_pred             HHHHhhhhh-HHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhc
Q psy4740          79 SFVFAGNQI-GTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLC  129 (147)
Q Consensus        79 ~~~~~~~~~-g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (147)
                      ++.+...++ |..++|.+.+.+.+.  .+|+..|++.+++.++..+...+..
T Consensus       385 ~~~~~~~~~~g~~~~~~~~g~l~~~--~g~~~~~~~~~~~~~~~~~~~~~~~  434 (451)
T 1pw4_A          385 GFTGLFGYLGGSVAASAIVGYTVDF--FGWDGGFMVMIGGSILAVILLIVVM  434 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHS--SCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh--cCcHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999 999999999999998  6899999988888777665555443

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.45  E-value=8.4e-13  Score=95.00  Aligned_cols=134  Identities=19%  Similarity=0.139  Sum_probs=93.1

Q ss_pred             cchhhhhhhhcchHHHHHHHHHHHHHHHHhhhc--ccccHHHHHHHHHHH-hhccccCcccHHHHhhhhcCCcchhHHHH
Q psy4740           3 IPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFA--ARQSANWLIALRFFE-GLGEGTTFPALNTLLAQWVPPTERGKIGS   79 (147)
Q Consensus         3 ~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~-g~~~~~~~~~~~~~~~~~~~~~~r~~~~~   79 (147)
                      ++.+++.||+|||+.++.+.....++.+..+..  ...+....++...+. ........+....+.+|.+|++.|+++++
T Consensus       330 ~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g  409 (491)
T 4gc0_A          330 VLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALA  409 (491)
T ss_dssp             HHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHH
T ss_pred             HHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHH
Confidence            467889999999999998887777766655433  112222222222222 22222334566789999999999999999


Q ss_pred             HHHhhhhhHHHHHHHHHHHHHhhc----CCChhHHHHHHHHHHHHHHHHHHhhccCCCCCC
Q psy4740          80 FVFAGNQIGTVFSSFLSGFLLKYT----DGDWPEIFYLFGILGVLWFVAWCFLCYNDPASH  136 (147)
Q Consensus        80 ~~~~~~~~g~~~~~~~~~~l~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (147)
                      +.+....++..+++.+...+.+..    ..++...|++.+.+.++..+..+++.||++.++
T Consensus       410 ~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~t  470 (491)
T 4gc0_A          410 IAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKT  470 (491)
T ss_dssp             HHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCCCCC
Confidence            999999999988887766554321    124556788888888888888888899987654

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.44  E-value=2.2e-13  Score=98.12  Aligned_cols=128  Identities=17%  Similarity=0.191  Sum_probs=95.4

Q ss_pred             cchhhhhhhhcchHHHH-----HHHHHHHHHHHHhhhcc-------cccHHHHHHHHHHHhhccccCcccHHHHhhhhcC
Q psy4740           3 IPGGLLAQKFGGKHTLG-----FGILSTAIFTLLTPFAA-------RQSANWLIALRFFEGLGEGTTFPALNTLLAQWVP   70 (147)
Q Consensus         3 ~~~g~l~d~~gr~~~~~-----~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~   70 (147)
                      ++.+++.||+|||+...     .+.++.+++........       ..+.+...+..++.|++.+...+....++.|.+|
T Consensus       337 ~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p  416 (491)
T 4aps_A          337 PFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAP  416 (491)
T ss_dssp             HHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCC
Confidence            46789999999886544     66666666665554431       1256677788889999999989999999999999


Q ss_pred             CcchhHHHHHHHhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhccCCC
Q psy4740          71 PTERGKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDP  133 (147)
Q Consensus        71 ~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (147)
                      +++|+++.++.+...++|..+++.+.+.+.+.   ++...|.+.+...++..+..++..++.+
T Consensus       417 ~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~  476 (491)
T 4aps_A          417 KAFNSQMMSMWFLSSSVGSALNAQLVTLYNAK---SEVAYFSYFGLGSVVLGIVLVFLSKRIQ  476 (491)
T ss_dssp             TTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGS---STTHHHHHTHHHHHHHHHHHHHC-----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999998887655   6677788777777766666555555443

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.29  E-value=1e-11  Score=88.07  Aligned_cols=112  Identities=16%  Similarity=0.136  Sum_probs=89.6

Q ss_pred             CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHH
Q psy4740           2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFV   81 (147)
Q Consensus         2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~   81 (147)
                      .++.|+++||+|||+.+..+.++..++.+.....  ++.... +..++.|++.+..++....+..|.+|++ ++.+.++.
T Consensus       312 ~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  387 (438)
T 3o7q_A          312 RFTGTWLISRFAPHKVLAAYALIAMALCLISAFA--GGHVGL-IALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFI  387 (438)
T ss_dssp             HHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC--CHHHHH-HHHHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHH
T ss_pred             HHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHc--CCcHHH-HHHHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHH
Confidence            3578999999999999999988888888777766  554443 3447888888888898999989999866 88888877


Q ss_pred             HhhhhhHHHHHHHHHHHHHhhcCCC-hhHHHHHHHHHHHH
Q psy4740          82 FAGNQIGTVFSSFLSGFLLKYTDGD-WPEIFYLFGILGVL  120 (147)
Q Consensus        82 ~~~~~~g~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~  120 (147)
                      . ...+|..++|.+.+.+.+.  .+ ++..|++.++..++
T Consensus       388 ~-~~~~g~~~~~~~~g~l~~~--~g~~~~~~~~~~~~~~~  424 (438)
T 3o7q_A          388 V-MTIIGGGIVTPVMGFVSDA--AGNIPTAELIPALCFAV  424 (438)
T ss_dssp             H-HTTHHHHHHHHHHHHHHHH--HTSSGGGGHHHHHHHHH
T ss_pred             H-HHHHHHHHHHHHHHHHHHH--hcchHHHHHHHHHHHHH
Confidence            6 5679999999999999988  45 88888876555444

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.29  E-value=6.4e-14  Score=99.42  Aligned_cols=118  Identities=14%  Similarity=0.086  Sum_probs=75.4

Q ss_pred             CcchhhhhhhhcchHHHHHHHHHHHHHHHHh---hhcccccH-HHHHHHHHHHhhccccCcccHHHHhhhhcCC--cchh
Q psy4740           2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLT---PFAARQSA-NWLIALRFFEGLGEGTTFPALNTLLAQWVPP--TERG   75 (147)
Q Consensus         2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~--~~r~   75 (147)
                      ++++|+++||+|||+++..+..+..+.....   ...  ... ......+.+.+...+..++.......++.++  ++|+
T Consensus        60 ~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  137 (417)
T 2cfq_A           60 QPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFG--PLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSN  137 (417)
T ss_dssp             HHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHH--HHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcc
Confidence            5789999999999999998877665422111   111  111 0123344555555444443334444444433  4567


Q ss_pred             HHHHHHHhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHH
Q psy4740          76 KIGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVA  124 (147)
Q Consensus        76 ~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  124 (147)
                      ...+......++|..++|.+++.+.+.   +|+..|++.++..++..+.
T Consensus       138 ~~~g~~~~~~~~g~~~~~~l~~~l~~~---~~~~~f~~~~~~~~~~~~~  183 (417)
T 2cfq_A          138 FEFGRARMFGCVGWALGASIVGIMFTI---NNQFVFWLGSGCALILAVL  183 (417)
T ss_dssp             CCHHHHSSSTTTHHHHHHHHHHHHHHH---CSHHHHTTTTTTTTTHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHh---chhHHHHHHHHHHHHHHHH
Confidence            777888888899999999999998876   7999998776665443333

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.19  E-value=2.6e-11  Score=88.01  Aligned_cols=117  Identities=15%  Similarity=0.140  Sum_probs=83.7

Q ss_pred             HHHHHHHHHHHHHHHHhhhcc-------cccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHHHhhhhhH
Q psy4740          16 HTLGFGILSTAIFTLLTPFAA-------RQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVFAGNQIG   88 (147)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g   88 (147)
                      +.+..+.++.+++........       ..+.+.+++..++.|++.+...+....++.|..|+++|++++++.+...++|
T Consensus       374 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g  453 (524)
T 2xut_A          374 RKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVG  453 (524)
T ss_dssp             HHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHH
Confidence            456667777777776665531       1356677778889999999889999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhcCCCh---------hHHHHHHHHHHHHHHHHHHhhccCC
Q psy4740          89 TVFSSFLSGFLLKYTDGDW---------PEIFYLFGILGVLWFVAWCFLCYND  132 (147)
Q Consensus        89 ~~~~~~~~~~l~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~  132 (147)
                      ..++|.+.+.+.+..+.+|         +..|++.+.+.++..+..++..++.
T Consensus       454 ~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  506 (524)
T 2xut_A          454 NLWVLLANVSVKSPTVTEQIVQTGMSVTAFQMFFFAGFAILAAIVFALYARSY  506 (524)
T ss_dssp             HHHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHC------
T ss_pred             HHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999998876321123         3336666666666555555554443

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=98.65  E-value=2.1e-09  Score=74.90  Aligned_cols=108  Identities=17%  Similarity=0.068  Sum_probs=76.8

Q ss_pred             cchhhhhhhhcchHHHHHHHHH-HHHHHHHhhhc--ccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHH
Q psy4740           3 IPGGLLAQKFGGKHTLGFGILS-TAIFTLLTPFA--ARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGS   79 (147)
Q Consensus         3 ~~~g~l~d~~gr~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~   79 (147)
                      ++.+++.||++++  +..+... ...+.......  ..++.+..++..++.|++.+...+....++.|..| ++|+++.+
T Consensus       253 ~~~~~l~~r~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g  329 (375)
T 2gfp_A          253 WFAGRPNKRFSTL--MWQSVICCLLAGLLMWIPDWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGA  329 (375)
T ss_dssp             HHHHTTTTHHHHH--HHHHHHHHHHTSSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHH
T ss_pred             HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHH
Confidence            4567788888762  2223222 22221111111  11355666677888899999999999999999998 89999999


Q ss_pred             HHHhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHH
Q psy4740          80 FVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFG  115 (147)
Q Consensus        80 ~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~  115 (147)
                      +.+...++|..++|.+.+.+.+.  .+++..+.+.+
T Consensus       330 ~~~~~~~~g~~~~~~~~g~l~~~--~~~~~~~~~~~  363 (375)
T 2gfp_A          330 LVGGLQNIGSGVLASLSAMLPQT--GQGSLGLLMTL  363 (375)
T ss_dssp             HHHHHHHHHHHCCSTTCTHHHHH--HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcC--CcccHHHHHHH
Confidence            99999999999999999988776  56776666543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	147
d1pw4a_	447	f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es	1e-07
d1pv7a_	417	f.38.1.2 (A:) Lactose permease {Escherichia coli [	0.001

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

 Score = 47.4 bits (111), Expect = 1e-07
 Identities = 22/128 (17%), Positives = 43/128 (33%), Gaps = 2/128 (1%)

Query: 3   IPGGLLAQKFGGKHTLGFGILSTAIFTLLTPF--AARQSANWLIALRFFEGLGEGTTFPA 60
              G ++ +   +  L  G++  A   L   F   A  S   +  L F  G  +G  +P 
Sbjct: 77  FIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPP 136

Query: 61  LNTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVL 120
               +  W    ERG I S     + +G      L    + + +     ++       ++
Sbjct: 137 CGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILV 196

Query: 121 WFVAWCFL 128
              A+  +
Sbjct: 197 ALFAFAMM 204

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

 Score = 35.9 bits (81), Expect = 0.001
 Identities = 10/89 (11%), Positives = 27/89 (30%), Gaps = 3/89 (3%)

Query: 41  NWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVFA-GNQIGTVFSSFLSGFL 99
             ++ L+                 +           I    F    Q+  +F S L+G +
Sbjct: 313 LEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNM 372

Query: 100 LKYTDGDWPEIFYLFGILGVLWFVAWCFL 128
            +     +   + + G++ + + +   F 
Sbjct: 373 YESI--GFQGAYLVLGLVALGFTLISVFT 399

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	147
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.82
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.64
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.36
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.33

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.82  E-value=1.7e-20  Score=131.40  Aligned_cols=133  Identities=20%  Similarity=0.307  Sum_probs=115.2

Q ss_pred             CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcc--cccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHH
Q psy4740           2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAA--RQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGS   79 (147)
Q Consensus         2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~   79 (147)
                      ++++|+++||+|||+++..+.++.+++.++++...  .+++..+++.|++.|++.+...+....++.|++|+++|++.++
T Consensus        76 ~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~  155 (447)
T d1pw4a_          76 KFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVS  155 (447)
T ss_dssp             HHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHH
T ss_pred             HHHHHHHHHHcCchHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhccccccc
Confidence            57899999999999999999999999888876652  2467889999999999999999999999999999999999999


Q ss_pred             HHHhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhccCCCCC
Q psy4740          80 FVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPAS  135 (147)
Q Consensus        80 ~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (147)
                      +.+....+|..+++.+++...... .+|++.|++.+.+.++..+..+.+.++.|++
T Consensus       156 ~~~~~~~~g~~i~~~~~~~~~~~~-~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (447)
T d1pw4a_         156 VWNCAHNVGGGIPPLLFLLGMAWF-NDWHAALYMPAFCAILVALFAFAMMRDTPQS  210 (447)
T ss_dssp             HHHHHHHHHHTSHHHHHHHHHHHT-CCSTTCTHHHHHHHHHHHHHHHHHCCCSSTT
T ss_pred             ccccccchhhhhhhhhhhhHhhhh-hcccccchhhhhhHHHHHHHHHHhcccchhh
Confidence            999999999999999988877663 4899999998888887777777776665543

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.64  E-value=5.4e-16  Score=106.33  Aligned_cols=126  Identities=14%  Similarity=0.141  Sum_probs=110.1

Q ss_pred             CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHH
Q psy4740           2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFV   81 (147)
Q Consensus         2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~   81 (147)
                      ..+.+++.||+|+|+.+..+.++.++........  ++.+..++..++.|++.+...+....++.|.+|++.|++..+..
T Consensus       276 ~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (417)
T d1pv7a_         276 MFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFA--TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVC  353 (417)
T ss_dssp             HTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHH
T ss_pred             hhhhhhhhcccccccchhhhHHHHHHhhhccccc--cccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhHHHHHHHHH
Confidence            3568899999999999999999999988888887  88888899999999999999999999999999999999999985


Q ss_pred             -HhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhccC
Q psy4740          82 -FAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYN  131 (147)
Q Consensus        82 -~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (147)
                       +....+|..++|.+.+.+.+.  .|++..|++.+++.++..+...+..++
T Consensus       354 ~~~~~~~g~~i~~~~~G~l~~~--~g~~~~~~~~~~~~~~~~~~~~~~l~~  402 (417)
T d1pv7a_         354 FCFFKQLAMIFMSVLAGNMYES--IGFQGAYLVLGLVALGFTLISVFTLSG  402 (417)
T ss_dssp             HTTTHHHHHHHHHHHHHHHHHH--HCHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH--HCHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence             556779999999999999998  689999999888887766666665544

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.36  E-value=7.1e-13  Score=92.15  Aligned_cols=127  Identities=13%  Similarity=0.107  Sum_probs=91.7

Q ss_pred             CcchhhhhhhhcchHHHHHHHH---HHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHH
Q psy4740           2 HIPGGLLAQKFGGKHTLGFGIL---STAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIG   78 (147)
Q Consensus         2 ~~~~g~l~d~~gr~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~   78 (147)
                      .++.|++.||++|++.......   +..+...........+.+...+..++.|++.+...+....+..|.+|++.|+++.
T Consensus       302 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~  381 (447)
T d1pw4a_         302 TLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAA  381 (447)
T ss_dssp             HHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHH
T ss_pred             hhhhhhhhhhccccccccccchhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence            3567899999998754333222   2222222222323356677777778888888888888889999999999999999


Q ss_pred             HHHHhhhhh-HHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhcc
Q psy4740          79 SFVFAGNQI-GTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCY  130 (147)
Q Consensus        79 ~~~~~~~~~-g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (147)
                      ++.+...++ |..++|.+.+.+.+.  .||+..|++.....++..++...+.+
T Consensus       382 g~~~~~~~~~g~~~~~~~~g~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~  432 (447)
T d1pw4a_         382 GFTGLFGYLGGSVAASAIVGYTVDF--FGWDGGFMVMIGGSILAVILLIVVMI  432 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHS--SCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH--hChHHHHHHHHHHHHHHHHHHHHHHH
Confidence            998887776 557789999999988  78998888877776665555444433

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.33  E-value=1.9e-12  Score=88.39  Aligned_cols=131  Identities=15%  Similarity=0.093  Sum_probs=87.0

Q ss_pred             CCcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHH----HHHHHHHHhhccccCcccHHHHhhhhcCC--cch
Q psy4740           1 MHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANW----LIALRFFEGLGEGTTFPALNTLLAQWVPP--TER   74 (147)
Q Consensus         1 ~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~g~~~~~~~~~~~~~~~~~~~~--~~r   74 (147)
                      +++++|+++||+|||+++.++.....++.......  .+...    ..+.+.+.+...+...........+..++  +++
T Consensus        59 ~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (417)
T d1pv7a_          59 FQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIF--IFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRS  136 (417)
T ss_dssp             THHHHHHHHHHHTTCTHHHHHHHHHHHTHHHHHHH--THHHHHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHh--hhhhhHHHHHHHHHHHhhhcccccccchhhcccccccchhhhh
Confidence            35789999999999999999888888877777665  33222    33444555555555544444444333322  344


Q ss_pred             hHHHHHHHhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhccCCCCCC
Q psy4740          75 GKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPASH  136 (147)
Q Consensus        75 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (147)
                      ....+........+..+++.+++.+.+.   +|+..+........+......+..++.++..
T Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (417)
T d1pv7a_         137 NFEFGRARMFGCVGWALGASIVGIMFTI---NNQFVFWLGSGCALILAVLLFFAKTDAPSSA  195 (417)
T ss_dssp             SCCHHHHHHHHHHHHHHHHHHHHHHHHH---CHHHHHHHHHHHHHHHHHHHHSSCCCSCSSS
T ss_pred             HHHHHHHhhhhccccccccccccccccc---cccccccchhhHHHHHHHHHHHHhcccccch
Confidence            5566677777888899999999999887   6666666666666665666666666655433